BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009707
(528 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A0JUU8|TRUB_ARTS2 tRNA pseudouridine synthase B OS=Arthrobacter sp. (strain FB24)
GN=truB PE=3 SV=1
Length = 306
Score = 204 bits (518), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 98/215 (45%), Positives = 136/215 (63%), Gaps = 4/215 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP+GWTS V G++RRL +KVGHAGTLDPMATG+L++ + KAT+L+ G
Sbjct: 5 LVIVDKPQGWTSHDVVGRMRRLAGTRKVGHAGTLDPMATGVLVLGINKATRLLTYIVGTS 64
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y+ RLGE+T T DA+ V+ + + IR A A+ GEI QVP SAIKV
Sbjct: 65 KTYTATIRLGESTVTDDAEGEVVSSHSAAAVTEGAIRAAVAALTGEIQQVPSSVSAIKVN 124
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIF----RVTCSKGTYIRSLCAD 486
GE+ Y + R GE ++L+ R ++I +FD+ +R + V CS GTYIR+L D
Sbjct: 125 GERAYARVRSGEDVKLAARPVTIHRFDVHAVRPERAGAVLDVDVTVECSSGTYIRALARD 184
Query: 487 FGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
G+ALG+ HLTALRR +G Y+ D A ++L E
Sbjct: 185 LGEALGTGGHLTALRRTQVGPYTLDQARTLEQLAE 219
>sp|Q9RB36|TRUB_FLAJ1 tRNA pseudouridine synthase B OS=Flavobacterium johnsoniae (strain
ATCC 17061 / DSM 2064 / UW101) GN=truB PE=3 SV=1
Length = 229
Score = 201 bits (510), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 102/222 (45%), Positives = 139/222 (62%), Gaps = 9/222 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVK-------KVGHAGTLDPMATGLLIVCVGKATK 361
G ++L++KP W+SF KL+ L+ K K+GHAGTLDP+ATGLL++C GK TK
Sbjct: 9 GQVLLIDKPLKWSSFQAVNKLKYLLINKVGLPKKFKIGHAGTLDPLATGLLLICTGKFTK 68
Query: 362 LVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVP 421
+ QG K Y+G F +G T ++D ++ + Q P EHI + I + F GEI Q P
Sbjct: 69 KISELQGQAKEYTGTFYIGATTPSYDLETEIDQTFPTEHINEVLIHETVKQFLGEIDQKP 128
Query: 422 PMFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIR 481
P+FSAIK G ++Y+ AR GESIE+ R+ +I +F+I R + FRV CSKGTYIR
Sbjct: 129 PIFSAIKKDGVRLYEHARAGESIEIESRKTTIHEFEITRI--ALPEIDFRVVCSKGTYIR 186
Query: 482 SLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
SL DFGKA+ S +HLT LRR IG Y +A + EE++
Sbjct: 187 SLAYDFGKAMNSGSHLTVLRRTKIGDYDVKNAIDITLFEESL 228
>sp|Q47RU8|TRUB_THEFY tRNA pseudouridine synthase B OS=Thermobifida fusca (strain YX)
GN=truB PE=3 SV=1
Length = 293
Score = 192 bits (488), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 96/220 (43%), Positives = 134/220 (60%), Gaps = 6/220 (2%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP GWTS V ++RRL ++VGHAGTLDPMATG+L+V VGKAT+L+
Sbjct: 5 VVIVDKPAGWTSHDVVARVRRLAGTRRVGHAGTLDPMATGVLVVGVGKATRLLGYLALTE 64
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y RLG++T+T DA+ +++R P +HI + + + G I QVPP SA+KV
Sbjct: 65 KVYEATIRLGQSTTTDDAEGELLERRPADHIDEAAVHAGTRALTGVIHQVPPQVSAVKVR 124
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIE--RSLEDRQNLIF----RVTCSKGTYIRSLC 484
G++ Y +AR GE++EL R +++ +F + R ++ RVTCS GTYIRSL
Sbjct: 125 GQRAYRRARAGETVELKAREVTVHEFTVTGFRRVDSPDGAFVDVDARVTCSSGTYIRSLA 184
Query: 485 ADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAIT 524
D G LG HLTALRR +G Y+ + A EL T
Sbjct: 185 RDLGADLGVGGHLTALRRTRVGPYTVEQAATLDELAAEFT 224
>sp|A1R520|TRUB_ARTAT tRNA pseudouridine synthase B OS=Arthrobacter aurescens (strain
TC1) GN=truB PE=3 SV=1
Length = 311
Score = 191 bits (484), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 96/207 (46%), Positives = 128/207 (61%), Gaps = 4/207 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP+GWTS V G++RRL +KVGHAGTLDPMATG+L++ + KAT+L+ G
Sbjct: 5 LVIVDKPQGWTSHDVVGRMRRLAGTRKVGHAGTLDPMATGVLVLGINKATRLLTYIVGTS 64
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y+ RLGE T T DA+ V + HI D+ + A+ G I QVP SAIKV
Sbjct: 65 KTYTATIRLGETTITDDAEGEVTEARTAAHITDDAVAVGVAALTGPIQQVPSSVSAIKVN 124
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLE-DRQNLI---FRVTCSKGTYIRSLCAD 486
GE+ Y + R GE ++L+ R ++I +FD+ D ++ V CS GTYIR+L D
Sbjct: 125 GERSYARVRSGEEVKLAARPVTIHRFDVHSITRIDGGRVVDVDVTVECSSGTYIRALARD 184
Query: 487 FGKALGSCAHLTALRRDSIGQYSADDA 513
G ALG HLTALRR +G YS D A
Sbjct: 185 LGNALGIGGHLTALRRTQVGPYSLDQA 211
>sp|B1MD72|TRUB_MYCA9 tRNA pseudouridine synthase B OS=Mycobacterium abscessus (strain
ATCC 19977 / DSM 44196) GN=truB PE=3 SV=1
Length = 298
Score = 188 bits (478), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 96/217 (44%), Positives = 133/217 (61%), Gaps = 3/217 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G TS V + RR+ +KVGHAGTLDPMATG+L++ + +ATK++
Sbjct: 10 LVIVDKPAGMTSHDVVSRCRRIFSTRKVGHAGTLDPMATGVLVIGIERATKIMGLLTLTT 69
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y+ R G++TST DA+ V+Q H+ + DI A A RG+I QVP SAIKV
Sbjct: 70 KSYAATIRFGQSTSTDDAEGEVLQTISASHLTEVDIEAAVAGLRGDIAQVPSSVSAIKVD 129
Query: 431 GEKMYDKARRGESIELSPRRISIFQFD---IERSLEDRQNLIFRVTCSKGTYIRSLCADF 487
G++ Y AR G+S+EL+ R + I +FD + S ED ++ + CS GTYIR+L D
Sbjct: 130 GQRAYKLAREGQSVELAARPVRISRFDVLAVRGSGEDLIDVDVEIDCSSGTYIRALARDA 189
Query: 488 GKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAIT 524
G ALG HLTALRR +G + D A +EL + T
Sbjct: 190 GAALGVGGHLTALRRTRVGDFGLDRARTLEELADGAT 226
>sp|Q1BA81|TRUB_MYCSS tRNA pseudouridine synthase B OS=Mycobacterium sp. (strain MCS)
GN=truB PE=3 SV=1
Length = 297
Score = 187 bits (475), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 94/209 (44%), Positives = 130/209 (62%), Gaps = 2/209 (0%)
Query: 315 NKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYS 374
+KP G TS V G+ RR+ +KVGHAGTLDPMATG+L+V + +ATKL+ K Y
Sbjct: 14 DKPAGMTSHDVVGRCRRIFGTRKVGHAGTLDPMATGVLVVGIDRATKLLGLLTATDKSYE 73
Query: 375 GVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEKM 434
RLG+ T+T DA+ V++ P I DE I A A+ RGEI QVP SAIKVGG++
Sbjct: 74 ATIRLGQTTTTEDAEGDVVETTPATGITDEQIGHAVAALRGEIDQVPSAVSAIKVGGQRA 133
Query: 435 YDKARRGESIELSPRRISIFQFDIE--RSLEDRQNLIFRVTCSKGTYIRSLCADFGKALG 492
Y AR G+++EL+ RR+ I +F++ R ++ ++ V CS GTYIR+L D G LG
Sbjct: 134 YKLAREGQTVELAARRVRIDRFEVLAIRRVDGFVDVDVAVDCSSGTYIRALARDVGVTLG 193
Query: 493 SCAHLTALRRDSIGQYSADDAWEFKELEE 521
HLT LRR +G++ D+A+ L +
Sbjct: 194 VGGHLTLLRRTRVGRFGLDEAYPLDALAD 222
>sp|A1UET1|TRUB_MYCSK tRNA pseudouridine synthase B OS=Mycobacterium sp. (strain KMS)
GN=truB PE=3 SV=1
Length = 297
Score = 187 bits (475), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 94/209 (44%), Positives = 130/209 (62%), Gaps = 2/209 (0%)
Query: 315 NKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYS 374
+KP G TS V G+ RR+ +KVGHAGTLDPMATG+L+V + +ATKL+ K Y
Sbjct: 14 DKPAGMTSHDVVGRCRRIFGTRKVGHAGTLDPMATGVLVVGIDRATKLLGLLTATDKSYE 73
Query: 375 GVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEKM 434
RLG+ T+T DA+ V++ P I DE I A A+ RGEI QVP SAIKVGG++
Sbjct: 74 ATIRLGQTTTTEDAEGDVVETTPATGITDEQIGHAVAALRGEIDQVPSAVSAIKVGGQRA 133
Query: 435 YDKARRGESIELSPRRISIFQFDIE--RSLEDRQNLIFRVTCSKGTYIRSLCADFGKALG 492
Y AR G+++EL+ RR+ I +F++ R ++ ++ V CS GTYIR+L D G LG
Sbjct: 134 YKLAREGQTVELAARRVRIDRFEVLAIRRVDGFVDVDVAVDCSSGTYIRALARDVGVTLG 193
Query: 493 SCAHLTALRRDSIGQYSADDAWEFKELEE 521
HLT LRR +G++ D+A+ L +
Sbjct: 194 VGGHLTLLRRTRVGRFGLDEAYPLDALAD 222
>sp|A3PY88|TRUB_MYCSJ tRNA pseudouridine synthase B OS=Mycobacterium sp. (strain JLS)
GN=truB PE=3 SV=1
Length = 297
Score = 187 bits (475), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 94/209 (44%), Positives = 130/209 (62%), Gaps = 2/209 (0%)
Query: 315 NKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYS 374
+KP G TS V G+ RR+ +KVGHAGTLDPMATG+L+V + +ATKL+ K Y
Sbjct: 14 DKPAGMTSHDVVGRCRRIFGTRKVGHAGTLDPMATGVLVVGIDRATKLLGLLTATDKSYE 73
Query: 375 GVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEKM 434
RLG+ T+T DA+ V++ P I DE I A A+ RGEI QVP SAIKVGG++
Sbjct: 74 ATIRLGQTTTTEDAEGDVVETTPATGITDEQIGHAVAALRGEIDQVPSAVSAIKVGGQRA 133
Query: 435 YDKARRGESIELSPRRISIFQFDIE--RSLEDRQNLIFRVTCSKGTYIRSLCADFGKALG 492
Y AR G+++EL+ RR+ I +F++ R ++ ++ V CS GTYIR+L D G LG
Sbjct: 134 YKLAREGQTVELAARRVRIDRFEVLAIRRVDGFVDVDVAVDCSSGTYIRALARDVGVTLG 193
Query: 493 SCAHLTALRRDSIGQYSADDAWEFKELEE 521
HLT LRR +G++ D+A+ L +
Sbjct: 194 VGGHLTLLRRTRVGRFGLDEAYPLDALAD 222
>sp|P62190|TRUB_MYCTU tRNA pseudouridine synthase B OS=Mycobacterium tuberculosis GN=truB
PE=1 SV=1
Length = 298
Score = 184 bits (467), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 95/214 (44%), Positives = 131/214 (61%), Gaps = 4/214 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+++KP G TS V G+ RR+ ++VGHAGTLDPMATG+L++ + +ATK++
Sbjct: 8 IVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILGLLTAAP 67
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y+ RLG+ TST DA+ V+Q P +H+ E I A RGEI QVP SAIKVG
Sbjct: 68 KSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSSVSAIKVG 127
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLI---FRVTCSKGTYIRSLCADF 487
G + Y AR+G S++L R I I +F++ + R LI + CS GTYIR+L D
Sbjct: 128 GRRAYRLARQGRSVQLEARPIRIDRFELL-AARRRDQLIDIDVEIDCSSGTYIRALARDL 186
Query: 488 GKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
G ALG H+TALRR +G++ D A +L E
Sbjct: 187 GDALGVGGHVTALRRTRVGRFELDQARSLDDLAE 220
>sp|A5U6E6|TRUB_MYCTA tRNA pseudouridine synthase B OS=Mycobacterium tuberculosis (strain
ATCC 25177 / H37Ra) GN=truB PE=3 SV=1
Length = 298
Score = 184 bits (467), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 95/214 (44%), Positives = 131/214 (61%), Gaps = 4/214 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+++KP G TS V G+ RR+ ++VGHAGTLDPMATG+L++ + +ATK++
Sbjct: 8 IVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILGLLTAAP 67
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y+ RLG+ TST DA+ V+Q P +H+ E I A RGEI QVP SAIKVG
Sbjct: 68 KSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSSVSAIKVG 127
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLI---FRVTCSKGTYIRSLCADF 487
G + Y AR+G S++L R I I +F++ + R LI + CS GTYIR+L D
Sbjct: 128 GRRAYRLARQGRSVQLEARPIRIDRFELL-AARRRDQLIDIDVEIDCSSGTYIRALARDL 186
Query: 488 GKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
G ALG H+TALRR +G++ D A +L E
Sbjct: 187 GDALGVGGHVTALRRTRVGRFELDQARSLDDLAE 220
>sp|A1KMD6|TRUB_MYCBP tRNA pseudouridine synthase B OS=Mycobacterium bovis (strain BCG /
Pasteur 1173P2) GN=truB PE=3 SV=1
Length = 298
Score = 184 bits (467), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 95/214 (44%), Positives = 131/214 (61%), Gaps = 4/214 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+++KP G TS V G+ RR+ ++VGHAGTLDPMATG+L++ + +ATK++
Sbjct: 8 IVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILGLLTAAP 67
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y+ RLG+ TST DA+ V+Q P +H+ E I A RGEI QVP SAIKVG
Sbjct: 68 KSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSSVSAIKVG 127
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLI---FRVTCSKGTYIRSLCADF 487
G + Y AR+G S++L R I I +F++ + R LI + CS GTYIR+L D
Sbjct: 128 GRRAYRLARQGRSVQLEARPIRIDRFELL-AARRRDQLIDIDVEIDCSSGTYIRALARDL 186
Query: 488 GKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
G ALG H+TALRR +G++ D A +L E
Sbjct: 187 GDALGVGGHVTALRRTRVGRFELDQARSLDDLAE 220
>sp|P62189|TRUB_MYCBO tRNA pseudouridine synthase B OS=Mycobacterium bovis (strain ATCC
BAA-935 / AF2122/97) GN=truB PE=3 SV=1
Length = 298
Score = 184 bits (467), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 95/214 (44%), Positives = 131/214 (61%), Gaps = 4/214 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+++KP G TS V G+ RR+ ++VGHAGTLDPMATG+L++ + +ATK++
Sbjct: 8 IVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILGLLTAAP 67
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y+ RLG+ TST DA+ V+Q P +H+ E I A RGEI QVP SAIKVG
Sbjct: 68 KSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSSVSAIKVG 127
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLI---FRVTCSKGTYIRSLCADF 487
G + Y AR+G S++L R I I +F++ + R LI + CS GTYIR+L D
Sbjct: 128 GRRAYRLARQGRSVQLEARPIRIDRFELL-AARRRDQLIDIDVEIDCSSGTYIRALARDL 186
Query: 488 GKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
G ALG H+TALRR +G++ D A +L E
Sbjct: 187 GDALGVGGHVTALRRTRVGRFELDQARSLDDLAE 220
>sp|A6LEL7|TRUB_PARD8 tRNA pseudouridine synthase B OS=Parabacteroides distasonis (strain
ATCC 8503 / DSM 20701 / NCTC 11152) GN=truB PE=3 SV=1
Length = 235
Score = 183 bits (465), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 97/224 (43%), Positives = 137/224 (61%), Gaps = 8/224 (3%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR----RLVKVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G ++ NKP WTSF + K R R +KVKK VGHAGTLDP+ATG++IVC G+ATK
Sbjct: 6 GEILYFNKPLTWTSFDLVNKFRYKLSRKLKVKKIKVGHAGTLDPLATGVMIVCTGRATKR 65
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
+D +Q K Y +LGE T ++D + + P EHI E + + +F G I Q+PP
Sbjct: 66 IDEFQYQTKEYIATLKLGETTPSFDLEKEIDAVYPTEHITRELVEEVLKTFVGTIQQIPP 125
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRS 482
+FSA KV G++ Y+ AR+GE +EL + + I + ++ D + RV CSKGTYIR+
Sbjct: 126 VFSACKVEGKRAYELARKGEEVELKSKTLVIDELELLEC--DLPVIKIRVVCSKGTYIRA 183
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAITKN 526
L D GKALGS AHL L R IG+ + D +E+++ + +N
Sbjct: 184 LARDIGKALGSGAHLIGLERTRIGEVTLDMCMSPEEIDDFLEQN 227
>sp|A0QIX1|TRUB_MYCA1 tRNA pseudouridine synthase B OS=Mycobacterium avium (strain 104)
GN=truB PE=3 SV=1
Length = 309
Score = 182 bits (463), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 92/219 (42%), Positives = 133/219 (60%), Gaps = 2/219 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G TS V G+ RR+ ++VGHAGTLDPMATG+L++ V +ATK++
Sbjct: 6 LVVVDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVLGVERATKILGLLTAAA 65
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K YS RLG+ATST DA+ V++ H+ + I A RG+I QVP SAIKV
Sbjct: 66 KSYSATIRLGQATSTDDAEGDVVRSVDARHLTSQAIEAAVGGLRGDIHQVPSTVSAIKVA 125
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIE--RSLEDRQNLIFRVTCSKGTYIRSLCADFG 488
G++ Y R G+++EL R + I +F++ R+ + ++ V CS GTY+R+L D G
Sbjct: 126 GKRAYKLVREGQAVELPARPVRIDRFEVRDLRAAGECVDVDVEVDCSSGTYVRALARDLG 185
Query: 489 KALGSCAHLTALRRDSIGQYSADDAWEFKELEEAITKNY 527
ALG HLTALRR +G++ + A+ EL E +Y
Sbjct: 186 AALGVGGHLTALRRTRVGRFGLEQAYGLDELAECPRLSY 224
>sp|C3PH13|TRUB_CORA7 tRNA pseudouridine synthase B OS=Corynebacterium aurimucosum
(strain ATCC 700975 / DSM 44827 / CN-1) GN=truB PE=3
SV=1
Length = 297
Score = 182 bits (463), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 94/214 (43%), Positives = 129/214 (60%), Gaps = 2/214 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G TS V GKLRR + +KVGHAGTLDPMATG+L+V + + TK +
Sbjct: 10 LVVVDKPAGMTSHDVVGKLRRFFRTRKVGHAGTLDPMATGVLVVGIERGTKFLAHMVAST 69
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y RLG AT T DA+ EP ++D I + A+ G+I Q P SAIKV
Sbjct: 70 KAYDATIRLGTATHTDDAEGEATWGEPATAVEDSAIAREIAALTGDIMQRPAAVSAIKVD 129
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQ--NLIFRVTCSKGTYIRSLCADFG 488
G++ +++ R GE +EL R +++ +FDI + + + +L V CS GTYIRSL D G
Sbjct: 130 GKRAHERVRAGEEVELPARPVTVSRFDILATRREGEFIDLDVSVACSSGTYIRSLARDLG 189
Query: 489 KALGSCAHLTALRRDSIGQYSADDAWEFKELEEA 522
+ALG HLTALRR +G + DDA LE++
Sbjct: 190 EALGVGGHLTALRRTEVGPFRLDDAHPLDALEDS 223
>sp|Q73VW3|TRUB_MYCPA tRNA pseudouridine synthase B OS=Mycobacterium paratuberculosis
(strain ATCC BAA-968 / K-10) GN=truB PE=3 SV=1
Length = 293
Score = 179 bits (455), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 92/219 (42%), Positives = 131/219 (59%), Gaps = 2/219 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G TS V G+ RR+ ++VGHAGTLDPMATG+L++ V +ATK++
Sbjct: 6 LVVVDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVLGVERATKILGLLTAAA 65
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K YS RLG+ATST DA+ V + H+ + I A RG+I QVP SAIKV
Sbjct: 66 KSYSATIRLGQATSTDDAEGDVARSVDARHLTSQAIEAAVGGLRGDIHQVPSTVSAIKVA 125
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIE--RSLEDRQNLIFRVTCSKGTYIRSLCADFG 488
G++ Y R G+++EL R + I +F++ R+ ++ V CS GTY+R+L D G
Sbjct: 126 GKRAYKLVREGQAVELPARPVRIDRFEVRGLRAAGACVDVDVEVDCSSGTYVRALARDLG 185
Query: 489 KALGSCAHLTALRRDSIGQYSADDAWEFKELEEAITKNY 527
ALG HLTALRR +G++ + A+ EL E +Y
Sbjct: 186 AALGVGGHLTALRRTRVGRFGLEQAYGLDELAECPRLSY 224
>sp|Q9Z5I4|TRUB_MYCLE tRNA pseudouridine synthase B OS=Mycobacterium leprae (strain TN)
GN=truB PE=3 SV=1
Length = 320
Score = 179 bits (454), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 93/218 (42%), Positives = 127/218 (58%), Gaps = 7/218 (3%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+++KP G TS V + RR+ ++VGHAGTLDPMATG+L++ V +ATK++ G
Sbjct: 14 IVVIDKPSGMTSHDVVARCRRIFCTRRVGHAGTLDPMATGVLVLGVDRATKILGLLAGAS 73
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y RLG+ TST DA+ ++Q H+ DE I A RG+I QVP SAIKV
Sbjct: 74 KEYVATIRLGQTTSTEDAEGELLQCVSARHVTDEAIATAIGRLRGDIKQVPSAVSAIKVD 133
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDI-------ERSLEDRQNLIFRVTCSKGTYIRSL 483
G + Y R G +EL R + I +F++ E L D +L V CS GTYIR+L
Sbjct: 134 GRRAYRLVREGHVVELQARPVRIDRFEVLAVRPGPEVGLADVIDLDVEVECSSGTYIRAL 193
Query: 484 CADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
D G A G HLT+LRR +G++ D AW ++L E
Sbjct: 194 ARDLGDAFGVGGHLTSLRRTRVGRFELDQAWSLEDLAE 231
>sp|Q650L8|TRUB_BACFR tRNA pseudouridine synthase B OS=Bacteroides fragilis (strain
YCH46) GN=truB PE=3 SV=1
Length = 233
Score = 179 bits (453), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 95/204 (46%), Positives = 126/204 (61%), Gaps = 8/204 (3%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR----RLVKVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G ++ NKP GWTSF V G R R +KVKK VGHAGTLDP+ATG++IVC GKATK
Sbjct: 6 GEVLYFNKPLGWTSFKVVGHARYHMCRRMKVKKLKVGHAGTLDPLATGVMIVCTGKATKR 65
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ +Q K Y +LG T ++D + + P EHI E + K +F GEI Q+PP
Sbjct: 66 IEEFQYHTKEYVATIQLGATTPSYDLEHEIDATYPTEHITRELVEKTLKTFVGEIQQIPP 125
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRS 482
FSA KV G + YD AR+G+ +EL P+ + I + ++ + + RV CSKGTYIR+
Sbjct: 126 AFSACKVDGARAYDLARKGQEVELKPKLLVIDEIELLEC--NLPEIKIRVVCSKGTYIRA 183
Query: 483 LCADFGKALGSCAHLTALRRDSIG 506
L D G+AL S AHLT L R +G
Sbjct: 184 LARDIGEALQSGAHLTGLIRTRVG 207
>sp|Q5LJ29|TRUB_BACFN tRNA pseudouridine synthase B OS=Bacteroides fragilis (strain ATCC
25285 / NCTC 9343) GN=truB PE=3 SV=1
Length = 233
Score = 179 bits (453), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 95/204 (46%), Positives = 126/204 (61%), Gaps = 8/204 (3%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR----RLVKVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G ++ NKP GWTSF V G R R +KVKK VGHAGTLDP+ATG++IVC GKATK
Sbjct: 6 GEVLYFNKPLGWTSFKVVGHARYHMCRRMKVKKLKVGHAGTLDPLATGVMIVCTGKATKR 65
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ +Q K Y +LG T ++D + + P EHI E + K +F GEI Q+PP
Sbjct: 66 IEEFQYHTKEYVATIQLGATTPSYDLEHEIDATYPTEHITRELVEKTLKTFVGEIQQIPP 125
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRS 482
FSA KV G + YD AR+G+ +EL P+ + I + ++ + + RV CSKGTYIR+
Sbjct: 126 AFSACKVDGARAYDLARKGQEVELKPKLLVIDEIELLEC--NLPEIKIRVVCSKGTYIRA 183
Query: 483 LCADFGKALGSCAHLTALRRDSIG 506
L D G+AL S AHLT L R +G
Sbjct: 184 LARDIGEALQSGAHLTGLIRTRVG 207
>sp|Q5L0I5|TRUB_GEOKA tRNA pseudouridine synthase B OS=Geobacillus kaustophilus (strain
HTA426) GN=truB PE=3 SV=1
Length = 285
Score = 178 bits (451), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 92/215 (42%), Positives = 134/215 (62%), Gaps = 5/215 (2%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L+NKPKG TS K+RRL+ VKK GH GTLDP +G+L +C+GKAT++ + G
Sbjct: 4 VLLLNKPKGMTSHDCVAKVRRLLGVKKAGHTGTLDPNVSGVLPICLGKATRIAEFLTGTT 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG AT+T DAD +I P + I +I S GEI Q PPM+SA+KV
Sbjct: 64 KTYEGKVTLGAATTTEDADGDIIAARPVDRPIARAEIEAVFDSLTGEIEQTPPMYSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDI----ERSLEDRQNLIFRVTCSKGTYIRSLCA 485
GG+K+Y+ AR G +E RR++I++ ++ E+ + + FRVTCSKGTY+R+L
Sbjct: 124 GGKKLYEYARAGIEVERPTRRVTIYELELLDEREQFFGETVSFRFRVTCSKGTYVRTLAV 183
Query: 486 DFGKALGSCAHLTALRRDSIGQYSADDAWEFKELE 520
G+ LG AH++ L R + G + +D F+++E
Sbjct: 184 MIGERLGYPAHMSDLIRTASGPFRLEDCVTFEDVE 218
>sp|B1ZX46|TRUB_OPITP tRNA pseudouridine synthase B OS=Opitutus terrae (strain DSM 11246
/ PB90-1) GN=truB PE=3 SV=1
Length = 241
Score = 176 bits (447), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 88/210 (41%), Positives = 127/210 (60%), Gaps = 2/210 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++LV+KP TS V +LRR + +K++GHAGTLDPMATGL+I+ +GKAT + +
Sbjct: 11 VLLVDKPTAHTSHDVVARLRRKLNMKRIGHAGTLDPMATGLMILLIGKATTISQYLTSLD 70
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y G LG+ T + DAD V+ P + +IR A A F G+ +Q PPM+SAIKV
Sbjct: 71 KEYEGTIELGKVTDSQDADGEVLSTLPVPPFTEAEIRAAMAGFMGDQYQTPPMYSAIKVD 130
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKA 490
G +Y AR+G +E PR I + F++ R + + FR+ C+KGTY+R++ D G+
Sbjct: 131 GVPLYKTARKGGEVEREPRFIRVSSFELTRFALPQFD--FRLRCTKGTYVRTIAHDLGQR 188
Query: 491 LGSCAHLTALRRDSIGQYSADDAWEFKELE 520
LG AHL ALRR + ++ DA +E
Sbjct: 189 LGCGAHLAALRRTATDKFKLADALTLDAIE 218
>sp|Q8A2U2|TRUB_BACTN tRNA pseudouridine synthase B OS=Bacteroides thetaiotaomicron
(strain ATCC 29148 / DSM 2079 / NCTC 10582 / E50 /
VPI-5482) GN=truB PE=3 SV=1
Length = 240
Score = 175 bits (443), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 97/226 (42%), Positives = 135/226 (59%), Gaps = 8/226 (3%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR----RLVKVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G ++ NKP GWTSF V G +R R + VKK VGHAGTLDP+ATG++I+C GKATK
Sbjct: 6 GEVLFFNKPLGWTSFKVVGHVRYHICRRIGVKKLKVGHAGTLDPLATGVMILCTGKATKR 65
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ +Q K Y RLG T ++D + + P HI E + + F G I QVPP
Sbjct: 66 IEEFQYHTKEYVATLRLGATTPSYDLEHEIDATYPTGHITRELVEETLTHFLGAIEQVPP 125
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFD-IERSLEDRQNLI-FRVTCSKGTYI 480
FSA V G++ Y+ AR+GE +EL +++ I + + +E L+D + I RV CSKGTYI
Sbjct: 126 AFSACMVDGKRAYELARKGEEVELKAKQLVIDEIELLECRLDDPEPTIRIRVVCSKGTYI 185
Query: 481 RSLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAITKN 526
R+L D G+AL S AHLT L R +G +D + + +E I +
Sbjct: 186 RALARDIGEALQSGAHLTELIRTRVGDVRLEDCLDPEHFKEWIDRQ 231
>sp|Q8FPB3|TRUB_COREF tRNA pseudouridine synthase B OS=Corynebacterium efficiens (strain
DSM 44549 / YS-314 / AJ 12310 / JCM 11189 / NBRC 100395)
GN=truB PE=3 SV=2
Length = 297
Score = 174 bits (442), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 90/216 (41%), Positives = 127/216 (58%), Gaps = 8/216 (3%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G TS V KLRR +KVGHAGTLDPMATG+L+V + + T+ +
Sbjct: 10 LVVVDKPAGMTSHDVVSKLRRAFSTRKVGHAGTLDPMATGVLVVGIERGTRFLAHLVATT 69
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y RLG +T+T D + V+ + DE I A S GEI Q P SAIK+
Sbjct: 70 KAYDATIRLGASTTTDDREGDVVFSADASTLDDEQITTAVTSLTGEIMQKPASVSAIKID 129
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQ-----NLIFRVTCSKGTYIRSLCA 485
G++ +++ R GE +++ R +++ FD+ LE R+ +L RV CS GTYIRSL
Sbjct: 130 GKRAHERVRDGEVVDIPARPVTVSVFDV---LEQRREGGFVDLDVRVHCSSGTYIRSLAR 186
Query: 486 DFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
D G ALG HLTALRR +G ++ +DA +L++
Sbjct: 187 DLGAALGVGGHLTALRRTEVGPFTLEDAIPLADLQD 222
>sp|Q5YSE0|TRUB_NOCFA tRNA pseudouridine synthase B OS=Nocardia farcinica (strain IFM
10152) GN=truB PE=3 SV=1
Length = 306
Score = 174 bits (441), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 89/217 (41%), Positives = 132/217 (60%), Gaps = 2/217 (0%)
Query: 307 PFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRY 366
P G +++V+K G TS V + R+++ +K+GHAGTLDPMATG+L++ V +ATKL+
Sbjct: 13 PLGGLLVVDKDGGMTSHDVVARCRKILGTRKIGHAGTLDPMATGVLVLGVERATKLLGLL 72
Query: 367 QGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSA 426
K Y+ RLG AT+T DA+ V+ P H+ D ++ A+ G+I QVP SA
Sbjct: 73 TLTTKAYTATIRLGSATTTDDAEGEVLTTVPAGHLGDAEVAAGVAALTGDIQQVPATVSA 132
Query: 427 IKVGGEKMYDKARRGESIELSPRRISIFQFDI--ERSLEDRQNLIFRVTCSKGTYIRSLC 484
IK+GGE+ Y + R GE +EL+ R +++ +F++ R + +L V CS GTY+R+L
Sbjct: 133 IKIGGERAYARHRAGEQVELAARPVTVSRFEVLARRDVAGFVDLDVVVECSSGTYVRALA 192
Query: 485 ADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
D G ALG HLTALRR +G ++ D A L +
Sbjct: 193 RDLGAALGVGGHLTALRRTRVGPFTLDHARTLDALAD 229
>sp|A4IME0|TRUB_GEOTN tRNA pseudouridine synthase B OS=Geobacillus thermodenitrificans
(strain NG80-2) GN=truB PE=3 SV=1
Length = 302
Score = 174 bits (441), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 90/218 (41%), Positives = 133/218 (61%), Gaps = 11/218 (5%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L+NKPKG TS K+RRL+ +KKVGH GTLDP +G+L +C+GKAT++ + G
Sbjct: 4 VLLLNKPKGMTSHDCVAKVRRLLGIKKVGHTGTLDPNVSGVLPICLGKATRIAEFLTGAT 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG ATST DAD +I + + I +I S G+I Q PPM+SA+KV
Sbjct: 64 KTYEGEVTLGAATSTEDADGDIIAVQTVDRTIARAEIEAVFRSLTGDIEQTPPMYSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLI-------FRVTCSKGTYIRS 482
G+K+Y+ AR G +E RR++I++ ++ L++R+ + FRV CSKGTY+R+
Sbjct: 124 NGKKLYEYARAGIEVERPTRRVTIYELEL---LDEREQFVGETVSFRFRVMCSKGTYVRT 180
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELE 520
L G+ LG AH++ L R + G + D +E+E
Sbjct: 181 LAVTIGERLGYPAHMSDLIRTASGPFQLADCVTLEEVE 218
>sp|Q732R2|TRUB_BACC1 tRNA pseudouridine synthase B OS=Bacillus cereus (strain ATCC
10987) GN=truB PE=3 SV=1
Length = 307
Score = 174 bits (441), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 89/218 (40%), Positives = 140/218 (64%), Gaps = 5/218 (2%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+VL++KPKG TS KLR++++ K++GH GTLDP TG+L +CVG+ATK+
Sbjct: 4 VVLLHKPKGMTSHDCIFKLRKILREKRIGHTGTLDPDVTGVLPICVGRATKIAQFLTSET 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V++ + + I +++ + A+ G I Q+PPMFSA+KV
Sbjct: 64 KTYEGEVTLGFSTTTEDASGEVVETKHVDRVITRKEVEEVLAALTGTIEQMPPMFSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDI--ERSLEDRQNLI--FRVTCSKGTYIRSLCA 485
G+K+Y+ AR G+ +E R I+I +F + ER + + +N+ FRVTCSKGTY+R+L
Sbjct: 124 NGKKLYEYARAGQEVERPVRTITIHEFVLLDEREVFEGENISFRFRVTCSKGTYVRTLAV 183
Query: 486 DFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
G+ LG +H++ L R + G++ +D F+E+EE +
Sbjct: 184 MIGEKLGFPSHMSHLVRTASGEFVLEDCISFEEIEENV 221
>sp|Q6AG41|TRUB_LEIXX tRNA pseudouridine synthase B OS=Leifsonia xyli subsp. xyli (strain
CTCB07) GN=truB PE=3 SV=1
Length = 302
Score = 174 bits (440), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 93/217 (42%), Positives = 127/217 (58%), Gaps = 5/217 (2%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L++KP GWTS V ++RRL +KVGHAGTLDPMATGLL++ + +T+L+ G
Sbjct: 8 LLLIDKPGGWTSHDVVARVRRLAGTRKVGHAGTLDPMATGLLVLGLNSSTRLLTYIVGAE 67
Query: 371 KGYSGVFRLGEATSTWDADSPVIQR---EPWEHIKDEDIRKAAASFRGEIWQVPPMFSAI 427
K Y G RLG AT+T D + +++R + + I + A+ GEI QVP SA+
Sbjct: 68 KEYVGTIRLGAATTTDDIEGEILERAEPAALAAVAESSIAEGIAALTGEIEQVPSAVSAV 127
Query: 428 KVGGEKMYDKARRGESIELSPRRISIFQFDI--ERSLEDRQNLIFRVTCSKGTYIRSLCA 485
KV G++ Y + R GE + L R +++ F + ER +D +L RV CS GTYIRSL
Sbjct: 128 KVDGKRAYARVRAGEEVVLPARAVTVSAFRLLSERREQDAIDLEVRVVCSSGTYIRSLAR 187
Query: 486 DFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEA 522
D G LG HL ALRR +G Y A E LE A
Sbjct: 188 DLGARLGVGGHLAALRRTRVGGYDVRRAHELATLEPA 224
>sp|P59873|TRUB_BACAN tRNA pseudouridine synthase B OS=Bacillus anthracis GN=truB PE=3
SV=1
Length = 307
Score = 173 bits (439), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 89/218 (40%), Positives = 141/218 (64%), Gaps = 5/218 (2%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+VL++KPKG TS KLR++++ K++GH GTLDP TG+L +CVG+ATK+
Sbjct: 4 VVLLHKPKGMTSHDCVFKLRKILREKRIGHTGTLDPDVTGVLPICVGRATKIAQFLTSET 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V++ + + I +++ +A A+ G I Q+PPMFSA+KV
Sbjct: 64 KTYEGEVTLGFSTTTEDASGEVVETKYVDRVITRKEVEEALATLTGTIEQMPPMFSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDI--ERSLEDRQNLI--FRVTCSKGTYIRSLCA 485
G+K+Y+ AR G+ +E R I+I +F + +R + + +N+ FRVTCSKGTY+R+L
Sbjct: 124 NGKKLYEYARAGQEVERPVRTITIHEFVLLDDREVFEGENISFRFRVTCSKGTYVRTLAV 183
Query: 486 DFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
G+ LG +H++ L R + G++ +D F+E+EE +
Sbjct: 184 MIGEKLGFPSHMSHLVRTASGEFLLEDCISFEEIEENV 221
>sp|A5N845|TRUB_CLOK5 tRNA pseudouridine synthase B OS=Clostridium kluyveri (strain ATCC
8527 / DSM 555 / NCIMB 10680) GN=truB PE=3 SV=1
Length = 289
Score = 173 bits (438), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 92/207 (44%), Positives = 129/207 (62%), Gaps = 3/207 (1%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
+NKP+G TSF V K+R ++K +KVGH GTLDPMA+G+L +CVG+ATK D K Y
Sbjct: 7 INKPEGMTSFDVVRKVRFMLKNEKVGHTGTLDPMASGVLPICVGRATKFADYMVESKKIY 66
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEK 433
RLG T T+D + V+ ++K +DI + SF+GEI QVPPM+SA+KV G +
Sbjct: 67 LAELRLGITTETYDREGSVVNTRGV-YLKKKDIIEEILSFQGEIEQVPPMYSALKVNGRR 125
Query: 434 MYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKALGS 493
+Y+ AR+G IE R+I+I+ DI + + F+VTCSKGTYIRSLC D G L
Sbjct: 126 LYELARKGIEIERKKRKITIYSIDIVNI--ELPYVSFKVTCSKGTYIRSLCNDIGNNLNC 183
Query: 494 CAHLTALRRDSIGQYSADDAWEFKELE 520
+ L+R S G ++ D+ + L+
Sbjct: 184 GGTMWNLKRLSTGNFNIADSIALEYLD 210
>sp|Q8XZV4|TRUB_RALSO tRNA pseudouridine synthase B OS=Ralstonia solanacearum (strain
GMI1000) GN=truB PE=3 SV=1
Length = 314
Score = 173 bits (438), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 95/214 (44%), Positives = 128/214 (59%), Gaps = 3/214 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L++KP GW+S + +RL+ KK GH GTLDP+ATGLL +C G+ATK
Sbjct: 20 VLLLDKPIGWSSNDALIRAKRLLWAKKAGHTGTLDPLATGLLPLCFGEATKFSQDLLEAD 79
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y V RLG TST DA+ V+ P + E +R A F GEI QVPPM SA+K
Sbjct: 80 KTYEAVVRLGIRTSTADAEGEVLSERPVA-VTPEQLRAAIGRFVGEIDQVPPMHSALKKD 138
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQ--NLIFRVTCSKGTYIRSLCADFG 488
G+ +Y+ AR G+++E + RR++I D+ + D + RV CSKGTYIR+L D G
Sbjct: 139 GKPLYEYARAGQTVERAARRVTIRAIDVLATDLDAAAPTVTLRVCCSKGTYIRTLGEDLG 198
Query: 489 KALGSCAHLTALRRDSIGQYSADDAWEFKELEEA 522
+ALG AHL ALRR +G + D A + LE A
Sbjct: 199 EALGCGAHLVALRRTQVGSLTLDGAVTLEALEAA 232
>sp|Q8XJS1|TRUB_CLOPE tRNA pseudouridine synthase B OS=Clostridium perfringens (strain 13
/ Type A) GN=truB PE=3 SV=1
Length = 294
Score = 173 bits (438), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 88/215 (40%), Positives = 128/215 (59%), Gaps = 1/215 (0%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
+ K G TSF V +RR+ K+KKVGH GTLDP A+G+L VC+GKATK++D K Y
Sbjct: 7 IYKNTGMTSFDVVAMVRRVAKMKKVGHTGTLDPAASGVLPVCLGKATKIIDYIMENKKVY 66
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEK 433
+LG T T+D + V++ E HI ++I SF G I QVPPM+SA+K G +
Sbjct: 67 RVNLKLGMVTDTYDLEGEVLREEDASHITKDEILNCINSFVGTIDQVPPMYSALKQNGVR 126
Query: 434 MYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKALGS 493
+Y+ AR+G + R+I+I+ + +E N+ V CSKGTYIRSLC D G+ L
Sbjct: 127 LYELARQGIEVHREARKITIYSIE-NIKIESNDNIQMDVCCSKGTYIRSLCYDIGEKLNV 185
Query: 494 CAHLTALRRDSIGQYSADDAWEFKELEEAITKNYF 528
A +TAL R G ++ ++A ++L E + + +
Sbjct: 186 GATMTALERIQNGTFTKEEAINIEDLTEELLEKHI 220
>sp|Q6HF05|TRUB_BACHK tRNA pseudouridine synthase B OS=Bacillus thuringiensis subsp.
konkukian (strain 97-27) GN=truB PE=3 SV=1
Length = 307
Score = 172 bits (437), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 90/221 (40%), Positives = 139/221 (62%), Gaps = 11/221 (4%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+VL++KPKG TS KLR++++ K++GH GTLDP TG+L +CVG+ATK+
Sbjct: 4 VVLLHKPKGMTSHDCVFKLRKILREKRIGHTGTLDPDVTGVLPICVGRATKIAQFLTSET 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V++ + + I +++ A A+ G I Q+PPMFSA+KV
Sbjct: 64 KTYEGEVTLGFSTTTEDASGEVVETKHVDRVITRKEVEGALAALTGTIEQMPPMFSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQ-------NLIFRVTCSKGTYIRS 482
G+K+Y+ AR G+ +E R I+I +F + L+DR+ + FRVTCSKGTY+R+
Sbjct: 124 NGKKLYEYARAGQEVERPVRTITIHEFVL---LDDREVFEGETISFRFRVTCSKGTYVRT 180
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
L G+ LG +H++ L R + G++ +D F+E+EE +
Sbjct: 181 LAVMIGEKLGFPSHMSHLVRTASGEFLLEDCISFEEIEENV 221
>sp|A0RHI1|TRUB_BACAH tRNA pseudouridine synthase B OS=Bacillus thuringiensis (strain Al
Hakam) GN=truB PE=3 SV=1
Length = 307
Score = 172 bits (437), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 90/221 (40%), Positives = 139/221 (62%), Gaps = 11/221 (4%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+VL++KPKG TS KLR++++ K++GH GTLDP TG+L +CVG+ATK+
Sbjct: 4 VVLLHKPKGMTSHDCVFKLRKILREKRIGHTGTLDPDVTGVLPICVGRATKIAQFLTSET 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V++ + + I +++ A A+ G I Q+PPMFSA+KV
Sbjct: 64 KTYEGEVTLGFSTTTEDASGEVVETKHVDRVITRKEVEGALAALTGTIEQMPPMFSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQ-------NLIFRVTCSKGTYIRS 482
G+K+Y+ AR G+ +E R I+I +F + L+DR+ + FRVTCSKGTY+R+
Sbjct: 124 NGKKLYEYARAGQEVERPVRTITIHEFVL---LDDREVFEGETISFRFRVTCSKGTYVRT 180
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
L G+ LG +H++ L R + G++ +D F+E+EE +
Sbjct: 181 LAVMIGEKLGFPSHMSHLVRTASGEFLLEDCISFEEIEENV 221
>sp|Q8CXG9|TRUB_OCEIH tRNA pseudouridine synthase B OS=Oceanobacillus iheyensis (strain
DSM 14371 / JCM 11309 / KCTC 3954 / HTE831) GN=truB PE=3
SV=1
Length = 303
Score = 172 bits (437), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 86/210 (40%), Positives = 124/210 (59%), Gaps = 1/210 (0%)
Query: 316 KPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSG 375
KPKG TS + RR K KKVGH GTLDP G+L +C+G+ATK+V K Y
Sbjct: 9 KPKGLTSHDCVMRCRRYFKTKKVGHTGTLDPEVEGVLPICIGQATKIVPFLTDTKKVYEA 68
Query: 376 VFRLGEATSTWDADSPVIQ-REPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEKM 434
+LG +T T DA +++ +E + ++++ + +F G Q+PPM+SA+KV G+K+
Sbjct: 69 TVQLGYSTETEDATGKIVETKEVSDFPTNKNLEEVLQTFIGRTKQIPPMYSAVKVNGKKL 128
Query: 435 YDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKALGSC 494
Y+ AR ES+E R I IF+ + E + R+ CSKGTYIR+LC D GKALG
Sbjct: 129 YEYARANESVERPVREIEIFELTLTSVDEKNHSFDIRIVCSKGTYIRTLCVDIGKALGYP 188
Query: 495 AHLTALRRDSIGQYSADDAWEFKELEEAIT 524
AH++ L R G +S + F +EEA++
Sbjct: 189 AHMSLLTRTKTGAFSEKNTVTFDMIEEAVS 218
>sp|Q0TPS0|TRUB_CLOP1 tRNA pseudouridine synthase B OS=Clostridium perfringens (strain
ATCC 13124 / NCTC 8237 / Type A) GN=truB PE=3 SV=1
Length = 294
Score = 172 bits (437), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 88/215 (40%), Positives = 128/215 (59%), Gaps = 1/215 (0%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
+ K G TSF V +RR+ K+KKVGH GTLDP A+G+L VC+GKATK++D K Y
Sbjct: 7 IYKNTGMTSFDVVAIVRRVAKMKKVGHTGTLDPAASGVLPVCLGKATKIIDYIMENKKVY 66
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEK 433
+LG T T+D + V++ E HI ++I SF G I QVPPM+SA+K G +
Sbjct: 67 RVNLKLGMVTDTYDLEGEVLREEDASHITKDEILNCINSFLGTIDQVPPMYSALKQNGVR 126
Query: 434 MYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKALGS 493
+Y+ AR+G + R+I+I+ + +E N+ V CSKGTYIRSLC D G+ L
Sbjct: 127 LYELARQGIEVHREARKITIYSIE-NIKIESNDNIQMDVCCSKGTYIRSLCYDIGEKLNV 185
Query: 494 CAHLTALRRDSIGQYSADDAWEFKELEEAITKNYF 528
A +TAL R G ++ ++A ++L E + + +
Sbjct: 186 GATMTALERIQNGTFTKEEAINIEDLTEELLEKHI 220
>sp|Q636L6|TRUB_BACCZ tRNA pseudouridine synthase B OS=Bacillus cereus (strain ZK / E33L)
GN=truB PE=3 SV=1
Length = 307
Score = 172 bits (436), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 89/221 (40%), Positives = 139/221 (62%), Gaps = 11/221 (4%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+VL++KPKG TS KLR++++ K++GH GTLDP TG+L +CVG+ATK+
Sbjct: 4 VVLLHKPKGMTSHDCVFKLRKILREKRIGHTGTLDPDVTGVLPICVGRATKIAQFLTSET 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V++ + + I +++ +A + G I Q+PPMFSA+KV
Sbjct: 64 KTYEGEVTLGFSTTTEDASGEVVETKHVDRVITRKEVEEALVTLTGTIEQMPPMFSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQ-------NLIFRVTCSKGTYIRS 482
G+K+Y+ AR G+ +E R I+I +F + L+DR+ + FRVTCSKGTY+R+
Sbjct: 124 NGKKLYEYARAGQEVERPVRTITIHEFVL---LDDREVFEGETISFRFRVTCSKGTYVRT 180
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
L G+ LG +H++ L R + G++ +D F+E+EE +
Sbjct: 181 LAVMIGEKLGFPSHMSHLVRTASGEFLLEDCISFEEIEENV 221
>sp|Q812X9|TRUB_BACCR tRNA pseudouridine synthase B OS=Bacillus cereus (strain ATCC 14579
/ DSM 31) GN=truB PE=3 SV=2
Length = 307
Score = 172 bits (436), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 90/221 (40%), Positives = 137/221 (61%), Gaps = 11/221 (4%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+VL++KPKG TS KLR++++ K++GH GTLDP TG+L +CVG+ATK+
Sbjct: 4 VVLLHKPKGMTSHDCVFKLRKILREKRIGHTGTLDPDVTGVLPICVGRATKIAQFLTSET 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V++ + + I ++ K A G I Q+PPMFSA+KV
Sbjct: 64 KTYEGEVTLGFSTTTEDASGEVVETKNVDRTITRMEVEKVLAELTGTIEQMPPMFSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQ-------NLIFRVTCSKGTYIRS 482
G+K+Y+ AR G+ +E R I+I +F + L+DR+ + FRVTCSKGTY+R+
Sbjct: 124 NGKKLYEYARAGQEVERPVRTITIHEFVL---LDDREVFEGENISFRFRVTCSKGTYVRT 180
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523
L G+ LG +H++ L R + G++ +D F+E+EE +
Sbjct: 181 LAVMIGEKLGFPSHMSHLVRTASGEFLLEDCISFEEIEENV 221
>sp|A2C4C0|TRUB_PROM1 tRNA pseudouridine synthase B OS=Prochlorococcus marinus (strain
NATL1A) GN=truB PE=3 SV=1
Length = 314
Score = 171 bits (432), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 80/196 (40%), Positives = 124/196 (63%), Gaps = 2/196 (1%)
Query: 307 PFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRY 366
PFG V+++KP G TS +LR++ ++K+GH+GTLDP TG+L + +G AT+L+
Sbjct: 4 PFG-FVVIDKPSGLTSHDCVNRLRKVFGIRKIGHSGTLDPAVTGVLPIAIGDATRLISYL 62
Query: 367 QGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSA 426
QG K Y+G+ +LG T+T D +I+ + W I DI +FRGEI Q PP+FS+
Sbjct: 63 QGS-KAYTGIIQLGATTNTDDMQGEIIESKAWPLITQNDINYLLENFRGEILQKPPIFSS 121
Query: 427 IKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCAD 486
+ + GE+ Y KAR+GE +L P++++I + ++ +++ L+ V CS GTYIRSL D
Sbjct: 122 VHIKGERAYKKARKGEKFDLIPKKVTINKLNLISWSQNKGELLVDVDCSTGTYIRSLARD 181
Query: 487 FGKALGSCAHLTALRR 502
G +G +L +LRR
Sbjct: 182 IGDKIGCGGYLKSLRR 197
>sp|Q03FS1|TRUB_PEDPA tRNA pseudouridine synthase B OS=Pediococcus pentosaceus (strain
ATCC 25745 / 183-1w) GN=truB PE=3 SV=1
Length = 299
Score = 170 bits (431), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 87/218 (39%), Positives = 135/218 (61%), Gaps = 6/218 (2%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ +NK +G TS V K+R +++ KKVGH+GTLDP G+L +CVG+ATK+VD G
Sbjct: 4 IIPINKERGMTSHDVVAKVRGILRTKKVGHSGTLDPSVDGVLPICVGRATKVVDYLMGFG 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPW-EHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T D D V++ + E + DE I + + G + Q+PPM+SA+KV
Sbjct: 64 KVYQGSITLGFSTTTEDLDGEVVETKKLDEPLTDEQINQTLTAMTGTLIQIPPMYSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIER-SLED----RQNLIFRVTCSKGTYIRSLC 484
G K+Y+ AR GE++E R+I ++ F R S+ D +Q + F+V+C KGTY+R+L
Sbjct: 124 KGRKLYEYARAGETVERPQRQIKVYDFVQTRPSIFDAEKGQQTIYFKVSCGKGTYVRTLA 183
Query: 485 ADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEA 522
DFG+ G A ++ L R + G + ++ +LE+A
Sbjct: 184 VDFGRHFGLPAVMSDLSRLASGGFKIEECLTLSDLEQA 221
>sp|P60343|TRUB_CORDI tRNA pseudouridine synthase B OS=Corynebacterium diphtheriae
(strain ATCC 700971 / NCTC 13129 / Biotype gravis)
GN=truB PE=3 SV=1
Length = 300
Score = 170 bits (431), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 92/219 (42%), Positives = 128/219 (58%), Gaps = 11/219 (5%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP+G TS V K+RR KKVGHAGTLDPMATG+L++ + + TK +
Sbjct: 10 LVIVDKPQGMTSHDVVSKIRRTFSTKKVGHAGTLDPMATGVLVLGLERGTKFLAHMVAST 69
Query: 371 KGYSGVFRLGEATSTWDADSPVIQR---EPWEHIKDEDIRKAAASFRGEIWQVPPMFSAI 427
K Y+ RLG AT+T D + I + I + I A FRG I Q P SAI
Sbjct: 70 KSYTATIRLGAATTTDDREGETITSASPDQLAGITETKISDAVKQFRGSIMQRPAAVSAI 129
Query: 428 KVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIF-----RVTCSKGTYIRS 482
K+ G++ + + R GE +E+ R ++I ++DI LE R++ F V CS GTYIRS
Sbjct: 130 KIDGKRAHQRVREGEKVEIPARPVTISRYDI---LEIRRDAAFIDIDVEVDCSSGTYIRS 186
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
L D G+ LG HLTALRR +G ++ D+A ++LEE
Sbjct: 187 LARDLGEELGVGGHLTALRRTQVGPFTLDNAVTLEKLEE 225
>sp|A7GG03|TRUB_CLOBL tRNA pseudouridine synthase B OS=Clostridium botulinum (strain
Langeland / NCTC 10281 / Type F) GN=truB PE=3 SV=1
Length = 289
Score = 170 bits (431), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 93/215 (43%), Positives = 131/215 (60%), Gaps = 3/215 (1%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
V KPKG TSF V +R++ K+KKVGH GTLDP+A+G+L +C+GKATK+VD K Y
Sbjct: 7 VLKPKGITSFDVVRDIRKIAKIKKVGHTGTLDPLASGVLPICIGKATKIVDYIMEGTKTY 66
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEK 433
+LG T T+D + V++ E ++ ++ K + G+I QVPPM+SA+K+ G+K
Sbjct: 67 RVEMKLGTTTDTYDREGTVLE-EKEINLTPIEVEKTIKKYIGDIDQVPPMYSALKINGQK 125
Query: 434 MYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKALGS 493
+YD AR+G IE R+I I+ I D +IF V CSKGTYIRSLC D GK L S
Sbjct: 126 LYDLARKGIEIEREARKIHIYDICILSI--DLPYVIFDVKCSKGTYIRSLCFDIGKDLDS 183
Query: 494 CAHLTALRRDSIGQYSADDAWEFKELEEAITKNYF 528
A + L+R ++ +A + ++L E K Y
Sbjct: 184 GAVMWNLQRLEASPFNIKEAIKLEDLNEENIKQYI 218
>sp|Q0SSD7|TRUB_CLOPS tRNA pseudouridine synthase B OS=Clostridium perfringens (strain
SM101 / Type A) GN=truB PE=3 SV=1
Length = 294
Score = 170 bits (431), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 88/215 (40%), Positives = 127/215 (59%), Gaps = 1/215 (0%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
+ K G TSF V +RR+ K+KKVGH GTLDP A+G+L VC+GKATK++D K Y
Sbjct: 7 IYKNTGMTSFDVVAMVRRVAKMKKVGHTGTLDPEASGVLPVCLGKATKIIDYIMENKKVY 66
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEK 433
+LG T T+D + V++ E HI ++I SF G I QVPPM+SA+K G +
Sbjct: 67 RVNLKLGMVTDTYDLEGEVLREEDASHITKDEILNCINSFVGTIDQVPPMYSALKQNGVR 126
Query: 434 MYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKALGS 493
+Y+ AR+G + R+I+I+ + +E N+ V CSKGTYIRSLC D G+ L
Sbjct: 127 LYELARQGIEVHREARKITIYSIE-NIKIESNDNIQMDVCCSKGTYIRSLCYDIGEKLNV 185
Query: 494 CAHLTALRRDSIGQYSADDAWEFKELEEAITKNYF 528
A +TAL R G + ++A ++L E + + +
Sbjct: 186 GATMTALERIQNGPFIKEEAINIEDLTEELLEKHI 220
>sp|A6KZJ9|TRUB_BACV8 tRNA pseudouridine synthase B OS=Bacteroides vulgatus (strain ATCC
8482 / DSM 1447 / NCTC 11154) GN=truB PE=3 SV=1
Length = 235
Score = 170 bits (430), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 92/219 (42%), Positives = 129/219 (58%), Gaps = 8/219 (3%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR----RLVKVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G ++ +KP WTSF V K+R R + VKK VGHAGTLDP+ATG++I+C GKATK
Sbjct: 6 GEVLYFDKPLKWTSFAVVNKIRYHICRKLGVKKIKVGHAGTLDPLATGVMIICTGKATKR 65
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ +Q K Y +LG T ++D + + P EHI E + +A F G I Q+PP
Sbjct: 66 IEEFQYHTKEYIATLQLGATTPSFDLEKEIDATYPTEHITRELVEEALQRFIGRIEQIPP 125
Query: 423 MFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRS 482
+FSA KV G++ YD AR+GE +EL + + I + ++ + + RV CSKGTYIR+
Sbjct: 126 VFSACKVDGKRAYDLARKGEDVELKAKTLIIDEIELLEC--NLPEIKIRVVCSKGTYIRA 183
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
L D G+AL S AHLT L R +G +D + E
Sbjct: 184 LARDIGEALNSGAHLTGLIRTRVGDVRLEDCLSVESFPE 222
>sp|Q5NZR9|TRUB_AROAE tRNA pseudouridine synthase B OS=Aromatoleum aromaticum (strain
EbN1) GN=truB PE=3 SV=1
Length = 308
Score = 169 bits (429), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 91/210 (43%), Positives = 123/210 (58%), Gaps = 3/210 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L++KP+G TS RRL+ K GH GTLDPMATGLL + +G+ATK
Sbjct: 17 VLLLDKPRGLTSNAALQTARRLLNAAKAGHTGTLDPMATGLLPLTLGEATKFSQMLLDAD 76
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y RLG T T DA+ I P H+ D+ IR+A A+ GEI QVPPM+SA+K
Sbjct: 77 KAYEATVRLGIETDTGDAEGAAIATAPV-HVTDDSIRQALAALTGEIEQVPPMYSALKRD 135
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCADFGKA 490
G+ +Y+ AR G +E + R ++I ++ D +L RV CSKGTY+R+L D G+
Sbjct: 136 GKPLYEYARAGIEVERAARPVTIHSLELLGVEGD--SLRIRVDCSKGTYVRTLAIDLGRL 193
Query: 491 LGSCAHLTALRRDSIGQYSADDAWEFKELE 520
LG HLT LRR IG ++ D+A LE
Sbjct: 194 LGCGGHLTELRRTRIGPFNVDEAVTLTALE 223
>sp|Q1QSZ2|TRUB_CHRSD tRNA pseudouridine synthase B OS=Chromohalobacter salexigens
(strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=truB
PE=3 SV=1
Length = 307
Score = 169 bits (429), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 91/215 (42%), Positives = 124/215 (57%), Gaps = 2/215 (0%)
Query: 307 PFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRY 366
P ++L++K G +S ++RRL +K GH GTLDPMATGLL VC G+ATK
Sbjct: 9 PIDGVLLLDKAPGVSSNRALQQVRRLYDAQKAGHTGTLDPMATGLLPVCFGEATKFSAYL 68
Query: 367 QGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSA 426
K Y RLGE T T DA+ VI+ + + DI A A FRGE+ QVPPM+SA
Sbjct: 69 LDADKTYRTWVRLGEVTDTGDAEGTVIEHHSVPALDERDIEAALAGFRGEVEQVPPMYSA 128
Query: 427 IKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCAD 486
+K G +Y+ AR G+ +E + RR++++ + + + V CSKGTYIR+L D
Sbjct: 129 LKHQGRPLYELAREGKHVERAARRVTVYDMRLLSC--EAEGFELEVRCSKGTYIRTLAED 186
Query: 487 FGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
G ALG AH+T+LRR G + AD F LE+
Sbjct: 187 IGHALGCGAHITSLRRLRSGPFEADAMHAFSALED 221
>sp|Q1QEP3|TRUB_PSYCK tRNA pseudouridine synthase B OS=Psychrobacter cryohalolentis
(strain K5) GN=truB PE=3 SV=1
Length = 359
Score = 169 bits (428), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 92/215 (42%), Positives = 119/215 (55%), Gaps = 7/215 (3%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKV-----KKVGHAGTLDPMATGLLIVCVGKATKLVDR 365
++LV+KP+G TS V K++ L K KK GH GTLDPMATGLL +C+G+ATK
Sbjct: 24 VILVDKPQGMTSQQVVSKVKYLFKSPNHDSKKAGHTGTLDPMATGLLPICLGEATKFSHY 83
Query: 366 YQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFS 425
K Y LG T T DAD V P D + K A F G Q+PPM+S
Sbjct: 84 QLDADKSYQATILLGSQTDTGDADGQVTAEAPIPAFDDALLDKVAQQFLGAQQQIPPMYS 143
Query: 426 AIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCA 485
A+K G+K+Y+ AR G ++ PR I + IE D Q + VTCSKGTY+R L
Sbjct: 144 ALKKDGKKLYEYARAGIEVDRPPRDIVLKA--IELKAIDEQQIQLTVTCSKGTYVRVLAE 201
Query: 486 DFGKALGSCAHLTALRRDSIGQYSADDAWEFKELE 520
D KA+G+ HLTALRR +G + D+ +LE
Sbjct: 202 DIAKAMGTLGHLTALRRLQVGDFKIDETIALADLE 236
>sp|B2UAA5|TRUB_RALPJ tRNA pseudouridine synthase B OS=Ralstonia pickettii (strain 12J)
GN=truB PE=3 SV=1
Length = 318
Score = 169 bits (427), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 91/205 (44%), Positives = 128/205 (62%), Gaps = 3/205 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L++KP GW+S + +RL+ KK GH GTLDP+ATGLL +C G+ATK
Sbjct: 20 VLLLDKPIGWSSNDALIRAKRLLWAKKAGHTGTLDPLATGLLPLCFGEATKFSQDLLDAD 79
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVG 430
K Y V RLG TST DA+ V+ P + E ++ A A F GEI QVPPM SA+K
Sbjct: 80 KTYETVVRLGIRTSTADAEGEVLSERPVS-VTPEQLQAAIARFVGEIDQVPPMHSALKKD 138
Query: 431 GEKMYDKARRGESIELSPRRISIFQFDIERS-LEDRQ-NLIFRVTCSKGTYIRSLCADFG 488
G+ +Y+ AR G+++E + RR++I+ D+ + L+ + + RV+CSKGTYIR+L D G
Sbjct: 139 GKPLYEYARAGQTVERAARRVTIYAIDVLATDLQSAEPTVTLRVSCSKGTYIRTLGEDIG 198
Query: 489 KALGSCAHLTALRRDSIGQYSADDA 513
+ALG HL ALRR +G + D A
Sbjct: 199 EALGCGGHLVALRRTQVGNLTLDGA 223
>sp|A7GRE0|TRUB_BACCN tRNA pseudouridine synthase B OS=Bacillus cereus subsp. cytotoxis
(strain NVH 391-98) GN=truB PE=3 SV=1
Length = 307
Score = 168 bits (426), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 88/219 (40%), Positives = 135/219 (61%), Gaps = 11/219 (5%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+VL++KPKG TS KLR++++ K++GH GTLDP TG+L +CVG+ATK+
Sbjct: 4 VVLLHKPKGMTSHDCVFKLRKILREKRIGHTGTLDPDVTGVLPICVGRATKIAQFLTSET 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V++++ I ++I A G + QVPPM+SA+KV
Sbjct: 64 KTYEGEVTLGFSTTTEDASGEVVEKQDVNRTITRKEIEAVLAELTGTLEQVPPMYSAVKV 123
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQ-------NLIFRVTCSKGTYIRS 482
G+K+Y+ AR G+ ++ R I+I +F + L++R+ + FRVTCSKGTY+R+
Sbjct: 124 NGKKLYEYARAGQEVKRPVRIITIHEFTL---LDNRETFEGANISFRFRVTCSKGTYVRT 180
Query: 483 LCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521
L G+ LG AH++ L R + G++ D F+E+EE
Sbjct: 181 LAVMIGEKLGFPAHMSDLVRTASGEFQLHDCVSFEEIEE 219
>sp|Q46JB9|TRUB_PROMT tRNA pseudouridine synthase B OS=Prochlorococcus marinus (strain
NATL2A) GN=truB PE=3 SV=1
Length = 314
Score = 168 bits (426), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 81/196 (41%), Positives = 122/196 (62%), Gaps = 2/196 (1%)
Query: 307 PFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRY 366
PFG V+++KP G TS +LR++ +KK+GH+GTLDP TG+L + +G AT+L+
Sbjct: 4 PFG-FVVIDKPSGLTSHDCVNRLRKVFGIKKIGHSGTLDPAVTGVLPIAIGDATRLISYL 62
Query: 367 QGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSA 426
QG K Y G+ +LG T+T D +I+ + W I I +FRGEI Q PP+FS+
Sbjct: 63 QGS-KAYRGIIQLGATTNTDDMQGEIIESKAWPLITQNYINYLLENFRGEILQKPPIFSS 121
Query: 427 IKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCAD 486
+ + GE+ Y KAR+GE +L P++++I + ++ +D+ L+ V CS GTYIRSL D
Sbjct: 122 VHIKGERAYKKARKGEKFDLIPKKVTINKLNLISWSQDKGELLVDVDCSTGTYIRSLARD 181
Query: 487 FGKALGSCAHLTALRR 502
G +G +L +LRR
Sbjct: 182 IGDKIGCGGYLKSLRR 197
>sp|A7Z4T7|TRUB_BACA2 tRNA pseudouridine synthase B OS=Bacillus amyloliquefaciens (strain
FZB42) GN=truB PE=3 SV=1
Length = 309
Score = 168 bits (426), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 89/218 (40%), Positives = 132/218 (60%), Gaps = 4/218 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L++KP G TS K+R+L+K KKVGH GTLDP +G+L +CVG+ATK+V+
Sbjct: 5 VLLLHKPVGMTSHDCVMKIRKLLKTKKVGHTGTLDPEVSGVLPICVGRATKIVEYVTDKS 64
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPW-EHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y LG +TST D + +P E +K+ DI+ +G QVPPM+SA+KV
Sbjct: 65 KTYDAEITLGFSTSTEDQTGETVSVKPVKEPLKEADIKAVLDELKGPQEQVPPMYSAVKV 124
Query: 430 GGEKMYDKARRGESIELSPRRISIFQFDIERSL---EDRQNLIFRVTCSKGTYIRSLCAD 486
G+K+Y+ AR G +E R I+I + + ED + F VTCSKGTY+R+L
Sbjct: 125 NGKKLYEYARAGIEVERPKRNITIEDIALTSPVTYNEDTASFRFTVTCSKGTYVRTLAVT 184
Query: 487 FGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAIT 524
G+ LG AH++ L R + G +S D+ + F+ELE+ ++
Sbjct: 185 IGEKLGYPAHMSHLIRTASGDFSLDECFTFEELEQQVS 222
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.134 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 208,219,182
Number of Sequences: 539616
Number of extensions: 9495490
Number of successful extensions: 34252
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 199
Number of HSP's that attempted gapping in prelim test: 31675
Number of HSP's gapped (non-prelim): 1470
length of query: 528
length of database: 191,569,459
effective HSP length: 122
effective length of query: 406
effective length of database: 125,736,307
effective search space: 51048940642
effective search space used: 51048940642
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)