BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009707
(528 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255560950|ref|XP_002521488.1| tRNA-pseudouridine synthase, putative [Ricinus communis]
gi|223539387|gb|EEF40978.1| tRNA-pseudouridine synthase, putative [Ricinus communis]
Length = 513
Score = 755 bits (1950), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/531 (70%), Positives = 423/531 (79%), Gaps = 31/531 (5%)
Query: 11 ITSSRTLSLLLPPPL--------KDNFIKKNVYLLSTKAFSSSITSTPYPLQYDMIINNP 62
+ S +L LLP P K + + L S S STPYP QYDMII+ P
Sbjct: 1 MAKSLSLLFLLPKPTFCPILLSSKPKSLNRACILSSLSRTLFSTVSTPYPFQYDMIISRP 60
Query: 63 TQPQQSQTRRRPARVNSTNSDENQNPDGELGFDSWVDKKLEKEAKTRQPGSDNAEMTKSM 122
+Q Q Q+R +PARV +SD + P+ ELG DSWVD+KL M KS
Sbjct: 61 SQSQPPQSRSQPARVTKDDSDCSPEPESELGLDSWVDQKLS--------------MDKSK 106
Query: 123 RKYYNKRRQRMYGTDSEDEYGKNDDGFVELKPEVVEFNRLHKREEELYFYDTFAYPWEKD 182
RKYYNKRR+RMYG+DS+D+ D+GFVELKPEV F LHKREEELY YDTFAYPWEKD
Sbjct: 107 RKYYNKRRKRMYGSDSDDDTRNKDEGFVELKPEVAHFGSLHKREEELYMYDTFAYPWEKD 166
Query: 183 KHYKMVYQLEKKYFPDQCLDKAFLDP-----SADQNVKKMRKKAGGKSEEKKYNKEDDKR 237
KHYKMVYQLEKKYFPDQC DKAFLD S +++VK+ K+ + ++E+DK
Sbjct: 167 KHYKMVYQLEKKYFPDQCFDKAFLDHKDSNFSKNESVKRSSKRVVKRDTNGVGDREEDKG 226
Query: 238 LVFFDDQEKKSEKDSILGEDVNVKGEVSEKKVEEFFKCLKKVPNKENEVGSGEPYIVSRS 297
LVFF++++ + E +S + NV +V+E+KVEEFFKCLKKVPNK+NE+ +GEPY+V+RS
Sbjct: 227 LVFFEEEKAEIESNS----EKNVAKDVTERKVEEFFKCLKKVPNKKNEIDTGEPYLVTRS 282
Query: 298 TELPPTWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVG 357
TELPP WD GT+VLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVG
Sbjct: 283 TELPPRWDDTHGTVVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVG 342
Query: 358 KATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEI 417
KATK+VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASF GEI
Sbjct: 343 KATKVVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFCGEI 402
Query: 418 WQVPPMFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKG 477
WQVPPMFSAIKVGGEKMY+KARRGESIELSPRRISIFQF+IERSLEDRQNLIFRV CSKG
Sbjct: 403 WQVPPMFSAIKVGGEKMYEKARRGESIELSPRRISIFQFNIERSLEDRQNLIFRVVCSKG 462
Query: 478 TYIRSLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAITKNYF 528
TY+RSLCADFGKALGSCAHLTALRRDSIG+YSADDAWEFKELEEAITKNYF
Sbjct: 463 TYVRSLCADFGKALGSCAHLTALRRDSIGEYSADDAWEFKELEEAITKNYF 513
>gi|449450185|ref|XP_004142844.1| PREDICTED: uncharacterized protein LOC101215528 [Cucumis sativus]
Length = 544
Score = 722 bits (1864), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/547 (67%), Positives = 429/547 (78%), Gaps = 33/547 (6%)
Query: 2 SLLLLRPKLITSSRTLSLLLPPPLKDNF----IKKNVYLLSTKAFSSSITSTPYPLQYDM 57
S +R L+ SS++LSL LP ++ + ++ LS + FS T+T +PLQY++
Sbjct: 11 SHFFIRSTLMPSSKSLSLFLPLSNLNHLHRFAFRNSLSPLSLRTFS---TTTLFPLQYEL 67
Query: 58 IINNPTQPQQ-SQTRRRPARVNSTNSDE---NQNPDGELGFDSWVDKKLEKEAKTRQPGS 113
IIN P+ P Q R PARV+S NS E +++P ELGFDSWVD+KL E T G
Sbjct: 68 IINRPSYPSPPHQNPRTPARVSSDNSPELNSSEDPTSELGFDSWVDRKLISEGGTVS-GK 126
Query: 114 DNAEMTKSMRKYYNKRRQRMYGTDSEDEYGKNDDGFVELKPEVVEFNRLHKREEELYFYD 173
+ M K+MRKYYNKRR+RMYG+DS+++ +GFVELKPEVVEFN LHKREEEL+F+D
Sbjct: 127 EGVVMDKAMRKYYNKRRKRMYGSDSDEDNRTQAEGFVELKPEVVEFNTLHKREEELFFHD 186
Query: 174 TFAYPWEKDKHYKMVYQLEKKYFPDQCLDKAFLDPSADQNV--------KKMRKKAGGKS 225
FAYPWEKDKHYKM+YQLEKKYFPD LDKAFL P + NV ++ +KAG
Sbjct: 187 AFAYPWEKDKHYKMLYQLEKKYFPDDGLDKAFLGP-GESNVEVNEQTKGRQGVRKAGRVK 245
Query: 226 EEKKY---NKEDDKRLVFFDD-QEKKSEKDSILGEDVNVKGEVSEKKVEEFFKCLKKVPN 281
E N DDKR+VFFD+ + +K K S++ +VSEKKVEEFFKCLKK P
Sbjct: 246 PEMNVEVANGMDDKRMVFFDEGKPEKENKGSVV--------DVSEKKVEEFFKCLKKGPA 297
Query: 282 KENEVGSGEPYIVSRSTELPPTWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHA 341
K++ +G GEPY+++R ELP WD P GT+VL+NKPKGWTSFTVCGKLRRLVKVKKVGHA
Sbjct: 298 KDSNIGQGEPYLLTRHMELPAKWDSPCGTVVLLNKPKGWTSFTVCGKLRRLVKVKKVGHA 357
Query: 342 GTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHI 401
GTLDPMATGLLIVCVGKATKLVDRYQGMIK YSGVFRLGEATSTWDADSPVIQREPWEHI
Sbjct: 358 GTLDPMATGLLIVCVGKATKLVDRYQGMIKSYSGVFRLGEATSTWDADSPVIQREPWEHI 417
Query: 402 KDEDIRKAAASFRGEIWQVPPMFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERS 461
KD+DI+KAAASF GEIWQVPPMFSAIKVGGE+MY+KARRGESIELSPR+ISIF+FDIERS
Sbjct: 418 KDDDIQKAAASFCGEIWQVPPMFSAIKVGGERMYEKARRGESIELSPRQISIFKFDIERS 477
Query: 462 LEDRQNLIFRVTCSKGTYIRSLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
L+DRQNLIFRVTCSKGTYIRSLCAD GK LGSCAHLTALRRDSIGQY ADDAWEFKELE+
Sbjct: 478 LDDRQNLIFRVTCSKGTYIRSLCADLGKTLGSCAHLTALRRDSIGQYLADDAWEFKELED 537
Query: 522 AITKNYF 528
AITK YF
Sbjct: 538 AITKGYF 544
>gi|297811569|ref|XP_002873668.1| hypothetical protein ARALYDRAFT_488288 [Arabidopsis lyrata subsp.
lyrata]
gi|297319505|gb|EFH49927.1| hypothetical protein ARALYDRAFT_488288 [Arabidopsis lyrata subsp.
lyrata]
Length = 538
Score = 712 bits (1839), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/551 (66%), Positives = 427/551 (77%), Gaps = 36/551 (6%)
Query: 1 MSLLLLRPKLITSSRTLSLLLPPPLKDNFIK--KNVYLLSTKAFSSSITSTPYPLQYDMI 58
M+ L +LI SS + + + L + +K +N++ + S TST YPLQYDMI
Sbjct: 1 MAKALHFTRLIMSSSSARMCMTSSLFFSSVKPRRNIHKPYLASLFLSTTSTRYPLQYDMI 60
Query: 59 INNPTQPQQSQTRRRPARVNSTNSDENQNPDGELGFDSWVDKKLEKEAKTRQPGSDNAEM 118
IN PTQ SQTRRRP + + + ++ P+ FDSWVD KL E + +PGS + EM
Sbjct: 61 INRPTQSSLSQTRRRPPKAIESGAPDSAEPE----FDSWVDNKLALEREQGRPGSGDPEM 116
Query: 119 TKSMRKYYNKRRQRMYGTDSEDEYG-KNDDGFVELKPEVVEFNRLHKREEELYFYDTFAY 177
K+ RKYY+KRR+R+YG+DSEDE K+D+GFVELKP+VVEF+RLH+REEELYFYDTFAY
Sbjct: 117 DKAKRKYYSKRRKRLYGSDSEDESRRKSDEGFVELKPQVVEFDRLHQREEELYFYDTFAY 176
Query: 178 PWEKDKHYKMVYQLEKKYFPDQCLDKAFLDPS-----ADQNVKKMRKK------AGGKSE 226
PWEKDKHYKMVYQLEKKY+PDQCLDKAFL P D + K+R K GGK
Sbjct: 177 PWEKDKHYKMVYQLEKKYYPDQCLDKAFLQPGEVSKKGDDDSGKVRGKKKVVAALGGKRN 236
Query: 227 EKKYNK-----EDDKRLVFFDD-QEKKSEKDSILGEDVNVKGEVSEKKVEEFFKCLKKVP 280
E K EDD +LVFFD+ +EKK +D ++ V+EKKVE+FFK L K P
Sbjct: 237 EVKRMGMENCVEDDDKLVFFDEVKEKKKPEDDVV---------VTEKKVEQFFKDLTKSP 287
Query: 281 NKENEV---GSGEPYIVSRSTELPPTWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKK 337
+++ G GEP++V+R+ ELPP WDGP GT++LVNKPKGWTSFTVCGKLRRLVKVKK
Sbjct: 288 SEKGVTSGGGDGEPFLVTRNGELPPRWDGPNGTVLLVNKPKGWTSFTVCGKLRRLVKVKK 347
Query: 338 VGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREP 397
VGHAGTLDPMATGLLIVC+GKATK+VDRYQGMIK YSGVFRLGEATST DADSPVIQREP
Sbjct: 348 VGHAGTLDPMATGLLIVCIGKATKVVDRYQGMIKCYSGVFRLGEATSTLDADSPVIQREP 407
Query: 398 WEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEKMYDKARRGESIELSPRRISIFQFD 457
WEHIKD+DI+KA SF GEIWQVPPMFSAIKVGGEKMY+KARRGE++ELSPRRISIFQFD
Sbjct: 408 WEHIKDDDIKKALTSFLGEIWQVPPMFSAIKVGGEKMYEKARRGETVELSPRRISIFQFD 467
Query: 458 IERSLEDRQNLIFRVTCSKGTYIRSLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFK 517
IERSL+DRQNLIFRV CSKGTYIRSLCAD KALGSCAHLTALRRDSIG+YSA+DAWEF
Sbjct: 468 IERSLDDRQNLIFRVICSKGTYIRSLCADLAKALGSCAHLTALRRDSIGEYSANDAWEFN 527
Query: 518 ELEEAITKNYF 528
ELE AITKNYF
Sbjct: 528 ELEAAITKNYF 538
>gi|225452300|ref|XP_002272379.1| PREDICTED: uncharacterized protein LOC100259460 [Vitis vinifera]
Length = 520
Score = 694 bits (1790), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/539 (68%), Positives = 419/539 (77%), Gaps = 39/539 (7%)
Query: 1 MSLLLLRPKLITSSRTLSLLLPPPLKDNFIKKNVY--LLSTKAFSSSITSTPYPLQYDMI 58
+SLL RPK TLSL PP + + + L ST TSTP+PLQYDMI
Sbjct: 10 VSLLFFRPK-----PTLSLFFKPPSLRLLTRPSSFPHLFST-------TSTPHPLQYDMI 57
Query: 59 INNPTQPQQSQTRRRPARVNSTNSDENQNPDGEL----GFDSWVDKKLEKEAKTRQPGSD 114
I+ P QP + RR NS N +PD E GF++WVD+KL GSD
Sbjct: 58 ISRPAQPPPPRPRR--RLTPLPNSKPNDSPDAESPDSEGFENWVDRKLS--------GSD 107
Query: 115 NAEMTKSMRKYYNKRRQRMYGTDSEDEYGKNDDGFVELKPEVVEFNRLHKREEELYFYDT 174
+ +M K+ RKYYNKRR+RMYG+DS+++ G + +VELK EVVE LHK+EEELYFYD
Sbjct: 108 DLQMDKAKRKYYNKRRKRMYGSDSDEDGGAAQEKYVELKQEVVELRTLHKKEEELYFYDA 167
Query: 175 FAYPWEKDKHYKMVYQLEKKYFPDQCLDKAFLDP-----SADQNVKKMRKKAGGKSEEKK 229
FAYPWEK+KHYKMVYQLEKKYFPD CLDKAFL+P SA+ K + GG+ E+
Sbjct: 168 FAYPWEKEKHYKMVYQLEKKYFPDHCLDKAFLEPGETNESANNAKAKKKVGKGGEKREEI 227
Query: 230 YNKEDDKRLVFFDDQEKKSEKDSILGEDVNVKGEVSEKKVEEFFKCLKKVPNKENEVGSG 289
+ DDK LVFF+ + K EK S+ ++ E+SEKKVEEFFKCLKKVPNK+ E G
Sbjct: 228 GDGGDDKGLVFFEGE--KDEKVSVSAKE----KELSEKKVEEFFKCLKKVPNKDVEGDRG 281
Query: 290 EPYIVSRSTELPPTWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMAT 349
EPY V+RS+ELPP WDGP GT+VL+NKPKGWTSFTVCGKLRRLV+VKKVGHAGTLDPMAT
Sbjct: 282 EPYFVTRSSELPPRWDGPSGTVVLINKPKGWTSFTVCGKLRRLVQVKKVGHAGTLDPMAT 341
Query: 350 GLLIVCVGKATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKA 409
GLLIVCVGKATKLV+ YQGM+KGYSG+FRLGEATSTWDADSPVIQREPWEHIKDE+I+K
Sbjct: 342 GLLIVCVGKATKLVESYQGMVKGYSGIFRLGEATSTWDADSPVIQREPWEHIKDENIKKT 401
Query: 410 AASFRGEIWQVPPMFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLI 469
AASF GEIWQVPPMFSAIKVGGEKMY+KARRGES+ELSPRRISIF+FDIERSL+DRQNL+
Sbjct: 402 AASFCGEIWQVPPMFSAIKVGGEKMYEKARRGESVELSPRRISIFKFDIERSLDDRQNLV 461
Query: 470 FRVTCSKGTYIRSLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAITKNYF 528
FRVTCSKGTYIRSLCADFGKALGSCAHL ALRRDSIG YSADDAWEFK+LEEAITK YF
Sbjct: 462 FRVTCSKGTYIRSLCADFGKALGSCAHLAALRRDSIGPYSADDAWEFKDLEEAITKGYF 520
>gi|296087588|emb|CBI34844.3| unnamed protein product [Vitis vinifera]
Length = 502
Score = 693 bits (1788), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/534 (67%), Positives = 414/534 (77%), Gaps = 47/534 (8%)
Query: 1 MSLLLLRPKLITSSRTLSLLLPPPLKDNFIKKNVY--LLSTKAFSSSITSTPYPLQYDMI 58
+SLL RPK TLSL PP + + + L ST TSTP+PLQYDMI
Sbjct: 10 VSLLFFRPK-----PTLSLFFKPPSLRLLTRPSSFPHLFST-------TSTPHPLQYDMI 57
Query: 59 INNPTQPQQSQTRRRPARVNSTNSDENQNPDGEL----GFDSWVDKKLEKEAKTRQPGSD 114
I+ P QP + RR NS N +PD E GF++WVD+KL GSD
Sbjct: 58 ISRPAQPPPPRPRR--RLTPLPNSKPNDSPDAESPDSEGFENWVDRKLS--------GSD 107
Query: 115 NAEMTKSMRKYYNKRRQRMYGTDSEDEYGKNDDGFVELKPEVVEFNRLHKREEELYFYDT 174
+ +M K+ RKYYNKRR+RMYG+DS+++ G + +VELK EVVE LHK+EEELYFYD
Sbjct: 108 DLQMDKAKRKYYNKRRKRMYGSDSDEDGGAAQEKYVELKQEVVELRTLHKKEEELYFYDA 167
Query: 175 FAYPWEKDKHYKMVYQLEKKYFPDQCLDKAFLDPSADQNVKKMRKKAGGKSEEKKYNKED 234
FAYPWEK+KHYKMVYQLEKKYFPD CLDKAFL+P G +E++ + D
Sbjct: 168 FAYPWEKEKHYKMVYQLEKKYFPDHCLDKAFLEP-------------GETNEKEIGDGGD 214
Query: 235 DKRLVFFDDQEKKSEKDSILGEDVNVKGEVSEKKVEEFFKCLKKVPNKENEVGSGEPYIV 294
DK LVFF+ + K EK S+ ++ E+SEKKVEEFFKCLKKVPNK+ E GEPY V
Sbjct: 215 DKGLVFFEGE--KDEKVSVSAKE----KELSEKKVEEFFKCLKKVPNKDVEGDRGEPYFV 268
Query: 295 SRSTELPPTWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIV 354
+RS+ELPP WDGP GT+VL+NKPKGWTSFTVCGKLRRLV+VKKVGHAGTLDPMATGLLIV
Sbjct: 269 TRSSELPPRWDGPSGTVVLINKPKGWTSFTVCGKLRRLVQVKKVGHAGTLDPMATGLLIV 328
Query: 355 CVGKATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFR 414
CVGKATKLV+ YQGM+KGYSG+FRLGEATSTWDADSPVIQREPWEHIKDE+I+K AASF
Sbjct: 329 CVGKATKLVESYQGMVKGYSGIFRLGEATSTWDADSPVIQREPWEHIKDENIKKTAASFC 388
Query: 415 GEIWQVPPMFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTC 474
GEIWQVPPMFSAIKVGGEKMY+KARRGES+ELSPRRISIF+FDIERSL+DRQNL+FRVTC
Sbjct: 389 GEIWQVPPMFSAIKVGGEKMYEKARRGESVELSPRRISIFKFDIERSLDDRQNLVFRVTC 448
Query: 475 SKGTYIRSLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAITKNYF 528
SKGTYIRSLCADFGKALGSCAHL ALRRDSIG YSADDAWEFK+LEEAITK YF
Sbjct: 449 SKGTYIRSLCADFGKALGSCAHLAALRRDSIGPYSADDAWEFKDLEEAITKGYF 502
>gi|7573471|emb|CAB87785.1| tRNA synthase-like protein [Arabidopsis thaliana]
Length = 540
Score = 691 bits (1783), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/540 (67%), Positives = 419/540 (77%), Gaps = 28/540 (5%)
Query: 9 KLITSSRTLSLLLPPPLKDNFIKKNVYLLSTKAFSSSITSTPYPLQYDMIINNPTQPQQS 68
+L++SS +S+ P +N++ + S TST YPLQYDMIIN PTQ S
Sbjct: 9 RLMSSSARMSMTSPLFFSSVKPWRNIHKPYLASLFLSTTSTRYPLQYDMIINRPTQSSLS 68
Query: 69 QTRRRPARVNSTNSDENQNPDGELGFDSWVDKKLEKEAKTRQPGSDNAEMTKSMRKYYNK 128
Q RRRP + + + ++ P+ FDSWVD KL E + +PGS + EM K+ RKYY+K
Sbjct: 69 QNRRRPPKAIESGAPDSAEPE----FDSWVDNKLAMEREQGRPGSGDPEMDKAKRKYYSK 124
Query: 129 RRQRMYGTDSEDEYG--KNDDGFVELKPEVVEFNRLHKREEELYFYDTFAYPWEKDKHYK 186
RR+R+YG+DSEDE K+D+GFVELKPEVVEF+RLH+REEELYFYDTFAYPWEKDKHYK
Sbjct: 125 RRKRLYGSDSEDETSSRKSDEGFVELKPEVVEFDRLHQREEELYFYDTFAYPWEKDKHYK 184
Query: 187 MVYQLEKKYFPDQCLDKAFLDP------SADQNVKKMRKKA----GGKSEEKKY-----N 231
MVYQLEKKY+PDQCLDKAFL P S D + +KK GGK E K
Sbjct: 185 MVYQLEKKYYPDQCLDKAFLQPGEVLKKSDDSGKVRGKKKVVAALGGKRSEVKRIGMENC 244
Query: 232 KEDDKRLVFFDDQEKKSEKDSILGEDVNVKGEVSEKKVEEFFKCLKKVPNKENEV---GS 288
EDD +LVFFD+ ++K EK + V+EKKVE+FFK L K PN++ G
Sbjct: 245 DEDDDKLVFFDEVKEKEEKKKS----EDDVVVVTEKKVEQFFKGLTKSPNEKGMASGGGD 300
Query: 289 GEPYIVSRSTELPPTWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMA 348
GEP++V+R+ ELPP WDGP GT++LVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMA
Sbjct: 301 GEPFLVTRNGELPPRWDGPNGTVLLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMA 360
Query: 349 TGLLIVCVGKATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRK 408
TGLLIVCVGKATK+VDRYQGMIKGYSGVFRLGEATST DADSPVIQRE WEHIKD+DI+K
Sbjct: 361 TGLLIVCVGKATKVVDRYQGMIKGYSGVFRLGEATSTLDADSPVIQRESWEHIKDDDIKK 420
Query: 409 AAASFRGEIWQVPPMFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNL 468
A SF GEIWQVPPMFSAIKVGGEKMY+KARRGE++ELSPRRISIFQFDIERSL+DRQNL
Sbjct: 421 ALTSFLGEIWQVPPMFSAIKVGGEKMYEKARRGETVELSPRRISIFQFDIERSLDDRQNL 480
Query: 469 IFRVTCSKGTYIRSLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAITKNYF 528
IFRV CSKGTYIRSLCAD KALGSCAHLTALRRDSIG+YSA+DAWEF ELE AITKNYF
Sbjct: 481 IFRVICSKGTYIRSLCADLAKALGSCAHLTALRRDSIGEYSANDAWEFNELEAAITKNYF 540
>gi|186522847|ref|NP_196950.2| tRNA pseudouridine synthase B [Arabidopsis thaliana]
gi|110741670|dbj|BAE98781.1| tRNA synthase - like protein [Arabidopsis thaliana]
gi|332004654|gb|AED92037.1| tRNA pseudouridine synthase B [Arabidopsis thaliana]
Length = 540
Score = 691 bits (1782), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/548 (66%), Positives = 422/548 (77%), Gaps = 28/548 (5%)
Query: 1 MSLLLLRPKLITSSRTLSLLLPPPLKDNFIKKNVYLLSTKAFSSSITSTPYPLQYDMIIN 60
M+ L +L++SS +S+ P +N++ + S TST YPLQYDMIIN
Sbjct: 1 MAKSLHFTRLMSSSARMSMTSPLFFSSVKPWRNIHKPYLASLFLSTTSTRYPLQYDMIIN 60
Query: 61 NPTQPQQSQTRRRPARVNSTNSDENQNPDGELGFDSWVDKKLEKEAKTRQPGSDNAEMTK 120
PTQ SQ RRRP + + + ++ P+ FDSWVD KL E + +PGS + EM K
Sbjct: 61 RPTQSSLSQNRRRPPKAIESGAPDSAEPE----FDSWVDNKLAMEREQGRPGSGDPEMDK 116
Query: 121 SMRKYYNKRRQRMYGTDSEDEYG--KNDDGFVELKPEVVEFNRLHKREEELYFYDTFAYP 178
+ RKYY+KRR+R+YG+DSEDE K+D+GFVELKPEVVEF+RLH+REEELYFYDTFAYP
Sbjct: 117 AKRKYYSKRRKRLYGSDSEDENSSRKSDEGFVELKPEVVEFDRLHQREEELYFYDTFAYP 176
Query: 179 WEKDKHYKMVYQLEKKYFPDQCLDKAFLDP------SADQNVKKMRKKA----GGKSEEK 228
WEKDKHYKMVYQLEKKY+PDQCLDKAFL P S D + +KK GGK E
Sbjct: 177 WEKDKHYKMVYQLEKKYYPDQCLDKAFLQPGEVLKKSDDSGKVRGKKKVVAALGGKRSEV 236
Query: 229 KY-----NKEDDKRLVFFDDQEKKSEKDSILGEDVNVKGEVSEKKVEEFFKCLKKVPNKE 283
K EDD +LVFFD+ ++K EK + V+EKKVE+FFK L K PN++
Sbjct: 237 KRIGMENCDEDDDKLVFFDEVKEKEEKKKS----EDDVVVVTEKKVEQFFKGLTKSPNEK 292
Query: 284 NEV---GSGEPYIVSRSTELPPTWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGH 340
G GEP++V+R+ ELPP WDGP GT++LVNKPKGWTSFTVCGKLRRLVKVKKVGH
Sbjct: 293 GMASGGGDGEPFLVTRNGELPPRWDGPNGTVLLVNKPKGWTSFTVCGKLRRLVKVKKVGH 352
Query: 341 AGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEH 400
AGTLDPMATGLLIVCVGKATK+VDRYQGMIKGYSGVFRLGEATST DADSPVIQRE WEH
Sbjct: 353 AGTLDPMATGLLIVCVGKATKVVDRYQGMIKGYSGVFRLGEATSTLDADSPVIQRESWEH 412
Query: 401 IKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIER 460
IKD+DI+KA SF GEIWQVPPMFSAIKVGGEKMY+KARRGE++ELSPRRISIFQFDIER
Sbjct: 413 IKDDDIKKALTSFLGEIWQVPPMFSAIKVGGEKMYEKARRGETVELSPRRISIFQFDIER 472
Query: 461 SLEDRQNLIFRVTCSKGTYIRSLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELE 520
SL+DRQNLIFRV CSKGTYIRSLCAD KALGSCAHLTALRRDSIG+YSA+DAWEF ELE
Sbjct: 473 SLDDRQNLIFRVICSKGTYIRSLCADLAKALGSCAHLTALRRDSIGEYSANDAWEFNELE 532
Query: 521 EAITKNYF 528
AITKNYF
Sbjct: 533 AAITKNYF 540
>gi|449532619|ref|XP_004173278.1| PREDICTED: uncharacterized LOC101215528, partial [Cucumis sativus]
Length = 517
Score = 653 bits (1684), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 338/511 (66%), Positives = 395/511 (77%), Gaps = 33/511 (6%)
Query: 2 SLLLLRPKLITSSRTLSLLLPPPLKDNF----IKKNVYLLSTKAFSSSITSTPYPLQYDM 57
S +R L+ SS++LSL LP ++ + ++ LS + FS T+T +PLQY++
Sbjct: 11 SHFFIRSTLMPSSKSLSLFLPLSNLNHLHRFAFRNSLSPLSLRTFS---TTTLFPLQYEL 67
Query: 58 IINNPTQPQQ-SQTRRRPARVNSTNSDE---NQNPDGELGFDSWVDKKLEKEAKTRQPGS 113
IIN P+ P Q R PARV+S NS E +++P ELGFDSWVD+KL E T G
Sbjct: 68 IINRPSYPSPPHQNPRTPARVSSDNSPELNSSEDPTSELGFDSWVDRKLISEGGTVS-GK 126
Query: 114 DNAEMTKSMRKYYNKRRQRMYGTDSEDEYGKNDDGFVELKPEVVEFNRLHKREEELYFYD 173
+ M K+MRKYYNKRR+RMYG+DS+++ +GFVELKPEVVEFN LHKREEEL+F+D
Sbjct: 127 EGVVMDKAMRKYYNKRRKRMYGSDSDEDNRTQAEGFVELKPEVVEFNTLHKREEELFFHD 186
Query: 174 TFAYPWEKDKHYKMVYQLEKKYFPDQCLDKAFLDPSADQNV--------KKMRKKAGGKS 225
FAYPWEKDKHYKM+YQLEKKYFPD LDKAFL P + NV ++ +KAG
Sbjct: 187 AFAYPWEKDKHYKMLYQLEKKYFPDDGLDKAFLGP-GESNVEVNEQTKGRQGVRKAGRVK 245
Query: 226 EEKKY---NKEDDKRLVFFDD-QEKKSEKDSILGEDVNVKGEVSEKKVEEFFKCLKKVPN 281
E N DDKR+VFFD+ + +K K S++ +VSEKKVEEFFKCLKK P
Sbjct: 246 PEMNVEVANGMDDKRMVFFDEGKPEKENKGSVV--------DVSEKKVEEFFKCLKKGPA 297
Query: 282 KENEVGSGEPYIVSRSTELPPTWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHA 341
K++ +G GEPY+++R ELP WD P GT+VL+NKPKGWTSFTVCGKLRRLVKVKKVGHA
Sbjct: 298 KDSNIGQGEPYLLTRHMELPAKWDSPCGTVVLLNKPKGWTSFTVCGKLRRLVKVKKVGHA 357
Query: 342 GTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHI 401
GTLDPMATGLLIVCVGKATKLVDRYQGMIK YSGVFRLGEATSTWDADSPVIQREPWEHI
Sbjct: 358 GTLDPMATGLLIVCVGKATKLVDRYQGMIKSYSGVFRLGEATSTWDADSPVIQREPWEHI 417
Query: 402 KDEDIRKAAASFRGEIWQVPPMFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERS 461
KD+DI+KAAASF GEIWQVPPMFSAIKVGGE+MY+KARRGESIELSPR+ISIF+FDIERS
Sbjct: 418 KDDDIQKAAASFCGEIWQVPPMFSAIKVGGERMYEKARRGESIELSPRQISIFKFDIERS 477
Query: 462 LEDRQNLIFRVTCSKGTYIRSLCADFGKALG 492
L+DRQNLIFRVTCSKGTYIRSLCAD GK LG
Sbjct: 478 LDDRQNLIFRVTCSKGTYIRSLCADLGKTLG 508
>gi|356511706|ref|XP_003524564.1| PREDICTED: uncharacterized protein LOC100793939 [Glycine max]
Length = 485
Score = 644 bits (1662), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/491 (68%), Positives = 372/491 (75%), Gaps = 55/491 (11%)
Query: 45 SITSTPYPLQYDMIINNPTQPQQSQTRRRPARVNSTNSDENQNPDGELGFDSWVDKKLEK 104
S T TPYPLQY++IIN P+ P RP +S E
Sbjct: 43 STTPTPYPLQYELIINRPSYPDSP----RPPPARPIDSPE-------------------- 78
Query: 105 EAKTRQPGSDNAEMTKSMRKYYNKRRQRMYGTDSEDEYGKNDDGFVELKPEVVEFNRLHK 164
E+ K+ RKYYNKRR+RMYG+D EDE + D+ FVELKPEVV+F LHK
Sbjct: 79 -----------PELNKAQRKYYNKRRKRMYGSD-EDESRRPDETFVELKPEVVDFPTLHK 126
Query: 165 REEELYFYDTFAYPWEKDKHYKMVYQLEKKYFPDQCLDKAFLDP---SADQNVKKMRKKA 221
REEELYFYD F YPWEKDKHYKMVYQLEKKYFPDQCLDKAFL P +A+ N K +K
Sbjct: 127 REEELYFYDAFTYPWEKDKHYKMVYQLEKKYFPDQCLDKAFLQPGQSNANANGKGKGRKK 186
Query: 222 GGKSEEKKYNKEDDKRLVFFDDQ--EKKSEKDSILGEDVNVKGEVSEKKVEEFFKCLKK- 278
+ ++LVFF++ E+K E E + ++ EKKVE+FFK LKK
Sbjct: 187 VVGGGGGE------EKLVFFEEGNVEEKGE------ESGSGSRQLKEKKVEDFFKGLKKD 234
Query: 279 -VPNKENEVGSGEPYIVSRSTELPPTWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKK 337
P+ +V GEP++ SR T LPP WD P GT++LVNKPKGWTSFTVCGKLRRLVKVKK
Sbjct: 235 PSPSLNKDVQVGEPFLSSRRTGLPPVWDTPHGTVLLVNKPKGWTSFTVCGKLRRLVKVKK 294
Query: 338 VGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREP 397
VGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREP
Sbjct: 295 VGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREP 354
Query: 398 WEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEKMYDKARRGESIELSPRRISIFQFD 457
WEHIKDEDI++ A SF GEIWQVPPMFSAIKVGGEKMY+KARRGESIELSPRRISIFQFD
Sbjct: 355 WEHIKDEDIKRNALSFSGEIWQVPPMFSAIKVGGEKMYEKARRGESIELSPRRISIFQFD 414
Query: 458 IERSLEDRQNLIFRVTCSKGTYIRSLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFK 517
IERSL+DRQNLIFRVTCSKGTYIRSLCADFGKALGSCAHLTALRRDSIGQYSADDAWEF+
Sbjct: 415 IERSLDDRQNLIFRVTCSKGTYIRSLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFQ 474
Query: 518 ELEEAITKNYF 528
ELEEAITKNY
Sbjct: 475 ELEEAITKNYL 485
>gi|413942368|gb|AFW75017.1| pseudouridylate synthase/ transporter [Zea mays]
Length = 497
Score = 578 bits (1490), Expect = e-162, Method: Compositional matrix adjust.
Identities = 305/506 (60%), Positives = 349/506 (68%), Gaps = 68/506 (13%)
Query: 45 SITSTPYPLQYDMIINNPTQPQQSQTRRRPARVNSTNSDENQNPDGE-LGFDSWVDKKLE 103
S+T+T YPL YD+I++ P P P + ++ +D P E D + L
Sbjct: 38 SLTATRYPLYYDLIVHRPADPN-------PPKSSAAGADRQPQPAPEEQTLDRAKRRYLR 90
Query: 104 KEAKTRQPGSDNAEMTKSMRKYYNKRRQRMYGTDSEDEYGKNDDGFVELKPEVVEFNRLH 163
K P D TK SE FVEL+PEVV+F RLH
Sbjct: 91 KRRSRLLPDPDATTTTKPS------------SLSSE---------FVELRPEVVDFPRLH 129
Query: 164 KREEELYFYDTFAYPWEKDKHYKMVYQLEKKYFPDQCLDKAFLDPSADQNVKKMRKKAGG 223
REE LYF+DTFA PWEKDKHY+M+Y+LEKKYFP Q LD AF+ A R
Sbjct: 130 AREEALYFHDTFAMPWEKDKHYRMLYRLEKKYFPHQSLDNAFVSADAAPASDADRG---- 185
Query: 224 KSEEKKYNKEDDKRLVFFDDQEKKSEKDSILGEDVNV-KGEVSEKKVEEFFKCLKKVP-- 280
LVFFDD++K++E + D KGEV E+KVE+FF+ LKK P
Sbjct: 186 --------------LVFFDDEKKENEGEERAVSDKGANKGEVLERKVEDFFRSLKKGPGQ 231
Query: 281 --NKENEVGS----------------GEPYIVSRSTELPPTWDGPFGTMVLVNKPKGWTS 322
K G+ +PY+V+R+TELPP WDGP GT+VL++KPKGWTS
Sbjct: 232 VDTKAKRPGTEPQQQVKREVRREEERPQPYLVTRTTELPPRWDGPAGTVVLIDKPKGWTS 291
Query: 323 FTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSGVFRLGEA 382
FTVCGKLRRLVKV+KVGHAGTLDPMATGLLIVCVGKATK+VD YQGM+KGYSGVFRLGEA
Sbjct: 292 FTVCGKLRRLVKVQKVGHAGTLDPMATGLLIVCVGKATKIVDSYQGMVKGYSGVFRLGEA 351
Query: 383 TSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEKMYDKARRGE 442
TSTWDADSP+IQREPWEHIKDE+IRKAAASF GEIWQVPPMFSAIKVGGEKMYDKAR+GE
Sbjct: 352 TSTWDADSPIIQREPWEHIKDENIRKAAASFMGEIWQVPPMFSAIKVGGEKMYDKARKGE 411
Query: 443 SIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKALGSCAHLTALRR 502
++ELSPRRISI+QFDIERSLEDRQNLIFRVTCSKGTYIRSLCAD GKALGSCAHLTALRR
Sbjct: 412 TVELSPRRISIYQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADLGKALGSCAHLTALRR 471
Query: 503 DSIGQYSADDAWEFKELEEAITKNYF 528
DSIG+YS +DAW F ELEE ITK Y
Sbjct: 472 DSIGEYSVNDAWNFDELEEQITKGYL 497
>gi|226501514|ref|NP_001150630.1| pseudouridylate synthase/ transporter [Zea mays]
gi|195640714|gb|ACG39825.1| pseudouridylate synthase/ transporter [Zea mays]
Length = 490
Score = 578 bits (1489), Expect = e-162, Method: Compositional matrix adjust.
Identities = 305/506 (60%), Positives = 349/506 (68%), Gaps = 68/506 (13%)
Query: 45 SITSTPYPLQYDMIINNPTQPQQSQTRRRPARVNSTNSDENQNPDGE-LGFDSWVDKKLE 103
S+T+T YPL YD+I++ P P P + ++ +D P E D + L
Sbjct: 31 SLTATRYPLYYDLIVHRPADPN-------PPKSSAAGADRQPQPAPEEQTLDRAKRRYLR 83
Query: 104 KEAKTRQPGSDNAEMTKSMRKYYNKRRQRMYGTDSEDEYGKNDDGFVELKPEVVEFNRLH 163
K P D TK SE FVEL+PEVV+F RLH
Sbjct: 84 KRRSRLLPDPDATTTTKPS------------SLSSE---------FVELRPEVVDFPRLH 122
Query: 164 KREEELYFYDTFAYPWEKDKHYKMVYQLEKKYFPDQCLDKAFLDPSADQNVKKMRKKAGG 223
REE LYF+DTFA PWEKDKHY+M+Y+LEKKYFP Q LD AF+ A R
Sbjct: 123 AREEALYFHDTFAMPWEKDKHYRMLYRLEKKYFPHQSLDNAFVSADAAPASDADRG---- 178
Query: 224 KSEEKKYNKEDDKRLVFFDDQEKKSEKDSILGEDVNV-KGEVSEKKVEEFFKCLKKVP-- 280
LVFFDD++K++E + D KGEV E+KVE+FF+ LKK P
Sbjct: 179 --------------LVFFDDEKKENEGEERAVSDKGANKGEVLERKVEDFFRSLKKGPGQ 224
Query: 281 --NKENEVGS----------------GEPYIVSRSTELPPTWDGPFGTMVLVNKPKGWTS 322
K G+ +PY+V+R+TELPP WDGP GT+VL++KPKGWTS
Sbjct: 225 VDTKAKRPGTEPQQQVKREVRREEERPQPYLVTRTTELPPRWDGPAGTVVLIDKPKGWTS 284
Query: 323 FTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSGVFRLGEA 382
FTVCGKLRRLVKV+KVGHAGTLDPMATGLLIVCVGKATK+VD YQGM+KGYSGVFRLGEA
Sbjct: 285 FTVCGKLRRLVKVQKVGHAGTLDPMATGLLIVCVGKATKIVDSYQGMVKGYSGVFRLGEA 344
Query: 383 TSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEKMYDKARRGE 442
TSTWDADSP+IQREPWEHIKDE+IRKAAASF GEIWQVPPMFSAIKVGGEKMYDKAR+GE
Sbjct: 345 TSTWDADSPIIQREPWEHIKDENIRKAAASFMGEIWQVPPMFSAIKVGGEKMYDKARKGE 404
Query: 443 SIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKALGSCAHLTALRR 502
++ELSPRRISI+QFDIERSLEDRQNLIFRVTCSKGTYIRSLCAD GKALGSCAHLTALRR
Sbjct: 405 TVELSPRRISIYQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADLGKALGSCAHLTALRR 464
Query: 503 DSIGQYSADDAWEFKELEEAITKNYF 528
DSIG+YS +DAW F ELEE ITK Y
Sbjct: 465 DSIGEYSVNDAWNFDELEEQITKGYL 490
>gi|297603679|ref|NP_001054428.2| Os05g0108000 [Oryza sativa Japonica Group]
gi|52353567|gb|AAU44133.1| putative tRNA synthase [Oryza sativa Japonica Group]
gi|255675942|dbj|BAF16342.2| Os05g0108000 [Oryza sativa Japonica Group]
Length = 488
Score = 551 bits (1419), Expect = e-154, Method: Compositional matrix adjust.
Identities = 297/501 (59%), Positives = 342/501 (68%), Gaps = 63/501 (12%)
Query: 45 SITSTPYPLQYDMIINNPTQPQQSQTRRRPARVNSTNSDENQNPDGELGFDSWVDKKLEK 104
S+T+TPYPL YD+++ P+ P P + ++ + + D L + +
Sbjct: 34 SLTATPYPLYYDLLLYRPSYPN-------PPKSSAADDRHTRPTDDHLDRAKRRYLRKRR 86
Query: 105 EAKTRQPGSDNAEMTKSMRKYYNKRRQRMYGTDSEDEYGKNDDGFVELKPEVVEFNRLHK 164
P + A+ + S FVELKPEVV+F RLH
Sbjct: 87 SRLLPDPDATTAKPSSSSSSE-----------------------FVELKPEVVDFPRLHA 123
Query: 165 REEELYFYDTFAYPWEKDKHYKMVYQLEKKYFPDQCLDKAFLDPSADQNVKKMRKKAGGK 224
REE LYF+D FA PWEKDKHY+M+Y+LEKKYFPDQ LD AF+ A
Sbjct: 124 REEALYFHDAFALPWEKDKHYRMLYRLEKKYFPDQSLDNAFVPADA-------------- 169
Query: 225 SEEKKYNKEDDKRLVFFDDQEKKSEKDSILGEDVNVKGEVSEKKVEEFFKCLKKVP-NKE 283
+ DK LVFFDD + E + +D +GEV E+KVE+FF+ LKK P + E
Sbjct: 170 --SPPSSDAADKGLVFFDDDDNNKEAEVKKKKDGEDRGEVLERKVEDFFRSLKKGPGHGE 227
Query: 284 NEVGSG----------------EPYIVSRSTELPPTWDGPFGTMVLVNKPKGWTSFTVCG 327
V +P++ SR TELPP W+GP GT+VL++KPKGWTSFTVCG
Sbjct: 228 ANVMKAKKKEPPQVRHEADEWPQPHLASRRTELPPRWNGPTGTVVLIDKPKGWTSFTVCG 287
Query: 328 KLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSGVFRLGEATSTWD 387
KLRRLV V+KVGHAGTLDPMATGLLIVCVGKATK+VDRYQGM+KGYSGVFRLGEATSTWD
Sbjct: 288 KLRRLVNVQKVGHAGTLDPMATGLLIVCVGKATKVVDRYQGMVKGYSGVFRLGEATSTWD 347
Query: 388 ADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEKMYDKARRGESIELS 447
ADSPVIQREPWEHIKDEDIRK AASFRGEIWQVPPMFSAIKVGGEKMYDKARRGE++ELS
Sbjct: 348 ADSPVIQREPWEHIKDEDIRKVAASFRGEIWQVPPMFSAIKVGGEKMYDKARRGETVELS 407
Query: 448 PRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKALGSCAHLTALRRDSIGQ 507
PRRISI QFDIERSLEDRQNLIFRV CSKGTYIRSLCAD GKALGSCAHLTALRRDSIG
Sbjct: 408 PRRISIHQFDIERSLEDRQNLIFRVICSKGTYIRSLCADLGKALGSCAHLTALRRDSIGD 467
Query: 508 YSADDAWEFKELEEAITKNYF 528
+S +DAW F ELEE ITK Y
Sbjct: 468 FSVNDAWSFAELEEQITKGYL 488
>gi|14719313|gb|AAK73131.1|AC079022_4 putative tRNA synthase [Oryza sativa]
Length = 525
Score = 550 bits (1418), Expect = e-154, Method: Compositional matrix adjust.
Identities = 297/501 (59%), Positives = 342/501 (68%), Gaps = 63/501 (12%)
Query: 45 SITSTPYPLQYDMIINNPTQPQQSQTRRRPARVNSTNSDENQNPDGELGFDSWVDKKLEK 104
S+T+TPYPL YD+++ P+ P P + ++ + + D L + +
Sbjct: 71 SLTATPYPLYYDLLLYRPSYPN-------PPKSSAADDRHTRPTDDHLDRAKRRYLRKRR 123
Query: 105 EAKTRQPGSDNAEMTKSMRKYYNKRRQRMYGTDSEDEYGKNDDGFVELKPEVVEFNRLHK 164
P + A+ + S FVELKPEVV+F RLH
Sbjct: 124 SRLLPDPDATTAKPSSSSSSE-----------------------FVELKPEVVDFPRLHA 160
Query: 165 REEELYFYDTFAYPWEKDKHYKMVYQLEKKYFPDQCLDKAFLDPSADQNVKKMRKKAGGK 224
REE LYF+D FA PWEKDKHY+M+Y+LEKKYFPDQ LD AF+ A
Sbjct: 161 REEALYFHDAFALPWEKDKHYRMLYRLEKKYFPDQSLDNAFVPADA-------------- 206
Query: 225 SEEKKYNKEDDKRLVFFDDQEKKSEKDSILGEDVNVKGEVSEKKVEEFFKCLKKVP-NKE 283
+ DK LVFFDD + E + +D +GEV E+KVE+FF+ LKK P + E
Sbjct: 207 --SPPSSDAADKGLVFFDDDDNNKEAEVKKKKDGEDRGEVLERKVEDFFRSLKKGPGHGE 264
Query: 284 NEVGSG----------------EPYIVSRSTELPPTWDGPFGTMVLVNKPKGWTSFTVCG 327
V +P++ SR TELPP W+GP GT+VL++KPKGWTSFTVCG
Sbjct: 265 ANVMKAKKKEPPQVRHEADEWPQPHLASRRTELPPRWNGPTGTVVLIDKPKGWTSFTVCG 324
Query: 328 KLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSGVFRLGEATSTWD 387
KLRRLV V+KVGHAGTLDPMATGLLIVCVGKATK+VDRYQGM+KGYSGVFRLGEATSTWD
Sbjct: 325 KLRRLVNVQKVGHAGTLDPMATGLLIVCVGKATKVVDRYQGMVKGYSGVFRLGEATSTWD 384
Query: 388 ADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEKMYDKARRGESIELS 447
ADSPVIQREPWEHIKDEDIRK AASFRGEIWQVPPMFSAIKVGGEKMYDKARRGE++ELS
Sbjct: 385 ADSPVIQREPWEHIKDEDIRKVAASFRGEIWQVPPMFSAIKVGGEKMYDKARRGETVELS 444
Query: 448 PRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKALGSCAHLTALRRDSIGQ 507
PRRISI QFDIERSLEDRQNLIFRV CSKGTYIRSLCAD GKALGSCAHLTALRRDSIG
Sbjct: 445 PRRISIHQFDIERSLEDRQNLIFRVICSKGTYIRSLCADLGKALGSCAHLTALRRDSIGD 504
Query: 508 YSADDAWEFKELEEAITKNYF 528
+S +DAW F ELEE ITK Y
Sbjct: 505 FSVNDAWSFAELEEQITKGYL 525
>gi|218195946|gb|EEC78373.1| hypothetical protein OsI_18143 [Oryza sativa Indica Group]
Length = 488
Score = 549 bits (1415), Expect = e-153, Method: Compositional matrix adjust.
Identities = 297/501 (59%), Positives = 341/501 (68%), Gaps = 63/501 (12%)
Query: 45 SITSTPYPLQYDMIINNPTQPQQSQTRRRPARVNSTNSDENQNPDGELGFDSWVDKKLEK 104
S+T+TPYPL YD+++ P+ P P + ++ + + D L + +
Sbjct: 34 SLTATPYPLYYDLLLYRPSYPN-------PPKSSAADDRHTRPTDDHLDRAKRRYLRKRR 86
Query: 105 EAKTRQPGSDNAEMTKSMRKYYNKRRQRMYGTDSEDEYGKNDDGFVELKPEVVEFNRLHK 164
P + A+ + S FVELKPEVV+F RLH
Sbjct: 87 SRLLPDPDATTAKPSSSSSSE-----------------------FVELKPEVVDFPRLHA 123
Query: 165 REEELYFYDTFAYPWEKDKHYKMVYQLEKKYFPDQCLDKAFLDPSADQNVKKMRKKAGGK 224
REE LYF+D FA PWEKDKHY+M+Y+LEKKYFPDQ LD AF+ A
Sbjct: 124 REEALYFHDAFALPWEKDKHYRMLYRLEKKYFPDQSLDNAFVPADA-------------- 169
Query: 225 SEEKKYNKEDDKRLVFFDDQEKKSEKDSILGEDVNVKGEVSEKKVEEFFKCLKKVP-NKE 283
+ DK LVFFDD E + +D +GEV E+KVE+FF+ LKK P + E
Sbjct: 170 --SPPSSDAADKGLVFFDDDGNNKEAEVKKKKDGEDRGEVLERKVEDFFRSLKKGPGHGE 227
Query: 284 NEVGSG----------------EPYIVSRSTELPPTWDGPFGTMVLVNKPKGWTSFTVCG 327
V +P++ SR TELPP W+GP GT+VL++KPKGWTSFTVCG
Sbjct: 228 ANVMKAKKKEPPQVRHEADEWPQPHLASRRTELPPRWNGPTGTVVLIDKPKGWTSFTVCG 287
Query: 328 KLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSGVFRLGEATSTWD 387
KLRRLV V+KVGHAGTLDPMATGLLIVCVGKATK+VDRYQGM+KGYSGVFRLGEATSTWD
Sbjct: 288 KLRRLVNVQKVGHAGTLDPMATGLLIVCVGKATKVVDRYQGMVKGYSGVFRLGEATSTWD 347
Query: 388 ADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEKMYDKARRGESIELS 447
ADSPVIQREPWEHIKDEDIRK AASFRGEIWQVPPMFSAIKVGGEKMYDKARRGE++ELS
Sbjct: 348 ADSPVIQREPWEHIKDEDIRKVAASFRGEIWQVPPMFSAIKVGGEKMYDKARRGETVELS 407
Query: 448 PRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKALGSCAHLTALRRDSIGQ 507
PRRISI QFDIERSLEDRQNLIFRV CSKGTYIRSLCAD GKALGSCAHLTALRRDSIG
Sbjct: 408 PRRISIHQFDIERSLEDRQNLIFRVICSKGTYIRSLCADLGKALGSCAHLTALRRDSIGD 467
Query: 508 YSADDAWEFKELEEAITKNYF 528
+S +DAW F ELEE ITK Y
Sbjct: 468 FSVNDAWSFAELEEQITKGYL 488
>gi|222629918|gb|EEE62050.1| hypothetical protein OsJ_16834 [Oryza sativa Japonica Group]
Length = 525
Score = 548 bits (1411), Expect = e-153, Method: Compositional matrix adjust.
Identities = 280/434 (64%), Positives = 309/434 (71%), Gaps = 70/434 (16%)
Query: 149 FVELKPEVVEFNRLHKREEELYFYDTFAYPWEKDKHYKMVYQLEKKYFPDQCLDKAFLDP 208
FVELKPEVV+F RLH REE LYF+D FA PWEKDKHY+M+Y+LEKKYFPDQ LD AF+
Sbjct: 108 FVELKPEVVDFPRLHAREEALYFHDAFALPWEKDKHYRMLYRLEKKYFPDQSLDNAFVPA 167
Query: 209 SADQNVKKMRKKAGGKSEEKKYNKEDDKRLVFFDDQEKKSEKDSILGEDVNVKGEVSEKK 268
A + DK LVFFDD + E + +D +GEV E+K
Sbjct: 168 DA----------------SPPSSDAADKGLVFFDDDDNNKEAEVKKKKDGEDRGEVLERK 211
Query: 269 VEEFFKCLKKVP-NKENEVGSG----------------EPYIVSRSTELPPTWDGPFGTM 311
VE+FF+ LKK P + E V +P++ SR TELPP W+GP GT+
Sbjct: 212 VEDFFRSLKKGPGHGEANVMKAKKKEPPQVRHEADEWPQPHLASRRTELPPRWNGPTGTV 271
Query: 312 VLVNKPKG-------------------------------------WTSFTVCGKLRRLVK 334
VL++KPKG WTSFTVCGKLRRLV
Sbjct: 272 VLIDKPKGDASLSSLDERSNARFKRLHQNLVLFMELNICLSCKPGWTSFTVCGKLRRLVN 331
Query: 335 VKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQ 394
V+KVGHAGTLDPMATGLLIVCVGKATK+VDRYQGM+KGYSGVFRLGEATSTWDADSPVIQ
Sbjct: 332 VQKVGHAGTLDPMATGLLIVCVGKATKVVDRYQGMVKGYSGVFRLGEATSTWDADSPVIQ 391
Query: 395 REPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEKMYDKARRGESIELSPRRISIF 454
REPWEHIKDEDIRK AASFRGEIWQVPPMFSAIKVGGEKMYDKARRGE++ELSPRRISI
Sbjct: 392 REPWEHIKDEDIRKVAASFRGEIWQVPPMFSAIKVGGEKMYDKARRGETVELSPRRISIH 451
Query: 455 QFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKALGSCAHLTALRRDSIGQYSADDAW 514
QFDIERSLEDRQNLIFRV CSKGTYIRSLCAD GKALGSCAHLTALRRDSIG +S +DAW
Sbjct: 452 QFDIERSLEDRQNLIFRVICSKGTYIRSLCADLGKALGSCAHLTALRRDSIGDFSVNDAW 511
Query: 515 EFKELEEAITKNYF 528
F ELEE ITK Y
Sbjct: 512 SFAELEEQITKGYL 525
>gi|326495510|dbj|BAJ85851.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 502
Score = 501 bits (1289), Expect = e-139, Method: Compositional matrix adjust.
Identities = 260/381 (68%), Positives = 286/381 (75%), Gaps = 50/381 (13%)
Query: 178 PWEKDKHYKMVYQLEKKYFPDQCLDKAFLDPSADQNVKKMRKKAGGKSEEKKYNKEDDKR 237
P EKDKHY+M+Y+LEKKYFP+Q LD AF+ A + DK
Sbjct: 142 PGEKDKHYRMLYRLEKKYFPEQSLDNAFVAADAPPQ-----------------PSDADKG 184
Query: 238 LVFFDDQEKKS-EKDSILGEDVNVKGEVSEKKVEEFFKCLKKVPN------------KEN 284
LVFF+++ K E G D KGEV E+KVEEFF+ LKK P K+
Sbjct: 185 LVFFEEEGKDGVEVGRKEGAD---KGEVLERKVEEFFRALKKGPGEGKADDASTAAKKKT 241
Query: 285 EVGS------------GE-----PYIVSRSTELPPTWDGPFGTMVLVNKPKGWTSFTVCG 327
VG GE P++ S TELPP WDGP GT+VL++KPKGWTSFTVCG
Sbjct: 242 VVGGAPRPVKRDAERGGEEDWPRPHLASTRTELPPRWDGPTGTVVLIDKPKGWTSFTVCG 301
Query: 328 KLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSGVFRLGEATSTWD 387
KLRRLVKV+KVGHAGTLDPMATGLLIVCVGKATK+VD+YQGM+KGYSGVFRLGEATSTWD
Sbjct: 302 KLRRLVKVQKVGHAGTLDPMATGLLIVCVGKATKVVDKYQGMVKGYSGVFRLGEATSTWD 361
Query: 388 ADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEKMYDKARRGESIELS 447
ADSPVIQRE WEHIKDEDIRKAAASF GEIWQVPPMFSAIKVGGEKMYDKARRGESIEL+
Sbjct: 362 ADSPVIQRESWEHIKDEDIRKAAASFMGEIWQVPPMFSAIKVGGEKMYDKARRGESIELA 421
Query: 448 PRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKALGSCAHLTALRRDSIGQ 507
PRRISI++FDIERSLEDRQNLIFRVTCSKGTYIRSLCAD GKAL SCAHLTALRRDSIG
Sbjct: 422 PRRISIYKFDIERSLEDRQNLIFRVTCSKGTYIRSLCADLGKALRSCAHLTALRRDSIGD 481
Query: 508 YSADDAWEFKELEEAITKNYF 528
YS +DAW F EL+E ITK Y
Sbjct: 482 YSVNDAWNFDELQEQITKGYL 502
>gi|28195117|gb|AAO33771.1| putative tRNA pseudouridine synthase [Oryza sativa Indica Group]
Length = 458
Score = 491 bits (1263), Expect = e-136, Method: Compositional matrix adjust.
Identities = 272/470 (57%), Positives = 314/470 (66%), Gaps = 73/470 (15%)
Query: 45 SITSTPYPLQYDMIINNPTQPQQSQTRRRPARVNSTNSDENQNPDGELGFDSWVDKKLEK 104
S+T+TPYPL YD+++ P+ P P + ++ + + D L + +
Sbjct: 34 SLTATPYPLYYDLLLYRPSYPN-------PPKSSAADDRHTRPTDDHLDRAKRRYLRKRR 86
Query: 105 EAKTRQPGSDNAEMTKSMRKYYNKRRQRMYGTDSEDEYGKNDDGFVELKPEVVEFNRLHK 164
P + A+ + S FVELKPEVV+F RLH
Sbjct: 87 SRLLPDPDATTAKPSSSSSSE-----------------------FVELKPEVVDFPRLHA 123
Query: 165 REEELYFYDTFAYPWEKDKHYKMVYQLEKKYFPDQCLDKAFL-----DPSADQNVKKMRK 219
REE LYF+D FA PWEKDKHY+M+Y+LEKKYFPDQ LD AF+ PS+D
Sbjct: 124 REEALYFHDAFALPWEKDKHYRMLYRLEKKYFPDQSLDNAFVPADASPPSSDAA------ 177
Query: 220 KAGGKSEEKKYNKEDDKRLVFFDDQEKKSEKDSILGEDVNVKGEVSEKKVEEFFKCLKKV 279
DK LVFFDD E + +D +GEV E+KVE+FF+ LKK
Sbjct: 178 ---------------DKGLVFFDDDGNNKEAEVKKKKDGEDRGEVLERKVEDFFRSLKKG 222
Query: 280 P-NKENEVGSG----------------EPYIVSRSTELPPTWDGPFGTMVLVNKPKGWTS 322
P + E V +P++ SR TELPP W+GP GT+VL++KPKGWTS
Sbjct: 223 PGHGEANVMKAKKKEPPQVRHEADEWPQPHLASRRTELPPRWNGPTGTVVLIDKPKGWTS 282
Query: 323 FTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSGVFRLGEA 382
FTVCGKLRRLV V+KVGHAGTLDPMATGLLIVCVGKATK+VDRYQGM+KGYSGVFRLGEA
Sbjct: 283 FTVCGKLRRLVNVQKVGHAGTLDPMATGLLIVCVGKATKVVDRYQGMVKGYSGVFRLGEA 342
Query: 383 TSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEKMYDKARRGE 442
TSTWDADSPVIQREPWEHIKDEDIRK AASFRGEIWQVPPMFSAIKVGGEKMYDKARRGE
Sbjct: 343 TSTWDADSPVIQREPWEHIKDEDIRKVAASFRGEIWQVPPMFSAIKVGGEKMYDKARRGE 402
Query: 443 SIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKALG 492
++ELSPRRISI QFDIERSLEDRQNLIFRV CSKGTYIRSLCAD GKALG
Sbjct: 403 TVELSPRRISIHQFDIERSLEDRQNLIFRVICSKGTYIRSLCADLGKALG 452
>gi|413942369|gb|AFW75018.1| hypothetical protein ZEAMMB73_733647 [Zea mays]
Length = 386
Score = 364 bits (935), Expect = 5e-98, Method: Compositional matrix adjust.
Identities = 205/393 (52%), Positives = 243/393 (61%), Gaps = 68/393 (17%)
Query: 45 SITSTPYPLQYDMIINNPTQPQQSQTRRRPARVNSTNSDENQNPDGE-LGFDSWVDKKLE 103
S+T+T YPL YD+I++ P P P + ++ +D P E D + L
Sbjct: 38 SLTATRYPLYYDLIVHRPADPN-------PPKSSAAGADRQPQPAPEEQTLDRAKRRYLR 90
Query: 104 KEAKTRQPGSDNAEMTKSMRKYYNKRRQRMYGTDSEDEYGKNDDGFVELKPEVVEFNRLH 163
K P D TK SE FVEL+PEVV+F RLH
Sbjct: 91 KRRSRLLPDPDATTTTKPS------------SLSSE---------FVELRPEVVDFPRLH 129
Query: 164 KREEELYFYDTFAYPWEKDKHYKMVYQLEKKYFPDQCLDKAFLDPSADQNVKKMRKKAGG 223
REE LYF+DTFA PWEKDKHY+M+Y+LEKKYFP Q LD AF+ A R
Sbjct: 130 AREEALYFHDTFAMPWEKDKHYRMLYRLEKKYFPHQSLDNAFVSADAAPASDADRG---- 185
Query: 224 KSEEKKYNKEDDKRLVFFDDQEKKSEKDSILGEDVNV-KGEVSEKKVEEFFKCLKKVP-- 280
LVFFDD++K++E + D KGEV E+KVE+FF+ LKK P
Sbjct: 186 --------------LVFFDDEKKENEGEERAVSDKGANKGEVLERKVEDFFRSLKKGPGQ 231
Query: 281 --NKENEVGS----------------GEPYIVSRSTELPPTWDGPFGTMVLVNKPKGWTS 322
K G+ +PY+V+R+TELPP WDGP GT+VL++KPKGWTS
Sbjct: 232 VDTKAKRPGTEPQQQVKREVRREEERPQPYLVTRTTELPPRWDGPAGTVVLIDKPKGWTS 291
Query: 323 FTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSGVFRLGEA 382
FTVCGKLRRLVKV+KVGHAGTLDPMATGLLIVCVGKATK+VD YQGM+KGYSGVFRLGEA
Sbjct: 292 FTVCGKLRRLVKVQKVGHAGTLDPMATGLLIVCVGKATKIVDSYQGMVKGYSGVFRLGEA 351
Query: 383 TSTWDADSPVIQREPWEHIKDEDIRKAAASFRG 415
TSTWDADSP+IQREPWEHIKDE+IRKAAASF G
Sbjct: 352 TSTWDADSPIIQREPWEHIKDENIRKAAASFMG 384
>gi|302803319|ref|XP_002983413.1| hypothetical protein SELMODRAFT_180168 [Selaginella moellendorffii]
gi|300149098|gb|EFJ15755.1| hypothetical protein SELMODRAFT_180168 [Selaginella moellendorffii]
Length = 447
Score = 333 bits (854), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 184/406 (45%), Positives = 256/406 (63%), Gaps = 23/406 (5%)
Query: 128 KRRQRMYGTDSEDEYGKNDDGFVELKPEVVEFNRLHKREEELYFYDTFAYPWEKDKHYKM 187
+ R+R Y + +E ++D G+ PE+ + ++ LYFY+ A+PWEK +
Sbjct: 6 RERKRRYFSKKLEE-KESDKGW---HPELCTYESEFAKQHALYFYNLLAFPWEKGAFERF 61
Query: 188 VYQLEKKYFPDQCLDKAFLDPSADQNVKKMRKKAGGKSEEKKYN-KEDDKRLVFFDDQEK 246
V +LE+KYFP+ +D L P D K+ + KAG +++KK + + + F+
Sbjct: 62 VDKLERKYFPEDHIDA--LVPPLD---KEPKAKAGKSNKDKKLSARPSSAQSSSFEAYAA 116
Query: 247 KSEKDSILGEDVNVKGEVSEKKVEEFFKCLKKVPNKENEVGSGE-------------PYI 293
+ +++ S + + ++ P+ E S E P +
Sbjct: 117 DASVENVEETSPTRPASGSIEISPDDWEPEASSPDTYAEAVSDETPKRKAADTLTPRPPV 176
Query: 294 VSRSTELPPTWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLI 353
++R+ +LP WDGP GT+VL++KP GWTSF+VC KLR+L+K+KKVGHAGTLDPMATGLLI
Sbjct: 177 ITRTVKLPEEWDGPLGTVVLIDKPHGWTSFSVCAKLRKLLKIKKVGHAGTLDPMATGLLI 236
Query: 354 VCVGKATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASF 413
VCVGKATK D YQ M K YSG RLGEAT ++DAD+ V +R PWEH+ DED++ F
Sbjct: 237 VCVGKATKFTDSYQAMKKFYSGTLRLGEATPSYDADTLVSERMPWEHVTDEDMQIVKEEF 296
Query: 414 RGEIWQVPPMFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVT 473
G I QVPP++SA+KV GE++Y+KARRGE+ ++ PR ISI + +ER DRQN F+V
Sbjct: 297 VGTIRQVPPLYSALKVEGERLYEKARRGETFQIPPRLISIEELQVERDSIDRQNFHFKVA 356
Query: 474 CSKGTYIRSLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKEL 519
CSKGTY+RSLC D G+AL +CAHL ALRRD IG++S DDAW F EL
Sbjct: 357 CSKGTYVRSLCYDLGRALNTCAHLVALRRDKIGEFSVDDAWTFSEL 402
>gi|302754404|ref|XP_002960626.1| hypothetical protein SELMODRAFT_75554 [Selaginella moellendorffii]
gi|300171565|gb|EFJ38165.1| hypothetical protein SELMODRAFT_75554 [Selaginella moellendorffii]
Length = 447
Score = 332 bits (850), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 183/415 (44%), Positives = 260/415 (62%), Gaps = 24/415 (5%)
Query: 128 KRRQRMYGTDSEDEYGKNDDGFVELKPEVVEFNRLHKREEELYFYDTFAYPWEKDKHYKM 187
+R++R + E++ ++D G+ PE+ + ++ LYFY+ A+PWEK +
Sbjct: 7 ERKRRYFSKKLEEK--ESDKGW---HPELCTYESEFAKQHALYFYNLLAFPWEKGAFERF 61
Query: 188 VYQLEKKYFPDQCLDKAFLDPSADQNVKKMRKKAGGKSEEKKYNK-----EDDKRLVFFD 242
V +LE+KYFP+ +D L P D K+ + KAG +++KK + + +
Sbjct: 62 VDKLERKYFPEDHIDA--LVPPLD---KEPKAKAGKSNKDKKLSAWPSSAQSSSFEAYAA 116
Query: 243 DQEKKSEKDSILGEDVNVKGEVSEKKVE-------EFFKCL--KKVPNKENEVGSGEPYI 293
D ++ +D+ + E+S E + + + +K K + + P +
Sbjct: 117 DASVENVEDTSPTRPASGSIEISPDDWEPEASSPDTYAEAVSDEKPKRKAADTLTPRPPV 176
Query: 294 VSRSTELPPTWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLI 353
++R+ LP WDGP GT+VL++KP GWTSF+VC KLR+L+K+KKVGHAGTLDPMATGLLI
Sbjct: 177 ITRTVNLPEEWDGPLGTVVLIDKPHGWTSFSVCAKLRKLLKIKKVGHAGTLDPMATGLLI 236
Query: 354 VCVGKATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASF 413
VCVGKATK D YQ M K YSG RLGEAT ++D D+ V +R PWEH+ DED++ F
Sbjct: 237 VCVGKATKFTDSYQAMKKFYSGTLRLGEATPSYDGDTLVSERMPWEHVTDEDMQIVKEEF 296
Query: 414 RGEIWQVPPMFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVT 473
G I QVPP++SA+KV GE++Y+KARRGE+ ++ PR ISI + +ER DRQN F+V
Sbjct: 297 VGTIRQVPPLYSALKVEGERLYEKARRGETFQIPPRIISIEELQVERDSIDRQNFHFKVA 356
Query: 474 CSKGTYIRSLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAITKNYF 528
CSKGTY+RSLC D G+AL +CAHL ALRRD IG++S DDAW F EL ++
Sbjct: 357 CSKGTYVRSLCYDLGRALNTCAHLVALRRDKIGEFSVDDAWTFSELGSNFADDFL 411
>gi|168042413|ref|XP_001773683.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675071|gb|EDQ61571.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 584
Score = 298 bits (762), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 137/246 (55%), Positives = 177/246 (71%), Gaps = 16/246 (6%)
Query: 291 PYIVSRSTELPPTWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKK------------- 337
P ++ RS+++P WDGP GT+VL++KP GW+SF VCGKLR ++ +KK
Sbjct: 321 PIVIKRSSKVPEDWDGPGGTVVLIDKPLGWSSFAVCGKLRHMLGIKKSLVRDYTCSVKDL 380
Query: 338 --VGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQR 395
VGHAGTLDP+ TGLLIVCVG+ATK D YQ M K YSG R GEAT + DA +PV +
Sbjct: 381 LQVGHAGTLDPLCTGLLIVCVGRATKCADSYQAMTKVYSGTMRFGEATPSLDAGTPVSEE 440
Query: 396 EPWEHIKDEDIRKAAA-SFRGEIWQVPPMFSAIKVGGEKMYDKARRGESIELSPRRISIF 454
PWE I+++DI+ A SF+G+I QVPPM+SAIKV GE++Y KARRGE I + PR + I+
Sbjct: 441 LPWEQIQEQDIQSAVEKSFQGDIMQVPPMYSAIKVKGERLYTKARRGEEIVVPPRPVKIY 500
Query: 455 QFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKALGSCAHLTALRRDSIGQYSADDAW 514
F ++RS ++RQ F + CSKGTYIRSLCAD ++L SCAHLTALRR+ IG +S +DAW
Sbjct: 501 DFQLKRSSKNRQEWDFHIVCSKGTYIRSLCADLARSLNSCAHLTALRREKIGNFSVEDAW 560
Query: 515 EFKELE 520
+ELE
Sbjct: 561 PIEELE 566
>gi|375152126|gb|AFA36521.1| pseudouridylate synthase transporter, partial [Lolium perenne]
Length = 136
Score = 273 bits (699), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 128/136 (94%), Positives = 134/136 (98%)
Query: 343 TLDPMATGLLIVCVGKATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIK 402
TLDPMATGLLIVCVGKATK+VDRYQGM+KGYSGVFRLGEATSTWDADSPVIQRE WEHIK
Sbjct: 1 TLDPMATGLLIVCVGKATKVVDRYQGMVKGYSGVFRLGEATSTWDADSPVIQRESWEHIK 60
Query: 403 DEDIRKAAASFRGEIWQVPPMFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSL 462
DEDIRKAAASF GEIWQVPPMFSAIKVGGEKMYDKARRGE++ELSPRRISI++FDIERSL
Sbjct: 61 DEDIRKAAASFMGEIWQVPPMFSAIKVGGEKMYDKARRGETVELSPRRISIYKFDIERSL 120
Query: 463 EDRQNLIFRVTCSKGT 478
EDRQNLIFRVTCSKGT
Sbjct: 121 EDRQNLIFRVTCSKGT 136
>gi|384247163|gb|EIE20650.1| putative tRNA pseudouridine synthase [Coccomyxa subellipsoidea
C-169]
Length = 235
Score = 263 bits (673), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 124/211 (58%), Positives = 157/211 (74%)
Query: 312 VLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIK 371
VLV+KP+ WTSF VCGKLR +KVKKVGHAGTLDPMATGLLI+C G+ TK +D + M K
Sbjct: 18 VLVDKPQDWTSFDVCGKLRGALKVKKVGHAGTLDPMATGLLIICTGQGTKQIDDFVAMEK 77
Query: 372 GYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGG 431
YSG RLG+AT ++DA S + + PWE I DED+ A +F G+I Q PPMFSAIK+ G
Sbjct: 78 AYSGTLRLGQATPSYDAMSEIEEELPWEDITDEDLEAAKEAFVGDILQQPPMFSAIKIKG 137
Query: 432 EKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKAL 491
E++Y ARRGE +E R ++I F+++R +RQ++ F+VTCSKGTYIRSL D GKA+
Sbjct: 138 ERLYKAARRGEVVERQSRPVTIHSFELQRDESNRQDVHFKVTCSKGTYIRSLAHDLGKAV 197
Query: 492 GSCAHLTALRRDSIGQYSADDAWEFKELEEA 522
GS AHLTALRR+SIG++S DAW +L A
Sbjct: 198 GSAAHLTALRRESIGEHSVADAWSVLDLVAA 228
>gi|307106831|gb|EFN55076.1| hypothetical protein CHLNCDRAFT_12296, partial [Chlorella
variabilis]
Length = 221
Score = 261 bits (668), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 125/221 (56%), Positives = 159/221 (71%), Gaps = 8/221 (3%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKV--------KKVGHAGTLDPMATGLLIVCVGKATKL 362
++LV+KPK WTSF VCGKLR + KVGHAGTLDPMATGLLIVCVG+ TK
Sbjct: 1 VLLVDKPKEWTSFDVCGKLRPALAALLGKKNREVKVGHAGTLDPMATGLLIVCVGRGTKA 60
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
VD + M K YSG RLGE T ++DAD+PV QR PWEHI D+D+ +A GEI Q+PP
Sbjct: 61 VDAFMAMHKCYSGTLRLGEGTPSYDADTPVEQRAPWEHITDDDLLRARDGLVGEIQQLPP 120
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRS 482
M+SAIK+GG+K+ D AR+G+ +E PR +++ FD+ R + Q + FRV CSKGTYIRS
Sbjct: 121 MYSAIKIGGQKLCDVARKGKELERQPRTVTVESFDLWRDAGEAQCVHFRVVCSKGTYIRS 180
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
L D G ALGS AHLTALRR++IGQYS + AW+ ++L + +
Sbjct: 181 LAHDLGAALGSAAHLTALRREAIGQYSVEGAWDVRQLAQQL 221
>gi|308806718|ref|XP_003080670.1| putative tRNA synthase (ISS) [Ostreococcus tauri]
gi|116059131|emb|CAL54838.1| putative tRNA synthase (ISS) [Ostreococcus tauri]
Length = 320
Score = 239 bits (610), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 117/215 (54%), Positives = 151/215 (70%), Gaps = 4/215 (1%)
Query: 312 VLVNKPKGWTSFTVCGKLRRLVK---VKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQG 368
+LV+KPKG+TSF V ++RRL K VKKVGH GTLDPMATGLLI+CVG+ATK VD Y G
Sbjct: 45 ILVDKPKGYTSFDVVARVRRLSKQRGVKKVGHCGTLDPMATGLLILCVGRATKSVDEYTG 104
Query: 369 MIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
M K Y+G RLGE T + DAD V +REPWEH+ DE +R+ A + G I Q+PPM+SAIK
Sbjct: 105 MDKTYTGTIRLGEGTPSQDADEAVNEREPWEHVTDEALRERARALTGPIEQLPPMYSAIK 164
Query: 429 VGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFG 488
V G+++Y AR G +E R + I +F +ER ED Q++ F SKGTY+R+L D
Sbjct: 165 VDGKRLYKSAREGVEVERKTRPVVIHEFHVERDSEDAQSVHFSAHVSKGTYVRTLAYDLC 224
Query: 489 KALGSCAHLTALRRDSI-GQYSADDAWEFKELEEA 522
K+LG+ HLTALRR I G++ +DAW ++L EA
Sbjct: 225 KSLGTTGHLTALRRTKIGGEFDVEDAWSIEQLAEA 259
>gi|255078814|ref|XP_002502987.1| predicted protein [Micromonas sp. RCC299]
gi|226518253|gb|ACO64245.1| predicted protein [Micromonas sp. RCC299]
Length = 230
Score = 238 bits (608), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 117/216 (54%), Positives = 150/216 (69%), Gaps = 3/216 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLR---RLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQ 367
++L++KPKGWTSF V GK R R + KKVGH GTLDP ATGLLI+CVGKATK+VD +
Sbjct: 2 VLLIDKPKGWTSFDVVGKTRWLSRRMGSKKVGHCGTLDPNATGLLILCVGKATKMVDSFT 61
Query: 368 GMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAI 427
GM K Y+G +LGE T + D V +R PWEH+ D D+ A + G+I Q+PPMFSAI
Sbjct: 62 GMDKVYTGTMKLGEGTPSQDCCEEVDERLPWEHVSDADLAAGAKAMEGDIKQIPPMFSAI 121
Query: 428 KVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADF 487
KV GE++Y ARRGE++E R +I F++ R D Q FRV CSKGTY+R+L D
Sbjct: 122 KVKGERLYKAARRGETVERKERACTINSFEVWRDKVDSQLAHFRVDCSKGTYVRTLAHDL 181
Query: 488 GKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
G+ LG+ AHLT LRR+SIG++S +DAW + L EA
Sbjct: 182 GRNLGTVAHLTELRRESIGEHSVEDAWTVESLFEAC 217
>gi|159482250|ref|XP_001699184.1| hypothetical protein CHLREDRAFT_121340 [Chlamydomonas reinhardtii]
gi|158273031|gb|EDO98824.1| predicted protein [Chlamydomonas reinhardtii]
Length = 207
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 114/201 (56%), Positives = 143/201 (71%), Gaps = 6/201 (2%)
Query: 311 MVLVNKPKGWTSFTVCGKLR---RLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQ 367
++LV+KP GWTSF VCGK+R R ++VKKVGHAGTLDP A+GLLIVC GK TK D +Q
Sbjct: 8 VILVDKPLGWTSFDVCGKIRNMIRFLEVKKVGHAGTLDPNASGLLIVCTGKGTKFCDDFQ 67
Query: 368 GMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAI 427
K YSG RLGE T ++DA+S V +R WEHI DE+++ AAA + G I QVPPM
Sbjct: 68 AQDKEYSGTLRLGEFTPSYDAESEVTERSAWEHITDEELQAAAAKYVGNIMQVPPM---A 124
Query: 428 KVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADF 487
+VGG KMY AR G+++EL PR ++I + R +RQ++ F V CSKGTYIRSL D
Sbjct: 125 RVGGMKMYQLAREGQALELPPRPVTISSLRVWRDDANRQDVHFYVHCSKGTYIRSLAHDL 184
Query: 488 GKALGSCAHLTALRRDSIGQY 508
G+ALGS AHL ALRR++ G Y
Sbjct: 185 GRALGSHAHLVALRREASGDY 205
>gi|145349328|ref|XP_001419088.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144579319|gb|ABO97381.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 279
Score = 228 bits (582), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 111/216 (51%), Positives = 149/216 (68%), Gaps = 4/216 (1%)
Query: 312 VLVNKPKGWTSFTVCGKLRRLVK---VKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQG 368
+L++KP+ +TSF V ++RRL + VKKVGH GTLDPMATGLLI+CVGKATK V+ Y G
Sbjct: 48 ILMDKPQKYTSFDVVARVRRLSRERGVKKVGHCGTLDPMATGLLILCVGKATKSVEEYSG 107
Query: 369 MIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
M K Y+G +LGE T + DAD V +REPWEH+ D ++R+ A G I Q+PPM+SAIK
Sbjct: 108 MDKTYTGTIKLGEGTPSQDADEEVNEREPWEHVTDVELREGARKLTGAIKQLPPMYSAIK 167
Query: 429 VGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFG 488
V G+++Y AR G +E R + I +F++ER ED Q + F SKGTY+R+L D
Sbjct: 168 VNGKRLYKSAREGVEVERKHRDVVIHEFEVERDAEDAQIVHFSAHVSKGTYVRTLAYDLC 227
Query: 489 KALGSCAHLTALRRDSIG-QYSADDAWEFKELEEAI 523
K+LG+ HLTALRR IG ++ +DAW ++L EA
Sbjct: 228 KSLGTTGHLTALRRTKIGSEFDVEDAWTIEQLAEAC 263
>gi|412991268|emb|CCO16113.1| tRNA pseudouridine synthase B [Bathycoccus prasinos]
Length = 341
Score = 219 bits (557), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 118/253 (46%), Positives = 165/253 (65%), Gaps = 17/253 (6%)
Query: 289 GEPYIVSRSTELPPT---WDGPF-------GTMVLVNKPKGWTSFTVCGKLRRLVK---V 335
G P VS++ PT W GP G + LV+KP+ WTSF VC K++ + K V
Sbjct: 75 GPPLEVSKTLNRRPTVLEWRGPNFPQDQSDGLVFLVDKPQEWTSFDVCAKIKSMSKKMGV 134
Query: 336 KKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQR 395
KK+GH GTLDPMATGLLIV +G+ATKL D YQ +K Y+G +LGE T++ DAD+ VI+
Sbjct: 135 KKIGHCGTLDPMATGLLIVVIGRATKLADEYQAKVKTYTGTIKLGEKTASGDADNEVIET 194
Query: 396 EPW-EHIKDEDIRKAA-ASFRGEIWQVPPMFSAIKVGGEKMYDKARRGESIELSPRRISI 453
+P+ E I +E +AA AS G+I Q+PPMFSA+ V G+++Y+ AR G+++E PR + +
Sbjct: 195 KPFGEDIVNEASMEAARASLIGDIEQIPPMFSAVHVDGKRLYESAREGKTVERKPRPVHV 254
Query: 454 FQFDIE-RSLEDRQNLI-FRVTCSKGTYIRSLCADFGKALGSCAHLTALRRDSIGQYSAD 511
F I+ R E+ +LI F VTCSKGTY+R+L DF + +G+ HL LRR+ IG +
Sbjct: 255 GAFSIKRRETENETHLIDFEVTCSKGTYVRTLAEDFCEKMGTVGHLVKLRREKIGDFDVK 314
Query: 512 DAWEFKELEEAIT 524
DA+E L + I+
Sbjct: 315 DAFELPALLDEIS 327
>gi|227539721|ref|ZP_03969770.1| tRNA pseudouridine synthase [Sphingobacterium spiritivorum ATCC
33300]
gi|227240363|gb|EEI90378.1| tRNA pseudouridine synthase [Sphingobacterium spiritivorum ATCC
33300]
Length = 236
Score = 218 bits (555), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 111/228 (48%), Positives = 148/228 (64%), Gaps = 4/228 (1%)
Query: 298 TELPPTWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVK--VKKVGHAGTLDPMATGLLIVC 355
TE T+ G M+L++KP WTSF V GK+R +K KVGHAGTLDP+ATGLLIVC
Sbjct: 6 TENSQTFHFAEGQMLLIDKPLTWTSFDVVGKIRNTIKPLKLKVGHAGTLDPLATGLLIVC 65
Query: 356 VGKATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRG 415
GK TK +D +Q K Y+G+ LG T ++D ++ + QR I +E I A SF G
Sbjct: 66 TGKMTKQIDSFQAEDKEYTGIITLGATTPSYDLETEIDQRFDISGITEEMIFDTARSFEG 125
Query: 416 EIWQVPPMFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCS 475
EI Q PP SAIK+ GE++Y+KARRGE +EL R+++I F IE+ + ++ FR++CS
Sbjct: 126 EISQFPPAHSAIKINGERVYEKARRGEEVELKSRKVTINSFAIEKI--ELPHVHFRISCS 183
Query: 476 KGTYIRSLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
KGTYIRS+ DFGK L + +HL+ LRR G Y D+AW + L E I
Sbjct: 184 KGTYIRSIANDFGKLLNNGSHLSELRRTKSGNYHVDNAWNLENLIEVI 231
>gi|375012581|ref|YP_004989569.1| tRNA pseudouridine 55 synthase [Owenweeksia hongkongensis DSM
17368]
gi|359348505|gb|AEV32924.1| tRNA pseudouridine 55 synthase [Owenweeksia hongkongensis DSM
17368]
Length = 238
Score = 217 bits (553), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 111/221 (50%), Positives = 148/221 (66%), Gaps = 8/221 (3%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVK------KVGHAGTLDPMATGLLIVCVGKATKL 362
G ++L++KP WTSF K+R +K + KVGHAGTLDP+ATGLLI+C GK TK
Sbjct: 16 GQVLLIDKPLEWTSFDAVNKIRYAIKKRFSLKKIKVGHAGTLDPLATGLLIICTGKFTKQ 75
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ Y G K Y+G RLGE T ++D ++ V + P HI +E I KA +F G+I QVPP
Sbjct: 76 INEYMGQEKEYTGTIRLGETTPSYDLETEVNETFPTNHITEEAIHKATENFIGDIEQVPP 135
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRS 482
+FSAIK GE+ Y+ AR+GE ++L+ R ++I +F+I + + QN+ FRV+CSKGTYIRS
Sbjct: 136 LFSAIKKDGERAYELARKGEDVKLNARVVNIREFEI--TAIEGQNVHFRVSCSKGTYIRS 193
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
L DFG AL S AHLTALRR IG DDA + E +I
Sbjct: 194 LAHDFGIALNSGAHLTALRRTRIGDSKIDDATDVLEFVNSI 234
>gi|300773862|ref|ZP_07083731.1| tRNA pseudouridine synthase B [Sphingobacterium spiritivorum ATCC
33861]
gi|300760033|gb|EFK56860.1| tRNA pseudouridine synthase B [Sphingobacterium spiritivorum ATCC
33861]
Length = 236
Score = 216 bits (551), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 111/228 (48%), Positives = 148/228 (64%), Gaps = 4/228 (1%)
Query: 298 TELPPTWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVK--VKKVGHAGTLDPMATGLLIVC 355
TE T+ G M+L++KP WTSF V GK+R +K KVGHAGTLDP+ATGLLIVC
Sbjct: 6 TENFQTFHFAEGQMLLIDKPLTWTSFDVVGKIRNTLKPLKLKVGHAGTLDPLATGLLIVC 65
Query: 356 VGKATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRG 415
GK TK +D +Q K Y+G+ LG T ++D ++ + QR I +E I A SF G
Sbjct: 66 TGKMTKQIDSFQAEDKEYTGIITLGATTPSYDLETEIDQRFDISGITEEMIFDTARSFEG 125
Query: 416 EIWQVPPMFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCS 475
EI Q PP SAIK+ GE++Y+KARRGE +EL R+++I F IE+ + ++ FR++CS
Sbjct: 126 EINQFPPAHSAIKINGERVYEKARRGEEVELKSRKVTINSFAIEKI--ELPHVSFRISCS 183
Query: 476 KGTYIRSLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
KGTYIRS+ DFGK L + +HL+ LRR G Y D+AW + L E I
Sbjct: 184 KGTYIRSIANDFGKLLNNGSHLSELRRTKSGNYHVDNAWNLENLIEVI 231
>gi|387792085|ref|YP_006257150.1| tRNA pseudouridine 55 synthase [Solitalea canadensis DSM 3403]
gi|379654918|gb|AFD07974.1| tRNA pseudouridine 55 synthase [Solitalea canadensis DSM 3403]
Length = 257
Score = 214 bits (545), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 111/217 (51%), Positives = 140/217 (64%), Gaps = 4/217 (1%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVKK--VGHAGTLDPMATGLLIVCVGKATKLVDRY 366
G ++LVNKP WTSF V GK+R K K VGHAGTLDP+A GLLI+C GK TK +D Y
Sbjct: 37 GEVLLVNKPYKWTSFDVVGKIRNAFKPAKIKVGHAGTLDPLAKGLLIICTGKFTKKIDDY 96
Query: 367 QGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSA 426
Q K Y+G F LG T ++D ++ V R HI I F GEI QV P SA
Sbjct: 97 QAQEKEYTGTFVLGATTPSYDMETEVDVRYDIRHITPAHILDTIPHFLGEIEQVAPAHSA 156
Query: 427 IKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCAD 486
+K+ GE+ Y+KARRGE ++L R+++I +F+I R D + FRV CSKGTYIRSL D
Sbjct: 157 LKINGERAYEKARRGEEVQLKSRKVTISEFEITRI--DLPEVDFRVVCSKGTYIRSLAND 214
Query: 487 FGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
FGK L + A+L+ALRR IGQ+S D++WE EL I
Sbjct: 215 FGKKLQNGAYLSALRRTRIGQFSVDNSWEIMELVNKI 251
>gi|343087491|ref|YP_004776786.1| tRNA pseudouridine synthase B [Cyclobacterium marinum DSM 745]
gi|342356025|gb|AEL28555.1| tRNA pseudouridine synthase B [Cyclobacterium marinum DSM 745]
Length = 229
Score = 214 bits (544), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 106/219 (48%), Positives = 146/219 (66%), Gaps = 2/219 (0%)
Query: 307 PFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRY 366
P+G + LVNKP WTSF V K+R +K+KKVGHAGTLDP+ATGLLIVC GK TK +++Y
Sbjct: 7 PYGEVFLVNKPYQWTSFDVVKKIRNTLKIKKVGHAGTLDPLATGLLIVCAGKETKNIEKY 66
Query: 367 QGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSA 426
Q K YSG F LG+ T ++D + V H+ EDI KA AS G+I Q+PP SA
Sbjct: 67 QAQKKEYSGTFVLGKTTESFDLEQEVKTVADPFHLTREDIEKAVASLTGDIMQIPPNHSA 126
Query: 427 IKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCAD 486
IK G+++Y+ AR+G ++ L PR +++ F+I + + FR+ CSKGTYIRSL D
Sbjct: 127 IKKDGKRVYESARKGITVVLDPRPVTVEIFEITGI--ELPEIHFRIVCSKGTYIRSLARD 184
Query: 487 FGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAITK 525
G L A+++ALRRD+IG++ +AW+ ++L E I K
Sbjct: 185 LGDKLEVGAYMSALRRDAIGEFKLKNAWQLEQLIEKIKK 223
>gi|326797983|ref|YP_004315802.1| tRNA pseudouridine synthase B [Sphingobacterium sp. 21]
gi|326548747|gb|ADZ77132.1| tRNA pseudouridine synthase B [Sphingobacterium sp. 21]
Length = 249
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 108/224 (48%), Positives = 148/224 (66%), Gaps = 4/224 (1%)
Query: 302 PTWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKK--VGHAGTLDPMATGLLIVCVGKA 359
P +D G ++L++KP WTSF V GK+R +K K VGHAGTLDP+ATGLLIVC GK
Sbjct: 11 PRFDFTAGEVLLIDKPYKWTSFDVVGKIRNALKPLKLKVGHAGTLDPLATGLLIVCTGKR 70
Query: 360 TKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQ 419
TK +D Q K Y G F LG T ++D ++ ++ ++D+ +A+ +F G I Q
Sbjct: 71 TKTIDELQAQEKEYIGTFTLGATTPSYDLETIPDSFFDITNLTEQDLLRASLTFVGAIEQ 130
Query: 420 VPPMFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTY 479
PP+ SA+K+ GE++Y+KARRGES+EL PRR++I++F++ R N FRV CSKGTY
Sbjct: 131 YPPVHSAVKMQGERLYEKARRGESVELKPRRVTIYEFELTRIALPEVN--FRVVCSKGTY 188
Query: 480 IRSLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
IRSL DFGKA+G+ A+L+ LRR G + DAW EL + I
Sbjct: 189 IRSLAHDFGKAVGAGAYLSELRRTRSGNFHIRDAWNVLELSDHI 232
>gi|311747030|ref|ZP_07720815.1| tRNA pseudouridine synthase B [Algoriphagus sp. PR1]
gi|126578731|gb|EAZ82895.1| tRNA pseudouridine synthase B [Algoriphagus sp. PR1]
Length = 226
Score = 211 bits (538), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 100/217 (46%), Positives = 144/217 (66%), Gaps = 2/217 (0%)
Query: 307 PFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRY 366
P+G + L++KP WTSF V K+R +K+KKVGHAGTLDP+ATGLLI+C GK TK ++ +
Sbjct: 5 PYGEVFLIDKPLEWTSFDVVKKVRNALKIKKVGHAGTLDPLATGLLIICAGKMTKQIESF 64
Query: 367 QGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSA 426
G K YSG F LGE T ++D + PV H+ +D++ A A G+I QVPPM SA
Sbjct: 65 MGQEKEYSGTFVLGETTESFDLEKPVTPVADPSHLTIDDVKAAVAELTGDILQVPPMHSA 124
Query: 427 IKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCAD 486
IKVGG+++Y+ AR+G +++ PR + + +F+I + + + FR++CSKGTYIRSL D
Sbjct: 125 IKVGGKRVYESARKGIDVKMEPRPVQVREFEITKF--ENHVVSFRISCSKGTYIRSLARD 182
Query: 487 FGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
G+ LG A++++L R IG + +A E L E I
Sbjct: 183 LGEKLGVGAYMSSLIRTRIGDFQLSEAHELNSLIEEI 219
>gi|413942367|gb|AFW75016.1| hypothetical protein ZEAMMB73_733647 [Zea mays]
Length = 315
Score = 211 bits (537), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 134/316 (42%), Positives = 168/316 (53%), Gaps = 68/316 (21%)
Query: 45 SITSTPYPLQYDMIINNPTQPQQSQTRRRPARVNSTNSDENQNPDGE-LGFDSWVDKKLE 103
S+T+T YPL YD+I++ P P P + ++ +D P E D + L
Sbjct: 38 SLTATRYPLYYDLIVHRPADPN-------PPKSSAAGADRQPQPAPEEQTLDRAKRRYLR 90
Query: 104 KEAKTRQPGSDNAEMTKSMRKYYNKRRQRMYGTDSEDEYGKNDDGFVELKPEVVEFNRLH 163
K P D TK SE FVEL+PEVV+F RLH
Sbjct: 91 KRRSRLLPDPDATTTTKPS------------SLSSE---------FVELRPEVVDFPRLH 129
Query: 164 KREEELYFYDTFAYPWEKDKHYKMVYQLEKKYFPDQCLDKAFLDPSADQNVKKMRKKAGG 223
REE LYF+DTFA PWEKDKHY+M+Y+LEKKYFP Q LD AF+ A R
Sbjct: 130 AREEALYFHDTFAMPWEKDKHYRMLYRLEKKYFPHQSLDNAFVSADAAPASDADRG---- 185
Query: 224 KSEEKKYNKEDDKRLVFFDDQEKKSEKDSILGEDVNV-KGEVSEKKVEEFFKCLKKVP-- 280
LVFFDD++K++E + D KGEV E+KVE+FF+ LKK P
Sbjct: 186 --------------LVFFDDEKKENEGEERAVSDKGANKGEVLERKVEDFFRSLKKGPGQ 231
Query: 281 --NKENEVGS----------------GEPYIVSRSTELPPTWDGPFGTMVLVNKPKGWTS 322
K G+ +PY+V+R+TELPP WDGP GT+VL++KPKGWTS
Sbjct: 232 VDTKAKRPGTEPQQQVKREVRREEERPQPYLVTRTTELPPRWDGPAGTVVLIDKPKGWTS 291
Query: 323 FTVCGKLRRLVKVKKV 338
FTVCGKLRRLVKV+KV
Sbjct: 292 FTVCGKLRRLVKVQKV 307
>gi|312128869|ref|YP_003996209.1| tRNA pseudouridine synthase b [Leadbetterella byssophila DSM 17132]
gi|311905415|gb|ADQ15856.1| tRNA pseudouridine synthase B [Leadbetterella byssophila DSM 17132]
Length = 226
Score = 211 bits (536), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 105/217 (48%), Positives = 145/217 (66%), Gaps = 4/217 (1%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVKKV--GHAGTLDPMATGLLIVCVGKATKLVDRY 366
G ++L++KP WTSF KL+ K K+ GHAGTLDP+ATGLL++CVGK TK ++ Y
Sbjct: 8 GQVLLIDKPLNWTSFDAVNKLKYAFKPHKIKIGHAGTLDPLATGLLVICVGKKTKEIETY 67
Query: 367 QGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSA 426
QG K Y+G LG T ++D ++ + P HI E + +A SF G I Q+PP+FSA
Sbjct: 68 QGQKKVYTGKIMLGSTTPSFDLETEIDATYPTAHITKEGLEEARKSFLGTIAQIPPVFSA 127
Query: 427 IKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCAD 486
IKV G++ Y+ AR+G+S+EL R I+I F+++ + + L F+VTCSKGTYIRSL D
Sbjct: 128 IKVDGKRAYESARKGDSVELKAREITIENFELDDT--NFPELAFKVTCSKGTYIRSLARD 185
Query: 487 FGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
G ALGS AHLTALRR+ IG++ DA + +E + I
Sbjct: 186 LGTALGSGAHLTALRREKIGEFDVKDALQVQEAVDKI 222
>gi|395221166|ref|ZP_10402875.1| tRNA pseudouridine synthase B [Pontibacter sp. BAB1700]
gi|394453368|gb|EJF08311.1| tRNA pseudouridine synthase B [Pontibacter sp. BAB1700]
Length = 231
Score = 211 bits (536), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 99/213 (46%), Positives = 145/213 (68%), Gaps = 2/213 (0%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQG 368
G ++L++KP WTSF V K+R ++VKK+GHAGTLDP+A+GLLI+C GK TK +D Q
Sbjct: 8 GEILLLDKPLTWTSFDVVKKVRNTLRVKKIGHAGTLDPLASGLLILCTGKFTKRIDEIQA 67
Query: 369 MIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
K Y+G LG+ T ++D ++PV + + H+ EDI+ AA+SF G I Q+PP++SA+
Sbjct: 68 QEKEYTGTITLGQTTPSYDLETPVSESKDISHLTPEDIQAAASSFVGTIEQIPPIYSAVM 127
Query: 429 VGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFG 488
+ G++ YD AR+G+ E+ PR ++I FDI + + F+V CSKGTYIRSL D G
Sbjct: 128 IDGKRAYDLARKGKEAEMKPRTVTIKAFDITNI--EGAVVSFKVICSKGTYIRSLAHDLG 185
Query: 489 KALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
+ LG AHL+AL R IG+Y +DA ++++E
Sbjct: 186 QKLGVGAHLSALVRTRIGEYKLEDALTIEDIQE 218
>gi|313674894|ref|YP_004052890.1| tRNA pseudouridine synthase b [Marivirga tractuosa DSM 4126]
gi|312941592|gb|ADR20782.1| tRNA pseudouridine synthase B [Marivirga tractuosa DSM 4126]
Length = 231
Score = 209 bits (531), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 104/212 (49%), Positives = 144/212 (67%), Gaps = 4/212 (1%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQG 368
G ++L++KP WTSF V KL+ +KVKK+GHAGTLDP+ATGLLI+C GK TK +++YQ
Sbjct: 11 GKVLLIDKPLNWTSFDVVKKLKFTLKVKKIGHAGTLDPLATGLLILCTGKMTKSIEKYQA 70
Query: 369 MIKGYSGVFRLGEATSTWDADS-PVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAI 427
K Y+G F LG T ++D ++ P Q+E H+ ED++ A F GEI Q PP+FSA+
Sbjct: 71 QEKEYTGEFTLGYTTPSYDLETEPEFQKET-SHLTLEDLKSNTAYFTGEIEQTPPIFSAV 129
Query: 428 KVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADF 487
K GG++ Y AR G+ ++L R ++I +F+I E++ + FRV CSKGTYIRSL DF
Sbjct: 130 KTGGKRAYSLAREGKEVKLKSRVVTISEFEITDFKENK--VSFRVRCSKGTYIRSLAHDF 187
Query: 488 GKALGSCAHLTALRRDSIGQYSADDAWEFKEL 519
G+ LG A+L+ALRR IG +S +DA E
Sbjct: 188 GEKLGVGAYLSALRRTKIGDFSVEDADNLNEF 219
>gi|404448776|ref|ZP_11013768.1| tRNA pseudouridine synthase B [Indibacter alkaliphilus LW1]
gi|403765500|gb|EJZ26378.1| tRNA pseudouridine synthase B [Indibacter alkaliphilus LW1]
Length = 227
Score = 208 bits (530), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 100/217 (46%), Positives = 145/217 (66%), Gaps = 2/217 (0%)
Query: 307 PFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRY 366
P+G + L+NKP WTSF V K+R +++KKVGHAGTLDP+ATGLLIVC G+ TK ++ Y
Sbjct: 5 PYGEVFLINKPLEWTSFDVVKKVRNALRIKKVGHAGTLDPLATGLLIVCAGRKTKSIESY 64
Query: 367 QGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSA 426
G K Y+GVF +G+ T ++D + PVI+ I + ++ AAA G+I Q+PPM SA
Sbjct: 65 MGQEKEYTGVFVIGKTTESFDLEHPVIEVADASAITLDQVKAAAAELTGDILQIPPMHSA 124
Query: 427 IKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCAD 486
IKV G+++Y+ AR+G +++ PR +S+ F+I + + + FR+ CSKGTYIRSL D
Sbjct: 125 IKVDGKRVYEAARKGHEVKMDPRPVSVSTFEITKF--ENPEVHFRIICSKGTYIRSLARD 182
Query: 487 FGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
G LG A+++AL R IG++S + A E L + I
Sbjct: 183 LGDILGVGAYMSALCRTRIGEHSLEQAEELDLLIQKI 219
>gi|390945061|ref|YP_006408822.1| tRNA pseudouridine synthase B [Belliella baltica DSM 15883]
gi|390418489|gb|AFL86067.1| tRNA pseudouridine synthase B [Belliella baltica DSM 15883]
Length = 228
Score = 208 bits (529), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 100/217 (46%), Positives = 145/217 (66%), Gaps = 2/217 (0%)
Query: 307 PFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRY 366
P+G + L++KP WTSF V K+R +K+KKVGHAGTLDP+ATGLLIVC GK TK +D +
Sbjct: 6 PYGEVFLIDKPLEWTSFDVVKKVRNALKIKKVGHAGTLDPLATGLLIVCAGKKTKSIDVF 65
Query: 367 QGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSA 426
G K Y+G F LG+ T ++D + +I+ H+ ED++ A A G+I Q+PPM SA
Sbjct: 66 MGQEKEYTGTFVLGKTTESFDREKEIIEVADPFHLTLEDVKNAVAELTGDILQIPPMHSA 125
Query: 427 IKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCAD 486
IKV G+++Y+ AR+G +++ PR +++ +F+I R D + FR+ CSKGTYIRSL D
Sbjct: 126 IKVDGKRVYESARKGIEVKMEPRPVTVSEFEITRF--DLPEIDFRIVCSKGTYIRSLARD 183
Query: 487 FGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
G+ L A+++AL R IG++ +DA + L E I
Sbjct: 184 LGEKLKVGAYMSALTRTRIGEFRLEDAEDLTTLIEKI 220
>gi|149280008|ref|ZP_01886133.1| putative tRNA pseudouridine synthase [Pedobacter sp. BAL39]
gi|149229205|gb|EDM34599.1| putative tRNA pseudouridine synthase [Pedobacter sp. BAL39]
Length = 258
Score = 208 bits (529), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 105/220 (47%), Positives = 143/220 (65%), Gaps = 4/220 (1%)
Query: 302 PTWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKK--VGHAGTLDPMATGLLIVCVGKA 359
P ++ G ++L+NKP WTSF V GK+R +K K VGHAGTLDP+ATGLLI+C GK
Sbjct: 25 PEFNFAEGELLLINKPYKWTSFDVVGKIRNSLKPLKLKVGHAGTLDPLATGLLIICTGKL 84
Query: 360 TKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQ 419
TK +D +Q K Y+G LG T ++D ++ V Q P E I +EDI A A F+G+I Q
Sbjct: 85 TKQIDSFQAEEKEYTGTMVLGATTPSFDMETAVDQEFPLEGITEEDIYAATAPFKGDIQQ 144
Query: 420 VPPMFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTY 479
PP SA+KV GE++Y KARRGE EL R +++ F+I R + + FR+ CSKGTY
Sbjct: 145 YPPAHSAVKVNGERLYVKARRGEETELRLRNVTVSAFEITRI--ELPEIDFRIVCSKGTY 202
Query: 480 IRSLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKEL 519
IRSL +DFG+ L + A+L+ L R G + ++A+E EL
Sbjct: 203 IRSLVSDFGRQLNNGAYLSKLTRTRSGSFQLENAYEVAEL 242
>gi|441501636|ref|ZP_20983724.1| tRNA pseudouridine synthase B [Fulvivirga imtechensis AK7]
gi|441434598|gb|ELR68054.1| tRNA pseudouridine synthase B [Fulvivirga imtechensis AK7]
Length = 220
Score = 207 bits (528), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 99/213 (46%), Positives = 144/213 (67%), Gaps = 2/213 (0%)
Query: 307 PFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRY 366
P GT++LV+KP WTSF V KL+ +KVKK+GHAGTLDP+ATGLL++C GK TK +++Y
Sbjct: 6 PEGTVILVDKPLEWTSFDVVKKLKYFLKVKKIGHAGTLDPLATGLLVLCTGKMTKQIEKY 65
Query: 367 QGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSA 426
Q K Y+G LG+ T ++D ++ + H+++ +I +A F G I Q PP FSA
Sbjct: 66 QAQEKEYTGKLILGKTTPSFDLETEIDSETDITHLEEREIYEATQQFTGLIDQTPPAFSA 125
Query: 427 IKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCAD 486
IKV G++ Y+ AR+GE++EL R+I I F++ + + FRV CSKGTYIRSL D
Sbjct: 126 IKVKGKRAYESARKGEAVELKSRQIEISLFEVTET--KLPEVTFRVVCSKGTYIRSLVRD 183
Query: 487 FGKALGSCAHLTALRRDSIGQYSADDAWEFKEL 519
FG+ALG A+++ LRR IG+++ + A +E+
Sbjct: 184 FGQALGVGAYMSELRRTRIGEFTVEQAQTIEEI 216
>gi|268316870|ref|YP_003290589.1| tRNA pseudouridine synthase B [Rhodothermus marinus DSM 4252]
gi|345303216|ref|YP_004825118.1| tRNA pseudouridine synthase B [Rhodothermus marinus SG0.5JP17-172]
gi|262334404|gb|ACY48201.1| tRNA pseudouridine synthase B [Rhodothermus marinus DSM 4252]
gi|345112449|gb|AEN73281.1| tRNA pseudouridine synthase B [Rhodothermus marinus SG0.5JP17-172]
Length = 249
Score = 207 bits (526), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 107/224 (47%), Positives = 151/224 (67%), Gaps = 5/224 (2%)
Query: 300 LPPTWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKA 359
LP WD ++L++KPKG TSF V +LR+L++V+K+GHAGTLDPMATGLLI +G+A
Sbjct: 19 LPERWDA---AVLLIDKPKGITSFDVIRRLRKLLRVRKIGHAGTLDPMATGLLICLIGRA 75
Query: 360 TKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQ 419
T+ + + K Y GV RLGE T ++DA++ V++R WEH+ D D+ + F GEI Q
Sbjct: 76 TRWMTHFMAQEKEYEGVMRLGEITPSYDAETEVVERRSWEHLTDADLERVRHQFVGEIVQ 135
Query: 420 VPPMFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTY 479
P +SA+KV G+++Y++AR G+++E RR+ I+ F++ D ++ FRV CSKGTY
Sbjct: 136 QVPAYSAVKVKGKRLYEQARAGKAVERPSRRVQIYAFELLG--RDGADVAFRVRCSKGTY 193
Query: 480 IRSLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
IRSL DFG+ALG AHL LRR G Y + AW + L EA+
Sbjct: 194 IRSLVHDFGQALGCGAHLVELRRTRSGPYRVEQAWTLEALAEAL 237
>gi|124003203|ref|ZP_01688053.1| tRNA pseudouridine synthase B [Microscilla marina ATCC 23134]
gi|123991301|gb|EAY30732.1| tRNA pseudouridine synthase B [Microscilla marina ATCC 23134]
Length = 244
Score = 207 bits (526), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 104/216 (48%), Positives = 146/216 (67%), Gaps = 8/216 (3%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVK----KVGHAGTLDPMATGLLIVCVGKATKLVD 364
G ++L++KP WTSF V K+R L++ K KVGHAGTLDP+ATGLLI+C GK TK ++
Sbjct: 14 GEVLLLDKPLEWTSFDVVAKVRNLIRKKEGKVKVGHAGTLDPLATGLLILCTGKKTKTIE 73
Query: 365 RYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMF 424
YQ K Y+G LG T ++DA++ V Q HI + I++ F G+I Q+PPMF
Sbjct: 74 AYQAQQKEYTGEITLGATTPSFDAETEVNQTFDIAHIDESMIQETVQRFVGDIDQIPPMF 133
Query: 425 SAIKVGGEKMYDKARRGESIELSPRRISIFQFD-IERSLEDRQNLIFRVTCSKGTYIRSL 483
SA+KV G+++Y AR+G+ +E+ PR+I+I F+ I+ +L L FRV CSKGTYIRSL
Sbjct: 134 SAVKVDGKRLYKHARKGQVVEIDPRKITIHAFEIIDITLP---TLRFRVVCSKGTYIRSL 190
Query: 484 CADFGKALGSCAHLTALRRDSIGQYSADDAWEFKEL 519
DFGKA+ + A+L+ALRR IG + +DA+ +E
Sbjct: 191 ARDFGKAMNAGAYLSALRRTKIGDFEVNDAYTVEEF 226
>gi|295136263|ref|YP_003586939.1| tRNA pseudouridine synthase B [Zunongwangia profunda SM-A87]
gi|294984278|gb|ADF54743.1| tRNA pseudouridine synthase B [Zunongwangia profunda SM-A87]
Length = 239
Score = 207 bits (526), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 103/221 (46%), Positives = 149/221 (67%), Gaps = 8/221 (3%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLV------KVKKVGHAGTLDPMATGLLIVCVGKATKL 362
G ++L +KP WTSF + K+R ++ K KVGHAGTLDP+ATGLLI+C GK TK
Sbjct: 14 GQILLFDKPLNWTSFQLVNKVRWMIRKSCDIKKIKVGHAGTLDPLATGLLIICTGKFTKR 73
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
+ QG IK Y+G F LG T+++D ++ + + P +HI +E+I + SF G+I Q+PP
Sbjct: 74 IPELQGQIKEYTGTFCLGSTTASYDLETEIDETFPIDHITEENIAETTKSFIGDIEQLPP 133
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRS 482
+FSA+K G+++Y+ AR+GE +E+ PR ISI F+ + S D ++ FRV CSKGTYIRS
Sbjct: 134 VFSALKKDGKRLYEYARKGEEVEIKPRTISIEAFETDAS--DFPDINFRVVCSKGTYIRS 191
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
L DFGK L S AHL++LRR IG +S +++ + E+ +
Sbjct: 192 LAHDFGKKLNSGAHLSSLRRTKIGDFSIENSLGLDDFEKQL 232
>gi|86134977|ref|ZP_01053559.1| tRNA pseudouridine synthase B [Polaribacter sp. MED152]
gi|85821840|gb|EAQ42987.1| tRNA pseudouridine synthase B [Polaribacter sp. MED152]
Length = 231
Score = 207 bits (526), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 102/211 (48%), Positives = 143/211 (67%), Gaps = 8/211 (3%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVK------KVGHAGTLDPMATGLLIVCVGKATKL 362
G ++L++KP WTSF V KLR +K + KVGHAGTLDP+ATGLLI+C GK TK
Sbjct: 9 GQVLLIDKPLTWTSFQVVNKLRWHIKQRFNIKKIKVGHAGTLDPLATGLLIICTGKQTKE 68
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ YQG IK Y+G F +G T ++D ++ V + EHI + +++ F G+I Q PP
Sbjct: 69 INTYQGQIKEYTGTFTIGSTTPSYDLETEVDETFSTEHITSDLLKETTLQFIGDIQQKPP 128
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRS 482
+FSAIK G+++Y+ AR+GE+ E+ R ++I +F+I + N+ FRV CSKGTYIRS
Sbjct: 129 IFSAIKKDGKRLYELARKGETTEIKSRTVTIPEFEITKV--ALPNVEFRVVCSKGTYIRS 186
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDA 513
L DFGKAL S AHL+ LRR IG++S ++A
Sbjct: 187 LAYDFGKALNSGAHLSVLRRTKIGEFSVENA 217
>gi|189501821|ref|YP_001957538.1| hypothetical protein Aasi_0388 [Candidatus Amoebophilus asiaticus
5a2]
gi|189497262|gb|ACE05809.1| hypothetical protein Aasi_0388 [Candidatus Amoebophilus asiaticus
5a2]
Length = 230
Score = 206 bits (525), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 100/211 (47%), Positives = 138/211 (65%), Gaps = 2/211 (0%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQG 368
GTM+L+NKP GWTSF + KLR K+KK+GHAGTLDP+ATGLLI+C K TK + YQ
Sbjct: 11 GTMLLINKPLGWTSFDIVKKLRNTFKIKKIGHAGTLDPLATGLLIICTEKKTKTISYYQE 70
Query: 369 MIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
+ K Y+G LG+ T + D ++P P++HI + I + A +F G I Q+PP +SAIK
Sbjct: 71 LAKVYTGQLVLGKTTPSIDLETPFDSSVPYDHITETAIYELAQTFIGCITQIPPAYSAIK 130
Query: 429 VGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFG 488
G + Y KAR G +L PR ++I F I + D ++ F +TCSKGTYIRS+ DF
Sbjct: 131 TKGVRAYKKAREGSQPDLQPREVTIHNFTI--TAIDLPSVNFEITCSKGTYIRSIVRDFA 188
Query: 489 KALGSCAHLTALRRDSIGQYSADDAWEFKEL 519
+ LG+ A+L+ L R IG YS ++A+E + L
Sbjct: 189 ERLGTGAYLSELCRTHIGPYSLNEAYEIENL 219
>gi|332662917|ref|YP_004445705.1| tRNA pseudouridine synthase B [Haliscomenobacter hydrossis DSM
1100]
gi|332331731|gb|AEE48832.1| tRNA pseudouridine synthase B [Haliscomenobacter hydrossis DSM
1100]
Length = 237
Score = 206 bits (524), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 108/211 (51%), Positives = 140/211 (66%), Gaps = 8/211 (3%)
Query: 309 GTMVLVNKPKGWTSFTVC----GKLRRLVKVK--KVGHAGTLDPMATGLLIVCVGKATKL 362
G ++LV+KP+GWTSF V GK+R L ++K KVGHAGTLDPMATGLLIVC GK TK
Sbjct: 18 GAVLLVDKPQGWTSFDVVNKIRGKIRSLFQLKNIKVGHAGTLDPMATGLLIVCTGKDTKR 77
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ YQ K Y+G G T ++DA++ + P EHI E + A F GEI QVPP
Sbjct: 78 INEYQDRPKEYTGTITFGATTPSYDAETEIDASYPTEHITPELLENARQKFLGEIEQVPP 137
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRS 482
MFSAIKV G+ +Y AR+GESI++ R++ I+ + R + + FRV CSKGTYIRS
Sbjct: 138 MFSAIKVDGQPLYKMARKGESIKVEARKVHIYTMEFTRI--ELPEVDFRVECSKGTYIRS 195
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDA 513
L D GKA+ S A+L+ALRR IG++ D A
Sbjct: 196 LAFDLGKAVKSGAYLSALRRTKIGEFEVDKA 226
>gi|406660549|ref|ZP_11068680.1| tRNA pseudouridine synthase B [Cecembia lonarensis LW9]
gi|405555694|gb|EKB50706.1| tRNA pseudouridine synthase B [Cecembia lonarensis LW9]
Length = 228
Score = 205 bits (522), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 106/218 (48%), Positives = 146/218 (66%), Gaps = 5/218 (2%)
Query: 308 FGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQ 367
+G + LV+KP WTSF V K+R +K+KKVGHAGTLDP+ATGLLIVC GK TK ++ Y
Sbjct: 7 YGEVFLVDKPYEWTSFDVVKKIRNALKIKKVGHAGTLDPLATGLLIVCAGKKTKSIETYM 66
Query: 368 GMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAI 427
G K Y+G F LG+ T ++D + VI H+K EDI+ AA GEI Q+PP SAI
Sbjct: 67 GQEKEYTGTFVLGKTTESYDLEREVIDVADTSHLKLEDIKNAAVQLTGEIMQIPPAHSAI 126
Query: 428 KVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADF 487
KV G+++Y AR+G+ ++L PR +++ +F+I E+ + + FRV CSKGTYIRSL D
Sbjct: 127 KVDGKRVYKAARKGQEVKLDPRPVTVSEFEI-TGFENPE-VHFRVVCSKGTYIRSLARDL 184
Query: 488 GKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAITK 525
G+ L A+L+AL R IG + + A ++L+E ITK
Sbjct: 185 GEILEVGAYLSALCRTRIGAFELEKA---EQLDELITK 219
>gi|303278928|ref|XP_003058757.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226459917|gb|EEH57212.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 242
Score = 204 bits (520), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 103/220 (46%), Positives = 148/220 (67%), Gaps = 9/220 (4%)
Query: 311 MVLVNKPKGWTSFTVCGKLR---RLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQ 367
++LV+KP+G+TSF V ++R R + VKKVGH GTLDPMATG+L++CVG+A + V +
Sbjct: 2 VLLVDKPRGYTSFDVVARVRGIARRMGVKKVGHCGTLDPMATGVLVLCVGQA-RSVSPWS 60
Query: 368 GMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQ-----VPP 422
+ Y G +LGE T + DAD+ PWE I D+++R AAA G++ Q +PP
Sbjct: 61 PYDRAYVGTMKLGERTPSQDADTAPDATFPWEGIADDELRDAAAKLVGDLKQAHDPQLPP 120
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRS 482
M+SAIKV G+++Y+ AR+GE +E R + + F++ER +RQ + F+V C KGTY+R+
Sbjct: 121 MYSAIKVKGKRLYESARKGEVVERKTRDVRVDAFEVERDATNRQLVHFKVECGKGTYVRT 180
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEA 522
L D G++LGS AHLTALRR +G+Y DDAW L +A
Sbjct: 181 LAHDLGESLGSAAHLTALRRVRVGEYDVDDAWTIDMLNDA 220
>gi|385809225|ref|YP_005845621.1| tRNA pseudouridine synthase B [Ignavibacterium album JCM 16511]
gi|383801273|gb|AFH48353.1| tRNA pseudouridine synthase B [Ignavibacterium album JCM 16511]
Length = 241
Score = 204 bits (520), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 96/214 (44%), Positives = 147/214 (68%), Gaps = 4/214 (1%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQG 368
G ++L++KP W+SF V K+R+ + VKKVGHAGTLDP ATGL+I+C G TK + RYQ
Sbjct: 17 GEVILIDKPAFWSSFKVVHKVRKAIGVKKVGHAGTLDPFATGLIILCTGNKTKEITRYQD 76
Query: 369 MIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
+ K Y+GV LG+++ + D ++ + E + +E I + F GEI Q+PPM+SA+K
Sbjct: 77 LKKTYTGVITLGKSSDSMDTETEIKNYPIPEDLTEEKILNTSKIFVGEIEQIPPMYSAVK 136
Query: 429 VGGEKMYDKARRGESIELSPRRISIFQFDIER-SLEDRQNLIFRVTCSKGTYIRSLCADF 487
G+ +Y AR+G+++E PR++++++FDIE+ SL + + F + CSKGTYIR + DF
Sbjct: 137 KAGKSLYAYARKGKTVEREPRKVTVYKFDIEKISLPE---IHFTIECSKGTYIRVIADDF 193
Query: 488 GKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
GK LG+ A LT+LRR +IG++ +DA++ E E
Sbjct: 194 GKVLGTRAMLTSLRRTAIGEHKVEDAFQVNEFIE 227
>gi|116669985|ref|YP_830918.1| tRNA pseudouridine synthase B [Arthrobacter sp. FB24]
gi|189030155|sp|A0JUU8.1|TRUB_ARTS2 RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|116610094|gb|ABK02818.1| tRNA pseudouridine synthase B [Arthrobacter sp. FB24]
Length = 306
Score = 204 bits (518), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 98/215 (45%), Positives = 136/215 (63%), Gaps = 4/215 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP+GWTS V G++RRL +KVGHAGTLDPMATG+L++ + KAT+L+ G
Sbjct: 5 LVIVDKPQGWTSHDVVGRMRRLAGTRKVGHAGTLDPMATGVLVLGINKATRLLTYIVGTS 64
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y+ RLGE+T T DA+ V+ + + IR A A+ GEI QVP SAIKV
Sbjct: 65 KTYTATIRLGESTVTDDAEGEVVSSHSAAAVTEGAIRAAVAALTGEIQQVPSSVSAIKVN 124
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIF----RVTCSKGTYIRSLCAD 486
GE+ Y + R GE ++L+ R ++I +FD+ +R + V CS GTYIR+L D
Sbjct: 125 GERAYARVRSGEDVKLAARPVTIHRFDVHAVRPERAGAVLDVDVTVECSSGTYIRALARD 184
Query: 487 FGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
G+ALG+ HLTALRR +G Y+ D A ++L E
Sbjct: 185 LGEALGTGGHLTALRRTQVGPYTLDQARTLEQLAE 219
>gi|392390817|ref|YP_006427420.1| tRNA pseudouridine synthase B [Ornithobacterium rhinotracheale DSM
15997]
gi|390521895|gb|AFL97626.1| tRNA pseudouridine synthase B [Ornithobacterium rhinotracheale DSM
15997]
Length = 231
Score = 204 bits (518), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 104/211 (49%), Positives = 137/211 (64%), Gaps = 8/211 (3%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVK------KVGHAGTLDPMATGLLIVCVGKATKL 362
G + L++KP WTSF V K+R ++ KVGHAGTLDP ATGLLIVCVGK TK
Sbjct: 11 GKVFLIDKPLDWTSFDVVKKIRYNIRKNYNLKKFKVGHAGTLDPKATGLLIVCVGKFTKK 70
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
+D YQ K Y+G +LG T ++D + P EH+ DE I A F GEI Q+PP
Sbjct: 71 IDTYQAQEKTYTGTIKLGATTESYDTEKPENAFFETEHLTDEMIHNATQKFIGEIEQLPP 130
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRS 482
M SA+K+ G ++Y+ AR+GES E+ PR+I+I F I + + + F +TCSKGTYIRS
Sbjct: 131 MHSAVKLNGTRLYEMARKGESAEIKPRKITIKDFKITKI--EMPFVDFEITCSKGTYIRS 188
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDA 513
+ DFGKAL S +LTALRR IG++S ++A
Sbjct: 189 IAHDFGKALNSGGYLTALRRTRIGEFSVENA 219
>gi|374376085|ref|ZP_09633743.1| tRNA pseudouridine synthase B [Niabella soli DSM 19437]
gi|373232925|gb|EHP52720.1| tRNA pseudouridine synthase B [Niabella soli DSM 19437]
Length = 266
Score = 204 bits (518), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 100/215 (46%), Positives = 140/215 (65%), Gaps = 2/215 (0%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQG 368
G ++L++KP WTSF V K+R L++VKKVGHAGTLDP+ATGLL+VC GK TK ++ Y
Sbjct: 47 GAVLLIDKPLEWTSFDVVRKVRNLIRVKKVGHAGTLDPLATGLLVVCTGKFTKQINTYMA 106
Query: 369 MIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
K Y+G F +G T T+D +S +P+EHI +I A F G I Q+PP SAIK
Sbjct: 107 REKEYTGTFTIGAVTPTYDLESSPENFKPYEHITLFEIEAATHQFTGTIQQIPPAHSAIK 166
Query: 429 VGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFG 488
G+++Y+ AR+G ++L PR + I F+I+ + + F+V CS GTYIRSL DFG
Sbjct: 167 KDGKRVYELARKGIEVQLDPRTVVISSFEIDAT--RLPEIAFKVVCSTGTYIRSLAHDFG 224
Query: 489 KALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
+ALG A+L++LRR IG +S ++A EA+
Sbjct: 225 QALGCGAYLSSLRRTRIGSFSVNEAITMDAFTEAM 259
>gi|431798604|ref|YP_007225508.1| tRNA pseudouridine 55 synthase [Echinicola vietnamensis DSM 17526]
gi|430789369|gb|AGA79498.1| tRNA pseudouridine 55 synthase [Echinicola vietnamensis DSM 17526]
Length = 224
Score = 203 bits (516), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 103/217 (47%), Positives = 141/217 (64%), Gaps = 2/217 (0%)
Query: 307 PFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRY 366
P+G + LVNKP WTSF V K+R +K+KKVGHAGTLDP+ATGLLI+C GK TK ++ Y
Sbjct: 4 PYGEVFLVNKPYRWTSFDVVKKIRNTLKIKKVGHAGTLDPLATGLLIICAGKKTKSINDY 63
Query: 367 QGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSA 426
G K Y+G F LG+ T+++D + V H+ E I++A S G+I QVPP SA
Sbjct: 64 MGQEKEYTGTFVLGKTTASFDLEQEVEVVADPSHLTLEAIQEACKSLTGDIMQVPPTHSA 123
Query: 427 IKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCAD 486
IK G+++Y+ AR+G ++L PR +++F F+I R + + FR+ CSKGTYIRSL D
Sbjct: 124 IKKDGKRVYESARKGIDVKLDPRPVTVFVFEITRC--ELPEIDFRIVCSKGTYIRSLARD 181
Query: 487 FGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
G+AL A+++AL R IG DA E E+ E I
Sbjct: 182 LGEALQVGAYMSALTRTRIGDSHLSDASEIDEIVEKI 218
>gi|336308023|gb|AEI51125.1| tRNA pseudouridine synthase B [Runella slithyformis DSM 19594]
Length = 231
Score = 203 bits (516), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 101/210 (48%), Positives = 139/210 (66%), Gaps = 2/210 (0%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQG 368
G ++L+NKP WTSF K+++ + KK+GHAGTLDP+ATGLLI+C GK TK +D YQG
Sbjct: 12 GEVILLNKPLTWTSFDAVNKIKKACRFKKIGHAGTLDPLATGLLILCTGKKTKEIDTYQG 71
Query: 369 MIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
K Y+G LG+ T + D ++P P +HI E ++ A A GE+ Q PP++SA+K
Sbjct: 72 AEKEYTGKMVLGKTTPSIDLETPFDGEYPIDHITPELMQAAVAKLTGELSQYPPIYSAVK 131
Query: 429 VGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFG 488
+GGE++Y KARRGE++E+ PR +S+ F+I+ + FRV CSKGTYIRSL DFG
Sbjct: 132 MGGERLYKKARRGEAVEIKPRSVSVPVFEIDAV--HFPEISFRVVCSKGTYIRSLVRDFG 189
Query: 489 KALGSCAHLTALRRDSIGQYSADDAWEFKE 518
L S A+++ L R IG Y DA E +E
Sbjct: 190 MLLESGAYMSELCRTRIGAYWLKDADEIEE 219
>gi|325102998|ref|YP_004272652.1| tRNA pseudouridine synthase B [Pedobacter saltans DSM 12145]
gi|324971846|gb|ADY50830.1| tRNA pseudouridine synthase B [Pedobacter saltans DSM 12145]
Length = 243
Score = 203 bits (516), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 106/224 (47%), Positives = 143/224 (63%), Gaps = 4/224 (1%)
Query: 302 PTWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVK--VKKVGHAGTLDPMATGLLIVCVGKA 359
PT++ G ++L+NKP WTSF + GKLR +K KVGHAGTLDP+ATGLLI+C GK
Sbjct: 12 PTFNFTQGEVLLINKPYKWTSFDIVGKLRNSLKPLKLKVGHAGTLDPLATGLLIICTGKL 71
Query: 360 TKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQ 419
TK +D +Q K Y+G LG T ++D ++ Q I + I++ F G+I Q
Sbjct: 72 TKQIDSFQAEEKEYTGTITLGSTTPSYDLETEPDQFFDISGISENQIKENTKHFIGDIEQ 131
Query: 420 VPPMFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTY 479
PP+ SA+K GE++Y KARRGE +++S R++SI +F+I R + + FRV CSKGTY
Sbjct: 132 FPPIHSALKKDGERLYLKARRGEEVKVSARKVSITEFEITRI--ELPEVDFRVVCSKGTY 189
Query: 480 IRSLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
IRSL DFGK LG AHL+ LRR G + D+A+E EL I
Sbjct: 190 IRSLAHDFGKQLGIGAHLSKLRRTKSGNFRIDNAFEIMELVNHI 233
>gi|120437363|ref|YP_863049.1| tRNA pseudouridine synthase B [Gramella forsetii KT0803]
gi|117579513|emb|CAL67982.1| tRNA pseudouridine synthase B [Gramella forsetii KT0803]
Length = 254
Score = 202 bits (515), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 101/221 (45%), Positives = 146/221 (66%), Gaps = 8/221 (3%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLV------KVKKVGHAGTLDPMATGLLIVCVGKATKL 362
G ++L +KP WTSF V K+R L+ K KVGHAGTLDP+ATGLLI+C GK TK
Sbjct: 30 GQVLLFDKPLNWTSFQVVNKVRWLIRKSCNIKKIKVGHAGTLDPLATGLLIICTGKFTKT 89
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
+ + QG+IK Y+G F LG T ++D ++ + Q+ P HI +E + + F GEI Q PP
Sbjct: 90 IPQLQGLIKEYTGTFTLGATTPSFDLETEIDQKFPTNHITEELLNATSKKFIGEIEQTPP 149
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRS 482
+FSA+K G+++Y+ AR G+ +E+ R + I +F+I+ ++ + FRV CSKGTYIRS
Sbjct: 150 VFSALKKDGKRLYEYAREGKEVEVKSRMVEISEFEIDS--KNFPKIDFRVVCSKGTYIRS 207
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
L +FG+AL S AHL+ LRR +IG YS + A + + E+ +
Sbjct: 208 LAHEFGQALHSGAHLSELRRTAIGDYSVEKAMDIESFEKLL 248
>gi|383819288|ref|ZP_09974564.1| tRNA pseudouridine synthase B [Mycobacterium phlei RIVM601174]
gi|383337259|gb|EID15640.1| tRNA pseudouridine synthase B [Mycobacterium phlei RIVM601174]
Length = 293
Score = 202 bits (515), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 102/220 (46%), Positives = 140/220 (63%), Gaps = 4/220 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G TS V G+ RR +KVGHAGTLDPMATG+L+V V +ATK++
Sbjct: 6 LVVVDKPAGMTSHDVVGRCRRFFGTRKVGHAGTLDPMATGVLVVGVERATKILGLLTATD 65
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y+ RLG+ TST DA+ ++Q P + + D+ I A A+ RGEI Q+P SAIKV
Sbjct: 66 KSYTATIRLGQTTSTEDAEGEILQTTPADGVTDDQIEAAVAALRGEIDQIPSAVSAIKVD 125
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLI---FRVTCSKGTYIRSLCADF 487
G++ Y AR G+++EL PRRI + +FD+ R++ LI V CS GTY+R+L D
Sbjct: 126 GQRAYKLAREGQTVELKPRRIRVDRFDV-RAIRRCDGLIDVDVEVDCSSGTYVRALARDV 184
Query: 488 GKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAITKNY 527
G ALG HLTALRR +G++ D+A +EL EA +Y
Sbjct: 185 GAALGVGGHLTALRRTRVGRFGLDEACTLEELAEAPRLSY 224
>gi|363582349|ref|ZP_09315159.1| tRNA pseudouridine synthase B [Flavobacteriaceae bacterium HQM9]
Length = 229
Score = 202 bits (514), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 100/219 (45%), Positives = 143/219 (65%), Gaps = 8/219 (3%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVK------KVGHAGTLDPMATGLLIVCVGKATKL 362
G +L++KP W+SF V KLR L++ + KVGHAGTLDP+ATGLL++C GK+TK
Sbjct: 9 GQTLLIDKPLEWSSFQVVNKLRWLIRKQYDIKKIKVGHAGTLDPLATGLLLICTGKSTKT 68
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ QG IK Y+G LG T ++D ++ + + P +H+ +E I A F G+I Q PP
Sbjct: 69 INELQGQIKEYTGTIVLGATTPSYDLETEINAQFPTDHLTEEGIHAATKQFVGKIEQYPP 128
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRS 482
+FSA+K G+++Y+ AR E +E++PR I I F+I + + N+ FRV CSKGTYIRS
Sbjct: 129 VFSALKKEGKRLYEYARNNEEVEITPREIEINSFEI--TAINGVNVDFRVICSKGTYIRS 186
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
L DFGKAL + HL+ALRR IG ++ +A + EE
Sbjct: 187 LAHDFGKALHAGGHLSALRRTKIGDFNVANAITLEVFEE 225
>gi|399028536|ref|ZP_10729761.1| tRNA pseudouridine 55 synthase [Flavobacterium sp. CF136]
gi|398073874|gb|EJL65034.1| tRNA pseudouridine 55 synthase [Flavobacterium sp. CF136]
Length = 233
Score = 202 bits (513), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 102/222 (45%), Positives = 139/222 (62%), Gaps = 9/222 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVK-------KVGHAGTLDPMATGLLIVCVGKATK 361
G ++L++KP W+SF KL+ L+ K K+GHAGTLDP+ATGLL++C GK TK
Sbjct: 9 GQVLLIDKPLKWSSFQAVNKLKYLLINKVGLPKKFKIGHAGTLDPLATGLLLICTGKFTK 68
Query: 362 LVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVP 421
+ QG K Y+G F +G T ++D ++ + Q P EHI + I + F GEI Q P
Sbjct: 69 RISELQGQAKEYTGTFYIGATTPSYDLETEIDQTFPTEHIDETLIHETVKQFLGEIDQKP 128
Query: 422 PMFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIR 481
P+FSAIK G ++Y+ AR GE+IE+ R+ +I +F+I R + FRV CSKGTYIR
Sbjct: 129 PIFSAIKKDGVRLYEHARAGETIEIESRKTTIHEFEITRV--ALPEIDFRVICSKGTYIR 186
Query: 482 SLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
SL DFGKA+ S +HLT LRR IG Y DA + EE++
Sbjct: 187 SLAFDFGKAMNSGSHLTVLRRTKIGDYDVKDAIDITLFEESL 228
>gi|424843124|ref|ZP_18267749.1| tRNA pseudouridine 55 synthase [Saprospira grandis DSM 2844]
gi|395321322|gb|EJF54243.1| tRNA pseudouridine 55 synthase [Saprospira grandis DSM 2844]
Length = 247
Score = 201 bits (510), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 106/226 (46%), Positives = 141/226 (62%), Gaps = 8/226 (3%)
Query: 304 WDGPFGTMVLVNKPKGWTSFTVCGKLR----RLVKVKK--VGHAGTLDPMATGLLIVCVG 357
+D G ++LV+KP WTSF V K+R R + VKK VGHAGTLDP+ATGLL++C G
Sbjct: 17 YDFQAGALLLVDKPLEWTSFDVVNKIRYALCRSLGVKKIKVGHAGTLDPLATGLLLICTG 76
Query: 358 KATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEI 417
K TK +D QGM K Y+G +LG T ++DA+S +++ I + +A F G I
Sbjct: 77 KYTKKIDGLQGMPKSYTGQLKLGATTPSYDAESEETEQQSIAGIDAAALEQARQQFLGPI 136
Query: 418 WQVPPMFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKG 477
Q PPMFSA+K+ G+ +Y AR+G+ +E R + IF F + + D + F V CSKG
Sbjct: 137 AQYPPMFSAVKIKGQALYKLARKGKEVERKARNVEIFDFQLTHT--DLPLVDFEVACSKG 194
Query: 478 TYIRSLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
TYIRSL DFG+AL + A+LTALRR IG YS + AW L E I
Sbjct: 195 TYIRSLAYDFGRALDNAAYLTALRRTKIGDYSIESAWSLPALIEHI 240
>gi|443243248|ref|YP_007376473.1| pseudouridine synthase [Nonlabens dokdonensis DSW-6]
gi|442800647|gb|AGC76452.1| pseudouridine synthase [Nonlabens dokdonensis DSW-6]
Length = 238
Score = 201 bits (510), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 101/221 (45%), Positives = 143/221 (64%), Gaps = 8/221 (3%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLV----KVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G ++L++KP W+SF V KLR L+ K+KK VGHAGTLDP+A+GLLI+C GK TK
Sbjct: 13 GQVLLIDKPLEWSSFQVVNKLRWLIRKEYKIKKIKVGHAGTLDPLASGLLIICTGKETKN 72
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
+ YQ K Y+G LG T ++D ++ V + P + + ++ IRK F GEI Q PP
Sbjct: 73 ITTYQAQEKEYTGTITLGATTPSYDLETEVDRTFPLDDLTEDLIRKTTTQFTGEIQQKPP 132
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRS 482
+FSAIK G+++Y+ AR GE+ E+ R ++I F+I R + + F+++CSKGTYIRS
Sbjct: 133 IFSAIKKDGKRLYELARAGETTEIKSRTVTIHDFEITRI--ELPEVDFKISCSKGTYIRS 190
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
+ DFG AL + HLTALRR +IG Y ++A K EE +
Sbjct: 191 IAHDFGAALNNGGHLTALRRTAIGNYRVENAMSIKSFEELV 231
>gi|146298333|ref|YP_001192924.1| tRNA pseudouridine synthase B [Flavobacterium johnsoniae UW101]
gi|13959602|sp|Q9RB36.1|TRUB_FLAJ1 RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|5739402|gb|AAD50463.1|AF169967_6 TruB [Flavobacterium johnsoniae UW101]
gi|146152751|gb|ABQ03605.1| tRNA pseudouridine synthase B [Flavobacterium johnsoniae UW101]
Length = 229
Score = 201 bits (510), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 102/222 (45%), Positives = 139/222 (62%), Gaps = 9/222 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVK-------KVGHAGTLDPMATGLLIVCVGKATK 361
G ++L++KP W+SF KL+ L+ K K+GHAGTLDP+ATGLL++C GK TK
Sbjct: 9 GQVLLIDKPLKWSSFQAVNKLKYLLINKVGLPKKFKIGHAGTLDPLATGLLLICTGKFTK 68
Query: 362 LVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVP 421
+ QG K Y+G F +G T ++D ++ + Q P EHI + I + F GEI Q P
Sbjct: 69 KISELQGQAKEYTGTFYIGATTPSYDLETEIDQTFPTEHINEVLIHETVKQFLGEIDQKP 128
Query: 422 PMFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIR 481
P+FSAIK G ++Y+ AR GESIE+ R+ +I +F+I R + FRV CSKGTYIR
Sbjct: 129 PIFSAIKKDGVRLYEHARAGESIEIESRKTTIHEFEITRI--ALPEIDFRVVCSKGTYIR 186
Query: 482 SLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
SL DFGKA+ S +HLT LRR IG Y +A + EE++
Sbjct: 187 SLAYDFGKAMNSGSHLTVLRRTKIGDYDVKNAIDITLFEESL 228
>gi|383451898|ref|YP_005358619.1| tRNA pseudouridine synthase B [Flavobacterium indicum GPTSA100-9]
gi|380503520|emb|CCG54562.1| tRNA pseudouridine synthase B [Flavobacterium indicum GPTSA100-9]
Length = 230
Score = 201 bits (510), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 101/212 (47%), Positives = 136/212 (64%), Gaps = 9/212 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVK-------KVGHAGTLDPMATGLLIVCVGKATK 361
G ++L++KP W+SF KL+ ++K K K+GHAGTLDP+ATGLLIVC GK TK
Sbjct: 9 GKVLLIDKPLTWSSFQAVNKLKFVLKRKYNLPKKFKIGHAGTLDPLATGLLIVCTGKFTK 68
Query: 362 LVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVP 421
+ GM+K Y+G +G T ++D ++ + P HI D I++ F GEI Q P
Sbjct: 69 RIPELMGMVKEYTGTITVGATTPSYDLETEINATFPTSHITDTLIQETTQQFLGEIEQFP 128
Query: 422 PMFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIR 481
P+FSAIK G+++Y+ AR GE +E+S R+I+I +F+I R + + FRV CSKGTYIR
Sbjct: 129 PVFSAIKKDGKRLYEHARAGEDVEISARKIAIHEFEITRI--ELPEIDFRVVCSKGTYIR 186
Query: 482 SLCADFGKALGSCAHLTALRRDSIGQYSADDA 513
SL DFGKAL S HLTALRR IG Y +
Sbjct: 187 SLAFDFGKALQSGGHLTALRRTKIGTYDVANG 218
>gi|440747025|ref|ZP_20926286.1| tRNA pseudouridine synthase B [Mariniradius saccharolyticus AK6]
gi|436484654|gb|ELP40630.1| tRNA pseudouridine synthase B [Mariniradius saccharolyticus AK6]
Length = 227
Score = 200 bits (509), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 100/218 (45%), Positives = 140/218 (64%), Gaps = 6/218 (2%)
Query: 308 FGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQ 367
+G + L+NKP WTSF V K+R +K+KKVGHAGTLDP+ATGLLIVC GK TK ++ +
Sbjct: 6 YGEVFLINKPLEWTSFDVVKKIRNTLKIKKVGHAGTLDPLATGLLIVCAGKKTKSIETFM 65
Query: 368 GMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAI 427
G K Y+G F LG+ T ++D + V+ H+ ED++KAAA G+I QVPPM SAI
Sbjct: 66 GQEKEYTGTFVLGKTTESFDLEKEVVDVADPAHLTMEDVKKAAAQLTGDILQVPPMHSAI 125
Query: 428 KVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLI--FRVTCSKGTYIRSLCA 485
KV G+++Y+ AR+G+ + + R +S+ F+I D QN + FR+ CSKGTYIRSL
Sbjct: 126 KVDGKRVYESARKGQEVVMEARPVSVPVFEI----TDFQNPVVHFRIVCSKGTYIRSLAR 181
Query: 486 DFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
D G LG A++ +L R G + ++A + E I
Sbjct: 182 DLGNILGVGAYMASLIRTRTGDFRLEEAISVNDAVELI 219
>gi|86143827|ref|ZP_01062203.1| putative tRNA pseudouridine synthase [Leeuwenhoekiella blandensis
MED217]
gi|85829870|gb|EAQ48332.1| putative tRNA pseudouridine synthase [Leeuwenhoekiella blandensis
MED217]
Length = 237
Score = 200 bits (509), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 103/221 (46%), Positives = 140/221 (63%), Gaps = 8/221 (3%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLV----KVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G ++L +KP WTSF + K+R L+ K+KK VGHAGTLDP+ATGLLI+C GK TK
Sbjct: 11 GQVLLFDKPLNWTSFQLVNKVRWLIRKTYKIKKIKVGHAGTLDPLATGLLIICTGKFTKR 70
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ + G K Y+G LG T ++D ++ + Q P H+ DE I+K A F G I Q PP
Sbjct: 71 IEEFMGQEKEYTGTIVLGATTPSYDLETEIDQTFPTAHLNDELIKKTTAQFTGSIQQQPP 130
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRS 482
+FSA+K G+++Y+ AR GE +E+ R + + F+I R + + FRV CSKGTYIRS
Sbjct: 131 VFSALKKDGKRLYEFARAGEKVEIPSRTVEVSAFEITRI--ELPEVDFRVRCSKGTYIRS 188
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
L DFGKAL S HL+ALRR IG + DA + E A+
Sbjct: 189 LAHDFGKALNSGGHLSALRRTKIGDFDVIDATSLEAFEAAL 229
>gi|390954163|ref|YP_006417921.1| tRNA pseudouridine synthase B [Aequorivita sublithincola DSM 14238]
gi|390420149|gb|AFL80906.1| tRNA pseudouridine synthase B [Aequorivita sublithincola DSM 14238]
Length = 234
Score = 200 bits (509), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 103/221 (46%), Positives = 143/221 (64%), Gaps = 8/221 (3%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLV------KVKKVGHAGTLDPMATGLLIVCVGKATKL 362
G ++L++KP WTSF KLR L+ K KVGHAGTLDP+ATGLLI+C GK TK
Sbjct: 14 GQVLLIDKPLEWTSFQAVNKLRWLIRKSFDIKKIKVGHAGTLDPLATGLLIICTGKFTKR 73
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
+D +Q K Y+G F LG T ++D ++ + Q I E I +A F GEI Q PP
Sbjct: 74 IDTFQAQEKEYTGSFTLGATTPSYDLETQIDQTFDVSEITSEKIHEATKQFLGEIQQQPP 133
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRS 482
+FSA+K G+++Y+ AR GE +E+ R ++I +F+I + + N+ FRV CSKGTYIRS
Sbjct: 134 VFSALKKEGKRLYEYARSGEEVEIPFRTVTISEFEITKI--ELPNIDFRVVCSKGTYIRS 191
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
L DFGKAL + AHL+ALRR IG++S ++A + E ++
Sbjct: 192 LANDFGKALDNGAHLSALRRTRIGEFSVENAVGIEAFEASL 232
>gi|305666141|ref|YP_003862428.1| putative tRNA pseudouridine synthase [Maribacter sp. HTCC2170]
gi|88707638|gb|EAQ99879.1| putative tRNA pseudouridine synthase [Maribacter sp. HTCC2170]
Length = 232
Score = 200 bits (508), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 100/213 (46%), Positives = 140/213 (65%), Gaps = 8/213 (3%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVK------KVGHAGTLDPMATGLLIVCVGKATKL 362
G ++L++KP GW+SF KL+ +++ K KVGHAGTLDP+ATGLL++C GK TK
Sbjct: 12 GQLLLIDKPLGWSSFQAVNKLKWVIRRKFQLKKIKVGHAGTLDPLATGLLLICTGKFTKK 71
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ QG IK Y+G LG T ++D ++ V + P EHI DE IR A F G I QVPP
Sbjct: 72 INDLQGQIKEYTGTITLGATTPSFDLETEVNENFPIEHITDEMIRDTTAQFMGNIEQVPP 131
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRS 482
+FSA+K G+++Y+ AR G+ +E+ R ++I +F+I + + + FRV CSKGTYIRS
Sbjct: 132 IFSALKKDGKRLYEYAREGKEVEIKKRLVTISEFEITKI--NIPEVEFRVVCSKGTYIRS 189
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDAWE 515
L DFG L S AHL+ LRR IG Y+ + A +
Sbjct: 190 LAHDFGLHLRSGAHLSRLRRTKIGDYNVNKALD 222
>gi|373952867|ref|ZP_09612827.1| tRNA pseudouridine synthase B [Mucilaginibacter paludis DSM 18603]
gi|373889467|gb|EHQ25364.1| tRNA pseudouridine synthase B [Mucilaginibacter paludis DSM 18603]
Length = 241
Score = 200 bits (508), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 105/217 (48%), Positives = 140/217 (64%), Gaps = 4/217 (1%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVKK--VGHAGTLDPMATGLLIVCVGKATKLVDRY 366
G ++LVNKP WTSF V GK+R +K K VGHAGTLDP+ATGLLI+C GK TK +D +
Sbjct: 16 GELLLVNKPYNWTSFDVVGKIRNTLKPLKLKVGHAGTLDPLATGLLIICTGKLTKQIDTF 75
Query: 367 QGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSA 426
Q K Y+G LG T ++D ++ V + + + IR A F G+I Q PP SA
Sbjct: 76 QAEEKEYTGTMILGATTPSYDMETDVDETFDPGSLTEAQIRANCAQFTGDIQQYPPAHSA 135
Query: 427 IKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCAD 486
+K+ GE++Y+KARRGE +EL R ++I +F+I R + + FRV CSKGTYIRSL D
Sbjct: 136 VKINGERLYEKARRGEDVELRLRFVTISEFEITRI--ELPEVDFRVVCSKGTYIRSLVND 193
Query: 487 FGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
FGKAL + A+L+ L R G + +DA+E EL E I
Sbjct: 194 FGKALNNGAYLSNLCRTRSGSFRIEDAFEVVELVEHI 230
>gi|88801889|ref|ZP_01117417.1| putative tRNA pseudouridine synthase [Polaribacter irgensii 23-P]
gi|88782547|gb|EAR13724.1| putative tRNA pseudouridine synthase [Polaribacter irgensii 23-P]
Length = 236
Score = 199 bits (507), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 100/224 (44%), Positives = 144/224 (64%), Gaps = 8/224 (3%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR------RLVKVKKVGHAGTLDPMATGLLIVCVGKATKL 362
G ++L++KP W+SF V KLR +K KVGHAGTLDP+ATGLLI+C GK TK
Sbjct: 9 GQVLLIDKPLTWSSFQVVNKLRWEIRQHFNIKKIKVGHAGTLDPLATGLLIICTGKQTKQ 68
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ YQG +K Y+G F LG T ++D ++ + P HI ++ I F GEI Q PP
Sbjct: 69 IESYQGQVKEYTGTFTLGATTPSYDLETEIDNTFPTAHITEKLIWDTTQQFLGEIQQKPP 128
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRS 482
+FSAIK G+++Y+ AR+GE+ E+ R +++ +F+I D + FR+ CSKGTYIRS
Sbjct: 129 IFSAIKKDGKRLYELARKGETTEIKERTVTVSKFEITNI--DLPEVAFRIICSKGTYIRS 186
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAITKN 526
+ DFGKA+ S A+L++LRR IG +S +DA + E + +N
Sbjct: 187 MAFDFGKAVHSGAYLSSLRRTKIGNFSVNDALSVEGFIEKLKEN 230
>gi|390444057|ref|ZP_10231840.1| tRNA pseudouridine synthase B [Nitritalea halalkaliphila LW7]
gi|389665288|gb|EIM76759.1| tRNA pseudouridine synthase B [Nitritalea halalkaliphila LW7]
Length = 233
Score = 199 bits (506), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 102/215 (47%), Positives = 134/215 (62%), Gaps = 4/215 (1%)
Query: 306 GPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDR 365
P+G + VNKP WTSF V K+R ++VKKVGHAGTLDP+ATGLLI+C GK TK ++
Sbjct: 9 APYGEVFFVNKPYTWTSFDVVKKIRHALQVKKVGHAGTLDPLATGLLIICAGKMTKQIES 68
Query: 366 YQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFS 425
Y K Y F LG T ++D + VI I + + A FRG I QVPP S
Sbjct: 69 YMAQEKAYEATFVLGATTESFDLEKEVIPVADPSGIDATQVEEVLARFRGAIEQVPPQHS 128
Query: 426 AIKVGGEKMYDKARRGESIELSPRRISIFQFD-IERSLEDRQNLIFRVTCSKGTYIRSLC 484
AIKV G+++Y AR+GE +EL PR + IF+ + + SL + + R+ CSKGTYIRSL
Sbjct: 129 AIKVDGKRVYASARKGEEVELQPRPVQIFELELLAFSLPEIK---LRIRCSKGTYIRSLA 185
Query: 485 ADFGKALGSCAHLTALRRDSIGQYSADDAWEFKEL 519
D G+ALG A+++AL R +IG Y+ DA E L
Sbjct: 186 RDIGEALGVGAYMSALVRTAIGAYTLADAEELPAL 220
>gi|375145326|ref|YP_005007767.1| tRNA pseudouridine synthase B [Niastella koreensis GR20-10]
gi|361059372|gb|AEV98363.1| tRNA pseudouridine synthase B [Niastella koreensis GR20-10]
Length = 228
Score = 199 bits (506), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 102/210 (48%), Positives = 138/210 (65%), Gaps = 2/210 (0%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQG 368
G ++L+NKP WTSF V K+R +K+KKVGHAGTLDP+ATG+LI+C GK TK ++ Y
Sbjct: 11 GQVLLINKPLEWTSFDVVRKIRNAIKIKKVGHAGTLDPLATGMLILCTGKFTKRINEYMA 70
Query: 369 MIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
K Y+G LG T T+D +S + + I E ++ AA F GEI QVPPM SAIK
Sbjct: 71 QEKEYTGTITLGAITPTYDLESEPRDFKDYSSITPEQLQTIAAQFTGEIMQVPPMHSAIK 130
Query: 429 VGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFG 488
G+++Y+ AR G++IEL PRRI+I +F+ + + L FRV CS GTYIRSL D G
Sbjct: 131 KDGKRVYELARAGKTIELEPRRITIKEFEFTKI--ELPVLYFRVVCSTGTYIRSLANDVG 188
Query: 489 KALGSCAHLTALRRDSIGQYSADDAWEFKE 518
KA G A+L++L R IG++S D + +E
Sbjct: 189 KAAGCGAYLSSLCRTRIGEFSLDKSMTMEE 218
>gi|379728887|ref|YP_005321083.1| tRNA pseudouridine synthase B [Saprospira grandis str. Lewin]
gi|378574498|gb|AFC23499.1| tRNA pseudouridine synthase B [Saprospira grandis str. Lewin]
Length = 241
Score = 199 bits (506), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 109/229 (47%), Positives = 141/229 (61%), Gaps = 14/229 (6%)
Query: 304 WDGPFGTMVLVNKPKGWTSFTVCGKLR----RLVKVKK--VGHAGTLDPMATGLLIVCVG 357
+D G ++LV+KP WTSF V K+R R + VKK VGHAGTLDP+ATGLL++C G
Sbjct: 10 YDFQAGALLLVDKPLEWTSFDVVNKIRYALCRSLGVKKIKVGHAGTLDPLATGLLLICTG 69
Query: 358 KATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEI 417
K TK +D QGM K Y+G +LG T ++DA+S +++ I + +A F G I
Sbjct: 70 KYTKKIDGLQGMPKTYTGQLKLGATTPSYDAESEETEQQSIAGIDAAALEQARQQFLGPI 129
Query: 418 WQVPPMFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDI---ERSLEDRQNLIFRVTC 474
Q PPMFSA+K+ G+ +Y AR+G+ +E R I IF F + E L D F V C
Sbjct: 130 AQYPPMFSAVKIKGQALYKLARKGKEVERKARNIEIFDFQLTNTELPLVD-----FEVAC 184
Query: 475 SKGTYIRSLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
SKGTYIRSL DFG+AL + A+LTALRR IG YS + AW L E I
Sbjct: 185 SKGTYIRSLAYDFGRALDNAAYLTALRRTKIGDYSIESAWSLPALIEHI 233
>gi|344202340|ref|YP_004787483.1| tRNA pseudouridine synthase B [Muricauda ruestringensis DSM 13258]
gi|343954262|gb|AEM70061.1| tRNA pseudouridine synthase B [Muricauda ruestringensis DSM 13258]
Length = 234
Score = 199 bits (506), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 99/211 (46%), Positives = 138/211 (65%), Gaps = 8/211 (3%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVK------KVGHAGTLDPMATGLLIVCVGKATKL 362
G ++L++KP WTSF L+ ++ K K+GHAGTLDP+ATGLLI+C GK TK
Sbjct: 10 GQILLIDKPLEWTSFQAVNALKWAIRKKFGLKKIKIGHAGTLDPLATGLLIICTGKFTKK 69
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
+ QG +K Y+G F LG T ++D ++ V Q P HI D I++A F GEI QVPP
Sbjct: 70 IPELQGQVKEYTGTFTLGATTPSYDLETEVNQTFPTGHITDASIKEATKKFLGEIEQVPP 129
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRS 482
+FSA+K G+++Y+ AR G+ +E+ R+I I +F I R + F+V CSKGTYIRS
Sbjct: 130 IFSALKKDGKRLYELAREGKKVEIKSRKIEILEFKITRITLPEVD--FKVVCSKGTYIRS 187
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDA 513
L DFG+ALGS A+L+ LRR IG ++ ++A
Sbjct: 188 LAHDFGEALGSGAYLSELRRTKIGDFNVNNA 218
>gi|296269048|ref|YP_003651680.1| tRNA pseudouridine synthase B [Thermobispora bispora DSM 43833]
gi|296091835|gb|ADG87787.1| tRNA pseudouridine synthase B [Thermobispora bispora DSM 43833]
Length = 299
Score = 199 bits (505), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 105/228 (46%), Positives = 139/228 (60%), Gaps = 7/228 (3%)
Query: 296 RSTELPPTWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVC 355
R+ PP P G +V+V+KP GWTS V K+RRL ++VGHAGTLDPMATG+L+V
Sbjct: 5 RARRTPP----PSG-LVIVDKPAGWTSHDVVAKIRRLAGTRRVGHAGTLDPMATGVLVVG 59
Query: 356 VGKATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRG 415
V KAT+L+ K Y RLG AT T DA+ V P HI DE + +A AS G
Sbjct: 60 VEKATRLLGHLALAEKTYEATIRLGVATDTDDAEGQVTATAPAGHITDERLHQAVASLTG 119
Query: 416 EIWQVPPMFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIE--RSLEDRQNLIFRVT 473
EI QVPP SAIKV G++ Y ++R GE +EL+ R +++ +F++ R D ++ +T
Sbjct: 120 EIMQVPPQVSAIKVDGQRAYRRSRAGERVELAARPVTVHRFEVTGIRRSGDVIDVDAVIT 179
Query: 474 CSKGTYIRSLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
CS GTYIR+L D G ALG HLT LRR +G+Y + A EL +
Sbjct: 180 CSSGTYIRALARDLGAALGVHGHLTRLRRTRVGRYGVESARTIDELSD 227
>gi|406024985|ref|YP_006705286.1| tRNA pseudouridine synthase B [Cardinium endosymbiont cEper1 of
Encarsia pergandiella]
gi|404432584|emb|CCM09866.1| tRNA pseudouridine synthase B [Cardinium endosymbiont cEper1 of
Encarsia pergandiella]
Length = 226
Score = 199 bits (505), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 95/211 (45%), Positives = 140/211 (66%), Gaps = 2/211 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+ +V+KP GWTSF V K+R +K+KK+GHAGTLDP+ATGLL++C G+ TK + QG+
Sbjct: 12 IFMVHKPLGWTSFDVVKKIRCALKIKKIGHAGTLDPLATGLLLLCSGRQTKTISTLQGLD 71
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y+G LG+ T + D ++P ++HI +E + AAA+F G I Q+PP++SAIK+G
Sbjct: 72 KVYTGQMVLGKTTPSMDLETPFNSLSSYDHITEEMVHAAAATFVGAITQIPPIYSAIKIG 131
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKA 490
G++ Y AR+GE+ L PR I+I F + + + + F++ CSKGTY+RSL D G+
Sbjct: 132 GKRAYKMARQGEAALLLPRSITIHAFLL--TAFNLPFVDFKLVCSKGTYVRSLIHDLGQK 189
Query: 491 LGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
LG A+L AL R IG Y + A+ +EL +
Sbjct: 190 LGVGAYLHALCRTQIGNYCLEQAYSLEELLQ 220
>gi|336172395|ref|YP_004579533.1| tRNA pseudouridine synthase B [Lacinutrix sp. 5H-3-7-4]
gi|334726967|gb|AEH01105.1| tRNA pseudouridine synthase B [Lacinutrix sp. 5H-3-7-4]
Length = 232
Score = 198 bits (504), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 101/223 (45%), Positives = 142/223 (63%), Gaps = 8/223 (3%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR----RLVKVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G ++L++KP WTSF V KLR + K+KK VGHAGTLDP+ATGLL++C GK TK
Sbjct: 9 GQVLLIDKPLNWTSFQVVNKLRWEIKQAFKIKKIKVGHAGTLDPLATGLLVICTGKMTKQ 68
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ +QG IK Y+G LG T ++D ++ + + HI + I + F GEI Q PP
Sbjct: 69 INTFQGQIKEYTGTIVLGSTTPSFDLETEINKTFSTSHITNYLIHQTTKQFIGEIDQFPP 128
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRS 482
+FSA+K G+++Y+ AR GE +E+ R+I+I F+I E+ + FRV CSKGTYIRS
Sbjct: 129 VFSALKKDGKRLYEFARAGEDVEIKSRKITINAFEITNIKENTVD--FRVVCSKGTYIRS 186
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAITK 525
L DFGKAL S HL+ LRR IG ++ ++A + A+ K
Sbjct: 187 LANDFGKALNSGGHLSVLRRTKIGDFNVENALSIESFITALPK 229
>gi|254442056|ref|ZP_05055532.1| tRNA pseudouridine synthase B [Verrucomicrobiae bacterium DG1235]
gi|198256364|gb|EDY80672.1| tRNA pseudouridine synthase B [Verrucomicrobiae bacterium DG1235]
Length = 240
Score = 198 bits (504), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 98/214 (45%), Positives = 145/214 (67%), Gaps = 7/214 (3%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L++KP G TS V ++RR +++K++GHAGTLDPMATGLLI+ VGKATKL +
Sbjct: 10 VLLIDKPSGMTSHDVVDQVRRKLRMKRIGHAGTLDPMATGLLIILVGKATKLSQFLTSLD 69
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K YSG +LGE+T+T DAD + +P + E ++A +F G+ +Q PPMFSA+K+
Sbjct: 70 KTYSGTIKLGESTNTQDADGEITTTKPVPELTQEQAQEALNAFVGDQYQTPPMFSAVKIN 129
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIER-SLEDRQNLIFRVTCSKGTYIRSLCADFGK 489
G+++Y AR+G+ +E PR I + +F+I R +L + + F + CSKGTY+R+L +DFG+
Sbjct: 130 GQRLYKLARKGQEVEREPRFIRVSKFEITRFALPE---IDFTLDCSKGTYVRTLASDFGE 186
Query: 490 ALGSCAHLTALRRDSIGQYSADDAWE---FKELE 520
L AHLTALRRD+ Q+ + E FKE+E
Sbjct: 187 KLECGAHLTALRRDASDQFDTSRSIELDSFKEME 220
>gi|374599764|ref|ZP_09672766.1| tRNA pseudouridine synthase B [Myroides odoratus DSM 2801]
gi|423324921|ref|ZP_17302762.1| tRNA pseudouridine synthase B [Myroides odoratimimus CIP 103059]
gi|373911234|gb|EHQ43083.1| tRNA pseudouridine synthase B [Myroides odoratus DSM 2801]
gi|404606930|gb|EKB06464.1| tRNA pseudouridine synthase B [Myroides odoratimimus CIP 103059]
Length = 235
Score = 198 bits (503), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 100/221 (45%), Positives = 139/221 (62%), Gaps = 8/221 (3%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVK------KVGHAGTLDPMATGLLIVCVGKATKL 362
G ++L++KP W+SF K++ L+K + KVGHAGTLDP+ATGLL++C GKATK
Sbjct: 11 GQVLLIDKPLHWSSFQAVNKIKWLLKKEYGLKKIKVGHAGTLDPLATGLLLICTGKATKT 70
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
+ QG K Y+G F +G T ++D ++ + Q P HI +E I + SF G Q PP
Sbjct: 71 ITDLQGQEKEYTGTFHIGATTPSYDLETEINQTFPTNHITEEMIEQTRVSFLGTTEQRPP 130
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRS 482
+FSA+K G+++Y+ AR+GE +E+S R I+I F++ R + FRV CSKGTYIRS
Sbjct: 131 IFSALKKDGKRLYEHARKGEEVEISTRPITISDFELTRV--ALPEIDFRVACSKGTYIRS 188
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
L DFG+ L S HLTALRR IG Y +A + EE +
Sbjct: 189 LAFDFGEKLNSGGHLTALRRTKIGDYDVANALSIETFEEKV 229
>gi|374595815|ref|ZP_09668819.1| tRNA pseudouridine synthase B [Gillisia limnaea DSM 15749]
gi|373870454|gb|EHQ02452.1| tRNA pseudouridine synthase B [Gillisia limnaea DSM 15749]
Length = 233
Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 103/222 (46%), Positives = 145/222 (65%), Gaps = 10/222 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLV------KVKKVGHAGTLDPMATGLLIVCVGKATKL 362
G ++L +KP GWTSF + K+R L+ K KVGHAGTLDP+A+GLLI+C GK TK
Sbjct: 14 GQILLFDKPLGWTSFQLVNKVRWLIRKSCNIKKIKVGHAGTLDPLASGLLILCTGKFTKK 73
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ YQ K Y+G LG T ++D ++ V + +HI +EDI A F GEI QVPP
Sbjct: 74 IEEYQAQEKEYTGTITLGATTPSYDMETEVNESFGIDHISEEDIIGATLEFLGEIDQVPP 133
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDR-QNLIFRVTCSKGTYIR 481
+FSA+K G+++Y+ AR GE +E+ R++ I +F+I E R + FRVTCSKGTYIR
Sbjct: 134 VFSALKKEGKRLYEYARNGEDVEIPSRKVEIKEFEIT---EIRFPEVDFRVTCSKGTYIR 190
Query: 482 SLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
SL DFGK+LG+ A+L++LRR IG + +D+ + E +
Sbjct: 191 SLANDFGKSLGTGAYLSSLRRTKIGGFIVEDSLDIASFENLL 232
>gi|408491387|ref|YP_006867756.1| tRNA pseudouridine synthase TruB [Psychroflexus torquis ATCC
700755]
gi|408468662|gb|AFU69006.1| tRNA pseudouridine synthase TruB [Psychroflexus torquis ATCC
700755]
Length = 232
Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 101/221 (45%), Positives = 144/221 (65%), Gaps = 8/221 (3%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVK------KVGHAGTLDPMATGLLIVCVGKATKL 362
G ++L +KP WTSF V K+R L+K K KVGHAGTLDP+ATGL+I+C GKATK
Sbjct: 12 GQILLFDKPLHWTSFQVVNKVRWLIKQKFDLKKLKVGHAGTLDPLATGLVILCTGKATKT 71
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ G K Y+G F +G T ++D ++ V + HI E I+ FRGEI Q PP
Sbjct: 72 IESLMGQTKIYTGEFTVGATTPSYDMETEVDKTFETSHITTELIQNTLPQFRGEIMQRPP 131
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRS 482
+FSA+K G+++Y+ AR+GES+++ R+++I FDI ++ + N F++ CSKGTYIRS
Sbjct: 132 IFSALKKEGKRLYEYARKGESVDIPKRQVNIDSFDIIQNNFPKLN--FKIQCSKGTYIRS 189
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
L DFG+AL S A+L+ LRR IG Y+ A ++ E+ I
Sbjct: 190 LAYDFGEALNSGAYLSELRRTQIGDYNVKKALSIEDFEKLI 230
>gi|395802203|ref|ZP_10481456.1| tRNA pseudouridine synthase B [Flavobacterium sp. F52]
gi|395435444|gb|EJG01385.1| tRNA pseudouridine synthase B [Flavobacterium sp. F52]
Length = 229
Score = 196 bits (498), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 99/221 (44%), Positives = 139/221 (62%), Gaps = 9/221 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVK-------KVGHAGTLDPMATGLLIVCVGKATK 361
G ++L++KP W+SF KL+ L+ K K+GHAGTLDP+ATGLL++C GK TK
Sbjct: 9 GQVLLIDKPLKWSSFQAVNKLKYLLINKVGLPKKFKIGHAGTLDPLATGLLLICTGKFTK 68
Query: 362 LVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVP 421
+ Q K Y+G F +G T ++D ++ + Q P +HI ++ I + F GEI Q P
Sbjct: 69 KISELQDQAKEYTGTFYIGATTPSYDLETEIDQTFPTDHINEDLIHETVKQFLGEIDQKP 128
Query: 422 PMFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIR 481
P+FSAIK G ++Y+ AR GESIE+ R+ +I +F+I R + FRV CSKGTYIR
Sbjct: 129 PIFSAIKKDGVRLYEHARAGESIEIESRKTTIHEFEITRIALPEVD--FRVVCSKGTYIR 186
Query: 482 SLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEA 522
SL DFGKA+ S +HLT LRR IG ++ +A + EE+
Sbjct: 187 SLAYDFGKAMNSGSHLTVLRRTKIGDHNVKNAIDITLFEES 227
>gi|372221882|ref|ZP_09500303.1| tRNA pseudouridine synthase B [Mesoflavibacter zeaxanthinifaciens
S86]
Length = 234
Score = 196 bits (497), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 95/212 (44%), Positives = 139/212 (65%), Gaps = 9/212 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVK-------KVGHAGTLDPMATGLLIVCVGKATK 361
G +L++KP W+SF L+ ++ K K+GHAGTLDP+ATGLL++C GK TK
Sbjct: 12 GQTLLIDKPLNWSSFQAVNALKWAIRKKFDLNKKFKIGHAGTLDPLATGLLLICTGKHTK 71
Query: 362 LVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVP 421
+ QG K Y+G+ LG T ++D ++ + Q +HI + I+ A F GEI Q P
Sbjct: 72 TIPSLQGQEKEYTGIITLGATTPSYDLETEIDQTFSTDHITETLIKATTAKFLGEIDQRP 131
Query: 422 PMFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIR 481
P+FSA+K G+++Y+ AR+GE++ + R+I+I F+I + D+ N+ FRV+CSKGTYIR
Sbjct: 132 PIFSALKKDGKRLYEHARKGETVAIPTRKITISAFEITQI--DQLNVHFRVSCSKGTYIR 189
Query: 482 SLCADFGKALGSCAHLTALRRDSIGQYSADDA 513
SL DFG+AL + HLTALRR IG ++ D+A
Sbjct: 190 SLAHDFGQALQTGGHLTALRRTKIGTFNVDNA 221
>gi|443289484|ref|ZP_21028578.1| tRNA pseudouridine synthase B (tRNA pseudouridine 55 synthase)
(Psi55 synthase) (Pseudouridylate synthase) (Uracil
hydrolyase) [Micromonospora lupini str. Lupac 08]
gi|385887637|emb|CCH16652.1| tRNA pseudouridine synthase B (tRNA pseudouridine 55 synthase)
(Psi55 synthase) (Pseudouridylate synthase) (Uracil
hydrolyase) [Micromonospora lupini str. Lupac 08]
Length = 294
Score = 194 bits (494), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 98/214 (45%), Positives = 138/214 (64%), Gaps = 3/214 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++V+KP G TS V ++RRL K ++VGH GTLDPMATG+L++ VG+AT+L+ G
Sbjct: 6 LIVVDKPGGMTSHDVVARIRRLAKTRRVGHGGTLDPMATGVLVIGVGRATRLLTYVIGAG 65
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y+G RLG+AT T DA+ VI P + D+ IR A + GE+ QVP SAIK+
Sbjct: 66 KSYTGTIRLGQATVTDDAEGDVIASTPAGQVTDDAIRSALTALSGEVDQVPSAVSAIKID 125
Query: 431 GEKMYDKARRGESIELSPRRISIFQFD---IERSLEDRQNLIFRVTCSKGTYIRSLCADF 487
G++ Y + R GES+EL RR++I + + I R+ D ++ VTCS GTYIR++ D
Sbjct: 126 GQRAYKRVRDGESVELPARRVTISRLEVLAIRRTEPDVVDVDVDVTCSSGTYIRAIARDA 185
Query: 488 GKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
G ALG HLTALRR ++G ++ +A ELEE
Sbjct: 186 GLALGVGGHLTALRRTAVGGFTLAEAATLDELEE 219
>gi|224055589|ref|XP_002298554.1| predicted protein [Populus trichocarpa]
gi|222845812|gb|EEE83359.1| predicted protein [Populus trichocarpa]
Length = 95
Score = 194 bits (494), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 91/95 (95%), Positives = 95/95 (100%)
Query: 434 MYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKALGS 493
MY+KAR+GESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKALGS
Sbjct: 1 MYEKARKGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKALGS 60
Query: 494 CAHLTALRRDSIGQYSADDAWEFKELEEAITKNYF 528
CAHLTALRRDSIG+YSA+DAWEFKELEEAITKNYF
Sbjct: 61 CAHLTALRRDSIGEYSAEDAWEFKELEEAITKNYF 95
>gi|410029797|ref|ZP_11279627.1| tRNA pseudouridine synthase B [Marinilabilia sp. AK2]
Length = 228
Score = 194 bits (493), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 101/219 (46%), Positives = 142/219 (64%), Gaps = 5/219 (2%)
Query: 307 PFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRY 366
P+G + LV+KP WTSF V K+R +K+KKVGHAGTLDP+ATGLLIVC GK TK ++ +
Sbjct: 6 PYGEVFLVDKPYEWTSFDVVKKIRNALKIKKVGHAGTLDPLATGLLIVCTGKKTKSIETF 65
Query: 367 QGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSA 426
G K Y+G F LG+ T ++D + VI+ + EDI KA G+I QVPP SA
Sbjct: 66 MGQEKEYTGTFVLGKTTESFDLEREVIEVSDPSLLNIEDIIKATIQLTGDILQVPPAHSA 125
Query: 427 IKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCAD 486
IKV G+++Y AR+GE ++L R +++ +F+I + + FR+ CSKGTYIRSL D
Sbjct: 126 IKVDGKRVYKAARKGEEVKLEARPVTVSEFEITGF--ENPEVHFRIVCSKGTYIRSLARD 183
Query: 487 FGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAITK 525
G LG A+L+ L R IG + ++A ++L++ ITK
Sbjct: 184 LGDILGVGAYLSKLCRTRIGDFKLEEA---EQLDKLITK 219
>gi|399055581|ref|ZP_10743276.1| tRNA pseudouridine 55 synthase [Brevibacillus sp. CF112]
gi|398046790|gb|EJL39374.1| tRNA pseudouridine 55 synthase [Brevibacillus sp. CF112]
Length = 308
Score = 194 bits (493), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 98/215 (45%), Positives = 140/215 (65%), Gaps = 4/215 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++++KP G TS ++RRL KKVGH GTLDP TG+L +CVG AT+LV+ Q +
Sbjct: 7 VLVIDKPAGMTSHDCVARIRRLYGTKKVGHTGTLDPDVTGVLPICVGNATRLVEYLQDLP 66
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWE--HIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
K Y+ V RLG AT+T DA V+++ P + I E I + SF GEI QVPPMFSA+K
Sbjct: 67 KRYNVVLRLGSATTTEDASGEVLEQAPVDAAAITVERIEQLLQSFLGEIEQVPPMFSAVK 126
Query: 429 VGGEKMYDKARRGESIELSPRRISIFQFDIE--RSLEDRQNLIFRVTCSKGTYIRSLCAD 486
V G+++YD AR G IE PR++++++ + ++ D ++ F TCSKGTY+R+LC D
Sbjct: 127 VNGKRLYDLAREGTVIERQPRKVTLYELTLHEIKADGDSVDISFTCTCSKGTYMRTLCVD 186
Query: 487 FGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
G+ALG AH+ LRR G + ++A +ELEE
Sbjct: 187 LGRALGYPAHMKLLRRIKSGPFVEEEAIPLQELEE 221
>gi|372209507|ref|ZP_09497309.1| tRNA pseudouridine synthase B [Flavobacteriaceae bacterium S85]
Length = 234
Score = 194 bits (493), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 100/217 (46%), Positives = 137/217 (63%), Gaps = 8/217 (3%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVK------KVGHAGTLDPMATGLLIVCVGKATKL 362
G ++L++KP WTSF V KLR +K KVGHAGTLDP+ATGLLI+C GK TK
Sbjct: 10 GQVLLIDKPLHWTSFQVVNKLRWAIKQHYGIKNIKVGHAGTLDPLATGLLILCTGKFTKK 69
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ YQ K Y+G LG T ++D ++ + Q HI + I F GEI Q PP
Sbjct: 70 IETYQAQHKEYTGTITLGATTPSYDLETDIDQTYSINHITEALIHATTKKFVGEIDQKPP 129
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRS 482
+FSAIK G+++Y+ AR G++ E+ R+I+I +F+I + + N+ FRV CSKGTYIRS
Sbjct: 130 IFSAIKKEGKRLYELAREGKTTEIKSRKITISEFEITKI--ELPNVEFRVACSKGTYIRS 187
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKEL 519
L DFG AL S +HL+ALRR IG ++ D++ E
Sbjct: 188 LAYDFGLALNSGSHLSALRRTKIGDFNVDNSVSVTEF 224
>gi|110637358|ref|YP_677565.1| pseudouridylate synthase [Cytophaga hutchinsonii ATCC 33406]
gi|110280039|gb|ABG58225.1| tRNA pseudouridine synthase B [Cytophaga hutchinsonii ATCC 33406]
Length = 225
Score = 194 bits (492), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 100/221 (45%), Positives = 139/221 (62%), Gaps = 3/221 (1%)
Query: 302 PTWDGPFGTMVL-VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKAT 360
PT + P +VL ++KP WTSF V K+RR++K+KKVGHAGTLDP+ATGLLIVC GK T
Sbjct: 2 PTNESPQHDLVLCLDKPYHWTSFDVVKKVRRVLKMKKVGHAGTLDPLATGLLIVCTGKKT 61
Query: 361 KLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQV 420
K ++ K YSG LG T+++D + P+ + + IRK F G I Q+
Sbjct: 62 KTIESLMADEKEYSGAIGLGATTASYDLELPLENHTDISGLTETQIRKTVKQFLGTITQI 121
Query: 421 PPMFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYI 480
PP+ SA+KV G++ YD+AR+G + + R++ I +F I + + + F + CSKGTYI
Sbjct: 122 PPIHSAVKVDGKRAYDEARKGNEVIIKSRQVFIKEFKITKV--ELPLVYFNIVCSKGTYI 179
Query: 481 RSLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
R++ DFGKALG HL ALRR+ IG S A ++LEE
Sbjct: 180 RTIANDFGKALGCGGHLNALRRERIGTLSVKQALTPEQLEE 220
>gi|325285813|ref|YP_004261603.1| tRNA pseudouridine synthase B [Cellulophaga lytica DSM 7489]
gi|324321267|gb|ADY28732.1| tRNA pseudouridine synthase B [Cellulophaga lytica DSM 7489]
Length = 236
Score = 194 bits (492), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 97/211 (45%), Positives = 137/211 (64%), Gaps = 8/211 (3%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVK------KVGHAGTLDPMATGLLIVCVGKATKL 362
G ++L++KP W+SF L+ ++ K K+GHAGTLDP+ATGLLI+C GK TK
Sbjct: 10 GQILLIDKPLTWSSFQAVNALKWGIRRKFDLKKIKIGHAGTLDPLATGLLIICTGKFTKK 69
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
+ QG IK Y+G +G T ++D ++ V + P EHI E I A +F G+I QVPP
Sbjct: 70 IPTLQGQIKEYTGTITVGATTPSYDMETAVEKTYPTEHITTEKIHAATTNFIGKIQQVPP 129
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRS 482
+FSA+K G+++Y+ AR G+++E+ R I I +F+I + + FRV CSKGTYIRS
Sbjct: 130 VFSALKKDGKRLYEYAREGQAVEVKSREIEITEFEITNI--NLPEIEFRVVCSKGTYIRS 187
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDA 513
L DFGKAL S +L+ALRR IG ++ D+A
Sbjct: 188 LANDFGKALQSGGYLSALRRTKIGDFNVDNA 218
>gi|298207495|ref|YP_003715674.1| tRNA pseudouridine synthase [Croceibacter atlanticus HTCC2559]
gi|83850131|gb|EAP87999.1| putative tRNA pseudouridine synthase [Croceibacter atlanticus
HTCC2559]
Length = 238
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 97/217 (44%), Positives = 138/217 (63%), Gaps = 8/217 (3%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLV------KVKKVGHAGTLDPMATGLLIVCVGKATKL 362
G ++L++KP WTSF V K+R ++ K KVGHAGTLDP+ATGLL++C GK TK
Sbjct: 14 GQVLLLDKPLEWTSFQVVNKVRWMIRKSCDIKKIKVGHAGTLDPLATGLLLICTGKFTKT 73
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ G K Y+G LG T ++D ++ V + HI + I A F G+I Q PP
Sbjct: 74 INELMGQEKEYTGTITLGATTPSYDLETVVNENFDISHITADLIHNTTAQFTGDILQQPP 133
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRS 482
+FSA+K G ++Y+ AR+GE++++ R++ I F+I D N+ FRVTCSKGTYIRS
Sbjct: 134 IFSALKKDGVRLYEHARKGETVDIPKRQVHISAFEITNI--DMPNVEFRVTCSKGTYIRS 191
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKEL 519
L DFGKAL S HL+ LRR IG ++ +DA + ++
Sbjct: 192 LANDFGKALQSGGHLSVLRRTKIGDFNVNDALKIEDF 228
>gi|402832338|ref|ZP_10880988.1| tRNA pseudouridine(55) synthase [Capnocytophaga sp. CM59]
gi|402277613|gb|EJU26686.1| tRNA pseudouridine(55) synthase [Capnocytophaga sp. CM59]
Length = 237
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 99/212 (46%), Positives = 135/212 (63%), Gaps = 8/212 (3%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVK------KVGHAGTLDPMATGLLIVCVGKATKL 362
GT++L++KP W+SF KL+ + K K+GHAGTLDP+ATGLLI+C GK TK
Sbjct: 7 GTIILIDKPLHWSSFQAVNKLKWAIMKKYRLKKFKIGHAGTLDPLATGLLILCTGKHTKQ 66
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
+ + Q K Y+G LG T ++D ++ + P EHI E I + F G++ Q PP
Sbjct: 67 IPQIQDAPKIYTGTIALGATTPSYDLETEIDATFPTEHITPELIEQVREQFVGDLIQAPP 126
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRS 482
+FSAIK G+++Y+ AR+GE+ E+ R I+I +E SL + L F+V CSKGTYIRS
Sbjct: 127 LFSAIKKDGKRLYELARKGETTEVPKRAITIHA--LELSLTGEKELSFKVHCSKGTYIRS 184
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDAW 514
L D GKALGS AHLT+LRR IG Y+ A+
Sbjct: 185 LVHDIGKALGSGAHLTSLRRTQIGAYAVAQAY 216
>gi|224540974|ref|ZP_03681513.1| hypothetical protein CATMIT_00125 [Catenibacterium mitsuokai DSM
15897]
gi|224526125|gb|EEF95230.1| tRNA pseudouridine synthase B [Catenibacterium mitsuokai DSM 15897]
Length = 277
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 95/211 (45%), Positives = 138/211 (65%), Gaps = 4/211 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L+NKP+G TS V ++RR++ KKVGH GTLDPMATG+L+V + KATK +
Sbjct: 4 IILINKPQGMTSHDVVNRVRRIMHTKKVGHCGTLDPMATGVLVVGINKATKAMQFLMSEE 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y +LG AT T+D++ V++ +P+ D + +SF+G+ Q PPM+SAIK+
Sbjct: 64 KEYRATLKLGSATDTYDSEGKVLETKPFTGYDHLD--EVLSSFKGDSMQKPPMYSAIKIN 121
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKA 490
G+K+Y+ AR G +E+ R I+I++ D+ + +D + V CSKGTYIRSLC D GKA
Sbjct: 122 GKKLYEYAREGIEVEVPERPIAIYKLDLVNAHDDE--ITIDVKCSKGTYIRSLCVDIGKA 179
Query: 491 LGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
LG AH+TAL R+ G ++ D A +ELEE
Sbjct: 180 LGYPAHMTALVRNQSGHFTIDQAVTLEELEE 210
>gi|345868996|ref|ZP_08820959.1| tRNA pseudouridine synthase B [Bizionia argentinensis JUB59]
gi|344046480|gb|EGV42141.1| tRNA pseudouridine synthase B [Bizionia argentinensis JUB59]
Length = 231
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 99/211 (46%), Positives = 136/211 (64%), Gaps = 8/211 (3%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLV------KVKKVGHAGTLDPMATGLLIVCVGKATKL 362
G ++L++KP WTSF KLR + K KVGHAGTLDP+ATGLLI+C GK TK
Sbjct: 10 GQVLLIDKPLNWTSFQAVNKLRWEIRNAFDIKKIKVGHAGTLDPLATGLLIICTGKMTKQ 69
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
+D +QG K Y+G LG T ++D ++ + P EHI + I +A F G+I Q PP
Sbjct: 70 IDSFQGQDKEYTGTIVLGGTTPSYDLETEIDTTFPTEHITETMIHEATKQFIGDIDQFPP 129
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRS 482
+FSA+K G+++Y+ AR GE +E++ R+I I F+I + ++D N+ FR+ C KGTYIRS
Sbjct: 130 VFSALKKEGKRLYEYARAGEEVEINSRKIHISTFEITK-IKDL-NIDFRIVCGKGTYIRS 187
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDA 513
+ DFGKAL S HL+ LRR IG + D A
Sbjct: 188 IAHDFGKALSSGGHLSVLRRTKIGDFHVDKA 218
>gi|255533428|ref|YP_003093800.1| tRNA pseudouridine synthase B [Pedobacter heparinus DSM 2366]
gi|255346412|gb|ACU05738.1| tRNA pseudouridine synthase B [Pedobacter heparinus DSM 2366]
Length = 228
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 102/213 (47%), Positives = 135/213 (63%), Gaps = 4/213 (1%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVKK--VGHAGTLDPMATGLLIVCVGKATKLVDRY 366
G ++L+NKP WTSF V GK+R +K K VGHAGTLDP+ATGLLI+C GK TK +D +
Sbjct: 9 GELLLINKPYKWTSFDVVGKIRNSLKPLKLKVGHAGTLDPLATGLLILCTGKLTKQIDTF 68
Query: 367 QGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSA 426
Q K Y+G LG T ++D ++ V Q P + I + I A A F G+I Q PP SA
Sbjct: 69 QAEEKEYTGTMVLGATTPSYDLETVVDQEFPLDGITEGAIYAATAPFIGDIQQYPPAHSA 128
Query: 427 IKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCAD 486
+KV GE++Y KARRGE EL R +++ F+I R + FR+ CSKGTYIRSL AD
Sbjct: 129 VKVNGERLYVKARRGEETELRLRNVTVSAFEITRI--ALPEIDFRIVCSKGTYIRSLVAD 186
Query: 487 FGKALGSCAHLTALRRDSIGQYSADDAWEFKEL 519
FGK L + A+L+ L R G + ++A E +L
Sbjct: 187 FGKQLNNGAYLSKLVRTRSGNFLLENALEVNDL 219
>gi|255035039|ref|YP_003085660.1| tRNA pseudouridine synthase B [Dyadobacter fermentans DSM 18053]
gi|254947795|gb|ACT92495.1| tRNA pseudouridine synthase B [Dyadobacter fermentans DSM 18053]
Length = 244
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 97/208 (46%), Positives = 129/208 (62%), Gaps = 2/208 (0%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQG 368
G ++L++KP WTSF V KL+R K KK+GHAGTLDP+ATGLLI+C GK TK +D +Q
Sbjct: 22 GEVILIDKPLTWTSFDVANKLKRACKFKKIGHAGTLDPLATGLLILCTGKKTKQIDNFQA 81
Query: 369 MIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
K Y+G LG+ T + D +S P +HI E + A G I QVPP+FSAIK
Sbjct: 82 QEKEYTGTLVLGKTTPSIDLESDFDAEYPTDHITPEVLENARQQLTGHIEQVPPLFSAIK 141
Query: 429 VGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFG 488
+ G + Y ARRGE E+ R + I F+I+ + ++ FR+ CSKGTYIRS+ DFG
Sbjct: 142 IDGVRAYKLARRGEEAEIKKRAVEIKLFEIDAT--HFPSIDFRIICSKGTYIRSMVRDFG 199
Query: 489 KALGSCAHLTALRRDSIGQYSADDAWEF 516
GS A+++ L R IG + DAWE
Sbjct: 200 VLAGSGAYMSKLCRTRIGDFELKDAWEL 227
>gi|433546003|ref|ZP_20502341.1| tRNA pseudouridine synthase B [Brevibacillus agri BAB-2500]
gi|432182619|gb|ELK40182.1| tRNA pseudouridine synthase B [Brevibacillus agri BAB-2500]
Length = 308
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 98/215 (45%), Positives = 139/215 (64%), Gaps = 4/215 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++++KP G TS ++RRL KKVGH GTLDP TG+L +CVG AT+LV+ Q +
Sbjct: 7 VLVIDKPAGMTSHDCVARIRRLYGTKKVGHTGTLDPDVTGVLPICVGNATRLVEYLQDLP 66
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWE--HIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
K Y+ V RLG AT+T DA V+++ P + I E I + SF GEI QVPPMFSA+K
Sbjct: 67 KRYNVVLRLGSATTTEDASGEVLEQAPVDAAAITVERIEQLLQSFLGEIEQVPPMFSAVK 126
Query: 429 VGGEKMYDKARRGESIELSPRRISIFQFDIE--RSLEDRQNLIFRVTCSKGTYIRSLCAD 486
V G+++YD AR G IE PR++++++ + + D ++ F TCSKGTY+R+LC D
Sbjct: 127 VNGKRLYDLAREGTVIERQPRKVTLYELTLHEIKVDGDSVDISFTCTCSKGTYMRTLCVD 186
Query: 487 FGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
G+ALG AH+ LRR G + ++A +ELEE
Sbjct: 187 LGRALGYPAHMKLLRRIKSGPFVEEEAIPLQELEE 221
>gi|402495404|ref|ZP_10842131.1| tRNA pseudouridine synthase B [Aquimarina agarilytica ZC1]
Length = 229
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 105/223 (47%), Positives = 147/223 (65%), Gaps = 11/223 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVK------KVGHAGTLDPMATGLLIVCVGKATKL 362
G +L++KP W+SF V KLR L++ + KVGHAGTLDP+ATGLL++C GK TK
Sbjct: 9 GQTLLIDKPLEWSSFQVVNKLRWLIRKQFDIKKIKVGHAGTLDPLATGLLLICTGKFTKT 68
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ QG IK Y+G LG T ++D ++ + P H+ +E I +A F G+I Q PP
Sbjct: 69 INELQGQIKEYTGTITLGTTTPSYDLETEFDAKYPTHHLTEEVIHEATKQFLGKIEQYPP 128
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRS 482
+FSA+K G+++Y+ AR E +++SPR I I +F+I + + N+ FRV CSKGTYIRS
Sbjct: 129 VFSALKKDGKRLYEYARNNEEVKISPRIIEINEFEI--TAINGLNVEFRVVCSKGTYIRS 186
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDA---WEFKELEEA 522
L DFGKAL S AHL+ LRR IG+YS ++A F+EL +A
Sbjct: 187 LAHDFGKALSSGAHLSVLRRTKIGEYSVENAITPLAFEELLKA 229
>gi|89889580|ref|ZP_01201091.1| pseudouridine synthase [Flavobacteria bacterium BBFL7]
gi|89517853|gb|EAS20509.1| pseudouridine synthase [Flavobacteria bacterium BBFL7]
Length = 236
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 94/226 (41%), Positives = 143/226 (63%), Gaps = 8/226 (3%)
Query: 301 PPTWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVK------KVGHAGTLDPMATGLLIV 354
P T G ++L++KP GW+SF V K+R L+K + KVGHAGTLDP+A+GLLI+
Sbjct: 7 PVTNPYQLGQVLLIDKPLGWSSFQVVNKIRWLIKQEYGIKKIKVGHAGTLDPLASGLLII 66
Query: 355 CVGKATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFR 414
C GK TK + YQ K Y+G LG T ++D ++ + R P + +E++ + F
Sbjct: 67 CTGKETKNIHVYQAQEKEYTGTITLGATTPSYDLETEIDNRFPISELTEENLIQTTNQFT 126
Query: 415 GEIWQVPPMFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTC 474
G+I Q PP++SAIK G+++Y+ AR GE+ E+ R +++ F++ + + + FR+ C
Sbjct: 127 GDIMQKPPIYSAIKKDGKRLYELARAGETTEIKEREVNVQAFELTQIKLPKVD--FRIAC 184
Query: 475 SKGTYIRSLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELE 520
SKGTYIRS+ D+GKAL + HL+ALRR +IG Y ++A +E E
Sbjct: 185 SKGTYIRSMAHDYGKALNNGGHLSALRRTAIGNYRVENAISLEEFE 230
>gi|289705311|ref|ZP_06501709.1| tRNA pseudouridine synthase B [Micrococcus luteus SK58]
gi|289557974|gb|EFD51267.1| tRNA pseudouridine synthase B [Micrococcus luteus SK58]
Length = 321
Score = 192 bits (489), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 97/215 (45%), Positives = 134/215 (62%), Gaps = 4/215 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+VLV+KP+GWTS V G++RRL +KVGHAGTLDPMATGLL+V V KAT+L+ G
Sbjct: 21 VVLVDKPQGWTSHDVVGRVRRLAGTRKVGHAGTLDPMATGLLVVGVNKATRLLTAITGTD 80
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y+ RLG++T T DA+ V+Q + E + + A+ GEI QVP SA+KV
Sbjct: 81 KTYTATIRLGQSTVTDDAEGEVVQTRLANAVTPERVAEQVAALTGEILQVPSAVSAVKVA 140
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIE--RSLEDRQ--NLIFRVTCSKGTYIRSLCAD 486
G + YD+ R GE + L R +++ +F + R L+ + +L V CS GTYIR+L D
Sbjct: 141 GRRAYDRVRAGEDVTLDARPVTVHEFTVHELRRLDGGRLVDLDVTVRCSSGTYIRALARD 200
Query: 487 FGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
G+AL + HLTALRR ++G + DA + L E
Sbjct: 201 LGEALETGGHLTALRRTAVGPFDVADALTLEALAE 235
>gi|332291904|ref|YP_004430513.1| tRNA pseudouridine synthase B [Krokinobacter sp. 4H-3-7-5]
gi|332169990|gb|AEE19245.1| tRNA pseudouridine synthase B [Krokinobacter sp. 4H-3-7-5]
Length = 235
Score = 192 bits (489), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 101/211 (47%), Positives = 137/211 (64%), Gaps = 8/211 (3%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLV------KVKKVGHAGTLDPMATGLLIVCVGKATKL 362
G +++ +KP WTSF + K+R L+ K KVGHAGTLDP+ATGL+I+C GK TK
Sbjct: 10 GQVLIFDKPLEWTSFQLVNKVRWLIRKNLNIKKIKVGHAGTLDPLATGLMIICTGKFTKR 69
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
+ + G K Y+G LG T ++D ++ V Q EHI DEDI A +++G I Q PP
Sbjct: 70 LHEFVGQEKEYTGTIVLGGTTPSYDLETEVDQTFSTEHITDEDIYAFAKAYQGNIMQRPP 129
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRS 482
+FSA+K G+++Y+ AR GE +++S R I+I F+I R + F+V CSKGTYIRS
Sbjct: 130 VFSALKKEGKRLYEFARAGEEVDISKREINISSFEITRIAMPEVD--FKVRCSKGTYIRS 187
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDA 513
L DFG+ L S AHL+ALRR IG Y+ DDA
Sbjct: 188 LAFDFGEGLKSGAHLSALRRTKIGNYNVDDA 218
>gi|72161185|ref|YP_288842.1| tRNA pseudouridine synthase B [Thermobifida fusca YX]
gi|91208108|sp|Q47RU8.1|TRUB_THEFY RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|71914917|gb|AAZ54819.1| tRNA pseudouridine synthase B [Thermobifida fusca YX]
Length = 293
Score = 192 bits (488), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 96/220 (43%), Positives = 134/220 (60%), Gaps = 6/220 (2%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP GWTS V ++RRL ++VGHAGTLDPMATG+L+V VGKAT+L+
Sbjct: 5 VVIVDKPAGWTSHDVVARVRRLAGTRRVGHAGTLDPMATGVLVVGVGKATRLLGYLALTE 64
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y RLG++T+T DA+ +++R P +HI + + + G I QVPP SA+KV
Sbjct: 65 KVYEATIRLGQSTTTDDAEGELLERRPADHIDEAAVHAGTRALTGVIHQVPPQVSAVKVR 124
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIE--RSLEDRQNLIF----RVTCSKGTYIRSLC 484
G++ Y +AR GE++EL R +++ +F + R ++ RVTCS GTYIRSL
Sbjct: 125 GQRAYRRARAGETVELKAREVTVHEFTVTGFRRVDSPDGAFVDVDARVTCSSGTYIRSLA 184
Query: 485 ADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAIT 524
D G LG HLTALRR +G Y+ + A EL T
Sbjct: 185 RDLGADLGVGGHLTALRRTRVGPYTVEQAATLDELAAEFT 224
>gi|378550863|ref|ZP_09826079.1| hypothetical protein CCH26_12279 [Citricoccus sp. CH26A]
Length = 309
Score = 192 bits (487), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 105/235 (44%), Positives = 141/235 (60%), Gaps = 5/235 (2%)
Query: 297 STELPPTWDGPFGT-MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVC 355
S ELP G + +VLV+KP GWTS V GK+RRL +KVGHAGTLDPMATGLL+V
Sbjct: 2 SRELPQGAPGTSASGLVLVDKPAGWTSHDVVGKVRRLAGTRKVGHAGTLDPMATGLLVVG 61
Query: 356 VGKATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRG 415
KAT+L+ G K Y RLG++T T DA+ V+Q + ++ +R A G
Sbjct: 62 FNKATRLLTAITGSDKTYLATVRLGQSTVTDDAEGEVVQTRLANAVTEDRVRAAMLPLTG 121
Query: 416 EIWQVPPMFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIE--RSLEDRQ--NLIFR 471
I QVP SAIKV G + YD+ R GE + L R +++ +F++ R L+ + +L
Sbjct: 122 AIQQVPSTVSAIKVDGRRAYDRVRSGEDVTLQARPVTVRRFELTGFRRLDGGRIVDLDVE 181
Query: 472 VTCSKGTYIRSLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAITKN 526
V CS GTYIR+L D G+AL + HLTALRR ++G +S DDA ++L E T
Sbjct: 182 VDCSSGTYIRALARDLGEALDTGGHLTALRRTAVGPFSVDDAVTIEQLGERFTAT 236
>gi|408675367|ref|YP_006875115.1| tRNA pseudouridine synthase B [Emticicia oligotrophica DSM 17448]
gi|387856991|gb|AFK05088.1| tRNA pseudouridine synthase B [Emticicia oligotrophica DSM 17448]
Length = 232
Score = 192 bits (487), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 90/213 (42%), Positives = 138/213 (64%), Gaps = 2/213 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L++KP WTSF V K+R K KKVGHAGTLDP+ATGLLI+C GK TK +D +Q
Sbjct: 8 VILIDKPLKWTSFDVVNKVRWAGKYKKVGHAGTLDPLATGLLILCTGKMTKQIDTFQAQE 67
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y+G LG+ T + D ++ P EHI + I + G I Q+PP SAIK+
Sbjct: 68 KEYTGTLVLGKTTPSIDLETEFDAEYPIEHINSKTINEVVKQLSGNIEQIPPAHSAIKID 127
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKA 490
G++ Y+ AR+G+ + + PR++ I +F+++ + + + FR+ CSKGTYIRSL DFGK
Sbjct: 128 GKRAYESARKGQEVIIKPRQVEIKEFEVDST--NFPEISFRIVCSKGTYIRSLVRDFGKL 185
Query: 491 LGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
L S A++++LRR IG++ +++ ++ E++
Sbjct: 186 LQSGAYMSSLRRTRIGEFKIENSLTIEQFLESL 218
>gi|284035721|ref|YP_003385651.1| tRNA pseudouridine synthase B [Spirosoma linguale DSM 74]
gi|283815014|gb|ADB36852.1| tRNA pseudouridine synthase B [Spirosoma linguale DSM 74]
Length = 241
Score = 192 bits (487), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 95/210 (45%), Positives = 137/210 (65%), Gaps = 7/210 (3%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQG 368
G ++L++KP WTSF V KL+ K KK+GHAGTLDP+ATGLLI+C GK TK +D+YQ
Sbjct: 12 GQVILIDKPLTWTSFDVANKLKYACKFKKIGHAGTLDPLATGLLILCTGKMTKQIDQYQA 71
Query: 369 MIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
K Y+G LG+ T + D ++ I E I++AA GEI QVPP++SA++
Sbjct: 72 QEKEYTGTLVLGKTTPSVDLETAFDAEFDTTGITPEQIQEAARQLTGEILQVPPIYSAVR 131
Query: 429 VGGEKMYDKARRGESIE-----LSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSL 483
V GE++Y+KARRGE+ + + R++++ FD++ E + FR+ CSKGTYIRSL
Sbjct: 132 VNGERLYEKARRGETADRVEGGIKARQVTVSAFDVDT--ERFPEIDFRIVCSKGTYIRSL 189
Query: 484 CADFGKALGSCAHLTALRRDSIGQYSADDA 513
D G L + A++++LRR IG++ DDA
Sbjct: 190 VRDLGLLLNNGAYMSSLRRTRIGEFRVDDA 219
>gi|409098162|ref|ZP_11218186.1| tRNA pseudouridine synthase B [Pedobacter agri PB92]
Length = 243
Score = 192 bits (487), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 100/213 (46%), Positives = 136/213 (63%), Gaps = 4/213 (1%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVK--VKKVGHAGTLDPMATGLLIVCVGKATKLVDRY 366
G ++L+NKP WTSF V GK+R +K KVGHAGTLDP+ATGLLI+C GK TK +D +
Sbjct: 16 GELLLINKPYKWTSFDVVGKIRNSLKPLKLKVGHAGTLDPLATGLLIICTGKLTKQIDTF 75
Query: 367 QGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSA 426
Q K Y+G LG T ++D ++ V +I ++DI A F G+I Q PP SA
Sbjct: 76 QAEEKEYTGTMILGATTPSFDMETEVDATFDISNISNQDIYNACKPFIGDIEQYPPAHSA 135
Query: 427 IKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCAD 486
+KV GE++Y KAR GE +EL R +S+ +F+I R + + FR+ CSKGTYIRSL +D
Sbjct: 136 VKVNGERLYVKARLGEEVELRKRFVSVPEFEITRI--ELPEIDFRIVCSKGTYIRSLVSD 193
Query: 487 FGKALGSCAHLTALRRDSIGQYSADDAWEFKEL 519
FGK L S A+L+ L R G + +++E EL
Sbjct: 194 FGKQLNSGAYLSKLTRTRSGNFLLANSFEVLEL 226
>gi|365960820|ref|YP_004942387.1| tRNA pseudouridine synthase B [Flavobacterium columnare ATCC 49512]
gi|365737501|gb|AEW86594.1| tRNA pseudouridine synthase B [Flavobacterium columnare ATCC 49512]
Length = 232
Score = 192 bits (487), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 99/225 (44%), Positives = 136/225 (60%), Gaps = 9/225 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVK-------KVGHAGTLDPMATGLLIVCVGKATK 361
G ++L++KP W+SF KL+ ++K + K+GH+GTLDP+ATGLLIVC GK TK
Sbjct: 10 GQILLIDKPLNWSSFQAVNKLKYVLKNRLDLPKKFKIGHSGTLDPLATGLLIVCTGKYTK 69
Query: 362 LVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVP 421
+ G K Y+G +LG T ++D ++PV P HI I + F GEI Q P
Sbjct: 70 KIPELMGQTKEYTGTIQLGATTPSYDLETPVNATFPINHITPVLITETVKQFIGEIEQKP 129
Query: 422 PMFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIR 481
P+FSA+K G+++Y+ AR G IE+ R+ +I++F+I R + + FRV+CSKGTYIR
Sbjct: 130 PVFSALKKEGKRLYEYARTGTEIEIEARKTTIYEFEITRI--ELPEIDFRVSCSKGTYIR 187
Query: 482 SLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAITKN 526
SL D G AL S HLTALRR G +S + A E IT N
Sbjct: 188 SLAHDLGAALESGGHLTALRRTKSGDFSVEKALTPDAFSELITNN 232
>gi|444307781|ref|ZP_21143498.1| tRNA pseudouridine synthase B [Arthrobacter sp. SJCon]
gi|443479900|gb|ELT42878.1| tRNA pseudouridine synthase B [Arthrobacter sp. SJCon]
Length = 305
Score = 192 bits (487), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 96/212 (45%), Positives = 129/212 (60%), Gaps = 4/212 (1%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
++KP+GWTS V G++RRL +KVGHAGTLDPMATG+L+V + KAT+L+ G K Y
Sbjct: 1 MDKPQGWTSHDVVGRMRRLAGTRKVGHAGTLDPMATGVLVVGINKATRLLTYIVGTSKTY 60
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEK 433
+ RLG++T T DA+ V E + D+ I A+ G+I QVP SAIKV GE+
Sbjct: 61 TATIRLGQSTVTDDAEGEVTATAGTEGVSDQAIHDGVAALTGDILQVPSSVSAIKVNGER 120
Query: 434 MYDKARRGESIELSPRRISIFQFDIERSLEDRQ----NLIFRVTCSKGTYIRSLCADFGK 489
Y + R GE ++L+ R ++I +F++ D +L V CS GTYIR+L D G
Sbjct: 121 AYARVRSGEDVKLAARPVTIHRFEVHGIRRDAGAGALDLDVTVECSSGTYIRALARDLGN 180
Query: 490 ALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
ALG HLTALRR +G YS D A +L E
Sbjct: 181 ALGVGGHLTALRRTHVGPYSLDQARTLDQLAE 212
>gi|345516465|ref|ZP_08795956.1| tRNA pseudouridine synthase B [Bacteroides dorei 5_1_36/D4]
gi|345455509|gb|EEO48217.2| tRNA pseudouridine synthase B [Bacteroides dorei 5_1_36/D4]
Length = 241
Score = 191 bits (486), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 99/211 (46%), Positives = 129/211 (61%), Gaps = 6/211 (2%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR----RLVKVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G ++ +KP GWTSF V G +R R + VKK VGHAGTLDP+ATG++IVC GKATK
Sbjct: 8 GEVLCFDKPLGWTSFKVVGHVRYHLCRHLGVKKLKVGHAGTLDPLATGVMIVCTGKATKR 67
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ +Q K Y RLG T ++D + V P EHI + + + F GEIWQ PP
Sbjct: 68 IEEFQYHTKEYVATLRLGATTPSYDLEHEVDATYPTEHITRQLVEETLQKFTGEIWQTPP 127
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRS 482
FSA V GE+ YD ARRGE + L P+ + I + ++ D + RV CSKGTYIR+
Sbjct: 128 AFSACMVNGERAYDLARRGEEVNLRPKLLVIDEIELLDCRLDVPEITIRVVCSKGTYIRA 187
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDA 513
L D G+AL S AHLTALRR +G+ +D
Sbjct: 188 LARDIGEALHSGAHLTALRRTRVGEVRVEDC 218
>gi|220912202|ref|YP_002487511.1| tRNA pseudouridine synthase B [Arthrobacter chlorophenolicus A6]
gi|219859080|gb|ACL39422.1| tRNA pseudouridine synthase B [Arthrobacter chlorophenolicus A6]
Length = 322
Score = 191 bits (486), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 97/230 (42%), Positives = 137/230 (59%), Gaps = 8/230 (3%)
Query: 300 LPPT----WDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVC 355
+PPT G +V+V+KP+GWTS V G++RR+ +KVGHAGTLDPMATG+L+V
Sbjct: 1 MPPTSADILVGVLSGLVIVDKPQGWTSHDVVGRMRRIAGTRKVGHAGTLDPMATGVLVVG 60
Query: 356 VGKATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRG 415
+ KAT+L+ G K Y+ RLG++T T DA+ VI + ++ I A+ G
Sbjct: 61 INKATRLLTYIVGTSKTYTATIRLGQSTVTDDAEGDVIASAGTSAVAEQAIHDGVAALTG 120
Query: 416 EIWQVPPMFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIER----SLEDRQNLIFR 471
I QVP SAIKV GE+ Y + R GE ++L+ R ++I +F++ + D ++
Sbjct: 121 GIEQVPSSVSAIKVNGERAYARVRSGEDVKLAARPVTIHRFEVHAIRRDAGADVIDIDVT 180
Query: 472 VTCSKGTYIRSLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
V CS GTYIR+L D G LG HLTALRR +G YS + A ++L E
Sbjct: 181 VECSSGTYIRALARDLGNGLGVGGHLTALRRTHVGPYSLEQARTLEQLAE 230
>gi|399927100|ref|ZP_10784458.1| tRNA pseudouridine synthase B [Myroides injenensis M09-0166]
Length = 238
Score = 191 bits (486), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 98/223 (43%), Positives = 141/223 (63%), Gaps = 8/223 (3%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVKK------VGHAGTLDPMATGLLIVCVGKATKL 362
G ++L++KP W+SF K++ L+K + VGHAGTLDP+A+GLLIVC GKATK
Sbjct: 12 GQILLIDKPLHWSSFQAVNKIKWLLKKELGLKKIKVGHAGTLDPLASGLLIVCTGKATKQ 71
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
+ QG +K Y+G +G T ++D ++ + Q P +HI D + SF GE Q PP
Sbjct: 72 ISDLQGQVKEYTGTITVGATTPSYDLETEIDQTFPIDHINDILLDNTRKSFLGETQQKPP 131
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRS 482
+FSA+K G+++Y+ AR+GE +E++ R I+I +F++ + D N+ FRV CSKGTYIRS
Sbjct: 132 IFSALKKDGKRLYEHARKGEEVEIALRSITISEFELTKI--DLPNIDFRVICSKGTYIRS 189
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAITK 525
L DFG+ + S HL+ALRR IG Y +A + E I K
Sbjct: 190 LAFDFGQKINSGGHLSALRRTKIGDYDVANAINLDDFEINIKK 232
>gi|325962813|ref|YP_004240719.1| tRNA pseudouridine synthase B [Arthrobacter phenanthrenivorans
Sphe3]
gi|323468900|gb|ADX72585.1| tRNA pseudouridine synthase B [Arthrobacter phenanthrenivorans
Sphe3]
Length = 317
Score = 191 bits (486), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 97/215 (45%), Positives = 133/215 (61%), Gaps = 4/215 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP+GWTS V G++RRL +KVGHAGTLDPMATG+L+V + KAT+L+ G
Sbjct: 5 LVIVDKPQGWTSHDVVGRMRRLAGTRKVGHAGTLDPMATGVLVVGINKATRLLTYIVGTS 64
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y+ RLG++T T DA+ V + ++ I A+ G I QVP SAIKV
Sbjct: 65 KTYTATIRLGQSTVTDDAEGEVTATAGTSGVSEQAIHDGVAALTGNIQQVPSSVSAIKVN 124
Query: 431 GEKMYDKARRGESIELSPRRISIFQFD---IERSLE-DRQNLIFRVTCSKGTYIRSLCAD 486
GE+ Y + R GE + L+ R ++I +F+ I R+ E D ++ V CS GTYIR+L D
Sbjct: 125 GERAYARVRSGEDVTLAARPVTIHRFEVHAIRRNPETDTVDVEVTVECSSGTYIRALARD 184
Query: 487 FGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
G ALG HLTALRR +G YS + A ++L E
Sbjct: 185 LGNALGVGGHLTALRRTHVGPYSLEQARTLEQLAE 219
>gi|228472731|ref|ZP_04057489.1| tRNA pseudouridine synthase B [Capnocytophaga gingivalis ATCC
33624]
gi|228275782|gb|EEK14548.1| tRNA pseudouridine synthase B [Capnocytophaga gingivalis ATCC
33624]
Length = 229
Score = 191 bits (485), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 101/224 (45%), Positives = 133/224 (59%), Gaps = 8/224 (3%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVK------KVGHAGTLDPMATGLLIVCVGKATKL 362
GT +L++KP W+SF KL+ + K K+GHAGTLDP+ATGLLI+C GK TKL
Sbjct: 7 GTTILIDKPLHWSSFQAVNKLKWAIIKKYHLKKFKIGHAGTLDPLATGLLILCTGKHTKL 66
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
+ Q K Y+G LG T ++D ++ + R HI +E I + F G + Q PP
Sbjct: 67 ISSLQDAPKTYTGTIALGATTPSYDLETEIDARFATSHITEELIEQVRMQFTGVLLQAPP 126
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRS 482
+FSAIK G+++Y+ AR+GE E+ R I+I + S E+ L F V CSKGTYIRS
Sbjct: 127 LFSAIKKDGKRLYELARKGEVTEIPEREITIHSLALTPSGEN--TLSFEVHCSKGTYIRS 184
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAITKN 526
L D GKALGS AHLT+LRR IG +S DA E + N
Sbjct: 185 LAHDIGKALGSGAHLTSLRRTQIGNHSVADALSPDAFVELLNTN 228
>gi|373251779|ref|ZP_09539897.1| tRNA pseudouridine synthase B [Nesterenkonia sp. F]
Length = 337
Score = 191 bits (485), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 95/215 (44%), Positives = 136/215 (63%), Gaps = 4/215 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+VLV+KP GWTS V G++R+L +KVGHAGTLDPMATG+L+V + +AT+L+ G+
Sbjct: 16 LVLVDKPAGWTSHDVVGRIRKLAGTRKVGHAGTLDPMATGVLVVGINRATRLLTHIVGVS 75
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y+ RLG +T+T DAD +++ + E +++ A+ GEI QVP SAIKV
Sbjct: 76 KTYTATIRLGRSTTTDDADGELVETRFANAVTSERLQEEIAALTGEIMQVPTTVSAIKVD 135
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDI-ERSLEDRQNLI---FRVTCSKGTYIRSLCAD 486
G + YD+AR GE + L R +++ +FD+ E D LI V S GTY+R+L D
Sbjct: 136 GRRAYDRARSGEDVALEARPVTVHRFDVGETRRIDGGKLIDVDVEVEVSSGTYVRALARD 195
Query: 487 FGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
G+ALG HLTALRR ++G Y ++A ++L E
Sbjct: 196 LGEALGVGGHLTALRRTAVGPYRIENALTLEQLAE 230
>gi|375142692|ref|YP_005003341.1| tRNA pseudouridine 55 synthase [Mycobacterium rhodesiae NBB3]
gi|359823313|gb|AEV76126.1| tRNA pseudouridine 55 synthase [Mycobacterium rhodesiae NBB3]
Length = 305
Score = 191 bits (485), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 99/213 (46%), Positives = 131/213 (61%), Gaps = 2/213 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G TS V G+ RR+ +KVGHAGTLDPMATG+L+V + +ATK++
Sbjct: 18 LVVVDKPAGMTSHDVVGRCRRIFGTRKVGHAGTLDPMATGVLVVGIERATKILGLLTATD 77
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y+ RLG+ TST DA+ V+ + I AAA+ RGEI Q+P SAIKVG
Sbjct: 78 KSYAATIRLGQTTSTEDAEGEVLDTVSAAGVDQTQIESAAAALRGEIDQIPSTVSAIKVG 137
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIE--RSLEDRQNLIFRVTCSKGTYIRSLCADFG 488
G++ Y AR G+S+EL+PR + I +FD+ R D ++ V CS GTYIR+L D G
Sbjct: 138 GQRAYKLAREGQSVELAPRTVRIERFDVRSVRREGDFVDVDVVVDCSSGTYIRALARDVG 197
Query: 489 KALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
ALG HLTALRR +G + D A EL E
Sbjct: 198 AALGVGGHLTALRRTRVGSFGLDQAATLDELTE 230
>gi|429752150|ref|ZP_19285029.1| tRNA pseudouridine synthase B [Capnocytophaga sp. oral taxon 326
str. F0382]
gi|429177841|gb|EKY19145.1| tRNA pseudouridine synthase B [Capnocytophaga sp. oral taxon 326
str. F0382]
Length = 544
Score = 191 bits (485), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 99/221 (44%), Positives = 136/221 (61%), Gaps = 10/221 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR-------RLVKVKKVGHAGTLDPMATGLLIVCVGKATK 361
G ++L++KP W+SF K++ +L K+K +GHAGTLDP+A+GLL++C GK TK
Sbjct: 12 GRILLIDKPLQWSSFQAVNKIKWAILKHYKLKKIK-IGHAGTLDPLASGLLVICTGKFTK 70
Query: 362 LVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVP 421
+ Q +K Y+G LG T ++D ++ + R P +HI E I + F GE+ Q P
Sbjct: 71 KITEIQDAVKTYTGTITLGATTPSYDMETEIDARYPTDHITPELIEQVRKQFMGELVQTP 130
Query: 422 PMFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIR 481
P+FSAIK G+++Y+ AR G+ IE+ R I I F I+ S L F V CSKGTYIR
Sbjct: 131 PVFSAIKKDGKRLYEFARDGKEIEVPQRTIYIHNFTIDAS--QFPELHFEVVCSKGTYIR 188
Query: 482 SLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEA 522
SL DFGKALGS +L+ALRR IG +S DA +E A
Sbjct: 189 SLANDFGKALGSGGYLSALRRTKIGDFSVSDAISPEEFVSA 229
>gi|392965821|ref|ZP_10331240.1| tRNA pseudouridine synthase B [Fibrisoma limi BUZ 3]
gi|387844885|emb|CCH53286.1| tRNA pseudouridine synthase B [Fibrisoma limi BUZ 3]
Length = 230
Score = 191 bits (485), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 99/207 (47%), Positives = 134/207 (64%), Gaps = 5/207 (2%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQG 368
G ++L++KP WTSF V KLRR K KK+GHAGTLDP+ATGLLI+C GK TK +D+YQ
Sbjct: 10 GQLILIDKPLEWTSFDVVNKLRRACKFKKIGHAGTLDPLATGLLILCTGKMTKQIDQYQA 69
Query: 369 MIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
K Y+G LG+ T + D ++ I E I+ AA GEI Q+PP++SAI+
Sbjct: 70 QEKEYTGTLVLGKTTPSVDLETAFDGEFDVSGITPEQIQAAARQLTGEIQQIPPIYSAIR 129
Query: 429 VGGEKMYDKARRGESI-ELSPRRISIFQFDIERSLEDRQNLI-FRVTCSKGTYIRSLCAD 486
V GE++Y+KARRGE+ ++ R +++ F++ L D I FR+ CSKGTYIRSL D
Sbjct: 130 VNGERLYEKARRGETASDIKSRLVTVSNFNV---LTDGFPAIDFRIVCSKGTYIRSLVRD 186
Query: 487 FGKALGSCAHLTALRRDSIGQYSADDA 513
G LG+ A+L LRR IG++ DA
Sbjct: 187 LGLLLGNGAYLANLRRTRIGEFVVKDA 213
>gi|429756092|ref|ZP_19288704.1| tRNA pseudouridine synthase B [Capnocytophaga sp. oral taxon 324
str. F0483]
gi|429172034|gb|EKY13617.1| tRNA pseudouridine synthase B [Capnocytophaga sp. oral taxon 324
str. F0483]
Length = 558
Score = 191 bits (485), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 96/212 (45%), Positives = 135/212 (63%), Gaps = 8/212 (3%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR----RLVKVKKV--GHAGTLDPMATGLLIVCVGKATKL 362
G ++L++KP W+SF K++ R K+KK+ GHAGTLDP+A+GLL++C GK TK
Sbjct: 10 GRILLIDKPLQWSSFQAVNKIKWAILRHYKLKKIKIGHAGTLDPLASGLLVICTGKFTKK 69
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
+ Q +K Y+G +G T ++D ++ + P +HI E I + F GE+ Q PP
Sbjct: 70 ITEIQDAVKTYTGTITVGATTPSYDKETEINAHYPTDHITPELIEQVRMQFIGELTQTPP 129
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRS 482
+FSAIK G+++Y+ AR G+ IE+ R I I F+I+ SL + L F V CSKGTYIRS
Sbjct: 130 VFSAIKKEGKRLYEFARDGKEIEVPQRTIYIHSFNIDASLFPK--LHFEVVCSKGTYIRS 187
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDAW 514
L DFGK LGS +L+ALRR IG +S +DA
Sbjct: 188 LANDFGKVLGSGGYLSALRRTKIGDFSVNDAL 219
>gi|340627793|ref|YP_004746245.1| putative tRNA pseudouridine synthase B TRUB [Mycobacterium canettii
CIPT 140010059]
gi|433627908|ref|YP_007261537.1| tRNA pseudouridine synthase B [Mycobacterium canettii CIPT
140060008]
gi|433642977|ref|YP_007288736.1| tRNA pseudouridine synthase B [Mycobacterium canettii CIPT
140070008]
gi|340005983|emb|CCC45150.1| putative tRNA pseudouridine synthase B TRUB (tRNA pseudouridine 55
synthase) (PSI55 synthase) (pseudouridylate synthase)
(uracil hydrolyase) [Mycobacterium canettii CIPT
140010059]
gi|432155514|emb|CCK52764.1| tRNA pseudouridine synthase B [Mycobacterium canettii CIPT
140060008]
gi|432159525|emb|CCK56833.1| tRNA pseudouridine synthase B [Mycobacterium canettii CIPT
140070008]
Length = 296
Score = 191 bits (485), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 94/212 (44%), Positives = 131/212 (61%), Gaps = 3/212 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G TS V G+ RR+ ++VGHAGTLDPMATG+L++ + +ATK++
Sbjct: 8 IVVVDKPAGMTSHDVVGRCRRIFSTRRVGHAGTLDPMATGVLVIGIERATKILGLLTAAS 67
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y+ RLG+ TST DA+ V+Q P EH+ E I A A RGEI QVP SA+KVG
Sbjct: 68 KSYAATIRLGQTTSTEDAEGQVLQSVPAEHLTVEAIEAAMAGLRGEIRQVPSAVSAVKVG 127
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLI---FRVTCSKGTYIRSLCADF 487
G + Y AR G+++EL R + I +F++ R ++ V CS GTYIR+L D
Sbjct: 128 GRRAYRLAREGQAVELQARPVRIERFELVRMRRAAAGIVDLDVEVDCSSGTYIRALARDL 187
Query: 488 GKALGSCAHLTALRRDSIGQYSADDAWEFKEL 519
G ALG H+TALRR +G+++ D A +L
Sbjct: 188 GDALGVGGHVTALRRIRVGRFALDQAVTLDDL 219
>gi|433631889|ref|YP_007265517.1| tRNA pseudouridine synthase B [Mycobacterium canettii CIPT
140070010]
gi|432163482|emb|CCK60892.1| tRNA pseudouridine synthase B [Mycobacterium canettii CIPT
140070010]
Length = 299
Score = 191 bits (484), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 94/212 (44%), Positives = 131/212 (61%), Gaps = 3/212 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G TS V G+ RR+ ++VGHAGTLDPMATG+L++ + +ATK++
Sbjct: 8 IVVVDKPAGMTSHDVVGRCRRIFSTRRVGHAGTLDPMATGVLVIGIERATKILGLLTAAS 67
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y+ RLG+ TST DA+ V+Q P EH+ E I A A RGEI QVP SA+KVG
Sbjct: 68 KSYAATIRLGQTTSTEDAEGQVLQSVPAEHLTVEAIEAAMAGLRGEIRQVPSAVSAVKVG 127
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLI---FRVTCSKGTYIRSLCADF 487
G + Y AR G+++EL R + I +F++ R ++ V CS GTYIR+L D
Sbjct: 128 GRRAYRLAREGQAVELQARPVRIERFELVRMRRAAAGIVDLDVEVDCSSGTYIRALARDL 187
Query: 488 GKALGSCAHLTALRRDSIGQYSADDAWEFKEL 519
G ALG H+TALRR +G+++ D A +L
Sbjct: 188 GDALGVGGHVTALRRIRVGRFALDQAVTLDDL 219
>gi|260061585|ref|YP_003194665.1| tRNA pseudouridine synthase [Robiginitalea biformata HTCC2501]
gi|88785717|gb|EAR16886.1| putative tRNA pseudouridine synthase [Robiginitalea biformata
HTCC2501]
Length = 236
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 103/226 (45%), Positives = 143/226 (63%), Gaps = 8/226 (3%)
Query: 309 GTMVLVNKPKGWTSF----TVCGKLRRLVKVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G ++L++KP W+SF V LRR +KK VGHAGTLDP+ATGLL++C GKATK
Sbjct: 11 GQVLLIDKPYEWSSFQALNAVKWTLRRAFSLKKIKVGHAGTLDPLATGLLLICTGKATKQ 70
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
+ QG+ K Y+G RLG T+++D ++P P EHI E + +A +F GEI Q PP
Sbjct: 71 IAGLQGLPKEYTGTIRLGAVTASYDLETPPEGTYPTEHITPEALLEATRAFTGEIRQQPP 130
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRS 482
+FSAIK G+++Y+ AR+G+ +++ R + I F++ R + FRVTCSKGTYIRS
Sbjct: 131 VFSAIKKDGKRLYEYARKGQQVDIPTRVVRIDAFELTRIALPEVD--FRVTCSKGTYIRS 188
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAITKNYF 528
L DFG+ LGS A+L+AL+R G YS + A EA + F
Sbjct: 189 LAHDFGQFLGSGAYLSALKRTKTGPYSVNKAHTPDAFREAFREKGF 234
>gi|256820799|ref|YP_003142078.1| tRNA pseudouridine synthase B [Capnocytophaga ochracea DSM 7271]
gi|256582382|gb|ACU93517.1| tRNA pseudouridine synthase B [Capnocytophaga ochracea DSM 7271]
Length = 558
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 95/213 (44%), Positives = 135/213 (63%), Gaps = 10/213 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR-------RLVKVKKVGHAGTLDPMATGLLIVCVGKATK 361
G ++L++KP W+SF K++ +L K+K +GHAGTLDP+A+GLL++C GK TK
Sbjct: 10 GRILLIDKPLQWSSFQAVNKIKWAILKHYKLKKIK-IGHAGTLDPLASGLLVICTGKFTK 68
Query: 362 LVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVP 421
+ Q +K Y+G +G T ++D ++ + P +HI E I + F GE+ Q P
Sbjct: 69 KITEIQDAVKTYTGTITVGATTPSYDKETEINAHYPTDHITPELIEQVRMQFIGELTQTP 128
Query: 422 PMFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIR 481
P+FSAIK G+++Y+ AR G+ IE+ R I I+ F+I+ S L F V CSKGTYIR
Sbjct: 129 PVFSAIKKEGKRLYEFARDGKEIEVPQRTIYIYSFNIDAS--QFPKLQFEVVCSKGTYIR 186
Query: 482 SLCADFGKALGSCAHLTALRRDSIGQYSADDAW 514
SL DFGKALGS +L+ALRR IG +S +DA
Sbjct: 187 SLANDFGKALGSGGYLSALRRTKIGDFSVNDAL 219
>gi|383782126|ref|YP_005466693.1| putative tRNA pseudouridine synthase [Actinoplanes missouriensis
431]
gi|381375359|dbj|BAL92177.1| putative tRNA pseudouridine synthase [Actinoplanes missouriensis
431]
Length = 293
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 97/214 (45%), Positives = 136/214 (63%), Gaps = 4/214 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++V+KP G TS V ++RRL K ++VGH GTLDPMATG+LI+ V +AT+L+ G
Sbjct: 6 LIVVDKPAGMTSHDVVARIRRLAKTRRVGHGGTLDPMATGVLIIGVNRATRLLTYVIGAS 65
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y+G RLG++T T DA+ + + P HI D+ I ++ + GEI QVP SAIK+
Sbjct: 66 KSYAGTIRLGQSTITDDAEGEITAQTPAGHIDDDAINESLRTQLGEIDQVPSAVSAIKIK 125
Query: 431 GEKMYDKARRGESIELSPRRISIFQ---FDIERSLEDRQNLIFRVTCSKGTYIRSLCADF 487
G + Y + R GE + L RRI+I + DI RS D ++ VTCS GTYIR++ D
Sbjct: 126 GVRSYKRVRDGEEVSLPARRITISRLEVLDIRRS-GDVIDVDIDVTCSSGTYIRAIARDL 184
Query: 488 GKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
G ALG HLTALRR ++G+ + D A ++LEE
Sbjct: 185 GAALGVGGHLTALRRTAVGEMTLDAAATLEQLEE 218
>gi|119964316|ref|YP_947332.1| tRNA pseudouridine synthase B [Arthrobacter aurescens TC1]
gi|189030154|sp|A1R520.1|TRUB_ARTAT RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|119951175|gb|ABM10086.1| tRNA pseudouridine synthase B [Arthrobacter aurescens TC1]
Length = 311
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 96/207 (46%), Positives = 128/207 (61%), Gaps = 4/207 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP+GWTS V G++RRL +KVGHAGTLDPMATG+L++ + KAT+L+ G
Sbjct: 5 LVIVDKPQGWTSHDVVGRMRRLAGTRKVGHAGTLDPMATGVLVLGINKATRLLTYIVGTS 64
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y+ RLGE T T DA+ V + HI D+ + A+ G I QVP SAIKV
Sbjct: 65 KTYTATIRLGETTITDDAEGEVTEARTAAHITDDAVAVGVAALTGPIQQVPSSVSAIKVN 124
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLE-DRQNLI---FRVTCSKGTYIRSLCAD 486
GE+ Y + R GE ++L+ R ++I +FD+ D ++ V CS GTYIR+L D
Sbjct: 125 GERSYARVRSGEEVKLAARPVTIHRFDVHSITRIDGGRVVDVDVTVECSSGTYIRALARD 184
Query: 487 FGKALGSCAHLTALRRDSIGQYSADDA 513
G ALG HLTALRR +G YS D A
Sbjct: 185 LGNALGIGGHLTALRRTQVGPYSLDQA 211
>gi|315223942|ref|ZP_07865787.1| tRNA pseudouridine synthase B [Capnocytophaga ochracea F0287]
gi|420158760|ref|ZP_14665574.1| tRNA pseudouridine(55) synthase [Capnocytophaga ochracea str. Holt
25]
gi|314946114|gb|EFS98118.1| tRNA pseudouridine synthase B [Capnocytophaga ochracea F0287]
gi|394763247|gb|EJF45367.1| tRNA pseudouridine(55) synthase [Capnocytophaga ochracea str. Holt
25]
Length = 559
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 96/213 (45%), Positives = 134/213 (62%), Gaps = 10/213 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR-------RLVKVKKVGHAGTLDPMATGLLIVCVGKATK 361
G ++L++KP W+SF K++ +L K+K +GHAGTLDP+A+GLL++C GK TK
Sbjct: 10 GRILLIDKPLQWSSFQAVNKIKWAILKHYKLKKIK-IGHAGTLDPLASGLLVICTGKFTK 68
Query: 362 LVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVP 421
+ Q +K Y+G +G T ++D ++ + P +HI E I + F GE+ Q P
Sbjct: 69 KITEIQDTVKTYTGTITVGATTPSYDKETEIDAHYPTDHITPELIEQVRMQFIGELVQTP 128
Query: 422 PMFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIR 481
P+FSAIK G+++Y+ AR G+ IE+ R I I FDI+ S L F V CSKGTYIR
Sbjct: 129 PVFSAIKKEGKRLYEFARDGKEIEVPQRTIYIHSFDIDAS--QFPKLHFEVVCSKGTYIR 186
Query: 482 SLCADFGKALGSCAHLTALRRDSIGQYSADDAW 514
SL DFGKALGS +L+ALRR IG +S +DA
Sbjct: 187 SLANDFGKALGSGGYLSALRRTKIGDFSVNDAL 219
>gi|313203717|ref|YP_004042374.1| tRNA pseudouridine synthase b [Paludibacter propionicigenes WB4]
gi|312443033|gb|ADQ79389.1| tRNA pseudouridine synthase B [Paludibacter propionicigenes WB4]
Length = 234
Score = 190 bits (483), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 102/224 (45%), Positives = 140/224 (62%), Gaps = 10/224 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR----RLVKVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G ++ V KP WTSF + K+R + +K+KK VGHAGTLDP+ATG++I+C GK+TKL
Sbjct: 6 GEVLHVAKPLTWTSFNLVSKVRWKLQKTLKMKKLKVGHAGTLDPLATGVMIICTGKSTKL 65
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ +Q K Y LG T ++D + PV P EHI + + F GEIWQVPP
Sbjct: 66 IESFQYQTKEYIATLELGATTPSFDLELPVDATFPTEHITRALVDEVIPRFLGEIWQVPP 125
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDI-ERSLEDRQNLIFRVTCSKGTYIR 481
++SA+KV G++ YD AR G+ +EL P+ + I + +I + +L L RV CSKGTYIR
Sbjct: 126 VYSAVKVDGKRAYDYAREGQEVELKPKLLVIDEIEILDFAL---PVLKIRVVCSKGTYIR 182
Query: 482 SLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAITK 525
+L D G ALGS AHLTAL R IG +D W+ +L E + K
Sbjct: 183 ALARDIGLALGSGAHLTALERTRIGDIKLNDCWQIDDLVEFLDK 226
>gi|393779618|ref|ZP_10367856.1| tRNA pseudouridine(55) synthase [Capnocytophaga sp. oral taxon 412
str. F0487]
gi|392609938|gb|EIW92733.1| tRNA pseudouridine(55) synthase [Capnocytophaga sp. oral taxon 412
str. F0487]
Length = 558
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 96/213 (45%), Positives = 134/213 (62%), Gaps = 10/213 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR-------RLVKVKKVGHAGTLDPMATGLLIVCVGKATK 361
G ++L++KP W+SF K++ +L K+K +GHAGTLDP+A+GLL++C GK TK
Sbjct: 10 GRILLIDKPLQWSSFQAVNKIKWAILKHYKLKKIK-IGHAGTLDPLASGLLVICTGKFTK 68
Query: 362 LVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVP 421
+ Q +K Y+G +G T ++D ++ + P +HI E I + F GE+ Q P
Sbjct: 69 KITEIQDTVKTYTGTITVGATTPSYDKETKIDAHYPTDHITPELIEEVRMQFIGELTQTP 128
Query: 422 PMFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIR 481
P+FSAIK G+++Y+ AR G+ IE+ R I I FDI+ S L F V CSKGTYIR
Sbjct: 129 PVFSAIKKEGKRLYEFARDGKEIEVPQRTIYIHTFDIDAS--QFPKLHFEVVCSKGTYIR 186
Query: 482 SLCADFGKALGSCAHLTALRRDSIGQYSADDAW 514
SL DFGKALGS +L+ALRR IG +S +DA
Sbjct: 187 SLANDFGKALGSGGYLSALRRTKIGDFSVNDAL 219
>gi|393785925|ref|ZP_10374069.1| tRNA pseudouridine synthase B [Bacteroides nordii CL02T12C05]
gi|392661039|gb|EIY54636.1| tRNA pseudouridine synthase B [Bacteroides nordii CL02T12C05]
Length = 237
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 97/213 (45%), Positives = 133/213 (62%), Gaps = 6/213 (2%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR----RLVKVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G ++ NKP GWTSF V G +R R +KVKK VGHAGTLDP+ATG++IVC GKATK
Sbjct: 6 GEVLFFNKPLGWTSFKVVGHIRYHICRRMKVKKLKVGHAGTLDPLATGVMIVCTGKATKR 65
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ +Q K Y +LG T ++D + + P EHI E I +A F GEI Q+PP
Sbjct: 66 IEEFQYHTKEYIATIQLGATTPSYDLEHEIDATYPTEHITREKIEEALKQFLGEIQQIPP 125
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRS 482
FSA KV G + YD AR+G+ +EL P+ ++I + ++ ++ + RV CSKGTYIR+
Sbjct: 126 AFSACKVDGARAYDLARKGQEVELKPKLLAIDEIELLACDLEKMEIKIRVVCSKGTYIRA 185
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDAWE 515
L D G+AL S AHLT L R +G+ +D +
Sbjct: 186 LARDIGEALHSGAHLTGLVRTRVGEVRLEDCLD 218
>gi|413942366|gb|AFW75015.1| hypothetical protein ZEAMMB73_733647 [Zea mays]
Length = 126
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 87/100 (87%), Positives = 93/100 (93%)
Query: 429 VGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFG 488
VGGEKMYDKAR+GE++ELSPRRISI+QFDIERSLEDRQNLIFRVTCSKGTYIRSLCAD G
Sbjct: 27 VGGEKMYDKARKGETVELSPRRISIYQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADLG 86
Query: 489 KALGSCAHLTALRRDSIGQYSADDAWEFKELEEAITKNYF 528
KALGSCAHLTALRRDSIG+YS +DAW F ELEE ITK Y
Sbjct: 87 KALGSCAHLTALRRDSIGEYSVNDAWNFDELEEQITKGYL 126
>gi|118472061|ref|YP_886986.1| tRNA pseudouridine synthase B [Mycobacterium smegmatis str. MC2
155]
gi|399987000|ref|YP_006567349.1| tRNA pseudouridine synthase B [Mycobacterium smegmatis str. MC2
155]
gi|118173348|gb|ABK74244.1| tRNA pseudouridine synthase B [Mycobacterium smegmatis str. MC2
155]
gi|399231561|gb|AFP39054.1| tRNA pseudouridine synthase B [Mycobacterium smegmatis str. MC2
155]
Length = 303
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 99/219 (45%), Positives = 134/219 (61%), Gaps = 11/219 (5%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G TS V G+ RRL +KVGHAGTLDPMATG+L++ + +ATK++
Sbjct: 13 LVIVDKPAGMTSHDVVGRCRRLFGTRKVGHAGTLDPMATGVLVIGIERATKILGLLTATD 72
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y+ RLG T+T DA+ V++ P + DE I A A RG+I QVP SAIKVG
Sbjct: 73 KSYAATIRLGRTTTTEDAEGEVVEDVPARRVTDEQIHAAVADLRGDIEQVPSAVSAIKVG 132
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQ--------NLIFRVTCSKGTYIRS 482
G++ Y AR G+S+EL+ R + I +FD+ L+ R+ ++ V CS GTYIR+
Sbjct: 133 GQRAYKLAREGQSVELAARPVRIDRFDV---LDIRRPDDFPDFVDVDVEVDCSSGTYIRA 189
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
L D G ALG HLT LRR +G+Y D+A EL E
Sbjct: 190 LARDVGAALGVGGHLTVLRRTRVGRYGLDEAHTLDELAE 228
>gi|149371948|ref|ZP_01891267.1| pseudouridylate synthase (pseudouridine synthase) [unidentified
eubacterium SCB49]
gi|149355088|gb|EDM43649.1| pseudouridylate synthase (pseudouridine synthase) [unidentified
eubacterium SCB49]
Length = 235
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 100/221 (45%), Positives = 138/221 (62%), Gaps = 8/221 (3%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVKK------VGHAGTLDPMATGLLIVCVGKATKL 362
G ++L++KP WTSF V K+R L+K + VGHAGTLDP+ATGLLI+C GK TK
Sbjct: 13 GQVILIDKPLNWTSFQVVNKVRWLIKQQFKIKKIKVGHAGTLDPLATGLLILCTGKFTKQ 72
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ YQ K Y+G LG T ++D ++ + I + I + F GEI Q PP
Sbjct: 73 IETYQAQHKEYTGTITLGATTPSYDLETEIDNTFDILEINEAQILENTKQFVGEIDQRPP 132
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRS 482
+FSA+K G+++Y+ AR GE++E+ R+I+I +FDI D + FRV CSKGTYIRS
Sbjct: 133 VFSALKKEGKRLYEYARAGETVEVPTRKITISEFDITSI--DMPDAHFRVACSKGTYIRS 190
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
L DFG L + AHL+ALRR IG +S D+A + E+ I
Sbjct: 191 LAHDFGATLNNGAHLSALRRTKIGDFSVDNAISIEAFEDLI 231
>gi|386818877|ref|ZP_10106093.1| tRNA pseudouridine 55 synthase [Joostella marina DSM 19592]
gi|386423983|gb|EIJ37813.1| tRNA pseudouridine 55 synthase [Joostella marina DSM 19592]
Length = 231
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 98/211 (46%), Positives = 137/211 (64%), Gaps = 8/211 (3%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVKK------VGHAGTLDPMATGLLIVCVGKATKL 362
G ++L++KP W+SF K++ +K K VGHAGTLDP+ATGLLI+C GK TK
Sbjct: 11 GQILLIDKPLTWSSFQAVNKIKWAIKKKFGLKKIKVGHAGTLDPLATGLLIICTGKFTKK 70
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
+ QG IK Y+G LG ++D ++ V Q P EHI +E I++A +F GEI Q PP
Sbjct: 71 IPELQGQIKEYTGTITLGATRPSYDMETEVDQVFPIEHISEEKIKEATKNFIGEIDQFPP 130
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRS 482
+FSA+K G+++Y+ AR G +E+ R+I+I F+I + + + FRV CSKGTYIRS
Sbjct: 131 VFSALKKDGKRLYEYAREGVEVEIKSRKITIEAFEI--TAINLPEVAFRVVCSKGTYIRS 188
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDA 513
L DFGKAL S +L+ LRR IG ++ D+A
Sbjct: 189 LAHDFGKALNSGGYLSVLRRTKIGDFNVDNA 219
>gi|294055323|ref|YP_003548981.1| tRNA pseudouridine synthase B [Coraliomargarita akajimensis DSM
45221]
gi|293614656|gb|ADE54811.1| tRNA pseudouridine synthase B [Coraliomargarita akajimensis DSM
45221]
Length = 238
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 97/218 (44%), Positives = 139/218 (63%), Gaps = 3/218 (1%)
Query: 305 DGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVD 364
D P G ++LV+KP+G TS V ++RR+ ++KKVGHAGTLDPMATGL+I+ VGKATK+
Sbjct: 3 DAPEG-ILLVDKPQGITSHDVVDRVRRIFRMKKVGHAGTLDPMATGLMIILVGKATKVSQ 61
Query: 365 RYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMF 424
M K Y+ +LGE T + DAD V+ + + +E +R +F G+ +Q PPMF
Sbjct: 62 YMMSMDKEYTATMKLGEETDSQDADGEVLVTKEVPDLTEEQVRAEMKTFLGDQYQTPPMF 121
Query: 425 SAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLC 484
SA KV G+ +Y AR+G+++ PR I+I +FD+ D + F V CSKG YIR++
Sbjct: 122 SAKKVNGQPLYKLARKGKTVAREPRVINISKFDLTNF--DLPEVSFIVGCSKGAYIRTIA 179
Query: 485 ADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEA 522
D G+ +G AHL LRR IG++ + A +EL+EA
Sbjct: 180 HDLGQKIGCGAHLNVLRRTGIGKFRIEKADTLEELKEA 217
>gi|381187092|ref|ZP_09894657.1| tRNA pseudouridine synthase B [Flavobacterium frigoris PS1]
gi|379650702|gb|EIA09272.1| tRNA pseudouridine synthase B [Flavobacterium frigoris PS1]
Length = 232
Score = 189 bits (480), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 98/225 (43%), Positives = 138/225 (61%), Gaps = 9/225 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRR-------LVKVKKVGHAGTLDPMATGLLIVCVGKATK 361
G ++L++KP W+SF KL+ L K K+GHAGTLDP+ATGLL+VC GK TK
Sbjct: 9 GQILLIDKPLKWSSFQAVNKLKYALINNLGLPKKFKIGHAGTLDPLATGLLLVCTGKFTK 68
Query: 362 LVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVP 421
+ QG K Y+G F +G T ++D ++ V Q HI D I + F GEI Q P
Sbjct: 69 RITELQGQAKEYTGTFFIGATTPSYDLETEVDQTFVTAHIDDALIHETVKQFLGEIDQKP 128
Query: 422 PMFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIR 481
P++SAIK G ++Y+ AR G ++E++ R+ +I +F+I R + FRV CSKGTYIR
Sbjct: 129 PIYSAIKKEGVRLYEHARAGNTVEIASRKTTIHEFEITRIALPEID--FRVVCSKGTYIR 186
Query: 482 SLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAITKN 526
SL DFG A+ S +HLT LRR IG Y+ DA + + E+++ +
Sbjct: 187 SLAFDFGLAMNSGSHLTVLRRTKIGDYNVTDAVDVELFEQSLINH 231
>gi|150026387|ref|YP_001297213.1| tRNA pseudouridine synthase B [Flavobacterium psychrophilum
JIP02/86]
gi|149772928|emb|CAL44412.1| tRNA pseudouridine synthase B [Flavobacterium psychrophilum
JIP02/86]
Length = 234
Score = 189 bits (480), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 100/223 (44%), Positives = 132/223 (59%), Gaps = 9/223 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRR-------LVKVKKVGHAGTLDPMATGLLIVCVGKATK 361
G ++L++KP W+SF KL+ L K K+GHAGTLDP+ATGLLIVC GK TK
Sbjct: 9 GQVLLIDKPLKWSSFQAVNKLKYSLINKLGLPKKFKIGHAGTLDPLATGLLIVCTGKLTK 68
Query: 362 LVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVP 421
+ QG K Y+G F +G T ++D ++ + P HI + I + F GEI Q P
Sbjct: 69 SISEIQGQAKEYTGTFYIGATTPSYDLETQIDATFPIAHITEALIHETVKQFLGEIDQKP 128
Query: 422 PMFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIR 481
P+FSAIK G ++Y+ AR G +E++ R+ I++F+I R + FRV CSKGTYIR
Sbjct: 129 PVFSAIKKDGVRLYEHARAGVEVEIASRKTQIYEFEITRIALPEID--FRVVCSKGTYIR 186
Query: 482 SLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAIT 524
SL DFG AL S AHLT LRR IG Y A + +E I
Sbjct: 187 SLAYDFGLALQSGAHLTVLRRTKIGNYDVKKAIDVTLFDELIV 229
>gi|420149011|ref|ZP_14656194.1| tRNA pseudouridine(55) synthase [Capnocytophaga sp. oral taxon 335
str. F0486]
gi|394754320|gb|EJF37735.1| tRNA pseudouridine(55) synthase [Capnocytophaga sp. oral taxon 335
str. F0486]
Length = 558
Score = 189 bits (480), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 96/212 (45%), Positives = 135/212 (63%), Gaps = 8/212 (3%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR----RLVKVKKV--GHAGTLDPMATGLLIVCVGKATKL 362
G ++L++KP W+SF K++ R K+KK+ GHAGTLDP+A+GLL++C GK TK
Sbjct: 10 GRILLIDKPLQWSSFQAVNKIKWAILRHYKLKKIKIGHAGTLDPLASGLLVICTGKFTKK 69
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
+ Q +K Y+G +G T ++D ++ + P +HI E I + F GE+ Q PP
Sbjct: 70 ITEIQDAVKTYTGTITVGATTPSYDKETEIDAHYPTDHITPELIEQVRMQFVGELVQTPP 129
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRS 482
+FSAIK G+++Y+ AR G+ IE+ R I I F+I+ SL + L F V CSKGTYIRS
Sbjct: 130 VFSAIKKEGKRLYEFARDGKEIEVPQRTIYIHSFNIDASLFPK--LHFEVVCSKGTYIRS 187
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDAW 514
L DFGKAL S +L+ALRR IG +S +DA
Sbjct: 188 LANDFGKALESGGYLSALRRTKIGDFSVNDAL 219
>gi|419716874|ref|ZP_14244269.1| tRNA pseudouridine synthase B [Mycobacterium abscessus M94]
gi|382940435|gb|EIC64759.1| tRNA pseudouridine synthase B [Mycobacterium abscessus M94]
Length = 298
Score = 189 bits (480), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 97/217 (44%), Positives = 133/217 (61%), Gaps = 3/217 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G TS V + RR+ +KVGHAGTLDPMATG+L++ + +ATK++
Sbjct: 10 LVIVDKPAGMTSHDVVSRCRRIFSTRKVGHAGTLDPMATGVLVIGIERATKIMGLLTLTT 69
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y+ R G++TST DA+ V+Q H+ + DI A A RG+I QVP SAIKV
Sbjct: 70 KSYAATIRFGQSTSTDDAEGEVLQTISASHLTEVDIEAAVAGLRGDIAQVPSSVSAIKVD 129
Query: 431 GEKMYDKARRGESIELSPRRISIFQFD---IERSLEDRQNLIFRVTCSKGTYIRSLCADF 487
G++ Y AR G+S+EL+ R + I +FD + S ED ++ V CS GTYIR+L D
Sbjct: 130 GQRAYKLAREGQSVELAARPVRISRFDVLAVRGSGEDLIDVDVEVDCSSGTYIRALARDA 189
Query: 488 GKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAIT 524
G ALG HLTALRR +G + D A +EL + T
Sbjct: 190 GAALGVGGHLTALRRTRVGDFGLDRARTLEELADGAT 226
>gi|429750459|ref|ZP_19283503.1| tRNA pseudouridine synthase B [Capnocytophaga sp. oral taxon 332
str. F0381]
gi|429165042|gb|EKY07120.1| tRNA pseudouridine synthase B [Capnocytophaga sp. oral taxon 332
str. F0381]
Length = 499
Score = 189 bits (480), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 98/221 (44%), Positives = 135/221 (61%), Gaps = 10/221 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR-------RLVKVKKVGHAGTLDPMATGLLIVCVGKATK 361
G ++L++KP W+SF K++ +L K+K +GHAGTLDP+A+GLL++C GK TK
Sbjct: 10 GRIILIDKPLHWSSFQAVNKIKWAIIKHYKLKKIK-IGHAGTLDPLASGLLVLCTGKYTK 68
Query: 362 LVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVP 421
+ Q K Y+G LG T ++D ++ V P HI E I + F GE+ Q P
Sbjct: 69 KITEIQDATKTYTGTITLGATTPSYDMETEVDTHYPTAHITPEMIEEVRQQFTGELLQTP 128
Query: 422 PMFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIR 481
P+FSAIK G+++Y+ AR GE +E+ R I I F+I+ + + L F VTCSKGTYIR
Sbjct: 129 PVFSAIKKEGKRLYEFAREGEVVEVPQRTIYIHNFEIDAT--NFPELHFEVTCSKGTYIR 186
Query: 482 SLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEA 522
SL DFGKALG+ +L+ALRR IG Y +DA EA
Sbjct: 187 SLANDFGKALGTGGYLSALRRTRIGDYKVEDALSPDAFVEA 227
>gi|284108779|ref|ZP_06386444.1| tRNA pseudouridine synthase B [Candidatus Poribacteria sp. WGA-A3]
gi|283829853|gb|EFC34144.1| tRNA pseudouridine synthase B [Candidatus Poribacteria sp. WGA-A3]
Length = 325
Score = 189 bits (480), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 100/230 (43%), Positives = 141/230 (61%), Gaps = 6/230 (2%)
Query: 293 IVSRSTELPP---TWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMAT 349
+ R LPP T P G + V+KP GWTS V K+RRL++V KVGHAGTLDP AT
Sbjct: 1 MAERLDRLPPGHMTPAVPHGVLN-VSKPAGWTSHDVVAKVRRLLQVPKVGHAGTLDPAAT 59
Query: 350 GLLIVCVGKATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKA 409
G+L V +GK T+L K Y V RLG+ T+T DA +++ P ++ E + +A
Sbjct: 60 GVLPVLLGKGTRLSAFLLHWDKEYEAVLRLGQETTTQDATGAIVRDCPVPELRPETVHEA 119
Query: 410 AASFRGEIWQVPPMFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLI 469
A F GE QVPPM+SA+K+GG+ +Y AR G++++ R ++I+ +I R+L ++
Sbjct: 120 VAQFHGEQQQVPPMYSAVKIGGQPLYKAARAGKTLDRPSRPVTIYHIEI-RALA-LPDVT 177
Query: 470 FRVTCSKGTYIRSLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKEL 519
RV CSKGTYIR+LCAD G+ LG HL+ L R +G + D AW ++
Sbjct: 178 LRVRCSKGTYIRTLCADIGRVLGVGGHLSRLIRSRVGPFHLDRAWSLDDI 227
>gi|409124293|ref|ZP_11223688.1| tRNA pseudouridine synthase B [Gillisia sp. CBA3202]
Length = 233
Score = 189 bits (480), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 103/221 (46%), Positives = 144/221 (65%), Gaps = 8/221 (3%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLV------KVKKVGHAGTLDPMATGLLIVCVGKATKL 362
G ++L +KP GWTSF V K+R L+ K KVGHAGTLDP+A+GLLI+C GK TK
Sbjct: 14 GQILLFDKPLGWTSFQVVNKVRWLIRKSCGIKKIKVGHAGTLDPLASGLLIICTGKFTKR 73
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ QG K Y+G F LG T ++D ++ + + HI + I +A +F GEI Q PP
Sbjct: 74 IEELQGQEKEYTGTFTLGGTTPSYDLETEIDETFETSHISEAAIHEATKNFLGEISQFPP 133
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRS 482
+FSA+K G+++Y+ AR GE +E+ R+++I F+I + N+ FRVTCSKGTYIRS
Sbjct: 134 VFSALKKDGKRLYEYARNGEDVEIPSRKVTISTFEITNI--EMPNVDFRVTCSKGTYIRS 191
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
L DFGKAL S AHL+ALRR IG ++ D+ + E+ +
Sbjct: 192 LAHDFGKALNSGAHLSALRRTKIGTFNVVDSLDIASFEKLL 232
>gi|310778247|ref|YP_003966580.1| tRNA pseudouridine synthase B [Ilyobacter polytropus DSM 2926]
gi|309747570|gb|ADO82232.1| tRNA pseudouridine synthase B [Ilyobacter polytropus DSM 2926]
Length = 286
Score = 189 bits (479), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 92/215 (42%), Positives = 142/215 (66%), Gaps = 3/215 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ ++K G TSF V +L+R++K+KK+GH GTLDPMATG+L++C G+AT+L +G
Sbjct: 4 IINIDKSSGMTSFDVVRRLKRILKMKKIGHTGTLDPMATGILVICTGRATRLAQDIEGQR 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y F LG T+T+D + + R + K E++ KA +FRGEI Q+PPM+SA+KV
Sbjct: 64 KTYIAGFELGYKTTTYDTEGEITHRTD-KGAKREELEKALENFRGEIDQIPPMYSALKVN 122
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKA 490
G+++Y+ AR G+ +E RR++I +I + R+ F T SKGTYIRSL D G+
Sbjct: 123 GKRLYELAREGKEVERKSRRVTIENLEI-LDFDGRKG-TFTCTVSKGTYIRSLIYDIGEL 180
Query: 491 LGSCAHLTALRRDSIGQYSADDAWEFKELEEAITK 525
LG+ +T+LRR +G+Y+ D A+ +E+E+ + K
Sbjct: 181 LGTYGVMTSLRRTQVGEYTLDIAYTLEEIEDMMGK 215
>gi|213963603|ref|ZP_03391855.1| tRNA pseudouridine synthase B [Capnocytophaga sputigena Capno]
gi|213953731|gb|EEB65061.1| tRNA pseudouridine synthase B [Capnocytophaga sputigena Capno]
Length = 541
Score = 189 bits (479), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 99/221 (44%), Positives = 135/221 (61%), Gaps = 10/221 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR-------RLVKVKKVGHAGTLDPMATGLLIVCVGKATK 361
G ++L++KP W+SF K++ +L K+K +GHAGTLDP+A+GLL++C GK TK
Sbjct: 10 GRVLLIDKPLQWSSFQAVNKIKWAILKHYKLKKIK-IGHAGTLDPLASGLLVICTGKFTK 68
Query: 362 LVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVP 421
+ Q +K Y+G LG T ++D ++ + R P +HI E I + F GE+ Q P
Sbjct: 69 KITEIQDAVKTYTGTITLGATTPSYDMETEIDARYPTDHITPELIEQVRKQFMGELVQTP 128
Query: 422 PMFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIR 481
P+FSAIK G+++Y+ AR G+ IE+ R I I F I+ S L F V CSKGTYIR
Sbjct: 129 PVFSAIKKDGKRLYEFARDGKEIEVPQRTIYIHNFTIDAS--QFPKLHFEVMCSKGTYIR 186
Query: 482 SLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEA 522
SL DFGKALGS +L+ALRR IG S DA +E A
Sbjct: 187 SLANDFGKALGSGGYLSALRRTKIGDLSVSDAISPEEFVTA 227
>gi|169630198|ref|YP_001703847.1| tRNA pseudouridine synthase B [Mycobacterium abscessus ATCC 19977]
gi|254764886|sp|B1MD72.1|TRUB_MYCA9 RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|169242165|emb|CAM63193.1| tRNA pseudouridine synthase B (TruB) [Mycobacterium abscessus]
Length = 298
Score = 188 bits (478), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 96/217 (44%), Positives = 133/217 (61%), Gaps = 3/217 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G TS V + RR+ +KVGHAGTLDPMATG+L++ + +ATK++
Sbjct: 10 LVIVDKPAGMTSHDVVSRCRRIFSTRKVGHAGTLDPMATGVLVIGIERATKIMGLLTLTT 69
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y+ R G++TST DA+ V+Q H+ + DI A A RG+I QVP SAIKV
Sbjct: 70 KSYAATIRFGQSTSTDDAEGEVLQTISASHLTEVDIEAAVAGLRGDIAQVPSSVSAIKVD 129
Query: 431 GEKMYDKARRGESIELSPRRISIFQFD---IERSLEDRQNLIFRVTCSKGTYIRSLCADF 487
G++ Y AR G+S+EL+ R + I +FD + S ED ++ + CS GTYIR+L D
Sbjct: 130 GQRAYKLAREGQSVELAARPVRISRFDVLAVRGSGEDLIDVDVEIDCSSGTYIRALARDA 189
Query: 488 GKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAIT 524
G ALG HLTALRR +G + D A +EL + T
Sbjct: 190 GAALGVGGHLTALRRTRVGDFGLDRARTLEELADGAT 226
>gi|429746374|ref|ZP_19279727.1| tRNA pseudouridine synthase B [Capnocytophaga sp. oral taxon 380
str. F0488]
gi|429166323|gb|EKY08313.1| tRNA pseudouridine synthase B [Capnocytophaga sp. oral taxon 380
str. F0488]
Length = 558
Score = 188 bits (478), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 94/213 (44%), Positives = 136/213 (63%), Gaps = 10/213 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR-------RLVKVKKVGHAGTLDPMATGLLIVCVGKATK 361
G ++L++KP W+SF K++ +L K+K +GHAGTLDP+A+GLL++C GK TK
Sbjct: 10 GRILLIDKPLQWSSFQAVNKIKWAILKHYKLKKIK-IGHAGTLDPLASGLLVICTGKFTK 68
Query: 362 LVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVP 421
+ Q +K Y+G +G T ++D ++ + P +HI E + + F G++ Q P
Sbjct: 69 KITEIQDAVKTYTGTITVGATTPSYDKETEIDAHYPTDHITPELMEQVRMQFIGKLTQTP 128
Query: 422 PMFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIR 481
P+FSAIK G+++Y+ AR G+ IE+ R I I F+I+ SL + L F V CSKGTYIR
Sbjct: 129 PVFSAIKKEGKRLYEFARDGKEIEVPQRTIYIHSFNIDASLFPK--LHFEVVCSKGTYIR 186
Query: 482 SLCADFGKALGSCAHLTALRRDSIGQYSADDAW 514
SL DFGKALGS +L+ALRR IG +S +DA
Sbjct: 187 SLANDFGKALGSGGYLSALRRTKIGDFSVNDAL 219
>gi|340617314|ref|YP_004735767.1| tRNA pseudouridine synthase B [Zobellia galactanivorans]
gi|339732111|emb|CAZ95379.1| tRNA pseudouridine synthase B [Zobellia galactanivorans]
Length = 237
Score = 188 bits (478), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 93/211 (44%), Positives = 134/211 (63%), Gaps = 8/211 (3%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVK------KVGHAGTLDPMATGLLIVCVGKATKL 362
G ++L++KP GW+SF KL+ ++ K K+GHAGTLDP+ATGLLI+C GK TK
Sbjct: 12 GQILLIDKPLGWSSFQAVNKLKWAIRSKFKLKKFKIGHAGTLDPLATGLLIICCGKFTKK 71
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
+ QG +K Y+G LG T ++D ++ V Q P EHI + + F G+I Q PP
Sbjct: 72 IPELQGQVKEYTGTITLGATTPSYDLETEVDQTYPTEHITKALLNETLLQFIGDIEQRPP 131
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRS 482
+FSA+K G+++Y+ AR G+ +E+ R +++ F+I + L FR+ CSKGTYIRS
Sbjct: 132 VFSALKKDGKRLYEYAREGKDVEIKTRIVNVSTFEITQM--KLPELKFRIVCSKGTYIRS 189
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDA 513
L D G+ALGS HL+ LRR IG+Y+ + A
Sbjct: 190 LAHDLGQALGSGGHLSELRRTKIGEYNVNTA 220
>gi|271963652|ref|YP_003337848.1| tRNA pseudouridine 55 synthase [Streptosporangium roseum DSM 43021]
gi|270506827|gb|ACZ85105.1| tRNA pseudouridine 55 synthase [Streptosporangium roseum DSM 43021]
Length = 299
Score = 188 bits (478), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 103/232 (44%), Positives = 138/232 (59%), Gaps = 7/232 (3%)
Query: 295 SRSTELPPTWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIV 354
+R+ PP P G +V+V+KP WTS V GKLR + ++VGHAGTLDPMATG+L+V
Sbjct: 4 ARAKRTPP----PSG-LVIVDKPAEWTSHDVVGKLRGIAGTRRVGHAGTLDPMATGVLVV 58
Query: 355 CVGKATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFR 414
V KAT+L+ KGY RLG++T+T DA+ +I + +E IRK A+
Sbjct: 59 GVEKATRLLGHLALTEKGYDATIRLGQSTNTDDAEGEIISASSAAGVAEEAIRKGVAALT 118
Query: 415 GEIWQVPPMFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIE--RSLEDRQNLIFRV 472
G+I QVPP SAIKV GE+ Y +AR GE +EL R +++ F+I R D ++ V
Sbjct: 119 GQIMQVPPQVSAIKVNGERAYKRARAGEEVELKARPVTVSGFEITGIRRDGDLIDVDASV 178
Query: 473 TCSKGTYIRSLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAIT 524
TCS GTYIR+L D G LG+ HLT LRR +G Y A ++L T
Sbjct: 179 TCSSGTYIRALARDLGADLGTGGHLTYLRRTRVGPYDLSMARTIEQLSAECT 230
>gi|433635851|ref|YP_007269478.1| tRNA pseudouridine synthase B [Mycobacterium canettii CIPT
140070017]
gi|432167444|emb|CCK64959.1| tRNA pseudouridine synthase B [Mycobacterium canettii CIPT
140070017]
Length = 298
Score = 188 bits (478), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 97/214 (45%), Positives = 131/214 (61%), Gaps = 4/214 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G TS V G+ RR+ ++VGHAGTLDPMATG+L++ + +ATK++
Sbjct: 8 IVVVDKPAGMTSHDVVGRCRRIFSTRRVGHAGTLDPMATGVLVIGIERATKILGLLTAAP 67
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y+ RLG+ TST DA+ V+Q P H+ E I A RGEI QVP SAIKVG
Sbjct: 68 KSYAATIRLGQTTSTEDAEGQVMQSVPAGHLTVEAIDAAMVRLRGEIRQVPSAVSAIKVG 127
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLI---FRVTCSKGTYIRSLCADF 487
G + Y AR+G S++L R I I +F++ R+ R LI + CS GTYIR+L D
Sbjct: 128 GRRAYRLARQGHSVQLEARPIRIDRFEL-RAARRRDQLIDIDVEIDCSSGTYIRALARDL 186
Query: 488 GKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
G ALG H+TALRR +G++ D A +L E
Sbjct: 187 GDALGVGGHVTALRRTRVGRFDLDQARSLDDLAE 220
>gi|392415917|ref|YP_006452522.1| tRNA pseudouridine synthase B [Mycobacterium chubuense NBB4]
gi|390615693|gb|AFM16843.1| tRNA pseudouridine synthase B [Mycobacterium chubuense NBB4]
Length = 296
Score = 188 bits (478), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 96/220 (43%), Positives = 136/220 (61%), Gaps = 3/220 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G TS V G+ RRL +KVGHAGTLDPMATG+L+V + +ATK++
Sbjct: 8 LVIVDKPAGMTSHDVVGRCRRLFGTRKVGHAGTLDPMATGVLVVGIERATKILGLLTATD 67
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y+ RLG+ T+T DA+ ++Q + D+ I A A RG+I Q+P SAIKVG
Sbjct: 68 KAYAATIRLGQTTTTEDAEGELVQSVSAAGVTDDRIEAAVAPLRGDIRQIPSAVSAIKVG 127
Query: 431 GEKMYDKARRGESIELSPRRISIFQFD---IERSLEDRQNLIFRVTCSKGTYIRSLCADF 487
G++ Y AR G+++EL+PR + I +FD + R + ++ V CS GTYIR+L D
Sbjct: 128 GKRAYALAREGQTVELAPRPVRITRFDVIAVRRDVPGVVDVDVVVDCSSGTYIRALARDV 187
Query: 488 GKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAITKNY 527
G ALG HLTALRR +G + D A ++L E+ +Y
Sbjct: 188 GAALGVGGHLTALRRTRVGGFGLDMARTLEQLAESPQLSY 227
>gi|163839415|ref|YP_001623820.1| tRNA pseudouridine synthase B [Renibacterium salmoninarum ATCC
33209]
gi|162952891|gb|ABY22406.1| tRNA pseudouridine synthase B [Renibacterium salmoninarum ATCC
33209]
Length = 212
Score = 188 bits (477), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 96/213 (45%), Positives = 129/213 (60%), Gaps = 17/213 (7%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP+GWTS V K+RRL +KVGHAGTLDPMATG+L++ + KATKL+ G
Sbjct: 14 LVIVDKPQGWTSHDVVAKMRRLAGTRKVGHAGTLDPMATGVLVIGINKATKLLTYIVGTS 73
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y RLG++T T DA+ +IR+A A+ GEI QVP SAIKV
Sbjct: 74 KTYDATIRLGQSTITDDAEG--------------EIRRAVAALTGEILQVPSSVSAIKVD 119
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLI---FRVTCSKGTYIRSLCADF 487
GE+ Y +AR G+ ++L+ R ++I FD+ R L+ V+CS GTYIR+L D
Sbjct: 120 GERSYARARAGKDVQLAVRPVNILSFDVHRIQSTTDGLLDVEVTVSCSSGTYIRALARDL 179
Query: 488 GKALGSCAHLTALRRDSIGQYSADDAWEFKELE 520
G ALG HLTALRR ++G Y D + L+
Sbjct: 180 GTALGVGGHLTALRRTAVGPYGLDRTQTLESLQ 212
>gi|256420717|ref|YP_003121370.1| tRNA pseudouridine synthase B [Chitinophaga pinensis DSM 2588]
gi|256035625|gb|ACU59169.1| tRNA pseudouridine synthase B [Chitinophaga pinensis DSM 2588]
Length = 232
Score = 188 bits (477), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 96/219 (43%), Positives = 133/219 (60%), Gaps = 3/219 (1%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQG 368
G +VL+NKP WTSF + K+R K K GHAGTLDP+ATGLLI C GK TK ++ YQ
Sbjct: 13 GQVVLINKPLKWTSFDIVRKIRNTTKAK-TGHAGTLDPLATGLLICCTGKMTKKINEYQA 71
Query: 369 MIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
K Y+G F +G T T+D +S +P + I +E I F GE+ Q+PP+ SAIK
Sbjct: 72 QEKEYTGTFTIGATTPTYDLESEPTDFKPLDGITEELIHDTTKQFIGELQQLPPIHSAIK 131
Query: 429 VGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFG 488
G+ +Y+ AR+G +++ PR I I +F+I + FRV CS GTYIRSL DFG
Sbjct: 132 QNGKPIYELARKGVEVKVEPRNIVIKEFEITNI--ALPVIHFRVVCSTGTYIRSLANDFG 189
Query: 489 KALGSCAHLTALRRDSIGQYSADDAWEFKELEEAITKNY 527
ALG ++++L R IG + +DAWE ++ E + +
Sbjct: 190 AALGVGGYMSSLCRTRIGAFKLEDAWEIEKFVEELGGTF 228
>gi|436837528|ref|YP_007322744.1| tRNA pseudouridine synthase B [Fibrella aestuarina BUZ 2]
gi|384068941|emb|CCH02151.1| tRNA pseudouridine synthase B [Fibrella aestuarina BUZ 2]
Length = 229
Score = 188 bits (477), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 93/208 (44%), Positives = 133/208 (63%), Gaps = 7/208 (3%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L++KP+ WTSF V KLRR K KK+GHAGTLDP+ATGLLI+C GK TK +D YQ
Sbjct: 10 LILIDKPREWTSFDVVNKLRRACKFKKIGHAGTLDPLATGLLILCTGKMTKQIDSYQAQE 69
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y+G LG+ T + D ++ I E +R AAA G I Q+PP++SA++V
Sbjct: 70 KEYTGTLVLGKTTPSVDLETDFDAEFDVSGITPEMVRDAAAQLTGTIQQIPPIYSAVRVN 129
Query: 431 GEKMYDKARRGESIE-----LSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCA 485
GE++Y++ARRGE+ + + R +++ F++ +D + FR+ CSKGTYIRSL
Sbjct: 130 GERLYERARRGETADQVEGGIKSRTVTVSVFNV--LTDDFPTIDFRIVCSKGTYIRSLVR 187
Query: 486 DFGKALGSCAHLTALRRDSIGQYSADDA 513
D G L + A+++ALRR IG + DA
Sbjct: 188 DLGLLLNNGAYMSALRRTRIGDFDVKDA 215
>gi|408370651|ref|ZP_11168426.1| tRNA pseudouridine synthase B [Galbibacter sp. ck-I2-15]
gi|407743888|gb|EKF55460.1| tRNA pseudouridine synthase B [Galbibacter sp. ck-I2-15]
Length = 229
Score = 188 bits (477), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 94/211 (44%), Positives = 139/211 (65%), Gaps = 8/211 (3%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR------RLVKVKKVGHAGTLDPMATGLLIVCVGKATKL 362
G +L++KP GW+SF K++ +K KVGHAGTLDP+ATGLL++C GK+TK
Sbjct: 9 GQTLLIDKPLGWSSFQAVNKIKWDIKKAYKLKKIKVGHAGTLDPLATGLLLICTGKSTKK 68
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
+ QG +K Y+G LG T ++D ++ + Q +HI +E I+ A SF G+I Q PP
Sbjct: 69 IAELQGQVKEYTGCVTLGATTPSYDMETEIDQTFDIDHISEEMIQDATHSFIGKIQQYPP 128
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRS 482
+FSA+K G+++Y+ AR G+S+++ PR + I F+I + + + F+VTCSKGTYIRS
Sbjct: 129 VFSALKKDGKRLYEFAREGKSVDIQPRTVEISSFEITKI--EFPKVYFKVTCSKGTYIRS 186
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDA 513
L DFGK+L S +L+ LRR IG ++ D+A
Sbjct: 187 LAYDFGKSLNSGGYLSVLRRTKIGDFNVDNA 217
>gi|404424370|ref|ZP_11005956.1| tRNA pseudouridine synthase B [Mycobacterium fortuitum subsp.
fortuitum DSM 46621]
gi|403651465|gb|EJZ06590.1| tRNA pseudouridine synthase B [Mycobacterium fortuitum subsp.
fortuitum DSM 46621]
Length = 295
Score = 188 bits (477), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 97/219 (44%), Positives = 135/219 (61%), Gaps = 2/219 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G TS V G+ RRL +KVGHAGTLDPMATG+L+V + +ATK++
Sbjct: 8 LVIVDKPAGMTSHDVVGRCRRLFGTRKVGHAGTLDPMATGVLVVGIERATKILGLLTATD 67
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K YS RLG+ T+T DA+ V+Q H+ D+ I A A RG+I QVP SAIKV
Sbjct: 68 KSYSATIRLGQTTTTEDAEGEVLQSVSAVHVTDDQIEAAVAGLRGDIEQVPSAVSAIKVD 127
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDI--ERSLEDRQNLIFRVTCSKGTYIRSLCADFG 488
G++ Y AR G+ +EL+ R + I +F++ R L D ++ V CS GTY+R+L D G
Sbjct: 128 GQRAYKLAREGQKVELAARPVRIDKFEVVAVRRLGDFVDVDVDVDCSSGTYVRALARDVG 187
Query: 489 KALGSCAHLTALRRDSIGQYSADDAWEFKELEEAITKNY 527
LG HLTALRR +G+Y D+A ++L + +Y
Sbjct: 188 VTLGVGGHLTALRRTRVGRYGLDEARTLEDLADHARLSY 226
>gi|374608294|ref|ZP_09681093.1| tRNA pseudouridine synthase B [Mycobacterium tusciae JS617]
gi|373553826|gb|EHP80413.1| tRNA pseudouridine synthase B [Mycobacterium tusciae JS617]
Length = 305
Score = 188 bits (477), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 96/214 (44%), Positives = 132/214 (61%), Gaps = 4/214 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G TS V G+ R++ +KVGHAGTLDPMATG+L+V + +ATK++
Sbjct: 18 LVVVDKPSGMTSHDVVGRCRQIFGTRKVGHAGTLDPMATGVLVVGIERATKILGMLTATD 77
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y+ RLG+ TST DA+ V+Q + + I ++ A+ RGEI QVP SAIKV
Sbjct: 78 KSYAATIRLGQTTSTEDAEGEVLQTVSAAGVDEAQIEESVAALRGEIDQVPSAVSAIKVN 137
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLI---FRVTCSKGTYIRSLCADF 487
G++ Y AR G ++ L+PRR+ I +FD+ S+ + N + V CS GTYIR+L D
Sbjct: 138 GQRAYKLAREGHAVALAPRRVRIDKFDV-LSVRRQGNFVDVDVEVHCSSGTYIRALARDV 196
Query: 488 GKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
G ALG HLTALRR +G + D A EL E
Sbjct: 197 GAALGVGGHLTALRRTRVGSFGLDLAAGLDELAE 230
>gi|340622469|ref|YP_004740921.1| tRNA pseudouridylate synthase [Capnocytophaga canimorsus Cc5]
gi|339902735|gb|AEK23814.1| tRNA pseudouridylate synthase [Capnocytophaga canimorsus Cc5]
Length = 250
Score = 187 bits (476), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 98/213 (46%), Positives = 137/213 (64%), Gaps = 11/213 (5%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR-------RLVKVKKVGHAGTLDPMATGLLIVCVGKATK 361
G ++L++KP W+SF K++ +L K+K +GHAGTLDP+A+GLL++C GK TK
Sbjct: 14 GQILLIDKPLHWSSFQAVNKIKWSIIKNYKLKKIK-IGHAGTLDPLASGLLVICTGKFTK 72
Query: 362 LVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVP 421
+ +Q +K Y+G RLG TS++D ++ + Q P HI E I + F GEI Q P
Sbjct: 73 KITEFQDALKTYTGTIRLGATTSSFDLETEIEQTFPIAHITPELIEQVRQQFVGEIEQTP 132
Query: 422 PMFSAIKVGGEKMYDKARRG-ESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYI 480
P+FSAIK G+++Y+ AR G E+IE+ R + I QF+I+ S ++ F V CSKGTYI
Sbjct: 133 PVFSAIKREGKRLYELAREGEETIEVPKRIVQIQQFNIDIS--QFPDIDFEVVCSKGTYI 190
Query: 481 RSLCADFGKALGSCAHLTALRRDSIGQYSADDA 513
RSL D GKAL S AHL ALRR IG + ++A
Sbjct: 191 RSLANDLGKALQSGAHLIALRRTRIGDFLVENA 223
>gi|332879936|ref|ZP_08447621.1| tRNA pseudouridine synthase B [Capnocytophaga sp. oral taxon 329
str. F0087]
gi|332682147|gb|EGJ55059.1| tRNA pseudouridine synthase B [Capnocytophaga sp. oral taxon 329
str. F0087]
Length = 528
Score = 187 bits (476), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 97/213 (45%), Positives = 136/213 (63%), Gaps = 10/213 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR-------RLVKVKKVGHAGTLDPMATGLLIVCVGKATK 361
G ++L++KP W+SF K++ +L K+K +GHAGTLDP+A+GLL++C GK TK
Sbjct: 10 GKILLIDKPLQWSSFQAVNKIKWAILKHYKLKKIK-IGHAGTLDPLASGLLVICTGKYTK 68
Query: 362 LVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVP 421
+ Q K Y+G LG +T ++D ++ V P +HI I + F GE QVP
Sbjct: 69 KITEIQDAPKTYTGTITLGASTPSFDMETEVDALYPTDHITPALIEQVRQQFLGEQVQVP 128
Query: 422 PMFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIR 481
P+FSAIK G+++Y+ AR GE+IE+ R+I I++FDI+ + D L F V CSKGTYIR
Sbjct: 129 PVFSAIKKDGKRLYEFAREGEAIEVPSRQIFIYKFDIDTT--DFPLLHFEVQCSKGTYIR 186
Query: 482 SLCADFGKALGSCAHLTALRRDSIGQYSADDAW 514
SL DFGKAL S +L+ALRR IG Y+ +A
Sbjct: 187 SLANDFGKALQSAGYLSALRRTQIGNYTVAEAL 219
>gi|397690713|ref|YP_006527967.1| tRNA pseudouridine synthase B [Melioribacter roseus P3M]
gi|395812205|gb|AFN74954.1| tRNA pseudouridine synthase B [Melioribacter roseus P3M]
Length = 240
Score = 187 bits (476), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 93/220 (42%), Positives = 139/220 (63%), Gaps = 2/220 (0%)
Query: 305 DGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVD 364
D P G VL++KP TSF + ++R+ V VKKVGHAGTLDP+ATGLLI+C G+ TK +
Sbjct: 15 DFPNGEAVLIDKPIRRTSFDMVHRVRKAVNVKKVGHAGTLDPLATGLLIICTGRFTKRIS 74
Query: 365 RYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMF 424
+ + K Y+G+ LG+ T ++D ++ I +E I K A+ F G+ +Q+PPM+
Sbjct: 75 EFSNLNKVYTGIISLGKTTPSYDLETEFDSSRDISGIDEEIIYKTASGFIGKSFQLPPMY 134
Query: 425 SAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLC 484
SA+K G +Y AR+G +E R I +F+FDI++ D ++ F + + GTYIR +
Sbjct: 135 SAVKKNGRALYKYARKGVEVERKEREIEVFRFDIKKI--DLPDIHFEIEVTPGTYIRVIA 192
Query: 485 ADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAIT 524
DFG+ LG A+L +LRR +IG YS +DA+ +E E +T
Sbjct: 193 HDFGQKLGCGAYLKSLRRTAIGTYSVEDAFGIEEFENFVT 232
>gi|423133216|ref|ZP_17120863.1| tRNA pseudouridine synthase B [Myroides odoratimimus CIP 101113]
gi|371649272|gb|EHO14753.1| tRNA pseudouridine synthase B [Myroides odoratimimus CIP 101113]
Length = 238
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 100/223 (44%), Positives = 145/223 (65%), Gaps = 8/223 (3%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVK------KVGHAGTLDPMATGLLIVCVGKATKL 362
G ++L++KP W+SF K++ L+K KVGHAGTLDP+A+GLLI+C GKATK
Sbjct: 12 GQILLIDKPLHWSSFQAVNKIKWLLKKHFDLKKIKVGHAGTLDPLASGLLIICTGKATKQ 71
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
+ QG IK Y+G LG T ++D ++ + Q P EHI ++ + +A SF G Q PP
Sbjct: 72 ISELQGQIKEYTGTITLGGTTPSYDLETEIDQTFPTEHITEDLLEEARLSFMGTTEQRPP 131
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRS 482
+FSA+K G+++Y+ AR+GE +E++ R I+I +F++ ++ N+ FRV CSKGTYIRS
Sbjct: 132 IFSALKKDGKRLYEHARKGEEVEIATRPITIEEFELTKT--ALPNVDFRVVCSKGTYIRS 189
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAITK 525
L DFG + S AHL+ALRR IG + +A +E EE + K
Sbjct: 190 LAYDFGNKVNSGAHLSALRRTKIGDFDVINAVTPEEFEEQVLK 232
>gi|239917231|ref|YP_002956789.1| tRNA pseudouridine synthase B [Micrococcus luteus NCTC 2665]
gi|281414294|ref|ZP_06246036.1| tRNA pseudouridine synthase B [Micrococcus luteus NCTC 2665]
gi|239838438|gb|ACS30235.1| tRNA pseudouridine synthase B [Micrococcus luteus NCTC 2665]
Length = 298
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 94/212 (44%), Positives = 131/212 (61%), Gaps = 4/212 (1%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
++KP+GWTS V G++RRL +KVGHAGTLDPMATGLL+V V KAT+L+ G K Y
Sbjct: 1 MDKPQGWTSHDVVGRIRRLAGTRKVGHAGTLDPMATGLLVVGVNKATRLLTAITGTDKTY 60
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEK 433
+ RLG++T T DA+ V+Q + E + + A+ GEI QVP SA+KV G +
Sbjct: 61 TATIRLGQSTVTDDAEGEVVQTRLANAVTPERVAEQVAALTGEILQVPSAVSAVKVAGRR 120
Query: 434 MYDKARRGESIELSPRRISIFQFDIE--RSLEDRQ--NLIFRVTCSKGTYIRSLCADFGK 489
YD+ R GE + L R +++ +F + R L+ + +L V CS GTYIR+L D G+
Sbjct: 121 AYDRVRAGEDVTLDARPVTVHEFTVHELRRLDGGRLVDLDVTVRCSSGTYIRALARDLGE 180
Query: 490 ALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
AL + HLTALRR ++G + DA + L E
Sbjct: 181 ALETGGHLTALRRTAVGPFDVADALTLEALAE 212
>gi|330997202|ref|ZP_08321055.1| tRNA pseudouridine synthase B [Paraprevotella xylaniphila YIT
11841]
gi|329570997|gb|EGG52704.1| tRNA pseudouridine synthase B [Paraprevotella xylaniphila YIT
11841]
Length = 235
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 98/214 (45%), Positives = 129/214 (60%), Gaps = 8/214 (3%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRL------VKVKKVGHAGTLDPMATGLLIVCVGKATKL 362
G ++ +KP WTSF + K+R L VK KVGHAGTLDP+ATG+L+VC GKATK
Sbjct: 6 GEILAFDKPYEWTSFGLVAKVRYLLCKRLGVKKLKVGHAGTLDPLATGVLLVCTGKATKR 65
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ Q K Y RLG T ++D + PV P EHI E + + F G I QVPP
Sbjct: 66 IEELQAHTKEYVATLRLGATTPSFDLEKPVDAEYPTEHITREMVEETLVRFVGTIEQVPP 125
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRS 482
+FSA KV G + YD AR+GE +EL + + I + ++ R + ++ RV CSKGTYIR+
Sbjct: 126 VFSACKVNGSRAYDLARKGEEVELKAKTLVIDELELLRC--ELPEIVIRVVCSKGTYIRA 183
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDAWEF 516
L D G+AL S AHLTALRR IG +D +
Sbjct: 184 LARDIGEALHSGAHLTALRRTRIGDVKVEDCLKL 217
>gi|313887412|ref|ZP_07821102.1| tRNA pseudouridine synthase B [Porphyromonas asaccharolytica
PR426713P-I]
gi|332300818|ref|YP_004442739.1| tRNA pseudouridine synthase B [Porphyromonas asaccharolytica DSM
20707]
gi|312923180|gb|EFR33999.1| tRNA pseudouridine synthase B [Porphyromonas asaccharolytica
PR426713P-I]
gi|332177881|gb|AEE13571.1| tRNA pseudouridine synthase B [Porphyromonas asaccharolytica DSM
20707]
Length = 254
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 95/221 (42%), Positives = 138/221 (62%), Gaps = 8/221 (3%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLV------KVKKVGHAGTLDPMATGLLIVCVGKATKL 362
G ++ ++KP GWTSF V K+R +V K KVGHAGTLDP ATG+L++C G+ATKL
Sbjct: 26 GAIIPLDKPLGWTSFDVVNKVRIMVRQVTGIKRIKVGHAGTLDPQATGVLVLCTGRATKL 85
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
+++ K Y +LG T ++D++ + P+EHI +E +R A + F GEI Q PP
Sbjct: 86 IEQLMDHDKEYCATLQLGATTPSFDSEHEIDATYPYEHITEEMVRSALSQFTGEIDQRPP 145
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRS 482
FSAIKVGG + YD AR+G+ +EL+ +R++I + ++ L R+ CS+GTYIRS
Sbjct: 146 SFSAIKVGGIRAYDLARQGQEVELAHKRVTIHELELVSFTPP--TLQLRIVCSRGTYIRS 203
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
L D G AL S A+LT L R G+ S D + +++E +
Sbjct: 204 LARDLGTALDSGAYLTKLVRTRSGEISQADCFSLDQMDELL 244
>gi|332881519|ref|ZP_08449168.1| tRNA pseudouridine synthase B [Capnocytophaga sp. oral taxon 329
str. F0087]
gi|357045595|ref|ZP_09107230.1| tRNA pseudouridine synthase B [Paraprevotella clara YIT 11840]
gi|332680517|gb|EGJ53465.1| tRNA pseudouridine synthase B [Capnocytophaga sp. oral taxon 329
str. F0087]
gi|355531457|gb|EHH00855.1| tRNA pseudouridine synthase B [Paraprevotella clara YIT 11840]
Length = 235
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 99/219 (45%), Positives = 130/219 (59%), Gaps = 8/219 (3%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRL------VKVKKVGHAGTLDPMATGLLIVCVGKATKL 362
G ++ +KP WTSF + K+R L VK KVGHAGTLDP+ATG+L+VC GKATK
Sbjct: 6 GEILAFDKPYEWTSFGLVAKVRYLLCKRLGVKKLKVGHAGTLDPLATGVLLVCTGKATKR 65
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ Q K Y RLG T ++D + PV P EHI E + + F G I QVPP
Sbjct: 66 IEELQAHTKEYVATLRLGATTPSFDLEKPVDAEYPTEHITREMVEETLNRFVGTIEQVPP 125
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRS 482
+FSA KV G + YD AR+GE +EL + + I + ++ R + ++ RV CSKGTYIR+
Sbjct: 126 VFSACKVNGSRAYDLARKGEEVELKAKTLVIDELELLRC--ELPEIVIRVVCSKGTYIRA 183
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
L D G AL S AHLTALRR IG +D + + E
Sbjct: 184 LARDIGAALQSGAHLTALRRTRIGAVRVEDCLKLDDFAE 222
>gi|108799062|ref|YP_639259.1| tRNA pseudouridine synthase B [Mycobacterium sp. MCS]
gi|119868177|ref|YP_938129.1| tRNA pseudouridine synthase B [Mycobacterium sp. KMS]
gi|126434665|ref|YP_001070356.1| tRNA pseudouridine synthase B [Mycobacterium sp. JLS]
gi|123070301|sp|Q1BA81.1|TRUB_MYCSS RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|254764887|sp|A3PY88.1|TRUB_MYCSJ RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|254764888|sp|A1UET1.1|TRUB_MYCSK RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|108769481|gb|ABG08203.1| tRNA pseudouridine synthase B [Mycobacterium sp. MCS]
gi|119694266|gb|ABL91339.1| tRNA pseudouridine synthase B [Mycobacterium sp. KMS]
gi|126234465|gb|ABN97865.1| tRNA pseudouridine synthase B [Mycobacterium sp. JLS]
Length = 297
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 94/209 (44%), Positives = 130/209 (62%), Gaps = 2/209 (0%)
Query: 315 NKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYS 374
+KP G TS V G+ RR+ +KVGHAGTLDPMATG+L+V + +ATKL+ K Y
Sbjct: 14 DKPAGMTSHDVVGRCRRIFGTRKVGHAGTLDPMATGVLVVGIDRATKLLGLLTATDKSYE 73
Query: 375 GVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEKM 434
RLG+ T+T DA+ V++ P I DE I A A+ RGEI QVP SAIKVGG++
Sbjct: 74 ATIRLGQTTTTEDAEGDVVETTPATGITDEQIGHAVAALRGEIDQVPSAVSAIKVGGQRA 133
Query: 435 YDKARRGESIELSPRRISIFQFDIE--RSLEDRQNLIFRVTCSKGTYIRSLCADFGKALG 492
Y AR G+++EL+ RR+ I +F++ R ++ ++ V CS GTYIR+L D G LG
Sbjct: 134 YKLAREGQTVELAARRVRIDRFEVLAIRRVDGFVDVDVAVDCSSGTYIRALARDVGVTLG 193
Query: 493 SCAHLTALRRDSIGQYSADDAWEFKELEE 521
HLT LRR +G++ D+A+ L +
Sbjct: 194 VGGHLTLLRRTRVGRFGLDEAYPLDALAD 222
>gi|403526544|ref|YP_006661431.1| tRNA pseudouridine synthase B [Arthrobacter sp. Rue61a]
gi|403228971|gb|AFR28393.1| putative tRNA pseudouridine synthase B [Arthrobacter sp. Rue61a]
Length = 323
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 95/207 (45%), Positives = 127/207 (61%), Gaps = 4/207 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP+GWTS V G++RRL +KVGHAGTLDPMATG+L++ + KAT+L+ G
Sbjct: 17 LVIVDKPQGWTSHDVVGRMRRLAGTRKVGHAGTLDPMATGVLVLGINKATRLLTYIVGTS 76
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y+ RLGE T T DA+ V + I D+ + A+ G I QVP SAIKV
Sbjct: 77 KTYTATIRLGETTITDDAEGAVTEARTAADITDDAVAVGVAALTGPIQQVPSSVSAIKVN 136
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLE-DRQNLI---FRVTCSKGTYIRSLCAD 486
GE+ Y + R GE ++L+ R ++I +FD+ D ++ V CS GTYIR+L D
Sbjct: 137 GERSYARVRSGEEVKLAARPVTIHRFDVHSITRIDGGRVVDVDVTVECSSGTYIRALARD 196
Query: 487 FGKALGSCAHLTALRRDSIGQYSADDA 513
G ALG HLTALRR +G YS D A
Sbjct: 197 LGNALGVGGHLTALRRTQVGPYSLDQA 223
>gi|163753393|ref|ZP_02160517.1| putative tRNA pseudouridine synthase [Kordia algicida OT-1]
gi|161327125|gb|EDP98450.1| putative tRNA pseudouridine synthase [Kordia algicida OT-1]
Length = 230
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 102/211 (48%), Positives = 137/211 (64%), Gaps = 8/211 (3%)
Query: 309 GTMVLVNKPKGWTSFTVCGK----LRRLVKVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G +L++KP W+SF K L+ KVKK VGHAGTLDP+ATGLLI+CVGK TK
Sbjct: 10 GQTLLIDKPLTWSSFQAVNKVKWALKSTFKVKKLKVGHAGTLDPLATGLLIICVGKHTKK 69
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
+ +QG K Y+G +G T ++D +S + + P +HI E I + F GEI QVPP
Sbjct: 70 ISEFQGQAKEYTGTITVGGTTPSYDLESEINETFPTDHITGELIHETTKQFLGEIDQVPP 129
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRS 482
+FSA+K G+++Y+ AR GE +E+ R+I+I +F+I R + + FRV CSKGTYIRS
Sbjct: 130 VFSALKKDGKRLYELARAGEEVEVPSRKITIHEFEITRIVLPEID--FRVVCSKGTYIRS 187
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDA 513
L DFGKAL S HL+ALRR IG + +A
Sbjct: 188 LAHDFGKALNSGGHLSALRRTKIGNFDVKNA 218
>gi|373108777|ref|ZP_09523058.1| tRNA pseudouridine synthase B [Myroides odoratimimus CCUG 10230]
gi|423129553|ref|ZP_17117228.1| tRNA pseudouridine synthase B [Myroides odoratimimus CCUG 12901]
gi|371646022|gb|EHO11539.1| tRNA pseudouridine synthase B [Myroides odoratimimus CCUG 10230]
gi|371648603|gb|EHO14091.1| tRNA pseudouridine synthase B [Myroides odoratimimus CCUG 12901]
Length = 238
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 100/223 (44%), Positives = 145/223 (65%), Gaps = 8/223 (3%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVK------KVGHAGTLDPMATGLLIVCVGKATKL 362
G ++L++KP W+SF K++ L+K KVGHAGTLDP+A+GLLI+C GKATK
Sbjct: 12 GQILLIDKPLHWSSFQAVNKIKWLLKKHFDLKKIKVGHAGTLDPLASGLLIICTGKATKQ 71
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
+ QG IK Y+G LG T ++D ++ + Q P EHI ++ + +A SF G Q PP
Sbjct: 72 ISELQGQIKEYTGTITLGGTTPSYDLETEIDQTFPTEHITEDLLEEARLSFMGTTEQRPP 131
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRS 482
+FSA+K G+++Y+ AR+GE +E++ R I+I +F++ ++ N+ FRV CSKGTYIRS
Sbjct: 132 IFSALKKDGKRLYEHARKGEEVEIATRPITIEEFELMKT--ALPNVDFRVVCSKGTYIRS 189
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAITK 525
L DFG + S AHL+ALRR IG + +A +E EE + K
Sbjct: 190 LAYDFGNKVNSGAHLSALRRTKIGDFDVINAVTPEEFEEQVLK 232
>gi|393782555|ref|ZP_10370738.1| tRNA pseudouridine synthase B [Bacteroides salyersiae CL02T12C01]
gi|392672782|gb|EIY66248.1| tRNA pseudouridine synthase B [Bacteroides salyersiae CL02T12C01]
Length = 237
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 97/213 (45%), Positives = 131/213 (61%), Gaps = 6/213 (2%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR----RLVKVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G ++ NKP GWTSF V G R R +KVKK VGHAGTLDP+ATG++IVC GKATK
Sbjct: 6 GEVLFFNKPLGWTSFKVVGHARYHICRRMKVKKLKVGHAGTLDPLATGVMIVCTGKATKR 65
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ +Q K Y +LG T ++D + + P EHI E + + F GEI QVPP
Sbjct: 66 IEEFQYHTKEYIATIQLGATTPSYDLEHEIDATYPTEHITREMVEETLKQFLGEIHQVPP 125
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRS 482
+FSA KV G++ YD AR+GE +EL P+ + I + ++ + + RV CSKGTYIR+
Sbjct: 126 VFSACKVDGKRAYDLARKGEEVELKPKLLVIDELELLECDLVKMEIKIRVVCSKGTYIRA 185
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDAWE 515
L D G+AL S AHLT L R +G+ +D +
Sbjct: 186 LARDIGEALHSGAHLTGLVRTRVGEVKLEDCLD 218
>gi|326335916|ref|ZP_08202093.1| tRNA pseudouridine synthase B [Capnocytophaga sp. oral taxon 338
str. F0234]
gi|325691880|gb|EGD33842.1| tRNA pseudouridine synthase B [Capnocytophaga sp. oral taxon 338
str. F0234]
Length = 236
Score = 187 bits (474), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 98/211 (46%), Positives = 132/211 (62%), Gaps = 8/211 (3%)
Query: 309 GTMVLVNKPKGWTSFTVCGKL------RRLVKVKKVGHAGTLDPMATGLLIVCVGKATKL 362
GT +L++KP W+SF KL R +K K+GHAGTLDP+ATGLLI+C GK TK
Sbjct: 7 GTTILIDKPLHWSSFQAVNKLKWAIMKRYHLKKFKIGHAGTLDPLATGLLILCTGKHTKQ 66
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
+ Q K Y+G LG T ++D ++ + P HI E I + F GE+ Q PP
Sbjct: 67 IPFIQDAPKTYTGTITLGATTPSYDLETKINATFPTTHITPELIEEIRLQFIGELTQAPP 126
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRS 482
+FSAIK G+++Y+ AR+GE E+SPR I+I ++ E + L F V CSKGTYIRS
Sbjct: 127 LFSAIKKDGKRLYELARKGEITEISPRNITIHSLNLVPYTE--KELSFEVHCSKGTYIRS 184
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDA 513
L D GKALGS A+L++LRR IG +S ++A
Sbjct: 185 LAHDIGKALGSGAYLSSLRRTHIGVHSVENA 215
>gi|163787171|ref|ZP_02181618.1| putative tRNA pseudouridine synthase [Flavobacteriales bacterium
ALC-1]
gi|159877059|gb|EDP71116.1| putative tRNA pseudouridine synthase [Flavobacteriales bacterium
ALC-1]
Length = 235
Score = 187 bits (474), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 97/211 (45%), Positives = 132/211 (62%), Gaps = 8/211 (3%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLV------KVKKVGHAGTLDPMATGLLIVCVGKATKL 362
G ++L++KP WTSF KLR + K KVGHAGTLDP+ATGLL++C GK TK
Sbjct: 13 GEVLLIDKPLTWTSFQAVNKLRWAIRQAFSIKKIKVGHAGTLDPLATGLLVICTGKMTKQ 72
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ +QG K Y+G F LG T ++D ++ + Q P +HI + I + F G+I Q PP
Sbjct: 73 INTFQGQEKEYTGTFVLGSTTPSFDLETEIDQTFPTDHISETLIHETTKQFIGKIEQFPP 132
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRS 482
+FSAIK G+++Y+ AR GE +E+ R++ + E L FRV CSKGTYIRS
Sbjct: 133 VFSAIKKDGKRLYEFARAGEKVEIKSRQVE--ITEFEIIEISGLELKFRVVCSKGTYIRS 190
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDA 513
L DFGKAL S AHL+ LRR IG + ++A
Sbjct: 191 LAHDFGKALNSGAHLSELRRTRIGNFKVENA 221
>gi|225010158|ref|ZP_03700630.1| tRNA pseudouridine synthase B [Flavobacteria bacterium MS024-3C]
gi|225005637|gb|EEG43587.1| tRNA pseudouridine synthase B [Flavobacteria bacterium MS024-3C]
Length = 238
Score = 187 bits (474), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 98/222 (44%), Positives = 140/222 (63%), Gaps = 11/222 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVK------KVGHAGTLDPMATGLLIVCVGKATKL 362
G ++L++KP W+S+ ++ +K K KVGHAGTLDP+ATGLLI+C GK TK
Sbjct: 14 GQILLIDKPLHWSSYQAVNAVKWGIKTKFNIKKIKVGHAGTLDPLATGLLIICTGKFTKK 73
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
+ QG IK Y+G LG+ T ++D ++ EHI ++ + A F G+I Q PP
Sbjct: 74 IAELQGQIKTYTGTISLGKTTPSYDLETEFNADFNTEHITEQQLLSTAELFTGDIQQRPP 133
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRS 482
+FSA+K G+++Y+ AR GES+E+ R++S+ F I + + + F V CSKGTYIRS
Sbjct: 134 VFSALKKEGKRLYEYARAGESVEIPTRQVSVHSFTI--APKTFPTIAFEVVCSKGTYIRS 191
Query: 483 LCADFGKALGSCAHLTALRRDSIGQY---SADDAWEFKELEE 521
L D+GKAL S AHL++LRR IG + +A DA FK+L E
Sbjct: 192 LAHDYGKALKSGAHLSSLRRTKIGDFNVNNAIDAASFKDLLE 233
>gi|433647229|ref|YP_007292231.1| tRNA pseudouridine synthase B [Mycobacterium smegmatis JS623]
gi|433297006|gb|AGB22826.1| tRNA pseudouridine synthase B [Mycobacterium smegmatis JS623]
Length = 293
Score = 187 bits (474), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 95/213 (44%), Positives = 132/213 (61%), Gaps = 2/213 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G TS V G+ RR+ +KVGHAGTLDPMATG+L+V + +ATK++
Sbjct: 6 IVVVDKPAGMTSHDVVGRCRRIFGTRKVGHAGTLDPMATGVLVVGIERATKILGLLTTTD 65
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K YS RLG+ TST DA+ V+Q + D+ I A + RGEI QVP SA+KVG
Sbjct: 66 KSYSATIRLGQTTSTDDAEGEVLQSVSASAVTDDQIGDAVGALRGEIAQVPSAVSAVKVG 125
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIE--RSLEDRQNLIFRVTCSKGTYIRSLCADFG 488
G++ Y R G+++EL+PR + I +FD+ R ++ ++ V CS GTYIR+L D G
Sbjct: 126 GKRAYRLVREGQTVELAPRNVRIERFDVLAIRRHDELIDVDVEVDCSSGTYIRALARDVG 185
Query: 489 KALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
AL HLTALRR +G++ D A +L E
Sbjct: 186 DALKVGGHLTALRRTRVGRFGLDQARILDDLAE 218
>gi|423328813|ref|ZP_17306620.1| tRNA pseudouridine synthase B [Myroides odoratimimus CCUG 3837]
gi|404604375|gb|EKB04009.1| tRNA pseudouridine synthase B [Myroides odoratimimus CCUG 3837]
Length = 238
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 100/223 (44%), Positives = 144/223 (64%), Gaps = 8/223 (3%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVK------KVGHAGTLDPMATGLLIVCVGKATKL 362
G ++L++KP W+SF K++ L+K KVGHAGTLDP+A+GLLI+C GKATK
Sbjct: 12 GQILLIDKPLHWSSFQAVNKIKWLLKKHFDLKKIKVGHAGTLDPLASGLLIICTGKATKQ 71
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
+ QG IK Y+G LG T ++D ++ + Q P EHI + + +A SF G Q PP
Sbjct: 72 ISELQGQIKEYTGTITLGGTTPSYDLETEIDQTFPTEHITEALLEEARLSFMGTTEQRPP 131
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRS 482
+FSA+K G+++Y+ AR+GE +E++ R I+I +F++ ++ N+ FRV CSKGTYIRS
Sbjct: 132 IFSALKKDGKRLYEHARKGEEVEIATRPITIEEFELTKT--ALPNVDFRVVCSKGTYIRS 189
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAITK 525
L DFG + S AHL+ALRR IG + +A +E EE + K
Sbjct: 190 LAYDFGNKVNSGAHLSALRRTKIGDFDVINAVTPEEFEEQVLK 232
>gi|332653580|ref|ZP_08419325.1| tRNA pseudouridine synthase B [Ruminococcaceae bacterium D16]
gi|332518726|gb|EGJ48329.1| tRNA pseudouridine synthase B [Ruminococcaceae bacterium D16]
Length = 290
Score = 186 bits (472), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 93/212 (43%), Positives = 134/212 (63%), Gaps = 2/212 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++++KP+ WTS VC KLR L K++GHAGTLDPMATG+L V VG+AT+ V+
Sbjct: 5 IIVIDKPQDWTSMDVCAKLRGLFHEKRIGHAGTLDPMATGVLPVFVGRATRAVEFASEGD 64
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y RLG T T D V++ P + E++ A A FRGEI Q+PPM+SAIKV
Sbjct: 65 KEYLAGLRLGTVTDTQDTSGRVLEEHPVS-VTREELEAALAPFRGEIQQLPPMYSAIKVN 123
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKA 490
G+K+Y+ AR+G +E PR I+I ++E E + + RV CSKGTY+R+LC D G+A
Sbjct: 124 GKKLYELARKGREVERKPRAITIHSLEVEGQ-ESEIDFLIRVRCSKGTYVRTLCHDIGQA 182
Query: 491 LGSCAHLTALRRDSIGQYSADDAWEFKELEEA 522
LG + +LRR ++ +DA +++ +A
Sbjct: 183 LGCGGTMYSLRRTMAAGFTLEDALPLEQVLQA 214
>gi|85818604|gb|EAQ39764.1| tRNA pseudouridine synthase B [Dokdonia donghaensis MED134]
Length = 241
Score = 186 bits (472), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 102/224 (45%), Positives = 144/224 (64%), Gaps = 8/224 (3%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR------RLVKVKKVGHAGTLDPMATGLLIVCVGKATKL 362
G +++ +KP WTSF + K+R R +K KVGHAGTLDP+ATGL+I+C GK TK
Sbjct: 15 GQVLIFDKPLEWTSFQLVNKVRWLIRKNRNIKKIKVGHAGTLDPLATGLMIICTGKFTKR 74
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
+ + G K Y+G LG T ++D ++ + + P EHI +EDI A +++G+I Q PP
Sbjct: 75 LHEFMGQEKEYTGTITLGGTTPSYDLETAIDKEYPTEHITEEDIYAFAKAYQGKIMQRPP 134
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRS 482
+FSA+K G+++Y+ AR GE +E+ R I I F+I R + + F+V+CSKGTYIRS
Sbjct: 135 VFSALKKEGKRLYEFARAGEEVEIPKREIHISSFEITRI--EMPEVDFKVSCSKGTYIRS 192
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAITKN 526
L DFG+ L S AHLTALRR IG YS D+A + IT++
Sbjct: 193 LAFDFGEGLKSGAHLTALRRTKIGNYSVDNAHLLDDFIREITQS 236
>gi|319952595|ref|YP_004163862.1| tRNA pseudouridine synthase b [Cellulophaga algicola DSM 14237]
gi|319421255|gb|ADV48364.1| tRNA pseudouridine synthase B [Cellulophaga algicola DSM 14237]
Length = 236
Score = 186 bits (472), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 101/212 (47%), Positives = 142/212 (66%), Gaps = 10/212 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKL----RRLVKVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G +L++KP W+SF + RR ++KK VGHAGTLDP+ATGLL++C GK+TK
Sbjct: 10 GQTLLIDKPLEWSSFQAVNSIKWSIRRKFELKKIKVGHAGTLDPLATGLLLICTGKSTKT 69
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ QG K Y+G LG T ++D +S + + P EHI + I++A F GEI Q PP
Sbjct: 70 INELQGQAKEYTGTITLGGTTPSYDLESEINETFPTEHITEALIKEATQQFLGEIEQAPP 129
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLI-FRVTCSKGTYIR 481
+FSA+K G+++Y+ AR G +E+ R I+I +F+I ++ED N++ FRV CSKGTYIR
Sbjct: 130 IFSALKKDGKRLYEYAREGIEVEIKKRPITIHEFEI-TAIED--NIVSFRVACSKGTYIR 186
Query: 482 SLCADFGKALGSCAHLTALRRDSIGQYSADDA 513
SL DFG AL S AHL++LRR IG Y+ D+A
Sbjct: 187 SLAHDFGIALKSGAHLSSLRRTKIGNYNVDNA 218
>gi|251797394|ref|YP_003012125.1| tRNA pseudouridine synthase B [Paenibacillus sp. JDR-2]
gi|247545020|gb|ACT02039.1| tRNA pseudouridine synthase B [Paenibacillus sp. JDR-2]
Length = 300
Score = 186 bits (471), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 93/213 (43%), Positives = 136/213 (63%), Gaps = 2/213 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ V KP GWTS V K+RR+V++K++GHAGTLDPM TG+L +C+G++T++V+ Q
Sbjct: 4 IIAVWKPAGWTSHDVVAKVRRIVRMKRIGHAGTLDPMVTGVLPLCLGRSTRVVEYLQERP 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y V +LG AT T D V++ + + E + + SF GEI QVPPMFSA+KV
Sbjct: 64 KAYEAVIQLGTATDTEDLTGTVLEEQTGIIVTREQVLQVLQSFVGEIDQVPPMFSAVKVD 123
Query: 431 GEKMYDKARRGESIELSPRRISIFQFD-IERSLE-DRQNLIFRVTCSKGTYIRSLCADFG 488
G+++Y+ AR G+++E R+++I Q D + L+ D+ F V CSKGTYIR+LC D G
Sbjct: 124 GKRLYELAREGKTVERKSRKVTIHQIDLLNVDLDADKPRFAFSVICSKGTYIRTLCVDIG 183
Query: 489 KALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
+ALG A + L R G + + +ELEE
Sbjct: 184 RALGVPAAMAELTRTMSGGITREQCVTLEELEE 216
>gi|311744149|ref|ZP_07717954.1| tRNA pseudouridine synthase B [Aeromicrobium marinum DSM 15272]
gi|311312504|gb|EFQ82416.1| tRNA pseudouridine synthase B [Aeromicrobium marinum DSM 15272]
Length = 293
Score = 185 bits (469), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 95/215 (44%), Positives = 128/215 (59%), Gaps = 2/215 (0%)
Query: 307 PFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRY 366
P G +V+V+KP GWTS V G++RRL +KVGHAGTLDPMATG+L++ + +AT+L+
Sbjct: 5 PRGGVVVVDKPSGWTSHDVVGRVRRLAGTRKVGHAGTLDPMATGVLVLGIERATRLLGHL 64
Query: 367 QGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSA 426
Q K Y RLG AT+T DA+ V H+ E + A RGEI QVP SA
Sbjct: 65 QLADKEYLATVRLGAATTTDDAEGEVTSTTDASHLTAEQVEAALVPLRGEIDQVPSSVSA 124
Query: 427 IKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQ--NLIFRVTCSKGTYIRSLC 484
IKV G++ Y + R GE +EL RR+++ + E+ D ++ RVTCS GTY+R+L
Sbjct: 125 IKVDGQRSYARVRAGEQVELKARRVTVAELVAEQVRVDHGFVDVDVRVTCSSGTYVRALA 184
Query: 485 ADFGKALGSCAHLTALRRDSIGQYSADDAWEFKEL 519
D G ALG HLT LRR +G + A +L
Sbjct: 185 RDVGDALGVGGHLTVLRRTRVGAFGLGVAATLDQL 219
>gi|167756862|ref|ZP_02428989.1| hypothetical protein CLORAM_02411 [Clostridium ramosum DSM 1402]
gi|167703037|gb|EDS17616.1| tRNA pseudouridine synthase B [Clostridium ramosum DSM 1402]
Length = 282
Score = 185 bits (469), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 93/213 (43%), Positives = 132/213 (61%), Gaps = 4/213 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++LVNKP G TS V KLRR++K KKVGH GTLDP ATG+L+VCV KATK++
Sbjct: 6 IILVNKPSGMTSHDVVNKLRRILKTKKVGHCGTLDPDATGVLVVCVNKATKVLQFLTSES 65
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y LG +T T+DA +I+ + + + + +I +F G Q PP++SAIKV
Sbjct: 66 KEYVATLSLGTSTDTYDASGKIIETKEFHALDNNEIVACFNNFIGSQEQKPPIYSAIKVN 125
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLI-FRVTCSKGTYIRSLCADFGK 489
G+K+Y+ AR GE +E+ R +++ +I L+ NLI F+V CSKGTYIRSLC D K
Sbjct: 126 GKKLYEYARAGEQVEVPTRSVTVNHLEI---LQIENNLIKFKVGCSKGTYIRSLCYDLAK 182
Query: 490 ALGSCAHLTALRRDSIGQYSADDAWEFKELEEA 522
ALG H+ L R G +S ++ + +++E
Sbjct: 183 ALGYPGHMKDLIRTKSGNFSLENCFTLEQIENG 215
>gi|365832580|ref|ZP_09374112.1| tRNA pseudouridine synthase B [Coprobacillus sp. 3_3_56FAA]
gi|365260244|gb|EHM90207.1| tRNA pseudouridine synthase B [Coprobacillus sp. 3_3_56FAA]
Length = 280
Score = 184 bits (468), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 93/213 (43%), Positives = 132/213 (61%), Gaps = 4/213 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++LVNKP G TS V KLRR++K KKVGH GTLDP ATG+L+VCV KATK++
Sbjct: 4 IILVNKPSGMTSHDVVNKLRRILKTKKVGHCGTLDPDATGVLVVCVNKATKVLQFLTSES 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y LG +T T+DA +I+ + + + + +I +F G Q PP++SAIKV
Sbjct: 64 KEYVATLSLGTSTDTYDASGKIIETKEFHALDNNEIVACFNNFIGSQEQKPPIYSAIKVN 123
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLI-FRVTCSKGTYIRSLCADFGK 489
G+K+Y+ AR GE +E+ R +++ +I L+ NLI F+V CSKGTYIRSLC D K
Sbjct: 124 GKKLYEYARAGEQVEVPTRSVTVNHLEI---LQIENNLIKFKVGCSKGTYIRSLCYDLAK 180
Query: 490 ALGSCAHLTALRRDSIGQYSADDAWEFKELEEA 522
ALG H+ L R G +S ++ + +++E
Sbjct: 181 ALGYPGHMKDLIRTKSGNFSLENCFTLEQIENG 213
>gi|317474695|ref|ZP_07933969.1| tRNA pseudouridine synthase B [Bacteroides eggerthii 1_2_48FAA]
gi|316909376|gb|EFV31056.1| tRNA pseudouridine synthase B [Bacteroides eggerthii 1_2_48FAA]
Length = 234
Score = 184 bits (468), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 101/219 (46%), Positives = 132/219 (60%), Gaps = 11/219 (5%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR----RLVKVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G ++ NKP GWTSF V G R R +KVKK VGHAGTLDP+ATG++IVC GKATK
Sbjct: 6 GEVLFFNKPLGWTSFKVVGHARYHICRRIKVKKLKVGHAGTLDPLATGVMIVCTGKATKR 65
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ +Q K Y RLG T ++D + + P EHI E + + F GEI QVPP
Sbjct: 66 IEEFQYHTKEYVATIRLGATTPSYDLEHEIDATYPTEHITRELVEETLKRFVGEIQQVPP 125
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRS 482
FSA V G++ YD AR+GE +EL P+ + I + ++ + + RV CSKGTYIR+
Sbjct: 126 AFSACMVNGKRAYDLARKGEEVELKPKLLVIDEIELLEC--NLPEIKVRVVCSKGTYIRA 183
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDAWE---FKE 518
L D G+AL S AHLTAL R +G +D + FKE
Sbjct: 184 LARDIGEALHSGAHLTALERTRVGDVRIEDCLDPLAFKE 222
>gi|237734572|ref|ZP_04565053.1| tRNA pseudouridine synthase B [Mollicutes bacterium D7]
gi|229382392|gb|EEO32483.1| tRNA pseudouridine synthase B [Coprobacillus sp. D7]
Length = 283
Score = 184 bits (468), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 93/213 (43%), Positives = 132/213 (61%), Gaps = 4/213 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++LVNKP G TS V KLRR++K KKVGH GTLDP ATG+L+VCV KATK++
Sbjct: 7 IILVNKPSGMTSHDVVNKLRRILKTKKVGHCGTLDPDATGVLVVCVNKATKVLQFLTSES 66
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y LG +T T+DA +I+ + + + + +I +F G Q PP++SAIKV
Sbjct: 67 KEYVATLSLGTSTDTYDASGKIIETKEFHALDNNEIVACFNNFIGSQEQKPPIYSAIKVN 126
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLI-FRVTCSKGTYIRSLCADFGK 489
G+K+Y+ AR GE +E+ R +++ +I L+ NLI F+V CSKGTYIRSLC D K
Sbjct: 127 GKKLYEYARAGEQVEVPTRSVTVNHLEI---LQIENNLIKFKVGCSKGTYIRSLCYDLAK 183
Query: 490 ALGSCAHLTALRRDSIGQYSADDAWEFKELEEA 522
ALG H+ L R G +S ++ + +++E
Sbjct: 184 ALGYPGHMKDLIRTKSGNFSLENCFTLEQIENG 216
>gi|374625675|ref|ZP_09698091.1| tRNA pseudouridine synthase B [Coprobacillus sp. 8_2_54BFAA]
gi|373915335|gb|EHQ47106.1| tRNA pseudouridine synthase B [Coprobacillus sp. 8_2_54BFAA]
Length = 280
Score = 184 bits (468), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 93/213 (43%), Positives = 132/213 (61%), Gaps = 4/213 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++LVNKP G TS V KLRR++K KKVGH GTLDP ATG+L+VCV KATK++
Sbjct: 4 IILVNKPSGMTSHDVVNKLRRILKTKKVGHCGTLDPDATGVLVVCVNKATKVLQFLTSES 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y LG +T T+DA +I+ + + + + +I +F G Q PP++SAIKV
Sbjct: 64 KEYVATLSLGTSTDTYDASGKIIETKEFHALDNNEIVACFNNFIGSQEQKPPIYSAIKVN 123
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLI-FRVTCSKGTYIRSLCADFGK 489
G+K+Y+ AR GE +E+ R +++ +I L+ NLI F+V CSKGTYIRSLC D K
Sbjct: 124 GKKLYEYARAGEQVEVPTRSVTVNHLEI---LQIENNLIKFKVGCSKGTYIRSLCYDLAK 180
Query: 490 ALGSCAHLTALRRDSIGQYSADDAWEFKELEEA 522
ALG H+ L R G +S ++ + +++E
Sbjct: 181 ALGYPGHMKDLIRTKSGNFSLENCFTLEQIENG 213
>gi|126662976|ref|ZP_01733974.1| putative tRNA pseudouridine synthase [Flavobacteria bacterium
BAL38]
gi|126624634|gb|EAZ95324.1| putative tRNA pseudouridine synthase [Flavobacteria bacterium
BAL38]
Length = 232
Score = 184 bits (468), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 97/212 (45%), Positives = 130/212 (61%), Gaps = 9/212 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR-------RLVKVKKVGHAGTLDPMATGLLIVCVGKATK 361
G ++L++KP W+SF KL+ +L K K+GHAGTLDP+ATGLLI+C GK TK
Sbjct: 9 GKVILIDKPLKWSSFQAVNKLKYALINELKLPKKFKIGHAGTLDPLATGLLIICTGKFTK 68
Query: 362 LVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVP 421
+ Q K Y+G LG T ++D ++ V P HI + I + F GEI Q P
Sbjct: 69 RITEIQAQTKEYTGTIVLGATTPSYDLETEVDATFPITHISEALILETTKQFIGEIDQKP 128
Query: 422 PMFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIR 481
P+FSAIK G+++Y+ AR G +E+ R+ +I +F+I R + + FRVTCSKGTYIR
Sbjct: 129 PVFSAIKKDGKRLYESARAGIEVEIQARKTTIHEFEITRI--ELPEVDFRVTCSKGTYIR 186
Query: 482 SLCADFGKALGSCAHLTALRRDSIGQYSADDA 513
SL DFG AL S HL+ALRR IG Y +A
Sbjct: 187 SLAFDFGLALQSGGHLSALRRTKIGDYDVVNA 218
>gi|218131683|ref|ZP_03460487.1| hypothetical protein BACEGG_03304 [Bacteroides eggerthii DSM 20697]
gi|217985986|gb|EEC52325.1| tRNA pseudouridine synthase B [Bacteroides eggerthii DSM 20697]
Length = 235
Score = 184 bits (468), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 101/219 (46%), Positives = 132/219 (60%), Gaps = 11/219 (5%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR----RLVKVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G ++ NKP GWTSF V G R R +KVKK VGHAGTLDP+ATG++IVC GKATK
Sbjct: 7 GEVLFFNKPLGWTSFKVVGHARYHICRRIKVKKLKVGHAGTLDPLATGVMIVCTGKATKR 66
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ +Q K Y RLG T ++D + + P EHI E + + F GEI QVPP
Sbjct: 67 IEEFQYHTKEYVATIRLGATTPSYDLEHDIDATYPTEHITRELVEETLKRFVGEIQQVPP 126
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRS 482
FSA V G++ YD AR+GE +EL P+ + I + ++ + + RV CSKGTYIR+
Sbjct: 127 AFSACMVNGKRAYDLARKGEEVELKPKLLVIDEIELLEC--NLPEIKVRVVCSKGTYIRA 184
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDAWE---FKE 518
L D G+AL S AHLTAL R +G +D + FKE
Sbjct: 185 LARDIGEALHSGAHLTALERTRVGDVRIEDCLDPLAFKE 223
>gi|329963283|ref|ZP_08300996.1| tRNA pseudouridine synthase B [Bacteroides fluxus YIT 12057]
gi|328528822|gb|EGF55766.1| tRNA pseudouridine synthase B [Bacteroides fluxus YIT 12057]
Length = 233
Score = 184 bits (468), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 102/219 (46%), Positives = 131/219 (59%), Gaps = 11/219 (5%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR----RLVKVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G ++ NKP GWTSF V G R R + VKK VGHAGTLDP+ATG++IVC GKATK
Sbjct: 7 GEVLYFNKPLGWTSFKVVGHARYHICRRIGVKKLKVGHAGTLDPLATGVMIVCTGKATKR 66
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ +Q K Y RLG T ++D + + P EHI E + A F GEI QVPP
Sbjct: 67 IEEFQYHTKEYVATIRLGATTPSYDLEHEIDATYPTEHITRELVEGALKKFVGEIQQVPP 126
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRS 482
FSA V G++ YD AR+GE +EL P+ + I + ++ + + RV CSKGTYIR+
Sbjct: 127 AFSACMVNGKRAYDLARKGEEVELKPKLLVIDEIELLEC--NLPEIKVRVVCSKGTYIRA 184
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDA---WEFKE 518
L D G ALGS AHLTAL R +G +D +FKE
Sbjct: 185 LARDIGLALGSGAHLTALERTRVGDIRIEDCLDPLDFKE 223
>gi|376316349|emb|CCF99743.1| tRNA pseudouridine synthase B [uncultured Dokdonia sp.]
Length = 241
Score = 184 bits (467), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 101/224 (45%), Positives = 143/224 (63%), Gaps = 8/224 (3%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR------RLVKVKKVGHAGTLDPMATGLLIVCVGKATKL 362
G +++ +KP WTSF + K+R R +K KVGHAGTLDP+ATGL+I+C GK TK
Sbjct: 15 GQVLIFDKPLEWTSFQLVNKVRWLIRKNRNIKKIKVGHAGTLDPLATGLMIICTGKFTKR 74
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
+ + G K Y+G LG T ++D ++ + + P EHI +EDI A +++G+I Q PP
Sbjct: 75 LHEFMGQEKEYTGTITLGGTTPSYDLETAIDKEYPTEHITEEDIYAFAKAYQGKIMQRPP 134
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRS 482
+FSA+K G+++Y+ AR GE +E+ R I I F+I R + + F+V+CSKGTYIRS
Sbjct: 135 VFSALKKEGKRLYEFARAGEEVEIPKREIHISSFEITRI--EMPEVDFKVSCSKGTYIRS 192
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAITKN 526
L DFG+ L S AHLTALRR IG Y D+A + IT++
Sbjct: 193 LAFDFGEGLKSGAHLTALRRTKIGDYHVDNAHLLDDFIREITQS 236
>gi|167968623|ref|ZP_02550900.1| tRNA pseudouridine synthase B [Mycobacterium tuberculosis H37Ra]
Length = 298
Score = 184 bits (467), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 95/214 (44%), Positives = 131/214 (61%), Gaps = 4/214 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+++KP G TS V G+ RR+ ++VGHAGTLDPMATG+L++ + +ATK++
Sbjct: 8 IVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILGLLTAAP 67
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y+ RLG+ TST DA+ V+Q P +H+ E I A RGEI QVP SAIKVG
Sbjct: 68 KSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSSVSAIKVG 127
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLI---FRVTCSKGTYIRSLCADF 487
G + Y AR+G S++L R I I +F++ + R LI + CS GTYIR+L D
Sbjct: 128 GRRAYRLARQGRSVQLEARPIRIDRFELL-AARRRDQLIDIDVEIDCSSGTYIRALARDL 186
Query: 488 GKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
G ALG H+TALRR +G++ D A +L E
Sbjct: 187 GDALGVGGHVTALRRTRVGRFELDQARSLDDLAE 220
>gi|298373559|ref|ZP_06983548.1| tRNA pseudouridine synthase B [Bacteroidetes oral taxon 274 str.
F0058]
gi|298274611|gb|EFI16163.1| tRNA pseudouridine synthase B [Bacteroidetes oral taxon 274 str.
F0058]
Length = 236
Score = 184 bits (467), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 93/224 (41%), Positives = 139/224 (62%), Gaps = 7/224 (3%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVK-----KVGHAGTLDPMATGLLIVCVGKATKLV 363
G ++ +KP WTSF + G++R ++ KVGHAGTLDP+ATG++I+ GKATK +
Sbjct: 6 GEILYFDKPLTWTSFDLVGRIRNIITRATGEKIKVGHAGTLDPLATGIMILATGKATKQI 65
Query: 364 DRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPM 423
+ Q +K Y +LG T ++D + P P +HI E I + F+GEI QVPP+
Sbjct: 66 ETLQSGVKEYIATLKLGATTPSFDMEHPEDAVYPTDHITKEMITNTLSHFKGEIMQVPPV 125
Query: 424 FSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSL 483
+SA+K+ G++ +D AR+G++IEL+ + ++I + IE D L RV CSKGTYIR+L
Sbjct: 126 YSAVKINGKRAFDYARKGDNIELNAKPLAIDE--IEMLNLDMPYLEIRVVCSKGTYIRAL 183
Query: 484 CADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAITKNY 527
D G ALGS A+LTAL+R IG D +E ++++ + Y
Sbjct: 184 ARDIGSALGSGAYLTALKRTRIGNIGLDRCLTIEEFKQSLDRQY 227
>gi|15609930|ref|NP_217309.1| Probable tRNA pseudouridine synthase B TruB (tRNA pseudouridine 55
synthase) (PSI55 synthase) (pseudouridylate synthase)
(uracil hydrolyase) [Mycobacterium tuberculosis H37Rv]
gi|15842331|ref|NP_337368.1| tRNA pseudouridine synthase B [Mycobacterium tuberculosis CDC1551]
gi|31793969|ref|NP_856462.1| tRNA pseudouridine synthase B [Mycobacterium bovis AF2122/97]
gi|121638673|ref|YP_978897.1| tRNA pseudouridine synthase B [Mycobacterium bovis BCG str. Pasteur
1173P2]
gi|148662635|ref|YP_001284158.1| tRNA pseudouridine synthase B [Mycobacterium tuberculosis H37Ra]
gi|148823981|ref|YP_001288735.1| tRNA pseudouridine synthase B [Mycobacterium tuberculosis F11]
gi|224991165|ref|YP_002645854.1| tRNA pseudouridine synthase B [Mycobacterium bovis BCG str. Tokyo
172]
gi|253798123|ref|YP_003031124.1| tRNA pseudouridine synthase B [Mycobacterium tuberculosis KZN 1435]
gi|254232889|ref|ZP_04926216.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis C]
gi|254365444|ref|ZP_04981489.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis str.
Haarlem]
gi|254551851|ref|ZP_05142298.1| tRNA pseudouridine synthase B [Mycobacterium tuberculosis '98-R604
INH-RIF-EM']
gi|289448451|ref|ZP_06438195.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis
CPHL_A]
gi|289570972|ref|ZP_06451199.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis T17]
gi|289575491|ref|ZP_06455718.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis K85]
gi|289746596|ref|ZP_06505974.1| tRNA pseudouridine synthase B [Mycobacterium tuberculosis 02_1987]
gi|289754899|ref|ZP_06514277.1| tRNA pseudouridine synthase B [Mycobacterium tuberculosis EAS054]
gi|289762967|ref|ZP_06522345.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis GM
1503]
gi|294994114|ref|ZP_06799805.1| tRNA pseudouridine synthase B [Mycobacterium tuberculosis 210]
gi|297635404|ref|ZP_06953184.1| tRNA pseudouridine synthase B [Mycobacterium tuberculosis KZN 4207]
gi|297732402|ref|ZP_06961520.1| tRNA pseudouridine synthase B [Mycobacterium tuberculosis KZN R506]
gi|298526259|ref|ZP_07013668.1| tRNA pseudouridine synthase B [Mycobacterium tuberculosis
94_M4241A]
gi|306777074|ref|ZP_07415411.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis
SUMu001]
gi|306780976|ref|ZP_07419313.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis
SUMu002]
gi|306785604|ref|ZP_07423926.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis
SUMu003]
gi|306790199|ref|ZP_07428521.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis
SUMu004]
gi|306794283|ref|ZP_07432585.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis
SUMu005]
gi|306798701|ref|ZP_07437003.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis
SUMu006]
gi|306804556|ref|ZP_07441224.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis
SUMu008]
gi|306807404|ref|ZP_07444072.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis
SUMu007]
gi|306968855|ref|ZP_07481516.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis
SUMu009]
gi|306973189|ref|ZP_07485850.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis
SUMu010]
gi|307080898|ref|ZP_07490068.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis
SUMu011]
gi|307085489|ref|ZP_07494602.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis
SUMu012]
gi|313659734|ref|ZP_07816614.1| tRNA pseudouridine synthase B [Mycobacterium tuberculosis KZN
V2475]
gi|339632804|ref|YP_004724446.1| tRNA pseudouridine synthase B TRUB [Mycobacterium africanum
GM041182]
gi|375295391|ref|YP_005099658.1| tRNA pseudouridine synthase B [Mycobacterium tuberculosis KZN 4207]
gi|378772528|ref|YP_005172261.1| tRNA pseudouridine synthase B [Mycobacterium bovis BCG str. Mexico]
gi|385992066|ref|YP_005910364.1| tRNA pseudouridine synthase B [Mycobacterium tuberculosis CCDC5180]
gi|385995688|ref|YP_005913986.1| tRNA pseudouridine synthase B [Mycobacterium tuberculosis CCDC5079]
gi|392387425|ref|YP_005309054.1| truB [Mycobacterium tuberculosis UT205]
gi|392431599|ref|YP_006472643.1| tRNA pseudouridine synthase B [Mycobacterium tuberculosis KZN 605]
gi|397674704|ref|YP_006516239.1| tRNA pseudouridine synthase B [Mycobacterium tuberculosis H37Rv]
gi|422813839|ref|ZP_16862211.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis
CDC1551A]
gi|424805132|ref|ZP_18230563.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis
W-148]
gi|424948444|ref|ZP_18364140.1| tRNA pseudouridine synthase B [Mycobacterium tuberculosis NCGM2209]
gi|449064865|ref|YP_007431948.1| tRNA pseudouridine synthase B [Mycobacterium bovis BCG str. Korea
1168P]
gi|49065852|sp|P62189.1|TRUB_MYCBO RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|49065853|sp|P62190.1|TRUB_MYCTU RecName: Full=tRNA pseudouridine synthase B; AltName:
Full=MTB-TRUB; AltName: Full=tRNA pseudouridine(55)
synthase; Short=Psi55 synthase; AltName: Full=tRNA
pseudouridylate synthase; AltName: Full=tRNA-uridine
isomerase
gi|189036543|sp|A1KMD6.1|TRUB_MYCBP RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|189036544|sp|A5U6E6.1|TRUB_MYCTA RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|13882627|gb|AAK47182.1| tRNA pseudouridine synthase B [Mycobacterium tuberculosis CDC1551]
gi|31619563|emb|CAD95001.1| PROBABLE TRNA PSEUDOURIDINE SYNTHASE B TRUB (TRNA PSEUDOURIDINE 55
SYNTHASE) (PSI55 SYNTHASE) (PSEUDOURIDYLATE SYNTHASE)
(URACIL HYDROLYASE) [Mycobacterium bovis AF2122/97]
gi|121494321|emb|CAL72799.1| Probable trna pseudouridine synthase B truB [Mycobacterium bovis
BCG str. Pasteur 1173P2]
gi|124601948|gb|EAY60958.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis C]
gi|134150957|gb|EBA43002.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis str.
Haarlem]
gi|148506787|gb|ABQ74596.1| tRNA pseudouridine synthase B [Mycobacterium tuberculosis H37Ra]
gi|148722508|gb|ABR07133.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis F11]
gi|224774280|dbj|BAH27086.1| tRNA pseudouridine synthase B [Mycobacterium bovis BCG str. Tokyo
172]
gi|253319626|gb|ACT24229.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis KZN
1435]
gi|289421409|gb|EFD18610.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis
CPHL_A]
gi|289539922|gb|EFD44500.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis K85]
gi|289544726|gb|EFD48374.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis T17]
gi|289687124|gb|EFD54612.1| tRNA pseudouridine synthase B [Mycobacterium tuberculosis 02_1987]
gi|289695486|gb|EFD62915.1| tRNA pseudouridine synthase B [Mycobacterium tuberculosis EAS054]
gi|289710473|gb|EFD74489.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis GM
1503]
gi|298496053|gb|EFI31347.1| tRNA pseudouridine synthase B [Mycobacterium tuberculosis
94_M4241A]
gi|308214583|gb|EFO73982.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis
SUMu001]
gi|308326229|gb|EFP15080.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis
SUMu002]
gi|308329787|gb|EFP18638.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis
SUMu003]
gi|308333392|gb|EFP22243.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis
SUMu004]
gi|308337416|gb|EFP26267.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis
SUMu005]
gi|308341081|gb|EFP29932.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis
SUMu006]
gi|308346135|gb|EFP34986.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis
SUMu007]
gi|308348886|gb|EFP37737.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis
SUMu008]
gi|308353606|gb|EFP42457.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis
SUMu009]
gi|308357452|gb|EFP46303.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis
SUMu010]
gi|308361401|gb|EFP50252.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis
SUMu011]
gi|308365013|gb|EFP53864.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis
SUMu012]
gi|323718639|gb|EGB27803.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis
CDC1551A]
gi|326904408|gb|EGE51341.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis
W-148]
gi|328457896|gb|AEB03319.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis KZN
4207]
gi|339295642|gb|AEJ47753.1| tRNA pseudouridine synthase B [Mycobacterium tuberculosis CCDC5079]
gi|339299259|gb|AEJ51369.1| tRNA pseudouridine synthase B [Mycobacterium tuberculosis CCDC5180]
gi|339332160|emb|CCC27868.1| putative tRNA pseudouridine synthase B TRUB [Mycobacterium
africanum GM041182]
gi|341602711|emb|CCC65387.1| probable trna pseudouridine synthase B truB [Mycobacterium bovis
BCG str. Moreau RDJ]
gi|356594849|gb|AET20078.1| tRNA pseudouridine synthase B [Mycobacterium bovis BCG str. Mexico]
gi|358232959|dbj|GAA46451.1| tRNA pseudouridine synthase B [Mycobacterium tuberculosis NCGM2209]
gi|378545976|emb|CCE38254.1| truB [Mycobacterium tuberculosis UT205]
gi|379029106|dbj|BAL66839.1| tRNA pseudouridine synthase B [Mycobacterium tuberculosis str.
Erdman = ATCC 35801]
gi|392053008|gb|AFM48566.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis KZN
605]
gi|395139609|gb|AFN50768.1| tRNA pseudouridine synthase B [Mycobacterium tuberculosis H37Rv]
gi|440582271|emb|CCG12674.1| putative TRNA PSEUDOURIDINE SYNTHASE B TRUB (TRNA PSEUDOURIDINE 55
SYNTHASE) (PSI55 SYNTHASE) (PSEUDOURIDYLATE SYNTHASE)
(URACIL HYDROLYASE) [Mycobacterium tuberculosis 7199-99]
gi|444896331|emb|CCP45592.1| Probable tRNA pseudouridine synthase B TruB (tRNA pseudouridine 55
synthase) (PSI55 synthase) (pseudouridylate synthase)
(uracil hydrolyase) [Mycobacterium tuberculosis H37Rv]
gi|449033373|gb|AGE68800.1| tRNA pseudouridine synthase B [Mycobacterium bovis BCG str. Korea
1168P]
Length = 298
Score = 184 bits (467), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 95/214 (44%), Positives = 131/214 (61%), Gaps = 4/214 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+++KP G TS V G+ RR+ ++VGHAGTLDPMATG+L++ + +ATK++
Sbjct: 8 IVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILGLLTAAP 67
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y+ RLG+ TST DA+ V+Q P +H+ E I A RGEI QVP SAIKVG
Sbjct: 68 KSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSSVSAIKVG 127
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLI---FRVTCSKGTYIRSLCADF 487
G + Y AR+G S++L R I I +F++ + R LI + CS GTYIR+L D
Sbjct: 128 GRRAYRLARQGRSVQLEARPIRIDRFELL-AARRRDQLIDIDVEIDCSSGTYIRALARDL 186
Query: 488 GKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
G ALG H+TALRR +G++ D A +L E
Sbjct: 187 GDALGVGGHVTALRRTRVGRFELDQARSLDDLAE 220
>gi|383308548|ref|YP_005361359.1| tRNA pseudouridine synthase B [Mycobacterium tuberculosis RGTB327]
gi|380722501|gb|AFE17610.1| tRNA pseudouridine synthase B [Mycobacterium tuberculosis RGTB327]
Length = 301
Score = 184 bits (467), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 95/214 (44%), Positives = 131/214 (61%), Gaps = 4/214 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+++KP G TS V G+ RR+ ++VGHAGTLDPMATG+L++ + +ATK++
Sbjct: 8 IVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILGLLTAAP 67
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y+ RLG+ TST DA+ V+Q P +H+ E I A RGEI QVP SAIKVG
Sbjct: 68 KSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSSVSAIKVG 127
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLI---FRVTCSKGTYIRSLCADF 487
G + Y AR+G S++L R I I +F++ + R LI + CS GTYIR+L D
Sbjct: 128 GRRAYRLARQGRSVQLEARPIRIDRFELL-AARRRDQLIDIDVEIDCSSGTYIRALARDL 186
Query: 488 GKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
G ALG H+TALRR +G++ D A +L E
Sbjct: 187 GDALGVGGHVTALRRTRVGRFELDQARSLDDLAE 220
>gi|46015795|pdb|1SGV|A Chain A, Structure Of Trna Psi55 Pseudouridine Synthase (Trub)
gi|46015796|pdb|1SGV|B Chain B, Structure Of Trna Psi55 Pseudouridine Synthase (Trub)
Length = 316
Score = 184 bits (467), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 95/214 (44%), Positives = 131/214 (61%), Gaps = 4/214 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+++KP G TS V G+ RR+ ++VGHAGTLDPMATG+L++ + +ATK++
Sbjct: 8 IVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILGLLTAAP 67
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y+ RLG+ TST DA+ V+Q P +H+ E I A RGEI QVP SAIKVG
Sbjct: 68 KSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSSVSAIKVG 127
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLI---FRVTCSKGTYIRSLCADF 487
G + Y AR+G S++L R I I +F++ + R LI + CS GTYIR+L D
Sbjct: 128 GRRAYRLARQGRSVQLEARPIRIDRFELL-AARRRDQLIDIDVEIDCSSGTYIRALARDL 186
Query: 488 GKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
G ALG H+TALRR +G++ D A +L E
Sbjct: 187 GDALGVGGHVTALRRTRVGRFELDQARSLDDLAE 220
>gi|224537234|ref|ZP_03677773.1| hypothetical protein BACCELL_02111 [Bacteroides cellulosilyticus
DSM 14838]
gi|423222999|ref|ZP_17209468.1| tRNA pseudouridine synthase B [Bacteroides cellulosilyticus
CL02T12C19]
gi|224521157|gb|EEF90262.1| hypothetical protein BACCELL_02111 [Bacteroides cellulosilyticus
DSM 14838]
gi|392640575|gb|EIY34374.1| tRNA pseudouridine synthase B [Bacteroides cellulosilyticus
CL02T12C19]
Length = 233
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 100/219 (45%), Positives = 133/219 (60%), Gaps = 11/219 (5%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR----RLVKVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G ++ NKP GWTSF V G R R +KVKK VGHAGTLDP+ATG++IVC GKATK
Sbjct: 6 GEVLYFNKPLGWTSFKVVGHARYHICRRMKVKKLKVGHAGTLDPLATGVMIVCTGKATKR 65
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ +Q K Y +LG T ++D + + P EHI E + + +F GEI QVPP
Sbjct: 66 IEEFQYHTKEYVATIQLGATTPSYDLEHEIDATYPTEHITRELVEETLKTFIGEIQQVPP 125
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRS 482
FSA V G++ YD AR+GE +EL P+ + I + ++ + + RV CSKGTYIR+
Sbjct: 126 AFSACMVNGKRAYDLARKGEEVELKPKLLVIDEIELLEC--NLPEIKIRVVCSKGTYIRA 183
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDA---WEFKE 518
L D G+AL S AHLTAL R +G +D +FKE
Sbjct: 184 LARDIGEALNSGAHLTALERTRVGDVRLEDCLDPMDFKE 222
>gi|238063389|ref|ZP_04608098.1| tRNA pseudouridine synthase B [Micromonospora sp. ATCC 39149]
gi|237885200|gb|EEP74028.1| tRNA pseudouridine synthase B [Micromonospora sp. ATCC 39149]
Length = 300
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 97/213 (45%), Positives = 135/213 (63%), Gaps = 3/213 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++V+KP G TS V ++RRL + ++VGH GTLDPMATG+L++ VG+AT+L+ G
Sbjct: 12 LIVVDKPGGMTSHDVVARIRRLARTRRVGHGGTLDPMATGVLVIGVGRATRLLTYVIGAG 71
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y+ R G+AT T DA+ VI P + + DE IR A A+F GEI QVP SAIK+
Sbjct: 72 KSYTATVRFGQATVTDDAEGDVISATPADAVADEAIRSAFAAFAGEIDQVPSAVSAIKIN 131
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLI---FRVTCSKGTYIRSLCADF 487
GE+ Y + R GES++L RR++I + D+ + L+ VTCS GTYIR+L D
Sbjct: 132 GERAYKRVREGESVDLPARRVTISRLDVLAVRRETPGLVDVDIDVTCSSGTYIRALARDA 191
Query: 488 GKALGSCAHLTALRRDSIGQYSADDAWEFKELE 520
G AL HLTALRR ++G ++ +A ELE
Sbjct: 192 GLALSVGGHLTALRRTAVGGFALGEAATLDELE 224
>gi|189464706|ref|ZP_03013491.1| hypothetical protein BACINT_01050 [Bacteroides intestinalis DSM
17393]
gi|189436980|gb|EDV05965.1| tRNA pseudouridine synthase B [Bacteroides intestinalis DSM 17393]
Length = 233
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 100/219 (45%), Positives = 133/219 (60%), Gaps = 11/219 (5%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR----RLVKVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G ++ NKP GWTSF V G R R +KVKK VGHAGTLDP+ATG++IVC GKATK
Sbjct: 6 GEVLYFNKPLGWTSFKVVGHARYHICRRMKVKKLKVGHAGTLDPLATGVMIVCTGKATKR 65
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ +Q K Y +LG T ++D + + P EHI E + + +F GEI QVPP
Sbjct: 66 IEEFQYHTKEYVATIQLGATTPSYDLEHEIDATYPTEHITRELVEETLKTFIGEIQQVPP 125
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRS 482
FSA V G++ YD AR+GE +EL P+ + I + ++ + + RV CSKGTYIR+
Sbjct: 126 AFSACMVNGKRAYDLARKGEEVELKPKLLVIDEIELLEC--NLPEIKVRVVCSKGTYIRA 183
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDAWE---FKE 518
L D G+AL S AHLTAL R +G +D + FKE
Sbjct: 184 LARDIGEALNSGAHLTALERTRVGDVRLEDCLDPMNFKE 222
>gi|329956419|ref|ZP_08297016.1| tRNA pseudouridine synthase B [Bacteroides clarus YIT 12056]
gi|328524316|gb|EGF51386.1| tRNA pseudouridine synthase B [Bacteroides clarus YIT 12056]
Length = 237
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 101/219 (46%), Positives = 132/219 (60%), Gaps = 11/219 (5%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR----RLVKVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G ++ NKP GWTSF V G R R +KVKK VGHAGTLDP+ATG++IVC GKATK
Sbjct: 9 GEVLYFNKPLGWTSFKVVGHARYHICRRMKVKKLKVGHAGTLDPLATGVMIVCTGKATKR 68
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ +Q K Y RLG T ++D + + P EHI E + + F GEI QVPP
Sbjct: 69 IEEFQYHTKEYIATIRLGATTPSYDLEHEIDATYPTEHITRELVEETLKRFIGEIQQVPP 128
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRS 482
FSA V G++ YD AR+GE +EL P+ + I + ++ + + RV CSKGTYIR+
Sbjct: 129 AFSACMVNGKRAYDLARKGEEVELKPKLLVIDEIELLEC--NLPEIKVRVVCSKGTYIRA 186
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDA---WEFKE 518
L D G+AL S AHLTAL R +G +D +FKE
Sbjct: 187 LARDIGEALNSGAHLTALERTRVGDVRIEDCLNPLDFKE 225
>gi|347537529|ref|YP_004844954.1| tRNA pseudouridine synthase B [Flavobacterium branchiophilum FL-15]
gi|345530687|emb|CCB70717.1| tRNA pseudouridine synthase B [Flavobacterium branchiophilum FL-15]
Length = 225
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 95/219 (43%), Positives = 136/219 (62%), Gaps = 9/219 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR-------RLVKVKKVGHAGTLDPMATGLLIVCVGKATK 361
G ++L++KP W+SF KL+ RL K K+GHAGTLDP+ATGLLIVC GK TK
Sbjct: 9 GQIILIDKPLQWSSFQAVNKLKYHLMNTYRLPKKYKIGHAGTLDPLATGLLIVCTGKFTK 68
Query: 362 LVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVP 421
+ Q K Y+G LG T ++D ++ + HI ++ I F GEI Q P
Sbjct: 69 KISEIQAQPKEYTGTITLGATTPSYDLETEIDAVFDTNHITEKLIFDTVTFFLGEIDQKP 128
Query: 422 PMFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIR 481
P+FSAIK G+++Y+ AR GE++E++ R+ +I++F+I + + FR+ CSKGTYIR
Sbjct: 129 PVFSAIKKEGKRLYEHARAGETVEIASRKTTIYEFEITKIAFPHVD--FRIKCSKGTYIR 186
Query: 482 SLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELE 520
S+ DFGKAL S AHL+ LRR IG + +A ++L+
Sbjct: 187 SIAFDFGKALQSGAHLSKLRRTKIGDFEVANASTIEDLK 225
>gi|227872008|ref|ZP_03990393.1| tRNA pseudouridine 55 synthase [Oribacterium sinus F0268]
gi|227842151|gb|EEJ52396.1| tRNA pseudouridine 55 synthase [Oribacterium sinus F0268]
Length = 531
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 96/210 (45%), Positives = 133/210 (63%), Gaps = 3/210 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ VNK KG TSF V LRR+++ KK+GH GTLDPMA G+L+VCVGKATK VD
Sbjct: 4 IINVNKEKGMTSFDVLRALRRILREKKMGHTGTLDPMAEGVLLVCVGKATKYVDALMAKE 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y LG T T D+ ++ E I EDI K F G+ Q+PPM+SA K+
Sbjct: 64 KIYQAELTLGIETDTEDSTGKILSEEEVS-ISKEDIEKILPRFLGKQEQIPPMYSAKKLE 122
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKA 490
G+K+Y+ AR G+++E P +I IF +I D L FR+ CSKGTYIR+LC D G+A
Sbjct: 123 GKKLYELAREGKTVERKPSQIEIFALEILSY--DCPKLRFRIHCSKGTYIRTLCKDIGEA 180
Query: 491 LGSCAHLTALRRDSIGQYSADDAWEFKELE 520
LG+ A ++AL R+ +G++S +++ E+E
Sbjct: 181 LGTKACMSALLREQVGEFSLKNSFSLSEIE 210
>gi|150009010|ref|YP_001303753.1| tRNA pseudouridine synthase B [Parabacteroides distasonis ATCC
8503]
gi|189036548|sp|A6LEL7.1|TRUB_PARD8 RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|149937434|gb|ABR44131.1| tRNA pseudouridine synthase B [Parabacteroides distasonis ATCC
8503]
Length = 235
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 97/224 (43%), Positives = 137/224 (61%), Gaps = 8/224 (3%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR----RLVKVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G ++ NKP WTSF + K R R +KVKK VGHAGTLDP+ATG++IVC G+ATK
Sbjct: 6 GEILYFNKPLTWTSFDLVNKFRYKLSRKLKVKKIKVGHAGTLDPLATGVMIVCTGRATKR 65
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
+D +Q K Y +LGE T ++D + + P EHI E + + +F G I Q+PP
Sbjct: 66 IDEFQYQTKEYIATLKLGETTPSFDLEKEIDAVYPTEHITRELVEEVLKTFVGTIQQIPP 125
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRS 482
+FSA KV G++ Y+ AR+GE +EL + + I + ++ D + RV CSKGTYIR+
Sbjct: 126 VFSACKVEGKRAYELARKGEEVELKSKTLVIDELELLEC--DLPVIKIRVVCSKGTYIRA 183
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAITKN 526
L D GKALGS AHL L R IG+ + D +E+++ + +N
Sbjct: 184 LARDIGKALGSGAHLIGLERTRIGEVTLDMCMSPEEIDDFLEQN 227
>gi|167763959|ref|ZP_02436086.1| hypothetical protein BACSTE_02342 [Bacteroides stercoris ATCC
43183]
gi|167698075|gb|EDS14654.1| tRNA pseudouridine synthase B [Bacteroides stercoris ATCC 43183]
Length = 236
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 101/219 (46%), Positives = 132/219 (60%), Gaps = 11/219 (5%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR----RLVKVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G ++ NKP GWTSF V G R R +KVKK VGHAGTLDP+ATG++IVC GKATK
Sbjct: 7 GEVLYFNKPLGWTSFKVVGHARYHICRRMKVKKLKVGHAGTLDPLATGVMIVCTGKATKR 66
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ +Q K Y RLG T ++D + + P EHI E + + F GEI QVPP
Sbjct: 67 IEEFQYHTKEYIATIRLGATTPSYDLEHEIDATYPTEHITRELVEETLKKFTGEIQQVPP 126
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRS 482
FSA V G++ YD AR+GE +EL P+ + I + ++ + + RV CSKGTYIR+
Sbjct: 127 AFSACMVNGKRAYDLARKGEEVELKPKLLVIDEIELLEC--NLPEIKVRVVCSKGTYIRA 184
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDA---WEFKE 518
L D G+AL S AHLTAL R +G +D +FKE
Sbjct: 185 LARDIGEALHSGAHLTALERTRVGDVRIEDCLNPLDFKE 223
>gi|319900630|ref|YP_004160358.1| tRNA pseudouridine synthase B [Bacteroides helcogenes P 36-108]
gi|319415661|gb|ADV42772.1| tRNA pseudouridine synthase B [Bacteroides helcogenes P 36-108]
Length = 235
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 103/220 (46%), Positives = 134/220 (60%), Gaps = 13/220 (5%)
Query: 309 GTMVLVNKPKGWTSFTVCGK-----LRRL-VKVKKVGHAGTLDPMATGLLIVCVGKATKL 362
G ++ NKP GWTSF V G RR+ VK KVGHAGTLDP+ATG++IVC G+ATK
Sbjct: 7 GEVLYFNKPLGWTSFKVVGHARYHICRRMGVKKLKVGHAGTLDPLATGVMIVCTGRATKR 66
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ +Q K Y RLG T ++D + V P EHI E + +A F GEI Q+PP
Sbjct: 67 IEEFQYHTKEYVATIRLGATTPSYDLEHEVDATYPTEHITREMVEEALKKFIGEIQQIPP 126
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFD-IERSLEDRQNLIFRVTCSKGTYIR 481
FSA V G++ YD AR+GE +EL + + I + + +E SL D + RV CSKGTYIR
Sbjct: 127 AFSACMVNGKRAYDLARKGEEVELKAKLLVIDEIELLECSLPDIK---IRVVCSKGTYIR 183
Query: 482 SLCADFGKALGSCAHLTALRRDSIGQYSADDAWE---FKE 518
+L D G+AL S AHLTAL R +G +D + FKE
Sbjct: 184 ALARDIGEALNSGAHLTALERTRVGNVRIEDCLDPLLFKE 223
>gi|378823632|ref|ZP_09846242.1| tRNA pseudouridine synthase B [Sutterella parvirubra YIT 11816]
gi|378597552|gb|EHY30830.1| tRNA pseudouridine synthase B [Sutterella parvirubra YIT 11816]
Length = 327
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 101/221 (45%), Positives = 132/221 (59%), Gaps = 8/221 (3%)
Query: 302 PTWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATK 361
P D G M+L +KP G +S ++RR+V K GH GTLDP A+GLL +C G ATK
Sbjct: 5 PKGDAVDGVMLL-DKPVGMSSNHALQRVRRMVNAAKAGHTGTLDPAASGLLPLCFGNATK 63
Query: 362 LVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVP 421
+KGY+ +LGEAT T DA+ VI+ + +E + +AA SF G+I QVP
Sbjct: 64 FSADLLHAVKGYTARVKLGEATDTGDAEGDVIETSAAP-VTEEALLEAARSFLGDILQVP 122
Query: 422 PMFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTC--SKGTY 479
PM+SA+K GE +YD ARRGE +E PR ++I + I D F + C SKGTY
Sbjct: 123 PMYSALKRNGECLYDIARRGEVVERQPRPVTIHELTI----RDFDGTSFTMDCLVSKGTY 178
Query: 480 IRSLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELE 520
IR L D G+ LGSCAHLTALRR +G+ + D A + LE
Sbjct: 179 IRVLAEDIGRKLGSCAHLTALRRTRVGELTLDAAVTMEALE 219
>gi|333377155|ref|ZP_08468891.1| tRNA pseudouridine synthase B [Dysgonomonas mossii DSM 22836]
gi|332886368|gb|EGK06612.1| tRNA pseudouridine synthase B [Dysgonomonas mossii DSM 22836]
Length = 231
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 101/221 (45%), Positives = 136/221 (61%), Gaps = 8/221 (3%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR----RLVKVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G ++ +NKP WTSFT+ KLR R + +KK VGHAGTLDP+ATG++IVC GK TKL
Sbjct: 6 GEVLYINKPLNWTSFTLVRKLRNKLCRKLGIKKLKVGHAGTLDPLATGVMIVCTGKKTKL 65
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ +Q K Y ++GE T ++D ++ V P EHI E + F GEI QVPP
Sbjct: 66 IESFQYQTKEYIATIKIGETTPSFDLETAVDGVFPVEHITKELVEAKLKDFIGEIEQVPP 125
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRS 482
+SA KV G++ Y+ AR G+ +EL P+ + I + IE + RV CSKGTYIR+
Sbjct: 126 TYSACKVDGKRAYEFAREGQDVELKPKLLVIDE--IELLNYSFPEIRVRVVCSKGTYIRA 183
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
L D G ALGS AHLTAL R IG+ + D E ++EE +
Sbjct: 184 LARDIGVALGSGAHLTALERTRIGEVTLDQCIEGSQIEEFV 224
>gi|418247743|ref|ZP_12874129.1| tRNA pseudouridine synthase B [Mycobacterium abscessus 47J26]
gi|353452236|gb|EHC00630.1| tRNA pseudouridine synthase B [Mycobacterium abscessus 47J26]
Length = 298
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 94/217 (43%), Positives = 129/217 (59%), Gaps = 3/217 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G TS V + RR+ +KVGHAGTLDPMATG+L++ + +ATK++
Sbjct: 10 LVIVDKPAGMTSHDVVSRCRRIFSTRKVGHAGTLDPMATGVLVIGIERATKIMGLLTLTT 69
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y+ R G++TST DA+ V+Q H+ + DI A A RG+I QVP SAIKV
Sbjct: 70 KSYAATIRFGQSTSTDDAEGEVLQTISASHLTEVDIEAAVAGLRGDIAQVPSSVSAIKVD 129
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLI---FRVTCSKGTYIRSLCADF 487
G++ Y AR G+S+EL+ R + I +FD+ L+ V CS GTYIR+L D
Sbjct: 130 GQRAYKLAREGQSVELAARPVHISRFDVLGVRHPDDGLVDVDVEVDCSSGTYIRALARDA 189
Query: 488 GKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAIT 524
G ALG HLTALRR +G + D A + L + T
Sbjct: 190 GAALGVGGHLTALRRTRVGDFGLDRARALEALADEAT 226
>gi|385999574|ref|YP_005917873.1| tRNA pseudouridine synthase B [Mycobacterium tuberculosis CTRI-2]
gi|344220621|gb|AEN01252.1| tRNA pseudouridine synthase B [Mycobacterium tuberculosis CTRI-2]
Length = 298
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 95/214 (44%), Positives = 130/214 (60%), Gaps = 4/214 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+++KP G TS V G+ RR+ ++VGHAGTLDPMATG+L++ + +ATK++
Sbjct: 8 IVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILGLLTAAP 67
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y+ RLG+ TST DA+ V+Q P +H+ E I A RGEI QVP SAIKVG
Sbjct: 68 KSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSSVSAIKVG 127
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLI---FRVTCSKGTYIRSLCADF 487
G + Y AR+G S++L R I I +F + + R LI + CS GTYIR+L D
Sbjct: 128 GRRAYRLARQGRSVQLEARPIRIDRFALL-AARRRDQLIDIDVEIDCSSGTYIRALARDL 186
Query: 488 GKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
G ALG H+TALRR +G++ D A +L E
Sbjct: 187 GDALGVGGHVTALRRTRVGRFELDQARSLDDLAE 220
>gi|374386616|ref|ZP_09644115.1| tRNA pseudouridine synthase B [Odoribacter laneus YIT 12061]
gi|373223789|gb|EHP46134.1| tRNA pseudouridine synthase B [Odoribacter laneus YIT 12061]
Length = 233
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 93/215 (43%), Positives = 135/215 (62%), Gaps = 6/215 (2%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVK----KVGHAGTLDPMATGLLIVCVGKATKLVD 364
G +VLV+KP WTSF V K+R ++ K KVGHAGTLDP+ATGL+I+C+GK TK ++
Sbjct: 13 GALVLVDKPLKWTSFDVVNKIRWCLRKKYGKLKVGHAGTLDPLATGLVIICIGKWTKEIE 72
Query: 365 RYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMF 424
RY G K Y LG T ++D ++ + PWEHI E K F GEI Q+PP++
Sbjct: 73 RYMGQQKEYLARICLGATTPSFDLETEINANYPWEHITRESFEKVLLQFVGEIQQIPPVY 132
Query: 425 SAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLC 484
SA+++ G + Y+KAR+G+ E+ PR + I + ++ + + R+ C KGTYIRSL
Sbjct: 133 SAVRIDGVRAYEKARKGKGPEMLPREVYIKEIEVVNF--ELPYVELRIVCGKGTYIRSLA 190
Query: 485 ADFGKALGSCAHLTALRRDSIGQYSADDAWEFKEL 519
D GKA GS +L+ LRR IG++ + A + ++L
Sbjct: 191 HDIGKACGSGGYLSDLRRTRIGEFQVEKANKMEDL 225
>gi|386852144|ref|YP_006270157.1| tRNA pseudouridine synthase B [Actinoplanes sp. SE50/110]
gi|359839648|gb|AEV88089.1| tRNA pseudouridine synthase B [Actinoplanes sp. SE50/110]
Length = 288
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 95/216 (43%), Positives = 131/216 (60%), Gaps = 10/216 (4%)
Query: 313 LVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKG 372
+V+KP G TS V ++RRL K ++VGH GTLDPMATG+LI+ V +AT+L+ G K
Sbjct: 1 MVDKPSGMTSHDVVARIRRLAKTRRVGHGGTLDPMATGVLIIGVNRATRLLTYVIGAEKS 60
Query: 373 YSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGE 432
Y+ RLGEAT T DA+ V P + D IR A+ GEI QVP SAIK+ GE
Sbjct: 61 YAATIRLGEATVTDDAEGEVTATVPVAGVADAAIRAGLAAQVGEIDQVPSAVSAIKINGE 120
Query: 433 KMYDKARRGESIELSPRRISIFQFDIERSLEDRQ-------NLIFRVTCSKGTYIRSLCA 485
+ Y + R GE++ + RR+++F+ D+ L+ R+ ++ VTCS GTYIR++
Sbjct: 121 RAYKRVRDGETVAIPARRVTVFRLDV---LDIRRPADRDVIDVDVDVTCSSGTYIRAIAR 177
Query: 486 DFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
D G ALG HLTALRR ++G + A +EL E
Sbjct: 178 DLGTALGVGGHLTALRRTAVGAMTLAAASTLEELAE 213
>gi|118464111|ref|YP_882859.1| tRNA pseudouridine synthase B [Mycobacterium avium 104]
gi|189036542|sp|A0QIX1.1|TRUB_MYCA1 RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|118165398|gb|ABK66295.1| tRNA pseudouridine synthase B [Mycobacterium avium 104]
Length = 309
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 92/219 (42%), Positives = 133/219 (60%), Gaps = 2/219 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G TS V G+ RR+ ++VGHAGTLDPMATG+L++ V +ATK++
Sbjct: 6 LVVVDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVLGVERATKILGLLTAAA 65
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K YS RLG+ATST DA+ V++ H+ + I A RG+I QVP SAIKV
Sbjct: 66 KSYSATIRLGQATSTDDAEGDVVRSVDARHLTSQAIEAAVGGLRGDIHQVPSTVSAIKVA 125
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIE--RSLEDRQNLIFRVTCSKGTYIRSLCADFG 488
G++ Y R G+++EL R + I +F++ R+ + ++ V CS GTY+R+L D G
Sbjct: 126 GKRAYKLVREGQAVELPARPVRIDRFEVRDLRAAGECVDVDVEVDCSSGTYVRALARDLG 185
Query: 489 KALGSCAHLTALRRDSIGQYSADDAWEFKELEEAITKNY 527
ALG HLTALRR +G++ + A+ EL E +Y
Sbjct: 186 AALGVGGHLTALRRTRVGRFGLEQAYGLDELAECPRLSY 224
>gi|228470915|ref|ZP_04055760.1| tRNA pseudouridine synthase B [Porphyromonas uenonis 60-3]
gi|228307312|gb|EEK16326.1| tRNA pseudouridine synthase B [Porphyromonas uenonis 60-3]
Length = 254
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 93/221 (42%), Positives = 136/221 (61%), Gaps = 8/221 (3%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLV------KVKKVGHAGTLDPMATGLLIVCVGKATKL 362
G ++ ++KP GWTSF V KLR +V K KVGHAGTLDP ATG+L++C G+ATKL
Sbjct: 26 GAIIPLDKPLGWTSFDVVNKLRIMVRQVTGIKRIKVGHAGTLDPQATGVLVLCTGRATKL 85
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
+++ K Y +LG T ++D++ + P+EHI +E +R F GEI Q PP
Sbjct: 86 IEQLMDHDKEYCATLQLGATTPSFDSEHEIDATYPYEHITEEMVRSTLHQFTGEIDQRPP 145
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRS 482
FSA+KVGG + YD AR+G+ +EL+ + ++I + ++ +L R+ CS+GTYIRS
Sbjct: 146 SFSAVKVGGIRAYDLARQGQEVELAHKHVTIHELELVSFTPP--SLQLRIVCSRGTYIRS 203
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
L D G AL S A+LT L R G+ S + + +L+E +
Sbjct: 204 LARDLGTALDSGAYLTQLVRTRSGEISQANCFSLDQLDELL 244
>gi|397679918|ref|YP_006521453.1| tRNA pseudouridine synthase B [Mycobacterium massiliense str. GO
06]
gi|395458183|gb|AFN63846.1| tRNA pseudouridine synthase B [Mycobacterium massiliense str. GO
06]
Length = 313
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 94/217 (43%), Positives = 129/217 (59%), Gaps = 3/217 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G TS V + RR+ +KVGHAGTLDPMATG+L++ + +ATK++
Sbjct: 25 LVIVDKPAGMTSHDVVSRCRRIFSTRKVGHAGTLDPMATGVLVIGIERATKIMGLLTLTT 84
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y+ R G++TST DA+ V+Q H+ + DI A A RG+I QVP SAIKV
Sbjct: 85 KSYAATIRFGQSTSTDDAEGEVLQTISASHLTEVDIEAAVAGLRGDIAQVPSSVSAIKVD 144
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLI---FRVTCSKGTYIRSLCADF 487
G++ Y AR G+S+EL+ R + I +FD+ L+ V CS GTYIR+L D
Sbjct: 145 GQRAYKLAREGQSVELAARPVHISRFDVLGVRHPDDGLVDVDVEVDCSSGTYIRALARDA 204
Query: 488 GKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAIT 524
G ALG HLTALRR +G + D A + L + T
Sbjct: 205 GAALGVGGHLTALRRTRVGDFGLDRARALEALADEAT 241
>gi|339624985|ref|ZP_08660774.1| pseudouridine synthase [Fructobacillus fructosus KCTC 3544]
Length = 304
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 96/215 (44%), Positives = 134/215 (62%), Gaps = 6/215 (2%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++VNKPK TSF V +LRR+ +K+GHAGTLDP G+L+V +GKATKL+D Q
Sbjct: 11 LLVVNKPKNMTSFGVVARLRRISGQRKIGHAGTLDPNVDGVLVVALGKATKLIDLLQSRP 70
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPW-EHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y+G G AT + DAD V+ +EP E I E + A S G+I Q+PP++SA+KV
Sbjct: 71 KTYTGTVTFGFATESQDADGAVVAKEPLTEAIDGEKLAAAFQSLEGDIIQIPPIYSAVKV 130
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIERSL-----EDRQNLIFRVTCSKGTYIRSLC 484
G+++Y+ AR GE++EL R +I+ F SL + Q + F T SKGTYIR+L
Sbjct: 131 KGKRLYEYARAGETVELPERAATIYHFKPTSSLRWVANQPYQAIDFEATVSKGTYIRTLA 190
Query: 485 ADFGKALGSCAHLTALRRDSIGQYSADDAWEFKEL 519
D G+ LG A +T+L R S +S D+A + EL
Sbjct: 191 YDLGQKLGLPATMTSLTRQSGSGFSIDEATDLAEL 225
>gi|227833348|ref|YP_002835055.1| tRNA pseudouridine synthase B [Corynebacterium aurimucosum ATCC
700975]
gi|262184334|ref|ZP_06043755.1| tRNA pseudouridine synthase B [Corynebacterium aurimucosum ATCC
700975]
gi|254764883|sp|C3PH13.1|TRUB_CORA7 RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|227454364|gb|ACP33117.1| tRNA pseudouridine synthase B [Corynebacterium aurimucosum ATCC
700975]
Length = 297
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 94/214 (43%), Positives = 129/214 (60%), Gaps = 2/214 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G TS V GKLRR + +KVGHAGTLDPMATG+L+V + + TK +
Sbjct: 10 LVVVDKPAGMTSHDVVGKLRRFFRTRKVGHAGTLDPMATGVLVVGIERGTKFLAHMVAST 69
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y RLG AT T DA+ EP ++D I + A+ G+I Q P SAIKV
Sbjct: 70 KAYDATIRLGTATHTDDAEGEATWGEPATAVEDSAIAREIAALTGDIMQRPAAVSAIKVD 129
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQ--NLIFRVTCSKGTYIRSLCADFG 488
G++ +++ R GE +EL R +++ +FDI + + + +L V CS GTYIRSL D G
Sbjct: 130 GKRAHERVRAGEEVELPARPVTVSRFDILATRREGEFIDLDVSVACSSGTYIRSLARDLG 189
Query: 489 KALGSCAHLTALRRDSIGQYSADDAWEFKELEEA 522
+ALG HLTALRR +G + DDA LE++
Sbjct: 190 EALGVGGHLTALRRTEVGPFRLDDAHPLDALEDS 223
>gi|389865980|ref|YP_006368221.1| tRNA pseudouridine synthase B [Modestobacter marinus]
gi|388488184|emb|CCH89755.1| tRNA pseudouridine synthase B [Modestobacter marinus]
Length = 306
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 93/212 (43%), Positives = 128/212 (60%), Gaps = 3/212 (1%)
Query: 310 TMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGM 369
+++LV+KP G TS V RR++ V+KVGHAGTLDPMATGLL++ VG AT+L+ G
Sbjct: 13 SLLLVDKPAGMTSHDVVAVARRVLSVRKVGHAGTLDPMATGLLVLGVGAATRLLGHLSGS 72
Query: 370 IKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y RLG++T T DA+ V + ++D+R A A+ G + QVP SA+KV
Sbjct: 73 DKTYDATVRLGQSTVTDDAEGEVTATTSAAGVGEDDVRAALAAQVGALQQVPSSVSAVKV 132
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLI---FRVTCSKGTYIRSLCAD 486
GG + YD+ R GE EL+ R +++ + D+ R L+ V CS GTYIR++ D
Sbjct: 133 GGRRSYDRVRAGEEFELAARSVTVHRIDVHRVGRPTPELLDVDVTVACSTGTYIRAIARD 192
Query: 487 FGKALGSCAHLTALRRDSIGQYSADDAWEFKE 518
G ALG HLTALRR S G +S D A ++
Sbjct: 193 VGAALGVGGHLTALRRTSSGPFSIDRARPVED 224
>gi|406673223|ref|ZP_11080447.1| tRNA pseudouridine synthase B [Bergeyella zoohelcum CCUG 30536]
gi|405586685|gb|EKB60435.1| tRNA pseudouridine synthase B [Bergeyella zoohelcum CCUG 30536]
Length = 232
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 98/214 (45%), Positives = 133/214 (62%), Gaps = 10/214 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGK----LRRLVKVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G ++LV+KP WTSF K L+R K+KK VGHAGTLDP ATGLLIVC+GKATK
Sbjct: 9 GQILLVDKPIDWTSFQAVNKIKFKLKREYKLKKIKVGHAGTLDPKATGLLIVCIGKATKQ 68
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
+ Q K Y +LG T+++D + P I +P + I ++ + + F G+I Q+PP
Sbjct: 69 ISEIQDAPKEYVAEIKLGAQTTSYDTEKPEILHQPIDEITEDKVTQTLEKFMGDIMQIPP 128
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQF-DIERSLEDRQNLIFRVTCSKGTYIR 481
+FSA+K+ GE+ Y+ AR GE I + R+I+I DI+ + F V CSKGTYIR
Sbjct: 129 VFSALKIDGERAYELARAGEEIAMKSRKITIHYIKDIKIHFP---FVTFTVGCSKGTYIR 185
Query: 482 SLCADFGKALGSCAHLTALRRDSIGQYSADDAWE 515
SL D G+ALG A+L+ LRR IG Y ++A E
Sbjct: 186 SLAHDIGQALGVGAYLSQLRRTKIGDYHIEEASE 219
>gi|284992344|ref|YP_003410898.1| tRNA pseudouridine synthase B [Geodermatophilus obscurus DSM 43160]
gi|284065589|gb|ADB76527.1| tRNA pseudouridine synthase B [Geodermatophilus obscurus DSM 43160]
Length = 304
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 88/211 (41%), Positives = 128/211 (60%), Gaps = 3/211 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++LV+KP G TS V + RR++ V++VGHAGTLDPMATGLL++ VG AT+L+ G
Sbjct: 13 LLLVDKPGGMTSHDVVARARRVLSVRRVGHAGTLDPMATGLLVLGVGTATRLLGHVGGHD 72
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y RLG+ T T D + V+ P H+ D+ + A A+ G + QVP SA+KV
Sbjct: 73 KTYEATIRLGQTTVTDDREGEVLVTTPAGHLDDDAVTAALAAQTGPLLQVPSSVSAVKVA 132
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLI---FRVTCSKGTYIRSLCADF 487
G + YD+ R GE + L PR +++ + D+ R +L+ V+C+ GTY+R++ D
Sbjct: 133 GRRSYDRVRAGEEVVLEPRAVTVHRLDVHRVTRPAPDLVDVDVTVSCTAGTYVRAIARDA 192
Query: 488 GKALGSCAHLTALRRDSIGQYSADDAWEFKE 518
G ALG HLTALRR + G +S +A +E
Sbjct: 193 GAALGVGGHLTALRRTASGPFSVTEAAAVEE 223
>gi|389807675|ref|ZP_10204212.1| tRNA pseudouridine synthase B [Rhodanobacter thiooxydans LCS2]
gi|388443800|gb|EIL99935.1| tRNA pseudouridine synthase B [Rhodanobacter thiooxydans LCS2]
Length = 308
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 93/216 (43%), Positives = 129/216 (59%), Gaps = 2/216 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+VL++KP G +S +RRL++ K GH G LDP+ATGLL +C G+ATKL G
Sbjct: 15 IVLLDKPPGLSSNQALQTVRRLLRASKGGHTGALDPLATGLLPLCFGEATKLAGSLLGAR 74
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y RLG T T D++ V+Q+ P + D + A A RG I QVPPM+SA+K G
Sbjct: 75 KAYLAECRLGVTTDTADSEGEVVQQRPVPELDDARVEAALARLRGRILQVPPMYSALKQG 134
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKA 490
GE++Y KARRGE++EL+PR + + + ++ D L RV C GTY+RSL D G+
Sbjct: 135 GERLYAKARRGETVELAPREVEVHRLELLAREGD--TLQLRVECGSGTYVRSLAVDLGED 192
Query: 491 LGSCAHLTALRRDSIGQYSADDAWEFKELEEAITKN 526
LG AHLTALRR + + +LE+A+ +
Sbjct: 193 LGCGAHLTALRRIWVEPFREPRMVTLTQLEQAVEQG 228
>gi|357019234|ref|ZP_09081489.1| tRNA pseudouridine synthase B [Mycobacterium thermoresistibile ATCC
19527]
gi|356480992|gb|EHI14105.1| tRNA pseudouridine synthase B [Mycobacterium thermoresistibile ATCC
19527]
Length = 301
Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 96/225 (42%), Positives = 134/225 (59%), Gaps = 13/225 (5%)
Query: 307 PFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRY 366
P +V+V+KP G TS V G+ RRL +KVGHAGTLDPMATG+L++ + +ATK++
Sbjct: 5 PPAGLVVVDKPGGLTSHDVVGRCRRLFGTRKVGHAGTLDPMATGVLVIGIERATKILGLL 64
Query: 367 QGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSA 426
K YS RLG++TST DA+ ++Q H+ D +I A + RG+I QVP SA
Sbjct: 65 AAGDKSYSATIRLGQSTSTDDAEGELLQTVSAIHLTDAEIEAAVGALRGDIEQVPSAVSA 124
Query: 427 IKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQN----------LIFRVTCSK 476
+K+GG++ Y AR G +EL+PR + I +F++ L R + + V CS
Sbjct: 125 VKIGGQRAYKLAREGRRVELAPRPVRIDRFEV---LAIRHHETTPGDGVVDVDVEVDCST 181
Query: 477 GTYIRSLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
GTYIR+L D G ALG HLT LRR +G++ D+A EL E
Sbjct: 182 GTYIRALARDVGAALGVGGHLTVLRRTRVGRFGLDEARTLDELAE 226
>gi|158313038|ref|YP_001505546.1| tRNA pseudouridine synthase B [Frankia sp. EAN1pec]
gi|158108443|gb|ABW10640.1| tRNA pseudouridine synthase B [Frankia sp. EAN1pec]
Length = 313
Score = 182 bits (462), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 101/248 (40%), Positives = 141/248 (56%), Gaps = 17/248 (6%)
Query: 279 VPNKENEVGSGEPYIVSRST--ELPPTWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVK 336
+P+ E +G P R T E P DG +V+V+KP GWTS V + RRL+ +
Sbjct: 1 MPSSERPTAAGRPTAAGRPTAAERPAAVDG----LVVVDKPAGWTSHDVVARSRRLLGTR 56
Query: 337 KVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQRE 396
++GHAGTLDPMATG+L++ VG+ T+L+ R K Y RLG T+T DA+ +
Sbjct: 57 RIGHAGTLDPMATGVLVLGVGRGTRLLGRLALTAKVYEATIRLGRTTTTDDAEGDPVADR 116
Query: 397 PWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEKMYDKARRGESIELSPRRISIFQF 456
P + + + A A GEI QVP SA+KV G + YD+ R GE + L+PRR+++ +F
Sbjct: 117 PVD-VGAGPLAAAMAELTGEIDQVPSSVSAVKVAGVRAYDRVRAGEEVTLAPRRVTVGRF 175
Query: 457 DIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKALGSCAHLTALRRDSIGQYSADDAWEF 516
++ + +L V CS GTYIR+L D G ALG AHLTALRR +G +
Sbjct: 176 ELL-ARRGETDLDVVVACSSGTYIRALARDLGAALGCGAHLTALRRTEVGPFG------- 227
Query: 517 KELEEAIT 524
L EA+T
Sbjct: 228 --LAEAVT 233
>gi|404446047|ref|ZP_11011171.1| tRNA pseudouridine synthase B [Mycobacterium vaccae ATCC 25954]
gi|403651075|gb|EJZ06241.1| tRNA pseudouridine synthase B [Mycobacterium vaccae ATCC 25954]
Length = 302
Score = 182 bits (462), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 97/216 (44%), Positives = 132/216 (61%), Gaps = 8/216 (3%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G TS + G+ R L +KVGHAGTLDPMATG+LIV + +ATK++
Sbjct: 15 LVVVDKPGGMTSHDIVGRCRTLFGTRKVGHAGTLDPMATGVLIVGIERATKILGLLTATD 74
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y+ RLG+ TST DA+ ++Q P + DE I A A RG+I QVP SAIKV
Sbjct: 75 KSYTATIRLGQTTSTEDAEGELLQSVPAASVTDEQIEAAIAPLRGQISQVPSAVSAIKVD 134
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQ-----NLIFRVTCSKGTYIRSLCA 485
G++ Y R G+++EL+ R + I +FD+ LE R+ ++ V CS GTYIR+L
Sbjct: 135 GKRAYQMVREGQAVELAARPVRIDRFDV---LEVRRAGDLVDVDVAVDCSSGTYIRALAR 191
Query: 486 DFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
D G ALG HLTALRR +G + D A ++L E
Sbjct: 192 DVGAALGVGGHLTALRRTRVGGFGLDQARTLEQLAE 227
>gi|421860634|ref|ZP_16292740.1| pseudouridine synthase [Paenibacillus popilliae ATCC 14706]
gi|410829820|dbj|GAC43177.1| pseudouridine synthase [Paenibacillus popilliae ATCC 14706]
Length = 305
Score = 182 bits (462), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 92/215 (42%), Positives = 131/215 (60%), Gaps = 2/215 (0%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
V KP GWTS V K+RRL++ K++GH GTLDP G+L +CVG+AT+LV+ Q M K Y
Sbjct: 11 VWKPAGWTSHDVVAKVRRLIREKRIGHTGTLDPQVVGVLPLCVGRATRLVEYLQEMPKEY 70
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEK 433
RLG +T T D V++R H+ + I +A SF G I QVPPM+SA+KV G++
Sbjct: 71 EATLRLGVSTDTEDMSGEVVERADASHVTEAMIAEALLSFIGPIEQVPPMYSAVKVNGKR 130
Query: 434 MYDKARRGESIELSPRRISIFQFD-IERSLEDRQNLI-FRVTCSKGTYIRSLCADFGKAL 491
+Y+ AR G+++E PR+++I I L D + + FRV CSKGTYIR+LC D G+ L
Sbjct: 131 LYELAREGKTVERKPRQVTIHHIKLIGLRLGDVEPEVRFRVQCSKGTYIRTLCVDIGRKL 190
Query: 492 GSCAHLTALRRDSIGQYSADDAWEFKELEEAITKN 526
G A + L R + +D+ F ++E +
Sbjct: 191 GVPATMAKLIRTRSANFGQEDSVTFTQIEAGMAAG 225
>gi|407983204|ref|ZP_11163861.1| tRNA pseudouridine(55) synthase [Mycobacterium hassiacum DSM 44199]
gi|407375097|gb|EKF24056.1| tRNA pseudouridine(55) synthase [Mycobacterium hassiacum DSM 44199]
Length = 293
Score = 182 bits (462), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 94/211 (44%), Positives = 131/211 (62%), Gaps = 2/211 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G TS V G+ RR+ +KVGHAGTLDPMATG+L+V + +ATK++
Sbjct: 6 LVVVDKPAGMTSHDVVGRCRRIFGTRKVGHAGTLDPMATGVLVVGIDRATKILGLLTATD 65
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y+ RLG+ TST DA+ ++Q + DE I A + RGEI QVP SAIKV
Sbjct: 66 KSYTATIRLGQTTSTDDAEGELLQEVSARSVTDEQIGAAVGALRGEIDQVPSAVSAIKVD 125
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIE--RSLEDRQNLIFRVTCSKGTYIRSLCADFG 488
G++ Y AR+G S+EL RR+ I +F++ R + ++ V CS GTYIR+L D G
Sbjct: 126 GKRAYQLARQGRSVELKARRVRIERFEVTGIRRHGEVVDVDVEVDCSSGTYIRALARDIG 185
Query: 489 KALGSCAHLTALRRDSIGQYSADDAWEFKEL 519
LG HLTALRR ++G++ + A +EL
Sbjct: 186 AGLGVGGHLTALRRTAVGRFGLEQARTLEEL 216
>gi|423317400|ref|ZP_17295305.1| tRNA pseudouridine synthase B [Bergeyella zoohelcum ATCC 43767]
gi|405581286|gb|EKB55321.1| tRNA pseudouridine synthase B [Bergeyella zoohelcum ATCC 43767]
Length = 232
Score = 182 bits (461), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 98/214 (45%), Positives = 133/214 (62%), Gaps = 10/214 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGK----LRRLVKVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G ++LV+KP WTSF K L+R K+KK VGHAGTLDP ATGLLIVC+GKATK
Sbjct: 9 GQILLVDKPIDWTSFQAVNKIKFKLKREYKLKKIKVGHAGTLDPKATGLLIVCIGKATKQ 68
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
+ Q K Y +LG T+++D + P I +P + I ++ + + F G+I Q+PP
Sbjct: 69 ISEIQDAPKEYVAEIKLGVQTTSYDTEKPEILHQPIDEITEDKVTQTLEKFMGDIMQIPP 128
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQF-DIERSLEDRQNLIFRVTCSKGTYIR 481
+FSA+K+ GE+ Y+ AR GE I + R+I+I DI+ + F V CSKGTYIR
Sbjct: 129 VFSALKIDGERAYELARAGEEIAMKARKITIHYIKDIKIHFP---FVTFTVGCSKGTYIR 185
Query: 482 SLCADFGKALGSCAHLTALRRDSIGQYSADDAWE 515
SL D G+ALG A+L+ LRR IG Y ++A E
Sbjct: 186 SLAHDIGQALGVGAYLSQLRRTKIGDYHIEEASE 219
>gi|297569832|ref|YP_003691176.1| tRNA pseudouridine synthase B [Desulfurivibrio alkaliphilus AHT2]
gi|296925747|gb|ADH86557.1| tRNA pseudouridine synthase B [Desulfurivibrio alkaliphilus AHT2]
Length = 241
Score = 182 bits (461), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 94/209 (44%), Positives = 127/209 (60%), Gaps = 1/209 (0%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGK-ATKLVDRYQGMIKG 372
V+KP G +SF + +RR +KKVGHAGTLDP A+GLL+VC+G+ AT+LVDR K
Sbjct: 9 VDKPAGPSSFRMVQLVRRATGIKKVGHAGTLDPFASGLLLVCIGRPATRLVDRLMVGDKE 68
Query: 373 YSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGE 432
Y +LG T+T D + ++ R P + + A +FRGE+WQ PP FSA K G+
Sbjct: 69 YEATVQLGVTTATHDPEGEILDRRPVTAAHFDALEAALDNFRGELWQSPPAFSAAKHQGK 128
Query: 433 KMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKALG 492
+Y ARRGE I PRR+ I + ++ + ++ RV CSKGTYIRSL D G+ALG
Sbjct: 129 PLYSYARRGEMISKPPRRVLIHRLEVVSRDHRQHRVVLRVCCSKGTYIRSLAHDLGQALG 188
Query: 493 SCAHLTALRRDSIGQYSADDAWEFKELEE 521
AHL ALRR + G + + A + L E
Sbjct: 189 CGAHLAALRRLASGDFRVEQALAGERLLE 217
>gi|423330244|ref|ZP_17308028.1| tRNA pseudouridine synthase B [Parabacteroides distasonis
CL03T12C09]
gi|409231860|gb|EKN24708.1| tRNA pseudouridine synthase B [Parabacteroides distasonis
CL03T12C09]
Length = 235
Score = 182 bits (461), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 96/224 (42%), Positives = 136/224 (60%), Gaps = 8/224 (3%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR----RLVKVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G ++ NKP WTSF + K R R +KVKK VGHAGTLDP+ATG++IVC G+ATK
Sbjct: 6 GEILYFNKPLTWTSFDLVNKFRYKLSRKLKVKKIKVGHAGTLDPLATGVMIVCTGRATKR 65
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
+D +Q K Y +LGE T ++D + + P EHI E + + +F G I Q+PP
Sbjct: 66 IDEFQYQTKEYIATLKLGETTPSFDLEKEIDAVYPTEHITRELVEEVLKTFVGTIQQIPP 125
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRS 482
+FSA K+ G++ Y+ AR+GE +EL + + I + ++ D + RV CSKGTYIR+
Sbjct: 126 VFSACKIEGKRAYELARKGEEVELKSKTLVIDELELLEC--DLPVIKIRVVCSKGTYIRA 183
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAITKN 526
L D GKAL S AHL L R IG+ + D +E+++ + KN
Sbjct: 184 LARDIGKALNSGAHLIGLERTRIGEVTLDMCMSPEEIDDFLEKN 227
>gi|419709646|ref|ZP_14237114.1| tRNA pseudouridine synthase B [Mycobacterium abscessus M93]
gi|382943527|gb|EIC67841.1| tRNA pseudouridine synthase B [Mycobacterium abscessus M93]
Length = 298
Score = 182 bits (461), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 97/217 (44%), Positives = 133/217 (61%), Gaps = 3/217 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G TS V + RR+ +KVGHAGTLDPMATG+L++ + +ATK++
Sbjct: 10 LVIVDKPAGMTSHDVVSRCRRIFSTRKVGHAGTLDPMATGVLVIGIERATKIMGLLTLTT 69
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y+ R G++TST DA+ V+Q H+ + DI A A RG+I QVP SAIKV
Sbjct: 70 KSYAATIRFGQSTSTDDAEGEVLQTISASHLTEVDIEAAVAGLRGDIAQVPSSVSAIKVD 129
Query: 431 GEKMYDKARRGESIELSPRRISIFQFD---IERSLEDRQNLIFRVTCSKGTYIRSLCADF 487
G++ Y AR G+S+EL+ R + I +FD + S ED ++ V CS GTYIR+L D
Sbjct: 130 GQRAYKLAREGQSVELAARPVRISRFDVLAVRGSGEDLVDVDVEVDCSSGTYIRALARDA 189
Query: 488 GKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAIT 524
G ALG HLTALRR +G + D A +EL + T
Sbjct: 190 GAALGVGGHLTALRRTRVGDFGLDRARTLEELADGAT 226
>gi|398814368|ref|ZP_10573049.1| tRNA pseudouridine 55 synthase [Brevibacillus sp. BC25]
gi|398036637|gb|EJL29846.1| tRNA pseudouridine 55 synthase [Brevibacillus sp. BC25]
Length = 308
Score = 181 bits (460), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 93/215 (43%), Positives = 137/215 (63%), Gaps = 4/215 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++++KP G TS ++RRL KKVGH GTLDP TG+L +CVG AT+LV+ Q +
Sbjct: 7 VLVIDKPAGMTSHDCVARIRRLYGTKKVGHTGTLDPDVTGVLPICVGHATRLVEYLQELP 66
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWE--HIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
K Y V RLG T+T DA V+++ + I E I+ SF GE+ QVPPMFSA+K
Sbjct: 67 KRYDVVMRLGSTTTTEDASGEVVEQAGVDAASITTERIQALFESFLGEMEQVPPMFSAVK 126
Query: 429 VGGEKMYDKARRGESIELSPRRISIFQFDIER-SLE-DRQNLIFRVTCSKGTYIRSLCAD 486
V G+++YD AR G IE R++++++ + + S++ D ++ F TCSKGTY+R+LC D
Sbjct: 127 VNGKRLYDLAREGTVIERQARKVTLYELTLHKISVDGDTVDVAFTCTCSKGTYMRTLCVD 186
Query: 487 FGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
G+ALG AH+ LRR G + +A +++EE
Sbjct: 187 LGRALGYPAHMKLLRRIKSGPFQEQEAIPLQQIEE 221
>gi|333991189|ref|YP_004523803.1| tRNA pseudouridine synthase B TruB [Mycobacterium sp. JDM601]
gi|333487157|gb|AEF36549.1| tRNA pseudouridine synthase B TruB [Mycobacterium sp. JDM601]
Length = 292
Score = 181 bits (460), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 96/213 (45%), Positives = 127/213 (59%), Gaps = 2/213 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G TS V + RR +KVGHAGTLDPMATG+L+V + +ATK++
Sbjct: 5 LVVVDKPAGITSHDVVARCRRFFGTRKVGHAGTLDPMATGVLVVGIERATKILGLLTTSS 64
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y+ RLG+ TST DA+ V+Q +H+ D I +A A RG+I QVP SAIKV
Sbjct: 65 KSYAATIRLGQTTSTEDAEGEVLQTVSADHLTDSQIAEAIAGLRGDIAQVPSAVSAIKVS 124
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDI--ERSLEDRQNLIFRVTCSKGTYIRSLCADFG 488
G++ Y AR G ++EL R + I +F++ R D +L V CS GTYIR+L D G
Sbjct: 125 GKRSYQLAREGNAVELPARPVRIERFELLDARRAGDFIDLDVEVDCSAGTYIRALARDLG 184
Query: 489 KALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
LG HLTALRR G + D A +EL E
Sbjct: 185 DELGVGGHLTALRRTRAGSFGLDQARTLEELGE 217
>gi|308176809|ref|YP_003916215.1| tRNA pseudouridylate synthase B [Arthrobacter arilaitensis Re117]
gi|307744272|emb|CBT75244.1| tRNA pseudouridylate synthase B [Arthrobacter arilaitensis Re117]
Length = 307
Score = 181 bits (460), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 92/215 (42%), Positives = 129/215 (60%), Gaps = 4/215 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+VLV+K +G TS V G++RRL +KVGHAGTLDPMATG+L++ V KAT+L+ G
Sbjct: 15 LVLVDKDQGMTSHDVVGRIRRLAGTRKVGHAGTLDPMATGVLVIGVNKATRLLTYIVGHD 74
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y+ RLG+ T T DA+ +I + DEDI + A RG+I Q+P SAIKV
Sbjct: 75 KTYTATIRLGQNTVTDDAEGEIISERIAAAVSDEDIEREVAKLRGDIEQIPSSVSAIKVD 134
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIF----RVTCSKGTYIRSLCAD 486
G++ Y + R GE +EL R ++I +F+I + I V+C+ GTYIR+L D
Sbjct: 135 GKRSYARVRAGEQVELKARPVTISRFEIHEVRRENGGKILDVDVTVSCTSGTYIRALARD 194
Query: 487 FGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
G+AL HLTALRR +G Y + ++L +
Sbjct: 195 LGEALNVGGHLTALRRTEVGPYKIELTRTLEQLAQ 229
>gi|387876895|ref|YP_006307199.1| tRNA pseudouridine synthase B [Mycobacterium sp. MOTT36Y]
gi|386790353|gb|AFJ36472.1| tRNA pseudouridine synthase B [Mycobacterium sp. MOTT36Y]
Length = 296
Score = 181 bits (460), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 95/217 (43%), Positives = 130/217 (59%), Gaps = 7/217 (3%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP TS V G+ RR+ ++VGHAGTLDPMATG+L++ V +ATK++
Sbjct: 6 IVVVDKPPAMTSHDVVGRCRRIFSTRRVGHAGTLDPMATGVLVIGVERATKILGLLSASS 65
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y+ RLG++TST DA+ ++ P H+ E I A RG+I QVP SAIKVG
Sbjct: 66 KSYAATIRLGQSTSTDDAEGEPVRSVPAGHLTSEAIGTAVEGLRGDIAQVPSTVSAIKVG 125
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLE------DRQNLIFRVTCSKGTYIRSLC 484
G++ Y AR G ++EL R + I +FD+ R + D ++ V CS GTYIR+L
Sbjct: 126 GKRAYRLAREGHAVELEARPVRIDRFDV-RGVRPGPHGLDVLDVDVEVECSSGTYIRALA 184
Query: 485 ADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
D G ALG HLTALRR G++ D A+ EL E
Sbjct: 185 RDLGAALGVGGHLTALRRTRAGRFGLDQAYSLDELAE 221
>gi|262383901|ref|ZP_06077037.1| tRNA pseudouridine synthase B [Bacteroides sp. 2_1_33B]
gi|301312061|ref|ZP_07217983.1| tRNA pseudouridine synthase B [Bacteroides sp. 20_3]
gi|423339384|ref|ZP_17317125.1| tRNA pseudouridine synthase B [Parabacteroides distasonis
CL09T03C24]
gi|262294799|gb|EEY82731.1| tRNA pseudouridine synthase B [Bacteroides sp. 2_1_33B]
gi|300830163|gb|EFK60811.1| tRNA pseudouridine synthase B [Bacteroides sp. 20_3]
gi|409230765|gb|EKN23626.1| tRNA pseudouridine synthase B [Parabacteroides distasonis
CL09T03C24]
Length = 235
Score = 181 bits (459), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 96/224 (42%), Positives = 136/224 (60%), Gaps = 8/224 (3%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR----RLVKVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G ++ NKP WTSF + K R R +KVKK VGHAGTLDP+ATG++IVC G+ATK
Sbjct: 6 GEILYFNKPLTWTSFDLVNKFRYKLSRKLKVKKIKVGHAGTLDPLATGVMIVCTGRATKR 65
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
+D +Q K Y +LGE T ++D + + P EHI E + + +F G I Q+PP
Sbjct: 66 IDEFQYQTKEYIATLKLGETTPSFDLEKEIDAVYPTEHITRELVEEVLKTFVGTIQQIPP 125
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRS 482
+FSA K+ G++ Y+ AR+GE +EL + + I + ++ D + RV CSKGTYIR+
Sbjct: 126 VFSACKIEGKRAYELARKGEEVELKSKTLVIDELELLEC--DLPVIKIRVVCSKGTYIRA 183
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAITKN 526
L D GKAL S AHL L R IG+ + D +E+++ + KN
Sbjct: 184 LARDIGKALDSGAHLIGLERTRIGEVTLDMCMSPEEIDDFLEKN 227
>gi|373855001|ref|ZP_09597798.1| tRNA pseudouridine synthase B [Opitutaceae bacterium TAV5]
gi|372471783|gb|EHP31796.1| tRNA pseudouridine synthase B [Opitutaceae bacterium TAV5]
Length = 242
Score = 181 bits (459), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 93/211 (44%), Positives = 130/211 (61%), Gaps = 2/211 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L++KP TS V +LR ++ +K+VGHAGTLDPMATGLL+V VGKAT L
Sbjct: 11 VLLIDKPTDHTSHDVIARLRGILHMKRVGHAGTLDPMATGLLVVLVGKATSLSQYLMSAD 70
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
KGY+G LG+ T+T DA+ +++ P + + + A S G+ +Q+PPMFSAIK+
Sbjct: 71 KGYTGTVTLGKTTNTQDAEGEMLETRPVPPLTEAQVAAALRSMLGDQYQMPPMFSAIKID 130
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKA 490
G +Y AR+GE IE PR I + QFD+ R + FRV SKGTY+R+L D G
Sbjct: 131 GVPLYKSARKGEDIEREPRFIRVSQFDLTR--WQSPEIDFRVKVSKGTYVRTLAHDLGDK 188
Query: 491 LGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
LG HL+ALRR + G + D A + L++
Sbjct: 189 LGCGGHLSALRRTACGPLTIDRAVTLEALQK 219
>gi|452910831|ref|ZP_21959508.1| tRNA pseudouridine synthase B [Kocuria palustris PEL]
gi|452834003|gb|EME36807.1| tRNA pseudouridine synthase B [Kocuria palustris PEL]
Length = 329
Score = 181 bits (459), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 101/233 (43%), Positives = 132/233 (56%), Gaps = 9/233 (3%)
Query: 295 SRSTELP---PTWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGL 351
RS + P P+ P G +V+V+KPKGWTS V G++RRL +KVGHAGTLDPMATG+
Sbjct: 11 GRSAQTPRPDPSLTVPEG-LVVVDKPKGWTSHDVVGRMRRLCGTRKVGHAGTLDPMATGV 69
Query: 352 LIVCVGKATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQR---EPWEHIKDEDIRK 408
LIV VG+ TKL+ G K Y RLG T T DA+ + + DE IR
Sbjct: 70 LIVGVGRGTKLLTHLVGADKTYEATIRLGATTVTEDAEGELTGTADPSAVAAVTDEQIRA 129
Query: 409 AAASFRGEIWQVPPMFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNL 468
A A G++ QVP SAIKV G++ Y + R GE + L R I++ +FD+ DR L
Sbjct: 130 AVAELTGDLEQVPSAVSAIKVDGKRSYARVRAGEEVALEARPITVSRFDVTEIRRDRDAL 189
Query: 469 IFRVT--CSKGTYIRSLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKEL 519
S GTYIR++ D G+ALG HL+ALRR +G + A E + L
Sbjct: 190 ELDAVLDVSSGTYIRAIARDLGEALGIGGHLSALRRTRVGALGLEQARELEAL 242
>gi|392396813|ref|YP_006433414.1| tRNA pseudouridine 55 synthase [Flexibacter litoralis DSM 6794]
gi|390527891|gb|AFM03621.1| tRNA pseudouridine 55 synthase [Flexibacter litoralis DSM 6794]
Length = 240
Score = 181 bits (459), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 93/221 (42%), Positives = 140/221 (63%), Gaps = 8/221 (3%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVKK------VGHAGTLDPMATGLLIVCVGKATKL 362
G ++L++KP WTSF V K+R +K + VGHAGTLDP+ATGLLI+C GK TK
Sbjct: 11 GKVILIDKPLTWTSFDVVNKIRYTIKKYEQKKKVKVGHAGTLDPLATGLLILCSGKMTKQ 70
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ +QG K Y G T+++D +S + ++ + E I A F+GEI QVPP
Sbjct: 71 IEDFQGQEKEYIAKITFGFTTASYDLESDLENQKDVSALTLEKIETALKDFQGEIDQVPP 130
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDI-ERSLEDRQNLI-FRVTCSKGTYI 480
+FSA++V G++ Y AR+GE IEL R+++I + +I + +L + + +I R+ CSKGTYI
Sbjct: 131 IFSAVQVNGKRAYKSARQGEKIELKARKVTISELEILDSNLSENEAVISLRIVCSKGTYI 190
Query: 481 RSLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
RSL D G+ L + AHL+ L+R IG++ +DA ++ E
Sbjct: 191 RSLAHDLGQKLETGAHLSGLQRTKIGEFKIEDAQSIEQFLE 231
>gi|386725628|ref|YP_006191954.1| tRNA pseudouridine synthase B [Paenibacillus mucilaginosus K02]
gi|384092753|gb|AFH64189.1| tRNA pseudouridine synthase B [Paenibacillus mucilaginosus K02]
Length = 305
Score = 181 bits (459), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 93/212 (43%), Positives = 134/212 (63%), Gaps = 4/212 (1%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
V KP G+TS V K+RR++K+K++GH GTLDP TG+L +C+G+AT+LV+ Q + K Y
Sbjct: 9 VWKPAGFTSHDVVAKVRRILKIKRIGHTGTLDPQVTGVLPLCIGRATRLVEYIQELPKEY 68
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIK--DEDIRKAAASFRGEIWQVPPMFSAIKVGG 431
RLG AT T D V++ E +K E++ +A F GEI QVPPM+SA+KV G
Sbjct: 69 EATLRLGIATDTEDLSGSVLRTEDGLSLKLTPEEVTEAIHRFTGEIEQVPPMYSAVKVDG 128
Query: 432 EKMYDKARRGESIELSPRRISIFQFDIERS--LEDRQNLIFRVTCSKGTYIRSLCADFGK 489
+++YD AR+G +E RR++I + ++ + D + FRV CSKGTYIR+LC D G
Sbjct: 129 KRLYDLARQGVEVERKARRVTIHKIEVLSTDWTGDYPEVRFRVLCSKGTYIRTLCVDIGA 188
Query: 490 ALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
A+G A + L R S GQ A+ +++EE
Sbjct: 189 AIGVPAVMAELVRTSTGQIRAESCLTLEQIEE 220
>gi|373496222|ref|ZP_09586770.1| tRNA pseudouridine synthase B [Fusobacterium sp. 12_1B]
gi|404368916|ref|ZP_10974263.1| tRNA pseudouridine synthase B [Fusobacterium ulcerans ATCC 49185]
gi|313688211|gb|EFS25046.1| tRNA pseudouridine synthase B [Fusobacterium ulcerans ATCC 49185]
gi|371966133|gb|EHO83625.1| tRNA pseudouridine synthase B [Fusobacterium sp. 12_1B]
Length = 286
Score = 181 bits (459), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 94/210 (44%), Positives = 133/210 (63%), Gaps = 2/210 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ VNKP G TSF V KLRR++ +K+GH GTLDP+A G+L+VC+GKATK+V +G
Sbjct: 4 IINVNKPSGITSFDVVRKLRRILHERKIGHTGTLDPLAQGVLVVCIGKATKMVQDIEGYE 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y+ F LG T T+D + VI++ I + +++ +F GEI Q+PPM+SA+KV
Sbjct: 64 KTYTAGFELGYRTDTYDTEGQVIEKREVNDITLDKLQEVLKNFIGEIEQIPPMYSALKVD 123
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKA 490
G+K+Y+ AR+G IE R I I DI D R SKGTYIRSL D GKA
Sbjct: 124 GKKLYELARQGIEIERKARLIEIKSIDIIEF--DGVKGKIRCDVSKGTYIRSLIDDIGKA 181
Query: 491 LGSCAHLTALRRDSIGQYSADDAWEFKELE 520
LG+ A +T+L R+ +G S +++ +E+E
Sbjct: 182 LGTLATMTSLVREKVGSSSIKNSYTLEEIE 211
>gi|184201248|ref|YP_001855455.1| tRNA pseudouridine synthase B [Kocuria rhizophila DC2201]
gi|183581478|dbj|BAG29949.1| tRNA pseudouridine synthase TruB [Kocuria rhizophila DC2201]
Length = 379
Score = 181 bits (459), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 100/223 (44%), Positives = 133/223 (59%), Gaps = 10/223 (4%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP GWTS V ++RRL +KVGHAGTLDP A+G+L++ V KATKL+ G
Sbjct: 20 LVVVDKPLGWTSHDVVARMRRLAGTRKVGHAGTLDPAASGVLVIGVEKATKLLTWVTGTD 79
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIK---DEDIRKAAASFRGEIWQVPPMFSAI 427
K Y RLG AT T DA+ V + P E + DE + A A GEI QVP SAI
Sbjct: 80 KTYRAGIRLGAATVTDDAEGDVTRTAPPERLAGTTDEQVLAAVAQLTGEIQQVPSAVSAI 139
Query: 428 KVGGEKMYDKARRGESIELSPRRISIFQFDIE--RSLE--DRQNLI---FRVTCSKGTYI 480
KV G++ Y + R GE + L R +++ +F + R +E D Q I VTCS GTY+
Sbjct: 140 KVDGKRSYARVRGGEDVTLPARPVTVSEFAVHGIRRVEAADGQAFIDVDATVTCSSGTYV 199
Query: 481 RSLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
R+L D G+ALG HLTALRR +G ++ D A +EL E +
Sbjct: 200 RALARDLGEALGVGGHLTALRRTRVGTFTLDQAHTLEELTEQV 242
>gi|120403320|ref|YP_953149.1| tRNA pseudouridine synthase B [Mycobacterium vanbaalenii PYR-1]
gi|119956138|gb|ABM13143.1| tRNA pseudouridine synthase B [Mycobacterium vanbaalenii PYR-1]
Length = 302
Score = 181 bits (459), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 95/223 (42%), Positives = 131/223 (58%), Gaps = 2/223 (0%)
Query: 307 PFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRY 366
P +V+V+KP G TS V G+ RRL +KVGHAGTLDPMATG+L+V + +ATK++
Sbjct: 11 PAPGLVVVDKPGGMTSHDVVGRCRRLFGTRKVGHAGTLDPMATGVLVVGIERATKILGLL 70
Query: 367 QGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSA 426
K Y+ RLG+ TST DA+ V+Q + D I A A RG I Q+P SA
Sbjct: 71 TATDKSYAATIRLGQTTSTEDAEGEVLQSVSAAEVTDAQIEAAIAPLRGPIDQIPSAVSA 130
Query: 427 IKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQ--NLIFRVTCSKGTYIRSLC 484
IK+ G++ Y R G+++EL+ R + I +F++ D + ++ V CS GTYIR+L
Sbjct: 131 IKIAGKRAYQMVRDGQTVELAARPVRIDRFEVLEVRRDGELVDVDVAVDCSSGTYIRALA 190
Query: 485 ADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAITKNY 527
D G ALG HLTALRR +G + + A EL EA +Y
Sbjct: 191 RDVGAALGVGGHLTALRRTRVGGFGLEQARTLDELAEAPRLSY 233
>gi|337750000|ref|YP_004644162.1| tRNA pseudouridine synthase B [Paenibacillus mucilaginosus KNP414]
gi|379722851|ref|YP_005314982.1| tRNA pseudouridine synthase B [Paenibacillus mucilaginosus 3016]
gi|336301189|gb|AEI44292.1| tRNA pseudouridine synthase B [Paenibacillus mucilaginosus KNP414]
gi|378571523|gb|AFC31833.1| tRNA pseudouridine synthase B [Paenibacillus mucilaginosus 3016]
Length = 305
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 93/212 (43%), Positives = 134/212 (63%), Gaps = 4/212 (1%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
V KP G+TS V K+RR++K+K++GH GTLDP TG+L +C+G+AT+LV+ Q + K Y
Sbjct: 9 VWKPAGFTSHDVVAKVRRILKIKRIGHTGTLDPQVTGVLPLCIGRATRLVEYIQELPKEY 68
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIK--DEDIRKAAASFRGEIWQVPPMFSAIKVGG 431
RLG AT T D V++ E +K E++ +A F GEI QVPPM+SA+KV G
Sbjct: 69 EATLRLGIATDTEDLSGSVLRTEDGLSLKLTPEEVTEAIHRFTGEIEQVPPMYSAVKVDG 128
Query: 432 EKMYDKARRGESIELSPRRISIFQFDIERS--LEDRQNLIFRVTCSKGTYIRSLCADFGK 489
+++YD AR+G +E RR++I + ++ + D + FRV CSKGTYIR+LC D G
Sbjct: 129 KRLYDLARQGVEVERKARRVTIHKIEVLSTDWTGDYPEVRFRVLCSKGTYIRTLCVDIGA 188
Query: 490 ALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
A+G A + L R S GQ A+ +++EE
Sbjct: 189 AIGVPAVMAELVRTSTGQIRAESCLTLEQIEE 220
>gi|333384088|ref|ZP_08475732.1| tRNA pseudouridine synthase B [Dysgonomonas gadei ATCC BAA-286]
gi|332826969|gb|EGJ99766.1| tRNA pseudouridine synthase B [Dysgonomonas gadei ATCC BAA-286]
Length = 229
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 101/221 (45%), Positives = 134/221 (60%), Gaps = 8/221 (3%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR-----RL-VKVKKVGHAGTLDPMATGLLIVCVGKATKL 362
G ++ +NKP WTSF + KLR RL VK KVGHAGTLDP+ATG++I+C GK TKL
Sbjct: 6 GEVLYINKPLNWTSFDLVRKLRNKLCRRLGVKKLKVGHAGTLDPLATGVMIICTGKKTKL 65
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ +Q K Y RLGE T ++D ++ V P +HI +E + + F GEI QVPP
Sbjct: 66 IETFQYQTKEYIATIRLGETTPSFDLETEVDGIYPADHITEELVNQILTQFIGEIQQVPP 125
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRS 482
+SA KV G++ Y+ AR G+ +EL P+ + I + IE + RV CSKGTYIR+
Sbjct: 126 TYSACKVEGKRAYEFAREGQEVELKPKLLVIDE--IELLDYTMPEIKIRVVCSKGTYIRA 183
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
L D G AL S HLTAL R IG + D + +EEAI
Sbjct: 184 LARDIGLALSSGGHLTALERTRIGDITLDQCVAGERIEEAI 224
>gi|336398317|ref|ZP_08579117.1| tRNA pseudouridine synthase B [Prevotella multisaccharivorax DSM
17128]
gi|336068053|gb|EGN56687.1| tRNA pseudouridine synthase B [Prevotella multisaccharivorax DSM
17128]
Length = 229
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 86/218 (39%), Positives = 132/218 (60%), Gaps = 5/218 (2%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVK-----KVGHAGTLDPMATGLLIVCVGKATKLV 363
G ++ ++KP +SF R L+ KVGHAGTLDP+ATG+L++C G TK +
Sbjct: 6 GEIIAIDKPYRMSSFGALAHCRYLLSQAVGQKVKVGHAGTLDPLATGVLVLCTGHCTKQI 65
Query: 364 DRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPM 423
++ Q +K Y+ + +LG T+++D + + Q PW+HI E I + F G+I Q+PP
Sbjct: 66 EQLQSHMKEYTAILQLGATTASYDLEHEINQTYPWKHITREMILEILKKFTGDIEQIPPT 125
Query: 424 FSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSL 483
+SA+K+ G++ Y R+GE ++L P+ I I + ++ ED L RV C KGTYIR+L
Sbjct: 126 YSAVKISGDRAYKLRRQGEEVKLKPKHIHIDEIELTSFNEDNGQLSIRVVCGKGTYIRAL 185
Query: 484 CADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
D G+ALGS A+LTALRR +G + + +F +E
Sbjct: 186 ARDLGRALGSGAYLTALRRTRVGDITVNKCIDFDHFDE 223
>gi|410866703|ref|YP_006981314.1| tRNA pseudouridine synthase B [Propionibacterium acidipropionici
ATCC 4875]
gi|410823344|gb|AFV89959.1| tRNA pseudouridine synthase B [Propionibacterium acidipropionici
ATCC 4875]
Length = 295
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 92/201 (45%), Positives = 127/201 (63%), Gaps = 2/201 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++V+KP+GWTS V ++RRL +KVGHAGTLDPMATG+L+V VG+AT+L+
Sbjct: 8 LLIVDKPQGWTSHQVVARVRRLRGTRKVGHAGTLDPMATGVLVVGVGRATRLLGHLALHD 67
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y+ RLG T T DA+ V+ E + + I +A A RG+I QVP SAIKV
Sbjct: 68 KDYTATIRLGVTTVTDDAEGDVLAAEDASGLTEAGIGEAMAPLRGDILQVPTAVSAIKVN 127
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQ--NLIFRVTCSKGTYIRSLCADFG 488
G++ Y + R GE + L PR +++ +F+ D Q ++ VTCS GTY+R+L D G
Sbjct: 128 GQRAYKRVRAGEDVVLEPRPVTVSRFEAVGMRHDGQAVDVDVEVTCSSGTYVRALARDLG 187
Query: 489 KALGSCAHLTALRRDSIGQYS 509
+ALG HLTALRR IG Y+
Sbjct: 188 EALGVGGHLTALRRTRIGPYA 208
>gi|380693038|ref|ZP_09857897.1| tRNA pseudouridine synthase B [Bacteroides faecis MAJ27]
Length = 240
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 99/226 (43%), Positives = 137/226 (60%), Gaps = 8/226 (3%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR----RLVKVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G ++ NKP GWTSF V G +R R + VKK VGHAGTLDP+ATG++IVC GKATK
Sbjct: 6 GEVLFFNKPLGWTSFKVVGHVRYHICRRIGVKKLKVGHAGTLDPLATGVMIVCTGKATKR 65
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ +Q K Y RLG T ++D + + P EHI E + + F G I QVPP
Sbjct: 66 IEEFQYHTKEYVATLRLGATTPSYDLEHEIDATYPTEHITRELVEETLTHFLGAIEQVPP 125
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFD-IERSLEDRQNLI-FRVTCSKGTYI 480
FSA V G++ Y+ AR+GE +EL +++ I + + +E L+D + +I RV CSKGTYI
Sbjct: 126 AFSACMVDGKRAYELARKGEDVELKAKQLVIDEIELLECRLDDPEPMIRIRVVCSKGTYI 185
Query: 481 RSLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAITKN 526
R+L D G+AL S AHLT L R +G +D + + +E I +
Sbjct: 186 RALARDIGEALHSGAHLTGLIRTRVGDVRLEDCLDPEHFKEWIDRQ 231
>gi|255014842|ref|ZP_05286968.1| tRNA pseudouridine synthase B [Bacteroides sp. 2_1_7]
gi|256840988|ref|ZP_05546495.1| tRNA pseudouridine synthase B [Parabacteroides sp. D13]
gi|298375757|ref|ZP_06985713.1| tRNA pseudouridine synthase B [Bacteroides sp. 3_1_19]
gi|410102749|ref|ZP_11297674.1| tRNA pseudouridine synthase B [Parabacteroides sp. D25]
gi|256736831|gb|EEU50158.1| tRNA pseudouridine synthase B [Parabacteroides sp. D13]
gi|298266794|gb|EFI08451.1| tRNA pseudouridine synthase B [Bacteroides sp. 3_1_19]
gi|409237876|gb|EKN30671.1| tRNA pseudouridine synthase B [Parabacteroides sp. D25]
Length = 235
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 96/224 (42%), Positives = 136/224 (60%), Gaps = 8/224 (3%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR----RLVKVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G ++ NKP WTSF + K R R +KVKK VGHAGTLDP+ATG++IVC G+ATK
Sbjct: 6 GEILYFNKPLTWTSFDLVNKFRYKLSRKLKVKKIKVGHAGTLDPLATGVMIVCTGRATKR 65
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
+D +Q K Y +LGE T ++D + + P EHI E + + +F G I Q+PP
Sbjct: 66 IDEFQYQTKEYIATLKLGETTPSFDLEKEIDAVYPTEHITRELVEEVLKTFVGTIQQIPP 125
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRS 482
+FSA KV G++ Y+ AR+GE +EL + + I + ++ D + RV CSKGTYIR+
Sbjct: 126 VFSACKVEGKRAYELARKGEEVELKSKTLVIDELELLEC--DLPVIKIRVVCSKGTYIRA 183
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAITKN 526
L D GKAL S AHL L R IG+ + D +E+++ + +N
Sbjct: 184 LARDIGKALDSGAHLIGLERTRIGEVTLDMCMSPEEIDDFLEQN 227
>gi|325954125|ref|YP_004237785.1| tRNA pseudouridine synthase B [Weeksella virosa DSM 16922]
gi|323436743|gb|ADX67207.1| tRNA pseudouridine synthase B [Weeksella virosa DSM 16922]
Length = 230
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 100/212 (47%), Positives = 131/212 (61%), Gaps = 10/212 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR-------RLVKVKKVGHAGTLDPMATGLLIVCVGKATK 361
G + L++KP WTSF V K+R +L K+K VGHAGTLDP ATGLLIVC GK TK
Sbjct: 9 GQVFLIDKPLDWTSFDVVNKIRWNLRKTYQLKKIK-VGHAGTLDPKATGLLIVCCGKMTK 67
Query: 362 LVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVP 421
+D+ Q K Y+G +L T T+D +S + H+ +E I + F G+I QVP
Sbjct: 68 QIDQIQAQHKTYTGTIKLDATTPTYDLESEEDCQFSTAHLTEEKIHETTKQFIGKIDQVP 127
Query: 422 PMFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIR 481
P+ SAIK G+++Y+ AR GE+IE+ PR+I I F I R + + F V CSKGTYIR
Sbjct: 128 PLHSAIKKDGKRLYEIARAGETIEIEPRKIEILSFKITRI--ELPFVDFEVVCSKGTYIR 185
Query: 482 SLCADFGKALGSCAHLTALRRDSIGQYSADDA 513
SL DFG++L +LTAL R IG Y+ DA
Sbjct: 186 SLAFDFGRSLQVGGYLTALCRTKIGDYALKDA 217
>gi|313148107|ref|ZP_07810300.1| tRNA pseudouridine synthase B [Bacteroides fragilis 3_1_12]
gi|313136874|gb|EFR54234.1| tRNA pseudouridine synthase B [Bacteroides fragilis 3_1_12]
Length = 235
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 95/205 (46%), Positives = 127/205 (61%), Gaps = 8/205 (3%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR----RLVKVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G ++ NKP GWTSF V G R R +KVKK VGHAGTLDP+ATG++IVC GKATK
Sbjct: 8 GEVLYFNKPLGWTSFKVVGHARYHICRRIKVKKLKVGHAGTLDPLATGVMIVCTGKATKR 67
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ +Q K Y RLG T ++D + + P EHI E + + +F GEI Q+PP
Sbjct: 68 IEEFQYHTKEYVATIRLGATTPSYDLEHEIDATYPTEHITRELVEETLKTFVGEIQQIPP 127
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRS 482
FSA KV G + YD AR+G+ +EL P+ + I + ++ + + RV CSKGTYIR+
Sbjct: 128 AFSACKVDGARAYDLARKGQEVELKPKLLVIDEIELLEC--NLPEIKIRVVCSKGTYIRA 185
Query: 483 LCADFGKALGSCAHLTALRRDSIGQ 507
L D G+AL S AHLT L R +G+
Sbjct: 186 LARDIGEALQSGAHLTGLIRTRVGE 210
>gi|297530559|ref|YP_003671834.1| tRNA pseudouridine synthase B [Geobacillus sp. C56-T3]
gi|297253811|gb|ADI27257.1| tRNA pseudouridine synthase B [Geobacillus sp. C56-T3]
Length = 302
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 93/218 (42%), Positives = 135/218 (61%), Gaps = 11/218 (5%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L+NKPKG TS K+RRL+ VKK GH GTLDP +G+L +C+GKAT++ + G
Sbjct: 4 VLLLNKPKGMTSHDCVAKVRRLLGVKKAGHTGTLDPNVSGVLPICLGKATRIAEFLTGTT 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG AT+T DAD +I P + I +I S GEI Q PPM+SA+KV
Sbjct: 64 KAYEGKVTLGAATTTEDADGDIIAARPVDRPIARAEIEAVFDSLTGEIEQTPPMYSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLI-------FRVTCSKGTYIRS 482
GG+K+Y+ AR G +E RR++I++ ++ L++R+ FRVTCSKGTY+R+
Sbjct: 124 GGKKLYEYARAGIEVERPTRRVTIYELEL---LDEREQFFGETVSFRFRVTCSKGTYVRT 180
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELE 520
L G+ LG AH++ L R + G + +D F+++E
Sbjct: 181 LAVMIGERLGYPAHMSDLIRTASGPFRLEDCVTFEDVE 218
>gi|402817506|ref|ZP_10867094.1| tRNA pseudouridine synthase B [Paenibacillus alvei DSM 29]
gi|402505028|gb|EJW15555.1| tRNA pseudouridine synthase B [Paenibacillus alvei DSM 29]
Length = 306
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 91/221 (41%), Positives = 133/221 (60%), Gaps = 10/221 (4%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
V KP+ WTS V K+RRL++ K++GH GTLDP G+L +C+GKAT++V+ Q M K Y
Sbjct: 10 VWKPEDWTSHDVVAKVRRLIREKRIGHTGTLDPKVVGVLPLCIGKATRIVEYLQEMPKQY 69
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEK 433
V R G +T T D V++R H+ E IR+A SF G+I Q+PPM+SA+KV G++
Sbjct: 70 EAVLRFGLSTDTEDLSGEVLERSDASHLTAEMIREAVHSFIGDIEQIPPMYSAVKVDGKR 129
Query: 434 MYDKARRGESIELSPRRISIFQFDIERSLEDRQ------NLIFRVTCSKGTYIRSLCADF 487
+YD AR G+++E R+++I + D L D Q + F V CSKGTYIR+LC D
Sbjct: 130 LYDLAREGKTVERKARQVTIHKID----LLDMQLGAAEPEIRFLVECSKGTYIRTLCVDI 185
Query: 488 GKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAITKNYF 528
G+ LG + + L R + F+++E+A+ F
Sbjct: 186 GRKLGVPSTMAKLTRTVSAGFVPSQCVTFEQIEQAVADGTF 226
>gi|386714379|ref|YP_006180702.1| tRNA pseudouridine 55 synthase [Halobacillus halophilus DSM 2266]
gi|384073935|emb|CCG45428.1| tRNA pseudouridine 55 synthase [Halobacillus halophilus DSM 2266]
Length = 298
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 93/216 (43%), Positives = 137/216 (63%), Gaps = 5/216 (2%)
Query: 316 KPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSG 375
KPKG+TS K R ++K KK+GH GTLDP G+L +CVGKATK+V IK Y
Sbjct: 9 KPKGFTSHDCVSKARGMLKTKKIGHTGTLDPEVEGVLPLCVGKATKIVPFLTDTIKVYEA 68
Query: 376 VFRLGEATSTWDADSPVIQREPWE-HIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEKM 434
R+G +T+T DA+ +I+R+P + E I++ SF+G+I QVPPM+SA+KV G+K+
Sbjct: 69 SVRMGYSTATEDAEGEIIERKPVSPSLSLEKIKEELPSFQGDIIQVPPMYSAVKVNGKKL 128
Query: 435 YDKARRGESIELSPRRISIFQFDI-ERSL---EDRQNLIFRVTCSKGTYIRSLCADFGKA 490
Y+ AR G +E R++ I Q D+ R L E+ + RV CSKGTYIR+LCAD G+A
Sbjct: 129 YEYAREGIEVERPKRQVRIEQIDVTSRDLVFEEETASFSIRVVCSKGTYIRTLCADLGRA 188
Query: 491 LGSCAHLTALRRDSIGQYSADDAWEFKELEEAITKN 526
LG +H+++L R S + + F+E++ + ++
Sbjct: 189 LGYPSHMSSLVRTKTADISEQECYRFEEIQRKVDEH 224
>gi|226313016|ref|YP_002772910.1| tRNA pseudouridine synthase B [Brevibacillus brevis NBRC 100599]
gi|226095964|dbj|BAH44406.1| tRNA pseudouridine synthase B [Brevibacillus brevis NBRC 100599]
Length = 308
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 93/215 (43%), Positives = 137/215 (63%), Gaps = 4/215 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++++KP G TS ++RRL KKVGH GTLDP TG+L +CVG AT+LV+ Q +
Sbjct: 7 VLVIDKPAGMTSHDCVARIRRLYGTKKVGHTGTLDPDVTGVLPICVGHATRLVEYLQELP 66
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH--IKDEDIRKAAASFRGEIWQVPPMFSAIK 428
K Y V RLG T+T DA V+++ + I E I+ SF GE+ QVPPMFSA+K
Sbjct: 67 KRYDVVMRLGSTTTTEDASGEVVEQAGVDAAWITTERIQALFESFLGEMEQVPPMFSAVK 126
Query: 429 VGGEKMYDKARRGESIELSPRRISIFQFDIER-SLE-DRQNLIFRVTCSKGTYIRSLCAD 486
V G+++YD AR G IE R++++++ + + S++ D ++ F TCSKGTY+R+LC D
Sbjct: 127 VNGKRLYDLAREGTVIERQARKVTLYELTLHKISVDGDTVDVAFTCTCSKGTYMRTLCVD 186
Query: 487 FGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
G+ALG AH+ LRR G + +A +++EE
Sbjct: 187 LGRALGYPAHMKLLRRIKSGPFQEQEAIPLQQIEE 221
>gi|313207475|ref|YP_004046652.1| tRNA pseudouridine synthase b [Riemerella anatipestifer ATCC 11845
= DSM 15868]
gi|416110452|ref|ZP_11592067.1| tRNA pseudouridine synthase B [Riemerella anatipestifer RA-YM]
gi|442315332|ref|YP_007356635.1| Pseudouridine synthase [Riemerella anatipestifer RA-CH-2]
gi|312446791|gb|ADQ83146.1| tRNA pseudouridine synthase B [Riemerella anatipestifer ATCC 11845
= DSM 15868]
gi|315023375|gb|EFT36385.1| tRNA pseudouridine synthase B [Riemerella anatipestifer RA-YM]
gi|441484255|gb|AGC40941.1| Pseudouridine synthase [Riemerella anatipestifer RA-CH-2]
Length = 239
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 103/214 (48%), Positives = 130/214 (60%), Gaps = 10/214 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGK----LRRLVKVKKV--GHAGTLDPMATGLLIVCVGKATKL 362
G + LV+KP WTSF K L+R K+KK+ GHAGTLDP ATGLL+VC GKATK
Sbjct: 16 GQVFLVDKPLDWTSFQAVNKMKFKLKREFKLKKIKIGHAGTLDPRATGLLVVCTGKATKT 75
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
+ Q K Y ++G T+++D + P I + I E I + SF GEI Q PP
Sbjct: 76 IPEIQNAPKEYHAEIKIGVQTASYDTEEPEILPQDISTITKEQILETLDSFVGEIDQTPP 135
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFD-IERSLEDRQNLIFRVTCSKGTYIR 481
+FSAIKV GE+ Y+ AR GE +EL R+ +I+ D IE L + F V CSKGTYIR
Sbjct: 136 IFSAIKVDGERAYNLARAGEEVELKKRKTTIYFIDNIEVDLPFVR---FSVGCSKGTYIR 192
Query: 482 SLCADFGKALGSCAHLTALRRDSIGQYSADDAWE 515
SL D G+ALG A+LT LRR IG +S + A E
Sbjct: 193 SLAHDIGQALGVGAYLTQLRRTKIGDFSVEQASE 226
>gi|148273328|ref|YP_001222889.1| tRNA pseudouridine synthase B [Clavibacter michiganensis subsp.
michiganensis NCPPB 382]
gi|147831258|emb|CAN02214.1| tRNA pseudouridine synthase B [Clavibacter michiganensis subsp.
michiganensis NCPPB 382]
Length = 319
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 97/232 (41%), Positives = 136/232 (58%), Gaps = 17/232 (7%)
Query: 301 PPTWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKAT 360
P T G ++L++K WTS + + RRL +KVGHAGTLDPMATGL+I+ V +T
Sbjct: 10 PSTASG----LLLIDKRGEWTSHDLVARTRRLAGTRKVGHAGTLDPMATGLMILGVNSST 65
Query: 361 KLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKD---EDIRKAAASFRGEI 417
+L+ G+ K Y RLG AT+T D + V+ R I+D D+ +A A+ RG I
Sbjct: 66 RLLTYLVGLDKEYLATIRLGRATTTDDREGEVVSRAEPGRIRDLAVADVERAVAALRGTI 125
Query: 418 WQVPPMFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDI--------ERSLED--RQN 467
QVP SAIKV G++ Y + R GE +EL+ R +++ FD+ E ED + +
Sbjct: 126 SQVPSAVSAIKVDGKRAYARVRAGEDVELAAREVTVSAFDVLRFDAVEPEEGEEDGAQLD 185
Query: 468 LIFRVTCSKGTYIRSLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKEL 519
L R+TCS GTY+R+L D G+ALG HLTALRR +G + DDA ++
Sbjct: 186 LDVRITCSSGTYVRALARDLGRALGVGGHLTALRRTRVGPFRVDDAVSIDDM 237
>gi|418421222|ref|ZP_12994398.1| tRNA pseudouridine synthase B [Mycobacterium abscessus subsp.
bolletii BD]
gi|363997689|gb|EHM18900.1| tRNA pseudouridine synthase B [Mycobacterium abscessus subsp.
bolletii BD]
Length = 298
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 95/217 (43%), Positives = 131/217 (60%), Gaps = 3/217 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G TS V + RR+ +KVGHAGTLDPMATG+L++ + +ATK++
Sbjct: 10 LVIVDKPAGMTSHDVVSRCRRIFSTRKVGHAGTLDPMATGVLVIGIERATKIMGLLTLTT 69
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y+ R G++TST DA+ V+Q H+ D DI A A RG+I QVP SAIKV
Sbjct: 70 KSYAATIRFGQSTSTDDAEGEVLQAVSASHLTDADIEAAVAGLRGDIAQVPSSVSAIKVD 129
Query: 431 GEKMYDKARRGESIELSPRRISIFQFD---IERSLEDRQNLIFRVTCSKGTYIRSLCADF 487
G++ Y AR G+S+EL+ R + + +FD + S D ++ V CS GTYIR+L D
Sbjct: 130 GQRAYKLAREGQSVELAARPVRVSRFDVLAVRGSGGDLVDVDVEVDCSSGTYIRALARDA 189
Query: 488 GKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAIT 524
G ALG HLTALRR +G + D A + L + T
Sbjct: 190 GAALGVGGHLTALRRIRVGDFGLDRARTLEALADEAT 226
>gi|383484838|ref|YP_005393750.1| tRNA pseudouridine synthase b [Riemerella anatipestifer ATCC 11845
= DSM 15868]
gi|386320522|ref|YP_006016684.1| Pseudouridine synthase [Riemerella anatipestifer RA-GD]
gi|325335065|gb|ADZ11339.1| Pseudouridine synthase [Riemerella anatipestifer RA-GD]
gi|380459523|gb|AFD55207.1| tRNA pseudouridine synthase b [Riemerella anatipestifer ATCC 11845
= DSM 15868]
Length = 232
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 103/214 (48%), Positives = 130/214 (60%), Gaps = 10/214 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGK----LRRLVKVKKV--GHAGTLDPMATGLLIVCVGKATKL 362
G + LV+KP WTSF K L+R K+KK+ GHAGTLDP ATGLL+VC GKATK
Sbjct: 9 GQVFLVDKPLDWTSFQAVNKMKFKLKREFKLKKIKIGHAGTLDPRATGLLVVCTGKATKT 68
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
+ Q K Y ++G T+++D + P I + I E I + SF GEI Q PP
Sbjct: 69 IPEIQNAPKEYHAEIKIGVQTASYDTEEPEILPQDISTITKEQILETLDSFVGEIDQTPP 128
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFD-IERSLEDRQNLIFRVTCSKGTYIR 481
+FSAIKV GE+ Y+ AR GE +EL R+ +I+ D IE L + F V CSKGTYIR
Sbjct: 129 IFSAIKVDGERAYNLARAGEEVELKKRKTTIYFIDNIEVDLPFVR---FSVGCSKGTYIR 185
Query: 482 SLCADFGKALGSCAHLTALRRDSIGQYSADDAWE 515
SL D G+ALG A+LT LRR IG +S + A E
Sbjct: 186 SLAHDIGQALGVGAYLTQLRRTKIGDFSVEQASE 219
>gi|302865977|ref|YP_003834614.1| tRNA pseudouridine synthase B [Micromonospora aurantiaca ATCC
27029]
gi|315502537|ref|YP_004081424.1| tRNA pseudouridine synthase b [Micromonospora sp. L5]
gi|302568836|gb|ADL45038.1| tRNA pseudouridine synthase B [Micromonospora aurantiaca ATCC
27029]
gi|315409156|gb|ADU07273.1| tRNA pseudouridine synthase B [Micromonospora sp. L5]
Length = 294
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 95/214 (44%), Positives = 138/214 (64%), Gaps = 3/214 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++V+KP G TS V ++RRL + ++VGH GTLDPMATG+L++ VG+AT+L+ G
Sbjct: 6 LIVVDKPGGMTSHDVVARIRRLARTRRVGHGGTLDPMATGVLVIGVGRATRLLTYVIGAG 65
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y+ RLG+AT T DA+ V+ P + D+ +R A A+ GEI QVP SAIK+
Sbjct: 66 KSYAATIRLGQATVTDDAEGEVVATTPAGAVTDDGVRAALAALTGEIDQVPSAVSAIKID 125
Query: 431 GEKMYDKARRGESIELSPRRISIFQFD---IERSLEDRQNLIFRVTCSKGTYIRSLCADF 487
G++ Y + R GE++EL RR+++ + D I R + D ++ VTCS GTYIR+L D
Sbjct: 126 GQRAYKRVRDGEAVELPARRVTVSRLDVLAIRRDVPDVVDVDVDVTCSSGTYIRALARDA 185
Query: 488 GKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
G ALG HLTALRR ++G ++ +A +LEE
Sbjct: 186 GAALGVGGHLTALRRTAVGGFTLAEAATLDQLEE 219
>gi|409195823|ref|ZP_11224486.1| tRNA pseudouridine synthase B [Marinilabilia salmonicolor JCM
21150]
Length = 261
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 99/223 (44%), Positives = 130/223 (58%), Gaps = 8/223 (3%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR-RL-----VKVKKVGHAGTLDPMATGLLIVCVGKATKL 362
G ++LV+KP WTSF V K+R RL +K KVGHAGTLDP+A+GL+IVC GKATK
Sbjct: 22 GLILLVDKPLEWTSFDVVKKIRSRLQHGLKLKKLKVGHAGTLDPLASGLVIVCTGKATKQ 81
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
+DR G K Y + G T ++D ++PV Q P HI + + A F GE QVPP
Sbjct: 82 IDRLMGHDKTYVAGIKFGATTPSFDLETPVDQEFPAGHITSDSVAAALLHFLGEQDQVPP 141
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRS 482
FSA+KV G++ Y AR+GE E+ R++ + + D I + CSKGTYIRS
Sbjct: 142 QFSAVKVDGKRAYHMARKGEEFEIKSRKVVFHELKLVGF--DNDEAIVHIRCSKGTYIRS 199
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAITK 525
D G AL S AHL+ LRR IG+ ++A +EA K
Sbjct: 200 FARDLGLALKSGAHLSGLRRTVIGEAQVENALTIGSFDEAFDK 242
>gi|288799661|ref|ZP_06405120.1| tRNA pseudouridine synthase B [Prevotella sp. oral taxon 299 str.
F0039]
gi|288332909|gb|EFC71388.1| tRNA pseudouridine synthase B [Prevotella sp. oral taxon 299 str.
F0039]
Length = 235
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 95/219 (43%), Positives = 128/219 (58%), Gaps = 6/219 (2%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRL------VKVKKVGHAGTLDPMATGLLIVCVGKATKL 362
G ++ ++KP G TSF +R L VK KVGHAGTLDP+ATG+L +C GKATKL
Sbjct: 6 GEIIHIDKPYGITSFGALAHIRYLLSRKLGVKRLKVGHAGTLDPLATGVLTLCTGKATKL 65
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
+++ QG K Y +LG T ++D + PV + EHI E I F G+I QVPP
Sbjct: 66 IEQLQGHTKEYVATMQLGATTPSYDMEHPVNETFETEHIHRESIDAVLPLFIGDIQQVPP 125
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRS 482
+SA KV G + YD R GE +ELS ++I I + ++ E+ + L RV C KGTYIRS
Sbjct: 126 SYSACKVNGARAYDLKRAGEHVELSAKQIRIDEIEVLHFDEETKLLTIRVVCGKGTYIRS 185
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
L D G+AL S A+LT LRR +G ++ + E
Sbjct: 186 LARDLGRALNSGAYLTELRRTKVGDVFVENCINYDSFGE 224
>gi|375008238|ref|YP_004981871.1| tRNA pseudouridine synthase B [Geobacillus thermoleovorans
CCB_US3_UF5]
gi|359287087|gb|AEV18771.1| tRNA pseudouridine synthase B [Geobacillus thermoleovorans
CCB_US3_UF5]
Length = 302
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 93/218 (42%), Positives = 135/218 (61%), Gaps = 11/218 (5%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L+NKPKG TS K+RRL+ VKK GH GTLDP +G+L +C+GKAT++ + G
Sbjct: 4 VLLLNKPKGMTSHDCVAKVRRLLGVKKAGHTGTLDPNVSGVLPICLGKATRIAEFLTGTT 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG AT+T DAD +I P + I +I S GEI Q PPM+SA+KV
Sbjct: 64 KTYEGKVTLGAATTTEDADGDIIAARPVDRPIARAEIEAVFDSLTGEIEQTPPMYSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLI-------FRVTCSKGTYIRS 482
GG+K+Y+ AR G +E RR++I++ ++ L++R+ FRVTCSKGTY+R+
Sbjct: 124 GGKKLYEYARAGIEVERPTRRVTIYELEL---LDEREQFFGETVSFRFRVTCSKGTYVRT 180
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELE 520
L G+ LG AH++ L R + G + +D F+++E
Sbjct: 181 LAVMIGERLGYPAHMSDLIRTASGPFRLEDCVTFEDVE 218
>gi|261419466|ref|YP_003253148.1| tRNA pseudouridine synthase B [Geobacillus sp. Y412MC61]
gi|319766281|ref|YP_004131782.1| tRNA pseudouridine synthase B [Geobacillus sp. Y412MC52]
gi|448237422|ref|YP_007401480.1| tRNA pseudouridine synthase B [Geobacillus sp. GHH01]
gi|261375923|gb|ACX78666.1| tRNA pseudouridine synthase B [Geobacillus sp. Y412MC61]
gi|317111147|gb|ADU93639.1| tRNA pseudouridine synthase B [Geobacillus sp. Y412MC52]
gi|445206264|gb|AGE21729.1| tRNA pseudouridine synthase B [Geobacillus sp. GHH01]
Length = 302
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 93/218 (42%), Positives = 135/218 (61%), Gaps = 11/218 (5%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L+NKPKG TS K+RRL+ VKK GH GTLDP +G+L +C+GKAT++ + G
Sbjct: 4 VLLLNKPKGMTSHDCVAKVRRLLGVKKAGHTGTLDPNVSGVLPICLGKATRIAEFLTGTT 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG AT+T DAD +I P + I +I S GEI Q PPM+SA+KV
Sbjct: 64 KTYEGKVTLGAATTTEDADGDIIAARPVDRPIARAEIEAVFDSLTGEIEQTPPMYSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLI-------FRVTCSKGTYIRS 482
GG+K+Y+ AR G +E RR++I++ ++ L++R+ FRVTCSKGTY+R+
Sbjct: 124 GGKKLYEYARAGIEVERPTRRVTIYELEL---LDEREQFFGETVSFRFRVTCSKGTYVRT 180
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELE 520
L G+ LG AH++ L R + G + +D F+++E
Sbjct: 181 LAVMIGERLGYPAHMSDLIRTASGPFRLEDCVTFEDVE 218
>gi|339443398|ref|YP_004709403.1| pseudouridine synthase [Clostridium sp. SY8519]
gi|338902799|dbj|BAK48301.1| pseudouridine synthase [Clostridium sp. SY8519]
Length = 312
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 92/211 (43%), Positives = 129/211 (61%), Gaps = 2/211 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++V K KG+TSF V K+R + KK+GH GTLDP ATG+L VC+GKATK+ + G
Sbjct: 5 IIIVKKEKGFTSFDVVAKMRGICGQKKIGHTGTLDPDATGVLPVCLGKATKICELLAGTD 64
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y RLG T T D+ V R P EHI E++R+AA F G Q+PPM+SA+KV
Sbjct: 65 KEYEASLRLGITTDTQDSSGTVTGRFPTEHITPEEVREAAEQFHGFTEQIPPMYSALKVR 124
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKA 490
G+K+Y+ AR+G IE PRRI + + + R L R+ CSKGTYIR++C D G+
Sbjct: 125 GKKLYELARQGIEIERKPRRIHVSEIAVTRMC--LPELSLRIVCSKGTYIRTICHDLGQK 182
Query: 491 LGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
L A +T L+R + + + A E+++
Sbjct: 183 LSCGAVMTELQRTRVAGFRLEQAHTLGEIQD 213
>gi|407452880|ref|YP_006724605.1| pseudouridine synthase [Riemerella anatipestifer RA-CH-1]
gi|403313864|gb|AFR36705.1| Pseudouridine synthase [Riemerella anatipestifer RA-CH-1]
Length = 232
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 102/214 (47%), Positives = 131/214 (61%), Gaps = 10/214 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGK----LRRLVKVKKV--GHAGTLDPMATGLLIVCVGKATKL 362
G + LV+KP WTSF K L+R K+KK+ GHAGTLDP ATGLL+VC GKATK
Sbjct: 9 GQVFLVDKPLDWTSFQAVNKMKFKLKREFKLKKIKIGHAGTLDPRATGLLVVCTGKATKT 68
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
+ Q K Y ++G T+++D + P I + I E I + SF GEI Q PP
Sbjct: 69 IPEIQNAPKEYHAEIKIGVQTASYDTEEPEILPQDISTITKEQILETLDSFVGEIDQTPP 128
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLE-DRQNLIFRVTCSKGTYIR 481
+FSAIKV GE+ Y+ AR GE +EL R+ +I+ D ++E D + F V CSKGTYIR
Sbjct: 129 IFSAIKVDGERAYNLARAGEEVELKKRKTTIYFID---NIEIDLPFVRFSVGCSKGTYIR 185
Query: 482 SLCADFGKALGSCAHLTALRRDSIGQYSADDAWE 515
SL D G+ALG A+LT LRR IG +S + A E
Sbjct: 186 SLAHDIGQALGVGAYLTQLRRTKIGDFSVEQASE 219
>gi|41408996|ref|NP_961832.1| tRNA pseudouridine synthase B [Mycobacterium avium subsp.
paratuberculosis K-10]
gi|54036503|sp|Q73VW3.1|TRUB_MYCPA RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|41397355|gb|AAS05215.1| TruB [Mycobacterium avium subsp. paratuberculosis K-10]
Length = 293
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 92/219 (42%), Positives = 131/219 (59%), Gaps = 2/219 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G TS V G+ RR+ ++VGHAGTLDPMATG+L++ V +ATK++
Sbjct: 6 LVVVDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVLGVERATKILGLLTAAA 65
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K YS RLG+ATST DA+ V + H+ + I A RG+I QVP SAIKV
Sbjct: 66 KSYSATIRLGQATSTDDAEGDVARSVDARHLTSQAIEAAVGGLRGDIHQVPSTVSAIKVA 125
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIE--RSLEDRQNLIFRVTCSKGTYIRSLCADFG 488
G++ Y R G+++EL R + I +F++ R+ ++ V CS GTY+R+L D G
Sbjct: 126 GKRAYKLVREGQAVELPARPVRIDRFEVRGLRAAGACVDVDVEVDCSSGTYVRALARDLG 185
Query: 489 KALGSCAHLTALRRDSIGQYSADDAWEFKELEEAITKNY 527
ALG HLTALRR +G++ + A+ EL E +Y
Sbjct: 186 AALGVGGHLTALRRTRVGRFGLEQAYGLDELAECPRLSY 224
>gi|315444939|ref|YP_004077818.1| tRNA pseudouridine synthase B [Mycobacterium gilvum Spyr1]
gi|315263242|gb|ADT99983.1| tRNA pseudouridine synthase B [Mycobacterium gilvum Spyr1]
Length = 294
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 95/222 (42%), Positives = 132/222 (59%), Gaps = 8/222 (3%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G TS V G+ RRL +KVGHAGTLDPMATG+L+V + +ATK++
Sbjct: 7 LVVVDKPGGMTSHDVVGRCRRLFGTRKVGHAGTLDPMATGVLVVGIERATKILGLLTATD 66
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y+ RLG+ TST DA+ ++ + + DE I +A A RG I QVP SAIK+
Sbjct: 67 KSYTATLRLGQTTSTEDAEGELLHQVSAAQVTDEQIERAIAPLRGAIEQVPSAVSAIKIA 126
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQN-----LIFRVTCSKGTYIRSLCA 485
G++ Y R GE +E+ R + I +F++ L R+N + V CS GTYIR+L
Sbjct: 127 GKRAYQMVRDGEQVEIPARPVRIDRFEV---LAVRRNGDVVDVDVVVDCSSGTYIRALAR 183
Query: 486 DFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAITKNY 527
D G ALG HLTALRR +G + D A ++L +A +Y
Sbjct: 184 DVGAALGVGGHLTALRRTRVGGFGLDQARTLEQLADAAELSY 225
>gi|169350218|ref|ZP_02867156.1| hypothetical protein CLOSPI_00962 [Clostridium spiroforme DSM 1552]
gi|169293001|gb|EDS75134.1| tRNA pseudouridine synthase B [Clostridium spiroforme DSM 1552]
Length = 286
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 91/213 (42%), Positives = 132/213 (61%), Gaps = 4/213 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L+NKP G TS V KLR+++K KKVGH GTLDP ATG+L+VCV KATK++
Sbjct: 10 IILINKPSGMTSHDVVNKLRKILKTKKVGHCGTLDPDATGVLVVCVNKATKVLQFLTSDS 69
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y LG +T T+DA V++++ + + + I +F G+ Q PP++SAIKV
Sbjct: 70 KEYIATLSLGTSTDTYDASGKVLEKKEYSGLDKQVIIDCFNNFVGKQIQKPPIYSAIKVN 129
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLI-FRVTCSKGTYIRSLCADFGK 489
G+K+Y+ AR GE +E+ R + I +I ++ + NLI F+V CSKGTYIRSLC D K
Sbjct: 130 GKKLYEYARNGEEVEIPTREVEINYLEI---MDIKDNLIKFKVGCSKGTYIRSLCFDLAK 186
Query: 490 ALGSCAHLTALRRDSIGQYSADDAWEFKELEEA 522
ALG H+ L R G +S + + +++E
Sbjct: 187 ALGYPGHMQDLIRTKSGNFSIEKCYTLEQIENG 219
>gi|391231119|ref|ZP_10267325.1| tRNA pseudouridine 55 synthase [Opitutaceae bacterium TAV1]
gi|391220780|gb|EIP99200.1| tRNA pseudouridine 55 synthase [Opitutaceae bacterium TAV1]
Length = 242
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 92/211 (43%), Positives = 130/211 (61%), Gaps = 2/211 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L++KP TS V +LR ++ +K+VGHAGTLDPMATGLL+V VGKAT L
Sbjct: 11 VLLIDKPTDHTSHDVIARLRGILHMKRVGHAGTLDPMATGLLVVLVGKATSLSQYLMSAD 70
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
KGY+G LG+ T+T DA+ +++ P + + + A S G+ +Q+PPMFSAIK+
Sbjct: 71 KGYTGTVTLGKTTNTQDAEGEMLETRPVPPLTEAQVAAALRSMLGDQYQMPPMFSAIKID 130
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKA 490
G +Y AR+GE IE PR I + QFD+ R + FRV SKGTY+R+L D G
Sbjct: 131 GVPLYKSARKGEDIEREPRFIRVSQFDLTR--WQSPEIDFRVKVSKGTYVRTLAHDLGDK 188
Query: 491 LGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
LG HL+ALRR + G + + A + L++
Sbjct: 189 LGCGGHLSALRRTACGPLTIERAVTLEALQK 219
>gi|423343058|ref|ZP_17320772.1| tRNA pseudouridine synthase B [Parabacteroides johnsonii
CL02T12C29]
gi|409216734|gb|EKN09717.1| tRNA pseudouridine synthase B [Parabacteroides johnsonii
CL02T12C29]
Length = 236
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 97/209 (46%), Positives = 128/209 (61%), Gaps = 8/209 (3%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR----RLVKVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G +V NKP WTSF + K R R +KVKK VGHAGTLDP+ATG++IVC GKATK
Sbjct: 6 GEVVYFNKPLKWTSFDLVNKFRYKLSRKLKVKKIKVGHAGTLDPLATGVMIVCTGKATKR 65
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
+D +Q K Y +LGE T ++D + + P EHI +++ K SF G I Q+PP
Sbjct: 66 IDEFQYQTKEYVATLKLGETTPSFDLEKEIDGVYPTEHITRKEVEKVLQSFVGTIQQIPP 125
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRS 482
+FSA KV G++ Y+ AR+GE +EL + + I + ++ D + RV CSKGTYIR+
Sbjct: 126 VFSACKVDGKRAYELARKGEEVELKSKTLVIDEMELLEC--DLPVVKIRVVCSKGTYIRA 183
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSAD 511
L D G AL S AHL AL R IG + D
Sbjct: 184 LARDIGVALQSGAHLIALERTRIGDITLD 212
>gi|218262343|ref|ZP_03476848.1| hypothetical protein PRABACTJOHN_02522 [Parabacteroides johnsonii
DSM 18315]
gi|218223438|gb|EEC96088.1| hypothetical protein PRABACTJOHN_02522 [Parabacteroides johnsonii
DSM 18315]
Length = 237
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 97/209 (46%), Positives = 128/209 (61%), Gaps = 8/209 (3%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR----RLVKVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G +V NKP WTSF + K R R +KVKK VGHAGTLDP+ATG++IVC GKATK
Sbjct: 6 GEVVYFNKPLKWTSFDLVNKFRYKLSRKLKVKKIKVGHAGTLDPLATGVMIVCTGKATKR 65
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
+D +Q K Y +LGE T ++D + + P EHI +++ K SF G I Q+PP
Sbjct: 66 IDEFQYQTKEYVATLKLGETTPSFDLEKEIDGVYPTEHITRKEVEKVLQSFVGTIQQIPP 125
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRS 482
+FSA KV G++ Y+ AR+GE +EL + + I + ++ D + RV CSKGTYIR+
Sbjct: 126 VFSACKVDGKRAYELARKGEEVELKSKTLVIDEMELLEC--DLPVVKIRVVCSKGTYIRA 183
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSAD 511
L D G AL S AHL AL R IG + D
Sbjct: 184 LARDIGVALQSGAHLIALERTRIGDITLD 212
>gi|381396980|ref|ZP_09922394.1| tRNA pseudouridine synthase B [Microbacterium laevaniformans OR221]
gi|380775939|gb|EIC09229.1| tRNA pseudouridine synthase B [Microbacterium laevaniformans OR221]
Length = 304
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 101/220 (45%), Positives = 129/220 (58%), Gaps = 7/220 (3%)
Query: 300 LPPTWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKA 359
+P + P G + LV+KP+ TS V + RR + +K+GHAGTLDPMATGLLI+ VG A
Sbjct: 1 MPASLLAPNGVL-LVDKPQAITSHDVVARARRALNTRKIGHAGTLDPMATGLLILGVGPA 59
Query: 360 TKLVDRYQGMIKGYSGVFRLGEATSTWDAD---SPVIQREPWEHIKDEDIRKAAASFRGE 416
T+L+ G+ K Y LG AT + DAD + E + DE I A+ GE
Sbjct: 60 TRLLTFIVGLGKTYEATVLLGVATDSDDADGIETAWADAEALAAVTDERIAAGIAALTGE 119
Query: 417 IWQVPPMFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIER---SLEDRQNLIFRVT 473
I QVP SAIKV G + YD AR GES+EL+ RR+++ +FD+ R + E R L V
Sbjct: 120 IDQVPSTVSAIKVAGRRAYDLARAGESVELAARRVTVDRFDVVRRRDTAEGRIELDVVVD 179
Query: 474 CSKGTYIRSLCADFGKALGSCAHLTALRRDSIGQYSADDA 513
CS GTYIR+L D G ALG HL ALRR IG + DA
Sbjct: 180 CSSGTYIRALARDLGAALGVGGHLRALRRTRIGAFEVSDA 219
>gi|294500894|ref|YP_003564594.1| tRNA pseudouridine synthase B [Bacillus megaterium QM B1551]
gi|294350831|gb|ADE71160.1| tRNA pseudouridine synthase B [Bacillus megaterium QM B1551]
Length = 305
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 94/223 (42%), Positives = 140/223 (62%), Gaps = 12/223 (5%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQG 368
G +VL +KP G TS K+R+L++ KKVGH GTLDP TG+L +C+G+ATK+V+ G
Sbjct: 3 GVLVL-HKPAGLTSHDCVFKVRKLLRTKKVGHTGTLDPDVTGVLPICIGRATKIVEYLTG 61
Query: 369 MIKGYSGVFRLGEATSTWDADSPVIQREPWE-HIKDEDIRKAAASFRGEIWQVPPMFSAI 427
K Y G LG +T+T D+ V++ + E I + +S GE+ QVPPM+SA+
Sbjct: 62 ATKTYEGEVTLGFSTTTEDSSGEVVEEKKVEDSFSRAQIEEVLSSMTGELQQVPPMYSAV 121
Query: 428 KVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQ-------NLIFRVTCSKGTYI 480
KV G+K+Y+ AR+G +E R I I+ F++ L+DR + FRVTCSKGTY+
Sbjct: 122 KVKGKKLYEYARQGIEVERPVRTIHIYSFEL---LDDRSTFEGEQISFKFRVTCSKGTYV 178
Query: 481 RSLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
R+L G+ALG +H++ L+R GQ+S +D F+++E A+
Sbjct: 179 RTLAVMIGEALGYPSHMSYLQRTGSGQFSLEDCVTFEDIERAV 221
>gi|253580817|ref|ZP_04858080.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251847887|gb|EES75854.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 295
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 92/214 (42%), Positives = 136/214 (63%), Gaps = 4/214 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++++ K KG+TS V KLR ++ +KK+GH GTLDP A G+L V +GKAT+LVD
Sbjct: 5 VIVIRKEKGFTSHDVVAKLRGILHMKKIGHTGTLDPDAEGVLPVALGKATRLVDMITDKE 64
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y V RLG T T D V+ + + +E++ +SF G+ QVPPM+SA+KV
Sbjct: 65 KTYEAVMRLGVVTDTQDMSGTVLSQTTELSVTEEELCTVVSSFVGDYMQVPPMYSALKVN 124
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLI-FRVTCSKGTYIRSLCADFGK 489
G+K+Y+ AR G+++E PR + ++ +I L+ L+ FRVTCSKGTYIR+LC D G+
Sbjct: 125 GKKLYELAREGKTVERKPRPVHFYEIEI---LDISFPLVRFRVTCSKGTYIRTLCHDIGE 181
Query: 490 ALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
LG A + +L R +G+++ DDA + EEA+
Sbjct: 182 KLGCGAAMESLLRTKVGRFTLDDAITLAQTEEAV 215
>gi|170760470|ref|YP_001787726.1| tRNA pseudouridine synthase B [Clostridium botulinum A3 str. Loch
Maree]
gi|169407459|gb|ACA55870.1| tRNA pseudouridine synthase B [Clostridium botulinum A3 str. Loch
Maree]
Length = 289
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 96/218 (44%), Positives = 135/218 (61%), Gaps = 3/218 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ V KPKG TSF V +R++ K+KKVGH GTLDP+ATG+L VC+GKATK+VD
Sbjct: 4 VINVLKPKGITSFDVVRDIRKIAKIKKVGHTGTLDPLATGVLPVCIGKATKIVDYIIEGT 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y +LG T T+D + V++ E + ++ KA ++G+I QVPPM+SA+K+
Sbjct: 64 KTYRVEMKLGTTTDTYDREGTVLE-EKEVSVSSTEVEKAIEKYKGDIEQVPPMYSALKIN 122
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKA 490
G+K+YD AR+G +E R+I I+ I D +IF V CSKGTYIRSLC D GK
Sbjct: 123 GQKLYDLARKGIEVEREARKIHIYDICILSI--DLPYIIFDVKCSKGTYIRSLCFDIGKD 180
Query: 491 LGSCAHLTALRRDSIGQYSADDAWEFKELEEAITKNYF 528
LGS A + L+R ++ +A + ++L E K Y
Sbjct: 181 LGSGAVMWNLQRLEASPFNIKEAIKLEDLNEKNIKQYI 218
>gi|15827813|ref|NP_302076.1| tRNA pseudouridine synthase B [Mycobacterium leprae TN]
gi|221230290|ref|YP_002503706.1| tRNA pseudouridine synthase B [Mycobacterium leprae Br4923]
gi|13959607|sp|Q9Z5I4.1|TRUB_MYCLE RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|4455683|emb|CAB36580.1| possible tRNA pseudouridine synthase B [Mycobacterium leprae]
gi|13093365|emb|CAC30497.1| tRNA pseudouridine 55 synthase [Mycobacterium leprae]
gi|219933397|emb|CAR71641.1| tRNA pseudouridine 55 synthase [Mycobacterium leprae Br4923]
Length = 320
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 93/218 (42%), Positives = 127/218 (58%), Gaps = 7/218 (3%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+++KP G TS V + RR+ ++VGHAGTLDPMATG+L++ V +ATK++ G
Sbjct: 14 IVVIDKPSGMTSHDVVARCRRIFCTRRVGHAGTLDPMATGVLVLGVDRATKILGLLAGAS 73
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y RLG+ TST DA+ ++Q H+ DE I A RG+I QVP SAIKV
Sbjct: 74 KEYVATIRLGQTTSTEDAEGELLQCVSARHVTDEAIATAIGRLRGDIKQVPSAVSAIKVD 133
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDI-------ERSLEDRQNLIFRVTCSKGTYIRSL 483
G + Y R G +EL R + I +F++ E L D +L V CS GTYIR+L
Sbjct: 134 GRRAYRLVREGHVVELQARPVRIDRFEVLAVRPGPEVGLADVIDLDVEVECSSGTYIRAL 193
Query: 484 CADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
D G A G HLT+LRR +G++ D AW ++L E
Sbjct: 194 ARDLGDAFGVGGHLTSLRRTRVGRFELDQAWSLEDLAE 231
>gi|269127533|ref|YP_003300903.1| tRNA pseudouridine synthase B [Thermomonospora curvata DSM 43183]
gi|268312491|gb|ACY98865.1| tRNA pseudouridine synthase B [Thermomonospora curvata DSM 43183]
Length = 289
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 95/213 (44%), Positives = 132/213 (61%), Gaps = 2/213 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP GWTS V +LRRL ++VGHAGTLDPMATG+L+V VGKAT+L+
Sbjct: 5 LVIVDKPAGWTSHDVVARLRRLTGTRRVGHAGTLDPMATGVLVVGVGKATRLLGHLALTD 64
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y RLG++T T DA+ + P + D ++ A G+I QVPP SAIKV
Sbjct: 65 KVYEATIRLGQSTDTDDAEGEITATTPAGGVTDAALQAAVKGLTGQIMQVPPRVSAIKVD 124
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIE--RSLEDRQNLIFRVTCSKGTYIRSLCADFG 488
G + Y AR+G+ +EL PR +++ F + R +D ++ +TCS GTYIR+L D G
Sbjct: 125 GRRAYKMARKGQEVELKPRPVTVADFTVTAVRRHDDLIDVDAVITCSSGTYIRALARDLG 184
Query: 489 KALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
+ALG+ HLTALRR +G Y + A ++L E
Sbjct: 185 EALGTGGHLTALRRTRVGPYGLEQARTLEQLAE 217
>gi|296171640|ref|ZP_06852854.1| tRNA pseudouridine synthase B [Mycobacterium parascrofulaceum ATCC
BAA-614]
gi|295894001|gb|EFG73764.1| tRNA pseudouridine synthase B [Mycobacterium parascrofulaceum ATCC
BAA-614]
Length = 299
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 91/213 (42%), Positives = 129/213 (60%), Gaps = 2/213 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G TS V G+ RR+ ++VGHAGTLDPMATG+L++ V +ATK++ G
Sbjct: 10 IVVVDKPAGMTSHDVVGRCRRIFSTRRVGHAGTLDPMATGVLVIGVDRATKILGLLTGAS 69
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y+ RLG+ TST DA+ V+ H+ E I A A RG+I QVP SAIKV
Sbjct: 70 KSYAATIRLGQTTSTEDAEGEVLHSVSAAHLTREAIGAAVAGLRGDIEQVPSAVSAIKVE 129
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDI--ERSLEDRQNLIFRVTCSKGTYIRSLCADFG 488
G + Y R G+++EL+ R + I +F++ R ++ V CS GTY+R+L D G
Sbjct: 130 GRRAYRLVREGQAVELAARPVRIDRFEVCDVRPAGQLVDVDVEVDCSSGTYVRALARDVG 189
Query: 489 KALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
ALG HLTALRR +G+++ + A +L E
Sbjct: 190 AALGVGGHLTALRRTRVGRFTLEQARSLDDLAE 222
>gi|156334683|ref|XP_001619506.1| hypothetical protein NEMVEDRAFT_v1g5335 [Nematostella vectensis]
gi|156202835|gb|EDO27406.1| predicted protein [Nematostella vectensis]
Length = 174
Score = 179 bits (454), Expect = 3e-42, Method: Composition-based stats.
Identities = 91/173 (52%), Positives = 117/173 (67%), Gaps = 2/173 (1%)
Query: 337 KVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQRE 396
KVGHAGTLDP+A+GLLI+C GK TK + YQG +K Y+G F +G T ++D ++ V Q
Sbjct: 2 KVGHAGTLDPLASGLLIICTGKQTKNISEYQGQVKEYTGTFTIGSTTPSYDLETEVNQTF 61
Query: 397 PWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEKMYDKARRGESIELSPRRISIFQF 456
HI E I K F G I Q PP+FSA+K G+++Y+ AR+GE+ E+ R I+I +F
Sbjct: 62 STTHITKELIHKTTEQFIGSIQQQPPIFSALKKDGKRLYELARKGETTEIPTREITISEF 121
Query: 457 DIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKALGSCAHLTALRRDSIGQYS 509
+I DR + FRV CSKGTYIRSL DFGKAL S AHL+ALRR IG +S
Sbjct: 122 EITSI--DRLKIDFRVVCSKGTYIRSLANDFGKALQSGAHLSALRRTKIGNFS 172
>gi|399022547|ref|ZP_10724621.1| tRNA pseudouridine 55 synthase [Chryseobacterium sp. CF314]
gi|398084607|gb|EJL75285.1| tRNA pseudouridine 55 synthase [Chryseobacterium sp. CF314]
Length = 232
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 99/212 (46%), Positives = 126/212 (59%), Gaps = 9/212 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR-------RLVKVKKVGHAGTLDPMATGLLIVCVGKATK 361
G + L++KP WTSF K++ L K K+GHAGTLDP ATGLLIVC GK TK
Sbjct: 9 GHIFLLDKPLDWTSFQAVNKMKYKLKREFNLPKKFKIGHAGTLDPRATGLLIVCCGKFTK 68
Query: 362 LVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVP 421
+ Q K Y ++G T ++D + P I + HI +E IR+A F GEI Q P
Sbjct: 69 KIPEIQDAPKEYWTEIKIGVQTESYDTEKPEILNQDISHISEEQIREALGKFVGEIEQKP 128
Query: 422 PMFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIR 481
P FSAIK+ GE+ Y+ AR GE +E+ R+ +IF IE D ++ F V CSKGTYIR
Sbjct: 129 PAFSAIKIDGERAYNLARAGEEVEMKSRKTTIFY--IEDIKIDLPHISFMVGCSKGTYIR 186
Query: 482 SLCADFGKALGSCAHLTALRRDSIGQYSADDA 513
SL D G+ LG +LT LRR IG YS +DA
Sbjct: 187 SLAHDIGQELGVGGYLTQLRRTKIGDYSIEDA 218
>gi|410460719|ref|ZP_11314393.1| tRNA pseudouridine synthase B [Bacillus azotoformans LMG 9581]
gi|409926773|gb|EKN63927.1| tRNA pseudouridine synthase B [Bacillus azotoformans LMG 9581]
Length = 301
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 93/215 (43%), Positives = 137/215 (63%), Gaps = 5/215 (2%)
Query: 316 KPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSG 375
KP+G TS K+R+L+K KKVGH GTLDP G+L +CVG+ATK+ + K Y G
Sbjct: 9 KPRGMTSHDCVFKIRKLLKTKKVGHTGTLDPDVDGVLPICVGRATKVAEYLTESQKAYGG 68
Query: 376 VFRLGEATSTWDADSPVIQREP-WEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEKM 434
+G AT+T DA V++++P I E++++ F GEI QVPPMFSA+KV G+++
Sbjct: 69 EVTIGTATTTEDASGEVVEKKPIIGQITIEELKEVLHGFHGEITQVPPMFSAVKVNGKRL 128
Query: 435 YDKARRGESIELSPRRISIFQFDIERSLE--DRQNLIFR--VTCSKGTYIRSLCADFGKA 490
Y+ AR+G +E R I+I++F + S + D N FR V SKGTY+R+L D GKA
Sbjct: 129 YEFARQGIEVERPERTITIYEFKLLDSFDFLDHNNNSFRFFVKASKGTYVRTLAVDIGKA 188
Query: 491 LGSCAHLTALRRDSIGQYSADDAWEFKELEEAITK 525
LG AH++ L R + G ++++D F+E++E + K
Sbjct: 189 LGYPAHMSNLTRVASGSFTSEDCLTFEEIQERLEK 223
>gi|332670049|ref|YP_004453057.1| tRNA pseudouridine synthase B [Cellulomonas fimi ATCC 484]
gi|332339087|gb|AEE45670.1| tRNA pseudouridine synthase B [Cellulomonas fimi ATCC 484]
Length = 315
Score = 179 bits (454), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 95/225 (42%), Positives = 135/225 (60%), Gaps = 10/225 (4%)
Query: 301 PPTWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKAT 360
P DG +++V+KP+GWTS V + RRL +KVGHAGTLDPMATG+L++ +G+AT
Sbjct: 12 PTAADG----LLVVDKPQGWTSHDVVARTRRLAATRKVGHAGTLDPMATGVLVLGIGRAT 67
Query: 361 KLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQV 420
+L+ G K Y+ RLG AT+T DA+ V+ + D + A A+ G I QV
Sbjct: 68 RLLTYVVGADKEYTATVRLGVATTTDDAEGEVVAVRDASGVSDAGLAAAVAALTGPILQV 127
Query: 421 PPMFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIE---RSLEDRQNLI---FRVTC 474
P SAIKV GE+ Y + R GE +EL+ R +++ +FD+ R++ D ++ V C
Sbjct: 128 PSSVSAIKVAGERAYARVRAGEQVELAARPVTVSRFDVHGRRRAVVDGTAVLDVDVTVVC 187
Query: 475 SKGTYIRSLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKEL 519
S GTY+R+L D G ALG HLTALRR +G + D A ++L
Sbjct: 188 SSGTYVRALARDVGAALGVGGHLTALRRTRVGGFGLDVARTLEQL 232
>gi|53711348|ref|YP_097340.1| tRNA pseudouridine synthase B [Bacteroides fragilis YCH46]
gi|60679665|ref|YP_209809.1| tRNA pseudouridine synthase [Bacteroides fragilis NCTC 9343]
gi|265764792|ref|ZP_06093067.1| tRNA pseudouridine synthase B [Bacteroides sp. 2_1_16]
gi|336407598|ref|ZP_08588095.1| tRNA pseudouridine synthase B [Bacteroides sp. 2_1_56FAA]
gi|375356450|ref|YP_005109221.1| putative tRNA pseudouridine synthase [Bacteroides fragilis 638R]
gi|383116413|ref|ZP_09937163.1| tRNA pseudouridine synthase B [Bacteroides sp. 3_2_5]
gi|423248076|ref|ZP_17229092.1| tRNA pseudouridine synthase B [Bacteroides fragilis CL03T00C08]
gi|423253024|ref|ZP_17233955.1| tRNA pseudouridine synthase B [Bacteroides fragilis CL03T12C07]
gi|423259590|ref|ZP_17240513.1| tRNA pseudouridine synthase B [Bacteroides fragilis CL07T00C01]
gi|423263437|ref|ZP_17242440.1| tRNA pseudouridine synthase B [Bacteroides fragilis CL07T12C05]
gi|423270044|ref|ZP_17249016.1| tRNA pseudouridine synthase B [Bacteroides fragilis CL05T00C42]
gi|423272503|ref|ZP_17251450.1| tRNA pseudouridine synthase B [Bacteroides fragilis CL05T12C13]
gi|423282617|ref|ZP_17261502.1| tRNA pseudouridine synthase B [Bacteroides fragilis HMW 615]
gi|62901266|sp|Q650L8.1|TRUB_BACFR RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|81317261|sp|Q5LJ29.1|TRUB_BACFN RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|52214213|dbj|BAD46806.1| tRNA pseudouridine synthase B [Bacteroides fragilis YCH46]
gi|60491099|emb|CAH05847.1| putative tRNA pseudouridine synthase [Bacteroides fragilis NCTC
9343]
gi|251948322|gb|EES88604.1| tRNA pseudouridine synthase B [Bacteroides sp. 3_2_5]
gi|263254176|gb|EEZ25610.1| tRNA pseudouridine synthase B [Bacteroides sp. 2_1_16]
gi|301161130|emb|CBW20668.1| putative tRNA pseudouridine synthase [Bacteroides fragilis 638R]
gi|335947502|gb|EGN09293.1| tRNA pseudouridine synthase B [Bacteroides sp. 2_1_56FAA]
gi|387776049|gb|EIK38150.1| tRNA pseudouridine synthase B [Bacteroides fragilis CL07T00C01]
gi|392657551|gb|EIY51184.1| tRNA pseudouridine synthase B [Bacteroides fragilis CL03T12C07]
gi|392660793|gb|EIY54394.1| tRNA pseudouridine synthase B [Bacteroides fragilis CL03T00C08]
gi|392699711|gb|EIY92882.1| tRNA pseudouridine synthase B [Bacteroides fragilis CL05T00C42]
gi|392707487|gb|EIZ00605.1| tRNA pseudouridine synthase B [Bacteroides fragilis CL07T12C05]
gi|392708769|gb|EIZ01873.1| tRNA pseudouridine synthase B [Bacteroides fragilis CL05T12C13]
gi|404582185|gb|EKA86880.1| tRNA pseudouridine synthase B [Bacteroides fragilis HMW 615]
Length = 233
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 95/204 (46%), Positives = 126/204 (61%), Gaps = 8/204 (3%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR----RLVKVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G ++ NKP GWTSF V G R R +KVKK VGHAGTLDP+ATG++IVC GKATK
Sbjct: 6 GEVLYFNKPLGWTSFKVVGHARYHMCRRMKVKKLKVGHAGTLDPLATGVMIVCTGKATKR 65
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ +Q K Y +LG T ++D + + P EHI E + K +F GEI Q+PP
Sbjct: 66 IEEFQYHTKEYVATIQLGATTPSYDLEHEIDATYPTEHITRELVEKTLKTFVGEIQQIPP 125
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRS 482
FSA KV G + YD AR+G+ +EL P+ + I + ++ + + RV CSKGTYIR+
Sbjct: 126 AFSACKVDGARAYDLARKGQEVELKPKLLVIDEIELLEC--NLPEIKIRVVCSKGTYIRA 183
Query: 483 LCADFGKALGSCAHLTALRRDSIG 506
L D G+AL S AHLT L R +G
Sbjct: 184 LARDIGEALQSGAHLTGLIRTRVG 207
>gi|170782211|ref|YP_001710544.1| tRNA pseudouridine synthase B [Clavibacter michiganensis subsp.
sepedonicus]
gi|169156780|emb|CAQ01943.1| tRNA pseudouridine synthase [Clavibacter michiganensis subsp.
sepedonicus]
Length = 319
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 96/235 (40%), Positives = 134/235 (57%), Gaps = 17/235 (7%)
Query: 301 PPTWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKAT 360
P T G ++L++K WTS + + RRL +KVGHAGTLDPMATGL+I+ V +T
Sbjct: 10 PSTASG----LLLIDKRGEWTSHDLVARTRRLAGTRKVGHAGTLDPMATGLMILGVNSST 65
Query: 361 KLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKD---EDIRKAAASFRGEI 417
+L+ G+ K Y RLG AT+T D + V+ R I+D D+ +A A RG I
Sbjct: 66 RLLTYLVGLDKEYLATIRLGRATTTDDREGEVVSRAEPGRIRDLAVADVERAIADLRGTI 125
Query: 418 WQVPPMFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIER----------SLEDRQN 467
QVP SAIKV G++ Y + R GE +EL+ R +++ FD+ R + +
Sbjct: 126 SQVPSAVSAIKVDGKRAYARVRAGEEVELAAREVTVSAFDVLRFDAVEAEEGEEDGAQLD 185
Query: 468 LIFRVTCSKGTYIRSLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEA 522
L R+TCS GTY+R+L D G+ALG HLTALRR +G + DDA ++ A
Sbjct: 186 LSVRITCSSGTYVRALARDLGRALGVGGHLTALRRTRVGPFHVDDAVAIDDMVVA 240
>gi|296129361|ref|YP_003636611.1| tRNA pseudouridine synthase B [Cellulomonas flavigena DSM 20109]
gi|296021176|gb|ADG74412.1| tRNA pseudouridine synthase B [Cellulomonas flavigena DSM 20109]
Length = 336
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 93/225 (41%), Positives = 130/225 (57%), Gaps = 10/225 (4%)
Query: 301 PPTWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKAT 360
P DG +++V+KP GWTS V ++RRL +KVGHAGTLDPMATG+L+V +G+AT
Sbjct: 35 PTAADG----LLVVDKPAGWTSHDVVARVRRLASTRKVGHAGTLDPMATGVLVVGIGRAT 90
Query: 361 KLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQV 420
+L+ G K Y+ RLG T+T DA+ + R I D+ A+ G++ QV
Sbjct: 91 RLLTYVTGADKDYTATVRLGVVTTTDDAEGETLARTDASGIARGDLDAQVAALTGDVQQV 150
Query: 421 PPMFSAIKVGGEKMYDKARRGESIELSPRRISIFQF---DIERSLEDRQNLI---FRVTC 474
P SAIKV G++ Y + R GE +EL+ R + + +F D+ + D ++ VTC
Sbjct: 151 PSSVSAIKVDGQRAYARVRAGEDVELAARPVHVARFAVLDVRPGVVDEVPVLDVDVEVTC 210
Query: 475 SKGTYIRSLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKEL 519
S GTY+R+L D G ALG HLTALRR + Y + A EL
Sbjct: 211 SSGTYVRALARDLGAALGVGGHLTALRRTRVAGYGIEHARTLDEL 255
>gi|258648185|ref|ZP_05735654.1| tRNA pseudouridine synthase B [Prevotella tannerae ATCC 51259]
gi|260852069|gb|EEX71938.1| tRNA pseudouridine synthase B [Prevotella tannerae ATCC 51259]
Length = 249
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 96/220 (43%), Positives = 134/220 (60%), Gaps = 9/220 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVK------KVGHAGTLDPMATGLLIVCVGKATKL 362
G ++ +KP TSF V G++RRL+ K +VGHAGTLDP+ATG+LI+C G+ATK
Sbjct: 6 GRILAFDKPYKMTSFGVVGRVRRLLTQKMDGRKIRVGHAGTLDPLATGVLILCTGQATKQ 65
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ Q K Y +LGE T ++D + PV + HI E +A F G+I QVPP
Sbjct: 66 IESLQKNTKEYIAELKLGETTPSFDLEHPVDKTFSTAHITAESFEEAVRKFEGDILQVPP 125
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDI-ERSLEDRQNLIFRVTCSKGTYIR 481
+FSA KV G++ YD AR+G ++L+ + I I + DI E L D L + C KGTYIR
Sbjct: 126 VFSACKVNGDRAYDLARKGRDVQLAAKPIRIEKIDILELRLPDYARL--HIVCGKGTYIR 183
Query: 482 SLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
SL D G+AL S AH+T+LRR +G S ++ + + EE
Sbjct: 184 SLVRDIGEALQSGAHMTSLRRTRVGDISVENCFTLEAFEE 223
>gi|441207386|ref|ZP_20973515.1| tRNA pseudouridine(55) synthase [Mycobacterium smegmatis MKD8]
gi|440627934|gb|ELQ89737.1| tRNA pseudouridine(55) synthase [Mycobacterium smegmatis MKD8]
Length = 282
Score = 179 bits (453), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 95/210 (45%), Positives = 126/210 (60%), Gaps = 11/210 (5%)
Query: 320 WTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSGVFRL 379
TS V G+ RRL +KVGHAGTLDPMATG+L++ + +ATK++ K Y+ RL
Sbjct: 1 MTSHDVVGRCRRLFGTRKVGHAGTLDPMATGVLVIGIERATKILGLLTATDKSYAATIRL 60
Query: 380 GEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEKMYDKAR 439
G T+T DA+ V+ H+ DE I A A RG+I QVP SAIKVGG++ Y AR
Sbjct: 61 GRTTTTEDAEGEVVADVSARHVTDEQIHAAVADLRGDIEQVPSAVSAIKVGGQRAYKLAR 120
Query: 440 RGESIELSPRRISIFQFDIERSLEDRQ--------NLIFRVTCSKGTYIRSLCADFGKAL 491
G+S+EL+ R + I +FD+ L+ R+ ++ V CS GTYIR+L D G AL
Sbjct: 121 EGQSVELAARPVRIDRFDV---LDIRRPDDFPDFVDVDVEVDCSSGTYIRALARDVGAAL 177
Query: 492 GSCAHLTALRRDSIGQYSADDAWEFKELEE 521
G HLTALRR +G+Y D+A EL E
Sbjct: 178 GVGGHLTALRRTRVGRYGLDEAHTLDELAE 207
>gi|340347529|ref|ZP_08670637.1| tRNA pseudouridine synthase B [Prevotella dentalis DSM 3688]
gi|433653556|ref|YP_007297410.1| tRNA pseudouridine 55 synthase [Prevotella dentalis DSM 3688]
gi|339609225|gb|EGQ14100.1| tRNA pseudouridine synthase B [Prevotella dentalis DSM 3688]
gi|433304089|gb|AGB29904.1| tRNA pseudouridine 55 synthase [Prevotella dentalis DSM 3688]
Length = 235
Score = 178 bits (452), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 90/218 (41%), Positives = 126/218 (57%), Gaps = 5/218 (2%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVK-----KVGHAGTLDPMATGLLIVCVGKATKLV 363
G ++ ++KP +SF +R L+ K KVGHAGTLDP+ATG+LI+C GK TK +
Sbjct: 6 GEIIAIDKPFRMSSFRALAHVRYLLSRKLGRKVKVGHAGTLDPLATGVLILCTGKCTKQI 65
Query: 364 DRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPM 423
+R Q K Y+ +LG T ++D + V PW HI E + A F G++ QVPP
Sbjct: 66 ERLQAHTKEYTATLQLGATTDSYDREHSVNHTYPWRHITREMVLDTLARFEGDVEQVPPT 125
Query: 424 FSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSL 483
+SA KV G + Y R GE++EL P+ + I + ++ R + RV C KGTYIR+L
Sbjct: 126 YSACKVDGRRAYHLRRSGEAVELKPKTVRIDRVELTRFDPATAQMSIRVVCGKGTYIRAL 185
Query: 484 CADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
D G+ALGS A LT LRR +G + DD+ F E+
Sbjct: 186 ARDIGRALGSGAFLTELRRTRVGDFRVDDSIGFDHFEQ 223
>gi|197303050|ref|ZP_03168098.1| hypothetical protein RUMLAC_01777 [Ruminococcus lactaris ATCC
29176]
gi|197297905|gb|EDY32457.1| tRNA pseudouridine synthase B [Ruminococcus lactaris ATCC 29176]
Length = 304
Score = 178 bits (452), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 86/211 (40%), Positives = 131/211 (62%), Gaps = 2/211 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ V K KG+TS V LR++ KK+GH GTLDP ATG+L VC+G+ATKL D
Sbjct: 4 IINVYKEKGYTSHDVVAVLRKIAGQKKIGHTGTLDPDATGVLPVCLGRATKLCDLLTDRD 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y V LG+ T T D +++ +P +H+ + ++ K SF+G Q+PPM+SA+KV
Sbjct: 64 KTYEAVLLLGKTTDTQDISGAILKEQPTDHLNEAEVTKVIESFKGTYDQIPPMYSALKVN 123
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKA 490
G+K+Y+ AR G+++E R+++I+Q I+ R + VTCSKGTYIR+LC D G
Sbjct: 124 GKKLYELAREGKTVERKSRKVTIYQIHIKEIQLPRVRM--EVTCSKGTYIRTLCHDIGNL 181
Query: 491 LGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
LG+ + L R +G++ D+ + +EL +
Sbjct: 182 LGTGGCMEELTRTKVGRFELKDSLKLEELSD 212
>gi|330466370|ref|YP_004404113.1| tRNA pseudouridine synthase B [Verrucosispora maris AB-18-032]
gi|328809341|gb|AEB43513.1| tRNA pseudouridine synthase B [Verrucosispora maris AB-18-032]
Length = 294
Score = 178 bits (452), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 94/214 (43%), Positives = 136/214 (63%), Gaps = 3/214 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++V+KP G TS V +LRRL + ++VGH GTLDPMATG+L++ VG+AT+L+ G
Sbjct: 6 LIVVDKPGGMTSHDVVARLRRLARTRRVGHGGTLDPMATGVLVIGVGRATRLLTYVIGAD 65
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y+ RLG++T T DA+ VI P + DE IR A A+ GEI QVP SAIK+
Sbjct: 66 KTYAATIRLGQSTVTDDAEGDVISTAPAGGVTDEAIRAALAALTGEIDQVPSAVSAIKIN 125
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLI---FRVTCSKGTYIRSLCADF 487
G++ Y + R GES++L RR+++ + D+ D+ +L+ V CS GTYIR++ D
Sbjct: 126 GQRAYKRVRDGESVDLPARRVTVSRLDVLAIRRDQPDLVDVDVEVACSTGTYIRAIARDA 185
Query: 488 GKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
G AL HLTALRR ++G ++ +A ELE+
Sbjct: 186 GLALQVGGHLTALRRTAVGGFTLAEAATLDELEQ 219
>gi|427439048|ref|ZP_18923790.1| tRNA pseudouridine synthase B [Pediococcus lolii NGRI 0510Q]
gi|425788426|dbj|GAC44578.1| tRNA pseudouridine synthase B [Pediococcus lolii NGRI 0510Q]
Length = 301
Score = 178 bits (452), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 92/219 (42%), Positives = 130/219 (59%), Gaps = 7/219 (3%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ +NK +G TS V K+R +++ KKVGH+GTLDP G+L VCVG+ATK+VD
Sbjct: 4 IIPINKERGMTSHDVVAKVRGILRTKKVGHSGTLDPSVDGVLPVCVGRATKVVDYLMRFG 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG AT+T D D V++R+P + D I A GE+ Q+PPM+SA+KV
Sbjct: 64 KTYQGSITLGLATTTEDLDGEVVERQPLSKPLTDAQIDAALKQMTGELTQIPPMYSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIERSLED------RQNLIFRVTCSKGTYIRSL 483
G K+Y+ AR GE++E R+I ++QF R E+ Q + F V C KGTY+R+L
Sbjct: 124 NGRKLYEYARAGETVERPKRKIQVYQFKQIRPTEEFDEEKGEQTIYFEVQCGKGTYVRTL 183
Query: 484 CADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEA 522
DFG+ G A ++ L R S G + + ELE+A
Sbjct: 184 AVDFGRQFGLPAVMSDLTRTSSGGFELKECVTLAELEQA 222
>gi|313885279|ref|ZP_07819030.1| tRNA pseudouridine synthase B [Eremococcus coleocola
ACS-139-V-Col8]
gi|312619385|gb|EFR30823.1| tRNA pseudouridine synthase B [Eremococcus coleocola
ACS-139-V-Col8]
Length = 305
Score = 178 bits (452), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 92/215 (42%), Positives = 133/215 (61%), Gaps = 6/215 (2%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
+NKPKG TS V K R+L+K+KK+GH GTLDP G+L++C+GKATKLV+ K Y
Sbjct: 9 INKPKGMTSHDVVFKARKLLKMKKIGHTGTLDPDVEGVLVLCLGKATKLVNYLMESPKAY 68
Query: 374 SGVFRLGEATSTWDADSPVIQREP-WEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGE 432
G LG+AT T DA VI +P + D + +A A+ GEI Q+PP +SA+KV G+
Sbjct: 69 QGGIFLGQATETEDASGAVIASQPVLNPLTDAQVDQAMAAMTGEIQQIPPYYSAVKVKGK 128
Query: 433 KMYDKARRGESIELSPRRISIFQFDIERSL-----EDRQNLIFRVTCSKGTYIRSLCADF 487
++Y+ AR G+ +E R+ I+ F + + + Q+ F+VTCSKGTY+R+L D
Sbjct: 129 RLYEYARAGQRVERPVRQAQIYDFQRQGATLYDPQDQSQSWNFQVTCSKGTYVRTLAVDL 188
Query: 488 GKALGSCAHLTALRRDSIGQYSADDAWEFKELEEA 522
GK+LG AH+T L+R +S D + L++A
Sbjct: 189 GKSLGYPAHMTWLQRTMAAGFSLDQTYSLAWLDQA 223
>gi|148657854|ref|YP_001278059.1| tRNA pseudouridine synthase B [Roseiflexus sp. RS-1]
gi|148569964|gb|ABQ92109.1| tRNA pseudouridine synthase B [Roseiflexus sp. RS-1]
Length = 300
Score = 178 bits (452), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 90/209 (43%), Positives = 126/209 (60%), Gaps = 3/209 (1%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQG-MIKG 372
++KP G TS V ++RRL ++VGHAGTLDP ATG+L+V +G AT+L++ Q +K
Sbjct: 7 IDKPAGMTSHDVVARIRRLSGQRRVGHAGTLDPAATGVLVVALGGATRLIEYVQHQTLKQ 66
Query: 373 YSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGE 432
Y LG T+T DAD +I R P + E + +A A RG IWQ PPM++A+ G
Sbjct: 67 YRATVCLGVTTTTDDADGEIIARHPLPPLDRETVERALAPLRGTIWQTPPMYAALHHEGR 126
Query: 433 KMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKALG 492
++Y+ AR G ++E PR++ I + D+ D L V C GTYIR+L D G ALG
Sbjct: 127 RLYELARAGVTVETPPRQVHIERLDLVAF--DPPLLTLDVVCGSGTYIRALARDLGAALG 184
Query: 493 SCAHLTALRRDSIGQYSADDAWEFKELEE 521
AHL ALRR ++G + +DA + LEE
Sbjct: 185 CGAHLAALRRTAVGTFRIEDALPLRVLEE 213
>gi|384045255|ref|YP_005493272.1| TRNA pseudouridine synthase B [Bacillus megaterium WSH-002]
gi|345442946|gb|AEN87963.1| TRNA pseudouridine synthase B [Bacillus megaterium WSH-002]
Length = 305
Score = 178 bits (451), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 92/220 (41%), Positives = 140/220 (63%), Gaps = 6/220 (2%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQG 368
G +VL +KP G TS K+R+L++ KKVGH GTLDP TG+L +C+G+ATK+V+ G
Sbjct: 3 GVLVL-HKPAGLTSHDCVFKVRKLLRTKKVGHTGTLDPDVTGVLPICIGRATKIVEYLTG 61
Query: 369 MIKGYSGVFRLGEATSTWDADSPVI-QREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAI 427
K Y G LG +T+T D+ V+ +++ + I + +S GE+ QVPPM+SA+
Sbjct: 62 ATKTYEGEVTLGFSTTTEDSSGEVVEEKKVADSFSRAQIEEVLSSMTGELQQVPPMYSAV 121
Query: 428 KVGGEKMYDKARRGESIELSPRRISIFQFDI---ERSLEDRQ-NLIFRVTCSKGTYIRSL 483
KV G+K+Y+ AR+G +E R I I+ F++ + E Q + FRVTCSKGTY+R+L
Sbjct: 122 KVKGKKLYEYARQGIEVERPVRTIHIYNFELLDNRATFEGEQISFKFRVTCSKGTYVRTL 181
Query: 484 CADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
G+ALG +H++ L+R GQ+S +D F+++E A+
Sbjct: 182 AVMIGEALGYPSHMSYLQRTGSGQFSLEDCMTFEDIERAV 221
>gi|340756957|ref|ZP_08693561.1| pseudouridylate synthase [Fusobacterium varium ATCC 27725]
gi|251834223|gb|EES62786.1| pseudouridylate synthase [Fusobacterium varium ATCC 27725]
Length = 286
Score = 178 bits (451), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 91/210 (43%), Positives = 132/210 (62%), Gaps = 2/210 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ VNKP G TSF V KLRR++ +K+GH GTLDP+A G+L+VC+GKATKLV +G
Sbjct: 4 IINVNKPSGITSFDVVRKLRRILHERKIGHTGTLDPLAEGVLVVCIGKATKLVQDIEGYE 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y+ F LG T T+D + +I++ ++ ++ F GEI Q+PPM+SA+KV
Sbjct: 64 KTYTAGFELGYRTDTYDTEGQIIEKREINNVTLGELENVLKKFIGEIEQIPPMYSALKVD 123
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKA 490
G+K+Y+ AR+G +E R I I DI D R SKGTYIRSL D GKA
Sbjct: 124 GKKLYELARQGIEVERKARLIEIKFIDIVEF--DGVKGKIRCGVSKGTYIRSLIDDMGKA 181
Query: 491 LGSCAHLTALRRDSIGQYSADDAWEFKELE 520
LG+ A +T+L R+ +G + +D++ +++E
Sbjct: 182 LGTLATMTSLVREKVGSSNIEDSYTLEDIE 211
>gi|354604245|ref|ZP_09022236.1| tRNA pseudouridine synthase B [Alistipes indistinctus YIT 12060]
gi|353348012|gb|EHB92286.1| tRNA pseudouridine synthase B [Alistipes indistinctus YIT 12060]
Length = 245
Score = 178 bits (451), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 95/228 (41%), Positives = 134/228 (58%), Gaps = 7/228 (3%)
Query: 302 PTWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVK-----KVGHAGTLDPMATGLLIVCV 356
P + P G ++ V+KP GWTS V K+R L++ KVGHAGTLDP+ATG+LIVC+
Sbjct: 2 PDFPFPEGYVLPVDKPLGWTSSDVVRKMRVLLRRLGHRKIKVGHAGTLDPLATGVLIVCI 61
Query: 357 GKATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGE 416
G+ATK VD Q K Y RLG T ++D + PV Q P+ H+ ++ I A GE
Sbjct: 62 GRATKRVDELQAEEKEYLTTVRLGATTPSYDLEHPVDQTYPYGHVTEKSILAALQEMEGE 121
Query: 417 IWQVPPMFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSK 476
Q PP++SA + G + Y+ AR GE + + ++I++ ER D ++ RV CSK
Sbjct: 122 QLQEPPVYSAKMIEGRRAYEYAREGEEVRMRRALVNIYEIAPERI--DLPDVTLRVRCSK 179
Query: 477 GTYIRSLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAIT 524
GTYIRS+ D G+ L HLTALRR G +S D + +E+E ++
Sbjct: 180 GTYIRSIARDLGEKLSCGGHLTALRRTRSGAFSEQDLYTIEEVERMLS 227
>gi|346224777|ref|ZP_08845919.1| tRNA pseudouridine synthase B [Anaerophaga thermohalophila DSM
12881]
Length = 265
Score = 178 bits (451), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 102/214 (47%), Positives = 132/214 (61%), Gaps = 14/214 (6%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR-RL-----VKVKKVGHAGTLDPMATGLLIVCVGKATKL 362
G + L++KP WTSF V K+R RL +K KVGHAGTLDP+ATGL+IVC GKATK
Sbjct: 34 GRIFLIDKPYRWTSFDVVKKIRSRLQHGLKIKKIKVGHAGTLDPLATGLVIVCTGKATKN 93
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
+DR K Y + G T ++D ++ V + P+ HI+ ++I A F GE Q+PP
Sbjct: 94 IDRLMAEEKHYFAKVKFGATTPSFDLETEVDREYPYAHIRKDEIETALNRFLGEQQQIPP 153
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNL---IFRVTCSKGTY 479
FSAI++ G++ Y AR+GE +E+ R + IF E L + QN IF V CSKGTY
Sbjct: 154 GFSAIRIDGKRAYQMARKGEEVEMKAREV-IFH---ELKLLNYQNSEAEIF-VRCSKGTY 208
Query: 480 IRSLCADFGKALGSCAHLTALRRDSIGQYSADDA 513
IRS D G ALGS A+L+ LRR IG YS D A
Sbjct: 209 IRSFARDLGIALGSGAYLSGLRRTVIGNYSIDKA 242
>gi|56419801|ref|YP_147119.1| tRNA pseudouridine synthase B [Geobacillus kaustophilus HTA426]
gi|62901181|sp|Q5L0I5.1|TRUB_GEOKA RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|56379643|dbj|BAD75551.1| tRNA pseudouridine 5S synthase [Geobacillus kaustophilus HTA426]
Length = 285
Score = 178 bits (451), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 92/215 (42%), Positives = 134/215 (62%), Gaps = 5/215 (2%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L+NKPKG TS K+RRL+ VKK GH GTLDP +G+L +C+GKAT++ + G
Sbjct: 4 VLLLNKPKGMTSHDCVAKVRRLLGVKKAGHTGTLDPNVSGVLPICLGKATRIAEFLTGTT 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG AT+T DAD +I P + I +I S GEI Q PPM+SA+KV
Sbjct: 64 KTYEGKVTLGAATTTEDADGDIIAARPVDRPIARAEIEAVFDSLTGEIEQTPPMYSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDI----ERSLEDRQNLIFRVTCSKGTYIRSLCA 485
GG+K+Y+ AR G +E RR++I++ ++ E+ + + FRVTCSKGTY+R+L
Sbjct: 124 GGKKLYEYARAGIEVERPTRRVTIYELELLDEREQFFGETVSFRFRVTCSKGTYVRTLAV 183
Query: 486 DFGKALGSCAHLTALRRDSIGQYSADDAWEFKELE 520
G+ LG AH++ L R + G + +D F+++E
Sbjct: 184 MIGERLGYPAHMSDLIRTASGPFRLEDCVTFEDVE 218
>gi|154494348|ref|ZP_02033668.1| hypothetical protein PARMER_03703 [Parabacteroides merdae ATCC
43184]
gi|423346921|ref|ZP_17324608.1| tRNA pseudouridine synthase B [Parabacteroides merdae CL03T12C32]
gi|423725465|ref|ZP_17699602.1| tRNA pseudouridine synthase B [Parabacteroides merdae CL09T00C40]
gi|154085792|gb|EDN84837.1| tRNA pseudouridine synthase B [Parabacteroides merdae ATCC 43184]
gi|409218582|gb|EKN11550.1| tRNA pseudouridine synthase B [Parabacteroides merdae CL03T12C32]
gi|409234589|gb|EKN27417.1| tRNA pseudouridine synthase B [Parabacteroides merdae CL09T00C40]
Length = 236
Score = 178 bits (451), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 96/207 (46%), Positives = 127/207 (61%), Gaps = 8/207 (3%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR----RLVKVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G ++ NKP WTSF + K R R +KVKK VGHAGTLDP+ATG++IVC GKATK
Sbjct: 6 GEVLYFNKPLKWTSFDLVNKFRYKLSRKLKVKKIKVGHAGTLDPLATGVMIVCTGKATKR 65
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
+D +Q K Y +LGE T ++D + + P EHI E++ K SF G I Q+PP
Sbjct: 66 IDEFQYQTKEYVATLKLGETTPSFDLEKEIDGVYPTEHITREEVEKVLQSFVGTIQQIPP 125
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRS 482
+FSA KV G++ Y+ AR+GE +EL + + I + ++ D + RV CSKGTYIR+
Sbjct: 126 VFSACKVDGKRAYELARKGEEVELKSKTLVIDEMELLEC--DLPVIKIRVVCSKGTYIRA 183
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYS 509
L D G AL S AHL AL R IG +
Sbjct: 184 LARDIGVALQSGAHLIALERTRIGDIT 210
>gi|257453572|ref|ZP_05618862.1| tRNA pseudouridine synthase B [Enhydrobacter aerosaccus SK60]
gi|257449030|gb|EEV23983.1| tRNA pseudouridine synthase B [Enhydrobacter aerosaccus SK60]
Length = 316
Score = 178 bits (451), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 92/223 (41%), Positives = 127/223 (56%), Gaps = 7/223 (3%)
Query: 301 PPTWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKV-----KKVGHAGTLDPMATGLLIVC 355
P T ++L++KP+G TS V K++ L+K KK GH GTLDPMATGLL +C
Sbjct: 5 PKTAKSIVSGVLLIDKPQGMTSQQVVSKVKYLLKSDVHDSKKAGHTGTLDPMATGLLPIC 64
Query: 356 VGKATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRG 415
+G+ATK IK Y + +LGE T T DA+ +I P H+ ++ F G
Sbjct: 65 LGEATKFSHYQLDAIKSYHAIIKLGEQTDTGDAEGEIIATSPVPHVTQAMLQSVTEQFLG 124
Query: 416 EIWQVPPMFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCS 475
EI QVPPM+SA+K G+K+Y+ AR G +E + R + I++ + + Q L VTCS
Sbjct: 125 EIMQVPPMYSALKKDGKKLYELAREGIEVERAARPLIIYELSL--TPLSAQQLQLSVTCS 182
Query: 476 KGTYIRSLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKE 518
KGTY+R L D KALG+ HLTALRR G + +A +
Sbjct: 183 KGTYVRVLAEDIAKALGTLGHLTALRRIQTGDFEIANAITLAD 225
>gi|270290309|ref|ZP_06196534.1| tRNA pseudouridine synthase B [Pediococcus acidilactici 7_4]
gi|418069085|ref|ZP_12706365.1| tRNA pseudouridine synthase B [Pediococcus acidilactici MA18/5M]
gi|270281090|gb|EFA26923.1| tRNA pseudouridine synthase B [Pediococcus acidilactici 7_4]
gi|357537818|gb|EHJ21841.1| tRNA pseudouridine synthase B [Pediococcus acidilactici MA18/5M]
Length = 300
Score = 178 bits (451), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 92/218 (42%), Positives = 129/218 (59%), Gaps = 6/218 (2%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ +NK +G TS V K+R +++ KKVGH+GTLDP G+L VCVG+ATK+VD
Sbjct: 4 IIPINKERGMTSHDVVAKVRGILRTKKVGHSGTLDPSVDGVLPVCVGRATKVVDYLMRFG 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG AT+T D D V++R+P + D I A GE+ Q+PPM+SA+KV
Sbjct: 64 KTYQGSITLGLATTTEDLDGEVVERQPLSKPLTDAQIDAALKQMTGELTQIPPMYSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIERSLE-----DRQNLIFRVTCSKGTYIRSLC 484
G K+Y+ AR GE++E R+I ++QF R E Q + F V C KGTY+R+L
Sbjct: 124 NGRKLYEYARAGETVERPKRKIQVYQFKQIRPTEFDEEKGEQTIYFEVQCGKGTYVRTLA 183
Query: 485 ADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEA 522
DFG+ G A ++ L R S G + + ELE+A
Sbjct: 184 VDFGRQFGLPAVMSDLTRTSSGGFELKECVTLAELEQA 221
>gi|295706240|ref|YP_003599315.1| tRNA pseudouridine synthase B [Bacillus megaterium DSM 319]
gi|294803899|gb|ADF40965.1| tRNA pseudouridine synthase B [Bacillus megaterium DSM 319]
Length = 305
Score = 177 bits (450), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 90/221 (40%), Positives = 141/221 (63%), Gaps = 11/221 (4%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++++KP G TS K+R+L++ KKVGH GTLDP TG+L +C+G+ATK+V+ G
Sbjct: 4 VLILHKPAGLTSHDCVFKVRKLLRTKKVGHTGTLDPDVTGVLPICIGRATKIVEYLTGAT 63
Query: 371 KGYSGVFRLGEATSTWDADSPVI-QREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T D+ V+ +++ + I + +S GE+ QVPPM+SA+KV
Sbjct: 64 KTYEGEVTLGFSTTTEDSSGEVVEEKKVVDSFSRAQIEEVLSSMTGELQQVPPMYSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQ-------NLIFRVTCSKGTYIRS 482
G+K+Y+ AR+G +E R I I+ F++ L+DR + FRVTCSKGTY+R+
Sbjct: 124 KGKKLYEYARQGIEVERPVRTIHIYNFEL---LDDRAAFEGEQISFKFRVTCSKGTYVRT 180
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
L G+ALG +H++ L+R GQ+S +D F+++E A+
Sbjct: 181 LAVMIGEALGYPSHMSYLQRTGSGQFSLEDCVTFEDIERAV 221
>gi|290770195|gb|ADD61953.1| putative protein [uncultured organism]
Length = 304
Score = 177 bits (450), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 92/208 (44%), Positives = 133/208 (63%), Gaps = 1/208 (0%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
VNKP+GWTSF V KLR ++++K++GHAGTLDPMATG+L V VG+ATK D K Y
Sbjct: 16 VNKPEGWTSFDVIAKLRGVLRIKRLGHAGTLDPMATGVLPVFVGRATKACDIIPDRRKIY 75
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEK 433
+ F+LG +T T D+ V++ + + +++ KA + F G+I QVPPM+SAIKV G+K
Sbjct: 76 TAGFQLGVSTDTLDSTGKVLETSD-KSVSFQELEKAKSGFVGDIMQVPPMYSAIKVNGKK 134
Query: 434 MYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKALGS 493
+Y+ AR G+ IE PR + I +I+ E ++ + +V C KGTYIRS+ AD G+ LG
Sbjct: 135 LYELAREGKEIEREPRAVHIDSIEIKNYDETSRSGVIKVDCEKGTYIRSVIADIGEKLGC 194
Query: 494 CAHLTALRRDSIGQYSADDAWEFKELEE 521
+T+L R G D + +E+ E
Sbjct: 195 GGMMTSLERSYSGGVDIKDCYTIEEIAE 222
>gi|429725907|ref|ZP_19260720.1| tRNA pseudouridine synthase B [Prevotella sp. oral taxon 473 str.
F0040]
gi|429148455|gb|EKX91461.1| tRNA pseudouridine synthase B [Prevotella sp. oral taxon 473 str.
F0040]
Length = 239
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 93/221 (42%), Positives = 135/221 (61%), Gaps = 10/221 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRL-------VKVKKVGHAGTLDPMATGLLIVCVGKATK 361
G ++ +KP G TSF + K+R L VK+K VGHAGTLDP+A+G+++VC G+ATK
Sbjct: 6 GQILTFDKPLGLTSFQLVAKVRWLLTRAMGGVKIK-VGHAGTLDPLASGVMVVCTGRATK 64
Query: 362 LVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVP 421
+D Q +K Y RLG T ++D + P+ HI + + F G+IWQ P
Sbjct: 65 QIDTLQAGVKEYIATLRLGATTPSFDLEHPIDYTYATCHIDHQLVETQLKKFIGDIWQTP 124
Query: 422 PMFSAIKVGGEKMYDKARRGESIELSPRRISIFQFD-IERSLEDRQN-LIFRVTCSKGTY 479
P FSA+KV G++ YD AR+G+ +EL P+ + I + + ++ +L L RV CSKGTY
Sbjct: 125 PAFSAVKVDGKRAYDLARKGKEVELKPKLLRIDELELLDCALAGADKFLTIRVVCSKGTY 184
Query: 480 IRSLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELE 520
IR+L D G+ALGS AHLT+LRR +G + +D + + E
Sbjct: 185 IRALARDIGEALGSGAHLTSLRRTRVGDFRVEDCMQLDDFE 225
>gi|407474009|ref|YP_006788409.1| tRNA pseudouridine synthase B [Clostridium acidurici 9a]
gi|407050517|gb|AFS78562.1| tRNA pseudouridine synthase B [Clostridium acidurici 9a]
Length = 306
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 84/209 (40%), Positives = 132/209 (63%), Gaps = 2/209 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ V KP G TS V +R+ +KKVGH GTLDP A G+L +C+GKAT++ + +
Sbjct: 4 IINVLKPSGMTSHDVVSFIRKTFNMKKVGHTGTLDPNAAGVLPICIGKATRVAEYFNDFN 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y G LG +T T D +++ E + +E+I F+G+I Q+PPM+SA+K
Sbjct: 64 KTYRGQLTLGYSTDTQDKYGVILENSNIE-VTEEEIVNVFDKFKGDIDQIPPMYSAVKRN 122
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKA 490
G K+Y+ AR G++IE RR+ I+ DI R+ ++++ ++F V CSKGTY+R+LC D G+
Sbjct: 123 GIKLYELAREGKTIEREKRRVKIYSLDIIRNYDNKK-ILFDVECSKGTYVRTLCNDIGEQ 181
Query: 491 LGSCAHLTALRRDSIGQYSADDAWEFKEL 519
LG+ H++ L R +G +S DA+ +E+
Sbjct: 182 LGTLGHMSFLIRTKVGNFSIKDAYTLEEI 210
>gi|374708729|ref|ZP_09713163.1| tRNA pseudouridine synthase B [Sporolactobacillus inulinus CASD]
Length = 307
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 91/229 (39%), Positives = 138/229 (60%), Gaps = 6/229 (2%)
Query: 302 PTWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATK 361
P ++G ++ + KP+G TS +LR+L+K +K+GH GTLDP G+L++C+GKATK
Sbjct: 2 PEYNG----LLPLYKPRGMTSHDCVFRLRKLLKFRKIGHTGTLDPAVDGVLVLCLGKATK 57
Query: 362 LVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWE-HIKDEDIRKAAASFRGEIWQV 420
+ K Y GV RLG +T+T DA VI+ P E H+ + K + F G+I Q
Sbjct: 58 IAQYLLDYSKIYQGVIRLGSSTTTEDATGDVIETIPVEKHLDRAYVEKILSRFVGDIEQT 117
Query: 421 PPMFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLED-RQNLIFRVTCSKGTY 479
PM+SA+KV G K+Y+ AR+G ++ R ++I+ FD++ ++ F+V CSKGTY
Sbjct: 118 APMYSAVKVNGRKLYEYARKGIAVTPPVRHVTIYHFDLDSDAASFSVDIPFKVACSKGTY 177
Query: 480 IRSLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAITKNYF 528
IR+L D G+ +G AHL + R G +S+ D F+E+E I +N F
Sbjct: 178 IRTLAVDVGRGMGYPAHLHHMTRIQAGPFSSGDCVSFEEIERFIQENTF 226
>gi|423290870|ref|ZP_17269719.1| tRNA pseudouridine synthase B [Bacteroides ovatus CL02T12C04]
gi|392664735|gb|EIY58272.1| tRNA pseudouridine synthase B [Bacteroides ovatus CL02T12C04]
Length = 240
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 100/221 (45%), Positives = 133/221 (60%), Gaps = 11/221 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR----RLVKVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G ++ NKP GWTSF V G R R + VKK VGHAGTLDP+ATG++IVC GKATK
Sbjct: 6 GEVLFFNKPFGWTSFKVVGHARYHICRRIGVKKLKVGHAGTLDPLATGVMIVCTGKATKR 65
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ +Q K Y RLG T ++D + + P EHI E + + F G I QVPP
Sbjct: 66 IEEFQYHTKEYVATLRLGATTPSYDLEHEIDATYPTEHITRELVEEVLTHFIGAIEQVPP 125
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFD-IERSLEDRQNLI-FRVTCSKGTYI 480
FSA V G++ Y+ AR+GE +EL +++ I + + +E L+D + +I RV CSKGTYI
Sbjct: 126 AFSACMVDGKRAYELARKGEEVELKAKQLVIDEIELLECRLDDPEPMIQIRVVCSKGTYI 185
Query: 481 RSLCADFGKALGSCAHLTALRRDSIGQYSADDAW---EFKE 518
R+L D G+AL S AHLT L R +G +D FKE
Sbjct: 186 RALARDIGEALHSGAHLTGLIRTRVGDVRLEDCLNPEHFKE 226
>gi|392373661|ref|YP_003205494.1| tRNA pseudouridine synthase B [Candidatus Methylomirabilis oxyfera]
gi|258591354|emb|CBE67653.1| tRNA pseudouridine synthase B (tRNA pseudouridine 55 synthase)
(Psi55 synthase) (tRNA-uridine isomerase) (tRNA
pseudouridylate synthase) [Candidatus Methylomirabilis
oxyfera]
Length = 313
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 93/213 (43%), Positives = 130/213 (61%), Gaps = 2/213 (0%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
+NKP G TS V +RRL+K++++GH GTLDP ATG+L +CVG+AT++ K Y
Sbjct: 9 INKPGGMTSHDVVDVVRRLLKMRRIGHTGTLDPRATGVLPLCVGRATRIAQFLTQADKEY 68
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEK 433
+LG T T DAD V+ R + +R+ SF GEI QVPP+FSA K GE+
Sbjct: 69 LITMQLGITTDTLDADGKVLSRTDHIDVDPARLREVLESFVGEIQQVPPLFSAKKHHGER 128
Query: 434 MYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKALGS 493
+Y ARRGE++E P I I+ + D + FRV+CSKGTY R+LC D G+ LG
Sbjct: 129 LYRLARRGETVERQPVAIRIYDLTLLEC--DLPFVRFRVSCSKGTYARTLCDDVGRVLGC 186
Query: 494 CAHLTALRRDSIGQYSADDAWEFKELEEAITKN 526
AHL AL R G++ +DA ++LE+A+ ++
Sbjct: 187 GAHLYALTRVRSGRFLIEDALTLEQLEQAVVED 219
>gi|342216368|ref|ZP_08709015.1| tRNA pseudouridine synthase B [Peptoniphilus sp. oral taxon 375
str. F0436]
gi|341587258|gb|EGS30658.1| tRNA pseudouridine synthase B [Peptoniphilus sp. oral taxon 375
str. F0436]
Length = 290
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 93/212 (43%), Positives = 130/212 (61%), Gaps = 2/212 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L+NK KG+TS V R+ + +KK+GH GTLDPMA G+L + VGKATK+ D G
Sbjct: 7 ILLINKDKGFTSHDVVALCRKHLGLKKIGHTGTLDPMARGVLPILVGKATKISDYLMGQD 66
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y G + G T T DAD +++ + +DI + F G+I QVPPM+SAIK+
Sbjct: 67 KVYEGTMQFGYRTDTLDADGEILETCTNKLFDKKDILDSMKVFTGKIDQVPPMYSAIKIK 126
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKA 490
G+K+Y+ AR+G+ +E R++ I+ F++ EDR L FRV+CS GTYIRSL D K
Sbjct: 127 GKKLYEYARQGQEVERKTRQVEIYSFELLDLSEDR--LSFRVSCSSGTYIRSLVNDLAKE 184
Query: 491 LGSCAHLTALRRDSIGQYSADDAWEFKELEEA 522
L S A LT L R +G +S D +L+E
Sbjct: 185 LKSLATLTDLNRVQVGNFSLDQCHSILDLKEG 216
>gi|170754990|ref|YP_001781958.1| tRNA pseudouridine synthase B [Clostridium botulinum B1 str. Okra]
gi|429247606|ref|ZP_19210846.1| tRNA pseudouridine synthase B [Clostridium botulinum CFSAN001628]
gi|169120202|gb|ACA44038.1| tRNA pseudouridine synthase B [Clostridium botulinum B1 str. Okra]
gi|428755351|gb|EKX77982.1| tRNA pseudouridine synthase B [Clostridium botulinum CFSAN001628]
Length = 289
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 94/218 (43%), Positives = 134/218 (61%), Gaps = 3/218 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ V KPKG TSF V +R++ K+KKVGH GTLDP+A+G+L VC+GKATK+VD
Sbjct: 4 VINVLKPKGITSFDVVRDIRKIAKIKKVGHTGTLDPLASGVLPVCIGKATKIVDYIMEGT 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y +LG T T+D + V++ E + ++ KA ++G+I QVPPM+SA+K+
Sbjct: 64 KTYRVEMKLGTTTDTYDREGTVLE-EKEVSVSSTEVEKAIEKYKGDIEQVPPMYSALKIN 122
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKA 490
G+K+YD AR+G +E R+I I+ I D +IF V CSKGTYIRSLC D G
Sbjct: 123 GQKLYDLARKGIEVEREARKIHIYDICILSI--DLPYIIFDVKCSKGTYIRSLCFDIGND 180
Query: 491 LGSCAHLTALRRDSIGQYSADDAWEFKELEEAITKNYF 528
LGS A + L+R ++ +A + ++L E K Y
Sbjct: 181 LGSGAVMWNLQRLEASPFNIKEAIKLEDLNEKNIKQYI 218
>gi|403069142|ref|ZP_10910474.1| tRNA-pseudouridine 5S synthase [Oceanobacillus sp. Ndiop]
Length = 297
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 92/212 (43%), Positives = 125/212 (58%), Gaps = 1/212 (0%)
Query: 316 KPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSG 375
KPKG+TS K RR K KKVGH GTLDP G+L +C+G+ATK+V K Y
Sbjct: 9 KPKGFTSHDCVMKCRRYFKTKKVGHTGTLDPEVEGILPICIGQATKIVPFLTETSKTYIA 68
Query: 376 VFRLGEATSTWDADSPVI-QREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEKM 434
+LG T T DA VI Q+E + I ASF G+I QVPPM+SA+KV G+K+
Sbjct: 69 ELKLGSTTDTEDAHGSVIEQKELTDFPAVSVIDDVLASFTGKITQVPPMYSAVKVNGKKL 128
Query: 435 YDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKALGSC 494
Y+ AR + +E R ++I++ D +Q + ++ CSKGTYIR+LC D GK LG
Sbjct: 129 YEYARANQEVERPKREVTIYELDKLSVDPQQQTIRMKIICSKGTYIRTLCVDIGKELGYP 188
Query: 495 AHLTALRRDSIGQYSADDAWEFKELEEAITKN 526
AH++AL R G +S ++ F +EEA+ N
Sbjct: 189 AHMSALVRTKTGSFSEKNSVTFDTIEEAMENN 220
>gi|417749489|ref|ZP_12397886.1| tRNA pseudouridine 55 synthase [Mycobacterium avium subsp.
paratuberculosis S397]
gi|336459008|gb|EGO37960.1| tRNA pseudouridine 55 synthase [Mycobacterium avium subsp.
paratuberculosis S397]
Length = 293
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 91/219 (41%), Positives = 130/219 (59%), Gaps = 2/219 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G TS V G+ RR+ ++VGHAGTLDPMATG+L++ V +ATK++
Sbjct: 6 LVVVDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVLGVERATKILGLLTAAA 65
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K YS RLG+ATST DA+ V + H+ + I A RG+I QVP SAIKV
Sbjct: 66 KSYSATIRLGQATSTDDAEGDVARSVDARHLTSQAIEAAVGGLRGDIHQVPSTVSAIKVA 125
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIE--RSLEDRQNLIFRVTCSKGTYIRSLCADFG 488
G++ Y R G+++EL R + I +F++ R+ ++ V CS GTY+R+L D G
Sbjct: 126 GKRAYKLVREGQAVELPARPVRIDRFEVRGLRAAGACVDVDVEVDCSSGTYVRALARDLG 185
Query: 489 KALGSCAHLTALRRDSIGQYSADDAWEFKELEEAITKNY 527
ALG HLT LRR +G++ + A+ EL E +Y
Sbjct: 186 AALGVGGHLTPLRRTRVGRFGLEQAYGLDELAECPRLSY 224
>gi|145224608|ref|YP_001135286.1| tRNA pseudouridine synthase B [Mycobacterium gilvum PYR-GCK]
gi|145217094|gb|ABP46498.1| tRNA pseudouridine synthase B [Mycobacterium gilvum PYR-GCK]
Length = 294
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 93/222 (41%), Positives = 131/222 (59%), Gaps = 8/222 (3%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G TS V G+ RRL +KVGHAGTLDPMATG+L++ + +ATK++
Sbjct: 7 LVVVDKPGGMTSHDVVGRCRRLFGTRKVGHAGTLDPMATGVLVIGIERATKILGLLTATD 66
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y+ RLG+ TST D + ++ + + DE I +A A RG I QVP SAIK+
Sbjct: 67 KSYTATLRLGQTTSTEDTEGELLHQVSAAQVTDEQIERAIAPLRGAIEQVPSAVSAIKIA 126
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQN-----LIFRVTCSKGTYIRSLCA 485
G++ Y R GE +E+ R + I +F++ L R+N + V CS GTYIR+L
Sbjct: 127 GKRAYQMVRDGEQVEIPARPVRIDRFEV---LAVRRNGDVVDVDVVVDCSSGTYIRALAR 183
Query: 486 DFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAITKNY 527
D G ALG HLTALRR +G + D A ++L +A +Y
Sbjct: 184 DVGAALGVGGHLTALRRTRVGGFGLDQARTLEQLADAAELSY 225
>gi|424665731|ref|ZP_18102767.1| tRNA pseudouridine synthase B [Bacteroides fragilis HMW 616]
gi|404573984|gb|EKA78735.1| tRNA pseudouridine synthase B [Bacteroides fragilis HMW 616]
Length = 233
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 94/205 (45%), Positives = 127/205 (61%), Gaps = 8/205 (3%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR----RLVKVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G ++ +KP GWTSF V G R R +KVKK VGHAGTLDP+ATG++IVC GKATK
Sbjct: 6 GEVLYFDKPLGWTSFKVVGHARYHICRRIKVKKLKVGHAGTLDPLATGVMIVCTGKATKR 65
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ +Q K Y +LG T ++D + + P EHI E + + +F GEI QVPP
Sbjct: 66 IEEFQYHTKEYIATIQLGATTPSYDLEHEIDATYPTEHITRELVEETLKTFVGEIQQVPP 125
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRS 482
FSA KV G + YD AR+G+ +EL P+ + I + ++ + + RV CSKGTYIR+
Sbjct: 126 AFSACKVDGARAYDLARKGQEVELKPKLLVIDEIELLEC--NLPEIKIRVVCSKGTYIRA 183
Query: 483 LCADFGKALGSCAHLTALRRDSIGQ 507
L D G+AL S AHLT L R +G+
Sbjct: 184 LARDIGEALQSGAHLTGLIRTRVGE 208
>gi|237722116|ref|ZP_04552597.1| tRNA pseudouridine synthase B [Bacteroides sp. 2_2_4]
gi|262405677|ref|ZP_06082227.1| tRNA pseudouridine synthase B [Bacteroides sp. 2_1_22]
gi|293368621|ref|ZP_06615228.1| tRNA pseudouridine synthase B [Bacteroides ovatus SD CMC 3f]
gi|294644381|ref|ZP_06722144.1| tRNA pseudouridine synthase B [Bacteroides ovatus SD CC 2a]
gi|345510870|ref|ZP_08790430.1| tRNA pseudouridine synthase B [Bacteroides sp. D1]
gi|229442892|gb|EEO48683.1| tRNA pseudouridine synthase B [Bacteroides sp. D1]
gi|229448985|gb|EEO54776.1| tRNA pseudouridine synthase B [Bacteroides sp. 2_2_4]
gi|262356552|gb|EEZ05642.1| tRNA pseudouridine synthase B [Bacteroides sp. 2_1_22]
gi|292636263|gb|EFF54748.1| tRNA pseudouridine synthase B [Bacteroides ovatus SD CMC 3f]
gi|292640216|gb|EFF58471.1| tRNA pseudouridine synthase B [Bacteroides ovatus SD CC 2a]
Length = 240
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 100/221 (45%), Positives = 133/221 (60%), Gaps = 11/221 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR----RLVKVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G ++ NKP GWTSF V G R R + VKK VGHAGTLDP+ATG++IVC GKATK
Sbjct: 6 GEVLFFNKPLGWTSFKVVGHARYHICRRIGVKKLKVGHAGTLDPLATGVMIVCTGKATKR 65
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ +Q K Y RLG T ++D + + P EHI E + + F G I QVPP
Sbjct: 66 IEEFQYHTKEYVATLRLGATTPSYDLEHEIDATYPTEHITRELVEEVLTHFIGAIDQVPP 125
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFD-IERSLEDRQNLI-FRVTCSKGTYI 480
FSA V G++ Y+ AR+GE +EL +++ I + + +E L+D + +I RV CSKGTYI
Sbjct: 126 AFSACMVDGKRAYELARKGEEVELKAKQLVIDEIELLECRLDDPEPMIQIRVVCSKGTYI 185
Query: 481 RSLCADFGKALGSCAHLTALRRDSIGQYSADDAW---EFKE 518
R+L D G+AL S AHLT L R +G +D FKE
Sbjct: 186 RALARDIGEALHSGAHLTGLIRTRVGDVRLEDCLNPEHFKE 226
>gi|160888112|ref|ZP_02069115.1| hypothetical protein BACUNI_00520 [Bacteroides uniformis ATCC 8492]
gi|270295139|ref|ZP_06201340.1| tRNA pseudouridine synthase B [Bacteroides sp. D20]
gi|317478137|ref|ZP_07937312.1| tRNA pseudouridine synthase B [Bacteroides sp. 4_1_36]
gi|156862423|gb|EDO55854.1| tRNA pseudouridine synthase B [Bacteroides uniformis ATCC 8492]
gi|270274386|gb|EFA20247.1| tRNA pseudouridine synthase B [Bacteroides sp. D20]
gi|316905735|gb|EFV27514.1| tRNA pseudouridine synthase B [Bacteroides sp. 4_1_36]
Length = 235
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 103/228 (45%), Positives = 134/228 (58%), Gaps = 17/228 (7%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR----RLVKVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G ++ NKP GWTSF V G R R +K KK VGHAGTLDP+ATG++IVC GKATK
Sbjct: 6 GEVLYFNKPLGWTSFKVVGHARYHICRRIKEKKLKVGHAGTLDPLATGVMIVCTGKATKR 65
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ +Q K Y RLG T ++D + + P EHI + + F GEI QVPP
Sbjct: 66 IEEFQYHTKEYVATIRLGATTPSYDLEHEIDATYPTEHITRGLVEETLKKFIGEIQQVPP 125
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLI-----FRVTCSKG 477
FSA V G++ YD AR+GE +EL P+ + I + ++ L+D ++ RV CSKG
Sbjct: 126 AFSACMVNGKRAYDLARKGEEVELKPKLLVIDEIEL---LDDGLDIAEPWIKVRVVCSKG 182
Query: 478 TYIRSLCADFGKALGSCAHLTALRRDSIGQYSADDA---WEFKELEEA 522
TYIR+L D G+AL S AHLTAL R +G D +FKE EA
Sbjct: 183 TYIRALARDIGEALQSGAHLTALERTRVGDVRLADCLNPLDFKEWIEA 230
>gi|387761281|ref|YP_006068258.1| tRNA pseudouridine synthase B [Streptococcus salivarius 57.I]
gi|339292048|gb|AEJ53395.1| tRNA pseudouridine synthase B [Streptococcus salivarius 57.I]
Length = 293
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 87/216 (40%), Positives = 131/216 (60%), Gaps = 3/216 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ + K G TS KLR++++ KK+GH GTLDP TG+L + VGKAT++++
Sbjct: 5 IINLKKEAGMTSHDAVFKLRKILQEKKIGHGGTLDPDVTGVLPIAVGKATRVIEYMTEAG 64
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y G +G +T+T DA ++Q P + +E + KA ASF GEI Q+PPM+SA+KV
Sbjct: 65 KVYEGEITIGFSTTTEDASGEIVQITPVTELDEEAVDKAMASFEGEITQIPPMYSAVKVN 124
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLE---DRQNLIFRVTCSKGTYIRSLCADF 487
G+K+Y+ AR GE +E R+++I +F +E D FRV CSKGTY+R+L D
Sbjct: 125 GKKLYEYARAGEEVERPQRQVTITEFVRTSPIELENDTARFTFRVACSKGTYVRTLSVDL 184
Query: 488 GKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
G LG +H++ALRR + + D A ++ E +
Sbjct: 185 GAKLGYASHMSALRRTASAGLTLDKALTLSQISEMV 220
>gi|254821335|ref|ZP_05226336.1| tRNA pseudouridine synthase B [Mycobacterium intracellulare ATCC
13950]
Length = 301
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 95/217 (43%), Positives = 129/217 (59%), Gaps = 7/217 (3%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP TS V G+ RR+ ++VGHAGTLDPMATG+L++ V +ATK++
Sbjct: 6 IVVVDKPPAMTSHDVVGRCRRIFSTRRVGHAGTLDPMATGVLVIGVERATKILGLLSASS 65
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y+ RLG++TST DA+ + P H+ E I A RG+I QVP SAIKVG
Sbjct: 66 KSYAATIRLGQSTSTDDAEGEPVHSVPAGHLTAEAIETAVEGLRGDIAQVPSTVSAIKVG 125
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLE------DRQNLIFRVTCSKGTYIRSLC 484
G++ Y AR G ++EL R + I +FD+ R + D ++ V CS GTYIR+L
Sbjct: 126 GKRAYRLAREGHAVELEARPVRIDRFDV-RDIRPGPHGLDVLDVDVEVDCSSGTYIRALA 184
Query: 485 ADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
D G ALG HLTALRR G++ D A+ EL E
Sbjct: 185 RDLGAALGVGGHLTALRRTRAGRFGLDQAYSLDELAE 221
>gi|427384973|ref|ZP_18881478.1| tRNA pseudouridine synthase B [Bacteroides oleiciplenus YIT 12058]
gi|425728234|gb|EKU91093.1| tRNA pseudouridine synthase B [Bacteroides oleiciplenus YIT 12058]
Length = 233
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 98/219 (44%), Positives = 130/219 (59%), Gaps = 11/219 (5%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR----RLVKVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G ++ NKP WTSF V G R R + VKK VGHAGTLDP+ATG++IVC GKATK
Sbjct: 6 GEVLYFNKPLEWTSFKVVGHARYHICRRIGVKKLKVGHAGTLDPLATGVMIVCTGKATKR 65
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ +Q K Y +LG T ++D + + P EHI E + + +F GEI QVPP
Sbjct: 66 IEEFQYHTKEYVATIQLGATTPSYDLEHEIDATYPTEHITRELVEETLKTFIGEIQQVPP 125
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRS 482
FSA V G++ YD AR+GE +EL P+ + I + ++ + + RV CSKGTYIR+
Sbjct: 126 AFSACMVNGKRAYDLARKGEEVELKPKLLVIDEIELLEC--NLPEIKVRVVCSKGTYIRA 183
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDA---WEFKE 518
L D G+AL S AHLTAL R +G D +FKE
Sbjct: 184 LARDIGEALQSGAHLTALERTRVGDVRLADCLDPMDFKE 222
>gi|379748234|ref|YP_005339055.1| tRNA pseudouridine synthase B [Mycobacterium intracellulare ATCC
13950]
gi|379755522|ref|YP_005344194.1| tRNA pseudouridine synthase B [Mycobacterium intracellulare
MOTT-02]
gi|378800598|gb|AFC44734.1| tRNA pseudouridine synthase B [Mycobacterium intracellulare ATCC
13950]
gi|378805738|gb|AFC49873.1| tRNA pseudouridine synthase B [Mycobacterium intracellulare
MOTT-02]
Length = 301
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 95/217 (43%), Positives = 129/217 (59%), Gaps = 7/217 (3%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP TS V G+ RR+ ++VGHAGTLDPMATG+L++ V +ATK++
Sbjct: 6 IVVVDKPPAMTSHDVVGRCRRIFSTRRVGHAGTLDPMATGVLVIGVERATKILGLLSASS 65
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y+ RLG++TST DA+ + P H+ E I A RG+I QVP SAIKVG
Sbjct: 66 KSYAATIRLGQSTSTDDAEGEPVHSVPAGHLTAEAIETAVEGLRGDIAQVPSTVSAIKVG 125
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLE------DRQNLIFRVTCSKGTYIRSLC 484
G++ Y AR G ++EL R + I +FD+ R + D ++ V CS GTYIR+L
Sbjct: 126 GKRAYRLAREGHAVELEARPVRIDRFDV-RDIRPGPHGLDVLDVDVEVDCSSGTYIRALA 184
Query: 485 ADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
D G ALG HLTALRR G++ D A+ EL E
Sbjct: 185 RDLGAALGVGGHLTALRRTRAGRFGLDQAYSLDELAE 221
>gi|451944448|ref|YP_007465084.1| tRNA pseudouridine synthase B [Corynebacterium halotolerans YIM
70093 = DSM 44683]
gi|451903835|gb|AGF72722.1| tRNA pseudouridine synthase B [Corynebacterium halotolerans YIM
70093 = DSM 44683]
Length = 297
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 94/229 (41%), Positives = 130/229 (56%), Gaps = 12/229 (5%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G TS V +LRR + K+VGHAGTLDPMATG+L+V + + T+ +
Sbjct: 10 LVVVDKPAGMTSHDVVSRLRRFFRTKRVGHAGTLDPMATGVLVVGIERGTRFLAHLVATT 69
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y RLG AT+T DA+ E + +E +R A GEI Q P SAIK+
Sbjct: 70 KAYDATIRLGAATTTDDAEGDHTWGESAAALDEEAVRAAVGKLTGEIMQRPASVSAIKIA 129
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIE--RSLEDRQNLIFRVTCSKGTYIRSLCADFG 488
G + ++ R GE +E+ R +++F FDI R + +L V+CS GTYIRSL D G
Sbjct: 130 GRRAHELVRSGEEVEIPARPVTVFSFDIHDLRREGEFLDLDVSVSCSSGTYIRSLARDLG 189
Query: 489 KALGSCAHLTALRRDSIGQYSADDAWEFKELE----------EAITKNY 527
+ALG HLTALRR +G ++ DA E LE EA+ ++Y
Sbjct: 190 EALGIGGHLTALRRTEVGPFALPDAVELDSLENEPRLSLSLDEALIRSY 238
>gi|227488662|ref|ZP_03918978.1| tRNA pseudouridine synthase B [Corynebacterium glucuronolyticum
ATCC 51867]
gi|227091375|gb|EEI26687.1| tRNA pseudouridine synthase B [Corynebacterium glucuronolyticum
ATCC 51867]
Length = 295
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 89/214 (41%), Positives = 123/214 (57%), Gaps = 2/214 (0%)
Query: 308 FGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQ 367
G +VLV+KP+G TS +V G +RR KKVGHAGTLDPMATGLL+V V + TK +
Sbjct: 7 LGGLVLVDKPRGMTSHSVVGAIRRYFGTKKVGHAGTLDPMATGLLVVGVERGTKFLAHLV 66
Query: 368 GMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAI 427
K Y RLG+ T+T DAD + + H+ D DI + G+I Q P SAI
Sbjct: 67 AETKTYEATIRLGQETTTEDADGEITREVDASHVTDADIAREVEKLTGDIMQRPSSVSAI 126
Query: 428 KVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADF 487
K+ G++ + R GE +E+ PR ++I F++ + + +L RV CS GTYIR+L D
Sbjct: 127 KINGKRAHQLVREGEKVEIPPRPVTIHSFEV--TGREGTDLRVRVHCSSGTYIRALARDL 184
Query: 488 GKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
G LG AHL ALRR ++G + + E+
Sbjct: 185 GHGLGVGAHLIALRRLNVGPFDISRSHPLAHFED 218
>gi|296117682|ref|ZP_06836266.1| tRNA pseudouridine synthase B [Corynebacterium ammoniagenes DSM
20306]
gi|295969413|gb|EFG82654.1| tRNA pseudouridine synthase B [Corynebacterium ammoniagenes DSM
20306]
Length = 288
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 91/223 (40%), Positives = 128/223 (57%), Gaps = 6/223 (2%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G TS V ++RR +KVGHAGTLDPMATG+LI+ + + TK +
Sbjct: 6 LVVVDKPAGMTSHDVVSRVRREFGTRKVGHAGTLDPMATGVLILGIERGTKFLAHMVAAT 65
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y RLG +T+T D +S ++ HI D + + A GEI Q P SAIK+
Sbjct: 66 KAYEATIRLGASTTTDDFESDILSETSAAHITDSQVHEEIAKLSGEIMQKPAKVSAIKID 125
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKA 490
G++ Y + R GE I++ R +++ +F++ S D + L V CS GTYIRSL D G A
Sbjct: 126 GKRAYQRVRDGEDIDIPARPVTVSRFEVHNSRMDPRELDVTVECSSGTYIRSLARDLGAA 185
Query: 491 LGSCAHLTALRRDSIGQYSADDAWEFK------ELEEAITKNY 527
LG HLTALRR ++G + DDA L+EA+ + Y
Sbjct: 186 LGVGGHLTALRRTAVGPFLLDDASPIDAMQLSLSLDEALVRCY 228
>gi|298483290|ref|ZP_07001469.1| tRNA pseudouridine synthase B [Bacteroides sp. D22]
gi|336413008|ref|ZP_08593361.1| tRNA pseudouridine synthase B [Bacteroides ovatus 3_8_47FAA]
gi|423214586|ref|ZP_17201114.1| tRNA pseudouridine synthase B [Bacteroides xylanisolvens
CL03T12C04]
gi|298270607|gb|EFI12189.1| tRNA pseudouridine synthase B [Bacteroides sp. D22]
gi|335943054|gb|EGN04896.1| tRNA pseudouridine synthase B [Bacteroides ovatus 3_8_47FAA]
gi|392692492|gb|EIY85729.1| tRNA pseudouridine synthase B [Bacteroides xylanisolvens
CL03T12C04]
Length = 240
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 100/221 (45%), Positives = 133/221 (60%), Gaps = 11/221 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR----RLVKVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G ++ NKP GWTSF V G R R + VKK VGHAGTLDP+ATG++IVC GKATK
Sbjct: 6 GEVLFFNKPLGWTSFKVVGHARYHICRRIGVKKLKVGHAGTLDPLATGVMIVCTGKATKR 65
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ +Q K Y RLG T ++D + + P EHI E + + F G I QVPP
Sbjct: 66 IEEFQYHTKEYVATLRLGATTPSYDLEHEIDATYPTEHITRELVEEVLTRFIGAIDQVPP 125
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFD-IERSLEDRQNLI-FRVTCSKGTYI 480
FSA V G++ Y+ AR+GE +EL +++ I + + +E L+D + +I RV CSKGTYI
Sbjct: 126 AFSACMVDGKRAYELARKGEEVELKAKQLVIDEIELLECRLDDPEPMIQIRVVCSKGTYI 185
Query: 481 RSLCADFGKALGSCAHLTALRRDSIGQYSADDAW---EFKE 518
R+L D G+AL S AHLT L R +G +D FKE
Sbjct: 186 RALARDIGEALHSGAHLTGLIRTRVGDVRLEDCLNPEHFKE 226
>gi|374296758|ref|YP_005046949.1| tRNA pseudouridine synthase B [Clostridium clariflavum DSM 19732]
gi|359826252|gb|AEV69025.1| tRNA pseudouridine synthase B [Clostridium clariflavum DSM 19732]
Length = 295
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 94/208 (45%), Positives = 132/208 (63%), Gaps = 3/208 (1%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
+ KP G TSF V LRRL+K KK+GH GTLDP A G+L VC+GKATK ++ K Y
Sbjct: 7 ILKPPGMTSFDVVAYLRRLLKEKKIGHTGTLDPGAVGVLPVCIGKATKTIEYLTDKDKEY 66
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEK 433
LG +T T D+ V+++ +I+ E+I KA SF GE Q+PPM+SA+KV G+K
Sbjct: 67 RAELTLGISTDTQDSYGNVLKKCDV-NIEKEEIYKAIMSFVGEYNQIPPMYSAVKVEGKK 125
Query: 434 MYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKALGS 493
+Y+ AR G +IE +PR+++I DI ++R +IF V CSKGTYIR+LC+D G+ LG
Sbjct: 126 LYELARDGITIERAPRKVAIHSIDIVNIKDNR--VIFDVVCSKGTYIRTLCSDIGEKLGC 183
Query: 494 CAHLTALRRDSIGQYSADDAWEFKELEE 521
H++ L R G + D+ +E+ E
Sbjct: 184 GGHMSFLVRTRSGSFKLSDSLTLEEIYE 211
>gi|228477398|ref|ZP_04062034.1| tRNA pseudouridine synthase B [Streptococcus salivarius SK126]
gi|228250833|gb|EEK10021.1| tRNA pseudouridine synthase B [Streptococcus salivarius SK126]
Length = 293
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 87/216 (40%), Positives = 131/216 (60%), Gaps = 3/216 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ + K G TS KLR++++ KK+GH GTLDP TG+L + VGKAT++++
Sbjct: 5 IINLKKEAGMTSHDAVFKLRKILQEKKIGHGGTLDPDVTGVLPIAVGKATRVIEYMTEAG 64
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y G +G +T+T DA ++Q P + +E + KA ASF GEI Q+PPM+SA+KV
Sbjct: 65 KVYEGEITIGFSTTTEDASGEIVQITPVTELDEEAVDKAMASFEGEITQIPPMYSAVKVN 124
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLE---DRQNLIFRVTCSKGTYIRSLCADF 487
G+K+Y+ AR GE +E R+++I +F +E D FRV CSKGTY+R+L D
Sbjct: 125 GKKLYEYARAGEEVERPQRQVTITEFVRTSPIELENDTARFTFRVACSKGTYVRTLSVDL 184
Query: 488 GKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
G LG +H++ALRR + + D A ++ E +
Sbjct: 185 GAKLGYASHMSALRRTASAGLTLDKALTLSQISEMV 220
>gi|423304442|ref|ZP_17282441.1| tRNA pseudouridine synthase B [Bacteroides uniformis CL03T00C23]
gi|423310444|ref|ZP_17288428.1| tRNA pseudouridine synthase B [Bacteroides uniformis CL03T12C37]
gi|392681615|gb|EIY74972.1| tRNA pseudouridine synthase B [Bacteroides uniformis CL03T12C37]
gi|392684771|gb|EIY78094.1| tRNA pseudouridine synthase B [Bacteroides uniformis CL03T00C23]
Length = 252
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 103/228 (45%), Positives = 134/228 (58%), Gaps = 17/228 (7%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR----RLVKVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G ++ NKP GWTSF V G R R +K KK VGHAGTLDP+ATG++IVC GKATK
Sbjct: 23 GEVLYFNKPLGWTSFKVVGHARYHICRRIKEKKLKVGHAGTLDPLATGVMIVCTGKATKR 82
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ +Q K Y RLG T ++D + + P EHI + + F GEI QVPP
Sbjct: 83 IEEFQYHTKEYVATIRLGATTPSYDLEHEIDATYPTEHITRGLVEETLKKFIGEIQQVPP 142
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLI-----FRVTCSKG 477
FSA V G++ YD AR+GE +EL P+ + I + ++ L+D ++ RV CSKG
Sbjct: 143 AFSACMVNGKRAYDLARKGEEVELKPKLLVIDEIEL---LDDGLDIAEPWIKVRVVCSKG 199
Query: 478 TYIRSLCADFGKALGSCAHLTALRRDSIGQYSADDA---WEFKELEEA 522
TYIR+L D G+AL S AHLTAL R +G D +FKE EA
Sbjct: 200 TYIRALARDIGEALQSGAHLTALERTRVGDVRLADCLNPLDFKEWIEA 247
>gi|333368626|ref|ZP_08460799.1| tRNA pseudouridine synthase B [Psychrobacter sp. 1501(2011)]
gi|332976697|gb|EGK13535.1| tRNA pseudouridine synthase B [Psychrobacter sp. 1501(2011)]
Length = 344
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 91/215 (42%), Positives = 127/215 (59%), Gaps = 6/215 (2%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKV-----KKVGHAGTLDPMATGLLIVCVGKATKLVDR 365
++L++KPKG TS V K++ L+K KK GH GTLDPMATGLL VC+G+ATK
Sbjct: 27 VILIDKPKGLTSQQVVSKVKYLLKSPVHDSKKAGHTGTLDPMATGLLPVCLGEATKFSHY 86
Query: 366 YQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFS 425
K Y + +LG T T DA+ ++ +P ++ ++ + A F G+I QVPPM+S
Sbjct: 87 QLDADKSYQAMIKLGIQTDTGDAEGKIVAEKPVPNLSLSELEQVTAKFLGDILQVPPMYS 146
Query: 426 AIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCA 485
A+K G+K+Y+ AR G IE R I+I + + E L+ VTCSKGTY+R L
Sbjct: 147 ALKKDGKKLYEYAREGIEIERPARPITIKNLSLALT-EAADELLLTVTCSKGTYVRVLAE 205
Query: 486 DFGKALGSCAHLTALRRDSIGQYSADDAWEFKELE 520
D +ALG+ HLT LRR +G + D A +LE
Sbjct: 206 DIAQALGTLGHLTVLRRIQVGHFDIDQALTLDQLE 240
>gi|452990671|emb|CCQ98080.1| tRNA pseudouridine synthase B [Clostridium ultunense Esp]
Length = 313
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 94/214 (43%), Positives = 139/214 (64%), Gaps = 2/214 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++V KP+G TS V K+RR + +K++GHAGTLDP ATG+L +C+G+ATK+V+ Q
Sbjct: 5 ILVVAKPRGLTSHDVIQKVRRFLGIKRIGHAGTLDPEATGVLPLCIGRATKIVEYIQDRS 64
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y + G AT T D V++R H+ E++ A SF G Q PPM+SA+KV
Sbjct: 65 KTYVAEWTGGIATDTEDQSGNVVERINGLHLTWEEVTSAFTSFIGPYAQTPPMYSAVKVK 124
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDI-ERSLE-DRQNLIFRVTCSKGTYIRSLCADFG 488
G+++Y+ AR+G+ +E +PR ++I+ I + +LE D + F+V CSKGTYIR+LC D G
Sbjct: 125 GKRLYELARQGKEVERTPRLVTIYDLMILDGNLEQDPPKVRFQVRCSKGTYIRTLCVDIG 184
Query: 489 KALGSCAHLTALRRDSIGQYSADDAWEFKELEEA 522
K LG AH++ L R G Y ++A +E+EEA
Sbjct: 185 KKLGIPAHMSDLIRVESGGYHLEEAHSLEEIEEA 218
>gi|160884924|ref|ZP_02065927.1| hypothetical protein BACOVA_02914 [Bacteroides ovatus ATCC 8483]
gi|299145176|ref|ZP_07038244.1| tRNA pseudouridine synthase B [Bacteroides sp. 3_1_23]
gi|336403516|ref|ZP_08584231.1| tRNA pseudouridine synthase B [Bacteroides sp. 1_1_30]
gi|423293848|ref|ZP_17271975.1| tRNA pseudouridine synthase B [Bacteroides ovatus CL03T12C18]
gi|156109959|gb|EDO11704.1| tRNA pseudouridine synthase B [Bacteroides ovatus ATCC 8483]
gi|295085895|emb|CBK67418.1| tRNA pseudouridine synthase B [Bacteroides xylanisolvens XB1A]
gi|298515667|gb|EFI39548.1| tRNA pseudouridine synthase B [Bacteroides sp. 3_1_23]
gi|335945846|gb|EGN07653.1| tRNA pseudouridine synthase B [Bacteroides sp. 1_1_30]
gi|392677806|gb|EIY71222.1| tRNA pseudouridine synthase B [Bacteroides ovatus CL03T12C18]
Length = 240
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 100/221 (45%), Positives = 133/221 (60%), Gaps = 11/221 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR----RLVKVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G ++ NKP GWTSF V G R R + VKK VGHAGTLDP+ATG++IVC GKATK
Sbjct: 6 GEVLFFNKPFGWTSFKVVGHARYHICRRIGVKKLKVGHAGTLDPLATGVMIVCTGKATKR 65
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ +Q K Y RLG T ++D + + P EHI E + + F G I QVPP
Sbjct: 66 IEEFQYHTKEYVATLRLGATTPSYDLEHEIDATYPTEHITRELVEEVLTHFIGAIDQVPP 125
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFD-IERSLEDRQNLI-FRVTCSKGTYI 480
FSA V G++ Y+ AR+GE +EL +++ I + + +E L+D + +I RV CSKGTYI
Sbjct: 126 AFSACMVDGKRAYELARKGEEVELKAKQLVIDEIELLECRLDDPEPMIQIRVVCSKGTYI 185
Query: 481 RSLCADFGKALGSCAHLTALRRDSIGQYSADDAW---EFKE 518
R+L D G+AL S AHLT L R +G +D FKE
Sbjct: 186 RALARDIGEALHSGAHLTGLIRTRVGDVRLEDCLNPEHFKE 226
>gi|94969230|ref|YP_591278.1| tRNA pseudouridine synthase B [Candidatus Koribacter versatilis
Ellin345]
gi|94551280|gb|ABF41204.1| tRNA pseudouridine synthase B [Candidatus Koribacter versatilis
Ellin345]
Length = 302
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 90/221 (40%), Positives = 130/221 (58%), Gaps = 3/221 (1%)
Query: 307 PFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRY 366
P +++++KP GWTS V +LRR++ + GH GTLDPMATG+L V +G+ T+L Y
Sbjct: 2 PLDAVLVIDKPAGWTSHDVVARLRRVLSERSAGHLGTLDPMATGVLPVVLGRYTRLSQFY 61
Query: 367 QGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSA 426
K Y G R G AT+T+DA+ + + E +R+A+ F G + Q+PP FSA
Sbjct: 62 NHSEKSYEGEIRFGFATNTYDAEGETVGEAQTVQVALEGVREASREFVGPLSQLPPPFSA 121
Query: 427 IKVGGEKMYDKARRGESIELSPRRISIFQFDI-ERSLEDRQNLIFRVTCSKGTYIRSLCA 485
K+ G Y AR+ +EL P I +FQF++ E S DR + FR S GTYIRSL
Sbjct: 122 KKINGVPAYKLARKNVEVELKPSAIEVFQFEVFEGSAPDR--IGFRAHVSSGTYIRSLAH 179
Query: 486 DFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAITKN 526
D G+ LG AHL +LRR ++ +++ D A + +E A+ K
Sbjct: 180 DLGQKLGCGAHLASLRRTTVAEFTIDQAHTLEAVETAVAKG 220
>gi|182414632|ref|YP_001819698.1| tRNA pseudouridine synthase B [Opitutus terrae PB90-1]
gi|259550528|sp|B1ZX46.1|TRUB_OPITP RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|177841846|gb|ACB76098.1| tRNA pseudouridine synthase B [Opitutus terrae PB90-1]
Length = 241
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 88/210 (41%), Positives = 127/210 (60%), Gaps = 2/210 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++LV+KP TS V +LRR + +K++GHAGTLDPMATGL+I+ +GKAT + +
Sbjct: 11 VLLVDKPTAHTSHDVVARLRRKLNMKRIGHAGTLDPMATGLMILLIGKATTISQYLTSLD 70
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y G LG+ T + DAD V+ P + +IR A A F G+ +Q PPM+SAIKV
Sbjct: 71 KEYEGTIELGKVTDSQDADGEVLSTLPVPPFTEAEIRAAMAGFMGDQYQTPPMYSAIKVD 130
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKA 490
G +Y AR+G +E PR I + F++ R + + FR+ C+KGTY+R++ D G+
Sbjct: 131 GVPLYKTARKGGEVEREPRFIRVSSFELTRFALPQFD--FRLRCTKGTYVRTIAHDLGQR 188
Query: 491 LGSCAHLTALRRDSIGQYSADDAWEFKELE 520
LG AHL ALRR + ++ DA +E
Sbjct: 189 LGCGAHLAALRRTATDKFKLADALTLDAIE 218
>gi|442804549|ref|YP_007372698.1| tRNA pseudouridine synthase B [Clostridium stercorarium subsp.
stercorarium DSM 8532]
gi|442740399|gb|AGC68088.1| tRNA pseudouridine synthase B [Clostridium stercorarium subsp.
stercorarium DSM 8532]
Length = 303
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 96/222 (43%), Positives = 138/222 (62%), Gaps = 11/222 (4%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++LV KP G TSF V LR+++KVKK+GHAGTLDP A GLL VC+GKATK ++R+
Sbjct: 4 ILLVIKPPGMTSFDVVAYLRKILKVKKIGHAGTLDPSAGGLLPVCLGKATKAIERFLNFD 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y LG T T DA+ V++++ + D I +A SF+G+ Q+PPM+SAIKV
Sbjct: 64 KSYRAEMVLGVVTDTQDAEGRVLEKKDVT-LDDTAIIEAVNSFKGKYGQIPPMYSAIKVN 122
Query: 431 GEKMYDKARRGESIELSPRRISIFQ---FDIERSLEDRQNLI---FRVTCSKGTYIRSLC 484
G K+YD AR+G I+ PR++ I + DI+R R ++ F V CSKGTY+R+LC
Sbjct: 123 GRKLYDLARQGIEIQREPRQVEISEIKVIDIKR----RDGVVAVRFDVDCSKGTYVRTLC 178
Query: 485 ADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAITKN 526
D G+ LG AH++ L R +G + + +E+ + + K
Sbjct: 179 HDIGQRLGCGAHMSFLIRTRVGPFPLTEGITLEEINDRLEKG 220
>gi|410095978|ref|ZP_11290969.1| tRNA pseudouridine synthase B [Parabacteroides goldsteinii
CL02T12C30]
gi|409227384|gb|EKN20282.1| tRNA pseudouridine synthase B [Parabacteroides goldsteinii
CL02T12C30]
Length = 235
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 102/229 (44%), Positives = 136/229 (59%), Gaps = 18/229 (7%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR----RLVKVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G ++ NKP WTSF + K R R +KVKK VGHAGTLDP+ATG++IVC G+ATK
Sbjct: 6 GEVLYFNKPLTWTSFDLVNKFRYKLSRKLKVKKIKVGHAGTLDPLATGVMIVCTGRATKR 65
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
+D +Q K Y +LGE T ++D + V P EHI E + + SF G I Q+PP
Sbjct: 66 IDEFQYQTKEYVATLKLGETTPSFDLEKEVDAVYPTEHITREKVEEVLNSFVGTIQQIPP 125
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLI-FRVTCSKGTYIR 481
+FSA KV G++ Y+ AR+GE +EL + + I + ++ LE +I RV CSKGTYIR
Sbjct: 126 VFSACKVDGKRAYELARKGEEVELKSKTLVIDEMEL---LECNLPVIKIRVVCSKGTYIR 182
Query: 482 SLCADFGKALGSCAHLTALRRDSIGQYSAD--------DAWEFKELEEA 522
+L D G AL S AHL L R IG + D DA+ + +EEA
Sbjct: 183 ALARDIGVALNSGAHLIGLERTRIGDITLDKCMNPEDIDAFLDEAVEEA 231
>gi|333029503|ref|ZP_08457564.1| tRNA pseudouridine synthase B [Bacteroides coprosuis DSM 18011]
gi|332740100|gb|EGJ70582.1| tRNA pseudouridine synthase B [Bacteroides coprosuis DSM 18011]
Length = 232
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 94/213 (44%), Positives = 129/213 (60%), Gaps = 8/213 (3%)
Query: 309 GTMVLVNKPKGWTSFTVC----GKLRRLVKVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G ++ NKP WTSF + G LR+ + VKK VGHAGTLDP+ATG++I+C GKATK
Sbjct: 6 GEVLYFNKPLEWTSFNLVAKVRGALRKKLNVKKIKVGHAGTLDPLATGVMIICTGKATKR 65
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ +Q K Y +LG T ++D + + P H+ E + K SF GEI Q+PP
Sbjct: 66 IEEFQYQTKEYIANIKLGATTPSYDLEHEIDATYPTSHLTKELVEKTLKSFIGEIQQIPP 125
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRS 482
FSA K+ G++ YD AR+GE + L P+ + I DIE + ++ RV CSKGTYIR+
Sbjct: 126 SFSACKIEGKRAYDLARKGEEVNLKPKLLVI--DDIELLDCNLPDISIRVVCSKGTYIRA 183
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDAWE 515
L D G+AL S AHLT L R +G + DD +
Sbjct: 184 LARDIGEALNSGAHLTGLIRIRVGNITLDDCMD 216
>gi|423281334|ref|ZP_17260245.1| tRNA pseudouridine synthase B [Bacteroides fragilis HMW 610]
gi|404583038|gb|EKA87721.1| tRNA pseudouridine synthase B [Bacteroides fragilis HMW 610]
Length = 233
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 94/205 (45%), Positives = 127/205 (61%), Gaps = 8/205 (3%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR----RLVKVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G ++ +KP GWTSF V G R R +KVKK VGHAGTLDP+ATG++IVC GKATK
Sbjct: 6 GEVLYFDKPLGWTSFKVVGHARYHICRRMKVKKLKVGHAGTLDPLATGVMIVCTGKATKR 65
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ +Q K Y +LG T ++D + + P EHI E + + +F GEI QVPP
Sbjct: 66 IEEFQYHTKEYIATIQLGATTPSYDLEHEIDATYPTEHITRELVEETLKTFVGEIQQVPP 125
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRS 482
FSA KV G + YD AR+G+ +EL P+ + I + ++ + + RV CSKGTYIR+
Sbjct: 126 AFSACKVDGARAYDLARKGQEVELKPKLLVIDEIELLEC--NLPEIKIRVVCSKGTYIRA 183
Query: 483 LCADFGKALGSCAHLTALRRDSIGQ 507
L D G+AL S AHLT L R +G+
Sbjct: 184 LARDIGEALQSGAHLTGLIRTRVGE 208
>gi|423220641|ref|ZP_17207136.1| tRNA pseudouridine synthase B [Bacteroides caccae CL03T12C61]
gi|392623718|gb|EIY17821.1| tRNA pseudouridine synthase B [Bacteroides caccae CL03T12C61]
Length = 240
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 99/221 (44%), Positives = 133/221 (60%), Gaps = 11/221 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR----RLVKVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G ++ NKP GWTSF V G +R R + VKK VGHAGTLDP+ATG++IVC GKATK
Sbjct: 6 GEVLFFNKPLGWTSFKVVGHVRYHICRQIGVKKLKVGHAGTLDPLATGVMIVCTGKATKR 65
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ +Q K Y RLG T ++D + + P HI E + K F G I QVPP
Sbjct: 66 IEEFQYHTKEYVATLRLGATTPSYDLEHEIDATYPTGHITRELVEKVLTHFIGTIEQVPP 125
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFD-IERSLEDRQNLI-FRVTCSKGTYI 480
FSA V G++ Y+ AR+GE +EL +++ I + + +E LE+ + +I RV CSKGTYI
Sbjct: 126 AFSACMVDGKRAYELARKGEEVELKAKQLVIDEIELLECRLEEPEPMIRIRVVCSKGTYI 185
Query: 481 RSLCADFGKALGSCAHLTALRRDSIGQYSADDAWE---FKE 518
R+L D G+AL S AHL L R +G +D + FKE
Sbjct: 186 RALARDIGEALHSGAHLIGLIRTRVGDVRLEDCLDPALFKE 226
>gi|440780950|ref|ZP_20959421.1| tRNA pseudouridine synthase B [Clostridium pasteurianum DSM 525]
gi|440221538|gb|ELP60743.1| tRNA pseudouridine synthase B [Clostridium pasteurianum DSM 525]
Length = 289
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 94/215 (43%), Positives = 131/215 (60%), Gaps = 3/215 (1%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
V K TSF V +R+L K+KKVGH GTLDP+ATG+L +C+GKATKLVD K Y
Sbjct: 7 VYKKADMTSFDVVRIVRKLSKIKKVGHTGTLDPLATGVLPICIGKATKLVDYIMDDFKVY 66
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEK 433
+LG + T+D + +I+ +I ++DI SF+G I Q+PPM+SA+KV G++
Sbjct: 67 DAALKLGVTSDTYDKEGSIIENN-CVNIAEKDIINTVKSFQGTIEQIPPMYSALKVNGKR 125
Query: 434 MYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKALGS 493
+YD AR+G IE R+I+I FDI + + FR+ CSKGTYIRSLC D G LG
Sbjct: 126 LYDLARKGIEIERKSRQITI--FDIVITNISIPYVYFRIKCSKGTYIRSLCNDIGLKLGC 183
Query: 494 CAHLTALRRDSIGQYSADDAWEFKELEEAITKNYF 528
A + +L R + G ++ D++ L E K+Y
Sbjct: 184 GALMWSLERTATGIFTKDNSVNIDRLTEENIKDYL 218
>gi|328953962|ref|YP_004371296.1| tRNA pseudouridine synthase B [Desulfobacca acetoxidans DSM 11109]
gi|328454286|gb|AEB10115.1| tRNA pseudouridine synthase B [Desulfobacca acetoxidans DSM 11109]
Length = 304
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 91/203 (44%), Positives = 126/203 (62%), Gaps = 3/203 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++++KP G +SF V +RRL+KVKK+GH GTLDP A G+L +C+ +ATKLV
Sbjct: 8 IIVIDKPAGPSSFGVVKAVRRLLKVKKIGHLGTLDPFAVGVLPLCLNEATKLVPFLIDAP 67
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y LG T+T D+ VI P + E++ + AA+F GE WQ PP+FSA+
Sbjct: 68 KTYRATIVLGTETNTQDSTGEVIAHCP-QLPAPEEVYRVAATFIGEQWQTPPLFSALHYQ 126
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKA 490
G+++Y AR+G I++ RRISI +E + LI VTCSKGTYIR+L AD G
Sbjct: 127 GQRLYQLARQGTLIDIPARRISILDLSVESV--NLPELIMTVTCSKGTYIRTLAADIGSR 184
Query: 491 LGSCAHLTALRRDSIGQYSADDA 513
LG AHL AL+R +G ++ D A
Sbjct: 185 LGCGAHLKALQRQRVGPFTLDQA 207
>gi|418017802|ref|ZP_12657358.1| tRNA pseudouridine synthase B [Streptococcus salivarius M18]
gi|345526651|gb|EGX29962.1| tRNA pseudouridine synthase B [Streptococcus salivarius M18]
Length = 293
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 87/216 (40%), Positives = 131/216 (60%), Gaps = 3/216 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ + K G TS KLR++++ KK+GH GTLDP TG+L + VGKAT++++
Sbjct: 5 IINLKKEAGMTSHDAVFKLRKILQEKKIGHGGTLDPDVTGVLPIAVGKATRVIEYMTEAG 64
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y G +G +T+T DA ++Q P + +E + KA ASF GEI Q+PPM+SA+KV
Sbjct: 65 KVYEGEITIGFSTTTEDAGGEIVQTTPVTELDEETVDKAMASFEGEITQIPPMYSAVKVN 124
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLE---DRQNLIFRVTCSKGTYIRSLCADF 487
G+K+Y+ AR GE +E R+++I +F +E D FRV CSKGTY+R+L D
Sbjct: 125 GKKLYEYARAGEEVERPQRQVTITEFVRTSPIELENDTARFSFRVACSKGTYVRTLSVDL 184
Query: 488 GKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
G LG +H++ALRR + + D A ++ E +
Sbjct: 185 GAKLGYASHMSALRRTASAGLTLDKALTLSQISEMV 220
>gi|282858551|ref|ZP_06267722.1| tRNA pseudouridine synthase B [Prevotella bivia JCVIHMP010]
gi|424899429|ref|ZP_18322971.1| tRNA pseudouridine 55 synthase [Prevotella bivia DSM 20514]
gi|282588676|gb|EFB93810.1| tRNA pseudouridine synthase B [Prevotella bivia JCVIHMP010]
gi|388591629|gb|EIM31868.1| tRNA pseudouridine 55 synthase [Prevotella bivia DSM 20514]
Length = 235
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 86/217 (39%), Positives = 128/217 (58%), Gaps = 5/217 (2%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVK-----KVGHAGTLDPMATGLLIVCVGKATKLV 363
G ++ ++KP G TSF +R L K+GHAGTLDP+ATG+LI+ GK TKL+
Sbjct: 6 GVIIPIDKPYGITSFKALAHVRYLCTQANGGKVKIGHAGTLDPLATGVLILATGKKTKLI 65
Query: 364 DRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPM 423
+ Q K Y +LG T ++D + + P EHI + I+ +F GEI QVPP
Sbjct: 66 ETLQAHTKEYVATLQLGATTPSYDMEHEENETFPIEHITGDLIKNTLQTFVGEIQQVPPT 125
Query: 424 FSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSL 483
+SA+KV G++ Y R G+ ++L P+ + I + ++ +D+ + RV C KGTYIR+L
Sbjct: 126 YSAVKVDGQRAYSLRRDGQDVQLKPKTVQIDEIELITFDQDKMQITIRVVCGKGTYIRAL 185
Query: 484 CADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELE 520
DFG+A+ S A+LTALRR +G+ DD + + E
Sbjct: 186 ARDFGRAINSGAYLTALRRTRVGEIKVDDCVNYDKFE 222
>gi|260909534|ref|ZP_05916237.1| tRNA pseudouridine synthase B [Prevotella sp. oral taxon 472 str.
F0295]
gi|260636382|gb|EEX54369.1| tRNA pseudouridine synthase B [Prevotella sp. oral taxon 472 str.
F0295]
Length = 240
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 88/219 (40%), Positives = 127/219 (57%), Gaps = 6/219 (2%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRL------VKVKKVGHAGTLDPMATGLLIVCVGKATKL 362
G ++ ++KP TSF ++R L VK K+GHAGTLDP+ATG+L++C GKATK
Sbjct: 6 GEIICIDKPYEITSFGALARVRHLLSRRLGVKRVKIGHAGTLDPLATGVLVLCTGKATKR 65
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
+ Q K Y +LG T ++D + PV + HI E I F GEI QVPP
Sbjct: 66 IAELQAHTKEYVATLQLGATTPSYDMEHPVNETFETAHITREAIDNVLQQFVGEIQQVPP 125
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRS 482
+SA+KV G++ YD R+G+ +EL+P+ + I + ++ + L RV C KGTYIR+
Sbjct: 126 TYSAVKVNGDRAYDLRRKGKDVELAPKTLQIDEIEVLNFDPSQMQLTIRVVCGKGTYIRA 185
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
L D G+AL S A+LTALRR +G ++ + +E
Sbjct: 186 LARDIGRALNSGAYLTALRRTRVGDVRVENCLQLDTFKE 224
>gi|443306688|ref|ZP_21036476.1| tRNA pseudouridine synthase B [Mycobacterium sp. H4Y]
gi|442768252|gb|ELR86246.1| tRNA pseudouridine synthase B [Mycobacterium sp. H4Y]
Length = 296
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 95/217 (43%), Positives = 130/217 (59%), Gaps = 7/217 (3%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP TS V G+ RR+ ++VGHAGTLDPMATG+L++ V +ATK++
Sbjct: 6 IVVVDKPPAMTSHDVVGRCRRIFSTRRVGHAGTLDPMATGVLVIGVERATKILGLLSASS 65
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y+ RLG++TST DA+ ++ P H+ E I A RG+I QVP SAIKVG
Sbjct: 66 KSYAATIRLGQSTSTDDAEGEPVRSVPAGHLTAEAIGTAVEGLRGDIAQVPSTVSAIKVG 125
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLE------DRQNLIFRVTCSKGTYIRSLC 484
G++ Y AR G ++EL R + I +FD+ R + D ++ V CS GTYIR+L
Sbjct: 126 GKRAYRLAREGHAVELEARPVRIDRFDV-RDIRPGPHGVDVLDVDVEVDCSSGTYIRALA 184
Query: 485 ADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
D G ALG HLTALRR G++ D A+ EL E
Sbjct: 185 RDLGAALGVGGHLTALRRTRAGRFGLDQAYSLDELAE 221
>gi|406031758|ref|YP_006730650.1| Sfp-type phosphopantetheinyl transferase [Mycobacterium indicus
pranii MTCC 9506]
gi|405130305|gb|AFS15560.1| Sfp-type phosphopantetheinyl transferase [Mycobacterium indicus
pranii MTCC 9506]
Length = 301
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 95/217 (43%), Positives = 130/217 (59%), Gaps = 7/217 (3%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP TS V G+ RR+ ++VGHAGTLDPMATG+L++ V +ATK++
Sbjct: 6 IVVVDKPPAMTSHDVVGRCRRIFSTRRVGHAGTLDPMATGVLVIGVERATKILGLLSASS 65
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y+ RLG++TST DA+ ++ P H+ E I A RG+I QVP SAIKVG
Sbjct: 66 KSYAATIRLGQSTSTDDAEGEPVRSVPAGHLTAEAIGTAVEGLRGDIAQVPSTVSAIKVG 125
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLE------DRQNLIFRVTCSKGTYIRSLC 484
G++ Y AR G ++EL R + I +FD+ R + D ++ V CS GTYIR+L
Sbjct: 126 GKRAYRLAREGHAVELEARPVRIDRFDV-RDIRPGPHGVDVLDVDVEVDCSSGTYIRALA 184
Query: 485 ADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
D G ALG HLTALRR G++ D A+ EL E
Sbjct: 185 RDLGAALGVGGHLTALRRTRAGRFGLDQAYSLDELAE 221
>gi|379763067|ref|YP_005349464.1| tRNA pseudouridine synthase B [Mycobacterium intracellulare
MOTT-64]
gi|378811009|gb|AFC55143.1| tRNA pseudouridine synthase B [Mycobacterium intracellulare
MOTT-64]
Length = 301
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 95/217 (43%), Positives = 130/217 (59%), Gaps = 7/217 (3%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP TS V G+ RR+ ++VGHAGTLDPMATG+L++ V +ATK++
Sbjct: 6 IVVVDKPPAMTSHDVVGRCRRIFSTRRVGHAGTLDPMATGVLVIGVERATKILGLLSASS 65
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y+ RLG++TST DA+ ++ P H+ E I A RG+I QVP SAIKVG
Sbjct: 66 KSYAATIRLGQSTSTDDAEGEPVRSVPAGHLTAEAIGTAVEGLRGDIAQVPSTVSAIKVG 125
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLE------DRQNLIFRVTCSKGTYIRSLC 484
G++ Y AR G ++EL R + I +FD+ R + D ++ V CS GTYIR+L
Sbjct: 126 GKRAYRLAREGHAVELEARPVRIDRFDV-RDIRPGPHGVDVLDVDVEVDCSSGTYIRALA 184
Query: 485 ADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
D G ALG HLTALRR G++ D A+ EL E
Sbjct: 185 RDLGAALGVGGHLTALRRTRAGRFGLDQAYSLDELAE 221
>gi|365121627|ref|ZP_09338543.1| tRNA pseudouridine synthase B [Tannerella sp. 6_1_58FAA_CT1]
gi|363645117|gb|EHL84391.1| tRNA pseudouridine synthase B [Tannerella sp. 6_1_58FAA_CT1]
Length = 239
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 92/224 (41%), Positives = 137/224 (61%), Gaps = 10/224 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR----RLVKVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G ++ +KP WTSF + +R R +K+KK VGHAGTLDP+A+G++I+C GKATKL
Sbjct: 6 GEVLYFDKPLYWTSFKLVKIVRTRISRKLKIKKIKVGHAGTLDPLASGVMIICTGKATKL 65
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ +Q K Y +LG T ++D ++ + P EHI E + F G I QVPP
Sbjct: 66 IESFQYQTKEYVATLQLGATTPSFDRETEIDGVYPTEHITREGVETVLGQFVGSIQQVPP 125
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLI-FRVTCSKGTYIR 481
++SA K+ G + YD AR+GE +EL + + I + ++ LE + ++I RV CSKGTYIR
Sbjct: 126 VYSACKIDGRRAYDFARKGEDVELKAKELVIDEIEL---LEYQSDIIKIRVVCSKGTYIR 182
Query: 482 SLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAITK 525
+L D G+ALGS AHL L R +G +D + +++E + K
Sbjct: 183 ALARDIGQALGSGAHLIGLVRTRVGDVRLEDCLQVDQIDELVEK 226
>gi|375091592|ref|ZP_09737881.1| tRNA pseudouridine synthase B [Helcococcus kunzii ATCC 51366]
gi|374563114|gb|EHR34436.1| tRNA pseudouridine synthase B [Helcococcus kunzii ATCC 51366]
Length = 297
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 84/211 (39%), Positives = 133/211 (63%), Gaps = 2/211 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++VNK + TS V LRR + +K++GH GTLDPMATG+L +C+G +T++
Sbjct: 5 ILVVNKSESLTSHDVVSILRRKLNIKRIGHTGTLDPMATGVLPICIGNSTRISSYIMEQG 64
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y + G +T+T+D+ V+ + ++ I A ASF+GEI Q PP +SAIKV
Sbjct: 65 KSYIAELKFGTSTTTYDSTGDVVDKSDNTLFSEKQINDALASFKGEIEQYPPKYSAIKVD 124
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKA 490
G+K+Y+ AR+G+ +E+ PR+I I+ + S++D + + + CSKGTYIRSL D G
Sbjct: 125 GKKLYEYARQGQDVEIKPRKIKIYDIKL-ISIKD-ETCVIEIDCSKGTYIRSLIHDLGLK 182
Query: 491 LGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
L S AH+T L R+ +G++ DA + +++E
Sbjct: 183 LNSFAHMTDLVRNRVGKFYLKDALDISKIDE 213
>gi|389798951|ref|ZP_10201959.1| tRNA pseudouridine synthase B [Rhodanobacter sp. 116-2]
gi|388444306|gb|EIM00426.1| tRNA pseudouridine synthase B [Rhodanobacter sp. 116-2]
Length = 308
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 89/212 (41%), Positives = 125/212 (58%), Gaps = 2/212 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+VL++KP+G +S +RRL++ K GH G LDP+ATGLL +C G+ATKL G
Sbjct: 15 IVLLDKPRGLSSNQALQAVRRLLRASKGGHTGALDPLATGLLPLCFGEATKLAGSLLGAR 74
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y RLG T T D++ V+++ P + I A RG I QVPPM+SA+K G
Sbjct: 75 KAYLAECRLGVTTETADSEGEVVRQRPVPQLGAAAIEAALVKLRGRILQVPPMYSALKQG 134
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKA 490
GE++Y KARRGE++E+ PR + +++ ++ D L V C GTY+RSL D G+
Sbjct: 135 GERLYAKARRGETVEVPPREVEVYRLEL--LARDGDTLQLLVECGSGTYVRSLAVDLGED 192
Query: 491 LGSCAHLTALRRDSIGQYSADDAWEFKELEEA 522
LG AHLTALRR + + +LE+A
Sbjct: 193 LGCGAHLTALRRIWVEPFREPQMVTLAQLEQA 224
>gi|420864515|ref|ZP_15327905.1| tRNA pseudouridine synthase B [Mycobacterium abscessus 4S-0303]
gi|420869306|ref|ZP_15332688.1| tRNA pseudouridine synthase B [Mycobacterium abscessus 4S-0726-RA]
gi|420873750|ref|ZP_15337127.1| tRNA pseudouridine synthase B [Mycobacterium abscessus 4S-0726-RB]
gi|420910729|ref|ZP_15374041.1| tRNA pseudouridine synthase B [Mycobacterium abscessus 6G-0125-R]
gi|420917180|ref|ZP_15380484.1| tRNA pseudouridine synthase B [Mycobacterium abscessus 6G-0125-S]
gi|420922345|ref|ZP_15385642.1| tRNA pseudouridine synthase B [Mycobacterium abscessus 6G-0728-S]
gi|420928008|ref|ZP_15391290.1| tRNA pseudouridine synthase B [Mycobacterium abscessus 6G-1108]
gi|420967617|ref|ZP_15430821.1| tRNA pseudouridine synthase B [Mycobacterium abscessus 3A-0810-R]
gi|420978348|ref|ZP_15441526.1| tRNA pseudouridine synthase B [Mycobacterium abscessus 6G-0212]
gi|420983733|ref|ZP_15446900.1| tRNA pseudouridine synthase B [Mycobacterium abscessus 6G-0728-R]
gi|420989346|ref|ZP_15452502.1| tRNA pseudouridine synthase B [Mycobacterium abscessus 4S-0206]
gi|421007585|ref|ZP_15470696.1| tRNA pseudouridine synthase B [Mycobacterium abscessus 3A-0119-R]
gi|421013701|ref|ZP_15476782.1| tRNA pseudouridine synthase B [Mycobacterium abscessus 3A-0122-R]
gi|421018649|ref|ZP_15481707.1| tRNA pseudouridine synthase B [Mycobacterium abscessus 3A-0122-S]
gi|421024922|ref|ZP_15487966.1| tRNA pseudouridine synthase B [Mycobacterium abscessus 3A-0731]
gi|421029769|ref|ZP_15492801.1| tRNA pseudouridine synthase B [Mycobacterium abscessus 3A-0930-R]
gi|421035077|ref|ZP_15498097.1| tRNA pseudouridine synthase B [Mycobacterium abscessus 3A-0930-S]
gi|421039873|ref|ZP_15502882.1| tRNA pseudouridine synthase B [Mycobacterium abscessus 4S-0116-R]
gi|421044105|ref|ZP_15507106.1| tRNA pseudouridine synthase B [Mycobacterium abscessus 4S-0116-S]
gi|392068776|gb|EIT94623.1| tRNA pseudouridine synthase B [Mycobacterium abscessus 4S-0726-RA]
gi|392071490|gb|EIT97336.1| tRNA pseudouridine synthase B [Mycobacterium abscessus 4S-0303]
gi|392072778|gb|EIT98619.1| tRNA pseudouridine synthase B [Mycobacterium abscessus 4S-0726-RB]
gi|392112723|gb|EIU38492.1| tRNA pseudouridine synthase B [Mycobacterium abscessus 6G-0125-R]
gi|392121320|gb|EIU47086.1| tRNA pseudouridine synthase B [Mycobacterium abscessus 6G-0125-S]
gi|392132181|gb|EIU57927.1| tRNA pseudouridine synthase B [Mycobacterium abscessus 6G-0728-S]
gi|392135241|gb|EIU60982.1| tRNA pseudouridine synthase B [Mycobacterium abscessus 6G-1108]
gi|392166622|gb|EIU92307.1| tRNA pseudouridine synthase B [Mycobacterium abscessus 6G-0212]
gi|392168729|gb|EIU94407.1| tRNA pseudouridine synthase B [Mycobacterium abscessus 6G-0728-R]
gi|392183625|gb|EIV09276.1| tRNA pseudouridine synthase B [Mycobacterium abscessus 4S-0206]
gi|392199038|gb|EIV24648.1| tRNA pseudouridine synthase B [Mycobacterium abscessus 3A-0119-R]
gi|392202049|gb|EIV27647.1| tRNA pseudouridine synthase B [Mycobacterium abscessus 3A-0122-R]
gi|392208524|gb|EIV34098.1| tRNA pseudouridine synthase B [Mycobacterium abscessus 3A-0122-S]
gi|392211719|gb|EIV37285.1| tRNA pseudouridine synthase B [Mycobacterium abscessus 3A-0731]
gi|392224521|gb|EIV50041.1| tRNA pseudouridine synthase B [Mycobacterium abscessus 3A-0930-R]
gi|392224965|gb|EIV50484.1| tRNA pseudouridine synthase B [Mycobacterium abscessus 4S-0116-R]
gi|392225809|gb|EIV51324.1| tRNA pseudouridine synthase B [Mycobacterium abscessus 3A-0930-S]
gi|392237957|gb|EIV63451.1| tRNA pseudouridine synthase B [Mycobacterium abscessus 4S-0116-S]
gi|392250124|gb|EIV75598.1| tRNA pseudouridine synthase B [Mycobacterium abscessus 3A-0810-R]
Length = 280
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 91/208 (43%), Positives = 125/208 (60%), Gaps = 3/208 (1%)
Query: 320 WTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSGVFRL 379
TS V + RR+ +KVGHAGTLDPMATG+L++ + +ATK++ K Y+ R
Sbjct: 1 MTSHDVVSRCRRIFSTRKVGHAGTLDPMATGVLVIGIERATKIMGLLTLTTKSYAATIRF 60
Query: 380 GEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEKMYDKAR 439
G++TST DA+ V+Q H+ + DI A A RG+I QVP SAIKV G++ Y AR
Sbjct: 61 GQSTSTDDAEGEVLQTISASHLTEVDIEAAVAGLRGDIAQVPSSVSAIKVDGQRAYKLAR 120
Query: 440 RGESIELSPRRISIFQFD---IERSLEDRQNLIFRVTCSKGTYIRSLCADFGKALGSCAH 496
G+S+EL+ R + I +FD + S ED ++ + CS GTYIR+L D G ALG H
Sbjct: 121 EGQSVELAARPVRISRFDVLAVRGSGEDLIDVDVEIDCSSGTYIRALARDAGAALGVGGH 180
Query: 497 LTALRRDSIGQYSADDAWEFKELEEAIT 524
LTALRR +G + D A +EL + T
Sbjct: 181 LTALRRTRVGDFGLDRARTLEELADGAT 208
>gi|422349685|ref|ZP_16430574.1| tRNA pseudouridine synthase B [Sutterella wadsworthensis
2_1_59BFAA]
gi|404657894|gb|EKB30774.1| tRNA pseudouridine synthase B [Sutterella wadsworthensis
2_1_59BFAA]
Length = 297
Score = 176 bits (445), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 97/217 (44%), Positives = 134/217 (61%), Gaps = 7/217 (3%)
Query: 307 PFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRY 366
P ++L++KP G +S +RRLV +K GH GTLDPMATGLL +C G ATK
Sbjct: 7 PIDGVMLLDKPLGMSSNAALQTVRRLVNAQKAGHTGTLDPMATGLLPLCFGNATKFSADL 66
Query: 367 QGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSA 426
KGY +LGE +ST DA+ +++R P + + E + +A A+F GEI Q+PPM+SA
Sbjct: 67 LHAEKGYVARVKLGEVSSTGDAEGEIVERHPVD-VTAEALEEAVAAFLGEIVQIPPMYSA 125
Query: 427 IKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTC--SKGTYIRSLC 484
+KV G+ +Y AR+GE++E +PR +++ + + D F +TC SKGTYIR L
Sbjct: 126 LKVNGKCLYQLARQGETVERAPRTVTVREI----AASDFDGTSFTLTCLVSKGTYIRVLA 181
Query: 485 ADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
D G+ LG AHLTALRR +G S DDA + LEE
Sbjct: 182 EDIGRRLGCGAHLTALRRTRVGDLSIDDAVTVETLEE 218
>gi|153807128|ref|ZP_01959796.1| hypothetical protein BACCAC_01405 [Bacteroides caccae ATCC 43185]
gi|149130248|gb|EDM21458.1| tRNA pseudouridine synthase B [Bacteroides caccae ATCC 43185]
Length = 240
Score = 176 bits (445), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 99/221 (44%), Positives = 133/221 (60%), Gaps = 11/221 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR----RLVKVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G ++ NKP GWTSF V G R R + VKK VGHAGTLDP+ATG++IVC GKATK
Sbjct: 6 GEVLFFNKPLGWTSFKVVGHARYHICRRIGVKKLKVGHAGTLDPLATGVMIVCTGKATKR 65
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ +Q K Y RLG T ++D + + P HI E + + F G I QVPP
Sbjct: 66 IEEFQYHTKEYVATLRLGATTPSYDLEHEIDATYPTGHITRELVEEVLTHFIGTIEQVPP 125
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFD-IERSLEDRQNLI-FRVTCSKGTYI 480
FSA V G++ Y+ AR+GE +EL +++ I + + +E LE+ + +I RV CSKGTYI
Sbjct: 126 AFSACMVDGKRAYELARKGEEVELKAKQLVIDEIELLECRLEEPEPMIRIRVVCSKGTYI 185
Query: 481 RSLCADFGKALGSCAHLTALRRDSIGQYSADDAWE---FKE 518
R+L D G+AL S AHLT L R +G +D + FKE
Sbjct: 186 RALARDIGEALHSGAHLTGLIRTRVGDVRLEDCLDPALFKE 226
>gi|319950922|ref|ZP_08024799.1| tRNA pseudouridine synthase B [Dietzia cinnamea P4]
gi|319435415|gb|EFV90658.1| tRNA pseudouridine synthase B [Dietzia cinnamea P4]
Length = 303
Score = 176 bits (445), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 95/212 (44%), Positives = 128/212 (60%), Gaps = 2/212 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G +S V G+LRR +KVGHAGTLDPMATG+L+V + +ATK++
Sbjct: 16 LVVVDKPGGMSSHDVVGRLRRYFGTRKVGHAGTLDPMATGVLVVGIERATKMLGLLALET 75
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y RLG+ T+T DA+ + DE I A A+ GEI QVP SAIKV
Sbjct: 76 KSYEATIRLGQTTTTDDAEGETTSTTDASAVTDEAIDAAVAALTGEIDQVPSAVSAIKVD 135
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDI-ERSLED-RQNLIFRVTCSKGTYIRSLCADFG 488
G + Y++ R GE +EL RR+++ +FD+ ER+ +L+ V CS GTYIR+L D G
Sbjct: 136 GRRAYERVRAGEEVELRSRRVTVSRFDVLERTRSGAVVDLVVVVDCSTGTYIRALARDLG 195
Query: 489 KALGSCAHLTALRRDSIGQYSADDAWEFKELE 520
ALG HLTALRR +G + D A +LE
Sbjct: 196 SALGVGGHLTALRRTHVGPFGLDVARTLDQLE 227
>gi|213964398|ref|ZP_03392598.1| tRNA pseudouridine synthase B [Corynebacterium amycolatum SK46]
gi|213952591|gb|EEB63973.1| tRNA pseudouridine synthase B [Corynebacterium amycolatum SK46]
Length = 328
Score = 176 bits (445), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 87/217 (40%), Positives = 128/217 (58%), Gaps = 8/217 (3%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP+GWTS V GKLRR+ + KKVGH+GTLDPMATG+L++ +G+ T+ +
Sbjct: 12 IVIVDKPQGWTSHDVVGKLRRIFRTKKVGHSGTLDPMATGVLVLGIGRGTRFLPHVHADT 71
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y RLG AT T DA+ ++ + DE IR+ F G I Q P SA+K+
Sbjct: 72 KSYRATIRLGAATLTDDAEGELLSESSAASVTDEMIREKITDFTGTIMQKPAAVSAVKID 131
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQ--------NLIFRVTCSKGTYIRS 482
G + Y++ RRGE +++ R ++I ++++ D ++ V CS GT+IR+
Sbjct: 132 GVRAYERIRRGEKVDIPARPVTITRYEVLDIRHDSDTSRPGECIDIDVEVDCSAGTFIRA 191
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKEL 519
L D G ALG HLTALRR + G ++ D+A EL
Sbjct: 192 LARDLGDALGVGGHLTALRRTAAGVFTIDEALTIDEL 228
>gi|352081368|ref|ZP_08952246.1| tRNA pseudouridine synthase B [Rhodanobacter sp. 2APBS1]
gi|351683409|gb|EHA66493.1| tRNA pseudouridine synthase B [Rhodanobacter sp. 2APBS1]
Length = 308
Score = 176 bits (445), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 89/212 (41%), Positives = 125/212 (58%), Gaps = 2/212 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+VL++KP+G +S +RRL++ K GH G LDP+ATGLL +C G+ATKL G
Sbjct: 15 IVLLDKPRGLSSNQALQAVRRLLRASKGGHTGALDPLATGLLPLCFGEATKLAGSLLGAR 74
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y RLG T T D++ V+++ P + I A RG I QVPPM+SA+K G
Sbjct: 75 KAYLAECRLGVTTETADSEGEVVRQRPVPQLGAAAIEAALVKLRGRILQVPPMYSALKQG 134
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKA 490
GE++Y KARRGE++E+ PR + +++ ++ D L V C GTY+RSL D G+
Sbjct: 135 GERLYAKARRGETVEVPPREVEVYRLEL--LARDGDTLQLLVECGSGTYVRSLAVDLGED 192
Query: 491 LGSCAHLTALRRDSIGQYSADDAWEFKELEEA 522
LG AHLTALRR + + +LE+A
Sbjct: 193 LGCGAHLTALRRIWVEPFREPQMVTLAQLEQA 224
>gi|383115715|ref|ZP_09936470.1| tRNA pseudouridine synthase B [Bacteroides sp. D2]
gi|313694882|gb|EFS31717.1| tRNA pseudouridine synthase B [Bacteroides sp. D2]
Length = 240
Score = 176 bits (445), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 99/221 (44%), Positives = 133/221 (60%), Gaps = 11/221 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR----RLVKVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G ++ NKP GWTSF V G R R + VKK VGHAGTLDP+ATG++I+C GKATK
Sbjct: 6 GEVLFFNKPFGWTSFKVVGHARYHICRRIGVKKLKVGHAGTLDPLATGVMILCTGKATKR 65
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ +Q K Y RLG T ++D + + P EHI E + + F G I QVPP
Sbjct: 66 IEEFQYHTKEYVATLRLGATTPSYDLEHEIDATYPTEHITRELVEEVLTHFIGAIDQVPP 125
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFD-IERSLEDRQNLI-FRVTCSKGTYI 480
FSA V G++ Y+ AR+GE +EL +++ I + + +E L+D + +I RV CSKGTYI
Sbjct: 126 AFSACMVDGKRAYELARKGEEVELKAKQLVIDEIELLECRLDDPEPMIQIRVVCSKGTYI 185
Query: 481 RSLCADFGKALGSCAHLTALRRDSIGQYSADDAW---EFKE 518
R+L D G+AL S AHLT L R +G +D FKE
Sbjct: 186 RALARDIGEALHSGAHLTGLIRTRVGDVRLEDCLNPEHFKE 226
>gi|84498579|ref|ZP_00997342.1| tRNA pseudouridine synthase B [Janibacter sp. HTCC2649]
gi|84381112|gb|EAP96997.1| tRNA pseudouridine synthase B [Janibacter sp. HTCC2649]
Length = 312
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 102/231 (44%), Positives = 138/231 (59%), Gaps = 15/231 (6%)
Query: 301 PPTWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKAT 360
PP DG +++V+KP WTS V + RRL +KVGHAGTLDPMATG+L++ VG+AT
Sbjct: 5 PPHTDG----LLVVDKPSEWTSHDVVARARRLCNTRKVGHAGTLDPMATGVLVLGVGRAT 60
Query: 361 KLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQV 420
KL+ G+ K Y+ RLG+AT T DA+ V + D+ I A A+ G I QV
Sbjct: 61 KLLTFLVGVDKDYTATIRLGQATLTDDAEGEVTSAPGAAEVDDDAIAAAVATLTGAIEQV 120
Query: 421 PPMFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDI---ERSL---EDRQNLIF---- 470
P SAIK+ G++ Y +AR GES++L R +++ +F+I RS ED +L
Sbjct: 121 PSSVSAIKIKGQRSYHRARAGESVDLPARPVTVSRFEIGETRRSTTQGEDGSDLAIVDVD 180
Query: 471 -RVTCSKGTYIRSLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELE 520
VT S GTY+R+L D G ALGS HLTALRR +G + D A+ +LE
Sbjct: 181 VEVTVSSGTYVRALARDLGTALGSAGHLTALRRTRVGGFGLDTAYPLSDLE 231
>gi|420144442|ref|ZP_14651930.1| tRNA pseudouridine synthase B [Lactococcus garvieae IPLA 31405]
gi|391855894|gb|EIT66443.1| tRNA pseudouridine synthase B [Lactococcus garvieae IPLA 31405]
Length = 301
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 91/214 (42%), Positives = 129/214 (60%), Gaps = 4/214 (1%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
V K GWTSF V KLR ++K KK+GH GTLDP TG+L V VGKAT+L++ + K Y
Sbjct: 7 VYKEAGWTSFDVVAKLRGILKTKKIGHGGTLDPQVTGVLPVAVGKATRLLEYMEEAGKVY 66
Query: 374 SGVFRLGEATSTWDADSPVIQREPW-EHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGE 432
G +G +T T DA+ V++ P + DE+I + F GEI QVPPM+SA+KV G+
Sbjct: 67 EGEVTIGFSTETEDAEGEVLETTPVPSTLSDEEIDEVMTHFVGEIQQVPPMYSAVKVKGK 126
Query: 433 KMYDKARRGESIELSPRRISIFQFDIERSL---EDRQNLIFRVTCSKGTYIRSLCADFGK 489
++Y+ AR G+++E R+++I F + ED FRV CSKGTYIR+L D
Sbjct: 127 RLYEYARAGQTVERPKRKVTIKSFVRTSPVTFEEDCARFTFRVACSKGTYIRTLAVDLSH 186
Query: 490 ALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
ALG H++ L+R + + D A +E+E +
Sbjct: 187 ALGYAGHMSKLQRTAANGLNIDQALTLEEVEAMV 220
>gi|240146070|ref|ZP_04744671.1| tRNA pseudouridine 55 synthase [Roseburia intestinalis L1-82]
gi|257201815|gb|EEV00100.1| tRNA pseudouridine 55 synthase [Roseburia intestinalis L1-82]
gi|291536073|emb|CBL09185.1| tRNA pseudouridine synthase B [Roseburia intestinalis M50/1]
Length = 321
Score = 175 bits (444), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 91/215 (42%), Positives = 130/215 (60%), Gaps = 3/215 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ V K KG+TSF V KLR ++K KK+GH GTLDP A G+L VC+GKATK+ D
Sbjct: 15 IINVYKEKGYTSFDVVAKLRGILKTKKIGHTGTLDPDAEGVLPVCLGKATKVCDLLTDKN 74
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y V LG+ T T D V++ P E + +E +++A SF GE QVPPM+SA+KV
Sbjct: 75 KEYVAVMLLGKVTDTQDTTGTVLEEHPVE-VTEEQVKEAVLSFTGEYMQVPPMYSALKVN 133
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKA 490
G+K+ D AR G ++E R + ++ +I + + + RV CSKGTYIR+LC D G+
Sbjct: 134 GKKLCDLARAGVTVERQARPVQLYSIEIIKM--ELPRVCMRVRCSKGTYIRTLCQDIGEK 191
Query: 491 LGSCAHLTALRRDSIGQYSADDAWEFKELEEAITK 525
L A + +L R + ++ DA E+EE + K
Sbjct: 192 LSCGACMESLLRTKVSEFCVQDALRLSEIEERVQK 226
>gi|423558627|ref|ZP_17534929.1| tRNA pseudouridine synthase B [Bacillus cereus MC67]
gi|401191895|gb|EJQ98917.1| tRNA pseudouridine synthase B [Bacillus cereus MC67]
Length = 307
Score = 175 bits (444), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 89/218 (40%), Positives = 140/218 (64%), Gaps = 5/218 (2%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+VL++KPKG TS KLR++++ K++GH GTLDP TG+L +CVG+ATK+
Sbjct: 4 VVLLHKPKGMTSHDCVFKLRKILREKRIGHTGTLDPDVTGVLPICVGRATKIAQFLTSET 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V++++ I +++ + A G I Q+PPMFSA+KV
Sbjct: 64 KTYEGEVTLGFSTTTEDASGEVVEKQDVNRVITRKEVEEVLAELTGTIEQMPPMFSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDI--ERSLEDRQNLI--FRVTCSKGTYIRSLCA 485
G+K+Y+ AR G+ +E R I+I +F + ER + + +N+ FRVTCSKGTY+R+L
Sbjct: 124 NGKKLYEYARAGQEVERPVRTITIHEFVLLDEREVFEGENISFRFRVTCSKGTYVRTLAV 183
Query: 486 DFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
G+ LG +H++ L R + G++ +D F+E+EE++
Sbjct: 184 MIGEKLGFPSHMSHLVRTASGEFLLEDCISFEEIEESV 221
>gi|376260775|ref|YP_005147495.1| tRNA pseudouridine 55 synthase [Clostridium sp. BNL1100]
gi|373944769|gb|AEY65690.1| tRNA pseudouridine 55 synthase [Clostridium sp. BNL1100]
Length = 309
Score = 175 bits (444), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 95/222 (42%), Positives = 131/222 (59%), Gaps = 19/222 (8%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
V KP G TSF V G +RR+ KK+GHAGTLDP A G+L +C+G AT+ ++ K Y
Sbjct: 7 VLKPAGMTSFDVIGFMRRITGQKKIGHAGTLDPSAVGVLPLCIGNATRALEFMIDKDKVY 66
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEK 433
LG +T T D+ V+ E + D++I+KA SF G I Q+PPM+SAIK+GG+K
Sbjct: 67 RAELTLGISTDTQDSSGIVLDSYSVE-VNDDEIKKAIMSFVGTIEQLPPMYSAIKIGGKK 125
Query: 434 MYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFR----------------VTCSKG 477
+Y+ AR+G++IE R I I+ D+ R +D N+IF V CSKG
Sbjct: 126 LYELARQGQTIERESRTIQIYNIDVIRIWDD--NVIFESEGVTQEFAAKKVLLDVHCSKG 183
Query: 478 TYIRSLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKEL 519
TYIR+LC D G+ LG H++ L R GQY D+A +E+
Sbjct: 184 TYIRTLCNDIGEKLGCGGHMSFLVRTRAGQYDLDNALTMEEI 225
>gi|371777461|ref|ZP_09483783.1| tRNA pseudouridine synthase B [Anaerophaga sp. HS1]
Length = 253
Score = 175 bits (444), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 99/230 (43%), Positives = 136/230 (59%), Gaps = 14/230 (6%)
Query: 293 IVSRSTELPPTWDGPFGTMVLVNKPKGWTSFTVCGK----LRRLVKVKK--VGHAGTLDP 346
I++ TEL + G ++L++KP GWTSF V K LR+L+ +KK VGHAGTLDP
Sbjct: 6 IIADITELSHPDEVKGGIVLLIDKPLGWTSFDVVNKIRSRLRKLMNIKKIKVGHAGTLDP 65
Query: 347 MATGLLIVCVGKATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDI 406
+ATGL+IVC+G+ATK +D + K Y + G T ++D ++ + Q P EHI E +
Sbjct: 66 LATGLVIVCIGRATKAIDFFMASEKEYVARVKFGATTPSFDLETEIDQVFPVEHINREKL 125
Query: 407 RKAAASFRGEIWQVPPMFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQ 466
+K F G Q+PP FSA+K+ G + Y AR + + + R ++ E L D Q
Sbjct: 126 KKTLEDFCGIQQQIPPAFSAVKINGTRAYHLARNSKEVNIEAREVTFH----EIKLLDFQ 181
Query: 467 NL---IFRVTCSKGTYIRSLCADFGKALGSCAHLTALRRDSIGQYSADDA 513
N I+ + CSKGTYIRS D GKAL S AHL+ LRR IGQ+ DA
Sbjct: 182 NYEADIY-LRCSKGTYIRSFARDLGKALKSGAHLSGLRRTGIGQHKVSDA 230
>gi|317058464|ref|ZP_07922949.1| tRNA pseudouridine synthase B [Fusobacterium sp. 3_1_5R]
gi|313684140|gb|EFS20975.1| tRNA pseudouridine synthase B [Fusobacterium sp. 3_1_5R]
Length = 285
Score = 175 bits (444), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 86/213 (40%), Positives = 134/213 (62%), Gaps = 2/213 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++++NK KG +SF V LR+L++ +K+GH GTLDP+ATG+LI+C+GKAT+L +
Sbjct: 4 IIIINKEKGMSSFDVIRSLRKLLQERKIGHTGTLDPLATGVLILCLGKATRLAQEIEAQE 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y G T T+D + ++ P + +K E+ + + ++G+I Q+PPM+SAIK+
Sbjct: 64 KVYEAEMEFGYQTDTYDLEGEIVATSPKKEVKREEFEEVLSHWKGKISQIPPMYSAIKIQ 123
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKA 490
G+K+Y+ AR+G IE R + IF DI E ++ I R SKGTYIRSL D G+
Sbjct: 124 GKKLYELARKGIEIEREGREVEIFGIDI-LDFEGKKAKI-RTKVSKGTYIRSLIYDIGEE 181
Query: 491 LGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
LGS A +TAL R +G++ +++ E+ + I
Sbjct: 182 LGSFATMTALNRIQVGEHHLKNSYTISEIHDKI 214
>gi|340398817|ref|YP_004727842.1| tRNA pseudouridine synthase B [Streptococcus salivarius CCHSS3]
gi|338742810|emb|CCB93318.1| tRNA pseudouridine synthase B (tRNA pseudouridine 55 synthase)
(Psi55 synthase) (tRNA-uridine isomerase) (tRNA
pseudouridylate synthase) [Streptococcus salivarius
CCHSS3]
Length = 280
Score = 175 bits (444), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 86/207 (41%), Positives = 127/207 (61%), Gaps = 3/207 (1%)
Query: 320 WTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSGVFRL 379
TS KLR++++ KK+GH GTLDP TG+L + VGKAT++++ K Y G +
Sbjct: 1 MTSHDAVFKLRKILQEKKIGHGGTLDPDVTGVLPIAVGKATRVIEYMTEAGKVYEGEITI 60
Query: 380 GEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEKMYDKAR 439
G +T+T DA ++Q P + +E + KA ASF GEI Q+PPM+SA+KV G+K+Y+ AR
Sbjct: 61 GFSTTTEDASGEIVQTTPVTELDEEAVDKAMASFEGEITQIPPMYSAVKVNGKKLYEYAR 120
Query: 440 RGESIELSPRRISIFQFDIERSLE---DRQNLIFRVTCSKGTYIRSLCADFGKALGSCAH 496
GE +E R+++I +F +E D FRV CSKGTY+R+L DFG LG +H
Sbjct: 121 AGEEVERPQRQVTITEFVRTSPIELENDTARFTFRVACSKGTYVRTLSVDFGVKLGYASH 180
Query: 497 LTALRRDSIGQYSADDAWEFKELEEAI 523
++ALRR + + D A ++ E +
Sbjct: 181 MSALRRTASAGLTLDKALTLSQISEMV 207
>gi|319937191|ref|ZP_08011598.1| tRNA pseudouridine synthase B [Coprobacillus sp. 29_1]
gi|319807557|gb|EFW04150.1| tRNA pseudouridine synthase B [Coprobacillus sp. 29_1]
Length = 278
Score = 175 bits (443), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 88/210 (41%), Positives = 128/210 (60%), Gaps = 4/210 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L++KP G TS V ++RR++ KKVGH GTLDP ATG+L++C+GKATK +
Sbjct: 4 ILLIHKPSGMTSHDVVNRIRRILHTKKVGHCGTLDPDATGVLVLCIGKATKALQFLMSEE 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y LG AT T+DA VI+ ++ + E++ + SF G Q+PP++SAIKV
Sbjct: 64 KEYITTLSLGTATDTYDASGTVIESREYDGV--ENVVEVLQSFVGNQKQIPPIYSAIKVK 121
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKA 490
G+K+Y+ AR E +++ PR I I + IE +D + RV CSKGTYIRSLC D K
Sbjct: 122 GKKLYEYARNHEEVKIEPRDIIIHE--IELLQQDENEITLRVRCSKGTYIRSLCVDIAKK 179
Query: 491 LGSCAHLTALRRDSIGQYSADDAWEFKELE 520
LG H++ L R G + +D +++E
Sbjct: 180 LGYPGHMSKLIRSQSGHFRLEDCSTLEDIE 209
>gi|291514903|emb|CBK64113.1| tRNA pseudouridine synthase B [Alistipes shahii WAL 8301]
Length = 238
Score = 175 bits (443), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 99/222 (44%), Positives = 134/222 (60%), Gaps = 7/222 (3%)
Query: 309 GTMVLVNKPKGWTSFTVCGK----LRRLVKVK-KVGHAGTLDPMATGLLIVCVGKATKLV 363
G + +V+KP WTS V K LRRL K KVGHAGTLDP+ATG+L+VC+G+ATKLV
Sbjct: 15 GYIAVVDKPLRWTSTDVVRKIKFALRRLGYRKIKVGHAGTLDPLATGILLVCIGRATKLV 74
Query: 364 DRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPM 423
D Q K Y LG T + D + + + PWEHI E + +A AS GE Q PP+
Sbjct: 75 DALQAEEKEYVADVMLGATTPSHDLEHEIDRTYPWEHITREAVAEALASLTGERLQTPPV 134
Query: 424 FSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSL 483
+SA K+ G + Y+ AR GE + + I+I++ +I D + RV CSKGTYIRSL
Sbjct: 135 YSAKKIDGTRAYELARAGEEVAVRQALINIYEMEIVEY--DLPRVRIRVRCSKGTYIRSL 192
Query: 484 CADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAITK 525
+ G+AL S AHLT+LRR G ++ + ++E E E + K
Sbjct: 193 AHEIGQALRSGAHLTSLRRTRSGGFTLEKSYELDEFLENLQK 234
>gi|227543267|ref|ZP_03973316.1| tRNA pseudouridine synthase B [Corynebacterium glucuronolyticum
ATCC 51866]
gi|227180954|gb|EEI61926.1| tRNA pseudouridine synthase B [Corynebacterium glucuronolyticum
ATCC 51866]
Length = 295
Score = 175 bits (443), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 89/214 (41%), Positives = 122/214 (57%), Gaps = 2/214 (0%)
Query: 308 FGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQ 367
G +VLV+KP+G TS +V G +RR KKVGHAGTLDPMATGLL+V V + TK +
Sbjct: 7 LGGLVLVDKPRGMTSHSVVGAIRRYFGTKKVGHAGTLDPMATGLLVVGVERGTKFLAHLV 66
Query: 368 GMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAI 427
K Y RLG+ T+T DAD + + H+ D DI + G+I Q P SAI
Sbjct: 67 AETKTYEATIRLGQETTTEDADGEITREVDASHVTDADIAREVEKLTGDIMQRPSSVSAI 126
Query: 428 KVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADF 487
K+ G++ + R GE +E+ PR ++I F++ + + NL V CS GTYIR+L D
Sbjct: 127 KINGKRAHQLVREGEKVEIPPRPVTIHSFEV--TGREGTNLRVCVHCSSGTYIRALARDL 184
Query: 488 GKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
G LG AHL ALRR ++G + + E+
Sbjct: 185 GHGLGVGAHLIALRRLNVGPFDISRSHPLAHFED 218
>gi|119717412|ref|YP_924377.1| tRNA pseudouridine synthase B [Nocardioides sp. JS614]
gi|119538073|gb|ABL82690.1| tRNA pseudouridine synthase B [Nocardioides sp. JS614]
Length = 289
Score = 175 bits (443), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 90/213 (42%), Positives = 124/213 (58%), Gaps = 2/213 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G TS V ++RRL +KVGHAGTLDPMATG+L++ + +AT+L+
Sbjct: 8 LVVVDKPGGLTSHDVVSRVRRLTGTRKVGHAGTLDPMATGVLVLGINRATRLLGHLMLTE 67
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y RLG ATST DA+ V + + +R AAA F G++ QVP SAIKV
Sbjct: 68 KAYDATIRLGVATSTDDAEGEVTATASAAGLDEATVRAAAAEFVGDLLQVPTAVSAIKVD 127
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIE--RSLEDRQNLIFRVTCSKGTYIRSLCADFG 488
G++ Y + R GE + L R +++ + + R D +L V CS GTY+R++ D G
Sbjct: 128 GKRAYQRVRAGEEVALEARPVTVHELVVHEVRPAGDTCDLDVAVRCSSGTYVRAIARDLG 187
Query: 489 KALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
LG HLTALRR ++G Y D A EL E
Sbjct: 188 ARLGVGGHLTALRRTAVGPYGLDVAHTLDELGE 220
>gi|423458007|ref|ZP_17434804.1| tRNA pseudouridine synthase B [Bacillus cereus BAG5X2-1]
gi|401148391|gb|EJQ55884.1| tRNA pseudouridine synthase B [Bacillus cereus BAG5X2-1]
Length = 307
Score = 175 bits (443), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 91/221 (41%), Positives = 140/221 (63%), Gaps = 11/221 (4%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+VL++KPKG TS KLR++++ K++GH GTLDP TG+L +CVG+ATK+
Sbjct: 4 VVLLHKPKGMTSHDCVFKLRKILREKRIGHTGTLDPDVTGVLPICVGRATKIAQFLTSET 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V++R+ + I +++ A A+ G I Q+PPMFSA+KV
Sbjct: 64 KTYEGEVTLGFSTTTEDASGEVVERKNVDRVITRKEVEGALAALTGTIEQMPPMFSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQ-------NLIFRVTCSKGTYIRS 482
G+K+Y+ AR G+ +E R I+I +F + L+DR+ + FRVTCSKGTY+R+
Sbjct: 124 NGKKLYEYARAGQEVERPVRTITIHEFVL---LDDREVFEGETISFRFRVTCSKGTYVRT 180
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
L G+ LG +H++ L R + G++ +D F+E+EE +
Sbjct: 181 LAVMIGEKLGFPSHMSHLVRTASGEFLLEDCISFEEIEENV 221
>gi|334365475|ref|ZP_08514428.1| tRNA pseudouridine synthase B [Alistipes sp. HGB5]
gi|313158239|gb|EFR57641.1| tRNA pseudouridine synthase B [Alistipes sp. HGB5]
Length = 238
Score = 175 bits (443), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 102/227 (44%), Positives = 141/227 (62%), Gaps = 13/227 (5%)
Query: 309 GTMVLVNKPKGWTSFTVCGK----LRRLVKVK-KVGHAGTLDPMATGLLIVCVGKATKLV 363
G + +++KP WTS V K LRRL K KVGHAGTLDP+ATG+L+VC+G+ATK+V
Sbjct: 15 GYIAVLDKPLRWTSTDVVRKIKFTLRRLGYRKIKVGHAGTLDPLATGILLVCIGRATKMV 74
Query: 364 DRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPM 423
D Q K Y LG T ++D + PV + P EHI E + +A +S GE Q PP+
Sbjct: 75 DALQAEEKEYVADVMLGATTPSYDLEHPVDRTFPTEHITREKVLEALSSLTGERLQEPPV 134
Query: 424 FSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLE-DRQNLIFRVTCSKGTYIRS 482
+SA K+ G + Y+ AR GE + + ++I++ ++ LE D + RV CSKGTYIRS
Sbjct: 135 YSAKKIDGTRAYELARAGEEVTMRKATVNIYELEL---LEYDLPRIRIRVRCSKGTYIRS 191
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKE----LEEAITK 525
L + G+AL S AHLT+LRR G ++ + A+EF+E LEE TK
Sbjct: 192 LAHEIGQALESGAHLTSLRRTRSGGFTLEKAFEFEEFLKKLEELETK 238
>gi|403234756|ref|ZP_10913342.1| tRNA pseudouridine synthase B [Bacillus sp. 10403023]
Length = 308
Score = 175 bits (443), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 88/217 (40%), Positives = 133/217 (61%), Gaps = 4/217 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L+NKPKG TS K+R+LVK+KKVGH GTLDP +G+L VC+G+ATK+V+
Sbjct: 4 ILLLNKPKGMTSHDCVFKVRKLVKMKKVGHTGTLDPDVSGVLPVCLGRATKIVEYVTAAN 63
Query: 371 KGYSGVFRLGEATSTWDADSPVI-QREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA ++ ++ I E++ S GEI Q PPM+SA+KV
Sbjct: 64 KTYEGEVTLGFSTTTEDASGEIVGEKRVDREIMKEEVVNVLHSLTGEIIQTPPMYSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLI---FRVTCSKGTYIRSLCAD 486
G+++Y+ AR+G I+ R I+I + ++ + + FRVTCSKGTY+R+L
Sbjct: 124 NGKRLYEYARKGIVIDRPSRNITIHKLELISDINQNDQTVSFRFRVTCSKGTYVRTLAVQ 183
Query: 487 FGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
G+ LG +H++ LRR S G+++ + ELE +
Sbjct: 184 MGEKLGYPSHMSDLRRTSSGEFTLEQCITLDELEHIV 220
>gi|29348622|ref|NP_812125.1| tRNA pseudouridine synthase B [Bacteroides thetaiotaomicron
VPI-5482]
gi|298386990|ref|ZP_06996544.1| tRNA pseudouridine synthase B [Bacteroides sp. 1_1_14]
gi|383124792|ref|ZP_09945453.1| tRNA pseudouridine synthase B [Bacteroides sp. 1_1_6]
gi|37088414|sp|Q8A2U2.1|TRUB_BACTN RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|29340527|gb|AAO78319.1| tRNA pseudouridine synthase B [Bacteroides thetaiotaomicron
VPI-5482]
gi|251841054|gb|EES69135.1| tRNA pseudouridine synthase B [Bacteroides sp. 1_1_6]
gi|298260140|gb|EFI03010.1| tRNA pseudouridine synthase B [Bacteroides sp. 1_1_14]
Length = 240
Score = 175 bits (443), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 97/226 (42%), Positives = 135/226 (59%), Gaps = 8/226 (3%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR----RLVKVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G ++ NKP GWTSF V G +R R + VKK VGHAGTLDP+ATG++I+C GKATK
Sbjct: 6 GEVLFFNKPLGWTSFKVVGHVRYHICRRIGVKKLKVGHAGTLDPLATGVMILCTGKATKR 65
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ +Q K Y RLG T ++D + + P HI E + + F G I QVPP
Sbjct: 66 IEEFQYHTKEYVATLRLGATTPSYDLEHEIDATYPTGHITRELVEETLTHFLGAIEQVPP 125
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFD-IERSLEDRQNLI-FRVTCSKGTYI 480
FSA V G++ Y+ AR+GE +EL +++ I + + +E L+D + I RV CSKGTYI
Sbjct: 126 AFSACMVDGKRAYELARKGEEVELKAKQLVIDEIELLECRLDDPEPTIRIRVVCSKGTYI 185
Query: 481 RSLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAITKN 526
R+L D G+AL S AHLT L R +G +D + + +E I +
Sbjct: 186 RALARDIGEALQSGAHLTELIRTRVGDVRLEDCLDPEHFKEWIDRQ 231
>gi|297242935|ref|ZP_06926873.1| tRNA pseudouridine synthase B [Gardnerella vaginalis AMD]
gi|415709540|ref|ZP_11463165.1| tRNA pseudouridine synthase B [Gardnerella vaginalis 6420B]
gi|296889146|gb|EFH27880.1| tRNA pseudouridine synthase B [Gardnerella vaginalis AMD]
gi|388056212|gb|EIK79088.1| tRNA pseudouridine synthase B [Gardnerella vaginalis 6420B]
Length = 367
Score = 174 bits (442), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 94/235 (40%), Positives = 137/235 (58%), Gaps = 24/235 (10%)
Query: 307 PFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRY 366
P ++LV+KP+G TS + R L+ K+VGHAGTLDPMATGLLI+ G AT+L++
Sbjct: 4 PDSGLLLVDKPQGVTSHDIVACARHLLHTKRVGHAGTLDPMATGLLIIGFGNATRLLNYM 63
Query: 367 QGMIKGYSGVFRLGEATSTWDADSPVIQRE-----PWEHIKDEDI------------RKA 409
G K Y V RLGEAT+T DA+ ++ + P H+ ++D+ +
Sbjct: 64 LGHNKTYEAVIRLGEATTTDDAEGEILPNDALNIGPGVHVANKDMSFEKSLSFERIKQVV 123
Query: 410 AASFRGEIWQVPPMFSAIKVGGEKMYDKARRGESIELSPRRISIFQFD-----IERSLED 464
+ + G+I Q P FSAIK+ G++ YD AR G+S+E++PR I + F I R +
Sbjct: 124 SENLVGKIMQAPTAFSAIKINGQRAYDLAREGKSVEIAPREIFVSDFSVSNPRITRGVSG 183
Query: 465 RQ--NLIFRVTCSKGTYIRSLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFK 517
+ ++ +V+CS GTYIR+L D G+ LG HLT LRR S+G +S D+ K
Sbjct: 184 KLVCDISAKVSCSSGTYIRALARDLGRLLGVGGHLTQLRRTSVGDFSVTDSRVLK 238
>gi|225016944|ref|ZP_03706136.1| hypothetical protein CLOSTMETH_00859 [Clostridium methylpentosum
DSM 5476]
gi|224950338|gb|EEG31547.1| hypothetical protein CLOSTMETH_00859 [Clostridium methylpentosum
DSM 5476]
Length = 295
Score = 174 bits (442), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 84/211 (39%), Positives = 134/211 (63%), Gaps = 1/211 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ +NKP+G+TSF V KLR + + K++GHAGTLDPMATG+L V +G+ATK +
Sbjct: 4 ILCMNKPEGFTSFDVVAKLRGITRTKRIGHAGTLDPMATGVLPVFLGRATKAISLLPDHT 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y+ F+LG + T D+ ++ R + +++ A +RG I Q+PPM+SA+KV
Sbjct: 64 KRYTAGFQLGLTSDTLDSTGTILSRS-HSTLTQQELLAALEQYRGTISQIPPMYSALKVE 122
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKA 490
G+++Y+ AR+G+++E PR++ IFQ ++ Q + V CS GTYIR+LC D G+
Sbjct: 123 GKRLYELARQGKTVERKPRKVEIFQLELLSFDTKLQTGVLDVGCSSGTYIRTLCDDIGRD 182
Query: 491 LGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
LG A +T+L+R +S D+ F E+++
Sbjct: 183 LGVGAVMTSLQRTEAAGFSLADSRTFDEVQQ 213
>gi|407275670|ref|ZP_11104140.1| tRNA pseudouridine synthase B [Rhodococcus sp. P14]
Length = 305
Score = 174 bits (442), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 92/217 (42%), Positives = 130/217 (59%), Gaps = 6/217 (2%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++V+K G TS V + RRL+ +KVGHAGTLDPMATG+L++ V +ATK++
Sbjct: 14 LLVVDKDAGMTSHDVVARCRRLLGTRKVGHAGTLDPMATGVLVLGVERATKILGLLALTT 73
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y+ RLG++T T DAD V+ + DE I A A+ G+I QVP SAIKV
Sbjct: 74 KAYAATIRLGQSTVTDDADGEVLATTDAAAVTDEAIATAVAALTGDISQVPASVSAIKVD 133
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQ------NLIFRVTCSKGTYIRSLC 484
G++ Y + R GE++EL+ R +++ +F + E R +L V CS GTYIR+L
Sbjct: 134 GKRAYARMRDGETVELAARPVTVSRFAVLARREVRADRGCFVDLDVEVECSSGTYIRALA 193
Query: 485 ADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
D G ALG AHLTALRR +G + + A +LE+
Sbjct: 194 RDLGSALGVGAHLTALRRTRVGPFGLEHARTLAQLED 230
>gi|305681528|ref|ZP_07404335.1| tRNA pseudouridine synthase B [Corynebacterium matruchotii ATCC
14266]
gi|305659733|gb|EFM49233.1| tRNA pseudouridine synthase B [Corynebacterium matruchotii ATCC
14266]
Length = 302
Score = 174 bits (442), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 91/221 (41%), Positives = 125/221 (56%), Gaps = 10/221 (4%)
Query: 307 PFGT--MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVD 364
P T +V+V+KP G TS V G+LRR+ ++VGHAGTLDP+ATG+LIV + + TK +
Sbjct: 8 PLATSGLVVVDKPAGMTSHDVIGRLRRIFHTRRVGHAGTLDPLATGVLIVGINRGTKFLT 67
Query: 365 RYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMF 424
K Y RLG AT+T DA+ I R H+ D+DI A + F G I Q P
Sbjct: 68 HLVAATKSYQATIRLGMATTTDDAEGAEISRADTTHLTDDDITAALSQFIGRIMQRPAAV 127
Query: 425 SAIKVGGEKMYDKARRGESIELSPRRISIFQ-----FDIERSLEDRQNLIFRVTCSKGTY 479
SAIK+ G++ +++ R GESI + R ++I Q FD D V CS GTY
Sbjct: 128 SAIKIDGKRAHERVRAGESITIPAREVTISQLTPTGFDHHDEFIDMN---ITVDCSSGTY 184
Query: 480 IRSLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELE 520
IRS+ D G+ L H+TALRR ++G ++ D +LE
Sbjct: 185 IRSIARDLGEVLHVGGHITALRRTAVGNFTLADTRTLTQLE 225
>gi|357007998|ref|ZP_09072997.1| tRNA pseudouridine synthase B [Paenibacillus elgii B69]
Length = 313
Score = 174 bits (442), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 92/217 (42%), Positives = 134/217 (61%), Gaps = 5/217 (2%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
V KPKG+TS V K+RR+V++K++GH GTLDP TG+L +C+G+AT+LV+ Q + K Y
Sbjct: 11 VWKPKGFTSHDVVAKVRRIVRIKRIGHTGTLDPQVTGVLPLCIGRATRLVEYIQELPKAY 70
Query: 374 SGVFRLGEATSTWDADSPVIQR--EPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGG 431
LG AT T D V++R E + E + A F G+I QVPPM+SA+KV G
Sbjct: 71 EATLLLGLATDTEDLSGEVLERVERLGERLTPEQVTAAVLRFIGDIEQVPPMYSAVKVDG 130
Query: 432 EKMYDKARRGESIELSPRRISIFQFDIERS--LEDRQNLIFRVTCSKGTYIRSLCADFGK 489
+++Y+ AR+G +E R ++I+ ++ + D + FRV CSKGTYIR+LCAD G+
Sbjct: 131 KRLYELARQGVQVERKSRTVTIYGIEVLETDWSGDYPQVKFRVNCSKGTYIRTLCADIGQ 190
Query: 490 ALGSCAHLTALRRDSIGQYSADDAWEFKELEEAITKN 526
ALG A + L R S G + +++ EA+ KN
Sbjct: 191 ALGVPAVMAELVRTSTGHIGPERCLTLEQI-EALHKN 226
>gi|322389230|ref|ZP_08062791.1| tRNA pseudouridine synthase B [Streptococcus parasanguinis ATCC
903]
gi|321144135|gb|EFX39552.1| tRNA pseudouridine synthase B [Streptococcus parasanguinis ATCC
903]
Length = 309
Score = 174 bits (442), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 96/238 (40%), Positives = 139/238 (58%), Gaps = 8/238 (3%)
Query: 293 IVSRSTELPPTWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLL 352
+V++ E DG ++ V K G TS V KLR+++ KK+GH GTLDP G+L
Sbjct: 1 MVTQELERANQMDG----IINVKKEAGMTSHDVVFKLRKILGTKKIGHGGTLDPDVVGVL 56
Query: 353 IVCVGKATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKD-EDIRKAAA 411
+ VGKAT++V+ Q K Y G LG +T+T DA V++R P E D ++ + A
Sbjct: 57 PIAVGKATRMVEFMQDEGKVYEGEITLGFSTTTEDASGEVVERTPVEAPLDAAEVDRMIA 116
Query: 412 SFRGEIWQVPPMFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLI-- 469
GEI QVPPM+SA+KV G K+Y+ AR GE +E R+++I++F + ++L
Sbjct: 117 QMVGEIEQVPPMYSAVKVNGRKLYEYARAGEEVERPVRQVTIYEFTRTSEISYEESLARF 176
Query: 470 -FRVTCSKGTYIRSLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAITKN 526
FRV CSKGTYIR+L D G+ LG AH++ L R S S +DA +E+ E + +
Sbjct: 177 RFRVKCSKGTYIRTLSVDLGQKLGYAAHMSHLTRTSAAGLSLEDALTLEEVTEKVAQG 234
>gi|168180706|ref|ZP_02615370.1| tRNA pseudouridine synthase B [Clostridium botulinum NCTC 2916]
gi|182668377|gb|EDT80356.1| tRNA pseudouridine synthase B [Clostridium botulinum NCTC 2916]
Length = 289
Score = 174 bits (442), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 94/218 (43%), Positives = 133/218 (61%), Gaps = 3/218 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ V KPKG TSF V +R++ K+KKVGH GTLDP+A+G+L VC+GKATK+VD
Sbjct: 4 VINVLKPKGITSFDVVRDIRKIAKIKKVGHTGTLDPLASGVLPVCIGKATKIVDYIMEGT 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y +LG T T+D + V+ E + E++ KA ++G+I QVPPM+SA+K+
Sbjct: 64 KNYRVEMKLGTTTDTYDREGTVLG-EKEVSVSPEEVEKAIEKYKGDIEQVPPMYSALKIN 122
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKA 490
G+K+YD AR+G +E R+I I+ I D +IF V CSKGTYIRSLC D GK
Sbjct: 123 GQKLYDLARKGIEVEREARKIHIYDICILSI--DLPYVIFDVKCSKGTYIRSLCFDIGKD 180
Query: 491 LGSCAHLTALRRDSIGQYSADDAWEFKELEEAITKNYF 528
L A + L+R ++ +A + ++L E K Y
Sbjct: 181 LDCGAVMWNLQRLEASPFNIKEAIKLEDLNEENIKQYI 218
>gi|259507486|ref|ZP_05750386.1| tRNA pseudouridine synthase B [Corynebacterium efficiens YS-314]
gi|37088867|sp|Q8FPB3.2|TRUB_COREF RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|259164974|gb|EEW49528.1| tRNA pseudouridine synthase B [Corynebacterium efficiens YS-314]
Length = 297
Score = 174 bits (442), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 90/216 (41%), Positives = 127/216 (58%), Gaps = 8/216 (3%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G TS V KLRR +KVGHAGTLDPMATG+L+V + + T+ +
Sbjct: 10 LVVVDKPAGMTSHDVVSKLRRAFSTRKVGHAGTLDPMATGVLVVGIERGTRFLAHLVATT 69
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y RLG +T+T D + V+ + DE I A S GEI Q P SAIK+
Sbjct: 70 KAYDATIRLGASTTTDDREGDVVFSADASTLDDEQITTAVTSLTGEIMQKPASVSAIKID 129
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQ-----NLIFRVTCSKGTYIRSLCA 485
G++ +++ R GE +++ R +++ FD+ LE R+ +L RV CS GTYIRSL
Sbjct: 130 GKRAHERVRDGEVVDIPARPVTVSVFDV---LEQRREGGFVDLDVRVHCSSGTYIRSLAR 186
Query: 486 DFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
D G ALG HLTALRR +G ++ +DA +L++
Sbjct: 187 DLGAALGVGGHLTALRRTEVGPFTLEDAIPLADLQD 222
>gi|229031440|ref|ZP_04187440.1| tRNA pseudouridine synthase B [Bacillus cereus AH1271]
gi|228729729|gb|EEL80709.1| tRNA pseudouridine synthase B [Bacillus cereus AH1271]
Length = 307
Score = 174 bits (442), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 90/218 (41%), Positives = 141/218 (64%), Gaps = 5/218 (2%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+VL++KPKG TS KLR++++ K++GH GTLDP TG+L +CVG+ATK+V
Sbjct: 4 VVLLHKPKGMTSHDCVFKLRKILREKRIGHTGTLDPDVTGVLPICVGRATKIVQFLTSET 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V++ + + I +++ A A+ G I Q+PPMFSA+KV
Sbjct: 64 KTYEGEVTLGFSTTTEDASGEVVETKHVDRVITRKEVEGALAALTGTIEQMPPMFSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDI--ERSLEDRQNLI--FRVTCSKGTYIRSLCA 485
G+K+Y+ AR G+ +E R I+I +F + +R + + +N+ FRVTCSKGTY+R+L
Sbjct: 124 NGKKLYEYARAGQEVERPVRTITIHEFVLLDDREVFEGENISFRFRVTCSKGTYVRTLAV 183
Query: 486 DFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
G+ LG +H++ L R + G++ +D F+E+EE +
Sbjct: 184 MIGEKLGFPSHMSHLVRTASGEFLLEDCISFEEIEENV 221
>gi|163941547|ref|YP_001646431.1| tRNA pseudouridine synthase B [Bacillus weihenstephanensis KBAB4]
gi|229134617|ref|ZP_04263427.1| tRNA pseudouridine synthase B [Bacillus cereus BDRD-ST196]
gi|423452889|ref|ZP_17429742.1| tRNA pseudouridine synthase B [Bacillus cereus BAG5X1-1]
gi|423470024|ref|ZP_17446768.1| tRNA pseudouridine synthase B [Bacillus cereus BAG6O-2]
gi|423518500|ref|ZP_17494981.1| tRNA pseudouridine synthase B [Bacillus cereus HuA2-4]
gi|423612027|ref|ZP_17587888.1| tRNA pseudouridine synthase B [Bacillus cereus VD107]
gi|423669384|ref|ZP_17644413.1| tRNA pseudouridine synthase B [Bacillus cereus VDM034]
gi|423674437|ref|ZP_17649376.1| tRNA pseudouridine synthase B [Bacillus cereus VDM062]
gi|163863744|gb|ABY44803.1| tRNA pseudouridine synthase B [Bacillus weihenstephanensis KBAB4]
gi|228648878|gb|EEL04903.1| tRNA pseudouridine synthase B [Bacillus cereus BDRD-ST196]
gi|401139448|gb|EJQ47010.1| tRNA pseudouridine synthase B [Bacillus cereus BAG5X1-1]
gi|401160708|gb|EJQ68083.1| tRNA pseudouridine synthase B [Bacillus cereus HuA2-4]
gi|401247034|gb|EJR53378.1| tRNA pseudouridine synthase B [Bacillus cereus VD107]
gi|401298511|gb|EJS04111.1| tRNA pseudouridine synthase B [Bacillus cereus VDM034]
gi|401309988|gb|EJS15321.1| tRNA pseudouridine synthase B [Bacillus cereus VDM062]
gi|402437276|gb|EJV69300.1| tRNA pseudouridine synthase B [Bacillus cereus BAG6O-2]
Length = 307
Score = 174 bits (442), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 89/218 (40%), Positives = 139/218 (63%), Gaps = 5/218 (2%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+VL++KPKG TS KLR++++ K++GH GTLDP TG+L +CVG+ATK+
Sbjct: 4 VVLLHKPKGMTSHDCVFKLRKILREKRIGHTGTLDPDVTGVLPICVGRATKIAQFLTSET 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V++++ I +++ + A G I Q+PPMFSA+KV
Sbjct: 64 KTYEGEVTLGFSTTTEDASGEVVEKQDVNRVITRKEVEEVLAELTGTIEQMPPMFSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDI--ERSLEDRQNLI--FRVTCSKGTYIRSLCA 485
G+K+Y+ AR G+ +E R I+I +F + ER + + +N+ FRVTCSKGTY+R+L
Sbjct: 124 NGKKLYEYARAGQEVERPVRTITIHEFVLLDEREVFEGENISFRFRVTCSKGTYVRTLAV 183
Query: 486 DFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
G+ LG +H++ L R + G++ +D F+E+EE +
Sbjct: 184 MIGEKLGFPSHMSHLVRTASGEFLLEDCISFEEIEENV 221
>gi|288929543|ref|ZP_06423387.1| tRNA pseudouridine synthase B [Prevotella sp. oral taxon 317 str.
F0108]
gi|288329048|gb|EFC67635.1| tRNA pseudouridine synthase B [Prevotella sp. oral taxon 317 str.
F0108]
Length = 236
Score = 174 bits (442), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 89/219 (40%), Positives = 128/219 (58%), Gaps = 6/219 (2%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRL------VKVKKVGHAGTLDPMATGLLIVCVGKATKL 362
G ++ ++KP TSF ++R L VK K+GHAGTLDP+ATG+L++C GKATK
Sbjct: 6 GEIICIDKPYEITSFGALARVRYLLSRRLGVKRVKIGHAGTLDPLATGVLVLCTGKATKR 65
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
+ Q K Y +LG T ++D + PV + HI E I A F GEI QVPP
Sbjct: 66 IAELQAHTKEYVATLQLGATTPSYDMEHPVNETFETGHITREAIDNALQQFVGEIQQVPP 125
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRS 482
+SA+KV G++ YD R+G+ +EL+P+ + I + ++ + L RV C KGTYIR+
Sbjct: 126 TYSAVKVNGDRAYDLRRKGKDVELTPKTLRIDEIEVLNFDPSQMQLTIRVVCGKGTYIRA 185
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
L D G+AL S A+LTALRR +G ++ + +E
Sbjct: 186 LARDVGRALQSGAYLTALRRTRVGDVRVENCLQLDSFKE 224
>gi|407647264|ref|YP_006811023.1| tRNA pseudouridine synthase B [Nocardia brasiliensis ATCC 700358]
gi|407310148|gb|AFU04049.1| tRNA pseudouridine synthase B [Nocardia brasiliensis ATCC 700358]
Length = 301
Score = 174 bits (442), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 96/219 (43%), Positives = 133/219 (60%), Gaps = 4/219 (1%)
Query: 308 FGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQ 367
G +++V+K GWTS V K R+L+ KKVGHAGTLDPMATG+L++ V +ATKL+
Sbjct: 4 LGGLLIVDKDGGWTSHDVVAKCRKLLHTKKVGHAGTLDPMATGVLVLGVDRATKLLGLLT 63
Query: 368 GMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAI 427
K Y+ RLG+ATST DA+ V+ H+ D +I A G+I QVP SAI
Sbjct: 64 LTTKAYTATIRLGQATSTDDAEGEVLTTTSALHLADAEIDAHTAKLTGDIDQVPATVSAI 123
Query: 428 KVGGEKMYDKARRGESIELSPRRISIFQFDI----ERSLEDRQNLIFRVTCSKGTYIRSL 483
KV GE+ Y + R GE ++L+ R +++ +FDI + ++ + +L V CS GTYIR+L
Sbjct: 124 KVDGERAYARHRAGEDVQLAARPVTVSRFDILGRRDVAVGEFVDLDVVVECSSGTYIRAL 183
Query: 484 CADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEA 522
D G ALG HLTALRR +G ++ + A EL A
Sbjct: 184 ARDLGAALGVGGHLTALRRTRVGPFTLEHARTLDELAVA 222
>gi|229012993|ref|ZP_04170158.1| tRNA pseudouridine synthase B [Bacillus mycoides DSM 2048]
gi|229061413|ref|ZP_04198758.1| tRNA pseudouridine synthase B [Bacillus cereus AH603]
gi|229168549|ref|ZP_04296272.1| tRNA pseudouridine synthase B [Bacillus cereus AH621]
gi|423488985|ref|ZP_17465667.1| tRNA pseudouridine synthase B [Bacillus cereus BtB2-4]
gi|423494710|ref|ZP_17471354.1| tRNA pseudouridine synthase B [Bacillus cereus CER057]
gi|423498498|ref|ZP_17475115.1| tRNA pseudouridine synthase B [Bacillus cereus CER074]
gi|423592194|ref|ZP_17568225.1| tRNA pseudouridine synthase B [Bacillus cereus VD048]
gi|423598879|ref|ZP_17574879.1| tRNA pseudouridine synthase B [Bacillus cereus VD078]
gi|423661351|ref|ZP_17636520.1| tRNA pseudouridine synthase B [Bacillus cereus VDM022]
gi|228614955|gb|EEK72057.1| tRNA pseudouridine synthase B [Bacillus cereus AH621]
gi|228717836|gb|EEL69484.1| tRNA pseudouridine synthase B [Bacillus cereus AH603]
gi|228748247|gb|EEL98107.1| tRNA pseudouridine synthase B [Bacillus mycoides DSM 2048]
gi|401150803|gb|EJQ58255.1| tRNA pseudouridine synthase B [Bacillus cereus CER057]
gi|401160547|gb|EJQ67925.1| tRNA pseudouridine synthase B [Bacillus cereus CER074]
gi|401232327|gb|EJR38829.1| tRNA pseudouridine synthase B [Bacillus cereus VD048]
gi|401237149|gb|EJR43606.1| tRNA pseudouridine synthase B [Bacillus cereus VD078]
gi|401301392|gb|EJS06981.1| tRNA pseudouridine synthase B [Bacillus cereus VDM022]
gi|402432233|gb|EJV64292.1| tRNA pseudouridine synthase B [Bacillus cereus BtB2-4]
Length = 307
Score = 174 bits (442), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 89/218 (40%), Positives = 139/218 (63%), Gaps = 5/218 (2%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+VL++KPKG TS KLR++++ K++GH GTLDP TG+L +CVG+ATK+
Sbjct: 4 VVLLHKPKGMTSHDCVFKLRKILREKRIGHTGTLDPDVTGVLPICVGRATKIAQFLTSET 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V++++ I +++ + A G I Q+PPMFSA+KV
Sbjct: 64 KTYEGEVTLGFSTTTEDASGEVVEKQDVNRVITRKEVEEVLAELTGTIEQMPPMFSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDI--ERSLEDRQNLI--FRVTCSKGTYIRSLCA 485
G+K+Y+ AR G+ +E R I+I +F + ER + + +N+ FRVTCSKGTY+R+L
Sbjct: 124 NGKKLYEYARAGQEVERPVRTITIHEFVLLDEREVFEGENISFRFRVTCSKGTYVRTLAV 183
Query: 486 DFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
G+ LG +H++ L R + G++ +D F+E+EE +
Sbjct: 184 MIGEKLGFPSHMSHLVRTASGEFLLEDCISFEEIEENV 221
>gi|25028428|ref|NP_738482.1| tRNA pseudouridine synthase B [Corynebacterium efficiens YS-314]
gi|23493713|dbj|BAC18682.1| putative tRNA pseudouridine synthase B [Corynebacterium efficiens
YS-314]
Length = 327
Score = 174 bits (442), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 90/216 (41%), Positives = 127/216 (58%), Gaps = 8/216 (3%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G TS V KLRR +KVGHAGTLDPMATG+L+V + + T+ +
Sbjct: 40 LVVVDKPAGMTSHDVVSKLRRAFSTRKVGHAGTLDPMATGVLVVGIERGTRFLAHLVATT 99
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y RLG +T+T D + V+ + DE I A S GEI Q P SAIK+
Sbjct: 100 KAYDATIRLGASTTTDDREGDVVFSADASTLDDEQITTAVTSLTGEIMQKPASVSAIKID 159
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQ-----NLIFRVTCSKGTYIRSLCA 485
G++ +++ R GE +++ R +++ FD+ LE R+ +L RV CS GTYIRSL
Sbjct: 160 GKRAHERVRDGEVVDIPARPVTVSVFDV---LEQRREGGFVDLDVRVHCSSGTYIRSLAR 216
Query: 486 DFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
D G ALG HLTALRR +G ++ +DA +L++
Sbjct: 217 DLGAALGVGGHLTALRRTEVGPFTLEDAIPLADLQD 252
>gi|255693343|ref|ZP_05417018.1| tRNA pseudouridine synthase B [Bacteroides finegoldii DSM 17565]
gi|260620919|gb|EEX43790.1| tRNA pseudouridine synthase B [Bacteroides finegoldii DSM 17565]
Length = 240
Score = 174 bits (442), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 98/226 (43%), Positives = 134/226 (59%), Gaps = 8/226 (3%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR----RLVKVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G ++ NKP GWTSF V G R R + VKK VGHAGTLDP+ATG++IVC GKATK
Sbjct: 6 GEVLFFNKPLGWTSFKVVGHARYHICRRIGVKKLKVGHAGTLDPLATGVMIVCTGKATKR 65
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ +Q K Y RLG T ++D + + EHI E + + F G I QVPP
Sbjct: 66 IEEFQYHTKEYIATLRLGATTPSYDLEHEIDATYSTEHITREMVEEVLTHFIGTIEQVPP 125
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFD-IERSLEDRQNLI-FRVTCSKGTYI 480
FSA V G++ Y+ AR+GE +EL +++ I + + +E LE + +I RV CSKGTYI
Sbjct: 126 AFSACMVDGKRAYELARKGEEVELKAKQLVIDEIELLECCLETPEPMIRIRVVCSKGTYI 185
Query: 481 RSLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAITKN 526
R+L D G+AL S AHLT L R +G +D + + +E I +
Sbjct: 186 RALARDIGEALHSGAHLTGLIRTRVGDVRLEDCLDPEHFKEWIDRQ 231
>gi|224023491|ref|ZP_03641857.1| hypothetical protein BACCOPRO_00193 [Bacteroides coprophilus DSM
18228]
gi|224016713|gb|EEF74725.1| hypothetical protein BACCOPRO_00193 [Bacteroides coprophilus DSM
18228]
Length = 234
Score = 174 bits (441), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 91/219 (41%), Positives = 132/219 (60%), Gaps = 8/219 (3%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR----RLVKVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G ++ +KP WTSF V K+R R + VKK VGHAGTLDP+ATG++I+C GKATK
Sbjct: 6 GEVLYFDKPLRWTSFAVVNKIRYHISRKLGVKKIKVGHAGTLDPLATGVMIICTGKATKR 65
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ +Q K Y +LG T ++D + + P EHI E + + F+G I Q+PP
Sbjct: 66 IEEFQYHTKEYIATLQLGATTPSYDLEKEIDATYPTEHITREMVEEVLQQFKGTIEQIPP 125
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRS 482
FSA KV G++ YD AR+G+ +EL P+ + I + ++ + + RV CSKGTYIR+
Sbjct: 126 AFSACKVDGKRAYDLARKGDEVELKPKTLVIDEIELLEC--NLPEIKIRVVCSKGTYIRA 183
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
L D G+AL S AHLT L R +G+ +D + ++ E
Sbjct: 184 LARDIGEALQSGAHLTGLIRTRVGEVRLEDCMQVEDFPE 222
>gi|334336732|ref|YP_004541884.1| tRNA pseudouridine synthase B [Isoptericola variabilis 225]
gi|334107100|gb|AEG43990.1| tRNA pseudouridine synthase B [Isoptericola variabilis 225]
Length = 318
Score = 174 bits (441), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 106/237 (44%), Positives = 137/237 (57%), Gaps = 16/237 (6%)
Query: 296 RSTELPPT-WDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIV 354
RS E PP P G +V V+KP GWTS V G+ RRL +KVGHAGTLDPMATG+L+V
Sbjct: 2 RSDERPPRRATAPDGLLV-VDKPAGWTSHDVVGRCRRLAGTRKVGHAGTLDPMATGVLVV 60
Query: 355 CVGKATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQRE-PWEHIKDEDIRKAAASF 413
VG+AT+L+ G K Y RLG +T+T DA+ V+ + + D D+ +A A+
Sbjct: 61 GVGRATRLLTYVVGADKAYDATIRLGVSTTTDDAEGEVVAASGTGDGVDDADLARAVAAL 120
Query: 414 RGEIWQVPPMFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLI---- 469
GEI QVP SAIKV G + Y +AR GE +EL+ R +++ +FD+ LE R
Sbjct: 121 TGEIRQVPTTVSAIKVDGRRAYARARAGEEVELAARPVTVHRFDV---LEARAAATDDGV 177
Query: 470 ------FRVTCSKGTYIRSLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELE 520
V S GTY+R+L D G LG+ HLTALRR +G Y D A ELE
Sbjct: 178 PVLDVDVSVVVSSGTYVRALARDLGAVLGTGGHLTALRRTRVGGYGLDQARTLAELE 234
>gi|386740606|ref|YP_006213786.1| tRNA pseudouridine synthase B [Corynebacterium pseudotuberculosis
31]
gi|384477300|gb|AFH91096.1| tRNA pseudouridine synthase B [Corynebacterium pseudotuberculosis
31]
Length = 303
Score = 174 bits (441), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 94/219 (42%), Positives = 125/219 (57%), Gaps = 7/219 (3%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G TS V G+LRR+ K+VGHAGTLDPMATG+L+V + + TK +
Sbjct: 10 LVVVDKPAGMTSHDVVGRLRRIFGTKRVGHAGTLDPMATGVLVVGIERGTKFLAHMVAST 69
Query: 371 KGYSGVFRLGEATSTWDADSPVI---QREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAI 427
K Y RLG AT+T D + V+ I D DI +F G I Q P SAI
Sbjct: 70 KSYRATIRLGLATTTDDKEGEVVFSADASTLSAITDADIAAEITNFTGNIMQRPASVSAI 129
Query: 428 KVGGEKMYDKARRGESIELSPRRISIFQF---DIERSLE-DRQNLIFRVTCSKGTYIRSL 483
K+ G++ + R G+ +E+ PR ++I+ F DI RSL + ++ VTCS GTYIRSL
Sbjct: 130 KINGKRAHQMVREGQEVEIPPRPVTIYNFDVLDISRSLPLEFIDIEVEVTCSSGTYIRSL 189
Query: 484 CADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEA 522
D G AL HLTALRR S+G +S D +L A
Sbjct: 190 ARDLGSALNVGGHLTALRRLSVGPFSLSDTITLDDLTAA 228
>gi|304384873|ref|ZP_07367219.1| tRNA pseudouridine synthase B [Pediococcus acidilactici DSM 20284]
gi|304329067|gb|EFL96287.1| tRNA pseudouridine synthase B [Pediococcus acidilactici DSM 20284]
Length = 300
Score = 174 bits (441), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 91/218 (41%), Positives = 128/218 (58%), Gaps = 6/218 (2%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ +NK +G TS V K+R +++ KKVGH+GTLDP G+L VCVG+ATK+VD
Sbjct: 4 IIPINKERGMTSHDVVAKVRGILRTKKVGHSGTLDPSVDGVLPVCVGRATKVVDYLMRFG 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG AT+T D D V++R+P + D I A GE+ Q+PPM+SA+KV
Sbjct: 64 KTYQGSITLGLATTTEDLDGEVVERQPLSKPLTDAQIGAALKQMTGELTQIPPMYSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIERSLE-----DRQNLIFRVTCSKGTYIRSLC 484
G K+Y+ AR E++E R+I ++QF R E Q + F V C KGTY+R+L
Sbjct: 124 NGRKLYEYARAEETVERPKRKIQVYQFKQIRPTEFDEEKGEQTIYFEVQCGKGTYVRTLA 183
Query: 485 ADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEA 522
DFG+ G A ++ L R S G + + ELE+A
Sbjct: 184 VDFGRQFGLPAVMSDLTRTSSGGFELKECVTLAELEQA 221
>gi|310823417|ref|YP_003955775.1| tRNA pseudouridine synthase b [Stigmatella aurantiaca DW4/3-1]
gi|309396489|gb|ADO73948.1| tRNA pseudouridine synthase B [Stigmatella aurantiaca DW4/3-1]
Length = 289
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 90/209 (43%), Positives = 125/209 (59%), Gaps = 2/209 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++V+KP G TSF V ++R L+KVKKVGH GTLDPMATG+L +C+G+ATK+
Sbjct: 4 VLVVDKPSGPTSFDVVRQVRTLLKVKKVGHTGTLDPMATGVLPICLGEATKVAGFVTEGD 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y LG T T DA+ V+ P + + A A FRG QVPPMFSA+KV
Sbjct: 64 KAYEATVHLGVETDTQDAEGKVLAEAPVPPLTGALVESALAPFRGTFEQVPPMFSAVKVA 123
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKA 490
G+++Y+ AR GE +E + R++++++ + R L R CSKG ++R+L D G+A
Sbjct: 124 GKRLYELARAGEEVERAGRQVTVYELTLRDFSATRLRLSVR--CSKGFFVRTLAYDIGRA 181
Query: 491 LGSCAHLTALRRDSIGQYSADDAWEFKEL 519
LG AHL ALRR G + A EL
Sbjct: 182 LGCGAHLAALRRTVSGPFVLSQALPLAEL 210
>gi|54026023|ref|YP_120265.1| tRNA pseudouridine synthase B [Nocardia farcinica IFM 10152]
gi|62901242|sp|Q5YSE0.1|TRUB_NOCFA RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|54017531|dbj|BAD58901.1| putative tRNA pseudouridine synthase [Nocardia farcinica IFM 10152]
Length = 306
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 89/217 (41%), Positives = 132/217 (60%), Gaps = 2/217 (0%)
Query: 307 PFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRY 366
P G +++V+K G TS V + R+++ +K+GHAGTLDPMATG+L++ V +ATKL+
Sbjct: 13 PLGGLLVVDKDGGMTSHDVVARCRKILGTRKIGHAGTLDPMATGVLVLGVERATKLLGLL 72
Query: 367 QGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSA 426
K Y+ RLG AT+T DA+ V+ P H+ D ++ A+ G+I QVP SA
Sbjct: 73 TLTTKAYTATIRLGSATTTDDAEGEVLTTVPAGHLGDAEVAAGVAALTGDIQQVPATVSA 132
Query: 427 IKVGGEKMYDKARRGESIELSPRRISIFQFDI--ERSLEDRQNLIFRVTCSKGTYIRSLC 484
IK+GGE+ Y + R GE +EL+ R +++ +F++ R + +L V CS GTY+R+L
Sbjct: 133 IKIGGERAYARHRAGEQVELAARPVTVSRFEVLARRDVAGFVDLDVVVECSSGTYVRALA 192
Query: 485 ADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
D G ALG HLTALRR +G ++ D A L +
Sbjct: 193 RDLGAALGVGGHLTALRRTRVGPFTLDHARTLDALAD 229
>gi|423522360|ref|ZP_17498833.1| tRNA pseudouridine synthase B [Bacillus cereus HuA4-10]
gi|401175054|gb|EJQ82257.1| tRNA pseudouridine synthase B [Bacillus cereus HuA4-10]
Length = 307
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 89/218 (40%), Positives = 139/218 (63%), Gaps = 5/218 (2%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+VL++KPKG TS KLR++++ K++GH GTLDP TG+L +CVG+ATK+
Sbjct: 4 VVLLHKPKGMTSHDCVFKLRKILREKRIGHTGTLDPDVTGVLPICVGRATKIAQFLTSET 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V++++ I +++ + A G I Q+PPMFSA+KV
Sbjct: 64 KTYEGEVTLGFSTTTEDASGEVVEKQDVNRVITRKEVEEVLAELTGTIEQMPPMFSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDI--ERSLEDRQNLI--FRVTCSKGTYIRSLCA 485
G+K+Y+ AR G+ +E R I+I +F + ER + + +N+ FRVTCSKGTY+R+L
Sbjct: 124 NGKKLYEYARAGQEVERPVRTITIHEFVLLDEREVFEGENISFRFRVTCSKGTYVRTLAV 183
Query: 486 DFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
G+ LG +H++ L R + G++ +D F+E+EE +
Sbjct: 184 MIGEKLGFPSHMSHLVRTASGEFLLEDCISFEEIEENV 221
>gi|300858692|ref|YP_003783675.1| tRNA pseudouridine synthase B [Corynebacterium pseudotuberculosis
FRC41]
gi|375288875|ref|YP_005123416.1| tRNA pseudouridine synthase B [Corynebacterium pseudotuberculosis
3/99-5]
gi|383314454|ref|YP_005375309.1| tRNA pseudouridine synthase B [Corynebacterium pseudotuberculosis
P54B96]
gi|384504872|ref|YP_005681542.1| tRNA pseudouridine synthase B [Corynebacterium pseudotuberculosis
1002]
gi|384506968|ref|YP_005683637.1| tRNA pseudouridine synthase B [Corynebacterium pseudotuberculosis
C231]
gi|384509055|ref|YP_005685723.1| tRNA pseudouridine synthase B [Corynebacterium pseudotuberculosis
I19]
gi|385807754|ref|YP_005844151.1| tRNA pseudouridine synthase B [Corynebacterium pseudotuberculosis
267]
gi|387136796|ref|YP_005692776.1| tRNA pseudouridine synthase B [Corynebacterium pseudotuberculosis
42/02-A]
gi|300686146|gb|ADK29068.1| tRNA pseudouridine synthase B [Corynebacterium pseudotuberculosis
FRC41]
gi|302206402|gb|ADL10744.1| tRNA pseudouridine synthase B [Corynebacterium pseudotuberculosis
C231]
gi|302330958|gb|ADL21152.1| tRNA pseudouridine synthase B [Corynebacterium pseudotuberculosis
1002]
gi|308276645|gb|ADO26544.1| tRNA pseudouridine synthase B [Corynebacterium pseudotuberculosis
I19]
gi|348607241|gb|AEP70514.1| tRNA pseudouridine synthase B [Corynebacterium pseudotuberculosis
42/02-A]
gi|371576164|gb|AEX39767.1| tRNA pseudouridine synthase B [Corynebacterium pseudotuberculosis
3/99-5]
gi|380869955|gb|AFF22429.1| tRNA pseudouridine synthase B [Corynebacterium pseudotuberculosis
P54B96]
gi|383805147|gb|AFH52226.1| tRNA pseudouridine synthase B [Corynebacterium pseudotuberculosis
267]
Length = 303
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 94/219 (42%), Positives = 125/219 (57%), Gaps = 7/219 (3%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G TS V G+LRR+ K+VGHAGTLDPMATG+L+V + + TK +
Sbjct: 10 LVVVDKPAGMTSHDVVGRLRRIFGTKRVGHAGTLDPMATGVLVVGIERGTKFLAHMVAST 69
Query: 371 KGYSGVFRLGEATSTWDADSPVI---QREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAI 427
K Y RLG AT+T D + V+ I D DI +F G I Q P SAI
Sbjct: 70 KSYRATIRLGLATTTDDKEGEVVFSADASTLSAITDADIAAEITNFTGNIMQRPASVSAI 129
Query: 428 KVGGEKMYDKARRGESIELSPRRISIFQF---DIERSLE-DRQNLIFRVTCSKGTYIRSL 483
K+ G++ + R G+ +E+ PR ++I+ F DI RSL + ++ VTCS GTYIRSL
Sbjct: 130 KINGKRAHQMVREGQEVEIPPRPVTIYNFDVLDISRSLPLEFIDIEVEVTCSSGTYIRSL 189
Query: 484 CADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEA 522
D G AL HLTALRR S+G +S D +L A
Sbjct: 190 ARDLGSALNVGGHLTALRRLSVGPFSLSDTITLDDLTAA 228
>gi|390946908|ref|YP_006410668.1| tRNA pseudouridine 55 synthase [Alistipes finegoldii DSM 17242]
gi|390423477|gb|AFL77983.1| tRNA pseudouridine 55 synthase [Alistipes finegoldii DSM 17242]
Length = 238
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 102/227 (44%), Positives = 140/227 (61%), Gaps = 13/227 (5%)
Query: 309 GTMVLVNKPKGWTSFTVCGK----LRRLVKVK-KVGHAGTLDPMATGLLIVCVGKATKLV 363
G + +++KP WTS V K LRRL K KVGHAGTLDP+ATG+L+VC+G+ATK+V
Sbjct: 15 GYIAVLDKPLRWTSTDVVRKIKFTLRRLGYRKIKVGHAGTLDPLATGILLVCIGRATKMV 74
Query: 364 DRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPM 423
D Q K Y LG T ++D + PV + P EHI E + A +S GE Q PP+
Sbjct: 75 DALQAEEKEYVADVMLGATTPSYDLEHPVDRTFPTEHITREKVLAALSSLTGERLQEPPV 134
Query: 424 FSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLE-DRQNLIFRVTCSKGTYIRS 482
+SA K+ G + Y+ AR GE + + ++I++ ++ LE D + RV CSKGTYIRS
Sbjct: 135 YSAKKIDGTRAYELARAGEEVTMRKATVNIYELEL---LEYDLPRIRIRVRCSKGTYIRS 191
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKE----LEEAITK 525
L + G+AL S AHLT+LRR G ++ + A+EF+E LEE TK
Sbjct: 192 LAHEIGQALESGAHLTSLRRTRSGGFTLEKAFEFEEFLKKLEELETK 238
>gi|423511844|ref|ZP_17488375.1| tRNA pseudouridine synthase B [Bacillus cereus HuA2-1]
gi|402450105|gb|EJV81939.1| tRNA pseudouridine synthase B [Bacillus cereus HuA2-1]
Length = 307
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 89/218 (40%), Positives = 139/218 (63%), Gaps = 5/218 (2%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+VL++KPKG TS KLR++++ K++GH GTLDP TG+L +CVG+ATK+
Sbjct: 4 VVLLHKPKGMTSHDCVFKLRKILREKRIGHTGTLDPDVTGVLPICVGRATKIAQFLTSET 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V++++ I +++ + A G I Q+PPMFSA+KV
Sbjct: 64 KTYEGEVTLGFSTTTEDASGEVVEKQGVNRVITRKEVEEVLAELTGTIEQMPPMFSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDI--ERSLEDRQNLI--FRVTCSKGTYIRSLCA 485
G+K+Y+ AR G+ +E R I+I +F + ER + + +N+ FRVTCSKGTY+R+L
Sbjct: 124 NGKKLYEYARAGQEVERPVRTITIHEFVLLDEREVFEGENISFRFRVTCSKGTYVRTLAV 183
Query: 486 DFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
G+ LG +H++ L R + G++ +D F+E+EE +
Sbjct: 184 MIGEKLGFPSHMSHLVRTASGEFLLEDCISFEEIEENV 221
>gi|384511146|ref|YP_005690724.1| tRNA pseudouridine synthase B [Corynebacterium pseudotuberculosis
PAT10]
gi|341825085|gb|AEK92606.1| tRNA pseudouridine synthase B [Corynebacterium pseudotuberculosis
PAT10]
Length = 303
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 94/219 (42%), Positives = 125/219 (57%), Gaps = 7/219 (3%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G TS V G+LRR+ K+VGHAGTLDPMATG+L+V + + TK +
Sbjct: 10 LVVVDKPAGMTSHDVVGRLRRIFGTKRVGHAGTLDPMATGVLVVGIERGTKFLAHMVAST 69
Query: 371 KGYSGVFRLGEATSTWDADSPVI---QREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAI 427
K Y RLG AT+T D + V+ I D DI +F G I Q P SAI
Sbjct: 70 KSYRATIRLGLATTTDDKEGEVVFSADASTLSAITDADIAAEITNFTGNIMQRPASVSAI 129
Query: 428 KVGGEKMYDKARRGESIELSPRRISIFQF---DIERSLE-DRQNLIFRVTCSKGTYIRSL 483
K+ G++ + R G+ +E+ PR ++I+ F DI RSL + ++ VTCS GTYIRSL
Sbjct: 130 KINGKRAHQMVREGQEVEIPPRPVTIYNFDVLDISRSLPLEFIDIEVEVTCSSGTYIRSL 189
Query: 484 CADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEA 522
D G AL HLTALRR S+G +S D +L A
Sbjct: 190 ARDLGSALNVGGHLTALRRLSVGPFSLSDTITLDDLTAA 228
>gi|257055499|ref|YP_003133331.1| tRNA pseudouridine synthase B [Saccharomonospora viridis DSM 43017]
gi|256585371|gb|ACU96504.1| tRNA pseudouridine synthase B [Saccharomonospora viridis DSM 43017]
Length = 295
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 90/214 (42%), Positives = 126/214 (58%), Gaps = 2/214 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++V+KP G TS V K+RR ++ +KVGHAGTLDPMATG+L++ VG+ATKL+
Sbjct: 10 LLIVDKPGGMTSHDVVAKVRRFLRTRKVGHAGTLDPMATGVLVLGVGRATKLLGHLALDR 69
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y LG AT+T DA+ V ++D DI A+ G+I Q P SA+KV
Sbjct: 70 KAYLATIVLGAATTTDDAEGEVTSSADASGVRDSDIAAEIAALTGDILQKPSAVSAVKVD 129
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDI--ERSLEDRQNLIFRVTCSKGTYIRSLCADFG 488
G++ Y + R GE ++L R +++ +FD+ R R L V CS GTY+R+L D G
Sbjct: 130 GKRAYARVRAGEEVDLPARPVTVHRFDVLATRREGQRVELDVMVDCSSGTYVRALARDLG 189
Query: 489 KALGSCAHLTALRRDSIGQYSADDAWEFKELEEA 522
ALG HL ALRR S+G ++ A E+E A
Sbjct: 190 SALGVGGHLAALRRTSVGPFTLAQARTLDEVERA 223
>gi|402556069|ref|YP_006597340.1| tRNA pseudouridine synthase B [Bacillus cereus FRI-35]
gi|401797279|gb|AFQ11138.1| tRNA pseudouridine synthase B [Bacillus cereus FRI-35]
Length = 307
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 89/218 (40%), Positives = 140/218 (64%), Gaps = 5/218 (2%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+VL++KPKG TS KLR++++ K++GH GTLDP TG+L +CVG+ATK+
Sbjct: 4 VVLLHKPKGMTSHDCVFKLRKILREKRIGHTGTLDPDVTGVLPICVGRATKIAQFLTSET 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V++ + + I +++ + A+ G I Q+PPMFSA+KV
Sbjct: 64 KTYEGEVTLGFSTTTEDASGEVVETKHVDRVITRKEVEEVLAALTGTIEQMPPMFSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDI--ERSLEDRQNLI--FRVTCSKGTYIRSLCA 485
G+K+Y+ AR G+ +E R I+I +F + ER + + +N+ FRVTCSKGTY+R+L
Sbjct: 124 NGKKLYEYARAGQEVERPVRTITIHEFVLLDEREVFEGENISFRFRVTCSKGTYVRTLAV 183
Query: 486 DFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
G+ LG +H++ L R + G++ +D F+E+EE +
Sbjct: 184 MIGEKLGFPSHMSHLVRTASGEFVLEDCISFEEIEENV 221
>gi|138894786|ref|YP_001125239.1| tRNA pseudouridine synthase B [Geobacillus thermodenitrificans
NG80-2]
gi|196247590|ref|ZP_03146292.1| tRNA pseudouridine synthase B [Geobacillus sp. G11MC16]
gi|189036483|sp|A4IME0.1|TRUB_GEOTN RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|134266299|gb|ABO66494.1| tRNA pseudouridine 55 synthase [Geobacillus thermodenitrificans
NG80-2]
gi|196212374|gb|EDY07131.1| tRNA pseudouridine synthase B [Geobacillus sp. G11MC16]
Length = 302
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 90/218 (41%), Positives = 133/218 (61%), Gaps = 11/218 (5%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L+NKPKG TS K+RRL+ +KKVGH GTLDP +G+L +C+GKAT++ + G
Sbjct: 4 VLLLNKPKGMTSHDCVAKVRRLLGIKKVGHTGTLDPNVSGVLPICLGKATRIAEFLTGAT 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG ATST DAD +I + + I +I S G+I Q PPM+SA+KV
Sbjct: 64 KTYEGEVTLGAATSTEDADGDIIAVQTVDRTIARAEIEAVFRSLTGDIEQTPPMYSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLI-------FRVTCSKGTYIRS 482
G+K+Y+ AR G +E RR++I++ ++ L++R+ + FRV CSKGTY+R+
Sbjct: 124 NGKKLYEYARAGIEVERPTRRVTIYELEL---LDEREQFVGETVSFRFRVMCSKGTYVRT 180
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELE 520
L G+ LG AH++ L R + G + D +E+E
Sbjct: 181 LAVTIGERLGYPAHMSDLIRTASGPFQLADCVTLEEVE 218
>gi|153004011|ref|YP_001378336.1| tRNA pseudouridine synthase B [Anaeromyxobacter sp. Fw109-5]
gi|152027584|gb|ABS25352.1| tRNA pseudouridine synthase B [Anaeromyxobacter sp. Fw109-5]
Length = 315
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 90/221 (40%), Positives = 130/221 (58%), Gaps = 11/221 (4%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++V+KP G TSF V ++RR+++ + GHAGTLDP ATG+L +CVG A KL
Sbjct: 6 VLVVDKPAGPTSFDVVQRVRRILRAPRAGHAGTLDPAATGVLAICVGDAVKLQQYLSDAD 65
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y G AT T DA+ V++R + E++R FRG+I QVPPM+SA++VG
Sbjct: 66 KAYEATVAFGAATDTEDAEGRVVERGDPSRLTAEELRAVLPRFRGDISQVPPMYSAVRVG 125
Query: 431 GEKMYDKARRGESIELSPRRISI-----FQFDIERSLEDRQNLI------FRVTCSKGTY 479
G ++++ AR GES+E +PR++ + + +DR F V C KGTY
Sbjct: 126 GRRLHEAARAGESVERAPRQVRVDALELLELLPLEPPQDRVEAAPVRLARFTVRCGKGTY 185
Query: 480 IRSLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELE 520
+R+L AD G+ALG AHL ALRR + A++A +E E
Sbjct: 186 VRTLAADLGRALGVPAHLAALRRTEASGFRAEEAVTLEEAE 226
>gi|423300998|ref|ZP_17279022.1| tRNA pseudouridine synthase B [Bacteroides finegoldii CL09T03C10]
gi|408472333|gb|EKJ90861.1| tRNA pseudouridine synthase B [Bacteroides finegoldii CL09T03C10]
Length = 240
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 98/226 (43%), Positives = 134/226 (59%), Gaps = 8/226 (3%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR----RLVKVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G ++ NKP GWTSF V G R R + VKK VGHAGTLDP+ATG++IVC GKATK
Sbjct: 6 GEVLFFNKPLGWTSFKVVGHARYHICRRIGVKKLKVGHAGTLDPLATGVMIVCTGKATKR 65
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ +Q K Y RLG T ++D + + P HI E + + F G I QVPP
Sbjct: 66 IEEFQYHTKEYIATLRLGATTPSYDLEHEIDATYPTGHITREMVEEVLTHFIGMIEQVPP 125
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFD-IERSLEDRQNLI-FRVTCSKGTYI 480
FSA V G++ Y+ AR+GE +EL +++ I + + +E LE + +I RV CSKGTYI
Sbjct: 126 AFSACMVDGKRAYELARKGEEVELKAKQLVIDEIELLECCLETPEPMIRIRVVCSKGTYI 185
Query: 481 RSLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAITKN 526
R+L D G+AL S AHLT L R +G +D + + +E I +
Sbjct: 186 RALARDIGEALHSGAHLTGLIRTRVGDVRLEDCLDPEHFKEWIDRQ 231
>gi|345881093|ref|ZP_08832621.1| tRNA pseudouridine synthase B [Prevotella oulorum F0390]
gi|343920810|gb|EGV31538.1| tRNA pseudouridine synthase B [Prevotella oulorum F0390]
Length = 230
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 88/218 (40%), Positives = 132/218 (60%), Gaps = 7/218 (3%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLV------KVKKVGHAGTLDPMATGLLIVCVGKATKL 362
G + ++KP +SF +R ++ KVK +GHAGTLDP+ATG+LI+C GKATK
Sbjct: 6 GEIFAIDKPYRVSSFGALAHVRYVLSRALGYKVK-IGHAGTLDPLATGVLILCTGKATKR 64
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ +QG K Y +LG T+++D + V + HI I + A F G+I Q PP
Sbjct: 65 IEEFQGQTKEYVATLQLGATTASYDMEHEVSETFATAHITRALIDEKLAQFVGDILQTPP 124
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRS 482
+SA+KV GE+ YD R GES++L P+++ I Q ++ +R L RV C KGTYIR+
Sbjct: 125 SYSAVKVKGERAYDLRRSGESVQLKPKQVHIEQIEVLHFDAERMRLQLRVVCGKGTYIRA 184
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELE 520
L D G+AL S A+LT LRR +G ++ D +++ ++
Sbjct: 185 LARDLGRALQSGAYLTELRRTRVGAFTVDTCLDYENIQ 222
>gi|421452440|ref|ZP_15901801.1| tRNA pseudouridine synthase B [Streptococcus salivarius K12]
gi|400182871|gb|EJO17133.1| tRNA pseudouridine synthase B [Streptococcus salivarius K12]
Length = 293
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 86/216 (39%), Positives = 129/216 (59%), Gaps = 3/216 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ + K G TS KLR+++ KK+GH GTLDP TG+L + +GKAT++++
Sbjct: 5 IINLKKEAGMTSHDAVFKLRKILHEKKIGHGGTLDPDVTGVLPIAIGKATRVIEYMTEAG 64
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y G +G +T+T DA V+Q P + +E + A ASF GEI Q+PPM+SA+KV
Sbjct: 65 KVYEGEITIGFSTTTEDASGDVVQTTPVTELDEETVDMAMASFEGEITQIPPMYSAVKVN 124
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQN---LIFRVTCSKGTYIRSLCADF 487
G+K+Y+ AR GE +E R+++I +F +E N FRV CSKGTY+R+L D
Sbjct: 125 GKKLYEYARAGEEVERPQRQVTITEFVRTSPIELENNTAKFTFRVACSKGTYVRTLSVDL 184
Query: 488 GKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
G LG +H++ALRR + + D A ++ E +
Sbjct: 185 GAKLGYASHMSALRRTASAGLTLDKALTLSQISEMV 220
>gi|42782898|ref|NP_980145.1| tRNA pseudouridine synthase B [Bacillus cereus ATCC 10987]
gi|54036501|sp|Q732R2.1|TRUB_BACC1 RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|42738825|gb|AAS42753.1| tRNA pseudouridine synthase B [Bacillus cereus ATCC 10987]
Length = 307
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 89/218 (40%), Positives = 140/218 (64%), Gaps = 5/218 (2%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+VL++KPKG TS KLR++++ K++GH GTLDP TG+L +CVG+ATK+
Sbjct: 4 VVLLHKPKGMTSHDCIFKLRKILREKRIGHTGTLDPDVTGVLPICVGRATKIAQFLTSET 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V++ + + I +++ + A+ G I Q+PPMFSA+KV
Sbjct: 64 KTYEGEVTLGFSTTTEDASGEVVETKHVDRVITRKEVEEVLAALTGTIEQMPPMFSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDI--ERSLEDRQNLI--FRVTCSKGTYIRSLCA 485
G+K+Y+ AR G+ +E R I+I +F + ER + + +N+ FRVTCSKGTY+R+L
Sbjct: 124 NGKKLYEYARAGQEVERPVRTITIHEFVLLDEREVFEGENISFRFRVTCSKGTYVRTLAV 183
Query: 486 DFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
G+ LG +H++ L R + G++ +D F+E+EE +
Sbjct: 184 MIGEKLGFPSHMSHLVRTASGEFVLEDCISFEEIEENV 221
>gi|387138870|ref|YP_005694849.1| tRNA pseudouridine synthase B [Corynebacterium pseudotuberculosis
CIP 52.97]
gi|389850622|ref|YP_006352857.1| tRNA pseudouridine synthase B [Corynebacterium pseudotuberculosis
258]
gi|349735348|gb|AEQ06826.1| tRNA pseudouridine synthase B [Corynebacterium pseudotuberculosis
CIP 52.97]
gi|388247928|gb|AFK16919.1| tRNA pseudouridine synthase B [Corynebacterium pseudotuberculosis
258]
Length = 303
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 94/219 (42%), Positives = 125/219 (57%), Gaps = 7/219 (3%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G TS V G+LRR+ K+VGHAGTLDPMATG+L+V + + TK +
Sbjct: 10 LVVVDKPAGMTSHDVVGRLRRIFGTKRVGHAGTLDPMATGVLVVGIERGTKFLAHMVAST 69
Query: 371 KGYSGVFRLGEATSTWDADSPVI---QREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAI 427
K Y RLG AT+T D + V+ I D DI +F G I Q P SAI
Sbjct: 70 KSYRATIRLGLATTTDDKEGEVVFSADASTLSAITDADIAAEITNFTGNIMQRPASVSAI 129
Query: 428 KVGGEKMYDKARRGESIELSPRRISIFQF---DIERSLE-DRQNLIFRVTCSKGTYIRSL 483
K+ G++ + R G+ +E+ PR ++I+ F DI RSL + ++ VTCS GTYIRSL
Sbjct: 130 KINGKRAHQMVREGQEVEIPPRPVTIYNFDVLDISRSLPLEFIDIEVEVTCSSGTYIRSL 189
Query: 484 CADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEA 522
D G AL HLTALRR S+G +S D +L A
Sbjct: 190 ARDLGSALNVGGHLTALRRLSVGPFSLSDTITLDDLTAA 228
>gi|387784168|ref|YP_006070251.1| tRNA pseudouridine synthase B [Streptococcus salivarius JIM8777]
gi|338745050|emb|CCB95416.1| tRNA pseudouridine synthase B (tRNA pseudouridine 55 synthase)
(Psi55 synthase) (tRNA-uridine isomerase) (tRNA
pseudouridylate synthase) [Streptococcus salivarius
JIM8777]
Length = 280
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 85/207 (41%), Positives = 127/207 (61%), Gaps = 3/207 (1%)
Query: 320 WTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSGVFRL 379
TS KLR++++ KK+GH GTLDP TG+L + VGKAT++++ K Y G +
Sbjct: 1 MTSHDAVFKLRKILQEKKIGHGGTLDPDVTGVLPIAVGKATRVIEYMTEAGKVYEGEITI 60
Query: 380 GEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEKMYDKAR 439
G +T+T DA ++Q P + +E + KA ASF GEI Q+PPM+SA+KV G+K+Y+ AR
Sbjct: 61 GFSTTTEDAGGEIVQTTPVTELDEETVDKAMASFEGEITQIPPMYSAVKVNGKKLYEYAR 120
Query: 440 RGESIELSPRRISIFQFDIERSLE---DRQNLIFRVTCSKGTYIRSLCADFGKALGSCAH 496
GE +E R+++I +F +E D FRV CSKGTY+R+L D G LG +H
Sbjct: 121 AGEEVERPQRQVTITEFVRTSPIELENDTARFSFRVACSKGTYVRTLSVDLGAKLGYASH 180
Query: 497 LTALRRDSIGQYSADDAWEFKELEEAI 523
++ALRR + + D+A ++ E +
Sbjct: 181 MSALRRTASAGLTLDEALTLSQISEMV 207
>gi|218904937|ref|YP_002452771.1| tRNA pseudouridine synthase B [Bacillus cereus AH820]
gi|228916447|ref|ZP_04080013.1| tRNA pseudouridine synthase B [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|228928858|ref|ZP_04091890.1| tRNA pseudouridine synthase B [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228935124|ref|ZP_04097951.1| tRNA pseudouridine synthase B [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228947529|ref|ZP_04109819.1| tRNA pseudouridine synthase B [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|229123323|ref|ZP_04252527.1| tRNA pseudouridine synthase B [Bacillus cereus 95/8201]
gi|423550441|ref|ZP_17526768.1| tRNA pseudouridine synthase B [Bacillus cereus ISP3191]
gi|218534932|gb|ACK87330.1| tRNA pseudouridine synthase B [Bacillus cereus AH820]
gi|228660099|gb|EEL15735.1| tRNA pseudouridine synthase B [Bacillus cereus 95/8201]
gi|228812049|gb|EEM58380.1| tRNA pseudouridine synthase B [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|228824489|gb|EEM70294.1| tRNA pseudouridine synthase B [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228830665|gb|EEM76270.1| tRNA pseudouridine synthase B [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228843026|gb|EEM88108.1| tRNA pseudouridine synthase B [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|401190057|gb|EJQ97107.1| tRNA pseudouridine synthase B [Bacillus cereus ISP3191]
Length = 307
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 90/221 (40%), Positives = 140/221 (63%), Gaps = 11/221 (4%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+VL++KPKG TS KLR++++ K++GH GTLDP TG+L +CVG+ATK+
Sbjct: 4 VVLLHKPKGMTSHDCVFKLRKILREKRIGHTGTLDPDVTGVLPICVGRATKIAQFLTSET 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V++ + + I +++ +A A+ G I Q+PPMFSA+KV
Sbjct: 64 KTYEGEVTLGFSTTTEDASGEVVETKHVDRVITRKEVEEALATLTGTIEQMPPMFSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQ-------NLIFRVTCSKGTYIRS 482
G+K+Y+ AR G+ +E R I+I +F + L+DR+ + FRVTCSKGTY+R+
Sbjct: 124 NGKKLYEYARAGQEVERPVRTITIHEFVL---LDDREVFEGENISFRFRVTCSKGTYVRT 180
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
L G+ LG +H++ L R + G++ +D F+E+EE +
Sbjct: 181 LAVMIGEKLGFPSHMSHLVRTASGEFLLEDCISFEEIEENV 221
>gi|225164874|ref|ZP_03727095.1| tRNA pseudouridine synthase B [Diplosphaera colitermitum TAV2]
gi|224800523|gb|EEG18898.1| tRNA pseudouridine synthase B [Diplosphaera colitermitum TAV2]
Length = 242
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 89/211 (42%), Positives = 130/211 (61%), Gaps = 2/211 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L++KP TS V +LR ++++K++GHAGTLDPMATGLLIV VGKAT L
Sbjct: 11 VLLIDKPTDHTSHDVIARLRGILRMKRIGHAGTLDPMATGLLIVLVGKATSLSQYLMSAD 70
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K YSG LG+ T+T DA+ +++ P + + + A + G+ +Q+PPMFSAIK+
Sbjct: 71 KEYSGTITLGKTTNTQDAEGEMLETRPVPPLSEAQVAAAMRAMLGDQYQMPPMFSAIKID 130
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKA 490
G +Y AR+G+ IE PR I + QF++ R + + FR SKGTY+R+L D G
Sbjct: 131 GVPLYKSARKGQDIEREPRFIRVSQFELTRWQSPQID--FRSKVSKGTYVRTLAHDLGDK 188
Query: 491 LGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
LG HL+ALRR + G + D A + L++
Sbjct: 189 LGCGGHLSALRRTACGPLTIDRAVTIEALQK 219
>gi|283782788|ref|YP_003373542.1| tRNA pseudouridine synthase B [Gardnerella vaginalis 409-05]
gi|283441047|gb|ADB13513.1| tRNA pseudouridine synthase B [Gardnerella vaginalis 409-05]
Length = 367
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 94/235 (40%), Positives = 137/235 (58%), Gaps = 24/235 (10%)
Query: 307 PFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRY 366
P ++LV+KP+G TS + R L+ K+VGHAGTLDPMATGLLI+ G AT+L++
Sbjct: 4 PDSGLLLVDKPQGVTSHDIVACARHLLHTKRVGHAGTLDPMATGLLIIGFGNATRLLNYM 63
Query: 367 QGMIKGYSGVFRLGEATSTWDADSPVIQRE-----PWEHIKDEDI------------RKA 409
G K Y V RLGEAT+T DA+ ++ + P H+ ++D+ +
Sbjct: 64 LGHNKTYEAVIRLGEATTTDDAEGEILPDDALNIGPGVHVANKDMSFEKSLSFERIKQVV 123
Query: 410 AASFRGEIWQVPPMFSAIKVGGEKMYDKARRGESIELSPRRISIFQFD-----IERSLED 464
+ + G+I Q P FSAIK+ G++ YD AR G+S+E++PR I + F I R +
Sbjct: 124 SENLVGKIMQAPTAFSAIKINGQRAYDLAREGKSVEIAPREIFVSDFSVSNPRITRGVSG 183
Query: 465 RQ--NLIFRVTCSKGTYIRSLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFK 517
+ ++ +V+CS GTYIR+L D G+ LG HLT LRR S+G +S D+ K
Sbjct: 184 KLVCDISAKVSCSSGTYIRALARDLGRLLGVGGHLTQLRRTSVGDFSVTDSRVLK 238
>gi|218235132|ref|YP_002368611.1| tRNA pseudouridine synthase B [Bacillus cereus B4264]
gi|229152009|ref|ZP_04280204.1| tRNA pseudouridine synthase B [Bacillus cereus m1550]
gi|218163089|gb|ACK63081.1| tRNA pseudouridine synthase B [Bacillus cereus B4264]
gi|228631358|gb|EEK87992.1| tRNA pseudouridine synthase B [Bacillus cereus m1550]
Length = 307
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 91/221 (41%), Positives = 138/221 (62%), Gaps = 11/221 (4%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+VL++KPKG TS KLR++++ K++GH GTLDP TG+L +CVG+ATK+
Sbjct: 4 VVLLHKPKGMTSHDCVFKLRKILREKRIGHTGTLDPDVTGVLPICVGRATKIAQFLTSET 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V++ + + I ++ KA A G I Q+PPMFSA+KV
Sbjct: 64 KTYEGEVTLGFSTTTEDASGEVVETKNVDRTITRMEVEKALAELTGTIEQMPPMFSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQ-------NLIFRVTCSKGTYIRS 482
G+K+Y+ AR G+ +E R I+I +F + L+DR+ + FRVTCSKGTY+R+
Sbjct: 124 NGKKLYEYARAGQEVERPVRTITIHEFVL---LDDREVFEGENISFRFRVTCSKGTYVRT 180
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
L G+ LG +H++ L R + G++ +D F+E+EE +
Sbjct: 181 LAVMIGEKLGFPSHMSHLVRTASGEFLLEDCISFEEIEENV 221
>gi|375255468|ref|YP_005014635.1| tRNA pseudouridine synthase B [Tannerella forsythia ATCC 43037]
gi|363407130|gb|AEW20816.1| tRNA pseudouridine synthase B [Tannerella forsythia ATCC 43037]
Length = 239
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 100/219 (45%), Positives = 132/219 (60%), Gaps = 10/219 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLV----KVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G +V +KP WTSF + K R L+ KVKK VGHAGTLDP ATG+LIVC GKATK
Sbjct: 6 GEIVCFDKPLDWTSFDLVNKFRYLLSRRLKVKKIKVGHAGTLDPKATGVLIVCTGKATKR 65
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
+D +Q K Y +LG T ++D + + P HI E + + +F G I QVPP
Sbjct: 66 IDEFQYQTKEYVATLQLGATTPSFDLEKEIDCTYPTGHITRELVEQTLTTFVGTIRQVPP 125
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLI-FRVTCSKGTYIR 481
+FSA KVGG++ Y+ ARRGE + L + + I + ++ LE +I RV CSKGTYIR
Sbjct: 126 VFSACKVGGKRAYELARRGEEVALKAKTLVIDELEL---LEYALPVIKIRVVCSKGTYIR 182
Query: 482 SLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELE 520
+L D G AL S AHL AL+R IG+ + D +E+E
Sbjct: 183 ALARDIGIALRSGAHLIALQRTRIGEVTLDCCIRPEEME 221
>gi|421897233|ref|ZP_16327601.1| trna pseudouridine synthase b (trna pseudouridine 55synthase)
(psi55 synthase) (trna-uridine isomerase) (trna
pseudouridylate synthase) protein [Ralstonia
solanacearum MolK2]
gi|206588439|emb|CAQ35402.1| trna pseudouridine synthase b (trna pseudouridine 55synthase)
(psi55 synthase) (trna-uridine isomerase) (trna
pseudouridylate synthase) protein [Ralstonia
solanacearum MolK2]
Length = 314
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 96/214 (44%), Positives = 128/214 (59%), Gaps = 3/214 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L++KP GW+S + +RL+ KK GH GTLDP+ATGLL +C G+ATK
Sbjct: 20 VLLLDKPIGWSSNDALIRAKRLLWAKKAGHTGTLDPLATGLLPLCFGEATKFSQDLLEAD 79
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y V RLG TST DA+ V+ P + E +R A F GEI QVPPM SA+K
Sbjct: 80 KTYETVVRLGIKTSTADAEGEVLSERPVA-VTHEQLRAAVGRFIGEIDQVPPMHSALKKD 138
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQ--NLIFRVTCSKGTYIRSLCADFG 488
G+ +Y+ AR G+++E + RR++I DI + D + RV CSKGTYIR+L D G
Sbjct: 139 GKPLYEYARAGQTVERAARRVTIRAIDILATDLDAAAPTVTLRVCCSKGTYIRTLGEDLG 198
Query: 489 KALGSCAHLTALRRDSIGQYSADDAWEFKELEEA 522
+ALG AHL ALRR +G + D A + LE A
Sbjct: 199 EALGCGAHLVALRRTQVGSLTLDGAVTLQALEAA 232
>gi|255535080|ref|YP_003095451.1| tRNA pseudouridine synthase B [Flavobacteriaceae bacterium 3519-10]
gi|255341276|gb|ACU07389.1| tRNA pseudouridine synthase B [Flavobacteriaceae bacterium 3519-10]
Length = 233
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 95/213 (44%), Positives = 128/213 (60%), Gaps = 11/213 (5%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR-------RLVKVKKVGHAGTLDPMATGLLIVCVGKATK 361
G ++L++KP WTSF KL+ L K K+GHAGTLDP ATGLLIVC GK TK
Sbjct: 9 GQIILLDKPLDWTSFQAVNKLKYKLKREFNLPKKFKIGHAGTLDPRATGLLIVCTGKFTK 68
Query: 362 LVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVP 421
++ Q K Y ++G T ++D + P I + + HI I + SF GEI Q P
Sbjct: 69 IIPGIQDAPKEYQTEIKIGVQTESYDTEKPEILPQDFSHITSAQINEVLESFVGEIDQTP 128
Query: 422 PMFSAIKVGGEKMYDKARRGESIELSPRRISI-FQFDIERSLEDRQNLIFRVTCSKGTYI 480
P+FSAIK+ G + YD AR+G+ +E+ R+ ++ + ++E L + F V CSKGTYI
Sbjct: 129 PVFSAIKIDGSRAYDLARKGKDVEMKSRKTTVHYISEVEVELP---IIRFTVGCSKGTYI 185
Query: 481 RSLCADFGKALGSCAHLTALRRDSIGQYSADDA 513
RSL D G+ LG A+LT LRR IG+YS D A
Sbjct: 186 RSLAHDIGQDLGVGAYLTNLRRTKIGEYSIDSA 218
>gi|384181620|ref|YP_005567382.1| tRNA pseudouridine synthase B [Bacillus thuringiensis serovar
finitimus YBT-020]
gi|324327704|gb|ADY22964.1| tRNA pseudouridine synthase B [Bacillus thuringiensis serovar
finitimus YBT-020]
Length = 307
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 89/218 (40%), Positives = 140/218 (64%), Gaps = 5/218 (2%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+VL++KPKG TS KLR++++ K++GH GTLDP TG+L +CVG+ATK+
Sbjct: 4 VVLLHKPKGMTSHDCVFKLRKILREKRIGHTGTLDPDVTGVLPICVGRATKIAQFLTSET 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V++ + + I +++ + A+ G I Q+PPMFSA+KV
Sbjct: 64 KTYEGEVTLGFSTTTEDASGEVVETKHVDRVITRKEVEEVLAALTGTIEQMPPMFSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDI--ERSLEDRQNLI--FRVTCSKGTYIRSLCA 485
G+K+Y+ AR G+ +E R I+I +F + ER + + +N+ FRVTCSKGTY+R+L
Sbjct: 124 NGKKLYEYARAGQEVERPVRTITIHEFVLLDEREVFEGENISFRFRVTCSKGTYVRTLAV 183
Query: 486 DFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
G+ LG +H++ L R + G++ +D F+E+EE +
Sbjct: 184 MIGEKLGFPSHMSHLVRTASGEFLLEDCISFEEIEENV 221
>gi|220927913|ref|YP_002504822.1| tRNA pseudouridine synthase B [Clostridium cellulolyticum H10]
gi|219998241|gb|ACL74842.1| tRNA pseudouridine synthase B [Clostridium cellulolyticum H10]
Length = 309
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 90/222 (40%), Positives = 130/222 (58%), Gaps = 15/222 (6%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
V KP G TSF V G +R+L KK+GHAGTLDP A G+L +C+G ATK ++ K Y
Sbjct: 7 VLKPAGMTSFDVIGYMRKLTGQKKIGHAGTLDPSAVGVLPLCIGNATKALEFMINKDKVY 66
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEK 433
LG +T T D+ V+ + + + DI+K+ SF G I Q+PPM+SAIK+GG+K
Sbjct: 67 RAELTLGISTDTQDSSGTVLSFHSVD-VTENDIKKSIISFMGTIEQLPPMYSAIKIGGKK 125
Query: 434 MYDKARRGESIELSPRRISIFQFDIERSLEDRQ--------------NLIFRVTCSKGTY 479
+Y+ AR+G++IE R I I+ DI R +D + ++ + CSKGTY
Sbjct: 126 LYELARQGQTIERESRTIQIYNIDIIRIWDDSEVFESEGIPQEFAIKKVLLDIHCSKGTY 185
Query: 480 IRSLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
IR+LC D G+ LG H++ L R GQY D++ +E+ +
Sbjct: 186 IRTLCHDIGEKLGCGGHMSFLVRTRAGQYDLDNSLTIEEVAQ 227
>gi|387140860|ref|YP_005696838.1| tRNA pseudouridine synthase B [Corynebacterium pseudotuberculosis
1/06-A]
gi|355392651|gb|AER69316.1| tRNA pseudouridine synthase B [Corynebacterium pseudotuberculosis
1/06-A]
Length = 303
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 94/219 (42%), Positives = 125/219 (57%), Gaps = 7/219 (3%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G TS V G+LRR+ K+VGHAGTLDPMATG+L+V + + TK +
Sbjct: 10 LVVVDKPAGMTSHDVVGRLRRIFGTKRVGHAGTLDPMATGVLVVGIERGTKFLAHMVAST 69
Query: 371 KGYSGVFRLGEATSTWDADSPVI---QREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAI 427
K Y RLG AT+T D + V+ I D DI +F G I Q P SAI
Sbjct: 70 KSYRATIRLGLATTTDDKEGEVVFSADASTLSAITDADIAAEITNFTGNIMQRPASVSAI 129
Query: 428 KVGGEKMYDKARRGESIELSPRRISIFQF---DIERSLE-DRQNLIFRVTCSKGTYIRSL 483
K+ G++ + R G+ +E+ PR ++I+ F DI RSL + ++ VTCS GTYIRSL
Sbjct: 130 KINGKRAHQMVREGQEVEIPPRPVTIYNFDVLDISRSLPLEFIDIEVEVTCSSGTYIRSL 189
Query: 484 CADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEA 522
D G AL HLTALRR S+G +S D +L A
Sbjct: 190 ARDLGSALDVGGHLTALRRLSVGPFSLSDTITLDDLTAA 228
>gi|338998851|ref|ZP_08637512.1| tRNA pseudouridine synthase B [Halomonas sp. TD01]
gi|338764233|gb|EGP19204.1| tRNA pseudouridine synthase B [Halomonas sp. TD01]
Length = 306
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 91/214 (42%), Positives = 127/214 (59%), Gaps = 2/214 (0%)
Query: 307 PFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRY 366
P ++L++KPKG +S ++RRL + +K GH GTLDPMATGLL +C+G+ATK
Sbjct: 9 PVNGVLLLDKPKGISSNHALQRVRRLFEAQKAGHTGTLDPMATGLLPICLGEATKFSAHL 68
Query: 367 QGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSA 426
K Y LG T T DA+ VI+R + ED+ A F GEI QVPPM+SA
Sbjct: 69 LEADKMYRTRVELGVITDTGDAEGTVIERREIPSLTAEDVESVLARFHGEIDQVPPMYSA 128
Query: 427 IKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCAD 486
+K G+K+Y+ AR G+ +E + RR+S+ +D + V+CSKGTYIR+L D
Sbjct: 129 LKHQGKKLYELAREGKHVERAARRVSV--YDARLLAFEGTAFELEVSCSKGTYIRTLAED 186
Query: 487 FGKALGSCAHLTALRRDSIGQYSADDAWEFKELE 520
G ALG AH++ LRR G ++ D W ++LE
Sbjct: 187 IGHALGCGAHISQLRRLKTGPFTGDAMWTLEDLE 220
>gi|50954471|ref|YP_061759.1| tRNA pseudouridine synthase B [Leifsonia xyli subsp. xyli str.
CTCB07]
gi|54036455|sp|Q6AG41.1|TRUB_LEIXX RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|50950953|gb|AAT88654.1| tRNA pseudouridine synthase B [Leifsonia xyli subsp. xyli str.
CTCB07]
Length = 302
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 93/217 (42%), Positives = 127/217 (58%), Gaps = 5/217 (2%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L++KP GWTS V ++RRL +KVGHAGTLDPMATGLL++ + +T+L+ G
Sbjct: 8 LLLIDKPGGWTSHDVVARVRRLAGTRKVGHAGTLDPMATGLLVLGLNSSTRLLTYIVGAE 67
Query: 371 KGYSGVFRLGEATSTWDADSPVIQR---EPWEHIKDEDIRKAAASFRGEIWQVPPMFSAI 427
K Y G RLG AT+T D + +++R + + I + A+ GEI QVP SA+
Sbjct: 68 KEYVGTIRLGAATTTDDIEGEILERAEPAALAAVAESSIAEGIAALTGEIEQVPSAVSAV 127
Query: 428 KVGGEKMYDKARRGESIELSPRRISIFQFDI--ERSLEDRQNLIFRVTCSKGTYIRSLCA 485
KV G++ Y + R GE + L R +++ F + ER +D +L RV CS GTYIRSL
Sbjct: 128 KVDGKRAYARVRAGEEVVLPARAVTVSAFRLLSERREQDAIDLEVRVVCSSGTYIRSLAR 187
Query: 486 DFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEA 522
D G LG HL ALRR +G Y A E LE A
Sbjct: 188 DLGARLGVGGHLAALRRTRVGGYDVRRAHELATLEPA 224
>gi|352104779|ref|ZP_08960532.1| tRNA pseudouridine synthase B [Halomonas sp. HAL1]
gi|350598701|gb|EHA14811.1| tRNA pseudouridine synthase B [Halomonas sp. HAL1]
Length = 306
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 91/214 (42%), Positives = 129/214 (60%), Gaps = 2/214 (0%)
Query: 307 PFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRY 366
P ++L++KPKG +S ++RRL + +K GH GTLDPMATGLL +C+G+ATK
Sbjct: 9 PVNGVLLLDKPKGVSSNHALQRVRRLFQAQKAGHTGTLDPMATGLLPICLGEATKFSSHL 68
Query: 367 QGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSA 426
K Y LG T T DA+ V+++ + +D++ FRGEI QVPPM+SA
Sbjct: 69 LEADKVYRTRVELGVITDTGDAEGSVMEQHEVPSLSVDDVKAVLTRFRGEIDQVPPMYSA 128
Query: 427 IKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCAD 486
+K G+K+Y+ AR G+ +E + RRIS+ +D D V+CSKGTYIR+L D
Sbjct: 129 LKHQGKKLYELAREGKHVERAARRISV--YDARLLSFDGTAFELEVSCSKGTYIRTLAED 186
Query: 487 FGKALGSCAHLTALRRDSIGQYSADDAWEFKELE 520
G+ALG AH++ LRR + G + AD W + LE
Sbjct: 187 IGQALGCGAHISQLRRLTTGPFLADAMWTLEALE 220
>gi|359420895|ref|ZP_09212826.1| tRNA pseudouridine synthase B [Gordonia araii NBRC 100433]
gi|358243168|dbj|GAB10895.1| tRNA pseudouridine synthase B [Gordonia araii NBRC 100433]
Length = 300
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 91/212 (42%), Positives = 131/212 (61%), Gaps = 2/212 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G TS V K R+ ++VGHAGTLDPMATG+L+V + +ATKL+
Sbjct: 12 LVVVDKPAGITSHDVVSKCRKAFNTRRVGHAGTLDPMATGVLVVGIERATKLLGLLSLTT 71
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y+ RLG AT+T DA+ +I++ P + D++I A G+I QVP SAIKV
Sbjct: 72 KSYTATIRLGAATTTDDAEGEIIRQVPAGGVGDDEIAAAIGKLTGDIEQVPATVSAIKVD 131
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDI--ERSLEDRQNLIFRVTCSKGTYIRSLCADFG 488
G + +D+AR GE EL+ R +++ +FD+ R +D +L V CS GTY+R+L D G
Sbjct: 132 GRRAHDRAREGEEFELAARAVTVSRFDVTATRRGDDVIDLDVDVDCSSGTYVRALARDLG 191
Query: 489 KALGSCAHLTALRRDSIGQYSADDAWEFKELE 520
ALG HLT+LRR ++G ++ A +LE
Sbjct: 192 AALGVGGHLTSLRRTAVGPFTLAHARPLADLE 223
>gi|359787083|ref|ZP_09290152.1| tRNA pseudouridine synthase B [Halomonas sp. GFAJ-1]
gi|359295620|gb|EHK59884.1| tRNA pseudouridine synthase B [Halomonas sp. GFAJ-1]
Length = 307
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 93/216 (43%), Positives = 132/216 (61%), Gaps = 5/216 (2%)
Query: 307 PFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRY 366
P ++L++KPKG +S ++RRL + +K GH GTLDPMATGLL +C+G+ATK
Sbjct: 9 PVNGVLLLDKPKGISSNHALQRVRRLFEAQKAGHTGTLDPMATGLLPICLGEATKFSAHL 68
Query: 367 QGMIKGYSGVFRLGEATSTWDADSPVIQ-REPWEHIKDEDIRKAAASFRGEIWQVPPMFS 425
K Y LG T T DA+ VI+ RE + ++D+ FRGEI QVPPM+S
Sbjct: 69 LEADKMYRTRVELGVITDTGDAEGTVIERREVPSRLTEQDVEAVLTRFRGEIEQVPPMYS 128
Query: 426 AIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLE-DRQNLIFRVTCSKGTYIRSLC 484
A+K G+K+Y+ AR G+ +E + RR+S++ R LE + V+CSKGTYIR+L
Sbjct: 129 ALKHQGKKLYELAREGKHVERAARRVSVYD---ARLLEFEGTAFELEVSCSKGTYIRTLA 185
Query: 485 ADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELE 520
D G+ALG AH++ LRR G +++D W + LE
Sbjct: 186 EDIGQALGCGAHISQLRRLKTGPFTSDAMWTLESLE 221
>gi|262341125|ref|YP_003283980.1| tRNA-pseudouridine synthase I [Blattabacterium sp. (Blattella
germanica) str. Bge]
gi|262272462|gb|ACY40370.1| tRNA-pseudouridine synthase I [Blattabacterium sp. (Blattella
germanica) str. Bge]
Length = 237
Score = 174 bits (440), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 92/212 (43%), Positives = 130/212 (61%), Gaps = 10/212 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVK-------KVGHAGTLDPMATGLLIVCVGKATK 361
G ++L++KP GWTSF + K++ + K+GHAGTLDP+ATGLLI+ GK TK
Sbjct: 11 GKILLIDKPWGWTSFEIVKKIKSFILTTIPKKGNLKIGHAGTLDPLATGLLIILTGKYTK 70
Query: 362 LVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVP 421
VD Q K Y+G+ +LG T ++D+++ HI + IRK + F GEI Q P
Sbjct: 71 KVDDIQNYKKTYTGIIKLGCETLSFDSETEEYNFSSISHITPQLIRKTSQKFVGEIDQYP 130
Query: 422 PMFSAIKVGGEKMYDKARRGESI-ELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYI 480
P FSA+K G++ Y+ AR+GE I + RR+ I+QF I + + F + C KGTYI
Sbjct: 131 PSFSALKTKGKRFYEYARKGEKINSMKSRRVKIYQFHILKI--GIPYIKFFIECGKGTYI 188
Query: 481 RSLCADFGKALGSCAHLTALRRDSIGQYSADD 512
RS+ DFGKAL S +L +LRR+ IG +S +D
Sbjct: 189 RSVAQDFGKALKSGGYLLSLRRERIGNFSIND 220
>gi|429767502|ref|ZP_19299699.1| tRNA pseudouridine synthase B [Clostridium celatum DSM 1785]
gi|429180912|gb|EKY22113.1| tRNA pseudouridine synthase B [Clostridium celatum DSM 1785]
Length = 292
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 88/204 (43%), Positives = 127/204 (62%), Gaps = 2/204 (0%)
Query: 316 KPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSG 375
KP G TSF V ++++ KVGH GTLDP A+G+L VCVG+ATK++D K Y
Sbjct: 9 KPTGMTSFDVVRIVKKVCNTGKVGHTGTLDPEASGVLPVCVGRATKIIDYIMDSKKVYEV 68
Query: 376 VFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEKMY 435
VF+LG T+T+D + V++ E +KDEDI K SF+G+ Q+PPM+SA+K G ++Y
Sbjct: 69 VFKLGIRTTTYDLEGEVLEERNTESLKDEDILKVVNSFKGQYSQIPPMYSALKQNGVRLY 128
Query: 436 DKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKALGSCA 495
+ AR+G +E R I+I ++IE + + +VTCSKGTYIRSLC D G+ LG A
Sbjct: 129 ELARKGIEVEREGRLITI--YNIEDIKVNNPYVSMKVTCSKGTYIRSLCYDIGEKLGVFA 186
Query: 496 HLTALRRDSIGQYSADDAWEFKEL 519
+T L R + ++ + A +L
Sbjct: 187 TMTELNRSATSVFNQEQAININDL 210
>gi|326333606|ref|ZP_08199845.1| tRNA pseudouridine synthase B [Nocardioidaceae bacterium Broad-1]
gi|325948622|gb|EGD40723.1| tRNA pseudouridine synthase B [Nocardioidaceae bacterium Broad-1]
Length = 289
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 90/213 (42%), Positives = 129/213 (60%), Gaps = 2/213 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G TS V ++RRL +KVGHAGTLDPMATG+L++ V +AT+L+
Sbjct: 6 LVIVDKPAGVTSHDVVARVRRLAGTRKVGHAGTLDPMATGVLVLGVERATRLLGHLMLTE 65
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K YS RLG +T+T DA+ V++ + +E +R A A+ G+I QVP + SAIKV
Sbjct: 66 KAYSATVRLGVSTTTDDAEGEVVETRSAADLDEERVRSAFAAQVGDILQVPTVVSAIKVD 125
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIE--RSLEDRQNLIFRVTCSKGTYIRSLCADFG 488
G++ Y + R GE +EL R +++ + + R D ++ V CS GTYIR++ D G
Sbjct: 126 GKRAYQRVRDGEQVELKARPVTVHELTVGELRREGDVVDVDISVRCSSGTYIRAIARDVG 185
Query: 489 KALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
+ALG HLT LRR ++G Y A EL E
Sbjct: 186 EALGVGGHLTMLRRTAVGPYDLGGARTLDELAE 218
>gi|225021174|ref|ZP_03710366.1| hypothetical protein CORMATOL_01186 [Corynebacterium matruchotii
ATCC 33806]
gi|224946081|gb|EEG27290.1| hypothetical protein CORMATOL_01186 [Corynebacterium matruchotii
ATCC 33806]
Length = 302
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 91/221 (41%), Positives = 125/221 (56%), Gaps = 10/221 (4%)
Query: 307 PFGT--MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVD 364
P T +V+V+KP G TS V G+LRR+ ++VGHAGTLDP+ATG+LIV + + TK +
Sbjct: 8 PLATSGLVVVDKPAGMTSHDVIGRLRRIFHTRRVGHAGTLDPLATGVLIVGINRGTKFLT 67
Query: 365 RYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMF 424
K Y RLG AT+T DA+ I R H+ D+DI A + F G I Q P
Sbjct: 68 HLVAATKSYQATIRLGMATTTDDAEGAEISRADTTHLTDDDIAAALSQFIGRIMQRPAAV 127
Query: 425 SAIKVGGEKMYDKARRGESIELSPRRISIFQ-----FDIERSLEDRQNLIFRVTCSKGTY 479
SAIK+ G++ +++ R GESI + R ++I Q FD D V CS GTY
Sbjct: 128 SAIKIDGKRAHERVRAGESITIPVREVTISQLTPTGFDHHDGFIDMN---ITVDCSSGTY 184
Query: 480 IRSLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELE 520
IRS+ D G+ L H+TALRR ++G ++ D +LE
Sbjct: 185 IRSIARDLGEVLHVGGHITALRRTAVGNFTLADTRTLTQLE 225
>gi|379715571|ref|YP_005303908.1| tRNA pseudouridine synthase B [Corynebacterium pseudotuberculosis
316]
gi|377654277|gb|AFB72626.1| tRNA pseudouridine synthase B [Corynebacterium pseudotuberculosis
316]
Length = 302
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 94/219 (42%), Positives = 125/219 (57%), Gaps = 7/219 (3%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G TS V G+LRR+ K+VGHAGTLDPMATG+L+V + + TK +
Sbjct: 10 LVVVDKPAGMTSHDVVGRLRRIFGTKRVGHAGTLDPMATGVLVVGIERGTKFLAHMVAST 69
Query: 371 KGYSGVFRLGEATSTWDADSPVI---QREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAI 427
K Y RLG AT+T D + V+ I D DI +F G I Q P SAI
Sbjct: 70 KSYRATIRLGLATTTDDKEGEVVFSADASTLSAITDADIAAEITNFTGNIMQRPASVSAI 129
Query: 428 KVGGEKMYDKARRGESIELSPRRISIFQF---DIERSLE-DRQNLIFRVTCSKGTYIRSL 483
K+ G++ + R G+ +E+ PR ++I+ F DI RSL + ++ VTCS GTYIRSL
Sbjct: 130 KINGKRAHQMVREGQEVEIPPRPVTIYNFDVLDISRSLPLEFIDIEVEVTCSSGTYIRSL 189
Query: 484 CADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEA 522
D G AL HLTALRR S+G +S D +L A
Sbjct: 190 ARDLGSALDVGGHLTALRRLSVGPFSLSDTITLDDLTAA 228
>gi|154497688|ref|ZP_02036066.1| hypothetical protein BACCAP_01664 [Bacteroides capillosus ATCC
29799]
gi|150273186|gb|EDN00331.1| tRNA pseudouridine synthase B [Pseudoflavonifractor capillosus ATCC
29799]
Length = 289
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 88/212 (41%), Positives = 130/212 (61%), Gaps = 2/212 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++++KP GWTS VC K+R ++ ++VGHAGTLDPMATG+L V VG+AT+ V+
Sbjct: 5 IIVIDKPAGWTSMDVCAKIRGVLHERRVGHAGTLDPMATGVLPVFVGRATRAVEFAAEGG 64
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y RLG T+T D V++ +P + + A A FRG+I Q+PPM+SAIK
Sbjct: 65 KEYVAGLRLGVVTNTQDTSGTVLEEKPVS-VDRAALEAALAPFRGDILQIPPMYSAIKRD 123
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKA 490
G+K+Y+ AR+G+ +E PR ++I+ ++ + + RV CSKGTY+R+LC D G+A
Sbjct: 124 GKKLYELARKGQEVEREPRPVTIYGLEVVDQ-TGPADYLLRVQCSKGTYVRTLCHDIGQA 182
Query: 491 LGSCAHLTALRRDSIGQYSADDAWEFKELEEA 522
LG + +LRR +S D A L A
Sbjct: 183 LGCGGCMYSLRRTEAAGFSLDQAVTLDALLSA 214
>gi|357061057|ref|ZP_09121818.1| tRNA pseudouridine synthase B [Alloprevotella rava F0323]
gi|355375282|gb|EHG22570.1| tRNA pseudouridine synthase B [Alloprevotella rava F0323]
Length = 261
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 90/219 (41%), Positives = 132/219 (60%), Gaps = 9/219 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVK------KVGHAGTLDPMATGLLIVCVGKATKL 362
G ++ +KP TSF+ G LR L+ + +VGHAGTLDP+ATG LI+C G+AT++
Sbjct: 6 GKILAFDKPYRATSFSEVGHLRWLLTKRMTGCKIRVGHAGTLDPLATGTLIICTGRATRI 65
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ Q K Y RLGE T+++D + PV Q P EHI + +R+ S G+I Q+PP
Sbjct: 66 IESLQTHTKEYIAEVRLGETTASYDLEHPVDQTYPTEHITEAMVREVLHSLEGDIMQIPP 125
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFD-IERSLEDRQNLIFRVTCSKGTYIR 481
+SA K+ G++ Y AR GE + L + + + + + +E L D L RV C KGTYIR
Sbjct: 126 AYSACKINGDRAYQLARNGEEVPLKAKPVRVEEIELLEMRLPD--YLKIRVVCGKGTYIR 183
Query: 482 SLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELE 520
S+ D G+ LGS AHL +LRR +G +D W+ ++ E
Sbjct: 184 SIGRDIGERLGSGAHLLSLRRTRVGDIRVEDCWKMEDFE 222
>gi|422854032|ref|ZP_16900696.1| tRNA pseudouridine synthase B [Streptococcus sanguinis SK160]
gi|325696837|gb|EGD38725.1| tRNA pseudouridine synthase B [Streptococcus sanguinis SK160]
Length = 292
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 96/224 (42%), Positives = 134/224 (59%), Gaps = 8/224 (3%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ + K G TS KLR+++K KK+GH GTLDP G+L + VGKAT+LV+ Q
Sbjct: 4 IINLKKEAGMTSHDAVFKLRKILKTKKIGHGGTLDPDVVGVLPIAVGKATRLVEFMQEEG 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDED-IRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA +++R P + +E I +A S GEI Q+PPM+SA+KV
Sbjct: 64 KVYEGEITLGCSTTTEDASGDILERTPVTELLEEALIDEAMESMTGEIHQIPPMYSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIER----SLEDRQ-NLIFRVTCSKGTYIRSLC 484
G K+Y+ AR G+ +E R+++I+ F ER S ED Q FRV CSKGTY+R+L
Sbjct: 124 NGRKLYEYARAGQEVERPERQVTIYSF--ERTSPISYEDEQARFRFRVKCSKGTYVRTLS 181
Query: 485 ADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAITKNYF 528
D G LG +H++ L R S S DDA E+ E +T + F
Sbjct: 182 VDLGAKLGFASHMSQLTRTSSAGMSLDDALTLDEIAERVTVDDF 225
>gi|218290091|ref|ZP_03494253.1| tRNA pseudouridine synthase B [Alicyclobacillus acidocaldarius
LAA1]
gi|218239800|gb|EED06989.1| tRNA pseudouridine synthase B [Alicyclobacillus acidocaldarius
LAA1]
Length = 302
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 87/210 (41%), Positives = 130/210 (61%), Gaps = 2/210 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L++KP+G TS V ++RR + V++VGHAGTLDPMATGLL++CVG+ T+L++
Sbjct: 7 VLLIDKPQGMTSHDVVNRVRRKLGVRRVGHAGTLDPMATGLLMICVGRVTRLLEYLGQGD 66
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K YSG G T T DA+ V+ + P + +R+AA GEI Q PP +SA+ +
Sbjct: 67 KEYSGTVVFGVGTDTDDAEGTVVAQAPATGLDLAAVRQAALRLTGEIRQRPPQYSAVHID 126
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLI--FRVTCSKGTYIRSLCADFG 488
G + YD AR+G+ +EL R + + F ++ + + + FRV CSKGTY+R+LC D G
Sbjct: 127 GRRAYDLARQGKQVELPERTVQVQAFTLDEFRHEGEVAVARFRVRCSKGTYVRALCRDLG 186
Query: 489 KALGSCAHLTALRRDSIGQYSADDAWEFKE 518
LG AH+ +LRR +IG +DA +
Sbjct: 187 ALLGVPAHMRSLRRLAIGCARVEDAISLDD 216
>gi|218898962|ref|YP_002447373.1| tRNA pseudouridine synthase B [Bacillus cereus G9842]
gi|423561784|ref|ZP_17538060.1| tRNA pseudouridine synthase B [Bacillus cereus MSX-A1]
gi|218545088|gb|ACK97482.1| tRNA pseudouridine synthase B [Bacillus cereus G9842]
gi|401202041|gb|EJR08906.1| tRNA pseudouridine synthase B [Bacillus cereus MSX-A1]
Length = 307
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 91/221 (41%), Positives = 138/221 (62%), Gaps = 11/221 (4%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+VL++KPKG TS KLR++++ K++GH GTLDP TG+L +CVG+ATK+
Sbjct: 4 VVLLHKPKGMTSHDCVFKLRKVLREKRIGHTGTLDPDVTGVLPICVGRATKIAQFLTSET 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V++ + + I ++I K A G I Q+PPMFSA+KV
Sbjct: 64 KTYEGEVTLGFSTTTEDASGEVVETKNIDRAITRKEIEKVLAELTGTIEQMPPMFSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQ-------NLIFRVTCSKGTYIRS 482
G+K+Y+ AR G+ +E R I+I +F + L+DR+ + FRVTCSKGTY+R+
Sbjct: 124 NGKKLYEYARAGQEVERPVRTITIHEFVL---LDDREVFEGENISFRFRVTCSKGTYVRT 180
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
L G+ LG +H++ L R + G++ +D F+E+EE +
Sbjct: 181 LAVMIGEKLGFPSHMSHLVRTASGEFLLEDCISFEEIEENV 221
>gi|421050117|ref|ZP_15513111.1| tRNA pseudouridine synthase B [Mycobacterium massiliense CCUG 48898
= JCM 15300]
gi|392238720|gb|EIV64213.1| tRNA pseudouridine synthase B [Mycobacterium massiliense CCUG
48898]
Length = 280
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 90/208 (43%), Positives = 122/208 (58%), Gaps = 3/208 (1%)
Query: 320 WTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSGVFRL 379
TS V + RR+ +KVGHAGTLDPMATG+L++ + +ATK++ K Y+ R
Sbjct: 1 MTSHDVVSRCRRIFSTRKVGHAGTLDPMATGVLVIGIERATKIMGLLTLTTKSYAATIRF 60
Query: 380 GEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEKMYDKAR 439
G++TST DA+ V+Q H+ + DI A A RG+I QVP SAIKV G++ Y AR
Sbjct: 61 GQSTSTDDAEGEVLQTISASHLTEVDIEAAVAGLRGDIAQVPSSVSAIKVDGQRAYKLAR 120
Query: 440 RGESIELSPRRISIFQFDIERSLEDRQNLI---FRVTCSKGTYIRSLCADFGKALGSCAH 496
G+S+EL+PR + I +FD+ L+ V CS GTYIR+L D G ALG H
Sbjct: 121 EGQSVELAPRPVHISRFDVLGVRHPDDGLVDVDVEVDCSSGTYIRALARDAGAALGVGGH 180
Query: 497 LTALRRDSIGQYSADDAWEFKELEEAIT 524
LTALRR +G + D A + L + T
Sbjct: 181 LTALRRTRVGDFGLDRARALEALADEAT 208
>gi|189220157|ref|YP_001940797.1| pseudouridine synthase [Methylacidiphilum infernorum V4]
gi|189187015|gb|ACD84200.1| Pseudouridine synthase [Methylacidiphilum infernorum V4]
Length = 237
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 87/206 (42%), Positives = 128/206 (62%), Gaps = 2/206 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++LV+KPKG+TS V +R+ K+KKVGH GTLDP+ATGLL++ +GKATK+ D
Sbjct: 6 VLLVDKPKGFTSHDVVDFVRKKFKIKKVGHCGTLDPLATGLLVLVLGKATKIQDLLMSED 65
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y GV RLG++T T D+D +++ +P + E+I+K + G+ +QVPPM SAIK
Sbjct: 66 KRYEGVLRLGQSTLTQDSDGQLVEEKPVPPLSLEEIKKVFDRYVGDFYQVPPMISAIKSH 125
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKA 490
G +Y AR G+ IE PR + ++ ++I++ D + F V C KG Y+R+ C D G+
Sbjct: 126 GVPLYKLAREGKEIERKPRLVHVYSYEIKKW--DSPFIHFEVVCGKGFYVRTYCHDIGQD 183
Query: 491 LGSCAHLTALRRDSIGQYSADDAWEF 516
LG HL +L R G + + A F
Sbjct: 184 LGCGGHLFSLVRLQSGNFKLNQALSF 209
>gi|49186660|ref|YP_029912.1| tRNA pseudouridine synthase B [Bacillus anthracis str. Sterne]
gi|65321137|ref|ZP_00394096.1| COG0130: Pseudouridine synthase [Bacillus anthracis str. A2012]
gi|165872605|ref|ZP_02217236.1| tRNA pseudouridine synthase B [Bacillus anthracis str. A0488]
gi|167635824|ref|ZP_02394133.1| tRNA pseudouridine synthase B [Bacillus anthracis str. A0442]
gi|167639765|ref|ZP_02398034.1| tRNA pseudouridine synthase B [Bacillus anthracis str. A0193]
gi|177652143|ref|ZP_02934689.1| tRNA pseudouridine synthase B [Bacillus anthracis str. A0174]
gi|190568450|ref|ZP_03021357.1| tRNA pseudouridine synthase B [Bacillus anthracis str.
Tsiankovskii-I]
gi|227813282|ref|YP_002813291.1| tRNA pseudouridine synthase B [Bacillus anthracis str. CDC 684]
gi|229604348|ref|YP_002868048.1| tRNA pseudouridine synthase B [Bacillus anthracis str. A0248]
gi|254722004|ref|ZP_05183793.1| tRNA pseudouridine synthase B [Bacillus anthracis str. A1055]
gi|254735848|ref|ZP_05193554.1| tRNA pseudouridine synthase B [Bacillus anthracis str. Western
North America USA6153]
gi|254739626|ref|ZP_05197320.1| tRNA pseudouridine synthase B [Bacillus anthracis str. Kruger B]
gi|254756001|ref|ZP_05208032.1| tRNA pseudouridine synthase B [Bacillus anthracis str. Vollum]
gi|254759338|ref|ZP_05211363.1| tRNA pseudouridine synthase B [Bacillus anthracis str. Australia
94]
gi|270000605|ref|YP_003329044.1| tRNA pseudouridine synthase B [Bacillus anthracis str. Ames]
gi|291612220|ref|YP_003541034.1| tRNA pseudouridine synthase B [Bacillus anthracis str. 'Ames
Ancestor']
gi|386737632|ref|YP_006210813.1| tRNA pseudouridine synthase B [Bacillus anthracis str. H9401]
gi|421507350|ref|ZP_15954270.1| tRNA pseudouridine synthase B [Bacillus anthracis str. UR-1]
gi|421639564|ref|ZP_16080155.1| tRNA pseudouridine synthase B [Bacillus anthracis str. BF1]
gi|37088013|sp|P59873.1|TRUB_BACAN RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|49180587|gb|AAT55963.1| tRNA pseudouridine synthase B [Bacillus anthracis str. Sterne]
gi|164711637|gb|EDR17183.1| tRNA pseudouridine synthase B [Bacillus anthracis str. A0488]
gi|167512166|gb|EDR87543.1| tRNA pseudouridine synthase B [Bacillus anthracis str. A0193]
gi|167528781|gb|EDR91539.1| tRNA pseudouridine synthase B [Bacillus anthracis str. A0442]
gi|172082512|gb|EDT67577.1| tRNA pseudouridine synthase B [Bacillus anthracis str. A0174]
gi|190560454|gb|EDV14432.1| tRNA pseudouridine synthase B [Bacillus anthracis str.
Tsiankovskii-I]
gi|224552839|gb|ACN55052.1| tRNA pseudouridine synthase B [Bacillus anthracis str. 'Ames
Ancestor']
gi|227005085|gb|ACP14828.1| tRNA pseudouridine synthase B [Bacillus anthracis str. CDC 684]
gi|229268756|gb|ACQ50393.1| tRNA pseudouridine synthase B [Bacillus anthracis str. A0248]
gi|269850275|gb|ACZ49993.1| tRNA pseudouridine synthase B [Bacillus anthracis str. Ames]
gi|384387484|gb|AFH85145.1| tRNA pseudouridine synthase B [Bacillus anthracis str. H9401]
gi|401822484|gb|EJT21634.1| tRNA pseudouridine synthase B [Bacillus anthracis str. UR-1]
gi|403393229|gb|EJY90474.1| tRNA pseudouridine synthase B [Bacillus anthracis str. BF1]
Length = 307
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 89/218 (40%), Positives = 141/218 (64%), Gaps = 5/218 (2%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+VL++KPKG TS KLR++++ K++GH GTLDP TG+L +CVG+ATK+
Sbjct: 4 VVLLHKPKGMTSHDCVFKLRKILREKRIGHTGTLDPDVTGVLPICVGRATKIAQFLTSET 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V++ + + I +++ +A A+ G I Q+PPMFSA+KV
Sbjct: 64 KTYEGEVTLGFSTTTEDASGEVVETKYVDRVITRKEVEEALATLTGTIEQMPPMFSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDI--ERSLEDRQNLI--FRVTCSKGTYIRSLCA 485
G+K+Y+ AR G+ +E R I+I +F + +R + + +N+ FRVTCSKGTY+R+L
Sbjct: 124 NGKKLYEYARAGQEVERPVRTITIHEFVLLDDREVFEGENISFRFRVTCSKGTYVRTLAV 183
Query: 486 DFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
G+ LG +H++ L R + G++ +D F+E+EE +
Sbjct: 184 MIGEKLGFPSHMSHLVRTASGEFLLEDCISFEEIEENV 221
>gi|281422486|ref|ZP_06253485.1| tRNA pseudouridine synthase B [Prevotella copri DSM 18205]
gi|281403469|gb|EFB34149.1| tRNA pseudouridine synthase B [Prevotella copri DSM 18205]
Length = 238
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 83/218 (38%), Positives = 129/218 (59%), Gaps = 5/218 (2%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVK-----KVGHAGTLDPMATGLLIVCVGKATKLV 363
G ++ ++KP +SF +R L+ K K+GHAGTLDP+ATG+L++C GK TK +
Sbjct: 6 GEIIAIDKPYRMSSFGALAHVRYLLSKKLGFKVKIGHAGTLDPLATGVLVLCTGKCTKQI 65
Query: 364 DRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPM 423
++ Q K Y+ +LG T+++D + V P EHI + + + F GEI QVPP
Sbjct: 66 EQLQTHTKEYTATLQLGATTASYDKEHSVNHTYPTEHITRQLVEETLKQFVGEIQQVPPT 125
Query: 424 FSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSL 483
+SA+KV G++ Y R GE ++L P+ + + + ++ ++ + RV C KGTYIRSL
Sbjct: 126 YSAVKVNGDRSYALRRAGEEVQLKPKTVRVDEIELTDYNDEEKTASIRVVCGKGTYIRSL 185
Query: 484 CADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
D G+AL S A+LTALRR G ++ ++ F +E
Sbjct: 186 ARDIGRALDSGAYLTALRRTKAGSFAVENCISFDHFQE 223
>gi|424781091|ref|ZP_18207957.1| tRNA pseudouridine synthase B [Catellicoccus marimammalium
M35/04/3]
gi|422842511|gb|EKU26963.1| tRNA pseudouridine synthase B [Catellicoccus marimammalium
M35/04/3]
Length = 304
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 95/217 (43%), Positives = 134/217 (61%), Gaps = 6/217 (2%)
Query: 316 KPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSG 375
K KG TS K+R++++ KKVGH GTLDP G+L +CVG+ATKLV++ + K Y G
Sbjct: 9 KEKGMTSHDCVFKMRKILQTKKVGHGGTLDPSVEGVLPICVGRATKLVEKLHELPKTYMG 68
Query: 376 VFRLGEATSTWDADSPVI-QREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEKM 434
LG AT T DAD VI ++E + E+I A ASF G + Q+PPM+SA+KV G+++
Sbjct: 69 EITLGIATETEDADGEVIAKKEVTTPLSTEEIDAAMASFVGTMIQIPPMYSAVKVKGKRL 128
Query: 435 YDKARRGESIELSPRRISIFQFDIERSLE-----DRQNLIFRVTCSKGTYIRSLCADFGK 489
Y+ AR E +E R ++I++F + + Q F VTCSKGTYIR+L D G+
Sbjct: 129 YEYARNHEEVERPQREVTIYEFKRASAPDYDEKTKTQRWRFVVTCSKGTYIRTLSVDLGE 188
Query: 490 ALGSCAHLTALRRDSIGQYSADDAWEFKELEEAITKN 526
LG AH++ L R + G + A DA + E+E A+ KN
Sbjct: 189 KLGFPAHMSQLVRLASGGFQAKDAVKLSEVEAAVEKN 225
>gi|170706782|ref|ZP_02897240.1| tRNA pseudouridine synthase B [Bacillus anthracis str. A0389]
gi|170128200|gb|EDS97069.1| tRNA pseudouridine synthase B [Bacillus anthracis str. A0389]
Length = 307
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 90/221 (40%), Positives = 140/221 (63%), Gaps = 11/221 (4%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+VL++KPKG TS KLR++++ K++GH GTLDP TG+L +CVG+ATK+
Sbjct: 4 VVLLHKPKGMTSHDCVFKLRKILREKRIGHTGTLDPDVTGVLPICVGRATKIAQFLTSET 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V++ + + I +++ +A A+ G I Q+PPMFSA+KV
Sbjct: 64 KTYEGEVTLGFSTTTEDASGEVVETKYVDRVITRKEVEEALATLTGTIEQMPPMFSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQ-------NLIFRVTCSKGTYIRS 482
G+K+Y+ AR G+ +E R I+I +F + L+DR+ + FRVTCSKGTY+R+
Sbjct: 124 NGKKLYEYARAGQEVERPVRTITIHEFVL---LDDREVFEGENISFRFRVTCSKGTYVRT 180
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
L G+ LG +H++ L R + G++ +D F+E+EE +
Sbjct: 181 LAVMIGEKLGFPSHMSHLVRTASGEFLLEDCISFEEIEENV 221
>gi|430750266|ref|YP_007213174.1| tRNA pseudouridine 55 synthase [Thermobacillus composti KWC4]
gi|430734231|gb|AGA58176.1| tRNA pseudouridine 55 synthase [Thermobacillus composti KWC4]
Length = 315
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 89/213 (41%), Positives = 130/213 (61%), Gaps = 4/213 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ V KP GWTS V K+RR +++++GHAGTLDP TG+L +C+G+AT++V+ Q +
Sbjct: 19 ILAVWKPAGWTSHDVVAKVRRWTRMRRIGHAGTLDPQVTGVLPLCLGRATRVVEYMQELP 78
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y V +LG AT T D V+ H+ + +R+A A F GEI QVPPM+SA+KVG
Sbjct: 79 KAYETVMQLGVATDTEDLTGTVLDTSDASHVTEAMLREALARFIGEIEQVPPMYSAVKVG 138
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLE---DRQNLIFRVTCSKGTYIRSLCADF 487
G K+Y+ AR G+++E R+++I ++ R E R + F CSKGTYIR+LC D
Sbjct: 139 GRKLYELAREGKTVERKARKVTIHSLEL-RFAELGVPRPRIGFGAVCSKGTYIRTLCVDI 197
Query: 488 GKALGSCAHLTALRRDSIGQYSADDAWEFKELE 520
G+ALG A + +L R D + +E
Sbjct: 198 GRALGVHAAMESLVRTMSAGLGESDCLTMERIE 230
>gi|294790402|ref|ZP_06755560.1| tRNA pseudouridine synthase B [Scardovia inopinata F0304]
gi|294458299|gb|EFG26652.1| tRNA pseudouridine synthase B [Scardovia inopinata F0304]
Length = 358
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 95/210 (45%), Positives = 130/210 (61%), Gaps = 9/210 (4%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++LV+KP+G TS V R L+ + VGHAGTLDPMATGLLI+ GKAT+L+
Sbjct: 28 ILLVDKPQGVTSHDVVAAARSLLGTRHVGHAGTLDPMATGLLILGYGKATRLLSLITRAD 87
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y V RLG+AT+T DA+ V+ + P + D I++A++ G I QVP +SAIKV
Sbjct: 88 KTYQTVIRLGQATTTDDAEGSVVSQGPVSSLTDRIIQEASSRLTGTIDQVPSSYSAIKVR 147
Query: 431 GEKMYDKARRGESIELSPRRISIFQF---DIERSLEDRQ------NLIFRVTCSKGTYIR 481
G++ YD AR+G ++L+ R+++I F DI D ++ +TCS GTYIR
Sbjct: 148 GQRAYDLARQGREVQLASRKVTISDFTIHDIRPGQTDSVPAWPVIDVAATITCSSGTYIR 207
Query: 482 SLCADFGKALGSCAHLTALRRDSIGQYSAD 511
+L D GK LG AHLT LRR IG++S D
Sbjct: 208 ALGRDLGKILGCGAHLTMLRRTRIGKFSLD 237
>gi|219854672|ref|YP_002471794.1| hypothetical protein CKR_1329 [Clostridium kluyveri NBRC 12016]
gi|219568396|dbj|BAH06380.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 290
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 92/207 (44%), Positives = 129/207 (62%), Gaps = 3/207 (1%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
+NKP+G TSF V K+R ++K +KVGH GTLDPMA+G+L +CVG+ATK D K Y
Sbjct: 8 INKPEGMTSFDVVRKVRFMLKNEKVGHTGTLDPMASGVLPICVGRATKFADYMVESKKIY 67
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEK 433
RLG T T+D + V+ ++K +DI + SF+GEI QVPPM+SA+KV G +
Sbjct: 68 LAELRLGITTETYDREGSVVNTRGV-YLKKKDIIEEILSFQGEIEQVPPMYSALKVNGRR 126
Query: 434 MYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKALGS 493
+Y+ AR+G IE R+I+I+ DI + + F+VTCSKGTYIRSLC D G L
Sbjct: 127 LYELARKGIEIERKKRKITIYSIDIVNI--ELPYVSFKVTCSKGTYIRSLCNDIGNNLNC 184
Query: 494 CAHLTALRRDSIGQYSADDAWEFKELE 520
+ L+R S G ++ D+ + L+
Sbjct: 185 GGTMWNLKRLSTGNFNIADSIALEYLD 211
>gi|228922564|ref|ZP_04085864.1| tRNA pseudouridine synthase B [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|423635419|ref|ZP_17611072.1| tRNA pseudouridine synthase B [Bacillus cereus VD156]
gi|228836993|gb|EEM82334.1| tRNA pseudouridine synthase B [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|401278170|gb|EJR84106.1| tRNA pseudouridine synthase B [Bacillus cereus VD156]
Length = 307
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 90/221 (40%), Positives = 138/221 (62%), Gaps = 11/221 (4%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+VL++KPKG TS KLR++++ K++GH GTLDP TG+L +CVG+ATK+
Sbjct: 4 VVLLHKPKGMTSHDCVFKLRKILREKRIGHTGTLDPDVTGVLPICVGRATKIAQFLTSET 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V++ + + I +++ K A G I Q+PPMFSA+KV
Sbjct: 64 KTYEGEVTLGFSTTTEDASGEVVETKNVDRTITRKEVEKVLAELTGTIEQMPPMFSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQ-------NLIFRVTCSKGTYIRS 482
G+K+Y+ AR G+ +E R I+I +F + L+DR+ + FRVTCSKGTY+R+
Sbjct: 124 NGKKLYEYARAGQEVERPVRTITIHEFVL---LDDREVFEGENISFRFRVTCSKGTYVRT 180
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
L G+ LG +H++ L R + G++ +D F+E+EE +
Sbjct: 181 LAVMIGEKLGFPSHMSHLVRTASGEFLLEDCISFEEIEENV 221
>gi|182626360|ref|ZP_02954114.1| tRNA pseudouridine synthase B [Clostridium perfringens D str.
JGS1721]
gi|177908311|gb|EDT70859.1| tRNA pseudouridine synthase B [Clostridium perfringens D str.
JGS1721]
Length = 294
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 88/215 (40%), Positives = 129/215 (60%), Gaps = 1/215 (0%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
+ K G TSF V +RR+ K+KKVGH GTLDP A+G+L VC+GKATK++D K Y
Sbjct: 7 IYKNTGMTSFDVVAIVRRVAKMKKVGHTGTLDPAASGVLPVCLGKATKIIDYIMENKKVY 66
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEK 433
+LG T T+D + V++ E HI ++I SF G I QVPPM+SA+K G +
Sbjct: 67 RVNLKLGMVTDTYDLEGEVLREEDASHITKDEILNCINSFLGTIDQVPPMYSALKQNGVR 126
Query: 434 MYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKALGS 493
+Y+ AR+G + R+I+I+ + +E N+ V CSKGTYIRSLC D G+ L +
Sbjct: 127 LYELARQGIEVHREARKITIYSIE-NIKIESNDNIQMDVCCSKGTYIRSLCYDIGEKLNA 185
Query: 494 CAHLTALRRDSIGQYSADDAWEFKELEEAITKNYF 528
A +TAL R G ++ ++A ++L E + + +
Sbjct: 186 GATMTALERIQNGPFTKEEAINIEDLTEELLEKHI 220
>gi|228966755|ref|ZP_04127799.1| tRNA pseudouridine synthase B [Bacillus thuringiensis serovar sotto
str. T04001]
gi|402558864|ref|YP_006601588.1| tRNA pseudouridine synthase B [Bacillus thuringiensis HD-771]
gi|423359154|ref|ZP_17336657.1| tRNA pseudouridine synthase B [Bacillus cereus VD022]
gi|228792854|gb|EEM40412.1| tRNA pseudouridine synthase B [Bacillus thuringiensis serovar sotto
str. T04001]
gi|401085026|gb|EJP93272.1| tRNA pseudouridine synthase B [Bacillus cereus VD022]
gi|401787516|gb|AFQ13555.1| tRNA pseudouridine synthase B [Bacillus thuringiensis HD-771]
Length = 307
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 91/221 (41%), Positives = 138/221 (62%), Gaps = 11/221 (4%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+VL++KPKG TS KLR++++ K++GH GTLDP TG+L +CVG+ATK+
Sbjct: 4 VVLLHKPKGMTSHDCVFKLRKVLREKRIGHTGTLDPDVTGVLPICVGRATKIAQFLTSET 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V++ + + I ++I K A G I Q+PPMFSA+KV
Sbjct: 64 KTYEGEVTLGFSTTTEDASGEVVETKNVDRAITRKEIEKVLAELTGTIEQMPPMFSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQ-------NLIFRVTCSKGTYIRS 482
G+K+Y+ AR G+ +E R I+I +F + L+DR+ + FRVTCSKGTY+R+
Sbjct: 124 NGKKLYEYARAGQDVERPVRTITIHEFVL---LDDREVFEGENISFRFRVTCSKGTYVRT 180
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
L G+ LG +H++ L R + G++ +D F+E+EE +
Sbjct: 181 LAVMIGEKLGFPSHMSHLVRTASGEFLLEDCISFEEIEENV 221
>gi|409358303|ref|ZP_11236666.1| tRNA pseudouridine synthase B [Dietzia alimentaria 72]
Length = 303
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 97/230 (42%), Positives = 133/230 (57%), Gaps = 5/230 (2%)
Query: 293 IVSRSTELPPTWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLL 352
+ SR +E P P +V+V+KP G +S V +LRR +KVGHAGTLDPMATG+L
Sbjct: 1 MTSRRSEPRPA---PEPGLVVVDKPGGMSSHDVVARLRRFFGTRKVGHAGTLDPMATGVL 57
Query: 353 IVCVGKATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAAS 412
+V + +ATK++ K Y RLG+ T+T DA+ + + DE I A+
Sbjct: 58 VVGIERATKMLGLLALETKSYEATIRLGQTTATDDAEGEITATADASEVSDEAIDAGVAA 117
Query: 413 FRGEIWQVPPMFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLE--DRQNLIF 470
GEI QVP SAIKV G++ YD+ R GE + L RR+++ +FD+ L + +L+
Sbjct: 118 LTGEIDQVPSAVSAIKVDGKRAYDRVRAGEEVVLKSRRVTVSRFDVLGRLRSGEVVDLVV 177
Query: 471 RVTCSKGTYIRSLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELE 520
V CS GTYIR+L D G LG HLTALRR +G + D A +ELE
Sbjct: 178 VVDCSTGTYIRALARDLGAGLGVGGHLTALRRTMVGPFDLDVARTLEELE 227
>gi|269956013|ref|YP_003325802.1| tRNA pseudouridine synthase B [Xylanimonas cellulosilytica DSM
15894]
gi|269304694|gb|ACZ30244.1| tRNA pseudouridine synthase B [Xylanimonas cellulosilytica DSM
15894]
Length = 325
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 89/209 (42%), Positives = 124/209 (59%), Gaps = 7/209 (3%)
Query: 312 VLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIK 371
V+V+KP GWTS V GK+R L +KVGHAGTLDPMATG+L+V +G+AT+L+ G K
Sbjct: 26 VIVDKPAGWTSHDVVGKVRWLAGTRKVGHAGTLDPMATGVLVVGIGRATRLLTYVVGADK 85
Query: 372 GYSGVFRLGEATSTWDADSPVIQREPWEHIKDED-IRKAAASFRGEIWQVPPMFSAIKVG 430
Y RLG T+T DA+ V+ + D+D +R A A G+I QVP SAIKV
Sbjct: 86 AYDATIRLGVGTTTDDAEGEVVATPGFTGTADDDALRAAVADLTGDILQVPTTVSAIKVD 145
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQ------NLIFRVTCSKGTYIRSLC 484
G++ Y AR G+ +EL R +++ + + + +L + GTY+R+L
Sbjct: 146 GKRAYALARAGQEVELKARPVTVRELTVRAARATSAAGTPVLDLDVTAVVTSGTYVRALA 205
Query: 485 ADFGKALGSCAHLTALRRDSIGQYSADDA 513
D G ALG+ HLTALRR +G ++ DDA
Sbjct: 206 RDLGAALGTAGHLTALRRTRVGGHTLDDA 234
>gi|153954059|ref|YP_001394824.1| tRNA pseudouridine synthase B [Clostridium kluyveri DSM 555]
gi|189036464|sp|A5N845.1|TRUB_CLOK5 RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|146346940|gb|EDK33476.1| TruB [Clostridium kluyveri DSM 555]
Length = 289
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 92/207 (44%), Positives = 129/207 (62%), Gaps = 3/207 (1%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
+NKP+G TSF V K+R ++K +KVGH GTLDPMA+G+L +CVG+ATK D K Y
Sbjct: 7 INKPEGMTSFDVVRKVRFMLKNEKVGHTGTLDPMASGVLPICVGRATKFADYMVESKKIY 66
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEK 433
RLG T T+D + V+ ++K +DI + SF+GEI QVPPM+SA+KV G +
Sbjct: 67 LAELRLGITTETYDREGSVVNTRGV-YLKKKDIIEEILSFQGEIEQVPPMYSALKVNGRR 125
Query: 434 MYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKALGS 493
+Y+ AR+G IE R+I+I+ DI + + F+VTCSKGTYIRSLC D G L
Sbjct: 126 LYELARKGIEIERKKRKITIYSIDIVNI--ELPYVSFKVTCSKGTYIRSLCNDIGNNLNC 183
Query: 494 CAHLTALRRDSIGQYSADDAWEFKELE 520
+ L+R S G ++ D+ + L+
Sbjct: 184 GGTMWNLKRLSTGNFNIADSIALEYLD 210
>gi|17546010|ref|NP_519412.1| tRNA pseudouridine synthase B [Ralstonia solanacearum GMI1000]
gi|37089220|sp|Q8XZV4.1|TRUB_RALSO RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|17428305|emb|CAD14993.1| probable trna pseudouridine synthase b (trna pseudouridine
55synthase) (psi55 synthase) (trna-uridine isomerase)
(trna pseudouridylate synthase) protein [Ralstonia
solanacearum GMI1000]
Length = 314
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 95/214 (44%), Positives = 128/214 (59%), Gaps = 3/214 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L++KP GW+S + +RL+ KK GH GTLDP+ATGLL +C G+ATK
Sbjct: 20 VLLLDKPIGWSSNDALIRAKRLLWAKKAGHTGTLDPLATGLLPLCFGEATKFSQDLLEAD 79
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y V RLG TST DA+ V+ P + E +R A F GEI QVPPM SA+K
Sbjct: 80 KTYEAVVRLGIRTSTADAEGEVLSERPVA-VTPEQLRAAIGRFVGEIDQVPPMHSALKKD 138
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQ--NLIFRVTCSKGTYIRSLCADFG 488
G+ +Y+ AR G+++E + RR++I D+ + D + RV CSKGTYIR+L D G
Sbjct: 139 GKPLYEYARAGQTVERAARRVTIRAIDVLATDLDAAAPTVTLRVCCSKGTYIRTLGEDLG 198
Query: 489 KALGSCAHLTALRRDSIGQYSADDAWEFKELEEA 522
+ALG AHL ALRR +G + D A + LE A
Sbjct: 199 EALGCGAHLVALRRTQVGSLTLDGAVTLEALEAA 232
>gi|94268660|ref|ZP_01291249.1| tRNA pseudouridine synthase B [delta proteobacterium MLMS-1]
gi|93451515|gb|EAT02338.1| tRNA pseudouridine synthase B [delta proteobacterium MLMS-1]
Length = 259
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 98/216 (45%), Positives = 131/216 (60%), Gaps = 3/216 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGK-ATKLVDRYQGM 369
++ ++KP G +SF + +RR + +KKVGHAGTLDP A+GLL+VCVG+ AT+LV+R
Sbjct: 13 VIPLDKPVGPSSFRLVQLVRRALGIKKVGHAGTLDPFASGLLLVCVGRGATRLVERLMAG 72
Query: 370 IKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y +LG AT T D + V E H + +++ FRGEI QVPP FSA+K
Sbjct: 73 DKEYLATLQLGVATDTHDREGQVTATEEVTHEQLLRLQEVLFRFRGEILQVPPAFSAVKH 132
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQN-LIFRVTCSKGTYIRSLCADFG 488
G +Y ARRGE IE PRR+ I + L+ RQ L+ RV CSKGTYIRSL + G
Sbjct: 133 QGRPLYAYARRGEIIEKPPRRVKIHELT-PLELDRRQRRLVIRVRCSKGTYIRSLAHEIG 191
Query: 489 KALGSCAHLTALRRDSIGQYSADDAWEFKELEEAIT 524
++LG AHL LRR + G + ++A L E T
Sbjct: 192 QSLGCGAHLLELRRLASGPFRVEEAVPGDLLAEPAT 227
>gi|229019004|ref|ZP_04175846.1| tRNA pseudouridine synthase B [Bacillus cereus AH1273]
gi|229025249|ref|ZP_04181671.1| tRNA pseudouridine synthase B [Bacillus cereus AH1272]
gi|423389883|ref|ZP_17367109.1| tRNA pseudouridine synthase B [Bacillus cereus BAG1X1-3]
gi|423418283|ref|ZP_17395372.1| tRNA pseudouridine synthase B [Bacillus cereus BAG3X2-1]
gi|228736077|gb|EEL86650.1| tRNA pseudouridine synthase B [Bacillus cereus AH1272]
gi|228742332|gb|EEL92490.1| tRNA pseudouridine synthase B [Bacillus cereus AH1273]
gi|401106556|gb|EJQ14517.1| tRNA pseudouridine synthase B [Bacillus cereus BAG3X2-1]
gi|401641974|gb|EJS59691.1| tRNA pseudouridine synthase B [Bacillus cereus BAG1X1-3]
Length = 307
Score = 173 bits (438), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 90/218 (41%), Positives = 138/218 (63%), Gaps = 5/218 (2%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+VL++KPKG TS KLR++++ K++GH GTLDP TG+L +CVGKATK+
Sbjct: 4 VVLLHKPKGMTSHDCVFKLRKILREKRIGHTGTLDPDVTGVLPICVGKATKIAQFLTSET 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V++ + + I +++ A G I Q+PPMFSA+KV
Sbjct: 64 KTYEGEVTLGFSTTTEDASGEVVETKNVDRVITRKEVEDVLAKLTGTIEQMPPMFSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDI--ERSLEDRQNLI--FRVTCSKGTYIRSLCA 485
G+K+Y+ AR G+ +E R I+I +F + ER + + +N+ FRVTCSKGTY+R+L
Sbjct: 124 NGKKLYEYARAGQEVERPVRTITIHEFVLLDEREVFEGENISFRFRVTCSKGTYVRTLAV 183
Query: 486 DFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
G+ LG +H++ L R + G++ +D F+E+EE +
Sbjct: 184 MIGEKLGFPSHMSHLVRTASGEFLLEDCISFEEIEENV 221
>gi|18310665|ref|NP_562599.1| tRNA pseudouridine synthase B [Clostridium perfringens str. 13]
gi|168214484|ref|ZP_02640109.1| tRNA pseudouridine synthase B [Clostridium perfringens CPE str.
F4969]
gi|37089211|sp|Q8XJS1.1|TRUB_CLOPE RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|18145346|dbj|BAB81389.1| tRNA-pseudouridine synthase B [Clostridium perfringens str. 13]
gi|170714037|gb|EDT26219.1| tRNA pseudouridine synthase B [Clostridium perfringens CPE str.
F4969]
Length = 294
Score = 173 bits (438), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 88/215 (40%), Positives = 128/215 (59%), Gaps = 1/215 (0%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
+ K G TSF V +RR+ K+KKVGH GTLDP A+G+L VC+GKATK++D K Y
Sbjct: 7 IYKNTGMTSFDVVAMVRRVAKMKKVGHTGTLDPAASGVLPVCLGKATKIIDYIMENKKVY 66
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEK 433
+LG T T+D + V++ E HI ++I SF G I QVPPM+SA+K G +
Sbjct: 67 RVNLKLGMVTDTYDLEGEVLREEDASHITKDEILNCINSFVGTIDQVPPMYSALKQNGVR 126
Query: 434 MYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKALGS 493
+Y+ AR+G + R+I+I+ + +E N+ V CSKGTYIRSLC D G+ L
Sbjct: 127 LYELARQGIEVHREARKITIYSIE-NIKIESNDNIQMDVCCSKGTYIRSLCYDIGEKLNV 185
Query: 494 CAHLTALRRDSIGQYSADDAWEFKELEEAITKNYF 528
A +TAL R G ++ ++A ++L E + + +
Sbjct: 186 GATMTALERIQNGTFTKEEAINIEDLTEELLEKHI 220
>gi|228954086|ref|ZP_04116115.1| tRNA pseudouridine synthase B [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|229071308|ref|ZP_04204531.1| tRNA pseudouridine synthase B [Bacillus cereus F65185]
gi|229081065|ref|ZP_04213575.1| tRNA pseudouridine synthase B [Bacillus cereus Rock4-2]
gi|229180086|ref|ZP_04307430.1| tRNA pseudouridine synthase B [Bacillus cereus 172560W]
gi|229191979|ref|ZP_04318949.1| tRNA pseudouridine synthase B [Bacillus cereus ATCC 10876]
gi|365159413|ref|ZP_09355594.1| tRNA pseudouridine synthase B [Bacillus sp. 7_6_55CFAA_CT2]
gi|423412385|ref|ZP_17389505.1| tRNA pseudouridine synthase B [Bacillus cereus BAG3O-2]
gi|423425946|ref|ZP_17402977.1| tRNA pseudouridine synthase B [Bacillus cereus BAG3X2-2]
gi|423431830|ref|ZP_17408834.1| tRNA pseudouridine synthase B [Bacillus cereus BAG4O-1]
gi|423437265|ref|ZP_17414246.1| tRNA pseudouridine synthase B [Bacillus cereus BAG4X12-1]
gi|423503513|ref|ZP_17480105.1| tRNA pseudouridine synthase B [Bacillus cereus HD73]
gi|449090751|ref|YP_007423192.1| tRNA pseudouridine synthase B [Bacillus thuringiensis serovar
kurstaki str. HD73]
gi|228591530|gb|EEK49379.1| tRNA pseudouridine synthase B [Bacillus cereus ATCC 10876]
gi|228603295|gb|EEK60772.1| tRNA pseudouridine synthase B [Bacillus cereus 172560W]
gi|228702109|gb|EEL54585.1| tRNA pseudouridine synthase B [Bacillus cereus Rock4-2]
gi|228711762|gb|EEL63714.1| tRNA pseudouridine synthase B [Bacillus cereus F65185]
gi|228805652|gb|EEM52242.1| tRNA pseudouridine synthase B [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|363625411|gb|EHL76452.1| tRNA pseudouridine synthase B [Bacillus sp. 7_6_55CFAA_CT2]
gi|401104453|gb|EJQ12430.1| tRNA pseudouridine synthase B [Bacillus cereus BAG3O-2]
gi|401110693|gb|EJQ18592.1| tRNA pseudouridine synthase B [Bacillus cereus BAG3X2-2]
gi|401116586|gb|EJQ24424.1| tRNA pseudouridine synthase B [Bacillus cereus BAG4O-1]
gi|401120420|gb|EJQ28216.1| tRNA pseudouridine synthase B [Bacillus cereus BAG4X12-1]
gi|402458867|gb|EJV90607.1| tRNA pseudouridine synthase B [Bacillus cereus HD73]
gi|449024508|gb|AGE79671.1| tRNA pseudouridine synthase B [Bacillus thuringiensis serovar
kurstaki str. HD73]
Length = 307
Score = 173 bits (438), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 90/221 (40%), Positives = 138/221 (62%), Gaps = 11/221 (4%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+VL++KPKG TS KLR++++ K++GH GTLDP TG+L +CVG+ATK+
Sbjct: 4 VVLLHKPKGMTSHDCVFKLRKILREKRIGHTGTLDPDVTGVLPICVGRATKIAQFLTSET 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V++ + + I +++ K A G I Q+PPMFSA+KV
Sbjct: 64 KTYEGEVTLGFSTTTEDASGEVVETKNVDRTITRKEVEKVLAELTGTIEQMPPMFSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQ-------NLIFRVTCSKGTYIRS 482
G+K+Y+ AR G+ +E R I+I +F + L+DR+ + FRVTCSKGTY+R+
Sbjct: 124 NGKKLYEYARAGQEVERPVRTITIHEFIL---LDDREVFEGENISFRFRVTCSKGTYVRT 180
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
L G+ LG +H++ L R + G++ +D F+E+EE +
Sbjct: 181 LAVMIGEKLGFPSHMSHLIRTASGEFLLEDCISFEEIEENV 221
>gi|423367853|ref|ZP_17345285.1| tRNA pseudouridine synthase B [Bacillus cereus VD142]
gi|401082714|gb|EJP90979.1| tRNA pseudouridine synthase B [Bacillus cereus VD142]
Length = 307
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 89/218 (40%), Positives = 138/218 (63%), Gaps = 5/218 (2%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+VL++KPKG TS KLR++++ K++GH GTLDP TG+L +CVG+ATK+
Sbjct: 4 VVLLHKPKGMTSHDCVFKLRKILREKRIGHTGTLDPDVTGVLPICVGRATKIAQFLTSET 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V++++ I +++ + A G I Q+PPMFSA+KV
Sbjct: 64 KTYEGEVTLGFSTTTEDASGEVVEKQDVNRVITRKEVEEVLAELTGTIEQMPPMFSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDI--ERSLEDRQNLI--FRVTCSKGTYIRSLCA 485
G+K+Y+ AR G+ +E R I+I +F + ER + + N+ FRVTCSKGTY+R+L
Sbjct: 124 NGKKLYEYARAGQEVERPVRTITIHEFVLLDEREVFEGGNISFRFRVTCSKGTYVRTLAV 183
Query: 486 DFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
G+ LG +H++ L R + G++ +D F+E+EE +
Sbjct: 184 MIGEKLGFPSHMSHLVRTASGEFLLEDCISFEEIEENV 221
>gi|196042147|ref|ZP_03109430.1| tRNA pseudouridine synthase B [Bacillus cereus NVH0597-99]
gi|196026999|gb|EDX65623.1| tRNA pseudouridine synthase B [Bacillus cereus NVH0597-99]
Length = 307
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 90/221 (40%), Positives = 139/221 (62%), Gaps = 11/221 (4%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+VL++KPKG TS KLR++++ K++GH GTLDP TG+L +CVG+ATK+
Sbjct: 4 VVLLHKPKGMTSHDCVFKLRKILREKRIGHTGTLDPDVTGVLPICVGRATKIAQFLTSET 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V++ + + I +++ A A+ G I Q+PPMFSA+KV
Sbjct: 64 KTYEGEVTLGFSTTTEDASGEVVETKHVDRVITRKEVEGALATLTGTIEQMPPMFSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQ-------NLIFRVTCSKGTYIRS 482
G+K+Y+ AR G+ +E R I+I +F + L+DR+ + FRVTCSKGTY+R+
Sbjct: 124 NGKKLYEYARAGQEVERPVRTITIHEFVL---LDDREVFEGETISFRFRVTCSKGTYVRT 180
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
L G+ LG +H++ L R + G++ +D F+E+EE +
Sbjct: 181 LAVMIGEKLGFPSHMSHLVRTASGEFLLEDCISFEEIEENV 221
>gi|315918414|ref|ZP_07914654.1| tRNA pseudouridine synthase B [Fusobacterium gonidiaformans ATCC
25563]
gi|313692289|gb|EFS29124.1| tRNA pseudouridine synthase B [Fusobacterium gonidiaformans ATCC
25563]
Length = 285
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 85/213 (39%), Positives = 134/213 (62%), Gaps = 2/213 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++++NK KG +SF V LR+L++ +K+GH GTLDP+ATG+LI+C+GKAT+L +
Sbjct: 4 IIIINKEKGMSSFDVIRSLRKLLQERKIGHTGTLDPLATGVLILCLGKATRLSQEIEAQE 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y G T T+D + ++ P + +K E+ + + ++G+I Q+PPM+SAIK+
Sbjct: 64 KVYEAEMEFGYQTDTYDLEGEIVATSPKKEVKREEFEEVLSHWKGKISQIPPMYSAIKIQ 123
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKA 490
G+K+Y+ AR+G I+ R + IF DI E ++ I R SKGTYIRSL D G+
Sbjct: 124 GKKLYELARKGIEIKREGREVEIFGIDI-LDFEGKKAKI-RTKVSKGTYIRSLIYDIGEE 181
Query: 491 LGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
LGS A +TAL R +G++ +++ E+ + I
Sbjct: 182 LGSFATMTALNRIQVGEHHLKNSYTISEIHDKI 214
>gi|170687863|ref|ZP_02879077.1| tRNA pseudouridine synthase B [Bacillus anthracis str. A0465]
gi|254683483|ref|ZP_05147343.1| tRNA pseudouridine synthase B [Bacillus anthracis str. CNEVA-9066]
gi|170668179|gb|EDT18928.1| tRNA pseudouridine synthase B [Bacillus anthracis str. A0465]
Length = 307
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 90/221 (40%), Positives = 140/221 (63%), Gaps = 11/221 (4%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+VL++KPKG TS KLR++++ K++GH GTLDP TG+L +CVG+ATK+
Sbjct: 4 VVLLHKPKGVTSHDCVFKLRKILREKRIGHTGTLDPDVTGVLPICVGRATKIAQFLTSET 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V++ + + I +++ +A A+ G I Q+PPMFSA+KV
Sbjct: 64 KTYEGEVTLGFSTTTEDASGEVVETKYVDRVITRKEVEEALATLTGTIEQMPPMFSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQ-------NLIFRVTCSKGTYIRS 482
G+K+Y+ AR G+ +E R I+I +F + L+DR+ + FRVTCSKGTY+R+
Sbjct: 124 NGKKLYEYARAGQEVERPVRTITIHEFVL---LDDREVFEGENISFRFRVTCSKGTYVRT 180
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
L G+ LG +H++ L R + G++ +D F+E+EE +
Sbjct: 181 LAVMIGEKLGFPSHMSHLVRTASGEFLLEDCISFEEIEENV 221
>gi|297626624|ref|YP_003688387.1| tRNA pseudouridine synthase B [Propionibacterium freudenreichii
subsp. shermanii CIRM-BIA1]
gi|296922389|emb|CBL56961.1| tRNA pseudouridine synthase B (tRNA pseudouridine 55 synthase)
[Propionibacterium freudenreichii subsp. shermanii
CIRM-BIA1]
Length = 298
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 89/213 (41%), Positives = 127/213 (59%), Gaps = 8/213 (3%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++V+KP G TS V G+ R L+ +KVGHAGTLDPMATG+LIV V +AT+L+
Sbjct: 11 LLIVDKPAGLTSQQVVGRCRHLLGTRKVGHAGTLDPMATGVLIVGVNRATRLLGHLAMHD 70
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y RLG +T+T DA+ V+ + ++DE + A G+I QVP SAIKV
Sbjct: 71 KRYLATIRLGASTTTDDAEGEVVAQTDASGVEDEQVNAGIAGLTGQIDQVPSSVSAIKVN 130
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQ-----NLIFRVTCSKGTYIRSLCA 485
G++ Y R+G+ + L+ RR+++ F + L R+ +L V C+ GTY+R+L
Sbjct: 131 GQRAYALVRKGQDVTLAARRVTVSDFTV---LATRREGPFIDLDVTVECTSGTYVRALAR 187
Query: 486 DFGKALGSCAHLTALRRDSIGQYSADDAWEFKE 518
D G LG HLTALRR IG+Y DDA + +
Sbjct: 188 DLGAGLGVGGHLTALRRTRIGRYLIDDAVQLPD 220
>gi|229174476|ref|ZP_04302008.1| tRNA pseudouridine synthase B [Bacillus cereus MM3]
gi|423401348|ref|ZP_17378521.1| tRNA pseudouridine synthase B [Bacillus cereus BAG2X1-2]
gi|423477948|ref|ZP_17454663.1| tRNA pseudouridine synthase B [Bacillus cereus BAG6X1-1]
gi|228609036|gb|EEK66326.1| tRNA pseudouridine synthase B [Bacillus cereus MM3]
gi|401654338|gb|EJS71881.1| tRNA pseudouridine synthase B [Bacillus cereus BAG2X1-2]
gi|402428110|gb|EJV60207.1| tRNA pseudouridine synthase B [Bacillus cereus BAG6X1-1]
Length = 307
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 89/218 (40%), Positives = 140/218 (64%), Gaps = 5/218 (2%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+VL++KPKG TS KLR++++ K++GH GTLDP TG+L +CVG+ATK+
Sbjct: 4 VVLLHKPKGMTSHDCVFKLRKILREKRIGHTGTLDPDVTGVLPICVGRATKIAQFLTSET 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V++ + + I +++ A A+ G I Q+PPMFSA+KV
Sbjct: 64 KTYEGEVTLGFSTTTEDASGEVVETKNVDRVITRKEVEGALAALTGTIEQMPPMFSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDI--ERSLEDRQNLI--FRVTCSKGTYIRSLCA 485
G+K+Y+ AR G+ +E R I+I +F + +R + + +N+ FRVTCSKGTY+R+L
Sbjct: 124 NGKKLYEYARAGQEVERPVRTITIHEFVLLDDREVFEGENISFRFRVTCSKGTYVRTLAV 183
Query: 486 DFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
G+ LG +H++ L R + G++ +D F+E+EE +
Sbjct: 184 MIGEKLGFPSHMSHLVRTASGEFLLEDCISFEEIEENV 221
>gi|196044668|ref|ZP_03111903.1| tRNA pseudouridine synthase B [Bacillus cereus 03BB108]
gi|229186047|ref|ZP_04313217.1| tRNA pseudouridine synthase B [Bacillus cereus BGSC 6E1]
gi|196024703|gb|EDX63375.1| tRNA pseudouridine synthase B [Bacillus cereus 03BB108]
gi|228597466|gb|EEK55116.1| tRNA pseudouridine synthase B [Bacillus cereus BGSC 6E1]
Length = 307
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 89/218 (40%), Positives = 140/218 (64%), Gaps = 5/218 (2%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+VL++KPKG TS KLR++++ K++GH GTLDP TG+L +CVG+ATK+
Sbjct: 4 VVLLHKPKGMTSHDCVFKLRKILREKRIGHTGTLDPDVTGVLPICVGRATKIAQFLTSET 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V++ + + I +++ A A+ G I Q+PPMFSA+KV
Sbjct: 64 KTYEGEVTLGFSTTTEDASGEVVETKHVDRVITRKEVEGALAALTGTIEQMPPMFSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDI--ERSLEDRQNLI--FRVTCSKGTYIRSLCA 485
G+K+Y+ AR G+ +E R I+I +F + +R + + +N+ FRVTCSKGTY+R+L
Sbjct: 124 NGKKLYEYARAGQEVERPVRTITIHEFVLLDDREVFEGENISFRFRVTCSKGTYVRTLAV 183
Query: 486 DFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
G+ LG +H++ L R + G++ +D F+E+EE +
Sbjct: 184 MIGEKLGFPSHMSHLVRTASGEFLLEDCISFEEIEENV 221
>gi|229117296|ref|ZP_04246674.1| tRNA pseudouridine synthase B [Bacillus cereus Rock1-3]
gi|423378351|ref|ZP_17355635.1| tRNA pseudouridine synthase B [Bacillus cereus BAG1O-2]
gi|423547094|ref|ZP_17523452.1| tRNA pseudouridine synthase B [Bacillus cereus HuB5-5]
gi|423623114|ref|ZP_17598892.1| tRNA pseudouridine synthase B [Bacillus cereus VD148]
gi|228666196|gb|EEL21660.1| tRNA pseudouridine synthase B [Bacillus cereus Rock1-3]
gi|401178815|gb|EJQ85988.1| tRNA pseudouridine synthase B [Bacillus cereus HuB5-5]
gi|401259887|gb|EJR66061.1| tRNA pseudouridine synthase B [Bacillus cereus VD148]
gi|401636617|gb|EJS54371.1| tRNA pseudouridine synthase B [Bacillus cereus BAG1O-2]
Length = 307
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 89/218 (40%), Positives = 138/218 (63%), Gaps = 5/218 (2%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+VL++KPKG TS KLR++++ K++GH GTLDP TG+L +CVG+ATK+ I
Sbjct: 4 VVLLHKPKGMTSHDCVFKLRKILREKRIGHTGTLDPDVTGVLPICVGRATKIAQFLTSEI 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V++ + I +++ A+ G I Q PPMFSA+KV
Sbjct: 64 KTYEGEVTLGFSTTTEDASGEVVETTNVDRSITRKEVEGVLAALTGTIEQTPPMFSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDI--ERSLEDRQNLI--FRVTCSKGTYIRSLCA 485
G+K+Y+ AR G+ +E R I+I +F + +R + + +N+ FRVTCSKGTY+R+L
Sbjct: 124 NGKKLYEYARAGQEVERPVRTITIHEFVLLDDREMFEGENISFRFRVTCSKGTYVRTLAV 183
Query: 486 DFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
G+ LG +H++ L R + G++ +D F+E+EE +
Sbjct: 184 MIGEKLGFPSHMSHLVRTASGEFLLEDCISFEEIEENV 221
>gi|47569087|ref|ZP_00239776.1| tRNA pseudouridine synthase B [Bacillus cereus G9241]
gi|47554249|gb|EAL12611.1| tRNA pseudouridine synthase B [Bacillus cereus G9241]
Length = 307
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 89/221 (40%), Positives = 139/221 (62%), Gaps = 11/221 (4%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+VL++KPKG TS KLR++++ K++GH GTLDP TG+L +CVG+ATK+
Sbjct: 4 VVLLHKPKGMTSHDCVFKLRKILREKRIGHTGTLDPDVTGVLPICVGRATKIAQFLTSET 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V++ + + I +++ + A+ G I Q+PPMFSA+KV
Sbjct: 64 KTYEGEVTLGFSTTTEDASGEVVETKHVDRVITRKEVEEVLAALTGTIEQMPPMFSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQ-------NLIFRVTCSKGTYIRS 482
G+K+Y+ AR G+ +E R I+I +F + L+DR+ + FRVTCSKGTY+R+
Sbjct: 124 NGKKLYEYARAGQEVERPVRTITIHEFVL---LDDREVFEGENISFRFRVTCSKGTYVRT 180
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
L G+ LG +H++ L R + G++ +D F+E+EE +
Sbjct: 181 LAVMIGEKLGFPSHMSHLVRTASGEFLLEDCISFEEIEENV 221
>gi|49478389|ref|YP_037871.1| tRNA pseudouridine synthase B [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|118479030|ref|YP_896181.1| tRNA pseudouridine synthase B [Bacillus thuringiensis str. Al
Hakam]
gi|225865789|ref|YP_002751167.1| tRNA pseudouridine synthase B [Bacillus cereus 03BB102]
gi|301055300|ref|YP_003793511.1| tRNA pseudouridine synthase B [Bacillus cereus biovar anthracis
str. CI]
gi|376267704|ref|YP_005120416.1| tRNA pseudouridine synthase B [Bacillus cereus F837/76]
gi|54036479|sp|Q6HF05.1|TRUB_BACHK RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|189030157|sp|A0RHI1.1|TRUB_BACAH RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|49329945|gb|AAT60591.1| tRNA pseudouridine synthase B [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|118418255|gb|ABK86674.1| tRNA pseudouridine synthase B [Bacillus thuringiensis str. Al
Hakam]
gi|225786358|gb|ACO26575.1| tRNA pseudouridine synthase B [Bacillus cereus 03BB102]
gi|300377469|gb|ADK06373.1| tRNA pseudouridine synthase B [Bacillus cereus biovar anthracis
str. CI]
gi|364513504|gb|AEW56903.1| tRNA pseudouridine synthase B [Bacillus cereus F837/76]
Length = 307
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 90/221 (40%), Positives = 139/221 (62%), Gaps = 11/221 (4%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+VL++KPKG TS KLR++++ K++GH GTLDP TG+L +CVG+ATK+
Sbjct: 4 VVLLHKPKGMTSHDCVFKLRKILREKRIGHTGTLDPDVTGVLPICVGRATKIAQFLTSET 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V++ + + I +++ A A+ G I Q+PPMFSA+KV
Sbjct: 64 KTYEGEVTLGFSTTTEDASGEVVETKHVDRVITRKEVEGALAALTGTIEQMPPMFSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQ-------NLIFRVTCSKGTYIRS 482
G+K+Y+ AR G+ +E R I+I +F + L+DR+ + FRVTCSKGTY+R+
Sbjct: 124 NGKKLYEYARAGQEVERPVRTITIHEFVL---LDDREVFEGETISFRFRVTCSKGTYVRT 180
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
L G+ LG +H++ L R + G++ +D F+E+EE +
Sbjct: 181 LAVMIGEKLGFPSHMSHLVRTASGEFLLEDCISFEEIEENV 221
>gi|282877727|ref|ZP_06286542.1| tRNA pseudouridine synthase B [Prevotella buccalis ATCC 35310]
gi|281300299|gb|EFA92653.1| tRNA pseudouridine synthase B [Prevotella buccalis ATCC 35310]
Length = 236
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 90/219 (41%), Positives = 128/219 (58%), Gaps = 6/219 (2%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVK------KVGHAGTLDPMATGLLIVCVGKATKL 362
G + ++KP G TSF +R ++ K K+GHAGTLDP+ATG+L++C GKATK
Sbjct: 6 GEIFAIDKPYGMTSFGALAHVRYVISRKLGIKRIKIGHAGTLDPLATGVLVLCTGKATKQ 65
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
+++ Q K Y+ +LG T+++D + V Q P EHI E I +A F G+I Q PP
Sbjct: 66 IEQLQAHDKEYTCTLQLGATTASYDKEHEVNQTFPTEHITRERIDEALKQFVGDIQQTPP 125
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRS 482
FSA KV GE+ Y+ R GE + L P+ + I + ++ L RV C KGTYIR+
Sbjct: 126 TFSACKVDGERSYNLRRAGEEVVLKPKSVRIDEIEVMDFDPTTMLLQLRVVCGKGTYIRA 185
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
L D G+AL S A+LTALRR +G +++ F +E
Sbjct: 186 LARDLGRALDSGAYLTALRRTRVGAIKVENSINFDHFKE 224
>gi|228960026|ref|ZP_04121690.1| tRNA pseudouridine synthase B [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|423628903|ref|ZP_17604652.1| tRNA pseudouridine synthase B [Bacillus cereus VD154]
gi|228799542|gb|EEM46495.1| tRNA pseudouridine synthase B [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|401268448|gb|EJR74496.1| tRNA pseudouridine synthase B [Bacillus cereus VD154]
Length = 307
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 90/221 (40%), Positives = 137/221 (61%), Gaps = 11/221 (4%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+VL++KPKG TS KLR++++ K++GH GTLDP TG+L +CVG+ATK+
Sbjct: 4 VVLLHKPKGMTSHDCVFKLRKILREKRIGHTGTLDPDVTGVLPICVGRATKIAQFLTSET 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V++ + I +++ K A G I Q+PPMFSA+KV
Sbjct: 64 KTYEGEVTLGFSTTTEDASGEVVETKNVNRTITRKEVEKVLAELTGTIEQMPPMFSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQ-------NLIFRVTCSKGTYIRS 482
G+K+Y+ AR G+ +E R I+I +F + L+DR+ + FRVTCSKGTY+R+
Sbjct: 124 NGKKLYEYARAGQEVERPVRTITIHEFVL---LDDREVFEGENISFRFRVTCSKGTYVRT 180
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
L G+ LG +H++ L R + G++ +D F+E+EE +
Sbjct: 181 LAVMIGEKLGFPSHMSHLVRTASGEFLLEDCISFEEIEENV 221
>gi|23099056|ref|NP_692522.1| tRNA-pseudouridine 5S synthase [Oceanobacillus iheyensis HTE831]
gi|37088493|sp|Q8CXG9.1|TRUB_OCEIH RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|22777284|dbj|BAC13557.1| tRNA-pseudouridine 5S synthase [Oceanobacillus iheyensis HTE831]
Length = 303
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 86/210 (40%), Positives = 124/210 (59%), Gaps = 1/210 (0%)
Query: 316 KPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSG 375
KPKG TS + RR K KKVGH GTLDP G+L +C+G+ATK+V K Y
Sbjct: 9 KPKGLTSHDCVMRCRRYFKTKKVGHTGTLDPEVEGVLPICIGQATKIVPFLTDTKKVYEA 68
Query: 376 VFRLGEATSTWDADSPVIQ-REPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEKM 434
+LG +T T DA +++ +E + ++++ + +F G Q+PPM+SA+KV G+K+
Sbjct: 69 TVQLGYSTETEDATGKIVETKEVSDFPTNKNLEEVLQTFIGRTKQIPPMYSAVKVNGKKL 128
Query: 435 YDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKALGSC 494
Y+ AR ES+E R I IF+ + E + R+ CSKGTYIR+LC D GKALG
Sbjct: 129 YEYARANESVERPVREIEIFELTLTSVDEKNHSFDIRIVCSKGTYIRTLCVDIGKALGYP 188
Query: 495 AHLTALRRDSIGQYSADDAWEFKELEEAIT 524
AH++ L R G +S + F +EEA++
Sbjct: 189 AHMSLLTRTKTGAFSEKNTVTFDMIEEAVS 218
>gi|392957563|ref|ZP_10323086.1| tRNA pseudouridine 5S synthase [Bacillus macauensis ZFHKF-1]
gi|391876526|gb|EIT85123.1| tRNA pseudouridine 5S synthase [Bacillus macauensis ZFHKF-1]
Length = 306
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 90/216 (41%), Positives = 129/216 (59%), Gaps = 5/216 (2%)
Query: 316 KPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSG 375
KP G TS +LR+L+K KKVGH GTLDP +G+L +C+G+ATK+ K Y
Sbjct: 13 KPAGMTSHDCVARLRKLLKTKKVGHTGTLDPEVSGVLPICIGRATKVAQYMSDYPKAYEA 72
Query: 376 VFRLGEATSTWDADSPVIQREPW-EHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEKM 434
+G +T+T DA ++ + E ++ D+ + A+SF GEI QVPPM+SA+KV G+K+
Sbjct: 73 EVTVGWSTTTEDAHGEKVEEQSVPEGLELVDVVRVASSFVGEIKQVPPMYSAVKVNGKKL 132
Query: 435 YDKARRGESIELSPRRISIFQFDIERSLEDR----QNLIFRVTCSKGTYIRSLCADFGKA 490
Y AR G +E R+ +IF+ + + F V+CSKGTYIR+L D GKA
Sbjct: 133 YQYAREGIEVERPVRQATIFELSVTTTASHLPGPDPTFSFFVSCSKGTYIRTLAVDMGKA 192
Query: 491 LGSCAHLTALRRDSIGQYSADDAWEFKELEEAITKN 526
LG AH++ LRR S G + +D F+E+EE I +
Sbjct: 193 LGYPAHMSHLRRTSSGPFKLEDCLTFEEIEERIAAD 228
>gi|291302565|ref|YP_003513843.1| tRNA pseudouridine synthase B [Stackebrandtia nassauensis DSM
44728]
gi|290571785|gb|ADD44750.1| tRNA pseudouridine synthase B [Stackebrandtia nassauensis DSM
44728]
Length = 310
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 91/210 (43%), Positives = 124/210 (59%), Gaps = 2/210 (0%)
Query: 312 VLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIK 371
V+V+KP TS V ++RRL K +KVGH GTLDPMATG+L++ VG+ T+L+ G K
Sbjct: 23 VVVDKPPAMTSHDVVARMRRLAKTRKVGHGGTLDPMATGVLVLAVGRITRLLTYVTGCDK 82
Query: 372 GYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGG 431
Y RLG+AT T DA+ V + + DI A RGEI QVP SAIKV G
Sbjct: 83 AYQATIRLGQATVTDDAEGEVTATADTAAVTEADIYAALEPMRGEIEQVPSAVSAIKVNG 142
Query: 432 EKMYDKARRGESIELSPRRISIFQFDIERSL--EDRQNLIFRVTCSKGTYIRSLCADFGK 489
++ Y + R GE ++L+ R ++I + D+ ED ++ V CS GTYIR++ D G
Sbjct: 143 QRAYKRVRDGEDVQLAARPVTISRLDVTAIARGEDHLDVDVSVDCSSGTYIRAIARDLGA 202
Query: 490 ALGSCAHLTALRRDSIGQYSADDAWEFKEL 519
ALG HLTALRR +G ++ +A EL
Sbjct: 203 ALGVGGHLTALRRTRVGGFTLAEARTLDEL 232
>gi|229197920|ref|ZP_04324636.1| tRNA pseudouridine synthase B [Bacillus cereus m1293]
gi|423574584|ref|ZP_17550703.1| tRNA pseudouridine synthase B [Bacillus cereus MSX-D12]
gi|423604563|ref|ZP_17580456.1| tRNA pseudouridine synthase B [Bacillus cereus VD102]
gi|228585638|gb|EEK43740.1| tRNA pseudouridine synthase B [Bacillus cereus m1293]
gi|401212109|gb|EJR18855.1| tRNA pseudouridine synthase B [Bacillus cereus MSX-D12]
gi|401245183|gb|EJR51541.1| tRNA pseudouridine synthase B [Bacillus cereus VD102]
Length = 307
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 89/221 (40%), Positives = 139/221 (62%), Gaps = 11/221 (4%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+VL++KPKG TS KLR++++ K++GH GTLDP TG+L +CVG+ATK+
Sbjct: 4 VVLLHKPKGMTSHDCVFKLRKILREKRIGHTGTLDPDVTGVLPICVGRATKIAQFLTSET 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V++ + + I +++ + A+ G I Q+PPMFSA+KV
Sbjct: 64 KTYEGEVTLGFSTTTEDASGEVVETKHVDRVITRKEVEEVLAALTGTIEQMPPMFSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQ-------NLIFRVTCSKGTYIRS 482
G+K+Y+ AR G+ +E R I+I +F + L+DR+ + FRVTCSKGTY+R+
Sbjct: 124 NGKKLYEYARAGQEVERPVRTITIHEFVL---LDDREVFEGENISFRFRVTCSKGTYVRT 180
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
L G+ LG +H++ L R + G++ +D F+E+EE +
Sbjct: 181 LAVMIGEKLGFPSHMSHLVRTASGEFVLEDCISFEEIEENV 221
>gi|444919479|ref|ZP_21239499.1| tRNA pseudouridine synthase B [Cystobacter fuscus DSM 2262]
gi|444708421|gb|ELW49487.1| tRNA pseudouridine synthase B [Cystobacter fuscus DSM 2262]
Length = 289
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 89/209 (42%), Positives = 130/209 (62%), Gaps = 2/209 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++++KPKG TSF V ++R L++VKKVGH GTLDPMATG+L +C+G+ATK+
Sbjct: 4 VLVIDKPKGPTSFDVVRQVRGLLRVKKVGHTGTLDPMATGVLPLCLGEATKVAGFITEGD 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y V RLG T T DA+ V+ P + + FRG QVPPM+SA+KVG
Sbjct: 64 KAYDAVVRLGAETDTQDAEGKVVAEAPVPPLTASLLEDVLGRFRGTFEQVPPMYSAVKVG 123
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKA 490
G+++Y+ AR GE +E + R++++++ + R Q L V CSKG ++R+L D G+A
Sbjct: 124 GKRLYELARAGEEVERASRQVTVYEL-VLRDFNATQ-LHLSVRCSKGFFVRTLAYDVGRA 181
Query: 491 LGSCAHLTALRRDSIGQYSADDAWEFKEL 519
LG AHL ALRR + G +S A ++
Sbjct: 182 LGCGAHLEALRRTASGPFSLAHALPLADV 210
>gi|424827585|ref|ZP_18252372.1| tRNA pseudouridine synthase B [Clostridium sporogenes PA 3679]
gi|365980025|gb|EHN16066.1| tRNA pseudouridine synthase B [Clostridium sporogenes PA 3679]
Length = 289
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 93/215 (43%), Positives = 129/215 (60%), Gaps = 3/215 (1%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
V KPKG TSF V +R++ K+KKVGH GTLDP+A+G+L VC+GKATK+VD K Y
Sbjct: 7 VLKPKGITSFDVVRDIRKIAKIKKVGHTGTLDPLASGVLPVCIGKATKIVDYIMEGTKTY 66
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEK 433
+LG T T+D + V++ E + ++ KA ++G I QVPPM+SA+K+ G+K
Sbjct: 67 RVEMKLGTTTDTYDREGTVLE-EKEVSVSSIEVEKAIEKYKGNIEQVPPMYSALKINGQK 125
Query: 434 MYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKALGS 493
+YD AR+G +E R+I I I D +IF V CSKGTYIRSLC D G LGS
Sbjct: 126 LYDLARKGIEVEREARKIQIHDICILSI--DLPYIIFDVKCSKGTYIRSLCFDIGNDLGS 183
Query: 494 CAHLTALRRDSIGQYSADDAWEFKELEEAITKNYF 528
A + L R ++ +A + ++L E K +
Sbjct: 184 GAVMWNLERLEASPFNIKEAIKLEDLNEENIKQFI 218
>gi|187778992|ref|ZP_02995465.1| hypothetical protein CLOSPO_02587 [Clostridium sporogenes ATCC
15579]
gi|187772617|gb|EDU36419.1| tRNA pseudouridine synthase B [Clostridium sporogenes ATCC 15579]
Length = 289
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 94/215 (43%), Positives = 129/215 (60%), Gaps = 3/215 (1%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
V KPKG TSF V +R++ K+KKVGH GTLDP+A+G+L VC+GKATK+VD K Y
Sbjct: 7 VLKPKGITSFDVVRDIRKIAKIKKVGHTGTLDPLASGVLPVCIGKATKIVDYIMEGTKTY 66
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEK 433
+LG T T+D + V++ E + ++ KA ++G+I QVPPM+SA+KV G K
Sbjct: 67 RVEMKLGTTTDTYDREGTVLE-EKEVSVSPTEVEKAIEKYKGDIKQVPPMYSALKVNGRK 125
Query: 434 MYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKALGS 493
+YD AR+G +E R+I I I D +IF V CSKGTYIRSLC D G LGS
Sbjct: 126 LYDLARKGIEVEREARKIQIHDICILSI--DMPYIIFDVKCSKGTYIRSLCFDIGNDLGS 183
Query: 494 CAHLTALRRDSIGQYSADDAWEFKELEEAITKNYF 528
A + L R ++ +A + ++L E K +
Sbjct: 184 GAVMWNLERLEASPFNIKEAIKLEDLNEENIKQFI 218
>gi|110799626|ref|YP_696370.1| tRNA pseudouridine synthase B [Clostridium perfringens ATCC 13124]
gi|168211429|ref|ZP_02637054.1| tRNA pseudouridine synthase B [Clostridium perfringens B str. ATCC
3626]
gi|122958821|sp|Q0TPS0.1|TRUB_CLOP1 RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|110674273|gb|ABG83260.1| tRNA pseudouridine synthase B [Clostridium perfringens ATCC 13124]
gi|170710557|gb|EDT22739.1| tRNA pseudouridine synthase B [Clostridium perfringens B str. ATCC
3626]
Length = 294
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 88/215 (40%), Positives = 128/215 (59%), Gaps = 1/215 (0%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
+ K G TSF V +RR+ K+KKVGH GTLDP A+G+L VC+GKATK++D K Y
Sbjct: 7 IYKNTGMTSFDVVAIVRRVAKMKKVGHTGTLDPAASGVLPVCLGKATKIIDYIMENKKVY 66
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEK 433
+LG T T+D + V++ E HI ++I SF G I QVPPM+SA+K G +
Sbjct: 67 RVNLKLGMVTDTYDLEGEVLREEDASHITKDEILNCINSFLGTIDQVPPMYSALKQNGVR 126
Query: 434 MYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKALGS 493
+Y+ AR+G + R+I+I+ + +E N+ V CSKGTYIRSLC D G+ L
Sbjct: 127 LYELARQGIEVHREARKITIYSIE-NIKIESNDNIQMDVCCSKGTYIRSLCYDIGEKLNV 185
Query: 494 CAHLTALRRDSIGQYSADDAWEFKELEEAITKNYF 528
A +TAL R G ++ ++A ++L E + + +
Sbjct: 186 GATMTALERIQNGTFTKEEAINIEDLTEELLEKHI 220
>gi|386333732|ref|YP_006029903.1| trna pseudouridine synthase b protein [Ralstonia solanacearum Po82]
gi|334196182|gb|AEG69367.1| trna pseudouridine synthase b protein [Ralstonia solanacearum Po82]
Length = 314
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 98/224 (43%), Positives = 131/224 (58%), Gaps = 5/224 (2%)
Query: 301 PPTWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKAT 360
PP D ++L++KP GW+S + +RL+ KK GH GTLDP+ATGLL +C G+AT
Sbjct: 12 PPRHD--VHGVLLLDKPIGWSSNDALIRAKRLLWAKKAGHTGTLDPLATGLLPLCFGEAT 69
Query: 361 KLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQV 420
K K Y V RLG TST DA+ V+ P + E +R A F GEI QV
Sbjct: 70 KFSQDLLEADKTYETVVRLGIKTSTADAEGEVLSERPVA-VTPEQLRAAVDRFIGEIDQV 128
Query: 421 PPMFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQ--NLIFRVTCSKGT 478
PPM SA+K G+ +Y+ AR G+++E + RR++I D+ + D + RV CSKGT
Sbjct: 129 PPMHSALKKDGKPLYEYARAGQTVERAARRVTIRAIDVLATDLDAAAPTVTLRVCCSKGT 188
Query: 479 YIRSLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEA 522
YIR+L D G+ALG AHL ALRR +G + D A + LE A
Sbjct: 189 YIRTLGEDLGEALGCGAHLVALRRTQVGSLTLDGAVTLQALEAA 232
>gi|325269368|ref|ZP_08135985.1| tRNA pseudouridine synthase B [Prevotella multiformis DSM 16608]
gi|324988289|gb|EGC20255.1| tRNA pseudouridine synthase B [Prevotella multiformis DSM 16608]
Length = 233
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 87/217 (40%), Positives = 126/217 (58%), Gaps = 5/217 (2%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVK-----KVGHAGTLDPMATGLLIVCVGKATKLV 363
G ++ ++KP G TSF +R L K+GHAGTLDP+ATG+LI+ G+ TK +
Sbjct: 6 GVIIPIDKPYGITSFKALAHIRYLCTQANDGKVKIGHAGTLDPLATGVLILATGRMTKQI 65
Query: 364 DRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPM 423
+ Q K Y+ F+LG T ++D + V P EHI E I A F G+I Q+PP
Sbjct: 66 ETLQAHTKEYTATFQLGATTPSYDMEHEVNGTFPTEHITRELIDATLARFVGDIEQIPPT 125
Query: 424 FSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSL 483
+SA+KV G++ +D R GE + L P+ I I + ++ ++ L RV C KGTYIR+L
Sbjct: 126 YSAVKVDGKRAFDYRRNGEDVVLKPKHIHIDKIEVLHFDAEKMQLTVRVVCGKGTYIRAL 185
Query: 484 CADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELE 520
DFG+AL S A+LTALRR +G ++ ++ E
Sbjct: 186 ARDFGRALDSGAYLTALRRTRVGDVQVENCISYERFE 222
>gi|228986953|ref|ZP_04147079.1| tRNA pseudouridine synthase B [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|228772731|gb|EEM21171.1| tRNA pseudouridine synthase B [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
Length = 307
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 89/221 (40%), Positives = 139/221 (62%), Gaps = 11/221 (4%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+VL++KPKG TS KLR++++ K++GH GTLDP TG+L +CVG+ATK+
Sbjct: 4 VVLLHKPKGMTSHDCVFKLRKILREKRIGHTGTLDPDVTGVLPICVGRATKIAQFLTSET 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V++ + + I +++ + A+ G I Q+PPMFSA+KV
Sbjct: 64 KTYEGEVTLGFSTTTEDASGEVVETKHVDRVITRKEVEEVLAALTGTIEQMPPMFSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQ-------NLIFRVTCSKGTYIRS 482
G+K+Y+ AR G+ +E R I+I +F + L+DR+ + FRVTCSKGTY+R+
Sbjct: 124 NGKKLYEYARAGQEVERPVRTITIHEFVL---LDDREVFEGENISFRFRVTCSKGTYVRT 180
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
L G+ LG +H++ L R + G++ +D F+E+EE +
Sbjct: 181 LAVMIGEKLGFPSHMSHLVRTASGEFLLEDCISFEEIEENV 221
>gi|212639518|ref|YP_002316038.1| tRNA pseudouridine synthase [Anoxybacillus flavithermus WK1]
gi|212560998|gb|ACJ34053.1| tRNA pseudouridine synthase [Anoxybacillus flavithermus WK1]
Length = 314
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 89/221 (40%), Positives = 133/221 (60%), Gaps = 11/221 (4%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L++KP G TS ++R+L + KKVGH GTLDP +G+L +C+GKATK+V+
Sbjct: 20 VLLLHKPAGMTSHDCVMRIRKLFQTKKVGHTGTLDPDVSGVLPICIGKATKIVELLTAEK 79
Query: 371 KGYSGVFRLGEATSTWDADSPVIQ-REPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG AT+T DA ++ ++ I +I + A GEI Q+PPM+SA+KV
Sbjct: 80 KTYEGEVTLGIATTTEDASGDIVSIKQIGRPITRHEIERVFAELTGEIEQIPPMYSAVKV 139
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLI-------FRVTCSKGTYIRS 482
G+K+Y+ AR G IE R + I++ + L+DRQ + FRVTCSKGTY+R+
Sbjct: 140 NGKKLYEYARAGIDIERPKRHVHIYELQL---LDDRQMFVGERISFRFRVTCSKGTYVRT 196
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
L G+ LG AH++ L R + G ++ D F ++E+ I
Sbjct: 197 LAVQIGEHLGYPAHMSHLVRTASGSFTLDQCVTFDDIEQHI 237
>gi|389794726|ref|ZP_10197872.1| tRNA pseudouridine synthase B [Rhodanobacter fulvus Jip2]
gi|388431940|gb|EIL88980.1| tRNA pseudouridine synthase B [Rhodanobacter fulvus Jip2]
Length = 317
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 90/212 (42%), Positives = 124/212 (58%), Gaps = 2/212 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+VL++KP G +S RRL + K GHAG LDP+ATGLL +C G+ATKL G
Sbjct: 4 IVLLDKPMGVSSNQALQSARRLFRAAKGGHAGALDPLATGLLPLCFGEATKLAGTLLGSR 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y RLG T T D + V+Q+ P + D I A A RG I QVPPM+SA+K
Sbjct: 64 KAYIAECRLGVTTDTADREGEVLQQHPVPPLDDAMIEAALAKLRGRILQVPPMYSALKRD 123
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKA 490
GE++Y+KARRGE++E+ PR + + Q +++ +D L+ V C GTY+R+L G
Sbjct: 124 GERLYEKARRGETVEVEPREVDVHQLELQARTDDTLQLL--VECGSGTYVRALATALGDD 181
Query: 491 LGSCAHLTALRRDSIGQYSADDAWEFKELEEA 522
LG AHL ALRR I + ++L++A
Sbjct: 182 LGCGAHLIALRRTWIEPFREPRMVTLEDLQQA 213
>gi|421872747|ref|ZP_16304364.1| tRNA pseudouridine synthase B [Brevibacillus laterosporus GI-9]
gi|372458162|emb|CCF13913.1| tRNA pseudouridine synthase B [Brevibacillus laterosporus GI-9]
Length = 310
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 90/221 (40%), Positives = 130/221 (58%), Gaps = 5/221 (2%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQG 368
G +VL +KP G TS K+RR+ + KKVGH GTLDP TG+L +C+ AT++V+ Q
Sbjct: 7 GVLVL-HKPAGMTSHDCVAKIRRIFQTKKVGHTGTLDPDVTGVLPICINNATRIVEYLQE 65
Query: 369 MIKGYSGVFRLGEATSTWDADSPVIQREPWEH--IKDEDIRKAAASFRGEIWQVPPMFSA 426
+ K Y V R+G T+T DA V++ + I E + +A G I Q PPM+SA
Sbjct: 66 LPKAYEVVMRIGSTTTTEDASGEVVETAKVDAATITRERVEEAMKEMLGVIEQTPPMYSA 125
Query: 427 IKVGGEKMYDKARRGESIELSPRRISIFQFDIER--SLEDRQNLIFRVTCSKGTYIRSLC 484
IKV G+++YD AR G +IE R ++I++ + S D ++ F CSKGTY+R+LC
Sbjct: 126 IKVNGQRLYDLAREGITIERKAREVTIYELQLHHIESNADYVDVSFYCLCSKGTYMRTLC 185
Query: 485 ADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAITK 525
D G+ LG AH+ L R G ++ A F+ELE ++ K
Sbjct: 186 VDLGQKLGYPAHMAKLVRVKSGPFTMQHAHTFEELEASMNK 226
>gi|421888446|ref|ZP_16319540.1| tRNA pseudouridine synthase B [Ralstonia solanacearum K60-1]
gi|378966181|emb|CCF96288.1| tRNA pseudouridine synthase B [Ralstonia solanacearum K60-1]
Length = 314
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 95/214 (44%), Positives = 128/214 (59%), Gaps = 3/214 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L++KP GW+S + +RL+ KK GH GTLDP+ATGLL +C G+ATK
Sbjct: 20 VLLLDKPIGWSSNDALIRAKRLLWAKKAGHTGTLDPLATGLLPLCFGEATKFSQDLLEAD 79
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y V RLG TST DA+ V+ P + E +R A F GEI QVPPM SA+K
Sbjct: 80 KTYETVVRLGIKTSTADAEGDVLSERPVA-VTPEQLRAAVGRFIGEIDQVPPMHSALKKD 138
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQ--NLIFRVTCSKGTYIRSLCADFG 488
G+ +Y+ AR G+++E + RR++I D+ + D + RV CSKGTYIR+L D G
Sbjct: 139 GKPLYEYARVGQTVERAARRVTIRAIDVLATDLDAAAPTVTLRVCCSKGTYIRTLGEDLG 198
Query: 489 KALGSCAHLTALRRDSIGQYSADDAWEFKELEEA 522
+ALG AHL ALRR +G + D A + LE A
Sbjct: 199 EALGCGAHLVALRRTQVGSLTLDGAVTLQALEAA 232
>gi|228909634|ref|ZP_04073457.1| tRNA pseudouridine synthase B [Bacillus thuringiensis IBL 200]
gi|228849923|gb|EEM94754.1| tRNA pseudouridine synthase B [Bacillus thuringiensis IBL 200]
Length = 307
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 90/221 (40%), Positives = 138/221 (62%), Gaps = 11/221 (4%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+VL++KPKG TS KLR++++ K++GH GTLDP TG+L +CVG+ATK+
Sbjct: 4 VVLLHKPKGMTSHDCVFKLRKVLREKRIGHTGTLDPDVTGVLPICVGRATKIAQFLTSET 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V++ + + I +++ K A G I Q+PPMFSA+KV
Sbjct: 64 KTYEGEVTLGFSTTTEDASGEVVETKNVDRAITRKEVEKVLAELTGTIEQMPPMFSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQ-------NLIFRVTCSKGTYIRS 482
G+K+Y+ AR G+ +E R I+I +F + L+DR+ + FRVTCSKGTY+R+
Sbjct: 124 NGKKLYEYARAGQEVERPVRTITIHEFVL---LDDREVFEGENISFRFRVTCSKGTYVRT 180
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
L G+ LG +H++ L R + G++ +D F+E+EE +
Sbjct: 181 LAVMIGEKLGFPSHMSHLIRTASGEFLLEDCISFEEIEENV 221
>gi|52141677|ref|YP_085151.1| tRNA pseudouridine synthase B [Bacillus cereus E33L]
gi|62901259|sp|Q636L6.1|TRUB_BACCZ RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|51975146|gb|AAU16696.1| tRNA pseudouridine synthase B (tRNA-pseudouridine synthase I)
[Bacillus cereus E33L]
Length = 307
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 89/221 (40%), Positives = 139/221 (62%), Gaps = 11/221 (4%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+VL++KPKG TS KLR++++ K++GH GTLDP TG+L +CVG+ATK+
Sbjct: 4 VVLLHKPKGMTSHDCVFKLRKILREKRIGHTGTLDPDVTGVLPICVGRATKIAQFLTSET 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V++ + + I +++ +A + G I Q+PPMFSA+KV
Sbjct: 64 KTYEGEVTLGFSTTTEDASGEVVETKHVDRVITRKEVEEALVTLTGTIEQMPPMFSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQ-------NLIFRVTCSKGTYIRS 482
G+K+Y+ AR G+ +E R I+I +F + L+DR+ + FRVTCSKGTY+R+
Sbjct: 124 NGKKLYEYARAGQEVERPVRTITIHEFVL---LDDREVFEGETISFRFRVTCSKGTYVRT 180
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
L G+ LG +H++ L R + G++ +D F+E+EE +
Sbjct: 181 LAVMIGEKLGFPSHMSHLVRTASGEFLLEDCISFEEIEENV 221
>gi|229047496|ref|ZP_04193086.1| tRNA pseudouridine synthase B [Bacillus cereus AH676]
gi|229111281|ref|ZP_04240834.1| tRNA pseudouridine synthase B [Bacillus cereus Rock1-15]
gi|229129086|ref|ZP_04258059.1| tRNA pseudouridine synthase B [Bacillus cereus BDRD-Cer4]
gi|229146381|ref|ZP_04274752.1| tRNA pseudouridine synthase B [Bacillus cereus BDRD-ST24]
gi|296504305|ref|YP_003666005.1| tRNA pseudouridine synthase B [Bacillus thuringiensis BMB171]
gi|423585781|ref|ZP_17561868.1| tRNA pseudouridine synthase B [Bacillus cereus VD045]
gi|423641109|ref|ZP_17616727.1| tRNA pseudouridine synthase B [Bacillus cereus VD166]
gi|423649673|ref|ZP_17625243.1| tRNA pseudouridine synthase B [Bacillus cereus VD169]
gi|37088205|sp|Q812X9.2|TRUB_BACCR RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|228637014|gb|EEK93473.1| tRNA pseudouridine synthase B [Bacillus cereus BDRD-ST24]
gi|228654323|gb|EEL10188.1| tRNA pseudouridine synthase B [Bacillus cereus BDRD-Cer4]
gi|228672057|gb|EEL27348.1| tRNA pseudouridine synthase B [Bacillus cereus Rock1-15]
gi|228723743|gb|EEL75098.1| tRNA pseudouridine synthase B [Bacillus cereus AH676]
gi|296325357|gb|ADH08285.1| tRNA pseudouridine synthase B [Bacillus thuringiensis BMB171]
gi|401233127|gb|EJR39623.1| tRNA pseudouridine synthase B [Bacillus cereus VD045]
gi|401280170|gb|EJR86092.1| tRNA pseudouridine synthase B [Bacillus cereus VD166]
gi|401282953|gb|EJR88850.1| tRNA pseudouridine synthase B [Bacillus cereus VD169]
Length = 307
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 90/221 (40%), Positives = 137/221 (61%), Gaps = 11/221 (4%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+VL++KPKG TS KLR++++ K++GH GTLDP TG+L +CVG+ATK+
Sbjct: 4 VVLLHKPKGMTSHDCVFKLRKILREKRIGHTGTLDPDVTGVLPICVGRATKIAQFLTSET 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V++ + + I ++ K A G I Q+PPMFSA+KV
Sbjct: 64 KTYEGEVTLGFSTTTEDASGEVVETKNVDRTITRMEVEKVLAELTGTIEQMPPMFSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQ-------NLIFRVTCSKGTYIRS 482
G+K+Y+ AR G+ +E R I+I +F + L+DR+ + FRVTCSKGTY+R+
Sbjct: 124 NGKKLYEYARAGQEVERPVRTITIHEFVL---LDDREVFEGENISFRFRVTCSKGTYVRT 180
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
L G+ LG +H++ L R + G++ +D F+E+EE +
Sbjct: 181 LAVMIGEKLGFPSHMSHLVRTASGEFLLEDCISFEEIEENV 221
>gi|375293343|ref|YP_005127882.1| tRNA pseudouridine synthase B [Corynebacterium diphtheriae INCA
402]
gi|371583014|gb|AEX46680.1| tRNA pseudouridine synthase B [Corynebacterium diphtheriae INCA
402]
Length = 300
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 93/219 (42%), Positives = 128/219 (58%), Gaps = 11/219 (5%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP+G TS V K+RR KKVGHAGTLDPMATG+L++ + + TK +
Sbjct: 10 LVIVDKPQGMTSHDVVSKIRRTFSTKKVGHAGTLDPMATGVLVLGLERGTKFLAHMVAST 69
Query: 371 KGYSGVFRLGEATSTWDADSPVIQR---EPWEHIKDEDIRKAAASFRGEIWQVPPMFSAI 427
K Y+ RLG AT+T D + I + I + I A FRG I Q P SAI
Sbjct: 70 KSYTATIRLGAATTTDDREGETITSASPDQLAGITETKISDAVKQFRGSIMQRPAAVSAI 129
Query: 428 KVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIF-----RVTCSKGTYIRS 482
K+ G++ + + R GE +E+ R ++I ++DI LE R++ F V CS GTYIRS
Sbjct: 130 KIDGKRAHQRVREGEKVEIPARPVTISRYDI---LEIRRDAAFIDIDVEVDCSSGTYIRS 186
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
L D GK LG HLTALRR +G ++ D+A ++LEE
Sbjct: 187 LARDLGKELGVGGHLTALRRTQVGPFTLDNAVTLEKLEE 225
>gi|334134194|ref|ZP_08507706.1| tRNA pseudouridine synthase B [Paenibacillus sp. HGF7]
gi|333608276|gb|EGL19578.1| tRNA pseudouridine synthase B [Paenibacillus sp. HGF7]
Length = 311
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 86/208 (41%), Positives = 126/208 (60%), Gaps = 2/208 (0%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
+ KPKG TS V K RR + +K++GH GTLDP TG+L +C+G+AT++V+ Q + K Y
Sbjct: 9 ILKPKGMTSHDVVAKARRFLGIKRIGHTGTLDPEVTGVLPLCIGRATRMVEYIQELPKQY 68
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEK 433
G AT T D V++ P + ++ +R SF GEI QVPPM+SA+KV G++
Sbjct: 69 EAAVVFGLATDTEDLSGNVLEEIPLVQLAEDKVRSVIQSFVGEISQVPPMYSAVKVDGKR 128
Query: 434 MYDKARRGESIELSPRRISIFQFD-IERSL-EDRQNLIFRVTCSKGTYIRSLCADFGKAL 491
+Y+ AR G +E R ++I++ + +E L D + FRV CSKGTYIR+LC D G+AL
Sbjct: 129 LYELARAGVEVERKARNVTIYEIELLELDLNRDHPEVRFRVLCSKGTYIRTLCVDIGRAL 188
Query: 492 GSCAHLTALRRDSIGQYSADDAWEFKEL 519
G A + L R S G+ + ++L
Sbjct: 189 GVPAAMKELVRSSTGRIGLEQCVALEDL 216
>gi|410456929|ref|ZP_11310776.1| tRNA pseudouridine synthase B [Bacillus bataviensis LMG 21833]
gi|409926903|gb|EKN64054.1| tRNA pseudouridine synthase B [Bacillus bataviensis LMG 21833]
Length = 305
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 91/214 (42%), Positives = 132/214 (61%), Gaps = 11/214 (5%)
Query: 316 KPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSG 375
KP G TS KLR+++K KKVGH GTLDP TG+L +CVGKATK+ + K Y G
Sbjct: 9 KPAGLTSHDCVFKLRKILKTKKVGHTGTLDPDVTGVLPICVGKATKVAEYITDAGKAYEG 68
Query: 376 VFRLGEATSTWDADSPVIQREPWEHIKDED-IRKAAASFRGEIWQVPPMFSAIKVGGEKM 434
LG +T+T DA V++R+ + I D I + S GEI Q PPMFSA+KVGG ++
Sbjct: 69 EVTLGFSTTTEDASGEVVERKSVDRIISRDEIMEILKSLTGEIEQTPPMFSAVKVGGVRL 128
Query: 435 YDKARRGESIELSPRRISIFQFDIERSLEDRQNLI-------FRVTCSKGTYIRSLCADF 487
Y+ AR+G +E R ++I+ ++ L+DR++ + F+V+CSKGTYIR+L
Sbjct: 129 YEYARKGMVVERPTRIVTIYSIEL---LDDREHFLGEEISFRFKVSCSKGTYIRTLAVMI 185
Query: 488 GKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
G+ LG AH++ L+R +S +D F+E+E+
Sbjct: 186 GERLGFPAHMSNLQRVQSATFSLEDCLTFEEIEQ 219
>gi|376284977|ref|YP_005158187.1| tRNA pseudouridine synthase B [Corynebacterium diphtheriae 31A]
gi|376293475|ref|YP_005165149.1| tRNA pseudouridine synthase B [Corynebacterium diphtheriae HC02]
gi|371578492|gb|AEX42160.1| tRNA pseudouridine synthase B [Corynebacterium diphtheriae 31A]
gi|372110798|gb|AEX76858.1| tRNA pseudouridine synthase B [Corynebacterium diphtheriae HC02]
Length = 300
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 93/219 (42%), Positives = 128/219 (58%), Gaps = 11/219 (5%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP+G TS V K+RR KKVGHAGTLDPMATG+L++ + + TK +
Sbjct: 10 LVIVDKPEGMTSHDVVSKIRRTFSTKKVGHAGTLDPMATGVLVLGLERGTKFLAHMVAST 69
Query: 371 KGYSGVFRLGEATSTWDADSPVIQR---EPWEHIKDEDIRKAAASFRGEIWQVPPMFSAI 427
K Y+ RLG AT+T D + I + I + I A FRG I Q P SAI
Sbjct: 70 KSYAATIRLGAATTTDDREGETIASASPDQLAAITETKISDAVKQFRGSIMQRPAAVSAI 129
Query: 428 KVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIF-----RVTCSKGTYIRS 482
K+ G++ + + R GE +E+ R ++I ++DI LE R++ F V CS GTYIRS
Sbjct: 130 KIDGKRAHQRVREGEKVEIPARPVTISRYDI---LEIRRDAAFIDIDVEVDCSSGTYIRS 186
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
L D GK LG HLTALRR +G ++ D+A ++LEE
Sbjct: 187 LARDLGKELGVGGHLTALRRTQVGPFTLDNAVTLEKLEE 225
>gi|386577970|ref|YP_006074376.1| tRNA pseudouridine synthase B [Streptococcus suis GZ1]
gi|292558433|gb|ADE31434.1| tRNA pseudouridine synthase B [Streptococcus suis GZ1]
Length = 298
Score = 172 bits (435), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 87/221 (39%), Positives = 130/221 (58%), Gaps = 3/221 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ V K G TS V KLR++++ KK+GH GTLDP TG+L + VGKAT++++ Q
Sbjct: 11 IINVKKEAGMTSHDVVFKLRKILQEKKIGHGGTLDPYVTGVLPIAVGKATRMIEYMQEEG 70
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y G +G +T+T DA +++R P +I ++ + +A SF G I Q+PPM+SA+KV
Sbjct: 71 KIYEGEITIGYSTTTEDASGDLVERTPVLYIAEQAVDEAMTSFVGTITQIPPMYSAVKVK 130
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLE---DRQNLIFRVTCSKGTYIRSLCADF 487
G K+Y+ AR GE +E R+I I+ F+ +E D FRV C KGTY+R+L D
Sbjct: 131 GRKLYEYARAGEEVERPQRQIEIYSFERTSPIELADDCARFTFRVRCGKGTYVRTLSVDL 190
Query: 488 GKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAITKNYF 528
G LG +H++ L R DA +E+ + +N F
Sbjct: 191 GAKLGYASHMSKLERTGSAGMDLADALTLEEISSLVAENDF 231
>gi|229162746|ref|ZP_04290703.1| tRNA pseudouridine synthase B [Bacillus cereus R309803]
gi|228620628|gb|EEK77497.1| tRNA pseudouridine synthase B [Bacillus cereus R309803]
Length = 307
Score = 172 bits (435), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 88/218 (40%), Positives = 140/218 (64%), Gaps = 5/218 (2%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+VL++KPKG TS KLR++++ K++GH GTLDP TG+L +CVG+ATK+
Sbjct: 4 VVLLHKPKGMTSHDCVFKLRKILREKRIGHTGTLDPDVTGVLPICVGRATKIAQFLTSET 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V++ + + I +++ + A+ G I Q+PPMFSA+KV
Sbjct: 64 KTYEGEVTLGFSTTTEDASGEVVETKNVDRVITRKEVEEVLAALTGTIEQMPPMFSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDI--ERSLEDRQNLI--FRVTCSKGTYIRSLCA 485
G+K+Y+ AR G+ +E R I+I +F + +R + + +N+ FRVTCSKGTY+R+L
Sbjct: 124 NGKKLYEYARAGQEVERPVRTITIHEFVLLDDREVFEGENISFRFRVTCSKGTYVRTLAV 183
Query: 486 DFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
G+ LG +H++ L R + G++ +D F+E+EE +
Sbjct: 184 MIGEKLGFPSHMSHLVRTASGEFLLEDCISFEEIEENV 221
>gi|284030875|ref|YP_003380806.1| tRNA pseudouridine synthase B [Kribbella flavida DSM 17836]
gi|283810168|gb|ADB32007.1| tRNA pseudouridine synthase B [Kribbella flavida DSM 17836]
Length = 299
Score = 172 bits (435), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 95/230 (41%), Positives = 128/230 (55%), Gaps = 9/230 (3%)
Query: 297 STELPPTWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCV 356
+T P DG +V+V+KP G TS TV ++RRL +KVGHAGTLDPMATG+L+V +
Sbjct: 2 TTSEPNVADG----IVVVDKPAGLTSHTVVARIRRLAGTRKVGHAGTLDPMATGILVVGL 57
Query: 357 GKATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPV---IQREPWEHIKDEDIRKAAASF 413
+AT+L+ Q K Y LG T+T DA+ + + E I KA A F
Sbjct: 58 NRATRLLGHLQLADKSYDATVLLGATTTTDDAEGEIQTTASPAALGEVTAEAIEKAVAGF 117
Query: 414 RGEIWQVPPMFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDI--ERSLEDRQNLIFR 471
RG I QVP SAIKV G + Y++ R GE + L R +++ ++D+ RS +
Sbjct: 118 RGRISQVPSKVSAIKVDGRRAYERVRAGEEVALKAREVTVSRYDVLDVRSAAQAIEVDIS 177
Query: 472 VTCSKGTYIRSLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
V CS GTYIR+L D G LG HLT LRR +G + A+ +EL E
Sbjct: 178 VDCSSGTYIRALARDLGVELGVGGHLTMLRRTRVGSFDLSAAYTLEELGE 227
>gi|153812989|ref|ZP_01965657.1| hypothetical protein RUMOBE_03396 [Ruminococcus obeum ATCC 29174]
gi|149830936|gb|EDM86026.1| tRNA pseudouridine synthase B [Ruminococcus obeum ATCC 29174]
Length = 294
Score = 172 bits (435), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 89/210 (42%), Positives = 131/210 (62%), Gaps = 3/210 (1%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
+ K KG+TSF V KLR ++ +KK+GH GTLDP A G+L V +GKATKLVD K Y
Sbjct: 7 IRKEKGYTSFDVVAKLRGILHMKKIGHTGTLDPEAEGVLPVVLGKATKLVDLLTEKQKTY 66
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEK 433
+ LG T T D V++ +P E + +E++R SF GE Q+PPM+SA+KV G+K
Sbjct: 67 EALLHLGLETDTQDMTGTVLEEKPVE-VTEEEVRTVIRSFLGEQQQIPPMYSALKVDGKK 125
Query: 434 MYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKALGS 493
+Y+ AR G+++E PR + ++ +I++ + + F VTCSKGTYIR+LC D G+ LG
Sbjct: 126 LYELAREGKTVERKPRAVQFYEIEIKKI--ELPYVRFSVTCSKGTYIRTLCHDIGQKLGC 183
Query: 494 CAHLTALRRDSIGQYSADDAWEFKELEEAI 523
+ L R G + +D+ ++EEA+
Sbjct: 184 GGCMEELLRTRSGNFVWEDSMTLAQVEEAV 213
>gi|422874604|ref|ZP_16921089.1| tRNA pseudouridine synthase B [Clostridium perfringens F262]
gi|380304245|gb|EIA16534.1| tRNA pseudouridine synthase B [Clostridium perfringens F262]
Length = 294
Score = 172 bits (435), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 88/215 (40%), Positives = 128/215 (59%), Gaps = 1/215 (0%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
+ K G TSF V +RR+ K+KKVGH GTLDP A+G+L VC+GKATK++D K Y
Sbjct: 7 IYKNTGMTSFDVVAIVRRVAKMKKVGHTGTLDPAASGVLPVCLGKATKIIDYIMENKKVY 66
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEK 433
+LG T T+D + V++ E HI ++I SF G I QVPPM+SA+K G +
Sbjct: 67 RVNLKLGMVTDTYDLEGEVLREEDASHITKDEILNCINSFLGTIDQVPPMYSALKQNGVR 126
Query: 434 MYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKALGS 493
+Y+ AR+G + R+I+I+ + +E N+ V CSKGTYIRSLC D G+ L
Sbjct: 127 LYELARQGIEVHREARKITIYSIE-NIKIESNDNIQMDVCCSKGTYIRSLCYDIGEKLNV 185
Query: 494 CAHLTALRRDSIGQYSADDAWEFKELEEAITKNYF 528
A +TAL R G ++ ++A ++L E + + +
Sbjct: 186 GATMTALERIQNGPFTKEEAINIEDLTEELLEKHI 220
>gi|228940898|ref|ZP_04103457.1| tRNA pseudouridine synthase B [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|228973827|ref|ZP_04134403.1| tRNA pseudouridine synthase B [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228980416|ref|ZP_04140726.1| tRNA pseudouridine synthase B [Bacillus thuringiensis Bt407]
gi|384187867|ref|YP_005573763.1| tRNA pseudouridine synthase B [Bacillus thuringiensis serovar
chinensis CT-43]
gi|410676183|ref|YP_006928554.1| tRNA pseudouridine synthase B [Bacillus thuringiensis Bt407]
gi|423385313|ref|ZP_17362569.1| tRNA pseudouridine synthase B [Bacillus cereus BAG1X1-2]
gi|423528329|ref|ZP_17504774.1| tRNA pseudouridine synthase B [Bacillus cereus HuB1-1]
gi|452200247|ref|YP_007480328.1| tRNA pseudouridine synthase B [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
gi|228779236|gb|EEM27493.1| tRNA pseudouridine synthase B [Bacillus thuringiensis Bt407]
gi|228785852|gb|EEM33855.1| tRNA pseudouridine synthase B [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228818734|gb|EEM64800.1| tRNA pseudouridine synthase B [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|326941576|gb|AEA17472.1| tRNA pseudouridine synthase B [Bacillus thuringiensis serovar
chinensis CT-43]
gi|401635369|gb|EJS53124.1| tRNA pseudouridine synthase B [Bacillus cereus BAG1X1-2]
gi|402451992|gb|EJV83811.1| tRNA pseudouridine synthase B [Bacillus cereus HuB1-1]
gi|409175312|gb|AFV19617.1| tRNA pseudouridine synthase B [Bacillus thuringiensis Bt407]
gi|452105640|gb|AGG02580.1| tRNA pseudouridine synthase B [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
Length = 307
Score = 172 bits (435), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 89/221 (40%), Positives = 138/221 (62%), Gaps = 11/221 (4%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+VL++KPKG TS KLR++++ K++GH GTLDP TG+L +CVG+ATK+
Sbjct: 4 VVLLHKPKGMTSHDCVFKLRKILREKRIGHTGTLDPDVTGVLPLCVGRATKIAQFLTSET 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V++++ I +++ + A G I Q+PPMFSA+KV
Sbjct: 64 KTYEGEVTLGFSTTTEDASGEVVEKQDVNRVITRKEVEEVLAELTGTIEQMPPMFSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQ-------NLIFRVTCSKGTYIRS 482
G+K+Y+ AR G+ +E R I+I +F + L+DR+ + FRVTCSKGTY+R+
Sbjct: 124 NGKKLYEYARAGQEVERPVRTITIHEFVL---LDDREVFEGENISFRFRVTCSKGTYVRT 180
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
L G+ LG +H++ L R + G++ +D F+E+EE +
Sbjct: 181 LAVMIGEKLGFPSHMSHLVRTASGEFLLEDCISFEEIEENV 221
>gi|253751863|ref|YP_003025004.1| tRNA pseudouridine synthase B [Streptococcus suis SC84]
gi|253753686|ref|YP_003026827.1| tRNA pseudouridine synthase B [Streptococcus suis P1/7]
gi|386580026|ref|YP_006076431.1| tRNA pseudouridine synthase B [Streptococcus suis JS14]
gi|386582051|ref|YP_006078455.1| tRNA pseudouridine synthase B [Streptococcus suis SS12]
gi|386588239|ref|YP_006084640.1| tRNA pseudouridine synthase B [Streptococcus suis A7]
gi|251816152|emb|CAZ51776.1| tRNA pseudouridine synthase B [Streptococcus suis SC84]
gi|251819932|emb|CAR46022.1| tRNA pseudouridine synthase B [Streptococcus suis P1/7]
gi|319758218|gb|ADV70160.1| tRNA pseudouridine synthase B [Streptococcus suis JS14]
gi|353734197|gb|AER15207.1| tRNA pseudouridine synthase B [Streptococcus suis SS12]
gi|354985400|gb|AER44298.1| tRNA pseudouridine synthase B [Streptococcus suis A7]
Length = 292
Score = 172 bits (435), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 87/221 (39%), Positives = 130/221 (58%), Gaps = 3/221 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ V K G TS V KLR++++ KK+GH GTLDP TG+L + VGKAT++++ Q
Sbjct: 5 IINVKKEAGMTSHDVVFKLRKILQEKKIGHGGTLDPYVTGVLPIAVGKATRMIEYMQEEG 64
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y G +G +T+T DA +++R P +I ++ + +A SF G I Q+PPM+SA+KV
Sbjct: 65 KIYEGEITIGYSTTTEDASGDLVERTPVLYIAEQAVDEAMTSFVGTITQIPPMYSAVKVK 124
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLE---DRQNLIFRVTCSKGTYIRSLCADF 487
G K+Y+ AR GE +E R+I I+ F+ +E D FRV C KGTY+R+L D
Sbjct: 125 GRKLYEYARAGEEVERPQRQIEIYSFERTSPIELADDCARFTFRVRCGKGTYVRTLSVDL 184
Query: 488 GKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAITKNYF 528
G LG +H++ L R DA +E+ + +N F
Sbjct: 185 GAKLGYASHMSKLERTGSAGMDLADALTLEEISSLVAENDF 225
>gi|262373594|ref|ZP_06066872.1| tRNA pseudouridine synthase B [Acinetobacter junii SH205]
gi|262311347|gb|EEY92433.1| tRNA pseudouridine synthase B [Acinetobacter junii SH205]
Length = 297
Score = 172 bits (435), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 88/210 (41%), Positives = 123/210 (58%), Gaps = 2/210 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+ L+NKP G +S + K+RRL +K GH G LDP+ATGLL +C+G+ATK
Sbjct: 12 VFLLNKPLGLSSNSALQKVRRLFNAQKAGHTGALDPLATGLLPICLGEATKFSHYLLDST 71
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y +LGE T+T D + V+Q+ + +E I + FRG+I QVPPM+SA+K
Sbjct: 72 KRYQTTVKLGETTATGDVEGEVLQQRAVPQLTEETIEQVLTKFRGDIQQVPPMYSALKRE 131
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKA 490
G +Y+ AR+G IE R ++I++ + ED +L VTCSKGTYIR L AD G+A
Sbjct: 132 GRPLYELARKGIEIERDARPVTIYELRLVSFTED--SLTLDVTCSKGTYIRVLGADIGEA 189
Query: 491 LGSCAHLTALRRDSIGQYSADDAWEFKELE 520
LG HLT L R G + + + + LE
Sbjct: 190 LGCGGHLTKLHRVQTGHFEINPNYTIEYLE 219
>gi|333919299|ref|YP_004492880.1| tRNA pseudouridine synthase B [Amycolicicoccus subflavus DQS3-9A1]
gi|333481520|gb|AEF40080.1| tRNA pseudouridine synthase B [Amycolicicoccus subflavus DQS3-9A1]
Length = 295
Score = 172 bits (435), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 93/216 (43%), Positives = 120/216 (55%), Gaps = 2/216 (0%)
Query: 308 FGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQ 367
G +V+++KP G TS V G+ RR+ K +K+GHAGTLDPMATG+L++ V +ATKL+
Sbjct: 4 LGGVVVIDKPGGLTSHDVVGRCRRIFKTRKIGHAGTLDPMATGVLVLGVNRATKLLGLLS 63
Query: 368 GMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAI 427
K Y RLG +TST DA+ V I + + G I QVP SAI
Sbjct: 64 LSTKSYDATIRLGASTSTDDAEGDVTSSADASLITANEYGPTVEALTGTIKQVPSAVSAI 123
Query: 428 KVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVT--CSKGTYIRSLCA 485
KV G + YD R GE +EL+ R + + +F + D L VT CS GTYIR+L
Sbjct: 124 KVAGRRAYDIVRSGEEVELAAREVIVSRFAVHGEHRDGGYLDLDVTVDCSSGTYIRALAR 183
Query: 486 DFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
D G ALG HLT LRR ++G S DA EL E
Sbjct: 184 DLGAALGVGGHLTRLRRTNVGDLSLTDALTLDELAE 219
>gi|375291139|ref|YP_005125679.1| tRNA pseudouridine synthase B [Corynebacterium diphtheriae 241]
gi|376245971|ref|YP_005136210.1| tRNA pseudouridine synthase B [Corynebacterium diphtheriae HC01]
gi|371580810|gb|AEX44477.1| tRNA pseudouridine synthase B [Corynebacterium diphtheriae 241]
gi|372108601|gb|AEX74662.1| tRNA pseudouridine synthase B [Corynebacterium diphtheriae HC01]
Length = 300
Score = 172 bits (435), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 92/219 (42%), Positives = 129/219 (58%), Gaps = 11/219 (5%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP+G TS V K+RR+ KKVGHAGTLDPMATG+L++ + + TK +
Sbjct: 10 LVIVDKPEGMTSHDVVSKIRRIFSTKKVGHAGTLDPMATGVLVLGLERGTKFLAHMVAST 69
Query: 371 KGYSGVFRLGEATSTWDADSPVIQR---EPWEHIKDEDIRKAAASFRGEIWQVPPMFSAI 427
K Y+ RLG AT+T D + I + I + I A FRG I Q P SAI
Sbjct: 70 KSYAATIRLGAATTTDDREGETIASASPDQLAAITETKISDAVKQFRGSIMQRPAAVSAI 129
Query: 428 KVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIF-----RVTCSKGTYIRS 482
K+ G++ + + R GE +E+ R ++I ++DI LE R++ F V CS GTYIRS
Sbjct: 130 KIDGKRAHQRVREGEKVEIPARPVTISRYDI---LEIRRDAAFIDIDVEVDCSSGTYIRS 186
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
L D G+ LG HLTALRR +G ++ D+A ++LEE
Sbjct: 187 LARDLGEELGVGGHLTALRRTQVGPFTLDNAVTLEKLEE 225
>gi|414582323|ref|ZP_11439463.1| tRNA pseudouridine synthase B [Mycobacterium abscessus 5S-1215]
gi|420877967|ref|ZP_15341334.1| tRNA pseudouridine synthase B [Mycobacterium abscessus 5S-0304]
gi|420884312|ref|ZP_15347672.1| tRNA pseudouridine synthase B [Mycobacterium abscessus 5S-0421]
gi|420889633|ref|ZP_15352981.1| tRNA pseudouridine synthase B [Mycobacterium abscessus 5S-0422]
gi|420897444|ref|ZP_15360783.1| tRNA pseudouridine synthase B [Mycobacterium abscessus 5S-0708]
gi|420899440|ref|ZP_15362772.1| tRNA pseudouridine synthase B [Mycobacterium abscessus 5S-0817]
gi|420906443|ref|ZP_15369761.1| tRNA pseudouridine synthase B [Mycobacterium abscessus 5S-1212]
gi|420972847|ref|ZP_15436040.1| tRNA pseudouridine synthase B [Mycobacterium abscessus 5S-0921]
gi|392080075|gb|EIU05901.1| tRNA pseudouridine synthase B [Mycobacterium abscessus 5S-0421]
gi|392082876|gb|EIU08701.1| tRNA pseudouridine synthase B [Mycobacterium abscessus 5S-0304]
gi|392087381|gb|EIU13203.1| tRNA pseudouridine synthase B [Mycobacterium abscessus 5S-0422]
gi|392096756|gb|EIU22551.1| tRNA pseudouridine synthase B [Mycobacterium abscessus 5S-0708]
gi|392100787|gb|EIU26578.1| tRNA pseudouridine synthase B [Mycobacterium abscessus 5S-0817]
gi|392104347|gb|EIU30133.1| tRNA pseudouridine synthase B [Mycobacterium abscessus 5S-1212]
gi|392117475|gb|EIU43243.1| tRNA pseudouridine synthase B [Mycobacterium abscessus 5S-1215]
gi|392165739|gb|EIU91425.1| tRNA pseudouridine synthase B [Mycobacterium abscessus 5S-0921]
Length = 280
Score = 172 bits (435), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 90/208 (43%), Positives = 123/208 (59%), Gaps = 3/208 (1%)
Query: 320 WTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSGVFRL 379
TS V + RR+ +KVGHAGTLDPMATG+L++ + +ATK++ K Y+ R
Sbjct: 1 MTSHDVVSRCRRIFSTRKVGHAGTLDPMATGVLVIGIERATKIMGLLTLTTKSYAATIRF 60
Query: 380 GEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEKMYDKAR 439
G++TST DA+ V+Q H+ + DI A A RG+I QVP SAIKV G++ Y AR
Sbjct: 61 GQSTSTDDAEGEVLQTISASHLTEADIEAAVAGLRGDIAQVPSSVSAIKVDGQRAYKLAR 120
Query: 440 RGESIELSPRRISIFQFD---IERSLEDRQNLIFRVTCSKGTYIRSLCADFGKALGSCAH 496
G+S+EL+ R + I +FD + S E ++ V CS GTYIR+L D G ALG H
Sbjct: 121 EGQSVELAARPVHISRFDVLGVRGSGEGLVDVDVEVDCSSGTYIRALARDAGAALGVGGH 180
Query: 497 LTALRRDSIGQYSADDAWEFKELEEAIT 524
LTALRR +G + D A + L + T
Sbjct: 181 LTALRRTRVGDFGLDRARALEALADEAT 208
>gi|222097254|ref|YP_002531311.1| tRNA pseudouridine synthase b [Bacillus cereus Q1]
gi|221241312|gb|ACM14022.1| tRNA pseudouridine synthase B [Bacillus cereus Q1]
Length = 307
Score = 172 bits (435), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 89/221 (40%), Positives = 139/221 (62%), Gaps = 11/221 (4%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+VL++KPKG TS KLR++++ K++GH GTLDP TG+L +CVG+ATK+
Sbjct: 4 VVLLHKPKGMTSHDCVFKLRKILREKRIGHTGTLDPDVTGVLPICVGRATKIAQFLTSET 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V++ + + I +++ + A+ G I Q+PPMFSA+KV
Sbjct: 64 KTYEGEVTLGFSTTTEDASGEVVETKYVDRVITRKEVEEVLAALTGTIEQMPPMFSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQ-------NLIFRVTCSKGTYIRS 482
G+K+Y+ AR G+ +E R I+I +F + L+DR+ + FRVTCSKGTY+R+
Sbjct: 124 NGKKLYEYARAGQEVERPVRTITIHEFVL---LDDREVFEGENISFRFRVTCSKGTYVRT 180
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
L G+ LG +H++ L R + G++ +D F+E+EE +
Sbjct: 181 LAVMIGEKLGFPSHMSHLVRTASGEFVLEDCISFEEIEENV 221
>gi|228902313|ref|ZP_04066470.1| tRNA pseudouridine synthase B [Bacillus thuringiensis IBL 4222]
gi|434376913|ref|YP_006611557.1| tRNA pseudouridine synthase B [Bacillus thuringiensis HD-789]
gi|228857282|gb|EEN01785.1| tRNA pseudouridine synthase B [Bacillus thuringiensis IBL 4222]
gi|401875470|gb|AFQ27637.1| tRNA pseudouridine synthase B [Bacillus thuringiensis HD-789]
Length = 307
Score = 172 bits (435), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 91/221 (41%), Positives = 137/221 (61%), Gaps = 11/221 (4%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+VL++KPKG TS KLR++++ K++GH GTLDP TG+L +CVG+ATK+
Sbjct: 4 VVLLHKPKGMTSHDCVFKLRKVLREKRIGHTGTLDPDVTGVLPICVGRATKIAQFLTSET 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V++ + + I ++I K A G I Q PPMFSA+KV
Sbjct: 64 KTYEGEVTLGFSTTTEDASGEVVETKNIDRAITRKEIEKVLAELTGTIEQKPPMFSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQ-------NLIFRVTCSKGTYIRS 482
G+K+Y+ AR G+ +E R I+I +F + L+DR+ + FRVTCSKGTY+R+
Sbjct: 124 NGKKLYEYARAGQEVERPVRTITIHEFVL---LDDREVFEGENISFRFRVTCSKGTYVRT 180
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
L G+ LG +H++ L R + G++ +D F+E+EE +
Sbjct: 181 LAVMIGEKLGFPSHMSHLVRTASGEFLLEDCISFEEIEENV 221
>gi|423395891|ref|ZP_17373092.1| tRNA pseudouridine synthase B [Bacillus cereus BAG2X1-1]
gi|423406767|ref|ZP_17383916.1| tRNA pseudouridine synthase B [Bacillus cereus BAG2X1-3]
gi|401653633|gb|EJS71177.1| tRNA pseudouridine synthase B [Bacillus cereus BAG2X1-1]
gi|401660057|gb|EJS77540.1| tRNA pseudouridine synthase B [Bacillus cereus BAG2X1-3]
Length = 307
Score = 172 bits (435), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 89/218 (40%), Positives = 139/218 (63%), Gaps = 5/218 (2%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+VL++KPKG TS KLR++++ K++GH GTLDP TG+L +CVG+ATK+
Sbjct: 4 VVLLHKPKGMTSHDCVFKLRKILREKRIGHTGTLDPDVTGVLPICVGRATKIAQFLTSET 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V++ + + I +++ A A G I Q+PPMFSA+KV
Sbjct: 64 KTYEGEVTLGFSTTTEDASGEVVETKNVDRVITRKEVEGALAELTGTIEQMPPMFSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDI--ERSLEDRQNLI--FRVTCSKGTYIRSLCA 485
G+K+Y+ AR G+ +E R I+I +F + +R + + +N+ FRVTCSKGTY+R+L
Sbjct: 124 NGKKLYEYARAGQEVERPVRTITIHEFVLLDDREVFEGENISFRFRVTCSKGTYVRTLAV 183
Query: 486 DFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
G+ LG +H++ L R + G++ +D F+E+EE +
Sbjct: 184 MIGEKLGFPSHMSHLVRTASGEFLLEDCISFEEIEENV 221
>gi|317503919|ref|ZP_07961927.1| tRNA pseudouridine synthase B [Prevotella salivae DSM 15606]
gi|315664945|gb|EFV04604.1| tRNA pseudouridine synthase B [Prevotella salivae DSM 15606]
Length = 226
Score = 172 bits (435), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 86/220 (39%), Positives = 131/220 (59%), Gaps = 5/220 (2%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVK-----KVGHAGTLDPMATGLLIVCVGKATKLV 363
G + ++KP +SF +R ++ K+GHAGTLDP+ATG+LI+C GKATK +
Sbjct: 6 GEIFAIDKPYRISSFGALAHVRYVLSRTLGYKVKIGHAGTLDPLATGVLILCTGKATKRI 65
Query: 364 DRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPM 423
+ +QG K Y+ +LG T+++D + V P EHI E I F G+I Q+PP
Sbjct: 66 EEFQGQTKEYTATLQLGATTASYDMEHEVNALFPTEHITRELINDTLPQFIGDIEQIPPT 125
Query: 424 FSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSL 483
+SA+KV G++ Y+ R GE ++L + I I + ++ ++ L RV C KGTYIR+L
Sbjct: 126 YSAVKVNGDRAYELRRAGEEVKLKSKHIHIDEIEVVDFDVEKMQLSLRVVCGKGTYIRAL 185
Query: 484 CADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
D G+AL S A+LTALRR +G ++ D +++ + E I
Sbjct: 186 ARDLGRALNSGAYLTALRRTRVGDFTIDRCLDYEHIREWI 225
>gi|405356585|ref|ZP_11025554.1| tRNA pseudouridine synthase B [Chondromyces apiculatus DSM 436]
gi|397090629|gb|EJJ21484.1| tRNA pseudouridine synthase B [Myxococcus sp. (contaminant ex DSM
436)]
Length = 289
Score = 171 bits (434), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 86/209 (41%), Positives = 129/209 (61%), Gaps = 2/209 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++++KP G TSF V ++R L+++KKVGH GTLDP+ATG+L +C+G+ATK+
Sbjct: 4 VLVIDKPSGPTSFDVVRQVRSLLRIKKVGHTGTLDPLATGVLPLCLGEATKVAGFITEGD 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y RLG T T DA+ V P + I A A +RG Q+PPM+SA+KVG
Sbjct: 64 KAYDATVRLGSETDTLDAEGQVTAHAPVPALTPALIEAALARYRGTYDQIPPMYSAVKVG 123
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKA 490
G+++Y+ AR GE +E + R++++++ + DR + R CSKG ++R+L D G+A
Sbjct: 124 GKRLYELARAGEEVERAARQVTVYELVLRDFSADRLQVSVR--CSKGFFVRTLAQDVGRA 181
Query: 491 LGSCAHLTALRRDSIGQYSADDAWEFKEL 519
LG AHL ALRR + G +S A +L
Sbjct: 182 LGCGAHLEALRRTASGPFSLAQALPLADL 210
>gi|291538570|emb|CBL11681.1| tRNA pseudouridine synthase B [Roseburia intestinalis XB6B4]
Length = 321
Score = 171 bits (434), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 90/215 (41%), Positives = 129/215 (60%), Gaps = 3/215 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ V K KG+TSF V KLR ++K KK+GH GTLDP A G+L VC+GKATK+ D
Sbjct: 15 IINVYKEKGYTSFDVVAKLRGILKTKKIGHTGTLDPDAEGVLPVCLGKATKVCDLLTDKN 74
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y V LG+ T T D V++ E + +E +++A SF GE QVPPM+SA+KV
Sbjct: 75 KEYVAVMLLGKVTDTQDTTGTVLEEHLVE-VTEEQVKEAVLSFTGEYMQVPPMYSALKVN 133
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKA 490
G+K+ D AR G ++E R + ++ +I + + + RV CSKGTYIR+LC D G+
Sbjct: 134 GKKLCDLARAGVTVERQARPVQLYSIEIIKM--ELPRVCMRVRCSKGTYIRTLCQDIGEK 191
Query: 491 LGSCAHLTALRRDSIGQYSADDAWEFKELEEAITK 525
L A + +L R + ++ DA E+EE + K
Sbjct: 192 LSCGACMESLLRTKVSEFCVQDALRLSEIEERVQK 226
>gi|229086362|ref|ZP_04218539.1| tRNA pseudouridine synthase B [Bacillus cereus Rock3-44]
gi|228696974|gb|EEL49782.1| tRNA pseudouridine synthase B [Bacillus cereus Rock3-44]
Length = 307
Score = 171 bits (434), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 87/216 (40%), Positives = 136/216 (62%), Gaps = 5/216 (2%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+VL++KPKG TS KLR++++ K++GH GTLDP TG+L +C+G+ATK+
Sbjct: 4 VVLLHKPKGMTSHDCVFKLRKILREKRIGHTGTLDPDVTGVLPICIGRATKIAQFLTSET 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V++++ I ++ A G I QVPPM+SA+KV
Sbjct: 64 KTYEGEVTLGFSTTTEDASGEVVEKQDVNRIITRSEVEAVLAELTGTIEQVPPMYSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDI--ERSLEDRQNLI--FRVTCSKGTYIRSLCA 485
G+K+Y+ AR G+ +E R I++ +F + +R + + +N+ FRVTCSKGTY+R+L
Sbjct: 124 NGKKLYEYARAGQEVERPVRTITVHEFVLLDDREVFEGENISFRFRVTCSKGTYVRTLAV 183
Query: 486 DFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
G+ LG AH++ L R + G++ +D F+E+EE
Sbjct: 184 MIGEKLGFPAHMSHLVRTASGEFLLEDCISFEEIEE 219
>gi|344200726|ref|YP_004785052.1| tRNA pseudouridine synthase B [Acidithiobacillus ferrivorans SS3]
gi|343776170|gb|AEM48726.1| tRNA pseudouridine synthase B [Acidithiobacillus ferrivorans SS3]
Length = 294
Score = 171 bits (434), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 88/215 (40%), Positives = 127/215 (59%), Gaps = 3/215 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L +KP G TS +++RL +KK GH G+LDP+ATGLL++ G+ATK+ D
Sbjct: 7 LLLFDKPAGLTSNAALQRVKRLFGIKKAGHTGSLDPIATGLLVLLFGEATKVSDYILNAD 66
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y RLG+ T+T D++ +++ P +E +R F G I Q+PPM+SAIK G
Sbjct: 67 KSYRATLRLGQTTTTGDSEGEILEERPVTA-SEEQVRMVLPQFSGVIAQIPPMYSAIKQG 125
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKA 490
G+ +Y+ AR+G +E + R++ I D+ L D L+ V CSKGTYIRSL AD G A
Sbjct: 126 GKPLYELARKGLEVERAARQVRIDALDL--ILLDGDCLVLDVRCSKGTYIRSLAADIGAA 183
Query: 491 LGSCAHLTALRRDSIGQYSADDAWEFKELEEAITK 525
LG AH+ LRR S G + A + L E + +
Sbjct: 184 LGCGAHVNGLRRTSTGPFDIAQALTLEALAEVLGR 218
>gi|312862916|ref|ZP_07723156.1| tRNA pseudouridine synthase B [Streptococcus vestibularis F0396]
gi|311101776|gb|EFQ59979.1| tRNA pseudouridine synthase B [Streptococcus vestibularis F0396]
Length = 293
Score = 171 bits (434), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 85/216 (39%), Positives = 128/216 (59%), Gaps = 3/216 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ + K G TS KLR+++ KK+GH GTLDP TG+L + VGKAT++++
Sbjct: 5 IINLKKEAGMTSHDAVFKLRKILHEKKIGHGGTLDPDVTGVLPIAVGKATRVIEYMTEAG 64
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y G +G +T+T D V+Q P + + + +A ASF GEI Q+PPM+SA+KV
Sbjct: 65 KVYEGEITIGFSTTTEDTSGEVVQTTPITELDEVTVDQAMASFEGEITQIPPMYSAVKVN 124
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQN---LIFRVTCSKGTYIRSLCADF 487
G+K+Y+ AR GE +E R+++I +F +E N FRV CSKGTY+R+L D
Sbjct: 125 GKKLYEYARAGEEVERPQRQVTITEFVRTSPIELENNTAKFTFRVACSKGTYVRTLSVDL 184
Query: 488 GKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
G LG +H++ALRR + + D A ++ E +
Sbjct: 185 GAKLGYASHMSALRRTASAGLTLDKALTLSQISEMV 220
>gi|256832253|ref|YP_003160980.1| tRNA pseudouridine synthase B [Jonesia denitrificans DSM 20603]
gi|256685784|gb|ACV08677.1| tRNA pseudouridine synthase B [Jonesia denitrificans DSM 20603]
Length = 333
Score = 171 bits (434), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 87/228 (38%), Positives = 132/228 (57%), Gaps = 11/228 (4%)
Query: 301 PPTWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKAT 360
P DG +++V+KP G TS V +RRL +KVGHAGTLDPMATGLL+V VG+ T
Sbjct: 28 PTAADG----IIVVDKPTGMTSHDVVAIMRRLAGTRKVGHAGTLDPMATGLLVVGVGRGT 83
Query: 361 KLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQV 420
+L+ K Y+ RLG AT + DAD V +P +H+ E ++ AAA G I QV
Sbjct: 84 RLLHFLTAADKSYTATVRLGVATVSEDADGDVTDTQPCDHVTREQLQAAAARLTGVIDQV 143
Query: 421 PPMFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLED-------RQNLIFRVT 473
P SA+K+ G + YD+ R GE + L R +++ +FDI ++ ++++ V
Sbjct: 144 PSAVSAVKIDGRRAYDRVRAGEDVVLPARSVTVSRFDIVDVVDGPPHHGVATKDVLLSVD 203
Query: 474 CSKGTYIRSLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
S GTY+R+L D + +G+ HL ALRR + +++ +A +L++
Sbjct: 204 VSSGTYVRALGRDLAQIVGTVGHLVALRRTRVAEWTLAEARSVPQLQD 251
>gi|424864023|ref|ZP_18287931.1| tRNA pseudouridine synthase B [SAR86 cluster bacterium SAR86B]
gi|400759954|gb|EJP74131.1| tRNA pseudouridine synthase B [SAR86 cluster bacterium SAR86B]
Length = 242
Score = 171 bits (434), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 90/227 (39%), Positives = 136/227 (59%), Gaps = 7/227 (3%)
Query: 302 PTWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATK 361
PT++G ++LV+KP G TS + +LRR +K+KK+GHAGTLDP+ATGL+I+ +GKATK
Sbjct: 6 PTFEG----ILLVDKPSGITSHDIVDRLRRKLKMKKIGHAGTLDPLATGLMIMLIGKATK 61
Query: 362 LVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPW-EHIKDEDIRKAAASFRGEIWQV 420
+ + K Y G F LG T + D+D +++R E + ++ IR F G+ +Q
Sbjct: 62 VSQFLISLDKAYEGTFELGVETDSQDSDGEIVERRDLPEDLSEDMIRNEMKQFLGDQYQT 121
Query: 421 PPMFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYI 480
PPMFSA K+ G +Y AR+G+++E PR I I + + + F + CSKGTY+
Sbjct: 122 PPMFSAKKIDGVPLYKMARKGKTVEREPRVIRINELTLTNWSSPQGE--FFMDCSKGTYV 179
Query: 481 RSLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAITKNY 527
R++ D G+ LG HLT+LRR I +S + +E+E T +
Sbjct: 180 RTVFHDLGQNLGCGGHLTSLRRTKINDFSIEGVSTLEEIEHMGTAEF 226
>gi|217961230|ref|YP_002339798.1| tRNA pseudouridine synthase B [Bacillus cereus AH187]
gi|229140451|ref|ZP_04269006.1| tRNA pseudouridine synthase B [Bacillus cereus BDRD-ST26]
gi|423353512|ref|ZP_17331139.1| tRNA pseudouridine synthase B [Bacillus cereus IS075]
gi|423374393|ref|ZP_17351731.1| tRNA pseudouridine synthase B [Bacillus cereus AND1407]
gi|423567295|ref|ZP_17543542.1| tRNA pseudouridine synthase B [Bacillus cereus MSX-A12]
gi|217067797|gb|ACJ82047.1| tRNA pseudouridine synthase B [Bacillus cereus AH187]
gi|228643012|gb|EEK99288.1| tRNA pseudouridine synthase B [Bacillus cereus BDRD-ST26]
gi|401089325|gb|EJP97496.1| tRNA pseudouridine synthase B [Bacillus cereus IS075]
gi|401094305|gb|EJQ02387.1| tRNA pseudouridine synthase B [Bacillus cereus AND1407]
gi|401214383|gb|EJR21113.1| tRNA pseudouridine synthase B [Bacillus cereus MSX-A12]
Length = 307
Score = 171 bits (434), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 88/218 (40%), Positives = 139/218 (63%), Gaps = 5/218 (2%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+VL++KPKG TS KLR++++ K++GH GTLDP TG+L +CVG+ATK+
Sbjct: 4 VVLLHKPKGMTSHDCVFKLRKILREKRIGHTGTLDPDVTGVLPICVGRATKIAQFLTSET 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V++ + + I +++ + A G I Q+PPMFSA+KV
Sbjct: 64 KTYEGEVTLGFSTTTEDASGEVVETKHVDRVITRKEVEEVLAVLTGTIEQMPPMFSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDI--ERSLEDRQNLI--FRVTCSKGTYIRSLCA 485
G+K+Y+ AR G+ +E R I+I +F + +R + + +N+ FRVTCSKGTY+R+L
Sbjct: 124 NGKKLYEYARAGQEVERPVRTITIHEFVLLDDREVFEGENISFRFRVTCSKGTYVRTLAV 183
Query: 486 DFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
G+ LG +H++ L R + G++ +D F+E+EE +
Sbjct: 184 MIGEKLGFPSHMSHLVRTASGEFVLEDCISFEEIEENV 221
>gi|326204069|ref|ZP_08193930.1| tRNA pseudouridine synthase B [Clostridium papyrosolvens DSM 2782]
gi|325985836|gb|EGD46671.1| tRNA pseudouridine synthase B [Clostridium papyrosolvens DSM 2782]
Length = 309
Score = 171 bits (434), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 91/220 (41%), Positives = 128/220 (58%), Gaps = 15/220 (6%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
V KP G TSF V G +RR+ KK+GHAGTLDP A G+L +C+G AT+ ++ K Y
Sbjct: 7 VLKPAGMTSFDVIGFMRRITGQKKIGHAGTLDPSAVGVLPLCIGNATRALEFMIDKDKVY 66
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEK 433
LG +T T D+ V+ E + +++I+K SF G I Q+PPM+SAIK+GG+K
Sbjct: 67 RAELTLGVSTDTQDSSGIVLDSYSVE-VNEDEIKKTVMSFVGTIEQLPPMYSAIKIGGKK 125
Query: 434 MYDKARRGESIELSPRRISIFQFDIERSLEDR--------------QNLIFRVTCSKGTY 479
+Y+ AR+G++IE R I I+ D+ R ED + + V CSKGTY
Sbjct: 126 LYELARQGQTIERESRTIQIYSIDVIRVWEDSAVFDSEGTAKEFAVKKALLDVHCSKGTY 185
Query: 480 IRSLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKEL 519
IR+LC D G LG H++ L R GQY+ D+A +E+
Sbjct: 186 IRTLCNDIGDKLGCGGHMSFLVRTRAGQYNLDNALTMEEV 225
>gi|359775406|ref|ZP_09278744.1| tRNA pseudouridine synthase B [Arthrobacter globiformis NBRC 12137]
gi|359307369|dbj|GAB12573.1| tRNA pseudouridine synthase B [Arthrobacter globiformis NBRC 12137]
Length = 305
Score = 171 bits (434), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 88/201 (43%), Positives = 121/201 (60%), Gaps = 8/201 (3%)
Query: 329 LRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSGVFRLGEATSTWDA 388
+RR+ +KVGHAGTLDPMATG+L++ + KAT+L+ G K Y+ RLGE+T T DA
Sbjct: 1 MRRIAGTRKVGHAGTLDPMATGVLVLGINKATRLLTYIVGTSKTYTATIRLGESTITDDA 60
Query: 389 DSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEKMYDKARRGESIELSP 448
+ V+ R + ++ IR S GEI QVP SAIKV GE+ Y + R GE ++L+
Sbjct: 61 EGEVVSRASAASLTEDAIRSGVGSLTGEIQQVPSSVSAIKVNGERSYARVRSGEDVQLAA 120
Query: 449 RRISIFQFDIERSLEDRQ--------NLIFRVTCSKGTYIRSLCADFGKALGSCAHLTAL 500
R ++I +FDI D+ ++ V CS GTYIR+L D G +LG HLTAL
Sbjct: 121 RPVTIHRFDIHGIRRDQAAGHDTEVVDVDVTVECSSGTYIRALARDLGNSLGVGGHLTAL 180
Query: 501 RRDSIGQYSADDAWEFKELEE 521
RR ++G YS D A ++L E
Sbjct: 181 RRTNVGPYSLDQARTLEQLAE 201
>gi|261879605|ref|ZP_06006032.1| tRNA pseudouridine synthase B [Prevotella bergensis DSM 17361]
gi|270333754|gb|EFA44540.1| tRNA pseudouridine synthase B [Prevotella bergensis DSM 17361]
Length = 232
Score = 171 bits (434), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 84/217 (38%), Positives = 127/217 (58%), Gaps = 5/217 (2%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVK-----KVGHAGTLDPMATGLLIVCVGKATKLV 363
G + ++KP +SF +R L+ K K+GHAGTLDP+ATG+L++C GK TK +
Sbjct: 6 GEIFAIDKPYRMSSFGALAHVRYLLSRKLGRKVKIGHAGTLDPLATGVLVLCTGKCTKQI 65
Query: 364 DRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPM 423
+ Q K Y+ +LG T ++D + V P HI ++ +R+ F G+I QVPP
Sbjct: 66 ETLQAHTKEYTATLQLGATTDSYDREHTVNHTYPCRHITEDMVREVLKQFEGDIDQVPPT 125
Query: 424 FSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSL 483
+SA+KVGG + Y+ R G+ +EL+P+RI I Q ++ + RV C KGTYIR+L
Sbjct: 126 YSAVKVGGVRAYNMRRMGQDVELAPKRIRIDQIELTAFDAATHRMSIRVVCGKGTYIRAL 185
Query: 484 CADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELE 520
D G+A+ S A LT LRR +G + +D +F + +
Sbjct: 186 ARDIGRAMDSGAFLTELRRTRVGDITVEDCIDFNQFQ 222
>gi|392400805|ref|YP_006437405.1| tRNA pseudouridine synthase B [Corynebacterium pseudotuberculosis
Cp162]
gi|390531883|gb|AFM07612.1| tRNA pseudouridine synthase B [Corynebacterium pseudotuberculosis
Cp162]
Length = 324
Score = 171 bits (434), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 96/234 (41%), Positives = 131/234 (55%), Gaps = 17/234 (7%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G TS V G+LRR+ K+VGHAGTLDPMATG+L+V + + TK +
Sbjct: 10 LVVVDKPAGMTSHDVVGRLRRIFGTKRVGHAGTLDPMATGVLVVGIERGTKFLAHMVAST 69
Query: 371 KGYSGVFRLGEATSTWDADSPVI---QREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAI 427
K Y RLG AT+T D + V+ I D DI +F G I Q P SAI
Sbjct: 70 KSYRATIRLGLATTTDDKEGEVVFSADASTLSAITDADIAAEITNFTGNIMQRPASVSAI 129
Query: 428 KVGGEKMYDKARRGESIELSPRRISIFQF---DIERSLE-DRQNLIFRVTCSKGTYIRSL 483
K+ G++ + R G+ +E+ PR ++I+ F DI RSL + ++ VTCS GTYIRSL
Sbjct: 130 KINGKRAHQMVREGQEVEIPPRPVTIYNFDVLDISRSLPLEFIDIEVEVTCSSGTYIRSL 189
Query: 484 CADFGKALGSCAHLTALRRDSIGQYSADDAWEFKE----------LEEAITKNY 527
D G AL HLTALRR S+G +S D + L+E++T+ Y
Sbjct: 190 ARDLGSALNVGGHLTALRRLSVGPFSLSDTITLDDLTATPKLSLSLDESLTRCY 243
>gi|340352202|ref|ZP_08675087.1| tRNA pseudouridine synthase B [Prevotella pallens ATCC 700821]
gi|339614930|gb|EGQ19615.1| tRNA pseudouridine synthase B [Prevotella pallens ATCC 700821]
Length = 235
Score = 171 bits (434), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 89/218 (40%), Positives = 125/218 (57%), Gaps = 5/218 (2%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLV-KVK----KVGHAGTLDPMATGLLIVCVGKATKLV 363
G ++ ++KP G TSF +R L K++ K+GHAGTLDP+ATG+LI+ GK TK +
Sbjct: 6 GVIIPIDKPYGITSFKALAHVRYLCSKMQGGRVKIGHAGTLDPLATGVLILATGKMTKQI 65
Query: 364 DRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPM 423
++ Q K Y +LG T ++D + + P EHI E I A F G+I QVPP
Sbjct: 66 EKLQTHTKEYVATIQLGATTPSYDMEHEENETFPTEHITRELIETALQQFIGDIEQVPPT 125
Query: 424 FSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSL 483
+SA+KV G++ +D R GE I L P+ I I + +I DR L RV C KGTYIR+L
Sbjct: 126 YSAVKVNGQRAFDYRRNGEDIVLKPKNIRIDEIEITHFDADRMQLTLRVVCGKGTYIRAL 185
Query: 484 CADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
D G+A+ S A+L ALRR +G ++ + E
Sbjct: 186 ARDLGRAINSGAYLVALRRTRVGNIKVEECINYDHFNE 223
>gi|419842121|ref|ZP_14365477.1| tRNA pseudouridine synthase B [Fusobacterium necrophorum subsp.
funduliforme ATCC 51357]
gi|386902748|gb|EIJ67570.1| tRNA pseudouridine synthase B [Fusobacterium necrophorum subsp.
funduliforme ATCC 51357]
Length = 285
Score = 171 bits (434), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 83/213 (38%), Positives = 133/213 (62%), Gaps = 2/213 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++V K KG +SF V LR++++ +K+GH GTLDP+ATG+LI+CVGKAT+L +
Sbjct: 4 IIVVKKEKGMSSFDVIRSLRKILQERKIGHTGTLDPLATGVLILCVGKATRLAQEIEAEE 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y G T T+D + V+ + + E+ K ++G+I QVPPM+SAIK+
Sbjct: 64 KIYEAEMEFGYQTDTYDLEGKVVTESLKKKVSREEFEKVLEKWKGDILQVPPMYSAIKLQ 123
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKA 490
G+K+Y+ AR+G +E R++++F+ + + ++ +V SKGTYIRSL D GK
Sbjct: 124 GKKLYELARKGVEVEREARKVTVFEIHTLEFQQTKAKILTKV--SKGTYIRSLIHDIGKD 181
Query: 491 LGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
LGS A +TAL R +G+++ +A+ E+ + I
Sbjct: 182 LGSFATMTALNRIQVGEHTLKNAYTLSEIHDKI 214
>gi|402846097|ref|ZP_10894415.1| tRNA pseudouridine(55) synthase [Porphyromonas sp. oral taxon 279
str. F0450]
gi|402268428|gb|EJU17799.1| tRNA pseudouridine(55) synthase [Porphyromonas sp. oral taxon 279
str. F0450]
Length = 243
Score = 171 bits (434), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 94/219 (42%), Positives = 131/219 (59%), Gaps = 10/219 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR----RLVKVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G + ++KP W+SF++ K R R + +KK VGHAGTLDP+ATG++I+C GK TK
Sbjct: 9 GATIALDKPLTWSSFSLVNKFRCEACRYLGIKKLKVGHAGTLDPLATGVMILCTGKHTKR 68
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
+D Q K Y RLG+ T T+D ++ P EHI E + +A F G I QVPP
Sbjct: 69 IDELQAGRKEYIADIRLGQTTPTFDMETEPDAFFPTEHITREAVEEALKGFIGTIEQVPP 128
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFD-IERSLEDRQNLIFRVTCSKGTYIR 481
FSA+KV G + YD AR+G EL + + I + + ++ +L Q RV CSKGTYIR
Sbjct: 129 AFSAVKVDGRRAYDLARKGRDFELKAKILVIDEIELLDYALPQIQ---IRVVCSKGTYIR 185
Query: 482 SLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELE 520
+L D G ALGS HLT LRR +G Y +D + ++++
Sbjct: 186 ALARDIGTALGSGGHLTDLRRTRVGDYRIEDCYRVEDIQ 224
>gi|433445985|ref|ZP_20410116.1| tRNA pseudouridine synthase B [Anoxybacillus flavithermus
TNO-09.006]
gi|432000730|gb|ELK21622.1| tRNA pseudouridine synthase B [Anoxybacillus flavithermus
TNO-09.006]
Length = 298
Score = 171 bits (434), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 90/222 (40%), Positives = 131/222 (59%), Gaps = 11/222 (4%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L++KP G TS ++R+L + KKVGH GTLDP G+L +C+GKATK+V+
Sbjct: 4 VLLLHKPAGMTSHDCVMRIRKLFQTKKVGHTGTLDPDVRGVLPICIGKATKIVELLTAEK 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG AT+T DA V+ +P E I +I A GEI Q PPM+SA+KV
Sbjct: 64 KTYEGEVTLGIATTTEDASGDVVSIKPIERSIARHEIEHVLAKLTGEIEQTPPMYSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLI-------FRVTCSKGTYIRS 482
G+K+Y+ AR G +E R + I++ + L+DRQ FRVTCSKGTY+R+
Sbjct: 124 NGKKLYEYARAGIDVERPKRHVHIYELQL---LDDRQVFTGERISFRFRVTCSKGTYVRT 180
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAIT 524
L G+ LG AH++ L R + G ++ D F ++E+ ++
Sbjct: 181 LAVQIGEQLGYPAHMSRLVRTASGSFTLDQCVTFADIEQHLS 222
>gi|319947276|ref|ZP_08021509.1| tRNA pseudouridine synthase B [Streptococcus australis ATCC 700641]
gi|319746518|gb|EFV98778.1| tRNA pseudouridine synthase B [Streptococcus australis ATCC 700641]
Length = 309
Score = 171 bits (434), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 94/238 (39%), Positives = 137/238 (57%), Gaps = 8/238 (3%)
Query: 293 IVSRSTELPPTWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLL 352
+V+ E DG ++ + K G TS V KLR+++ KK+GH GTLDP G+L
Sbjct: 1 MVTHEIERANLMDG----IINIKKEAGMTSHDVVFKLRKILGTKKIGHGGTLDPDVVGVL 56
Query: 353 IVCVGKATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKD-EDIRKAAA 411
+ VGKAT++V+ Q K Y G LG +T+T DA +++R P E D ++ A
Sbjct: 57 PIAVGKATRMVEFMQDEGKIYEGEITLGFSTTTEDASGEIVERTPVESPLDAAEVDHMIA 116
Query: 412 SFRGEIWQVPPMFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLI-- 469
GEI QVPPM+SA+KV G K+Y+ AR GE +E R+++I+ F + ++ L
Sbjct: 117 QMVGEIEQVPPMYSAVKVNGRKLYEYARAGEEVERPVRQVTIYDFTRTSDIGYKEGLARF 176
Query: 470 -FRVTCSKGTYIRSLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAITKN 526
FRV CSKGTYIR+L D G+ LG AH++ L R S S +DA +E+ E +++
Sbjct: 177 RFRVKCSKGTYIRTLSVDLGQKLGYAAHMSHLTRTSAAGLSLEDALTLEEVAEKVSQG 234
>gi|229820973|ref|YP_002882499.1| tRNA pseudouridine synthase B [Beutenbergia cavernae DSM 12333]
gi|229566886|gb|ACQ80737.1| tRNA pseudouridine synthase B [Beutenbergia cavernae DSM 12333]
Length = 307
Score = 171 bits (434), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 93/215 (43%), Positives = 127/215 (59%), Gaps = 8/215 (3%)
Query: 306 GPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDR 365
GP G + +V+K WTS V + RRL+ +KVGHAGTLDP ATG+L++ VG+AT+L+
Sbjct: 6 GPDG-LAVVDKQAEWTSHDVVARARRLLGTRKVGHAGTLDPAATGVLLLGVGRATRLLTY 64
Query: 366 YQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFS 425
G K Y RLG++T T DA+ V + IR A+F G+I QVP S
Sbjct: 65 LVGADKTYIATIRLGQSTVTDDAEGEVTSAAGAAEVSGTAIRDGVATFLGDISQVPSAVS 124
Query: 426 AIKVGGEKMYDKARRGESIELSPRRISIFQFDI-----ERSLEDR--QNLIFRVTCSKGT 478
AIKV G + Y + R GE ++L+ R + + FD+ ++L+ Q++ RV CS GT
Sbjct: 125 AIKVDGRRAYARVRAGEDVQLAARGVHVAVFDVLGVVPAQALDGTPVQDVRVRVVCSSGT 184
Query: 479 YIRSLCADFGKALGSCAHLTALRRDSIGQYSADDA 513
YIR+L D G LG HLTALRR +G +S DDA
Sbjct: 185 YIRALARDLGDLLGVGGHLTALRRTHVGGFSLDDA 219
>gi|406577187|ref|ZP_11052804.1| tRNA pseudouridine synthase B [Streptococcus sp. GMD6S]
gi|419818049|ref|ZP_14342162.1| tRNA pseudouridine synthase B [Streptococcus sp. GMD4S]
gi|404460275|gb|EKA06548.1| tRNA pseudouridine synthase B [Streptococcus sp. GMD6S]
gi|404465117|gb|EKA10621.1| tRNA pseudouridine synthase B [Streptococcus sp. GMD4S]
Length = 292
Score = 171 bits (434), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 92/217 (42%), Positives = 127/217 (58%), Gaps = 4/217 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ + K G TS KLR+++ KK+GH GTLDP G+L + VGKAT++V+ Q
Sbjct: 4 IINLKKEAGMTSHDAVFKLRKILGTKKIGHGGTLDPDVVGVLPIAVGKATRMVEFMQDEG 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIR-KAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA VI P + DE I +A AS G I Q+PPM+SA+KV
Sbjct: 64 KVYEGEITLGYSTTTEDASGEVIAETPVLSLLDETIVDEAIASLTGPITQIPPMYSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNL---IFRVTCSKGTYIRSLCAD 486
G K+Y+ AR G+ +E R+++I+QF+ + L FRV CSKGTYIR+L D
Sbjct: 124 NGRKLYEYARAGQEVERPERQVTIYQFERTSPISYESELARFTFRVKCSKGTYIRTLSVD 183
Query: 487 FGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
GK LG AH++ L R S +DA KE+ E +
Sbjct: 184 LGKKLGYAAHMSHLTRTSAAGLQLEDALTLKEIAEKV 220
>gi|423582020|ref|ZP_17558131.1| tRNA pseudouridine synthase B [Bacillus cereus VD014]
gi|401212899|gb|EJR19640.1| tRNA pseudouridine synthase B [Bacillus cereus VD014]
Length = 307
Score = 171 bits (434), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 90/221 (40%), Positives = 137/221 (61%), Gaps = 11/221 (4%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+VL++KPKG TS KLR++++ K++GH GTLDP TG+L +CVG+ATK+
Sbjct: 4 VVLLHKPKGMTSHDCVFKLRKILREKRIGHTGTLDPDVTGVLPICVGRATKIAQFLTSET 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V + + + I +++ K A G I Q+PPMFSA+KV
Sbjct: 64 KTYEGEVTLGFSTTTEDASGEVAETKNVDRTITRKEVEKVLAELTGTIEQMPPMFSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQ-------NLIFRVTCSKGTYIRS 482
G+K+Y+ AR G+ +E R I+I +F + L+DR+ + FRVTCSKGTY+R+
Sbjct: 124 NGKKLYEYARAGQEVERPVRTITIHEFVL---LDDREVFEGENISFRFRVTCSKGTYVRT 180
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
L G+ LG +H++ L R + G++ +D F+E+EE +
Sbjct: 181 LAVMIGEKLGFPSHMSHLVRTASGEFLLEDCISFEEIEENV 221
>gi|418459728|ref|ZP_13030841.1| tRNA pseudouridine synthase B [Saccharomonospora azurea SZMC 14600]
gi|359740209|gb|EHK89056.1| tRNA pseudouridine synthase B [Saccharomonospora azurea SZMC 14600]
Length = 308
Score = 171 bits (433), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 95/240 (39%), Positives = 137/240 (57%), Gaps = 12/240 (5%)
Query: 286 VGSGEPYIVSRSTELPPTWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLD 345
VG G Y ST+ PP +++V+KP G TS V K RR ++ +K+GHAGTLD
Sbjct: 2 VGDGG-YSACVSTQAPPPG------LLIVDKPAGMTSHDVVAKARRFLRTRKIGHAGTLD 54
Query: 346 PMATGLLIVCVGKATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQR---EPWEHIK 402
PMATG+L++ V +ATKL+ + K Y LG AT+T DA+ V+ R +
Sbjct: 55 PMATGVLVLGVERATKLLGQLALDRKTYLATISLGVATTTDDAEGEVVARADESALAEVA 114
Query: 403 DEDIRKAAASFRGEIWQVPPMFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDI--ER 460
D I A+ G+I Q P SA+KV G++ Y + R GE ++L R +++++FD+ +R
Sbjct: 115 DSAITAEIAALTGDILQKPSAVSAVKVDGKRAYARVRAGEEVDLPARPVTVYRFDVLAQR 174
Query: 461 SLEDRQNLIFRVTCSKGTYIRSLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELE 520
DR L V CS GTY+R+L D G ALG HL ALRR S+G ++ A +++E
Sbjct: 175 RETDRLELDVMVDCSSGTYVRALARDLGAALGVGGHLAALRRTSVGPFTLAKARSLEDVE 234
>gi|315655680|ref|ZP_07908578.1| tRNA pseudouridine synthase B [Mobiluncus curtisii ATCC 51333]
gi|315489744|gb|EFU79371.1| tRNA pseudouridine synthase B [Mobiluncus curtisii ATCC 51333]
Length = 354
Score = 171 bits (433), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 96/228 (42%), Positives = 133/228 (58%), Gaps = 14/228 (6%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP+G +S V ++RRL KKVG+AGTLDP+ATG+LI +GKAT+L+
Sbjct: 25 LVIVDKPRGLSSNAVASRIRRLAGQKKVGYAGTLDPLATGILICAIGKATRLLQYLTAHD 84
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y+ R G +T T DA VI R + +I A +RG + Q+P FSAIK+G
Sbjct: 85 KVYTARVRFGISTDTDDALGQVISRA-GAALSTAEITAALEPWRGAVDQIPAKFSAIKIG 143
Query: 431 GEKMYDKARRGESIELSPRRISIFQFD------IERSLEDRQNLIFRVT-------CSKG 477
G++ YD AR G+++E+ PR ++I + + +E D N +VT CS G
Sbjct: 144 GKRAYDLARAGKNVEIQPRPVTIHRLELRGAPVLETVAGDDSNPPVQVTDADIVVGCSAG 203
Query: 478 TYIRSLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAITK 525
TY+RSL D G LG AHLTALRR S+G Y D A ELE + +
Sbjct: 204 TYVRSLARDLGADLGVGAHLTALRRISVGTYGLDQAHSLSELETEVRR 251
>gi|423483400|ref|ZP_17460090.1| tRNA pseudouridine synthase B [Bacillus cereus BAG6X1-2]
gi|401140951|gb|EJQ48506.1| tRNA pseudouridine synthase B [Bacillus cereus BAG6X1-2]
Length = 307
Score = 171 bits (433), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 88/218 (40%), Positives = 138/218 (63%), Gaps = 5/218 (2%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+VL++KPK TS KLR++++ K++GH GTLDP TG+L +CVG+ATK+
Sbjct: 4 VVLLHKPKVMTSHDCVFKLRKILREKRIGHTGTLDPDVTGVLPICVGRATKIAQFLTSET 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V++++ I +++ + A G I Q+PPMFSA+KV
Sbjct: 64 KTYEGEVTLGFSTTTEDASGEVVEKQDVNRVITRKEVEEVLAELTGTIEQMPPMFSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDI--ERSLEDRQNLI--FRVTCSKGTYIRSLCA 485
G+K+Y+ AR G+ +E R I+I +F + ER + + +N+ FRVTCSKGTY+R+L
Sbjct: 124 NGKKLYEYARAGQEVERPVRTITIHEFVLLDEREVFEGENISFRFRVTCSKGTYVRTLAV 183
Query: 486 DFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
G+ LG +H++ L R + G++ +D F+E+EE +
Sbjct: 184 MIGEKLGFPSHMSHLVRTASGEFLLEDCISFEEIEEKV 221
>gi|198274128|ref|ZP_03206660.1| hypothetical protein BACPLE_00265 [Bacteroides plebeius DSM 17135]
gi|198273206|gb|EDY97475.1| tRNA pseudouridine synthase B [Bacteroides plebeius DSM 17135]
Length = 234
Score = 171 bits (433), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 91/218 (41%), Positives = 131/218 (60%), Gaps = 8/218 (3%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR----RLVKVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G ++ +KP WTSF V K+R R + VKK VGHAGTLDP+ATG++I+C GKATK
Sbjct: 6 GEVLYFDKPLRWTSFAVVNKIRYHISRKLGVKKIKVGHAGTLDPLATGVMIICTGKATKR 65
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ +Q K Y +LG T ++D + + P +HI E + + F G I QVPP
Sbjct: 66 IEEFQYHTKEYIATLQLGATTPSFDLEKEIDATYPTDHITKEMVEETLKKFVGTIEQVPP 125
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRS 482
FSA KV G++ YD AR+G+ +EL P+ + I + ++ + + RV CSKGTYIR+
Sbjct: 126 AFSACKVDGKRAYDLARKGDEVELKPKILVIDEIELLEC--NLPEIKIRVVCSKGTYIRA 183
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELE 520
L D G+AL S AHLT L R +G+ +D + ++ E
Sbjct: 184 LARDIGQALQSGAHLTGLIRTRVGEVKLEDCMKVEDFE 221
>gi|358458919|ref|ZP_09169124.1| tRNA pseudouridine synthase B [Frankia sp. CN3]
gi|357077881|gb|EHI87335.1| tRNA pseudouridine synthase B [Frankia sp. CN3]
Length = 324
Score = 171 bits (433), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 92/213 (43%), Positives = 130/213 (61%), Gaps = 11/213 (5%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+++KP+GWTS V + RR+++ +K+GHAGTLDPMATG+L++ VG+ATKL+
Sbjct: 32 LVVLDKPQGWTSHDVVARARRILRTRKIGHAGTLDPMATGVLLLGVGRATKLLGHLALTS 91
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y V RLG T T DA+ V+ P + E + A A+ G I QVP SA+KV
Sbjct: 92 KEYEAVIRLGATTVTDDAEGEVLDERPVDA-APERLAAAMAALTGAIDQVPSSVSAVKVD 150
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQ---------NLIFRVTCSKGTYIR 481
G++ Y + R GE + L+ RR++I F++ L DR +L RV CS GTYIR
Sbjct: 151 GKRAYARVRSGEDVVLAARRVTISAFELRERL-DRATGAPDPAGTDLAVRVACSSGTYIR 209
Query: 482 SLCADFGKALGSCAHLTALRRDSIGQYSADDAW 514
++ D G ALG HLTALRR S+G ++ +A
Sbjct: 210 AIARDLGAALGCGGHLTALRRTSVGPFAVTEAL 242
>gi|338533272|ref|YP_004666606.1| tRNA pseudouridine synthase B [Myxococcus fulvus HW-1]
gi|337259368|gb|AEI65528.1| tRNA pseudouridine synthase B [Myxococcus fulvus HW-1]
Length = 289
Score = 171 bits (433), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 86/199 (43%), Positives = 127/199 (63%), Gaps = 2/199 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++++KP G TSF V ++R L+++KKVGH GTLDP+ATG+L +C+G+ATK+
Sbjct: 4 VLVIDKPTGPTSFDVVRQVRSLLRIKKVGHTGTLDPLATGVLPLCLGEATKVAGFITEGD 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y RLG T T DA+ V + P + I A A FRG QVPPM+SA+KVG
Sbjct: 64 KAYDATVRLGAETDTLDAEGQVTAQAPVPALTPALIEAALARFRGTFDQVPPMYSAVKVG 123
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKA 490
G+++Y+ AR GE +E + R++++++ + +R L R CSKG ++R+L D G+A
Sbjct: 124 GKRLYELARAGEEVERAARQVTVYELVLRDFSAERLQLSVR--CSKGFFVRTLAQDVGRA 181
Query: 491 LGSCAHLTALRRDSIGQYS 509
LG AHL ALRR + G +S
Sbjct: 182 LGCGAHLEALRRTASGPFS 200
>gi|292492788|ref|YP_003528227.1| tRNA pseudouridine synthase B [Nitrosococcus halophilus Nc4]
gi|291581383|gb|ADE15840.1| tRNA pseudouridine synthase B [Nitrosococcus halophilus Nc4]
Length = 308
Score = 171 bits (433), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 91/210 (43%), Positives = 129/210 (61%), Gaps = 2/210 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+ L++KP G TS + +++R+ + +K GH G+LDP+A+GLL +C+G+ATKL
Sbjct: 15 LFLLDKPVGITSNSALQRVKRIYQARKAGHTGSLDPLASGLLPICLGEATKLSGFLLEAD 74
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y RLG T+T DAD +I+ P + + ++ K ASF G QVPPM+SAIK
Sbjct: 75 KRYQVTCRLGVVTTTGDADGEIIETHPVKELDTKEAAKVLASFAGPQEQVPPMYSAIKRQ 134
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKA 490
G+ +Y AR+G +E PRRI+I IE + + L F V CSKGTYIR+L D G+A
Sbjct: 135 GQPLYKLARQGIEVEREPRRITIHA--IELTALANEQLSFEVFCSKGTYIRTLAEDIGRA 192
Query: 491 LGSCAHLTALRRDSIGQYSADDAWEFKELE 520
LG AH+TALRR +G ++A + LE
Sbjct: 193 LGCGAHVTALRRTQVGCFNAPGMTSLEHLE 222
>gi|354581529|ref|ZP_09000433.1| tRNA pseudouridine synthase B [Paenibacillus lactis 154]
gi|353201857|gb|EHB67310.1| tRNA pseudouridine synthase B [Paenibacillus lactis 154]
Length = 304
Score = 171 bits (433), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 89/215 (41%), Positives = 131/215 (60%), Gaps = 6/215 (2%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ V+KP GWTS V K+R +V++K++GH GTLDP TG+L +C+G+AT++V+ Q +
Sbjct: 7 ILAVHKPAGWTSHDVVAKVRGIVRMKRIGHTGTLDPEVTGVLPLCLGRATRVVEYMQELP 66
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y V RLG AT T D VI+ + E+ +A SF GEI QVPPM+SA+KV
Sbjct: 67 KEYEAVLRLGYATDTEDVTGTVIEEAESVLVTREEAEEALRSFVGEISQVPPMYSAVKVN 126
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQN----LIFRVTCSKGTYIRSLCAD 486
G+++Y+ AR G+++E R ++I +IE + D + FRV CSKGTYIR+LC D
Sbjct: 127 GKRLYELAREGKTVERKSRTVTI--HEIEMTGYDASGAYPEISFRVLCSKGTYIRTLCVD 184
Query: 487 FGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
G+ LG + + L R A D + +E+
Sbjct: 185 IGRKLGVPSVMVRLVRTISAGIPAADCLTLETIEQ 219
>gi|229092850|ref|ZP_04223984.1| tRNA pseudouridine synthase B [Bacillus cereus Rock3-42]
gi|228690472|gb|EEL44255.1| tRNA pseudouridine synthase B [Bacillus cereus Rock3-42]
Length = 307
Score = 171 bits (433), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 89/221 (40%), Positives = 138/221 (62%), Gaps = 11/221 (4%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+VL++KPKG TS KLR++++ K++GH GTLDP TG+L +CVG+ATK+
Sbjct: 4 VVLLHKPKGMTSHDCVFKLRKILREKRIGHTGTLDPDVTGVLPICVGRATKIAQFLTSET 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V++ + + I +++ A + G I Q+PPMFSA+KV
Sbjct: 64 KTYEGEVTLGFSTTTEDASGEVVETKHVDRVITRKEVEGALVTLTGTIEQMPPMFSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQ-------NLIFRVTCSKGTYIRS 482
G+K+Y+ AR G+ +E R I+I +F + L+DR+ + FRVTCSKGTY+R+
Sbjct: 124 NGKKLYEYARAGQEVERPVRTITIHEFVL---LDDREVFEGETISFRFRVTCSKGTYVRT 180
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
L G+ LG +H++ L R + G++ +D F+E+EE +
Sbjct: 181 LAVMIGEKLGFPSHMSHLVRTASGEFLLEDCISFEEIEENV 221
>gi|108758349|ref|YP_630300.1| tRNA pseudouridine synthase B [Myxococcus xanthus DK 1622]
gi|108462229|gb|ABF87414.1| tRNA pseudouridine synthase B [Myxococcus xanthus DK 1622]
Length = 289
Score = 171 bits (433), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 86/218 (39%), Positives = 133/218 (61%), Gaps = 2/218 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++++KP G TSF V ++R L+++KKVGH GTLDP+ATG+L +C+G+ATK+
Sbjct: 4 VLVIDKPTGPTSFDVVRQVRSLLRLKKVGHTGTLDPLATGVLPLCLGEATKVAGFITEGD 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y RLG T T DA+ V + P + I A A FRG QVPPM+SA+KVG
Sbjct: 64 KAYDATVRLGSETDTLDAEGQVTAQAPVPALTPALIESALARFRGTFDQVPPMYSAVKVG 123
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKA 490
G+++Y+ AR GE +E + R++++++ + +R L R CSKG ++R+L + G+A
Sbjct: 124 GKRLYELARAGEEVERAARQVTVYELVLRDFSAERLQLSVR--CSKGFFVRTLAQEVGRA 181
Query: 491 LGSCAHLTALRRDSIGQYSADDAWEFKELEEAITKNYF 528
LG AHL ALRR + G ++ A ++ E + +
Sbjct: 182 LGCGAHLEALRRTASGPFTLAQALPLADVPELLKEGAL 219
>gi|253573570|ref|ZP_04850913.1| tRNA pseudouridine synthase B [Paenibacillus sp. oral taxon 786
str. D14]
gi|251847098|gb|EES75103.1| tRNA pseudouridine synthase B [Paenibacillus sp. oral taxon 786
str. D14]
Length = 305
Score = 171 bits (433), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 81/193 (41%), Positives = 125/193 (64%), Gaps = 6/193 (3%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
++KP G+TS V K R ++K+K++GH GTLDP TG+L +C+G+AT++V+ Q + K Y
Sbjct: 10 IHKPAGFTSHDVVAKCRGILKMKRIGHTGTLDPAVTGVLPLCLGRATRMVEYLQDLPKEY 69
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEK 433
LG AT T D +I++ + +ED+R+ + F G I Q+PPM+SA+K G++
Sbjct: 70 EATLVLGVATDTEDMTGEIIEQVNEVQVTEEDVRRVLSRFVGTISQIPPMYSALKQDGKR 129
Query: 434 MYDKARRGESIELSPRRISIFQFDI----ERSLEDRQNLIFRVTCSKGTYIRSLCADFGK 489
+Y+ AR G+++E PR ++I+Q ++ L R + FR CSKGTYIR+LC D G+
Sbjct: 130 LYELAREGKTVERKPREVTIYQLELLAFHPEGLHPRIS--FRALCSKGTYIRTLCVDIGR 187
Query: 490 ALGSCAHLTALRR 502
ALG A +T L+R
Sbjct: 188 ALGVPAAMTELKR 200
>gi|300704334|ref|YP_003745937.1| tRNA pseudouridine synthase b [Ralstonia solanacearum CFBP2957]
gi|299071998|emb|CBJ43328.1| tRNA pseudouridine synthase B [Ralstonia solanacearum CFBP2957]
Length = 314
Score = 171 bits (433), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 94/214 (43%), Positives = 127/214 (59%), Gaps = 3/214 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L++KP GW+S + +RL+ KK GH GTLDP+ATGLL +C G+ATK
Sbjct: 20 VLLLDKPIGWSSNDALIRAKRLLWAKKAGHTGTLDPLATGLLPLCFGEATKFSQDLLEAD 79
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y V RLG TST DA+ V+ P + E +R A F GEI QVPPM SA+K
Sbjct: 80 KTYETVVRLGIKTSTADAEGEVLSERPVA-VTPEQLRAAVGRFIGEIDQVPPMHSALKKD 138
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQ--NLIFRVTCSKGTYIRSLCADFG 488
G+ +Y+ AR G+++E + R ++I D+ + D + RV CSKGTYIR+L D G
Sbjct: 139 GKPLYEYARAGQTVERAARSVTIRAIDVLATDLDATEPTVTLRVCCSKGTYIRTLGEDLG 198
Query: 489 KALGSCAHLTALRRDSIGQYSADDAWEFKELEEA 522
+ALG AHL ALRR +G + D A + LE A
Sbjct: 199 EALGCGAHLVALRRTQVGSLTLDGAVTLQALEAA 232
>gi|403386821|ref|ZP_10928878.1| tRNA pseudouridine synthase B [Clostridium sp. JC122]
Length = 295
Score = 171 bits (433), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 91/215 (42%), Positives = 131/215 (60%), Gaps = 3/215 (1%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
+ KPK TSF V LR+++ KKVGH GTLDP A G+L VC G++TK++D K Y
Sbjct: 13 IYKPKNMTSFDVVRDLRKILGEKKVGHCGTLDPQACGVLPVCFGRSTKIIDYIMEGTKEY 72
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEK 433
+LGE T T+D + VI+ + +DE ++ SF+G+I QVPPM+SA+KV G+K
Sbjct: 73 VATLKLGEVTDTYDVEGKVIKTFEVKVTEDE-VKAVINSFKGDIKQVPPMYSALKVNGKK 131
Query: 434 MYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKALGS 493
+Y+ AR+G IE + R + I IE D + F+V CSKGTYIRSLC D G+ L
Sbjct: 132 LYELARQGIEIERAARDVKIHDITIENI--DIPYVKFKVRCSKGTYIRSLCYDIGEKLQC 189
Query: 494 CAHLTALRRDSIGQYSADDAWEFKELEEAITKNYF 528
A +T L R S G+++ +++ K+L + + Y
Sbjct: 190 GAVMTDLERTSTGRFTKENSINIKDLHKDNVEQYI 224
>gi|347521890|ref|YP_004779461.1| tRNA pseudouridine synthase B [Lactococcus garvieae ATCC 49156]
gi|385833274|ref|YP_005871049.1| tRNA pseudouridine synthase B [Lactococcus garvieae Lg2]
gi|343180458|dbj|BAK58797.1| tRNA pseudouridine synthase B [Lactococcus garvieae ATCC 49156]
gi|343182427|dbj|BAK60765.1| tRNA pseudouridine synthase B [Lactococcus garvieae Lg2]
Length = 301
Score = 171 bits (433), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 89/214 (41%), Positives = 128/214 (59%), Gaps = 4/214 (1%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
V K GWTSF V KLR ++K KK+GH GTLDP TG+L V VGKAT+L++ + K Y
Sbjct: 7 VYKEAGWTSFDVVAKLRGILKTKKIGHGGTLDPQVTGVLPVAVGKATRLLEYMEEAGKVY 66
Query: 374 SGVFRLGEATSTWDADSPVIQREPW-EHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGE 432
G +G +T T DA+ V++ P + DE+I + F GEI QVPPM+SA+KV G+
Sbjct: 67 EGEVTIGFSTETEDAEGEVLETTPVPSTLSDEEIDEVMTHFVGEIQQVPPMYSAVKVKGK 126
Query: 433 KMYDKARRGESIELSPRRISIFQFDIERSL---EDRQNLIFRVTCSKGTYIRSLCADFGK 489
++Y+ AR G+++E R+++I F + E FRV CSKGTYIR+L +
Sbjct: 127 RLYEYARAGQTVERPKRKVTIKSFVRTSPVTFEEGCARFTFRVACSKGTYIRTLAVNLSH 186
Query: 490 ALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
ALG H++ L+R + + D A +E+E +
Sbjct: 187 ALGYAGHMSKLQRTAANGLNIDQALTLEEVEAMV 220
>gi|359394196|ref|ZP_09187249.1| tRNA pseudouridine synthase B [Halomonas boliviensis LC1]
gi|357971443|gb|EHJ93888.1| tRNA pseudouridine synthase B [Halomonas boliviensis LC1]
Length = 306
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 90/214 (42%), Positives = 128/214 (59%), Gaps = 2/214 (0%)
Query: 307 PFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRY 366
P ++L++KPKG +S ++RRL + +K GH GTLDPMATGLL +C+G+ATK
Sbjct: 9 PVNGVLLLDKPKGVSSNHALQRVRRLFQAQKAGHTGTLDPMATGLLPICLGEATKFSSHL 68
Query: 367 QGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSA 426
K Y LG T T DA+ +I++ + +D+ FRGEI QVPPM+SA
Sbjct: 69 LEADKVYRTRIELGVITDTGDAEGTIIEQHEVPSLSVDDVEAVLTRFRGEIDQVPPMYSA 128
Query: 427 IKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCAD 486
+K G+K+Y+ AR G+ +E + RR+S++ + S E V+CSKGTYIR+L D
Sbjct: 129 LKHQGKKLYELAREGKHVERAARRVSVYDARL-LSFEG-TAFELEVSCSKGTYIRTLAED 186
Query: 487 FGKALGSCAHLTALRRDSIGQYSADDAWEFKELE 520
G+ALG AH++ LRR G + AD W + LE
Sbjct: 187 IGQALGCGAHISQLRRLKTGPFLADAMWTLEALE 220
>gi|317129159|ref|YP_004095441.1| tRNA pseudouridine synthase B [Bacillus cellulosilyticus DSM 2522]
gi|315474107|gb|ADU30710.1| tRNA pseudouridine synthase B [Bacillus cellulosilyticus DSM 2522]
Length = 306
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 90/225 (40%), Positives = 138/225 (61%), Gaps = 6/225 (2%)
Query: 307 PFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRY 366
P G + L KP+G TSF +++++ K+VGH GTLDP G+L +C+G+ATKLV+
Sbjct: 4 PIGILPLW-KPRGMTSFDAVKEVKKIYHTKRVGHTGTLDPDVDGVLPICLGRATKLVEYL 62
Query: 367 QGMIKGYSGVFRLGEATSTWDADSPVI-QREPWEHIKDEDIRKAAASFRGEIWQVPPMFS 425
K Y G LG +T+T DA V+ +++ E I++ED+R+ GEI Q PPM+S
Sbjct: 63 TADKKTYEGEVTLGFSTTTEDASGEVVAEKKVDEKIREEDVRELFNHLIGEITQTPPMYS 122
Query: 426 AIKVGGEKMYDKARRGESIELSPRRISIFQFD----IERSLEDRQNLIFRVTCSKGTYIR 481
AIKV G+++Y+ AR G+ I+ R++SI+ + +E++++ FRVTCSKGTYIR
Sbjct: 123 AIKVKGKRLYEYAREGKIIDRPSRKVSIYHIELVSPVEKTIDKNVKFRFRVTCSKGTYIR 182
Query: 482 SLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAITKN 526
+L G+ G AH+++L R + GQ+ +D E +L KN
Sbjct: 183 TLSVMIGEKFGYPAHMSSLTRTASGQFKKEDCIELHKLRALQEKN 227
>gi|295696161|ref|YP_003589399.1| tRNA pseudouridine synthase B [Kyrpidia tusciae DSM 2912]
gi|295411763|gb|ADG06255.1| tRNA pseudouridine synthase B [Kyrpidia tusciae DSM 2912]
Length = 300
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 94/215 (43%), Positives = 136/215 (63%), Gaps = 5/215 (2%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQG 368
G +VL +KP G TS V G++RR + ++++GH GTLDP ATG+L++CVGKAT++ + G
Sbjct: 3 GVLVL-DKPAGLTSHDVVGRVRRWLGIRRIGHTGTLDPDATGVLVLCVGKATRIAEYLSG 61
Query: 369 MIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
K Y GV LG AT T D+ VI+R P E +R+AAA+ GEI Q PP FSA++
Sbjct: 62 EDKEYIGVLALGAATDTDDSSGEVIERMPSPSADPEALRRAAAALTGEILQRPPAFSAVR 121
Query: 429 VGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLI---FRVTCSKGTYIRSLCA 485
VGG++ Y+ AR G +L R++ +++FD+ R L+ F V CSKGTY+RSLC
Sbjct: 122 VGGKRAYELARAGRPADLPARKVQVYRFDVGMP-TPRGELLEVPFHVACSKGTYVRSLCR 180
Query: 486 DFGKALGSCAHLTALRRDSIGQYSADDAWEFKELE 520
D G +G AH+ +LRR G ++ + A + E +
Sbjct: 181 DLGVKVGIPAHMASLRRVRQGPFTVEQALPWSEAQ 215
>gi|229104372|ref|ZP_04235041.1| tRNA pseudouridine synthase B [Bacillus cereus Rock3-28]
gi|407706270|ref|YP_006829855.1| 2-dehydropantoate 2-reductase [Bacillus thuringiensis MC28]
gi|423615929|ref|ZP_17591763.1| tRNA pseudouridine synthase B [Bacillus cereus VD115]
gi|228679070|gb|EEL33278.1| tRNA pseudouridine synthase B [Bacillus cereus Rock3-28]
gi|401260466|gb|EJR66639.1| tRNA pseudouridine synthase B [Bacillus cereus VD115]
gi|407383955|gb|AFU14456.1| tRNA pseudouridine synthase B [Bacillus thuringiensis MC28]
Length = 307
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 88/218 (40%), Positives = 137/218 (62%), Gaps = 5/218 (2%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+VL++KPKG TS KLR++++ K++GH GTLDP TG+L +CVG+ATK+
Sbjct: 4 VVLLHKPKGMTSHDCVFKLRKILREKRIGHTGTLDPDVTGVLPICVGRATKIAQFLTSET 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V++ + I +++ A+ G I Q PPMFSA+KV
Sbjct: 64 KTYEGEVTLGFSTTTEDASGEVVETTNVDRSITRKEVEGVLAALTGTIEQTPPMFSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDI--ERSLEDRQNLI--FRVTCSKGTYIRSLCA 485
G+K+Y+ AR G+ +E R I+I +F + +R + + +N+ FRVTCSKGTY+R+L
Sbjct: 124 NGKKLYEYARAGQEVERPVRTITIHEFVLLDDREMFEGENISFRFRVTCSKGTYVRTLAV 183
Query: 486 DFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
G+ LG +H++ L R + G++ +D F+E+EE +
Sbjct: 184 MIGEKLGFPSHMSHLVRTASGEFLLEDCISFEEIEENV 221
>gi|124026479|ref|YP_001015594.1| tRNA pseudouridine 55 synthase [Prochlorococcus marinus str.
NATL1A]
gi|189036552|sp|A2C4C0.1|TRUB_PROM1 RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|123961547|gb|ABM76330.1| Putative tRNA pseudouridine 55 synthase [Prochlorococcus marinus
str. NATL1A]
Length = 314
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 80/196 (40%), Positives = 124/196 (63%), Gaps = 2/196 (1%)
Query: 307 PFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRY 366
PFG V+++KP G TS +LR++ ++K+GH+GTLDP TG+L + +G AT+L+
Sbjct: 4 PFG-FVVIDKPSGLTSHDCVNRLRKVFGIRKIGHSGTLDPAVTGVLPIAIGDATRLISYL 62
Query: 367 QGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSA 426
QG K Y+G+ +LG T+T D +I+ + W I DI +FRGEI Q PP+FS+
Sbjct: 63 QGS-KAYTGIIQLGATTNTDDMQGEIIESKAWPLITQNDINYLLENFRGEILQKPPIFSS 121
Query: 427 IKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCAD 486
+ + GE+ Y KAR+GE +L P++++I + ++ +++ L+ V CS GTYIRSL D
Sbjct: 122 VHIKGERAYKKARKGEKFDLIPKKVTINKLNLISWSQNKGELLVDVDCSTGTYIRSLARD 181
Query: 487 FGKALGSCAHLTALRR 502
G +G +L +LRR
Sbjct: 182 IGDKIGCGGYLKSLRR 197
>gi|294815435|ref|ZP_06774078.1| tRNA pseudouridine synthase B [Streptomyces clavuligerus ATCC
27064]
gi|326443787|ref|ZP_08218521.1| tRNA pseudouridine synthase B [Streptomyces clavuligerus ATCC
27064]
gi|294328034|gb|EFG09677.1| tRNA pseudouridine synthase B [Streptomyces clavuligerus ATCC
27064]
Length = 299
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 92/231 (39%), Positives = 129/231 (55%), Gaps = 11/231 (4%)
Query: 298 TELPPTWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVG 357
T+ P DG +V+V+KP G+TS V K+R + + ++VGHAGTLDPMATG+L++ V
Sbjct: 2 TQRPTPPDG----LVIVDKPSGFTSHDVVAKMRGIARTRRVGHAGTLDPMATGVLVLGVE 57
Query: 358 KATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEI 417
+ATKL+ K Y G RLG+ T T DA+ + + + + A+ G I
Sbjct: 58 RATKLLGHLALTEKEYLGTIRLGQTTVTDDAEGEITASADASAVTRQAVDTGVAALTGAI 117
Query: 418 WQVPPMFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDR-------QNLIF 470
QVP SAIK+ G++ Y + R GE E+ R +++ F + EDR +L+
Sbjct: 118 MQVPSKVSAIKIDGKRSYARVRGGEEFEIPARPVTVSSFRVYDMREDRAEDGTPVMDLVV 177
Query: 471 RVTCSKGTYIRSLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
V CS GTYIR+L D G ALG HLTALRR +G Y D A +L+E
Sbjct: 178 SVVCSSGTYIRALARDLGAALGVGGHLTALRRTRVGPYGLDAARTLDQLQE 228
>gi|253755434|ref|YP_003028574.1| tRNA pseudouridine synthase B [Streptococcus suis BM407]
gi|389856493|ref|YP_006358736.1| tRNA pseudouridine synthase B [Streptococcus suis ST1]
gi|403061611|ref|YP_006649827.1| tRNA pseudouridine synthase B [Streptococcus suis S735]
gi|251817898|emb|CAZ55663.1| tRNA pseudouridine synthase B [Streptococcus suis BM407]
gi|353740211|gb|AER21218.1| tRNA pseudouridine synthase B [Streptococcus suis ST1]
gi|402808937|gb|AFR00429.1| tRNA pseudouridine synthase B [Streptococcus suis S735]
Length = 292
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 87/221 (39%), Positives = 130/221 (58%), Gaps = 3/221 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ V K G TS V KLR++++ KK+GH GTLDP TG+L + VGKAT++++ Q
Sbjct: 5 IINVKKEAGMTSHDVVFKLRKILQEKKIGHGGTLDPDVTGVLPIAVGKATRMIEYMQEEG 64
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y G +G +T+T DA +++R P +I ++ + +A SF G I Q+PPM+SA+KV
Sbjct: 65 KIYEGEITIGYSTTTEDASGDLVERTPVLYIAEQAVDEAMTSFVGTITQIPPMYSAVKVK 124
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLE---DRQNLIFRVTCSKGTYIRSLCADF 487
G K+Y+ AR GE +E R+I I+ F+ +E D FRV C KGTY+R+L D
Sbjct: 125 GRKLYEYARAGEEVERPQRQIEIYSFERTSPIELADDCARFTFRVRCGKGTYVRTLSVDL 184
Query: 488 GKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAITKNYF 528
G LG +H++ L R DA +E+ + +N F
Sbjct: 185 GAKLGYASHMSKLERTGSAGMDLADALTLEEISSLVAENDF 225
>gi|228998586|ref|ZP_04158173.1| tRNA pseudouridine synthase B [Bacillus mycoides Rock3-17]
gi|228761054|gb|EEM10013.1| tRNA pseudouridine synthase B [Bacillus mycoides Rock3-17]
Length = 307
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 89/219 (40%), Positives = 135/219 (61%), Gaps = 11/219 (5%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L++KPKG TS KLR++++ K++GH GTLDP TG+L +CVG+ATK+
Sbjct: 4 VLLLHKPKGMTSHDCVFKLRKILREKRIGHTGTLDPDVTGVLPICVGRATKIAQFLTSET 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V++++ I ++ A G I QVPPM+SA+KV
Sbjct: 64 KTYEGEVTLGFSTTTEDASGEVVEKQDVNRLITRAEVETVLAELTGTIEQVPPMYSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQ-------NLIFRVTCSKGTYIRS 482
G+K+Y+ AR G+ +E R I+I +F + L+DR+ + FRVTCSKGTY+R+
Sbjct: 124 NGKKLYEYARAGQEVERPVRVITIHEFVL---LDDREVFEGKNISFRFRVTCSKGTYVRT 180
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
L G+ LG AH++ L R + G++ +D F+E+EE
Sbjct: 181 LAVMIGEKLGFPAHMSHLVRTASGEFLLEDCISFEEIEE 219
>gi|229098279|ref|ZP_04229226.1| tRNA pseudouridine synthase B [Bacillus cereus Rock3-29]
gi|423441459|ref|ZP_17418365.1| tRNA pseudouridine synthase B [Bacillus cereus BAG4X2-1]
gi|423448315|ref|ZP_17425194.1| tRNA pseudouridine synthase B [Bacillus cereus BAG5O-1]
gi|423464533|ref|ZP_17441301.1| tRNA pseudouridine synthase B [Bacillus cereus BAG6O-1]
gi|423533875|ref|ZP_17510293.1| tRNA pseudouridine synthase B [Bacillus cereus HuB2-9]
gi|423540856|ref|ZP_17517247.1| tRNA pseudouridine synthase B [Bacillus cereus HuB4-10]
gi|228685177|gb|EEL39108.1| tRNA pseudouridine synthase B [Bacillus cereus Rock3-29]
gi|401128909|gb|EJQ36592.1| tRNA pseudouridine synthase B [Bacillus cereus BAG5O-1]
gi|401172044|gb|EJQ79265.1| tRNA pseudouridine synthase B [Bacillus cereus HuB4-10]
gi|402418120|gb|EJV50420.1| tRNA pseudouridine synthase B [Bacillus cereus BAG4X2-1]
gi|402420800|gb|EJV53071.1| tRNA pseudouridine synthase B [Bacillus cereus BAG6O-1]
gi|402464094|gb|EJV95794.1| tRNA pseudouridine synthase B [Bacillus cereus HuB2-9]
Length = 307
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 88/218 (40%), Positives = 137/218 (62%), Gaps = 5/218 (2%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+VL++KPKG TS KLR++++ K++GH GTLDP TG+L +CVG+ATK+
Sbjct: 4 VVLLHKPKGMTSHDCVFKLRKILREKRIGHTGTLDPDVTGVLPICVGRATKIAQFLTSET 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V++ + I +++ A+ G I Q PPMFSA+KV
Sbjct: 64 KTYEGEVTLGFSTTTEDASGEVVETTNVDRSISRKEVEGVLAALTGTIEQTPPMFSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDI--ERSLEDRQNLI--FRVTCSKGTYIRSLCA 485
G+K+Y+ AR G+ +E R I+I +F + +R + + +N+ FRVTCSKGTY+R+L
Sbjct: 124 NGKKLYEYARAGQEVERPVRTITIHEFILLDDREMFEGENISFRFRVTCSKGTYVRTLAV 183
Query: 486 DFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
G+ LG +H++ L R + G++ +D F+E+EE +
Sbjct: 184 MIGEKLGFPSHMSHLVRTASGEFLLEDCISFEEIEENV 221
>gi|422858696|ref|ZP_16905346.1| tRNA pseudouridine synthase B [Streptococcus sanguinis SK1057]
gi|327459839|gb|EGF06179.1| tRNA pseudouridine synthase B [Streptococcus sanguinis SK1057]
Length = 292
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 95/224 (42%), Positives = 133/224 (59%), Gaps = 8/224 (3%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ + K G TS KLR+++K KK+GH GTLDP G+L + VGKAT+LV+ Q
Sbjct: 4 IINLRKEAGMTSHDAVFKLRKILKTKKIGHGGTLDPDVVGVLPIAVGKATRLVEFMQEEG 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDED-IRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA +++R P + +E I +A S GEI Q+PPM+SA+KV
Sbjct: 64 KVYEGEITLGCSTTTEDASGDILERTPVTELLEEALIDEAMESMTGEIRQIPPMYSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIER----SLEDRQ-NLIFRVTCSKGTYIRSLC 484
G K+Y+ AR G+ +E R+++I+ F ER S ED Q FRV CSKGTY+R+L
Sbjct: 124 NGRKLYEYARAGQEVERPERQVTIYSF--ERTSPISYEDEQARFRFRVKCSKGTYVRTLS 181
Query: 485 ADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAITKNYF 528
D G LG +H++ L R S S DDA E+ E + + F
Sbjct: 182 VDLGAKLGFASHMSQLTRTSSAGMSLDDALTLDEIAERVAVDDF 225
>gi|441182565|ref|ZP_20970326.1| tRNA pseudouridine synthase B [Streptomyces rimosus subsp. rimosus
ATCC 10970]
gi|440614176|gb|ELQ77480.1| tRNA pseudouridine synthase B [Streptomyces rimosus subsp. rimosus
ATCC 10970]
Length = 324
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 88/220 (40%), Positives = 130/220 (59%), Gaps = 7/220 (3%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G+TS V K+R + + ++VGHAGTLDPMATG+L++ + +ATKL+
Sbjct: 24 LVIVDKPAGFTSHDVVAKMRGMARTRRVGHAGTLDPMATGVLVLGIERATKLLGHLALTE 83
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y G RLG+ + T DA+ + + + I A+ GEI QVP SAIK+
Sbjct: 84 KEYVGTIRLGQTSVTDDAEGEITASKAAHGLDRAAIDAGVATLTGEIMQVPSKVSAIKID 143
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDI----ERSLEDR---QNLIFRVTCSKGTYIRSL 483
G++ Y + R+GE +E+ R +++ F + E ED +L+ V CS GTYIR+L
Sbjct: 144 GKRSYARVRKGEDVEIPARPVTVSSFVVYSAEETEAEDGTPVTDLLVSVECSSGTYIRAL 203
Query: 484 CADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
D G ALG HLTALRR +G Y D A ++L+E++
Sbjct: 204 ARDLGDALGVGGHLTALRRTRVGPYKLDRARTLEQLQESV 243
>gi|423656669|ref|ZP_17631968.1| tRNA pseudouridine synthase B [Bacillus cereus VD200]
gi|401290410|gb|EJR96104.1| tRNA pseudouridine synthase B [Bacillus cereus VD200]
Length = 307
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 89/218 (40%), Positives = 134/218 (61%), Gaps = 5/218 (2%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+VL++KPKG TS KLR++++ K++GH GTLDP TG+L +CVG+ATK+
Sbjct: 4 VVLLHKPKGMTSHDCVFKLRKILREKRIGHTGTLDPDVTGVLPICVGRATKIAQFLTSET 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V++ + + I ++ K A G I Q+PPMFSA+KV
Sbjct: 64 KTYEGEVTLGFSTTTEDASGEVVETKNVDRTITRMEVEKVLAELTGTIEQMPPMFSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQF----DIERSLEDRQNLIFRVTCSKGTYIRSLCA 485
G+K+Y+ AR G+ +E R I+I +F D E + + FRVTCSKGTY+R+L
Sbjct: 124 NGKKLYEYARAGQEVERPVRTITIHEFVLLDDCEVFEGENISFRFRVTCSKGTYVRTLAV 183
Query: 486 DFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
G+ LG +H++ L R + G++ +D F+E+EE +
Sbjct: 184 MIGEKLGFPSHMSHLVRTASGEFLLEDCISFEEIEENV 221
>gi|160892791|ref|ZP_02073581.1| hypothetical protein CLOL250_00322 [Clostridium sp. L2-50]
gi|156865832|gb|EDO59263.1| tRNA pseudouridine synthase B [Clostridium sp. L2-50]
Length = 310
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 94/210 (44%), Positives = 127/210 (60%), Gaps = 5/210 (2%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
V K +G+TSF V KLR ++K KK+GH GTLDPMA G+L+VC+G+ATKL + K Y
Sbjct: 8 VYKEQGYTSFDVVAKLRGILKQKKIGHTGTLDPMAEGVLLVCLGQATKLSEMLIDKDKTY 67
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDE-DIRKAAASFRGEIWQVPPMFSAIKVGGE 432
V LG+ T T D V+ I DE + +A SF G Q+PPM+SAIKV G+
Sbjct: 68 RCVMLLGKTTDTEDVTGKVLTE--TADIPDEASVIEAVNSFIGTYGQIPPMYSAIKVNGK 125
Query: 433 KMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKALG 492
K+Y+ AR+G IE SPR ++I + IE R + F + CSKGTYIRSLC D G+ LG
Sbjct: 126 KLYEYARQGIEIERSPREVTILEVKIEDVSLPR--VTFTIHCSKGTYIRSLCRDIGEKLG 183
Query: 493 SCAHLTALRRDSIGQYSADDAWEFKELEEA 522
A + L R + + +D+ E+E+A
Sbjct: 184 CGAVMEKLVRTEVKNFRVEDSLTLAEIEQA 213
>gi|339009428|ref|ZP_08642000.1| tRNA pseudouridine synthase B [Brevibacillus laterosporus LMG
15441]
gi|338773906|gb|EGP33437.1| tRNA pseudouridine synthase B [Brevibacillus laterosporus LMG
15441]
Length = 310
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 89/221 (40%), Positives = 130/221 (58%), Gaps = 5/221 (2%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQG 368
G +VL +KP G TS K+RR+ + KKVGH GTLDP TG+L +C+ AT++V+ Q
Sbjct: 7 GVLVL-HKPAGMTSHDCVAKIRRIYQTKKVGHTGTLDPDVTGVLPICINNATRIVEYLQE 65
Query: 369 MIKGYSGVFRLGEATSTWDADSPVIQREPWE--HIKDEDIRKAAASFRGEIWQVPPMFSA 426
+ K Y V R+G T+T DA V++ + I E + +A G I Q PPM+SA
Sbjct: 66 LPKAYEVVMRIGSTTTTEDASGEVVETAKVDAASITRERVEEAMKEMLGVIEQTPPMYSA 125
Query: 427 IKVGGEKMYDKARRGESIELSPRRISIFQFDIER--SLEDRQNLIFRVTCSKGTYIRSLC 484
IKV G+++YD AR G +IE R ++I++ + S + ++ F CSKGTY+R+LC
Sbjct: 126 IKVNGQRLYDLAREGITIERKAREVTIYELQLHHIESNAEYVDVSFYCLCSKGTYMRTLC 185
Query: 485 ADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAITK 525
D G+ LG AH+ L R G ++ A F+ELE ++ K
Sbjct: 186 VDLGQKLGYPAHMAKLVRVKSGPFTMQHAHTFEELEASMNK 226
>gi|261367196|ref|ZP_05980079.1| tRNA pseudouridine synthase B [Subdoligranulum variabile DSM 15176]
gi|282570794|gb|EFB76329.1| tRNA pseudouridine synthase B [Subdoligranulum variabile DSM 15176]
Length = 297
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 88/213 (41%), Positives = 124/213 (58%), Gaps = 2/213 (0%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
V+KP GWTSF V KLR + +K+GH+GTLDPMATG+L V +GKAT DR K Y
Sbjct: 10 VDKPAGWTSFDVLAKLRGALGTRKLGHSGTLDPMATGVLAVFIGKATAAADRQLNHDKTY 69
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEK 433
R G+ T T D V++ P I +E++R F GE Q+PPM+SA+K+ G+
Sbjct: 70 EATLRFGQRTDTGDITGTVLETAPVT-IGEEELRAVLPRFMGEQMQLPPMYSAVKINGQP 128
Query: 434 MYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKALGS 493
+Y AR+G+++E +PR I+++ + + + + R+ CSKGTYIR L D GKALG
Sbjct: 129 LYKAARKGQTVERTPRPITVYSIEYLGTPKP-GDYTLRIACSKGTYIRVLAEDIGKALGV 187
Query: 494 CAHLTALRRDSIGQYSADDAWEFKELEEAITKN 526
A L ALRR G++ ++ A K
Sbjct: 188 PATLAALRRTRAGEFEISQCHTLPDILAAAEKG 220
>gi|376287986|ref|YP_005160552.1| tRNA pseudouridine synthase B [Corynebacterium diphtheriae BH8]
gi|371585320|gb|AEX48985.1| tRNA pseudouridine synthase B [Corynebacterium diphtheriae BH8]
Length = 300
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 92/219 (42%), Positives = 128/219 (58%), Gaps = 11/219 (5%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP+G TS V K+RR KKVGHAGTLDPMATG+L++ + + TK +
Sbjct: 10 LVIVDKPQGMTSHDVVSKIRRTFSTKKVGHAGTLDPMATGVLVLGLERGTKFLAHMVAST 69
Query: 371 KGYSGVFRLGEATSTWDADSPVIQR---EPWEHIKDEDIRKAAASFRGEIWQVPPMFSAI 427
K Y+ RLG AT+T D + I + I + I A FRG I Q P SAI
Sbjct: 70 KSYTATIRLGAATTTDDREGETITSASPDQLAGITETKISDAVKQFRGSIMQRPAAVSAI 129
Query: 428 KVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIF-----RVTCSKGTYIRS 482
K+ G++ + + R GE +E+ R ++I ++DI LE R++ F V CS GTYIRS
Sbjct: 130 KIDGKRAHQRVREGEKVEIPARPVTISRYDI---LEIRRDAAFIDIDVEVDCSSGTYIRS 186
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
L D G+ LG HLTALRR +G ++ D+A ++LEE
Sbjct: 187 LARDLGEELGVGGHLTALRRTQVGPFTLDNAVTLEKLEE 225
>gi|349573588|ref|ZP_08885566.1| tRNA pseudouridine synthase B [Neisseria shayeganii 871]
gi|348014894|gb|EGY53760.1| tRNA pseudouridine synthase B [Neisseria shayeganii 871]
Length = 299
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 90/215 (41%), Positives = 123/215 (57%), Gaps = 3/215 (1%)
Query: 307 PFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRY 366
P ++L++KP+G +S T + RRL + K GH G LDP+ATGLL VC G+ATK
Sbjct: 7 PLNGVLLLDKPQGVSSNTALQQARRLYRAAKAGHTGVLDPLATGLLPVCFGEATKFAQYL 66
Query: 367 QGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSA 426
K Y+ +LGEAT+T DA+ ++ + + + A A F G I QVPPMFSA
Sbjct: 67 LDADKAYTATLKLGEATTTGDAEGDIVAHT-ERAVSLPEFQAACAHFTGPIRQVPPMFSA 125
Query: 427 IKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCAD 486
+K G +Y+ ARRG IE R ++++ DI D + V CSKGTYIR+L D
Sbjct: 126 LKHEGRPLYEYARRGIEIERPARHVTLYAIDIREF--DPPRAVIDVRCSKGTYIRTLAED 183
Query: 487 FGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
K LGS AHLTALRR + ++ D+ +L E
Sbjct: 184 LAKHLGSFAHLTALRRTATAGFNIADSHTLPQLAE 218
>gi|299141220|ref|ZP_07034357.1| tRNA pseudouridine synthase B [Prevotella oris C735]
gi|298577180|gb|EFI49049.1| tRNA pseudouridine synthase B [Prevotella oris C735]
Length = 226
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 89/221 (40%), Positives = 134/221 (60%), Gaps = 7/221 (3%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLV------KVKKVGHAGTLDPMATGLLIVCVGKATKL 362
G + ++KP +SF +R ++ KVK +GHAGTLDP+ATG+LI+C GKATK
Sbjct: 6 GEIFAIDKPYRISSFGALAHVRYVLSRTLGHKVK-IGHAGTLDPLATGVLILCTGKATKR 64
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ +QG K Y+ +LG T+++D + V P HI I + F G+I QVPP
Sbjct: 65 IEEFQGQTKEYTATLQLGATTASYDMEHEVNATFPTAHITRALIDEKLQQFIGDIAQVPP 124
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRS 482
FSA+KV G++ Y+ R GE ++LSP++I I + ++ + L RV C KGTYIR+
Sbjct: 125 TFSAVKVNGDRAYELRRAGEEVKLSPKQIHIDEIEVTDFDAGKMLLSIRVVCGKGTYIRA 184
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
L D G+AL S A+LTALRR +G+++ +++ + E I
Sbjct: 185 LARDLGRALDSGAYLTALRRTRVGEFTIGKCLDYEHIREWI 225
>gi|376243074|ref|YP_005133926.1| tRNA pseudouridine synthase B [Corynebacterium diphtheriae CDCE
8392]
gi|376248757|ref|YP_005140701.1| tRNA pseudouridine synthase B [Corynebacterium diphtheriae HC04]
gi|376251556|ref|YP_005138437.1| tRNA pseudouridine synthase B [Corynebacterium diphtheriae HC03]
gi|376257370|ref|YP_005145261.1| tRNA pseudouridine synthase B [Corynebacterium diphtheriae VA01]
gi|376290674|ref|YP_005162921.1| tRNA pseudouridine synthase B [Corynebacterium diphtheriae C7
(beta)]
gi|372104070|gb|AEX67667.1| tRNA pseudouridine synthase B [Corynebacterium diphtheriae C7
(beta)]
gi|372106316|gb|AEX72378.1| tRNA pseudouridine synthase B [Corynebacterium diphtheriae CDCE
8392]
gi|372113060|gb|AEX79119.1| tRNA pseudouridine synthase B [Corynebacterium diphtheriae HC03]
gi|372115325|gb|AEX81383.1| tRNA pseudouridine synthase B [Corynebacterium diphtheriae HC04]
gi|372119887|gb|AEX83621.1| tRNA pseudouridine synthase B [Corynebacterium diphtheriae VA01]
Length = 300
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 92/219 (42%), Positives = 128/219 (58%), Gaps = 11/219 (5%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP+G TS V K+RR KKVGHAGTLDPMATG+L++ + + TK +
Sbjct: 10 LVIVDKPEGMTSHDVVSKIRRTFSTKKVGHAGTLDPMATGVLVLGLERGTKFLAHMVAST 69
Query: 371 KGYSGVFRLGEATSTWDADSPVIQR---EPWEHIKDEDIRKAAASFRGEIWQVPPMFSAI 427
K Y+ RLG AT+T D + I + I + I A FRG I Q P SAI
Sbjct: 70 KSYAATIRLGAATTTDDREGETIASASPDQLAAITETKISDAVKQFRGSIMQRPAAVSAI 129
Query: 428 KVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIF-----RVTCSKGTYIRS 482
K+ G++ + + R GE +E+ R ++I ++DI LE R++ F V CS GTYIRS
Sbjct: 130 KIDGKRAHQRVREGEKVEIPARPVTISRYDI---LEIRRDAAFIDIDVEVDCSSGTYIRS 186
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
L D G+ LG HLTALRR +G ++ D+A ++LEE
Sbjct: 187 LARDLGEELGVGGHLTALRRTQVGPFTLDNAVTLEKLEE 225
>gi|415711927|ref|ZP_11464463.1| tRNA pseudouridine synthase B [Gardnerella vaginalis 55152]
gi|388057660|gb|EIK80485.1| tRNA pseudouridine synthase B [Gardnerella vaginalis 55152]
Length = 400
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 97/227 (42%), Positives = 130/227 (57%), Gaps = 23/227 (10%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++LV+KPKG TS V R L+ K+VGHAGTLDPMATGLLI+ G AT+L++ G
Sbjct: 11 ILLVDKPKGVTSHDVVSCARGLLHTKRVGHAGTLDPMATGLLILGFGNATRLLNYLLGHD 70
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH------IKDEDIRK----AAASFRGEIWQV 420
K Y V RLGE+T+T DAD V+ E+ DE +++ A +F G I Q
Sbjct: 71 KTYEAVIRLGESTNTDDADGDVVSSVNDENGILNSANTDEILKELRCVVAKNFTGHIMQT 130
Query: 421 PPMFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIF---------- 470
P FSAIK+ G + YD AR G+ + L PR + I F + L+ R N+
Sbjct: 131 PTAFSAIKINGVRAYDLAREGKDVHLEPREVVIHDFSL---LDARFNVGVSGVKVVDVRA 187
Query: 471 RVTCSKGTYIRSLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFK 517
V+CS GTYIR+L D G+ LG HL +LRR IG++S +D+ K
Sbjct: 188 SVSCSSGTYIRALARDLGRVLGVGGHLVSLRRTRIGEFSVEDSRVLK 234
>gi|419800361|ref|ZP_14325646.1| tRNA pseudouridine synthase B [Streptococcus parasanguinis F0449]
gi|385695222|gb|EIG25785.1| tRNA pseudouridine synthase B [Streptococcus parasanguinis F0449]
Length = 298
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 92/220 (41%), Positives = 129/220 (58%), Gaps = 4/220 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ V K G TS V KLR+++ KK+GH GTLDP G+L + VGKAT++V+ Q
Sbjct: 4 IINVKKEAGMTSHDVVFKLRKILGTKKIGHGGTLDPDVVGVLPIAVGKATRMVEFMQDEG 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKD-EDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V++R P E D ++ + A GE+ QVPPM+SA+KV
Sbjct: 64 KIYEGEITLGFSTTTEDASGEVVERTPVEAPLDAAEVDRMIAQMVGEMEQVPPMYSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLI---FRVTCSKGTYIRSLCAD 486
G K+Y+ AR GE +E R+++I+ F + L FRV CSKGTYIR+L D
Sbjct: 124 NGRKLYEYARAGEEVERPVRQVTIYDFTRTSEISYEGGLARFRFRVKCSKGTYIRTLSVD 183
Query: 487 FGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAITKN 526
G+ LG AH++ L R S S DDA +E+ E + +
Sbjct: 184 LGQKLGYAAHMSHLTRTSAAGLSLDDALTLEEVAEKVAQG 223
>gi|309791825|ref|ZP_07686312.1| tRNA pseudouridine synthase B [Oscillochloris trichoides DG-6]
gi|308226147|gb|EFO79888.1| tRNA pseudouridine synthase B [Oscillochloris trichoides DG6]
Length = 290
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 89/207 (42%), Positives = 125/207 (60%), Gaps = 3/207 (1%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVK-KVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKG 372
++KP TS V ++RRLV K KVGHAGTLDP A+G+L V +G AT+L++ + KG
Sbjct: 9 IDKPLAMTSHDVVARVRRLVGRKVKVGHAGTLDPAASGVLPVAIGHATRLIEYMAEVRKG 68
Query: 373 YSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGE 432
Y G+ +LG+ T+T DA+ V+ P I A+ RG I QVPPM+SA+ G+
Sbjct: 69 YQGLVQLGQTTTTDDAEGEVLTTAPVPAYTPAQIETVLAALRGTIMQVPPMYSALHHEGQ 128
Query: 433 KMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKALG 492
++YD AR G+ ++L R + I E+ D+ L+ VTC KGTYIR+L D G ALG
Sbjct: 129 RLYDLARAGKVLDLPARPVEIDALSAEQVAHDQ--LLITVTCGKGTYIRALARDIGAALG 186
Query: 493 SCAHLTALRRDSIGQYSADDAWEFKEL 519
AHL +LRR +G +S + A +L
Sbjct: 187 CGAHLASLRRTFVGAFSLESAIPLADL 213
>gi|116492658|ref|YP_804393.1| tRNA pseudouridine synthase B [Pediococcus pentosaceus ATCC 25745]
gi|122265878|sp|Q03FS1.1|TRUB_PEDPA RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|116102808|gb|ABJ67951.1| tRNA pseudouridine synthase B [Pediococcus pentosaceus ATCC 25745]
Length = 299
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 87/218 (39%), Positives = 135/218 (61%), Gaps = 6/218 (2%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ +NK +G TS V K+R +++ KKVGH+GTLDP G+L +CVG+ATK+VD G
Sbjct: 4 IIPINKERGMTSHDVVAKVRGILRTKKVGHSGTLDPSVDGVLPICVGRATKVVDYLMGFG 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPW-EHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T D D V++ + E + DE I + + G + Q+PPM+SA+KV
Sbjct: 64 KVYQGSITLGFSTTTEDLDGEVVETKKLDEPLTDEQINQTLTAMTGTLIQIPPMYSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIER-SLED----RQNLIFRVTCSKGTYIRSLC 484
G K+Y+ AR GE++E R+I ++ F R S+ D +Q + F+V+C KGTY+R+L
Sbjct: 124 KGRKLYEYARAGETVERPQRQIKVYDFVQTRPSIFDAEKGQQTIYFKVSCGKGTYVRTLA 183
Query: 485 ADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEA 522
DFG+ G A ++ L R + G + ++ +LE+A
Sbjct: 184 VDFGRHFGLPAVMSDLSRLASGGFKIEECLTLSDLEQA 221
>gi|299067343|emb|CBJ38540.1| tRNA pseudouridine synthase B [Ralstonia solanacearum CMR15]
Length = 314
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 94/214 (43%), Positives = 127/214 (59%), Gaps = 3/214 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L++KP GW+S + +RL+ KK GH GTLDP+ATGLL +C G+ATK
Sbjct: 20 VLLLDKPIGWSSNDALIRAKRLLWAKKAGHTGTLDPLATGLLPLCFGEATKFSQDLLEAD 79
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y V RLG TST DA+ V+ P + E +R A F GEI QVPPM SA+K
Sbjct: 80 KTYETVVRLGIRTSTADAEGEVLSERPVA-VTPEQLRAAIGRFVGEIDQVPPMHSALKKD 138
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQ--NLIFRVTCSKGTYIRSLCADFG 488
G+ +Y+ AR G+++E + RR++I D+ + D + RV CSKGTYIR+L D G
Sbjct: 139 GKPLYEYARAGQTVERAARRVTIRAIDVLATDLDAAAPTVTLRVCCSKGTYIRTLGEDLG 198
Query: 489 KALGSCAHLTALRRDSIGQYSADDAWEFKELEEA 522
+ LG AHL ALRR +G + D A + LE A
Sbjct: 199 EVLGCGAHLVALRRTQVGSLTLDGAVTLEALEAA 232
>gi|448747668|ref|ZP_21729324.1| tRNA pseudouridine synthase II, TruB [Halomonas titanicae BH1]
gi|445564780|gb|ELY20896.1| tRNA pseudouridine synthase II, TruB [Halomonas titanicae BH1]
Length = 306
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 90/214 (42%), Positives = 128/214 (59%), Gaps = 2/214 (0%)
Query: 307 PFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRY 366
P ++L++KPKG +S ++RRL + +K GH GTLDPMATGLL +C+G+ATK
Sbjct: 9 PVNGVLLLDKPKGVSSNHALQRVRRLFQAQKAGHTGTLDPMATGLLPICLGEATKFSSHL 68
Query: 367 QGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSA 426
K Y LG T T DA+ +I++ + +D+ FRGEI QVPPM+SA
Sbjct: 69 LEADKVYRTRVELGVITDTGDAEGTIIEQHEVPSLSVDDVEAVLTRFRGEIDQVPPMYSA 128
Query: 427 IKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCAD 486
+K G+K+Y+ AR G+ +E + RR+S++ + S E V+CSKGTYIR+L D
Sbjct: 129 LKHQGKKLYELAREGKQVERAARRVSVYDARL-LSFEG-TAFELEVSCSKGTYIRTLAED 186
Query: 487 FGKALGSCAHLTALRRDSIGQYSADDAWEFKELE 520
G+ALG AH++ LRR G + AD W + LE
Sbjct: 187 IGQALGCGAHISQLRRLKTGPFLADAMWTLEALE 220
>gi|384916219|ref|ZP_10016393.1| tRNA pseudouridine synthase B [Methylacidiphilum fumariolicum SolV]
gi|384526377|emb|CCG92266.1| tRNA pseudouridine synthase B [Methylacidiphilum fumariolicum SolV]
Length = 237
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 84/214 (39%), Positives = 131/214 (61%), Gaps = 2/214 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++LV+KPKG+TS + +R+ +KKVGH GTLDPMATGLL++ +GKATK+ D
Sbjct: 6 VLLVDKPKGYTSHDMVDFVRKKFNIKKVGHCGTLDPMATGLLVLVLGKATKIQDLLMSED 65
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y GV RLG++T+T D+D +++ +P + E++++ F G+ +Q+PPM SAIK
Sbjct: 66 KRYEGVLRLGQSTTTQDSDGKIVEEKPVPPLSLEELKQVFDRFVGDFYQIPPMISAIKSH 125
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKA 490
G +Y AR G+ +E PR + ++ + I++ + + F V C KG Y+R+ C D G+A
Sbjct: 126 GVPLYKLAREGKEVERKPRLVHVYSYQIKKW--EPPFVDFEVFCGKGFYVRTYCYDIGQA 183
Query: 491 LGSCAHLTALRRDSIGQYSADDAWEFKELEEAIT 524
LG HL +L R G + A F L+ ++
Sbjct: 184 LGCGGHLFSLVRTQSGNFKLAQALPFDVLKSMLS 217
>gi|422346353|ref|ZP_16427267.1| tRNA pseudouridine synthase B [Clostridium perfringens WAL-14572]
gi|373225898|gb|EHP48225.1| tRNA pseudouridine synthase B [Clostridium perfringens WAL-14572]
Length = 294
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 88/215 (40%), Positives = 126/215 (58%), Gaps = 1/215 (0%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
+ K G TSF V +RR+ K+KKVGH GTLDP A+G+L VC+GKATK++D K Y
Sbjct: 7 IYKNTGMTSFDVVAMVRRVAKMKKVGHTGTLDPAASGVLPVCLGKATKIIDYIMENKKVY 66
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEK 433
+LG T T+D + V++ E HI + I SF G I QVPPM+SA+K G +
Sbjct: 67 RVNLKLGMVTDTYDLEGEVLREEDASHITKDKILNCINSFVGTIDQVPPMYSALKQNGVR 126
Query: 434 MYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKALGS 493
+Y+ AR+G + R+I+I+ + +E N+ V CSKGTYIRSLC D G+ L
Sbjct: 127 LYELARQGIEVHREARKITIYSIE-NIKIESNDNIQMDVCCSKGTYIRSLCYDIGEKLNV 185
Query: 494 CAHLTALRRDSIGQYSADDAWEFKELEEAITKNYF 528
A +TAL R G ++ + A ++L E + + +
Sbjct: 186 GATMTALERIQNGPFTKEQAINIEDLTEELLEKHI 220
>gi|403378759|ref|ZP_10920816.1| tRNA pseudouridine synthase B [Paenibacillus sp. JC66]
Length = 302
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 89/217 (41%), Positives = 131/217 (60%), Gaps = 2/217 (0%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
V KP +TS V K+RRL +K++GH GTLDP TG+L +C+G+AT++V+ Q M K Y
Sbjct: 9 VLKPVDYTSHDVVAKVRRLSGLKRIGHTGTLDPKVTGVLPLCLGRATRVVEYIQDMPKTY 68
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEK 433
+G AT T D +I R + E I + SF+G I Q+PPM+SA+KV GE+
Sbjct: 69 EAQLTIGLATDTEDLTGEIIDRCEKVQVTREQIIETLQSFKGTIEQIPPMYSAVKVNGER 128
Query: 434 MYDKARRGESIELSPRRISIFQFD-IERSLE-DRQNLIFRVTCSKGTYIRSLCADFGKAL 491
+YD AR+G+ ++ R+++++ + ++ LE D + FRV CSKGTYIR+LC+D GK L
Sbjct: 129 LYDLARKGKHVDRPSRQVTLYDIELLDIDLEKDYPEIRFRVQCSKGTYIRTLCSDIGKKL 188
Query: 492 GSCAHLTALRRDSIGQYSADDAWEFKELEEAITKNYF 528
G A ++ L R S G S D E+E ++
Sbjct: 189 GYPAVMSHLVRTSTGSLSLADCLTIDEIEAHCSRGTL 225
>gi|422848896|ref|ZP_16895572.1| tRNA pseudouridine synthase B [Streptococcus sanguinis SK115]
gi|325689917|gb|EGD31921.1| tRNA pseudouridine synthase B [Streptococcus sanguinis SK115]
Length = 292
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 95/224 (42%), Positives = 133/224 (59%), Gaps = 8/224 (3%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ + K G TS KLR+++K KK+GH GTLDP G+L + VGKAT+LV+ Q
Sbjct: 4 IINLRKEAGMTSHDAVFKLRKILKTKKIGHGGTLDPDVVGVLPIAVGKATRLVEFMQEEG 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDED-IRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA +++R P + +E I +A S GEI Q+PPM+SA+KV
Sbjct: 64 KVYEGEITLGCSTTTEDASGDILERTPVTELLEEALIDEAMESMTGEIRQIPPMYSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIER----SLEDRQ-NLIFRVTCSKGTYIRSLC 484
G K+Y+ AR G+ +E R+++I+ F ER S ED Q FRV CSKGTY+R+L
Sbjct: 124 NGRKLYEYARAGQEVERPERQVTIYSF--ERTSPISYEDEQARFRFRVKCSKGTYVRTLS 181
Query: 485 ADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAITKNYF 528
D G LG +H++ L R S S DDA E+ E + + F
Sbjct: 182 VDLGAKLGFASHMSQLTRTSSAGMSLDDALTLDEIAERVAVDDF 225
>gi|282880084|ref|ZP_06288804.1| tRNA pseudouridine synthase B [Prevotella timonensis CRIS 5C-B1]
gi|281305957|gb|EFA97997.1| tRNA pseudouridine synthase B [Prevotella timonensis CRIS 5C-B1]
Length = 235
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 85/219 (38%), Positives = 125/219 (57%), Gaps = 6/219 (2%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVK------KVGHAGTLDPMATGLLIVCVGKATKL 362
G + ++KP G TSF +R ++ K K+GHAGTLDP+ATG+L++C GKATK
Sbjct: 6 GEIFAIDKPYGMTSFGALAHVRYVISRKLGIKRIKIGHAGTLDPLATGVLVLCTGKATKQ 65
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
+++ Q K Y +LG T+++D + PV P EHI E I + F GEI Q PP
Sbjct: 66 IEQLQAHTKEYVCTIQLGATTASYDCEHPVNATYPTEHITLERIEQVLKLFVGEIQQTPP 125
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRS 482
+SA KV GE+ Y+ R GE + L + + I + ++ + L R+ C KGTYIR+
Sbjct: 126 TYSACKVAGERAYNLRRAGEEVALQAKTVRIDEIELIHFDSNTMQLQLRIVCGKGTYIRA 185
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
L D G+ L S A+LT LRR +G + +++ F +E
Sbjct: 186 LARDLGRTLDSGAYLTQLRRTRVGALTIENSINFDHFKE 224
>gi|134102366|ref|YP_001108027.1| hypothetical protein SACE_5919 [Saccharopolyspora erythraea NRRL
2338]
gi|133914989|emb|CAM05102.1| hypothetical protein SACE_5919 [Saccharopolyspora erythraea NRRL
2338]
Length = 536
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 87/211 (41%), Positives = 122/211 (57%), Gaps = 2/211 (0%)
Query: 313 LVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKG 372
+V+KP G TS V ++RR++ +KVGHAGTLDPMATG+L++ + +ATKL+ K
Sbjct: 1 MVDKPAGMTSHDVVARVRRIMGTRKVGHAGTLDPMATGVLVLGLERATKLLGHLAMDTKA 60
Query: 373 YSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGE 432
Y RLG AT+T DA+ V+ + ++ +R A GE+ QVP SA+KV G
Sbjct: 61 YLATIRLGAATTTDDAEGEVLSEADASEVAEDAVRAGVAELTGELQQVPSSVSAVKVNGR 120
Query: 433 KMYDKARRGESIELSPRRISIFQFDI--ERSLEDRQNLIFRVTCSKGTYIRSLCADFGKA 490
+ Y+ AR GE +EL+ R +++ +FD+ R E L V CS GTY+R+L D G
Sbjct: 121 RAYEIARSGEQVELAARPVTVSRFDVLALRRAEAATELDVLVECSSGTYVRALARDLGAG 180
Query: 491 LGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
LG HL ALRR +G + A LEE
Sbjct: 181 LGVGGHLAALRRTRVGPFGLATARTLDALEE 211
>gi|38234052|ref|NP_939819.1| tRNA pseudouridine synthase B [Corynebacterium diphtheriae NCTC
13129]
gi|42559711|sp|P60343.1|TRUB_CORDI RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|38200314|emb|CAE49999.1| tRNA pseudouridine synthase B [Corynebacterium diphtheriae]
Length = 300
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 92/219 (42%), Positives = 128/219 (58%), Gaps = 11/219 (5%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP+G TS V K+RR KKVGHAGTLDPMATG+L++ + + TK +
Sbjct: 10 LVIVDKPQGMTSHDVVSKIRRTFSTKKVGHAGTLDPMATGVLVLGLERGTKFLAHMVAST 69
Query: 371 KGYSGVFRLGEATSTWDADSPVIQR---EPWEHIKDEDIRKAAASFRGEIWQVPPMFSAI 427
K Y+ RLG AT+T D + I + I + I A FRG I Q P SAI
Sbjct: 70 KSYTATIRLGAATTTDDREGETITSASPDQLAGITETKISDAVKQFRGSIMQRPAAVSAI 129
Query: 428 KVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIF-----RVTCSKGTYIRS 482
K+ G++ + + R GE +E+ R ++I ++DI LE R++ F V CS GTYIRS
Sbjct: 130 KIDGKRAHQRVREGEKVEIPARPVTISRYDI---LEIRRDAAFIDIDVEVDCSSGTYIRS 186
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
L D G+ LG HLTALRR +G ++ D+A ++LEE
Sbjct: 187 LARDLGEELGVGGHLTALRRTQVGPFTLDNAVTLEKLEE 225
>gi|376254560|ref|YP_005143019.1| tRNA pseudouridine synthase B [Corynebacterium diphtheriae PW8]
gi|372117644|gb|AEX70114.1| tRNA pseudouridine synthase B [Corynebacterium diphtheriae PW8]
Length = 300
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 92/219 (42%), Positives = 128/219 (58%), Gaps = 11/219 (5%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP+G TS V K+RR KKVGHAGTLDPMATG+L++ + + TK +
Sbjct: 10 LVIVDKPEGMTSHDVVSKIRRTFSTKKVGHAGTLDPMATGVLVLGLERGTKFLAHMVAST 69
Query: 371 KGYSGVFRLGEATSTWDADSPVIQR---EPWEHIKDEDIRKAAASFRGEIWQVPPMFSAI 427
K Y+ RLG AT+T D + I + I + I A FRG I Q P SAI
Sbjct: 70 KSYAATIRLGAATTTDDREGETIASASPDQLAAITETKISDAVKQFRGSIMQRPAAVSAI 129
Query: 428 KVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIF-----RVTCSKGTYIRS 482
K+ G++ + + R GE +E+ R ++I ++DI LE R++ F V CS GTYIRS
Sbjct: 130 KIDGKRAHQRVREGEKVEIPARPVTISRYDI---LEIRRDAAFIDIDVEVDCSSGTYIRS 186
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
L D G+ LG HLTALRR +G ++ D+A ++LEE
Sbjct: 187 LARDLGEELGVGGHLTALRRTQVGPFTLDNAVTLEKLEE 225
>gi|417920576|ref|ZP_12564078.1| tRNA pseudouridine synthase B [Streptococcus australis ATCC 700641]
gi|342828501|gb|EGU62871.1| tRNA pseudouridine synthase B [Streptococcus australis ATCC 700641]
Length = 298
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 90/220 (40%), Positives = 131/220 (59%), Gaps = 4/220 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ + K G TS V KLR+++ KK+GH GTLDP G+L + VGKAT++V+ Q
Sbjct: 4 IINIKKEAGMTSHDVVFKLRKILGTKKIGHGGTLDPDVVGVLPIAVGKATRMVEFMQDEG 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKD-EDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA +++R P E D ++ A GEI QVPPM+SA+KV
Sbjct: 64 KIYEGEITLGFSTTTEDASGEIVERTPVESPLDAAEVDHMIAQMVGEIEQVPPMYSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLI---FRVTCSKGTYIRSLCAD 486
G K+Y+ AR GE +E R+++I+ F + ++ L FRV CSKGTYIR+L D
Sbjct: 124 NGRKLYEYARAGEEVERPVRQVTIYDFTRTSDIGYKEGLARFRFRVKCSKGTYIRTLSVD 183
Query: 487 FGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAITKN 526
G+ LG AH++ L R S S +DA +E+ E +++
Sbjct: 184 LGQKLGYAAHMSHLTRTSAAGLSLEDALTLEEVAEKVSQG 223
>gi|385261427|ref|ZP_10039552.1| tRNA pseudouridine(55) synthase [Streptococcus sp. SK140]
gi|385188429|gb|EIF35915.1| tRNA pseudouridine(55) synthase [Streptococcus sp. SK140]
Length = 292
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 94/219 (42%), Positives = 127/219 (57%), Gaps = 8/219 (3%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ + K G TS KLRR++ KK+GH GTLDP G+L + VGKAT++V+ Q
Sbjct: 4 IINLKKEAGMTSHDAVFKLRRILGTKKIGHGGTLDPDVVGVLPIAVGKATRMVEFMQDEG 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIR-KAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V+ P DE I +A AS G I Q+PPM+SAIKV
Sbjct: 64 KVYEGEITLGYSTTTEDASGEVVAETPVLSPLDEKIVDQAIASLTGPITQIPPMYSAIKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIERS-----LEDRQNLIFRVTCSKGTYIRSLC 484
G K+Y+ AR G+ +E R+++I+ F ER+ +E FRV CSKGTYIR+L
Sbjct: 124 NGRKLYEYARAGQEVERPERQVTIYSF--ERTSPISYMETLARFSFRVKCSKGTYIRTLS 181
Query: 485 ADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
D G+ LG AH++ L R S DDA E+EE +
Sbjct: 182 VDLGEKLGYAAHMSHLTRTSAAGLQLDDALTLNEIEEKV 220
>gi|417917426|ref|ZP_12560985.1| tRNA pseudouridine synthase B [Streptococcus parasanguinis SK236]
gi|342830063|gb|EGU64402.1| tRNA pseudouridine synthase B [Streptococcus parasanguinis SK236]
Length = 309
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 93/238 (39%), Positives = 139/238 (58%), Gaps = 8/238 (3%)
Query: 293 IVSRSTELPPTWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLL 352
+V++ E DG ++ V K G TS V KLR+++ +K+GH GTLDP G+L
Sbjct: 1 MVTQELERANQMDG----IINVKKEAGMTSHDVVFKLRKILGTRKIGHGGTLDPDVVGVL 56
Query: 353 IVCVGKATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKD-EDIRKAAA 411
+ VGKAT++V+ Q K Y G LG +T+T DA +++R P E D E++ + A
Sbjct: 57 PIAVGKATRMVEFMQDEGKVYEGEITLGFSTTTEDASGEIVERTPVEAPLDAEEVDRIIA 116
Query: 412 SFRGEIWQVPPMFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLI-- 469
GE+ QVPPM+SA+KV G K+Y+ AR GE +E R++ I++F + ++L
Sbjct: 117 QMVGEMEQVPPMYSAVKVNGRKLYEYARAGEEVERPVRQVIIYEFTRTSEISYEESLARF 176
Query: 470 -FRVTCSKGTYIRSLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAITKN 526
FRV CSKGTYIR+L D G+ LG AH++ L R S S ++A +E+ E + +
Sbjct: 177 RFRVKCSKGTYIRTLSVDLGQKLGYAAHMSHLTRTSAAGLSLEEALTIEEVAEKVAQG 234
>gi|168207527|ref|ZP_02633532.1| tRNA pseudouridine synthase B [Clostridium perfringens E str.
JGS1987]
gi|170661137|gb|EDT13820.1| tRNA pseudouridine synthase B [Clostridium perfringens E str.
JGS1987]
Length = 294
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 87/215 (40%), Positives = 128/215 (59%), Gaps = 1/215 (0%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
+ K G TSF V +RR+ K+KKVGH GTLDP A+G+L VC+GKATK++D K Y
Sbjct: 7 IYKNTGMTSFDVVAMVRRVAKMKKVGHTGTLDPAASGVLPVCLGKATKIIDYIMENKKVY 66
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEK 433
+LG T T+D + V++ + HI ++I SF G I QVPPM+SA+K G +
Sbjct: 67 RVNLKLGMVTDTYDLEGEVLREKDASHITKDEILNCINSFVGTIDQVPPMYSALKQNGVR 126
Query: 434 MYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKALGS 493
+Y+ AR+G + R+I+I+ + +E N+ V CSKGTYIRSLC D G+ L
Sbjct: 127 LYELARQGIEVHREARKITIYSIE-NIKIESNDNIQMDVCCSKGTYIRSLCYDIGEKLNV 185
Query: 494 CAHLTALRRDSIGQYSADDAWEFKELEEAITKNYF 528
A +TAL R G ++ ++A ++L E + + +
Sbjct: 186 GATMTALERIQNGPFTKEEAINIEDLTEELLEKHI 220
>gi|337281749|ref|YP_004621220.1| tRNA pseudouridine synthase B [Streptococcus parasanguinis ATCC
15912]
gi|335369342|gb|AEH55292.1| tRNA pseudouridine synthase B [Streptococcus parasanguinis ATCC
15912]
Length = 298
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 91/220 (41%), Positives = 129/220 (58%), Gaps = 4/220 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ V K G TS V KLR+++ KK+GH GTLDP G+L + VGKAT++V+ Q
Sbjct: 4 IINVKKEAGMTSHDVVFKLRKILGTKKIGHGGTLDPDVVGVLPIAVGKATRMVEFMQDEG 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKD-EDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA +++R P E D ++ A GEI QVPPM+SA+KV
Sbjct: 64 KIYEGEITLGFSTTTEDASGEIVERTPVEAPLDAAEVDSTIAQMVGEIKQVPPMYSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLI---FRVTCSKGTYIRSLCAD 486
G K+Y+ AR GE +E R+++I+ F + + L FRV CSKGTYIR+L D
Sbjct: 124 NGRKLYEYARAGEEVERPVRQVTIYDFTRTSEISYEEGLARFRFRVKCSKGTYIRTLSVD 183
Query: 487 FGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAITKN 526
G+ LG AH++ L R S DDA +E+ E +++
Sbjct: 184 LGQQLGYAAHMSHLTRTSAAGLLLDDALTLEEVAEKVSQG 223
>gi|183601977|ref|ZP_02963346.1| tRNA pseudouridine synthase B [Bifidobacterium animalis subsp.
lactis HN019]
gi|219682889|ref|YP_002469272.1| tRNA pseudouridine synthase B [Bifidobacterium animalis subsp.
lactis AD011]
gi|241190466|ref|YP_002967860.1| tRNA pseudouridine synthase B [Bifidobacterium animalis subsp.
lactis Bl-04]
gi|241195872|ref|YP_002969427.1| tRNA pseudouridine synthase B [Bifidobacterium animalis subsp.
lactis DSM 10140]
gi|384190698|ref|YP_005576446.1| tRNA pseudouridine synthase B [Bifidobacterium animalis subsp.
lactis BB-12]
gi|384191840|ref|YP_005577587.1| tRNA pseudouridine(38-40) synthase [Bifidobacterium animalis subsp.
lactis CNCM I-2494]
gi|384193466|ref|YP_005579212.1| tRNA pseudouridine synthase B [Bifidobacterium animalis subsp.
lactis BLC1]
gi|384195022|ref|YP_005580767.1| tRNA pseudouridine synthase B [Bifidobacterium animalis subsp.
lactis V9]
gi|387820333|ref|YP_006300376.1| tRNA pseudouridine synthase B [Bifidobacterium animalis subsp.
lactis B420]
gi|387821999|ref|YP_006301948.1| tRNA pseudouridine synthase B [Bifidobacterium animalis subsp.
lactis Bi-07]
gi|423678988|ref|ZP_17653864.1| tRNA pseudouridine synthase B [Bifidobacterium animalis subsp.
lactis BS 01]
gi|183218862|gb|EDT89504.1| tRNA pseudouridine synthase B [Bifidobacterium animalis subsp.
lactis HN019]
gi|219620539|gb|ACL28696.1| tRNA pseudouridine synthase B [Bifidobacterium animalis subsp.
lactis AD011]
gi|240248858|gb|ACS45798.1| tRNA pseudouridine synthase B [Bifidobacterium animalis subsp.
lactis Bl-04]
gi|240250426|gb|ACS47365.1| tRNA pseudouridine synthase B [Bifidobacterium animalis subsp.
lactis DSM 10140]
gi|289178190|gb|ADC85436.1| tRNA pseudouridine synthase B [Bifidobacterium animalis subsp.
lactis BB-12]
gi|295793453|gb|ADG32988.1| tRNA pseudouridine synthase B [Bifidobacterium animalis subsp.
lactis V9]
gi|340364577|gb|AEK29868.1| tRNA pseudouridine(38-40) synthase [Bifidobacterium animalis subsp.
lactis CNCM I-2494]
gi|345282325|gb|AEN76179.1| tRNA pseudouridine synthase B [Bifidobacterium animalis subsp.
lactis BLC1]
gi|366042177|gb|EHN18658.1| tRNA pseudouridine synthase B [Bifidobacterium animalis subsp.
lactis BS 01]
gi|386653034|gb|AFJ16164.1| tRNA pseudouridine synthase B [Bifidobacterium animalis subsp.
lactis B420]
gi|386654607|gb|AFJ17736.1| tRNA pseudouridine synthase B [Bifidobacterium animalis subsp.
lactis Bi-07]
Length = 350
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 94/233 (40%), Positives = 133/233 (57%), Gaps = 16/233 (6%)
Query: 305 DGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVD 364
D +++V+KP+G TS + +R + +KVGHAGTLDPMATG L++ VG AT+L+
Sbjct: 7 DAKVNGVLIVDKPQGVTSHDIVAAVRAALHTRKVGHAGTLDPMATGALVIGVGHATRLLQ 66
Query: 365 RYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHI--KDEDIRKAAAS-FRGEIWQVP 421
K YS R G+ T+T DAD ++RE + E +R+A A+ + G+I Q+P
Sbjct: 67 YIVEHTKTYSATIRFGQRTTTDDADGEFVEREAEAAVLPTLEQVREAVANEYTGDIEQIP 126
Query: 422 PMFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQ----------NLIFR 471
SAIKV G++ YD AR G +EL RR+++ FD+ L RQ ++ R
Sbjct: 127 NAVSAIKVNGQRAYDLAREGRHVELKARRVTVHAFDV---LGGRQTQAANGTPVLDVDVR 183
Query: 472 VTCSKGTYIRSLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAIT 524
VTCS GTYIR+L D G AHLT LRR+++G + DA + EA T
Sbjct: 184 VTCSAGTYIRALARDLGNDFHCGAHLTRLRREAVGAFRVRDARIVRAHAEART 236
>gi|300087635|ref|YP_003758157.1| tRNA pseudouridine synthase B [Dehalogenimonas lykanthroporepellens
BL-DC-9]
gi|299527368|gb|ADJ25836.1| tRNA pseudouridine synthase B [Dehalogenimonas lykanthroporepellens
BL-DC-9]
Length = 304
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 91/218 (41%), Positives = 128/218 (58%), Gaps = 6/218 (2%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
++KP G TSF V +LRR++ ++GHAGTLDP+ATG+L V VG AT+ ++ + K Y
Sbjct: 13 IDKPAGMTSFQVVARLRRVIGRCRIGHAGTLDPLATGVLPVAVGAATRTIEFHHRHPKTY 72
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEK 433
G AT T+DA+ ++ + +K +I +A A FRGEI QVPP++SA+K G
Sbjct: 73 RAEILFGIATDTYDAEGKIVSQADASSLKPAEIIQALADFRGEIQQVPPIYSALKQQGRP 132
Query: 434 MYDKARRGESIELSPRRISIFQFD-IERSLEDRQNLIFRVTCSKGTYIRSLCADFGKALG 492
MY R G S+ PRR++IF+ + +E L ++ V CS GTYIRSL D G+ALG
Sbjct: 133 MYAIVRSGGSVSPEPRRVNIFRLEAVEVELP---TVVLEVECSGGTYIRSLAHDLGQALG 189
Query: 493 SCAHLTALRRDSIGQYSADDAWEFKELE--EAITKNYF 528
AHL ALRR + G + + A L EA+
Sbjct: 190 VGAHLRALRRTAYGPFGIETALGSNRLTTPEAVAAGML 227
>gi|404405081|ref|ZP_10996665.1| tRNA pseudouridine synthase B [Alistipes sp. JC136]
Length = 241
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 95/222 (42%), Positives = 135/222 (60%), Gaps = 7/222 (3%)
Query: 309 GTMVLVNKPKGWTSFTVCGK----LRRLVKVK-KVGHAGTLDPMATGLLIVCVGKATKLV 363
G + +++KP WTS V K LR+L K KVGHAGTLDP+A+G+L+VC+G+ATKLV
Sbjct: 18 GYIAVLDKPLRWTSTDVVRKVKFALRKLGYRKIKVGHAGTLDPLASGILLVCIGRATKLV 77
Query: 364 DRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPM 423
D Q K Y LG T ++D + + Q P+EHI E + +A AS GE Q PP+
Sbjct: 78 DALQAEEKEYIADVMLGATTPSYDLEHEIDQTYPYEHITREAVEEALASLTGERLQTPPV 137
Query: 424 FSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSL 483
+SA K+ G + Y+ AR GE + + I+I++ +I R + RV CSKGTYIRSL
Sbjct: 138 YSAKKIEGTRAYELARAGEEVAVRQALITIYEMEIVEYALPRVRI--RVRCSKGTYIRSL 195
Query: 484 CADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAITK 525
+ G+AL S AHL++LRR G ++ + A+E + E + K
Sbjct: 196 AHEIGQALRSGAHLSSLRRTRSGGFTLEKAYELDDFLENLQK 237
>gi|153940367|ref|YP_001391713.1| tRNA pseudouridine synthase B [Clostridium botulinum F str.
Langeland]
gi|384462723|ref|YP_005675318.1| tRNA pseudouridine synthase B [Clostridium botulinum F str. 230613]
gi|189036463|sp|A7GG03.1|TRUB_CLOBL RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|152936263|gb|ABS41761.1| tRNA pseudouridine synthase B [Clostridium botulinum F str.
Langeland]
gi|295319740|gb|ADG00118.1| tRNA pseudouridine synthase B [Clostridium botulinum F str. 230613]
Length = 289
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 93/215 (43%), Positives = 131/215 (60%), Gaps = 3/215 (1%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
V KPKG TSF V +R++ K+KKVGH GTLDP+A+G+L +C+GKATK+VD K Y
Sbjct: 7 VLKPKGITSFDVVRDIRKIAKIKKVGHTGTLDPLASGVLPICIGKATKIVDYIMEGTKTY 66
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEK 433
+LG T T+D + V++ E ++ ++ K + G+I QVPPM+SA+K+ G+K
Sbjct: 67 RVEMKLGTTTDTYDREGTVLE-EKEINLTPIEVEKTIKKYIGDIDQVPPMYSALKINGQK 125
Query: 434 MYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKALGS 493
+YD AR+G IE R+I I+ I D +IF V CSKGTYIRSLC D GK L S
Sbjct: 126 LYDLARKGIEIEREARKIHIYDICILSI--DLPYVIFDVKCSKGTYIRSLCFDIGKDLDS 183
Query: 494 CAHLTALRRDSIGQYSADDAWEFKELEEAITKNYF 528
A + L+R ++ +A + ++L E K Y
Sbjct: 184 GAVMWNLQRLEASPFNIKEAIKLEDLNEENIKQYI 218
>gi|398782102|ref|ZP_10545933.1| tRNA pseudouridine synthase B [Streptomyces auratus AGR0001]
gi|396996997|gb|EJJ07975.1| tRNA pseudouridine synthase B [Streptomyces auratus AGR0001]
Length = 326
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 89/224 (39%), Positives = 128/224 (57%), Gaps = 8/224 (3%)
Query: 307 PFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRY 366
P G +V+V+KP G+TS V K+R + + ++VGHAGTLDPMATG+L++ + +ATKL+
Sbjct: 25 PAG-LVIVDKPAGFTSHDVVAKMRGMARTRRVGHAGTLDPMATGVLVLGIERATKLLGHL 83
Query: 367 QGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSA 426
K Y G RLG+ T T DA+ + + + EDI A G I QVP SA
Sbjct: 84 ALTEKEYVGTIRLGQTTITDDAEGEITASKAAHGLAREDIDAGIARLSGAIMQVPSKVSA 143
Query: 427 IKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQ-------NLIFRVTCSKGTY 479
IK+ G++ Y + R GE +E+ R +++ F + + E +L+ V CS GTY
Sbjct: 144 IKIDGKRSYSRVRDGEDVEIPARPVTVSSFVLHSAHETEAEDGTPVTDLLVSVECSSGTY 203
Query: 480 IRSLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
IR+L D G LG HLTALRR +G Y D A ++L+ A+
Sbjct: 204 IRALARDLGAGLGVGGHLTALRRTRVGPYKLDRARTLEQLQAAV 247
>gi|384086168|ref|ZP_09997343.1| tRNA pseudouridine synthase B [Acidithiobacillus thiooxidans ATCC
19377]
Length = 293
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 91/212 (42%), Positives = 131/212 (61%), Gaps = 5/212 (2%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L++KP+G TS + +R++ +KK GH G+LDP+ATGLL++ G+ATK+ D
Sbjct: 7 LLLLDKPEGLTSNATLQRAKRIMGIKKAGHTGSLDPIATGLLVLLFGEATKVSDYILNAD 66
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y RLG+ TST D + +++ E ++ DI F GEI Q+PPM+SAIK G
Sbjct: 67 KSYRATLRLGQTTSTGDREGEILE-EKAVTVERADIEAMLPRFLGEIAQIPPMYSAIKQG 125
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQN-LIFRVTCSKGTYIRSLCADFGK 489
G+ +Y+ AR+G +E +PR++ I D R +E N L+ V CSKGTYIRSL D G
Sbjct: 126 GKPLYELARKGIEVERAPRQVRI---DGLRLIEFTGNRLVMDVDCSKGTYIRSLAMDLGA 182
Query: 490 ALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
ALG AH+ ALRR G + +DA+ + L E
Sbjct: 183 ALGCGAHVEALRRTCTGPFRIEDAFTLEALAE 214
>gi|422879086|ref|ZP_16925552.1| tRNA pseudouridine synthase B [Streptococcus sanguinis SK1059]
gi|422928932|ref|ZP_16961874.1| tRNA pseudouridine synthase B [Streptococcus sanguinis ATCC 29667]
gi|422931904|ref|ZP_16964835.1| tRNA pseudouridine synthase B [Streptococcus sanguinis SK340]
gi|332366480|gb|EGJ44228.1| tRNA pseudouridine synthase B [Streptococcus sanguinis SK1059]
gi|339615796|gb|EGQ20464.1| tRNA pseudouridine synthase B [Streptococcus sanguinis ATCC 29667]
gi|339619337|gb|EGQ23918.1| tRNA pseudouridine synthase B [Streptococcus sanguinis SK340]
Length = 292
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 95/224 (42%), Positives = 133/224 (59%), Gaps = 8/224 (3%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ + K G TS KLR+++K KK+GH GTLDP G+L + VGKAT+LV+ Q
Sbjct: 4 IINLRKEAGMTSHDAVFKLRKILKTKKIGHGGTLDPDVVGVLPIAVGKATRLVEFMQEEG 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDED-IRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA +++R P + +E I +A S GEI Q+PPM+SA+KV
Sbjct: 64 KIYEGEITLGCSTTTEDASGDLLERTPVTELLEEALIDEAMESMTGEIRQIPPMYSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIER----SLEDRQ-NLIFRVTCSKGTYIRSLC 484
G K+Y+ AR G+ +E R+++I+ F ER S ED Q FRV CSKGTY+R+L
Sbjct: 124 NGRKLYEYARAGQKVERPERQVTIYSF--ERTSPISYEDEQARFRFRVKCSKGTYVRTLS 181
Query: 485 ADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAITKNYF 528
D G LG +H++ L R S S DDA E+ E + + F
Sbjct: 182 VDLGAKLGFASHMSQLTRTSSAGMSVDDALTLDEIAERVAVDDF 225
>gi|340755865|ref|ZP_08692517.1| tRNA pseudouridine synthase B [Fusobacterium sp. D12]
gi|421500587|ref|ZP_15947580.1| tRNA pseudouridine(55) synthase [Fusobacterium necrophorum subsp.
funduliforme Fnf 1007]
gi|313686543|gb|EFS23378.1| tRNA pseudouridine synthase B [Fusobacterium sp. D12]
gi|402267753|gb|EJU17147.1| tRNA pseudouridine(55) synthase [Fusobacterium necrophorum subsp.
funduliforme Fnf 1007]
Length = 285
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 83/213 (38%), Positives = 133/213 (62%), Gaps = 2/213 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++V K KG +SF V LR++++ +K+GH GTLDP+ATG+LI+CVGKAT+L +
Sbjct: 4 IIVVKKEKGISSFDVIRSLRKILQERKIGHTGTLDPLATGVLILCVGKATRLAQEIEAQE 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y G T T+D + V+ + + E+ K ++G+I QVPPM+SAIK+
Sbjct: 64 KIYEAEMEFGYQTDTYDLEGRVVAESLKKKVSREEFEKILEKWKGDILQVPPMYSAIKLQ 123
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKA 490
G+K+Y+ AR+G +E R++++F+ + + ++ +V SKGTYIRSL D GK
Sbjct: 124 GKKLYELARKGVEVEREARKVTVFEIHTLEFQQTKAKILTKV--SKGTYIRSLIHDIGKD 181
Query: 491 LGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
LGS A +TAL R +G+++ +A+ E+ + I
Sbjct: 182 LGSFATMTALNRIQVGEHALKNAYTISEIHDKI 214
>gi|110803856|ref|YP_698970.1| tRNA pseudouridine synthase B [Clostridium perfringens SM101]
gi|123047320|sp|Q0SSD7.1|TRUB_CLOPS RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|110684357|gb|ABG87727.1| tRNA pseudouridine synthase B [Clostridium perfringens SM101]
Length = 294
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 88/215 (40%), Positives = 127/215 (59%), Gaps = 1/215 (0%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
+ K G TSF V +RR+ K+KKVGH GTLDP A+G+L VC+GKATK++D K Y
Sbjct: 7 IYKNTGMTSFDVVAMVRRVAKMKKVGHTGTLDPEASGVLPVCLGKATKIIDYIMENKKVY 66
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEK 433
+LG T T+D + V++ E HI ++I SF G I QVPPM+SA+K G +
Sbjct: 67 RVNLKLGMVTDTYDLEGEVLREEDASHITKDEILNCINSFVGTIDQVPPMYSALKQNGVR 126
Query: 434 MYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKALGS 493
+Y+ AR+G + R+I+I+ + +E N+ V CSKGTYIRSLC D G+ L
Sbjct: 127 LYELARQGIEVHREARKITIYSIE-NIKIESNDNIQMDVCCSKGTYIRSLCYDIGEKLNV 185
Query: 494 CAHLTALRRDSIGQYSADDAWEFKELEEAITKNYF 528
A +TAL R G + ++A ++L E + + +
Sbjct: 186 GATMTALERIQNGPFIKEEAINIEDLTEELLEKHI 220
>gi|259503130|ref|ZP_05746032.1| tRNA pseudouridine synthase B [Lactobacillus antri DSM 16041]
gi|259168996|gb|EEW53491.1| tRNA pseudouridine synthase B [Lactobacillus antri DSM 16041]
Length = 317
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 86/218 (39%), Positives = 132/218 (60%), Gaps = 5/218 (2%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ + K +G TSF +LRR++K +K+GH+GTLDP G+L +CVG ATK V+
Sbjct: 22 IIPLYKERGMTSFDCVSRLRRILKTRKIGHSGTLDPAVDGVLPICVGNATKAVEYLMQSG 81
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G +G AT T D D V+ + P + DE +R A A G+I QVPPM+SA+KV
Sbjct: 82 KIYQGELVIGRATETEDFDGRVVAQTPVPAPLSDEQVRAAMAKLTGKITQVPPMYSAVKV 141
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIERSLEDR----QNLIFRVTCSKGTYIRSLCA 485
G+++Y+ AR GE++E R+++I +F + RS D+ Q++ F+V CSKGTYIR+L
Sbjct: 142 NGKRLYEYARAGETVERPARQVTITEFTLVRSHYDQEHQEQHVFFKVACSKGTYIRTLVV 201
Query: 486 DFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
D + LG + L R + G ++ D +++ A+
Sbjct: 202 DLARQLGYPGAMKWLTRLASGGFTLDQTLSLADIQTAV 239
>gi|289768758|ref|ZP_06528136.1| tRNA pseudouridine synthase B [Streptomyces lividans TK24]
gi|289698957|gb|EFD66386.1| tRNA pseudouridine synthase B [Streptomyces lividans TK24]
Length = 301
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 95/234 (40%), Positives = 132/234 (56%), Gaps = 11/234 (4%)
Query: 298 TELPPTWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVG 357
TE T DG +V+V+KP G+TS V K+R + + ++VGHAGTLDPMATG+L++ V
Sbjct: 2 TEKHTTPDG----LVIVDKPSGFTSHDVVAKMRGIARTRRVGHAGTLDPMATGVLVLGVE 57
Query: 358 KATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEI 417
+ATKL+ K Y G RLG+ T T DA+ + + E I A G+I
Sbjct: 58 RATKLLGHLALTEKEYLGTIRLGQTTLTDDAEGEITGSRDASKVTREAIDAGVAELSGDI 117
Query: 418 WQVPPMFSAIKVGGEKMYDKARRGESIELSPRRISIFQF---DIERSLEDRQ----NLIF 470
QVP SAIK+ G + Y +AR GE E+ R +++ F D+ ++ D +L+
Sbjct: 118 MQVPSKVSAIKIKGVRSYKRAREGEEFEIPARPVTVSSFAVYDVRDAVADDGTPVLDLVV 177
Query: 471 RVTCSKGTYIRSLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAIT 524
VTCS GTYIR+L D G LG HLTALRR +G Y D A +L++ +T
Sbjct: 178 SVTCSSGTYIRALARDLGAGLGVGGHLTALRRTRVGPYKLDGARTLDQLQQELT 231
>gi|229496096|ref|ZP_04389818.1| tRNA pseudouridine synthase B [Porphyromonas endodontalis ATCC
35406]
gi|229316992|gb|EEN82903.1| tRNA pseudouridine synthase B [Porphyromonas endodontalis ATCC
35406]
Length = 261
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 89/218 (40%), Positives = 127/218 (58%), Gaps = 8/218 (3%)
Query: 308 FGTMVLVNKPKGWTSFTVCGKLRRLVKVK------KVGHAGTLDPMATGLLIVCVGKATK 361
G+++ V+KP WTSF V + R +VK KVGH GTLDP ATGLL++C G+ATK
Sbjct: 23 MGSIIAVDKPLDWTSFDVVNRFRIMVKQTVGLKKIKVGHTGTLDPKATGLLLLCTGRATK 82
Query: 362 LVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVP 421
+++ K Y + G T ++D + P P+EHI + +A F G QVP
Sbjct: 83 QIEQLMLNRKEYVATLKFGATTPSFDLEHPEDAHYPYEHITQGMLEEALQEFLGTTLQVP 142
Query: 422 PMFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIR 481
P+FSA+ VGG++ YD AR+G+ +L + I+I + ++ L RV+C KGTYIR
Sbjct: 143 PIFSAVSVGGKRAYDLARKGKDCQLEGKPITIHELEVVSFEPPYATL--RVSCGKGTYIR 200
Query: 482 SLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKEL 519
SL D G+ L S A+LTALRR +G +D+ +EL
Sbjct: 201 SLARDLGERLQSGAYLTALRRTQLGNVRVEDSLTLEEL 238
>gi|386585969|ref|YP_006082371.1| tRNA pseudouridine synthase B [Streptococcus suis D12]
gi|353738115|gb|AER19123.1| tRNA pseudouridine synthase B [Streptococcus suis D12]
Length = 292
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 86/221 (38%), Positives = 129/221 (58%), Gaps = 3/221 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ V K G TS V KLR++++ KK+GH GTLDP TG+L + VGKAT++++ Q
Sbjct: 5 IINVKKEAGMTSHDVVFKLRKILQEKKIGHGGTLDPDVTGVLPIAVGKATRMIEYMQEEG 64
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y G +G +T+T DA +++R P +I ++ + + SF G I Q+PPM+SA+KV
Sbjct: 65 KIYEGEITIGYSTTTEDASGDLVERTPVLYIAEQAVDEVMTSFVGTITQIPPMYSAVKVN 124
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLE---DRQNLIFRVTCSKGTYIRSLCADF 487
G K+Y+ AR GE +E R+I I+ F+ +E D FRV C KGTY+R+L D
Sbjct: 125 GRKLYEYARAGEEVERPQRQIEIYSFERTSPIELADDCAQFTFRVRCGKGTYVRTLSVDL 184
Query: 488 GKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAITKNYF 528
G LG +H++ L R DA +E+ + +N F
Sbjct: 185 GAKLGYASHMSKLERTGSAGMDLADALTLEEISSLVAENDF 225
>gi|373116098|ref|ZP_09530256.1| tRNA pseudouridine synthase B [Lachnospiraceae bacterium 7_1_58FAA]
gi|371669725|gb|EHO34822.1| tRNA pseudouridine synthase B [Lachnospiraceae bacterium 7_1_58FAA]
Length = 288
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 90/213 (42%), Positives = 136/213 (63%), Gaps = 4/213 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++++KP+ WTS VC K+R ++ ++VGHAGTLDPMATG+L V VG+AT+ V+
Sbjct: 5 IIVIDKPQEWTSMDVCAKIRGVLHERRVGHAGTLDPMATGVLPVFVGRATRAVEFASESE 64
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y +LG T+T D V++ P E + + A A+FRGEI Q+PPM+SA+K
Sbjct: 65 KEYIAGLKLGVVTNTQDTTGQVVEERPVEADR-AALEGALAAFRGEITQIPPMYSALKRD 123
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDI-ERSLEDRQNLIFRVTCSKGTYIRSLCADFGK 489
G+K+Y+ AR G+ +E +PR ++I ++ +++ DR L RV CSKGTY+R+LC D G
Sbjct: 124 GKKLYELARAGKEVERAPRPVTIHALEVLDQTGPDRYTL--RVRCSKGTYVRTLCHDIGA 181
Query: 490 ALGSCAHLTALRRDSIGQYSADDAWEFKELEEA 522
ALG ++ALRR +S +A + L +A
Sbjct: 182 ALGCGGCMSALRRTEAAGFSLAEAVPLEALLDA 214
>gi|402300756|ref|ZP_10820214.1| tRNA pseudouridine 5S synthase [Bacillus alcalophilus ATCC 27647]
gi|401724113|gb|EJS97508.1| tRNA pseudouridine 5S synthase [Bacillus alcalophilus ATCC 27647]
Length = 308
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 90/213 (42%), Positives = 130/213 (61%), Gaps = 8/213 (3%)
Query: 316 KPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSG 375
KP G TS KLRRL + KK+GH GTLDP TG+L +C+GKATK+ K Y
Sbjct: 11 KPAGMTSHDCVAKLRRLFQTKKIGHTGTLDPAVTGVLPICIGKATKVAQYMSDYAKAYEA 70
Query: 376 VFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEKM 434
+G AT+T D ++ + + I + I + ASF GEI Q PPM+SA+KV G ++
Sbjct: 71 EVTIGFATTTEDQTGETVEEKAVTNSISSQKIDEVLASFLGEINQTPPMYSAVKVKGRRL 130
Query: 435 YDKARRGESIELSPRRISIFQF----DIERSLEDRQNLIFR--VTCSKGTYIRSLCADFG 488
YD AR+GE ++ R ++I + D++ + +D+Q L FR V CSKGTY+R+L D G
Sbjct: 131 YDYARKGEVVDRPSRIVTIEEINRLGDVQWN-QDKQTLCFRLFVKCSKGTYVRTLAVDIG 189
Query: 489 KALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
K LG AH++ L+R S G ++ +D F+E+E+
Sbjct: 190 KKLGFPAHMSKLQRVSSGPFTLEDCLSFEEIEQ 222
>gi|373459715|ref|ZP_09551482.1| tRNA pseudouridine synthase B [Caldithrix abyssi DSM 13497]
gi|371721379|gb|EHO43150.1| tRNA pseudouridine synthase B [Caldithrix abyssi DSM 13497]
Length = 244
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 86/214 (40%), Positives = 128/214 (59%), Gaps = 4/214 (1%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQG 368
G + L+NKP+ WTSF V K+R +K+KKVGHAGTLDP ATGLLIV G+ T+ + ++
Sbjct: 18 GFIALINKPQDWTSFDVVNKIRHALKIKKVGHAGTLDPFATGLLIVGAGRGTRALSQFMN 77
Query: 369 MIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
+ K Y V RLG T T+D V++ + + I +D+ +GE+ QVPPM+SA K
Sbjct: 78 LDKTYRAVIRLGVETDTYDVTGKVVKEQDTQMITRQDVEAVINEMQGEMLQVPPMYSAKK 137
Query: 429 VGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLI-FRVTCSKGTYIRSLCADF 487
+ G+ +Y AR+G+ +E P+++ I Q + L + L+ +T SKGTYIR+ D
Sbjct: 138 IKGQPLYKLARKGKEVEREPQKVVIHQ---AKMLSWQPPLVEVELTVSKGTYIRTYAHDL 194
Query: 488 GKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
G+ LG A L L R IG + ++++E E
Sbjct: 195 GQKLGVGAMLAELARTKIGAFCLEESFELNAFIE 228
>gi|406036519|ref|ZP_11043883.1| tRNA pseudouridine synthase B [Acinetobacter parvus DSM 16617 = CIP
108168]
Length = 297
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 87/210 (41%), Positives = 124/210 (59%), Gaps = 2/210 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+ L+NKP G +S + K+RRL +K GH G LDP+ATGLL +C+G+ATK
Sbjct: 12 VFLLNKPLGLSSNSALQKVRRLFNAQKAGHTGALDPLATGLLPICLGEATKFSHYLLDST 71
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y +LG+ T+T DA+ ++Q+ + E I + A FRG+I QVPPM+SA+K
Sbjct: 72 KRYQTTVKLGQTTTTGDAEGEILQQRETPALTAERIEQVLAQFRGDIQQVPPMYSALKRD 131
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKA 490
G +Y+ AR+G IE + R ++I++ + ED +L VTCSKGTYIR L D G+A
Sbjct: 132 GRPLYELARQGIEIERAARPVTIYELSLIDFTED--SLTLDVTCSKGTYIRVLGEDIGEA 189
Query: 491 LGSCAHLTALRRDSIGQYSADDAWEFKELE 520
LG HLT L R G + + + + LE
Sbjct: 190 LGCGGHLTKLHRTQTGHFEINPDYSIEYLE 219
>gi|363420316|ref|ZP_09308409.1| tRNA pseudouridine synthase B [Rhodococcus pyridinivorans AK37]
gi|359735900|gb|EHK84855.1| tRNA pseudouridine synthase B [Rhodococcus pyridinivorans AK37]
Length = 307
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 89/216 (41%), Positives = 129/216 (59%), Gaps = 6/216 (2%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++V+KP G TS V + RRL+ +KVGHAGTLDPMATG+L++ V +ATKL+
Sbjct: 18 LLVVDKPAGMTSHDVVARCRRLLGTRKVGHAGTLDPMATGVLVLGVERATKLLGLLALTT 77
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y+ RLG++T T DA+ + H+ DE I + A+ G+I QVP SAIK+
Sbjct: 78 KSYTATIRLGQSTVTDDAEGETVATTDATHVTDEQIGEGVAALTGDIEQVPASVSAIKID 137
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIF-----RVTCSKGTYIRSLCA 485
G++ Y + R GE++EL R +++ +FD+ + D F V CS GTYIR+L
Sbjct: 138 GKRAYARMREGEAVELKARPVTVSRFDV-LARRDVPGSGFVDVDVDVDCSSGTYIRALAR 196
Query: 486 DFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
D G ALG HLTALRR +G + + A ++L +
Sbjct: 197 DLGAALGVGGHLTALRRTKVGPFGPEHARTLEQLAD 232
>gi|420932223|ref|ZP_15395498.1| tRNA pseudouridine synthase B [Mycobacterium massiliense
1S-151-0930]
gi|420937930|ref|ZP_15401199.1| tRNA pseudouridine synthase B [Mycobacterium massiliense
1S-152-0914]
gi|420942480|ref|ZP_15405737.1| tRNA pseudouridine synthase B [Mycobacterium massiliense
1S-153-0915]
gi|420948011|ref|ZP_15411261.1| tRNA pseudouridine synthase B [Mycobacterium massiliense
1S-154-0310]
gi|420952739|ref|ZP_15415983.1| tRNA pseudouridine synthase B [Mycobacterium massiliense 2B-0626]
gi|420956909|ref|ZP_15420146.1| tRNA pseudouridine synthase B [Mycobacterium massiliense 2B-0107]
gi|420962308|ref|ZP_15425533.1| tRNA pseudouridine synthase B [Mycobacterium massiliense 2B-1231]
gi|420992865|ref|ZP_15456012.1| tRNA pseudouridine synthase B [Mycobacterium massiliense 2B-0307]
gi|420998719|ref|ZP_15461856.1| tRNA pseudouridine synthase B [Mycobacterium massiliense 2B-0912-R]
gi|421003156|ref|ZP_15466280.1| tRNA pseudouridine synthase B [Mycobacterium massiliense 2B-0912-S]
gi|392136982|gb|EIU62719.1| tRNA pseudouridine synthase B [Mycobacterium massiliense
1S-151-0930]
gi|392143445|gb|EIU69170.1| tRNA pseudouridine synthase B [Mycobacterium massiliense
1S-152-0914]
gi|392149907|gb|EIU75621.1| tRNA pseudouridine synthase B [Mycobacterium massiliense
1S-153-0915]
gi|392155041|gb|EIU80747.1| tRNA pseudouridine synthase B [Mycobacterium massiliense
1S-154-0310]
gi|392158051|gb|EIU83748.1| tRNA pseudouridine synthase B [Mycobacterium massiliense 2B-0626]
gi|392185649|gb|EIV11298.1| tRNA pseudouridine synthase B [Mycobacterium massiliense 2B-0307]
gi|392186531|gb|EIV12178.1| tRNA pseudouridine synthase B [Mycobacterium massiliense 2B-0912-R]
gi|392194614|gb|EIV20234.1| tRNA pseudouridine synthase B [Mycobacterium massiliense 2B-0912-S]
gi|392249773|gb|EIV75248.1| tRNA pseudouridine synthase B [Mycobacterium massiliense 2B-1231]
gi|392253808|gb|EIV79276.1| tRNA pseudouridine synthase B [Mycobacterium massiliense 2B-0107]
Length = 280
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 89/208 (42%), Positives = 121/208 (58%), Gaps = 3/208 (1%)
Query: 320 WTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSGVFRL 379
TS V + RR+ +KVGHAGTLDPMATG+L++ + +ATK++ K Y+ R
Sbjct: 1 MTSHDVVSRCRRIFSTRKVGHAGTLDPMATGVLVIGIERATKIMGLLTLTTKSYAATIRF 60
Query: 380 GEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEKMYDKAR 439
G++TST DA+ V+Q H+ + DI A A RG+I QVP SAIKV G++ Y AR
Sbjct: 61 GQSTSTDDAEGEVLQTISASHLTEVDIEAAVAGLRGDIAQVPSSVSAIKVDGQRAYKLAR 120
Query: 440 RGESIELSPRRISIFQFDIERSLEDRQNLI---FRVTCSKGTYIRSLCADFGKALGSCAH 496
G+S+EL+ R + I +FD+ L+ V CS GTYIR+L D G ALG H
Sbjct: 121 EGQSVELAARPVHISRFDVLGVRHPDDGLVDVDVEVDCSSGTYIRALARDAGAALGVGGH 180
Query: 497 LTALRRDSIGQYSADDAWEFKELEEAIT 524
LTALRR +G + D A + L + T
Sbjct: 181 LTALRRTRVGDFGLDRARALEALADEAT 208
>gi|307565600|ref|ZP_07628080.1| tRNA pseudouridine synthase B [Prevotella amnii CRIS 21A-A]
gi|307345759|gb|EFN91116.1| tRNA pseudouridine synthase B [Prevotella amnii CRIS 21A-A]
Length = 233
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 86/213 (40%), Positives = 127/213 (59%), Gaps = 5/213 (2%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLV-KVK----KVGHAGTLDPMATGLLIVCVGKATKLV 363
G ++ ++KP G TSF +R L KV K+GHAGTLDP+ATG+LI+ G+ TKL+
Sbjct: 6 GVIIPIDKPYGITSFKALAHIRYLCSKVNDGKVKIGHAGTLDPLATGVLILATGRKTKLI 65
Query: 364 DRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPM 423
+ Q K Y +LG T ++D + + P HI +E IR A SF GEI QVPP
Sbjct: 66 ESLQAHTKEYVATLQLGATTDSYDMEHEENESFPTAHITEELIRDALQSFVGEIQQVPPT 125
Query: 424 FSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSL 483
+SA+KV G++ Y R G+ +EL P+ + I + +++ + + RV C KGTYIR+L
Sbjct: 126 YSAVKVSGQRAYTLRRDGQQVELKPKTVQIDEIELQSFDSYKMQITIRVVCGKGTYIRAL 185
Query: 484 CADFGKALGSCAHLTALRRDSIGQYSADDAWEF 516
DFG+ + S A+L +LRR +G + DD ++
Sbjct: 186 ARDFGRFIHSGAYLRSLRRVRVGAINIDDCIDY 218
>gi|167752309|ref|ZP_02424436.1| hypothetical protein ALIPUT_00553 [Alistipes putredinis DSM 17216]
gi|167660550|gb|EDS04680.1| tRNA pseudouridine synthase B [Alistipes putredinis DSM 17216]
Length = 240
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 93/222 (41%), Positives = 130/222 (58%), Gaps = 7/222 (3%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVK-----KVGHAGTLDPMATGLLIVCVGKATKLV 363
G + +++KP WTS V K++ ++ KVGHAGTLDP+ATG+L+VC+GKATK+
Sbjct: 17 GYIAVIDKPLEWTSSDVVRKIKFALRRAGYPKIKVGHAGTLDPLATGILLVCIGKATKMA 76
Query: 364 DRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPM 423
D Q K Y LG T ++D + P+ + P+EHI E + + S GE Q PP+
Sbjct: 77 DALQAEEKEYVADLMLGATTPSFDLEHPIDRTYPFEHITREAVEEVLRSLTGERLQTPPL 136
Query: 424 FSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSL 483
+SA KV G + Y+ AR GE +EL I+I++ ++ D + RV CSKGTYIRSL
Sbjct: 137 YSAKKVEGVRAYELARAGEEVELRKALINIYEMELMEY--DLPRIRIRVRCSKGTYIRSL 194
Query: 484 CADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAITK 525
+ G+ALGS AHLT+L R G + D A E E + K
Sbjct: 195 AGEIGQALGSGAHLTSLCRTRSGGFRLDAAHELNFFLEKLQK 236
>gi|309810446|ref|ZP_07704273.1| tRNA pseudouridine synthase B [Dermacoccus sp. Ellin185]
gi|308435598|gb|EFP59403.1| tRNA pseudouridine synthase B [Dermacoccus sp. Ellin185]
Length = 319
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 99/230 (43%), Positives = 137/230 (59%), Gaps = 13/230 (5%)
Query: 301 PPTWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKAT 360
P T DG +VLV+KP GWTS V G++RRL ++VGHAGTLDPMATG+L++ V KAT
Sbjct: 16 PQTPDG----LVLVDKPAGWTSHDVVGRMRRLANTRRVGHAGTLDPMATGVLVLGVNKAT 71
Query: 361 KLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPW--EHIKDEDIRKAAASFRGEIW 418
KL+ G K Y+ RLG+ T T DA+ V P + DE + A AS G+I
Sbjct: 72 KLLTFLVGCDKEYTATIRLGQTTITDDAEGGVTASTPLTRAELSDEALAAAVASLSGDIE 131
Query: 419 QVPPMFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDI----ERSLED---RQNLIFR 471
QVP SAIKV G++ Y + R GE + L+ R +++ +F++ E S +D +L
Sbjct: 132 QVPSSVSAIKVDGKRSYARVRGGEDVALAARSVTVSRFEVLDVREASTDDGMPVVDLDVV 191
Query: 472 VTCSKGTYIRSLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
V + GTY+R+L D G ALG HLTALRR +G ++ +DA + + E
Sbjct: 192 VEVTSGTYVRALARDLGAALGVGGHLTALRRTRVGAFTLEDAATLETIAE 241
>gi|229157386|ref|ZP_04285464.1| tRNA pseudouridine synthase B [Bacillus cereus ATCC 4342]
gi|228626113|gb|EEK82862.1| tRNA pseudouridine synthase B [Bacillus cereus ATCC 4342]
Length = 307
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 87/221 (39%), Positives = 138/221 (62%), Gaps = 11/221 (4%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L++KPKG TS KLR++++ K++GH GTLDP TG+L +CVG+ATK+
Sbjct: 4 VILLHKPKGMTSHDCVFKLRKILREKRIGHTGTLDPDVTGVLPICVGRATKIAQFLTSET 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V++ + + I +++ + A+ G I Q+PPMFSA+KV
Sbjct: 64 KTYEGEVTLGFSTTTEDASGEVVETKHVDRVITRKEVEEVLAALTGTIEQMPPMFSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQ-------NLIFRVTCSKGTYIRS 482
G+K+Y+ AR G+ +E R I+I +F + L+DR+ + FRVTCSKGTY+R+
Sbjct: 124 NGKKLYEYARAGQEVERPVRTITIHEFVL---LDDREVFEGENISFRFRVTCSKGTYVRT 180
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
L G+ LG +H++ L R + G++ + F+E+EE +
Sbjct: 181 LAVMIGEKLGFPSHMSHLVRTASGEFLLEHCISFEEIEENV 221
>gi|223933475|ref|ZP_03625459.1| tRNA pseudouridine synthase B [Streptococcus suis 89/1591]
gi|330832928|ref|YP_004401753.1| tRNA pseudouridine synthase B [Streptococcus suis ST3]
gi|386584317|ref|YP_006080720.1| tRNA pseudouridine synthase B [Streptococcus suis D9]
gi|223897848|gb|EEF64225.1| tRNA pseudouridine synthase B [Streptococcus suis 89/1591]
gi|329307151|gb|AEB81567.1| tRNA pseudouridine synthase B [Streptococcus suis ST3]
gi|353736463|gb|AER17472.1| tRNA pseudouridine synthase B [Streptococcus suis D9]
Length = 292
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 87/221 (39%), Positives = 129/221 (58%), Gaps = 3/221 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ V K G TS V KLR++++ KK+GH GTLDP TG+L + VGKAT++++ Q
Sbjct: 5 IINVKKEAGMTSHDVVFKLRKILQEKKIGHGGTLDPDVTGVLPIAVGKATRMIEYMQEEG 64
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y G LG +T+T D+ +++R P I ++ + +A SF G I Q+PPM+SA+KV
Sbjct: 65 KIYEGEITLGFSTTTEDSSGDLVERTPVLDIAEQAVDEAMTSFVGTITQIPPMYSAVKVN 124
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLE---DRQNLIFRVTCSKGTYIRSLCADF 487
G K+Y+ AR GE +E R+I I+ F+ +E D FRV C KGTY+R+L D
Sbjct: 125 GRKLYEYARTGEEVERPQRQIEIYSFERTSPIELVDDCARFTFRVRCGKGTYVRTLSVDL 184
Query: 488 GKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAITKNYF 528
G LG +H++ L R DA +E+ + +N F
Sbjct: 185 GAKLGYASHMSKLERTGSAGMDLADALTLEEISSLVAENDF 225
>gi|406884308|gb|EKD31740.1| tRNA pseudouridine synthase B [uncultured bacterium]
Length = 250
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 94/221 (42%), Positives = 127/221 (57%), Gaps = 8/221 (3%)
Query: 307 PFGTMVLVNKPKGWTSFTVCGKLR-RL-----VKVKKVGHAGTLDPMATGLLIVCVGKAT 360
P G ++ V+KP WTS V K++ RL +K KVGHAGTLDP+ATG+L++CVGKAT
Sbjct: 27 PSGFVISVDKPYRWTSADVVRKIKFRLQRSFGLKNIKVGHAGTLDPLATGILLICVGKAT 86
Query: 361 KLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQV 420
K+ ++ Q K Y R G T ++D + + PWEHI E I F GEI Q+
Sbjct: 87 KVAEQLQAQPKEYIAGIRFGATTPSFDLEKEIDNHFPWEHITQELIESKLPQFIGEIDQI 146
Query: 421 PPMFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYI 480
PP+FSA + G + YD AR G + P R++I+ + D Q L V CSKGTYI
Sbjct: 147 PPVFSAKFIDGSRAYDLARAGIETIMKPSRVTIYGLQLISF--DGQELKIAVKCSKGTYI 204
Query: 481 RSLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
RS D G+A GS AHL +L R G + D+A + +E+
Sbjct: 205 RSFARDIGEACGSGAHLVSLVRTVSGSFGVDNALSMENIED 245
>gi|302023885|ref|ZP_07249096.1| tRNA pseudouridine synthase B [Streptococcus suis 05HAS68]
Length = 292
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 87/221 (39%), Positives = 129/221 (58%), Gaps = 3/221 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ V K G TS V KLR++++ KK+GH GTLDP TG+L + VGKAT++++ Q
Sbjct: 5 IINVKKEAGMTSHDVVFKLRKILQEKKIGHGGTLDPDVTGVLPIAVGKATRMIEYMQEEG 64
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y G LG +T+T D+ +++R P I ++ + +A SF G I Q+PPM+SA+KV
Sbjct: 65 KIYEGEITLGFSTTTEDSSGDLVERTPVLDIAEQAVDEAMTSFVGTITQIPPMYSAVKVN 124
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLE---DRQNLIFRVTCSKGTYIRSLCADF 487
G K+Y+ AR GE +E R+I I+ F+ +E D FRV C KGTY+R+L D
Sbjct: 125 GRKLYEYARTGEEVERPQRQIEIYSFERTSPIELVDDCARFTFRVRCGKGTYVRTLSVDL 184
Query: 488 GKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAITKNYF 528
G LG +H++ L R DA +E+ + +N F
Sbjct: 185 GAKLGYASHMSKLERTGSAGMDLADALTLEEISSLVAENDF 225
>gi|150003741|ref|YP_001298485.1| tRNA pseudouridine synthase B [Bacteroides vulgatus ATCC 8482]
gi|212692506|ref|ZP_03300634.1| hypothetical protein BACDOR_02002 [Bacteroides dorei DSM 17855]
gi|237709174|ref|ZP_04539655.1| tRNA pseudouridine synthase B [Bacteroides sp. 9_1_42FAA]
gi|294777442|ref|ZP_06742893.1| tRNA pseudouridine synthase B [Bacteroides vulgatus PC510]
gi|345514236|ref|ZP_08793749.1| tRNA pseudouridine synthase B [Bacteroides dorei 5_1_36/D4]
gi|423230594|ref|ZP_17216998.1| tRNA pseudouridine synthase B [Bacteroides dorei CL02T00C15]
gi|423244303|ref|ZP_17225378.1| tRNA pseudouridine synthase B [Bacteroides dorei CL02T12C06]
gi|423313119|ref|ZP_17291055.1| tRNA pseudouridine synthase B [Bacteroides vulgatus CL09T03C04]
gi|189030160|sp|A6KZJ9.1|TRUB_BACV8 RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|149932165|gb|ABR38863.1| tRNA pseudouridine synthase B [Bacteroides vulgatus ATCC 8482]
gi|212664981|gb|EEB25553.1| tRNA pseudouridine synthase B [Bacteroides dorei DSM 17855]
gi|229437217|gb|EEO47294.1| tRNA pseudouridine synthase B [Bacteroides dorei 5_1_36/D4]
gi|229456870|gb|EEO62591.1| tRNA pseudouridine synthase B [Bacteroides sp. 9_1_42FAA]
gi|294448510|gb|EFG17059.1| tRNA pseudouridine synthase B [Bacteroides vulgatus PC510]
gi|392630738|gb|EIY24724.1| tRNA pseudouridine synthase B [Bacteroides dorei CL02T00C15]
gi|392642484|gb|EIY36250.1| tRNA pseudouridine synthase B [Bacteroides dorei CL02T12C06]
gi|392686333|gb|EIY79639.1| tRNA pseudouridine synthase B [Bacteroides vulgatus CL09T03C04]
Length = 235
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 92/219 (42%), Positives = 129/219 (58%), Gaps = 8/219 (3%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR----RLVKVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G ++ +KP WTSF V K+R R + VKK VGHAGTLDP+ATG++I+C GKATK
Sbjct: 6 GEVLYFDKPLKWTSFAVVNKIRYHICRKLGVKKIKVGHAGTLDPLATGVMIICTGKATKR 65
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ +Q K Y +LG T ++D + + P EHI E + +A F G I Q+PP
Sbjct: 66 IEEFQYHTKEYIATLQLGATTPSFDLEKEIDATYPTEHITRELVEEALQRFIGRIEQIPP 125
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRS 482
+FSA KV G++ YD AR+GE +EL + + I + ++ + + RV CSKGTYIR+
Sbjct: 126 VFSACKVDGKRAYDLARKGEDVELKAKTLIIDEIELLEC--NLPEIKIRVVCSKGTYIRA 183
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
L D G+AL S AHLT L R +G +D + E
Sbjct: 184 LARDIGEALNSGAHLTGLIRTRVGDVRLEDCLSVESFPE 222
>gi|358445329|ref|ZP_09155939.1| tRNA pseudouridylate synthase B [Corynebacterium casei UCMA 3821]
gi|356608775|emb|CCE54184.1| tRNA pseudouridylate synthase B [Corynebacterium casei UCMA 3821]
Length = 287
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 86/214 (40%), Positives = 123/214 (57%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G TS V ++RR +KVGHAGTLDPMATG+LI+ + + TK +
Sbjct: 6 LVVVDKPAGMTSHDVVARIRREFGTRKVGHAGTLDPMATGVLILGIERGTKFLAHMVAAT 65
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y RLG +T+T D + VI + EHI DE G+I Q P SAIK+
Sbjct: 66 KAYDATIRLGASTTTDDFEGEVINQTSAEHITDEQALAEIKKLTGDIMQKPAKVSAIKID 125
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKA 490
G++ Y + R GE +++ R +++ +FD+ S + + V CS GTYIRSL D G +
Sbjct: 126 GKRAYQRVRDGEEVDIPARPVTVSRFDVNASRTEPRKFDVTVECSSGTYIRSLARDLGDS 185
Query: 491 LGSCAHLTALRRDSIGQYSADDAWEFKELEEAIT 524
LG HLTALRR ++G + DA L+ ++T
Sbjct: 186 LGVGGHLTALRRTAVGPFLLADASPIDNLQLSLT 219
>gi|260889006|ref|ZP_05900269.1| tRNA pseudouridine synthase B [Leptotrichia hofstadii F0254]
gi|260861066|gb|EEX75566.1| tRNA pseudouridine synthase B [Leptotrichia hofstadii F0254]
Length = 358
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 99/232 (42%), Positives = 140/232 (60%), Gaps = 13/232 (5%)
Query: 303 TWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKL 362
T DG ++L+NK KG +SF L++++K KKVGHAGTLDPMA GL+IV + +ATK
Sbjct: 6 TKDG----LILLNKSKGVSSFGAINHLKKVIKAKKVGHAGTLDPMAEGLMIVMINEATKF 61
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWE-HIKDEDIRKAAASFRGEIWQVP 421
D K Y LG T T+D + VI + E +I D +I KA SF+G+I QVP
Sbjct: 62 SDNLMKKDKEYYVEMELGYKTGTYDLEGTVIAKYDSEINISDSEIIKAVNSFKGKIKQVP 121
Query: 422 PMFSAIKVGGEKMYDKARRGESIELSPRRISIFQF-DI-----ERSLEDRQN--LIFRVT 473
PM+SAIK+ G+K+YD AR+G +E + R + I + +I +++ E+ QN + F V
Sbjct: 122 PMYSAIKIEGQKLYDLARKGIEVERAERDVEISEIREIKVIRPDKNSENVQNIKISFYVK 181
Query: 474 CSKGTYIRSLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAITK 525
S GTYIRSL D G+ LG A +T L R IG++ +DA ++ + I K
Sbjct: 182 VSSGTYIRSLVYDIGEKLGVFATMTRLVRTKIGRFEIEDAISLEKAKAEIDK 233
>gi|169342735|ref|ZP_02863776.1| tRNA pseudouridine synthase B [Clostridium perfringens C str.
JGS1495]
gi|169299241|gb|EDS81311.1| tRNA pseudouridine synthase B [Clostridium perfringens C str.
JGS1495]
Length = 294
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 86/215 (40%), Positives = 128/215 (59%), Gaps = 1/215 (0%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
+ K G TSF V +RR+ K+KKVGH GTLDP A+G+L VC+GKATK++D K Y
Sbjct: 7 IYKNTGMTSFDVVAMVRRVAKMKKVGHTGTLDPAASGVLPVCLGKATKIIDYIMENKKVY 66
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEK 433
+LG T T+D + V++ + HI ++I SF G I QVPPM+SA+K G +
Sbjct: 67 RVNLKLGMVTDTYDLEGEVLREKDASHITKDEILNCINSFLGTIDQVPPMYSALKQNGVR 126
Query: 434 MYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKALGS 493
+Y+ AR+G + R+++I+ + +E N+ V CSKGTYIRSLC D G+ L
Sbjct: 127 LYELARQGIEVHREARKVTIYSIE-NIKIESNDNIQMDVCCSKGTYIRSLCYDIGEKLNV 185
Query: 494 CAHLTALRRDSIGQYSADDAWEFKELEEAITKNYF 528
A +TAL R G ++ ++A ++L E + + +
Sbjct: 186 GATMTALERIQNGPFTKEEAINIEDLTEKLLEKHI 220
>gi|417923920|ref|ZP_12567375.1| tRNA pseudouridine synthase B [Streptococcus mitis SK569]
gi|342836373|gb|EGU70586.1| tRNA pseudouridine synthase B [Streptococcus mitis SK569]
Length = 292
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 89/217 (41%), Positives = 127/217 (58%), Gaps = 4/217 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ + K G TS KLR+++ KK+GH GTLDP G+L + VGKAT++V+ Q
Sbjct: 4 IINLKKEAGMTSHDAVFKLRKILGTKKIGHGGTLDPDVVGVLPIAVGKATRMVEFMQDEG 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREP-WEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V+ P H+ ++ + KA AS G I Q+PPM+SA+KV
Sbjct: 64 KVYEGEITLGYSTTTEDASGEVVAETPVLSHLDEKLVDKAIASLTGPIIQIPPMYSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNL---IFRVTCSKGTYIRSLCAD 486
G K+Y+ AR G +E R+++I+QF+ + NL FRV CSKGTYIR+L D
Sbjct: 124 NGRKLYEYARAGREVERPERQVTIYQFERTSPISYEGNLARFTFRVKCSKGTYIRTLSVD 183
Query: 487 FGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
G+ LG AH++ L R S D A +E+ E +
Sbjct: 184 LGEKLGYAAHMSQLTRTSAAGLQLDAALTLEEIAEKV 220
>gi|254776117|ref|ZP_05217633.1| tRNA pseudouridine synthase B [Mycobacterium avium subsp. avium
ATCC 25291]
Length = 284
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 86/204 (42%), Positives = 123/204 (60%), Gaps = 2/204 (0%)
Query: 320 WTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSGVFRL 379
TS V G+ RR+ ++VGHAGTLDPMATG+L++ V +ATK++ K YS RL
Sbjct: 1 MTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVLGVERATKILGLLTAAAKSYSATIRL 60
Query: 380 GEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEKMYDKAR 439
G+ATST DA+ V++ H+ + I A RG+I QVP SAIKV G++ Y R
Sbjct: 61 GQATSTDDAEGDVVRSVDARHLTSQAIEAAVGGLRGDIHQVPSTVSAIKVAGKRAYKLVR 120
Query: 440 RGESIELSPRRISIFQFDIE--RSLEDRQNLIFRVTCSKGTYIRSLCADFGKALGSCAHL 497
G+++EL R + I +F++ R+ + ++ V CS GTY+R+L D G ALG HL
Sbjct: 121 EGQAVELPARPVRIDRFEVRDVRAAGECVDVDVEVDCSSGTYVRALARDLGAALGVGGHL 180
Query: 498 TALRRDSIGQYSADDAWEFKELEE 521
TALRR +G++ + A+ EL E
Sbjct: 181 TALRRTRVGRFGLEQAYGLDELAE 204
>gi|265752701|ref|ZP_06088270.1| tRNA pseudouridine synthase B [Bacteroides sp. 3_1_33FAA]
gi|263235887|gb|EEZ21382.1| tRNA pseudouridine synthase B [Bacteroides sp. 3_1_33FAA]
Length = 235
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 95/230 (41%), Positives = 133/230 (57%), Gaps = 17/230 (7%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR----RLVKVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G ++ +KP WTSF V K+R R + VKK VGHAGTLDP+ATG++I+C GKATK
Sbjct: 6 GEVLYFDKPLKWTSFAVVNKIRYHICRKLGVKKIKVGHAGTLDPLATGVMIICTGKATKR 65
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ +Q K Y +LG T ++D + + P EHI E + +A F G I Q+PP
Sbjct: 66 IEEFQYHTKEYIATLQLGATTPSFDLEKEIDATYPTEHITRELVEEALQRFIGRIEQIPP 125
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRS 482
+FSA KV G++ YD AR+GE +EL + + I + ++ + + RV CSKGTYIR+
Sbjct: 126 VFSACKVDGKRAYDLARKGEDVELKAKTLIIDEIELLEC--NLPEIKIRVVCSKGTYIRA 183
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDAWEF---------KELEEAI 523
L D G+AL S AHLT L R +G +D +E+EE I
Sbjct: 184 LARDIGEALNSGAHLTGLIRTRVGDVRLEDCLSVESFPKWLDQQEIEEVI 233
>gi|374290404|ref|YP_005037457.1| tRNA-pseudouridine synthase I [Blattabacterium sp. (Cryptocercus
punctulatus) str. Cpu]
gi|358377196|gb|AEU09384.1| tRNA-pseudouridine synthase I [Blattabacterium sp. (Cryptocercus
punctulatus) str. Cpu]
Length = 222
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 89/210 (42%), Positives = 134/210 (63%), Gaps = 7/210 (3%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLV----KVKKVGHAGTLDPMATGLLIVCVGKATKLVD 364
G ++L++KP GWTSF V ++++ + K K+GHAGTLDP+ATGLLI+ GK TK VD
Sbjct: 11 GKLLLIDKPWGWTSFEVVKRIKQKIICFSKRIKIGHAGTLDPLATGLLIILTGKYTKKVD 70
Query: 365 RYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMF 424
Q K Y+G+ ++G T ++D+++ HI E I+K + F GEI Q PP F
Sbjct: 71 SIQNYKKTYTGIIKMGCVTPSFDSETKEYNFSSTSHITPELIQKISKKFIGEINQYPPCF 130
Query: 425 SAIKVGGEKMYDKARRGESIE-LSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSL 483
SA+K+ G++ Y+ AR+G+ I+ + PRR+ I+QF I + + F + C KGTYIRS+
Sbjct: 131 SALKIEGKRFYEYARKGKKIKNMKPRRVRIYQFHILKI--GIPYIKFLIECGKGTYIRSI 188
Query: 484 CADFGKALGSCAHLTALRRDSIGQYSADDA 513
DFG + S A+L +LRR+ IG +S ++
Sbjct: 189 AQDFGIKIKSGAYLLSLRRERIGPFSIKNS 218
>gi|357392202|ref|YP_004907043.1| putative tRNA pseudouridine synthase B [Kitasatospora setae
KM-6054]
gi|311898679|dbj|BAJ31087.1| putative tRNA pseudouridine synthase B [Kitasatospora setae
KM-6054]
Length = 301
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 95/223 (42%), Positives = 126/223 (56%), Gaps = 8/223 (3%)
Query: 306 GPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDR 365
GP G +V+V+KP+G TS V KLR L +KVGHAGTLDPMATG+L++ V +AT+L+
Sbjct: 7 GPDG-LVIVDKPEGITSHGVVAKLRWLAGTRKVGHAGTLDPMATGVLVIGVERATRLLGH 65
Query: 366 YQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFS 425
K Y RLG+ T T D + V P + + E + A GEI QVP S
Sbjct: 66 LMLTAKTYEATIRLGQTTVTDDREGEVTASVPADGVTPEAVDAQVAELTGEIMQVPSKVS 125
Query: 426 AIKVGGEKMYDKARRGESIELSPRRISIFQFDIER----SLEDRQ---NLIFRVTCSKGT 478
AIK+ G++ Y + R GE EL+ R ++ F + ED +L V CS GT
Sbjct: 126 AIKIDGKRSYARVREGEEFELAARPTTVHAFTVHERRAAVAEDGTPVLDLDVTVECSSGT 185
Query: 479 YIRSLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
YIR+L D G ALG HLTALRR +G Y+ + A ++LEE
Sbjct: 186 YIRALARDLGAALGVGGHLTALRRTRVGPYAVESAHTLEQLEE 228
>gi|422882068|ref|ZP_16928524.1| tRNA pseudouridine synthase B [Streptococcus sanguinis SK355]
gi|332361832|gb|EGJ39635.1| tRNA pseudouridine synthase B [Streptococcus sanguinis SK355]
Length = 292
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 95/224 (42%), Positives = 131/224 (58%), Gaps = 8/224 (3%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ + K G TS KLR+++K KK+GH GTLDP G+L + VGKAT+LV+ Q
Sbjct: 4 IINLRKEAGMTSHDAVFKLRKILKTKKIGHGGTLDPDVVGVLPIAVGKATRLVEFMQEEG 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDED-IRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA +++R P + +E I +A S GEI Q+PPM+SA+KV
Sbjct: 64 KVYEGEITLGYSTTTEDASGDILERTPVTELLEEALIDEAMESMTGEIRQIPPMYSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIER----SLEDRQ-NLIFRVTCSKGTYIRSLC 484
G K+Y+ AR G+ +E R++ I+ F ER S ED Q FRV CSKGTY+R+L
Sbjct: 124 NGRKLYEYARAGQEVERPERQVFIYSF--ERTSPISYEDEQARFRFRVKCSKGTYVRTLS 181
Query: 485 ADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAITKNYF 528
D G LG +H++ L R S S DDA E+ E + F
Sbjct: 182 VDLGAKLGFASHMSQLTRTSSAGMSLDDALTLDEIAERVATEDF 225
>gi|322516811|ref|ZP_08069713.1| tRNA pseudouridine synthase B [Streptococcus vestibularis ATCC
49124]
gi|322124648|gb|EFX96112.1| tRNA pseudouridine synthase B [Streptococcus vestibularis ATCC
49124]
Length = 293
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 85/216 (39%), Positives = 128/216 (59%), Gaps = 3/216 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ + K G TS KLR+++ KK+GH GTLDP TG+L + VGKAT++++
Sbjct: 5 IINLKKEAGMTSHDAVFKLRKILHEKKIGHGGTLDPDVTGVLPIAVGKATRVIEYMTEAG 64
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y G +G +T+T DA V+Q P + + + +A ASF EI Q+PPM+SA+KV
Sbjct: 65 KVYEGEITIGFSTTTEDASGDVVQTTPITELDEVTVDQAMASFEREITQIPPMYSAVKVN 124
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQN---LIFRVTCSKGTYIRSLCADF 487
G+K+Y+ AR GE +E R+++I +F +E N FRV CSKGTY+R+L D
Sbjct: 125 GKKLYEYARAGEEVERPQRQVTITEFVRTSPIELENNTAKFTFRVACSKGTYVRTLSVDL 184
Query: 488 GKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
G LG +H++ALRR + + D A ++ E +
Sbjct: 185 GAKLGYASHMSALRRTASAGLTLDKALTLSQISEMV 220
>gi|377559158|ref|ZP_09788718.1| tRNA pseudouridine synthase B [Gordonia otitidis NBRC 100426]
gi|377523616|dbj|GAB33883.1| tRNA pseudouridine synthase B [Gordonia otitidis NBRC 100426]
Length = 299
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 93/213 (43%), Positives = 126/213 (59%), Gaps = 2/213 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+K +G TS V + R+L ++VGHAGTLDPMATG+L+V V +ATKL+
Sbjct: 11 LVIVDKNEGITSHDVVSRCRKLFDTRRVGHAGTLDPMATGVLVVGVERATKLLGLLSLNT 70
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y+ RLG AT T D VI + I DE I A+ G+I QVP SAIKV
Sbjct: 71 KSYTATIRLGAATDTDDRMGEVISQSDASSITDEQIADTIATLTGDIEQVPAKVSAIKVD 130
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDI--ERSLEDRQNLIFRVTCSKGTYIRSLCADFG 488
G + + AR GE EL+ R +++ +FD+ R +L V CS GTYIRSL D G
Sbjct: 131 GRRAHALARTGEEFELAARPVTVSRFDVLARRDEGTFVDLDVVVDCSAGTYIRSLARDLG 190
Query: 489 KALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
ALG+ HLTALRR ++G ++ + A ++L E
Sbjct: 191 DALGTGGHLTALRRTAVGPFTLEHARTLEQLAE 223
>gi|304382489|ref|ZP_07364984.1| tRNA pseudouridine synthase B [Prevotella marshii DSM 16973]
gi|304336320|gb|EFM02561.1| tRNA pseudouridine synthase B [Prevotella marshii DSM 16973]
Length = 233
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 90/219 (41%), Positives = 131/219 (59%), Gaps = 6/219 (2%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLV----KVKKV--GHAGTLDPMATGLLIVCVGKATKL 362
G ++ ++KP G TSF ++R L+ +VK+V GHAGTLDP+ATG+LI+C GKATK
Sbjct: 6 GEIICIDKPYGMTSFGALARVRYLISKRLRVKRVKTGHAGTLDPLATGVLILCTGKATKR 65
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ Q K Y+ +LG T ++D + V P HI + I + F+G+I Q PP
Sbjct: 66 IEALQLHTKEYTATLQLGATTPSYDMEHAVDATFPTAHITRQLIEETLKQFQGDITQKPP 125
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRS 482
+SA KVGG++ Y R G+ +ELSP++I I + ++ D L RV C KGTYIR+
Sbjct: 126 TYSACKVGGDRAYALRRAGKDVELSPKQIRIDKIELTDFDPDTMLLSIRVVCGKGTYIRA 185
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
L D GKALGS A+LT+L R +G +D ++ +
Sbjct: 186 LARDIGKALGSGAYLTSLCRTRVGDVKQEDCIRLDDVPQ 224
>gi|443323976|ref|ZP_21052939.1| tRNA pseudouridine 55 synthase [Xenococcus sp. PCC 7305]
gi|442796240|gb|ELS05547.1| tRNA pseudouridine 55 synthase [Xenococcus sp. PCC 7305]
Length = 336
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 89/214 (41%), Positives = 133/214 (62%), Gaps = 2/214 (0%)
Query: 316 KPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSG 375
KP G+TS K+RRL+ +KKVGH GTLDP+ATG+L + VGKAT+L+ ++ K Y
Sbjct: 42 KPTGFTSHDCVSKIRRLIDMKKVGHGGTLDPLATGVLPIAVGKATRLL-QFLPETKVYRA 100
Query: 376 VFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEKMY 435
V RLG +TST D + +I + HI+ E I +F+G+I Q+PPM+SAIK GG+K+Y
Sbjct: 101 VIRLGMSTSTDDLEGEIINTKSALHIRQEKIVPYLDNFQGQIEQIPPMYSAIKKGGKKLY 160
Query: 436 DKARRGESIELSPRRISIFQFDIERSLE-DRQNLIFRVTCSKGTYIRSLCADFGKALGSC 494
+ AR+GES+E+ PR ++I+Q I L + + ++CS GTYIR++ D G LG
Sbjct: 161 ELARKGESVEVPPRIVTIYQIKILNFLPGEYPEVEVEISCSPGTYIRAIARDLGTMLGVG 220
Query: 495 AHLTALRRDSIGQYSADDAWEFKELEEAITKNYF 528
L L R +++ +F +++ I +N F
Sbjct: 221 GTLANLIRIESCGMRLENSIDFDRIDQQIQQNSF 254
>gi|417556481|ref|ZP_12207540.1| tRNA pseudouridine synthase B [Gardnerella vaginalis 315-A]
gi|333602976|gb|EGL14401.1| tRNA pseudouridine synthase B [Gardnerella vaginalis 315-A]
Length = 400
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 96/222 (43%), Positives = 128/222 (57%), Gaps = 23/222 (10%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++LV+KPKG TS V R L+ K+VGHAGTLDPMATGLLI+ G AT+L++ G
Sbjct: 11 ILLVDKPKGVTSHDVVSCARGLLHTKRVGHAGTLDPMATGLLILGFGNATRLLNYLLGHD 70
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHI------KDEDIRK----AAASFRGEIWQV 420
K Y V RLGE+T+T DAD V+ E+ DE +++ A +F G I Q
Sbjct: 71 KTYEAVIRLGESTNTDDADGDVVSSVDDENSILNSANTDEILKELRCVIAKNFTGHIMQT 130
Query: 421 PPMFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIF---------- 470
P FSAIK+ G + YD AR G+ + L PR + I F + L+ R N+
Sbjct: 131 PTAFSAIKINGVRAYDLAREGKDVHLEPREVVIHDFSL---LDARFNVGVSGAKVVDVRA 187
Query: 471 RVTCSKGTYIRSLCADFGKALGSCAHLTALRRDSIGQYSADD 512
V+CS GTYIR+L D G+ LG HL +LRR IG++S +D
Sbjct: 188 SVSCSSGTYIRALARDLGRVLGVGGHLVSLRRTRIGEFSVED 229
>gi|385802119|ref|YP_005838522.1| tRNA pseudouridine synthase B [Gardnerella vaginalis HMP9231]
gi|333393211|gb|AEF31129.1| tRNA pseudouridine synthase B [Gardnerella vaginalis HMP9231]
Length = 400
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 96/222 (43%), Positives = 128/222 (57%), Gaps = 23/222 (10%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++LV+KPKG TS V R L+ K+VGHAGTLDPMATGLLI+ G AT+L++ G
Sbjct: 11 ILLVDKPKGVTSHDVVSCARGLLHTKRVGHAGTLDPMATGLLILGFGNATRLLNYLLGHD 70
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHI------KDEDIRK----AAASFRGEIWQV 420
K Y V RLGE+T+T DAD V+ E+ DE +++ A +F G I Q
Sbjct: 71 KTYEAVIRLGESTNTDDADGDVVSSVDDENSILNSANTDEILKELRCVIAKNFTGHIMQT 130
Query: 421 PPMFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIF---------- 470
P FSAIK+ G + YD AR G+ + L PR + I F + L+ R N+
Sbjct: 131 PTAFSAIKINGVRAYDLAREGKDVHLEPREVVIHDFSL---LDARFNVGVSGAKVVDVRA 187
Query: 471 RVTCSKGTYIRSLCADFGKALGSCAHLTALRRDSIGQYSADD 512
V+CS GTYIR+L D G+ LG HL +LRR IG++S +D
Sbjct: 188 SVSCSSGTYIRALARDLGRVLGVGGHLVSLRRTRIGEFSVED 229
>gi|189460199|ref|ZP_03008984.1| hypothetical protein BACCOP_00836 [Bacteroides coprocola DSM 17136]
gi|189433060|gb|EDV02045.1| tRNA pseudouridine synthase B [Bacteroides coprocola DSM 17136]
Length = 234
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 89/218 (40%), Positives = 129/218 (59%), Gaps = 8/218 (3%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR----RLVKVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G ++ +KP WTSF + K+R R + VKK VGHAGTLDP+ATG++I+C GKATK
Sbjct: 6 GEVLYFDKPLRWTSFALVNKVRYHISRKLGVKKIKVGHAGTLDPLATGVMIICTGKATKR 65
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ +Q K Y +LG T ++D + + P EHI + + +F G I Q+PP
Sbjct: 66 IEEFQYHTKEYIATLQLGATTPSYDLEKEIDATYPTEHITRQLVEDTLKNFMGTIEQIPP 125
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRS 482
FSA KV G++ YD AR+G+ +EL P+ + I + ++ + + RV CSKGTYIR+
Sbjct: 126 AFSACKVDGKRAYDLARKGDEVELKPKTLVIDEIELLEC--NLPEIKIRVVCSKGTYIRA 183
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELE 520
L D G+AL S AHLT L R +G +D + + E
Sbjct: 184 LARDIGEALNSGAHLTGLIRTRVGDVRLEDCMQVDDFE 221
>gi|422871134|ref|ZP_16917627.1| tRNA pseudouridine synthase B [Streptococcus sanguinis SK1087]
gi|328946090|gb|EGG40236.1| tRNA pseudouridine synthase B [Streptococcus sanguinis SK1087]
Length = 292
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 93/222 (41%), Positives = 131/222 (59%), Gaps = 4/222 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ + K G TS KLR+++K KK+GH GTLDP G+L + VGKAT+LV+ Q
Sbjct: 4 IINLKKEAGMTSHDAVFKLRKILKTKKIGHGGTLDPDVVGVLPIAVGKATRLVEFMQEEG 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDED-IRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA +++R P + +E I +A S GEI Q+PPM+SA+KV
Sbjct: 64 KTYEGEITLGCSTTTEDASGDLLERTPVTELLEEALIDEAMESMTGEIRQIPPMYSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIERSL--EDRQ-NLIFRVTCSKGTYIRSLCAD 486
G K+Y+ AR G+ +E R ++I+ FD + ED Q FRV CSKGTY+R+L D
Sbjct: 124 NGRKLYEYARAGQEVERPERLVTIYSFDRISPIAYEDEQARFRFRVKCSKGTYVRTLSVD 183
Query: 487 FGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAITKNYF 528
G LG +H++ L R S S DDA E+ E + + F
Sbjct: 184 LGAKLGFASHMSQLTRTSSAGMSLDDALTLDEIAERVAVDDF 225
>gi|56478757|ref|YP_160346.1| tRNA pseudouridine synthase B [Aromatoleum aromaticum EbN1]
gi|62901199|sp|Q5NZR9.1|TRUB_AROAE RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|56314800|emb|CAI09445.1| tRNA pseudouridine 55 synthase [Aromatoleum aromaticum EbN1]
Length = 308
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 91/210 (43%), Positives = 123/210 (58%), Gaps = 3/210 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L++KP+G TS RRL+ K GH GTLDPMATGLL + +G+ATK
Sbjct: 17 VLLLDKPRGLTSNAALQTARRLLNAAKAGHTGTLDPMATGLLPLTLGEATKFSQMLLDAD 76
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y RLG T T DA+ I P H+ D+ IR+A A+ GEI QVPPM+SA+K
Sbjct: 77 KAYEATVRLGIETDTGDAEGAAIATAPV-HVTDDSIRQALAALTGEIEQVPPMYSALKRD 135
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKA 490
G+ +Y+ AR G +E + R ++I ++ D +L RV CSKGTY+R+L D G+
Sbjct: 136 GKPLYEYARAGIEVERAARPVTIHSLELLGVEGD--SLRIRVDCSKGTYVRTLAIDLGRL 193
Query: 491 LGSCAHLTALRRDSIGQYSADDAWEFKELE 520
LG HLT LRR IG ++ D+A LE
Sbjct: 194 LGCGGHLTELRRTRIGPFNVDEAVTLTALE 223
>gi|256396840|ref|YP_003118404.1| tRNA pseudouridine synthase B [Catenulispora acidiphila DSM 44928]
gi|256363066|gb|ACU76563.1| tRNA pseudouridine synthase B [Catenulispora acidiphila DSM 44928]
Length = 305
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 99/224 (44%), Positives = 133/224 (59%), Gaps = 9/224 (4%)
Query: 305 DGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVD 364
DGP G +V+V+KP GWTS V G++RRL + ++VGHAGTLDPMATG+L+V V K T+L+
Sbjct: 9 DGP-GGLVIVDKPAGWTSHDVVGRVRRLARTRRVGHAGTLDPMATGVLVVGVEKTTRLLG 67
Query: 365 RYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMF 424
K Y RLG++T T DA+ R ++ D+ +R A SF G I Q P
Sbjct: 68 HLALTRKTYETTIRLGQSTITDDAEGETTDRADASNVSDDMVRGAIPSFVGAITQRPSAV 127
Query: 425 SAIKVGGEKMYDKARRGESIELSPRRISIFQFDI-----ERSLEDRQNLIFRVTCSKGTY 479
SAIKV G + Y + R GE++EL+ R ++I +FD+ E +L D + V CS GTY
Sbjct: 128 SAIKVDGVRSYKRVREGEAVELAARPVTIHRFDVLAVRREGALLDVDAI---VECSSGTY 184
Query: 480 IRSLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
IR+L D G LG HLT LRR ++G Y A EL E +
Sbjct: 185 IRALARDLGATLGVGGHLTMLRRTAVGPYGLALAHPLAELTELV 228
>gi|442319345|ref|YP_007359366.1| tRNA pseudouridine synthase B [Myxococcus stipitatus DSM 14675]
gi|441486987|gb|AGC43682.1| tRNA pseudouridine synthase B [Myxococcus stipitatus DSM 14675]
Length = 290
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 91/215 (42%), Positives = 130/215 (60%), Gaps = 9/215 (4%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++++KP G TSF V ++R L+K+KKVGH GTLDPMATG+L +C+G+ATK+
Sbjct: 4 VLVIDKPTGPTSFDVVRQVRSLLKLKKVGHTGTLDPMATGVLPLCLGEATKVAGFITEGD 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y RLG T T DA+ V P + + A A FRG QVPPM+SA+KV
Sbjct: 64 KAYDATVRLGSETDTQDAEGQVTATAPVPALTPALLEAALARFRGSFDQVPPMYSAVKVA 123
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKA 490
G+++Y+ AR GE +E + R +++++ + DR +L R CSKG ++R+L D G+A
Sbjct: 124 GKRLYELARAGEEVERAARHVTVYELVLRDFSADRIHLSVR--CSKGFFVRTLAFDLGRA 181
Query: 491 LGSCAHLTALRRDSIGQYS-------ADDAWEFKE 518
LG AHL ALRR + G + AD A + KE
Sbjct: 182 LGCGAHLEALRRTASGPFVLARALPLADVAAQAKE 216
>gi|359428707|ref|ZP_09219737.1| tRNA pseudouridine synthase B [Acinetobacter sp. NBRC 100985]
gi|358235893|dbj|GAB01276.1| tRNA pseudouridine synthase B [Acinetobacter sp. NBRC 100985]
Length = 297
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 88/210 (41%), Positives = 120/210 (57%), Gaps = 2/210 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+ L+NKP G +S + K+RRL +K GH G LDP+ATGLL +C+G+ATK
Sbjct: 12 VFLLNKPLGLSSNSALQKVRRLFNAQKAGHTGALDPLATGLLPICLGEATKFSHYLLDST 71
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y +LG+ TST D + V+Q + E I FRG+I QVPPM+SA+K
Sbjct: 72 KRYQTTVKLGQTTSTGDVEGVVLQERVVSALNQEKIEAVLEQFRGDIQQVPPMYSALKRD 131
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKA 490
G +Y+ AR+G IE R ++I++ + ED +L VTCSKGTYIR L D G+A
Sbjct: 132 GRPLYELARKGIEIEREARPVTIYELKLIEFSED--SLTLDVTCSKGTYIRVLGEDIGEA 189
Query: 491 LGSCAHLTALRRDSIGQYSADDAWEFKELE 520
LG HLT L R G + D ++ + LE
Sbjct: 190 LGCGGHLTKLHRTQTGHFEIDPSYTIEYLE 219
>gi|422846442|ref|ZP_16893125.1| tRNA pseudouridine synthase B [Streptococcus sanguinis SK72]
gi|325687885|gb|EGD29905.1| tRNA pseudouridine synthase B [Streptococcus sanguinis SK72]
Length = 292
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 93/222 (41%), Positives = 131/222 (59%), Gaps = 4/222 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ + K G TS KLR+++K KK+GH GTLDP G+L + VGKAT+LV+ Q
Sbjct: 4 IINLKKEAGMTSHDAVFKLRKILKTKKIGHGGTLDPDVVGVLPIAVGKATRLVEFMQEEG 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDED-IRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA +++R P + +E I +A S GEI Q+PPM+SA+KV
Sbjct: 64 KTYEGEITLGCSTTTEDASGDLLERTPVTELLEEALIDEAMESMTGEIRQIPPMYSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIERSL--EDRQ-NLIFRVTCSKGTYIRSLCAD 486
G K+Y+ AR G+ +E R ++I+ FD + ED Q FRV CSKGTY+R+L D
Sbjct: 124 NGRKLYEYARAGQEVERPERLVTIYSFDRISPIAYEDEQARFRFRVKCSKGTYVRTLSVD 183
Query: 487 FGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAITKNYF 528
G LG +H++ L R S S DDA E+ E + + F
Sbjct: 184 LGAKLGFASHMSQLTRTSSAGMSLDDALTLDEIAERVAVDDF 225
>gi|183981930|ref|YP_001850221.1| tRNA pseudouridine synthase B [Mycobacterium marinum M]
gi|183175256|gb|ACC40366.1| tRNA pseudouridine synthase B TruB [Mycobacterium marinum M]
Length = 301
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 92/220 (41%), Positives = 127/220 (57%), Gaps = 4/220 (1%)
Query: 306 GP-FG-TMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLV 363
GP FG +V+V+KP TS V G+ RR+ ++VGHAGTLDPMATG+L++ + +ATK++
Sbjct: 7 GPGFGPGIVVVDKPGAMTSHDVVGRCRRIFGTRRVGHAGTLDPMATGVLVIGIERATKIL 66
Query: 364 DRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPM 423
K Y+ RLG+ TST DA+ + EH+ E I A G+I QVP
Sbjct: 67 GLLTATSKSYAATIRLGQTTSTEDAEGEPLASVSAEHVAPEAIAAAILDLTGDIRQVPSA 126
Query: 424 FSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIE--RSLEDRQNLIFRVTCSKGTYIR 481
SAIKV G + Y AR G+++EL+ R + I +F++ R D ++ V CS GTYIR
Sbjct: 127 VSAIKVDGRRAYQLAREGQTVELAARPVRIDRFELMDLRRGADVIDIDVEVDCSSGTYIR 186
Query: 482 SLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
+L D G AL HLT+LRR +G + A EL E
Sbjct: 187 ALARDLGAALDVGGHLTSLRRTRVGHFDLSQAASLDELAE 226
>gi|92115187|ref|YP_575115.1| tRNA pseudouridine synthase B [Chromohalobacter salexigens DSM
3043]
gi|122419136|sp|Q1QSZ2.1|TRUB_CHRSD RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|91798277|gb|ABE60416.1| tRNA pseudouridine synthase B [Chromohalobacter salexigens DSM
3043]
Length = 307
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 91/215 (42%), Positives = 124/215 (57%), Gaps = 2/215 (0%)
Query: 307 PFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRY 366
P ++L++K G +S ++RRL +K GH GTLDPMATGLL VC G+ATK
Sbjct: 9 PIDGVLLLDKAPGVSSNRALQQVRRLYDAQKAGHTGTLDPMATGLLPVCFGEATKFSAYL 68
Query: 367 QGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSA 426
K Y RLGE T T DA+ VI+ + + DI A A FRGE+ QVPPM+SA
Sbjct: 69 LDADKTYRTWVRLGEVTDTGDAEGTVIEHHSVPALDERDIEAALAGFRGEVEQVPPMYSA 128
Query: 427 IKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCAD 486
+K G +Y+ AR G+ +E + RR++++ + + + V CSKGTYIR+L D
Sbjct: 129 LKHQGRPLYELAREGKHVERAARRVTVYDMRLLSC--EAEGFELEVRCSKGTYIRTLAED 186
Query: 487 FGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
G ALG AH+T+LRR G + AD F LE+
Sbjct: 187 IGHALGCGAHITSLRRLRSGPFEADAMHAFSALED 221
>gi|283780580|ref|YP_003371335.1| tRNA pseudouridine synthase B [Pirellula staleyi DSM 6068]
gi|283439033|gb|ADB17475.1| tRNA pseudouridine synthase B [Pirellula staleyi DSM 6068]
Length = 301
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 92/219 (42%), Positives = 132/219 (60%), Gaps = 3/219 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++VNKP G TS V +++R VK KVGHAGTLDP+ATG+L++ +G T+LV+ Q M
Sbjct: 4 ILIVNKPAGPTSRDVVNRVQRCVKPAKVGHAGTLDPLATGVLVIGIGAGTRLVEYVQQMP 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y G FRLG ++ T D I + + +D+R+ F G+I Q PP +SA+KV
Sbjct: 64 KTYVGQFRLGISSDTEDITGCCITHDESPVVSRDDLRRVLPRFLGKISQKPPAYSALKVE 123
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKA 490
GE+ YD ARRGE++EL+PR I I + ++ R D + + C GTY+RSL D A
Sbjct: 124 GERAYDLARRGETVELAPREIVIRRLELTRF--DYPDFELVIDCESGTYVRSLGRDIASA 181
Query: 491 LGSCAHLTALRRDSIGQYSADDAWEFKELE-EAITKNYF 528
L + A +T L R SIG +S + A + E IT++
Sbjct: 182 LETHAVMTDLIRTSIGSFSLERAITMDSISRETITEHLL 220
>gi|93004907|ref|YP_579344.1| tRNA pseudouridine synthase B [Psychrobacter cryohalolentis K5]
gi|122416153|sp|Q1QEP3.1|TRUB_PSYCK RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|92392585|gb|ABE73860.1| tRNA pseudouridine synthase B [Psychrobacter cryohalolentis K5]
Length = 359
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 92/215 (42%), Positives = 119/215 (55%), Gaps = 7/215 (3%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKV-----KKVGHAGTLDPMATGLLIVCVGKATKLVDR 365
++LV+KP+G TS V K++ L K KK GH GTLDPMATGLL +C+G+ATK
Sbjct: 24 VILVDKPQGMTSQQVVSKVKYLFKSPNHDSKKAGHTGTLDPMATGLLPICLGEATKFSHY 83
Query: 366 YQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFS 425
K Y LG T T DAD V P D + K A F G Q+PPM+S
Sbjct: 84 QLDADKSYQATILLGSQTDTGDADGQVTAEAPIPAFDDALLDKVAQQFLGAQQQIPPMYS 143
Query: 426 AIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCA 485
A+K G+K+Y+ AR G ++ PR I + IE D Q + VTCSKGTY+R L
Sbjct: 144 ALKKDGKKLYEYARAGIEVDRPPRDIVLKA--IELKAIDEQQIQLTVTCSKGTYVRVLAE 201
Query: 486 DFGKALGSCAHLTALRRDSIGQYSADDAWEFKELE 520
D KA+G+ HLTALRR +G + D+ +LE
Sbjct: 202 DIAKAMGTLGHLTALRRLQVGDFKIDETIALADLE 236
>gi|418472215|ref|ZP_13041976.1| tRNA pseudouridine synthase B [Streptomyces coelicoflavus ZG0656]
gi|371547173|gb|EHN75572.1| tRNA pseudouridine synthase B [Streptomyces coelicoflavus ZG0656]
Length = 301
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 90/221 (40%), Positives = 126/221 (57%), Gaps = 7/221 (3%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G+TS V K+R + + ++VGHAGTLDPMATG+L++ V +ATKL+
Sbjct: 11 LVIVDKPSGFTSHDVVAKMRGIARTRRVGHAGTLDPMATGVLVLGVERATKLLGHLALTE 70
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y G RLG+ T T DA+ + + E I A G I QVP SAIK+
Sbjct: 71 KEYLGTIRLGQTTLTDDAEGEITGSRDASKVTREAIDAGVAELSGAIMQVPSKVSAIKIK 130
Query: 431 GEKMYDKARRGESIELSPRRISIFQF---DIERSLEDRQ----NLIFRVTCSKGTYIRSL 483
G + Y +AR GE E+ R +++ F D+ ++ D +L+ VTCS GTYIR+L
Sbjct: 131 GVRSYKRAREGEEFEIPARPVTVSSFAVYDVRDAVADDGTPVLDLVVSVTCSSGTYIRAL 190
Query: 484 CADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAIT 524
D G LG HLTALRR +G Y D A +L++ +T
Sbjct: 191 ARDLGAGLGVGGHLTALRRTRVGPYKLDGARTLDQLQQDLT 231
>gi|319640037|ref|ZP_07994764.1| tRNA pseudouridine synthase B [Bacteroides sp. 3_1_40A]
gi|345517051|ref|ZP_08796529.1| tRNA pseudouridine synthase B [Bacteroides sp. 4_3_47FAA]
gi|254833823|gb|EET14132.1| tRNA pseudouridine synthase B [Bacteroides sp. 4_3_47FAA]
gi|317388315|gb|EFV69167.1| tRNA pseudouridine synthase B [Bacteroides sp. 3_1_40A]
Length = 235
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 92/219 (42%), Positives = 129/219 (58%), Gaps = 8/219 (3%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR----RLVKVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G ++ +KP WTSF V K+R R + VKK VGHAGTLDP+ATG++I+C GKATK
Sbjct: 6 GEVLYFDKPLKWTSFAVVNKIRYHICRKLGVKKIKVGHAGTLDPLATGVMIICTGKATKR 65
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ +Q K Y +LG T ++D + + P EHI E + +A F G I Q+PP
Sbjct: 66 IEEFQYHTKEYIATLQLGATTPSFDLEKEIDATYPTEHITRELVEEALQRFIGRIEQIPP 125
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRS 482
+FSA KV G++ YD AR+GE +EL + + I + ++ + + RV CSKGTYIR+
Sbjct: 126 VFSACKVDGKRAYDLARKGEDVELKAKTLIIDEIELLEC--NLPEIKIRVVCSKGTYIRA 183
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
L D G+AL S AHLT L R +G +D + E
Sbjct: 184 LARDIGEALNSGAHLTGLIRIRVGDVRLEDCLSVESFPE 222
>gi|455651679|gb|EMF30393.1| tRNA pseudouridine synthase B [Streptomyces gancidicus BKS 13-15]
Length = 302
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 89/218 (40%), Positives = 124/218 (56%), Gaps = 7/218 (3%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G+TS V K+R + + ++VGHAGTLDPMATG+L++ V +ATKL+
Sbjct: 11 LVIVDKPSGFTSHDVVAKMRGIARTRRVGHAGTLDPMATGVLVLGVERATKLLGHLALTE 70
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y G RLG+ T T DA+ + + E + A+ G+I QVP SAIK+
Sbjct: 71 KEYLGTIRLGQTTVTDDAEGEITASTDASQVTREAVDAGIAALTGDIMQVPSKVSAIKIN 130
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDI----ERSLEDRQ---NLIFRVTCSKGTYIRSL 483
G + Y +AR GE ++ R +++ F + E ED +L+ V CS GTYIR+L
Sbjct: 131 GVRSYKRAREGEDFDIPARPVTVSSFSVYDVREAVAEDGTPVLDLVVSVVCSSGTYIRAL 190
Query: 484 CADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
D G LG HLTALRR +G Y D A EL+E
Sbjct: 191 ARDLGAGLGVGGHLTALRRTRVGPYRLDAAKTLDELQE 228
>gi|320533277|ref|ZP_08033979.1| tRNA pseudouridine synthase B [Actinomyces sp. oral taxon 171 str.
F0337]
gi|320134503|gb|EFW26749.1| tRNA pseudouridine synthase B [Actinomyces sp. oral taxon 171 str.
F0337]
Length = 338
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 91/231 (39%), Positives = 132/231 (57%), Gaps = 19/231 (8%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++V+KP+G TS V G RRL +KVGHAGTLDPMATGLL++ +G+AT+ + G
Sbjct: 8 ILVVDKPQGLTSHDVVGATRRLAATRKVGHAGTLDPMATGLLLLGIGRATRFLTYLVGAG 67
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPW--EHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
K Y RLG T+T DAD + E + ++ + +A S G I QVP + SAIK
Sbjct: 68 KTYEATVRLGVETTTEDADGEITAARGCRIEDLPEDRLEEALTSLTGRIQQVPSVVSAIK 127
Query: 429 VGGEKMYDKARRGESIELSPRRISIFQF----------------DIERSLEDRQNLIFRV 472
V G + Y + R G+ +ELS R ++I + D+ ++E ++ V
Sbjct: 128 VDGVRAYKRVRDGQDVELSARPVTIHELRLTGEPRKTITDGARSDVSDAVEA-VDIDILV 186
Query: 473 TCSKGTYIRSLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
+CS GTY+R+L D G+ALG AHLTALRR ++G + D+A L E +
Sbjct: 187 SCSSGTYVRALARDLGRALGCGAHLTALRRTAVGPFDVDEARTLAALSEQV 237
>gi|379011804|ref|YP_005269616.1| tRNA pseudouridine synthase B [Acetobacterium woodii DSM 1030]
gi|375302593|gb|AFA48727.1| tRNA pseudouridine synthase B [Acetobacterium woodii DSM 1030]
Length = 305
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 90/219 (41%), Positives = 127/219 (57%), Gaps = 5/219 (2%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
V K KG TS V K R+++K KK+GH GTLDP A G+L++CVG+ATK+V+ K Y
Sbjct: 12 VYKEKGMTSHDVVFKARKILKTKKIGHTGTLDPNAEGVLVLCVGQATKMVEYLTDHDKTY 71
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEK 433
LG T T D+D ++ + + I +A F G I Q PP++SAI+V G+K
Sbjct: 72 EAEVVLGIETDTCDSDGAILNKTD-KRITKAAFAQATEQFTGNILQKPPIYSAIRVNGKK 130
Query: 434 MYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKALGS 493
+Y AR GE++ + R + I + + E+ Q VTCSKGTYIRSLC D GK LGS
Sbjct: 131 LYHYARSGEAVVIPEREVFISKLSVLDFCENSQKAKIMVTCSKGTYIRSLCRDIGKYLGS 190
Query: 494 CAHLTALRRDSIGQYSADDAWEFKELEEAIT----KNYF 528
+ +L R +G +S+ DA E+E +T +N+F
Sbjct: 191 LGCMGSLIRHQVGDFSSQDALTLVEIESKVTDGLIENFF 229
>gi|281423715|ref|ZP_06254628.1| tRNA pseudouridine synthase B [Prevotella oris F0302]
gi|281402267|gb|EFB33098.1| tRNA pseudouridine synthase B [Prevotella oris F0302]
Length = 226
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 88/221 (39%), Positives = 134/221 (60%), Gaps = 7/221 (3%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLV------KVKKVGHAGTLDPMATGLLIVCVGKATKL 362
G + ++KP +SF +R ++ KVK +GHAGTLDP+ATG+LI+C GKATK
Sbjct: 6 GEIFAIDKPYRISSFGALAHVRYVLSRTLGYKVK-IGHAGTLDPLATGVLILCTGKATKR 64
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ +QG K Y+ +LG T+++D + V P HI I + F G+I QVPP
Sbjct: 65 IEEFQGQTKEYTATLQLGATTASYDMEHEVNATFPTAHITRALIDEKLQQFIGDIAQVPP 124
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRS 482
FSA+KV G++ Y+ R GE ++LSP++I I + ++ + L RV C KGTYIR+
Sbjct: 125 TFSAVKVNGDRAYELRRAGEEVKLSPKQIHIDEIEVTDFDAGKMLLSIRVVCGKGTYIRA 184
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
L D G+AL S A+LT+LRR +G+++ +++ + E I
Sbjct: 185 LARDLGRALDSGAYLTSLRRTRVGEFTIGKCLDYEHIREWI 225
>gi|333983005|ref|YP_004512215.1| tRNA pseudouridine synthase B [Methylomonas methanica MC09]
gi|333807046|gb|AEF99715.1| tRNA pseudouridine synthase B [Methylomonas methanica MC09]
Length = 303
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 86/211 (40%), Positives = 130/211 (61%), Gaps = 4/211 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+VL++K G +S ++RRL+ K GH G+LDP+ATGLL +C G+ATK+
Sbjct: 13 IVLLDKRLGVSSNKALQEVRRLLNANKAGHTGSLDPLATGLLPLCFGEATKVSGLMLDDD 72
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y RLG+ T T D++ +++ P + ++ + F G I QVPPM+SA+K
Sbjct: 73 KRYQVTLRLGQMTDTGDSEGTIVEEMPIPAFTETELLSSLQRFTGSIEQVPPMYSALKHQ 132
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLE-DRQNLIFRVTCSKGTYIRSLCADFGK 489
G+K+Y+ AR G+++E PRRI+I+ + L+ D + + V CSKGTYIRSL D G
Sbjct: 133 GKKLYELAREGKTVERQPRRITIYALHL---LDFDSETITLDVECSKGTYIRSLAEDLGH 189
Query: 490 ALGSCAHLTALRRDSIGQYSADDAWEFKELE 520
A+GSCA +TALRR + G + ++A ++LE
Sbjct: 190 AMGSCATVTALRRTAAGMFRLENAHTLEQLE 220
>gi|291454481|ref|ZP_06593871.1| tRNA pseudouridine synthase B [Streptomyces albus J1074]
gi|359148622|ref|ZP_09181748.1| tRNA pseudouridine synthase B [Streptomyces sp. S4]
gi|421744585|ref|ZP_16182557.1| tRNA pseudouridine 55 synthase [Streptomyces sp. SM8]
gi|291357430|gb|EFE84332.1| tRNA pseudouridine synthase B [Streptomyces albus J1074]
gi|406687003|gb|EKC91052.1| tRNA pseudouridine 55 synthase [Streptomyces sp. SM8]
Length = 301
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 88/221 (39%), Positives = 126/221 (57%), Gaps = 7/221 (3%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G+TS V K+R + + ++VGHAGTLDPMATG+L++ V +ATKL+
Sbjct: 11 LVVVDKPSGFTSHDVVAKMRGIARTRRVGHAGTLDPMATGVLVLGVERATKLLGHLALTE 70
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y G RLG+ T T DA+ + I + A G+I QVP SAIK+
Sbjct: 71 KEYLGTIRLGQTTVTDDAEGEITASADASGIGRAAVDAGVAELTGDIMQVPSKVSAIKID 130
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQ-------NLIFRVTCSKGTYIRSL 483
G++ Y + R GE E+ R +++ F + ED+ +L+ V CS GTYIR+L
Sbjct: 131 GKRSYTRVREGEEFEIPARPVTVSSFTVYDVREDKAADGTPVLDLVVSVVCSSGTYIRAL 190
Query: 484 CADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAIT 524
D G +LG HLTALRR +G Y D A ++L+E +T
Sbjct: 191 ARDLGASLGVGGHLTALRRTRVGPYGLDAAKTLEQLQEELT 231
>gi|228992538|ref|ZP_04152465.1| tRNA pseudouridine synthase B [Bacillus pseudomycoides DSM 12442]
gi|228767172|gb|EEM15808.1| tRNA pseudouridine synthase B [Bacillus pseudomycoides DSM 12442]
Length = 307
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 89/219 (40%), Positives = 134/219 (61%), Gaps = 11/219 (5%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L++KPKG TS KLR++++ K++GH GTLDP TG+L +CVG+ATK+
Sbjct: 4 VLLLHKPKGMTSHDCVFKLRKILREKRIGHTGTLDPDVTGVLPICVGRATKIAQFLTSET 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V+ ++ I ++ A G I QVPPM+SA+KV
Sbjct: 64 KTYEGEVTLGFSTTTEDASGEVVGKQDVNRVITRAEVETVLAELTGTIEQVPPMYSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQ-------NLIFRVTCSKGTYIRS 482
G+K+Y+ AR G+ +E R I+I +F + L+DR+ + FRVTCSKGTY+R+
Sbjct: 124 NGKKLYEYARAGQEVERPVRVITIHEFVL---LDDREVFEGKNISFRFRVTCSKGTYVRT 180
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
L G+ LG AH++ L R + G++ +D F+E+EE
Sbjct: 181 LAVMIGEKLGFPAHMSHLVRTASGEFLLEDCISFEEIEE 219
>gi|415721839|ref|ZP_11468772.1| tRNA pseudouridine synthase B [Gardnerella vaginalis 00703Bmash]
gi|388060544|gb|EIK83236.1| tRNA pseudouridine synthase B [Gardnerella vaginalis 00703Bmash]
Length = 404
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 97/228 (42%), Positives = 126/228 (55%), Gaps = 17/228 (7%)
Query: 307 PFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRY 366
P ++LV+KPKG TS V R L+ K+VGHAGTLDPMATGLLI+ G AT+L++
Sbjct: 8 PSSGILLVDKPKGVTSHDVVSFARGLLHTKRVGHAGTLDPMATGLLILGFGNATRLLNYL 67
Query: 367 QGMIKGYSGVFRLGEATSTWDADSPVIQREPWEH----------IKDEDIRKAAASFRGE 416
G K Y V RLGE+T+T DAD V+ E+ I E A +F G
Sbjct: 68 LGHNKTYEAVIRLGESTNTDDADGDVVSSADDENGIINFANIDEILKELRAVIAKNFTGS 127
Query: 417 IWQVPPMFSAIKVGGEKMYDKARRGESIELSPRRISIF-------QFDIERSLEDRQNLI 469
I Q P FSAIKV G + YD AR G+ + L PR + I+ F + S ++
Sbjct: 128 IMQTPTSFSAIKVNGVRAYDLAREGKDVHLEPREVFIYDFSLLDAHFSVGVSGAKVIDVR 187
Query: 470 FRVTCSKGTYIRSLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFK 517
V+CS GTYIR+L D G+ LG HL +LRR IG +S +D+ K
Sbjct: 188 ASVSCSSGTYIRALARDLGRILGVGGHLVSLRRTRIGDFSIEDSRVLK 235
>gi|429200778|ref|ZP_19192446.1| tRNA pseudouridine synthase B [Streptomyces ipomoeae 91-03]
gi|428663521|gb|EKX62876.1| tRNA pseudouridine synthase B [Streptomyces ipomoeae 91-03]
Length = 304
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 91/221 (41%), Positives = 125/221 (56%), Gaps = 7/221 (3%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G+TS V K+R + + ++VGHAGTLDPMATG+L++ V KATKL+
Sbjct: 14 LVIVDKPSGFTSHDVVAKMRGIARTRRVGHAGTLDPMATGVLVLGVEKATKLLGHLALTE 73
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y G RLG+ T T DA+ + + + I A G+I QVP SAIK+
Sbjct: 74 KEYLGTIRLGQTTVTDDAEGEITSSTDASKVTRDAIDTGIAKLTGDIMQVPSKVSAIKID 133
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDI----ERSLEDRQ---NLIFRVTCSKGTYIRSL 483
G + Y +AR GE E+ R ++I F + + ED +L+ V CS GTYIR+L
Sbjct: 134 GVRSYKRAREGEEFEIPARPVTISSFAVYDVRDAVAEDGTPVLDLVVSVVCSSGTYIRAL 193
Query: 484 CADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAIT 524
D G LG HLTALRR +G Y D A +L+E +T
Sbjct: 194 ARDLGAGLGVGGHLTALRRTRVGPYKLDSARTLDQLQEELT 234
>gi|304390816|ref|ZP_07372768.1| tRNA pseudouridine synthase B [Mobiluncus curtisii subsp. curtisii
ATCC 35241]
gi|304325699|gb|EFL92945.1| tRNA pseudouridine synthase B [Mobiluncus curtisii subsp. curtisii
ATCC 35241]
Length = 354
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 95/222 (42%), Positives = 130/222 (58%), Gaps = 14/222 (6%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP+G +S V ++RRL KKVG+AGTLDP+ATG+LI +GKAT+L+
Sbjct: 25 LVVVDKPRGLSSNAVASRIRRLAGQKKVGYAGTLDPLATGILICAIGKATRLLQYLTAHD 84
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y+ R G +T T DA VI R + +I A +RG + Q+P FSAIK+G
Sbjct: 85 KVYTARVRFGISTDTDDALGQVISRA-GAALSTAEIMAALEPWRGAVDQIPAKFSAIKIG 143
Query: 431 GEKMYDKARRGESIELSPRRISIFQFD------IERSLEDRQNLIFRVT-------CSKG 477
G++ YD AR G+++E+ PR ++I + + +E D N +VT CS G
Sbjct: 144 GKRAYDLARAGKNVEIQPRPVTIHRLELRGAPVLETVAGDDSNPPVQVTDADIVLGCSAG 203
Query: 478 TYIRSLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKEL 519
TY+RSL D G LG AHLTALRR S+G Y D A EL
Sbjct: 204 TYVRSLARDLGADLGVGAHLTALRRISVGSYGLDQAHSLSEL 245
>gi|229006086|ref|ZP_04163774.1| tRNA pseudouridine synthase B [Bacillus mycoides Rock1-4]
gi|228755162|gb|EEM04519.1| tRNA pseudouridine synthase B [Bacillus mycoides Rock1-4]
Length = 261
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 89/219 (40%), Positives = 135/219 (61%), Gaps = 11/219 (5%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L++KPKG TS KLR++++ K++GH GTLDP TG+L +CVG+ATK+
Sbjct: 4 VLLLHKPKGMTSHDCVFKLRKILREKRIGHTGTLDPDVTGVLPICVGRATKIAQFLTSET 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V++++ I ++ A G I QVPPM+SA+KV
Sbjct: 64 KTYEGEVTLGFSTTTEDASGEVVEKQDVNRVITRAEVETVLAELTGTIEQVPPMYSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQ-------NLIFRVTCSKGTYIRS 482
G+K+Y+ AR G+ +E R I+I +F + L+DR+ + FRVTCSKGTY+R+
Sbjct: 124 NGKKLYEYARAGQEVERPVRVITIHEFVL---LDDREVFEGKNISFRFRVTCSKGTYVRT 180
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
L G+ LG AH++ L R + G++ +D F+E+EE
Sbjct: 181 LAVMIGEKLGFPAHMSHLVRTASGEFLLEDCISFEEIEE 219
>gi|441521204|ref|ZP_21002865.1| tRNA pseudouridine synthase B [Gordonia sihwensis NBRC 108236]
gi|441459036|dbj|GAC60826.1| tRNA pseudouridine synthase B [Gordonia sihwensis NBRC 108236]
Length = 299
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 87/213 (40%), Positives = 128/213 (60%), Gaps = 2/213 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++V+K G TS V K R+ ++VGHAGTLDPMATG+L++ + +ATKL+
Sbjct: 11 LLVVDKAAGITSHDVVAKCRKAFNTRRVGHAGTLDPMATGVLVIGIERATKLLGLLSLTT 70
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y+ RLG++TST DA+ VI+ ++DE+I AS G+I QVP SAIKV
Sbjct: 71 KSYAATIRLGQSTSTDDAEGEVIESRDASGVRDEEIAAVVASLTGDIEQVPAKVSAIKVD 130
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQ--NLIFRVTCSKGTYIRSLCADFG 488
G + + R G EL R +++ +FD+ + D + +L V CS GTYIRSL D G
Sbjct: 131 GRRAHALVRTGAEFELQARPVTVDRFDVVDTRRDGEFIDLDVEVDCSSGTYIRSLARDLG 190
Query: 489 KALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
ALG HLTALRR ++G ++ + + +++E
Sbjct: 191 AALGVGGHLTALRRTAVGPFTLEHSRTMADVDE 223
>gi|387133787|ref|YP_006299759.1| tRNA pseudouridine(55) synthase [Prevotella intermedia 17]
gi|386376635|gb|AFJ08606.1| tRNA pseudouridine(55) synthase [Prevotella intermedia 17]
Length = 235
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 86/218 (39%), Positives = 123/218 (56%), Gaps = 5/218 (2%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVK-----KVGHAGTLDPMATGLLIVCVGKATKLV 363
G ++ ++KP G TSF +R L K+GHAGTLDP+ATG+LI+ GK TK +
Sbjct: 6 GVIIPIDKPYGITSFKALAHVRYLCSKAQGGRVKIGHAGTLDPLATGVLILATGKMTKQI 65
Query: 364 DRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPM 423
+ Q K Y +LG T ++D + + P EHI E I A F G+I QVPP
Sbjct: 66 ETLQTHTKEYVATMQLGATTPSYDMEHEENETFPTEHITRELIETALQQFIGDIEQVPPT 125
Query: 424 FSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSL 483
+SA+KV G++ +D R GE + L P++I I + +I R ++ L RV C KGTYIR+L
Sbjct: 126 YSAVKVNGQRAFDYRRNGEDVVLKPKKIRIDEIEITRFDAEKMQLTLRVVCGKGTYIRAL 185
Query: 484 CADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
D G+A+ S A+L ALRR +G + + +E
Sbjct: 186 ARDLGRAINSGAYLVALRRTQVGDIRVEKCINYDHFQE 223
>gi|312194988|ref|YP_004015049.1| tRNA pseudouridine synthase B [Frankia sp. EuI1c]
gi|311226324|gb|ADP79179.1| tRNA pseudouridine synthase B [Frankia sp. EuI1c]
Length = 317
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 93/229 (40%), Positives = 131/229 (57%), Gaps = 15/229 (6%)
Query: 302 PTWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATK 361
P DG +V+V+KP GWTS V K RR+++ +K+GHAGTLDPMATG+L++ VG+ATK
Sbjct: 20 PAPDG----LVIVDKPAGWTSHDVVAKARRILRTRKIGHAGTLDPMATGVLVLGVGRATK 75
Query: 362 LVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVP 421
L+ K Y V RLG T T DA+ ++ P + + + A GEI QVP
Sbjct: 76 LLGHLALTDKEYEAVIRLGVTTVTDDAEGEPVEERPVDATA-DALAAAIGRLTGEIDQVP 134
Query: 422 PMFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDR---------QNLIFRV 472
SA+K+ G++ Y + R GE ++L+PRR+++ F++ R DR +L RV
Sbjct: 135 SSVSAVKIDGKRAYARVRSGEEVQLAPRRVTVSAFEL-RERRDRDTGAPDPAGTDLAVRV 193
Query: 473 TCSKGTYIRSLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
CS GTY+R+L D G LG HLT LRR +G + DA + E
Sbjct: 194 ACSSGTYVRALARDVGADLGCGGHLTYLRRTRVGPFEVADALDLDAFAE 242
>gi|419971105|ref|ZP_14486572.1| tRNA pseudouridine(55) synthase [Porphyromonas gingivalis W50]
gi|392609445|gb|EIW92254.1| tRNA pseudouridine(55) synthase [Porphyromonas gingivalis W50]
Length = 258
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 92/220 (41%), Positives = 129/220 (58%), Gaps = 10/220 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR----RLVKVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G ++ +KP WTSF + K R R + +KK VGHAGTLDP+A+G++I+C G+ATK
Sbjct: 13 GEVLYFDKPLTWTSFDLVNKFRYRACRRMGIKKLRVGHAGTLDPLASGVMILCTGRATKQ 72
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
+D Q K Y RLG T ++D ++ P+EHI + I F G I QVPP
Sbjct: 73 IDVLQAGTKEYIAAIRLGATTPSFDKETEPDAFFPYEHITRQSILDILPRFTGTIEQVPP 132
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLI-FRVTCSKGTYIR 481
+FSA++V G++ YD AR+G+ +E+ R + I + ++ LE LI R+ CSKGTYIR
Sbjct: 133 IFSAVRVNGKRAYDLARKGKEVEMKTRTLQIDEIEL---LEYALPLITLRIVCSKGTYIR 189
Query: 482 SLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
+L D AL S HL ALRR +G +D ELE+
Sbjct: 190 ALARDIATALESGGHLEALRRTRVGNARIEDCLSMDELEQ 229
>gi|294674503|ref|YP_003575119.1| tRNA pseudouridine synthase B [Prevotella ruminicola 23]
gi|294473853|gb|ADE83242.1| tRNA pseudouridine synthase B [Prevotella ruminicola 23]
Length = 234
Score = 169 bits (428), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 94/228 (41%), Positives = 130/228 (57%), Gaps = 10/228 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRL------VKVKKVGHAGTLDPMATGLLIVCVGKATKL 362
G + +NKP +SF +R + VK K+GHAGTLDP+ATG+L++C GKATK
Sbjct: 6 GAYIYINKPYRMSSFGALAHIRYVLSKRLHVKRVKMGHAGTLDPLATGVLVLCTGKATKQ 65
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ Q K Y+ +LG T ++D + V P HI E I + F G+I Q PP
Sbjct: 66 IEALQLHSKEYTATLQLGATTPSYDLEHEVDATYPTAHITRELIEQTLPRFVGDIMQRPP 125
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRS 482
+FSA KVGG++ Y+ AR+G +L+ + + I + +I ++ L RV C KGTYIRS
Sbjct: 126 LFSACKVGGDRAYELARKGSDHQLAEKPVHIDEIEIIDFDPEKMQLQIRVGCGKGTYIRS 185
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKE----LEEAITKN 526
L D G+ALGS AHLTAL R +G +D F E LEE + N
Sbjct: 186 LARDIGEALGSGAHLTALCRTRVGDVRLEDCLTFDEFPAWLEEKLNIN 233
>gi|302039401|ref|YP_003799723.1| tRNA pseudouridine synthase B [Candidatus Nitrospira defluvii]
gi|300607465|emb|CBK43798.1| tRNA pseudouridine synthase B [Candidatus Nitrospira defluvii]
Length = 337
Score = 169 bits (428), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 88/217 (40%), Positives = 122/217 (56%), Gaps = 6/217 (2%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
V K GWTS V ++R ++ K+GHAGTLDP ATG+L + VG+ T++ + K Y
Sbjct: 16 VRKEAGWTSHDVVARIRGKLRGMKLGHAGTLDPAATGVLPLLVGRGTRIAEFLLEWDKTY 75
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEK 433
RLGE T T D+ V+ R P E + + IR+ A F G I Q+PPM+SA+KVGG
Sbjct: 76 LAGLRLGETTDTQDSTGTVLLRSPTESLSEARIREVVAGFEGRIQQLPPMYSAVKVGGVP 135
Query: 434 MYDKARRGESIELSPRRISIFQFDIERSLEDRQ--NLIFRVTCSKGTYIRSLCADFGKAL 491
+Y AR G + R +++F+ DI D Q + RV CSKGTYIR+LCAD G L
Sbjct: 136 LYKAARAGREVSRQAREVTVFRLDI----VDIQIPEVTLRVVCSKGTYIRTLCADIGDKL 191
Query: 492 GSCAHLTALRRDSIGQYSADDAWEFKELEEAITKNYF 528
G H+ L R+ +G + D A E+E + +
Sbjct: 192 GVGGHMARLVRERVGPLTVDQALTVDEVESRLEQGTL 228
>gi|425735422|ref|ZP_18853736.1| tRNA pseudouridine synthase B [Brevibacterium casei S18]
gi|425479828|gb|EKU47000.1| tRNA pseudouridine synthase B [Brevibacterium casei S18]
Length = 308
Score = 169 bits (428), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 92/210 (43%), Positives = 123/210 (58%), Gaps = 9/210 (4%)
Query: 307 PFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRY 366
P G +V +KP+G +S V ++RR +KVGHAGTLDPMATG+L++ +G+ TKL+
Sbjct: 6 PQGILV-CDKPQGLSSHAVVSRIRRWYGTRKVGHAGTLDPMATGVLVLGLGRGTKLLGHI 64
Query: 367 QGMIKGYSGVFRLGEATSTWDADS-PVIQREP--WEHIKDEDIRKAAASFRGEIWQVPPM 423
G+ K Y+ RLG T T DADS P + +P + D DI + RG I QVP
Sbjct: 65 TGVSKTYAATIRLGAGTPTDDADSEPDVFADPARLAAVTDADIASGVTALRGPIDQVPSA 124
Query: 424 FSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQ-----NLIFRVTCSKGT 478
SAIKV G++ Y + R GE + L PRR+ + QFD+ + D +L V CS GT
Sbjct: 125 VSAIKVDGKRSYARVRAGEDVVLEPRRVEVTQFDVLETRRDSAGGGHIDLDVVVDCSSGT 184
Query: 479 YIRSLCADFGKALGSCAHLTALRRDSIGQY 508
YIR+L D G LG HLTALRR +G +
Sbjct: 185 YIRALARDLGAGLGVHGHLTALRRTRVGPF 214
>gi|424788009|ref|ZP_18214771.1| tRNA pseudouridine(55) synthase [Streptococcus intermedius BA1]
gi|422113118|gb|EKU16867.1| tRNA pseudouridine(55) synthase [Streptococcus intermedius BA1]
Length = 292
Score = 169 bits (428), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 94/224 (41%), Positives = 132/224 (58%), Gaps = 8/224 (3%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ + K G TS KLR+++K KK+GH GTLDP G+L + VGKAT+LV+ Q
Sbjct: 4 IINLRKEAGMTSHDAVFKLRKILKTKKIGHGGTLDPDVVGVLPIAVGKATRLVEFMQEEG 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDED-IRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA +++R P + +E I +A S GEI Q+PPM+SA+KV
Sbjct: 64 KVYEGEITLGCSTTTEDASGDILERTPVTELLEEALIDEAMESMTGEIRQIPPMYSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIER----SLEDRQ-NLIFRVTCSKGTYIRSLC 484
G K+Y+ R G+ +E R+++I+ F ER S ED Q FRV CSKGTY+R+L
Sbjct: 124 NGRKLYEYVRAGQEVERPERQVTIYSF--ERTSPISYEDEQARFRFRVKCSKGTYVRTLS 181
Query: 485 ADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAITKNYF 528
D G LG +H++ L R S S DDA E+ E + + F
Sbjct: 182 VDLGAKLGFASHMSQLTRTSSAGMSLDDALTLDEIAERVAVDDF 225
>gi|429505220|ref|YP_007186404.1| tRNA pseudouridine synthase B [Bacillus amyloliquefaciens subsp.
plantarum AS43.3]
gi|429486810|gb|AFZ90734.1| tRNA pseudouridine synthase B [Bacillus amyloliquefaciens subsp.
plantarum AS43.3]
Length = 309
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 89/218 (40%), Positives = 132/218 (60%), Gaps = 4/218 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L++KP G TS K+R+L+K KKVGH GTLDP +G+L +CVG+ATK+V+
Sbjct: 5 VLLLHKPVGMTSHDCVMKIRKLLKTKKVGHTGTLDPAVSGVLPICVGRATKIVEYVTDKS 64
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPW-EHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y LG +TST D + +P E +K+ DI+ +G QVPPM+SA+KV
Sbjct: 65 KTYDAEITLGFSTSTEDQTGETVSVKPVKEPLKEADIKAVLDELKGPQEQVPPMYSAVKV 124
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIERSL---EDRQNLIFRVTCSKGTYIRSLCAD 486
G+K+Y+ AR G +E R I+I + + ED + F VTCSKGTY+R+L
Sbjct: 125 NGKKLYEYARAGIEVERPKRNITIEDIALTSPVTYKEDTASFRFTVTCSKGTYVRTLAVT 184
Query: 487 FGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAIT 524
G+ LG AH++ L R + G +S D+ + F+ELE+ ++
Sbjct: 185 IGEKLGYPAHMSHLIRTASGDFSLDECFTFEELEQQVS 222
>gi|149196217|ref|ZP_01873272.1| tRNA pseudouridine synthase B [Lentisphaera araneosa HTCC2155]
gi|149140478|gb|EDM28876.1| tRNA pseudouridine synthase B [Lentisphaera araneosa HTCC2155]
Length = 245
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 86/218 (39%), Positives = 129/218 (59%), Gaps = 4/218 (1%)
Query: 302 PTWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATK 361
PT D F ++LV+KPK WTS V +R + KVGH GTLDP+ATGL++V +GKATK
Sbjct: 9 PTPD--FDGILLVDKPKEWTSHDVVNLVRNRYRFNKVGHCGTLDPLATGLIVVVIGKATK 66
Query: 362 LVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVP 421
L + K Y LG T++ D + + ++H+ +E I++ A F G+ Q+P
Sbjct: 67 LASKLTSDDKTYITEMTLGRETASHDEEGETTREASFDHVTEEQIQQCAKDFTGDQMQIP 126
Query: 422 PMFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIR 481
PM SA+K G+K+Y+ AR+G +E R ++ DI++ D + F + CSKG+Y+R
Sbjct: 127 PMVSALKKDGKKLYELARQGIEVEREARPVTFHSLDIDKI--DLPKVHFTLHCSKGSYVR 184
Query: 482 SLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKEL 519
LC D G+ L + A+++ LRR GQ+ D+A E L
Sbjct: 185 VLCHDMGRKLETAAYMSNLRRTQSGQFLLDNAVEVAHL 222
>gi|387879308|ref|YP_006309611.1| tRNA pseudouridine synthase B [Streptococcus parasanguinis FW213]
gi|386792762|gb|AFJ25797.1| tRNA pseudouridine synthase B [Streptococcus parasanguinis FW213]
Length = 331
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 92/220 (41%), Positives = 129/220 (58%), Gaps = 4/220 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ V K G TS V KLR+++ KK+GH GTLDP G+L + VGKAT++V+ Q
Sbjct: 37 IINVKKEAGMTSHDVVFKLRKILGTKKIGHGGTLDPDVVGVLPIAVGKATRMVEFMQDEG 96
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKD-EDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V++R P E D ++ + A GE+ QVPPM+SA+KV
Sbjct: 97 KIYEGEITLGFSTTTEDASGEVVERTPVEAPLDAAEVDRMIAQMVGEMEQVPPMYSAVKV 156
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLI---FRVTCSKGTYIRSLCAD 486
G K+Y+ AR GE +E R+++I+ F + L FRV CSKGTYIR+L D
Sbjct: 157 NGRKLYEYARAGEEVERPVRQVTIYDFTRTSEISYEGGLARFRFRVKCSKGTYIRTLSVD 216
Query: 487 FGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAITKN 526
G+ LG AH++ L R S S DDA +E+ E + +
Sbjct: 217 LGQKLGYAAHMSHLTRTSAAGLSLDDALTLEEVAEKVAQG 256
>gi|304404296|ref|ZP_07385958.1| tRNA pseudouridine synthase B [Paenibacillus curdlanolyticus YK9]
gi|304347274|gb|EFM13106.1| tRNA pseudouridine synthase B [Paenibacillus curdlanolyticus YK9]
Length = 302
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 85/211 (40%), Positives = 129/211 (61%), Gaps = 2/211 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ V KP GWTS V K+R + +VK++GHAGTLDP TG+L +C+G+AT++V+ Q
Sbjct: 4 ILAVWKPAGWTSHDVVAKVRGITRVKRIGHAGTLDPQVTGVLPLCIGRATRVVEYLQERP 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y V +LG AT T D ++ + E++ A A+F GEI QVPPM+SA+KV
Sbjct: 64 KAYEAVLQLGIATDTEDMTGTTVEEVDSVSVTREEVAAALAAFIGEIDQVPPMYSALKVD 123
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLED--RQNLIFRVTCSKGTYIRSLCADFG 488
G+++Y+ AR G ++E R++ I+Q + ++D R + F V CSKGTYIR+LC D G
Sbjct: 124 GKRLYELAREGVTVERKSRKVQIYQIRLLEFVQDERRPRIRFDVECSKGTYIRTLCVDIG 183
Query: 489 KALGSCAHLTALRRDSIGQYSADDAWEFKEL 519
K L A + L R G + + + +++
Sbjct: 184 KRLNVPATMAELTRTMSGGLTREHCFTIEQI 214
>gi|239618461|ref|YP_002941783.1| tRNA pseudouridine synthase B [Kosmotoga olearia TBF 19.5.1]
gi|239507292|gb|ACR80779.1| tRNA pseudouridine synthase B [Kosmotoga olearia TBF 19.5.1]
Length = 309
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 89/209 (42%), Positives = 127/209 (60%)
Query: 312 VLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIK 371
+ ++KP G TS V ++R+ +KKVGH+GTLDP A+GLLIV VGKAT+L++ +GM K
Sbjct: 7 LFIDKPSGITSHDVVDEIRKKFGIKKVGHSGTLDPFASGLLIVGVGKATRLLEYIKGMDK 66
Query: 372 GYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGG 431
Y +LG T T+D +++ HI +E IR A SF GE QVPP +SA K G
Sbjct: 67 TYEVEMKLGVMTDTFDFTGNLVEERESSHITEEMIRDAIESFTGEYMQVPPAYSAKKYKG 126
Query: 432 EKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKAL 491
E++Y AR+G+ I L P++++I ++ + F V S GTY+RSL D G L
Sbjct: 127 ERLYRLARKGKIINLPPKKVTIHDIYVKSFDPVEMAVSFVVKVSAGTYVRSLVMDIGYKL 186
Query: 492 GSCAHLTALRRDSIGQYSADDAWEFKELE 520
G A T LRR +IG++S DA + E++
Sbjct: 187 GCGATTTFLRRLAIGKFSVSDAVKLDEVD 215
>gi|425736866|ref|ZP_18855142.1| tRNA pseudouridine synthase B [Staphylococcus massiliensis S46]
gi|425483338|gb|EKU50490.1| tRNA pseudouridine synthase B [Staphylococcus massiliensis S46]
Length = 305
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 87/211 (41%), Positives = 128/211 (60%), Gaps = 5/211 (2%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
VNKPKG TS V KLR+++K KKVGH GTLDP TG+L VC+G ATK+ + M K Y
Sbjct: 8 VNKPKGLTSHDVVFKLRKILKTKKVGHTGTLDPEVTGVLPVCIGSATKVSEYIMEMGKTY 67
Query: 374 SGVFRLGEATSTWDADSPVIQREPWE--HIKDEDIRKAAASFRGEIWQVPPMFSAIKVGG 431
+G++T+T D V+ E E +E I ASF GE Q+PPM+S++KV G
Sbjct: 68 RATIAVGQSTTTEDQTGDVLDSEAIEVDAFSNETIDDVLASFLGETTQIPPMYSSVKVKG 127
Query: 432 EKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIF---RVTCSKGTYIRSLCADFG 488
+++Y+ AR E++E R+I I + L + ++++ VTC KGTYIR+L D G
Sbjct: 128 KRLYEYARNNETVERPERQIYIHKIARLGDLNYQDDMLYFEIEVTCGKGTYIRTLATDIG 187
Query: 489 KALGSCAHLTALRRDSIGQYSADDAWEFKEL 519
+ LG AH+ L R + G ++ +D++ +E+
Sbjct: 188 RKLGKPAHMHQLERTNSGGFNLNDSFTLEEI 218
>gi|325672785|ref|ZP_08152481.1| tRNA pseudouridine synthase B [Rhodococcus equi ATCC 33707]
gi|325556662|gb|EGD26328.1| tRNA pseudouridine synthase B [Rhodococcus equi ATCC 33707]
Length = 308
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 92/220 (41%), Positives = 128/220 (58%), Gaps = 12/220 (5%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++V+K G TS V + R+L+ +KVGHAGTLDPMATG+LI+ V +ATKL+
Sbjct: 16 LLIVDKEAGMTSHDVVSRCRKLLNTRKVGHAGTLDPMATGVLILGVERATKLLGLLALTT 75
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K YS RLG+AT+T DA+ V+ + DE I A G+I QVP SAIKV
Sbjct: 76 KSYSATIRLGQATTTDDAEGEVLTTADASAVTDEQIAAEIAKLTGDIQQVPASVSAIKVD 135
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQ---------NLIFRVTCSKGTYIR 481
G++ + R GE + L+ R +++ +FD+ L R +L V CS GTYIR
Sbjct: 136 GQRAHALIRAGEEVTLAARPVTVSRFDV---LARRDVPGDSGGFVDLDVDVDCSSGTYIR 192
Query: 482 SLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
+L D G ALG HLTALRR S+G ++ + A ++L E
Sbjct: 193 ALARDLGAALGVGGHLTALRRTSVGPFTLEHARTLEQLTE 232
>gi|323356814|ref|YP_004223210.1| pseudouridine synthase [Microbacterium testaceum StLB037]
gi|323273185|dbj|BAJ73330.1| pseudouridine synthase [Microbacterium testaceum StLB037]
Length = 294
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 92/213 (43%), Positives = 120/213 (56%), Gaps = 2/213 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++LV+KP G TS V + RR + +K+GHAGTLDPMATGLL++ V AT+L+ G
Sbjct: 6 ILLVDKPGGITSHDVVSRARRALGTRKIGHAGTLDPMATGLLVLGVEGATRLLTYIVGAD 65
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y LG AT + DAD R + D+ I A GEI QVP SAIKV
Sbjct: 66 KTYEATILLGVATDSDDADGVETSRADATDVTDDAIAAGIADLTGEIEQVPSTVSAIKVA 125
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDI--ERSLEDRQNLIFRVTCSKGTYIRSLCADFG 488
G + YD AR GE +EL RR+++ +FD+ R + L V C+ GTYIR+L D G
Sbjct: 126 GRRAYDLARAGEEVELKARRVTVSRFDVLTVRRGDGVIELDVVVDCTSGTYIRALARDLG 185
Query: 489 KALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
+AL HLTALRR IG + A ++ E
Sbjct: 186 RALSVGGHLTALRRTRIGSFDVPAAASVDDIAE 218
>gi|226323224|ref|ZP_03798742.1| hypothetical protein COPCOM_00996 [Coprococcus comes ATCC 27758]
gi|225208414|gb|EEG90768.1| tRNA pseudouridine synthase B [Coprococcus comes ATCC 27758]
Length = 302
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 90/209 (43%), Positives = 124/209 (59%), Gaps = 4/209 (1%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
V K KG+TS V KLR +VK KK+GH GTLDP A G+L VC GKATKL D K Y
Sbjct: 8 VYKEKGYTSHDVVAKLRGIVKQKKIGHTGTLDPDAEGVLPVCFGKATKLCDLLTDKDKTY 67
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEK 433
V LG+ T T D V+++ E + +E + SF GE Q+PPM+SA+KV G+K
Sbjct: 68 QAVLLLGQVTDTQDTSGQVLEKHSTEDLTNEKVENVIRSFEGEYDQIPPMYSALKVNGKK 127
Query: 434 MYDKARRGESIELSPRRISIFQFDI-ERSLEDRQNLIFRVTCSKGTYIRSLCADFGKALG 492
+Y+ AR G+ +E RRI+I + I E +L + + VTCSKGTYIR+LC D G+ LG
Sbjct: 128 LYELAREGKEVERKARRITIHEIRILEINLPEVK---LEVTCSKGTYIRTLCHDIGQKLG 184
Query: 493 SCAHLTALRRDSIGQYSADDAWEFKELEE 521
+ L R + ++ +D+ E+ +
Sbjct: 185 CGGCMKELLRTRVERFGLEDSIRLGEIAQ 213
>gi|404486942|ref|ZP_11022129.1| tRNA pseudouridine synthase B [Barnesiella intestinihominis YIT
11860]
gi|404335438|gb|EJZ61907.1| tRNA pseudouridine synthase B [Barnesiella intestinihominis YIT
11860]
Length = 239
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 86/221 (38%), Positives = 131/221 (59%), Gaps = 8/221 (3%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLV------KVKKVGHAGTLDPMATGLLIVCVGKATKL 362
G ++ ++KP WTSF V ++R + K KVGHAGTLDP+ATG++I+C G+ATK
Sbjct: 6 GEIIYIDKPLHWTSFDVVKRIRLRILRRIKQKKLKVGHAGTLDPLATGVMIICTGRATKR 65
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ +Q K Y RLG T ++D ++ + P EHI E + + F G I Q+PP
Sbjct: 66 IEEFQYQTKEYIATLRLGATTPSFDLETEIDGVYPHEHITRESVERTLPRFVGSIMQIPP 125
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRS 482
+SA KV G + YD AR+G++++L P+ + I + ++ + + RV CSKGTYIR+
Sbjct: 126 SYSACKVDGRRAYDMARKGQAVDLKPKELVIDEIELLSC--ELPEIKIRVVCSKGTYIRA 183
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
L D G+ALGS AHL L R +G + D +++ + I
Sbjct: 184 LARDIGEALGSGAHLVGLIRTRVGDVTLADCLSVEQVADMI 224
>gi|373461337|ref|ZP_09553079.1| tRNA pseudouridine synthase B [Prevotella maculosa OT 289]
gi|371952891|gb|EHO70724.1| tRNA pseudouridine synthase B [Prevotella maculosa OT 289]
Length = 226
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 85/220 (38%), Positives = 134/220 (60%), Gaps = 5/220 (2%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR----RLVKVK-KVGHAGTLDPMATGLLIVCVGKATKLV 363
G + ++KP +SF +R R + K K+GHAGTLDP+ATG+L++C GKATK +
Sbjct: 6 GEVFAIDKPYRISSFGALAHVRYVLSRTLGCKVKIGHAGTLDPLATGVLVLCTGKATKRI 65
Query: 364 DRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPM 423
+ +QG K Y+ +LG T+++D + V P HI I + F G+I Q+PP
Sbjct: 66 EEFQGNSKEYAATLQLGATTASYDREHEVNATFPTAHISRALIAETLPQFIGDIEQIPPT 125
Query: 424 FSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSL 483
+SA+KV G++ Y+ R GE ++L P+++ I + ++ ++ L RV C KGTYIR+L
Sbjct: 126 YSAVKVNGDRAYELRRAGEEVKLKPKQVHIDEIEVTDFDAEKMLLSLRVVCGKGTYIRAL 185
Query: 484 CADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
D G+AL S A+LTALRR +G+++ D +++ + E I
Sbjct: 186 ARDLGRALDSGAYLTALRRTRVGEFTVDKCLDYEHIREWI 225
>gi|339450771|ref|ZP_08654141.1| pseudouridylate synthase [Leuconostoc lactis KCTC 3528]
Length = 223
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 94/202 (46%), Positives = 119/202 (58%), Gaps = 4/202 (1%)
Query: 305 DGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVD 364
+ P +++VNKPKG TSF V K+RR V KKVGHAGTLDP G+L+V +GKATKL+D
Sbjct: 4 NNPVDGILVVNKPKGVTSFDVVAKVRRAVGQKKVGHAGTLDPNVDGVLVVALGKATKLID 63
Query: 365 RYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPM 423
Q K Y G LG AT T D D V+ +P D I +A A G I QVPPM
Sbjct: 64 ELQARPKRYIGEITLGFATETEDLDGDVVAEQPITTPYTDAAIDQAIAQLNGPIQQVPPM 123
Query: 424 FSAIKVGGEKMYDKARRGESIELSPRRISIFQF---DIERSLEDRQNLIFRVTCSKGTYI 480
FSA+KV G+++Y+ AR GE++ R I+ F R + +Q F T SKGTYI
Sbjct: 124 FSAVKVAGKRLYEYARAGETVTRPVRDAMIYDFHRTSAVRYQQQQQKFNFEATVSKGTYI 183
Query: 481 RSLCADFGKALGSCAHLTALRR 502
R+L D GK L A +T+L R
Sbjct: 184 RTLAVDTGKQLEVPATMTSLTR 205
>gi|325294578|ref|YP_004281092.1| tRNA pseudouridine synthase B [Desulfurobacterium
thermolithotrophum DSM 11699]
gi|325065026|gb|ADY73033.1| tRNA pseudouridine synthase B [Desulfurobacterium
thermolithotrophum DSM 11699]
Length = 276
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 90/217 (41%), Positives = 130/217 (59%), Gaps = 5/217 (2%)
Query: 313 LVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKG 372
+++KP G TS V ++R + +KK+GH GTLDP+ATGLLI+ VGKAT+ + K
Sbjct: 1 MIDKPSGITSTEVVRVIKRFLGIKKIGHTGTLDPLATGLLILAVGKATRFSEYLLKQDKC 60
Query: 373 YSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGE 432
Y R G ++ T+D D ++ P + IK ED+ K +F+GEI QVPP +SAI++ G+
Sbjct: 61 YVVKGRFGLSSDTYDIDGN-LKEVPCQEIKKEDLLKVLNNFKGEIEQVPPPYSAIRIKGK 119
Query: 433 KMYDKARRGESIELSPRRISIFQFD-IERSLEDRQNLIFRVTCSKGTYIRSLCADFGKAL 491
+ Y+ AR+GE +EL PR+I I+ I + D + V CS GTYIRSL D G+AL
Sbjct: 120 RAYELARKGEKVELKPRKIKIYSLKLISFNYPDFE---LEVCCSSGTYIRSLVYDIGRAL 176
Query: 492 GSCAHLTALRRDSIGQYSADDAWEFKELEEAITKNYF 528
G A +T LRR +G+ + D A +L K +
Sbjct: 177 GCAAVVTELRRTKVGKITIDKAISLSKLNRENIKEFL 213
>gi|311114229|ref|YP_003985450.1| tRNA pseudouridine synthase B [Gardnerella vaginalis ATCC 14019]
gi|310945723|gb|ADP38427.1| tRNA pseudouridine synthase B [Gardnerella vaginalis ATCC 14019]
Length = 400
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 95/222 (42%), Positives = 128/222 (57%), Gaps = 23/222 (10%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++LV+KPKG TS V R L+ K+VGHAGTLDPMATGLLI+ G AT+L++ G
Sbjct: 11 ILLVDKPKGVTSHDVVSCARGLLHTKRVGHAGTLDPMATGLLILGFGNATRLLNYLLGHD 70
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHI------KDEDIRK----AAASFRGEIWQV 420
K Y V RLGE+T+T DAD V+ E+ DE +++ A +F G I Q
Sbjct: 71 KTYEAVIRLGESTNTDDADGDVVSSVDDENSILNSANTDEILKELRCVIAKNFTGHIMQT 130
Query: 421 PPMFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIF---------- 470
P FSAIK+ G + YD AR G+ + L PR + I F + L+ R N+
Sbjct: 131 PTAFSAIKINGVRAYDLAREGKDVHLEPREVVIHDFSL---LDARFNVGVSGAKVVDVRA 187
Query: 471 RVTCSKGTYIRSLCADFGKALGSCAHLTALRRDSIGQYSADD 512
++CS GTYIR+L D G+ LG HL +LRR IG++S +D
Sbjct: 188 SISCSSGTYIRALARDLGRVLGVGGHLVSLRRTRIGEFSVED 229
>gi|148380370|ref|YP_001254911.1| tRNA pseudouridine synthase B [Clostridium botulinum A str. ATCC
3502]
gi|153931964|ref|YP_001384590.1| tRNA pseudouridine synthase B [Clostridium botulinum A str. ATCC
19397]
gi|153937079|ref|YP_001388106.1| tRNA pseudouridine synthase B [Clostridium botulinum A str. Hall]
gi|148289854|emb|CAL83962.1| putative tRNA pseudouridine synthase B [Clostridium botulinum A
str. ATCC 3502]
gi|152928008|gb|ABS33508.1| tRNA pseudouridine synthase B [Clostridium botulinum A str. ATCC
19397]
gi|152932993|gb|ABS38492.1| tRNA pseudouridine synthase B [Clostridium botulinum A str. Hall]
Length = 289
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 92/215 (42%), Positives = 130/215 (60%), Gaps = 3/215 (1%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
V KPKG TSF V +R++ K+KKVGH GTLDP+A+G+L VC+GKATK+VD K Y
Sbjct: 7 VLKPKGITSFDVVRDIRKIAKIKKVGHTGTLDPLASGVLPVCIGKATKIVDYIMEGTKTY 66
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEK 433
+LG T T+D + V++ + + E + + + G+I QVPPM+SA+K+ G+K
Sbjct: 67 RVEMKLGTTTDTYDREGTVLEEKEIDLTPIE-VEETIKKYIGDIDQVPPMYSALKINGQK 125
Query: 434 MYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKALGS 493
+YD AR+G +E R+I I+ I D +IF V CSKGTYIRSLC D GK L S
Sbjct: 126 LYDLARKGIEVEREARKIHIYDICILSI--DLPYVIFDVKCSKGTYIRSLCFDIGKDLDS 183
Query: 494 CAHLTALRRDSIGQYSADDAWEFKELEEAITKNYF 528
A + L+R ++ +A + ++L E K Y
Sbjct: 184 GAVMWNLQRLEASPFNIKEAIKLEDLNEENIKQYI 218
>gi|365876737|ref|ZP_09416256.1| tRNA pseudouridine synthase b [Elizabethkingia anophelis Ag1]
gi|442587035|ref|ZP_21005856.1| Pseudouridine synthase [Elizabethkingia anophelis R26]
gi|365755735|gb|EHM97655.1| tRNA pseudouridine synthase b [Elizabethkingia anophelis Ag1]
gi|442563268|gb|ELR80482.1| Pseudouridine synthase [Elizabethkingia anophelis R26]
Length = 235
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 94/211 (44%), Positives = 129/211 (61%), Gaps = 8/211 (3%)
Query: 309 GTMVLVNKPKGWTSFTVCGK----LRRLVKVKKV--GHAGTLDPMATGLLIVCVGKATKL 362
G ++LV+KP WTSF K L+R K+KKV GHAGTLDP ATGLL++C GKATK
Sbjct: 11 GQILLVDKPLDWTSFNAVNKIKWKLKREFKLKKVKVGHAGTLDPRATGLLVICTGKATKQ 70
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
+ + Q K Y ++G T ++D + P I + I + +I A F GEI Q PP
Sbjct: 71 IPQIQDASKEYWAEIKIGVQTESYDTEKPEILPQDISGITEANIHNALKKFLGEIDQKPP 130
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRS 482
+FSA+KV G++ YD AR G+ +++ R+ +I D R + + F V CSKGTYIRS
Sbjct: 131 IFSALKVDGKRAYDLARAGQEVDIKIRKTTIHYID--RVEINLPYVSFYVGCSKGTYIRS 188
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDA 513
L D G+ LG A+LT LRR IG+Y+ ++A
Sbjct: 189 LAHDIGQELGVGAYLTQLRRTKIGEYAIENA 219
>gi|315656406|ref|ZP_07909295.1| tRNA pseudouridine synthase B [Mobiluncus curtisii subsp. holmesii
ATCC 35242]
gi|315492965|gb|EFU82567.1| tRNA pseudouridine synthase B [Mobiluncus curtisii subsp. holmesii
ATCC 35242]
Length = 354
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 94/228 (41%), Positives = 132/228 (57%), Gaps = 14/228 (6%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP+G +S V ++RRL KKVG+AGTLDP+ATG+LI +GKAT+L+
Sbjct: 25 LVIVDKPRGLSSNAVASRIRRLAGQKKVGYAGTLDPLATGILICAIGKATRLLQYLTAHD 84
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y+ R G +T T DA V+ R + +I A +RG + Q+P FSAIK+G
Sbjct: 85 KVYTARVRFGISTDTDDALGQVLSRA-GAALSTAEITAALEPWRGAVDQIPAKFSAIKIG 143
Query: 431 GEKMYDKARRGESIELSPRRISIFQFD------IERSLEDRQNLIFRVT-------CSKG 477
G++ YD AR G+++E+ PR ++I + + +E D N +VT CS G
Sbjct: 144 GKRAYDLARAGKNVEIQPRPVTIHRLELRGAPVLETVAGDDSNPPVQVTDADIVVGCSAG 203
Query: 478 TYIRSLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAITK 525
TY+RSL D G LG AHLTALRR S+G Y D A E E + +
Sbjct: 204 TYVRSLARDLGADLGVGAHLTALRRISVGSYGLDQAHSLSEFETEVRR 251
>gi|168216970|ref|ZP_02642595.1| tRNA pseudouridine synthase B [Clostridium perfringens NCTC 8239]
gi|182380913|gb|EDT78392.1| tRNA pseudouridine synthase B [Clostridium perfringens NCTC 8239]
Length = 294
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 87/215 (40%), Positives = 127/215 (59%), Gaps = 1/215 (0%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
+ K G TSF V +RR+ K+KKVGH GTLDP A+G+L VC+GKATK++D K Y
Sbjct: 7 IYKNTGMTSFDVVAIVRRVAKMKKVGHTGTLDPAASGVLPVCLGKATKIIDYIMENKKVY 66
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEK 433
+LG T T+D + V++ + HI + I SF G I QVPPM+SA+K G +
Sbjct: 67 RVNLKLGMVTDTYDLEGEVLREKDASHITKDKILNCINSFVGTIDQVPPMYSALKQNGVR 126
Query: 434 MYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKALGS 493
+Y+ AR+G + R+I+I+ + +E N+ V CSKGTYIRSLC D G+ L
Sbjct: 127 LYELARQGIEVHREARKITIYSIE-NIKIESNDNIQMDVCCSKGTYIRSLCYDIGEKLNV 185
Query: 494 CAHLTALRRDSIGQYSADDAWEFKELEEAITKNYF 528
A +TAL R G ++ ++A ++L E + + +
Sbjct: 186 GATMTALERIQNGPFTKEEAINIEDLTEELLEKHI 220
>gi|298345259|ref|YP_003717946.1| putative tRNA-pseudouridine synthase I [Mobiluncus curtisii ATCC
43063]
gi|298235320|gb|ADI66452.1| possible tRNA-pseudouridine synthase I [Mobiluncus curtisii ATCC
43063]
Length = 354
Score = 169 bits (427), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 94/228 (41%), Positives = 132/228 (57%), Gaps = 14/228 (6%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP+G +S V ++RRL KKVG+AGTLDP+ATG+LI +GKAT+L+
Sbjct: 25 LVIVDKPRGLSSNAVASRIRRLAGQKKVGYAGTLDPLATGILICAIGKATRLLQYLTAHD 84
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y+ R G +T T DA V+ R + +I A +RG + Q+P FSAIK+G
Sbjct: 85 KVYTARVRFGISTDTDDALGQVLSRA-GAALSTAEITAALEPWRGAVDQIPAKFSAIKIG 143
Query: 431 GEKMYDKARRGESIELSPRRISIFQFD------IERSLEDRQNLIFRVT-------CSKG 477
G++ YD AR G+++E+ PR ++I + + +E D N +VT CS G
Sbjct: 144 GKRAYDLARAGKNVEIQPRPVTIHRLELRGAPVLETVAGDDSNPPVQVTDADIVVGCSAG 203
Query: 478 TYIRSLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAITK 525
TY+RSL D G LG AHLTALRR S+G Y D A E E + +
Sbjct: 204 TYVRSLARDLGADLGVGAHLTALRRISVGSYGLDQAHSLSEFETEVRR 251
>gi|187928212|ref|YP_001898699.1| tRNA pseudouridine synthase B [Ralstonia pickettii 12J]
gi|226708672|sp|B2UAA5.1|TRUB_RALPJ RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|187725102|gb|ACD26267.1| tRNA pseudouridine synthase B [Ralstonia pickettii 12J]
Length = 318
Score = 169 bits (427), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 91/205 (44%), Positives = 128/205 (62%), Gaps = 3/205 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L++KP GW+S + +RL+ KK GH GTLDP+ATGLL +C G+ATK
Sbjct: 20 VLLLDKPIGWSSNDALIRAKRLLWAKKAGHTGTLDPLATGLLPLCFGEATKFSQDLLDAD 79
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y V RLG TST DA+ V+ P + E ++ A A F GEI QVPPM SA+K
Sbjct: 80 KTYETVVRLGIRTSTADAEGEVLSERPVS-VTPEQLQAAIARFVGEIDQVPPMHSALKKD 138
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERS-LEDRQ-NLIFRVTCSKGTYIRSLCADFG 488
G+ +Y+ AR G+++E + RR++I+ D+ + L+ + + RV+CSKGTYIR+L D G
Sbjct: 139 GKPLYEYARAGQTVERAARRVTIYAIDVLATDLQSAEPTVTLRVSCSKGTYIRTLGEDIG 198
Query: 489 KALGSCAHLTALRRDSIGQYSADDA 513
+ALG HL ALRR +G + D A
Sbjct: 199 EALGCGGHLVALRRTQVGNLTLDGA 223
>gi|379057944|ref|ZP_09848470.1| tRNA pseudouridine synthase B [Serinicoccus profundi MCCC 1A05965]
Length = 309
Score = 169 bits (427), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 93/226 (41%), Positives = 128/226 (56%), Gaps = 7/226 (3%)
Query: 297 STELPP-TWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVC 355
+T PP DG +++V+KP GWTS V + R L +KVGHAGTLDPMATG+L++
Sbjct: 5 TTHRPPFVGDG----LLVVDKPAGWTSHDVVARARWLCGTRKVGHAGTLDPMATGVLVLG 60
Query: 356 VGKATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRG 415
VG+ TKL+ G K Y+ RLG++T T DA+ V + +R A G
Sbjct: 61 VGRGTKLLTFLVGRDKAYTATIRLGQSTLTDDAEGEVTASSDASGVSGAQLRAAVHELTG 120
Query: 416 EIWQVPPMFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIE--RSLEDRQNLIFRVT 473
++ QVP SAIKVGG + Y + R GE ++L+ R + + +FD+E R +L V
Sbjct: 121 DLQQVPSAVSAIKVGGVRSYARVRSGEDVQLAARPVRVARFDVEDVRPGGAVVDLDVTVE 180
Query: 474 CSKGTYIRSLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKEL 519
S GTY+R+L D G ALG HLTALRR +G D A ++L
Sbjct: 181 VSSGTYVRALARDLGAALGVGGHLTALRRTRVGGLGLDVATSLEDL 226
>gi|259046776|ref|ZP_05737177.1| tRNA pseudouridine synthase B [Granulicatella adiacens ATCC 49175]
gi|259036544|gb|EEW37799.1| tRNA pseudouridine synthase B [Granulicatella adiacens ATCC 49175]
Length = 303
Score = 169 bits (427), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 92/214 (42%), Positives = 132/214 (61%), Gaps = 6/214 (2%)
Query: 316 KPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSG 375
K KG TSF K+R+++K KKVGH+GTLDP G+L +C+GKATK+V+ K Y G
Sbjct: 12 KEKGMTSFDCVYKVRKILKTKKVGHSGTLDPEVDGVLPICIGKATKVVENLHEANKVYQG 71
Query: 376 VFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEKM 434
LG +T T DA ++ P E +++I + F GEI Q+PPM+SA+KV G+++
Sbjct: 72 EITLGFSTETEDAHGNLVSTTPIETPFLNQEIDERMQEFIGEITQIPPMYSAVKVNGKRL 131
Query: 435 YDKARRGESIELSPRRISIFQF-DIERSL--EDR--QNLIFRVTCSKGTYIRSLCADFGK 489
Y+ AR GE +E R+ +IF F I + ED+ Q+ F V+CSKGTY+R+L D GK
Sbjct: 132 YEYARAGEEVERPSRKATIFDFRRISEPVYNEDKKTQSWKFEVSCSKGTYVRTLSVDLGK 191
Query: 490 ALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
+LG AH++ L R G + ADD ++L E +
Sbjct: 192 SLGVKAHMSQLTRVKSGPFHADDCITLEQLNERV 225
>gi|312867761|ref|ZP_07727967.1| tRNA pseudouridine synthase B [Streptococcus parasanguinis F0405]
gi|311096824|gb|EFQ55062.1| tRNA pseudouridine synthase B [Streptococcus parasanguinis F0405]
Length = 309
Score = 169 bits (427), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 95/238 (39%), Positives = 135/238 (56%), Gaps = 8/238 (3%)
Query: 293 IVSRSTELPPTWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLL 352
+V++ E DG ++ V K G TS V KLR+++ KK+GH GTLDP G+L
Sbjct: 1 MVTQELERANQMDG----IINVKKEAGMTSHDVVFKLRKILGTKKIGHGGTLDPDVVGVL 56
Query: 353 IVCVGKATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDE-DIRKAAA 411
+ VGKAT++V+ Q K Y G LG +T+T DA V++ P E D ++ + A
Sbjct: 57 PIAVGKATRMVEFMQDEGKVYEGEITLGFSTTTEDASGEVVEGTPVEAPLDAGEVDRMIA 116
Query: 412 SFRGEIWQVPPMFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLI-- 469
GEI QVPPM+SA+KV G K+Y+ AR GE +E R+++I+ F + L
Sbjct: 117 QMVGEIEQVPPMYSAVKVNGRKLYEYARAGEEVERPVRQVTIYDFTRTSEISYEGGLARF 176
Query: 470 -FRVTCSKGTYIRSLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAITKN 526
FRV CSKGTYIR+L D G+ LG AH++ L R S S +DA +E+ E + +
Sbjct: 177 RFRVKCSKGTYIRTLSVDLGQKLGYAAHMSHLTRTSAAGLSLEDALTLEEVAEKVAQG 234
>gi|297562522|ref|YP_003681496.1| tRNA pseudouridine synthase B [Nocardiopsis dassonvillei subsp.
dassonvillei DSM 43111]
gi|296846970|gb|ADH68990.1| tRNA pseudouridine synthase B [Nocardiopsis dassonvillei subsp.
dassonvillei DSM 43111]
Length = 295
Score = 169 bits (427), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 90/221 (40%), Positives = 124/221 (56%), Gaps = 6/221 (2%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP WTS V + R L + ++VGHAGTLDPMATG+L++ + K TKL+
Sbjct: 6 VVVVDKPADWTSHDVVARTRGLARTRRVGHAGTLDPMATGVLVLGIEKGTKLLGHLTLTE 65
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y RLG T+T DA+ + R + +E +R A G+I Q+PP SAIKV
Sbjct: 66 KVYEATIRLGLTTNTDDAEGEPLVRADASGVGEEAVRAAVGRLTGQIQQIPPQVSAIKVD 125
Query: 431 GEKMYDKARRGESIELSPRRISIFQF---DIERSLEDRQNLI---FRVTCSKGTYIRSLC 484
G++ Y AR G+ + L R +++ +F D+ R L+ + VTCS GTYIR+L
Sbjct: 126 GKRAYKSAREGKEVALKARTVTVAEFTVTDVRRVLDADGEFVDVDASVTCSSGTYIRALA 185
Query: 485 ADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAITK 525
D G LG HLTALRR +G Y A EL E T+
Sbjct: 186 RDMGADLGVGGHLTALRRTRVGPYDLSRARTLDELAEEFTQ 226
>gi|419861038|ref|ZP_14383678.1| tRNA pseudouridine synthase B [Corynebacterium diphtheriae bv.
intermedius str. NCTC 5011]
gi|387982722|gb|EIK56223.1| tRNA pseudouridine synthase B [Corynebacterium diphtheriae bv.
intermedius str. NCTC 5011]
Length = 300
Score = 169 bits (427), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 91/219 (41%), Positives = 128/219 (58%), Gaps = 11/219 (5%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP+G TS V K+RR +KVGHAGTLDPMATG+L++ + + TK +
Sbjct: 10 LVIVDKPEGMTSHDVVSKIRRTFSTQKVGHAGTLDPMATGVLVLGLERGTKFLAHMIAST 69
Query: 371 KGYSGVFRLGEATSTWDADSPVIQR---EPWEHIKDEDIRKAAASFRGEIWQVPPMFSAI 427
K Y+ RLG AT+T D + I + I + I A FRG I Q P SAI
Sbjct: 70 KSYAATIRLGAATTTDDREGETITSASPDQLAGITETKISDAVKQFRGSIMQRPAAVSAI 129
Query: 428 KVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIF-----RVTCSKGTYIRS 482
K+ G++ + + R GE +E+ R ++I ++DI LE R++ F V CS GTYIRS
Sbjct: 130 KIDGKRAHQRVREGEKVEIPARPVTISRYDI---LEIRRDAAFIDIDVEVDCSSGTYIRS 186
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
L D G+ LG HLTALRR +G ++ D+A ++LEE
Sbjct: 187 LARDLGEELGVGGHLTALRRTQVGPFTLDNAVTLEKLEE 225
>gi|429757375|ref|ZP_19289911.1| tRNA pseudouridine synthase B [Actinomyces sp. oral taxon 181 str.
F0379]
gi|429175045|gb|EKY16498.1| tRNA pseudouridine synthase B [Actinomyces sp. oral taxon 181 str.
F0379]
Length = 332
Score = 169 bits (427), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 91/231 (39%), Positives = 133/231 (57%), Gaps = 15/231 (6%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++V+KP+G TS V + RRL ++VGHAGTLDPMATG+L++ + KAT+L+
Sbjct: 12 LLIVDKPQGITSHDVVSRTRRLAHTRRVGHAGTLDPMATGVLVLGINKATRLLTWITDHS 71
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y R G T+T DA+ V + + + +E+I + FRG I QVP SAIKV
Sbjct: 72 KRYEAQVRFGVETTTEDAEGEVTSAKGCDGLDNEEIEAVLSHFRGTISQVPSAVSAIKVN 131
Query: 431 GEKMYDKARRGESIELSPRRISIFQFD---------IERSLEDRQ------NLIFRVTCS 475
G++ Y + R GE ++L PR + I + +E +LE + +L V CS
Sbjct: 132 GKRAYARVRAGEDVKLEPREVEISLLEAQGQPRSHRVEYALEGKSTHVNCVDLNLVVECS 191
Query: 476 KGTYIRSLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAITKN 526
GTYIR+L D G ALG AHL +LRR +G++S D A + L+EA ++
Sbjct: 192 AGTYIRALARDLGNALGCGAHLISLRRTRVGEFSIDCAHTLQSLDEAAAQS 242
>gi|415725155|ref|ZP_11470158.1| tRNA pseudouridine synthase B [Gardnerella vaginalis 00703C2mash]
gi|388061960|gb|EIK84596.1| tRNA pseudouridine synthase B [Gardnerella vaginalis 00703C2mash]
Length = 418
Score = 169 bits (427), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 96/231 (41%), Positives = 128/231 (55%), Gaps = 20/231 (8%)
Query: 307 PFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRY 366
P ++LV+KPKG TS V R L+ K+VGHAGTLDPMATGLLI+ G AT+L++
Sbjct: 13 PSSGILLVDKPKGVTSHDVVSFARGLLHTKRVGHAGTLDPMATGLLILGFGNATRLLNYL 72
Query: 367 QGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHI---------KDEDIRKAAA----SF 413
G K Y V RLGE+T+T DAD +I E+ DE +++ +F
Sbjct: 73 LGHNKTYEAVIRLGESTNTDDADGNIIASAKSENTILSSSNNANIDEILKELRVVIEKNF 132
Query: 414 RGEIWQVPPMFSAIKVGGEKMYDKARRGESIELSPRRISIF-------QFDIERSLEDRQ 466
G I Q P FSAIKV G + YD AR G+ + L PR + I+ F + S
Sbjct: 133 TGSIMQTPTSFSAIKVNGVRAYDLAREGKDVHLEPREVFIYDFSLLDAHFSVGVSGAKVI 192
Query: 467 NLIFRVTCSKGTYIRSLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFK 517
++ V+CS GTYIR+L D G+ LG HL +LRR IG +S +D+ K
Sbjct: 193 DVRASVSCSSGTYIRALARDLGRILGVGGHLVSLRRTRIGDFSIEDSRVLK 243
>gi|302874666|ref|YP_003843299.1| tRNA pseudouridine synthase B [Clostridium cellulovorans 743B]
gi|307690720|ref|ZP_07633166.1| tRNA pseudouridine synthase B [Clostridium cellulovorans 743B]
gi|302577523|gb|ADL51535.1| tRNA pseudouridine synthase B [Clostridium cellulovorans 743B]
Length = 288
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 86/210 (40%), Positives = 132/210 (62%), Gaps = 4/210 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ V KP+G TSF V ++++ KK+GH GTLDP+ATG+L +C+G+ATKLVD
Sbjct: 4 IINVYKPQGITSFDVVRSVKKITGQKKIGHTGTLDPLATGVLPICIGRATKLVDYIMNGR 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y +LG T T+D + V++ EH+ + ++++A SF GEI QVPPM+SA+KV
Sbjct: 64 KTYIATLKLGVETDTYDREGEVLKTLATEHLSEAEVKEAINSFIGEIKQVPPMYSALKVQ 123
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQ-NLIFRVTCSKGTYIRSLCADFGK 489
G+++Y+ AR G+ +E + R I+I+ I LE + ++ F V CSKGTYIRSLC D G+
Sbjct: 124 GKRLYELAREGKEVERNERSITIYDIKI---LEIKVPDIKFEVVCSKGTYIRSLCFDIGE 180
Query: 490 ALGSCAHLTALRRDSIGQYSADDAWEFKEL 519
L + L R + + +++ +EL
Sbjct: 181 KLKCGGAMWDLERTASSSFKKENSVTLEEL 210
>gi|395774938|ref|ZP_10455453.1| tRNA pseudouridine synthase B [Streptomyces acidiscabies 84-104]
Length = 301
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 93/221 (42%), Positives = 129/221 (58%), Gaps = 7/221 (3%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G+TS V K+R + + ++VGHAGTLDPMATG+L++ V +ATKL+
Sbjct: 11 LVIVDKPSGFTSHDVVAKMRGIARTRRVGHAGTLDPMATGVLVLGVERATKLLGHLALTE 70
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y G RLG+ T T DA+ + + E + A G+I QVP SAIK+
Sbjct: 71 KEYLGTVRLGQTTVTDDAEGEITASADASAVTREQVDAGVAKLTGDIMQVPSKVSAIKID 130
Query: 431 GEKMYDKARRGESIEL--SPRRISIFQ-FDIERSL-EDRQ---NLIFRVTCSKGTYIRSL 483
G + Y +AR GE E+ P +IS FQ +D+ ++ ED +L+ V CS GTYIR+L
Sbjct: 131 GVRSYKRARDGEDFEIPARPVKISSFQVYDVRAAVAEDGTPVLDLVVSVVCSSGTYIRAL 190
Query: 484 CADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAIT 524
D G LG HLTALRR +G Y D A +L+E +T
Sbjct: 191 ARDLGTDLGVGGHLTALRRTRVGPYKLDSARTLDQLQEELT 231
>gi|385793431|ref|YP_005826407.1| hypothetical protein [Francisella cf. novicida Fx1]
gi|332678756|gb|AEE87885.1| tRNA pseudouridine synthase B [Francisella cf. novicida Fx1]
Length = 302
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 85/212 (40%), Positives = 127/212 (59%), Gaps = 3/212 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V++NK K +S V +L+ L +K GH GTLDPMATG+L +C G+ATK+
Sbjct: 11 VVVINKAKDISSNKVLQQLKYLFNAQKAGHTGTLDPMATGVLPICFGRATKIAQYLLDAD 70
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREP-WEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y RLG T + DA+ +I + P + E + A FRG++ Q+PPM+SA+K
Sbjct: 71 KEYIATIRLGIETDSGDAEGEIIAKSPNIPELSAEYLETVLAKFRGDVVQIPPMYSALKY 130
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGK 489
G+ +Y AR G+++E+ R I I++ +++ D +L RV CSKGTYIRSL D GK
Sbjct: 131 NGQPLYKLAREGKTVEVKSRNIKIYELELQEF--DIDSLKIRVKCSKGTYIRSLAIDIGK 188
Query: 490 ALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
ALG HL AL+R G + +A+ ++L++
Sbjct: 189 ALGCGGHLIALQRTQSGPFKLSEAFRLEQLKD 220
>gi|423070135|ref|ZP_17058911.1| tRNA pseudouridine synthase B [Streptococcus intermedius F0413]
gi|355366456|gb|EHG14174.1| tRNA pseudouridine synthase B [Streptococcus intermedius F0413]
Length = 292
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 95/224 (42%), Positives = 132/224 (58%), Gaps = 8/224 (3%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ + K G TS KLR+++K KK+GH GTLDP G+L + VGKAT+LV+ Q
Sbjct: 4 IINLRKEAGMTSHDAVFKLRKILKTKKIGHGGTLDPDVVGVLPIAVGKATRLVEFMQEEG 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDED-IRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA +++R P + +E I +A S G I Q+PPM+SA+KV
Sbjct: 64 KVYEGEITLGCSTTTEDASGDILERTPVTELLEEALIDEAMESMTGVIRQIPPMYSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIER----SLEDRQ-NLIFRVTCSKGTYIRSLC 484
G K+Y+ AR G+ +E R+++I+ F ER S ED Q FRV CSKG YIR+L
Sbjct: 124 NGRKLYEYARAGQEVERPERQVTIYSF--ERTSPVSYEDEQARFRFRVKCSKGAYIRTLS 181
Query: 485 ADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAITKNYF 528
D G LG +H++ L R S S DDA F E+ E + + F
Sbjct: 182 VDLGAKLGFASHMSQLTRTSSAGMSLDDALTFDEIAERVAVDDF 225
>gi|340348931|ref|ZP_08671956.1| tRNA pseudouridine synthase B [Prevotella nigrescens ATCC 33563]
gi|339612792|gb|EGQ17592.1| tRNA pseudouridine synthase B [Prevotella nigrescens ATCC 33563]
Length = 235
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 86/218 (39%), Positives = 126/218 (57%), Gaps = 5/218 (2%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLV-KVK----KVGHAGTLDPMATGLLIVCVGKATKLV 363
G ++ ++KP G TSF +R L K++ K+GHAGTLDP+ATG+LI+ G+ TK +
Sbjct: 6 GVLIPIDKPYGITSFKALAHVRYLCSKIQGGRVKIGHAGTLDPLATGVLILATGRMTKQI 65
Query: 364 DRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPM 423
+ Q K Y +LG T ++D + + P EHI E I A F G I Q+PP
Sbjct: 66 ETLQTHTKEYVATMQLGATTPSYDMEHEENETFPTEHITRELIETALQQFIGNIEQIPPT 125
Query: 424 FSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSL 483
+SA+KV G++ +D R GE I L P++I I + +I R ++ L RV C KGTYIR+L
Sbjct: 126 YSAVKVNGQRAFDYRRNGEDIILKPKKIRIDEIEITRFDAEKMQLTLRVVCGKGTYIRAL 185
Query: 484 CADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
D G+A+ S A+L ALRR +G ++ + +E
Sbjct: 186 ARDLGRAINSGAYLVALRRTRVGDIKVEECINYDHFKE 223
>gi|384265250|ref|YP_005420957.1| tRNA pseudouridine synthase B [Bacillus amyloliquefaciens subsp.
plantarum YAU B9601-Y2]
gi|387898248|ref|YP_006328544.1| tRNA pseudouridine synthase B [Bacillus amyloliquefaciens Y2]
gi|380498603|emb|CCG49641.1| tRNA pseudouridine synthase B [Bacillus amyloliquefaciens subsp.
plantarum YAU B9601-Y2]
gi|387172358|gb|AFJ61819.1| tRNA pseudouridine synthase B [Bacillus amyloliquefaciens Y2]
Length = 309
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 89/218 (40%), Positives = 132/218 (60%), Gaps = 4/218 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L++KP G TS K+R+L+K KKVGH GTLDP +G+L +CVG+ATK+V+
Sbjct: 5 VLLLHKPVGMTSHDCVMKIRKLLKTKKVGHTGTLDPEVSGVLPICVGRATKIVEYVTDKS 64
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPW-EHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y LG +TST D + +P E +K+ DI+ +G QVPPM+SA+KV
Sbjct: 65 KTYDAEITLGFSTSTEDQTGETVSVKPVKEPLKEADIKAVLDELKGPQEQVPPMYSAVKV 124
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIERSL---EDRQNLIFRVTCSKGTYIRSLCAD 486
G+K+Y+ AR G +E R I+I + + ED + F VTCSKGTY+R+L
Sbjct: 125 NGKKLYEYARAGIEVERPKRNITIEDIALTSPVTYNEDTASFRFTVTCSKGTYVRTLAVT 184
Query: 487 FGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAIT 524
G+ LG AH++ L R + G +S D+ + F+ELE+ ++
Sbjct: 185 IGEKLGYPAHMSHLIRTASGDFSLDECFTFEELEQQVS 222
>gi|300778900|ref|ZP_07088758.1| tRNA pseudouridine synthase B [Chryseobacterium gleum ATCC 35910]
gi|300504410|gb|EFK35550.1| tRNA pseudouridine synthase B [Chryseobacterium gleum ATCC 35910]
Length = 232
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 94/213 (44%), Positives = 126/213 (59%), Gaps = 11/213 (5%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRR-------LVKVKKVGHAGTLDPMATGLLIVCVGKATK 361
G + L++KP WTSF K++ L K K+GHAGTLDP ATGLLIVC GK TK
Sbjct: 9 GYIFLLDKPLDWTSFQAVNKMKYKLKREFDLPKKFKIGHAGTLDPRATGLLIVCCGKFTK 68
Query: 362 LVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVP 421
+ Q K Y ++G T ++D + P I + HI +E +++ F GEI Q P
Sbjct: 69 KIPEIQDAPKEYWTEIKIGVQTESYDTEKPEILHQDISHITEEQVKEVLEKFVGEIEQKP 128
Query: 422 PMFSAIKVGGEKMYDKARRGESIELSPRRISIFQF-DIERSLEDRQNLIFRVTCSKGTYI 480
P++SAIK+ GE+ Y+ AR GE +E+ R+ +I DI+ D + F V CSKGTYI
Sbjct: 129 PVYSAIKIDGERAYNLARAGEEVEMKARKTTIHYIKDIKI---DFPLVSFMVGCSKGTYI 185
Query: 481 RSLCADFGKALGSCAHLTALRRDSIGQYSADDA 513
RSL D G+ LG A+LT LRR IG Y+ +DA
Sbjct: 186 RSLAHDIGQELGVGAYLTQLRRTKIGDYAIEDA 218
>gi|425745947|ref|ZP_18863981.1| tRNA pseudouridine(55) synthase [Acinetobacter baumannii WC-323]
gi|425487093|gb|EKU53452.1| tRNA pseudouridine(55) synthase [Acinetobacter baumannii WC-323]
Length = 297
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 86/210 (40%), Positives = 122/210 (58%), Gaps = 2/210 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+ L+NKP G +S + K+RRL +K GH G LDP+ATGLL +C+G+ATK
Sbjct: 12 VFLLNKPLGLSSNSALQKVRRLFNAQKAGHTGALDPLATGLLPICLGEATKFSHYLLDST 71
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y +LG+ T+T D + ++Q+ + E I + A FRG+I QVPPM+SA+K
Sbjct: 72 KRYQTTVKLGQTTATGDVEGEILQQREVPALTAEGIEQVLAQFRGDIQQVPPMYSALKRE 131
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKA 490
G +Y+ AR+G IE R ++I+ + ED +L VTCSKGTYIR L D G+A
Sbjct: 132 GRPLYELARKGIEIEREARPVTIYDLTLVDFTED--SLTLDVTCSKGTYIRVLGEDIGEA 189
Query: 491 LGSCAHLTALRRDSIGQYSADDAWEFKELE 520
LG HLT L R G + + ++ + LE
Sbjct: 190 LGCGGHLTKLHRTQTGHFEINPSYTIEYLE 219
>gi|152976176|ref|YP_001375693.1| tRNA pseudouridine synthase B [Bacillus cytotoxicus NVH 391-98]
gi|189030158|sp|A7GRE0.1|TRUB_BACCN RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|152024928|gb|ABS22698.1| tRNA pseudouridine synthase B [Bacillus cytotoxicus NVH 391-98]
Length = 307
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 88/219 (40%), Positives = 135/219 (61%), Gaps = 11/219 (5%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+VL++KPKG TS KLR++++ K++GH GTLDP TG+L +CVG+ATK+
Sbjct: 4 VVLLHKPKGMTSHDCVFKLRKILREKRIGHTGTLDPDVTGVLPICVGRATKIAQFLTSET 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V++++ I ++I A G + QVPPM+SA+KV
Sbjct: 64 KTYEGEVTLGFSTTTEDASGEVVEKQDVNRTITRKEIEAVLAELTGTLEQVPPMYSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQ-------NLIFRVTCSKGTYIRS 482
G+K+Y+ AR G+ ++ R I+I +F + L++R+ + FRVTCSKGTY+R+
Sbjct: 124 NGKKLYEYARAGQEVKRPVRIITIHEFTL---LDNRETFEGANISFRFRVTCSKGTYVRT 180
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
L G+ LG AH++ L R + G++ D F+E+EE
Sbjct: 181 LAVMIGEKLGFPAHMSDLVRTASGEFQLHDCVSFEEIEE 219
>gi|256379825|ref|YP_003103485.1| tRNA pseudouridine synthase B [Actinosynnema mirum DSM 43827]
gi|255924128|gb|ACU39639.1| tRNA pseudouridine synthase B [Actinosynnema mirum DSM 43827]
Length = 299
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 88/213 (41%), Positives = 124/213 (58%), Gaps = 2/213 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G TS V K+RR++ +KVGHAGTLDPMATG+L++ V +ATKL+
Sbjct: 13 LVVVDKPDGMTSHDVVAKVRRILGTRKVGHAGTLDPMATGVLVLGVERATKLLGHLALDS 72
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y RLG +T+T DA+ V+ + ++ IR A G I QVP SA+KV
Sbjct: 73 KAYLSTIRLGASTTTDDAEGEVLSSADSTAVPEDAIRAGVAKLTGAIQQVPSAVSAVKVD 132
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIE--RSLEDRQNLIFRVTCSKGTYIRSLCADFG 488
G++ Y + R GE +EL PR +++ +FD+ R D L V CS GTY+R+L D G
Sbjct: 133 GKRAYARVRAGEEVELPPRPVTVHRFDVLSIRREADATELDVMVECSSGTYVRALARDLG 192
Query: 489 KALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
LG HL ALRR +G + A ++L +
Sbjct: 193 VDLGVGGHLAALRRTRVGPFDLRVAKTLEQLAD 225
>gi|300726828|ref|ZP_07060258.1| tRNA pseudouridine synthase B [Prevotella bryantii B14]
gi|299775941|gb|EFI72521.1| tRNA pseudouridine synthase B [Prevotella bryantii B14]
Length = 235
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 87/218 (39%), Positives = 125/218 (57%), Gaps = 5/218 (2%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVK-----KVGHAGTLDPMATGLLIVCVGKATKLV 363
G ++ ++KP +SF +R L+ K K+GHAGTLDP+ATG+LI+C GKATK +
Sbjct: 6 GEILAIDKPYRISSFGALAHVRYLLSRKLGRKIKIGHAGTLDPLATGILILCTGKATKKI 65
Query: 364 DRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPM 423
+ Q K Y +LG T+++D + V P HI E + + F G+I QVPP
Sbjct: 66 ESLQYHTKEYVAGLQLGATTASYDKEHTVNYTYPTHHITRELVLQTIQQFIGDIQQVPPT 125
Query: 424 FSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSL 483
+SA+KVGGE+ Y R GE ++L P+ + I + ++ + RV C KGTYIRSL
Sbjct: 126 YSAVKVGGERSYALRRAGEEVKLQPKTVHIEEIELLDFDPTTMQMTIRVVCGKGTYIRSL 185
Query: 484 CADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
D G+ALGS A LT+LRR +G+ + D + E
Sbjct: 186 ARDLGRALGSGAFLTSLRRTRVGKVTIQDCVNYDHFAE 223
>gi|383827928|ref|ZP_09983017.1| tRNA pseudouridine 55 synthase [Saccharomonospora xinjiangensis
XJ-54]
gi|383460581|gb|EID52671.1| tRNA pseudouridine 55 synthase [Saccharomonospora xinjiangensis
XJ-54]
Length = 298
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 88/215 (40%), Positives = 127/215 (59%), Gaps = 5/215 (2%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++++KP G TS V K+RR ++ +KVGHAGTLDPMATG+L++ + +ATKL+
Sbjct: 10 LLIIDKPGGMTSHDVVAKVRRFLRTRKVGHAGTLDPMATGVLVLGIERATKLLGHLALDR 69
Query: 371 KGYSGVFRLGEATSTWDADSPVIQR---EPWEHIKDEDIRKAAASFRGEIWQVPPMFSAI 427
K Y LG AT+T DA+ VI R + + D +I A+ G+I Q P SAI
Sbjct: 70 KTYLATIALGAATTTDDAEGEVISRADGQAVAAVSDAEIEAGIAALTGDILQKPSAVSAI 129
Query: 428 KVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVT--CSKGTYIRSLCA 485
KVGG++ Y R GE ++L R +S+++FD+ + D +L V CS GTY+R+L
Sbjct: 130 KVGGKRAYAMVRAGEDVDLPARPVSVYRFDLRATRRDAGSLELDVMVDCSSGTYVRALAR 189
Query: 486 DFGKALGSCAHLTALRRDSIGQYSADDAWEFKELE 520
D G ALG HL ALRR S G ++ A ++E
Sbjct: 190 DLGAALGVGGHLAALRRTSAGPFTLAKARTLDDVE 224
>gi|377564060|ref|ZP_09793387.1| tRNA pseudouridine synthase B [Gordonia sputi NBRC 100414]
gi|377528693|dbj|GAB38552.1| tRNA pseudouridine synthase B [Gordonia sputi NBRC 100414]
Length = 299
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 92/213 (43%), Positives = 125/213 (58%), Gaps = 2/213 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+K +G TS V + R+L ++VGHAGTLDPMATG+L+V V +ATKL+
Sbjct: 11 LVIVDKNEGITSHDVVSRCRKLFNTRRVGHAGTLDPMATGVLVVGVERATKLLGLLALTT 70
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y+ RLG AT + D VI I DE I A+ G+I QVP SAIKV
Sbjct: 71 KSYTATIRLGAATDSDDRMGEVISSADASSITDEQIAATVATLTGDIEQVPAKVSAIKVD 130
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDI--ERSLEDRQNLIFRVTCSKGTYIRSLCADFG 488
G + + AR GE EL+ R +++ +FD+ R + +L V CS GTYIRSL D G
Sbjct: 131 GRRAHALARTGEEFELAARPVTVSRFDVLARRDEGEFVDLDVVVDCSAGTYIRSLARDLG 190
Query: 489 KALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
ALG HLTALRR ++G ++ + A ++L E
Sbjct: 191 AALGVGGHLTALRRTAVGPFTLEHARTLEQLAE 223
>gi|374370119|ref|ZP_09628130.1| tRNA pseudouridine synthase B [Cupriavidus basilensis OR16]
gi|373098351|gb|EHP39461.1| tRNA pseudouridine synthase B [Cupriavidus basilensis OR16]
Length = 315
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 90/212 (42%), Positives = 127/212 (59%), Gaps = 2/212 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L++KP G +S + +R+++ K GH GTLDP+ATGLL +C G+ATK
Sbjct: 20 VLLLDKPLGLSSNDALVRAKRMLRALKAGHTGTLDPLATGLLPLCFGEATKFSQDLLEAD 79
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y RLG T+T DA+ VI P D +R A + F GEI QVPPM SA+K
Sbjct: 80 KTYEAAVRLGLKTATGDAEGEVIAERPVTCDIDA-LRAAMSRFAGEIEQVPPMHSALKKD 138
Query: 431 GEKMYDKARRGESIELSPRRISIFQFD-IERSLEDRQNLIFRVTCSKGTYIRSLCADFGK 489
G +Y+ AR G+++E + RR++I + ++ L RVTCSKGTYIR+L D G+
Sbjct: 139 GRPLYEYARAGQTVERAARRVTIHEIALLDCGLPQAPTFSMRVTCSKGTYIRTLAEDIGE 198
Query: 490 ALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
ALG AHLT LRR ++G S D A +++E+
Sbjct: 199 ALGCGAHLTGLRRTAVGDLSLDGAVTLEQIEQ 230
>gi|365853658|ref|ZP_09393925.1| tRNA pseudouridine synthase B [Lactobacillus parafarraginis F0439]
gi|363712283|gb|EHL95982.1| tRNA pseudouridine synthase B [Lactobacillus parafarraginis F0439]
Length = 303
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 86/222 (38%), Positives = 129/222 (58%), Gaps = 6/222 (2%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ + K +G TS +LR+++ K+GH GTLDP G+L VC+G+ATK+ + G
Sbjct: 4 VIALYKERGMTSHDCISRLRKILHTSKIGHTGTLDPNVDGVLPVCIGQATKISEILMGSG 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG A T D D +I ++P E + D++I +A A G+I Q PPM+SA+KV
Sbjct: 64 KVYQGEITLGVAYDTEDLDGKIIAQQPVETPLTDQEIDRALAQLTGDIMQTPPMYSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFD-----IERSLEDRQNLIFRVTCSKGTYIRSLC 484
G K+Y+ ARRGE+I PR+I I +F+ I +Q + F V CSKGTY+R+L
Sbjct: 124 NGHKLYEYARRGETIHRDPRQIHISRFNQIKPAIYNPTAQQQTIFFEVACSKGTYVRTLA 183
Query: 485 ADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAITKN 526
DFGK L A +++L R G + K++ +A+ +
Sbjct: 184 VDFGKLLNLPAVMSSLTRIQSGGFQLSQCVTLKQVADAVADH 225
>gi|387818637|ref|YP_005678984.1| tRNA pseudouridine synthase B [Clostridium botulinum H04402 065]
gi|322806681|emb|CBZ04250.1| tRNA pseudouridine synthase B [Clostridium botulinum H04402 065]
Length = 289
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 93/215 (43%), Positives = 129/215 (60%), Gaps = 3/215 (1%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
V KPKG TSF V +R++ K+KKVGH GTLDP+A+G+L VC+GKATK+VD K Y
Sbjct: 7 VLKPKGITSFDVVRDIRKIAKIKKVGHTGTLDPLASGVLPVCIGKATKIVDYIMEGTKTY 66
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEK 433
+LG T T+D + V++ + + E + + + G+I QVPPM+SA+K+ G+K
Sbjct: 67 RVEMKLGTTTDTYDREGTVLEEKEIDLTPIE-VEEIIKKYIGDIDQVPPMYSALKINGQK 125
Query: 434 MYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKALGS 493
+YD AR+G IE R+I I+ I D +IF V CSKGTYIRSLC D GK L S
Sbjct: 126 LYDLARKGIEIEREARKIHIYDICILSI--DLPYVIFDVKCSKGTYIRSLCFDIGKDLDS 183
Query: 494 CAHLTALRRDSIGQYSADDAWEFKELEEAITKNYF 528
A + L+R ++ +A + + L E K Y
Sbjct: 184 GAVMWNLQRLEASPFNIKEAIKLENLNEKNIKQYI 218
>gi|403745565|ref|ZP_10954360.1| tRNA pseudouridine synthase B [Alicyclobacillus hesperidum
URH17-3-68]
gi|403121283|gb|EJY55597.1| tRNA pseudouridine synthase B [Alicyclobacillus hesperidum
URH17-3-68]
Length = 304
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 86/205 (41%), Positives = 126/205 (61%), Gaps = 2/205 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++LV+KP G TS V K+R + +KVGHAGTLDP A+GLL++CVG AT+L++ +
Sbjct: 8 VLLVDKPVGPTSHDVVAKVRHKLGTRKVGHAGTLDPGASGLLMICVGNATRLLEYFTSAD 67
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y+G G T T DA V ++ H+ D+RKAA +F G Q P +SA+ +
Sbjct: 68 KSYTGTVVFGIGTDTDDAAGSVTRQASAAHLTFADLRKAAEAFLGVTMQTVPAYSAVHID 127
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIE--RSLEDRQNLIFRVTCSKGTYIRSLCADFG 488
G + Y+ AR+GE++ L R+I + F++ R+ + + F VTCSKGTY+R+LC D G
Sbjct: 128 GVRAYELARKGETVALPERKIHVSHFELADFRAEGECCSASFSVTCSKGTYVRALCRDLG 187
Query: 489 KALGSCAHLTALRRDSIGQYSADDA 513
+ LG AH+ LRR ++G DA
Sbjct: 188 ERLGVPAHMATLRRTAVGSARLADA 212
>gi|385264793|ref|ZP_10042880.1| tRNA pseudouridine synthase B [Bacillus sp. 5B6]
gi|385149289|gb|EIF13226.1| tRNA pseudouridine synthase B [Bacillus sp. 5B6]
Length = 309
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 89/218 (40%), Positives = 132/218 (60%), Gaps = 4/218 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L++KP G TS K+R+L+K KKVGH GTLDP +G+L +CVG+ATK+V+
Sbjct: 5 VLLLHKPVGMTSHDCVMKIRKLLKTKKVGHTGTLDPEVSGVLPICVGRATKIVEYVTDKS 64
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPW-EHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y LG +TST D + +P E +K+ DI+ +G QVPPM+SA+KV
Sbjct: 65 KTYDAEITLGFSTSTEDQTGETVSVKPVKEPLKEADIKAVLDELKGPQEQVPPMYSAVKV 124
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIERSL---EDRQNLIFRVTCSKGTYIRSLCAD 486
G+K+Y+ AR G +E R I+I + + ED + F VTCSKGTY+R+L
Sbjct: 125 NGKKLYEYARAGIEVERPKRNITIEDIALTSPVTYNEDTASFRFTVTCSKGTYVRTLAVT 184
Query: 487 FGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAIT 524
G+ LG AH++ L R + G +S D+ + F+ELE+ ++
Sbjct: 185 IGEKLGYPAHMSHLIRTASGDFSLDECFTFEELEQQVS 222
>gi|72382757|ref|YP_292112.1| tRNA pseudouridine synthase B [Prochlorococcus marinus str. NATL2A]
gi|91208091|sp|Q46JB9.1|TRUB_PROMT RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|72002607|gb|AAZ58409.1| tRNA pseudouridine synthase B [Prochlorococcus marinus str. NATL2A]
Length = 314
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 81/196 (41%), Positives = 122/196 (62%), Gaps = 2/196 (1%)
Query: 307 PFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRY 366
PFG V+++KP G TS +LR++ +KK+GH+GTLDP TG+L + +G AT+L+
Sbjct: 4 PFG-FVVIDKPSGLTSHDCVNRLRKVFGIKKIGHSGTLDPAVTGVLPIAIGDATRLISYL 62
Query: 367 QGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSA 426
QG K Y G+ +LG T+T D +I+ + W I I +FRGEI Q PP+FS+
Sbjct: 63 QGS-KAYRGIIQLGATTNTDDMQGEIIESKAWPLITQNYINYLLENFRGEILQKPPIFSS 121
Query: 427 IKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCAD 486
+ + GE+ Y KAR+GE +L P++++I + ++ +D+ L+ V CS GTYIRSL D
Sbjct: 122 VHIKGERAYKKARKGEKFDLIPKKVTINKLNLISWSQDKGELLVDVDCSTGTYIRSLARD 181
Query: 487 FGKALGSCAHLTALRR 502
G +G +L +LRR
Sbjct: 182 IGDKIGCGGYLKSLRR 197
>gi|188994434|ref|YP_001928686.1| tRNA pseudouridine synthase B [Porphyromonas gingivalis ATCC 33277]
gi|188594114|dbj|BAG33089.1| putative tRNA pseudouridine synthase B [Porphyromonas gingivalis
ATCC 33277]
Length = 258
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 91/220 (41%), Positives = 129/220 (58%), Gaps = 10/220 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR----RLVKVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G ++ +KP WTSF + K R R + +KK VGHAGTLDP+A+G++I+C G+ATK
Sbjct: 13 GEVLYFDKPLTWTSFDLVNKFRYRACRRMGIKKLRVGHAGTLDPLASGVMILCTGRATKQ 72
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
+D Q K Y RLG TS++D ++ P+EHI + + F G I QVPP
Sbjct: 73 IDVLQAGTKEYIATIRLGATTSSFDKETEPDAFFPYEHITRQSVLDILPRFTGTIEQVPP 132
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLI-FRVTCSKGTYIR 481
+FSA++V G++ YD AR+G+ +E+ R + I + ++ LE LI R+ C KGTYIR
Sbjct: 133 IFSAVRVNGKRAYDLARKGKEVEMKTRTLQIDEIEL---LEYALPLITLRIVCGKGTYIR 189
Query: 482 SLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
+L D AL S HL ALRR +G +D ELE+
Sbjct: 190 ALARDIATALESGGHLEALRRTRVGNARIEDCLSMDELEQ 229
>gi|154686083|ref|YP_001421244.1| tRNA pseudouridine synthase B [Bacillus amyloliquefaciens FZB42]
gi|189030156|sp|A7Z4T7.1|TRUB_BACA2 RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|154351934|gb|ABS74013.1| TruB [Bacillus amyloliquefaciens FZB42]
Length = 309
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 89/218 (40%), Positives = 132/218 (60%), Gaps = 4/218 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L++KP G TS K+R+L+K KKVGH GTLDP +G+L +CVG+ATK+V+
Sbjct: 5 VLLLHKPVGMTSHDCVMKIRKLLKTKKVGHTGTLDPEVSGVLPICVGRATKIVEYVTDKS 64
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPW-EHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y LG +TST D + +P E +K+ DI+ +G QVPPM+SA+KV
Sbjct: 65 KTYDAEITLGFSTSTEDQTGETVSVKPVKEPLKEADIKAVLDELKGPQEQVPPMYSAVKV 124
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIERSL---EDRQNLIFRVTCSKGTYIRSLCAD 486
G+K+Y+ AR G +E R I+I + + ED + F VTCSKGTY+R+L
Sbjct: 125 NGKKLYEYARAGIEVERPKRNITIEDIALTSPVTYNEDTASFRFTVTCSKGTYVRTLAVT 184
Query: 487 FGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAIT 524
G+ LG AH++ L R + G +S D+ + F+ELE+ ++
Sbjct: 185 IGEKLGYPAHMSHLIRTASGDFSLDECFTFEELEQQVS 222
>gi|443673407|ref|ZP_21138473.1| tRNA pseudouridine synthase B [Rhodococcus sp. AW25M09]
gi|443414038|emb|CCQ16811.1| tRNA pseudouridine synthase B [Rhodococcus sp. AW25M09]
Length = 310
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 86/217 (39%), Positives = 130/217 (59%), Gaps = 6/217 (2%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++V+K G TS V R+L++ +KVGHAGTLDPMATG+L++ V +ATK++
Sbjct: 16 LLVVDKGPGVTSHDVVASCRKLLRTRKVGHAGTLDPMATGVLVLGVERATKMLGLLSLTT 75
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y+ RLG +T+T DA+ V+ H+ D DI A + G+I QVP SAIKV
Sbjct: 76 KSYTATVRLGRSTTTDDAEGDVLADTSAAHVSDSDIAIAVSGLTGDIEQVPARVSAIKVD 135
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDI--ERSLEDRQ----NLIFRVTCSKGTYIRSLC 484
G++ + +R GE L+ R++++ +FD+ R++ D + +L V C+ GTY+R+L
Sbjct: 136 GQRAHKLSRAGEDFTLAARKVTVTRFDVTARRNVVDLESSFVDLDVEVDCTSGTYVRALA 195
Query: 485 ADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
D G ALG HLT LRR +G ++ + A EL E
Sbjct: 196 RDLGAALGVGGHLTVLRRTRVGPFTLEHARTLDELAE 232
>gi|401683152|ref|ZP_10815041.1| tRNA pseudouridine(55) synthase [Streptococcus sp. AS14]
gi|400183834|gb|EJO18085.1| tRNA pseudouridine(55) synthase [Streptococcus sp. AS14]
Length = 292
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 95/224 (42%), Positives = 132/224 (58%), Gaps = 8/224 (3%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ + K G TS KLR+++K KK+GH GTLDP G+L + VGKAT+LV+ Q
Sbjct: 4 IINLRKEAGMTSHDAVFKLRKILKNKKIGHGGTLDPDVVGVLPIAVGKATRLVEFMQEEG 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDED-IRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA ++ R P + +E I +A S GEI Q+PPM+SA+KV
Sbjct: 64 KVYEGEITLGCSTTTEDASGDILDRTPVTELLEEAFIDEAMESMTGEIRQIPPMYSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIER----SLEDRQ-NLIFRVTCSKGTYIRSLC 484
G K+Y+ AR G+ +E R+++I+ F ER S ED Q FRV CSKGTY+R+L
Sbjct: 124 NGRKLYEYARAGQEVERPERQVTIYSF--ERTSPISYEDEQARFRFRVKCSKGTYVRTLS 181
Query: 485 ADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAITKNYF 528
D G LG +H++ L R S S DDA E+ E + + F
Sbjct: 182 VDLGAKLGFSSHMSQLTRTSSAGMSLDDALTLDEIAERVAVDDF 225
>gi|400536900|ref|ZP_10800434.1| tRNA pseudouridine synthase B [Mycobacterium colombiense CECT 3035]
gi|400329913|gb|EJO87412.1| tRNA pseudouridine synthase B [Mycobacterium colombiense CECT 3035]
Length = 279
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 89/204 (43%), Positives = 125/204 (61%), Gaps = 2/204 (0%)
Query: 320 WTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSGVFRL 379
TS V G+ RR+ ++VGHAGTLDPMATG+L++ V +ATK++ K Y+ RL
Sbjct: 1 MTSHDVVGRCRRIFSTRRVGHAGTLDPMATGVLVIGVERATKILGLLTATAKSYTATIRL 60
Query: 380 GEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEKMYDKAR 439
G++TST DA+ +++ H+ E + A RG+I QVP SAIKV G++ Y AR
Sbjct: 61 GQSTSTDDAEGELVRSVSARHLTGEAVESAMGGLRGDIEQVPSTVSAIKVDGKRAYRLAR 120
Query: 440 RGESIELSPRRISIFQFDIE--RSLEDRQNLIFRVTCSKGTYIRSLCADFGKALGSCAHL 497
G+++EL R + I +F++ R +D +L V CS GTYIR+L D G ALG HL
Sbjct: 121 EGQTVELKARPVRIDRFEVRDIRYRDDVVDLDVEVDCSSGTYIRALARDLGDALGVGGHL 180
Query: 498 TALRRDSIGQYSADDAWEFKELEE 521
TALRR S+G++ D A + EL E
Sbjct: 181 TALRRTSVGRFGLDQAHQLDELAE 204
>gi|302670333|ref|YP_003830293.1| tRNA pseudouridine synthase B [Butyrivibrio proteoclasticus B316]
gi|302394806|gb|ADL33711.1| tRNA pseudouridine synthase B TruB [Butyrivibrio proteoclasticus
B316]
Length = 319
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 87/216 (40%), Positives = 126/216 (58%), Gaps = 3/216 (1%)
Query: 308 FGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQ 367
+ ++ + K G+TS V KLR ++ KK+GH GTLDP ATG+L+VC+G TKLV+
Sbjct: 4 YNGLINIYKETGFTSNDVVAKLRGILHQKKIGHTGTLDPDATGVLVVCLGTGTKLVEMLT 63
Query: 368 GMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAI 427
K Y V +LG T T D V++ E H+ + +A +F GE Q+PPM+SAI
Sbjct: 64 DHDKEYIAVCKLGVTTDTQDMSGTVLE-EADVHVTRAQLHEAVQAFVGEYDQIPPMYSAI 122
Query: 428 KVGGEKMYDKARRGESIELSPRRISIFQFDI--ERSLEDRQNLIFRVTCSKGTYIRSLCA 485
K G+K+Y+ AR G +E PRR++I I + +L+ + V CSKGTYIR+LC
Sbjct: 123 KQNGKKLYELAREGIEVERKPRRVNISAITILDDSNLDKDNTFVMEVKCSKGTYIRTLCH 182
Query: 486 DFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
D G LG A + L R +G ++ D A + ++EE
Sbjct: 183 DIGLRLGCGAAMQNLMRTRVGAFALDSAVKLSQVEE 218
>gi|452855613|ref|YP_007497296.1| tRNA pseudouridine 55 synthase [Bacillus amyloliquefaciens subsp.
plantarum UCMB5036]
gi|452079873|emb|CCP21631.1| tRNA pseudouridine 55 synthase [Bacillus amyloliquefaciens subsp.
plantarum UCMB5036]
Length = 309
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 89/218 (40%), Positives = 132/218 (60%), Gaps = 4/218 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L++KP G TS K+R+L+K KKVGH GTLDP +G+L +CVG+ATK+V+
Sbjct: 5 VLLLHKPVGMTSHDCVMKIRKLLKTKKVGHTGTLDPEVSGVLPICVGRATKIVEYVTDKS 64
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPW-EHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y LG +TST D + +P E +K+ DI+ +G QVPPM+SA+KV
Sbjct: 65 KTYDAEITLGFSTSTEDQTGETVSVKPVKEPLKEADIKAVLDELKGPQEQVPPMYSAVKV 124
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIERSL---EDRQNLIFRVTCSKGTYIRSLCAD 486
G+K+Y+ AR G +E R I+I + + ED + F VTCSKGTY+R+L
Sbjct: 125 NGKKLYEYARAGIEVERPKRNITIEDIALTSPVTYKEDTASFRFTVTCSKGTYVRTLAVT 184
Query: 487 FGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAIT 524
G+ LG AH++ L R + G +S D+ + F+ELE+ ++
Sbjct: 185 IGEKLGYPAHMSHLIRTASGDFSLDECFTFEELEQQVS 222
>gi|445115441|ref|ZP_21378227.1| tRNA pseudouridine(55) synthase [Prevotella nigrescens F0103]
gi|444840378|gb|ELX67411.1| tRNA pseudouridine(55) synthase [Prevotella nigrescens F0103]
Length = 235
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 85/218 (38%), Positives = 126/218 (57%), Gaps = 5/218 (2%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLV-KVK----KVGHAGTLDPMATGLLIVCVGKATKLV 363
G ++ ++KP G TSF +R L K++ K+GHAGTLDP+ATG+LI+ G+ TK +
Sbjct: 6 GVLIPIDKPYGITSFKALAHVRYLCSKIQGGRVKIGHAGTLDPLATGVLILATGRMTKQI 65
Query: 364 DRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPM 423
+ Q K Y +LG T ++D + + P EHI E I A F G I Q+PP
Sbjct: 66 ETLQTHTKEYVATMQLGATTPSYDMEHEENETFPTEHITRELIETALQQFIGNIEQIPPT 125
Query: 424 FSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSL 483
+SA+KV G++ +D R GE + L P++I I + +I R ++ L RV C KGTYIR+L
Sbjct: 126 YSAVKVNGQRAFDYRRNGEDVVLKPKKIRIDEIEITRFDAEKMQLTLRVVCGKGTYIRAL 185
Query: 484 CADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
D G+A+ S A+L ALRR +G ++ + +E
Sbjct: 186 ARDLGRAINSGAYLVALRRTRVGDIKVEECINYDHFKE 223
>gi|238916829|ref|YP_002930346.1| tRNA pseudouridine synthase B [Eubacterium eligens ATCC 27750]
gi|238872189|gb|ACR71899.1| tRNA pseudouridine synthase B [Eubacterium eligens ATCC 27750]
Length = 303
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 89/214 (41%), Positives = 123/214 (57%), Gaps = 3/214 (1%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
V K +G+TS V KLR ++K KK+GH GTLDP A G+L VC+GKATKL D K Y
Sbjct: 7 VYKEQGFTSHDVVAKLRGILKTKKIGHTGTLDPDAVGVLPVCIGKATKLCDLITDWGKTY 66
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEK 433
V LG T T D ++ + ++ + D+ K F GE Q+PPM+SA+K G+K
Sbjct: 67 EAVMLLGTTTDTLDISGKIVAQSEV-NVSEVDVLKVCNEFIGEYEQIPPMYSALKYNGQK 125
Query: 434 MYDKARRGESIELSPRRISIFQFDI-ERSLEDRQNLI-FRVTCSKGTYIRSLCADFGKAL 491
+Y+ AR+G IE PR + I + + +L D+Q + V CSKGTYIRSLC D GK L
Sbjct: 126 LYELARKGIEIERKPRTVHINTLRVNDINLSDKQKTVTITVDCSKGTYIRSLCDDIGKKL 185
Query: 492 GSCAHLTALRRDSIGQYSADDAWEFKELEEAITK 525
G A + L R +G++ DD ++ + K
Sbjct: 186 GCGACMMKLTRTRVGEFMLDDTLTLNQISALVLK 219
>gi|312139336|ref|YP_004006672.1| pseudouridylate synthase [Rhodococcus equi 103S]
gi|311888675|emb|CBH47987.1| putative pseudouridylate synthase [Rhodococcus equi 103S]
Length = 308
Score = 168 bits (425), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 92/220 (41%), Positives = 128/220 (58%), Gaps = 12/220 (5%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++V+K G TS V + R+L+ +KVGHAGTLDPMATG+LI+ V +ATKL+
Sbjct: 16 LLIVDKEAGMTSHDVVSRCRKLLNTRKVGHAGTLDPMATGVLILGVERATKLLGLLALTT 75
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K YS RLG+AT+T DA+ V+ + DE I A G+I QVP SAIKV
Sbjct: 76 KSYSATIRLGQATTTDDAEGEVLTTVDASAVTDEQIAAEIAKLTGDIQQVPASVSAIKVD 135
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQ---------NLIFRVTCSKGTYIR 481
G++ + R GE + L+ R +++ +FD+ L R +L V CS GTYIR
Sbjct: 136 GQRAHALIRAGEEVTLAARPVTVSRFDV---LARRDVPGDSGGFVDLDVDVDCSSGTYIR 192
Query: 482 SLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
+L D G ALG HLTALRR S+G ++ + A ++L E
Sbjct: 193 ALARDLGAALGVGGHLTALRRTSVGPFTLEHARTLEQLAE 232
>gi|379709967|ref|YP_005265172.1| tRNA pseudouridine synthase B [Nocardia cyriacigeorgica GUH-2]
gi|374847466|emb|CCF64536.1| tRNA pseudouridine synthase B (tRNA pseudouridine 55 synthase)
(Psi55 synthase) (tRNA-uridine isomerase) (tRNA
pseudouridylate synthase) [Nocardia cyriacigeorgica
GUH-2]
Length = 304
Score = 168 bits (425), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 89/211 (42%), Positives = 129/211 (61%), Gaps = 2/211 (0%)
Query: 313 LVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKG 372
+V+K G TS V + R+L++ KKVGHAGTLDPMATG+L++ V +ATKL+ K
Sbjct: 18 IVDKDGGLTSHDVVARCRKLLRTKKVGHAGTLDPMATGVLVLGVERATKLLGLLTLTTKA 77
Query: 373 YSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGE 432
Y+ RLG+AT+T DA+ ++ + + + DI A+ GEI Q+P SAIKV GE
Sbjct: 78 YTATIRLGQATTTDDAEGEILSTQSAAAVTEADIAAGIAALTGEIQQIPATVSAIKVDGE 137
Query: 433 KMYDKARRGESIELSPRRISIFQFDI--ERSLEDRQNLIFRVTCSKGTYIRSLCADFGKA 490
+ Y + R GE + L+ R +++ +FD+ R+ D +L V CS GTYIR+L D G+
Sbjct: 138 RAYARHRAGEEVRLAARPVTVHRFDLLDRRTAGDFIDLDVVVECSSGTYIRALARDLGEG 197
Query: 491 LGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
LG HLTALRR +G ++ D A +L +
Sbjct: 198 LGVGGHLTALRRTRVGPFTLDHARTLDQLAD 228
>gi|312111632|ref|YP_003989948.1| tRNA pseudouridine synthase B [Geobacillus sp. Y4.1MC1]
gi|336236007|ref|YP_004588623.1| tRNA pseudouridine synthase B [Geobacillus thermoglucosidasius
C56-YS93]
gi|423720551|ref|ZP_17694733.1| tRNA pseudouridine synthase B [Geobacillus thermoglucosidans
TNO-09.020]
gi|311216733|gb|ADP75337.1| tRNA pseudouridine synthase B [Geobacillus sp. Y4.1MC1]
gi|335362862|gb|AEH48542.1| tRNA pseudouridine synthase B [Geobacillus thermoglucosidasius
C56-YS93]
gi|383365904|gb|EID43195.1| tRNA pseudouridine synthase B [Geobacillus thermoglucosidans
TNO-09.020]
Length = 302
Score = 168 bits (425), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 87/221 (39%), Positives = 131/221 (59%), Gaps = 11/221 (4%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L++KP G TS ++RR+++ KKVGH GTLDP +G+L +C+GKAT++ + G
Sbjct: 4 VLLLHKPPGMTSHDCVARIRRMLRTKKVGHTGTLDPNVSGVLPICIGKATRIAEFLTGST 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG AT+T D+D ++ ++ + I DI + GEI Q PPM+SA+KV
Sbjct: 64 KTYEGEVTLGIATTTEDSDGEIVAKQKVDRIIHRSDIEEVFRQLTGEIAQTPPMYSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLI-------FRVTCSKGTYIRS 482
G+K+Y+ AR G +E R ++I + + LE+R FRV CSKGTY+R+
Sbjct: 124 NGKKLYEYARAGVEVERPTRIVTIHELTL---LEERDTFSGDTVSFRFRVVCSKGTYVRT 180
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
L G+ LG AH++ L R + G +S D F++LE I
Sbjct: 181 LAVMIGERLGYPAHMSDLVRTASGPFSLQDCVTFEQLERYI 221
>gi|334143958|ref|YP_004537114.1| tRNA pseudouridine synthase B [Thioalkalimicrobium cyclicum ALM1]
gi|333964869|gb|AEG31635.1| tRNA pseudouridine synthase B [Thioalkalimicrobium cyclicum ALM1]
Length = 318
Score = 168 bits (425), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 88/209 (42%), Positives = 122/209 (58%), Gaps = 2/209 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+VLV+KP G TS V ++ + + KK GH+GTLDP ATGLL VC+G+ATK+
Sbjct: 14 IVLVDKPAGMTSTEVVKRVIKAYRAKKAGHSGTLDPFATGLLPVCLGEATKVSSMLLASD 73
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y + LG+ T T D D VI+ P + + I + SFRGEI Q+PPM+S+IK
Sbjct: 74 KRYIAILDLGQKTDTGDRDGEVIETLPVPELTAQSIEQVLQSFRGEIAQIPPMYSSIKFE 133
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKA 490
G+ ++ AR+G IE PR ++I + + + F V CSKGTYIR L A+ +A
Sbjct: 134 GKSLHVYARKGIEIEREPRNVTIHELTLLNF--SAHQIRFEVHCSKGTYIRVLGAEIAEA 191
Query: 491 LGSCAHLTALRRDSIGQYSADDAWEFKEL 519
LG+ HLTAL R G ++A D E+
Sbjct: 192 LGTLGHLTALHRTQTGVFNAQDMQPLHEI 220
>gi|325281820|ref|YP_004254362.1| tRNA pseudouridine synthase B [Odoribacter splanchnicus DSM 20712]
gi|324313629|gb|ADY34182.1| tRNA pseudouridine synthase B [Odoribacter splanchnicus DSM 20712]
Length = 235
Score = 168 bits (425), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 93/216 (43%), Positives = 130/216 (60%), Gaps = 8/216 (3%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVK----KVGHAGTLDPMATGLLIVCVGKATKLVD 364
G ++LV+KP WTSF V K+R +K KVGHAGTLDP+ATGL+IVC GK TK ++
Sbjct: 15 GALILVDKPLKWTSFDVVNKIRWCLKSACGKIKVGHAGTLDPLATGLVIVCTGKWTKRIE 74
Query: 365 RYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMF 424
Y K Y G T ++D ++ P+ HI + + FRG I QVPP +
Sbjct: 75 DYMAQEKEYVATLCYGAVTPSFDLETLPEGDFPYRHIDRPYLDRVLERFRGVITQVPPAY 134
Query: 425 SAIKVGGEKMYDKARRGESIELSPRRISIFQFD-IERSLEDRQNLIFRVTCSKGTYIRSL 483
SAI+V G++ Y KAR+G IE+ R++ + + + I+ +L D L R+ CSKGTYIRSL
Sbjct: 135 SAIRVDGDRAYKKARKGNEIEMPARQVVVNELEVIDFNLPD---LTLRINCSKGTYIRSL 191
Query: 484 CADFGKALGSCAHLTALRRDSIGQYSADDAWEFKEL 519
D G+A S A+L LRR IG + +DA + ++L
Sbjct: 192 ANDIGQACESGAYLAGLRRTKIGSFQVEDANKMEDL 227
>gi|255066482|ref|ZP_05318337.1| tRNA pseudouridine synthase B [Neisseria sicca ATCC 29256]
gi|255049362|gb|EET44826.1| tRNA pseudouridine synthase B [Neisseria sicca ATCC 29256]
Length = 304
Score = 168 bits (425), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 91/215 (42%), Positives = 124/215 (57%), Gaps = 3/215 (1%)
Query: 307 PFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRY 366
P ++L++KP+G +S T K RRL +K GH G LDP+ATGLL VC G+ATK
Sbjct: 9 PVNGVLLLDKPEGLSSNTALQKARRLYNAEKAGHTGVLDPLATGLLPVCFGEATKFAQYL 68
Query: 367 QGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSA 426
K Y+ +LGEA+ST DA+ +I + I + + A + G I QVPPMFSA
Sbjct: 69 LDADKAYTATLKLGEASSTGDAEGEIIATARAD-ISLAEFQTACQALTGNIRQVPPMFSA 127
Query: 427 IKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCAD 486
+K G+ +Y+ AR+G IE PR I+I+ DI D + V CSKGTYIR+L D
Sbjct: 128 LKHEGKPLYEYARKGIVIERKPRDITIYAIDITEF--DAPKAVIDVRCSKGTYIRTLSED 185
Query: 487 FGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
K +G+ AHLTALRR +S ++ + L E
Sbjct: 186 IAKHIGTFAHLTALRRTETAGFSIRESHTLEALAE 220
>gi|334146562|ref|YP_004509489.1| putative tRNA pseudouridine synthase B [Porphyromonas gingivalis
TDC60]
gi|333803716|dbj|BAK24923.1| putative tRNA pseudouridine synthase B [Porphyromonas gingivalis
TDC60]
Length = 258
Score = 168 bits (425), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 91/220 (41%), Positives = 129/220 (58%), Gaps = 10/220 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR----RLVKVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G ++ +KP WTSF + K R R + +KK VGHAGTLDP+A+G++I+C G+ATK
Sbjct: 13 GEVLYFDKPLTWTSFDLVNKFRYRACRRMGIKKLRVGHAGTLDPLASGVMILCTGRATKQ 72
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
+D Q K Y RLG T ++D ++ P+EHI + + F G I QVPP
Sbjct: 73 IDVLQAGTKEYIATIRLGATTPSFDKETEPDAFFPYEHITRQSVLDILPRFTGTIEQVPP 132
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLI-FRVTCSKGTYIR 481
+FSA++V G++ YD AR+G+ +E+ R + I + ++ LE LI R+ CSKGTYIR
Sbjct: 133 IFSAVRVNGKRAYDLARKGKEVEMKTRTLQIDEIEL---LEYALPLITLRIVCSKGTYIR 189
Query: 482 SLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
+L D AL S HL ALRR +G +D ELE+
Sbjct: 190 ALARDIATALESGGHLEALRRTRVGNARIEDCLSMDELEQ 229
>gi|349610015|ref|ZP_08889377.1| tRNA pseudouridine synthase B [Neisseria sp. GT4A_CT1]
gi|348610785|gb|EGY60467.1| tRNA pseudouridine synthase B [Neisseria sp. GT4A_CT1]
Length = 304
Score = 168 bits (425), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 90/215 (41%), Positives = 124/215 (57%), Gaps = 3/215 (1%)
Query: 307 PFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRY 366
P ++L++KP+G +S T K RRL +K GH G LDP+ATGLL VC G+ATK
Sbjct: 9 PVNGVLLLDKPEGLSSNTALQKTRRLYNAEKAGHTGVLDPLATGLLPVCFGEATKFAQYL 68
Query: 367 QGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSA 426
K Y+ +LGEA+ST DA+ +I + I + + A + G I QVPPMFSA
Sbjct: 69 LDADKAYTATLKLGEASSTGDAEGEIIATARAD-ISLAEFQTACQALTGNIRQVPPMFSA 127
Query: 427 IKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCAD 486
+K G+ +Y+ AR+G IE PR I+I+ DI D + V CSKGTYIR+L D
Sbjct: 128 LKHEGKPLYEYARKGIVIERKPRDITIYAIDITEF--DASKAVIDVRCSKGTYIRTLSED 185
Query: 487 FGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
K +G+ AHLTALRR ++ ++ + L E
Sbjct: 186 IAKHIGTFAHLTALRRTETAGFTIRESHTLEALAE 220
>gi|372325016|ref|ZP_09519605.1| tRNA pseudouridine synthase B [Oenococcus kitaharae DSM 17330]
gi|366983824|gb|EHN59223.1| tRNA pseudouridine synthase B [Oenococcus kitaharae DSM 17330]
Length = 298
Score = 168 bits (425), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 93/218 (42%), Positives = 130/218 (59%), Gaps = 6/218 (2%)
Query: 308 FGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQ 367
+ +VL++KP G TSF V K+R++ K+VGH GTLDP TGLL++ +GKATKL+D Q
Sbjct: 2 YNGIVLIDKPAGMTSFDVVSKMRQVFHQKQVGHTGTLDPSVTGLLVIVLGKATKLIDFLQ 61
Query: 368 GMIKGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSA 426
K Y LG T T D D +I+ P + I + +++ +F G+ QVPPM+SA
Sbjct: 62 QSEKQYCADMILGIKTDTQDLDGQIIETLPLKKPISELKLQQTLTTFLGQNLQVPPMYSA 121
Query: 427 IKVGGEKMYDKARRGESIELSPRRISIFQFD-IERSLED----RQNLIFRVTCSKGTYIR 481
IK+ G+++YD AR+G+++E R I+I Q D I S D RQ L F T SKGTYIR
Sbjct: 122 IKINGKRLYDLARKGQTVEREARSITISQLDQIGASHFDQGAGRQYLSFTATVSKGTYIR 181
Query: 482 SLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKEL 519
+L D G ++ A + LRR + Y D A +EL
Sbjct: 182 TLVEDIGASMAVPAVMKKLRRLAADGYRVDQAVPLEEL 219
>gi|294671350|ref|ZP_06736201.1| hypothetical protein NEIELOOT_03059 [Neisseria elongata subsp.
glycolytica ATCC 29315]
gi|291306982|gb|EFE48225.1| hypothetical protein NEIELOOT_03059 [Neisseria elongata subsp.
glycolytica ATCC 29315]
Length = 304
Score = 168 bits (425), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 90/215 (41%), Positives = 125/215 (58%), Gaps = 3/215 (1%)
Query: 307 PFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRY 366
P ++L++KP+G +S T K RRL +K GH G LDP+ATGLL VC G+ATK
Sbjct: 9 PVNGVLLLDKPEGLSSNTALQKARRLYNAEKAGHTGVLDPLATGLLPVCFGEATKFAQYL 68
Query: 367 QGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSA 426
K Y+ +LGEA+ST DA+ +I + I + + A + G+I QVPPMFSA
Sbjct: 69 LDADKAYTATLKLGEASSTGDAEGEIIATARAD-ISLAEFQTACQALTGDIRQVPPMFSA 127
Query: 427 IKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCAD 486
+K G+ +Y+ AR+G IE PR I+I+ DI D + V CSKGTYIR+L D
Sbjct: 128 LKHEGKPLYEYARKGIVIERKPRDITIYAIDITEF--DAPKAVIDVRCSKGTYIRTLSED 185
Query: 487 FGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
K +G+ AHLTALRR ++ ++ + L E
Sbjct: 186 IAKHIGTFAHLTALRRTETAGFTIRESHTLEALAE 220
>gi|223936322|ref|ZP_03628234.1| tRNA pseudouridine synthase B [bacterium Ellin514]
gi|223894840|gb|EEF61289.1| tRNA pseudouridine synthase B [bacterium Ellin514]
Length = 236
Score = 168 bits (425), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 89/214 (41%), Positives = 122/214 (57%), Gaps = 2/214 (0%)
Query: 308 FGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQ 367
F +L++KP G+TS V +RR ++KKVGH GTLDP ATGLLI+ +G+ TKL +R
Sbjct: 7 FDGALLIDKPVGYTSHDVVDAIRRRFQIKKVGHCGTLDPNATGLLIIVLGRGTKLSERLM 66
Query: 368 GMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAI 427
K Y G + GE T ++DAD ++ P + ++ + AA+F G+ QVPPM SAI
Sbjct: 67 SSDKVYEGTIKFGETTDSYDADGELVTSLPVPPMTLGELNETAAAFVGDQMQVPPMVSAI 126
Query: 428 KVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADF 487
K GG +Y AR+G +E PR I I+ F E FRV +KGTY+RSL D
Sbjct: 127 KKGGVPLYKLARKGVEVEREPRFIHIYNFRFAEYNEPIGR--FRVAATKGTYVRSLAHDL 184
Query: 488 GKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
G+ LG HL LRR G++ +A + E
Sbjct: 185 GQKLGCGGHLATLRRTVSGKFDVANAIRLDQALE 218
>gi|399907831|ref|ZP_10776383.1| tRNA pseudouridine synthase B [Halomonas sp. KM-1]
Length = 305
Score = 168 bits (425), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 90/214 (42%), Positives = 128/214 (59%), Gaps = 2/214 (0%)
Query: 307 PFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRY 366
P ++L++KPKG +S ++RRL++ +K GH GTLDPMATGLL VC+G+ATK
Sbjct: 9 PVNGVLLLDKPKGASSNHALQRVRRLLQAQKAGHTGTLDPMATGLLPVCLGEATKFSAHL 68
Query: 367 QGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSA 426
K Y +LG T T DA+ VI+R + D+ + FRGEI Q PPM+SA
Sbjct: 69 LEADKVYRTRVQLGAVTDTGDAEGEVIERCAVPPLTAADVERVLERFRGEIEQTPPMYSA 128
Query: 427 IKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCAD 486
+K G K+Y+ AR G+S+E + RR+++ +D D V SKGTY+R+L D
Sbjct: 129 LKHQGRKLYELAREGKSVERAVRRVTV--YDARLLAFDGDAFELEVRVSKGTYVRTLAED 186
Query: 487 FGKALGSCAHLTALRRDSIGQYSADDAWEFKELE 520
G+ALGS AH+TALRR + G + ++ + LE
Sbjct: 187 IGRALGSGAHITALRRLATGPFDSEGMLPIEALE 220
>gi|297621091|ref|YP_003709228.1| tRNA pseudouridine synthase B [Waddlia chondrophila WSU 86-1044]
gi|297376392|gb|ADI38222.1| tRNA pseudouridine synthase B [Waddlia chondrophila WSU 86-1044]
Length = 253
Score = 168 bits (425), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 92/208 (44%), Positives = 128/208 (61%), Gaps = 5/208 (2%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKA-TKLVDRYQGMIKG 372
+NKP G T+FT+ KLRRL+ VKK+GHAGTLDP ATG++++ +G+ TK D G K
Sbjct: 24 INKPVGITAFTLVRKLRRLLGVKKIGHAGTLDPFATGVMVMLIGRNYTKFSDHLMGQEKE 83
Query: 373 YSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGE 432
Y G LG T T+D+D +Q E+I A + F+G I Q+PPM+SA K+ G+
Sbjct: 84 YVGRVHLGIVTDTYDSDGVKLQTHSLIP-SIEEISSALSHFQGVIEQIPPMYSAKKINGQ 142
Query: 433 KMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKALG 492
K+Y AR+GE IE P ++ + Q D+ + L RVTCSKGTYIRS+ D G++LG
Sbjct: 143 KLYKLARQGEVIERKPVKLHV-QTDLIA--YEYPYLDIRVTCSKGTYIRSIAHDLGQSLG 199
Query: 493 SCAHLTALRRDSIGQYSADDAWEFKELE 520
AHL L R G + D ++ K+L+
Sbjct: 200 CGAHLATLTRTRSGSLTLADCFDGKQLD 227
>gi|300780971|ref|ZP_07090825.1| tRNA pseudouridine synthase B [Corynebacterium genitalium ATCC
33030]
gi|300532678|gb|EFK53739.1| tRNA pseudouridine synthase B [Corynebacterium genitalium ATCC
33030]
Length = 306
Score = 168 bits (425), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 88/217 (40%), Positives = 128/217 (58%), Gaps = 8/217 (3%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G TS V +LRR +KVGHAGTLDPMATG+L+ + + TKL+
Sbjct: 19 IVVVDKPAGMTSHDVVAQLRRFFGTRKVGHAGTLDPMATGVLVAGIERGTKLLAHLVADD 78
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y+ RLG +T+T DA+ V+ + DE I + + GEI QVP SAIK+
Sbjct: 79 KVYATTIRLGASTTTDDAEGDVLAETDASTLTDEQIMEQVTALTGEIMQVPSKVSAIKID 138
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDI-----ERSLEDRQNLIFRVTCSKGTYIRSLCA 485
G++ ++ R G+ + + R +++F FD+ E S D RV CS GTYIRSL
Sbjct: 139 GKRAHELVREGKEVNIPARPVTVFSFDVAGIRREGSFVDVDA---RVHCSSGTYIRSLAR 195
Query: 486 DFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEA 522
D G+ LG HLTALRR+++G ++ + A + LE++
Sbjct: 196 DMGETLGVGGHLTALRREAVGPFTLEHARTLERLEDS 232
>gi|419780306|ref|ZP_14306156.1| tRNA pseudouridine(55) synthase [Streptococcus oralis SK100]
gi|383185465|gb|EIC77961.1| tRNA pseudouridine(55) synthase [Streptococcus oralis SK100]
Length = 292
Score = 168 bits (425), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 94/219 (42%), Positives = 129/219 (58%), Gaps = 8/219 (3%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ + K G TS KLR+++ KK+GH GTLDP G+L + VGKAT++V+ Q
Sbjct: 4 IINLKKEAGMTSHDAVFKLRKILGTKKIGHGGTLDPDVVGVLPIAVGKATRMVEFMQDEG 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIR-KAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V+ P DE I KA AS G I Q+PPM+SA+KV
Sbjct: 64 KVYEGEITLGYSTTTEDASGEVVAETPVLSPLDETIVDKAIASLTGPITQIPPMYSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIER----SLEDR-QNLIFRVTCSKGTYIRSLC 484
G K+Y+ AR G+ +E R+++I+QF ER S ED+ FRV CSKGTYIR+L
Sbjct: 124 NGRKLYEYARAGQEVERPERQVTIYQF--ERTSPISYEDQLARFTFRVKCSKGTYIRTLS 181
Query: 485 ADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
D G+ LG AH++ L R S +DA +E+ E +
Sbjct: 182 VDLGEKLGYAAHMSHLTRTSAAGLELEDALTLEEISEKV 220
>gi|423240779|ref|ZP_17221893.1| tRNA pseudouridine synthase B [Bacteroides dorei CL03T12C01]
gi|392643741|gb|EIY37490.1| tRNA pseudouridine synthase B [Bacteroides dorei CL03T12C01]
Length = 235
Score = 168 bits (425), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 91/219 (41%), Positives = 128/219 (58%), Gaps = 8/219 (3%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR----RLVKVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G ++ +KP WTSF V K+R R + VKK VGHAGTLDP+ATG++I+C GKATK
Sbjct: 6 GEVLYFDKPLKWTSFAVVNKIRYHICRKLGVKKIKVGHAGTLDPLATGVMIICTGKATKR 65
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ +Q K Y +LG T ++D + + P EHI E + +A F G I Q+PP
Sbjct: 66 IEEFQYHTKEYIATLQLGATTPSFDLEKEIDATYPTEHITRELVEEALQRFIGRIEQIPP 125
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRS 482
+FSA KV G++ YD AR+GE +EL + + I + ++ + + RV CSKGTYIR+
Sbjct: 126 VFSACKVDGKRAYDLARKGEDVELKAKTLIIDEIELLEC--NLPEIKIRVVCSKGTYIRA 183
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
L D G+AL S AHL L R +G +D + E
Sbjct: 184 LARDIGEALNSGAHLIGLIRTRVGDVRLEDCLSVESFPE 222
>gi|423349463|ref|ZP_17327119.1| tRNA pseudouridine synthase B [Scardovia wiggsiae F0424]
gi|393703011|gb|EJD65213.1| tRNA pseudouridine synthase B [Scardovia wiggsiae F0424]
Length = 356
Score = 168 bits (425), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 92/239 (38%), Positives = 134/239 (56%), Gaps = 22/239 (9%)
Query: 307 PFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRY 366
P + +V+KP+G TS V R+L+ +KKVGHAGTLDPMATG L++ GKAT+L++
Sbjct: 14 PSSGVFVVDKPQGVTSHDVVAAARKLLHMKKVGHAGTLDPMATGALVIGFGKATRLLNVI 73
Query: 367 QGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSA 426
G K Y V RLG++T+T DA+ + + + D I AA S G I QVP FSA
Sbjct: 74 TGADKTYETVIRLGQSTATDDAEGSITREYDTSAVSDGQIYAAARSLTGTIRQVPSAFSA 133
Query: 427 IKVGGEKMYDKARRGESIELSPRRISIFQFDIERSL--EDRQ------------------ 466
+KV G + YD AR G+ EL+ R +++ F ++ + E RQ
Sbjct: 134 VKVNGRRAYDLAREGKPAELAARTVTVSDFTVDSIVRREIRQDDSSSPDGSRSTAGSAGA 193
Query: 467 --NLIFRVTCSKGTYIRSLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
++ +TCS GTYIR++ D G L + AHLT LRR +G+++ D A + + A+
Sbjct: 194 VIDIHAHITCSSGTYIRAVARDLGAILSNGAHLTMLRRIRVGKFALDAAQANQPVRPAV 252
>gi|386382795|ref|ZP_10068377.1| tRNA pseudouridine synthase B [Streptomyces tsukubaensis NRRL18488]
gi|385669741|gb|EIF92902.1| tRNA pseudouridine synthase B [Streptomyces tsukubaensis NRRL18488]
Length = 299
Score = 168 bits (425), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 92/234 (39%), Positives = 130/234 (55%), Gaps = 11/234 (4%)
Query: 298 TELPPTWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVG 357
T+ P DG +V+V+KP G+TS V K+R + + ++VGHAGTLDPMATG+L++ +
Sbjct: 2 TQRTPAPDG----LVIVDKPSGFTSHDVVAKMRGIARTRRVGHAGTLDPMATGVLVLGIE 57
Query: 358 KATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEI 417
+ATKL+ K Y G RLG++T T DA+ + + E I A+ G I
Sbjct: 58 RATKLLGHLALTEKEYLGTIRLGQSTVTDDAEGEITASADASGVTREAIGTGVAALSGAI 117
Query: 418 WQVPPMFSAIKVGGEKMYDKARRGESIELSPRRISIFQF---DIERSLEDRQ----NLIF 470
QVP SAIK+ G++ Y + R GE E+ R +++ F D+ D +L+
Sbjct: 118 MQVPSKVSAIKIDGKRSYARVRGGEDFEIPARPVTVSSFRVYDVRPETADDGTPVLDLVV 177
Query: 471 RVTCSKGTYIRSLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAIT 524
V CS GTYIR+L D G LG HLTALRR +G Y D A +L+E +T
Sbjct: 178 SVVCSSGTYIRALARDLGAGLGVGGHLTALRRTRVGPYGLDAAKTLDQLQEELT 231
>gi|322372971|ref|ZP_08047507.1| tRNA pseudouridine synthase B [Streptococcus sp. C150]
gi|419706855|ref|ZP_14234363.1| tRNA pseudouridine synthase B [Streptococcus salivarius PS4]
gi|321278013|gb|EFX55082.1| tRNA pseudouridine synthase B [Streptococcus sp. C150]
gi|383283424|gb|EIC81380.1| tRNA pseudouridine synthase B [Streptococcus salivarius PS4]
Length = 293
Score = 168 bits (425), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 85/217 (39%), Positives = 130/217 (59%), Gaps = 5/217 (2%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ + K G TS KLR+++ KK+GH GTLDP TG+L + VGKAT++++
Sbjct: 5 IINLKKEAGMTSHDAVFKLRKILHEKKIGHGGTLDPDVTGVLPIAVGKATRVIEYMTEAG 64
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y G +G +T+T DA V+Q P + +E + KA +SF G+I Q PPM+SA+KV
Sbjct: 65 KVYEGEITIGFSTTTEDASGDVVQTTPLTELDEESVDKAMSSFEGQITQTPPMYSAVKVN 124
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQN----LIFRVTCSKGTYIRSLCAD 486
G+K+Y+ AR G+ +E R+++I +F + S +N FRV CSKGTY+R+L D
Sbjct: 125 GKKLYEYARAGQEVERPQRQVTITEF-VRTSPIKLENGTARFTFRVACSKGTYVRTLSVD 183
Query: 487 FGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
G LG +H++ALRR + + D A ++ E +
Sbjct: 184 LGAKLGYASHMSALRRTASAGLTLDLALTLSQISEMV 220
>gi|429741607|ref|ZP_19275259.1| tRNA pseudouridine synthase B [Porphyromonas catoniae F0037]
gi|429158253|gb|EKY00812.1| tRNA pseudouridine synthase B [Porphyromonas catoniae F0037]
Length = 239
Score = 168 bits (425), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 92/225 (40%), Positives = 136/225 (60%), Gaps = 10/225 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR----RLVKVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G + ++KP W+SF++ K R R + ++K VGHAGTLDP+ATG++I+C GK TK
Sbjct: 9 GATIALDKPLTWSSFSLVNKFRYEACRFLGIRKLKVGHAGTLDPLATGVMILCTGKHTKR 68
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
+ + Q K Y RLG+ T T+D +S P +HI E + + F G I QVPP
Sbjct: 69 IPQLQEGRKEYIADIRLGQTTPTYDMESEPDAFFPTDHITRELVLERLQGFVGTIEQVPP 128
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFD-IERSLEDRQNLIFRVTCSKGTYIR 481
FSA+KV G++ YD AR+G EL + + I + + + +L D Q RV CSKGTYIR
Sbjct: 129 AFSAVKVDGKRAYDLARKGRDFELKAKTLVIDEIELLGYALPDIQ---IRVVCSKGTYIR 185
Query: 482 SLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAITKN 526
+L D G ALGS HLTALRR +G+++ D + ++++ + ++
Sbjct: 186 ALARDIGLALGSGGHLTALRRTRVGEFTLADCYRVEDIQSFLHQH 230
>gi|21224057|ref|NP_629836.1| tRNA pseudouridine synthase B [Streptomyces coelicolor A3(2)]
gi|13959606|sp|Q9Z528.1|TRUB_STRCO RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|4464271|emb|CAB37474.1| probable tRNA pseudouridine synthase [Streptomyces coelicolor
A3(2)]
Length = 301
Score = 168 bits (425), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 95/234 (40%), Positives = 132/234 (56%), Gaps = 11/234 (4%)
Query: 298 TELPPTWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVG 357
TE T DG +V+V+KP G+TS V K+R + + ++VGHAGTLDPMATG+L++ V
Sbjct: 2 TEKHTTPDG----LVIVDKPSGFTSHDVVAKMRGIARTRRVGHAGTLDPMATGVLVLGVE 57
Query: 358 KATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEI 417
+ATKL+ K Y G RLG+ T T DA+ + + E I A G+I
Sbjct: 58 RATKLLGHLALTEKEYLGTIRLGQTTLTDDAEGEITGSRDASKVTWEAIDAGVAELSGDI 117
Query: 418 WQVPPMFSAIKVGGEKMYDKARRGESIELSPRRISIFQF---DIERSLEDRQ----NLIF 470
QVP SAIK+ G + Y +AR GE E+ R +++ F D+ ++ D +L+
Sbjct: 118 MQVPSKVSAIKIKGVRSYKRAREGEEFEIPARPVTVSSFAVYDVRDAVADDGTPVLDLVV 177
Query: 471 RVTCSKGTYIRSLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAIT 524
VTCS GTYIR+L D G LG HLTALRR +G Y D A +L++ +T
Sbjct: 178 SVTCSSGTYIRALARDLGAGLGVGGHLTALRRTRVGPYKLDGARTLDQLQQELT 231
>gi|395203879|ref|ZP_10394922.1| tRNA pseudouridine synthase B [Propionibacterium humerusii P08]
gi|422439577|ref|ZP_16516398.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL037PA3]
gi|422471817|ref|ZP_16548308.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL037PA2]
gi|422571829|ref|ZP_16647406.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL044PA1]
gi|313836836|gb|EFS74550.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL037PA2]
gi|314929752|gb|EFS93583.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL044PA1]
gi|314972185|gb|EFT16282.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL037PA3]
gi|328907610|gb|EGG27374.1| tRNA pseudouridine synthase B [Propionibacterium humerusii P08]
Length = 298
Score = 168 bits (425), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 99/221 (44%), Positives = 129/221 (58%), Gaps = 5/221 (2%)
Query: 307 PFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRY 366
P G +V VNKP G TS V G++RRL+ +KVGHAGTLDPMA+G+L+V V +AT+L+
Sbjct: 8 PSGILV-VNKPAGPTSHQVVGRVRRLLGTRKVGHAGTLDPMASGVLVVGVNRATRLLGHL 66
Query: 367 QGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSA 426
K Y RLG +T T DA+ V I DE IR A + GEI QVP SA
Sbjct: 67 ALHDKDYIATMRLGVSTVTDDAEGDVTATTDASAIDDEAIRAAMSRQVGEIQQVPTAVSA 126
Query: 427 IKVGGEKMYDKARRGESIELSPRRISIFQF---DIERSLEDRQNLIFRVTCSKGTYIRSL 483
IKV G++ Y K R GE + L PR +++ F DI R + ++ VTCS GTY+R+L
Sbjct: 127 IKVDGQRAYAKVRAGEDVVLQPRAVTVSLFEATDIRRQ-GEVVDVDVEVTCSSGTYVRAL 185
Query: 484 CADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAIT 524
D G LG HLTALRR +G ++ A E+A+T
Sbjct: 186 ARDVGTDLGVGGHLTALRRTRVGPFALTAACADIFAEDAVT 226
>gi|359406442|ref|ZP_09199134.1| tRNA pseudouridine synthase B [Prevotella stercorea DSM 18206]
gi|357556149|gb|EHJ37770.1| tRNA pseudouridine synthase B [Prevotella stercorea DSM 18206]
Length = 237
Score = 168 bits (425), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 87/219 (39%), Positives = 127/219 (57%), Gaps = 6/219 (2%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVK------KVGHAGTLDPMATGLLIVCVGKATKL 362
G ++ +NKP G TSF +R+ + V+ K+GHAGTLDP+ATG+L++C GK TK
Sbjct: 6 GEVIAINKPLGMTSFCALAIVRKRICVRLGVKKLKIGHAGTLDPLATGVLVLCTGKFTKR 65
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ +Q K Y+ +LG T ++D + PV P + I E I F G+I QVPP
Sbjct: 66 IEEFQMHGKEYTATIQLGATTPSYDMEHPVNATYPTDGITRERIEDVLKQFVGDIEQVPP 125
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRS 482
FSA KV G++ YD R+G+ +EL P++I I + ++ + + RV C KGTYIR+
Sbjct: 126 TFSACKVSGQRSYDLRRKGKDVELQPKQIHIDEIELTAFDPETMQMSVRVVCGKGTYIRA 185
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
L D G+AL S +LTAL R G+ ++ E EE
Sbjct: 186 LARDIGRALDSGGYLTALCRTRSGEQRVENCIELDGFEE 224
>gi|417090490|ref|ZP_11955987.1| tRNA pseudouridine synthase B [Streptococcus suis R61]
gi|353533625|gb|EHC03275.1| tRNA pseudouridine synthase B [Streptococcus suis R61]
Length = 284
Score = 168 bits (425), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 86/210 (40%), Positives = 125/210 (59%), Gaps = 3/210 (1%)
Query: 320 WTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSGVFRL 379
TS V KLR++++ KK+GH GTLDP TG+L + VGKAT++++ Q K Y G L
Sbjct: 1 MTSHDVVFKLRKILQEKKIGHGGTLDPDVTGVLPIAVGKATRMIEYMQEEGKIYEGEITL 60
Query: 380 GEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEKMYDKAR 439
G +T+T DA ++++ P I ++ + KA ASF G I Q+PPM+SA+KV G K+Y+ AR
Sbjct: 61 GYSTTTEDASGDLVEQTPVLEIAEQAVDKAMASFIGTITQIPPMYSAVKVNGRKLYEYAR 120
Query: 440 RGESIELSPRRISIFQFDIERSLE---DRQNLIFRVTCSKGTYIRSLCADFGKALGSCAH 496
GE +E R+I I+ F+ +E D FRV C KGTY+R+L D G LG +H
Sbjct: 121 AGEEVERPQRQIEIYSFERTSPIELADDCARFTFRVRCGKGTYVRTLSVDLGAKLGYASH 180
Query: 497 LTALRRDSIGQYSADDAWEFKELEEAITKN 526
++ L R S DA +E+ + +N
Sbjct: 181 MSKLERTGSAGMSLADALTIEEIANKVAQN 210
>gi|433608716|ref|YP_007041085.1| tRNA pseudouridine synthase B [Saccharothrix espanaensis DSM 44229]
gi|407886569|emb|CCH34212.1| tRNA pseudouridine synthase B [Saccharothrix espanaensis DSM 44229]
Length = 298
Score = 167 bits (424), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 87/214 (40%), Positives = 125/214 (58%), Gaps = 2/214 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G TS V K+RR++ +KVGHAGTLDPMATG+L++ V +ATKL+
Sbjct: 12 LVVVDKPDGMTSHDVVAKVRRILGTRKVGHAGTLDPMATGVLVLGVERATKLLGHLALDS 71
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y RLG AT+T DA+ V+ + ++ IR A G I QVP SA+K+
Sbjct: 72 KAYLSTIRLGSATTTDDAEGEVLSTSDASAVAEDAIRAGVAKLTGPIQQVPSAVSAVKID 131
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIE--RSLEDRQNLIFRVTCSKGTYIRSLCADFG 488
G++ Y + R GE++E+ R +++ +FD+ R + L V CS GTY+R+L D G
Sbjct: 132 GKRAYARVRDGETVEIPARPVTVHRFDVLSIRREGEATELDVMVECSSGTYVRALARDLG 191
Query: 489 KALGSCAHLTALRRDSIGQYSADDAWEFKELEEA 522
LG HL ALRR +G + A +LEE+
Sbjct: 192 ADLGVGGHLAALRRTRVGPFDLRVAKTLAQLEES 225
>gi|359411438|ref|ZP_09203903.1| tRNA pseudouridine synthase B [Clostridium sp. DL-VIII]
gi|357170322|gb|EHI98496.1| tRNA pseudouridine synthase B [Clostridium sp. DL-VIII]
Length = 300
Score = 167 bits (424), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 88/213 (41%), Positives = 126/213 (59%), Gaps = 2/213 (0%)
Query: 316 KPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSG 375
K KG +SF V K+++L KKVGH GTLDP ATG+L VC+GKATK +D KGY
Sbjct: 18 KNKGMSSFDVVRKIKKLADEKKVGHTGTLDPEATGVLPVCIGKATKTIDYIMNSNKGYEV 77
Query: 376 VFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEKMY 435
F G T+T+D + V++R H+ +E++ K SF GE QVPPM+SA+K G ++Y
Sbjct: 78 KFLFGVKTTTYDLEGEVVERNETSHLTEEEVSKVILSFIGEYDQVPPMYSALKKNGVRLY 137
Query: 436 DKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKALGSCA 495
+ AR+G IE R+++I F+I D + +V CSKGTYIRSLC D G+ L A
Sbjct: 138 ELARQGIEIEREARKVNI--FNISNLKIDLPYVSMKVACSKGTYIRSLCYDIGEKLKVGA 195
Query: 496 HLTALRRDSIGQYSADDAWEFKELEEAITKNYF 528
+T L R + +++ ++L + +Y
Sbjct: 196 AMTELNRYETSVFVQENSVNIEDLTKENISDYI 228
>gi|421894437|ref|ZP_16324926.1| tRNA pseudouridine synthase B [Pediococcus pentosaceus IE-3]
gi|385272741|emb|CCG90298.1| tRNA pseudouridine synthase B [Pediococcus pentosaceus IE-3]
Length = 299
Score = 167 bits (424), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 85/218 (38%), Positives = 135/218 (61%), Gaps = 6/218 (2%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ +NK +G TS V K+R +++ KKVGH+GTLDP G+L +CVG+ATK+VD G
Sbjct: 4 IIPINKERGMTSHDVVAKVRGILRTKKVGHSGTLDPSVDGVLPICVGRATKVVDYLMGFG 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T D D V++ + + + +E I + + G + Q+PPM+SA+KV
Sbjct: 64 KVYQGSITLGFSTTTEDLDGEVVETKKLDKPLTNEQINQTLTAMTGTLVQIPPMYSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIER-SLED----RQNLIFRVTCSKGTYIRSLC 484
G K+Y+ AR GE++E R+I ++ F R S+ D +Q + F+V+C KGTY+R+L
Sbjct: 124 KGRKLYEYARAGETVERPQRQIKVYDFVQTRPSIFDAEKGQQTIYFKVSCGKGTYVRTLA 183
Query: 485 ADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEA 522
DFG+ G A ++ L R + G + ++ +LE+A
Sbjct: 184 VDFGRHFGLPAVMSDLSRLASGGFKIEECLTLSDLEQA 221
>gi|113868279|ref|YP_726768.1| tRNA pseudouridine synthase B [Ralstonia eutropha H16]
gi|113527055|emb|CAJ93400.1| tRNA pseudouridine synthase B [Ralstonia eutropha H16]
Length = 296
Score = 167 bits (424), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 92/213 (43%), Positives = 132/213 (61%), Gaps = 4/213 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
M+L++KP G +S + +RL++ K GH GTLDP+ATGLL +C G+ATK
Sbjct: 1 MLLLDKPLGLSSNDALVRAKRLLRAAKAGHTGTLDPLATGLLPLCFGEATKFSQDLLEAD 60
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKD-EDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y V RLG +ST DA+ ++ + E D + +A ASF GEI QVPPM SA+K
Sbjct: 61 KTYDAVVRLGSRSSTGDAEGELL--DVREVTCDCAAVEQALASFLGEIEQVPPMHSALKK 118
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFD-IERSLEDRQNLIFRVTCSKGTYIRSLCADFG 488
G +Y+ AR G+++E + RR++I +E +L + + RVTCSKGTYIR+L D G
Sbjct: 119 DGRPLYEYARAGQTVERAARRVTIRSIALLECALPEAPSFTMRVTCSKGTYIRTLAEDIG 178
Query: 489 KALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
+ALG AHLT LRR ++G + D A +++E+
Sbjct: 179 EALGCGAHLTGLRRIAVGDLTLDGAVTLEQIEQ 211
>gi|404377953|ref|ZP_10983053.1| tRNA pseudouridine synthase B [Ralstonia sp. 5_2_56FAA]
gi|348615884|gb|EGY65392.1| tRNA pseudouridine synthase B [Ralstonia sp. 5_2_56FAA]
Length = 324
Score = 167 bits (424), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 92/207 (44%), Positives = 128/207 (61%), Gaps = 7/207 (3%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L++KP GW+S + +RL+ KK GH GTLDP+ATGLL +C G+ATK
Sbjct: 26 VLLLDKPIGWSSNDALIRAKRLLWAKKAGHTGTLDPLATGLLPLCFGEATKFSQDLLDAD 85
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y V RLG TST DA+ V+ P + E ++ A A F GEI QVPPM SA+K
Sbjct: 86 KTYETVVRLGIRTSTADAEGEVLSERPVS-VTPERLQAAIARFVGEIDQVPPMHSALKKD 144
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQN----LIFRVTCSKGTYIRSLCAD 486
G+ +Y+ AR G+++E + RR++I+ D+ + D Q+ + RV+CSKGTYIR+L D
Sbjct: 145 GKPLYEYARAGQTVERAARRVTIYGIDLLAT--DLQSAEPTITLRVSCSKGTYIRTLGED 202
Query: 487 FGKALGSCAHLTALRRDSIGQYSADDA 513
G+ALG HL ALRR +G + D A
Sbjct: 203 IGEALGCGGHLVALRRTQVGNLTLDGA 229
>gi|383810700|ref|ZP_09966189.1| tRNA pseudouridine(55) synthase [Prevotella sp. oral taxon 306 str.
F0472]
gi|383356671|gb|EID34166.1| tRNA pseudouridine(55) synthase [Prevotella sp. oral taxon 306 str.
F0472]
Length = 232
Score = 167 bits (424), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 85/217 (39%), Positives = 124/217 (57%), Gaps = 5/217 (2%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVK-----KVGHAGTLDPMATGLLIVCVGKATKLV 363
G ++ ++KP G TSF +R L K+GHAGTLDP+ATG+LI+ GK TK +
Sbjct: 6 GVIIPIDKPYGITSFKALAHVRYLCTQANDGKVKIGHAGTLDPLATGVLILATGKMTKQI 65
Query: 364 DRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPM 423
+ Q K Y +LG T ++D + V +R P EHI E I K F G+I Q+PP
Sbjct: 66 ETLQAHTKEYVATLQLGATTPSYDMEHEVNERFPVEHITRELIDKTLPQFVGDIEQIPPT 125
Query: 424 FSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSL 483
+SA+KV G++ +D R G+ + L + I I + ++ D+ L RV C KGTYIR+L
Sbjct: 126 YSAVKVDGKRAFDYRRSGKEVVLKAKNIHIDEIEVLNFDSDKMQLTIRVGCGKGTYIRAL 185
Query: 484 CADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELE 520
D G+A+ S A+LT+LRR +G +D + + E
Sbjct: 186 ARDLGRAMNSGAYLTSLRRTRVGDVKVEDCINYDKFE 222
>gi|145295883|ref|YP_001138704.1| tRNA pseudouridine synthase B [Corynebacterium glutamicum R]
gi|189036467|sp|A4QEY6.1|TRUB_CORGB RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|140845803|dbj|BAF54802.1| hypothetical protein [Corynebacterium glutamicum R]
Length = 297
Score = 167 bits (424), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 90/229 (39%), Positives = 129/229 (56%), Gaps = 12/229 (5%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G TS V KLRR +KVGHAGTLDPMATG+L+V + + T+ +
Sbjct: 10 LVIVDKPAGMTSHDVVSKLRRAFSTRKVGHAGTLDPMATGVLVVGIERGTRFLAHMVAST 69
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y RLG ATST DA+ VI + I A+ G+I Q P SAIK+
Sbjct: 70 KAYDATIRLGAATSTDDAEGEVISTTDASGLDHRAILAEIANLTGDIMQKPTKVSAIKID 129
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQ--NLIFRVTCSKGTYIRSLCADFG 488
G++ +++ R GE +++ R +++ FD+ D + +L RV CS GTYIR+L D G
Sbjct: 130 GKRAHERVRDGEEVDIPARPVTVSVFDVLDYRVDSEFYDLDVRVHCSSGTYIRALARDLG 189
Query: 489 KALGSCAHLTALRRDSIGQYSADDAWEFKELEE----------AITKNY 527
AL HLTALRR +G ++ +DA +L+E A+T++Y
Sbjct: 190 NALQVGGHLTALRRTEVGPFTLNDATPLSKLQENPELSLNLDQALTRSY 238
>gi|29829090|ref|NP_823724.1| tRNA pseudouridine synthase B [Streptomyces avermitilis MA-4680]
gi|37088246|sp|Q82K56.1|TRUB_STRAW RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|29606196|dbj|BAC70259.1| putative tRNA pseudouridine synthase [Streptomyces avermitilis
MA-4680]
Length = 301
Score = 167 bits (424), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 91/221 (41%), Positives = 125/221 (56%), Gaps = 7/221 (3%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G+TS V K+R + + ++VGHAGTLDPMATG+L++ V KATKL+
Sbjct: 11 LVIVDKPSGFTSHDVVAKMRGIARTRRVGHAGTLDPMATGVLVLGVEKATKLLGHLALTE 70
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y G RLG+ T T DA+ +I + + I A G I QVP SAIK+
Sbjct: 71 KEYLGTIRLGQNTLTDDAEGEIISSTDASRVTRDAIDAGVAKLSGAIMQVPSKVSAIKID 130
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDI----ERSLEDRQ---NLIFRVTCSKGTYIRSL 483
G + Y +AR GE E+ R +++ F + + ED +L+ V CS GTYIR+L
Sbjct: 131 GVRSYKRAREGEDFEIPARPVTVSSFAVYDVRDAVAEDGTPVLDLVVSVVCSSGTYIRAL 190
Query: 484 CADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAIT 524
D G LG HLTALRR +G Y D A +L+E +T
Sbjct: 191 ARDLGADLGVGGHLTALRRTRVGPYKLDAARTLDQLQEELT 231
>gi|329936651|ref|ZP_08286358.1| tRNA pseudouridine synthase [Streptomyces griseoaurantiacus M045]
gi|329303881|gb|EGG47764.1| tRNA pseudouridine synthase [Streptomyces griseoaurantiacus M045]
Length = 301
Score = 167 bits (424), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 87/221 (39%), Positives = 129/221 (58%), Gaps = 7/221 (3%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G+TS V K+R + + ++VGHAGTLDPMATG+L++ V +ATKL+
Sbjct: 11 LVIVDKPSGFTSHDVVAKMRGIARTRRVGHAGTLDPMATGVLVLGVERATKLLGHLALTE 70
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y G RLG++T T DA+ + I E + A+ G+I QVP SAIK+
Sbjct: 71 KEYLGTVRLGQSTLTDDAEGEITASADASAITREAVEAGVAALTGDIMQVPSKVSAIKIN 130
Query: 431 GEKMYDKARRGESIELSPRRISIFQF---DIERSLEDRQ----NLIFRVTCSKGTYIRSL 483
G + Y +AR GE ++ R +++ F D+ ++ + +L+ V CS GTYIR+L
Sbjct: 131 GVRSYKRARDGEEFDIPARPVTVSSFTLHDVRDAVAENGTPVLDLVVSVVCSSGTYIRAL 190
Query: 484 CADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAIT 524
D G LG HLTALRR +G Y D A ++L++ +T
Sbjct: 191 ARDLGAGLGVGGHLTALRRTRVGPYRIDGARTLEQLQKELT 231
>gi|453076250|ref|ZP_21979027.1| tRNA pseudouridine synthase B [Rhodococcus triatomae BKS 15-14]
gi|452761369|gb|EME19676.1| tRNA pseudouridine synthase B [Rhodococcus triatomae BKS 15-14]
Length = 306
Score = 167 bits (424), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 90/228 (39%), Positives = 132/228 (57%), Gaps = 4/228 (1%)
Query: 297 STELPPTWDGPFGT-MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVC 355
S PP+ G G +++V+K G TS V + R+++ +KVGHAGTLDPMATG+L++
Sbjct: 2 SAHRPPS-SGLLGAGLLIVDKDGGMTSHDVVARCRKILHTRKVGHAGTLDPMATGVLVLG 60
Query: 356 VGKATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRG 415
V +ATKL+ K YS RLG+AT+T DA+ V+ + D+D+ A+ G
Sbjct: 61 VERATKLLGLLSLTTKAYSATIRLGQATTTDDAEGEVLSTANASAVTDDDVAAVVATLTG 120
Query: 416 EIWQVPPMFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDI--ERSLEDRQNLIFRVT 473
+I QVP SAIKV G++ + R GE EL R +++ +F++ R + +L V
Sbjct: 121 DILQVPTRVSAIKVDGQRAHKLVRAGEDFELEARPVTVERFEVVASRRQDSFVDLDVEVE 180
Query: 474 CSKGTYIRSLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
CS GTY+R+L D G AL HLTALRR +G ++ + A +L E
Sbjct: 181 CSSGTYVRALARDLGAALAVGGHLTALRRTRVGPFTLEHARTLDQLAE 228
>gi|404329095|ref|ZP_10969543.1| tRNA pseudouridine synthase B [Sporolactobacillus vineae DSM 21990
= SL153]
Length = 303
Score = 167 bits (424), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 86/223 (38%), Positives = 129/223 (57%), Gaps = 2/223 (0%)
Query: 308 FGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQ 367
+ ++ + KP+G TS +LR+L+K KK+GH GTLDP G+L++C+G+ATK+
Sbjct: 4 YNGLLPLYKPRGMTSHDCVARLRKLLKFKKIGHTGTLDPEVDGVLVLCLGRATKIAQYLL 63
Query: 368 GMIKGYSGVFRLGEATSTWDADSPVIQ-REPWEHIKDEDIRKAAASFRGEIWQVPPMFSA 426
K Y G RLG AT+T D V + RE E D+ + SF G + Q P++SA
Sbjct: 64 EFNKAYEGTIRLGTATTTEDEAGAVTESRELGEDFSRRDLEQVFQSFTGNVRQTVPIYSA 123
Query: 427 IKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLED-RQNLIFRVTCSKGTYIRSLCA 485
+KV G+K+Y+ AR G S+ R I I++ + + E R ++ F V+CSKGTY+R+L
Sbjct: 124 VKVNGKKLYEYAREGLSVARPVREIHIYELKLTGNAEVYRSDIPFFVSCSKGTYVRTLAV 183
Query: 486 DFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAITKNYF 528
D G+ LG AHL +L R G ++ D W F +E + +F
Sbjct: 184 DIGRKLGYPAHLKSLTRVQAGSFTLADCWSFDRIESLLDSGHF 226
>gi|94263053|ref|ZP_01286872.1| tRNA pseudouridine synthase B [delta proteobacterium MLMS-1]
gi|93456596|gb|EAT06704.1| tRNA pseudouridine synthase B [delta proteobacterium MLMS-1]
Length = 259
Score = 167 bits (424), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 96/216 (44%), Positives = 129/216 (59%), Gaps = 3/216 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGK-ATKLVDRYQGM 369
++ ++KP G +SF + +RR + +KKVGHAGTLDP A+GLL+VCVG+ AT+LV+R
Sbjct: 13 VIPLDKPVGPSSFRLVQLVRRALGIKKVGHAGTLDPFASGLLLVCVGRGATRLVERLMAG 72
Query: 370 IKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y +LG AT T D + V H + +++ FRGEI Q PP FSA+K
Sbjct: 73 DKEYLATLQLGVATDTHDREGQVTATAEVTHEQLLRLQEVLFRFRGEILQSPPAFSAVKH 132
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQN-LIFRVTCSKGTYIRSLCADFG 488
G +Y ARRGE IE PRR+ I + L+ RQ L+ RV CSKGTYIRSL + G
Sbjct: 133 QGRPLYVYARRGEIIEKPPRRVKIHELT-PLELDRRQRRLVIRVRCSKGTYIRSLAHEIG 191
Query: 489 KALGSCAHLTALRRDSIGQYSADDAWEFKELEEAIT 524
++LG AHL LRR + G + ++A L E T
Sbjct: 192 QSLGCGAHLLELRRLASGPFRVEEAVAGDLLAEPAT 227
>gi|390454023|ref|ZP_10239551.1| tRNA pseudouridine synthase B [Paenibacillus peoriae KCTC 3763]
Length = 311
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 88/225 (39%), Positives = 134/225 (59%), Gaps = 9/225 (4%)
Query: 303 TWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKL 362
+W+G ++ V KP G+TS V K RRL+ +K++GH GTLDP TG+L +C+G+AT++
Sbjct: 10 SWEG----ILPVLKPAGFTSHDVVAKARRLLGMKRIGHTGTLDPQVTGVLPLCLGRATRV 65
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQRE--PWEHIKDEDIRKAAASFRGEIWQV 420
V+ Q K Y RLG AT T D V + P E + +E+++ A F G I QV
Sbjct: 66 VEYMQERPKEYQATLRLGIATDTEDLTGTVTEESERPVE-VTEEEVKAALERFVGTILQV 124
Query: 421 PPMFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIE--RSLEDRQNLIFRVTCSKGT 478
PPM+SA+KV G+++Y+ AR G+++E R + I++ ++ ++ FR CSKGT
Sbjct: 125 PPMYSALKVNGKRLYELAREGKTVERKSREVDIYELEMTGFEQTGSYVDISFRALCSKGT 184
Query: 479 YIRSLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
YIR+LC D G+ALG + + L R SA+ F+E+E +
Sbjct: 185 YIRTLCVDIGRALGYPSTMVKLERTMSAGISAERCLTFEEIERCV 229
>gi|168184621|ref|ZP_02619285.1| tRNA pseudouridine synthase B [Clostridium botulinum Bf]
gi|237795851|ref|YP_002863403.1| tRNA pseudouridine synthase B [Clostridium botulinum Ba4 str. 657]
gi|182672271|gb|EDT84232.1| tRNA pseudouridine synthase B [Clostridium botulinum Bf]
gi|229262556|gb|ACQ53589.1| tRNA pseudouridine synthase B [Clostridium botulinum Ba4 str. 657]
Length = 289
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 92/215 (42%), Positives = 131/215 (60%), Gaps = 3/215 (1%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
V KPKG TSF V +R++ K+KKVGH GTLDP+A+G+L VC+GKATK+VD K Y
Sbjct: 7 VLKPKGITSFDVVRDIRKIAKIKKVGHTGTLDPLASGVLPVCIGKATKIVDYIMEGTKTY 66
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEK 433
+LG T T+D + V++ E ++ ++ + + G+I QVPPM+SA+K+ G+K
Sbjct: 67 RVEMKLGTTTDTYDREGTVLE-EKEINLTPIEVEETIKKYIGDIDQVPPMYSALKINGQK 125
Query: 434 MYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKALGS 493
+Y+ AR+G IE R+I I+ I D +IF V CSKGTYIRSLC D GK L S
Sbjct: 126 LYNLARKGIEIEREARKIHIYDICILSI--DLPYVIFDVKCSKGTYIRSLCFDIGKDLDS 183
Query: 494 CAHLTALRRDSIGQYSADDAWEFKELEEAITKNYF 528
A + L+R ++ +A + ++L E K Y
Sbjct: 184 GAVMWNLQRLEASPFNIKEAIKLEDLNEENIKQYI 218
>gi|288926586|ref|ZP_06420503.1| tRNA pseudouridine synthase B [Prevotella buccae D17]
gi|288336663|gb|EFC75032.1| tRNA pseudouridine synthase B [Prevotella buccae D17]
Length = 235
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 87/219 (39%), Positives = 125/219 (57%), Gaps = 6/219 (2%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVK------KVGHAGTLDPMATGLLIVCVGKATKL 362
G ++ ++KP +SF +R L+ K KVGHAGTLDP+ATG+L++C GK TK
Sbjct: 6 GEIICIDKPYRMSSFGALAHVRYLISQKMGVKRVKVGHAGTLDPLATGVLVLCTGKMTKN 65
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
+++ Q K Y+ +LG T+++D + V P HI E I + F GEI QVPP
Sbjct: 66 IEQLQYHTKEYTATLQLGATTASYDREHTVNATYPTGHITRELILETLPQFVGEIQQVPP 125
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRS 482
+SA KV G++ Y R G+ +EL P+ + I + ++ + RV C KGTYIR+
Sbjct: 126 SYSACKVNGDRAYKLRRNGKDVELQPKTLQIDEIELTGFDASTMQMSIRVVCGKGTYIRA 185
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
L D G+ALGS A LTALRR +G+ ++ EF E
Sbjct: 186 LARDIGRALGSGAFLTALRRTRVGEVRVENCIEFDRFRE 224
>gi|241662816|ref|YP_002981176.1| tRNA pseudouridine synthase B [Ralstonia pickettii 12D]
gi|240864843|gb|ACS62504.1| tRNA pseudouridine synthase B [Ralstonia pickettii 12D]
Length = 318
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 92/207 (44%), Positives = 128/207 (61%), Gaps = 7/207 (3%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L++KP GW+S + +RL+ KK GH GTLDP+ATGLL +C G+ATK
Sbjct: 20 VLLLDKPIGWSSNDALIRAKRLLWAKKAGHTGTLDPLATGLLPLCFGEATKFSQDLLDAD 79
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y V RLG TST DA+ V+ P + E ++ A A F GEI QVPPM SA+K
Sbjct: 80 KTYETVVRLGIRTSTADAEGEVLSERPVS-VTPERLQAAIARFVGEIDQVPPMHSALKKD 138
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQN----LIFRVTCSKGTYIRSLCAD 486
G+ +Y+ AR G+++E + RR++I+ D+ + D Q+ + RV+CSKGTYIR+L D
Sbjct: 139 GKPLYEYARAGQTVERAARRVTIYGIDLLAT--DLQSAEPTITLRVSCSKGTYIRTLGED 196
Query: 487 FGKALGSCAHLTALRRDSIGQYSADDA 513
G+ALG HL ALRR +G + D A
Sbjct: 197 IGEALGCGGHLVALRRTQVGNLTLDGA 223
>gi|418052810|ref|ZP_12690888.1| tRNA pseudouridine synthase B [Mycobacterium rhodesiae JS60]
gi|353180110|gb|EHB45662.1| tRNA pseudouridine synthase B [Mycobacterium rhodesiae JS60]
Length = 295
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 94/216 (43%), Positives = 127/216 (58%), Gaps = 8/216 (3%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G TS V G+ RR+ +KVGHAGTLDPMATG+L+V + +ATK++
Sbjct: 8 IVVVDKPAGMTSHDVVGRCRRIFGTRKVGHAGTLDPMATGVLVVGIERATKILGLLTATS 67
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y+ RLG TST DA+ V+Q E + DE I+ A RG I Q P SA+KVG
Sbjct: 68 KSYAATIRLGRTTSTEDAEGEVLQDISAERVTDEQIQAGVAPLRGTISQRPSAVSAVKVG 127
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQ-----NLIFRVTCSKGTYIRSLCA 485
G++ Y R G+ ++L+ R + I +FD+ E R+ ++ V CS GTYIR+L
Sbjct: 128 GKRAYQLVREGQDVQLAERTVRIDRFDVH---EIRREGPFIDVDVDVDCSSGTYIRALAR 184
Query: 486 DFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
D G LG HLTALRR +G Y D A +L E
Sbjct: 185 DLGDGLGVGGHLTALRRTRVGGYGLDHARSLDQLTE 220
>gi|261407933|ref|YP_003244174.1| tRNA pseudouridine synthase B [Paenibacillus sp. Y412MC10]
gi|261284396|gb|ACX66367.1| tRNA pseudouridine synthase B [Paenibacillus sp. Y412MC10]
Length = 303
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 83/216 (38%), Positives = 132/216 (61%), Gaps = 8/216 (3%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ V+KP GWTS V K+R +V++K++GH GTLDP TG+L +C+G+AT++V+ Q +
Sbjct: 7 ILAVHKPAGWTSHDVVAKVRGMVRLKRIGHTGTLDPEVTGVLPLCLGRATRVVEYLQELP 66
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y V RLG +T T D V++ + ++ +A SFRG+I QVPPM+SA+K+
Sbjct: 67 KEYHAVLRLGYSTDTEDITGNVVETADEVRVTRDEALEALQSFRGQISQVPPMYSAVKIN 126
Query: 431 GEKMYDKARRGESIELSPRRISIFQ-----FDIERSLEDRQNLIFRVTCSKGTYIRSLCA 485
G+++Y+ AR G+++E R ++I + FD E + + FRV CSKGTYIR+LC
Sbjct: 127 GKRLYELAREGKTVERKSRTVTIHEIEMTDFDAE---GEYTEISFRVLCSKGTYIRTLCV 183
Query: 486 DFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
D G+ LG + + L R + +++E+
Sbjct: 184 DIGRKLGLPSVMVKLVRTISAGITEAQCLTLEQIEQ 219
>gi|288803048|ref|ZP_06408484.1| tRNA pseudouridine synthase B [Prevotella melaninogenica D18]
gi|288334565|gb|EFC73004.1| tRNA pseudouridine synthase B [Prevotella melaninogenica D18]
Length = 232
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 84/217 (38%), Positives = 125/217 (57%), Gaps = 5/217 (2%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVK-----KVGHAGTLDPMATGLLIVCVGKATKLV 363
G ++ ++KP G TSF +R L K+GHAGTLDP+ATG+LI+ GK TK +
Sbjct: 6 GVIIPIDKPYGITSFKALAHVRYLCTQANDGKVKIGHAGTLDPLATGVLILATGKMTKQI 65
Query: 364 DRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPM 423
+ Q K Y+ +LG T ++D + V + P EHI E I F G+I Q+PP
Sbjct: 66 ETLQTHTKEYTATLQLGATTPSYDMEHEVNETFPTEHITRELINATLPQFVGDIEQIPPT 125
Query: 424 FSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSL 483
+SA+KV G++ +D R+G+ + L P+ I I + ++ ++ L RV C KGTYIR+L
Sbjct: 126 YSAVKVDGKRAFDYRRKGKDVTLKPKNIRIDEIEVLDFDTEKMQLSIRVVCGKGTYIRAL 185
Query: 484 CADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELE 520
D G+A+ S A+LTALRR +G +D + + E
Sbjct: 186 ARDLGRAVNSGAYLTALRRTRVGDVRVEDCVNYDQFE 222
>gi|319637962|ref|ZP_07992728.1| tRNA pseudouridine synthase B [Neisseria mucosa C102]
gi|317401117|gb|EFV81772.1| tRNA pseudouridine synthase B [Neisseria mucosa C102]
Length = 304
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 90/215 (41%), Positives = 124/215 (57%), Gaps = 3/215 (1%)
Query: 307 PFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRY 366
P ++L++KP+G +S T K RRL + KK GH G LDP+ATGLL VC G+ATK
Sbjct: 9 PVNGVLLLDKPEGLSSNTALQKARRLFRAKKAGHTGVLDPLATGLLPVCFGEATKFAQYL 68
Query: 367 QGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSA 426
K Y+ +LGEA+ST DA+ +I + I + + A + G+I QVPPMFSA
Sbjct: 69 IDADKAYTATLKLGEASSTGDAEGEIIATARAD-ISLSEFQTACQALTGDIRQVPPMFSA 127
Query: 427 IKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCAD 486
+K G+ +Y+ AR+G IE R I+I+ DI D + V CSKGTYIR+L D
Sbjct: 128 LKHEGKPLYEYARKGIVIERKARDITIYSIDITEF--DAPKAVIDVRCSKGTYIRTLSED 185
Query: 487 FGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
K +G+ AHLTALRR ++ + + L E
Sbjct: 186 IAKHIGTFAHLTALRRTETAGFTIAQSHTLEALAE 220
>gi|83589901|ref|YP_429910.1| tRNA pseudouridine synthase B [Moorella thermoacetica ATCC 39073]
gi|91208083|sp|Q2RJM2.1|TRUB_MOOTA RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|83572815|gb|ABC19367.1| tRNA pseudouridine synthase B [Moorella thermoacetica ATCC 39073]
Length = 305
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 91/215 (42%), Positives = 125/215 (58%), Gaps = 2/215 (0%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
V KP G TS V LRRL+KVK++GH GTLDP+A G+L V VG AT+L++ QG K Y
Sbjct: 8 VLKPPGLTSHDVVQNLRRLLKVKRIGHGGTLDPLAAGVLPVAVGTATRLLEYLQGGDKAY 67
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEK 433
F LG T T D V+ R+P ++D++ A F G I QVPPM SA+ G +
Sbjct: 68 RAEFILGLKTDTQDLGGRVLARKPCPPFTEKDLQAATRPFTGTIRQVPPMVSAVHYQGRR 127
Query: 434 MYDKARRGESIELSPRRISIFQFDIERSLEDRQ--NLIFRVTCSKGTYIRSLCADFGKAL 491
+Y+ AR G +E R+++I +F + R+ D + +TCS+GTYIR+L AD+G L
Sbjct: 128 LYELAREGLEVERPARQVTIHEFRLIRAWPDGPYYRALIDITCSRGTYIRTLGADWGDYL 187
Query: 492 GSCAHLTALRRDSIGQYSADDAWEFKELEEAITKN 526
G A L L R G + DAW +E+ AI +
Sbjct: 188 GVGATLAFLLRTRAGSFRLTDAWTLEEIAGAIDRG 222
>gi|418245433|ref|ZP_12871838.1| tRNA pseudouridine synthase B [Corynebacterium glutamicum ATCC
14067]
gi|354510344|gb|EHE83268.1| tRNA pseudouridine synthase B [Corynebacterium glutamicum ATCC
14067]
Length = 297
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 90/229 (39%), Positives = 129/229 (56%), Gaps = 12/229 (5%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G TS V KLRR +KVGHAGTLDPMATG+L+V + + T+ +
Sbjct: 10 LVIVDKPAGMTSHDVVSKLRRAFSTRKVGHAGTLDPMATGVLVVGIERGTRFLAHMVAST 69
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y RLG ATST DA+ VI + I A+ G+I Q P SAIK+
Sbjct: 70 KAYDATIRLGAATSTDDAEGEVISTTDASGLDHSTILAEIANLTGDIMQKPTKVSAIKID 129
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQ--NLIFRVTCSKGTYIRSLCADFG 488
G++ +++ R GE +++ R +++ FD+ D + +L RV CS GTYIR+L D G
Sbjct: 130 GKRAHERVRDGEEVDIPARPVTVSVFDVLDYRVDGEFYDLDVRVHCSSGTYIRALARDLG 189
Query: 489 KALGSCAHLTALRRDSIGQYSADDAWEFKELEE----------AITKNY 527
AL HLTALRR +G ++ +DA +L+E A+T++Y
Sbjct: 190 NALQVGGHLTALRRTEVGPFTLNDATPLSKLQENPELSLNLDQALTRSY 238
>gi|429735736|ref|ZP_19269667.1| tRNA pseudouridine synthase B [Selenomonas sp. oral taxon 138 str.
F0429]
gi|429157084|gb|EKX99691.1| tRNA pseudouridine synthase B [Selenomonas sp. oral taxon 138 str.
F0429]
Length = 291
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 88/209 (42%), Positives = 124/209 (59%), Gaps = 1/209 (0%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
V KP G +S V +RR+ K K+VGHAGTLDP A G+L V +G+A +LV+ +G K Y
Sbjct: 7 VLKPTGLSSHDVIDIVRRIFKQKRVGHAGTLDPAAAGILPVALGRAARLVEYMEGADKSY 66
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHI-KDEDIRKAAASFRGEIWQVPPMFSAIKVGGE 432
G AT T D VI+ P + +E++R A F GEI Q PP +SAIK+GG+
Sbjct: 67 RAEIAFGYATDTGDVYGEVIESVPHPTLPTEEEMRAVLARFVGEIQQRPPAYSAIKIGGQ 126
Query: 433 KMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKALG 492
+ YD AR+G +E+ R ++I + ++ R+ ++ V C+KGTYIRSLC D G ALG
Sbjct: 127 RAYDLARQGAEVEIEARTVTIHRLELVHVDAVRRRILIDVDCAKGTYIRSLCTDIGTALG 186
Query: 493 SCAHLTALRRDSIGQYSADDAWEFKELEE 521
A + L R +G + DA+ +EL E
Sbjct: 187 LPATMHFLLRTRVGGFVLADAYTLEELAE 215
>gi|394994011|ref|ZP_10386747.1| tRNA pseudouridine synthase B [Bacillus sp. 916]
gi|393805090|gb|EJD66473.1| tRNA pseudouridine synthase B [Bacillus sp. 916]
Length = 309
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 89/218 (40%), Positives = 132/218 (60%), Gaps = 4/218 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L++KP G TS K+R+L+K KKVGH GTLDP +G+L +CVG+ATK+V+
Sbjct: 5 VLLLHKPVGMTSHDCVMKIRKLLKTKKVGHTGTLDPEVSGVLPICVGRATKIVEYVTDKS 64
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPW-EHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y LG +TST D + +P E +K+ DI+ +G QVPPM+SA+KV
Sbjct: 65 KTYDAEITLGFSTSTEDQTGETVSVKPVKEPLKEADIKAVLDELKGPQEQVPPMYSAVKV 124
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIERSL---EDRQNLIFRVTCSKGTYIRSLCAD 486
G+K+Y+ AR G +E R I+I + + ED + F VTCSKGTY+R+L
Sbjct: 125 KGKKLYEYARAGIEVERPKRNITIEDIALTSPVTYKEDTASFRFTVTCSKGTYVRTLAVT 184
Query: 487 FGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAIT 524
G+ LG AH++ L R + G +S D+ + F+ELE+ ++
Sbjct: 185 IGEKLGYPAHMSHLIRTASGDFSLDECFTFEELEQQVS 222
>gi|422851841|ref|ZP_16898511.1| tRNA pseudouridine synthase B [Streptococcus sanguinis SK150]
gi|325694319|gb|EGD36233.1| tRNA pseudouridine synthase B [Streptococcus sanguinis SK150]
Length = 292
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 91/222 (40%), Positives = 131/222 (59%), Gaps = 4/222 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ + K G TS KLR+++K KK+GH GTLDP G+L + VGKAT+LV+ Q
Sbjct: 4 IINLRKEAGMTSHDAVFKLRKILKTKKIGHGGTLDPDVVGVLPIAVGKATRLVEFMQEEG 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDED-IRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA +++R P + +E I + S GEI Q+PPM+SA+KV
Sbjct: 64 KVYEGEITLGCSTTTEDASGDLLERTPVTELLEEALIDETMESMTGEIRQIPPMYSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIERSL--EDRQ-NLIFRVTCSKGTYIRSLCAD 486
G K+Y+ AR G+ +E R+++I+ F+ + ED Q FRV CSKGTY+R+L D
Sbjct: 124 NGRKLYEYARAGQEVERPERQVTIYSFERTSPIAYEDEQARFRFRVKCSKGTYVRTLSVD 183
Query: 487 FGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAITKNYF 528
G LG +H++ L R S S DDA E+ E + + F
Sbjct: 184 LGAKLGFASHMSQLTRTSSAGMSLDDALTLDEIAERVAVDDF 225
>gi|198282697|ref|YP_002219018.1| tRNA pseudouridine synthase B [Acidithiobacillus ferrooxidans ATCC
53993]
gi|218665641|ref|YP_002424889.1| tRNA pseudouridine synthase B [Acidithiobacillus ferrooxidans ATCC
23270]
gi|415995482|ref|ZP_11560355.1| tRNA pseudouridine synthase B [Acidithiobacillus sp. GGI-221]
gi|198247218|gb|ACH82811.1| tRNA pseudouridine synthase B [Acidithiobacillus ferrooxidans ATCC
53993]
gi|218517854|gb|ACK78440.1| tRNA pseudouridine synthase B [Acidithiobacillus ferrooxidans ATCC
23270]
gi|339835597|gb|EGQ63256.1| tRNA pseudouridine synthase B [Acidithiobacillus sp. GGI-221]
Length = 293
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 86/216 (39%), Positives = 127/216 (58%), Gaps = 3/216 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L++K G TS + +RL+ +KK GH G+LDP+ATGLL++ G+ATK+ D
Sbjct: 7 LLLLDKAAGLTSNAALQRAKRLLGLKKGGHTGSLDPIATGLLVLLFGEATKVSDYILNAD 66
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y RLG+ T+T D++ V++ P + + ++ F GEI Q+PPM+SAIK G
Sbjct: 67 KSYRATLRLGQTTTTGDSEGSVLEERPVA-VSEAQVQAVLPQFLGEIAQIPPMYSAIKQG 125
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKA 490
G +Y+ AR+G +E +PR++ I D+ DR L+ V CSKGTYIRSL D G A
Sbjct: 126 GRPLYELARKGLEVERAPRQVRIDALDLVSLDGDR--LVLDVRCSKGTYIRSLAVDIGAA 183
Query: 491 LGSCAHLTALRRDSIGQYSADDAWEFKELEEAITKN 526
LG AH+ LRR S G + A + L + + +
Sbjct: 184 LGCGAHVEGLRRTSTGPFDVAQALTLEGLADVLGRG 219
>gi|83749675|ref|ZP_00946656.1| tRNA pseudouridine synthase B [Ralstonia solanacearum UW551]
gi|207743360|ref|YP_002259752.1| trna pseudouridine synthase b (trna pseudouridine 55synthase)
(psi55 synthase) (trna-uridine isomerase) (trna
pseudouridylate synthase) protein [Ralstonia
solanacearum IPO1609]
gi|83723677|gb|EAP70874.1| tRNA pseudouridine synthase B [Ralstonia solanacearum UW551]
gi|206594757|emb|CAQ61684.1| trna pseudouridine synthase b (trna pseudouridine 55synthase)
(psi55 synthase) (trna-uridine isomerase) (trna
pseudouridylate synthase) protein [Ralstonia
solanacearum IPO1609]
Length = 314
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 93/214 (43%), Positives = 126/214 (58%), Gaps = 3/214 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L++KP GW+S + +RL+ KK GH GTLDP+ATGLL +C G+ATK
Sbjct: 20 VLLLDKPIGWSSNDALIRAKRLLWAKKAGHTGTLDPLATGLLPLCFGEATKFSQDLLEAD 79
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y V RLG TST DA+ V+ P + + A F GEI Q+PPM SA+K
Sbjct: 80 KTYETVVRLGIKTSTADAEGEVLSERPVA-VTPGQLHAAVGRFIGEIDQMPPMHSALKKD 138
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQ--NLIFRVTCSKGTYIRSLCADFG 488
G+ +Y+ AR G+++E + RR++I DI + D + RV CSKGTYIR+L D G
Sbjct: 139 GKPLYEYARAGQTVERAARRVTIRAIDILATDLDAAAPTVTLRVCCSKGTYIRTLGEDLG 198
Query: 489 KALGSCAHLTALRRDSIGQYSADDAWEFKELEEA 522
+ALG AHL ALRR +G + D A + LE A
Sbjct: 199 EALGCGAHLVALRRTQVGSLTLDGAVTLQALEAA 232
>gi|258511418|ref|YP_003184852.1| tRNA pseudouridine synthase B [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
gi|257478144|gb|ACV58463.1| tRNA pseudouridine synthase B [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
Length = 302
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 87/210 (41%), Positives = 126/210 (60%), Gaps = 2/210 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L++KP+G TS V ++RR + V++VGHAGTLDPMATGLL++CVG+ T+L++
Sbjct: 7 VLLIDKPQGMTSHDVVNRVRRKLGVRRVGHAGTLDPMATGLLMICVGRVTRLLEYLGQGD 66
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K YSG G T T DA+ V+ + + +R+AA GEI Q PP +SA+ +
Sbjct: 67 KDYSGTVVFGVGTDTDDAEGTVVAQASAAGLDLAAVRQAALRLTGEIRQRPPQYSAVHID 126
Query: 431 GEKMYDKARRGESIELSPR--RISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFG 488
G + YD AR+G+ +EL R R+ F D R + F V CSKGTY+R+LC D G
Sbjct: 127 GRRAYDLARQGKKVELPERTVRVQAFTLDEFRHEGELAVARFHVRCSKGTYVRALCRDLG 186
Query: 489 KALGSCAHLTALRRDSIGQYSADDAWEFKE 518
+G AH+ +LRR +IG +DA +
Sbjct: 187 ALVGLPAHMRSLRRLAIGSARVEDAISLDD 216
>gi|345874256|ref|ZP_08826070.1| hypothetical protein l11_01490 [Neisseria weaveri LMG 5135]
gi|417957820|ref|ZP_12600739.1| hypothetical protein l13_11480 [Neisseria weaveri ATCC 51223]
gi|343967884|gb|EGV36124.1| hypothetical protein l13_11480 [Neisseria weaveri ATCC 51223]
gi|343970529|gb|EGV38702.1| hypothetical protein l11_01490 [Neisseria weaveri LMG 5135]
Length = 301
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 89/211 (42%), Positives = 124/211 (58%), Gaps = 3/211 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L++KPK +S T K RRL +K GH G LDP+ATGLL VC G+ATK
Sbjct: 10 VLLLDKPKNLSSNTALQKARRLYAAEKAGHTGVLDPLATGLLPVCFGEATKFAQYLLDAD 69
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y+ +LGEAT+T DA+ V++ + I E+ + A + G I QVPPMFSA+K
Sbjct: 70 KAYTATLKLGEATTTGDAEGEVVETARAD-ITAEEFQTACQALTGNIRQVPPMFSALKHE 128
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKA 490
G+ +Y+ AR+G IE PR I+I+ +I D + V CSKGTYIR+L D K
Sbjct: 129 GKPLYEYARKGIVIERKPRNITIYSIEITEF--DAPKAVIDVRCSKGTYIRTLSEDIAKY 186
Query: 491 LGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
+G+ AHLT LRR +S ++ ++L E
Sbjct: 187 IGTFAHLTDLRRTETAGFSIGQSYTLEKLAE 217
>gi|164688515|ref|ZP_02212543.1| hypothetical protein CLOBAR_02160 [Clostridium bartlettii DSM
16795]
gi|164602928|gb|EDQ96393.1| tRNA pseudouridine synthase B [Clostridium bartlettii DSM 16795]
Length = 304
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 86/213 (40%), Positives = 134/213 (62%), Gaps = 4/213 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ + KP G TS V +RR + +KKVGH GTLDP A G+L +C+G+ATK+ +
Sbjct: 4 IINILKPTGMTSHDVVSCVRRTLNMKKVGHTGTLDPDAAGVLPICLGRATKVSELILNKD 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y LG T T+D+ ++ R +I++ IR+A S GEI Q+PP++SA+KV
Sbjct: 64 KSYICELTLGIETDTYDSSGTILYRNDDLNIEESKIREAFKSQEGEINQMPPVYSALKVN 123
Query: 431 GEKMYDKARRG--ESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFG 488
G+KM D AR+G +SI++ PR+++I + +I ++ + F V CSKGTY+RS+C D G
Sbjct: 124 GQKMCDLARKGKADSIDIKPRKVNIKKIEILNISNNK--ITFYVKCSKGTYVRSICHDIG 181
Query: 489 KALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
+ L H++ L R S G+++ D+A +ELE+
Sbjct: 182 EYLNCGGHMSFLLRTSSGKFNLDNAITLEELED 214
>gi|46201050|ref|ZP_00055819.2| COG0130: Pseudouridine synthase [Magnetospirillum magnetotacticum
MS-1]
Length = 311
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 88/215 (40%), Positives = 127/215 (59%), Gaps = 2/215 (0%)
Query: 307 PFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRY 366
P + ++KP G S V K++R++ KVGH GTLDP+A+G+L + +G+ATK V
Sbjct: 9 PVDGWLAIDKPLGIGSTQVVAKVKRILNAAKVGHGGTLDPLASGILPIALGEATKTVQYV 68
Query: 367 QGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSA 426
K Y R GEAT++ D +S VI+ P E I+ A F GEI Q+PP FSA
Sbjct: 69 MDGAKTYRFQLRWGEATASCDKESEVIETSPVRP-SAEAIQAALPGFVGEIDQIPPAFSA 127
Query: 427 IKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCAD 486
IK+ G++ YD AR G+ +E+ PRR++I F + D + F+V C KGTY+RSL D
Sbjct: 128 IKIDGQRAYDLARAGQEVEIKPRRVAIHSFTL-LGQPDSDHADFQVHCGKGTYVRSLARD 186
Query: 487 FGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
ALG+ H++ LRR + G ++ +A + LEE
Sbjct: 187 LALALGTVGHVSVLRRTACGPFTEQNAISLESLEE 221
>gi|421766857|ref|ZP_16203625.1| tRNA pseudouridine synthase B [Lactococcus garvieae DCC43]
gi|407624653|gb|EKF51388.1| tRNA pseudouridine synthase B [Lactococcus garvieae DCC43]
Length = 301
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 86/214 (40%), Positives = 128/214 (59%), Gaps = 4/214 (1%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
V K GWTSF V KLR ++K KK+GH GTLDP TG+L V VGKAT+L++ + K Y
Sbjct: 7 VYKEAGWTSFDVVAKLRGILKTKKIGHGGTLDPQVTGVLPVAVGKATRLLEYMEEAGKVY 66
Query: 374 SGVFRLGEATSTWDADSPVIQREPWE-HIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGE 432
G +G +T T DA+ VI+R + + +I +F GEI QVPPM+SA+KV G+
Sbjct: 67 EGEVTIGFSTETEDAEGAVIERTQVPLTLSESEIDACMRNFLGEIQQVPPMYSAVKVKGK 126
Query: 433 KMYDKARRGESIELSPRRISIFQFDIERSL---EDRQNLIFRVTCSKGTYIRSLCADFGK 489
++Y+ AR G+++E R+++I +F + D FRV CSKGTY+R+L D
Sbjct: 127 RLYEYARAGQTVERPIRKVTIKEFTRTSPVIFENDCARFTFRVACSKGTYVRTLAVDLSA 186
Query: 490 ALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
ALG H++ L+R + ++ +++EE +
Sbjct: 187 ALGYAGHMSKLQRTAANGLQITESLTLEQIEEYV 220
>gi|307708730|ref|ZP_07645193.1| tRNA pseudouridine synthase B [Streptococcus mitis NCTC 12261]
gi|307615304|gb|EFN94514.1| tRNA pseudouridine synthase B [Streptococcus mitis NCTC 12261]
Length = 292
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 89/217 (41%), Positives = 127/217 (58%), Gaps = 4/217 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ + K G TS KLR+++ KK+GH GTLDP G+L + VGKAT++V+ Q
Sbjct: 4 IINLKKEAGMTSHDAVFKLRKILGTKKIGHGGTLDPDVVGVLPIAVGKATRMVEFMQDEG 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDED-IRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V+ P DE + +A AS G I Q+PPM+SA+KV
Sbjct: 64 KVYEGKITLGYSTTTEDASGEVVAETPVLSPLDEKLVDEAIASLTGPITQIPPMYSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNL---IFRVTCSKGTYIRSLCAD 486
G K+Y+ AR G+ +E R+++I+QF+ + NL FRV CSKGTYIR+L D
Sbjct: 124 NGRKLYEYARAGQEVERPERQVTIYQFERTSPISYEGNLARFTFRVKCSKGTYIRTLSVD 183
Query: 487 FGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
G+ LG AH++ L R S +DA +E+ E +
Sbjct: 184 LGEKLGYAAHMSHLTRTSAAGLQLEDALTLEEIAEKV 220
>gi|309782261|ref|ZP_07676989.1| tRNA pseudouridine synthase B [Ralstonia sp. 5_7_47FAA]
gi|308918954|gb|EFP64623.1| tRNA pseudouridine synthase B [Ralstonia sp. 5_7_47FAA]
Length = 302
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 92/207 (44%), Positives = 128/207 (61%), Gaps = 7/207 (3%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L++KP GW+S + +RL+ KK GH GTLDP+ATGLL +C G+ATK
Sbjct: 4 VLLLDKPIGWSSNDALIRAKRLLWAKKAGHTGTLDPLATGLLPLCFGEATKFSQDLLDAD 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y V RLG TST DA+ V+ P + E ++ A A F GEI QVPPM SA+K
Sbjct: 64 KTYETVVRLGIRTSTADAEGEVLSERPVS-VTPERLQAAIARFVGEIDQVPPMHSALKKD 122
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQN----LIFRVTCSKGTYIRSLCAD 486
G+ +Y+ AR G+++E + RR++I+ D+ + D Q+ + RV+CSKGTYIR+L D
Sbjct: 123 GKPLYEYARAGQTVERAARRVTIYGIDLLAT--DLQSAEPTITLRVSCSKGTYIRTLGED 180
Query: 487 FGKALGSCAHLTALRRDSIGQYSADDA 513
G+ALG HL ALRR +G + D A
Sbjct: 181 IGEALGCGGHLVALRRTQVGNLTLDGA 207
>gi|306836341|ref|ZP_07469320.1| tRNA pseudouridine synthase B [Corynebacterium accolens ATCC 49726]
gi|304567776|gb|EFM43362.1| tRNA pseudouridine synthase B [Corynebacterium accolens ATCC 49726]
Length = 300
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 88/213 (41%), Positives = 124/213 (58%), Gaps = 2/213 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G TS V +LRR KKVGHAGTLDPMATG+L++ + + TK +
Sbjct: 13 LVIVDKPAGMTSHDVVNRLRRYFHTKKVGHAGTLDPMATGVLVLGIERGTKFLAHMVAST 72
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K YS RLG +T+T DA+ +P + I A+ GEI Q P SAIK+
Sbjct: 73 KSYSATIRLGASTTTDDAEGEFRWGKPAAALHRSAIEAEVAALTGEIMQKPAAVSAIKIK 132
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIE--RSLEDRQNLIFRVTCSKGTYIRSLCADFG 488
G++ ++ R G+ +++ R +++ FDI R+ D +L V CS GTYIRSL D G
Sbjct: 133 GKRAHELMREGKEVDIPARPVTVHSFDIHDLRAEGDFIDLDVSVECSSGTYIRSLARDMG 192
Query: 489 KALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
+ALG HLTALRR ++G ++ DA +L E
Sbjct: 193 EALGVGGHLTALRRTTVGPFALADAHMLDDLAE 225
>gi|332799227|ref|YP_004460726.1| tRNA pseudouridine synthase B [Tepidanaerobacter acetatoxydans Re1]
gi|438002355|ref|YP_007272098.1| tRNA pseudouridine synthase B [Tepidanaerobacter acetatoxydans Re1]
gi|332696962|gb|AEE91419.1| tRNA pseudouridine synthase B [Tepidanaerobacter acetatoxydans Re1]
gi|432179149|emb|CCP26122.1| tRNA pseudouridine synthase B [Tepidanaerobacter acetatoxydans Re1]
Length = 300
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 95/220 (43%), Positives = 133/220 (60%), Gaps = 11/220 (5%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
V KP G TS V LRRL+K+KK+GH+GTLDP ATG+L V +GKATK ++ + K Y
Sbjct: 7 VLKPAGMTSHDVINHLRRLLKIKKIGHSGTLDPAATGVLPVFIGKATKAIEFFMEDDKEY 66
Query: 374 SGVFRLGEATSTWDADSPVIQ--REPWE--HIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
RLG T T D +I+ P+ IK E++ K F GEI Q+PPM+SA+
Sbjct: 67 ISEMRLGVTTDTGDFQGNIIKIYNGPFNIGKIKFEEVLK---EFTGEIMQIPPMYSAVHY 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIERSLE-DRQNLIFRVTCSKGTYIRSLCADFG 488
G+K+Y+ AR+G ++E PR+I I+ D+ LE D ++ I V CSKGTYIR+LC D G
Sbjct: 124 KGKKLYELARQGITVERRPRKIYIYSIDL---LEFDEKSAIINVACSKGTYIRTLCEDIG 180
Query: 489 KALGSCAHLTALRRDSIGQYSADDAWEFKELEEAITKNYF 528
LG A L+ L R G + +D+ +E+++ + N F
Sbjct: 181 NKLGCGACLSDLIRTRSGSFKIEDSLTLEEIQQNLINNTF 220
>gi|315606289|ref|ZP_07881305.1| tRNA pseudouridine synthase B [Prevotella buccae ATCC 33574]
gi|402308652|ref|ZP_10827656.1| tRNA pseudouridine(55) synthase [Prevotella sp. MSX73]
gi|315251980|gb|EFU31953.1| tRNA pseudouridine synthase B [Prevotella buccae ATCC 33574]
gi|400375103|gb|EJP28013.1| tRNA pseudouridine(55) synthase [Prevotella sp. MSX73]
Length = 235
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 87/219 (39%), Positives = 125/219 (57%), Gaps = 6/219 (2%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVK------KVGHAGTLDPMATGLLIVCVGKATKL 362
G ++ ++KP +SF +R L+ K KVGHAGTLDP+ATG+L++C GK TK
Sbjct: 6 GEIICIDKPYRMSSFGALAHVRYLISQKMGVKRVKVGHAGTLDPLATGVLVLCTGKMTKN 65
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
+++ Q K Y+ +LG T+++D + V P HI E I + F GEI QVPP
Sbjct: 66 IEQLQYHTKEYTATLQLGATTASYDREHTVNATYPTGHITRELILETLPQFVGEIQQVPP 125
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRS 482
+SA KV G++ Y R G+ +EL P+ + I + ++ + RV C KGTYIR+
Sbjct: 126 SYSACKVNGDRAYKLRRNGKDVELQPKTLQIDEIELTGFDAGTMQMSIRVVCGKGTYIRA 185
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
L D G+ALGS A LTALRR +G+ ++ EF E
Sbjct: 186 LARDIGRALGSGAFLTALRRTRVGEVRVENCIEFDRFRE 224
>gi|443623721|ref|ZP_21108215.1| putative tRNA pseudouridine synthase B [Streptomyces
viridochromogenes Tue57]
gi|443342771|gb|ELS56919.1| putative tRNA pseudouridine synthase B [Streptomyces
viridochromogenes Tue57]
Length = 301
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 88/221 (39%), Positives = 126/221 (57%), Gaps = 7/221 (3%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G+TS V K+R + + ++VGHAGTLDPMATG+L++ V KATKL+
Sbjct: 11 LVIVDKPSGFTSHDVVAKMRGIARTRRVGHAGTLDPMATGVLVLGVEKATKLLGHLALTE 70
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y G RLG+ T T DA+ + + + + A G+I QVP SAIK+
Sbjct: 71 KEYLGTIRLGQTTLTDDAEGEITGSTDASKVTRDAVDAGIAKLTGDIMQVPSKVSAIKID 130
Query: 431 GEKMYDKARRGESIELSPRRISIFQF---DIERSLEDRQ----NLIFRVTCSKGTYIRSL 483
G + Y +AR GE E+ R +++ F D+ ++ D +L+ V CS GTYIR+L
Sbjct: 131 GVRSYKRAREGEDFEIPARPVTVSSFAVYDVRDAVADDGTQVLDLVVSVVCSSGTYIRAL 190
Query: 484 CADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAIT 524
D G LG HLTALRR +G Y D A +L++ +T
Sbjct: 191 ARDLGAGLGVGGHLTALRRTRVGPYKLDSAKTLDQLQQELT 231
>gi|344166909|emb|CCA79099.1| tRNA pseudouridine synthase B [blood disease bacterium R229]
Length = 311
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 94/214 (43%), Positives = 127/214 (59%), Gaps = 3/214 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L++KP GW+S + +RL+ +K GH GTLDP+ATGLL +C G+ATK
Sbjct: 17 VLLLDKPIGWSSNDALIRAKRLLWARKAGHTGTLDPLATGLLPLCFGEATKFSQDLLEAD 76
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y V RLG TST DA+ V+ E + E +R A F GEI QVPPM SA+K
Sbjct: 77 KTYETVVRLGIKTSTADAEGEVLS-ERSVAVTPEQLRTAIGRFIGEIDQVPPMHSALKKD 135
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQ--NLIFRVTCSKGTYIRSLCADFG 488
G+ +Y+ AR G+++E + RR++I DI + D + RV CSKGTYIR+L D G
Sbjct: 136 GKPLYEYARAGQTVERAARRVTIRAIDILATDLDAAAPTVTLRVCCSKGTYIRTLGEDLG 195
Query: 489 KALGSCAHLTALRRDSIGQYSADDAWEFKELEEA 522
+ LG AHL ALRR +G + D A + LE A
Sbjct: 196 EVLGCGAHLVALRRTQVGSLTLDGAVTLEALEAA 229
>gi|308234655|ref|ZP_07665392.1| tRNA pseudouridine synthase B [Gardnerella vaginalis ATCC 14018 =
JCM 11026]
Length = 336
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 96/227 (42%), Positives = 129/227 (56%), Gaps = 23/227 (10%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++LV+KPKG TS V R L+ K+VGHAGTLDPMATGLLI+ G AT+L++ G
Sbjct: 11 ILLVDKPKGVTSHDVVSCARGLLHTKRVGHAGTLDPMATGLLILGFGNATRLLNYLLGHD 70
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHI------KDEDIRK----AAASFRGEIWQV 420
K Y V RLGE+T+T DAD V+ E+ DE +++ A +F G I Q
Sbjct: 71 KTYEAVIRLGESTNTDDADGDVVSSVDDENSILNSANTDEILKELRCVIAKNFTGHIMQT 130
Query: 421 PPMFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIF---------- 470
P FSAIK+ G + YD AR G+ + L PR + I F + L+ R N+
Sbjct: 131 PTAFSAIKINGVRAYDLAREGKDVHLEPREVVIHDFSL---LDARFNVGVSGAKVVDVRA 187
Query: 471 RVTCSKGTYIRSLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFK 517
++CS GTYIR+L D G+ LG HL +LRR IG++S +D K
Sbjct: 188 SISCSSGTYIRALARDLGRVLGVGGHLVSLRRTRIGEFSVEDDRVLK 234
>gi|451343588|ref|ZP_21912659.1| tRNA pseudouridine synthase B [Eggerthia catenaformis OT 569 = DSM
20559]
gi|449337685|gb|EMD16842.1| tRNA pseudouridine synthase B [Eggerthia catenaformis OT 569 = DSM
20559]
Length = 282
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 89/210 (42%), Positives = 127/210 (60%), Gaps = 4/210 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++VNK KG TS V R+ + KKVGHAGTLDP ATG+L++ V KATK + I
Sbjct: 8 IIVVNKEKGMTSHDVVNIARKALHTKKVGHAGTLDPDATGVLVLAVNKATKALQFLAADI 67
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y V LG AT ++D +I ++ E I ++ K SF+G+ Q+PP++SAIKV
Sbjct: 68 KEYKAVLSLGIATDSYDRSGRIIDQK--EFIGYTNLEKTIKSFKGDSMQMPPIYSAIKVN 125
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKA 490
G+K+Y+ AR E + + PR I I++ +I ++ + L RV CSKGTYIRSLC D K
Sbjct: 126 GKKLYEYARNNEYVRIEPRPIKIYEIEILKTYDHYIEL--RVLCSKGTYIRSLCFDIAKK 183
Query: 491 LGSCAHLTALRRDSIGQYSADDAWEFKELE 520
LG H+ AL R G ++ A ++L+
Sbjct: 184 LGYPGHMYALERTCSGHFTIAQACSIEQLK 213
>gi|410727058|ref|ZP_11365281.1| tRNA pseudouridine 55 synthase [Clostridium sp. Maddingley
MBC34-26]
gi|410599393|gb|EKQ53946.1| tRNA pseudouridine 55 synthase [Clostridium sp. Maddingley
MBC34-26]
Length = 327
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 86/223 (38%), Positives = 130/223 (58%), Gaps = 2/223 (0%)
Query: 305 DGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVD 364
+ P ++ + K KG +SF V K++ + KKVGH GTLDP ATG+L VC+GKATK++D
Sbjct: 34 NAPINGVLNIFKNKGMSSFDVVRKVKFIASEKKVGHTGTLDPQATGVLPVCIGKATKIID 93
Query: 365 RYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMF 424
K Y F LG T+T+D + +++++ EH+ ++++ + SF GE QVPPM+
Sbjct: 94 YIMNSNKVYDVKFLLGTKTTTYDLEGEIVEKKETEHLTEDEVSEIILSFIGEYDQVPPMY 153
Query: 425 SAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLC 484
SA+K G ++YD AR+G +E RR+ I F+I + + +V CSKGTYIRSLC
Sbjct: 154 SALKKNGVRLYDLARQGIEVEREARRVKI--FNISNIKLELPYVYMKVACSKGTYIRSLC 211
Query: 485 ADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAITKNY 527
D G+ L A +T L R + D++ L + +Y
Sbjct: 212 YDIGEKLKVGAVMTELNRSETSIFKQDNSVNIDNLTKENINDY 254
>gi|315648091|ref|ZP_07901192.1| tRNA pseudouridine synthase B [Paenibacillus vortex V453]
gi|315276737|gb|EFU40080.1| tRNA pseudouridine synthase B [Paenibacillus vortex V453]
Length = 303
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 83/216 (38%), Positives = 129/216 (59%), Gaps = 8/216 (3%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ V+KP GWTS V K+R ++++K++GH GTLDP TG+L +C+G+AT++V+ Q +
Sbjct: 7 ILAVHKPAGWTSHDVVAKVRGILRMKRIGHTGTLDPEVTGVLPLCLGRATRVVEYLQELP 66
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y V RLG +T T D V + H+ + +A SF G I QVPPM+SA+K+
Sbjct: 67 KEYHAVLRLGYSTDTEDITGSVTETADEVHVTKNEAIEALQSFMGPISQVPPMYSAVKIN 126
Query: 431 GEKMYDKARRGESIELSPRRISIFQ-----FDIERSLEDRQNLIFRVTCSKGTYIRSLCA 485
G+++Y+ AR G+++E R ++I + FD E D + FRV CSKGTYIR+LC
Sbjct: 127 GKRLYELAREGKTVERKSRTVTIHEIEMTDFDAEGEYTD---ISFRVLCSKGTYIRTLCV 183
Query: 486 DFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
D G+ LG + + L R + +++E+
Sbjct: 184 DIGRKLGLPSVMVKLERTVSAGITEQQCLTLEQIEQ 219
>gi|300691719|ref|YP_003752714.1| tRNA pseudouridine synthase B [Ralstonia solanacearum PSI07]
gi|299078779|emb|CBJ51439.1| tRNA pseudouridine synthase B [Ralstonia solanacearum PSI07]
Length = 311
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 94/214 (43%), Positives = 127/214 (59%), Gaps = 3/214 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L++KP GW+S + +RL+ +K GH GTLDP+ATGLL +C G+ATK
Sbjct: 17 VLLLDKPIGWSSNDALIRAKRLLWARKAGHTGTLDPLATGLLPLCFGEATKFSQDLLEAD 76
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y V RLG TST DA+ V+ E + E +R A F GEI QVPPM SA+K
Sbjct: 77 KTYETVVRLGIKTSTADAEGEVLS-ERSVAVTPEQLRTAIGRFIGEIDQVPPMHSALKKD 135
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQ--NLIFRVTCSKGTYIRSLCADFG 488
G+ +Y+ AR G+++E + RR++I DI + D + RV CSKGTYIR+L D G
Sbjct: 136 GKPLYEYARAGQTVERAARRVTIRAIDILATDLDAAAPTVTLRVCCSKGTYIRTLGEDLG 195
Query: 489 KALGSCAHLTALRRDSIGQYSADDAWEFKELEEA 522
+ LG AHL ALRR +G + D A + LE A
Sbjct: 196 EVLGCGAHLVALRRTQVGSLTLDGAVTLEALEAA 229
>gi|408790575|ref|ZP_11202193.1| tRNA pseudouridine synthase B [Lactobacillus florum 2F]
gi|408520122|gb|EKK20216.1| tRNA pseudouridine synthase B [Lactobacillus florum 2F]
Length = 303
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 88/218 (40%), Positives = 125/218 (57%), Gaps = 6/218 (2%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ +NKP G TSF ++R L K+VGH+GTLDP G+L +C+G ATKLVD
Sbjct: 5 IIPLNKPVGMTSFDCVSRIRHLYNQKRVGHSGTLDPNVNGVLPICLGYATKLVDNLMATG 64
Query: 371 KGYSGVFRLGEATSTWDADSPVIQRE-PWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG AT+T D D +I + ++ + D+ I F G+ Q+PPM+SA+KV
Sbjct: 65 KIYQGAITLGFATTTEDLDGTIIATDFDFKPLTDQQINNGFQHFLGDTIQIPPMYSAVKV 124
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIERS-----LEDRQNLIFRVTCSKGTYIRSLC 484
G ++YD AR GE++E R+I I F + + Q + F V CSKGTY+R+L
Sbjct: 125 KGRRLYDYARHGETVERPRRQIKITNFQQRCASWIDPISKTQTIYFTVHCSKGTYVRTLA 184
Query: 485 ADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEA 522
DFGK G A +T L R G ++ + +ELE+A
Sbjct: 185 VDFGKYFGVPAVMTQLTRMMSGGFTLAETVTLEELEQA 222
>gi|167772652|ref|ZP_02444705.1| hypothetical protein ANACOL_04033 [Anaerotruncus colihominis DSM
17241]
gi|167665130|gb|EDS09260.1| tRNA pseudouridine synthase B [Anaerotruncus colihominis DSM 17241]
Length = 300
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 89/223 (39%), Positives = 127/223 (56%), Gaps = 7/223 (3%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQG 368
G ++ ++KP+G+TSF V KLR + + ++VGHAGTLDPMATG+L + G+ATK D
Sbjct: 5 GGILCIDKPEGFTSFDVVAKLRGIARERRVGHAGTLDPMATGVLPLFFGRATKACDILPR 64
Query: 369 MIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDED---IRKAAASFRGEIWQVPPMFS 425
K Y F+LG T T D V+ E D D +R AAA G+I Q PPM+S
Sbjct: 65 QDKRYLASFKLGVTTDTQDITGTVLS----EQTPDADEARVRAAAAGLVGDIMQTPPMYS 120
Query: 426 AIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCA 485
A++V G+++Y+ ARRG +E + R ++++ D V CSKGTYIR+L A
Sbjct: 121 AVRVNGQRLYELARRGVEVERAARPVTVYSIDFTACDVQANTFTIDVHCSKGTYIRTLIA 180
Query: 486 DFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAITKNYF 528
D G ALG A +TALRR ++ D ++ ++A F
Sbjct: 181 DIGAALGCGAVMTALRRTMAASFTLADCVTIEQAQQAAQDGVF 223
>gi|345884634|ref|ZP_08836038.1| tRNA pseudouridine synthase B [Prevotella sp. C561]
gi|345042627|gb|EGW46723.1| tRNA pseudouridine synthase B [Prevotella sp. C561]
Length = 232
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 85/217 (39%), Positives = 125/217 (57%), Gaps = 5/217 (2%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVK-----KVGHAGTLDPMATGLLIVCVGKATKLV 363
G ++ ++KP G TSF +R L K+GHAGTLDP+ATG+LI+ GK TK +
Sbjct: 6 GVIIPIDKPYGITSFKALAHVRYLCTQANDGKVKIGHAGTLDPLATGVLILATGKMTKQI 65
Query: 364 DRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPM 423
+ Q K Y+ +LG T ++D + V + P EHI E I F G+I Q+PP
Sbjct: 66 ETLQTHTKEYTATLQLGATTPSYDMEHEVNENFPTEHITRELIDATLPQFVGDIEQIPPT 125
Query: 424 FSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSL 483
+SA+KV G++ +D R+G+ + L P+ I I + +I ++ L RV C KGTYIR+L
Sbjct: 126 YSAVKVDGKRAFDYRRKGKEVTLKPKNIRIDEIEILDFDVEKMQLSIRVVCGKGTYIRAL 185
Query: 484 CADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELE 520
D G+AL S A+LTALRR +G +D + + +
Sbjct: 186 ARDLGRALNSGAYLTALRRTRVGDVRVEDCVNYDQFD 222
>gi|303236075|ref|ZP_07322678.1| tRNA pseudouridine synthase B [Prevotella disiens FB035-09AN]
gi|302483948|gb|EFL46940.1| tRNA pseudouridine synthase B [Prevotella disiens FB035-09AN]
Length = 232
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 83/218 (38%), Positives = 124/218 (56%), Gaps = 5/218 (2%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVK-----KVGHAGTLDPMATGLLIVCVGKATKLV 363
G ++ ++KP G TSF +R L K+GHAGTLDP+ATG+LI+ GK TK +
Sbjct: 6 GVIIPIDKPYGITSFKALAHVRYLCSQAQGGRVKIGHAGTLDPLATGILILATGKMTKQI 65
Query: 364 DRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPM 423
+ Q K Y +LG T ++D + ++ P EHI E I + F G+I Q+PP
Sbjct: 66 ENLQTHTKEYVATMQLGATTPSYDMEHEENEKFPTEHITRELIEEKLQHFVGDIEQIPPT 125
Query: 424 FSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSL 483
+SA+KV G++ +D RRG+ + L P++I I + +I ++ L RV C KGTYIR+L
Sbjct: 126 YSAVKVNGQRAFDYRRRGDDVVLKPKKIRIDEIEIISFDNEKMQLTVRVVCGKGTYIRAL 185
Query: 484 CADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
D G+ L S A+L ALRR +G+ + + +E
Sbjct: 186 ARDLGRTLNSGAYLVALRRTQVGEIKVEQCVNYDHFQE 223
>gi|261364590|ref|ZP_05977473.1| tRNA pseudouridine synthase B [Neisseria mucosa ATCC 25996]
gi|288567174|gb|EFC88734.1| tRNA pseudouridine synthase B [Neisseria mucosa ATCC 25996]
Length = 304
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 90/215 (41%), Positives = 125/215 (58%), Gaps = 3/215 (1%)
Query: 307 PFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRY 366
P ++L++KP+G +S T K RRL +K GH G LDP+ATGLL VC G+ATK
Sbjct: 9 PVNGVLLLDKPEGLSSNTSLQKARRLYNAEKAGHTGVLDPLATGLLPVCFGEATKFAQYL 68
Query: 367 QGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSA 426
K Y+ +LGEA+ST DA+ +I + I + + A + G+I QVPPMFSA
Sbjct: 69 LDADKAYTATLKLGEASSTGDAEGEIIATARAD-ISLAEFQTACQALTGDIRQVPPMFSA 127
Query: 427 IKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCAD 486
+K G+ +Y+ AR+G IE PR I+I+ DI D + V CSKGTYIR+L D
Sbjct: 128 LKHEGKPLYEYARKGIVIERKPRDITIYAIDITEF--DAPKAVIDVRCSKGTYIRTLSED 185
Query: 487 FGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
K +G+ AHLTALRR ++ ++ + L E
Sbjct: 186 IAKHIGTFAHLTALRRTETAGFTIRESHTLEALAE 220
>gi|422823810|ref|ZP_16871998.1| tRNA pseudouridine synthase B [Streptococcus sanguinis SK405]
gi|422826124|ref|ZP_16874303.1| tRNA pseudouridine synthase B [Streptococcus sanguinis SK678]
gi|422855744|ref|ZP_16902402.1| tRNA pseudouridine synthase B [Streptococcus sanguinis SK1]
gi|422862832|ref|ZP_16909464.1| tRNA pseudouridine synthase B [Streptococcus sanguinis SK408]
gi|422865718|ref|ZP_16912343.1| tRNA pseudouridine synthase B [Streptococcus sanguinis SK1058]
gi|324993137|gb|EGC25057.1| tRNA pseudouridine synthase B [Streptococcus sanguinis SK405]
gi|324995560|gb|EGC27472.1| tRNA pseudouridine synthase B [Streptococcus sanguinis SK678]
gi|327461405|gb|EGF07736.1| tRNA pseudouridine synthase B [Streptococcus sanguinis SK1]
gi|327474040|gb|EGF19453.1| tRNA pseudouridine synthase B [Streptococcus sanguinis SK408]
gi|327489263|gb|EGF21056.1| tRNA pseudouridine synthase B [Streptococcus sanguinis SK1058]
Length = 292
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 88/218 (40%), Positives = 129/218 (59%), Gaps = 4/218 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ + K G TS KLR+++K KK+GH GTLDP G+L + VGKAT+LV+ Q
Sbjct: 4 IINLRKEAGMTSHDAVFKLRKILKTKKIGHGGTLDPDVVGVLPIAVGKATRLVEFMQEEG 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDED-IRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA +++R P + +E I +A S GEI Q+PPM+SA+KV
Sbjct: 64 KVYEGEITLGCSTTTEDASGDLLERTPVTELLEEALIDEAMESMTGEIRQIPPMYSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIERSLE---DRQNLIFRVTCSKGTYIRSLCAD 486
G K+Y+ AR G+ +E R+++I+ F+ + ++ FRV CSKGTY+R+L D
Sbjct: 124 NGRKLYEYARAGQEVERPERQVTIYSFERTSPVSYEGEQARFCFRVKCSKGTYVRTLSVD 183
Query: 487 FGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAIT 524
G LG +H++ L R S S DDA E+ E +
Sbjct: 184 LGAKLGFASHMSQLTRTSSAGMSLDDALTLDEIAERVA 221
>gi|440778346|ref|ZP_20957110.1| tRNA pseudouridine synthase B [Mycobacterium avium subsp.
paratuberculosis S5]
gi|436721322|gb|ELP45465.1| tRNA pseudouridine synthase B [Mycobacterium avium subsp.
paratuberculosis S5]
Length = 279
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 86/204 (42%), Positives = 121/204 (59%), Gaps = 2/204 (0%)
Query: 320 WTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSGVFRL 379
TS V G+ RR+ ++VGHAGTLDPMATG+L++ V +ATK++ K YS RL
Sbjct: 1 MTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVLGVERATKILGLLTAAAKSYSATIRL 60
Query: 380 GEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEKMYDKAR 439
G+ATST DA+ V + H+ + I A RG+I QVP SAIKV G++ Y R
Sbjct: 61 GQATSTDDAEGDVARSVDARHLTSQAIEAAVGGLRGDIHQVPSTVSAIKVAGKRAYKLVR 120
Query: 440 RGESIELSPRRISIFQFDIE--RSLEDRQNLIFRVTCSKGTYIRSLCADFGKALGSCAHL 497
G+++EL R + I +F++ R+ ++ V CS GTY+R+L D G ALG HL
Sbjct: 121 EGQAVELPARPVRIDRFEVRGLRAAGACVDVDVEVDCSSGTYVRALARDLGAALGVGGHL 180
Query: 498 TALRRDSIGQYSADDAWEFKELEE 521
TALRR +G++ + A+ EL E
Sbjct: 181 TALRRTRVGRFGLEQAYGLDELAE 204
>gi|325299410|ref|YP_004259327.1| tRNA pseudouridine synthase B [Bacteroides salanitronis DSM 18170]
gi|324318963|gb|ADY36854.1| tRNA pseudouridine synthase B [Bacteroides salanitronis DSM 18170]
Length = 231
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 88/218 (40%), Positives = 130/218 (59%), Gaps = 8/218 (3%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR----RLVKVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G ++ +KP WTSF + K+R R + VKK VGHAGTLDP+ATG++I+C GKATK
Sbjct: 6 GEVLYFDKPYRWTSFALVNKIRYHISRKLGVKKIKVGHAGTLDPLATGVMIICTGKATKR 65
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ +Q K Y +LG T ++D + + P EHI E + + F G I Q+PP
Sbjct: 66 IEEFQYHTKEYVATLQLGATTPSYDLEKEIDATYPTEHITRELVEETLQRFVGAIEQIPP 125
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRS 482
FSA KV G++ Y+ AR+G+ ++L P+ + I + ++ + + RV CSKGTYIR+
Sbjct: 126 AFSACKVDGKRAYELARKGDEVQLKPKTLVIDEIELLEC--NLPEIKIRVVCSKGTYIRA 183
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELE 520
L D G+AL S AHLT L R +G +D + ++ E
Sbjct: 184 LARDIGEALHSGAHLTGLIRTRVGDIVLEDCMKVEDFE 221
>gi|419796040|ref|ZP_14321611.1| tRNA pseudouridine(55) synthase [Neisseria sicca VK64]
gi|385699891|gb|EIG30157.1| tRNA pseudouridine(55) synthase [Neisseria sicca VK64]
Length = 304
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 90/215 (41%), Positives = 124/215 (57%), Gaps = 3/215 (1%)
Query: 307 PFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRY 366
P ++L++KP+G +S T K RRL +K GH G LDP+ATGLL VC G+ATK
Sbjct: 9 PVNGVLLLDKPEGLSSNTALQKARRLYNAEKAGHTGVLDPLATGLLPVCFGEATKFAQYL 68
Query: 367 QGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSA 426
K Y+ +LGEA+ST DA+ +I + I + + A + G I QVPPMFSA
Sbjct: 69 LDADKAYTATLKLGEASSTGDAEGEIIATARAD-ISLAEFQTACQALTGNIRQVPPMFSA 127
Query: 427 IKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCAD 486
+K G+ +Y+ AR+G IE PR I+I+ DI D + V CSKGTYIR+L D
Sbjct: 128 LKHEGKPLYEYARKGIVIERKPRDITIYAIDITEF--DAPKAVIDVRCSKGTYIRTLSED 185
Query: 487 FGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
K +G+ AHLTALRR ++ ++ + L E
Sbjct: 186 IAKHIGTFAHLTALRRTETAGFTIRESHTLEALAE 220
>gi|227503416|ref|ZP_03933465.1| tRNA pseudouridine synthase B [Corynebacterium accolens ATCC 49725]
gi|227075919|gb|EEI13882.1| tRNA pseudouridine synthase B [Corynebacterium accolens ATCC 49725]
Length = 297
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 88/213 (41%), Positives = 124/213 (58%), Gaps = 2/213 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G TS V +LRR KKVGHAGTLDPMATG+L++ + + TK +
Sbjct: 10 LVIVDKPAGMTSHDVVSRLRRYFHTKKVGHAGTLDPMATGVLVLGIERGTKFLAHMVAST 69
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K YS RLG +T+T DA+ +P + I A+ G+I Q P SAIK+
Sbjct: 70 KSYSATIRLGASTTTDDAEGEFRWGKPAAALHRSAIEAEVAALTGDIMQKPAAVSAIKIK 129
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIE--RSLEDRQNLIFRVTCSKGTYIRSLCADFG 488
G++ ++ R G+ +++ R ++I FDI R+ D +L V CS GTYIRSL D G
Sbjct: 130 GKRAHELVREGKEVDIPARPVTIHSFDIHDLRTEGDFVDLDVSVECSSGTYIRSLARDMG 189
Query: 489 KALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
+ALG HLTALRR ++G ++ DA +L E
Sbjct: 190 EALGVGGHLTALRRTTVGPFALADAHMLDDLAE 222
>gi|443490338|ref|YP_007368485.1| tRNA pseudouridine synthase B TruB [Mycobacterium liflandii 128FXT]
gi|442582835|gb|AGC61978.1| tRNA pseudouridine synthase B TruB [Mycobacterium liflandii 128FXT]
Length = 301
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 91/220 (41%), Positives = 126/220 (57%), Gaps = 4/220 (1%)
Query: 306 GP-FG-TMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLV 363
GP FG +V+V+KP TS V G+ RR+ ++VGHAGTLDPMATG+L++ + +ATK++
Sbjct: 7 GPGFGPGIVVVDKPGAMTSHDVVGRCRRIFGTRRVGHAGTLDPMATGVLVIGIERATKIL 66
Query: 364 DRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPM 423
K Y+ RLG+ TST DA+ + EH+ E I A G+I QVP
Sbjct: 67 GLLTATSKSYAATIRLGQTTSTEDAEGEPLASVSAEHVAPEAIAAAILDLTGDIRQVPSA 126
Query: 424 FSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIE--RSLEDRQNLIFRVTCSKGTYIR 481
SAIKV G + Y AR G+++EL+ R + I +F++ R D ++ V CS GTYIR
Sbjct: 127 VSAIKVDGRRAYQLAREGQTVELAARPVRIDRFELMDLRRGADVIDIDVEVDCSSGTYIR 186
Query: 482 SLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
+L D G AL HLT+LRR + + A EL E
Sbjct: 187 ALARDLGAALDVGGHLTSLRRTRVSHFDLSQAASLDELAE 226
>gi|336427125|ref|ZP_08607129.1| hypothetical protein HMPREF0994_03135 [Lachnospiraceae bacterium
3_1_57FAA_CT1]
gi|336009978|gb|EGN39965.1| hypothetical protein HMPREF0994_03135 [Lachnospiraceae bacterium
3_1_57FAA_CT1]
Length = 298
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 88/207 (42%), Positives = 122/207 (58%), Gaps = 3/207 (1%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
V K G+TS V KLR + + KK+GH GTLDP A G+L VC+G AT+L D K Y
Sbjct: 8 VYKEAGYTSHDVVAKLRGICRQKKIGHTGTLDPDAVGVLPVCLGNATRLCDMLTDKSKEY 67
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEK 433
V LG+ T T D V++ P +++E +A SF G Q+PPM+SA+KV G+K
Sbjct: 68 EAVLLLGKVTDTQDISGKVLEEHPV-LMEEEQAVEAVLSFLGSYEQIPPMYSALKVNGKK 126
Query: 434 MYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKALGS 493
+Y+ AR G+ +E + R + I + DI + FRV CSKGTYIR+LC D G+ LG
Sbjct: 127 LYELARAGKEVERAGRPVEIHRIDILSV--ALPEITFRVACSKGTYIRTLCHDIGRKLGC 184
Query: 494 CAHLTALRRDSIGQYSADDAWEFKELE 520
+ +L+R +G ++ DDA ELE
Sbjct: 185 GGTMKSLKRTRVGTFAIDDALPLGELE 211
>gi|334880366|emb|CCB81092.1| tRNA pseudouridine synthase B [Lactobacillus pentosus MP-10]
gi|339639030|emb|CCC18241.1| tRNA pseudouridine synthase B [Lactobacillus pentosus IG1]
Length = 307
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 89/210 (42%), Positives = 122/210 (58%), Gaps = 6/210 (2%)
Query: 316 KPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSG 375
KP+G TSF K+RRL + +KVGH+GTLDP G+L +C+G ATK+V K Y G
Sbjct: 10 KPRGMTSFDCVAKIRRLYQTRKVGHSGTLDPNVDGVLPICIGNATKVVQFLVASGKEYQG 69
Query: 376 VFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEKM 434
LG AT+T D D I R+ + D I A A G+I Q+PPMFSA+KV G ++
Sbjct: 70 SITLGFATTTEDLDGDEIARQAVDAPFSDAAIDDALAQMTGDITQIPPMFSAVKVNGRRL 129
Query: 435 YDKARRGESIELSPRRISIFQFDIER-----SLEDRQNLIFRVTCSKGTYIRSLCADFGK 489
YD AR GE++E R ++I F + S Q + F V CSKGTY+R+L D G+
Sbjct: 130 YDYARHGETVERPQRHVTITSFKQRQPATYDSEAKTQTIYFTVACSKGTYVRTLAVDVGR 189
Query: 490 ALGSCAHLTALRRDSIGQYSADDAWEFKEL 519
ALG A ++ L R G ++ D+ F+E+
Sbjct: 190 ALGVPAVMSDLTRLKSGGFTLDETVTFEEI 219
>gi|392949051|ref|ZP_10314648.1| tRNA pseudouridine synthase B [Lactobacillus pentosus KCA1]
gi|392435769|gb|EIW13696.1| tRNA pseudouridine synthase B [Lactobacillus pentosus KCA1]
Length = 307
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 90/210 (42%), Positives = 123/210 (58%), Gaps = 6/210 (2%)
Query: 316 KPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSG 375
KP+G TSF K+RRL + +KVGH+GTLDP G+L +C+G ATK+V K Y G
Sbjct: 10 KPRGMTSFDCVAKIRRLYQTRKVGHSGTLDPNVDGVLPICIGNATKVVQFLVASGKEYQG 69
Query: 376 VFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEKM 434
LG AT+T D D I R+ + D I A A GEI Q+PPMFSA+KV G ++
Sbjct: 70 SITLGFATTTEDLDGDEIARQAVDAPFSDAAIDAALAQMTGEITQIPPMFSAVKVNGRRL 129
Query: 435 YDKARRGESIELSPRRISIFQFDIER----SLEDR-QNLIFRVTCSKGTYIRSLCADFGK 489
YD AR GE++E R ++I F + LE + Q + F V CSKGTY+R+L D G+
Sbjct: 130 YDYARNGETVERPQRHVTITSFKQRQPATYDLEAKTQTIYFTVACSKGTYVRTLAVDVGR 189
Query: 490 ALGSCAHLTALRRDSIGQYSADDAWEFKEL 519
LG A ++ L R G ++ D+ F+E+
Sbjct: 190 VLGVPAVMSDLTRLKSGGFTLDETVTFEEI 219
>gi|302522229|ref|ZP_07274571.1| tRNA pseudouridine synthase B [Streptomyces sp. SPB78]
gi|318062238|ref|ZP_07980959.1| tRNA pseudouridine synthase B [Streptomyces sp. SA3_actG]
gi|318077165|ref|ZP_07984497.1| tRNA pseudouridine synthase B [Streptomyces sp. SA3_actF]
gi|302431124|gb|EFL02940.1| tRNA pseudouridine synthase B [Streptomyces sp. SPB78]
Length = 302
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 94/235 (40%), Positives = 131/235 (55%), Gaps = 11/235 (4%)
Query: 297 STELPPTWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCV 356
+T+ T DG +V+V+KP G+TS V K+R + ++VGHAGTLDPMATG+L++ V
Sbjct: 2 TTQRTTTPDG----LVIVDKPSGFTSHDVVAKMRGIAGTRRVGHAGTLDPMATGVLVLGV 57
Query: 357 GKATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGE 416
+ATKL+ K Y G RLG+ T T DA+ + + E I A G+
Sbjct: 58 QRATKLLGHLALTEKEYVGTIRLGQDTVTDDAEGEITSATDASGVAREAIDAEVAKLTGD 117
Query: 417 IWQVPPMFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDR-------QNLI 469
I QVP SAIK+ G++ Y +AR GE E+ R +++ F + + Q+L+
Sbjct: 118 ILQVPSKVSAIKIDGKRSYKRAREGEDFEIPARPVTVSSFLVHDVRPETAPDGTPVQDLL 177
Query: 470 FRVTCSKGTYIRSLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAIT 524
VTCS GTYIR+L D G ALG HLTALRR +G Y D A + +E +T
Sbjct: 178 VSVTCSSGTYIRALARDIGAALGVGGHLTALRRTRVGPYRLDVARTLDQHQEELT 232
>gi|290957016|ref|YP_003488198.1| tRNA pseudouridine synthase [Streptomyces scabiei 87.22]
gi|260646542|emb|CBG69639.1| putative tRNA pseudouridine synthase [Streptomyces scabiei 87.22]
Length = 304
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 90/221 (40%), Positives = 124/221 (56%), Gaps = 7/221 (3%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G+TS V K+R + + ++VGHAGTLDPMATG+L++ V KATKL+
Sbjct: 14 LVIVDKPSGFTSHDVVAKMRGIARTRRVGHAGTLDPMATGVLVLGVEKATKLLGHLALTE 73
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y G RLG+ T T DA+ + + + + A G I QVP SAIK+
Sbjct: 74 KEYLGTVRLGQTTLTDDAEGEITASVDASKVTRDAVDAGVAELTGRIMQVPSKVSAIKID 133
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDI----ERSLEDRQ---NLIFRVTCSKGTYIRSL 483
G + Y +AR GE E+ R ++I F + E ED +L+ V CS GTYIR+L
Sbjct: 134 GVRSYKRARDGEDFEIPARPVTISSFAVYDVREAVAEDGTPVLDLVVSVVCSSGTYIRAL 193
Query: 484 CADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAIT 524
D G LG HLTALRR +G Y D A +L++ +T
Sbjct: 194 ARDLGAGLGVGGHLTALRRTRVGPYKLDSARTLDQLQQELT 234
>gi|160880902|ref|YP_001559870.1| tRNA pseudouridine synthase B [Clostridium phytofermentans ISDg]
gi|189036466|sp|A9KNW1.1|TRUB_CLOPH RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|160429568|gb|ABX43131.1| tRNA pseudouridine synthase B [Clostridium phytofermentans ISDg]
Length = 307
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 92/219 (42%), Positives = 127/219 (57%), Gaps = 7/219 (3%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ V K KG+TSF VC KLR ++K KK+GH GTLDP A G+L VCVG ATKL D
Sbjct: 4 IINVYKEKGFTSFDVCAKLRGILKQKKIGHTGTLDPDAEGVLPVCVGNATKLCDLLTDKD 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y V LG T T D V++R D + + F Q+PPM+SAIKV
Sbjct: 64 KVYEAVLTLGIITDTEDMTGEVLERRLVTATYDR-VLEVVEQFTRTYDQIPPMYSAIKVN 122
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDI--ERSLEDRQNLI----FRVTCSKGTYIRSLC 484
G+K+Y+ AR+G+ IE PR ++I DI LE++ ++ RV+CSKGTYIRSLC
Sbjct: 123 GQKLYELARQGKVIERKPRTVTIHAIDILGVTPLEEQPEIVHEVRMRVSCSKGTYIRSLC 182
Query: 485 ADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
D G+AL + +L R + ++ ++ E+EE +
Sbjct: 183 RDIGEALQCGGCMKSLIRTQVSIFTLENTLRLAEIEECV 221
>gi|307704842|ref|ZP_07641736.1| tRNA pseudouridine synthase B [Streptococcus mitis SK597]
gi|307621618|gb|EFO00661.1| tRNA pseudouridine synthase B [Streptococcus mitis SK597]
Length = 292
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 90/215 (41%), Positives = 128/215 (59%), Gaps = 8/215 (3%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ + K G TS KLR+++ KK+GH GTLDP G+L + VGKAT++V+ Q
Sbjct: 4 IINLKKEAGMTSHDAVFKLRKILGTKKIGHGGTLDPDVVGVLPIAVGKATRMVEFMQDEG 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREP-WEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V+ P H+ ++ + +A AS G I Q+PPM+SA+KV
Sbjct: 64 KVYEGEITLGYSTTTEDASGEVVAETPVLSHLDEKLVDEAIASLTGPIIQIPPMYSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIER----SLEDR-QNLIFRVTCSKGTYIRSLC 484
G K+Y+ AR G+ +E R+++I+QF ER S ED FRV CSKGTYIR+L
Sbjct: 124 NGRKLYEYARAGQEVERPERQVTIYQF--ERTSPISYEDHLARFTFRVKCSKGTYIRTLS 181
Query: 485 ADFGKALGSCAHLTALRRDSIGQYSADDAWEFKEL 519
D G+ LG AH++ L R S +DA +E+
Sbjct: 182 VDLGEKLGYAAHMSHLTRTSAAGLQLEDALSLEEI 216
>gi|386086634|ref|YP_006002508.1| tRNA pseudouridine synthase B [Streptococcus thermophilus ND03]
gi|387909712|ref|YP_006340018.1| trNA pseudouridine synthase B [Streptococcus thermophilus
MN-ZLW-002]
gi|312278347|gb|ADQ63004.1| tRNA pseudouridine synthase B [Streptococcus thermophilus ND03]
gi|387574647|gb|AFJ83353.1| tRNA pseudouridine synthase B [Streptococcus thermophilus
MN-ZLW-002]
Length = 293
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 83/216 (38%), Positives = 126/216 (58%), Gaps = 3/216 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ + K G TS KLR+++ KK+GH GTLDP TG+L + VGKAT++++
Sbjct: 5 IINLKKEAGMTSHDAVFKLRKILHEKKIGHGGTLDPDVTGVLPIAVGKATRVIEYMTEAG 64
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y G +G +T+T DA V+Q P + + +A ASF GEI Q+PPM+SA+K+
Sbjct: 65 KVYEGEITIGFSTTTEDASGEVVQTTPITELDGATVDQAMASFEGEITQIPPMYSAVKIN 124
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLE---DRQNLIFRVTCSKGTYIRSLCADF 487
G+K+Y+ AR GE +E R++ I +F +E FRV CSKGTY+R+L D
Sbjct: 125 GKKLYEYARAGEEVERPQRQVKITEFVRTSPIELENGTARFTFRVACSKGTYVRTLSVDL 184
Query: 488 GKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
G LG +H++ALRR + + D + ++ E +
Sbjct: 185 GVKLGFASHMSALRRTASAGLTLDSSLTLSQISEMV 220
>gi|145593926|ref|YP_001158223.1| tRNA pseudouridine synthase B [Salinispora tropica CNB-440]
gi|145303263|gb|ABP53845.1| tRNA pseudouridine synthase B [Salinispora tropica CNB-440]
Length = 327
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 90/213 (42%), Positives = 134/213 (62%), Gaps = 3/213 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++V+KP G TS V ++RRL + ++VGH GTLDPMATG+L+V VG+AT+L+ G
Sbjct: 39 LIVVDKPGGMTSHDVVARVRRLARTRRVGHGGTLDPMATGVLVVGVGRATRLLTYVIGAG 98
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y+ RLG+AT T DA+ VI P + +E +R A A G + QVP SAIK+
Sbjct: 99 KSYTATIRLGQATVTDDAEGDVISSTPAGQVTEEAVRAALAVQTGTVDQVPSAVSAIKID 158
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDR---QNLIFRVTCSKGTYIRSLCADF 487
G++ Y + R G+S++L PRR++I + D+ D ++ VTCS GTY+R++ D
Sbjct: 159 GQRAYRRVRAGDSVDLPPRRVTISRLDMRALRHDEPDVVDVDVDVTCSSGTYVRAIARDT 218
Query: 488 GKALGSCAHLTALRRDSIGQYSADDAWEFKELE 520
G+ALG HL ALRR ++G ++ +A +LE
Sbjct: 219 GRALGVGGHLIALRRTAVGGFTLGEAATLGDLE 251
>gi|260905187|ref|ZP_05913509.1| tRNA pseudouridine synthase B [Brevibacterium linens BL2]
Length = 305
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 90/210 (42%), Positives = 125/210 (59%), Gaps = 7/210 (3%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++ +KP+G TS V ++RR +KVGHAGTLDPMATG+L++ +G+ TKL+ G+
Sbjct: 9 VIVCDKPQGLTSHGVVSRIRRWYGTRKVGHAGTLDPMATGVLVLGLGRGTKLLGYITGVS 68
Query: 371 KGYSGVFRLGEATSTWDADS-PVIQREP--WEHIKDEDIRKAAASFRGEIWQVPPMFSAI 427
K Y RLG AT T DADS P + EP + D+ I ++ RG I QVP SAI
Sbjct: 69 KTYLATIRLGSATPTDDADSEPDLFAEPAALSAVTDDGIAHGVSALRGSIDQVPSAVSAI 128
Query: 428 KVGGEKMYDKARRGESIELSPRRISIFQFDIERS----LEDRQNLIFRVTCSKGTYIRSL 483
KV G++ Y + R GE + L RR+ I F I + + ++ V CS GTY+R+L
Sbjct: 129 KVNGQRSYARVRAGEDVVLKARRVEISDFTILATRYSVAQGHIDVDVEVDCSSGTYVRAL 188
Query: 484 CADFGKALGSCAHLTALRRDSIGQYSADDA 513
D G +LG HLTALRR +G +S D+A
Sbjct: 189 ARDLGGSLGVYGHLTALRRTRVGAFSLDEA 218
>gi|291523280|emb|CBK81573.1| tRNA pseudouridine synthase B [Coprococcus catus GD/7]
Length = 306
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 91/218 (41%), Positives = 126/218 (57%), Gaps = 7/218 (3%)
Query: 304 WDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLV 363
+DG M+ V K KG+TS V KLR ++ KK+GH GTLDP ATG+L VC+GK TKL
Sbjct: 2 YDG----MINVCKEKGFTSHDVVAKLRGILHQKKIGHTGTLDPDATGVLPVCLGKGTKLC 57
Query: 364 DRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPM 423
D K Y V LG T T D ++ E ++ + ++R AA SF G+ Q+PPM
Sbjct: 58 DMITDRDKTYRAVMMLGRTTDTQDISGQILT-EKAVNVDEREVRDAAVSFVGDYMQIPPM 116
Query: 424 FSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSL 483
+SAIKV G+K+Y+ AR G+ +E R + I +I + V+CSKGTYIR+L
Sbjct: 117 YSAIKVDGKKLYELARAGQEVERKARHVVINALNITGI--QLPYVTMEVSCSKGTYIRTL 174
Query: 484 CADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
C D G+ LG A +T L R +G + AW +++E
Sbjct: 175 CQDIGEKLGCGACMTELVRLKVGAFDIAHAWTLAQIQE 212
>gi|350562798|ref|ZP_08931621.1| tRNA pseudouridine synthase B [Thioalkalimicrobium aerophilum AL3]
gi|349779664|gb|EGZ34005.1| tRNA pseudouridine synthase B [Thioalkalimicrobium aerophilum AL3]
Length = 318
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 91/209 (43%), Positives = 122/209 (58%), Gaps = 2/209 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+VLV+KP G TS V ++ + + KK GH+GTLDP ATGLL VC+G+ATK+
Sbjct: 14 IVLVDKPVGMTSTEVVKQVVKAYRAKKAGHSGTLDPFATGLLPVCLGEATKVSSMLLASD 73
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y LG+ T T D D VI+ P + E I + ASFRGEI QVPPM+S+IK
Sbjct: 74 KRYIATLDLGQKTDTGDHDGEVIESLPVPDLTAEMIEQVLASFRGEIAQVPPMYSSIKFE 133
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKA 490
G+ ++ AR+G IE PR ++I + + + + F V CSKGTYIR L A+ +A
Sbjct: 134 GKSLHVYARKGIEIEREPRNVTIHELKLLDF--NVAQIRFEVHCSKGTYIRVLGAEIAEA 191
Query: 491 LGSCAHLTALRRDSIGQYSADDAWEFKEL 519
LG+ HLTAL R G + A D E+
Sbjct: 192 LGTVGHLTALHRTQTGIFHAKDMRPLHEI 220
>gi|239991156|ref|ZP_04711820.1| tRNA pseudouridine synthase B [Streptomyces roseosporus NRRL 11379]
gi|291448153|ref|ZP_06587543.1| tRNA pseudouridine synthase B [Streptomyces roseosporus NRRL 15998]
gi|291351100|gb|EFE78004.1| tRNA pseudouridine synthase B [Streptomyces roseosporus NRRL 15998]
Length = 299
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 94/234 (40%), Positives = 129/234 (55%), Gaps = 11/234 (4%)
Query: 298 TELPPTWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVG 357
TE T DG +V+V+KP G+TS V K+R + + ++VGHAGTLDPMATG+L++ V
Sbjct: 2 TEQTTTPDG----LVIVDKPSGFTSHDVVAKMRGIARTRRVGHAGTLDPMATGVLVLGVQ 57
Query: 358 KATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEI 417
+ATKL+ K Y G RLG+ T T DA+ + + E I A+ G I
Sbjct: 58 RATKLLGHLALTEKEYLGTIRLGQDTITDDAEGEITSSTDASKVTREGIDAGVAALTGAI 117
Query: 418 WQVPPMFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDI----ERSLEDRQ---NLIF 470
QVP SAIK+ G++ Y + R GE E+ R +++ F + E ED +L+
Sbjct: 118 MQVPSKVSAIKIDGKRSYARVRGGEEFEIPARPVTVSSFRVYDVREAVAEDGTPVLDLVV 177
Query: 471 RVTCSKGTYIRSLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAIT 524
V CS GTYIR+L D G LG HLTALRR +G Y D A + +E +T
Sbjct: 178 SVVCSSGTYIRALARDLGAGLGVGGHLTALRRTRVGPYGLDAARTLDQHQEELT 231
>gi|377809701|ref|YP_005004922.1| tRNA pseudouridine synthase B [Pediococcus claussenii ATCC BAA-344]
gi|361056442|gb|AEV95246.1| tRNA pseudouridine synthase B [Pediococcus claussenii ATCC BAA-344]
Length = 299
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 94/219 (42%), Positives = 127/219 (57%), Gaps = 6/219 (2%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ +NK + TS V K+RR++ K+VGH+GTLDP G+LIVCVGKATK+ D
Sbjct: 4 IIPINKERKMTSHDVVAKIRRILHTKRVGHSGTLDPNVDGVLIVCVGKATKVSDYLMNSG 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T T D D VI + + DE++ K S GEI Q+PPM+SA+KV
Sbjct: 64 KIYRGKITLGFSTITEDLDGEVIASKVLKIPFTDEELAKTFNSLTGEIIQIPPMYSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQF-DIERSLEDR----QNLIFRVTCSKGTYIRSLC 484
G K+Y+ AR GE +E R +SI +F I +S D Q + F V CSKGTY+R+L
Sbjct: 124 NGRKLYEYARSGEEVERPQRMVSITEFHQIGKSEFDEKRGTQTIKFEVKCSKGTYVRTLA 183
Query: 485 ADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
DFGK LG A ++ L R S G + +L E +
Sbjct: 184 VDFGKKLGVPAVMSDLTRMSSGGFDLSHTITLNDLSEKV 222
>gi|325003063|ref|ZP_08124175.1| tRNA pseudouridine synthase B [Pseudonocardia sp. P1]
Length = 297
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 90/213 (42%), Positives = 134/213 (62%), Gaps = 6/213 (2%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+K +G TS V GKLRR++ +KVGHAGTLDPMATG+L+V + +ATKL+
Sbjct: 11 LVVVDKDRGPTSHDVVGKLRRIMGTRKVGHAGTLDPMATGVLVVGIERATKLLGHLSLDT 70
Query: 371 KGYSGVFRLGEATSTWDAD-SPVIQREPWEHIKDE-DIRKAAASFRGEIWQVPPMFSAIK 428
K Y+ RLG+AT T DA+ +PV +P + E ++R A A G+I QVP SA+K
Sbjct: 71 KAYTATVRLGQATDTDDAEGTPV--GDPVAVVAGEAEVRAAMAVLTGDIEQVPSAVSAVK 128
Query: 429 VGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQ--NLIFRVTCSKGTYIRSLCAD 486
+ G++ Y + R GE++E+ R +++ FD+ D +L V C+ GTY+R+L D
Sbjct: 129 IDGKRAYQRVRDGETVEIPARPVTVSAFDLRDLRRDGGFVDLDVVVECTSGTYVRALARD 188
Query: 487 FGKALGSCAHLTALRRDSIGQYSADDAWEFKEL 519
G ALG+ HLTALRR +G ++ + A ++L
Sbjct: 189 LGVALGAGGHLTALRRTRVGPFTLEHARTVEQL 221
>gi|451346961|ref|YP_007445592.1| tRNA pseudouridine synthase B [Bacillus amyloliquefaciens IT-45]
gi|449850719|gb|AGF27711.1| tRNA pseudouridine synthase B [Bacillus amyloliquefaciens IT-45]
Length = 309
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 88/218 (40%), Positives = 132/218 (60%), Gaps = 4/218 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L++KP G TS K+R+L+K KKVGH GTLDP +G+L +CVG+ATK+V+
Sbjct: 5 VLLLHKPVGMTSHDCVMKIRKLLKTKKVGHTGTLDPEVSGVLPICVGRATKIVEYVTDKS 64
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPW-EHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y LG +TST D + +P E +++ DI+ +G QVPPM+SA+KV
Sbjct: 65 KTYDAEITLGFSTSTEDQTGETVSVKPVREPLEEADIKAVLDKLKGPQEQVPPMYSAVKV 124
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIERSL---EDRQNLIFRVTCSKGTYIRSLCAD 486
G+K+Y+ AR G +E R I+I + + ED + F VTCSKGTY+R+L
Sbjct: 125 NGKKLYEYARAGIEVERPKRNITIEDIALTSPVTYNEDTASFRFTVTCSKGTYVRTLAVT 184
Query: 487 FGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAIT 524
G+ LG AH++ L R + G +S D+ + F+ELE+ ++
Sbjct: 185 IGEKLGYPAHMSHLIRTASGDFSLDECFTFEELEQQVS 222
>gi|350552892|ref|ZP_08922083.1| tRNA pseudouridine synthase B [Thiorhodospira sibirica ATCC 700588]
gi|349792710|gb|EGZ46561.1| tRNA pseudouridine synthase B [Thiorhodospira sibirica ATCC 700588]
Length = 307
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 86/210 (40%), Positives = 128/210 (60%), Gaps = 3/210 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+VL++KP G++S +++RL + +K GH G+LDP+ATG+L +C+G+ATK+
Sbjct: 16 IVLLDKPAGYSSNQALQRVKRLFRARKAGHTGSLDPLATGVLPICLGEATKVSGYLLDAD 75
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y V RLGEAT+T DA+ VI R P ++ + + A G + Q+PPM+SA+K
Sbjct: 76 KYYQAVCRLGEATTTGDAEGEVIARYPLPALEPAHVAQVFAGLHGPLEQIPPMYSALKHQ 135
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKA 490
G+++Y AR G +E +PR + I +E SL+ L F V CSKGTY+R+L + G
Sbjct: 136 GQRLYTLARAGREVERAPRCVQIHALTLE-SLQGPM-LSFSVHCSKGTYVRTLAEEIGAR 193
Query: 491 LG-SCAHLTALRRDSIGQYSADDAWEFKEL 519
LG AHLTALRR +GQ + + + L
Sbjct: 194 LGCGSAHLTALRRTGLGQLAQHTLYTLEAL 223
>gi|445377390|ref|ZP_21426671.1| tRNA pseudouridine synthase B [Streptococcus thermophilus MTCC
5460]
gi|445391529|ref|ZP_21428391.1| tRNA pseudouridine synthase B [Streptococcus thermophilus MTCC
5461]
gi|444749878|gb|ELW74746.1| tRNA pseudouridine synthase B [Streptococcus thermophilus MTCC
5461]
gi|444749972|gb|ELW74831.1| tRNA pseudouridine synthase B [Streptococcus thermophilus MTCC
5460]
Length = 293
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 83/216 (38%), Positives = 126/216 (58%), Gaps = 3/216 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ + K G TS KLR+++ KK+GH GTLDP TG+L + VGKAT++++
Sbjct: 5 IINLKKEAGMTSHDAVFKLRKILHEKKIGHGGTLDPDVTGVLPIAVGKATRVIEYMTEAG 64
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y G +G +T+T DA V+Q P + + +A ASF GEI Q+PPM+SA+K+
Sbjct: 65 KVYEGEITIGFSTTTEDASGEVVQTTPITELDGATVDQAMASFEGEITQIPPMYSAVKIN 124
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLE---DRQNLIFRVTCSKGTYIRSLCADF 487
G+K+Y+ AR GE +E R++ I +F +E FRV CSKGTY+R+L D
Sbjct: 125 GKKLYEYARAGEEVERPQRQVKITEFVRTSPIELENGTARFTFRVACSKGTYVRTLSVDL 184
Query: 488 GKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
G LG +H++ALRR + + D + ++ E +
Sbjct: 185 GVKLGFASHMSALRRTASAGLTLDSSLTLSQISEMV 220
>gi|365845293|ref|ZP_09386076.1| tRNA pseudouridine synthase B [Flavonifractor plautii ATCC 29863]
gi|364561186|gb|EHM39098.1| tRNA pseudouridine synthase B [Flavonifractor plautii ATCC 29863]
Length = 288
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 89/213 (41%), Positives = 135/213 (63%), Gaps = 4/213 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++++KP+ WTS VC K+R ++ ++VGHAGTLDPMATG+L V VG+AT+ V+
Sbjct: 5 IIVIDKPQEWTSMDVCAKIRGVLHERRVGHAGTLDPMATGVLPVFVGRATRAVEFASESE 64
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y +LG T+T D V++ P E + + A A+FRGEI Q+PPM+SA+K
Sbjct: 65 KEYIAGLKLGVVTNTQDTTGQVVEERPVEADR-AALEGALAAFRGEITQIPPMYSALKRD 123
Query: 431 GEKMYDKARRGESIELSPRRISIFQFD-IERSLEDRQNLIFRVTCSKGTYIRSLCADFGK 489
G+K+Y+ AR G+ +E +PR ++I + +E++ + L RV CSKGTY+R+LC D G
Sbjct: 124 GKKLYELARAGKEVERAPRPVTIHALEVVEQTGPNCYTL--RVRCSKGTYVRTLCHDIGA 181
Query: 490 ALGSCAHLTALRRDSIGQYSADDAWEFKELEEA 522
ALG ++ALRR +S +A + L +A
Sbjct: 182 ALGCGGCMSALRRTEAAGFSLAEAVPLEALLDA 214
>gi|375362311|ref|YP_005130350.1| tRNA pseudouridine synthase B [Bacillus amyloliquefaciens subsp.
plantarum CAU B946]
gi|421731662|ref|ZP_16170785.1| tRNA pseudouridine synthase B [Bacillus amyloliquefaciens subsp.
plantarum M27]
gi|371568305|emb|CCF05155.1| tRNA pseudouridine synthase B [Bacillus amyloliquefaciens subsp.
plantarum CAU B946]
gi|407073875|gb|EKE46865.1| tRNA pseudouridine synthase B [Bacillus amyloliquefaciens subsp.
plantarum M27]
Length = 309
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 88/218 (40%), Positives = 132/218 (60%), Gaps = 4/218 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L++KP G TS K+R+L+K KKVGH GTLDP +G+L +CVG+ATK+V+
Sbjct: 5 VLLLHKPVGMTSHDCVMKIRKLLKTKKVGHTGTLDPEVSGVLPICVGRATKIVEYVTDKS 64
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPW-EHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y LG +TST D + +P E +++ DI+ +G QVPPM+SA+KV
Sbjct: 65 KTYDAEITLGFSTSTEDQTGETVSVKPVREPLEEADIKAVLDELKGPQEQVPPMYSAVKV 124
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIERSL---EDRQNLIFRVTCSKGTYIRSLCAD 486
G+K+Y+ AR G +E R I+I + + ED + F VTCSKGTY+R+L
Sbjct: 125 NGKKLYEYARAGIEVERPKRNITIEDIALTSPVTYNEDTASFRFTVTCSKGTYVRTLAVT 184
Query: 487 FGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAIT 524
G+ LG AH++ L R + G +S D+ + F+ELE+ ++
Sbjct: 185 IGEKLGYPAHMSHLIRTASGDFSLDECFTFEELEQQVS 222
>gi|254974859|ref|ZP_05271331.1| tRNA pseudouridine synthase B [Clostridium difficile QCD-66c26]
gi|255092246|ref|ZP_05321724.1| tRNA pseudouridine synthase B [Clostridium difficile CIP 107932]
gi|255313986|ref|ZP_05355569.1| tRNA pseudouridine synthase B [Clostridium difficile QCD-76w55]
gi|255516666|ref|ZP_05384342.1| tRNA pseudouridine synthase B [Clostridium difficile QCD-97b34]
gi|255649765|ref|ZP_05396667.1| tRNA pseudouridine synthase B [Clostridium difficile QCD-37x79]
gi|260682921|ref|YP_003214206.1| tRNA pseudouridine synthase B [Clostridium difficile CD196]
gi|260686519|ref|YP_003217652.1| tRNA pseudouridine synthase B [Clostridium difficile R20291]
gi|306519870|ref|ZP_07406217.1| tRNA pseudouridine synthase B [Clostridium difficile QCD-32g58]
gi|384360509|ref|YP_006198361.1| tRNA pseudouridine synthase B [Clostridium difficile BI1]
gi|260209084|emb|CBA62234.1| tRNA pseudouridine synthase B [Clostridium difficile CD196]
gi|260212535|emb|CBE03491.1| tRNA pseudouridine synthase B [Clostridium difficile R20291]
Length = 301
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 87/213 (40%), Positives = 132/213 (61%), Gaps = 6/213 (2%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ + KP G TS V ++R+++ +KKVGH GTLDP A+G+L +C+GKATK+ +
Sbjct: 4 IISILKPTGMTSHDVVSRVRKILNIKKVGHTGTLDPDASGVLPICIGKATKVCEVILNKD 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y LG +T T+DA ++++ +EDI +A + RGEI Q+PP++SA+KV
Sbjct: 64 KSYICELTLGISTDTYDASGEILKKVDDFKFSNEDIERAFDTQRGEINQLPPIYSALKVN 123
Query: 431 GEKMYDKARRG--ESIELSPRRISIFQFDIERSLEDRQN-LIFRVTCSKGTYIRSLCADF 487
G++M D R G I L RR++I I L + N ++F V CSKGTY+RS+C D
Sbjct: 124 GKRMCDLVRSGRQSEITLKTRRVNIKDIKI---LSIKGNKVMFYVECSKGTYVRSICHDI 180
Query: 488 GKALGSCAHLTALRRDSIGQYSADDAWEFKELE 520
G+ LG AH++ L R S G++ D++ +ELE
Sbjct: 181 GEYLGCGAHMSFLNRTSSGKFDLDNSITLEELE 213
>gi|366166635|ref|ZP_09466390.1| tRNA pseudouridine synthase B [Acetivibrio cellulolyticus CD2]
Length = 295
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 94/216 (43%), Positives = 129/216 (59%), Gaps = 10/216 (4%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
V KP G TSF + LR L+K +K+GH GTLDP A G+L VC+GKATK ++ K Y
Sbjct: 7 VLKPTGMTSFDIVAYLRSLLKERKIGHTGTLDPGAVGVLPVCIGKATKTIEYLTDKDKVY 66
Query: 374 SGVFRLGEATSTWDADSPVIQ--REPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGG 431
S LG +T T D+ V++ + H E I A SF GE Q+PPM+SA+K+ G
Sbjct: 67 SAELTLGISTDTQDSYGTVLKVCEANFSH---EQIYDAIKSFIGEYKQIPPMYSAVKIEG 123
Query: 432 EKMYDKARRGESIELSPRRISIFQFDIERSLEDRQN-LIFRVTCSKGTYIRSLCADFGKA 490
+K+Y+ AR G +IE PR I+I +I +E R N IF V CSKGTYIR+LC+D G
Sbjct: 124 KKLYELAREGITIERQPRDITIHSINI---IEIRDNKAIFEVECSKGTYIRTLCSDIGDK 180
Query: 491 LGSCAHLTALRRDSIGQYSADDAWEFKELEEAITKN 526
LG H++ L R G + ++ +E+ E ++KN
Sbjct: 181 LGCGGHMSFLVRTRAGHFELSNSLTLEEIYE-LSKN 215
>gi|386344683|ref|YP_006040847.1| tRNA pseudouridine synthase B [Streptococcus thermophilus JIM 8232]
gi|339278144|emb|CCC19892.1| tRNA pseudouridine synthase B (tRNA pseudouridine 55 synthase)
(Psi55 synthase) (tRNA-uridine isomerase) (tRNA
pseudouridylate synthase) [Streptococcus thermophilus
JIM 8232]
Length = 293
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 83/216 (38%), Positives = 126/216 (58%), Gaps = 3/216 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ + K G TS KLR+++ KK+GH GTLDP TG+L + VGKAT++++
Sbjct: 5 IINLKKEAGMTSHDAVFKLRKILHEKKIGHGGTLDPDVTGVLPITVGKATRVIEYMTEAG 64
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y G +G +T+T DA V+Q P + + +A ASF GEI Q+PPM+SA+K+
Sbjct: 65 KVYEGEITIGFSTTTEDASGEVVQTTPITELDGATVDQAMASFEGEITQIPPMYSAVKIN 124
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLE---DRQNLIFRVTCSKGTYIRSLCADF 487
G+K+Y+ AR GE +E R++ I +F +E FRV CSKGTY+R+L D
Sbjct: 125 GKKLYEYARAGEEVERPQRQVKITEFVRTSPIELENGTARFTFRVACSKGTYVRTLSVDL 184
Query: 488 GKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
G LG +H++ALRR + + D + ++ E +
Sbjct: 185 GVKLGFASHMSALRRTASAGLTLDSSLTLSQISEMV 220
>gi|399888401|ref|ZP_10774278.1| tRNA pseudouridine synthase B [Clostridium arbusti SL206]
Length = 289
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 89/208 (42%), Positives = 129/208 (62%), Gaps = 3/208 (1%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
+ K G TSF V +R+L ++KKVGH GTLDP+ATG+L VC+GKATKLVD K Y
Sbjct: 7 IYKTPGMTSFDVVRSIRKLSRIKKVGHTGTLDPLATGVLPVCLGKATKLVDYIMDDFKIY 66
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEK 433
V +LG + T+D + +++ ++ +EDIR A SF G I Q+PPM+SA+KV G++
Sbjct: 67 DVVLKLGFTSDTYDKEGKIVKGSHI-NVSEEDIRDAINSFIGSIDQIPPMYSALKVNGKR 125
Query: 434 MYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKALGS 493
+Y+ AR+G +E R+I+I +DI + + F V CSKGTYIRSLC D G L
Sbjct: 126 LYELARQGIEVERKSRKITI--YDIRITEIKIPYVSFVVKCSKGTYIRSLCNDIGSILKC 183
Query: 494 CAHLTALRRDSIGQYSADDAWEFKELEE 521
+ L R + G ++ +D+ + +L E
Sbjct: 184 GGLMWNLERIATGAFTKEDSIKLDDLTE 211
>gi|182417578|ref|ZP_02948903.1| tRNA pseudouridine synthase B [Clostridium butyricum 5521]
gi|237667423|ref|ZP_04527407.1| tRNA pseudouridine synthase B [Clostridium butyricum E4 str. BoNT E
BL5262]
gi|182378591|gb|EDT76119.1| tRNA pseudouridine synthase B [Clostridium butyricum 5521]
gi|237655771|gb|EEP53327.1| tRNA pseudouridine synthase B [Clostridium butyricum E4 str. BoNT E
BL5262]
Length = 291
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 91/216 (42%), Positives = 127/216 (58%), Gaps = 4/216 (1%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
V K +G +SF V K++ L KKVGH GTLDP ATG+L V +GKATK++D K Y
Sbjct: 7 VYKNRGMSSFDVVRKIKFLAHEKKVGHTGTLDPEATGVLPVALGKATKIIDYIMNSSKAY 66
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEK 433
LG+ T+T+D + V+ + HIK+E+ R SF GEI Q+PPM+SA+K G +
Sbjct: 67 EVKLILGKKTTTYDLEGEVVSEKDVSHIKEEEARDVVLSFIGEIDQIPPMYSALKKNGVR 126
Query: 434 MYDKARRGESIELSPRRISIFQF-DIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKALG 492
+YD AR+G +E RRI+I DI+ L + V CSKGTYIRSLC D G+ L
Sbjct: 127 LYDLARQGIEVEREARRITIHDITDIKIEL---PYISMTVYCSKGTYIRSLCYDIGEKLN 183
Query: 493 SCAHLTALRRDSIGQYSADDAWEFKELEEAITKNYF 528
A +T L R + + +D+ ++L E +N+
Sbjct: 184 VGATMTMLNRSATSVFRQEDSINIEDLTEENIENHL 219
>gi|404493178|ref|YP_006717284.1| tRNA pseudouridine 55 synthase [Pelobacter carbinolicus DSM 2380]
gi|91208088|sp|Q3A4A3.1|TRUB_PELCD RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|77545242|gb|ABA88804.1| tRNA pseudouridine 55 synthase [Pelobacter carbinolicus DSM 2380]
Length = 306
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 84/210 (40%), Positives = 126/210 (60%), Gaps = 2/210 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++V+KP+G TS V G++RRL ++KVGHAGTLDP+ATG+L+V +G+AT+++
Sbjct: 4 ILIVDKPQGMTSHAVVGRIRRLFGLRKVGHAGTLDPLATGVLVVALGQATRILQFLMQEN 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y LG+ T T D++ ++ HI + + S G Q+PPM+SA+K
Sbjct: 64 KVYRASLVLGKTTDTQDSEGQIVATSDPGHIDAQSVADVCHSMVGSYDQMPPMYSALKKD 123
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKA 490
G +Y AR+G + PRRI+I FD++ + N+ F V CSKGTY+R++C D G
Sbjct: 124 GVPLYKLARQGVEVSRKPRRITI--FDLQLLAVEPPNITFDVHCSKGTYVRTICHDIGVK 181
Query: 491 LGSCAHLTALRRDSIGQYSADDAWEFKELE 520
LG AHLTALRR + +A + +E
Sbjct: 182 LGCGAHLTALRRLRSAPFDVKEAVTLEAIE 211
>gi|229829170|ref|ZP_04455239.1| hypothetical protein GCWU000342_01255 [Shuttleworthia satelles DSM
14600]
gi|229792333|gb|EEP28447.1| hypothetical protein GCWU000342_01255 [Shuttleworthia satelles DSM
14600]
Length = 315
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 88/209 (42%), Positives = 130/209 (62%), Gaps = 3/209 (1%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
V K G+TSF V KLR ++ ++K+GH GTLDP A G+L VC+G+ATK V+ K Y
Sbjct: 8 VYKEPGFTSFDVVAKLRGILHIRKIGHTGTLDPAARGVLPVCIGRATKAVNLMANWTKTY 67
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEK 433
+LG T + D +++R P + +++I++ ASF G Q+PPM+SA KVGG++
Sbjct: 68 IADMQLGIRTDSQDMTGQILERNPVS-VSEDEIQREVASFFGPQDQIPPMYSARKVGGKR 126
Query: 434 MYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKALGS 493
+Y AR+G IEL R I +DI+ + ++I VTCSKGTYIR+LC+D G ALG
Sbjct: 127 LYHYARQG--IELERRASHIVIYDIQILSMELPHVIMEVTCSKGTYIRTLCSDIGDALGC 184
Query: 494 CAHLTALRRDSIGQYSADDAWEFKELEEA 522
A + AL R +G + + +A +++EA
Sbjct: 185 GASMAALERIRVGDFDSKNALRLDQIQEA 213
>gi|453362030|dbj|GAC81983.1| tRNA pseudouridine synthase B [Gordonia malaquae NBRC 108250]
Length = 299
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 90/217 (41%), Positives = 127/217 (58%), Gaps = 8/217 (3%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++V+K G TS V K R+ + +KVGHAGTLDPMATG+L++ V +ATKL+
Sbjct: 11 LLIVDKAAGMTSHDVVAKTRKAFQTRKVGHAGTLDPMATGVLVIGVERATKLLGLLSLTT 70
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y+ RLG++T+T DA+ V++ + DE I A+ G+I Q+P SAIKV
Sbjct: 71 KSYAATIRLGQSTNTDDAEGDVLESSDASGVTDEQIVAGVAALTGDILQIPAKVSAIKVD 130
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIF-----RVTCSKGTYIRSLCA 485
G + + R GE EL R +++ +FDI L+ R++ F V CS GTYIRSL
Sbjct: 131 GRRAHVLMRTGEEFELDARPVTVSRFDI---LDIRRDGAFVDVDVDVDCSSGTYIRSLAR 187
Query: 486 DFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEA 522
D G LG HLTALRR ++G ++ D A + EA
Sbjct: 188 DLGAGLGVGGHLTALRRTAVGPFTLDHARTMDAVTEA 224
>gi|323351791|ref|ZP_08087445.1| tRNA pseudouridine synthase B [Streptococcus sanguinis VMC66]
gi|322122277|gb|EFX94003.1| tRNA pseudouridine synthase B [Streptococcus sanguinis VMC66]
Length = 292
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 88/222 (39%), Positives = 130/222 (58%), Gaps = 4/222 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ + K G TS KLR+++K KK+GH GTLDP G+L + VGKAT+LV+ Q
Sbjct: 4 IINLRKEAGMTSHDAVFKLRKILKTKKIGHGGTLDPDVVGVLPIAVGKATRLVEFMQEEG 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDED-IRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA +++R P + +E I + S GEI Q+PPM+SA+KV
Sbjct: 64 KVYEGEITLGCSTTTEDASGDILERTPVTELLEEALIDEVMESMTGEIRQIPPMYSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIERSLE---DRQNLIFRVTCSKGTYIRSLCAD 486
G K+Y+ AR G+ +E R+++I+ F+ + ++ FRV CSKGTY+R+L D
Sbjct: 124 NGRKLYEYARAGQEVERPERQVTIYSFERTSPISYEGEQARFRFRVKCSKGTYVRTLSVD 183
Query: 487 FGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAITKNYF 528
G LG +H++ L R S S DDA E+ E + + F
Sbjct: 184 LGTKLGFASHMSQLTRTSSAGMSLDDALTLDEIAERVAVDDF 225
>gi|357238878|ref|ZP_09126214.1| tRNA pseudouridine synthase B [Streptococcus ictaluri 707-05]
gi|356752600|gb|EHI69725.1| tRNA pseudouridine synthase B [Streptococcus ictaluri 707-05]
Length = 300
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 89/217 (41%), Positives = 129/217 (59%), Gaps = 4/217 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ + K G TS KLR+L++ KK+GH GTLDP G+L + VGKAT++++
Sbjct: 12 IINLKKEAGMTSHDAVFKLRKLLQEKKIGHGGTLDPDVVGVLPIAVGKATRVIEYMTDSG 71
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDED-IRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V++R DE I KA SF G+I QVPPM+SA+KV
Sbjct: 72 KVYQGQITLGFSTTTEDASGEVVERSTLPSSLDEKMIDKAMQSFMGDISQVPPMYSAVKV 131
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIERSLE---DRQNLIFRVTCSKGTYIRSLCAD 486
G K+Y+ AR GES+E R++SI+QF+ L FRV+CSKGTY+R+L D
Sbjct: 132 NGRKLYEYARAGESVERPTRQVSIYQFERTSPLSFTGGTCQFDFRVSCSKGTYVRTLAVD 191
Query: 487 FGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
GK+LG +H++ L R + +DA ++ + +
Sbjct: 192 LGKSLGIASHMSYLERQASAGLVLEDALTLSDIADKL 228
>gi|86742239|ref|YP_482639.1| tRNA pseudouridine synthase B [Frankia sp. CcI3]
gi|86569101|gb|ABD12910.1| tRNA pseudouridine synthase B [Frankia sp. CcI3]
Length = 327
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 87/226 (38%), Positives = 134/226 (59%), Gaps = 18/226 (7%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP GWTS V + RR++ +++GHAGTLDPMATG+L++ G+ T+L+
Sbjct: 36 LVVVDKPAGWTSHDVVARARRILGQRRIGHAGTLDPMATGVLVLGAGRGTRLLGHLALTD 95
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y RLG T+T DA+ ++ P + + + + +A A+ G + QVP SA+KVG
Sbjct: 96 KVYDATIRLGRTTTTDDAEGAPVEDRPVD-VDADRLTRAMAALTGVLDQVPASVSAVKVG 154
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDI--ERSLEDRQ------NLIFRVTCSKGTYIRS 482
G + Y + R GE ++L+PRR+++ +FD+ R+ D +L V CS GTY+R+
Sbjct: 155 GVRAYARVRAGEVVDLAPRRVTVHRFDLLARRAAGDGAVDPAGTDLEVTVGCSSGTYVRA 214
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAITKNYF 528
L D G AL AHLTALRR ++G + +L A+T + F
Sbjct: 215 LARDLGAALDCGAHLTALRRTAVGPF---------DLAGAVTLDTF 251
>gi|419767810|ref|ZP_14293954.1| tRNA pseudouridine(55) synthase [Streptococcus mitis SK579]
gi|383352674|gb|EID30310.1| tRNA pseudouridine(55) synthase [Streptococcus mitis SK579]
Length = 292
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 90/217 (41%), Positives = 125/217 (57%), Gaps = 4/217 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ + K G TS KLR+++ KK+GH GTLDP G+L + VGKAT++V+ Q
Sbjct: 4 IINLKKEAGMTSHDAVFKLRKILGTKKIGHGGTLDPDVVGVLPIAVGKATRMVEFMQDEG 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDED-IRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V+ P DE I + AS G I Q+PPM+SA+KV
Sbjct: 64 KVYEGEITLGYSTTTEDASGEVVAETPVLSPLDEKLIDEVIASLTGPITQIPPMYSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNL---IFRVTCSKGTYIRSLCAD 486
G K+Y+ AR G+ +E R+++I+QFD + NL FRV CSKGTYIR+L D
Sbjct: 124 NGRKLYEYARAGQEVERPERQVTIYQFDRTSPISYEGNLARFTFRVKCSKGTYIRTLSVD 183
Query: 487 FGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
G+ LG AH++ L R S D A +E+ E +
Sbjct: 184 LGEKLGYAAHMSQLTRTSAAGLQLDAALTLEEIAEKV 220
>gi|319649517|ref|ZP_08003673.1| TRNA pseudouridine 55 synthase [Bacillus sp. 2_A_57_CT2]
gi|317398679|gb|EFV79361.1| TRNA pseudouridine 55 synthase [Bacillus sp. 2_A_57_CT2]
Length = 305
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 88/216 (40%), Positives = 130/216 (60%), Gaps = 5/216 (2%)
Query: 316 KPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSG 375
KPKG TS KLR+++++KK+GH GTLDP TG+L +C+G+ATK+ + K Y G
Sbjct: 9 KPKGMTSHDCVFKLRKILRMKKIGHTGTLDPDVTGVLPICLGRATKVAEYITDAGKSYEG 68
Query: 376 VFRLGEATSTWDADSPVIQR-EPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEKM 434
+G +T+T DA V++R + I I A S GEI Q PPMFSA+KV G+++
Sbjct: 69 EVTIGFSTTTEDASGEVVERKDVTAPIARNQIMDALQSLTGEITQTPPMFSAVKVNGKRL 128
Query: 435 YDKARRGESIELSPRRISIFQFDI--ERSLEDRQNLI--FRVTCSKGTYIRSLCADFGKA 490
Y+ AR+G +E R+++I+ ++ R + + +N+ FRV CSKGTYIR+L G
Sbjct: 129 YEYARQGIEVERPSRKVTIYSIELLDGRKMFEGENITFRFRVACSKGTYIRTLAVMIGSE 188
Query: 491 LGSCAHLTALRRDSIGQYSADDAWEFKELEEAITKN 526
LG AH++ L R + DD F+E+EE + K
Sbjct: 189 LGYPAHMSELVRIQSASLTLDDCLTFEEIEERVEKG 224
>gi|377830766|ref|ZP_09813758.1| tRNA pseudouridine synthase B [Lactobacillus mucosae LM1]
gi|377555384|gb|EHT17071.1| tRNA pseudouridine synthase B [Lactobacillus mucosae LM1]
Length = 303
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 85/218 (38%), Positives = 133/218 (61%), Gaps = 5/218 (2%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ + K +G TSF +LRR++ KK+GH+GTLDP G+L +CVG+ATK+V+
Sbjct: 10 IIPLYKERGMTSFDCVSRLRRILHTKKIGHSGTLDPNVDGVLPICVGQATKVVEFLMASG 69
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDED-IRKAAASFRGEIWQVPPMFSAIKV 429
K Y G +G+AT+T D D V+ ++P DED I++A G+I Q+PPM+SAIKV
Sbjct: 70 KQYVGELLVGQATTTQDLDGEVVAQKPVTAPIDEDTIKQAMQELTGDIVQIPPMYSAIKV 129
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIERSLED----RQNLIFRVTCSKGTYIRSLCA 485
G+K+Y+ AR GE++E R + I +F++ S D +Q + F V CSKGTY+R+L
Sbjct: 130 NGKKLYEYARAGETVERPKRHVHIARFEMTASSYDEKKQQQRIRFVVDCSKGTYVRTLAY 189
Query: 486 DFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
D + LG +++L R G + D ++++A+
Sbjct: 190 DLAEKLGYPGVMSSLTRTKSGGFELDQTLSLSDIQDAM 227
>gi|255524225|ref|ZP_05391184.1| tRNA pseudouridine synthase B [Clostridium carboxidivorans P7]
gi|296185346|ref|ZP_06853756.1| tRNA pseudouridine synthase B [Clostridium carboxidivorans P7]
gi|255512050|gb|EET88331.1| tRNA pseudouridine synthase B [Clostridium carboxidivorans P7]
gi|296050180|gb|EFG89604.1| tRNA pseudouridine synthase B [Clostridium carboxidivorans P7]
Length = 291
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 88/208 (42%), Positives = 126/208 (60%), Gaps = 7/208 (3%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
+NKP G +SF V K++ + K KKVGH GTLDP A+G+L +C+G ATKLVD K Y
Sbjct: 7 INKPLGMSSFDVVRKVKSIAKTKKVGHTGTLDPEASGVLPICIGNATKLVDYIMSDYKIY 66
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEK 433
LG T T+D + VI+ P + ++ E+++K F G I Q+PPM+SA+KV G++
Sbjct: 67 KVELMLGITTDTYDREGKVIKNSPVD-LEVEEVKKVIKEFEGNIDQIPPMYSALKVNGQR 125
Query: 434 MYDKARRGESIELSPRRISIFQFDIERSLEDRQ--NLIFRVTCSKGTYIRSLCADFGKAL 491
+Y AR+G IE PR I+I+ +I D Q +IF V CSKGTYIRSLC D G+ L
Sbjct: 126 LYSLARQGIEIERKPRSITIYSINI----IDIQLPKVIFEVKCSKGTYIRSLCYDIGEKL 181
Query: 492 GSCAHLTALRRDSIGQYSADDAWEFKEL 519
+ L+R G ++ + + + +L
Sbjct: 182 KCGGTMWNLQRTRTGSFNIESSVDLDKL 209
>gi|401564638|ref|ZP_10805516.1| tRNA pseudouridine(55) synthase [Selenomonas sp. FOBRC6]
gi|400188635|gb|EJO22786.1| tRNA pseudouridine(55) synthase [Selenomonas sp. FOBRC6]
Length = 291
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 87/209 (41%), Positives = 124/209 (59%), Gaps = 1/209 (0%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
V KP G +S V +RR+ K K+VGHAGTLDP A G+L V +G+A +LV+ +G K Y
Sbjct: 7 VLKPTGLSSHDVIDIVRRIFKQKRVGHAGTLDPAAAGILPVALGRAARLVEYMEGADKSY 66
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHI-KDEDIRKAAASFRGEIWQVPPMFSAIKVGGE 432
G AT T D VI+ P + +E++R A F GEI Q PP +SAIK+GG+
Sbjct: 67 RAEIAFGYATDTGDVYGEVIESVPHPTLPTEEEMRAVLARFVGEIQQRPPAYSAIKIGGQ 126
Query: 433 KMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKALG 492
+ YD AR+G +E+ R ++I + ++ R+ ++ V C+KGTYIRSLC D G ALG
Sbjct: 127 RAYDLARQGAEVEIEARTVTIHRLELVHVDAVRRRILIDVDCAKGTYIRSLCTDIGTALG 186
Query: 493 SCAHLTALRRDSIGQYSADDAWEFKELEE 521
A + L R +G + D++ +EL E
Sbjct: 187 LPATMHFLLRTRVGGFVLADSYTLEELAE 215
>gi|126698912|ref|YP_001087809.1| transfer RNA pseudouridine synthase B [Clostridium difficile 630]
gi|255306272|ref|ZP_05350443.1| tRNA pseudouridine synthase B [Clostridium difficile ATCC 43255]
gi|423082297|ref|ZP_17070889.1| tRNA pseudouridine synthase B [Clostridium difficile 002-P50-2011]
gi|423087689|ref|ZP_17076075.1| tRNA pseudouridine synthase B [Clostridium difficile 050-P50-2011]
gi|423090902|ref|ZP_17079188.1| tRNA pseudouridine synthase B [Clostridium difficile 70-100-2010]
gi|123067081|sp|Q18BH7.1|TRUB_CLOD6 RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|115250349|emb|CAJ68171.1| transfer RNA pseudouridine synthase B [Clostridium difficile 630]
gi|357544003|gb|EHJ26009.1| tRNA pseudouridine synthase B [Clostridium difficile 050-P50-2011]
gi|357548623|gb|EHJ30483.1| tRNA pseudouridine synthase B [Clostridium difficile 002-P50-2011]
gi|357556017|gb|EHJ37639.1| tRNA pseudouridine synthase B [Clostridium difficile 70-100-2010]
Length = 301
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 87/213 (40%), Positives = 132/213 (61%), Gaps = 6/213 (2%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ + KP G TS V ++R+++ +KKVGH GTLDP A+G+L +C+GKATK+ +
Sbjct: 4 IISILKPTGMTSHDVVSRVRKILNIKKVGHTGTLDPDASGVLPICIGKATKVCEVILNKD 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y LG +T T+DA ++++ +EDI +A + RGEI Q+PP++SA+KV
Sbjct: 64 KSYICELTLGISTDTYDASGEILKKVDDFKFSNEDIERAFDTQRGEINQLPPIYSALKVN 123
Query: 431 GEKMYDKARRG--ESIELSPRRISIFQFDIERSLEDRQN-LIFRVTCSKGTYIRSLCADF 487
G++M D R G I L RR++I I L + N ++F V CSKGTY+RS+C D
Sbjct: 124 GKRMCDLVRSGRQSEITLKTRRVNIKDIKI---LSIKGNKVMFYVECSKGTYVRSICHDI 180
Query: 488 GKALGSCAHLTALRRDSIGQYSADDAWEFKELE 520
G+ LG AH++ L R S G++ D++ +ELE
Sbjct: 181 GEYLGCGAHMSFLNRTSSGKFDLDNSITLEELE 213
>gi|153855232|ref|ZP_01996398.1| hypothetical protein DORLON_02412 [Dorea longicatena DSM 13814]
gi|149752231|gb|EDM62162.1| tRNA pseudouridine synthase B [Dorea longicatena DSM 13814]
Length = 299
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 90/210 (42%), Positives = 125/210 (59%), Gaps = 2/210 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ V K KG+TS V KLR +V KK+GH GTLDP ATG+L VC+GKATKL D
Sbjct: 5 IINVYKEKGFTSHDVVAKLRGIVGQKKIGHTGTLDPDATGVLPVCLGKATKLCDLLTDKN 64
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y V LG+ T T D V++ + E + +E +R+A F G+ Q+PPM+SA+KV
Sbjct: 65 KTYEAVLLLGKTTDTQDITGEVLEEKSTEALTEEKVREAIEGFIGDYEQIPPMYSALKVN 124
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKA 490
G+K+Y+ AR G+ IE R + I DI+ D + V+CSKGTYIR+LC D G+
Sbjct: 125 GKKLYELAREGKVIERKARLVKI--LDIQILEIDLPKVRMEVSCSKGTYIRTLCHDIGEK 182
Query: 491 LGSCAHLTALRRDSIGQYSADDAWEFKELE 520
LG + +L R + + +DA E+E
Sbjct: 183 LGCGGCMESLIRTRVSTFRIEDAKTLDEIE 212
>gi|386774364|ref|ZP_10096742.1| tRNA pseudouridine synthase B [Brachybacterium paraconglomeratum
LC44]
Length = 315
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 92/213 (43%), Positives = 131/213 (61%), Gaps = 4/213 (1%)
Query: 307 PFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRY 366
P G ++LV+K + TS V ++R L+ KKVGHAGTLDPMATGLL++ VG+ T+L+
Sbjct: 5 PHG-ILLVDKAEDRTSHDVVARVRWLLGTKKVGHAGTLDPMATGLLVLGVGQGTRLLTHL 63
Query: 367 QGMIKGYSGVFRLGEATSTWDADS-PVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFS 425
G+ K Y RLG AT+T D + PV +R I+D + +A RG+I QVP S
Sbjct: 64 VGLDKTYLATIRLGSATTTDDREGEPVGERVDATGIEDARLEEALDGLRGDIQQVPSTVS 123
Query: 426 AIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFR--VTCSKGTYIRSL 483
AIKV G++ Y +AR GE ++L+ R + + +F+I E +L V CS GTY+R+L
Sbjct: 124 AIKVDGKRAYARARAGEDVQLAARPVRVPRFEILSRTERDGHLDLEAVVDCSSGTYVRAL 183
Query: 484 CADFGKALGSCAHLTALRRDSIGQYSADDAWEF 516
D G ALG HLTALRR ++G ++ +D +
Sbjct: 184 ARDLGAALGVGGHLTALRRTAVGPFAVEDGVQV 216
>gi|344171619|emb|CCA84239.1| tRNA pseudouridine synthase B [Ralstonia syzygii R24]
Length = 311
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 93/214 (43%), Positives = 127/214 (59%), Gaps = 3/214 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L++KP GW+S + +RL+ +K GH GTLDP+ATGLL +C G+ATK
Sbjct: 17 VLLLDKPIGWSSNDALIRAKRLLWARKAGHTGTLDPLATGLLPLCFGEATKFSQDLLEAD 76
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y V RLG TST DA+ V+ E + E +R A F GEI QVPPM SA+K
Sbjct: 77 KTYETVVRLGIKTSTADAEGEVLS-ERSVAVTPEQLRTAIGRFIGEIDQVPPMHSALKKD 135
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQ--NLIFRVTCSKGTYIRSLCADFG 488
G+ +Y+ AR G+++E + RR+++ DI + D + RV CSKGTYIR+L D G
Sbjct: 136 GKPLYEYARAGQTVERAARRVTVRAIDILATDLDAAAPTVTLRVCCSKGTYIRTLGEDLG 195
Query: 489 KALGSCAHLTALRRDSIGQYSADDAWEFKELEEA 522
+ LG AHL ALRR +G + D A + LE A
Sbjct: 196 EVLGCGAHLVALRRTQVGSLTLDGAVTLEALEAA 229
>gi|291436932|ref|ZP_06576322.1| tRNA pseudouridine synthase [Streptomyces ghanaensis ATCC 14672]
gi|291339827|gb|EFE66783.1| tRNA pseudouridine synthase [Streptomyces ghanaensis ATCC 14672]
Length = 301
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 87/221 (39%), Positives = 126/221 (57%), Gaps = 7/221 (3%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G+TS V K+R + + ++VGHAGTLDPMATG+L++ V +ATKL+
Sbjct: 11 LVIVDKPSGFTSHDVVAKMRGIARTRRVGHAGTLDPMATGVLVLGVERATKLLGHLALTE 70
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y G RLG+ T T DA+ + + E I A G+I QVP SAIK+
Sbjct: 71 KEYVGTVRLGQNTLTDDAEGEITSSTDASRVTREAIDAGVAELTGDIMQVPSRVSAIKIN 130
Query: 431 GEKMYDKARRGESIELSPRRISIFQF---DIERSLEDRQ----NLIFRVTCSKGTYIRSL 483
G + Y +AR GE ++ R +++ F D+ ++ D +L+ V CS GTYIR+L
Sbjct: 131 GVRSYKRAREGEEFDIPARPVTVSSFSVYDVREAVADDGTAVLDLVVSVVCSSGTYIRAL 190
Query: 484 CADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAIT 524
D G LG HLTALRR +G Y + A +L++ +T
Sbjct: 191 ARDLGAGLGVGGHLTALRRTRVGPYKLEAARTLDQLQQELT 231
>gi|339640470|ref|ZP_08661914.1| tRNA pseudouridine synthase B [Streptococcus sp. oral taxon 056
str. F0418]
gi|339453739|gb|EGP66354.1| tRNA pseudouridine synthase B [Streptococcus sp. oral taxon 056
str. F0418]
Length = 292
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 88/222 (39%), Positives = 130/222 (58%), Gaps = 4/222 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ + K G TS KLR+++K KK+GH GTLDP G+L + VGKAT+LV+ Q
Sbjct: 4 IINLRKEAGMTSHDAVFKLRKILKTKKIGHGGTLDPDVIGVLPIAVGKATRLVEFMQEEG 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDED-IRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA +++R P + +E I +A S GEI Q+PPM+SA+KV
Sbjct: 64 KVYEGEITLGCSTTTEDASGDILERTPVTELLEEALIDEAMESMTGEIRQIPPMYSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIERSLE---DRQNLIFRVTCSKGTYIRSLCAD 486
G K+Y+ R G+ +E R+++I+ F+ + ++ FRV CSKGTY+R+L D
Sbjct: 124 NGRKLYEYVRVGQEVERPERKVTIYSFERTSPISYEGEQARFRFRVKCSKGTYVRTLSVD 183
Query: 487 FGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAITKNYF 528
G LG +H++ L R S S DDA E+ E + + F
Sbjct: 184 LGAKLGLASHMSQLTRTSSAGMSLDDALTLDEIAERVAVDDF 225
>gi|255100335|ref|ZP_05329312.1| tRNA pseudouridine synthase B [Clostridium difficile QCD-63q42]
Length = 301
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 87/213 (40%), Positives = 132/213 (61%), Gaps = 6/213 (2%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ + KP G TS V ++R+++ +KKVGH GTLDP A+G+L +C+GKATK+ +
Sbjct: 4 IISILKPTGMTSHDVVSRVRKILNIKKVGHTGTLDPDASGVLPICIGKATKVCEVILNKD 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y LG +T T+DA ++++ +EDI +A + RGEI Q+PP++SA+KV
Sbjct: 64 KSYICELTLGISTDTYDASGEILKKVDDFKFSNEDIERAFDTQRGEINQLPPIYSALKVN 123
Query: 431 GEKMYDKARRG--ESIELSPRRISIFQFDIERSLEDRQN-LIFRVTCSKGTYIRSLCADF 487
G++M D R G I L RR++I I L + N ++F V CSKGTY+RS+C D
Sbjct: 124 GKRMCDLVRSGRQSEITLKTRRVNIKDIKI---LSIKGNKVMFYVECSKGTYVRSICHDI 180
Query: 488 GKALGSCAHLTALRRDSIGQYSADDAWEFKELE 520
G+ LG AH++ L R S G++ D++ +ELE
Sbjct: 181 GEYLGCGAHMSFLNRTSSGKFDLDNSITLEELE 213
>gi|417849245|ref|ZP_12495169.1| tRNA pseudouridine synthase B [Streptococcus mitis SK1080]
gi|339456712|gb|EGP69297.1| tRNA pseudouridine synthase B [Streptococcus mitis SK1080]
Length = 292
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 89/217 (41%), Positives = 127/217 (58%), Gaps = 4/217 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ + K G TS KLR+++ KK+GH GTLDP G+L + VGKAT++V+ Q
Sbjct: 4 IINLKKEAGMTSHDAVFKLRKILGTKKIGHGGTLDPDVVGVLPIAVGKATRMVEFMQDEG 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIR-KAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V+ P DE I KA AS G I Q+PP++SA+KV
Sbjct: 64 KVYEGEITLGYSTTTEDASGEVVAETPVLSPLDETIVDKAIASLTGSITQIPPVYSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNL---IFRVTCSKGTYIRSLCAD 486
G K+Y+ AR G+ +E R+++I+QF+ + +L FRV CSKGTYIR+L D
Sbjct: 124 NGRKLYEYARAGQEVERPERQVTIYQFERTSQISYEGHLARFTFRVKCSKGTYIRTLSVD 183
Query: 487 FGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
G+ LG AH++ L R S +DA +E+ E +
Sbjct: 184 LGEKLGYAAHMSHLTRTSAAGLQLEDALTLEEIAEKV 220
>gi|81428853|ref|YP_395853.1| tRNA-specific pseudouridylate synthase (tRNA pseudouridine synthase
B) [Lactobacillus sakei subsp. sakei 23K]
gi|91208082|sp|Q38W87.1|TRUB_LACSS RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|78610495|emb|CAI55546.1| tRNA-specific pseudouridylate synthase (tRNA pseudouridine synthase
B) [Lactobacillus sakei subsp. sakei 23K]
Length = 305
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 92/213 (43%), Positives = 127/213 (59%), Gaps = 6/213 (2%)
Query: 316 KPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSG 375
K +G TS K+RR++ +KKVGH+GTLDP G+L +C+G+ATK+VD+ K Y+G
Sbjct: 9 KERGMTSNDCVFKVRRILHMKKVGHSGTLDPNVDGVLPICIGQATKVVDQLVHSGKVYTG 68
Query: 376 VFRLGEATSTWDADSPVIQREPW-EHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEKM 434
LG +T+T D D V++ + E I E I++ ASF GE Q+PPMFSA+KV G ++
Sbjct: 69 EITLGLSTTTEDLDGEVVEEQQLTEPISTEKIKETLASFLGESIQIPPMFSAVKVNGRRL 128
Query: 435 YDKARRGESIELSPRRISIFQFDIERSLE-----DRQNLIFRVTCSKGTYIRSLCADFGK 489
YD AR G+ +E R+I+I QFD++ E RQ F CSKGTYIR+L DFG+
Sbjct: 129 YDYARAGDPVERPQRKITITQFDLQGEPEFDAKTGRQTFRFIAGCSKGTYIRTLAVDFGR 188
Query: 490 ALGSCAHLTALRRDSIGQYSADDAWEFKELEEA 522
LG A ++ L R G +L EA
Sbjct: 189 KLGLPAVMSDLTRLKSGGIQIGSCVTLAQLAEA 221
>gi|254556863|ref|YP_003063280.1| tRNA pseudouridine synthase B [Lactobacillus plantarum JDM1]
gi|300768176|ref|ZP_07078081.1| pseudouridylate synthase [Lactobacillus plantarum subsp. plantarum
ATCC 14917]
gi|308180804|ref|YP_003924932.1| pseudouridylate synthase [Lactobacillus plantarum subsp. plantarum
ST-III]
gi|380032801|ref|YP_004889792.1| tRNA pseudouridine synthase B [Lactobacillus plantarum WCFS1]
gi|418275545|ref|ZP_12890868.1| tRNA pseudouridine synthase B [Lactobacillus plantarum subsp.
plantarum NC8]
gi|37088392|sp|Q88VL5.1|TRUB_LACPL RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|254045790|gb|ACT62583.1| pseudouridylate synthase [Lactobacillus plantarum JDM1]
gi|300494240|gb|EFK29403.1| pseudouridylate synthase [Lactobacillus plantarum subsp. plantarum
ATCC 14917]
gi|308046295|gb|ADN98838.1| pseudouridylate synthase [Lactobacillus plantarum subsp. plantarum
ST-III]
gi|342242044|emb|CCC79278.1| tRNA pseudouridine synthase B [Lactobacillus plantarum WCFS1]
gi|376009096|gb|EHS82425.1| tRNA pseudouridine synthase B [Lactobacillus plantarum subsp.
plantarum NC8]
Length = 307
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 89/214 (41%), Positives = 121/214 (56%), Gaps = 6/214 (2%)
Query: 316 KPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSG 375
KP+G TSF K+RRL + +KVGH+GTLDP G+L +C+G ATK+V K Y G
Sbjct: 10 KPRGMTSFDCVAKIRRLYQTRKVGHSGTLDPNVDGVLPICIGNATKVVQFLVASGKEYQG 69
Query: 376 VFRLGEATSTWDADSPVIQREP-WEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEKM 434
LG AT+T D D I R+ E + + A A G I Q+PPMFSA+KV G ++
Sbjct: 70 SITLGFATTTEDLDGEEIARQAVTEPFTSDQVDAALAQMTGAITQIPPMFSAVKVNGRRL 129
Query: 435 YDKARRGESIELSPRRISIFQFDIER-----SLEDRQNLIFRVTCSKGTYIRSLCADFGK 489
YD AR GE++E R I+I F + S Q + F V CSKGTY+R+L D GK
Sbjct: 130 YDYARSGETVERPERHITISSFKQRQASTYDSATQTQTIYFTVACSKGTYVRTLAVDVGK 189
Query: 490 ALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
LG A ++ L R G ++ D+ F+E+ +
Sbjct: 190 VLGVPAVMSDLTRLKSGGFTLDETVTFEEIAAHV 223
>gi|452960831|gb|EME66146.1| tRNA pseudouridine synthase B [Rhodococcus ruber BKS 20-38]
Length = 305
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 131/217 (60%), Gaps = 6/217 (2%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++V+K +G TS V + RRL+ +KVGHAGTLDPMATG+L++ V +ATK++
Sbjct: 14 LLVVDKDEGMTSHDVVARCRRLLGTRKVGHAGTLDPMATGVLVLGVERATKILGLLALTT 73
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y+ RLG++T T DA+ V+ + DE I A A+ G+I QVP SAIKV
Sbjct: 74 KAYAATIRLGQSTVTDDAEGEVLATTDAAAVTDEAIAAAVAALTGDISQVPASVSAIKVD 133
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQ------NLIFRVTCSKGTYIRSLC 484
G++ Y + R GE++EL+ R +++ +F + E R +L V CS GTYIR+L
Sbjct: 134 GKRAYARIREGEAVELAARPVTVSRFAVLARREVRADHGCFVDLDVEVECSSGTYIRALA 193
Query: 485 ADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
D G ALG AHLTALRR +G + + A +LE+
Sbjct: 194 RDLGAALGVGAHLTALRRTRVGPFGLEHARTLAQLED 230
>gi|323344441|ref|ZP_08084666.1| tRNA pseudouridine synthase B [Prevotella oralis ATCC 33269]
gi|323094568|gb|EFZ37144.1| tRNA pseudouridine synthase B [Prevotella oralis ATCC 33269]
Length = 237
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 87/219 (39%), Positives = 124/219 (56%), Gaps = 6/219 (2%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVK------KVGHAGTLDPMATGLLIVCVGKATKL 362
G ++ ++KP G TSF +R L+ + KVGHAGTLDP+ATG+LI+C G+ATK
Sbjct: 6 GEIIAIDKPLGITSFGALAHIRYLLTRRMGGTKVKVGHAGTLDPLATGVLILCTGRATKQ 65
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ Q K Y +LG T+++D + P HI E + KA F G+I QVPP
Sbjct: 66 IESLQAHTKEYVATLQLGATTASYDCEHEENAAFPTAHITREAVLKAIDGFVGDIEQVPP 125
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRS 482
+SA K+ GE+ Y R GE++ L P+RI I ++ L RV C KGTYIR+
Sbjct: 126 SYSACKIDGERAYTLRRSGENVTLKPKRIRIDAIELIGFDTATMRLTIRVVCGKGTYIRA 185
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
L D G+AL S A+L +LRR +G +D ++ +E
Sbjct: 186 LARDLGRALDSGAYLVSLRRTRVGAIRVEDCIDYDRFDE 224
>gi|448821513|ref|YP_007414675.1| tRNA pseudouridine synthase B [Lactobacillus plantarum ZJ316]
gi|448275010|gb|AGE39529.1| tRNA pseudouridine synthase B [Lactobacillus plantarum ZJ316]
Length = 307
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 88/214 (41%), Positives = 121/214 (56%), Gaps = 6/214 (2%)
Query: 316 KPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSG 375
KP+G TSF K+RRL + +KVGH+GTLDP G+L +C+G ATK+V K Y G
Sbjct: 10 KPRGMTSFDCVAKIRRLYQTRKVGHSGTLDPNVDGVLPICIGNATKVVQFLVASGKEYQG 69
Query: 376 VFRLGEATSTWDADSPVIQREP-WEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEKM 434
LG AT+T D D I R+ E + + A A G I Q+PPMFSA+KV G ++
Sbjct: 70 SITLGFATTTEDLDGEEIARQAVTEPFTSDQVDAALAQMTGAITQIPPMFSAVKVNGRRL 129
Query: 435 YDKARRGESIELSPRRISIFQFDIER-----SLEDRQNLIFRVTCSKGTYIRSLCADFGK 489
YD AR GE++E R ++I F + S Q + F V CSKGTY+R+L D GK
Sbjct: 130 YDYARSGETVERPERHVTISSFKQRQASTYDSATQTQTIYFTVACSKGTYVRTLAVDIGK 189
Query: 490 ALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
LG A ++ L R G ++ D+ F+E+ +
Sbjct: 190 VLGVPAVMSDLTRLKSGGFTLDETVTFEEIASHV 223
>gi|302345241|ref|YP_003813594.1| tRNA pseudouridine synthase B [Prevotella melaninogenica ATCC
25845]
gi|302149874|gb|ADK96136.1| tRNA pseudouridine synthase B [Prevotella melaninogenica ATCC
25845]
Length = 232
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 84/217 (38%), Positives = 124/217 (57%), Gaps = 5/217 (2%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVK-----KVGHAGTLDPMATGLLIVCVGKATKLV 363
G ++ ++KP G TSF +R L K+GHAGTLDP+ATG+LI+ GK TK +
Sbjct: 6 GVIIPIDKPYGITSFKALAHVRYLCTQANDGKVKIGHAGTLDPLATGVLILATGKMTKQI 65
Query: 364 DRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPM 423
+ Q K Y+ +LG T ++D + V + P EHI E I F G I Q+PP
Sbjct: 66 ETLQTHTKEYTATLQLGATTPSYDMEHEVNETFPTEHITMELIDATLPQFVGNIEQIPPT 125
Query: 424 FSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSL 483
+SA+KV G++ +D R+G+ + L P+ I I + ++ ++ L RV C KGTYIR+L
Sbjct: 126 YSAVKVDGKRAFDYRRKGKDVTLKPKNIRIDEIEVVDFDAEKMQLSIRVVCGKGTYIRAL 185
Query: 484 CADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELE 520
D G+A+ S A+LTALRR +G +D + + E
Sbjct: 186 ARDLGRAVNSGAYLTALRRTRVGDVRVEDCVNYDQFE 222
>gi|302558066|ref|ZP_07310408.1| tRNA pseudouridine synthase B [Streptomyces griseoflavus Tu4000]
gi|302475684|gb|EFL38777.1| tRNA pseudouridine synthase B [Streptomyces griseoflavus Tu4000]
Length = 301
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 90/218 (41%), Positives = 126/218 (57%), Gaps = 7/218 (3%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G+TS V K+R + + ++VGHAGTLDPMATG+L++ V +ATKL+
Sbjct: 11 LVIVDKPSGFTSHDVVAKMRGIARTRRVGHAGTLDPMATGVLVLGVERATKLLGHLALTE 70
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y G RLG+ T T DA+ +I I E + A G+I QVP SAIK+
Sbjct: 71 KEYLGTVRLGQNTLTDDAEGEIISSADASGITREAVDAGVAKLTGDIMQVPSKVSAIKIN 130
Query: 431 GEKMYDKARRGESIELSPRRISIFQF---DIERSL-EDRQ---NLIFRVTCSKGTYIRSL 483
G + Y +AR GE E+ R +++ F D+ ++ ED +L+ V CS GTYIR+L
Sbjct: 131 GVRSYKRAREGEEFEIPARPVTVSSFAVYDVRAAVAEDGTPVLDLVVSVVCSSGTYIRAL 190
Query: 484 CADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
D G LG HLTALRR +G Y D A +L++
Sbjct: 191 ARDLGADLGVGGHLTALRRTRVGPYKLDSARTLDQLQQ 228
>gi|226185243|dbj|BAH33347.1| tRNA pseudouridine synthase TruB [Rhodococcus erythropolis PR4]
Length = 306
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 88/217 (40%), Positives = 128/217 (58%), Gaps = 9/217 (4%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++V+K G TS V + R+L+ +KVGHAGTLDPMATG+L++ V +ATKL+
Sbjct: 16 ILIVDKEAGITSHDVVARCRKLLNTRKVGHAGTLDPMATGVLVLGVERATKLLGLLALTT 75
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K YS RLG AT T DA+ V+ + D +I A+ G+I Q+P SAIKV
Sbjct: 76 KAYSATIRLGAATDTDDAEGEVLTSADASQVTDAEIAAIVATLTGDIKQIPASVSAIKVD 135
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQ------NLIFRVTCSKGTYIRSLC 484
G++ + R GE++EL+PR +++ F++ L R +L V CS GTYIRSL
Sbjct: 136 GQRAHALVRAGETVELAPRPVTVSTFEV---LARRDVPGGFVDLDVDVECSSGTYIRSLA 192
Query: 485 ADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
D G+ LG HLTALRR +G ++ + A ++L +
Sbjct: 193 RDLGRELGVGGHLTALRRTRVGPFTLEHARTLEDLAD 229
>gi|374293411|ref|YP_005040446.1| tRNA pseudouridine synthase [Azospirillum lipoferum 4B]
gi|357425350|emb|CBS88237.1| tRNA pseudouridine synthase [Azospirillum lipoferum 4B]
Length = 313
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 91/214 (42%), Positives = 127/214 (59%), Gaps = 4/214 (1%)
Query: 307 PFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRY 366
P V+++KP+G TS K+RRL+ +K GH GTLDP+ATG+L + +G+ATK V
Sbjct: 9 PIHGWVVLDKPEGMTSTQALSKVRRLLNAEKAGHGGTLDPLATGILPIALGEATKTVSYA 68
Query: 367 QGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDED-IRKAAASFRGEIWQVPPMFS 425
K Y R GE T+T D + VI R +H D IR A +F GEI QVPP F
Sbjct: 69 MDGAKTYRFSIRWGERTTTDDREGAVIDRS--DHRPSTDAIRAALPAFLGEIQQVPPQFC 126
Query: 426 AIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCA 485
AIK+ GE+ YD AR G++++L+ R + I +F++ D + +F V C KGTY+RSL
Sbjct: 127 AIKIDGERAYDIAREGDAVDLAARTVRIDRFELVEE-PDADHAVFEVDCGKGTYVRSLAR 185
Query: 486 DFGKALGSCAHLTALRRDSIGQYSADDAWEFKEL 519
D +ALG+ H+ LRR +G ++ D A EL
Sbjct: 186 DLAEALGTVGHVGLLRRLRVGSFTLDRAISLDEL 219
>gi|167627438|ref|YP_001677938.1| tRNA pseudouridine synthase B [Francisella philomiragia subsp.
philomiragia ATCC 25017]
gi|189036479|sp|B0TXH9.1|TRUB_FRAP2 RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|167597439|gb|ABZ87437.1| tRNA pseudouridine synthase B [Francisella philomiragia subsp.
philomiragia ATCC 25017]
Length = 302
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 88/213 (41%), Positives = 128/213 (60%), Gaps = 5/213 (2%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V++NK +G +S V KL+ L +K GH GTLDPMATG+L +C G+ATK+
Sbjct: 11 VVVINKTQGLSSNKVLQKLKYLFNAQKAGHTGTLDPMATGVLPICFGRATKIAQYLLDSD 70
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREP-WEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y +LG T + DA+ +I + + E + A FRG+I Q+PPM+SA+K
Sbjct: 71 KEYIATIKLGIETDSGDAEGEIIAKNADIPELTVEYLETVLAKFRGDIVQIPPMYSALKH 130
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIERSLE-DRQNLIFRVTCSKGTYIRSLCADFG 488
G+ +Y AR G++IE+ PR I+I++ ++ LE + +L RV CSKGTYIRSL D G
Sbjct: 131 NGQPLYKLAREGKAIEVKPRNINIYELEL---LEFNTDSLKIRVKCSKGTYIRSLAIDIG 187
Query: 489 KALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
KALG HL AL+R G + + A + L++
Sbjct: 188 KALGCGGHLIALQRTQSGPFRIETALDLDNLKD 220
>gi|453072354|ref|ZP_21975480.1| tRNA pseudouridine synthase B [Rhodococcus qingshengii BKS 20-40]
gi|452757817|gb|EME16218.1| tRNA pseudouridine synthase B [Rhodococcus qingshengii BKS 20-40]
Length = 306
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 88/217 (40%), Positives = 128/217 (58%), Gaps = 9/217 (4%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++V+K G TS V + R+L+ +KVGHAGTLDPMATG+L++ V +ATKL+
Sbjct: 16 ILIVDKEAGITSHDVVARCRKLLNTRKVGHAGTLDPMATGVLVLGVERATKLLGLLALTT 75
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K YS RLG AT T DA+ V+ + D +I A+ G+I Q+P SAIKV
Sbjct: 76 KAYSATIRLGAATDTDDAEGEVLTSADASQVTDAEIAAIVATLTGDIKQIPASVSAIKVD 135
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQ------NLIFRVTCSKGTYIRSLC 484
G++ + R GE++EL+PR +++ F++ L R +L V CS GTYIRSL
Sbjct: 136 GQRAHALVRAGETVELAPRPVTVSTFEV---LARRDVPGGFVDLDVDVECSSGTYIRSLA 192
Query: 485 ADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
D G+ LG HLTALRR +G ++ + A ++L +
Sbjct: 193 RDLGRELGVGGHLTALRRTRVGPFTLEHARTLEDLAD 229
>gi|295836225|ref|ZP_06823158.1| tRNA pseudouridine synthase B [Streptomyces sp. SPB74]
gi|197699259|gb|EDY46192.1| tRNA pseudouridine synthase B [Streptomyces sp. SPB74]
Length = 302
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 93/235 (39%), Positives = 131/235 (55%), Gaps = 11/235 (4%)
Query: 297 STELPPTWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCV 356
+T+ T DG +V+V+KP G+TS V K+R + ++VGHAGTLDPMATG+L++ V
Sbjct: 2 TTQRTTTPDG----LVIVDKPSGFTSHDVVAKMRGIAGTRRVGHAGTLDPMATGVLVLGV 57
Query: 357 GKATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGE 416
+ATKL+ K Y G RLG+ T T DA+ + + E I A G+
Sbjct: 58 QRATKLLGHLALTEKEYVGTIRLGQDTVTDDAEGEITSAADASGVAREAIEAEVAKLTGD 117
Query: 417 IWQVPPMFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDR-------QNLI 469
I QVP SAIK+ G++ Y +AR GE E+ R +++ F + + ++L+
Sbjct: 118 ILQVPSKVSAIKIDGKRSYKRAREGEDFEIPARPVTVSSFLVHDVRAETAPDGTPVRDLL 177
Query: 470 FRVTCSKGTYIRSLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAIT 524
VTCS GTYIR+L D G ALG HLTALRR +G Y D A + +E +T
Sbjct: 178 VSVTCSSGTYIRALARDIGAALGVGGHLTALRRTRVGPYRLDVARTLDQHQEELT 232
>gi|19553183|ref|NP_601185.1| tRNA pseudouridine synthase B [Corynebacterium glutamicum ATCC
13032]
gi|62390819|ref|YP_226221.1| tRNA pseudouridine synthase B [Corynebacterium glutamicum ATCC
13032]
gi|37088984|sp|Q8NP46.1|TRUB_CORGL RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|21324749|dbj|BAB99372.1| Pseudouridine synthase [Corynebacterium glutamicum ATCC 13032]
gi|41326157|emb|CAF20320.1| TRNA PSEUDOURIDINE SYNTHASE B [Corynebacterium glutamicum ATCC
13032]
gi|385144085|emb|CCH25124.1| tRNA pseudouridine synthase B [Corynebacterium glutamicum K051]
Length = 297
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 89/229 (38%), Positives = 128/229 (55%), Gaps = 12/229 (5%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G TS V KLRR +KVGHAGTLDPMATG+L+V + + T+ +
Sbjct: 10 LVIVDKPAGMTSHDVVSKLRRAFSTRKVGHAGTLDPMATGVLVVGIERGTRFLAHMVAST 69
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y RLG ATST DA+ VI + I + G+I Q P SAIK+
Sbjct: 70 KAYDATIRLGAATSTDDAEGEVISTTDASGLDHSTILAEIVNLTGDIMQKPTKVSAIKID 129
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQ--NLIFRVTCSKGTYIRSLCADFG 488
G++ +++ R GE +++ R +++ FD+ D + +L RV CS GTYIR+L D G
Sbjct: 130 GKRAHERVRDGEEVDIPARPVTVSVFDVLDYHVDGEFYDLDVRVHCSSGTYIRALARDLG 189
Query: 489 KALGSCAHLTALRRDSIGQYSADDAWEFKELEE----------AITKNY 527
AL HLTALRR +G ++ +DA +L+E A+T++Y
Sbjct: 190 NALQVGGHLTALRRTEVGPFTLNDATPLSKLQENPELSLNLDQALTRSY 238
>gi|345019845|ref|ZP_08783458.1| tRNA-pseudouridine 5S synthase [Ornithinibacillus scapharcae TW25]
Length = 298
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 84/208 (40%), Positives = 121/208 (58%), Gaps = 1/208 (0%)
Query: 316 KPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSG 375
KPKG+TS K+R+L K KKVGH GTLDP G+L +C+G+ATK+V K Y
Sbjct: 9 KPKGYTSHDCVMKVRKLYKTKKVGHTGTLDPEVEGVLPICIGQATKIVQFLTDTTKVYQA 68
Query: 376 VFRLGEATSTWDADSPVIQREPWEHI-KDEDIRKAAASFRGEIWQVPPMFSAIKVGGEKM 434
LG T T DA ++ ++ ++I SF+G+I Q+PPM+SA+KV G+K+
Sbjct: 69 ELTLGSTTETEDAYGEIVDEVTVDNFPTKQEIENVLQSFKGDIIQIPPMYSAVKVNGKKL 128
Query: 435 YDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKALGSC 494
Y+ AR + +E R+++I S ++ + F+VTCSKGTYIR+L D GK LG
Sbjct: 129 YEYARANQEVERPERKVTIHDISYISSDPEQHKIQFQVTCSKGTYIRTLSVDIGKVLGYP 188
Query: 495 AHLTALRRDSIGQYSADDAWEFKELEEA 522
AH++ L R G D F+ +E+A
Sbjct: 189 AHMSHLVRIETGSIHQRDTVNFETIEKA 216
>gi|326692681|ref|ZP_08229686.1| tRNA pseudouridine synthase B [Leuconostoc argentinum KCTC 3773]
Length = 302
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 93/202 (46%), Positives = 118/202 (58%), Gaps = 4/202 (1%)
Query: 305 DGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVD 364
+ P +++VNKPKG TSF V K+RR V KKVGHAGTLDP G+L+V +GKATKL+D
Sbjct: 4 NNPVDGILVVNKPKGVTSFDVVAKVRRAVGQKKVGHAGTLDPNVDGVLVVALGKATKLID 63
Query: 365 RYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPM 423
Q K Y G LG AT T D D V+ +P D I +A G I QVPPM
Sbjct: 64 ELQARPKRYIGEITLGFATETEDLDGAVVAEQPITTPYTDTAIDQAIQQLNGPIQQVPPM 123
Query: 424 FSAIKVGGEKMYDKARRGESIELSPRRISIFQF---DIERSLEDRQNLIFRVTCSKGTYI 480
FSA+KV G+++Y+ AR GE++ R I+ F R + +Q F T SKGTYI
Sbjct: 124 FSAVKVAGKRLYEYARAGETVTRPVRDAMIYDFHRTSAVRYQQQQQKFNFEATVSKGTYI 183
Query: 481 RSLCADFGKALGSCAHLTALRR 502
R+L D GK L A +T+L R
Sbjct: 184 RTLAVDTGKQLEVPATMTSLTR 205
>gi|402756196|ref|ZP_10858452.1| tRNA pseudouridine synthase B [Acinetobacter sp. NCTC 7422]
Length = 297
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 85/211 (40%), Positives = 122/211 (57%), Gaps = 2/211 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+ L+NKP G +S + K+RRL +K GH G LDP+ATGLL +C+G+ATK
Sbjct: 12 VFLLNKPLGLSSNSALQKVRRLFNAQKAGHTGALDPLATGLLPICLGEATKFSHYLLDSS 71
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y +LG+ T+T D + ++Q+ + E I + FRG+I QVPPM+SA+K
Sbjct: 72 KRYQTTVKLGQTTATGDVEGEILQQREVPALTQERIEQILEQFRGDIQQVPPMYSALKRD 131
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKA 490
G +Y+ AR+G IE R ++I+ + ED +L VTCSKGTYIR L D G+A
Sbjct: 132 GRPLYELARKGIEIEREARPVTIYDLSLVDFTED--SLTLDVTCSKGTYIRVLGEDIGEA 189
Query: 491 LGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
LG HLT L R G + + ++ + LE+
Sbjct: 190 LGCGGHLTQLHRTQTGHFEINPSYTIEYLED 220
>gi|149012263|ref|ZP_01833332.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae SP19-BS75]
gi|147763589|gb|EDK70524.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae SP19-BS75]
Length = 292
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 89/217 (41%), Positives = 128/217 (58%), Gaps = 4/217 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ + K G TS KLR+++ KK+GH GTLDP G+L + VGKAT++V+ Q
Sbjct: 4 IINLKKEAGMTSHDAVFKLRKILGTKKIGHGGTLDPDVVGVLPIAVGKATRMVEFMQDEG 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDED-IRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V+ P + DE + +A AS G I Q+PPM+SA+KV
Sbjct: 64 KIYEGEITLGYSTTTEDASGEVVAETPVLSLLDEKLVDEAIASLTGPITQIPPMYSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIERSLE-DRQ--NLIFRVTCSKGTYIRSLCAD 486
G K+Y+ AR G+ +E R+++I+QF+ + D Q FRV CSKGTYIR+L D
Sbjct: 124 NGRKLYEYARAGQEVERPERQVTIYQFERTSPISYDGQLARFTFRVKCSKGTYIRTLSVD 183
Query: 487 FGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
G+ LG AH++ L R S +DA +E+ E +
Sbjct: 184 LGEKLGYAAHMSHLTRTSAAGLQLEDALTLEEIAEKV 220
>gi|389774738|ref|ZP_10192857.1| tRNA pseudouridine synthase B [Rhodanobacter spathiphylli B39]
gi|388438337|gb|EIL95092.1| tRNA pseudouridine synthase B [Rhodanobacter spathiphylli B39]
Length = 308
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 89/213 (41%), Positives = 125/213 (58%), Gaps = 4/213 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+VL++KP G +S +RRL++ K GH G LDP+ATGLL +C G+ATKL G
Sbjct: 15 IVLLDKPLGLSSNQALQAVRRLLRASKGGHTGALDPLATGLLPLCFGEATKLAGSLLGAR 74
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y RLG +T T D++ +++R P + I A A RG I QVPPM+SA+K
Sbjct: 75 KAYLAECRLGISTDTADSEGEIVRRLPVPPLDAAAIETALARLRGHILQVPPMYSALKHD 134
Query: 431 GEKMYDKARRGESIELSPRRISIFQFD-IERSLEDRQNLIFRVTCSKGTYIRSLCADFGK 489
GE++Y KARRGE +++ R + + + + +ER D + L V C GTY+RSL D G+
Sbjct: 135 GERLYAKARRGEVVDVPAREVDVHRLELLER---DGETLRLLVECGSGTYVRSLAVDLGE 191
Query: 490 ALGSCAHLTALRRDSIGQYSADDAWEFKELEEA 522
LG AHLTALRR + + +LE+A
Sbjct: 192 DLGCGAHLTALRRIWVEPFREPQMVTLAQLEQA 224
>gi|409386705|ref|ZP_11239067.1| tRNA pseudouridine synthase B [Lactococcus raffinolactis 4877]
gi|399206079|emb|CCK19982.1| tRNA pseudouridine synthase B [Lactococcus raffinolactis 4877]
Length = 298
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 87/219 (39%), Positives = 133/219 (60%), Gaps = 6/219 (2%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
+ K G TS V KLR++++ KK+GH GTLDP TG+L + VGKAT++++ K Y
Sbjct: 9 IYKEAGMTSHDVVFKLRKILQTKKIGHGGTLDPDVTGVLPIAVGKATRVIEYMTEAGKVY 68
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHI-KDEDIRKAAASFRGEIWQVPPMFSAIKVGGE 432
G LG +T T DA V+ P ++ +I A A F GEI Q+PPM+SA+KV G
Sbjct: 69 EGQVTLGYSTETEDASGAVVASTPVINMPTTTEIDAAMADFVGEITQIPPMYSAVKVNGR 128
Query: 433 KMYDKARRGESIELSPRRISIFQFD--IERSLEDRQNLI---FRVTCSKGTYIRSLCADF 487
K+Y+ AR GE+++ R+++I +F E +L+ L+ FRV CSKGTY+R+L D
Sbjct: 129 KLYEYARAGETVDRPERQVTISEFSRTSEPTLDAANGLVRFDFRVVCSKGTYVRTLAVDL 188
Query: 488 GKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAITKN 526
G+ LG +H++ L+R + + D A++ E+E+ +N
Sbjct: 189 GEKLGFASHMSYLQRTASAGLTIDKAFKLSEIEQLKAEN 227
>gi|374622804|ref|ZP_09695325.1| tRNA pseudouridine synthase B [Ectothiorhodospira sp. PHS-1]
gi|373941926|gb|EHQ52471.1| tRNA pseudouridine synthase B [Ectothiorhodospira sp. PHS-1]
Length = 308
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 88/210 (41%), Positives = 124/210 (59%), Gaps = 2/210 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L++KP G+TS +++ L K KK GH G+LDP+ATGLL +C G+ATK+
Sbjct: 14 LILLDKPVGYTSNQALQRVKYLFKAKKAGHTGSLDPLATGLLPLCFGEATKVSAFLLDAD 73
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y V RLG T+T DA+ VI+ P + D I FRG I QVPPM+SA+K
Sbjct: 74 KQYRTVCRLGVTTTTADAEGEVIETLPVPELDDARIETVLDRFRGPIEQVPPMYSALKHQ 133
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKA 490
G+++YD AR+G +E +PR ++I Q D L V+CSKGTYIR+L D G+A
Sbjct: 134 GQRLYDLARKGREVERAPRPVTIHQLHCLARTAD--TLTLDVSCSKGTYIRTLVEDIGRA 191
Query: 491 LGSCAHLTALRRDSIGQYSADDAWEFKELE 520
LG AH+ LRR + + A +++E
Sbjct: 192 LGCGAHVIELRRVGLTPFEAPRMVTLEQIE 221
>gi|315613301|ref|ZP_07888210.1| tRNA pseudouridine synthase B [Streptococcus sanguinis ATCC 49296]
gi|315314536|gb|EFU62579.1| tRNA pseudouridine synthase B [Streptococcus sanguinis ATCC 49296]
Length = 300
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 92/215 (42%), Positives = 126/215 (58%), Gaps = 8/215 (3%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ + K G TS KLR+++ KK+GH GTLDP G+L + VGKAT++V+ Q
Sbjct: 12 IINLKKEAGMTSHDAVFKLRKILGTKKIGHGGTLDPDVVGVLPIAVGKATRMVEFMQDEG 71
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIR-KAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V+ P + DE I +A AS G I Q+PPM+SA+KV
Sbjct: 72 KVYEGEITLGYSTTTEDASGEVVAETPVLSLLDETIVDEAIASLTGPITQIPPMYSAVKV 131
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIER----SLEDR-QNLIFRVTCSKGTYIRSLC 484
G K+Y+ AR G+ +E R+++I+QF ER S ED FRV CSKGTYIR+L
Sbjct: 132 NGRKLYEYARAGQEVERPERQVAIYQF--ERTSPISYEDHLARFTFRVKCSKGTYIRTLS 189
Query: 485 ADFGKALGSCAHLTALRRDSIGQYSADDAWEFKEL 519
D G+ LG AH++ L R S +DA E+
Sbjct: 190 VDLGEKLGYAAHMSHLTRTSAAGLQLEDALTLNEI 224
>gi|383648133|ref|ZP_09958539.1| tRNA pseudouridine synthase B [Streptomyces chartreusis NRRL 12338]
Length = 301
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 89/221 (40%), Positives = 125/221 (56%), Gaps = 7/221 (3%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G+TS V K+R + + ++VGHAGTLDPMATG+L++ V KATKL+
Sbjct: 11 LVIVDKPSGFTSHDVVAKMRGIARTRRVGHAGTLDPMATGVLVLGVEKATKLLGHLALTE 70
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y G RLG+ T T DA+ + + + I A G I QVP SAIK+
Sbjct: 71 KEYLGTIRLGQNTLTDDAEGEITSATDASGVTRDAIDAGVAKLTGAIMQVPSKVSAIKIN 130
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDI----ERSLEDRQ---NLIFRVTCSKGTYIRSL 483
G + Y +AR GE ++ R++++ F + E ED +L+ V CS GTYIR+L
Sbjct: 131 GVRSYKRAREGEEFDIPARQVTVSSFGVHDVREAVAEDGTAVLDLVVSVVCSSGTYIRAL 190
Query: 484 CADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAIT 524
D G LG HLTALRR +G Y D A +L++ +T
Sbjct: 191 ARDLGADLGVGGHLTALRRTRVGPYKLDAARTLDQLQQELT 231
>gi|418966270|ref|ZP_13518018.1| tRNA pseudouridine synthase B [Streptococcus constellatus subsp.
constellatus SK53]
gi|383340650|gb|EID18943.1| tRNA pseudouridine synthase B [Streptococcus constellatus subsp.
constellatus SK53]
Length = 292
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 88/222 (39%), Positives = 132/222 (59%), Gaps = 4/222 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ + K G TS KLR+++K KKVGH GTLDP G+L + VGKAT+LV+ Q
Sbjct: 4 IINLRKEAGMTSHDAVFKLRKILKTKKVGHGGTLDPDVVGVLPIAVGKATRLVEFMQEEG 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDED-IRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA +++R P + +E I +A S GEI Q+PPM+SA+K+
Sbjct: 64 KVYEGEITLGCSTTTEDASGDILERTPVTELLEEVLIDEAIESMTGEIRQIPPMYSAVKI 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIERSL---EDRQNLIFRVTCSKGTYIRSLCAD 486
G K+Y+ AR G+ +E R+++I+ F+ + +++ FRV CSKGTY+R+L D
Sbjct: 124 NGRKLYEYARAGQEVERPERQVTIYSFERTSPISYEDEKARFRFRVKCSKGTYVRTLSVD 183
Query: 487 FGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAITKNYF 528
G LG +H++ L R S S +DA E+ E + + F
Sbjct: 184 LGVKLGLASHMSQLTRISSAGMSLEDALTLDEIAERVAEEDF 225
>gi|289167855|ref|YP_003446124.1| tRNA pseudouridine synthase B [Streptococcus mitis B6]
gi|288907422|emb|CBJ22259.1| tRNA pseudouridine synthase B [Streptococcus mitis B6]
Length = 292
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 89/217 (41%), Positives = 127/217 (58%), Gaps = 4/217 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ + K G TS KLR+++ KK+GH GTLDP G+L + VGKAT+LV+ Q
Sbjct: 4 IINLKKEAGMTSHDAVFKLRKILGTKKIGHGGTLDPDVVGVLPIAVGKATRLVEFMQDEG 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDED-IRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V+ P DE + +A AS G I Q+PPM+SA+KV
Sbjct: 64 KVYEGEITLGYSTTTEDASGEVVAETPVLSPLDEKLVDEAIASLTGPIIQIPPMYSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNL---IFRVTCSKGTYIRSLCAD 486
G K+Y+ AR G+ +E R+++I+QF+ + +L FRV CSKGTYIR+L D
Sbjct: 124 NGRKLYEYARAGQEVERPERQVTIYQFERTSPISYEGHLARFTFRVKCSKGTYIRTLSVD 183
Query: 487 FGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
G+ LG AH++ L R S +DA +E+ E +
Sbjct: 184 LGEKLGYAAHMSHLTRTSAAGLQLEDALTLEEIAEKV 220
>gi|334116528|ref|ZP_08490620.1| tRNA pseudouridine synthase B [Microcoleus vaginatus FGP-2]
gi|333461348|gb|EGK89953.1| tRNA pseudouridine synthase B [Microcoleus vaginatus FGP-2]
Length = 313
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 84/217 (38%), Positives = 131/217 (60%), Gaps = 4/217 (1%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
+NKP G TS G++RRL+K+K+VGH GTLDP TG+L + +GKAT+L+ +Y K Y
Sbjct: 9 LNKPAGMTSHDCVGRVRRLLKLKRVGHGGTLDPAVTGVLPIALGKATRLL-QYLQHNKAY 67
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEK 433
G R G T+T D + +I P + E ++ A F G+I Q PP FSA++VGG++
Sbjct: 68 RGTIRFGLTTATDDLEGEIIHSRPVPELSLEKVQAALPKFLGKIEQFPPSFSAVQVGGKR 127
Query: 434 MYDKARRGESIELSPRRISIFQFDIE--RSLEDRQNLIFRVTCSKGTYIRSLCADFGKAL 491
+Y+ AR+GE++E++ R++ +F+ +I RS D L + C GTYIR++ D G L
Sbjct: 128 LYELARKGETVEVAARKVEVFRLEILDWRS-GDFPELDLSIACGAGTYIRAIARDLGAVL 186
Query: 492 GSCAHLTALRRDSIGQYSADDAWEFKELEEAITKNYF 528
+ L L R +S +++ F++LE + +N F
Sbjct: 187 NAGGTLACLTRTESSGFSIEESLSFEQLELQLQENKF 223
>gi|384082726|ref|ZP_09993901.1| tRNA pseudouridine synthase B [gamma proteobacterium HIMB30]
Length = 318
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 91/211 (43%), Positives = 122/211 (57%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++V+KP+G TS V +L+R + KKVGH G LDPMATG+L + G+ATK
Sbjct: 13 ILIVDKPQGLTSNGVVSRLKRWSQAKKVGHTGALDPMATGVLPIVFGEATKFSQYGLDAH 72
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
KGY +LG AT T DAD V+ +P + + I ++ G QVPPM SA+K
Sbjct: 73 KGYLARIQLGSATDTLDADGNVVLVKPIPELTESKIATVLSTLTGAQMQVPPMVSALKYQ 132
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKA 490
G+ +Y AR+G+ +E SPR I IF D+ + + V CSKGTYIRSL G A
Sbjct: 133 GQPLYKLARQGKEVERSPRSIQIFSNDLMQFDASEGWIDICVRCSKGTYIRSLAESIGDA 192
Query: 491 LGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
LGS AHL+ LRRD G +S + A + LE
Sbjct: 193 LGSVAHLSQLRRDLSGGFSLEQAHAWNALES 223
>gi|419779326|ref|ZP_14305202.1| tRNA pseudouridine(55) synthase [Streptococcus oralis SK10]
gi|383186354|gb|EIC78824.1| tRNA pseudouridine(55) synthase [Streptococcus oralis SK10]
Length = 292
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 93/219 (42%), Positives = 128/219 (58%), Gaps = 8/219 (3%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ + K G TS KLR+++ KK+GH GTLDP G+L + VGKAT++V+ Q
Sbjct: 4 IINLKKEAGMTSHDAVFKLRKILGTKKIGHGGTLDPDVVGVLPIAVGKATRMVEFMQDEG 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDED-IRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V+ P DE + +A AS G I Q+PPM+SA+KV
Sbjct: 64 KVYDGEITLGYSTTTEDASGEVVAETPVLSPLDEKLVDEAIASLTGPITQIPPMYSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIER----SLEDR-QNLIFRVTCSKGTYIRSLC 484
G K+Y+ AR G+ +E R+++I+QF ER S ED FRV CSKGTYIR+L
Sbjct: 124 DGRKLYEYARAGQEVERPERQVTIYQF--ERTSPISYEDHLARFTFRVKCSKGTYIRTLS 181
Query: 485 ADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
D G+ LG AH++ L R S +DA KE+ E +
Sbjct: 182 VDLGEKLGYAAHMSHLTRTSAAGLQLEDALTLKEIAEKV 220
>gi|421865344|ref|ZP_16297024.1| tRNA pseudouridine synthase B ## tRNA Psi55 [Burkholderia
cenocepacia H111]
gi|358074807|emb|CCE47902.1| tRNA pseudouridine synthase B ## tRNA Psi55 [Burkholderia
cenocepacia H111]
Length = 310
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 88/212 (41%), Positives = 126/212 (59%), Gaps = 3/212 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L++KP G +S + +RL+ KK GH GTLDP+A+GLL +C G+ATK
Sbjct: 19 VLLLDKPVGLSSNDALIRAKRLLLAKKAGHTGTLDPLASGLLPLCFGEATKFSQDLLDAD 78
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y RLG+ T+T DA+ VI P E + + A F G+I QVPPM+SA+K
Sbjct: 79 KTYEATMRLGQRTATGDAEGDVIDTRPVECDR-AAVEAALVRFTGDIVQVPPMYSALKRD 137
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKA 490
G+ +Y+ AR G+++E R ++I D+ + N+ FRVTCSKGTY+R+L D G+A
Sbjct: 138 GKPLYEYARAGQTVEREGRNVTIHALDLLAC--ELPNVTFRVTCSKGTYVRTLAEDIGEA 195
Query: 491 LGSCAHLTALRRDSIGQYSADDAWEFKELEEA 522
LG AHLT LRR +G + + A L +A
Sbjct: 196 LGCGAHLTMLRRTGVGALTLEHAVTLDALSDA 227
>gi|422821453|ref|ZP_16869646.1| tRNA pseudouridine synthase B [Streptococcus sanguinis SK353]
gi|324990881|gb|EGC22816.1| tRNA pseudouridine synthase B [Streptococcus sanguinis SK353]
Length = 292
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 91/222 (40%), Positives = 130/222 (58%), Gaps = 4/222 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ + K G TS KLR+++K KK+GH GTLDP G+L + VGKAT+LV+ Q
Sbjct: 4 IINLRKEAGMTSHDAVFKLRKILKTKKIGHGGTLDPDVVGVLPIAVGKATRLVEFMQEEG 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDED-IRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA ++ R P + +E I +A S GEI Q+PPM+SA+KV
Sbjct: 64 KVYEGEITLGCSTTTEDASGDILDRTPVTELLEEALIDEAMESMTGEIRQIPPMYSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIERSL--EDRQ-NLIFRVTCSKGTYIRSLCAD 486
G K+Y+ AR G+ +E R+++I+ F+ + ED Q FRV CSKGTY+R+L D
Sbjct: 124 NGRKLYEYARAGQEVERPERQVTIYSFERTSPIYYEDEQARFRFRVKCSKGTYVRTLSVD 183
Query: 487 FGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAITKNYF 528
G LG +H++ L R S S +DA E+ E + F
Sbjct: 184 LGAKLGFSSHMSQLTRTSSAGMSLEDALTLDEIAERVAVEDF 225
>gi|239826660|ref|YP_002949284.1| tRNA pseudouridine synthase B [Geobacillus sp. WCH70]
gi|239806953|gb|ACS24018.1| tRNA pseudouridine synthase B [Geobacillus sp. WCH70]
Length = 302
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 87/218 (39%), Positives = 132/218 (60%), Gaps = 5/218 (2%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L++KP G TS ++RR++++KKVGH GTLDP +G+L +C+GKAT++ + G
Sbjct: 4 VLLLHKPPGMTSHDCVARIRRMLQIKKVGHTGTLDPNVSGVLPICIGKATRIAEFLTGAT 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDED-IRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG AT+T D+ +I ++ + + D I GE+ Q PPM+SA+KV
Sbjct: 64 KTYEGEVTLGIATTTEDSTGEIIAKQKVDRVIPRDEIEAVFRQLTGEVAQTPPMYSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDI--ERS--LEDRQNLIFRVTCSKGTYIRSLCA 485
G+K+Y+ AR G +E R ++I + + ER D + FRVTCSKGTYIR+L
Sbjct: 124 KGKKLYEYARAGIEVERPTRIVTIHELTLLDERDAFAGDIVSFRFRVTCSKGTYIRTLAV 183
Query: 486 DFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
G+ LG AH++ L R + G +S D F++LE+ I
Sbjct: 184 MIGERLGYPAHMSDLVRTASGPFSLQDCVTFEQLEQYI 221
>gi|225374832|ref|ZP_03752053.1| hypothetical protein ROSEINA2194_00453 [Roseburia inulinivorans DSM
16841]
gi|225213293|gb|EEG95647.1| hypothetical protein ROSEINA2194_00453 [Roseburia inulinivorans DSM
16841]
Length = 311
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 88/213 (41%), Positives = 127/213 (59%), Gaps = 3/213 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ V K KG+TSF V KLR + K KK+GH GTLDP A G+L VC+GKATK+ D
Sbjct: 5 IINVYKEKGYTSFDVVAKLRGIFKQKKIGHTGTLDPDAEGVLPVCLGKATKVCDLLTDKS 64
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y V LG+ T T D V++ + + + +E +R+ SF G+ Q+PPM+SA+KV
Sbjct: 65 KEYEAVLLLGKVTDTQDITGTVLEEKDVK-VTEEAVRETVLSFVGDYMQIPPMYSALKVN 123
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKA 490
G+K+ D AR G+++E R + I DI R + RV CSKGTYIR+LC D G+
Sbjct: 124 GKKLCDLAREGKTVERQARPVKILTIDILDVTLPRVRM--RVHCSKGTYIRTLCQDIGEK 181
Query: 491 LGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
LG + +L R + ++ DA + E+E+ +
Sbjct: 182 LGCGGCMESLLRTQVSEFLLKDALKIGEIEQLV 214
>gi|229490936|ref|ZP_04384771.1| tRNA pseudouridine synthase B [Rhodococcus erythropolis SK121]
gi|229322326|gb|EEN88112.1| tRNA pseudouridine synthase B [Rhodococcus erythropolis SK121]
Length = 306
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 88/215 (40%), Positives = 127/215 (59%), Gaps = 9/215 (4%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++V+K G TS V + R+L+ +KVGHAGTLDPMATG+L++ V +ATKL+
Sbjct: 16 ILIVDKEAGITSHDVVARCRKLLNTRKVGHAGTLDPMATGVLVLGVERATKLLGLLALTT 75
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K YS RLG AT T DA+ V+ + D +I A+ G+I Q+P SAIKV
Sbjct: 76 KAYSATIRLGAATDTDDAEGEVLTSADASQVTDAEIAAIVATLTGDIKQIPASVSAIKVD 135
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQ------NLIFRVTCSKGTYIRSLC 484
G++ + R GE++EL+PR +++ F++ L R +L V CS GTYIRSL
Sbjct: 136 GQRAHALVRAGETVELAPRPVTVSTFEV---LARRDVPGGFVDLDVDVECSSGTYIRSLA 192
Query: 485 ADFGKALGSCAHLTALRRDSIGQYSADDAWEFKEL 519
D G+ LG HLTALRR +G ++ + A ++L
Sbjct: 193 RDLGRELGVGGHLTALRRTRVGPFTLEHARTLEDL 227
>gi|254304272|ref|ZP_04971630.1| pseudouridylate synthase [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
gi|148324464|gb|EDK89714.1| pseudouridylate synthase [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
Length = 290
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 90/218 (41%), Positives = 138/218 (63%), Gaps = 3/218 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++VNKPKG TSF V KL++++K KK+GH GTLDP+ATG++++C+GKATKL +
Sbjct: 7 IIIVNKPKGITSFDVIRKLKKILKTKKIGHTGTLDPLATGVMLICIGKATKLASDLEAKD 66
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y F +G AT T+D + I E + ED+ ++ F G I QVPPM+SAIK+
Sbjct: 67 KVYIADFDIGYATDTYDIEGKKIA-ENIIDVSKEDLEQSIKKFIGNIKQVPPMYSAIKID 125
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKA 490
G K+Y AR+G +E R ++I ++ +++ + + SKG YIRSL D G+
Sbjct: 126 GNKLYHLARKGIEVERPERDVTIEYINLLDFKDNKAKI--KTKVSKGCYIRSLIYDIGQD 183
Query: 491 LGSCAHLTALRRDSIGQYSADDAWEFKELEEAITKNYF 528
LG+ A +TAL+R +G YS +D++ +++EE + N F
Sbjct: 184 LGTYATMTALQRKQVGDYSLEDSYSLEQIEEMVLNNDF 221
>gi|451936501|ref|YP_007460355.1| tRNA pseudouridine synthase B [Candidatus Kinetoplastibacterium
oncopeltii TCC290E]
gi|451777424|gb|AGF48399.1| tRNA pseudouridine synthase B [Candidatus Kinetoplastibacterium
oncopeltii TCC290E]
Length = 237
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 90/220 (40%), Positives = 122/220 (55%), Gaps = 7/220 (3%)
Query: 301 PPTWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKAT 360
P DG F L++KP G TS K+RR + +KK GH GTLDP ATGLL+ C GKAT
Sbjct: 3 PHQIDGFF----LLDKPAGITSNLALQKVRRFLNIKKAGHTGTLDPFATGLLVCCFGKAT 58
Query: 361 KLVDRYQGMIKGYSGVFRLGEATSTWDADSPVI-QREPWEHIKDEDIRKAAASFRGEIWQ 419
K + + K Y +LGE T T D V+ Q ++ I I K F GEI Q
Sbjct: 59 KKSNIFLNASKSYIATIKLGEETDTGDLTGKVVSQSSDYKFIDISSIEKTLVHFMGEIEQ 118
Query: 420 VPPMFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTY 479
+PPM+SAIKV G +Y AR G I PR+++I+ ++ + L ++CSKGTY
Sbjct: 119 IPPMYSAIKVNGMPLYKYARTGIDIYRDPRKVTIYNINLINFSDHTFKL--ELSCSKGTY 176
Query: 480 IRSLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKEL 519
IR+L D G+ LG AHL +LRR +G + + + + L
Sbjct: 177 IRTLAQDIGRKLGCFAHLISLRRTKVGPFLLESSTTLENL 216
>gi|414158615|ref|ZP_11414909.1| tRNA pseudouridine synthase B [Streptococcus sp. F0441]
gi|410871160|gb|EKS19117.1| tRNA pseudouridine synthase B [Streptococcus sp. F0441]
Length = 292
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 90/217 (41%), Positives = 127/217 (58%), Gaps = 4/217 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ + K G TS KLR+++ KK+GH GTLDP G+L + VGKAT++V+ Q
Sbjct: 4 IINLRKEAGMTSHDAVFKLRKILGTKKIGHGGTLDPDVVGVLPIAVGKATRMVEFMQDEG 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIR-KAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V+ P DE I +A AS G I Q+PPMFSA+KV
Sbjct: 64 KVYEGEITLGYSTTTEDASGEVVAETPVLSPLDETIVDEAIASLTGPITQIPPMFSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNL---IFRVTCSKGTYIRSLCAD 486
G K+Y+ AR G+ +E R+++I+QF+ + +L FRV CSKGTYIR+L D
Sbjct: 124 NGRKLYEYARAGQEVERPERQVTIYQFERTSPISYDGHLARFTFRVKCSKGTYIRTLSVD 183
Query: 487 FGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
G+ LG AH++ L R S +DA +E+ E +
Sbjct: 184 LGEKLGYAAHMSHLTRTSAAGLQLEDALTLEEIAEKV 220
>gi|415886617|ref|ZP_11548397.1| tRNA pseudouridine synthase B [Bacillus methanolicus MGA3]
gi|387587304|gb|EIJ79627.1| tRNA pseudouridine synthase B [Bacillus methanolicus MGA3]
Length = 304
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 84/213 (39%), Positives = 134/213 (62%), Gaps = 5/213 (2%)
Query: 316 KPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSG 375
KPKG TS KLR+++K+KK+GH GTLDP G+L +C+GKATK+ + K Y G
Sbjct: 9 KPKGMTSHDCVFKLRKMLKIKKIGHTGTLDPDVNGVLPICIGKATKVAEYITEAGKTYEG 68
Query: 376 VFRLGEATSTWDADSPVIQREP-WEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEKM 434
+G +T+T DA ++++ P + E+I + SFRGEI Q PPM+SA+KV G+++
Sbjct: 69 EVTIGYSTTTEDASGDIVEQMPGIKTFTREEILQVLHSFRGEIVQTPPMYSAVKVNGKRL 128
Query: 435 YDKARRGESIELSPRRISIFQFDI--ERSLEDRQNLI--FRVTCSKGTYIRSLCADFGKA 490
Y+ AR G +E R+++I+ ++ ER++ + + + FRV+CSKGTYIR+L G+
Sbjct: 129 YEYARLGIEVERPSRKVTIYSIELLDERNIFEGETVTFRFRVSCSKGTYIRTLAVMIGEK 188
Query: 491 LGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
LG AH++ L R ++ D+ F++++ I
Sbjct: 189 LGFPAHMSDLIRIQSAGFTLADSLTFEQIQTMI 221
>gi|313124026|ref|YP_004034285.1| tRNA pseudouridine synthase b [Lactobacillus delbrueckii subsp.
bulgaricus ND02]
gi|312280589|gb|ADQ61308.1| tRNA pseudouridine synthase B [Lactobacillus delbrueckii subsp.
bulgaricus ND02]
Length = 298
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 87/220 (39%), Positives = 132/220 (60%), Gaps = 6/220 (2%)
Query: 308 FGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQ 367
F +++++K G TS V KLRRL+K KK+GHAGTLDP TG+L + +G+ATKL++
Sbjct: 2 FNGIIVIDKAAGMTSGDVVYKLRRLLKQKKIGHAGTLDPEVTGVLPIALGQATKLIELMH 61
Query: 368 GMIKGYSGVFRLGEATSTWDADSPVI-QREPWEHIKDEDIRKAAASFRGEIWQVPPMFSA 426
K Y G LG AT ++D + ++ +R + + D+ I+ A F GEI Q PP++SA
Sbjct: 62 ERPKAYVGEGMLGLATDSYDLEGKILAERALSQPVSDQAIKAAMEKFTGEIVQQPPIYSA 121
Query: 427 IKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLE-----DRQNLIFRVTCSKGTYIR 481
++V G+++Y+ AR G +E R + +F++D+ + RQ + V CSKGTY+R
Sbjct: 122 VRVNGKRLYEYAREGIPVERPKRTVQVFRYDLTAPSQFDPEKGRQTFTYEVECSKGTYVR 181
Query: 482 SLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
SL D G+ LG A +T LRR + Y DA +EL +
Sbjct: 182 SLVNDLGEELGLPAVMTKLRRTASSGYKLQDAVTLEELAD 221
>gi|374323515|ref|YP_005076644.1| tRNA pseudouridine synthase b [Paenibacillus terrae HPL-003]
gi|357202524|gb|AET60421.1| tRNA pseudouridine synthase b [Paenibacillus terrae HPL-003]
Length = 311
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 87/225 (38%), Positives = 134/225 (59%), Gaps = 9/225 (4%)
Query: 303 TWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKL 362
TW+G ++ V KP G+TS V K RRL+ +K++GH GTLDP TG+L +C+G+AT++
Sbjct: 10 TWEG----VLPVYKPAGFTSHDVVAKARRLLGMKRIGHTGTLDPQVTGVLPLCLGRATRV 65
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQR--EPWEHIKDEDIRKAAASFRGEIWQV 420
V+ Q + K Y RLG AT T D + ++ P E + +E+ + F G I QV
Sbjct: 66 VEYMQELPKEYHATLRLGLATDTEDLTGTITEKCDHPVE-VTEEEAKAVLERFVGTISQV 124
Query: 421 PPMFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQ--NLIFRVTCSKGT 478
PPM+SA+KV G+++Y+ AR G+++E R ++I++ ++ E ++ FR CSKGT
Sbjct: 125 PPMYSALKVDGKRLYELAREGKTVERKSREVTIYELEMTGFAETGSYVDISFRALCSKGT 184
Query: 479 YIRSLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
YIR+LC D G+ LG + + L R AD F+E+E +
Sbjct: 185 YIRTLCVDIGRELGYPSTMVKLERTMSAGIPADRCLTFEEIERYV 229
>gi|384175408|ref|YP_005556793.1| tRNA pseudouridine synthase B [Bacillus subtilis subsp. subtilis
str. RO-NN-1]
gi|349594632|gb|AEP90819.1| tRNA pseudouridine synthase B [Bacillus subtilis subsp. subtilis
str. RO-NN-1]
Length = 309
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 86/214 (40%), Positives = 129/214 (60%), Gaps = 4/214 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L++KP G TS K+R+L+K KKVGH GTLDP +G+L +CVG+ATK+V+
Sbjct: 5 VLLLHKPVGMTSHDCVMKIRKLLKTKKVGHTGTLDPEVSGVLPICVGRATKIVEYLTEKS 64
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y LG +T+T D ++ +P H I D+ K S +G+ Q+PPM+SA+KV
Sbjct: 65 KTYDAEITLGFSTTTEDQTGETVEAKPVNHDINKADVEKVLNSLKGKQEQIPPMYSAVKV 124
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIERSLE---DRQNLIFRVTCSKGTYIRSLCAD 486
G+K+Y+ AR G +E R I+I + ++ + + F VTCSKGTY+R+L
Sbjct: 125 NGKKLYEYARAGIEVERPKRMITIEDIALTTEIKHHGETASFRFTVTCSKGTYVRTLAVM 184
Query: 487 FGKALGSCAHLTALRRDSIGQYSADDAWEFKELE 520
G+ LG AH++ L R + G +S D+ + F ELE
Sbjct: 185 IGEKLGYPAHMSHLIRTASGDFSLDECFTFDELE 218
>gi|340750144|ref|ZP_08686991.1| tRNA pseudouridine synthase B [Fusobacterium mortiferum ATCC 9817]
gi|229419791|gb|EEO34838.1| tRNA pseudouridine synthase B [Fusobacterium mortiferum ATCC 9817]
Length = 285
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 88/211 (41%), Positives = 128/211 (60%), Gaps = 4/211 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ +NKP G TSF V LRR++K K++GH GTLDP+A G+L+VC+G+AT+LV +G
Sbjct: 4 IININKPSGITSFDVIRVLRRVLKEKRIGHTGTLDPLAEGVLVVCLGRATRLVQDIEGYS 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y+ F LG T T+D + I+ + +++ F G+I Q+PPM+SA+KV
Sbjct: 64 KIYTAGFELGYRTDTYDIEGKTIEESEKKSATRDELDIVLKKFIGDIKQIPPMYSALKVD 123
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLE-DRQNLIFRVTCSKGTYIRSLCADFGK 489
G+K+YD AR+G +E R I I D LE D R SKGTYIRSL D G+
Sbjct: 124 GQKLYDLARKGIEVERKARDIHI---DFIEVLEFDGVKGKIRCGVSKGTYIRSLIDDMGR 180
Query: 490 ALGSCAHLTALRRDSIGQYSADDAWEFKELE 520
LG+ A + +L R+ +G S D A+ +++E
Sbjct: 181 ELGTLATMNSLVREKVGDSSIDKAFTLEDIE 211
>gi|342163833|ref|YP_004768472.1| tRNA pseudouridine synthase B [Streptococcus pseudopneumoniae
IS7493]
gi|341933715|gb|AEL10612.1| tRNA pseudouridine synthase B [Streptococcus pseudopneumoniae
IS7493]
Length = 292
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 90/217 (41%), Positives = 126/217 (58%), Gaps = 4/217 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ + K G TS KLR+++ KK+GH GTLDP G+L + VGKAT++V+ Q
Sbjct: 4 IINLKKEAGMTSHDAVFKLRKILGTKKIGHGGTLDPDVVGVLPIAVGKATRMVEFMQDEG 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIR-KAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V+ P DE I +A AS G I Q+PPM+SA+KV
Sbjct: 64 KVYEGEITLGYSTTTEDASGEVVAETPVLSPLDETIVDEAIASLTGPISQIPPMYSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNL---IFRVTCSKGTYIRSLCAD 486
G K+Y+ AR G+ +E R+++I+QFD + L FRV CSKGTYIR+L D
Sbjct: 124 NGRKLYEYARAGQEVERPERQVTIYQFDRTSPISYDDYLARFTFRVKCSKGTYIRTLSVD 183
Query: 487 FGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
G+ LG AH++ L R S +DA +E+ E +
Sbjct: 184 LGEKLGYAAHMSHLTRTSAAGLQLEDALTLEEIAEKV 220
>gi|225858995|ref|YP_002740505.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae 70585]
gi|225720215|gb|ACO16069.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae 70585]
Length = 292
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 90/217 (41%), Positives = 128/217 (58%), Gaps = 4/217 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ + K G TS KLR+++ KK+GH GTLDP G+L + VGKAT++V+ Q
Sbjct: 4 IINLKKEAGMTSHDAVFKLRKILGTKKIGHGGTLDPDVVGVLPIAVGKATRMVEFMQDEG 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDED-IRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V+ P DE + +A AS G I Q+PPM+SA+KV
Sbjct: 64 KIYEGEITLGYSTTTEDASGEVVAETPVLSPLDEKLVDEAIASLTGPITQIPPMYSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIERSLE-DRQ--NLIFRVTCSKGTYIRSLCAD 486
G K+Y+ AR G+ +E S R+++I+QF+ + D Q FRV CSKGTYIR+L D
Sbjct: 124 NGRKLYEYARAGQEVERSERQVTIYQFERTSPISYDGQLARFTFRVKCSKGTYIRTLSVD 183
Query: 487 FGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
G+ LG AH++ L R S +DA +E+ E +
Sbjct: 184 LGEKLGYAAHMSHLTRTSAAGLQLEDALTLEEIAEKV 220
>gi|354615318|ref|ZP_09033103.1| tRNA pseudouridine synthase B, partial [Saccharomonospora
paurometabolica YIM 90007]
gi|353220336|gb|EHB84789.1| tRNA pseudouridine synthase B, partial [Saccharomonospora
paurometabolica YIM 90007]
Length = 248
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 86/216 (39%), Positives = 128/216 (59%), Gaps = 5/216 (2%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++V+KP G TS V K RRL+ +KVGHAGTLDPMATG+L++ + +ATKL+
Sbjct: 14 LLIVDKPSGMTSHDVVAKARRLLGTRKVGHAGTLDPMATGVLVLGIERATKLLGHLSLDR 73
Query: 371 KGYSGVFRLGEATSTWDADSPVIQR---EPWEHIKDEDIRKAAASFRGEIWQVPPMFSAI 427
K Y LG AT+T DA+ V+ + + + D+ +R A + GEI QVP SA+
Sbjct: 74 KTYLATVVLGSATTTDDAEGEVLSEADPQAVDAVSDDAVRAAVTALTGEIDQVPSAVSAV 133
Query: 428 KVGGEKMYDKARRGESIELSPRRISIFQFDI--ERSLEDRQNLIFRVTCSKGTYIRSLCA 485
KV G + Y + R GE ++L R +++ +FD+ R E R + CS GTY+R+L
Sbjct: 134 KVDGRRAYARVRAGEDVDLPSRPVTVHRFDVLAVRREEGRLEFDAMIDCSSGTYVRALAR 193
Query: 486 DFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
D G ALG HL ALRR ++G ++ A +++E+
Sbjct: 194 DLGDALGVGGHLGALRRTTVGPFTLARARTLEQVEQ 229
>gi|296451310|ref|ZP_06893050.1| tRNA pseudouridine synthase B [Clostridium difficile NAP08]
gi|296880338|ref|ZP_06904301.1| tRNA pseudouridine synthase B [Clostridium difficile NAP07]
gi|296259916|gb|EFH06771.1| tRNA pseudouridine synthase B [Clostridium difficile NAP08]
gi|296428579|gb|EFH14463.1| tRNA pseudouridine synthase B [Clostridium difficile NAP07]
Length = 301
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 86/213 (40%), Positives = 133/213 (62%), Gaps = 6/213 (2%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ + KP G TS V ++R+++ +KKVGH GTLDP A+G+L +C+GKATK+ +
Sbjct: 4 IISILKPTGMTSHDVVSRVRKILNIKKVGHTGTLDPDASGVLPICIGKATKVCEVILNKD 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y LG +T T+DA ++++ +E+I++A + RGEI Q+PP++SA+KV
Sbjct: 64 KSYICELTLGISTDTYDASGEILKKVDDFKFSNEEIKRAFDTQRGEINQLPPIYSALKVN 123
Query: 431 GEKMYDKARRG--ESIELSPRRISIFQFDIERSLEDRQN-LIFRVTCSKGTYIRSLCADF 487
G++M D R G I L RR++I I L + N ++F V CSKGTY+RS+C D
Sbjct: 124 GKRMCDLVRSGRQSEITLKTRRVNIKNIKI---LSIKGNKVMFYVECSKGTYVRSICHDI 180
Query: 488 GKALGSCAHLTALRRDSIGQYSADDAWEFKELE 520
G+ LG AH++ L R S G++ D++ +ELE
Sbjct: 181 GEYLGCGAHMSFLNRTSSGKFDLDNSITLEELE 213
>gi|441508256|ref|ZP_20990180.1| tRNA pseudouridine synthase B [Gordonia aichiensis NBRC 108223]
gi|441447284|dbj|GAC48141.1| tRNA pseudouridine synthase B [Gordonia aichiensis NBRC 108223]
Length = 299
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 91/213 (42%), Positives = 124/213 (58%), Gaps = 2/213 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+K +G TS V + R+L ++VGHAGTLDPMATG+L+V V +ATKL+
Sbjct: 11 LVIVDKDEGITSHDVVSRCRKLFNTRRVGHAGTLDPMATGVLVVGVERATKLLGLLSLNT 70
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y+ RLG AT + D VI I DE I A+ G+I QVP SAIKV
Sbjct: 71 KSYTATIRLGAATDSDDRMGEVISGADASSITDEQIADVVATLTGDIEQVPAKVSAIKVD 130
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQ--NLIFRVTCSKGTYIRSLCADFG 488
G + + AR GE EL+ R +++ +FD+ ++ +L V CS GTYIRSL D G
Sbjct: 131 GRRAHALARTGEEFELAARPVTVSRFDVSARRDEGAFVDLDVVVECSAGTYIRSLARDLG 190
Query: 489 KALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
LG HLTALRR S+G ++ + A ++L E
Sbjct: 191 AELGVGGHLTALRRTSVGPFTLEHARTLEQLAE 223
>gi|347531978|ref|YP_004838741.1| tRNA pseudouridine synthase B [Roseburia hominis A2-183]
gi|345502126|gb|AEN96809.1| tRNA pseudouridine synthase B [Roseburia hominis A2-183]
Length = 307
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 88/216 (40%), Positives = 129/216 (59%), Gaps = 3/216 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ + K KG+TSF V KLR ++K +K+GH GTLDP A G+L VC+GKATK+ +
Sbjct: 5 IINIYKEKGFTSFDVVAKLRGILKTRKIGHTGTLDPDAEGVLPVCIGKATKICELLTDKT 64
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y V LG T T D + ++ +++ KA SF G+ QVPPM+SA+KV
Sbjct: 65 KEYEAVMLLGRTTDTQDVTGETLTQQEV-RCSAKEVEKAVLSFVGDYMQVPPMYSALKVD 123
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKA 490
G K+ D AR G ++E + R + IF +I S+E + RV CSKGTYIR+LC D G+
Sbjct: 124 GRKLCDLARAGVTVERAARPVHIFSIEI-LSIE-LPRVRMRVCCSKGTYIRTLCQDVGEV 181
Query: 491 LGSCAHLTALRRDSIGQYSADDAWEFKELEEAITKN 526
LG A + +L R +G+++ DA + E+E + +
Sbjct: 182 LGCGACMESLLRTRVGEFALADAIKLSEVEAYVIAH 217
>gi|384515902|ref|YP_005710994.1| tRNA pseudouridine synthase B [Corynebacterium ulcerans 809]
gi|334697103|gb|AEG81900.1| tRNA pseudouridine synthase B [Corynebacterium ulcerans 809]
Length = 303
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 91/225 (40%), Positives = 128/225 (56%), Gaps = 9/225 (4%)
Query: 307 PFGT--MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVD 364
P T +V+V+KP G TS V G+LRR+ K+VGHAGTLDPMATG+L+V + + TK +
Sbjct: 4 PLSTSGLVVVDKPAGMTSHDVVGRLRRIFGTKRVGHAGTLDPMATGVLVVGIERGTKFLA 63
Query: 365 RYQGMIKGYSGVFRLGEATSTWDADSPVI---QREPWEHIKDEDIRKAAASFRGEIWQVP 421
K Y RLG +T+T D + + I D++I A G I Q P
Sbjct: 64 HMVASTKSYRATIRLGMSTTTDDKEGEAVFAADTSTVSAITDDEIAAEIAKLTGHIMQRP 123
Query: 422 PMFSAIKVGGEKMYDKARRGESIELSPRRISIFQF---DIERSLE-DRQNLIFRVTCSKG 477
SAIK+ G++ + R G+ +E+ R ++I++F DI R+L + ++ VTCS G
Sbjct: 124 ASVSAIKINGKRAHQMVREGQEVEIPARPVTIYRFDVLDISRALSPEFIDIDVEVTCSSG 183
Query: 478 TYIRSLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEA 522
TYIRSL D G+AL HLTALRR S+G ++ DA +L A
Sbjct: 184 TYIRSLARDLGEALHVGGHLTALRRLSVGPFTLSDAITLDDLATA 228
>gi|326771728|ref|ZP_08231013.1| tRNA pseudouridine synthase B [Actinomyces viscosus C505]
gi|326637861|gb|EGE38762.1| tRNA pseudouridine synthase B [Actinomyces viscosus C505]
Length = 357
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 89/230 (38%), Positives = 130/230 (56%), Gaps = 17/230 (7%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++V+KP+G TS V G RRL +KVGHAGTLDPMATGLL++ +G+AT+ + G
Sbjct: 27 LLVVDKPQGLTSHDVVGATRRLAATRKVGHAGTLDPMATGLLLLGIGRATRFLTYLVGAD 86
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPW--EHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
K Y RLG T+T DAD +I E + + +++ + G I QVP SAIK
Sbjct: 87 KTYEATVRLGVETTTEDADGQIIAARGCRIEDLPEGRLQEVLTALTGPIQQVPSAVSAIK 146
Query: 429 VGGEKMYDKARRGESIELSPRRISIFQFD---------IERSLED------RQNLIFRVT 473
V G + Y + R G+ +EL R ++I + +E +L D ++ V+
Sbjct: 147 VDGVRAYQRVRDGQDVELQARPVTIHELRLTAEPRKTVVEAALSDGPDAAEAVDIDILVS 206
Query: 474 CSKGTYIRSLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
CS GTY+R+L D G+ALG AHLTALRR ++G + D+A +L +
Sbjct: 207 CSSGTYVRALSRDLGRALGCGAHLTALRRTAVGPFDIDEAHTLADLSAQV 256
>gi|296132891|ref|YP_003640138.1| tRNA pseudouridine synthase B [Thermincola potens JR]
gi|296031469|gb|ADG82237.1| tRNA pseudouridine synthase B [Thermincola potens JR]
Length = 310
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 86/214 (40%), Positives = 125/214 (58%), Gaps = 3/214 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ V KP G TS V LR+ + +KVGH GTLDP G+L VC+GKAT++ +
Sbjct: 4 IINVLKPPGMTSHDVVSFLRKTFQTRKVGHTGTLDPGVPGVLAVCIGKATRVAEFLTEGT 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y G+ + G T+T D + + + ++K DI F G I QVPPM SA+K+G
Sbjct: 64 KSYRGIIKFGVTTTTQDGFGEITEVKDASYLKQSDIADCFKKFIGVIEQVPPMVSAVKIG 123
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSL---EDRQNLIFRVTCSKGTYIRSLCADF 487
G K+Y+ AR+G+ I PR + I I+R ++F VTCSKGTY+R+LC D
Sbjct: 124 GRKLYELARQGKEIVRPPRTVVIHSLIIKRFTNLGSAHPEVMFDVTCSKGTYVRTLCHDI 183
Query: 488 GKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
G+ALG A+++ L R S G + DA+ +E++E
Sbjct: 184 GQALGCGAYMSYLIRTSSGPFKLMDAYTLEEIDE 217
>gi|381165475|ref|ZP_09874705.1| tRNA pseudouridine 55 synthase [Saccharomonospora azurea NA-128]
gi|379257380|gb|EHY91306.1| tRNA pseudouridine 55 synthase [Saccharomonospora azurea NA-128]
Length = 308
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 93/240 (38%), Positives = 135/240 (56%), Gaps = 12/240 (5%)
Query: 286 VGSGEPYIVSRSTELPPTWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLD 345
VG G Y S + PP +++V+KP G TS V K RR ++ +K+GHAGTLD
Sbjct: 2 VGDGG-YSACVSPQAPPPG------LLIVDKPAGMTSHDVVAKARRFLRTRKIGHAGTLD 54
Query: 346 PMATGLLIVCVGKATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQR---EPWEHIK 402
PMATG+L++ V +ATKL+ + K Y LG AT+T DA+ V+ R +
Sbjct: 55 PMATGVLVLGVERATKLLGQLALDRKTYLATISLGVATTTDDAEGEVVARADESALAEVA 114
Query: 403 DEDIRKAAASFRGEIWQVPPMFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDI--ER 460
D I A+ G+I Q P SA+KV G++ Y + R GE ++L R +++++FD+ +R
Sbjct: 115 DSAITAEIAALTGDILQKPSAVSAVKVDGKRAYARVRAGEEVDLPARPVTVYRFDVLAQR 174
Query: 461 SLEDRQNLIFRVTCSKGTYIRSLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELE 520
R L V CS GTY+R+L D G ALG HL ALRR S+G ++ A +++E
Sbjct: 175 RETGRLELDVMVDCSSGTYVRALARDLGAALGVGGHLAALRRTSVGPFTLAKARSLEDVE 234
>gi|322385420|ref|ZP_08059065.1| tRNA pseudouridine synthase B [Streptococcus cristatus ATCC 51100]
gi|417921245|ref|ZP_12564738.1| tRNA pseudouridine synthase B [Streptococcus cristatus ATCC 51100]
gi|321270679|gb|EFX53594.1| tRNA pseudouridine synthase B [Streptococcus cristatus ATCC 51100]
gi|342834579|gb|EGU68845.1| tRNA pseudouridine synthase B [Streptococcus cristatus ATCC 51100]
Length = 292
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 90/222 (40%), Positives = 131/222 (59%), Gaps = 4/222 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ + K G TS KLR+++ KK+GH GTLDP G+L + +GKAT+LV+ Q
Sbjct: 4 IINLRKEAGMTSHDAVFKLRKILGTKKIGHGGTLDPDVVGVLPIAIGKATRLVEFMQEEG 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDED-IRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA +++R P + +E I +A S GEI Q+PPM+SA+KV
Sbjct: 64 KVYEGEITLGCSTTTEDASGDILERTPVTELLEEALIDEAMESMTGEIRQIPPMYSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIER--SLEDRQ-NLIFRVTCSKGTYIRSLCAD 486
G K+Y+ AR G+ +E R+++I+ F+ S ED Q FRV CSKGTY+R+L D
Sbjct: 124 NGRKLYEYARAGQEVERPERQVTIYSFERTSPISYEDEQARFRFRVKCSKGTYVRTLSVD 183
Query: 487 FGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAITKNYF 528
G LG +H++ L R S S +DA E+ E ++ F
Sbjct: 184 LGAKLGFASHMSQLTRTSSAGMSLNDALTLDEIAERVSVEDF 225
>gi|227529111|ref|ZP_03959160.1| pseudouridylate synthase [Lactobacillus vaginalis ATCC 49540]
gi|227350955|gb|EEJ41246.1| pseudouridylate synthase [Lactobacillus vaginalis ATCC 49540]
Length = 299
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 85/218 (38%), Positives = 134/218 (61%), Gaps = 5/218 (2%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ + K +G TSF +LRR++K KK+GH+GTLDP G+L +C+G ATK+V+
Sbjct: 4 IIPLYKERGMTSFDCVSRLRRILKTKKIGHSGTLDPSVDGVLPICIGNATKVVEYLMQSG 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G +G+AT+T D D +++ +P E I E I++A GEI Q+PPM+SA+KV
Sbjct: 64 KEYQGELVIGKATTTEDFDGEIVETKPVETPISSELIKEAMQKMTGEIIQIPPMYSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIERSLED----RQNLIFRVTCSKGTYIRSLCA 485
G+++Y+ AR GE++E R+ I F + R+ D Q++ F+V CSKGTYIR+L A
Sbjct: 124 NGKRLYEYARTGETVERPRRKALISSFALCRNEYDSEHQEQHVYFKVKCSKGTYIRTLVA 183
Query: 486 DFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
D ++LG + L R G ++ D ++++A+
Sbjct: 184 DLARSLGYPGAMKWLTRLESGGFTLDQTLSLNDIQDAV 221
>gi|226953789|ref|ZP_03824253.1| tRNA pseudouridine 55 synthase [Acinetobacter sp. ATCC 27244]
gi|226835460|gb|EEH67843.1| tRNA pseudouridine 55 synthase [Acinetobacter sp. ATCC 27244]
Length = 297
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 86/210 (40%), Positives = 121/210 (57%), Gaps = 2/210 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+ L+NKP G +S K+RRL +K GH G LDP+ATGLL +C+G+ATK
Sbjct: 12 VFLLNKPIGMSSNGALQKVRRLFNAQKAGHTGALDPLATGLLPICLGEATKFSHYLLDST 71
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y +LG+ T+T D + ++Q+ + E I + A FRG+I QVPPM+SA+K
Sbjct: 72 KRYQTTVKLGQTTTTGDIEGDILQKRNVPLLTRESIEQVLAQFRGDIQQVPPMYSALKRE 131
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKA 490
G +Y+ AR+G IE + R ++I+ + ED +L VTCSKGTYIR L D G+A
Sbjct: 132 GRPLYELARQGIEIERAARPVTIYDLTLLSFTED--SLTLDVTCSKGTYIRVLGEDIGEA 189
Query: 491 LGSCAHLTALRRDSIGQYSADDAWEFKELE 520
LG HLT L R G + + + + LE
Sbjct: 190 LGCGGHLTYLHRTQTGHFEINPDYTIEYLE 219
>gi|125717774|ref|YP_001034907.1| tRNA pseudouridine synthase B [Streptococcus sanguinis SK36]
gi|189036601|sp|A3CMF2.1|TRUB_STRSV RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|125497691|gb|ABN44357.1| tRNA pseudouridine synthase B, putative [Streptococcus sanguinis
SK36]
Length = 292
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 92/222 (41%), Positives = 129/222 (58%), Gaps = 4/222 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ + K G TS KLR+++K KK+GH GTLDP G+L + VGKAT+LV+ Q
Sbjct: 4 IINLRKEAGMTSHDAVFKLRKILKTKKIGHGGTLDPDVVGVLPIAVGKATRLVEFMQEEG 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDED-IRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA ++ R P + +E I +A S GEI Q+PPM+SA+KV
Sbjct: 64 KVYEGEITLGCSTTTEDASGDILDRTPVTELLEEALIDEAMESMTGEIRQIPPMYSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIER--SLEDRQ-NLIFRVTCSKGTYIRSLCAD 486
G K+Y+ AR G+ +E R+++I+ F S ED Q FRV CSKGTY+R+L D
Sbjct: 124 NGRKLYEYARAGQEVERPERQVTIYSFKRTSPISYEDEQARFRFRVKCSKGTYVRTLSVD 183
Query: 487 FGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAITKNYF 528
G LG +H++ L R S DDA E+ E + + F
Sbjct: 184 LGAKLGFASHMSQLTRTFSAGMSLDDALTLDEIAERVAVDDF 225
>gi|456388492|gb|EMF53932.1| truB protein [Streptomyces bottropensis ATCC 25435]
Length = 304
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 88/221 (39%), Positives = 124/221 (56%), Gaps = 7/221 (3%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G+TS V K+R + + ++VGHAGTLDPMATG+L++ V +ATKL+
Sbjct: 14 LVIVDKPSGFTSHDVVAKMRGIARTRRVGHAGTLDPMATGVLVLGVERATKLLGHLALTE 73
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y G RLG+ T T DA+ + + E + A G I QVP SAIK+
Sbjct: 74 KEYLGTVRLGQTTVTDDAEGEITASVDASKVTREAVDAGVAELTGRIMQVPSKVSAIKID 133
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDI----ERSLEDRQ---NLIFRVTCSKGTYIRSL 483
G + Y +AR GE E+ R +++ F + + ED +L+ V CS GTYIR+L
Sbjct: 134 GVRSYKRARDGEDFEIPARPVTVSSFAVYDVRDAVAEDGTPVLDLVVSVVCSSGTYIRAL 193
Query: 484 CADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAIT 524
D G LG HLTALRR +G Y D A +L++ +T
Sbjct: 194 ARDLGAGLGVGGHLTALRRTRVGPYKLDSARTLDQLQQELT 234
>gi|320159632|ref|YP_004172856.1| tRNA pseudouridine synthase B [Anaerolinea thermophila UNI-1]
gi|319993485|dbj|BAJ62256.1| tRNA pseudouridine synthase B [Anaerolinea thermophila UNI-1]
Length = 307
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 87/215 (40%), Positives = 127/215 (59%), Gaps = 6/215 (2%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++V+KP G TS V +R+ +++ GH GTLDP A+G+L+V +G A +L +
Sbjct: 15 VLVVDKPVGMTSHDVVQIIRKGTNIRRAGHTGTLDPRASGVLVVLIGPAVRLSEYVSASD 74
Query: 371 KGYSGVFRLGEATSTWDADSPVIQRE--PWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
K Y + RLG +T T+DAD + P E I +E +A F GEI QVPP +SAIK
Sbjct: 75 KRYQAIIRLGTSTDTYDADGRITGSGSVPVESITEEQFEQALQQFVGEIEQVPPPYSAIK 134
Query: 429 VGGEKMYDKARRGESIELSPRRISIFQFDIERSLE-DRQNLIFRVTCSKGTYIRSLCADF 487
V G K Y+ AR GE ++L+PR+I ++ ++ LE + + CS GTY+RSL D
Sbjct: 135 VQGRKAYEMAREGEEVDLAPRKIKVYSLEL---LEWAPPEAVVDIYCSSGTYVRSLAHDL 191
Query: 488 GKALGSCAHLTALRRDSIGQYSADDAWEFKELEEA 522
G+ LG AHL LRR G+++ DA ++L EA
Sbjct: 192 GQVLGCGAHLVGLRRTKSGRFTLRDAVPLRKLREA 226
>gi|386758390|ref|YP_006231606.1| tRNA pseudouridine synthase B [Bacillus sp. JS]
gi|384931672|gb|AFI28350.1| tRNA pseudouridine synthase B [Bacillus sp. JS]
Length = 309
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 90/219 (41%), Positives = 130/219 (59%), Gaps = 8/219 (3%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L++KP G TS K+R+L+K KKVGH GTLDP +G+L +CVG+ATK+V+
Sbjct: 5 VLLLHKPVGMTSHDCVMKIRKLLKTKKVGHTGTLDPEVSGVLPICVGRATKIVEYLTEKS 64
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y LG +T+T D ++ +P H I D K S +G+ Q+PPM+SA+KV
Sbjct: 65 KTYDAEITLGFSTTTEDQTGETVETKPVNHDIDKADAEKVLNSLKGKQEQIPPMYSAVKV 124
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQN-----LIFRVTCSKGTYIRSLC 484
G+K+Y+ AR G +E R I+I DI + E + N F VTCSKGTY+R+L
Sbjct: 125 NGKKLYEYARAGIEVERPKRMITI--EDIALTTEIKHNGETASFRFTVTCSKGTYVRTLA 182
Query: 485 ADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
G+ LG AH++ L R + G +S D+ + F ELE +
Sbjct: 183 VMIGEKLGYPAHMSHLIRKASGDFSLDECFTFDELEAQV 221
>gi|387825112|ref|YP_005824583.1| tRNA pseudouridine synthase B [Francisella cf. novicida 3523]
gi|332184578|gb|AEE26832.1| tRNA pseudouridine synthase B [Francisella cf. novicida 3523]
Length = 302
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 86/212 (40%), Positives = 124/212 (58%), Gaps = 3/212 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V++NK KG +S V +L+ L +K GH GTLDPMATG+L +C G+ATK+
Sbjct: 11 VVVINKTKGVSSNKVLQQLKYLFNAQKAGHTGTLDPMATGVLPICFGRATKIAQYLLDAD 70
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREP-WEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y RLG T + DA+ +I + + E + A+FRG I Q+PPM+SA+K
Sbjct: 71 KEYIATIRLGIETDSGDAEGEIIAKSTNIPELSAEYLETVLANFRGNISQIPPMYSALKY 130
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGK 489
G+ +Y AR G+S+E+ PR I I++ + D+ L RV CSKGTYIRSL + GK
Sbjct: 131 NGQPLYKIAREGKSVEIKPRNIKIYELKLLDF--DKDTLKVRVKCSKGTYIRSLAIEIGK 188
Query: 490 ALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
L HL AL+R G + A+E ++L++
Sbjct: 189 KLNCGGHLIALQRTQSGPFKLAQAFELEQLKD 220
>gi|430758910|ref|YP_007209631.1| tRNA pseudouridine synthase B [Bacillus subtilis subsp. subtilis
str. BSP1]
gi|449094357|ref|YP_007426848.1| tRNA pseudouridine 55 synthase [Bacillus subtilis XF-1]
gi|430023430|gb|AGA24036.1| tRNA pseudouridine synthase B [Bacillus subtilis subsp. subtilis
str. BSP1]
gi|449028272|gb|AGE63511.1| tRNA pseudouridine 55 synthase [Bacillus subtilis XF-1]
Length = 309
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 86/214 (40%), Positives = 129/214 (60%), Gaps = 4/214 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L++KP G TS K+R+L+K KKVGH GTLDP +G+L +CVG+ATK+V+
Sbjct: 5 VLLLHKPVGMTSHDCVMKIRKLLKTKKVGHTGTLDPEVSGVLPICVGRATKIVEYLTEKS 64
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y LG +T+T D ++ +P H I D+ K S +G+ Q+PPM+SA+KV
Sbjct: 65 KTYDAEITLGFSTTTEDQTGETVETKPVNHDIDKADVEKVLNSLKGKQEQIPPMYSAVKV 124
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIERSLE---DRQNLIFRVTCSKGTYIRSLCAD 486
G+K+Y+ AR G +E R I+I + ++ + + F VTCSKGTY+R+L
Sbjct: 125 NGKKLYEYARAGIEVERPKRMITIEDIALTTEIKHHGETASFRFTVTCSKGTYVRTLAVM 184
Query: 487 FGKALGSCAHLTALRRDSIGQYSADDAWEFKELE 520
G+ LG AH++ L R + G +S D+ + F ELE
Sbjct: 185 IGEKLGYPAHMSHLIRTASGDFSLDECFTFDELE 218
>gi|325854959|ref|ZP_08171675.1| tRNA pseudouridine synthase B [Prevotella denticola CRIS 18C-A]
gi|325483937|gb|EGC86877.1| tRNA pseudouridine synthase B [Prevotella denticola CRIS 18C-A]
Length = 233
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 82/217 (37%), Positives = 125/217 (57%), Gaps = 5/217 (2%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVK-----KVGHAGTLDPMATGLLIVCVGKATKLV 363
G ++ ++KP G TSF +R L K+GHAGTLDP+ATG+LI+ GK TK +
Sbjct: 6 GVVIPIDKPYGITSFKALAHIRYLCTQANDGKVKIGHAGTLDPLATGVLILATGKMTKQI 65
Query: 364 DRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPM 423
+ Q K Y+ F+LG T ++D + V P EHI E I + F G+I Q+PP
Sbjct: 66 ETLQAHTKEYTATFQLGATTPSYDMEHEVNGTFPTEHITRELIDETLPRFVGDIEQIPPT 125
Query: 424 FSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSL 483
+SA+KV G++ ++ R GE + L P+ I I + ++ + + R+ C KGTYIR+L
Sbjct: 126 YSAVKVDGKRAFNYRRNGEEVTLKPKHIHIDEIEVLDFDTAKMQIRLRIVCGKGTYIRAL 185
Query: 484 CADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELE 520
DFG+A+ S A+LTALRR +G ++ + + +
Sbjct: 186 ARDFGRAVNSGAYLTALRRTRVGNVRVENCISYDQFD 222
>gi|219850410|ref|YP_002464843.1| tRNA pseudouridine synthase B [Chloroflexus aggregans DSM 9485]
gi|219544669|gb|ACL26407.1| tRNA pseudouridine synthase B [Chloroflexus aggregans DSM 9485]
Length = 293
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 92/212 (43%), Positives = 124/212 (58%), Gaps = 5/212 (2%)
Query: 312 VLVNKPKGWTSFTVCGKLRRLV-KVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
V+++KP G TS V +RRLV +V KVGHAGTLDPMATG+L V +G AT+L+D+
Sbjct: 9 VIIDKPAGLTSHDVVAHVRRLVGRVVKVGHAGTLDPMATGVLPVALGSATRLLDQLVDTR 68
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
KGY GV RLG T+T DAD + + + E I FRG+I Q PP FSA+ +
Sbjct: 69 KGYLGVVRLGIQTTTDDADGEPLVTQAVPELTPETIETVLTRFRGDILQQPPAFSALHID 128
Query: 431 GEKMYDKARRGESIELSPRRISIFQFD-IERSLEDRQNLIFRVTCSKGTYIRSLCADFGK 489
G++ Y AR G + L+P+ + I + D + +L D L V CSKGTYIR+L D G
Sbjct: 129 GQRAYALARAGNEVTLAPKPVRIERLDLLAVALPD---LTIAVECSKGTYIRALARDIGA 185
Query: 490 ALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
ALG HL +L+R G + + A L +
Sbjct: 186 ALGCGGHLASLQRIFTGPFRLEHAIPLAALTD 217
>gi|154707141|ref|YP_001423975.1| tRNA pseudouridine synthase B [Coxiella burnetii Dugway 5J108-111]
gi|189036468|sp|A9KBM3.1|TRUB_COXBN RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|154356427|gb|ABS77889.1| tRNA pseudouridine synthase B [Coxiella burnetii Dugway 5J108-111]
Length = 309
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 87/225 (38%), Positives = 132/225 (58%), Gaps = 4/225 (1%)
Query: 297 STELPPTWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCV 356
+T P + P ++L++KP G TS +++RL KK GH G+LDP+ATGLL +C+
Sbjct: 3 ATNHPKLFKRPVDGVLLLDKPGGMTSNEALQRVKRLFHAKKAGHTGSLDPLATGLLPICL 62
Query: 357 GKATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGE 416
G+ATK G K YS RLG T++ D++SP++ P + + K ++FRG
Sbjct: 63 GEATKFSQFLLGADKSYSVKGRLGVRTASGDSESPILTERPIPKLTKRALEKTLSAFRGV 122
Query: 417 IWQVPPMFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLE-DRQNLIFRVTCS 475
I Q P M+SA+K G+ +Y AR+G +E R+++I++ + L+ D +++ V CS
Sbjct: 123 IDQTPSMYSALKHKGQPLYKLARQGIEVERKTRQVTIYELTL---LDWDNESIELYVHCS 179
Query: 476 KGTYIRSLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELE 520
KGTYIR+L D G+ALG AH+ ALRR + Y D + LE
Sbjct: 180 KGTYIRTLLDDVGEALGCGAHVVALRRLRVAHYHEDQMIKLAHLE 224
>gi|118498034|ref|YP_899084.1| tRNA pseudouridine synthase B [Francisella novicida U112]
gi|194323259|ref|ZP_03057043.1| tRNA pseudouridine synthase B, putative [Francisella novicida FTE]
gi|208779556|ref|ZP_03246901.1| tRNA pseudouridine synthase B, putative [Francisella novicida FTG]
gi|189036481|sp|A0Q7W5.1|TRUB_FRATN RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|118423940|gb|ABK90330.1| tRNA pseudouridine synthase B [Francisella novicida U112]
gi|194322623|gb|EDX20103.1| tRNA pseudouridine synthase B, putative [Francisella tularensis
subsp. novicida FTE]
gi|208744517|gb|EDZ90816.1| tRNA pseudouridine synthase B, putative [Francisella novicida FTG]
Length = 302
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 86/213 (40%), Positives = 127/213 (59%), Gaps = 5/213 (2%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V++NK K +S V +L+ L +K GH GTLDPMATG+L +C G+ATK+
Sbjct: 11 VVVINKAKDVSSNKVLQQLKYLFNAQKAGHTGTLDPMATGVLPICFGRATKIAQYLLDAD 70
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREP-WEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y RLG T + DA+ +I + P + E + A FRG++ Q+PPM+SA+K
Sbjct: 71 KEYIATIRLGIETDSGDAEGEIIAKSPNIPELSAEYLETVLAKFRGDVVQIPPMYSALKY 130
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIERSLE-DRQNLIFRVTCSKGTYIRSLCADFG 488
G+ +Y AR G+++E+ R I I++ ++ LE D +L RV CSKGTYIRSL D G
Sbjct: 131 NGQPLYKLAREGKTVEVKSRNIKIYELEL---LEFDIDSLKIRVKCSKGTYIRSLAIDIG 187
Query: 489 KALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
K LG HL AL+R G + +A+ ++L++
Sbjct: 188 KTLGCGGHLIALQRTQSGPFKLSEAFRLEQLKD 220
>gi|331266225|ref|YP_004325855.1| tRNA pseudouridine synthase B [Streptococcus oralis Uo5]
gi|326682897|emb|CBZ00514.1| tRNA pseudouridine synthase B [Streptococcus oralis Uo5]
Length = 292
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 88/217 (40%), Positives = 126/217 (58%), Gaps = 4/217 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ + K G TS KLR+++ KK+GH GTLDP G+L + VGKAT++V+ Q
Sbjct: 4 IINLKKEAGMTSHDAVFKLRKILGTKKIGHGGTLDPDVVGVLPIAVGKATRMVEFMQDEG 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDE-DIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V+ P DE + +A AS G I Q+PPM+SA+KV
Sbjct: 64 KVYEGEITLGYSTTTEDASGEVVAETPVLSSLDETTVDEAIASLTGPITQIPPMYSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNL---IFRVTCSKGTYIRSLCAD 486
G K+Y+ AR G+ +E R+++I+QF+ + +L FRV CSKGTYIR+L D
Sbjct: 124 NGRKLYEYARAGQEVERPERQVTIYQFERTSPISYENHLARFTFRVKCSKGTYIRTLSVD 183
Query: 487 FGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
G+ LG AH++ L R S +DA E+ E +
Sbjct: 184 LGEKLGYAAHMSHLTRTSAAGLQLEDALTLDEIAEKV 220
>gi|298368697|ref|ZP_06980015.1| tRNA pseudouridine synthase B [Neisseria sp. oral taxon 014 str.
F0314]
gi|298282700|gb|EFI24187.1| tRNA pseudouridine synthase B [Neisseria sp. oral taxon 014 str.
F0314]
Length = 308
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 89/213 (41%), Positives = 123/213 (57%), Gaps = 3/213 (1%)
Query: 307 PFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRY 366
P ++L++KP+G +S T K RRL +K GH G LDP+ATGLL VC G+ATK
Sbjct: 9 PVNGVLLLDKPEGLSSNTALQKARRLYNAEKAGHTGVLDPLATGLLPVCFGEATKFAQYL 68
Query: 367 QGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSA 426
K Y+ +LGEA+ST DA+ +I + I + + A + G I QVPPMFSA
Sbjct: 69 LDADKAYTATLKLGEASSTGDAEGEIIATARAD-ISLAEFQTACQALTGNIRQVPPMFSA 127
Query: 427 IKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCAD 486
+K G+ +Y+ AR+G IE PR I+I+ DI D + V CSKGTYIR+L D
Sbjct: 128 LKHEGKPLYEYARKGIVIERKPRDITIYAIDITEF--DAPKAVIDVRCSKGTYIRTLSED 185
Query: 487 FGKALGSCAHLTALRRDSIGQYSADDAWEFKEL 519
K +G+ AHLTALRR ++ ++ + L
Sbjct: 186 IAKHIGTFAHLTALRRTETAGFTIRESHTLETL 218
>gi|28210964|ref|NP_781908.1| tRNA pseudouridine synthase B [Clostridium tetani E88]
gi|37088403|sp|Q895J5.1|TRUB_CLOTE RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|28203403|gb|AAO35845.1| tRNA pseudouridine synthase B [Clostridium tetani E88]
Length = 289
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 85/211 (40%), Positives = 133/211 (63%), Gaps = 2/211 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ V KP+ TSF V ++++ ++KKVGH GTLDPMATG+L +C+G +TK+VD
Sbjct: 4 VINVYKPQNITSFDVVRIIKKISRIKKVGHTGTLDPMATGVLPICLGGSTKIVDFIMNEH 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y +LG T T+D + V++ E I +E++ SF+GEI Q+PPM+SAIK+
Sbjct: 64 KEYRAKLKLGLITDTYDREGKVLKEEDASKILEEEVVNCINSFKGEIIQIPPMYSAIKIK 123
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKA 490
GE++Y+ AR+G +E R+I+I+ ++ + + + F+V CSKGTYIRSLC D G
Sbjct: 124 GERLYNLARKGIEVEREGRKINIYNIEVLKV--NLPYVEFKVNCSKGTYIRSLCYDIGNK 181
Query: 491 LGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
LG A + L R G +S +++ +++ E
Sbjct: 182 LGMGATMWELERTKTGNFSIENSINLEDINE 212
>gi|321315433|ref|YP_004207720.1| tRNA pseudouridine synthase B [Bacillus subtilis BSn5]
gi|320021707|gb|ADV96693.1| tRNA pseudouridine synthase B [Bacillus subtilis BSn5]
Length = 309
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 86/214 (40%), Positives = 129/214 (60%), Gaps = 4/214 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L++KP G TS K+R+L+K KKVGH GTLDP +G+L +CVG+ATK+V+
Sbjct: 5 VLLLHKPVGMTSHDCVMKIRKLLKTKKVGHTGTLDPEVSGVLPICVGRATKIVEYLTEKS 64
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y LG +T+T D ++ +P H I D+ K S +G+ Q+PPM+SA+KV
Sbjct: 65 KTYDAEITLGFSTTTEDQTGETVEAKPVNHDIDKADVEKVLNSLKGKQEQIPPMYSAVKV 124
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIERSLE---DRQNLIFRVTCSKGTYIRSLCAD 486
G+K+Y+ AR G +E R I+I + ++ + + F VTCSKGTY+R+L
Sbjct: 125 NGKKLYEYARAGIEVERPKRMITIEDIALTTEIKHHGETASFRFTVTCSKGTYVRTLAVM 184
Query: 487 FGKALGSCAHLTALRRDSIGQYSADDAWEFKELE 520
G+ LG AH++ L R + G +S D+ + F ELE
Sbjct: 185 IGEKLGYPAHMSHLIRTASGDFSLDECFTFDELE 218
>gi|125973503|ref|YP_001037413.1| tRNA pseudouridine synthase B [Clostridium thermocellum ATCC 27405]
gi|256003321|ref|ZP_05428312.1| tRNA pseudouridine synthase B [Clostridium thermocellum DSM 2360]
gi|281417706|ref|ZP_06248726.1| tRNA pseudouridine synthase B [Clostridium thermocellum JW20]
gi|385778578|ref|YP_005687743.1| tRNA pseudouridine synthase B [Clostridium thermocellum DSM 1313]
gi|419723594|ref|ZP_14250709.1| tRNA pseudouridine synthase B [Clostridium thermocellum AD2]
gi|419724581|ref|ZP_14251643.1| tRNA pseudouridine synthase B [Clostridium thermocellum YS]
gi|125713728|gb|ABN52220.1| tRNA pseudouridine synthase B [Clostridium thermocellum ATCC 27405]
gi|255992611|gb|EEU02702.1| tRNA pseudouridine synthase B [Clostridium thermocellum DSM 2360]
gi|281409108|gb|EFB39366.1| tRNA pseudouridine synthase B [Clostridium thermocellum JW20]
gi|316940258|gb|ADU74292.1| tRNA pseudouridine synthase B [Clostridium thermocellum DSM 1313]
gi|380772128|gb|EIC05986.1| tRNA pseudouridine synthase B [Clostridium thermocellum YS]
gi|380780276|gb|EIC09959.1| tRNA pseudouridine synthase B [Clostridium thermocellum AD2]
Length = 297
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 93/214 (43%), Positives = 125/214 (58%), Gaps = 5/214 (2%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
V KP G TSF V LR ++K+KK+GH GTLDP A G+L VC GKATK ++ K Y
Sbjct: 7 VLKPPGMTSFDVVAYLRGILKIKKIGHTGTLDPGAAGVLPVCTGKATKAIEYLSDKDKVY 66
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEK 433
LG +T T D+ VI RE EDI K SF G+ Q+PPM+SA+K+ G+K
Sbjct: 67 RAELLLGVSTDTQDSYGEVI-REQEVKASVEDIEKVIKSFEGDYSQLPPMYSAVKMNGKK 125
Query: 434 MYDKARRGESIELSPRRISIFQFDIERSLEDRQN-LIFRVTCSKGTYIRSLCADFGKALG 492
+Y+ AR G +E +PR++ I +I L R N ++F V CSKGTYIR+LC+D G LG
Sbjct: 126 LYELARSGIEVERTPRKVKIHFINI---LSIRGNRVVFDVGCSKGTYIRTLCSDVGDKLG 182
Query: 493 SCAHLTALRRDSIGQYSADDAWEFKELEEAITKN 526
H+ L R G + +A +E++E K
Sbjct: 183 CGGHMGFLVRLKSGSFDIKNALTLEEIKETAEKG 216
>gi|429738597|ref|ZP_19272396.1| tRNA pseudouridine synthase B [Prevotella saccharolytica F0055]
gi|429159591|gb|EKY02089.1| tRNA pseudouridine synthase B [Prevotella saccharolytica F0055]
Length = 234
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 84/219 (38%), Positives = 125/219 (57%), Gaps = 6/219 (2%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVK------KVGHAGTLDPMATGLLIVCVGKATKL 362
G ++ ++KP TSF ++R L+ K K+GHAGTLDP+ATG+L++C GKATK
Sbjct: 6 GEIICIDKPYEMTSFGALARVRYLISKKLGVKRVKIGHAGTLDPLATGVLVLCTGKATKR 65
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
+ Q K Y +LG T ++D + PV + P HI + I + F G I QVPP
Sbjct: 66 ISELQLHTKEYVADLQLGATTVSYDMEHPVNETFPTTHITHKLIEETLKQFIGVIQQVPP 125
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRS 482
+SA K+ G++ YD R+G+ +ELSP+ + I ++ ++ L RV C KGTYIR+
Sbjct: 126 SYSACKINGDRAYDLKRKGKEVELSPKVLQIDGIELLMFDAEKMQLTIRVVCGKGTYIRA 185
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
L D G+A+ S A+LT LRR +G ++ +E
Sbjct: 186 LARDIGRAMNSGAYLTNLRRTRVGDICVENCIGLDTFQE 224
>gi|302528530|ref|ZP_07280872.1| tRNA pseudouridine synthase B [Streptomyces sp. AA4]
gi|302437425|gb|EFL09241.1| tRNA pseudouridine synthase B [Streptomyces sp. AA4]
Length = 305
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 88/226 (38%), Positives = 128/226 (56%), Gaps = 6/226 (2%)
Query: 302 PTWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATK 361
P P +++V+KP G TS V + RR++ +KVGHAGTLDPMATG+L++ + +ATK
Sbjct: 7 PRRPAPPPGLLIVDKPAGMTSHDVVARARRIMGTRKVGHAGTLDPMATGVLVLGIERATK 66
Query: 362 LVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQR----EPWEHIKDEDIRKAAASFRGEI 417
L+ K Y LG +T+T DA+ ++ E + DE I A G+I
Sbjct: 67 LLGHLALDRKTYLATLSLGRSTTTDDAEGEPLENDAAPETLAAVTDEQIADGVAQLTGDI 126
Query: 418 WQVPPMFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDI--ERSLEDRQNLIFRVTCS 475
QVP SA+K+ G++ Y + R GE + L PR +++ +FD+ R +DR L V CS
Sbjct: 127 QQVPSAVSAVKIDGKRAYARVRAGEDVVLPPRPVTVHRFDVLGLRREDDRIELDAVVECS 186
Query: 476 KGTYIRSLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
GTY+R+L D G LG HL ALRR ++G ++ A +LEE
Sbjct: 187 SGTYVRALARDLGAGLGVGGHLKALRRTTVGPFTLARARTLDQLEE 232
>gi|226949768|ref|YP_002804859.1| tRNA pseudouridine synthase B [Clostridium botulinum A2 str. Kyoto]
gi|226841174|gb|ACO83840.1| tRNA pseudouridine synthase B [Clostridium botulinum A2 str. Kyoto]
Length = 289
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 91/215 (42%), Positives = 129/215 (60%), Gaps = 3/215 (1%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
V KPKG TSF V +R++ K+KKVGH GTLDP+A+G+L VC+GKATK+VD K Y
Sbjct: 7 VLKPKGITSFDVVRHIRKIAKIKKVGHTGTLDPLASGVLPVCIGKATKIVDYIMEGTKTY 66
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEK 433
+LG T T+D + V++ + + E + + + G+I QVPPM+SA+K+ G+K
Sbjct: 67 RVEMKLGTTTDTYDREGTVLEEKEIDLTPIE-VEETIKKYIGDIDQVPPMYSALKINGQK 125
Query: 434 MYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKALGS 493
+Y AR+G +E R+I I+ I D +IF V CSKGTYIRSLC D GK L S
Sbjct: 126 LYYLARKGIEVEREARKIHIYDICILSI--DLPYVIFDVKCSKGTYIRSLCFDIGKDLDS 183
Query: 494 CAHLTALRRDSIGQYSADDAWEFKELEEAITKNYF 528
A + L+R ++ +A + ++L E K Y
Sbjct: 184 GAVMWNLQRLEASPFNIKEAIKLEDLNEENIKQYI 218
>gi|300854504|ref|YP_003779488.1| tRNA pseudouridine synthase B [Clostridium ljungdahlii DSM 13528]
gi|300434619|gb|ADK14386.1| tRNA pseudouridine synthase B [Clostridium ljungdahlii DSM 13528]
Length = 293
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 85/215 (39%), Positives = 131/215 (60%), Gaps = 3/215 (1%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
+NKP G TSF V K+R + KKVGH GTLDP+A+G+L +C+G ATK D K Y
Sbjct: 8 INKPVGMTSFDVVKKIRSISGNKKVGHTGTLDPIASGVLPICIGGATKFADYIMKSHKIY 67
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEK 433
+LG T T+D + ++ + + ++ +R SF+GEI Q+PPM+SAIK+ G+K
Sbjct: 68 LAELKLGVNTDTYDREGTIVGTSEVK-LDEKSVRDTILSFQGEIEQLPPMYSAIKINGKK 126
Query: 434 MYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKALGS 493
+YD AR+G IE + R+I+I+ +I + ++F+V CSKGTYIRSLC D G+ L
Sbjct: 127 LYDLARQGIEIERNKRKINIYSIEIINI--ELPYVVFQVKCSKGTYIRSLCHDIGEKLNC 184
Query: 494 CAHLTALRRDSIGQYSADDAWEFKELEEAITKNYF 528
+ L+R + G ++ ++ ++L++ I Y
Sbjct: 185 GGIMWNLKRMATGNFNISNSILLEDLQKDIISKYI 219
>gi|323701869|ref|ZP_08113539.1| tRNA pseudouridine synthase B [Desulfotomaculum nigrificans DSM
574]
gi|323533173|gb|EGB23042.1| tRNA pseudouridine synthase B [Desulfotomaculum nigrificans DSM
574]
Length = 310
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 88/214 (41%), Positives = 130/214 (60%), Gaps = 3/214 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ V KP G TS V +R++ KK GH GTLDP ATG+L VC+GKAT+L
Sbjct: 4 IINVLKPPGMTSHDVVYFVRKITGAKKCGHTGTLDPGATGVLPVCLGKATRLARFVTEGN 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y LG +T+T DA +++++ I E I SF G+I Q PPM SAIK+
Sbjct: 64 KSYRAEMTLGLSTTTQDAFGDIVEQKDAFQIYPEQIDNLLPSFIGDIKQTPPMASAIKIN 123
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERS---LEDRQNLIFRVTCSKGTYIRSLCADF 487
G+++YD AR+G+SI++ R ++IF + +S ++F VTCSKGTY+R+LCAD
Sbjct: 124 GQRLYDLARQGQSIDVPTRIVTIFDLRVVQSNNWGTAHPRILFDVTCSKGTYVRTLCADI 183
Query: 488 GKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
G+ALG A+++ L R + +S D A+ ++L +
Sbjct: 184 GRALGCGAYMSFLLRTRVAGFSIDHAYTLEDLTD 217
>gi|189485241|ref|YP_001956182.1| tRNA pseudouridine synthase B [uncultured Termite group 1 bacterium
phylotype Rs-D17]
gi|226708678|sp|B1GZN9.1|TRUB_UNCTG RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|170287200|dbj|BAG13721.1| tRNA pseudouridine synthase B [uncultured Termite group 1 bacterium
phylotype Rs-D17]
Length = 230
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 86/212 (40%), Positives = 127/212 (59%), Gaps = 2/212 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L++KP G TSF K+++++ V+K GH GTLDP +TGLL+V +GKATKL ++
Sbjct: 11 LLLLDKPFGITSFDAVYKIKKVLNVEKTGHCGTLDPASTGLLLVLMGKATKLQAKFMKKD 70
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y F LG T + D D VI +I E I+K F GEI+Q+PPM+SA+K
Sbjct: 71 KVYLSSFLLGMVTDSGDLDGKVISENSVLNINIEKIKKMVEMFEGEIFQIPPMYSALKYN 130
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKA 490
G+K+ + AR+G +E PR+++I +F++ D + R+ CS GTYIR+L D G
Sbjct: 131 GKKLCELARQGIEVERKPRKVTIKKFEVLSY--DGDIVKVRIECSSGTYIRTLAQDLGNV 188
Query: 491 LGSCAHLTALRRDSIGQYSADDAWEFKELEEA 522
L A + LRR+ I + DA FK+ + A
Sbjct: 189 LKCGATVKTLRREKIDIFDIKDALRFKDTDSA 220
>gi|357235450|ref|ZP_09122793.1| tRNA pseudouridine synthase B family protein [Streptococcus criceti
HS-6]
gi|356883432|gb|EHI73632.1| tRNA pseudouridine synthase B family protein [Streptococcus criceti
HS-6]
Length = 297
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 86/221 (38%), Positives = 129/221 (58%), Gaps = 5/221 (2%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ + K G TS KLR++++ KK+GH GTLDP TG+L + VGKAT++++
Sbjct: 5 IINLKKEAGMTSHDAVFKLRKILQEKKIGHGGTLDPDVTGVLPIAVGKATRVLEYMTESG 64
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWE--HIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
K Y G LG +T+T DA +++ P + + DE + +A +SF GEI Q+PPM+SA+K
Sbjct: 65 KVYEGQITLGYSTTTEDASGELVRETPIKAGQLTDEQVDQAMSSFLGEITQIPPMYSAVK 124
Query: 429 VGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLI---FRVTCSKGTYIRSLCA 485
V G K+YD AR GE++E R+++I F L + L FRV C KGTY+R+L
Sbjct: 125 VNGRKLYDYARAGETVERPQRQVTIGAFVRTSPLSFKDGLCRFDFRVACGKGTYVRTLAV 184
Query: 486 DFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAITKN 526
D G LG +H++ALRR + + A EL + +
Sbjct: 185 DLGAKLGCASHMSALRRTASAGLQLEQAHNLSELADKVAAG 225
>gi|16078729|ref|NP_389548.1| tRNA pseudouridine synthase B [Bacillus subtilis subsp. subtilis
str. 168]
gi|221309544|ref|ZP_03591391.1| tRNA pseudouridine 55 synthase [Bacillus subtilis subsp. subtilis
str. 168]
gi|221313868|ref|ZP_03595673.1| tRNA pseudouridine 55 synthase [Bacillus subtilis subsp. subtilis
str. NCIB 3610]
gi|221318791|ref|ZP_03600085.1| tRNA pseudouridine 55 synthase [Bacillus subtilis subsp. subtilis
str. JH642]
gi|221323063|ref|ZP_03604357.1| tRNA pseudouridine 55 synthase [Bacillus subtilis subsp. subtilis
str. SMY]
gi|402775912|ref|YP_006629856.1| tRNA pseudouridine 55 synthase [Bacillus subtilis QB928]
gi|452913838|ref|ZP_21962465.1| tRNA pseudouridine(55) synthase [Bacillus subtilis MB73/2]
gi|3183559|sp|P32732.2|TRUB_BACSU RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|2634038|emb|CAB13539.1| tRNA pseudouridine 55 synthase [Bacillus subtilis subsp. subtilis
str. 168]
gi|402483461|gb|AFQ59970.1| TRNA pseudouridine 55 synthase [Bacillus subtilis QB928]
gi|407959073|dbj|BAM52313.1| tRNA pseudouridine synthase B [Synechocystis sp. PCC 6803]
gi|407964650|dbj|BAM57889.1| tRNA pseudouridine synthase B [Bacillus subtilis BEST7003]
gi|452116258|gb|EME06653.1| tRNA pseudouridine(55) synthase [Bacillus subtilis MB73/2]
Length = 309
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 86/214 (40%), Positives = 129/214 (60%), Gaps = 4/214 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L++KP G TS K+R+L+K KKVGH GTLDP +G+L +CVG+ATK+V+
Sbjct: 5 VLLLHKPVGMTSHDCVMKIRKLLKTKKVGHTGTLDPEVSGVLPICVGRATKIVEYLTEKS 64
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y LG +T+T D ++ +P H I D+ K S +G+ Q+PPM+SA+KV
Sbjct: 65 KTYDAEITLGFSTTTEDQTGETVETKPVNHDIDKADVEKVLNSLKGKQEQIPPMYSAVKV 124
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIERSLE---DRQNLIFRVTCSKGTYIRSLCAD 486
G+K+Y+ AR G +E R I+I + ++ + + F VTCSKGTY+R+L
Sbjct: 125 NGKKLYEYARAGIEVERPKRMITIEDIALTTEIKHHGETASFRFTVTCSKGTYVRTLAVM 184
Query: 487 FGKALGSCAHLTALRRDSIGQYSADDAWEFKELE 520
G+ LG AH++ L R + G +S D+ + F ELE
Sbjct: 185 IGEKLGYPAHMSHLIRTASGDFSLDECFTFDELE 218
>gi|452995291|emb|CCQ93058.1| tRNA pseudouridine synthase B [Clostridium ultunense Esp]
Length = 297
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 84/208 (40%), Positives = 130/208 (62%), Gaps = 3/208 (1%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQG 368
GT+ L KP+G TS +R+++ +KK+GH GTLDP ATG+L +C+GK T++ +
Sbjct: 3 GTINLF-KPRGITSHDAVYNMRKILGIKKIGHTGTLDPNATGVLPLCIGKGTRISEYLLD 61
Query: 369 MIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
+ K Y G LG AT T D D +I + + + DI A F GEI QVPPM+SA+K
Sbjct: 62 VDKEYIGELILGMATDTQDIDGEIIDYS-TKKVSEADIHIAFDRFIGEIEQVPPMYSALK 120
Query: 429 VGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFG 488
G+K+Y+ AR+G +E PR++ ++ I ++ D + +IF V CS+GTYIR+LC D G
Sbjct: 121 KDGKKLYELARKGVIVERPPRKVKVYDLKI-YNIIDNKKIIFYVKCSRGTYIRTLCHDIG 179
Query: 489 KALGSCAHLTALRRDSIGQYSADDAWEF 516
+ LG+ +++ L R +G ++ D++ F
Sbjct: 180 ELLGTYGYMSYLIRTGVGAFNIKDSYSF 207
>gi|407795697|ref|ZP_11142655.1| tRNA pseudouridine 55 synthase [Salimicrobium sp. MJ3]
gi|407020038|gb|EKE32752.1| tRNA pseudouridine 55 synthase [Salimicrobium sp. MJ3]
Length = 291
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 89/206 (43%), Positives = 121/206 (58%), Gaps = 3/206 (1%)
Query: 316 KPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSG 375
KPKG TS K+R++ KK+GH GTLDP G+L +C+GKATKLV K Y
Sbjct: 9 KPKGLTSHDCVVKVRKVAGTKKIGHTGTLDPEVEGVLPLCIGKATKLVPFLTDTEKTYEA 68
Query: 376 VFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEKMY 435
V LG AT T DA VI I D I+K F+G+I QVPPM+SA+K+ G ++Y
Sbjct: 69 VISLGTATETEDAWGEVIDTAEVPDISDHYIQKVLKDFQGDITQVPPMYSAVKINGRRLY 128
Query: 436 DKARRGESIELSPRRISIFQFD-IERSLEDRQNLIFRVTCSKGTYIRSLCADFGKALGSC 494
+ AR G +E R+++I + +ER R++ +V CSKGTYIR+LC D GKALG
Sbjct: 129 EYAREGMEVERPERQVTIHELHWMERV--SRESFRVKVVCSKGTYIRTLCVDIGKALGLP 186
Query: 495 AHLTALRRDSIGQYSADDAWEFKELE 520
AH+ L R G ++ D ++L+
Sbjct: 187 AHMKELTRTGTGDFTEIDCVRLEDLD 212
>gi|308173629|ref|YP_003920334.1| tRNA pseudouridine 55 synthase [Bacillus amyloliquefaciens DSM 7]
gi|384159351|ref|YP_005541424.1| tRNA pseudouridine synthase B [Bacillus amyloliquefaciens TA208]
gi|384164215|ref|YP_005545594.1| tRNA pseudouridine 55 synthase [Bacillus amyloliquefaciens LL3]
gi|384168397|ref|YP_005549775.1| tRNA pseudouridine synthase B [Bacillus amyloliquefaciens XH7]
gi|307606493|emb|CBI42864.1| tRNA pseudouridine 55 synthase [Bacillus amyloliquefaciens DSM 7]
gi|328553439|gb|AEB23931.1| tRNA pseudouridine synthase B [Bacillus amyloliquefaciens TA208]
gi|328911770|gb|AEB63366.1| tRNA pseudouridine 55 synthase [Bacillus amyloliquefaciens LL3]
gi|341827676|gb|AEK88927.1| tRNA pseudouridine synthase B [Bacillus amyloliquefaciens XH7]
Length = 309
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 88/215 (40%), Positives = 128/215 (59%), Gaps = 4/215 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L++KP G TS K+R+L+K KKVGH GTLDP +G+L +CVG+ATK+V+
Sbjct: 5 VLLLHKPVGMTSHDCVMKIRKLLKTKKVGHTGTLDPEVSGVLPICVGRATKIVEYVTDKS 64
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPW-EHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y LG +TST D + +P E I + DI+ +G QVPPM+SA+KV
Sbjct: 65 KTYDAEITLGFSTSTEDQTGETVSVKPVKEPINETDIKAVLDELKGPQEQVPPMYSAVKV 124
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIERSL---EDRQNLIFRVTCSKGTYIRSLCAD 486
G+K+Y+ AR G +E R I+I + + +D + F VTCSKGTY+R+L
Sbjct: 125 NGKKLYEYARAGIEVERPKRNITIEDISLTSPVTYTDDTASFRFTVTCSKGTYVRTLAVT 184
Query: 487 FGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
G+ LG AH++ L R + G +S D+ + F ELE+
Sbjct: 185 IGEKLGYPAHMSHLIRTASGDFSLDECFTFDELEQ 219
>gi|350272432|ref|YP_004883740.1| tRNA pseudouridine synthase [Oscillibacter valericigenes Sjm18-20]
gi|348597274|dbj|BAL01235.1| tRNA pseudouridine synthase [Oscillibacter valericigenes Sjm18-20]
Length = 288
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 85/211 (40%), Positives = 125/211 (59%), Gaps = 2/211 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++++KP WTS VC KLR +++ K+VGH+GTLDPMATG+L V VG+AT+ V+ +
Sbjct: 5 IIIIDKPADWTSMDVCAKLRGILREKRVGHSGTLDPMATGVLPVFVGQATRAVEFAESGK 64
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y RLG T T D I+ E + E + F G+I Q+PPM+SAIK+
Sbjct: 65 KEYVAGLRLGLVTDTQDVTGTTIETREAE-VSREMLAAVLPQFTGDIQQLPPMYSAIKIH 123
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKA 490
G K+ D AR+G +E PR I+I++ +I + R CSKGTYIR+LC D G+A
Sbjct: 124 GRKLCDVARKGGEVERKPRGITIYELEI-LGQAGPADFTLRCVCSKGTYIRTLCHDIGRA 182
Query: 491 LGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
LG + +LRR ++ A ++++E
Sbjct: 183 LGCGGCMASLRRTMAAGFTLSQAVSIQDVQE 213
>gi|339326335|ref|YP_004686028.1| tRNA pseudouridine synthase B [Cupriavidus necator N-1]
gi|338166492|gb|AEI77547.1| tRNA pseudouridine synthase B [Cupriavidus necator N-1]
Length = 315
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 90/213 (42%), Positives = 132/213 (61%), Gaps = 4/213 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L++KP G +S + +RL++ K GH GTLDP+ATGLL +C G+ATK
Sbjct: 20 VLLLDKPLGLSSNDALVRAKRLLRAAKAGHTGTLDPLATGLLPLCFGEATKFSQDLLEAD 79
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDE-DIRKAAASFRGEIWQVPPMFSAIKV 429
K Y V RLG +ST DA+ ++ + E D + +A ASF GEI QVPPM SA+K
Sbjct: 80 KTYDAVVRLGARSSTGDAEGELL--DVREVTCDRAAVEQALASFLGEIEQVPPMHSALKK 137
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFD-IERSLEDRQNLIFRVTCSKGTYIRSLCADFG 488
G +Y+ AR G+++E + RR++I ++ +L + + RVTCSKGTYIR+L D G
Sbjct: 138 DGRPLYEYARAGQTVERAARRVTIRSIALLDCALPNAPSFTMRVTCSKGTYIRTLAEDIG 197
Query: 489 KALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
+ALG AHLT LRR ++G + D A +++E+
Sbjct: 198 EALGCGAHLTGLRRIAVGDLTLDGAVTLEQIEQ 230
>gi|417885368|ref|ZP_12529522.1| tRNA pseudouridine synthase B [Lactobacillus oris F0423]
gi|341595290|gb|EGS37939.1| tRNA pseudouridine synthase B [Lactobacillus oris F0423]
Length = 299
Score = 165 bits (417), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 84/218 (38%), Positives = 130/218 (59%), Gaps = 5/218 (2%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ + K +G TSF +LRR++K +K+GH+GTLDP G+L +CVG ATK V+
Sbjct: 4 IIPLYKERGMTSFDCVSRLRRILKTRKIGHSGTLDPSVDGVLPICVGTATKAVEYLMQSG 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWE-HIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G +G AT T D D VI++ P + I DE + A GEI QVPPM+SA+KV
Sbjct: 64 KVYQGELVIGRATETEDFDGQVIEQAPVKAAISDEAVTAAMTKLTGEITQVPPMYSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIERSLEDR----QNLIFRVTCSKGTYIRSLCA 485
G+++Y+ AR GE+++ R ++I F + R+ D+ Q++ F+V CSKGTY+R+L
Sbjct: 124 NGKRLYEYARAGETVDRPARHVTITDFTLIRNHYDQAQQEQHVFFKVACSKGTYVRTLVV 183
Query: 486 DFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
D + LG + L R G ++ D ++++A+
Sbjct: 184 DLARQLGYPGAMKWLTRLESGGFTVDQTLSLADVQDAV 221
>gi|288556939|ref|YP_003428874.1| tRNA pseudouridine 5S synthase [Bacillus pseudofirmus OF4]
gi|288548099|gb|ADC51982.1| tRNA pseudouridine 5S synthase [Bacillus pseudofirmus OF4]
Length = 306
Score = 165 bits (417), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 90/222 (40%), Positives = 131/222 (59%), Gaps = 13/222 (5%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQG 368
G + L+ KP G TS K+RRL + KKVGH GTLDP G+L +C+GKATK+
Sbjct: 6 GILALL-KPAGMTSHDCVMKIRRLYQTKKVGHTGTLDPDVVGVLPICIGKATKVAQYMSD 64
Query: 369 MIKGYSGVFRLGEATSTWDADSPVIQ----REPWEHIKDEDIRKAAASFRGEIWQVPPMF 424
K Y G +G +T+T DA V++ +PW E I SF+GEI Q+PPM+
Sbjct: 65 YSKTYVGEVTIGFSTTTEDASGEVVETKGVNKPW---SKEVIIALLDSFKGEITQIPPMY 121
Query: 425 SAIKVGGEKMYDKARRGESIELSPRRISIFQFDI--ERSLEDRQNLI---FRVTCSKGTY 479
SA+KV G+K+Y+ AR +++E R++ I + ++ + +L + N F V CSKGTY
Sbjct: 122 SAVKVNGKKLYEYARANQTVERPTRKVRIHRLELTSDLTLNETSNTFSFSFEVECSKGTY 181
Query: 480 IRSLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
+R+L D GKALG AH++ L+R + G ++ + ELEE
Sbjct: 182 VRTLAVDLGKALGFPAHMSHLKRTASGPFTTEVCTSLSELEE 223
>gi|327313348|ref|YP_004328785.1| tRNA pseudouridine synthase B [Prevotella denticola F0289]
gi|326944728|gb|AEA20613.1| tRNA pseudouridine synthase B [Prevotella denticola F0289]
Length = 233
Score = 165 bits (417), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 82/217 (37%), Positives = 125/217 (57%), Gaps = 5/217 (2%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVK-----KVGHAGTLDPMATGLLIVCVGKATKLV 363
G ++ ++KP G TSF +R L K+GHAGTLDP+ATG+LI+ GK TK +
Sbjct: 6 GVVIPIDKPYGITSFKALAHIRYLCTQANDGKVKIGHAGTLDPLATGVLILATGKMTKQI 65
Query: 364 DRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPM 423
+ Q K Y+ F+LG T ++D + V P EHI E I + F G+I Q+PP
Sbjct: 66 ETLQAHTKEYTATFQLGATTPSYDMEHEVNGTFPTEHITRELIDETLPRFVGDIEQIPPT 125
Query: 424 FSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSL 483
+SA+KV G++ ++ R GE + L P+ I I + ++ + + R+ C KGTYIR+L
Sbjct: 126 YSAVKVDGKRAFNYRRNGEEVTLKPKHIHIDEIEVLDFDTAKMRIRLRIVCGKGTYIRAL 185
Query: 484 CADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELE 520
DFG+A+ S A+LTALRR +G ++ + + +
Sbjct: 186 ARDFGRAVNSGAYLTALRRTRVGNVRVENCISYDQFD 222
>gi|125624242|ref|YP_001032725.1| tRNA pseudouridine synthase B [Lactococcus lactis subsp. cremoris
MG1363]
gi|389854599|ref|YP_006356843.1| tRNA pseudouridine synthase B [Lactococcus lactis subsp. cremoris
NZ9000]
gi|189036533|sp|A2RL47.1|TRUB_LACLM RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|124493050|emb|CAL98013.1| tRNA pseudouridine synthase B [Lactococcus lactis subsp. cremoris
MG1363]
gi|300071021|gb|ADJ60421.1| tRNA pseudouridine synthase B [Lactococcus lactis subsp. cremoris
NZ9000]
Length = 330
Score = 165 bits (417), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 84/214 (39%), Positives = 128/214 (59%), Gaps = 6/214 (2%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
V K GWTSF V KLR ++K KK+GH GTLDP TG+L + VGK+T+L++ + K Y
Sbjct: 11 VYKEAGWTSFDVVAKLRGILKTKKIGHGGTLDPSVTGVLPIAVGKSTRLLEYMEAAGKIY 70
Query: 374 SGVFRLGEATSTWDADSPVIQREPWE-HIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGE 432
G +G +T T DAD ++ + P + ++ + +I A + F G+I Q+PPM+SA+K+ G+
Sbjct: 71 EGQVTIGFSTETEDADGAIVNQTPVKNNLTESEIDSAMSHFVGKIKQIPPMYSAVKINGK 130
Query: 433 KMYDKARRGESIELSPRRISIFQFDIERSL-----EDRQNLIFRVTCSKGTYIRSLCADF 487
K+Y+ AR G++IE R I+I F + E F+V CSKGTY+R+L D
Sbjct: 131 KLYEYARAGQTIERPAREITIKSFVRTSPIDWNKEEGLVTFSFKVECSKGTYVRTLAVDL 190
Query: 488 GKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
+LG H++ L+R + DA + ++EE
Sbjct: 191 ADSLGYAGHMSKLQRTASNGLLIKDAIKLSKIEE 224
>gi|270308251|ref|YP_003330309.1| tRNA pseudouridine synthase B [Dehalococcoides sp. VS]
gi|270154143|gb|ACZ61981.1| tRNA pseudouridine synthase B [Dehalococcoides sp. VS]
Length = 300
Score = 165 bits (417), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 82/209 (39%), Positives = 128/209 (61%), Gaps = 2/209 (0%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
+NKP G TSF V K+RR+ K+VGH GTLDP ATG++ V +G++T+L++ + K Y
Sbjct: 7 INKPFGITSFDVVSKIRRIYSQKRVGHGGTLDPYATGVIPVFLGRSTRLIEYLSSVSKTY 66
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEK 433
LG T ++D++ V R+P++ I E I+ A F+G+I Q+PPM+SA+K G +
Sbjct: 67 LAEIELGTETDSYDSEGEVTSRKPFDRITREMIQTALLDFQGKITQIPPMYSAVKHRGMR 126
Query: 434 MYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKALGS 493
+Y+ AR+G +E +PR I+ + + L R+ C GTYIRS+ D G+ LG
Sbjct: 127 LYNLARQGIEVERNPRTAMIYSIKLLDC--NLPVLRLRIECGHGTYIRSIAFDLGRKLGC 184
Query: 494 CAHLTALRRDSIGQYSADDAWEFKELEEA 522
A+L +L R++ GQ++ + F +LE A
Sbjct: 185 GAYLKSLVREAYGQFNLTKSLSFADLEAA 213
>gi|451812261|ref|YP_007448715.1| tRNA pseudouridine synthase B [Candidatus Kinetoplastibacterium
galatii TCC219]
gi|451778163|gb|AGF49111.1| tRNA pseudouridine synthase B [Candidatus Kinetoplastibacterium
galatii TCC219]
Length = 237
Score = 165 bits (417), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 91/219 (41%), Positives = 125/219 (57%), Gaps = 11/219 (5%)
Query: 304 WDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLV 363
DG F L++KP G TS K+RR + +KK GH GTLDP ATGLL+ C GKATK
Sbjct: 6 LDGFF----LLDKPAGITSNLALQKVRRFLNIKKAGHTGTLDPFATGLLVCCFGKATKKS 61
Query: 364 DRYQGMIKGYSGVFRLGEATSTWDADSPVIQREP-WEHIKDEDIRKAAASFRGEIWQVPP 422
+ + K Y +LGE T T D VI++ ++ I I KA SF GEI QVPP
Sbjct: 62 NIFLNASKSYIATIKLGEETDTGDLTGKVIKKSSDFKFIDASSIEKALISFIGEIDQVPP 121
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRV--TCSKGTYI 480
M+SAIK G +Y AR G + R+++I+ ++ S +D IF + +CSKGTY+
Sbjct: 122 MYSAIKFNGIPLYKYARTGVDVYRDSRKVTIYNINLINSTDD----IFEIELSCSKGTYV 177
Query: 481 RSLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKEL 519
R+L D G+ LG AHL LRR +G + +++ + L
Sbjct: 178 RTLAQDIGRKLGCFAHLIKLRRTRVGPFLLENSITLENL 216
>gi|347534485|ref|YP_004841155.1| tRNA pseudouridine synthase B [Lactobacillus sanfranciscensis TMW
1.1304]
gi|345504541|gb|AEN99223.1| tRNA pseudouridine synthase B [Lactobacillus sanfranciscensis TMW
1.1304]
Length = 303
Score = 165 bits (417), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 87/214 (40%), Positives = 130/214 (60%), Gaps = 8/214 (3%)
Query: 316 KPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSG 375
KP G TSF K+R ++ K++GH+GTLDP G+L VC+G ATK+VD K Y G
Sbjct: 10 KPLGMTSFDCISKMRHIIHQKRIGHSGTLDPNVDGVLPVCLGHATKVVDFLMASGKIYRG 69
Query: 376 VFRLGEATSTWDADSPVI-QREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEKM 434
LG +T+T D D +I + ++ + D+ I+ +F G I Q+PPMFSA+KV G ++
Sbjct: 70 SITLGFSTTTEDLDGEIIAENYDFKPLTDKQIQTGLNNFVGNITQIPPMFSAVKVNGRRL 129
Query: 435 YDKARRGESIELSPRRISIFQF--DIERSLEDR----QNLIFRVTCSKGTYIRSLCADFG 488
YD AR GE++E P+RI+ + ++ +S+ D Q + F V C KGTY+R+L DFG
Sbjct: 130 YDYARHGETVE-RPKRIARIDYFKELGQSIIDEKTHTQTIFFEVGCGKGTYVRTLAVDFG 188
Query: 489 KALGSCAHLTALRRDSIGQYSADDAWEFKELEEA 522
K G A ++ L R G ++ D+ F++LE+A
Sbjct: 189 KKFGIPAVMSQLTRIKSGGFTLDETVTFEQLEKA 222
>gi|149002578|ref|ZP_01827510.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae SP14-BS69]
gi|225860951|ref|YP_002742460.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae
Taiwan19F-14]
gi|237649504|ref|ZP_04523756.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae CCRI 1974]
gi|237822536|ref|ZP_04598381.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae CCRI
1974M2]
gi|298230898|ref|ZP_06964579.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae str. Canada
MDR_19F]
gi|298254309|ref|ZP_06977895.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae str. Canada
MDR_19A]
gi|298502791|ref|YP_003724731.1| pseudouridylate synthase [Streptococcus pneumoniae TCH8431/19A]
gi|387788151|ref|YP_006253219.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae ST556]
gi|418085255|ref|ZP_12722437.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA47281]
gi|418119915|ref|ZP_12756866.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA18523]
gi|418144050|ref|ZP_12780850.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA13494]
gi|418189441|ref|ZP_12825956.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA47373]
gi|418195421|ref|ZP_12831901.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA47688]
gi|419425208|ref|ZP_13965406.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae 7533-05]
gi|419427161|ref|ZP_13967344.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae 5652-06]
gi|419438287|ref|ZP_13978357.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA13499]
gi|419444606|ref|ZP_13984621.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA19923]
gi|419448820|ref|ZP_13988817.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae 4075-00]
gi|419451523|ref|ZP_13991509.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae EU-NP02]
gi|419518976|ref|ZP_14058582.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA08825]
gi|421287479|ref|ZP_15738245.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA58771]
gi|421303382|ref|ZP_15754046.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA17484]
gi|147759189|gb|EDK66182.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae SP14-BS69]
gi|225727310|gb|ACO23161.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae
Taiwan19F-14]
gi|298238386|gb|ADI69517.1| pseudouridylate synthase [Streptococcus pneumoniae TCH8431/19A]
gi|353757210|gb|EHD37804.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA47281]
gi|353789028|gb|EHD69424.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA18523]
gi|353809791|gb|EHD90051.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA13494]
gi|353856583|gb|EHE36552.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA47373]
gi|353861948|gb|EHE41881.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA47688]
gi|379137893|gb|AFC94684.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae ST556]
gi|379538292|gb|EHZ03473.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA13499]
gi|379572299|gb|EHZ37256.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA19923]
gi|379618614|gb|EHZ83289.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae 5652-06]
gi|379620095|gb|EHZ84761.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae 7533-05]
gi|379623228|gb|EHZ87862.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae EU-NP02]
gi|379623878|gb|EHZ88511.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae 4075-00]
gi|379640813|gb|EIA05351.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA08825]
gi|395889888|gb|EJH00895.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA58771]
gi|395902004|gb|EJH12940.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA17484]
Length = 292
Score = 165 bits (417), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 89/217 (41%), Positives = 127/217 (58%), Gaps = 4/217 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ + K G TS KLR+++ KK+GH GTLDP G+L + VGKAT++V+ Q
Sbjct: 4 IINLKKEAGMTSHDAVFKLRKILGTKKIGHGGTLDPDVVGVLPIAVGKATRMVEFMQDEG 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDED-IRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T T DA V+ P + DE + +A AS G I Q+PPM+SA+KV
Sbjct: 64 KIYEGEITLGYSTKTEDASGEVVAETPVLSLLDEKLVDEAIASLTGPITQIPPMYSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIERSLE-DRQ--NLIFRVTCSKGTYIRSLCAD 486
G K+Y+ AR G+ +E R+++I+QF+ + D Q FRV CSKGTYIR+L D
Sbjct: 124 NGRKLYEYARAGQEVERPERQVTIYQFERTSPISYDGQLARFTFRVKCSKGTYIRTLSVD 183
Query: 487 FGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
G+ LG AH++ L R S +DA +E+ E +
Sbjct: 184 LGEKLGYAAHMSHLTRTSAAGLQLEDALALEEIAEKV 220
>gi|374986155|ref|YP_004961650.1| tRNA pseudouridine synthase B [Streptomyces bingchenggensis BCW-1]
gi|297156807|gb|ADI06519.1| tRNA pseudouridine synthase B [Streptomyces bingchenggensis BCW-1]
Length = 307
Score = 165 bits (417), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 89/223 (39%), Positives = 123/223 (55%), Gaps = 10/223 (4%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G+TS V K+RR ++VGHAGTLDPMATG+L++ V KAT+L+
Sbjct: 15 LVIVDKPAGFTSHDVVAKMRRFAGTRRVGHAGTLDPMATGVLVIGVEKATRLLGHLALTE 74
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH---IKDEDIRKAAASFRGEIWQVPPMFSAI 427
KGYS RLG+ T T DA+ + E + A+ G+I QVP SAI
Sbjct: 75 KGYSATIRLGQTTVTDDAEGEITSSAGVAGTALTAVEAVEAGIAALTGDIMQVPAKVSAI 134
Query: 428 KVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQ-------NLIFRVTCSKGTYI 480
K+ G++ Y +AR GE E+ R +++ F + E + +L V CS GTYI
Sbjct: 135 KIDGKRSYARAREGEDFEIPARPVTVSSFTLHAHREAKAEDGTPVLDLDVNVVCSSGTYI 194
Query: 481 RSLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
R+L D G LG HLTALRR +G Y A +LEE++
Sbjct: 195 RALARDLGAGLGVGGHLTALRRTRVGPYGLAAARTLPQLEESL 237
>gi|428279264|ref|YP_005560999.1| tRNA pseudouridine 55 synthase [Bacillus subtilis subsp. natto
BEST195]
gi|291484221|dbj|BAI85296.1| tRNA pseudouridine 55 synthase [Bacillus subtilis subsp. natto
BEST195]
Length = 309
Score = 165 bits (417), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 86/214 (40%), Positives = 129/214 (60%), Gaps = 4/214 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L++KP G TS K+R+L+K KKVGH GTLDP +G+L +CVG+ATK+V+
Sbjct: 5 VLLLHKPVGMTSHDCVMKIRKLLKTKKVGHTGTLDPEVSGVLPICVGRATKIVEYLTEKS 64
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y LG +T+T D ++ +P H I D+ K S +G+ Q+PPM+SA+KV
Sbjct: 65 KTYDAEITLGFSTTTEDQTGETVEIKPVNHDIDKADVEKVLNSLKGKQEQIPPMYSAVKV 124
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIERSLE---DRQNLIFRVTCSKGTYIRSLCAD 486
G+K+Y+ AR G +E R I+I + ++ + + F VTCSKGTY+R+L
Sbjct: 125 NGKKLYEYARAGIEVERPKRMITIEDIALTTEIKHHGETASFRFTVTCSKGTYVRTLAVM 184
Query: 487 FGKALGSCAHLTALRRDSIGQYSADDAWEFKELE 520
G+ LG AH++ L R + G +S D+ + F ELE
Sbjct: 185 IGEKLGYPAHMSHLIRTASGDFSLDECFTFDELE 218
>gi|345855392|ref|ZP_08808119.1| tRNA pseudouridine synthase B [Streptomyces zinciresistens K42]
gi|345633144|gb|EGX54924.1| tRNA pseudouridine synthase B [Streptomyces zinciresistens K42]
Length = 301
Score = 165 bits (417), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 88/221 (39%), Positives = 123/221 (55%), Gaps = 7/221 (3%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G+TS V K+R + + ++VGHAGTLDPMATG+L++ V KATKL+
Sbjct: 11 LVIVDKPSGFTSHDVVAKMRGIARTRRVGHAGTLDPMATGVLVLGVEKATKLLGHLALTE 70
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y G RLG+ T T DA+ + + I A G+I QVP SAIK+
Sbjct: 71 KEYLGTVRLGQTTLTDDAEGETTGSTDASKVTRDGIDAGIALLSGDIMQVPSKVSAIKID 130
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQ-------NLIFRVTCSKGTYIRSL 483
G + Y +AR GE E+ R +++ F + E +L+ V CS GTYIR+L
Sbjct: 131 GVRSYKRAREGEEFEIPARPVTVSSFSVHDVREAVAADGTPVLDLVVSVVCSSGTYIRAL 190
Query: 484 CADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAIT 524
D G LG HLTALRR +G Y D A ++L++ +T
Sbjct: 191 ARDLGAGLGVGGHLTALRRTRVGPYKLDSARTLEQLQQELT 231
>gi|116491306|ref|YP_810850.1| pseudouridine synthase [Oenococcus oeni PSU-1]
gi|290890857|ref|ZP_06553923.1| hypothetical protein AWRIB429_1313 [Oenococcus oeni AWRIB429]
gi|419758091|ref|ZP_14284412.1| pseudouridine synthase [Oenococcus oeni AWRIB304]
gi|419857483|ref|ZP_14380190.1| pseudouridine synthase [Oenococcus oeni AWRIB202]
gi|419858888|ref|ZP_14381546.1| pseudouridine synthase [Oenococcus oeni DSM 20252 = AWRIB129]
gi|421185122|ref|ZP_15642535.1| pseudouridine synthase [Oenococcus oeni AWRIB318]
gi|421185953|ref|ZP_15643349.1| pseudouridine synthase [Oenococcus oeni AWRIB418]
gi|421188082|ref|ZP_15645422.1| pseudouridine synthase [Oenococcus oeni AWRIB419]
gi|421189966|ref|ZP_15647273.1| pseudouridine synthase [Oenococcus oeni AWRIB422]
gi|421191602|ref|ZP_15648874.1| pseudouridine synthase [Oenococcus oeni AWRIB548]
gi|421193389|ref|ZP_15650636.1| pseudouridine synthase [Oenococcus oeni AWRIB553]
gi|421194520|ref|ZP_15651739.1| pseudouridine synthase [Oenococcus oeni AWRIB568]
gi|421196463|ref|ZP_15653648.1| pseudouridine synthase [Oenococcus oeni AWRIB576]
gi|122276512|sp|Q04ED7.1|TRUB_OENOB RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|116092031|gb|ABJ57185.1| tRNA pseudouridine synthase B [Oenococcus oeni PSU-1]
gi|290479508|gb|EFD88166.1| hypothetical protein AWRIB429_1313 [Oenococcus oeni AWRIB429]
gi|399905259|gb|EJN92706.1| pseudouridine synthase [Oenococcus oeni AWRIB304]
gi|399965312|gb|EJN99937.1| pseudouridine synthase [Oenococcus oeni AWRIB318]
gi|399966123|gb|EJO00673.1| pseudouridine synthase [Oenococcus oeni AWRIB419]
gi|399968149|gb|EJO02603.1| pseudouridine synthase [Oenococcus oeni AWRIB418]
gi|399971306|gb|EJO05556.1| pseudouridine synthase [Oenococcus oeni AWRIB548]
gi|399971400|gb|EJO05649.1| pseudouridine synthase [Oenococcus oeni AWRIB422]
gi|399972032|gb|EJO06251.1| pseudouridine synthase [Oenococcus oeni AWRIB553]
gi|399977052|gb|EJO11050.1| pseudouridine synthase [Oenococcus oeni AWRIB576]
gi|399977640|gb|EJO11616.1| pseudouridine synthase [Oenococcus oeni AWRIB568]
gi|410497511|gb|EKP88983.1| pseudouridine synthase [Oenococcus oeni DSM 20252 = AWRIB129]
gi|410498049|gb|EKP89515.1| pseudouridine synthase [Oenococcus oeni AWRIB202]
Length = 298
Score = 165 bits (417), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 96/227 (42%), Positives = 132/227 (58%), Gaps = 6/227 (2%)
Query: 308 FGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQ 367
+ +VLV+KP G TSF V KLR++ + K+VGH GTLDP TGLL++ +GKATKL+D Q
Sbjct: 2 YNGIVLVDKPAGLTSFDVVAKLRKIFQQKQVGHTGTLDPSVTGLLVIVLGKATKLIDYLQ 61
Query: 368 GMIKGYSGVFRLGEATSTWDADSPVIQREPW-EHIKDEDIRKAAASFRGEIWQVPPMFSA 426
K Y G LG T T D D V + + E I D + A SF G Q+PPM+SA
Sbjct: 62 ENQKQYRGTLILGLKTDTQDMDGQVTEMQFLKEAIADFKKKAAFDSFLGSSDQLPPMYSA 121
Query: 427 IKVGGEKMYDKARRGESIELSPRRISIFQF-DIERSLED----RQNLIFRVTCSKGTYIR 481
+KVGG+ +Y+ AR+GE+IE R+I + +F + S D ++ + F T SKGTYIR
Sbjct: 122 VKVGGKHLYELARKGETIERKSRKIKVMEFQQVGGSKFDASKGQEYINFVATVSKGTYIR 181
Query: 482 SLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAITKNYF 528
+L DFG LG A + LRR Y ++ +E+ + T F
Sbjct: 182 TLIEDFGAKLGLPATMMRLRRIEADGYDVKNSINLEEILASKTPRKF 228
>gi|296139441|ref|YP_003646684.1| tRNA pseudouridine synthase B [Tsukamurella paurometabola DSM
20162]
gi|296027575|gb|ADG78345.1| tRNA pseudouridine synthase B [Tsukamurella paurometabola DSM
20162]
Length = 297
Score = 165 bits (417), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 88/213 (41%), Positives = 121/213 (56%), Gaps = 2/213 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++V+KP G TS V + RR + +KVGHAGTLDPMATG+L++ + +ATKL+
Sbjct: 11 LIIVDKPAGLTSHDVVARCRRAMGTRKVGHAGTLDPMATGVLVIGIERATKLLGHLALTT 70
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K YS RLG +TST DA+ + + D D+ A A G+I QVP SAIKV
Sbjct: 71 KAYSATVRLGASTSTDDAEGEITGGAAAAGLSDADVIAAMAPLTGDIEQVPSTVSAIKVD 130
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIE--RSLEDRQNLIFRVTCSKGTYIRSLCADFG 488
G++ + R G ++L+ R + + +F R D ++ V CS GTY+R+L D G
Sbjct: 131 GKRAHQLVREGADVQLTARPVRVDEFAAHAFRRDGDFLDVDVHVECSSGTYVRALARDLG 190
Query: 489 KALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
ALG HLTALRR +G Y D A EL E
Sbjct: 191 AALGVGGHLTALRRTRVGPYGLDLAVTLDELFE 223
>gi|206890408|ref|YP_002248399.1| tRNA pseudouridine synthase B [Thermodesulfovibrio yellowstonii DSM
11347]
gi|206742346|gb|ACI21403.1| tRNA pseudouridine synthase B [Thermodesulfovibrio yellowstonii DSM
11347]
Length = 302
Score = 165 bits (417), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 92/217 (42%), Positives = 139/217 (64%), Gaps = 2/217 (0%)
Query: 310 TMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGM 369
+V++NKPKG+TS K+++++KVKK GHAGTLDPMATG+LIVC+ +ATK+ +
Sbjct: 3 AVVVLNKPKGFTSQDTVTKVKKILKVKKAGHAGTLDPMATGILIVCINEATKITPFLMEL 62
Query: 370 IKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y + G +T T+DA+ +++ ++ E + F GEI Q+PPM+SA+KV
Sbjct: 63 EKEYVFKAKFGISTDTYDAEGKIVRVVEDFKLEREQVESILEEFTGEIMQIPPMYSAVKV 122
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGK 489
GG+ +++ AR+G IE P+++ I IE S E + FRV CSKGTY+RSLC D G+
Sbjct: 123 GGKPLHELARKGVEIERKPKKVIIHSIKIE-SFEP-PFVTFRVVCSKGTYVRSLCHDIGE 180
Query: 490 ALGSCAHLTALRRDSIGQYSADDAWEFKELEEAITKN 526
L AH+ L R IG++ +++ E +EL+ I+ N
Sbjct: 181 KLRIGAHIVELTRTRIGEFRVEESIELEELKSLISNN 217
>gi|260592690|ref|ZP_05858148.1| tRNA pseudouridine synthase B [Prevotella veroralis F0319]
gi|260535460|gb|EEX18077.1| tRNA pseudouridine synthase B [Prevotella veroralis F0319]
Length = 232
Score = 165 bits (417), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 84/217 (38%), Positives = 123/217 (56%), Gaps = 5/217 (2%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVK-----KVGHAGTLDPMATGLLIVCVGKATKLV 363
G ++ ++KP G TSF +R L K+GHAGTLDP+ATG+LI+ GK TK +
Sbjct: 6 GVIIPIDKPYGITSFKALAHVRYLCTQANDGKVKIGHAGTLDPLATGVLILATGKMTKQI 65
Query: 364 DRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPM 423
+ Q K Y +LG T ++D + V ++ P EHI E I K F G+I Q+PP
Sbjct: 66 ETLQAHTKEYVATLQLGATTPSYDMEHEVNEKFPVEHITRELIDKTLPQFVGDIEQIPPT 125
Query: 424 FSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSL 483
+SA+KV G++ +D R G+ + L + I I + ++ + L RV C KGTYIR+L
Sbjct: 126 YSAVKVDGKRAFDYRRSGKEVVLKAKNIHIDEIEVLNFDTAKMQLTIRVGCGKGTYIRAL 185
Query: 484 CADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELE 520
D G+A+ S A+LTALRR +G +D + + E
Sbjct: 186 ARDLGRAMNSGAYLTALRRTRVGDVKVEDCVNYDQFE 222
>gi|402574029|ref|YP_006623372.1| tRNA pseudouridine synthase B [Desulfosporosinus meridiei DSM
13257]
gi|402255226|gb|AFQ45501.1| tRNA pseudouridine synthase B [Desulfosporosinus meridiei DSM
13257]
Length = 294
Score = 165 bits (417), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 85/217 (39%), Positives = 130/217 (59%), Gaps = 2/217 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ V KP G TS V +RR +K+KKVGH GTLDP G+L +CVGKAT+L +
Sbjct: 4 IINVLKPPGMTSSDVVVWIRRSLKMKKVGHTGTLDPGVAGVLPICVGKATRLAEYITDQG 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y + G T T DA VIQ E + D+ + F G+I Q+PP+FSA++
Sbjct: 64 KKYIAEVKFGITTDTQDAYGKVIQ-ETLPSLDKADLERILPDFTGKISQLPPLFSAVRKE 122
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLE-DRQNLIFRVTCSKGTYIRSLCADFGK 489
G+ +Y+ AR+G IE++PR + I++ ++E+ + + + + CSKGTYIR++C D G+
Sbjct: 123 GKHLYEYARKGIPIEITPREVIIYKLNLEQWYQGEFPKAVLNIECSKGTYIRTICHDLGQ 182
Query: 490 ALGSCAHLTALRRDSIGQYSADDAWEFKELEEAITKN 526
LG AH++ L R G + ++W +E+EEA+ N
Sbjct: 183 TLGCGAHMSYLVRVRSGSFKIQESWTLEEIEEAVRNN 219
>gi|15901075|ref|NP_345679.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae TIGR4]
gi|111657814|ref|ZP_01408531.1| hypothetical protein SpneT_02000996 [Streptococcus pneumoniae
TIGR4]
gi|418187216|ref|ZP_12823743.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA47360]
gi|418229954|ref|ZP_12856557.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae EU-NP01]
gi|421270635|ref|ZP_15721490.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae SPAR48]
gi|37089639|sp|Q97QJ3.1|TRUB_STRPN RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|14972693|gb|AAK75319.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae TIGR4]
gi|353851510|gb|EHE31502.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA47360]
gi|353887476|gb|EHE67254.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae EU-NP01]
gi|395867764|gb|EJG78884.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae SPAR48]
Length = 292
Score = 165 bits (417), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 89/217 (41%), Positives = 127/217 (58%), Gaps = 4/217 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ + K G TS KLR+++ KK+GH GTLDP G+L + VGKAT++V+ Q
Sbjct: 4 IINLKKEAGMTSHDAVFKLRKILGTKKIGHGGTLDPDVVGVLPIAVGKATRMVEFMQDEG 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDED-IRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T T DA V+ P + DE + +A AS G I Q+PPM+SA+KV
Sbjct: 64 KIYEGEITLGYSTKTEDASGEVVAETPVLSLLDEKLVDEAIASLTGPITQIPPMYSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIERSLE-DRQ--NLIFRVTCSKGTYIRSLCAD 486
G K+Y+ AR G+ +E R+++I+QF+ + D Q FRV CSKGTYIR+L D
Sbjct: 124 NGRKLYEYARAGQEVERPERQVTIYQFERTSPISYDGQLARFTFRVKCSKGTYIRTLSVD 183
Query: 487 FGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
G+ LG AH++ L R S +DA +E+ E +
Sbjct: 184 LGEKLGYAAHMSHLTRTSAAGLQLEDALALEEIAEKV 220
>gi|350572307|ref|ZP_08940611.1| tRNA pseudouridine synthase B [Neisseria wadsworthii 9715]
gi|349790430|gb|EGZ44341.1| tRNA pseudouridine synthase B [Neisseria wadsworthii 9715]
Length = 338
Score = 165 bits (417), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 88/210 (41%), Positives = 119/210 (56%), Gaps = 3/210 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L++KP G +S + K RR+ +K GH G LDP+ATGLL VC G+ATK
Sbjct: 45 VLLLDKPTGLSSNSALQKARRIFNAEKAGHTGVLDPLATGLLPVCFGEATKFAQYLLDAD 104
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
KGY+ +LGEAT+T DA+ +I P + E + A + G I QVPPMFSA+K
Sbjct: 105 KGYTATLKLGEATTTGDAEGEIIATAPIPESR-EGFQAACTALTGAIRQVPPMFSALKHE 163
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKA 490
G +Y+ AR+G IE PR I I +I + + V CSKGTYIR+L D K
Sbjct: 164 GRPLYEYARKGIVIERKPRDIIIHSIEITEFSPPKA--VIDVRCSKGTYIRTLSEDIAKK 221
Query: 491 LGSCAHLTALRRDSIGQYSADDAWEFKELE 520
+G+ AHLTALRR +S + + LE
Sbjct: 222 MGTFAHLTALRRTETAGFSINQTHTLESLE 251
>gi|444335627|ref|YP_007391996.1| tRNA pseudouridine synthase B [Blattabacterium sp. (Blatta
orientalis) str. Tarazona]
gi|444300006|gb|AGD98243.1| tRNA pseudouridine synthase B [Blattabacterium sp. (Blatta
orientalis) str. Tarazona]
Length = 226
Score = 165 bits (417), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 87/211 (41%), Positives = 136/211 (64%), Gaps = 9/211 (4%)
Query: 311 MVLVNKPKGWTSFTVCGKLRR-----LVKVKKVGHAGTLDPMATGLLIVCVGKA-TKLVD 364
++L++KP GWTSF V +R+ L K K+GHAGTLDP+ATGLLI+ +G+ TK D
Sbjct: 14 LLLIDKPWGWTSFKVVKIIRKKIRNFLGKNLKIGHAGTLDPLATGLLIILIGREYTKKTD 73
Query: 365 RYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMF 424
Q K Y+G+ +LG T ++D+++ HI E +++ + F+GEI Q+PP F
Sbjct: 74 SIQNYKKTYTGIIKLGCTTQSFDSETEEYNFSSTSHITPELVQEISKKFKGEIDQIPPSF 133
Query: 425 SAIKVGGEKMYDKARRGESI-ELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSL 483
SA+++ G++ Y+ AR+G+ I + PR++ I++F I + + F V C KGTYIRS+
Sbjct: 134 SALRMEGKRFYEYARKGKKINSMKPRKVKIYKFYILKI--GIPYIQFFVECGKGTYIRSI 191
Query: 484 CADFGKALGSCAHLTALRRDSIGQYSADDAW 514
DFG A+ S A+L +LRR+SIG +S +++
Sbjct: 192 AKDFGIAMKSGAYLLSLRRESIGPFSIRNSY 222
>gi|378717573|ref|YP_005282462.1| tRNA pseudouridine synthase B [Gordonia polyisoprenivorans VH2]
gi|375752276|gb|AFA73096.1| tRNA pseudouridine synthase B [Gordonia polyisoprenivorans VH2]
Length = 305
Score = 165 bits (417), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 92/219 (42%), Positives = 126/219 (57%), Gaps = 8/219 (3%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+K G TS V + R++ ++VGHAGTLDPMATG+L++ V +ATKL+
Sbjct: 11 LVIVDKAAGITSHDVVSRCRKIFNTRRVGHAGTLDPMATGVLVIGVERATKLLGLLSLTT 70
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y+ RLG AT T D + +I R I D++I +A A G+I QVP SAIKV
Sbjct: 71 KSYTATIRLGAATDTDDREGRIISRGAVSAICDDEITRAVADLTGDISQVPAKVSAIKVD 130
Query: 431 GEKMYDKARRGESIELSPRRISIFQFD---IERSLEDRQ-----NLIFRVTCSKGTYIRS 482
G + + AR G +L+ R + + +F+ I R +D +L V CS GTYIRS
Sbjct: 131 GRRAHALARTGAEFDLAARPVRVSRFEIRAIRRPGDDGGESGFLDLDVEVDCSAGTYIRS 190
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
L D G ALGS HLTALRR ++G ++ D A L E
Sbjct: 191 LARDLGDALGSGGHLTALRRTAVGPFTLDHARTLDVLAE 229
>gi|118617697|ref|YP_906029.1| tRNA pseudouridine synthase B [Mycobacterium ulcerans Agy99]
gi|189036545|sp|A0PQD9.1|TRUB_MYCUA RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|118569807|gb|ABL04558.1| tRNA pseudouridine synthase B TruB [Mycobacterium ulcerans Agy99]
Length = 301
Score = 165 bits (417), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 90/220 (40%), Positives = 126/220 (57%), Gaps = 4/220 (1%)
Query: 306 GP-FG-TMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLV 363
GP FG +V+V+KP TS V G+ RR+ +++GHAGTLDPMATG+L++ + +ATK++
Sbjct: 7 GPGFGPGIVVVDKPGAMTSHDVVGRCRRIFGTRRLGHAGTLDPMATGVLVIGIERATKIL 66
Query: 364 DRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPM 423
K Y+ RLG+ TST DA+ + EH+ E I A G+I QVP
Sbjct: 67 GLLIATSKSYAATIRLGQTTSTEDAEGEPLASVSAEHVAPEAIAAAILDLTGDIRQVPSA 126
Query: 424 FSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIE--RSLEDRQNLIFRVTCSKGTYIR 481
SAIKV G + Y AR G+++EL+ R + I +F++ R D ++ V CS GTYIR
Sbjct: 127 VSAIKVDGRRAYQLAREGQTVELAARPVRIDRFELMDLRRGADVIDIDVEVDCSSGTYIR 186
Query: 482 SLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
+L D G AL HLT+LRR + + A EL E
Sbjct: 187 ALARDLGAALDVGGHLTSLRRTRVSHFDLSQAASLDELAE 226
>gi|346992025|ref|ZP_08860097.1| tRNA pseudouridine synthase B [Ruegeria sp. TW15]
Length = 301
Score = 164 bits (416), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 90/210 (42%), Positives = 129/210 (61%), Gaps = 2/210 (0%)
Query: 312 VLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIK 371
++V+KP G TS V K+R + KK GHAGTLDP ATG+L V +G+ATK V +K
Sbjct: 14 LVVDKPAGMTSTAVVNKVRWAMDAKKAGHAGTLDPEATGVLAVALGEATKTVPYITDALK 73
Query: 372 GYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGG 431
Y+ RLG+AT+T DA+ VI E DEDI++A + F G+I QVPP FSA+K+ G
Sbjct: 74 AYTFTVRLGQATNTDDAEGEVIS-ESSARPTDEDIKQALSPFLGDIMQVPPKFSAVKIDG 132
Query: 432 EKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKAL 491
++ Y AR GE +ELS R + + + I D +++ +TC KG Y+RS+ D G+AL
Sbjct: 133 QRAYKLARDGEDVELSARPLWVEEL-ILVDRPDTDHVVLEMTCGKGGYVRSIARDLGEAL 191
Query: 492 GSCAHLTALRRDSIGQYSADDAWEFKELEE 521
G H+ LRR G + A+D ++++E
Sbjct: 192 GCYGHVKELRRIWSGPFEAEDGLSIEQIDE 221
>gi|322375375|ref|ZP_08049888.1| tRNA pseudouridine synthase B [Streptococcus sp. C300]
gi|321279638|gb|EFX56678.1| tRNA pseudouridine synthase B [Streptococcus sp. C300]
Length = 292
Score = 164 bits (416), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 88/213 (41%), Positives = 125/213 (58%), Gaps = 4/213 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ + K G TS KLR+++ KK+GH GTLDP G+L + VGKAT++V+ Q
Sbjct: 4 IINLKKEAGMTSHDAVFKLRKILGTKKIGHGGTLDPDVVGVLPIAVGKATRMVEFMQDEG 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIR-KAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V+ P DE I +A AS G I Q+PPM+SA+KV
Sbjct: 64 KVYEGEITLGYSTTTEDASGEVVAETPVLSPLDETIVDEAIASLIGPITQIPPMYSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLI---FRVTCSKGTYIRSLCAD 486
G K+Y+ AR G+ +E R+++I+QF+ + +L+ FRV CSKGTYIR+L D
Sbjct: 124 NGRKLYEYARAGQEVERPERQVTIYQFERTSPISYEDDLVRFTFRVKCSKGTYIRTLSVD 183
Query: 487 FGKALGSCAHLTALRRDSIGQYSADDAWEFKEL 519
G+ LG AH++ L R S +DA E+
Sbjct: 184 LGEKLGYAAHMSHLTRTSAAGLQLEDALTLNEI 216
>gi|291613951|ref|YP_003524108.1| tRNA pseudouridine synthase B [Sideroxydans lithotrophicus ES-1]
gi|291584063|gb|ADE11721.1| tRNA pseudouridine synthase B [Sideroxydans lithotrophicus ES-1]
Length = 313
Score = 164 bits (416), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 90/214 (42%), Positives = 121/214 (56%), Gaps = 3/214 (1%)
Query: 307 PFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRY 366
P ++L +KP +S T K+RRL +K GH GTLDP+ATGLL VC G+ATK
Sbjct: 14 PLDGVLLFDKPLELSSNTALQKVRRLYGAEKAGHTGTLDPLATGLLPVCFGEATKFTTAL 73
Query: 367 QGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSA 426
K Y RLG+ T+T DA+ + + E + + R A F GE Q+PPM SA
Sbjct: 74 LDADKRYRATIRLGQRTTTGDAEGEITETRQVE-VNETQARAVLAMFMGETQQLPPMHSA 132
Query: 427 IKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCAD 486
IK G +Y+ R+GE++E R + I + +ER D L F V CSKGTY+R+L D
Sbjct: 133 IKHQGRPLYEYIRKGETVERELRPVFIRELTLERLQGD--ELEFSVLCSKGTYVRTLAED 190
Query: 487 FGKALGSCAHLTALRRDSIGQYSADDAWEFKELE 520
+ LG HL ALRR IG++S DA+ +LE
Sbjct: 191 ISEKLGCGGHLVALRRTGIGEFSLKDAYTLAQLE 224
>gi|387815577|ref|YP_005431067.1| tRNA pseudouridine synthase [Marinobacter hydrocarbonoclasticus
ATCC 49840]
gi|381340597|emb|CCG96644.1| tRNA pseudouridine synthase [Marinobacter hydrocarbonoclasticus
ATCC 49840]
Length = 307
Score = 164 bits (416), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 85/210 (40%), Positives = 126/210 (60%), Gaps = 2/210 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++++KP+G TS + +++RL K GH G LDP+ATG+L +C G+ATK
Sbjct: 13 ILVIDKPQGVTSNGILQQVKRLYGAAKAGHTGALDPLATGVLPLCFGEATKFSQTMLDSD 72
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y RLG T T D++ V++ +P H +E++ A FRG+I QVP M+SA+K
Sbjct: 73 KAYITTARLGIRTETGDSEGAVVEEKPVPHFSEEEVEAVLARFRGDIQQVPSMYSALKHQ 132
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKA 490
G+ +Y+ AR G IE R ++I++ + E Q L VTC+KGTYIRSL D G+
Sbjct: 133 GKPLYEYAREGIEIERPARPVTIYELKLLAVRE--QELDLAVTCTKGTYIRSLVEDIGEV 190
Query: 491 LGSCAHLTALRRDSIGQYSADDAWEFKELE 520
LG AH++ALRR Y+ +A + K+LE
Sbjct: 191 LGCGAHVSALRRTLASGYTLANAHDVKDLE 220
>gi|295110270|emb|CBL24223.1| tRNA pseudouridine synthase B [Ruminococcus obeum A2-162]
Length = 294
Score = 164 bits (416), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 87/210 (41%), Positives = 126/210 (60%), Gaps = 3/210 (1%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
+ K KG+TSF V KLR ++ +KK+GH GTLDP A G+L V +GKATKLVD K Y
Sbjct: 7 IRKEKGYTSFDVVAKLRGILHMKKIGHTGTLDPEAEGVLPVVLGKATKLVDLLTDKQKTY 66
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEK 433
+ LG T T D V+ + E + +ED+ F GE Q+PPM+SA+KV G+K
Sbjct: 67 EALLHLGLETDTQDMTGTVLCEKSVE-VSEEDVEAVIREFVGEYQQIPPMYSALKVDGKK 125
Query: 434 MYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKALGS 493
+Y+ AR G+++E R + ++ DI+ + + F VTCSKGTYIR+LC D G+ LG
Sbjct: 126 LYELAREGKTVERKARTVHFYEIDIKEI--NLPYVRFSVTCSKGTYIRTLCHDIGQKLGC 183
Query: 494 CAHLTALRRDSIGQYSADDAWEFKELEEAI 523
+ L R G ++ +D+ E+E+A+
Sbjct: 184 GGCMEELIRTRSGNFTWEDSMTLAEVEDAV 213
>gi|335045336|ref|ZP_08538359.1| tRNA pseudouridine synthase B [Oribacterium sp. oral taxon 108 str.
F0425]
gi|333759122|gb|EGL36679.1| tRNA pseudouridine synthase B [Oribacterium sp. oral taxon 108 str.
F0425]
Length = 543
Score = 164 bits (416), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 90/221 (40%), Positives = 128/221 (57%), Gaps = 12/221 (5%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ VNK G TSF V L+++++ KK+GHAGTLDPMA G+L+VCVGKATKLVD +
Sbjct: 4 IINVNKEAGMTSFDVLRALKKILREKKMGHAGTLDPMAEGVLLVCVGKATKLVDSLMSEV 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y LG T T D+ + E + E++ A S G+ Q+PPM+SA KV
Sbjct: 64 KVYRAELLLGVETDTEDSTGKRLSEEE-NCVTKEEVLSAFHSLLGKREQIPPMYSAKKVE 122
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLE-----------DRQNLIFRVTCSKGTY 479
G+++Y AR G IE P I IF ++ E Q + FRV CSKGTY
Sbjct: 123 GKRLYSMAREGIVIERKPSPIEIFSIELLSLTEPEPFEGLSCRGKHQRISFRVKCSKGTY 182
Query: 480 IRSLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELE 520
IR+LC + G+ LG+ A ++AL R+ +G++ ++ E+E
Sbjct: 183 IRTLCTEIGEKLGTKACMSALTREEVGEFHLKESKTLSEIE 223
>gi|333923677|ref|YP_004497257.1| tRNA pseudouridine synthase B [Desulfotomaculum carboxydivorans
CO-1-SRB]
gi|333749238|gb|AEF94345.1| tRNA pseudouridine synthase B [Desulfotomaculum carboxydivorans
CO-1-SRB]
Length = 310
Score = 164 bits (416), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 88/214 (41%), Positives = 129/214 (60%), Gaps = 3/214 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ V KP G TS V +R++ KK GH GTLDP ATG+L VC+GKAT+L
Sbjct: 4 IINVLKPPGMTSHDVVYFVRKITGAKKCGHTGTLDPGATGVLPVCLGKATRLARFVTEGN 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y LG +T+T DA +++ + I E I SF G+I Q PPM SAIK+
Sbjct: 64 KSYRAEMTLGVSTTTQDAFGDIVELKDAFQIYPEQIDNLLPSFIGDIKQTPPMASAIKIN 123
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERS---LEDRQNLIFRVTCSKGTYIRSLCADF 487
G+++YD AR+G+SI++ R ++IF + +S ++F VTCSKGTY+R+LCAD
Sbjct: 124 GQRLYDLARQGQSIDVPTRIVTIFDLRVVQSNNWGTAHPRILFDVTCSKGTYVRTLCADI 183
Query: 488 GKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
G+ALG A+++ L R + +S D A+ ++L +
Sbjct: 184 GRALGCGAYMSFLLRTRVAGFSIDHAYTLEDLTD 217
>gi|340363139|ref|ZP_08685488.1| tRNA pseudouridine synthase B [Neisseria macacae ATCC 33926]
gi|339886590|gb|EGQ76234.1| tRNA pseudouridine synthase B [Neisseria macacae ATCC 33926]
Length = 353
Score = 164 bits (416), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 89/215 (41%), Positives = 124/215 (57%), Gaps = 3/215 (1%)
Query: 307 PFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRY 366
P ++L++KP+G +S T K RRL +K GH G LDP+ATGLL VC G+ATK
Sbjct: 58 PVNGVLLLDKPEGLSSNTALQKARRLYNAEKAGHTGVLDPLATGLLPVCFGEATKFAQYL 117
Query: 367 QGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSA 426
K Y+ +LGEA+ST DA+ +I + I + + A + G I QVPPMFSA
Sbjct: 118 LDADKAYTATLKLGEASSTGDAEGEIIATARAD-ISLAEFQTACQALTGNIRQVPPMFSA 176
Query: 427 IKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCAD 486
+K G+ +Y+ AR+G IE PR I+I+ DI + + V CSKGTYIR+L D
Sbjct: 177 LKHEGKPLYEYARKGIVIERKPRDITIYAIDITEF--NAPKAVIDVRCSKGTYIRTLSED 234
Query: 487 FGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
K +G+ AHLTALRR ++ ++ + L E
Sbjct: 235 IAKHIGTFAHLTALRRTETAGFTIRESHTLEALAE 269
>gi|401683504|ref|ZP_10815390.1| tRNA pseudouridine(55) synthase [Streptococcus sp. BS35b]
gi|418975713|ref|ZP_13523611.1| tRNA pseudouridine synthase B [Streptococcus oralis SK1074]
gi|383347159|gb|EID25160.1| tRNA pseudouridine synthase B [Streptococcus oralis SK1074]
gi|400187582|gb|EJO21776.1| tRNA pseudouridine(55) synthase [Streptococcus sp. BS35b]
Length = 292
Score = 164 bits (416), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 88/217 (40%), Positives = 126/217 (58%), Gaps = 4/217 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ + K G TS KLR+++ KK+GH GTLDP G+L + VGKAT++V+ Q
Sbjct: 4 IINLKKEAGMTSHDAVFKLRKILGTKKIGHGGTLDPDVVGVLPIAVGKATRMVEFMQDEG 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDE-DIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V+ P DE + +A AS G I Q+PPM+SA+KV
Sbjct: 64 KVYEGEITLGYSTTTEDASGEVVAETPVLSPLDETTVDEAIASLTGPITQIPPMYSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNL---IFRVTCSKGTYIRSLCAD 486
G K+Y+ AR G+ +E R+++I+QF+ + +L FRV CSKGTYIR+L D
Sbjct: 124 NGRKLYEYARAGQEVERPERQVAIYQFERTSPISYENHLARFTFRVKCSKGTYIRTLSVD 183
Query: 487 FGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
G+ LG AH++ L R S +DA E+ E +
Sbjct: 184 LGEKLGYAAHMSHLTRTSAAGLQLEDALTLDEIAEKV 220
>gi|260438335|ref|ZP_05792151.1| tRNA pseudouridine synthase B [Butyrivibrio crossotus DSM 2876]
gi|292808922|gb|EFF68127.1| tRNA pseudouridine synthase B [Butyrivibrio crossotus DSM 2876]
Length = 293
Score = 164 bits (416), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 89/219 (40%), Positives = 127/219 (57%), Gaps = 3/219 (1%)
Query: 308 FGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQ 367
+ ++ V K G+TS V KLR ++ KK+GH GTLDP ATG+L VC+G AT+L D
Sbjct: 2 YNGIINVYKESGFTSHDVVAKLRGILHQKKIGHTGTLDPEATGVLPVCLGNATRLCDMIT 61
Query: 368 GMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAI 427
K Y V LG +T T DA ++ R+ ++ +DI K SF G+ QVPPM+SA+
Sbjct: 62 DKSKEYRAVLLLGISTDTEDATGKILSRKAV-NVTAKDIEKTINSFAGKYNQVPPMYSAL 120
Query: 428 KVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADF 487
KV G+K+ D AR+G IE PR + I+ IE+ D + V CSKGTYIRSLC D
Sbjct: 121 KVNGQKLCDLARKGVEIERKPREVFIYDIIIEKI--DIPEVTMTVKCSKGTYIRSLCRDI 178
Query: 488 GKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAITKN 526
G+ L + + +L R G ++ ++A E+ + + N
Sbjct: 179 GEKLNTGGTMKSLVRTRTGIFNIENAVRLSEISKCVADN 217
>gi|350567623|ref|ZP_08936031.1| tRNA pseudouridine synthase B [Propionibacterium avidum ATCC 25577]
gi|348662386|gb|EGY79049.1| tRNA pseudouridine synthase B [Propionibacterium avidum ATCC 25577]
Length = 298
Score = 164 bits (416), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 92/206 (44%), Positives = 122/206 (59%), Gaps = 3/206 (1%)
Query: 305 DGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVD 364
D P G +V V+KP G TS V G++RRL+ +KVGHAGTLDPMATG+L+V V +AT+L+
Sbjct: 6 DVPSGVLV-VDKPAGVTSHQVVGRVRRLMGTRKVGHAGTLDPMATGVLVVGVNRATRLLG 64
Query: 365 RYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMF 424
K Y+ +LG +T T DA+ I DE I A A GEI QVP
Sbjct: 65 HLSLQDKDYTATMKLGVSTVTDDAEGDSTGAIDASGIDDEAIIAAMARQTGEIQQVPTAV 124
Query: 425 SAIKVGGEKMYDKARRGESIELSPRRISIFQFDIE--RSLEDRQNLIFRVTCSKGTYIRS 482
SAIK+ G++ Y K R GE + L PR +++ +F+ R + ++ VTCS GTY+R+
Sbjct: 125 SAIKINGQRAYAKVRAGEDVVLKPRAVTVSRFEATEIRRHGEVIDVDVEVTCSSGTYVRA 184
Query: 483 LCADFGKALGSCAHLTALRRDSIGQY 508
L D G LG HLTALRR IG +
Sbjct: 185 LARDVGADLGVGGHLTALRRTRIGPF 210
>gi|254876542|ref|ZP_05249252.1| tRNA pseudouridine synthetase B [Francisella philomiragia subsp.
philomiragia ATCC 25015]
gi|254842563|gb|EET20977.1| tRNA pseudouridine synthetase B [Francisella philomiragia subsp.
philomiragia ATCC 25015]
Length = 302
Score = 164 bits (416), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 86/213 (40%), Positives = 128/213 (60%), Gaps = 5/213 (2%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V++NK +G +S V +L+ + +K GH GTLDPMATG+L +C G+ATK+
Sbjct: 11 VVVINKTQGLSSNKVLQQLKYIFNAQKAGHTGTLDPMATGVLPICFGRATKIAQYLLDSD 70
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREP-WEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y +LG T + DA+ +I + + E + A FRG+I Q+PPM+SA+K
Sbjct: 71 KEYIATIKLGVETDSGDAEGEIIAKNADIPELSVEYLETVLAKFRGDIVQIPPMYSALKH 130
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIERSLE-DRQNLIFRVTCSKGTYIRSLCADFG 488
G+ +Y AR G++IE+ PR I+I++ ++ LE + +L RV CSKGTYIRSL D G
Sbjct: 131 NGQPLYKLAREGKTIEVKPRNINIYELEL---LEFNTDSLKIRVKCSKGTYIRSLAIDIG 187
Query: 489 KALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
KALG HL AL+R G + + A + L++
Sbjct: 188 KALGCGGHLIALQRTQSGPFRIETALDLDNLKD 220
>gi|365862852|ref|ZP_09402583.1| tRNA pseudouridine synthase B [Streptomyces sp. W007]
gi|364007703|gb|EHM28712.1| tRNA pseudouridine synthase B [Streptomyces sp. W007]
Length = 299
Score = 164 bits (416), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 92/234 (39%), Positives = 129/234 (55%), Gaps = 11/234 (4%)
Query: 298 TELPPTWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVG 357
TE T DG +V+V+KP G+TS V K+R + + ++VGHAGTLDPMATG+L++ V
Sbjct: 2 TEQTTTPDG----LVIVDKPSGFTSHDVVAKMRGIARTRRVGHAGTLDPMATGVLVLGVQ 57
Query: 358 KATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEI 417
+ATKL+ K Y G RLG+ T T DA+ + + E I A+ G I
Sbjct: 58 RATKLLGHLALTEKEYLGTIRLGQDTVTDDAEGEITSSTDASGVTREGIDAGVAALTGRI 117
Query: 418 WQVPPMFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDI----ERSLEDRQ---NLIF 470
QVP SAIK+ G++ Y + R GE E+ R +++ F + E ED +L+
Sbjct: 118 MQVPSKVSAIKIDGKRSYARVRGGEEFEIPARPVTVSSFRVYDVREAVAEDGTPVLDLVV 177
Query: 471 RVTCSKGTYIRSLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAIT 524
V CS GTYIR++ D G LG HLTALRR +G Y D A + ++ +T
Sbjct: 178 SVVCSSGTYIRAIARDLGAGLGVGGHLTALRRTRVGPYGLDAARTLDQHQQELT 231
>gi|168491133|ref|ZP_02715276.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae CDC0288-04]
gi|418193825|ref|ZP_12830316.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA47439]
gi|183574402|gb|EDT94930.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae CDC0288-04]
gi|353859045|gb|EHE39000.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA47439]
Length = 292
Score = 164 bits (416), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 90/217 (41%), Positives = 127/217 (58%), Gaps = 4/217 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ + K G TS KLR+++ KK+GH GTLDP G+L + VGKAT++V+ Q
Sbjct: 4 IINLKKEAGMTSHDAVFKLRKILGTKKIGHGGTLDPDVVGVLPIAVGKATRMVEFMQDEG 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDED-IRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA VI P DE + +A AS G I Q+PPM+SA+KV
Sbjct: 64 KIYEGEITLGYSTTTEDASGEVIAETPVLSPLDEKLVDEAIASLTGPITQIPPMYSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIERSLE-DRQ--NLIFRVTCSKGTYIRSLCAD 486
G K+Y+ AR G+ +E R+++I+QF+ + D Q FRV CSKGTYIR+L D
Sbjct: 124 NGRKLYEYARAGQEVERPERQVTIYQFERTSPISYDGQLARFTFRVKCSKGTYIRTLSVD 183
Query: 487 FGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
G+ LG AH++ L R S +DA +E+ E +
Sbjct: 184 LGEKLGYAAHMSHLTRTSAAGLQLEDALTLEEIAEKV 220
>gi|302542137|ref|ZP_07294479.1| tRNA pseudouridine synthase B [Streptomyces hygroscopicus ATCC
53653]
gi|302459755|gb|EFL22848.1| tRNA pseudouridine synthase B [Streptomyces himastatinicus ATCC
53653]
Length = 306
Score = 164 bits (416), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 86/220 (39%), Positives = 123/220 (55%), Gaps = 7/220 (3%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G+TS V K+RR ++VGHAGTLDPMATG+L++ V KAT+L+
Sbjct: 15 LVIVDKPAGFTSHDVVAKMRRFAGTRRVGHAGTLDPMATGVLVIGVEKATRLLGHLALTE 74
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y+ RLG+ T T DA+ + + G+I QVP SAIK+
Sbjct: 75 KEYTATIRLGQTTVTDDAEGEITSSGGAAGTALSAVEAGIGELTGDIQQVPSKVSAIKID 134
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQ-------NLIFRVTCSKGTYIRSL 483
G++ Y +AR GE E+ R +++ F + S E + +L V CS GTYIR+L
Sbjct: 135 GKRSYTRAREGEEFEIPARPVTVSSFVLHESREAKAEDGTPVLDLDVTVVCSSGTYIRAL 194
Query: 484 CADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
D G LG+ HLTALRR +G Y + A ++LEE++
Sbjct: 195 ARDLGAGLGTGGHLTALRRTRVGPYGLEAARTLEQLEESL 234
>gi|50365098|ref|YP_053523.1| tRNA pseudouridine 5S synthase [Mesoplasma florum L1]
gi|54036465|sp|Q6F1I4.1|TRUB_MESFL RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|50363654|gb|AAT75639.1| tRNA pseudouridine 5S synthase [Mesoplasma florum L1]
Length = 286
Score = 164 bits (416), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 83/214 (38%), Positives = 132/214 (61%), Gaps = 5/214 (2%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++++NKPKG T+ + KL+R + VKK+GHAGTLDP+ATG++I + TKL D +
Sbjct: 6 IIILNKPKGLTTNHLIQKLKRKLNVKKIGHAGTLDPLATGVVICLINNGTKLSDYFLNEN 65
Query: 371 KGYSGVFRLGEATSTWDADSPVI-QREPWEHIKDEDIRKAAASFRGEIW-QVPPMFSAIK 428
K Y +L +AT T+D+D +I ++EP++ I+ E + K A F G + Q PPM+SAIK
Sbjct: 66 KAYEVTMKLFQATDTYDSDGSIIEEQEPFK-IEQEQVEKVIAKFNGLAYEQEPPMYSAIK 124
Query: 429 VGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFG 488
+ G+K+Y+ AR + ++++ R I I +++ + + V CSKGTYIRSL D
Sbjct: 125 IDGKKLYEYARENQVVKVNKRLIKINSLSLDKY--ENNEISMTVYCSKGTYIRSLIVDIA 182
Query: 489 KALGSCAHLTALRRDSIGQYSADDAWEFKELEEA 522
K L + AH+T+L R G + ++ + EE+
Sbjct: 183 KELNTIAHVTSLNRIESGNFIIKNSVNIENCEES 216
>gi|385838213|ref|YP_005875843.1| tRNA pseudouridine synthase B [Lactococcus lactis subsp. cremoris
A76]
gi|358749441|gb|AEU40420.1| tRNA pseudouridine synthase B [Lactococcus lactis subsp. cremoris
A76]
Length = 326
Score = 164 bits (416), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 85/214 (39%), Positives = 128/214 (59%), Gaps = 6/214 (2%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
V K GWTSF V KLR ++K KK+GH GTLDP TG+L + VGK+T+L++ + K Y
Sbjct: 7 VYKEAGWTSFDVVAKLRCILKTKKIGHGGTLDPSVTGVLPIAVGKSTRLLEYMEAAGKIY 66
Query: 374 SGVFRLGEATSTWDADSPVIQREPWE-HIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGE 432
G +G +T T DAD ++ + P + ++ + +I A + F G+I Q+PPM+SA+K+ G+
Sbjct: 67 EGQVTIGFSTETEDADGAIVNQTPVKNNLTESEIDSAMSRFVGKIKQIPPMYSAVKINGK 126
Query: 433 KMYDKARRGESIELSPRRISIFQFDIERSL-----EDRQNLIFRVTCSKGTYIRSLCADF 487
K+Y+ AR G++IE R I+I F + E F+V CSKGTYIR+L D
Sbjct: 127 KLYEYARAGQTIERPAREITIKSFVRTSPIDWNKEEGLVTFSFKVECSKGTYIRTLAVDL 186
Query: 488 GKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
+LG H++ L+R + DA + ++EE
Sbjct: 187 ADSLGYAGHMSKLQRTASNGLLIKDAIKLSKIEE 220
>gi|148993822|ref|ZP_01823224.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae SP9-BS68]
gi|148998642|ref|ZP_01826081.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae SP11-BS70]
gi|168489040|ref|ZP_02713239.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae SP195]
gi|168577208|ref|ZP_02723017.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae MLV-016]
gi|182684059|ref|YP_001835806.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae CGSP14]
gi|194398540|ref|YP_002037814.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae G54]
gi|307067861|ref|YP_003876827.1| pseudouridine synthase [Streptococcus pneumoniae AP200]
gi|417679172|ref|ZP_12328569.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA17570]
gi|417698614|ref|ZP_12347786.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA41317]
gi|418121252|ref|ZP_12758196.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA44194]
gi|418148612|ref|ZP_12785377.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA13856]
gi|418234410|ref|ZP_12860988.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA08780]
gi|419452980|ref|ZP_13992953.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae EU-NP03]
gi|419471136|ref|ZP_14010995.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA07914]
gi|419491099|ref|ZP_14030838.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA47179]
gi|419503991|ref|ZP_14043660.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA47760]
gi|419506126|ref|ZP_14045787.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA49194]
gi|419508281|ref|ZP_14047934.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA49542]
gi|419532405|ref|ZP_14071921.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA47794]
gi|421206677|ref|ZP_15663732.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae 2090008]
gi|421220365|ref|ZP_15677209.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae 2070425]
gi|421222674|ref|ZP_15679460.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae 2070531]
gi|421229851|ref|ZP_15686519.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae 2061376]
gi|421238823|ref|ZP_15695389.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae 2071247]
gi|421245099|ref|ZP_15701598.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae 2081685]
gi|421274931|ref|ZP_15725761.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA52612]
gi|421278989|ref|ZP_15729796.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA17301]
gi|421292128|ref|ZP_15742863.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA56348]
gi|421294046|ref|ZP_15744769.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA56113]
gi|421312060|ref|ZP_15762663.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA58981]
gi|421313819|ref|ZP_15764409.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA47562]
gi|147755479|gb|EDK62527.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae SP11-BS70]
gi|147927647|gb|EDK78672.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae SP9-BS68]
gi|182629393|gb|ACB90341.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae CGSP14]
gi|183572452|gb|EDT92980.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae SP195]
gi|183577206|gb|EDT97734.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae MLV-016]
gi|194358207|gb|ACF56655.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae G54]
gi|306409398|gb|ADM84825.1| Pseudouridine synthase [Streptococcus pneumoniae AP200]
gi|332073551|gb|EGI84030.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA17570]
gi|332200659|gb|EGJ14731.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA41317]
gi|353793154|gb|EHD73523.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA44194]
gi|353813287|gb|EHD93520.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA13856]
gi|353887701|gb|EHE67478.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA08780]
gi|379545852|gb|EHZ10991.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA07914]
gi|379593235|gb|EHZ58048.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA47179]
gi|379606189|gb|EHZ70938.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA47794]
gi|379606668|gb|EHZ71415.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA47760]
gi|379608040|gb|EHZ72786.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA49194]
gi|379611999|gb|EHZ76721.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA49542]
gi|379626689|gb|EHZ91305.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae EU-NP03]
gi|395575474|gb|EJG36042.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae 2090008]
gi|395587481|gb|EJG47828.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae 2070425]
gi|395587736|gb|EJG48078.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae 2070531]
gi|395595411|gb|EJG55643.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae 2061376]
gi|395601260|gb|EJG61408.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae 2071247]
gi|395608535|gb|EJG68628.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae 2081685]
gi|395874042|gb|EJG85130.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA52612]
gi|395879601|gb|EJG90658.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA17301]
gi|395892256|gb|EJH03247.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA56348]
gi|395894336|gb|EJH05316.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA56113]
gi|395910489|gb|EJH21361.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA58981]
gi|395914319|gb|EJH25163.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA47562]
Length = 292
Score = 164 bits (416), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 90/217 (41%), Positives = 127/217 (58%), Gaps = 4/217 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ + K G TS KLR+++ KK+GH GTLDP G+L + VGKAT++V+ Q
Sbjct: 4 IINLKKEAGMTSHDAVFKLRKILGTKKIGHGGTLDPDVVGVLPIAVGKATRMVEFMQDEG 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDED-IRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA VI P DE + +A AS G I Q+PPM+SA+KV
Sbjct: 64 KIYEGEITLGYSTTTEDASGEVIAETPVLSPLDEKLVDEAIASLTGPITQIPPMYSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIERSLE-DRQ--NLIFRVTCSKGTYIRSLCAD 486
G K+Y+ AR G+ +E R+++I+QF+ + D Q FRV CSKGTYIR+L D
Sbjct: 124 NGRKLYEYARAGQEVERPERQVTIYQFERTSPISYDGQLARFTFRVKCSKGTYIRTLSVD 183
Query: 487 FGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
G+ LG AH++ L R S +DA +E+ E +
Sbjct: 184 LGEKLGYAAHMSHLTRTSAAGLQLEDALALEEIAEKV 220
>gi|148985107|ref|ZP_01818346.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae SP3-BS71]
gi|387757548|ref|YP_006064527.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae OXC141]
gi|418232249|ref|ZP_12858836.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA07228]
gi|418236710|ref|ZP_12863278.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA19690]
gi|419480097|ref|ZP_14019903.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA19101]
gi|419499792|ref|ZP_14039486.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA47597]
gi|147922552|gb|EDK73670.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae SP3-BS71]
gi|301800137|emb|CBW32741.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae OXC141]
gi|353886976|gb|EHE66756.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA07228]
gi|353892942|gb|EHE72690.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA19690]
gi|379570668|gb|EHZ35629.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA19101]
gi|379599100|gb|EHZ63883.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA47597]
gi|429316174|emb|CCP35842.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae SPN034156]
gi|429319516|emb|CCP32795.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae SPN034183]
gi|429321333|emb|CCP34769.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae SPN994039]
gi|429323153|emb|CCP30810.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae SPN994038]
Length = 292
Score = 164 bits (416), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 89/217 (41%), Positives = 127/217 (58%), Gaps = 4/217 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ + K G TS KLR+++ KK+GH GTLDP G+L + VGKAT++V+ Q
Sbjct: 4 IINLKKEAGMTSHDAVFKLRKILGTKKIGHGGTLDPDVVGVLPIAVGKATRMVEFMQDEG 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDED-IRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V+ P DE + +A AS G I Q+PPM+SA+KV
Sbjct: 64 KIYEGEITLGYSTTTEDASGEVVAETPVLSPLDEKLVDEAIASLTGPITQIPPMYSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIERSLE-DRQ--NLIFRVTCSKGTYIRSLCAD 486
G K+Y+ AR G+ +E R+++I+QF+ + D Q FRV CSKGTYIR+L D
Sbjct: 124 NGRKLYEYARAGQEVERPERQVTIYQFERTSPISYDGQLARFTFRVKCSKGTYIRTLSVD 183
Query: 487 FGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
G+ LG AH++ L R S +DA +E+ E +
Sbjct: 184 LGEKLGYAAHMSHLTRTSAADLQLEDALALEEIAEKV 220
>gi|182435601|ref|YP_001823320.1| tRNA pseudouridine synthase B [Streptomyces griseus subsp. griseus
NBRC 13350]
gi|326776235|ref|ZP_08235500.1| tRNA pseudouridine synthase B [Streptomyces griseus XylebKG-1]
gi|226708673|sp|B1VYN2.1|TRUB_STRGG RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|178464117|dbj|BAG18637.1| putative tRNA pseudouridine synthase [Streptomyces griseus subsp.
griseus NBRC 13350]
gi|326656568|gb|EGE41414.1| tRNA pseudouridine synthase B [Streptomyces griseus XylebKG-1]
Length = 299
Score = 164 bits (416), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 93/234 (39%), Positives = 128/234 (54%), Gaps = 11/234 (4%)
Query: 298 TELPPTWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVG 357
TE T DG +V+V+KP G+TS V K+R + + ++VGHAGTLDPMATG+L++ V
Sbjct: 2 TEQTTTPDG----LVIVDKPSGFTSHDVVAKMRGIARTRRVGHAGTLDPMATGVLVLGVQ 57
Query: 358 KATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEI 417
+ATKL+ K Y G RLG+ T T DA+ + + I A+ G I
Sbjct: 58 RATKLLGHLALTEKEYLGTIRLGQDTVTDDAEGEITSSTDASGVTRASIDAGVAALTGRI 117
Query: 418 WQVPPMFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDI----ERSLEDRQ---NLIF 470
QVP SAIK+ G++ Y + R GE E+ R ++I F + E ED +L+
Sbjct: 118 MQVPSKVSAIKIDGKRSYARVRGGEEFEIPARPVTISSFRVYDVREAVAEDGTPVLDLVV 177
Query: 471 RVTCSKGTYIRSLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAIT 524
V CS GTYIR++ D G LG HLTALRR +G Y D A + +E +T
Sbjct: 178 SVVCSSGTYIRAIARDLGAGLGVGGHLTALRRTRVGPYGLDAARTLDQHQEELT 231
>gi|337290989|ref|YP_004630010.1| tRNA pseudouridine synthase B [Corynebacterium ulcerans BR-AD22]
gi|397654249|ref|YP_006494932.1| tRNA pseudouridine synthase B [Corynebacterium ulcerans 0102]
gi|334699295|gb|AEG84091.1| tRNA pseudouridine synthase B [Corynebacterium ulcerans BR-AD22]
gi|393403205|dbj|BAM27697.1| tRNA pseudouridine synthase B [Corynebacterium ulcerans 0102]
Length = 304
Score = 164 bits (416), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 93/230 (40%), Positives = 130/230 (56%), Gaps = 18/230 (7%)
Query: 307 PFGT--MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVD 364
P T +V+V+KP G TS V G+LRR+ K+VGHAGTLDPMATG+L+V + + TK +
Sbjct: 4 PLSTSGLVVVDKPAGMTSHDVVGRLRRIFGTKRVGHAGTLDPMATGVLVVGIERGTKFLA 63
Query: 365 RYQGMIKGYSGVFRLGEATSTWD--------ADSPVIQREPWEHIKDEDIRKAAASFRGE 416
K Y RLG +T+T D AD+ + I D++I A G
Sbjct: 64 HMVASTKSYRATIRLGMSTTTDDKEGEAVFAADTSTVS----AMITDDEIAAEIAKLTGN 119
Query: 417 IWQVPPMFSAIKVGGEKMYDKARRGESIELSPRRISIFQF---DIERSLE-DRQNLIFRV 472
I Q P SAIK+ G++ + R G+ +E+ R ++I++F DI R+L + ++ V
Sbjct: 120 IMQRPASVSAIKINGKRAHQMVREGQEVEIPARPVTIYRFDVLDISRALSPEFIDIDVEV 179
Query: 473 TCSKGTYIRSLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEA 522
TCS GTYIRSL D G+AL HLTALRR S+G ++ DA +L A
Sbjct: 180 TCSSGTYIRSLARDLGEALHVGGHLTALRRLSVGPFTLSDAITLDDLATA 229
>gi|383939658|ref|ZP_09992812.1| tRNA pseudouridine(55) synthase [Streptococcus pseudopneumoniae
SK674]
gi|383712494|gb|EID69546.1| tRNA pseudouridine(55) synthase [Streptococcus pseudopneumoniae
SK674]
Length = 292
Score = 164 bits (416), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 89/217 (41%), Positives = 127/217 (58%), Gaps = 4/217 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ + K G TS KLR+++ KK+GH GTLDP G+L + VGKAT++V+ Q
Sbjct: 4 IINLKKEAGMTSHDAVFKLRKILGTKKIGHGGTLDPDVVGVLPIAVGKATRMVEFMQDEG 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDED-IRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V+ P DE + +A AS G I Q+PPM+SA+KV
Sbjct: 64 KVYEGEITLGYSTTTEDASGEVVAETPVLSQLDEKLVDEAIASLTGPITQIPPMYSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIERSLE-DRQ--NLIFRVTCSKGTYIRSLCAD 486
G K+Y+ AR G+ +E R+++I+QF+ + D Q FRV CSKGTYIR+L D
Sbjct: 124 NGRKLYEYARAGQEVERPERQVTIYQFERTSPISYDGQLARFTFRVKCSKGTYIRTLSVD 183
Query: 487 FGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
G+ LG AH++ L R S +DA +E+ E +
Sbjct: 184 LGEKLGYAAHMSQLTRTSAAGLQLEDALTLEEIAEKV 220
>gi|359768072|ref|ZP_09271852.1| tRNA pseudouridine synthase B [Gordonia polyisoprenivorans NBRC
16320]
gi|359314649|dbj|GAB24685.1| tRNA pseudouridine synthase B [Gordonia polyisoprenivorans NBRC
16320]
Length = 305
Score = 164 bits (416), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 92/219 (42%), Positives = 126/219 (57%), Gaps = 8/219 (3%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+K G TS V + R++ ++VGHAGTLDPMATG+L++ V +ATKL+
Sbjct: 11 LVIVDKAAGITSHDVVSRCRKIFNTRRVGHAGTLDPMATGVLVIGVERATKLLGLLSLTT 70
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y+ RLG AT T D + +I R I D++I +A A G+I QVP SAIKV
Sbjct: 71 KSYTATIRLGAATDTDDREGRIISRGAVSAICDDEITRAVADLTGDISQVPAKVSAIKVD 130
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIE--RSLEDRQ------NLIFRVTCSKGTYIRS 482
G + + AR G +L+ R + + +F+I R ED +L V CS GTYIRS
Sbjct: 131 GRRAHALARTGAEFDLAARPVRVSRFEIRAIRRPEDDGGEAGFLDLDVEVDCSAGTYIRS 190
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
L D G ALGS HLTALRR ++G ++ + A L E
Sbjct: 191 LARDLGDALGSGGHLTALRRTAVGPFTLEHARTLDVLAE 229
>gi|421527016|ref|ZP_15973621.1| tRNA pseudouridine synthase B [Fusobacterium nucleatum ChDC F128]
gi|402256745|gb|EJU07222.1| tRNA pseudouridine synthase B [Fusobacterium nucleatum ChDC F128]
Length = 287
Score = 164 bits (416), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 91/218 (41%), Positives = 139/218 (63%), Gaps = 3/218 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++++NKPKG TSF V KL++++K KK+GH GTLDP+ATG++++CVGKATKL +
Sbjct: 4 IIVINKPKGITSFDVIRKLKKILKTKKIGHTGTLDPLATGVMLMCVGKATKLASDLEAKD 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y F +G AT T+D + I E I E++ ++ F G I QVPPM+SAIK+
Sbjct: 64 KVYIADFDIGYATDTYDIEGKKIAENIIE-ISKENLEQSIKKFIGNIKQVPPMYSAIKID 122
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKA 490
G K+Y AR+G +E R ++I ++ +++ + +V SKG YIRSL D G+
Sbjct: 123 GNKLYHLARKGIEVERPERDVTIEYINLLDFKDNKAKIETKV--SKGCYIRSLIYDIGQD 180
Query: 491 LGSCAHLTALRRDSIGQYSADDAWEFKELEEAITKNYF 528
LG+ A +TAL+R +G YS +D++ +++EE + N F
Sbjct: 181 LGTYATMTALQRKQVGDYSLEDSYSLEQIEEMVLNNDF 218
>gi|312869014|ref|ZP_07729191.1| tRNA pseudouridine synthase B [Lactobacillus oris PB013-T2-3]
gi|311095440|gb|EFQ53707.1| tRNA pseudouridine synthase B [Lactobacillus oris PB013-T2-3]
Length = 299
Score = 164 bits (416), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 84/218 (38%), Positives = 130/218 (59%), Gaps = 5/218 (2%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ + K +G TSF +LRR++K +K+GH+GTLDP G+L +CVG ATK V+
Sbjct: 4 IIPLYKERGMTSFDCVSRLRRILKTRKIGHSGTLDPSVDGVLPICVGTATKAVEYLMQSG 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWE-HIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G +G AT T D D VI++ P + I DE + A GEI QVPPM+SA+KV
Sbjct: 64 KVYQGELVIGRATETEDFDGQVIEQAPVKAAISDEAVTAAMTKLTGEITQVPPMYSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIERSLEDR----QNLIFRVTCSKGTYIRSLCA 485
G+++Y+ AR GE+++ R ++I F + R+ D+ Q++ F+V CSKGTY+R+L
Sbjct: 124 NGKRLYEYARAGETVDRPTRHVTITDFTLIRNHYDQAQQEQHVFFKVACSKGTYVRTLVV 183
Query: 486 DFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
D + LG + L R G ++ D ++++A+
Sbjct: 184 DLARQLGYPGAMKWLTRLESGGFTIDQTLSLADVQDAM 221
>gi|373500673|ref|ZP_09591048.1| tRNA pseudouridine synthase B [Prevotella micans F0438]
gi|371952473|gb|EHO70311.1| tRNA pseudouridine synthase B [Prevotella micans F0438]
Length = 234
Score = 164 bits (415), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 84/218 (38%), Positives = 125/218 (57%), Gaps = 5/218 (2%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVK-----KVGHAGTLDPMATGLLIVCVGKATKLV 363
G ++ ++KP +SF +R L K+GHAGTLDP+ATG+L++ GK TK +
Sbjct: 6 GVLIPIDKPYSVSSFKALAHIRYLCTQANNGKVKMGHAGTLDPLATGVLVLVTGKMTKQI 65
Query: 364 DRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPM 423
+ Q K Y +LG T ++D + V + P EHI + I + F G I Q+PP
Sbjct: 66 ETLQAHTKEYVATLQLGATTPSYDMEHEVNETFPTEHITRQLIEETIPQFVGNIQQIPPT 125
Query: 424 FSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSL 483
+SA+KV G++ +D R+G+ ++LS + I I + +I + E L RV C KGTYIR+L
Sbjct: 126 YSAVKVNGKRAFDYRRKGKDVQLSAKNIRIDEIEIIQFDETTMQLSLRVVCGKGTYIRAL 185
Query: 484 CADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
D G+AL S A+LTALRR G S ++ ++ EE
Sbjct: 186 ARDIGRALESGAYLTALRRTRSGNISIENCISYERFEE 223
>gi|417971632|ref|ZP_12612555.1| tRNA pseudouridine synthase B [Corynebacterium glutamicum S9114]
gi|344044114|gb|EGV39795.1| tRNA pseudouridine synthase B [Corynebacterium glutamicum S9114]
Length = 297
Score = 164 bits (415), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 89/229 (38%), Positives = 128/229 (55%), Gaps = 12/229 (5%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G TS V KLRR +KVGHAGTLDPMATG+L+V + + T+ +
Sbjct: 10 LVIVDKPAGMTSHDVVSKLRRAFSTRKVGHAGTLDPMATGVLVVGIERGTRFLAHMVAST 69
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y RLG ATST DA+ VI + I + G+I Q P SAIK+
Sbjct: 70 KAYDATIRLGAATSTDDAEGEVIFTTDASGLDHSTILTEIVNLTGDIMQKPTKVSAIKID 129
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQ--NLIFRVTCSKGTYIRSLCADFG 488
G++ +++ R GE +++ R +++ FD+ D + +L RV CS GTYIR+L D G
Sbjct: 130 GKRAHERVRDGEEVDIPARPVTVSVFDVLDYRVDGEFYDLDVRVHCSSGTYIRALARDLG 189
Query: 489 KALGSCAHLTALRRDSIGQYSADDAWEFKELEE----------AITKNY 527
AL HLTALRR +G ++ +DA +L+E A+T++Y
Sbjct: 190 NALQVGGHLTALRRTEVGPFTLNDATPLSKLQENPELSLNLDQALTRSY 238
>gi|111225115|ref|YP_715909.1| tRNA pseudouridine synthase B [Frankia alni ACN14a]
gi|111152647|emb|CAJ64388.1| tRNA pseudouridine synthase B (tRNA pseudouridine 55 synthase)
(Psi55 synthase) (Pseudouridylate synthase) (Uracil
hydrolyase) [Frankia alni ACN14a]
Length = 307
Score = 164 bits (415), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 91/227 (40%), Positives = 131/227 (57%), Gaps = 12/227 (5%)
Query: 302 PTWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATK 361
P DG +V+V+KP G TS V + RR++ ++VGHAGTLDPMATG+L++ G+AT+
Sbjct: 12 PQVDG----LVVVDKPPGLTSHDVVARARRILGQRRVGHAGTLDPMATGVLLLGAGRATR 67
Query: 362 LVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVP 421
L+ K Y RLG T+T DA+ ++ P + + + +A A+ G I QVP
Sbjct: 68 LLGHLALTDKVYDATIRLGRTTTTDDAEGEPLEDRPVD-VAPARLAEAMAALTGTIDQVP 126
Query: 422 PMFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDI------ERSLEDRQ-NLIFRVTC 474
SA+KVGG + Y + R GE +EL+ RR+++ +FD+ + + + R +L V C
Sbjct: 127 SSVSAVKVGGVRAYARVRAGEQVELAARRVTVHRFDLVARRDADGAADQRGCDLDVTVGC 186
Query: 475 SKGTYIRSLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
S GTYIR+L D G ALG HLTALRR +G + D A E
Sbjct: 187 SSGTYIRALARDLGAALGCGGHLTALRRTVVGPFGLDRAVSLDTFAE 233
>gi|163119441|ref|YP_079064.2| tRNA pseudouridine synthase B [Bacillus licheniformis DSM 13 = ATCC
14580]
gi|319645947|ref|ZP_08000177.1| tRNA pseudouridine synthase B [Bacillus sp. BT1B_CT2]
gi|404489161|ref|YP_006713267.1| tRNA pseudouridine synthase B [Bacillus licheniformis DSM 13 = ATCC
14580]
gi|423682215|ref|ZP_17657054.1| tRNA pseudouridine synthetase B [Bacillus licheniformis WX-02]
gi|62901268|sp|Q65JH8.1|TRUB_BACLD RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|52348152|gb|AAU40786.1| tRNA pseudouridine synthase TruB [Bacillus licheniformis DSM 13 =
ATCC 14580]
gi|145902948|gb|AAU23426.2| tRNA pseudouridine 55 synthase [Bacillus licheniformis DSM 13 =
ATCC 14580]
gi|317391697|gb|EFV72494.1| tRNA pseudouridine synthase B [Bacillus sp. BT1B_CT2]
gi|383438989|gb|EID46764.1| tRNA pseudouridine synthetase B [Bacillus licheniformis WX-02]
Length = 309
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 87/220 (39%), Positives = 130/220 (59%), Gaps = 4/220 (1%)
Query: 308 FGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQ 367
+ ++L++KP G TS K+R+L+K KKVGH GTLDP +G+L +CVG+ATK+V+
Sbjct: 2 YNGVLLLHKPVGMTSHDCVMKIRKLLKTKKVGHTGTLDPEVSGVLPICVGRATKIVEYLT 61
Query: 368 GMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDED-IRKAAASFRGEIWQVPPMFSA 426
K Y LG +T T D V +++P DE ++ S G I QVPPM+SA
Sbjct: 62 EKSKTYDAEVTLGCSTETEDQTGEVTEKKPVLAPPDEQTVQSVLRSLEGTIEQVPPMYSA 121
Query: 427 IKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLE---DRQNLIFRVTCSKGTYIRSL 483
+KVGG+K+Y+ AR G +E R I+I ++ + D+ F VTCSKGTY+R+L
Sbjct: 122 VKVGGKKLYEYARAGIEVERPKRTITIHHIELTSEIRHEGDKARFRFVVTCSKGTYVRTL 181
Query: 484 CADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
G+ LG AH++ L R + G ++ D+ F+++E I
Sbjct: 182 AVTIGEKLGYPAHMSNLVRTASGPFTLDECLTFEDVEGLI 221
>gi|383823846|ref|ZP_09979034.1| tRNA pseudouridine synthase B [Mycobacterium xenopi RIVM700367]
gi|383338282|gb|EID16647.1| tRNA pseudouridine synthase B [Mycobacterium xenopi RIVM700367]
Length = 292
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 88/213 (41%), Positives = 128/213 (60%), Gaps = 2/213 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP TS V + RR+ +KVGHAGTLDPMATG+L++ + +ATK++ G
Sbjct: 5 IVVVDKPAAMTSHDVVARCRRIFATRKVGHAGTLDPMATGVLVIGIERATKILGLLSGAS 64
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y+ RLG+ATST D++ ++Q+ EH+ D I A GEI QVP SA+K+G
Sbjct: 65 KSYAATIRLGQATSTDDSEGELLQQVSAEHLSDAAIAAAMGRLCGEISQVPSAVSAVKIG 124
Query: 431 GEKMYDKARRGESIELSPRRISIFQFD--IERSLEDRQNLIFRVTCSKGTYIRSLCADFG 488
G + Y AR G++++L R + + +F+ R + ++ V CS GTYIR+L D G
Sbjct: 125 GRRAYRLAREGQTVQLQARPVRVDRFEPLAVRHHGELVDIDVEVDCSSGTYIRALARDLG 184
Query: 489 KALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
LG HLTALRR +G++ + A EL E
Sbjct: 185 DGLGVGGHLTALRRTRVGRFGIEQAVTLDELAE 217
>gi|269795637|ref|YP_003315092.1| tRNA pseudouridine synthase B [Sanguibacter keddieii DSM 10542]
gi|269097822|gb|ACZ22258.1| tRNA pseudouridine synthase B [Sanguibacter keddieii DSM 10542]
Length = 343
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 93/228 (40%), Positives = 124/228 (54%), Gaps = 18/228 (7%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+VLV+KP GWTS V + R L +KVGHAGTLDPMATG+L++ VG+AT+L+ G
Sbjct: 29 LVLVDKPAGWTSHDVVARTRGLAGTRKVGHAGTLDPMATGVLVLGVGRATRLLTYVVGTD 88
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y+ RLG+AT+T DA+ ++ + + + A GEI QVP SAIKV
Sbjct: 89 KEYTATIRLGQATTTDDAEGEMLTTPGAAGVAADAVAAGIARLTGEIQQVPSSVSAIKVD 148
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNL------------------IFRV 472
G++ Y R G + L R ++I +FD+ E + V
Sbjct: 149 GKRAYALVRSGADVALDARTVTISRFDVHAVREVEVTVEGDSEAGTATTTTTVLDVDVTV 208
Query: 473 TCSKGTYIRSLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELE 520
CS GTYIR+L D G LG HLTALRR +G Y+ D A F+ELE
Sbjct: 209 VCSSGTYIRALARDLGADLGVGGHLTALRRTRVGGYTLDAARSFEELE 256
>gi|225181388|ref|ZP_03734832.1| tRNA pseudouridine synthase B [Dethiobacter alkaliphilus AHT 1]
gi|225167969|gb|EEG76776.1| tRNA pseudouridine synthase B [Dethiobacter alkaliphilus AHT 1]
Length = 294
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 77/209 (36%), Positives = 128/209 (61%), Gaps = 2/209 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ + KP G TS V LRRL ++++GH GTLDP A G+L VC+G+AT++ + M
Sbjct: 4 IINILKPPGMTSHNVVSFLRRLSSMRRIGHTGTLDPGAAGVLPVCLGQATRVSEYVLHMD 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y LG++T T DA ++ + + ++I K +SF G+ Q+PPM+SA+KVG
Sbjct: 64 KVYRAELTLGKSTDTEDASGTMVAEQAVPVLNKQEITKVLSSFVGQQTQIPPMYSAVKVG 123
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKA 490
G+K+Y+ AR+G ++ R I ++ + + D+Q + F V CS+GTY+R+LC + +
Sbjct: 124 GKKLYELARQGGEVDRKAREIHVYSMKLLQV--DKQKITFDVACSRGTYVRTLCREIAEK 181
Query: 491 LGSCAHLTALRRDSIGQYSADDAWEFKEL 519
LG+ H++ L R +G + D++ +EL
Sbjct: 182 LGTVGHMSFLLRTGVGPFLLQDSFTLEEL 210
>gi|422575348|ref|ZP_16650889.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL001PA1]
gi|314923884|gb|EFS87715.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL001PA1]
Length = 295
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 125/217 (57%), Gaps = 4/217 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++V+KP G TS V G++RRL+ +KVGHAGTLDPMA+G+L+V V +AT+L+
Sbjct: 8 VLVVDKPAGVTSHQVVGRVRRLMGTRKVGHAGTLDPMASGVLVVGVNRATRLLGHLSLHD 67
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y+ RLG T T DA+ V I+D I A A GEI QVP SAIKV
Sbjct: 68 KDYTATMRLGVGTVTDDAEGDVTVTTDASAIEDRAIHAAMARQTGEIQQVPAAVSAIKVN 127
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLI---FRVTCSKGTYIRSLCADF 487
G + Y K R GE + L PR +++ +F+ ++ +I VTCS GTY+R+L D
Sbjct: 128 GRRAYAKVRAGEDVVLRPRTVTVSRFE-AIAIRRHGQVIDADVEVTCSSGTYVRALARDI 186
Query: 488 GKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAIT 524
G LG HLTALRR +G + A ++A+T
Sbjct: 187 GADLGVGGHLTALRRTRVGPFDLTAACVDVFAQDAVT 223
>gi|452957661|gb|EME63025.1| tRNA pseudouridine synthase B [Amycolatopsis decaplanina DSM 44594]
Length = 307
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 87/216 (40%), Positives = 126/216 (58%), Gaps = 5/216 (2%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G TS V + RR + +KVGHAGTLDPMATG+L++ + +ATKL+
Sbjct: 19 LVIVDKPSGMTSHDVVARARRFMGTRKVGHAGTLDPMATGVLVLGIERATKLLGHLALDR 78
Query: 371 KGYSGVFRLGEATSTWDADS-PVIQREP--WEHIKDEDIRKAAASFRGEIWQVPPMFSAI 427
K Y LG +T+T DA+ P+ + P E I DE I A+ G+I QVP SA+
Sbjct: 79 KTYLATLSLGLSTTTDDAEGEPIAEAAPDAVEKITDEAIAAGIAALTGDIQQVPSAVSAV 138
Query: 428 KVGGEKMYDKARRGESIELSPRRISIFQFDI--ERSLEDRQNLIFRVTCSKGTYIRSLCA 485
K+ G++ Y + R GE + + PR +++ +FD+ R R L V CS GTY+R+L
Sbjct: 139 KIDGKRAYARVRAGEEVVIPPRPVTVHRFDLLATRREAGRIELDAVVECSSGTYVRALAR 198
Query: 486 DFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
D G LG HL ALRR ++G ++ A +LE+
Sbjct: 199 DLGAGLGVGGHLLALRRTTVGPFTLAKARTLDQLED 234
>gi|359422722|ref|ZP_09213871.1| tRNA pseudouridine synthase B [Gordonia amarae NBRC 15530]
gi|358241994|dbj|GAB03453.1| tRNA pseudouridine synthase B [Gordonia amarae NBRC 15530]
Length = 300
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 81/214 (37%), Positives = 122/214 (57%), Gaps = 3/214 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++V+K G TS V + R++ ++VGHAGTLDPMATG+L++ + +ATKL+
Sbjct: 11 LLIVDKEAGMTSHDVVSRCRKIFNTRRVGHAGTLDPMATGVLVIGIERATKLLGLLSLTT 70
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y RLG +T+T D + +++ + D+ IR A+ G+I Q+P SAIKV
Sbjct: 71 KAYEATIRLGASTTTDDREGEILESTDASEVSDDAIRSGIAALTGDIQQIPAKVSAIKVD 130
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLI---FRVTCSKGTYIRSLCADF 487
G + + R G+ +L R +++ +FDI D + V CS GTYIRSL D
Sbjct: 131 GRRAHALVRGGKEFDLEARPVTVSRFDIHHIRRDEPGFVDLDVTVECSAGTYIRSLARDL 190
Query: 488 GKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
G ALG HLTALRR ++G ++ D A E+ +
Sbjct: 191 GSALGVGGHLTALRRTAVGPFTLDHALTLDEVRD 224
>gi|336400791|ref|ZP_08581564.1| tRNA pseudouridine synthase B [Fusobacterium sp. 21_1A]
gi|336161816|gb|EGN64807.1| tRNA pseudouridine synthase B [Fusobacterium sp. 21_1A]
Length = 287
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 90/219 (41%), Positives = 137/219 (62%), Gaps = 5/219 (2%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++VNKPKG TSF V KL++ +K KK+GH GTLDP+ATG+++VCVG+ATKL +
Sbjct: 4 IIVVNKPKGITSFDVIRKLKKNLKTKKIGHTGTLDPLATGIMLVCVGRATKLASDLEAKD 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y F +G AT T+D + I E + E++ ++ F G I Q+PPM+SAIK+
Sbjct: 64 KIYIADFDIGYATDTYDIEGKKIAENIIE-VSKENLEQSIKKFIGNIKQIPPMYSAIKID 122
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLI-FRVTCSKGTYIRSLCADFGK 489
G K+Y AR+G +E R ++I ++ L+ + N + SKG YIRSL D G+
Sbjct: 123 GNKLYHLARKGIEVERPERNVTIEYINL---LDFKDNKVKIETKVSKGCYIRSLIYDIGQ 179
Query: 490 ALGSCAHLTALRRDSIGQYSADDAWEFKELEEAITKNYF 528
LGS A +TAL+R +G YS ++++ +++E+ + N F
Sbjct: 180 DLGSYATMTALQRKQVGDYSLENSYSLEQIEKMVLNNDF 218
>gi|222153119|ref|YP_002562296.1| tRNA pseudouridine synthase B [Streptococcus uberis 0140J]
gi|222113932|emb|CAR42161.1| tRNA pseudouridine synthase B [Streptococcus uberis 0140J]
Length = 300
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 83/215 (38%), Positives = 129/215 (60%), Gaps = 4/215 (1%)
Query: 316 KPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSG 375
K G TS KLRRL+ KK+GH GTLDP +G+L + VGKAT++++ K Y G
Sbjct: 10 KEAGMTSHDAVFKLRRLLHEKKIGHGGTLDPDVSGVLPIAVGKATRVIEYMTNAGKVYEG 69
Query: 376 VFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEKM 434
LG +T+T D+ ++ R P + + ++ A SF G+I Q+PPM+SA+KV G K+
Sbjct: 70 TVTLGYSTTTEDSSGDIVLRTPVNRPLSEAEVDFAMKSFEGDIEQIPPMYSAVKVNGRKL 129
Query: 435 YDKARRGESIELSPRRISIFQFDIERSLEDRQNLI---FRVTCSKGTYIRSLCADFGKAL 491
Y+ AR G+++E R++ I QF L + NL F+V CSKGTY+R+L + G+ L
Sbjct: 130 YEYARAGQTVERPVRKVRIEQFIRTSDLTFKDNLCTFDFKVICSKGTYVRTLAVNLGEKL 189
Query: 492 GSCAHLTALRRDSIGQYSADDAWEFKELEEAITKN 526
G +H++ LRR + + D ++ E+E I+++
Sbjct: 190 GFASHMSYLRRTASAGLTIDKSYTLNEIETLISQD 224
>gi|453049548|gb|EME97135.1| tRNA pseudouridine synthase B [Streptomyces mobaraensis NBRC 13819
= DSM 40847]
Length = 301
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 90/228 (39%), Positives = 125/228 (54%), Gaps = 11/228 (4%)
Query: 301 PPTWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKAT 360
PP DG +V+V+KP G+TS V K+R + K ++VGHAGTLDPMATG+L++ V +AT
Sbjct: 6 PPGPDG----LVIVDKPAGFTSHDVVAKMRGMAKTRRVGHAGTLDPMATGVLVLGVERAT 61
Query: 361 KLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQV 420
KL+ K Y RLG+ T T DA+ + + E I A G I QV
Sbjct: 62 KLLGHLALTEKEYVATIRLGQNTVTDDAEGEITSSADASGVTREAIDAGVAKLTGAIMQV 121
Query: 421 PPMFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIE----RSLEDR---QNLIFRVT 473
P SAIK+ G++ Y +AR GE E+ R +++ F + ED Q+++ V
Sbjct: 122 PSKVSAIKIDGKRSYKRAREGEDFEIPARPVTVSSFTVHAVHPAEAEDGTPVQDVLVSVV 181
Query: 474 CSKGTYIRSLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
CS GTY+R+L D G G HLTALRR +G Y +A +L+E
Sbjct: 182 CSSGTYVRALARDLGADTGVGGHLTALRRTRVGPYGISEARTLDQLQE 229
>gi|433463503|ref|ZP_20421056.1| tRNA pseudouridine 55 synthase [Halobacillus sp. BAB-2008]
gi|432187503|gb|ELK44788.1| tRNA pseudouridine 55 synthase [Halobacillus sp. BAB-2008]
Length = 298
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 90/212 (42%), Positives = 123/212 (58%), Gaps = 5/212 (2%)
Query: 316 KPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSG 375
KPKG+TS K R ++++KK+GH GTLDP G+L +CVGKATK+V K Y
Sbjct: 9 KPKGFTSHDCVSKARGMLRMKKIGHTGTLDPDVEGVLPLCVGKATKIVPFLTDTDKVYEA 68
Query: 376 VFRLGEATSTWDADSPVIQREPWEHIKDE-DIRKAAASFRGEIWQVPPMFSAIKVGGEKM 434
V LG +T T DA ++ + D+ I++ SF G I Q PPM+SA+KV G ++
Sbjct: 69 VVTLGYSTDTEDAGGNQVETLSVDKPVDKTQIKETLRSFEGRITQTPPMYSAVKVNGRRL 128
Query: 435 YDKARRGESIELSPRRISIFQFDIERSLEDRQN----LIFRVTCSKGTYIRSLCADFGKA 490
Y+ AR G+ IE R ++I + + E QN FR CSKGTYIR+LC D GKA
Sbjct: 129 YEYAREGKVIERPTRHVTIKEIALTSVDESVQNGTFSFSFRAVCSKGTYIRTLCVDIGKA 188
Query: 491 LGSCAHLTALRRDSIGQYSADDAWEFKELEEA 522
LG AH+++L R G D + F +L+EA
Sbjct: 189 LGFPAHMSSLVRTKTGGIEKGDCYTFDQLQEA 220
>gi|417686688|ref|ZP_12335964.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA41301]
gi|418076355|ref|ZP_12713591.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA47502]
gi|419521175|ref|ZP_14060770.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA05245]
gi|332074824|gb|EGI85296.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA41301]
gi|353749056|gb|EHD29706.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA47502]
gi|379538475|gb|EHZ03655.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA05245]
Length = 292
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 90/217 (41%), Positives = 127/217 (58%), Gaps = 4/217 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ + K G TS KLR+++ KK+GH GTLDP G+L + VGKAT++V+ Q
Sbjct: 4 IINLKKEAGMTSHDAVFKLRKILGTKKIGHGGTLDPDVVGVLPIAVGKATRMVEFMQDEG 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDED-IRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA VI P DE + +A AS G I Q+PPM+SA+KV
Sbjct: 64 KIYEGEITLGYSTTTEDASGEVIAETPVLSPLDEKLVDEAIASLTGPITQIPPMYSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIERSLE-DRQ--NLIFRVTCSKGTYIRSLCAD 486
G K+Y+ AR G+ +E R+++I+QF+ + D Q FRV CSKGTYIR+L D
Sbjct: 124 NGRKLYEYARAGQEVERPERQVTIYQFERTSPISYDGQLARFTFRVKCSKGTYIRTLSVD 183
Query: 487 FGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
G+ LG AH++ L R S +DA +E+ E +
Sbjct: 184 LGEKLGYTAHMSHLTRTSAAGLQLEDALALEEIAEKV 220
>gi|405980465|ref|ZP_11038804.1| tRNA pseudouridine synthase B [Actinomyces turicensis
ACS-279-V-Col4]
gi|404390458|gb|EJZ85527.1| tRNA pseudouridine synthase B [Actinomyces turicensis
ACS-279-V-Col4]
Length = 342
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 93/234 (39%), Positives = 123/234 (52%), Gaps = 26/234 (11%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+++KP G TS V K+RR+ +KVGH GTLDPMATG+L++ +G+AT+L+
Sbjct: 12 IVIIDKPAGMTSHDVVSKMRRVAHTRKVGHGGTLDPMATGVLVIGIGQATRLLTYITAGS 71
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y R G A +T DA I E + E + A AS RGEI QVP SAIKV
Sbjct: 72 KAYDATIRFGVAMTTDDAQGQPISIAGCEQLDREALESAMASLRGEIMQVPATVSAIKVD 131
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLI--------------------- 469
G++ Y AR G S+EL R I+I F ER + R +
Sbjct: 132 GKRAYALAREGRSVELKARPITIHAF--ERLGDPRIQMAEYAIATDDDSAEMTAIPVSVV 189
Query: 470 ---FRVTCSKGTYIRSLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELE 520
V CS GTYIRSL D G+ LG AHLTALRR + ++ A + +L+
Sbjct: 190 DVDVHVDCSSGTYIRSLARDLGQMLGCGAHLTALRRTRVASFTLSGAHQLADLQ 243
>gi|326382951|ref|ZP_08204641.1| tRNA pseudouridine synthase B [Gordonia neofelifaecis NRRL B-59395]
gi|326198541|gb|EGD55725.1| tRNA pseudouridine synthase B [Gordonia neofelifaecis NRRL B-59395]
Length = 299
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 85/213 (39%), Positives = 125/213 (58%), Gaps = 2/213 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++V+K TS V K R+ ++VGHAGTLDPMATG+L++ + +ATKL+
Sbjct: 11 LLVVDKAADMTSHDVVAKCRKAFNTRRVGHAGTLDPMATGVLVIGIERATKLLGLLSLTT 70
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y+ RLG++TST DA+ VI+ + DE+I AS G+I QVP SAIKV
Sbjct: 71 KSYAATIRLGQSTSTDDAEGEVIESRDASGVGDEEIAAVVASLTGDIEQVPAKVSAIKVD 130
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQ--NLIFRVTCSKGTYIRSLCADFG 488
G + + R G EL R +++ +FD+ + D + +L V CS GTYIRSL D G
Sbjct: 131 GRRAHALVRTGAEFELQARPVTVHRFDVLDTRRDGEFIDLDVEVDCSSGTYIRSLARDLG 190
Query: 489 KALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
ALG HLT LRR ++G ++ + + +++E
Sbjct: 191 AALGVGGHLTVLRRTAVGPFTLEHSRTMADVDE 223
>gi|406983071|gb|EKE04320.1| tRNA pseudouridine synthase B [uncultured bacterium]
Length = 300
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 92/218 (42%), Positives = 131/218 (60%), Gaps = 7/218 (3%)
Query: 308 FGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQ 367
FG ++ VNKP +TS V GKLR+++ +K++GH GTLDP+A G+L VC+GKATK++ +Y
Sbjct: 7 FG-IINVNKPIRFTSHDVVGKLRKILNMKQIGHTGTLDPLAVGVLPVCIGKATKII-QYL 64
Query: 368 GMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAI 427
K Y +LG T T+DAD VI+ P ++ DI + F+GEI Q PP++SA+
Sbjct: 65 EESKAYRAYIKLGIKTDTYDADGEVIEDNPV-NLDISDIESRLSRFKGEIIQKPPIYSAV 123
Query: 428 KVGGEKMYDKARRGESIELSPRR----ISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSL 483
G+++Y+ AR IE P R SI DI D LI + CS GTYIRS+
Sbjct: 124 HYKGKRLYEYARANIEIEDIPERKVYINSIELLDILDKDSDHPVLIVDIDCSGGTYIRSI 183
Query: 484 CADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
D G+ALG A L +L R G+++ D + +E+EE
Sbjct: 184 AYDLGEALGYGASLNSLIRTKSGKFTIDKSHTLEEIEE 221
>gi|430376430|ref|ZP_19430833.1| tRNA pseudouridine synthase B [Moraxella macacae 0408225]
gi|429541661|gb|ELA09689.1| tRNA pseudouridine synthase B [Moraxella macacae 0408225]
Length = 309
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 90/215 (41%), Positives = 124/215 (57%), Gaps = 7/215 (3%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKV-----KKVGHAGTLDPMATGLLIVCVGKATKLVDR 365
++L++KP+G TS V K++ L+K KK GH GTLDPMATGLL +C+G+ATK
Sbjct: 9 VILIDKPQGLTSQQVVSKVKFLLKSPIFNSKKAGHTGTLDPMATGLLPICLGEATKFSHY 68
Query: 366 YQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFS 425
K Y + +LG T T DAD +I + I + ++K F G I Q+PPM+S
Sbjct: 69 QLDANKTYEAIVKLGAKTDTGDADGQIIATKEVLPIHPDTLQKVTNQFLGIIPQIPPMYS 128
Query: 426 AIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCA 485
A+K G+K+Y+ AR+G IE R I IF + +L D+ L VTCSKGTY+R L
Sbjct: 129 ALKKDGKKLYELARQGIQIERKAREIEIFSLKL--ALIDKDLLKLVVTCSKGTYVRVLGE 186
Query: 486 DFGKALGSCAHLTALRRDSIGQYSADDAWEFKELE 520
D ++LG+ HL ALRR G + +A LE
Sbjct: 187 DIARSLGTLGHLVALRRIKTGNFDIVNAITLDALE 221
>gi|417931279|ref|ZP_12574647.1| tRNA pseudouridine synthase B [Propionibacterium acnes SK182B-JCVI]
gi|340776018|gb|EGR98068.1| tRNA pseudouridine synthase B [Propionibacterium acnes SK182B-JCVI]
Length = 295
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 93/218 (42%), Positives = 123/218 (56%), Gaps = 6/218 (2%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++V+KP G TS V G++RRL+ +KVGHAGTLDPMA G+LIV + +AT+L+
Sbjct: 8 ILVVDKPAGVTSHQVVGRVRRLMGTRKVGHAGTLDPMANGVLIVGINRATRLLGHLSLHD 67
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y+ RLG T T DA+ V I DE I A G+I QVP SAIKV
Sbjct: 68 KDYTATMRLGVGTVTDDAEGEVTATTDASAIDDEAIGAAMLRQTGQIQQVPTAVSAIKVN 127
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLI----FRVTCSKGTYIRSLCAD 486
G++ Y K R GE + L PR +++ +F E + RQ + VTCS GTY+R+L D
Sbjct: 128 GQRAYAKVRAGEDVVLQPRAVTVSRF--EATAIRRQGQVVDVDVEVTCSSGTYVRALARD 185
Query: 487 FGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAIT 524
G LG HLTALRR +G + A E A+T
Sbjct: 186 VGADLGVGGHLTALRRTRVGPFDLTAACPDIFAEGAVT 223
>gi|443632663|ref|ZP_21116842.1| tRNA pseudouridine synthase B [Bacillus subtilis subsp. inaquosorum
KCTC 13429]
gi|443347486|gb|ELS61544.1| tRNA pseudouridine synthase B [Bacillus subtilis subsp. inaquosorum
KCTC 13429]
Length = 309
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 89/219 (40%), Positives = 131/219 (59%), Gaps = 8/219 (3%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L++KP G TS K+R+L+K KKVGH GTLDP +G+L +CVG+ATK+V+
Sbjct: 5 VLLLHKPVGMTSHDCVMKIRKLLKTKKVGHTGTLDPEVSGVLPICVGRATKIVEYLTEKS 64
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y LG +T+T D ++ +P I D+ K S +G+ Q+PPM+SA+KV
Sbjct: 65 KTYDAEITLGFSTTTEDQTGETVETKPVSQDIDKADVEKVLNSLKGKQEQIPPMYSAVKV 124
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQN-----LIFRVTCSKGTYIRSLC 484
G+K+Y+ AR G +E R I+I DI + E + N F VTCSKGTY+R+L
Sbjct: 125 NGKKLYEYARAGIEVERPKRMITI--EDIALTTEIKHNGETASFRFTVTCSKGTYVRTLA 182
Query: 485 ADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
G+ LG AH++ L R + G +S D+ + F+ELE +
Sbjct: 183 VMIGEKLGFPAHMSHLIRTASGDFSLDECFTFEELEAQV 221
>gi|421747259|ref|ZP_16184988.1| tRNA pseudouridine synthase B [Cupriavidus necator HPC(L)]
gi|409774134|gb|EKN55801.1| tRNA pseudouridine synthase B [Cupriavidus necator HPC(L)]
Length = 323
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 90/212 (42%), Positives = 125/212 (58%), Gaps = 2/212 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L++KP G +S + +RL++ K GH GTLDP+ATGLL +C G+ATK
Sbjct: 20 VLLLDKPLGLSSNDALIRAKRLLRANKAGHTGTLDPLATGLLPLCFGEATKFSQDLLDAD 79
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y RLG+ TST DA+ VI P + +A A F G I QVPPM SA+K
Sbjct: 80 KTYEATVRLGQRTSTGDAEGEVIAERPV-RCDAAALNEALARFVGAIEQVPPMHSALKKD 138
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERS-LEDRQNLIFRVTCSKGTYIRSLCADFGK 489
G +Y+ AR G+++E + R ++I + + R L RVTCSKGTYIR+L D G+
Sbjct: 139 GRPLYEYARAGQTVERAARGVTIHEIALLRCELPGAPVFAMRVTCSKGTYIRTLAEDIGE 198
Query: 490 ALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
ALG AHLTALRR ++G + D A ++L +
Sbjct: 199 ALGCGAHLTALRRTAVGDLTLDGAVTLEQLGQ 230
>gi|227549059|ref|ZP_03979108.1| tRNA pseudouridine synthase B [Corynebacterium lipophiloflavum DSM
44291]
gi|227078841|gb|EEI16804.1| tRNA pseudouridine synthase B [Corynebacterium lipophiloflavum DSM
44291]
Length = 300
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 97/217 (44%), Positives = 133/217 (61%), Gaps = 4/217 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G TS V +LRR + +KVGHAGTLDPMATG+L+ + + TKL+
Sbjct: 13 IVVVDKPAGMTSHDVVTRLRRFFRTRKVGHAGTLDPMATGVLVAGIERGTKLLAHLVAED 72
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y+ RLG T+T DAD V+ I D DI A GEI QVP SAIK+G
Sbjct: 73 KVYAATIRLGATTTTDDADGDVVMCADASQIGDADIAAGIAELTGEIMQVPSSVSAIKIG 132
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLI---FRVTCSKGTYIRSLCADF 487
G + ++ R GE++++ PR +++F+F ++ ++I RV CSKGTYIRSL D
Sbjct: 133 GRRAHELVRSGETVDIPPREVTVFRFH-ALAVRRHASVIDVDVRVHCSKGTYIRSLARDL 191
Query: 488 GKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAIT 524
G ALG HLTALRR+++G ++ DDA +LE A T
Sbjct: 192 GAALGVGGHLTALRREAVGAFTLDDARSLTQLETAPT 228
>gi|116511973|ref|YP_809189.1| tRNA pseudouridine synthase B [Lactococcus lactis subsp. cremoris
SK11]
gi|123025413|sp|Q02Z55.1|TRUB_LACLS RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|116107627|gb|ABJ72767.1| tRNA pseudouridine synthase B [Lactococcus lactis subsp. cremoris
SK11]
Length = 330
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 84/214 (39%), Positives = 128/214 (59%), Gaps = 6/214 (2%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
V K GWTSF V KLR ++K KK+GH GTLDP TG+L + VGK+T+L++ + K Y
Sbjct: 11 VYKEAGWTSFDVVAKLRCILKTKKIGHGGTLDPSVTGVLPIAVGKSTRLLEYMEAAGKIY 70
Query: 374 SGVFRLGEATSTWDADSPVIQREPWE-HIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGE 432
G +G +T T DAD ++ + P + ++ + +I A + F G+I Q+PPM+SA+K+ G+
Sbjct: 71 EGQVTIGFSTETEDADGAIVNQTPVKNNLTESEIDSAMSRFVGKIKQIPPMYSAVKINGK 130
Query: 433 KMYDKARRGESIELSPRRISIFQFDIERSL-----EDRQNLIFRVTCSKGTYIRSLCADF 487
K+Y+ AR G++IE R I+I F + E F+V CSKGTY+R+L D
Sbjct: 131 KLYEYARAGQTIERPAREITIKSFVRTSPIDWNKEEGLVTFSFKVECSKGTYVRTLAVDL 190
Query: 488 GKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
+LG H++ L+R + DA + ++EE
Sbjct: 191 ADSLGYAGHMSKLQRTASNGLLIKDAIKLSKIEE 224
>gi|414074291|ref|YP_006999508.1| tRNA pseudouridine synthase B [Lactococcus lactis subsp. cremoris
UC509.9]
gi|413974211|gb|AFW91675.1| tRNA pseudouridine synthase B [Lactococcus lactis subsp. cremoris
UC509.9]
Length = 330
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 84/214 (39%), Positives = 128/214 (59%), Gaps = 6/214 (2%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
V K GWTSF V KLR ++K KK+GH GTLDP TG+L + VGK+T+L++ + K Y
Sbjct: 11 VYKEAGWTSFDVVAKLRCILKTKKIGHGGTLDPSVTGVLPIAVGKSTRLLEYMEAAGKIY 70
Query: 374 SGVFRLGEATSTWDADSPVIQREPWE-HIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGE 432
G +G +T T DAD ++ + P + ++ + +I A + F G+I Q+PPM+SA+K+ G+
Sbjct: 71 EGQLTIGFSTETEDADGAIVNQTPVKNNLTESEIDSAMSRFVGKIKQIPPMYSAVKINGK 130
Query: 433 KMYDKARRGESIELSPRRISIFQFDIERSL-----EDRQNLIFRVTCSKGTYIRSLCADF 487
K+Y+ AR G++IE R I+I F + E F+V CSKGTY+R+L D
Sbjct: 131 KLYEYARAGQTIERPAREITIKSFVRTSPIDWNKEEGLVTFSFKVECSKGTYVRTLAVDL 190
Query: 488 GKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
+LG H++ L+R + DA + ++EE
Sbjct: 191 ADSLGYAGHMSKLQRTASNGLLIKDANKLSKIEE 224
>gi|385262124|ref|ZP_10040239.1| tRNA pseudouridine(55) synthase [Streptococcus sp. SK643]
gi|385191865|gb|EIF39277.1| tRNA pseudouridine(55) synthase [Streptococcus sp. SK643]
Length = 292
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 88/222 (39%), Positives = 128/222 (57%), Gaps = 4/222 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ + K G TS KLR+++ KK+GH GTLDP G+L + VGKAT++V+ Q
Sbjct: 4 IINLKKEAGMTSHDAVFKLRKILGTKKIGHGGTLDPDVVGVLPIAVGKATRMVEFMQDEG 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDED-IRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V+ DE+ + +A AS G I Q+PPM+SA+KV
Sbjct: 64 KVYEGEITLGYSTTTEDASGEVVAETSVLSPLDENLVDEAIASLTGPITQIPPMYSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNL---IFRVTCSKGTYIRSLCAD 486
G K+Y+ AR G+ +E R+++I+QF+ + +L FRV CSKGTYIR+L D
Sbjct: 124 NGRKLYEYARAGQEVERPERQVTIYQFERTSPISYEGHLARFTFRVKCSKGTYIRTLSVD 183
Query: 487 FGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAITKNYF 528
G+ LG AH++ L R S +DA +E+ E + F
Sbjct: 184 LGEKLGYAAHMSHLTRTSAAGLQLEDALTLEEIAEKVEAGQF 225
>gi|417914922|ref|ZP_12558553.1| tRNA pseudouridine synthase B [Streptococcus mitis bv. 2 str. SK95]
gi|342835673|gb|EGU69907.1| tRNA pseudouridine synthase B [Streptococcus mitis bv. 2 str. SK95]
Length = 292
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 89/217 (41%), Positives = 125/217 (57%), Gaps = 4/217 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ + K G TS KLR+++ KK+GH GTLDP G+L + VGKAT++V+ Q
Sbjct: 4 IINLKKEAGMTSHDAVFKLRKILGTKKIGHGGTLDPDVVGVLPIAVGKATRMVEFMQDEG 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDED-IRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T T DA V+ P DE I + ASF G I Q+PPM+SA+KV
Sbjct: 64 KVYEGEITLGYSTITEDASGEVVAETPVLSPLDEKLIDETIASFTGPITQIPPMYSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIERSLE---DRQNLIFRVTCSKGTYIRSLCAD 486
G K+Y+ AR G+ IE R+++I+QF+ + + FRV CSKGTYIR+L D
Sbjct: 124 NGRKLYEYARAGQEIERPERQVTIYQFERTSPISYEGELARFTFRVKCSKGTYIRTLSVD 183
Query: 487 FGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
G+ LG AH++ L R S +DA +E+ E +
Sbjct: 184 LGEKLGYAAHMSHLTRTSAAGLQLEDALTLEEIAEKV 220
>gi|345002395|ref|YP_004805249.1| tRNA pseudouridine synthase B [Streptomyces sp. SirexAA-E]
gi|344318021|gb|AEN12709.1| tRNA pseudouridine synthase B [Streptomyces sp. SirexAA-E]
Length = 301
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 88/221 (39%), Positives = 124/221 (56%), Gaps = 7/221 (3%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G+TS V K+R + + ++VGHAGTLDPMATG+L++ V +ATKL+
Sbjct: 13 LVVVDKPAGFTSHDVVAKMRGIARTRRVGHAGTLDPMATGVLVLGVERATKLLGHLALTE 72
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y G RLG+ T T DA+ + + E + A+ G I QVP SAIK+
Sbjct: 73 KEYLGTIRLGQDTVTDDAEGEITSSTDASGVTREAVDAGIAALTGAIMQVPSKVSAIKID 132
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDI----ERSLEDRQ---NLIFRVTCSKGTYIRSL 483
G++ Y + R GE E+ R +++ F + E ED +L+ V CS GTYIR+L
Sbjct: 133 GKRSYARVRGGEEFEIPARPVTVSSFRVYDVREAVAEDGTPVLDLVVSVVCSSGTYIRAL 192
Query: 484 CADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAIT 524
D G LG HLTALRR +G Y D A + +E +T
Sbjct: 193 ARDLGAGLGVGGHLTALRRTRVGPYGIDAARTLDQHQEELT 233
>gi|384135118|ref|YP_005517832.1| tRNA pseudouridine synthase B [Alicyclobacillus acidocaldarius
subsp. acidocaldarius Tc-4-1]
gi|339289203|gb|AEJ43313.1| tRNA pseudouridine synthase B [Alicyclobacillus acidocaldarius
subsp. acidocaldarius Tc-4-1]
Length = 302
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 84/205 (40%), Positives = 126/205 (61%), Gaps = 2/205 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L++KPKG TS V ++RR + V++VGHAGTLDPMATGLL++CVG+ T+L++
Sbjct: 7 VLLIDKPKGMTSHDVVHRVRRKLGVRRVGHAGTLDPMATGLLMICVGRVTRLLEYLGQGD 66
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y G G T T DA+ V+ + + +R+AAA GEI Q PP +SAI +
Sbjct: 67 KEYCGTVVFGVGTDTDDAEGTVVAQAQATGLDLAAVREAAARLTGEIRQRPPAYSAIHID 126
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLI--FRVTCSKGTYIRSLCADFG 488
G + YD AR+G+ +E+ R + + ++ + + + F V CSKGTY+R+LC D G
Sbjct: 127 GRRAYDLARQGKKVEIPERTVHVRTLTLDEFHHEGELAVARFHVRCSKGTYVRALCRDLG 186
Query: 489 KALGSCAHLTALRRDSIGQYSADDA 513
+G AH+ +LRR +IG +DA
Sbjct: 187 ALVGVPAHMRSLRRLAIGCARVEDA 211
>gi|221231911|ref|YP_002511063.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae ATCC
700669]
gi|415698798|ref|ZP_11457297.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae 459-5]
gi|415749576|ref|ZP_11477520.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae SV35]
gi|415752263|ref|ZP_11479374.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae SV36]
gi|418123464|ref|ZP_12760397.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA44378]
gi|418128053|ref|ZP_12764948.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae NP170]
gi|418178227|ref|ZP_12814811.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA41565]
gi|419473253|ref|ZP_14013104.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA13430]
gi|220674371|emb|CAR68920.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae ATCC
700669]
gi|353796810|gb|EHD77148.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA44378]
gi|353799484|gb|EHD79802.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae NP170]
gi|353845001|gb|EHE25044.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA41565]
gi|379552760|gb|EHZ17849.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA13430]
gi|381309959|gb|EIC50792.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae SV36]
gi|381316670|gb|EIC57415.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae 459-5]
gi|381317870|gb|EIC58595.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae SV35]
Length = 292
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 89/217 (41%), Positives = 128/217 (58%), Gaps = 4/217 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ + K G TS KLR+++ KK+GH GTLDP G+L + VGKAT++V+ Q
Sbjct: 4 IINLKKEAGMTSHDAVFKLRKILGTKKIGHGGTLDPDVVGVLPIAVGKATRMVEFMQDEG 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDED-IRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V+ + P DE + +A AS G I Q+PPM+SA+KV
Sbjct: 64 KIYEGEIILGYSTTTEDASGEVVAKTPVLSSLDEKLVDEAIASLTGPITQIPPMYSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIERSLE-DRQ--NLIFRVTCSKGTYIRSLCAD 486
G K+Y+ AR G+ +E R+++I+QF+ + D Q FRV CSKGTYIR+L D
Sbjct: 124 NGRKLYEYARAGQEVERPERQVTIYQFERTSPISYDGQLARFTFRVKCSKGTYIRTLSVD 183
Query: 487 FGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
G+ LG AH++ L R S +DA +E+ E +
Sbjct: 184 LGEKLGYAAHMSHLTRTSAAGLQLEDALTLEEIAEKV 220
>gi|282854624|ref|ZP_06263959.1| tRNA pseudouridine synthase B [Propionibacterium acnes J139]
gi|386069724|ref|YP_005984620.1| tRNA pseudouridine synthase B [Propionibacterium acnes ATCC 11828]
gi|422390108|ref|ZP_16470204.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL103PA1]
gi|422458724|ref|ZP_16535375.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL050PA2]
gi|422462994|ref|ZP_16539613.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL060PA1]
gi|422467272|ref|ZP_16543826.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL110PA4]
gi|422469350|ref|ZP_16545875.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL110PA3]
gi|422565398|ref|ZP_16641047.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL082PA2]
gi|282582206|gb|EFB87588.1| tRNA pseudouridine synthase B [Propionibacterium acnes J139]
gi|314966059|gb|EFT10158.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL082PA2]
gi|314981892|gb|EFT25985.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL110PA3]
gi|315090756|gb|EFT62732.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL110PA4]
gi|315095005|gb|EFT66981.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL060PA1]
gi|315104230|gb|EFT76206.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL050PA2]
gi|327328062|gb|EGE69831.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL103PA1]
gi|353454091|gb|AER04610.1| tRNA pseudouridine synthase B [Propionibacterium acnes ATCC 11828]
Length = 295
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 125/217 (57%), Gaps = 4/217 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++V+KP G TS V G++RRL+ +KVGHAGTLDPMA+G+L+V V +AT+L+
Sbjct: 8 VLVVDKPAGVTSHQVVGRVRRLMGTRKVGHAGTLDPMASGVLVVGVNRATRLLGHLSLHD 67
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y+ RLG T T DA+ V I+D I A A GEI QVP SAIKV
Sbjct: 68 KDYTATMRLGVGTVTDDAEGDVTVTTDASAIEDRAIHAAMARQTGEIQQVPAAVSAIKVN 127
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLI---FRVTCSKGTYIRSLCADF 487
G + Y K R GE + L PR +++ +F+ ++ +I VTCS GTY+R+L D
Sbjct: 128 GRRAYAKVRAGEDVVLRPRTVTVSRFE-AIAIRRHGQVIDADVEVTCSSGTYVRALARDI 186
Query: 488 GKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAIT 524
G LG HLTALRR +G + A ++A+T
Sbjct: 187 GADLGVGGHLTALRRTRVGPFDLTAACVDIFAQDAVT 223
>gi|329929279|ref|ZP_08283032.1| tRNA pseudouridine synthase B [Paenibacillus sp. HGF5]
gi|328936648|gb|EGG33091.1| tRNA pseudouridine synthase B [Paenibacillus sp. HGF5]
Length = 303
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 82/216 (37%), Positives = 131/216 (60%), Gaps = 8/216 (3%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ V+KP GWTS V K+R +V++K++GH GTLDP TG+L +C+G+AT++V+ Q +
Sbjct: 7 ILAVHKPAGWTSHDVVAKVRGMVRLKRIGHTGTLDPEVTGVLPLCLGRATRVVEYLQELP 66
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y V RLG +T T D V++ + ++ +A SF G+I QVPPM+SA+K+
Sbjct: 67 KEYHAVLRLGYSTDTEDITGNVVETADEVRVTRDEALEALQSFTGQISQVPPMYSAVKIN 126
Query: 431 GEKMYDKARRGESIELSPRRISIFQ-----FDIERSLEDRQNLIFRVTCSKGTYIRSLCA 485
G+++Y+ AR G+++E R ++I + FD E + + FRV CSKGTYIR+LC
Sbjct: 127 GKRLYELAREGKTVERKSRTVTIHEIEMTDFDPE---GEYTEISFRVLCSKGTYIRTLCV 183
Query: 486 DFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
D G+ LG + + L R + +++E+
Sbjct: 184 DIGRKLGLPSVMVKLVRTISAGITEAQCLTLEQIEQ 219
>gi|256851254|ref|ZP_05556643.1| tRNA pseudouridine synthase B [Lactobacillus jensenii 27-2-CHN]
gi|260660678|ref|ZP_05861593.1| tRNA pseudouridine synthase B [Lactobacillus jensenii 115-3-CHN]
gi|256616316|gb|EEU21504.1| tRNA pseudouridine synthase B [Lactobacillus jensenii 27-2-CHN]
gi|260548400|gb|EEX24375.1| tRNA pseudouridine synthase B [Lactobacillus jensenii 115-3-CHN]
Length = 295
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 85/214 (39%), Positives = 136/214 (63%), Gaps = 4/214 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++++NK KG TS V KLR+++K +K+GHAGTLDP G+L + +G+ATKL++
Sbjct: 5 ILVINKSKGMTSGDVVYKLRKILKTRKIGHAGTLDPEVEGVLPIAIGQATKLIELMHERP 64
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPW-EHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y+G LG +T ++D + V+QR+ E I E+I+K SF G+I QVPP++SA+KV
Sbjct: 65 KSYTGRGLLGFSTDSYDTEGKVLQRKAVSEKIPLEEIQKGMNSFLGKIDQVPPIYSAVKV 124
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIERSL---EDRQNLIFRVTCSKGTYIRSLCAD 486
G+++Y+ AR G + R + IF++ + + +++ F + CSKGTY+RSL D
Sbjct: 125 NGKRLYEYAREGIQVTRPVRSVEIFKYKLLEPVNYQNEQEEFGFNIECSKGTYVRSLVND 184
Query: 487 FGKALGSCAHLTALRRDSIGQYSADDAWEFKELE 520
G+ LG A +T L+R S ++ + A + +ELE
Sbjct: 185 LGEKLGYPAVMTYLQRTSSSGFNLEKAVKLEELE 218
>gi|168493134|ref|ZP_02717277.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae CDC3059-06]
gi|418073983|ref|ZP_12711239.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA11184]
gi|418078679|ref|ZP_12715902.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae 4027-06]
gi|418080651|ref|ZP_12717863.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae 6735-05]
gi|418089586|ref|ZP_12726742.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA43265]
gi|418098558|ref|ZP_12735657.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae 6901-05]
gi|418105274|ref|ZP_12742332.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA44500]
gi|418114757|ref|ZP_12751745.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae 5787-06]
gi|418116924|ref|ZP_12753894.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae 6963-05]
gi|418135251|ref|ZP_12772107.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA11426]
gi|418182827|ref|ZP_12819387.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA43380]
gi|418216642|ref|ZP_12843365.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae
Netherlands15B-37]
gi|419431598|ref|ZP_13971738.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae EU-NP05]
gi|419434313|ref|ZP_13974430.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA40183]
gi|419440416|ref|ZP_13980464.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA40410]
gi|419464599|ref|ZP_14004491.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA04175]
gi|419469052|ref|ZP_14008923.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA06083]
gi|419497374|ref|ZP_14037083.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA47522]
gi|421281173|ref|ZP_15731971.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA04672]
gi|421309626|ref|ZP_15760253.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA62681]
gi|183576608|gb|EDT97136.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae CDC3059-06]
gi|353747870|gb|EHD28526.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae 4027-06]
gi|353749483|gb|EHD30127.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA11184]
gi|353753191|gb|EHD33815.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae 6735-05]
gi|353761584|gb|EHD42150.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA43265]
gi|353769918|gb|EHD50434.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae 6901-05]
gi|353777339|gb|EHD57812.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA44500]
gi|353786270|gb|EHD66683.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae 5787-06]
gi|353789285|gb|EHD69680.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae 6963-05]
gi|353848968|gb|EHE28978.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA43380]
gi|353872234|gb|EHE52100.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae
Netherlands15B-37]
gi|353901399|gb|EHE76941.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA11426]
gi|379537633|gb|EHZ02815.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA04175]
gi|379547155|gb|EHZ12293.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA06083]
gi|379575697|gb|EHZ40627.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA40183]
gi|379578556|gb|EHZ43465.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA40410]
gi|379600843|gb|EHZ65622.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA47522]
gi|379630165|gb|EHZ94755.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae EU-NP05]
gi|395882334|gb|EJG93381.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA04672]
gi|395911047|gb|EJH21916.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA62681]
Length = 292
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 90/217 (41%), Positives = 127/217 (58%), Gaps = 4/217 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ + K G TS KLR+++ KK+GH GTLDP G+L + VGKAT++V+ Q
Sbjct: 4 IINLKKEAGITSHDAVFKLRKILGTKKIGHGGTLDPDVVGVLPIAVGKATRMVEFMQDEG 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDED-IRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA VI P DE + +A AS G I Q+PPM+SA+KV
Sbjct: 64 KIYEGEITLGYSTTTEDASGEVIAETPVLSPLDEKLVDEAIASLTGPITQIPPMYSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIERSLE-DRQ--NLIFRVTCSKGTYIRSLCAD 486
G K+Y+ AR G+ +E R+++I+QF+ + D Q FRV CSKGTYIR+L D
Sbjct: 124 NGRKLYEYARAGQEVERPERQVTIYQFERTSPISYDGQLARFTFRVKCSKGTYIRTLSVD 183
Query: 487 FGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
G+ LG AH++ L R S +DA +E+ E +
Sbjct: 184 LGEKLGYAAHMSHLTRTSAAGLQLEDALALEEIAEKV 220
>gi|149008185|ref|ZP_01831690.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae SP18-BS74]
gi|307127198|ref|YP_003879229.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae 670-6B]
gi|417676946|ref|ZP_12326355.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA17545]
gi|418096296|ref|ZP_12733410.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA16531]
gi|418125846|ref|ZP_12762754.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA44511]
gi|418155199|ref|ZP_12791929.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA16242]
gi|418191762|ref|ZP_12828266.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA47388]
gi|418214395|ref|ZP_12841130.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA54644]
gi|418225600|ref|ZP_12852228.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae NP112]
gi|419466610|ref|ZP_14006493.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA05248]
gi|419483924|ref|ZP_14023700.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA43257]
gi|419512562|ref|ZP_14052196.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA05578]
gi|419516833|ref|ZP_14056450.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA02506]
gi|421283362|ref|ZP_15734149.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA04216]
gi|421301074|ref|ZP_15751744.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA19998]
gi|147760366|gb|EDK67346.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae SP18-BS74]
gi|306484260|gb|ADM91129.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae 670-6B]
gi|332074545|gb|EGI85019.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA17545]
gi|353770208|gb|EHD50723.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA16531]
gi|353796627|gb|EHD76966.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA44511]
gi|353821030|gb|EHE01210.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA16242]
gi|353857663|gb|EHE37626.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA47388]
gi|353871678|gb|EHE51549.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA54644]
gi|353880797|gb|EHE60611.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae NP112]
gi|379544733|gb|EHZ09877.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA05248]
gi|379583435|gb|EHZ48312.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA43257]
gi|379637032|gb|EIA01590.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA05578]
gi|379639601|gb|EIA04143.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA02506]
gi|395881325|gb|EJG92374.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA04216]
gi|395898634|gb|EJH09578.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA19998]
Length = 292
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 89/217 (41%), Positives = 127/217 (58%), Gaps = 4/217 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ + K G TS KLR+++ KK+GH GTLDP G+L + VGKAT++V+ Q
Sbjct: 4 IINLKKEAGMTSHDAVFKLRKILGTKKIGHGGTLDPDVVGVLPIAVGKATRMVEFMQDEG 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDED-IRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V+ P DE + +A AS G I Q+PPM+SA+KV
Sbjct: 64 KIYEGEITLGYSTTTEDASGEVVAETPVLSPLDEKLVDEAIASLTGPITQIPPMYSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIERSLE-DRQ--NLIFRVTCSKGTYIRSLCAD 486
G K+Y+ AR G+ +E R+++I+QF+ + D Q FRV CSKGTYIR+L D
Sbjct: 124 NGRKLYEYARAGQEVERPERQVTIYQFERTSPISYDGQLARFTFRVKCSKGTYIRTLSVD 183
Query: 487 FGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
G+ LG AH++ L R S +DA +E+ E +
Sbjct: 184 LGEKLGYAAHMSHLTRTSAAGLQLEDALSLEEIAEKV 220
>gi|386842880|ref|YP_006247938.1| tRNA pseudouridine synthase B [Streptomyces hygroscopicus subsp.
jinggangensis 5008]
gi|374103181|gb|AEY92065.1| tRNA pseudouridine synthase B [Streptomyces hygroscopicus subsp.
jinggangensis 5008]
gi|451796172|gb|AGF66221.1| tRNA pseudouridine synthase B [Streptomyces hygroscopicus subsp.
jinggangensis TL01]
Length = 301
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 89/221 (40%), Positives = 125/221 (56%), Gaps = 7/221 (3%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G+TS V K+R + + ++VGHAGTLDPMATG+L++ V +ATKL+
Sbjct: 11 LVIVDKPSGFTSHDVVAKMRGIARTRRVGHAGTLDPMATGVLVLGVERATKLLGHLALTE 70
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y G RLG+ T T DA+ + + + I A G+I QVP SAIK+
Sbjct: 71 KEYLGTVRLGQNTLTDDAEGEITSSADASKVTRDAIDAGIAKLTGDIMQVPSKVSAIKID 130
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDI----ERSLEDRQ---NLIFRVTCSKGTYIRSL 483
G + Y +AR GE E+ R ++I F + + ED +L+ V CS GTYIR+L
Sbjct: 131 GVRSYKRAREGEDFEIPARPVTISSFTVYDVRDAVAEDGTPVLDLVVSVVCSSGTYIRAL 190
Query: 484 CADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAIT 524
D G LG HLTALRR +G Y D A +L++ +T
Sbjct: 191 ARDLGADLGVGGHLTALRRTRVGPYKLDAAKTLDQLQQELT 231
>gi|416215263|ref|ZP_11623298.1| tRNA pseudouridine synthase B [Neisseria meningitidis M01-240013]
gi|325143449|gb|EGC65775.1| tRNA pseudouridine synthase B [Neisseria meningitidis M01-240013]
Length = 314
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 87/209 (41%), Positives = 121/209 (57%), Gaps = 3/209 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L++KP+G +S T K RRL +K GH G LDP+ATGLL VC G+ATK
Sbjct: 21 VLLLDKPEGLSSNTALQKARRLFHAEKAGHTGVLDPLATGLLPVCFGEATKFAQYLLDAD 80
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y+ +LGEA+ST DA+ +I + I + + A + G I QVPPMFSA+K
Sbjct: 81 KAYTATLKLGEASSTGDAEGEIIATARAD-ISLAEFQTACQALTGNIRQVPPMFSALKHE 139
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKA 490
G+ +Y+ AR+G IE PR I+++ DI D + V CSKGTYIR+L D K
Sbjct: 140 GKPLYEYARKGIVIERKPRDITVYAIDIAEF--DAPKAVISVRCSKGTYIRTLSEDIAKH 197
Query: 491 LGSCAHLTALRRDSIGQYSADDAWEFKEL 519
+G+ AHLTALRR ++ + + L
Sbjct: 198 IGTFAHLTALRRTETAGFTIAQSHTLEAL 226
>gi|225570600|ref|ZP_03779625.1| hypothetical protein CLOHYLEM_06702 [Clostridium hylemonae DSM
15053]
gi|225160613|gb|EEG73232.1| hypothetical protein CLOHYLEM_06702 [Clostridium hylemonae DSM
15053]
Length = 305
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 85/210 (40%), Positives = 121/210 (57%), Gaps = 2/210 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ V K KG+TS V KLR + + KK+GH GTLDP A G+L VC+GKAT+L D
Sbjct: 5 VINVYKEKGFTSHDVVAKLRGITRQKKIGHTGTLDPDAEGVLPVCMGKATRLCDMLTDKD 64
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y V LG T T D ++ + H+ +E +R+A SF GE Q PPM+SA+KV
Sbjct: 65 KTYEAVLLLGTETDTQDTSGVILAGKDTSHLTEETVRRAVLSFTGEYEQTPPMYSAVKVN 124
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKA 490
G K+Y+ AR G+ +E S R++ I + I D + + CSKGTYIR+LC D G++
Sbjct: 125 GRKLYELAREGKVVERSARKVRIHEIRI--LAVDLPRVRMEIHCSKGTYIRTLCHDIGQS 182
Query: 491 LGSCAHLTALRRDSIGQYSADDAWEFKELE 520
LG + L R G++ ++ E+E
Sbjct: 183 LGCGGCMEQLFRTRAGRFEIAESLRLSEIE 212
>gi|293192218|ref|ZP_06609387.1| tRNA pseudouridine synthase B [Actinomyces odontolyticus F0309]
gi|292820334|gb|EFF79327.1| tRNA pseudouridine synthase B [Actinomyces odontolyticus F0309]
Length = 339
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 95/237 (40%), Positives = 130/237 (54%), Gaps = 24/237 (10%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
M++++KP+G TS V ++RRL +KVGH GTLDPMATG+L++ +GKATKL+ G
Sbjct: 1 MLVIDKPQGLTSHDVVSRVRRLAHTRKVGHGGTLDPMATGVLVIGIGKATKLLTWVSGHS 60
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y R G AT+T DA+ + +E + A A RG+I QVP SAIKV
Sbjct: 61 KEYRATIRFGVATNTDDAEGVATAAVGCASLSEEQLEAAFAPLRGDIMQVPSTVSAIKVN 120
Query: 431 GEKMYDKARRGESIELSPRRISIFQFD-------IERSLE--DRQNL------------- 468
G++ Y AR G+ +EL+ R + I + + +E +LE D N
Sbjct: 121 GKRAYALARAGDDVELAARPVRISRLEVLAPPRPVECTLEEADADNAPDEQVPSGPVRVV 180
Query: 469 --IFRVTCSKGTYIRSLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
V CS GTY+R+L D G+ALG AHLTALRR +G D A +EL A+
Sbjct: 181 DVDVVVECSSGTYVRALARDAGEALGVGAHLTALRRTRVGDVHLDTAITLEELSAAV 237
>gi|166030870|ref|ZP_02233699.1| hypothetical protein DORFOR_00550 [Dorea formicigenerans ATCC
27755]
gi|166029137|gb|EDR47894.1| tRNA pseudouridine synthase B [Dorea formicigenerans ATCC 27755]
Length = 304
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 84/207 (40%), Positives = 121/207 (58%), Gaps = 2/207 (0%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
V K +G+TS V KLR +V KK+GH GTLDP A G+L VC+G+ATKL D K Y
Sbjct: 8 VYKEQGFTSHDVVAKLRGIVGQKKIGHTGTLDPDAVGVLPVCLGRATKLCDMLTDKDKVY 67
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEK 433
V LG T T D +++ + + +E +R A F G+ QVPPM+SA+K+ G+K
Sbjct: 68 EAVMLLGVETDTQDTTGQILKSSETDELTEEQVRAAVLDFVGDYNQVPPMYSALKINGKK 127
Query: 434 MYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKALGS 493
+Y+ AR G+ +E + RR+ IF +I R + +V CSKGTYIR+LC D G+ LG
Sbjct: 128 LYELAREGKIVERAARRVQIFDIEILSIALPRVTM--KVHCSKGTYIRTLCHDIGQKLGC 185
Query: 494 CAHLTALRRDSIGQYSADDAWEFKELE 520
A + L R + ++ D+ ++E
Sbjct: 186 GACMEKLTRTKVSRFEIKDSLTLAQIE 212
>gi|423136560|ref|ZP_17124203.1| tRNA pseudouridine synthase B [Fusobacterium nucleatum subsp.
animalis F0419]
gi|371961714|gb|EHO79338.1| tRNA pseudouridine synthase B [Fusobacterium nucleatum subsp.
animalis F0419]
Length = 287
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 91/219 (41%), Positives = 138/219 (63%), Gaps = 5/219 (2%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++VNKPKG TSF V KL++++K KK+GH GTLDP+ATG+++VCVG+ATKL +
Sbjct: 4 IIVVNKPKGITSFDVIRKLKKILKTKKIGHTGTLDPLATGIMLVCVGRATKLASDLEAKD 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y F +G AT T+D + I E I E++ ++ F G I Q+PPM+SAIK+
Sbjct: 64 KIYIADFDIGYATDTYDIEGKKIAENTIE-ISKENLEQSIKKFIGNIKQIPPMYSAIKID 122
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLI-FRVTCSKGTYIRSLCADFGK 489
G K+Y AR+G +E R ++I ++ L+ + N + SKG YIRSL D G+
Sbjct: 123 GNKLYHLARKGIEVERPERNVTIEYINL---LDFKDNKVKIETKVSKGCYIRSLIYDIGQ 179
Query: 490 ALGSCAHLTALRRDSIGQYSADDAWEFKELEEAITKNYF 528
LGS A +TAL+R +G YS ++++ +++E+ + N F
Sbjct: 180 DLGSYATMTALQRKQVGDYSLENSYSLEQIEKMVLNNDF 218
>gi|410476621|ref|YP_006743380.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae gamPNI0373]
gi|444387894|ref|ZP_21185895.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae PCS125219]
gi|444389672|ref|ZP_21187587.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae PCS70012]
gi|444391981|ref|ZP_21189742.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae PCS81218]
gi|444395211|ref|ZP_21192757.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae PNI0002]
gi|444397663|ref|ZP_21195146.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae PNI0006]
gi|444400555|ref|ZP_21197946.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae PNI0007]
gi|444404761|ref|ZP_21201703.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae PNI0009]
gi|444407284|ref|ZP_21203951.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae PNI0010]
gi|444417002|ref|ZP_21213067.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae PNI0360]
gi|444420389|ref|ZP_21216180.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae PNI0427]
gi|406369566|gb|AFS43256.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae gamPNI0373]
gi|444251307|gb|ELU57778.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae PCS125219]
gi|444256135|gb|ELU62473.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae PCS70012]
gi|444258530|gb|ELU64852.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae PNI0002]
gi|444260320|gb|ELU66628.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae PNI0006]
gi|444264237|gb|ELU70338.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae PCS81218]
gi|444266049|gb|ELU72025.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae PNI0007]
gi|444270880|gb|ELU76631.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae PNI0010]
gi|444276218|gb|ELU81792.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae PNI0009]
gi|444284763|gb|ELU89880.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae PNI0360]
gi|444284820|gb|ELU89930.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae PNI0427]
Length = 292
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 89/217 (41%), Positives = 127/217 (58%), Gaps = 4/217 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ + K G TS KLR+++ KK+GH GTLDP G+L + VGKAT++V+ Q
Sbjct: 4 IINLKKESGMTSHDAVFKLRKILGTKKIGHGGTLDPDVVGVLPIAVGKATRMVEFMQDEG 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDED-IRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V+ P DE + +A AS G I Q+PPM+SA+KV
Sbjct: 64 KIYEGEITLGYSTTTEDASGEVVAETPVLSPLDEKLVDEAIASLTGPITQIPPMYSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIERSLE-DRQ--NLIFRVTCSKGTYIRSLCAD 486
G K+Y+ AR G+ +E R+++I+QF+ + D Q FRV CSKGTYIR+L D
Sbjct: 124 NGRKLYEYARAGQEVERPERQVTIYQFERTSPISYDGQLARFTFRVKCSKGTYIRTLSVD 183
Query: 487 FGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
G+ LG AH++ L R S +DA +E+ E +
Sbjct: 184 LGEKLGYAAHMSHLTRTSAAGLQLEDALTLEEIAEKV 220
>gi|254373390|ref|ZP_04988878.1| tRNA pseudouridine synthase B [Francisella tularensis subsp.
novicida GA99-3549]
gi|254374853|ref|ZP_04990334.1| tRNA pseudouridine synthetase B [Francisella novicida GA99-3548]
gi|151571116|gb|EDN36770.1| tRNA pseudouridine synthase B [Francisella novicida GA99-3549]
gi|151572572|gb|EDN38226.1| tRNA pseudouridine synthetase B [Francisella novicida GA99-3548]
Length = 302
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 85/213 (39%), Positives = 127/213 (59%), Gaps = 5/213 (2%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V++NK K +S V +L+ L +K GH GTLDPMATG+L +C G+ATK+
Sbjct: 11 VVVINKAKDISSNKVLQQLKYLFNAQKAGHTGTLDPMATGVLPICFGRATKIAQYLLDAD 70
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREP-WEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y RLG T + DA+ +I + P + E + A FRG++ Q+PPM+SA+K
Sbjct: 71 KEYIATIRLGIETDSGDAEGEIIAKSPNIPELSAEYLETVLAKFRGDVVQIPPMYSALKY 130
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIERSLE-DRQNLIFRVTCSKGTYIRSLCADFG 488
G+ +Y AR G+++E+ R I I++ ++ LE + +L RV CSKGTYIRSL D G
Sbjct: 131 NGQPLYKLAREGKTVEVKSRNIKIYELEL---LEFNIDSLKIRVKCSKGTYIRSLAIDIG 187
Query: 489 KALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
K LG HL AL+R G + +A+ ++L++
Sbjct: 188 KTLGCGGHLIALQRTQSGPFKLSEAFRLEQLKD 220
>gi|398304213|ref|ZP_10507799.1| tRNA pseudouridine synthase B [Bacillus vallismortis DV1-F-3]
Length = 309
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 89/216 (41%), Positives = 130/216 (60%), Gaps = 8/216 (3%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L++KP G TS K+R+L+K KKVGH GTLDP +G+L +CVG+ATK+V+
Sbjct: 5 VLLLHKPVGMTSHDCVMKIRKLLKTKKVGHTGTLDPEVSGVLPICVGRATKIVEYLTEKS 64
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPW-EHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y LG +T+T D ++ +P + I D+ K S +G+ Q+PPM+SA+KV
Sbjct: 65 KTYDAEITLGFSTTTEDQTGETVETKPVNQDIDKADVEKVLNSLKGKQEQIPPMYSAVKV 124
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQN-----LIFRVTCSKGTYIRSLC 484
G+K+Y+ AR G +E R I+I DI + E + N F VTCSKGTY+R+L
Sbjct: 125 NGKKLYEYARAGIEVERPKRMITI--EDIALTTEIKHNGETASFRFTVTCSKGTYVRTLA 182
Query: 485 ADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELE 520
G+ LG AH++ L R + G +S D+ + F ELE
Sbjct: 183 VMIGEKLGYPAHMSHLIRTASGDFSLDECFTFDELE 218
>gi|419493365|ref|ZP_14033091.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA47210]
gi|421289813|ref|ZP_15740564.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA54354]
gi|421305132|ref|ZP_15755788.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA62331]
gi|379593540|gb|EHZ58352.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA47210]
gi|395889054|gb|EJH00065.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA54354]
gi|395905794|gb|EJH16699.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA62331]
Length = 292
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 90/217 (41%), Positives = 127/217 (58%), Gaps = 4/217 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ + K G TS KLR+++ KK+GH GTLDP G+L + VGKAT++V+ Q
Sbjct: 4 IINLKKEAGMTSHDAVFKLRKILGTKKIGHGGTLDPDVVGVLPIAVGKATRMVEFMQDEG 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDED-IRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA VI P DE + +A AS G I Q+PPM+SA+KV
Sbjct: 64 KIYEGEITLGYSTTTEDASGEVIAETPVLSPLDEKLVDEAIASLTGLITQIPPMYSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIERSLE-DRQ--NLIFRVTCSKGTYIRSLCAD 486
G K+Y+ AR G+ +E R+++I+QF+ + D Q FRV CSKGTYIR+L D
Sbjct: 124 NGRKLYEYARAGQEVERPERQVTIYQFERTSPISYDGQLARFTFRVKCSKGTYIRTLSVD 183
Query: 487 FGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
G+ LG AH++ L R S +DA +E+ E +
Sbjct: 184 LGEKLGYAAHMSHLTRTSAAGLQLEDALALEEIAEKV 220
>gi|254672177|emb|CBA05026.1| tRNA pseudouridine 55 synthase [Neisseria meningitidis alpha275]
Length = 316
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 87/209 (41%), Positives = 122/209 (58%), Gaps = 3/209 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L++KP+G +S T K RRL + +K GH G LDP+ATGLL VC G+ATK
Sbjct: 23 VLLLDKPEGLSSNTALQKARRLFRAEKAGHTGVLDPLATGLLPVCFGEATKFAQYLLDAD 82
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y+ +LGEA+ST DA+ +I + I + + A + G I QVPPMFSA+K
Sbjct: 83 KAYTATLKLGEASSTGDAEGEIIAAARAD-ISLAEFQTACQALTGNIRQVPPMFSALKHE 141
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKA 490
G+ +Y+ AR+G IE PR I+++ DI D + V CSKGTYIR+L D K
Sbjct: 142 GKPLYEYARKGIVIERKPRDITVYAIDIAEF--DSPKAVIDVRCSKGTYIRTLSEDIAKH 199
Query: 491 LGSCAHLTALRRDSIGQYSADDAWEFKEL 519
+G+ AHLTALRR ++ + + L
Sbjct: 200 IGTFAHLTALRRTETAGFTIAQSHTLEAL 228
>gi|418112548|ref|ZP_12749549.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA41538]
gi|353783828|gb|EHD64253.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA41538]
Length = 292
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 89/217 (41%), Positives = 127/217 (58%), Gaps = 4/217 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ + K G TS KLR+++ KK+GH GTLDP G+L + VGKAT++V+ Q
Sbjct: 4 IINLKKEAGMTSHDAVFKLRKILGTKKIGHGGTLDPDVVGVLPIAVGKATRMVEFMQDEG 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDED-IRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V+ P DE + +A AS G I Q+PPM+SA+KV
Sbjct: 64 KIYEGEITLGYSTTTEDASGEVVAETPVLSPLDEKLVDEAIASLTGPITQIPPMYSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIERSLE-DRQ--NLIFRVTCSKGTYIRSLCAD 486
G K+Y+ AR G+ +E R+++I+QF+ + D Q FRV CSKGTYIR+L D
Sbjct: 124 NGRKLYEYARAGQEVERPERQVTIYQFERTSPISYDGQLARFTFRVKCSKGTYIRTLSVD 183
Query: 487 FGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
G+ LG AH++ L R S +DA +E+ E +
Sbjct: 184 LGEKLGYAAHMSHLTRTSAAGLQLEDALSLEEIAEKV 220
>gi|357059437|ref|ZP_09120279.1| hypothetical protein HMPREF9334_01996 [Selenomonas infelix ATCC
43532]
gi|355371514|gb|EHG18858.1| hypothetical protein HMPREF9334_01996 [Selenomonas infelix ATCC
43532]
Length = 291
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 87/209 (41%), Positives = 122/209 (58%), Gaps = 1/209 (0%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
V KP G +S V +RR+ K K+VGHAGTLDP A G+L V +G+A +LV+ +G K Y
Sbjct: 7 VLKPTGLSSHDVVDIVRRIFKQKRVGHAGTLDPAAAGILPVALGRAARLVEYMEGADKSY 66
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHI-KDEDIRKAAASFRGEIWQVPPMFSAIKVGGE 432
G AT T D VI+R + +E++R F GEI Q PP +SAIKVGG+
Sbjct: 67 RAEIAFGYATDTGDVYGEVIERVENPMLPSEEELRSVLGKFVGEIEQTPPAYSAIKVGGQ 126
Query: 433 KMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKALG 492
+ YD AR+G ++E+ R + I + D+ + ++ V C+KGTYIRSLC D G ALG
Sbjct: 127 RAYDLARQGTAVEMRARTVRIDRLDLVHADAAHARILVDVDCAKGTYIRSLCTDIGTALG 186
Query: 493 SCAHLTALRRDSIGQYSADDAWEFKELEE 521
A + L R +G + D++ +EL E
Sbjct: 187 LPATMRFLLRTRVGGFMLTDSYTLEELAE 215
>gi|417694125|ref|ZP_12343313.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA47901]
gi|421298646|ref|ZP_15749334.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA60080]
gi|332203062|gb|EGJ17130.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA47901]
gi|395902602|gb|EJH13535.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA60080]
Length = 292
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 89/217 (41%), Positives = 127/217 (58%), Gaps = 4/217 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ + K G TS KLR+++ KK+GH GTLDP G+L + VGKAT++V+ Q
Sbjct: 4 IINLKKEAGMTSHDAVFKLRKILGTKKIGHGGTLDPDVVGVLPIAVGKATRMVEFMQDEG 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDED-IRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V+ P DE + +A AS G I Q+PPM+SA+KV
Sbjct: 64 KIYEGEITLGYSTTTEDASGEVVAETPVLSPLDEKLVDEAIASLTGPITQIPPMYSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIERSLE-DRQ--NLIFRVTCSKGTYIRSLCAD 486
G K+Y+ AR G+ +E R+++I+QF+ + D Q FRV CSKGTYIR+L D
Sbjct: 124 NGRKLYEYARAGQEVERPERQVTIYQFERTSPISYDGQLARFTFRVKCSKGTYIRTLSVD 183
Query: 487 FGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
G+ LG AH++ L R S +DA +E+ E +
Sbjct: 184 LGEKLGYAAHMSHLTRTSAAGLQLEDALTLEEIAEKV 220
>gi|168484964|ref|ZP_02709909.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae CDC1873-00]
gi|168486535|ref|ZP_02711043.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae CDC1087-00]
gi|417696402|ref|ZP_12345581.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA47368]
gi|418091840|ref|ZP_12728982.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA44452]
gi|418107633|ref|ZP_12744671.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA41410]
gi|418110183|ref|ZP_12747206.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA49447]
gi|418162264|ref|ZP_12798949.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA17328]
gi|418169234|ref|ZP_12805877.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA19077]
gi|418185009|ref|ZP_12821553.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA47283]
gi|418218950|ref|ZP_12845617.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae NP127]
gi|418221264|ref|ZP_12847918.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA47751]
gi|418238773|ref|ZP_12865327.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae
NorthCarolina6A-23]
gi|419423038|ref|ZP_13963253.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA43264]
gi|419460043|ref|ZP_13999973.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA02270]
gi|419462368|ref|ZP_14002275.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA02714]
gi|419488409|ref|ZP_14028162.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA44386]
gi|419509792|ref|ZP_14049436.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae NP141]
gi|419525948|ref|ZP_14065510.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA14373]
gi|419530002|ref|ZP_14069533.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA40028]
gi|421215513|ref|ZP_15672434.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae 2070109]
gi|421234189|ref|ZP_15690809.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae 2061617]
gi|172041900|gb|EDT49946.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae CDC1873-00]
gi|183570458|gb|EDT90986.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae CDC1087-00]
gi|332201677|gb|EGJ15747.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA47368]
gi|353763940|gb|EHD44490.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA44452]
gi|353779816|gb|EHD60280.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA41410]
gi|353782386|gb|EHD62820.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA49447]
gi|353827937|gb|EHE08083.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA17328]
gi|353834419|gb|EHE14520.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA19077]
gi|353849328|gb|EHE29334.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA47283]
gi|353875605|gb|EHE55457.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae NP127]
gi|353876187|gb|EHE56037.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA47751]
gi|353894138|gb|EHE73882.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae
NorthCarolina6A-23]
gi|379532018|gb|EHY97250.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA02270]
gi|379532199|gb|EHY97429.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA02714]
gi|379558208|gb|EHZ23244.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA14373]
gi|379574742|gb|EHZ39680.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA40028]
gi|379587564|gb|EHZ52412.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA43264]
gi|379590524|gb|EHZ55362.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae GA44386]
gi|379632985|gb|EHZ97554.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae NP141]
gi|395579720|gb|EJG40215.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae 2070109]
gi|395601137|gb|EJG61286.1| tRNA pseudouridine synthase B [Streptococcus pneumoniae 2061617]
Length = 292
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 89/217 (41%), Positives = 127/217 (58%), Gaps = 4/217 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ + K G TS KLR+++ KK+GH GTLDP G+L + VGKAT++V+ Q
Sbjct: 4 IINLKKEAGMTSHDAVFKLRKILGTKKIGHGGTLDPDVVGVLPIAVGKATRMVEFMQDEG 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDED-IRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V+ P DE + +A AS G I Q+PPM+SA+KV
Sbjct: 64 KIYEGEITLGYSTTTEDASGEVVAETPVLSPLDEKLVDEAIASLTGPITQIPPMYSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIERSLE-DRQ--NLIFRVTCSKGTYIRSLCAD 486
G K+Y+ AR G+ +E R+++I+QF+ + D Q FRV CSKGTYIR+L D
Sbjct: 124 NGRKLYEYARAGQEVERPERQVTIYQFERTSPISYDGQLARFTFRVKCSKGTYIRTLSVD 183
Query: 487 FGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
G+ LG AH++ L R S +DA +E+ E +
Sbjct: 184 LGEKLGYAAHMSHLTRTSAAGLQLEDALTLEEIAEKV 220
>gi|335043385|ref|ZP_08536412.1| pseudouridine synthase [Methylophaga aminisulfidivorans MP]
gi|333789999|gb|EGL55881.1| pseudouridine synthase [Methylophaga aminisulfidivorans MP]
Length = 308
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 88/218 (40%), Positives = 123/218 (56%), Gaps = 2/218 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+++KP G +S + +++RL KK GH G+LDP+ATG+L VC+G ATKL
Sbjct: 14 IVIIDKPTGHSSNHILQRVKRLFDAKKAGHTGSLDPLATGVLPVCLGDATKLSSYLLDAD 73
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y +LG T + D+D VI P ++ + + F GEI QVPPMFSA+K
Sbjct: 74 KQYLVTCQLGIVTDSGDSDGNVINEMPVPEFNEDTLSQVTQQFLGEIEQVPPMFSALKHQ 133
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKA 490
G+ +Y AR+G +E RRI I+ DI DR L R CSKGTYIR+L D A
Sbjct: 134 GQPLYKLARQGIDVERKARRIFIYAIDIIDCQSDRFTLSVR--CSKGTYIRTLVEDISHA 191
Query: 491 LGSCAHLTALRRDSIGQYSADDAWEFKELEEAITKNYF 528
LG+ H+ LRR ++ Y +A + L+E K+ F
Sbjct: 192 LGTGGHVIMLRRTAVAGYDLSEAITVETLQEMADKDGF 229
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.315 0.134 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,719,815,391
Number of Sequences: 23463169
Number of extensions: 390979159
Number of successful extensions: 1247161
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 4917
Number of HSP's successfully gapped in prelim test: 957
Number of HSP's that attempted gapping in prelim test: 1221956
Number of HSP's gapped (non-prelim): 13417
length of query: 528
length of database: 8,064,228,071
effective HSP length: 147
effective length of query: 381
effective length of database: 8,910,109,524
effective search space: 3394751728644
effective search space used: 3394751728644
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 79 (35.0 bits)