Query 009707
Match_columns 528
No_of_seqs 177 out of 1125
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 11:14:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009707.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009707hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1sgv_A TRNA pseudouridine synt 100.0 1.8E-75 6E-80 587.2 22.4 213 309-521 6-220 (316)
2 1r3e_A TRNA pseudouridine synt 100.0 1.4E-74 4.8E-79 579.2 23.3 210 309-521 3-212 (309)
3 1k8w_A TRNA pseudouridine synt 100.0 2.7E-74 9.1E-79 580.8 25.2 219 300-522 17-235 (327)
4 3u28_A H/ACA ribonucleoprotein 100.0 3.9E-58 1.3E-62 473.3 20.8 180 309-522 59-239 (400)
5 2aus_C Pseudouridine synthase; 100.0 1.2E-57 4.2E-62 459.5 21.5 179 308-523 45-224 (334)
6 2apo_A Probable tRNA pseudouri 100.0 1.7E-57 5.8E-62 463.0 21.1 179 308-523 65-243 (357)
7 2v9k_A Uncharacterized protein 98.8 1.8E-08 6.1E-13 107.8 10.8 102 368-505 410-520 (530)
8 3dh3_A Ribosomal large subunit 98.6 1.5E-07 5.1E-12 93.5 10.4 150 310-523 68-233 (290)
9 1v9k_A Ribosomal large subunit 97.6 5.3E-05 1.8E-09 71.8 5.2 72 310-382 10-93 (228)
10 2gml_A Ribosomal large subunit 97.6 8.3E-05 2.8E-09 72.4 6.4 147 310-522 15-179 (237)
11 2i82_A Ribosomal large subunit 96.8 0.00086 2.9E-08 63.0 4.7 70 309-381 19-101 (217)
12 1vio_A Ribosomal small subunit 96.8 0.00023 7.9E-09 67.9 0.7 67 311-378 64-139 (243)
13 2oml_A Ribosomal large subunit 96.8 0.00037 1.3E-08 64.1 2.0 78 299-378 3-86 (189)
14 1ksk_A Ribosomal small subunit 96.7 0.00027 9.1E-09 66.8 0.4 68 310-378 64-140 (234)
15 1v9f_A Ribosomal large subunit 96.7 0.0013 4.6E-08 65.2 5.2 73 309-382 90-178 (325)
16 2olw_A Ribosomal large subunit 96.3 0.00098 3.3E-08 63.1 1.0 76 301-378 33-114 (217)
17 1szw_A TRNA pseudouridine synt 40.2 35 0.0012 35.3 5.7 45 311-356 67-113 (379)
18 1z2z_A Probable tRNA pseudouri 22.1 84 0.0029 32.7 4.9 45 311-356 51-97 (446)
No 1
>1sgv_A TRNA pseudouridine synthase B; hinged motion, tRNA modification, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} SCOP: b.122.1.1 d.265.1.2
Probab=100.00 E-value=1.8e-75 Score=587.19 Aligned_cols=213 Identities=43% Similarity=0.712 Sum_probs=178.6
Q ss_pred ceEEEeeCCCCCChHHHHHHHHHHhCCccccccCCCCCCCceEeEEEecccccchhhhcCCCcEEEEEEEEcccccCCCC
Q 009707 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSGVFRLGEATSTWDA 388 (528)
Q Consensus 309 GgIL~VdKP~G~TS~dVV~klRrlL~ikKVGHaGTLDP~ATGVLVVgVGkATKLl~~l~~~~K~Y~at~~LG~eTDT~D~ 388 (528)
+|||+||||.|||||+||++||++++.+||||+|||||+||||||||+|+|||+++|+++.+|+|+++++||.+|||+|.
T Consensus 6 ~Gil~vdKP~G~TS~dvv~~vrr~l~~kKvGH~GTLDP~AtGvL~i~iG~aTKl~~~l~~~~K~Y~~~~~lG~~TdT~D~ 85 (316)
T 1sgv_A 6 PGIVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILGLLTAAPKSYAATIRLGQTTSTEDA 85 (316)
T ss_dssp SEEEEEEECTTCCHHHHHHHHHHHTTCSCEEESSCCCTTCEEEEEEEEGGGGGGGGGTTTSCEEEEEEEEETEEETTSBT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhccccccccccCCCCCeEEEEEEECHHHhHHHHhCcCCcEEEEEEEECCccCCCCC
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEeeccCCCCCHHHHHHHHHhCccceeecCCcccccccCChhhHHHHhcCcccccCCceEEEEEEEeeeccC--CCc
Q 009707 389 DSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLE--DRQ 466 (528)
Q Consensus 389 eGkVie~~p~~hIT~e~LekaL~kF~G~i~QvPP~YSAVKVnGKRAYELARkGe~VELkpR~V~IyeleL~~~l~--~~p 466 (528)
+|+|+++.++.|+|.++|+++|++|+|+|+|+||+|||||+||+|||||||+|++||+++|+|+||+|+++.+.. ..|
T Consensus 86 eG~v~~~~~~~~~t~~~i~~~l~~f~G~i~Q~PP~ySAvKv~GkrlYelAR~G~~ve~~~R~v~I~~i~ll~~~~~~~~p 165 (316)
T 1sgv_A 86 EGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSSVSAIKVGGRRAYRLARQGRSVQLEARPIRIDRFELLAARRRDQLI 165 (316)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHTCEEC----------------------------CCCCCCEEEEEEEEEEEEETTEE
T ss_pred CCCEEEecCCCCCCHHHHHHHHHhccccEEEeCCHHHhcccCChhHHHHHhCCCcccccceEEEEEEEEEEEeeccCCCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999987632 247
Q ss_pred eEEEEEEecCCccHHHHHHHHHHHhcccceecceEEEEEeccCcccccCHHHHHH
Q 009707 467 NLIFRVTCSKGTYIRSLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521 (528)
Q Consensus 467 ~~tfeV~CSkGTYIRSLa~DIG~aLGt~AhLt~LRRTriG~FtLddA~tLedL~~ 521 (528)
.++|+|+||+||||||||+|||.+|||+|||++||||++|+|++++|++|++|.+
T Consensus 166 ~~~~~v~CskGTYIRsLa~DiG~~Lg~~a~~~~LrRt~~G~F~~~~a~tl~~l~~ 220 (316)
T 1sgv_A 166 DIDVEIDCSSGTYIRALARDLGDALGVGGHVTALRRTRVGRFELDQARSLDDLAE 220 (316)
T ss_dssp EEEEEEEESCCTTHHHHHHHHHHHHTSCEEEEEEEEEEETTEEGGGCBCHHHHHH
T ss_pred eEEEEEEECCCCcHHHHHHHHHHHhCCCEEEeeEEEEEEccCcHHHccCHHHHhh
Confidence 8999999999999999999999999999999999999999999999999999976
No 2
>1r3e_A TRNA pseudouridine synthase B; RNA modification, pseudouridylation, lyase-RNA complex; HET: FHU; 2.10A {Thermotoga maritima} SCOP: b.122.1.1 d.265.1.2 PDB: 1ze2_A* 2ab4_A* 1ze1_A
Probab=100.00 E-value=1.4e-74 Score=579.22 Aligned_cols=210 Identities=40% Similarity=0.639 Sum_probs=205.0
Q ss_pred ceEEEeeCCCCCChHHHHHHHHHHhCCccccccCCCCCCCceEeEEEecccccchhhhcCCCcEEEEEEEEcccccCCCC
Q 009707 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSGVFRLGEATSTWDA 388 (528)
Q Consensus 309 GgIL~VdKP~G~TS~dVV~klRrlL~ikKVGHaGTLDP~ATGVLVVgVGkATKLl~~l~~~~K~Y~at~~LG~eTDT~D~ 388 (528)
+|||+||||.|||||+||++||++++.+||||+|||||+||||||||+|+|||+++|+++.+|+|+++++||.+|||+|.
T Consensus 3 ~Gil~vdKP~G~TS~~vv~~vrr~l~~kKvGH~GTLDP~AtGvL~i~iG~aTKl~~~l~~~~K~Y~a~~~lG~~TdT~D~ 82 (309)
T 1r3e_A 3 HGILVAYKPKGPTSHDVVDEVRKKLKTRKVGHGGTLDPFACGVLIIGVNQGTRILEFYKDLKKVYWVKMRLGLITETFDI 82 (309)
T ss_dssp CEEEEEEECSSSCHHHHHHHHHHHTTCSCEEESSCCCTTCEEEEEEEEGGGGGGGGGGTTSCEEEEEEEEETEEESSSBT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhccceecccccCCCCcceeEEEEECHHHhHHHHhCccCcEEEEEEEECCcccCCCC
Confidence 45999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEeeccCCCCCHHHHHHHHHhCccceeecCCcccccccCChhhHHHHhcCcccccCCceEEEEEEEeeeccCCCceE
Q 009707 389 DSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNL 468 (528)
Q Consensus 389 eGkVie~~p~~hIT~e~LekaL~kF~G~i~QvPP~YSAVKVnGKRAYELARkGe~VELkpR~V~IyeleL~~~l~~~p~~ 468 (528)
+|+|++++++. +|.++|+++|++|+|+|+|+||+|||||+||+|||||||+|++|++++|+|+||+|+++.+ +.|.+
T Consensus 83 eG~v~~~~~~~-~t~~~i~~~l~~f~G~i~Q~PP~~SAvKv~GkraYelAR~G~~ve~~~R~v~I~~i~ll~~--~~p~~ 159 (309)
T 1r3e_A 83 TGEVVEERECN-VTEEEIREAIFSFVGEYDQVPPAYSAKKYKGERLYKLAREGKIINLPPKRVKIFKIWDVNI--EGRDV 159 (309)
T ss_dssp TSCEEEECCCC-CCHHHHHHHHHSSSEEEEECCCSSSSCEETTEEHHHHHHTTCCCCCCCEEEEEEEEEEEEE--ETTEE
T ss_pred CCCEEEEecCC-CCHHHHHHHHHhccceEEEeCChHHhcccCCccHHHHHhCCCcccccceEEEEEEEEEEEe--eCCEE
Confidence 99999999997 9999999999999999999999999999999999999999999999999999999999876 56899
Q ss_pred EEEEEecCCccHHHHHHHHHHHhcccceecceEEEEEeccCcccccCHHHHHH
Q 009707 469 IFRVTCSKGTYIRSLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEE 521 (528)
Q Consensus 469 tfeV~CSkGTYIRSLa~DIG~aLGt~AhLt~LRRTriG~FtLddA~tLedL~~ 521 (528)
+|+|+||+||||||||||||.+|||+|||++||||++|+|++++|+++++|.+
T Consensus 160 ~~~v~CskGTYIRsL~~DiG~~Lg~~a~~~~LrRt~~G~f~~~~a~~l~~l~~ 212 (309)
T 1r3e_A 160 SFRVEVSPGTYIRSLCMDIGYKLGCGATAVELVRESVGPHTIEESLNVFEAAP 212 (309)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTSCEEEEEEEEEEETTEEGGGCBCTTTSCH
T ss_pred EEEEEECCCchHHHHHHHHHHHhCCCEEEEEEEEEEEcCCcHHHccCHHHHhh
Confidence 99999999999999999999999999999999999999999999999999865
No 3
>1k8w_A TRNA pseudouridine synthase B; protein-RNA complex, T stem-loop, lyase/RNA complex; HET: FHU; 1.85A {Escherichia coli} SCOP: b.122.1.1 d.265.1.2 PDB: 1zl3_A* 1r3f_A
Probab=100.00 E-value=2.7e-74 Score=580.85 Aligned_cols=219 Identities=35% Similarity=0.628 Sum_probs=208.4
Q ss_pred CCCCCCCCCceEEEeeCCCCCChHHHHHHHHHHhCCccccccCCCCCCCceEeEEEecccccchhhhcCCCcEEEEEEEE
Q 009707 300 LPPTWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSGVFRL 379 (528)
Q Consensus 300 ~p~~~~~~~GgIL~VdKP~G~TS~dVV~klRrlL~ikKVGHaGTLDP~ATGVLVVgVGkATKLl~~l~~~~K~Y~at~~L 379 (528)
.+..|+.++| ||+||||.|||||+||++||++++.+||||+|||||+||||||||+|+|||+++|+++.+|+|+++++|
T Consensus 17 ~~~~~~~~~G-il~vdKP~G~TS~dvv~~vr~~l~~kKvGH~GTLDP~AtGvL~i~~G~aTKl~~~l~~~~K~Y~a~~~l 95 (327)
T 1k8w_A 17 IEGRHMDING-VLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSDKRYRVIARL 95 (327)
T ss_dssp -----CCCCE-EEEEEECTTCCHHHHHHHHHHHTTCSCEEESSCCCTTCEEEEEEEEGGGGGGTHHHHTSCEEEEEEEEE
T ss_pred cccccCCCCe-EEEEECCCCCCHHHHHHHHHHhhccceeccCCCCCCCCeeEEEEEECHHHhHHHHhccCCcEEEEEEEE
Confidence 4566766766 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCeEeeccCCCCCHHHHHHHHHhCccceeecCCcccccccCChhhHHHHhcCcccccCCceEEEEEEEee
Q 009707 380 GEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIE 459 (528)
Q Consensus 380 G~eTDT~D~eGkVie~~p~~hIT~e~LekaL~kF~G~i~QvPP~YSAVKVnGKRAYELARkGe~VELkpR~V~IyeleL~ 459 (528)
|.+|||+|.+|+|++++++ ++|.++|+++|++|+|+|+|+||+|||||+||+|||||||+|++|++++|+|+||+|+++
T Consensus 96 G~~TdT~D~eG~v~~~~~~-~~t~e~i~~~l~~f~G~i~Q~PP~~SAvKv~GkraYelAR~G~~ve~~~R~v~I~~i~ll 174 (327)
T 1k8w_A 96 GQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFI 174 (327)
T ss_dssp TEEESSSBTTSCEEEECCC-CCCHHHHHHHHHTTSEEEEECCCSSSCCEETTEEHHHHHHTTCCCCCCCEEEEEEEEEEE
T ss_pred CCcccCCCCCCCEEeecCC-CCCHHHHHHHHHhccceEEEeCChhheeccCCccHHHHHhCCCcccccceEEEEEEEEEE
Confidence 9999999999999999999 899999999999999999999999999999999999999999999999999999999998
Q ss_pred eccCCCceEEEEEEecCCccHHHHHHHHHHHhcccceecceEEEEEeccCcccccCHHHHHHH
Q 009707 460 RSLEDRQNLIFRVTCSKGTYIRSLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEA 522 (528)
Q Consensus 460 ~~l~~~p~~tfeV~CSkGTYIRSLa~DIG~aLGt~AhLt~LRRTriG~FtLddA~tLedL~~~ 522 (528)
.+ +.|.++|+|+||+||||||||+|||.+|||+|||++||||++|+|++++|++|++|.+.
T Consensus 175 ~~--~~~~~~~~v~CskGTYIRsL~~DiG~~Lg~~a~~~~LrRt~~G~F~~~~a~~l~~l~~~ 235 (327)
T 1k8w_A 175 RH--EGNELELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLREL 235 (327)
T ss_dssp EE--ETTEEEEEEEECTTCCHHHHHHHHHHHHTSCEEEEEEEEEEETTCCGGGCEEHHHHHHH
T ss_pred Ee--eCCEEEEEEEEcCCchHHHHHHHHHHHhCCCeEEEEEEEEEEcCCccccccCHHHHHHH
Confidence 76 56899999999999999999999999999999999999999999999999999999764
No 4
>3u28_A H/ACA ribonucleoprotein complex subunit 4; pseudouridine synthase, pseudouridylation, H/ACA RNA; 1.90A {Saccharomyces cerevisiae} PDB: 3uai_A
Probab=100.00 E-value=3.9e-58 Score=473.25 Aligned_cols=180 Identities=33% Similarity=0.607 Sum_probs=164.6
Q ss_pred ceEEEeeCCCCCChHHHHHHHHHHhCCccccccCCCCCCCceEeEEEecccccchhhhcCCCcEEEEEEEEcccccCCCC
Q 009707 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSGVFRLGEATSTWDA 388 (528)
Q Consensus 309 GgIL~VdKP~G~TS~dVV~klRrlL~ikKVGHaGTLDP~ATGVLVVgVGkATKLl~~l~~~~K~Y~at~~LG~eTDT~D~ 388 (528)
+|||+||||.|||||+||++||++++.+||||+|||||+||||||||+|+|||+++|+++.+|+|+|+++||.+|+
T Consensus 59 ~Gil~ldKP~G~TS~dvv~~vrr~l~~kKvGH~GTLDP~AtGvL~v~iG~aTKl~~~l~~~~K~Y~a~~~lG~~~~---- 134 (400)
T 3u28_A 59 SGVINLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVCIVRLHDALK---- 134 (400)
T ss_dssp TEEEEEEECSSSCHHHHHHHHHHHHTCSCEEESSCCCTTCEEEEEEEEGGGGGGHHHHHHSCEEEEEEEEESSCCS----
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCcCcccccCCCCCCCeEEEEEEEChHHhHhHHhcCCCcEEEEEEEeCCCCC----
Confidence 5699999999999999999999999999999999999999999999999999999999999999999999998753
Q ss_pred CCCeEeeccCCCCCHHHHHHHHHhCccceeecCCcccccccCChhhHHHHhcCcccccCCceEEEEEEEeeeccCCCceE
Q 009707 389 DSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQNL 468 (528)
Q Consensus 389 eGkVie~~p~~hIT~e~LekaL~kF~G~i~QvPP~YSAVKVnGKRAYELARkGe~VELkpR~V~IyeleL~~~l~~~p~~ 468 (528)
+.++|+++|++|+|.|+|+||+|||||++ +|.|+||+++++.+....+.+
T Consensus 135 -------------~~~~i~~~l~~f~G~i~Q~PP~ySAvK~~-----------------~R~v~I~~i~ll~~~~~~~~~ 184 (400)
T 3u28_A 135 -------------DEKDLGRSLENLTGALFQRPPLISAVKRQ-----------------LRVRTIYESNLIEFDNKRNLG 184 (400)
T ss_dssp -------------STTHHHHHHHHTCEEEEECCC-----CCC-----------------CEEEEEEEEEEEEEETTTTEE
T ss_pred -------------CHHHHHHHHHhCcCceEEECCceecccCC-----------------ceeEEEEEEEEEEEcCCCceE
Confidence 47899999999999999999999999963 688999999998875445789
Q ss_pred EEEEEecCCccHHHHHHHHHHHhcccceecceEEEEEeccCcccc-cCHHHHHHH
Q 009707 469 IFRVTCSKGTYIRSLCADFGKALGSCAHLTALRRDSIGQYSADDA-WEFKELEEA 522 (528)
Q Consensus 469 tfeV~CSkGTYIRSLa~DIG~aLGt~AhLt~LRRTriG~FtLddA-~tLedL~~~ 522 (528)
+|+|+||+||||||||+|||.+|||+|||++||||++|+|+++++ +||++|.++
T Consensus 185 ~~~V~CskGTYIRsL~~DiG~~LG~gahm~~LrRt~~G~F~~~~a~vtL~~l~~~ 239 (400)
T 3u28_A 185 VFWASCEAGTYMRTLCVHLGMLLGVGGHMQELRRVRSGALSENDNMVTLHDVMDA 239 (400)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHSSCEEEEEEEEEEETTEETTSSCBCHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEEEEEcCcchhhhcCCHHHHHHh
Confidence 999999999999999999999999999999999999999999986 899999864
No 5
>2aus_C Pseudouridine synthase; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_A 3lwo_A* 3lwq_A* 3lwp_A 3lwv_A 3hax_A* 2hvy_A* 3hay_A* 2ey4_A 2rfk_A 3mqk_A 3hjw_A* 3hjy_A
Probab=100.00 E-value=1.2e-57 Score=459.55 Aligned_cols=179 Identities=34% Similarity=0.560 Sum_probs=159.7
Q ss_pred CceEEEeeCCCCCChHHHHHHHHHHhCCccccccCCCCCCCceEeEEEecccccchhhhcCCCcEEEEEEEEcccccCCC
Q 009707 308 FGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSGVFRLGEATSTWD 387 (528)
Q Consensus 308 ~GgIL~VdKP~G~TS~dVV~klRrlL~ikKVGHaGTLDP~ATGVLVVgVGkATKLl~~l~~~~K~Y~at~~LG~eTDT~D 387 (528)
.+|||+||||.|||||+||++||++++.+||||+|||||+|||||+||+|+|||+++++++.+|+|+++++||.
T Consensus 45 ~~Gil~vdKP~g~tS~~vv~~vr~~~~~~KvGH~GTLDP~atGvL~v~~g~aTk~~~~l~~~~K~Y~~~~~lg~------ 118 (334)
T 2aus_C 45 QYGVINLDKPPGPTSHEVVAWIKRILNLEKAGHGGTLDPKVSGVLPVALERATRVVQALLPAGKEYVALMHLHG------ 118 (334)
T ss_dssp HTEEEEEEECSSSCHHHHHHHHHHHTTCSCEEESSCCCTTCEEEEEEEEGGGGGGGGGGTTCCEEEEEEEEESS------
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHhCcceeccccccCCccceeEEEEeChhhhhHHHhcccCcEEEEEEEECC------
Confidence 36799999999999999999999999999999999999999999999999999999999999999999999994
Q ss_pred CCCCeEeeccCCCCCHHHHHHHHHhCccceeecCCcccccccCChhhHHHHhcCcccccCCceEEEEEEEeeeccCCCce
Q 009707 388 ADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQN 467 (528)
Q Consensus 388 ~eGkVie~~p~~hIT~e~LekaL~kF~G~i~QvPP~YSAVKVnGKRAYELARkGe~VELkpR~V~IyeleL~~~l~~~p~ 467 (528)
++|.++|++++++|+|+|+|+||+|||+|+ ++|+|+||+++++.+ +.+.
T Consensus 119 ------------~~~~~~i~~~l~~f~G~i~Q~pP~~SA~k~-----------------~~R~v~I~~~~~~~~--~~~~ 167 (334)
T 2aus_C 119 ------------DVPEDKIRAVMKEFEGEIIQRPPLRSAVKR-----------------RLRTRKVYYIEILEI--DGRD 167 (334)
T ss_dssp ------------CCCHHHHHHHHHHTSEEEECC-----------------------------EEEEEEEEEEEE--ETTE
T ss_pred ------------CCCHHHHHHHHHhCcCeEEEeCCccccCcC-----------------CcCCEEEEEEEEEEe--eCCe
Confidence 478999999999999999999999999993 479999999999876 4689
Q ss_pred EEEEEEecCCccHHHHHHHHHHHhcccceecceEEEEEeccCccc-ccCHHHHHHHH
Q 009707 468 LIFRVTCSKGTYIRSLCADFGKALGSCAHLTALRRDSIGQYSADD-AWEFKELEEAI 523 (528)
Q Consensus 468 ~tfeV~CSkGTYIRSLa~DIG~aLGt~AhLt~LRRTriG~FtLdd-A~tLedL~~~i 523 (528)
++|+|+||+||||||||||||.+|||+|||++||||++|+|++++ |++|++|.++.
T Consensus 168 ~~~~v~cs~GTYIRsL~~Dig~~Lg~~a~~~~LrRt~~g~f~~~~~~~~l~~l~~~~ 224 (334)
T 2aus_C 168 VLFRVGVEAGTYIRSLIHHIGLALGVGAHMAELRRTRSGPFKEDETLVTLHDLVDYY 224 (334)
T ss_dssp EEEEEEECTTCCHHHHHHHHHHHHSSCEEEEEEEEEEETTEESSTTEECHHHHHHHH
T ss_pred EEEEEEECCCcHHHHHHHHHHHHhCCCEEEeEEEEEEEccCchhhcccCHHHHHhhh
Confidence 999999999999999999999999999999999999999999999 79999998753
No 6
>2apo_A Probable tRNA pseudouridine synthase B; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: b.122.1.1 d.265.1.2
Probab=100.00 E-value=1.7e-57 Score=462.97 Aligned_cols=179 Identities=37% Similarity=0.625 Sum_probs=161.0
Q ss_pred CceEEEeeCCCCCChHHHHHHHHHHhCCccccccCCCCCCCceEeEEEecccccchhhhcCCCcEEEEEEEEcccccCCC
Q 009707 308 FGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSGVFRLGEATSTWD 387 (528)
Q Consensus 308 ~GgIL~VdKP~G~TS~dVV~klRrlL~ikKVGHaGTLDP~ATGVLVVgVGkATKLl~~l~~~~K~Y~at~~LG~eTDT~D 387 (528)
.+|||+||||.|||||+||++||++++.+||||+|||||+||||||||+|+|||+++++++.+|+|+++++||.
T Consensus 65 ~~Gil~vdKP~G~TS~~vv~~vr~~l~~~KvGH~GTLDP~AtGvL~v~~G~aTk~~~~l~~~~K~Y~~~~~lG~------ 138 (357)
T 2apo_A 65 KYGVVVVDKPRGPTSHEVSTWVKKILNLDKAGHGGTLDPKVTGVLPVALERATKTIPMWHIPPKEYVCLMHLHR------ 138 (357)
T ss_dssp HTEEEEEEECSSSCHHHHHHHHHHHTTCSCEEESSCCCTTCEEEEEEEEGGGGGGGGGTTSSCEEEEEEEEESS------
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHhCccccccccccCCCceeEEEEEeCHHHhHHHHhccCCcEEEEEEEECC------
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999994
Q ss_pred CCCCeEeeccCCCCCHHHHHHHHHhCccceeecCCcccccccCChhhHHHHhcCcccccCCceEEEEEEEeeeccCCCce
Q 009707 388 ADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLEDRQN 467 (528)
Q Consensus 388 ~eGkVie~~p~~hIT~e~LekaL~kF~G~i~QvPP~YSAVKVnGKRAYELARkGe~VELkpR~V~IyeleL~~~l~~~p~ 467 (528)
++|.++|++++++|+|+|+|+||+|||+|. ++|+|+||+++++.+ +.+.
T Consensus 139 ------------~~~~~~i~~~l~~f~G~i~Q~PP~~SAvK~-----------------~~R~v~I~~~~l~~~--~~~~ 187 (357)
T 2apo_A 139 ------------DASEEDILRVFKEFTGRIYQRPPLKAAVKR-----------------RLRIRKIHELELLDK--DGKD 187 (357)
T ss_dssp ------------CCCHHHHHHHHHHHSEEEECC----------------------------CEEEEEEEEEEEE--ETTE
T ss_pred ------------CCCHHHHHHHHHhCcccEEEeCCchhhccc-----------------cccceeEEEEEEEEe--eCCE
Confidence 478999999999999999999999999993 479999999999876 4689
Q ss_pred EEEEEEecCCccHHHHHHHHHHHhcccceecceEEEEEeccCcccccCHHHHHHHH
Q 009707 468 LIFRVTCSKGTYIRSLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFKELEEAI 523 (528)
Q Consensus 468 ~tfeV~CSkGTYIRSLa~DIG~aLGt~AhLt~LRRTriG~FtLddA~tLedL~~~i 523 (528)
++|+|+||+||||||||+|||.+|||+|||++||||++|+|++++|++|++|.++.
T Consensus 188 ~~~~v~cs~GTYIRsL~~DiG~~LG~~a~~~~LrRt~~G~f~~~~a~tl~~l~~~~ 243 (357)
T 2apo_A 188 VLFRVKCQSGTYIRKLCEDIGEALGTSAHMQELRRTKSGCFEEKDAVYLQDLLDAY 243 (357)
T ss_dssp EEEEEEECTTCCHHHHHHHHHHHTTSCEEEEEEEEEEETTEEGGGCBCHHHHHHHH
T ss_pred EEEEEEECCCchHHHHHHHHHHhhCCCEEEEEEEEEEEccCcHHHccCHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999998753
No 7
>2v9k_A Uncharacterized protein FLJ32312; pseudouridine synthase, PUS10, RNA modification, thump domai; HET: EPE; 2.0A {Homo sapiens}
Probab=98.78 E-value=1.8e-08 Score=107.85 Aligned_cols=102 Identities=22% Similarity=0.326 Sum_probs=84.6
Q ss_pred CCCcEEEEEEEEcccccCCCCCCCeEeeccCCCCCHHHHHHHHHhCcc-ceeecCCcccccccCChhhHHHHhcCccccc
Q 009707 368 GMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRG-EIWQVPPMFSAIKVGGEKMYDKARRGESIEL 446 (528)
Q Consensus 368 ~~~K~Y~at~~LG~eTDT~D~eGkVie~~p~~hIT~e~LekaL~kF~G-~i~QvPP~YSAVKVnGKRAYELARkGe~VEL 446 (528)
...|+|.|.+.+.. .++.++|+.+.. |.| .|.|.||.=++.+.. +
T Consensus 410 ~~~K~Y~alv~~~~------------------~v~~e~l~~~~~-l~~l~I~QrtP~RV~hRR~---------------~ 455 (530)
T 2v9k_A 410 EKTKTYSALIWTNK------------------AIQKKDIEFLND-IKDLKIDQKTPLRVLHRRP---------------L 455 (530)
T ss_dssp HCCEEEEEEEEESS------------------CCCHHHHGGGGG-CCSEEEEEECCGGGTTTSC---------------C
T ss_pred cCCeEEEEEEEEcC------------------CCCHHHHHHHHh-cCCceeeccCCeEEEEecC---------------C
Confidence 45899999998764 377899998877 999 999999998887542 3
Q ss_pred CCceEEEEEEEeeeccCCCceEEEEEEecCCccHHHHHH-H-------HHHHhcccceecceEEEEE
Q 009707 447 SPRRISIFQFDIERSLEDRQNLIFRVTCSKGTYIRSLCA-D-------FGKALGSCAHLTALRRDSI 505 (528)
Q Consensus 447 kpR~V~IyeleL~~~l~~~p~~tfeV~CSkGTYIRSLa~-D-------IG~aLGt~AhLt~LRRTri 505 (528)
..|.-.||++++... +...|.|+|.|..|||||-||| | ||..||+.|+|.+|==+.+
T Consensus 456 ~~R~R~I~~i~~~~~--~~~~~~l~i~~eaGtYIKelvhGD~GRT~Psl~~lLg~~a~i~eLDV~~V 520 (530)
T 2v9k_A 456 AVRARVIHFMETQYV--DEHHFRLHLKTQAGTYIKEFVHGDFGRTKPNIGSLMNVTADILELDVESV 520 (530)
T ss_dssp CEEEEEEEEEEEEEE--ETTEEEEEEEECTTCCHHHHHHCTTTTEESCHHHHHTSCEEEEEEEEEEE
T ss_pred CccceEEEEEEEEEe--cCCEEEEEEEecCCCEEEEEEcCCCCCcCCcHHHHhCCCcEEEEeEEeEE
Confidence 346667999988765 3468999999999999999999 7 9999999999999965543
No 8
>3dh3_A Ribosomal large subunit pseudouridine synthase F; protein-RNA complex, S4 domain, alpha/beta protein, isomerase, RNA-binding, rRNA processing; HET: FHU; 3.00A {Escherichia coli}
Probab=98.60 E-value=1.5e-07 Score=93.49 Aligned_cols=150 Identities=21% Similarity=0.268 Sum_probs=99.6
Q ss_pred eEEEeeCCCCCChH-------HHHHHHHHHhCCccccccCCCCCCCceEeEEEecc--cccchhhhcCCCcEEEEEEEEc
Q 009707 310 TMVLVNKPKGWTSF-------TVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGK--ATKLVDRYQGMIKGYSGVFRLG 380 (528)
Q Consensus 310 gIL~VdKP~G~TS~-------dVV~klRrlL~ikKVGHaGTLDP~ATGVLVVgVGk--ATKLl~~l~~~~K~Y~at~~LG 380 (528)
.+|+||||.|+.|| .+++.+.. ..++.+.|.||-.+||||+++-+. +.++..--....|+|.|.+.
T Consensus 68 ~~lvvnKP~G~~~~~~~~~~~tl~~~l~~---~~~~~~VhRLD~dTSGLllla~d~~~~~~L~~~~~~v~K~Y~a~V~-- 142 (290)
T 3dh3_A 68 VLIALNKPVGIVSTTEDGERDNIVDFVNH---SKRVFPIGRLDKDSQGLIFLTNHGDLVNKILRAGNDHEKEYLVTVD-- 142 (290)
T ss_dssp CEEEEEECTTCBCCCCSSCTTBHHHHHTC---SSCCEESSCCCTTCEEEEEEESCTTHHHHHHCGGGCCCEEEEEEES--
T ss_pred eEEEEECCCccccCCCCCCCCcHHHHhhc---cCceeeeccCCCCCcceEEEcCCHHHHHHHHHhhCCcCEEEEEEEC--
Confidence 48999999999887 46666543 457899999999999999999865 34444434456999999863
Q ss_pred ccccCCCCCCCeEeeccCCCCCHHHHHHHHHhCccceeecCCcccccccCChhhHHHHhcCcccccCCceEEEEEEEeee
Q 009707 381 EATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIER 460 (528)
Q Consensus 381 ~eTDT~D~eGkVie~~p~~hIT~e~LekaL~kF~G~i~QvPP~YSAVKVnGKRAYELARkGe~VELkpR~V~IyeleL~~ 460 (528)
| .++.+.++... ..+.++|. ...+..+. ..
T Consensus 143 ---------G---------~~~~~~i~~l~--------------~Gv~l~~~------------~~~~~~v~-----~~- 172 (290)
T 3dh3_A 143 ---------K---------PITEEFIRGMS--------------AGVPILGT------------VTKKCKVK-----KE- 172 (290)
T ss_dssp ---------S---------CCCHHHHHHHH--------------TCCBCSSS------------BCCCCEEE-----EC-
T ss_pred ---------C---------CCCHHHHHHHh--------------cCcccCCc------------ccceEEEE-----Ec-
Confidence 2 34555554321 12223322 11233222 11
Q ss_pred ccCCCceEEEEEEecCCccHHHHHHHHHHHhcccceecceEEEEEeccCcccc-------cCHHHHHHHH
Q 009707 461 SLEDRQNLIFRVTCSKGTYIRSLCADFGKALGSCAHLTALRRDSIGQYSADDA-------WEFKELEEAI 523 (528)
Q Consensus 461 ~l~~~p~~tfeV~CSkGTYIRSLa~DIG~aLGt~AhLt~LRRTriG~FtLddA-------~tLedL~~~i 523 (528)
....+.|.++.++---||-++..||.. +..|.|+++|++++++- ++-+||....
T Consensus 173 ---~~~~l~l~l~tGR~HQIR~~~~~lG~p------V~~L~R~~iG~l~L~~L~~G~~R~Lt~~Ei~~l~ 233 (290)
T 3dh3_A 173 ---APFVFRITLVQGLNRQIRRMCEHFGYE------VKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLF 233 (290)
T ss_dssp ---SSSEEEEEESCCCTTHHHHHHHHTTCC------EEEEEEEEETTEECTTCCTTCEEECCHHHHHHHH
T ss_pred ---CCeEEEEEEeCCCChHHHHHHHHcCCe------EEEeEEEEECCEecCCCCCCCcEECCHHHHHHHH
Confidence 123455555556666899988876543 79999999999999865 6777776654
No 9
>1v9k_A Ribosomal large subunit pseudouridine synthase C; pseudouridine syntase, RNA binding, lyase; 2.00A {Escherichia coli} SCOP: d.265.1.3 PDB: 1xpi_A
Probab=97.59 E-value=5.3e-05 Score=71.78 Aligned_cols=72 Identities=26% Similarity=0.411 Sum_probs=56.7
Q ss_pred eEEEeeCCCCCChH-------HHHHHHHHHhC-CccccccCCCCCCCceEeEEEecccc--cchhhhcC--CCcEEEEEE
Q 009707 310 TMVLVNKPKGWTSF-------TVCGKLRRLVK-VKKVGHAGTLDPMATGLLIVCVGKAT--KLVDRYQG--MIKGYSGVF 377 (528)
Q Consensus 310 gIL~VdKP~G~TS~-------dVV~klRrlL~-ikKVGHaGTLDP~ATGVLVVgVGkAT--KLl~~l~~--~~K~Y~at~ 377 (528)
.+++||||+|+.+| .++..++..++ ...++..|.||-..||||+++-+..+ ++...+.+ ..|+|.|.+
T Consensus 10 ~~lvvnKP~G~~~~~~~~~~~~l~~~l~~~~~~~~~~~~VhRLD~~TSGlll~ak~~~~~~~l~~~~~~~~v~K~Y~a~v 89 (228)
T 1v9k_A 10 HILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALV 89 (228)
T ss_dssp SEEEEEECTTSCSSCCSSSBCCHHHHHHHHSTTCSCCEESSCCCTTCEEEEEEESSHHHHHHHHHHHHTTCSEEEEEEEE
T ss_pred CEEEEECCCCCeEecCCChHHHHHHHHHHHcCCCCccceEecCCCCCeEEEEEEeCHHHHHHHHHHHHhCCeeEEEEEEE
Confidence 48999999999887 47888877665 35789999999999999999997753 34555544 489999987
Q ss_pred EEccc
Q 009707 378 RLGEA 382 (528)
Q Consensus 378 ~LG~e 382 (528)
. |.-
T Consensus 90 ~-G~~ 93 (228)
T 1v9k_A 90 R-GQW 93 (228)
T ss_dssp E-SCC
T ss_pred e-ccc
Confidence 5 543
No 10
>2gml_A Ribosomal large subunit pseudouridine synthase F; RLUF, ribosome, RNA modifying enzyme, isomerase; 2.60A {Escherichia coli}
Probab=97.57 E-value=8.3e-05 Score=72.40 Aligned_cols=147 Identities=25% Similarity=0.343 Sum_probs=90.1
Q ss_pred eEEEeeCCCCCChHH-------HHHHHHHHhCCccccccCCCCCCCceEeEEEecc-cc-cchhhhcCCCcEEEEEEEEc
Q 009707 310 TMVLVNKPKGWTSFT-------VCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGK-AT-KLVDRYQGMIKGYSGVFRLG 380 (528)
Q Consensus 310 gIL~VdKP~G~TS~d-------VV~klRrlL~ikKVGHaGTLDP~ATGVLVVgVGk-AT-KLl~~l~~~~K~Y~at~~LG 380 (528)
-+|+||||.|+.|+. |++.+. ...++...|-||-.+||||+++-.. .. +|..--....|+|.|.+.
T Consensus 15 ~~lvlnKPaG~vs~~~~~~~~tv~dll~---~~~rl~~VgRLD~dTSGLLLlT~dg~~a~~L~~p~~~v~K~Y~a~V~-- 89 (237)
T 2gml_A 15 VLIALNKPVGIVSTTEDGERDNIVDFVN---HSKRVFPIGRLDKDSQGLIFLTNHGDLVNKILRAGNDHEKEYLVTVD-- 89 (237)
T ss_dssp CEEEEEECTTCBCCSSSSCSSBHHHHSC---CSSCCEEESCCCTTCEEEEEEESCHHHHHHHHHHHHHSCEEEEEEES--
T ss_pred EEEEEECCCCCEeCCCCCCCCCHHHHhh---ccCCeeEecCCCCCCeeEEEEEcCHHHHHHHhCccCCCCEEEEEEEc--
Confidence 489999999996652 333332 1246889999999999999998744 33 333322346999999864
Q ss_pred ccccCCCCCCCeEeeccCCCCCHHHHHHHHHhCccceeecCCcccccccCChhhHHHHhcCcccccCCceEEEEEEEeee
Q 009707 381 EATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIER 460 (528)
Q Consensus 381 ~eTDT~D~eGkVie~~p~~hIT~e~LekaL~kF~G~i~QvPP~YSAVKVnGKRAYELARkGe~VELkpR~V~IyeleL~~ 460 (528)
| .++.+.++.. . . .+.++|. ...+..+.+ +.
T Consensus 90 ---------G---------~~~~~~i~~l-~--~-----------Gv~l~~~------------~~~~a~~~~-----l~ 120 (237)
T 2gml_A 90 ---------K---------PITEEFIRGM-S--A-----------GVPILGT------------VTKKCKVKK-----EA 120 (237)
T ss_dssp ---------S---------CCCHHHHHHH-S--S-----------CCEETTE------------ECCCCEEEE-----EE
T ss_pred ---------c---------cCCHHHHHHH-H--c-----------CeEeCCc------------ccccEEEEE-----eC
Confidence 2 2445555431 1 1 1222221 122333322 11
Q ss_pred ccCCCceEEEEEEecCCc--cHHHHHHHHHHHhcccceecceEEEEEeccCcccc-------cCHHHHHHH
Q 009707 461 SLEDRQNLIFRVTCSKGT--YIRSLCADFGKALGSCAHLTALRRDSIGQYSADDA-------WEFKELEEA 522 (528)
Q Consensus 461 ~l~~~p~~tfeV~CSkGT--YIRSLa~DIG~aLGt~AhLt~LRRTriG~FtLddA-------~tLedL~~~ 522 (528)
.-.++|..-.|. =||-++..||. -+..|.|+++|++++++- ++-+|+...
T Consensus 121 ------~s~l~i~L~tGR~HQIRr~~a~lG~------pV~~L~R~~iG~l~L~~L~~G~~R~Lt~~E~~~l 179 (237)
T 2gml_A 121 ------PFVFRITLVQGLNRQIRRMCEHFGY------EVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDL 179 (237)
T ss_dssp ------TTEEEEEECCCSTTHHHHHHHHTTC------CEEEEEEEEETTEECTTCCTTCEEECCHHHHHHH
T ss_pred ------CEEEEEEEecCCcHHHHHHHHHcCC------CEeeeEEEEECCEecCCCCCCCEEECCHHHHHHH
Confidence 123566666665 68877766553 358899999999999754 566666554
No 11
>2i82_A Ribosomal large subunit pseudouridine synthase A; lyase/RNA complex; HET: FOU; 2.05A {Escherichia coli}
Probab=96.83 E-value=0.00086 Score=63.03 Aligned_cols=70 Identities=26% Similarity=0.422 Sum_probs=53.0
Q ss_pred ceEEEeeCCCCCChHH---------HHHHHHHHhCCccccccCCCCCCCceEeEEEeccc-c-cchhhhcC--CCcEEEE
Q 009707 309 GTMVLVNKPKGWTSFT---------VCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKA-T-KLVDRYQG--MIKGYSG 375 (528)
Q Consensus 309 GgIL~VdKP~G~TS~d---------VV~klRrlL~ikKVGHaGTLDP~ATGVLVVgVGkA-T-KLl~~l~~--~~K~Y~a 375 (528)
..+++||||+|+-+|. +++.++..+ .+++..|.||-..||||+++-+.. . ++...+.+ ..|+|.|
T Consensus 19 ~~~lvvnKP~G~~~~~~~~~~~~~tl~~~l~~~~--~~~~~vhRLD~~TSGlll~ak~~~~~~~l~~~f~~~~v~K~Y~a 96 (217)
T 2i82_A 19 DHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDY--PQAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVA 96 (217)
T ss_dssp SSEEEEEECTTSBSSCCSSGGGCCBHHHHHHHHC--TTCEESSCCCTTCEEEEEEESSHHHHHHHHHHHHTTCSEEEEEE
T ss_pred CCEEEEECCCCCeEeCCCCCCchhHHHHHHHHHC--CCCceeecCCCCCeEEEEEEeCHHHHHHHHHHHHhCCeeEEEEE
Confidence 3489999999997652 566676655 367889999999999999999764 3 44454544 4899999
Q ss_pred EEEEcc
Q 009707 376 VFRLGE 381 (528)
Q Consensus 376 t~~LG~ 381 (528)
.+. |.
T Consensus 97 ~v~-G~ 101 (217)
T 2i82_A 97 RVW-GH 101 (217)
T ss_dssp EEE-SC
T ss_pred EEe-cc
Confidence 876 54
No 12
>1vio_A Ribosomal small subunit pseudouridine synthase A; structural genomics, lyase; 1.59A {Haemophilus influenzae} SCOP: d.265.1.3 d.66.1.5
Probab=96.83 E-value=0.00023 Score=67.87 Aligned_cols=67 Identities=21% Similarity=0.290 Sum_probs=48.2
Q ss_pred EEEeeCCCCCChHH-------HHHHHHHHhCCccccccCCCCCCCceEeEEEecc--cccchhhhcCCCcEEEEEEE
Q 009707 311 MVLVNKPKGWTSFT-------VCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGK--ATKLVDRYQGMIKGYSGVFR 378 (528)
Q Consensus 311 IL~VdKP~G~TS~d-------VV~klRrlL~ikKVGHaGTLDP~ATGVLVVgVGk--ATKLl~~l~~~~K~Y~at~~ 378 (528)
+++||||+|+.++. +++.+...++ .+++..|.||-..||||+++-+. +.+++.--....|+|.|.+.
T Consensus 64 ~lvvnKP~G~~~~~~~~~~~tl~~~l~~~~~-~~~~~vhRLD~~TsGlll~ak~~~~a~~l~~~~~~v~K~Y~a~v~ 139 (243)
T 1vio_A 64 YFMLNKPQGCVCSNDDGDYPTIYQFFDYPLA-GKLHSAGRLDVDTTGLVLLTDDGQWSHRITSPKHHCEKTYLVTLA 139 (243)
T ss_dssp EEEEEECTTCBSSCCC--CCBGGGGSCTTGG-GGCEESSCCCTTCEEEEEEESCHHHHHHHHCTTSCCCEEEEEEES
T ss_pred EEEEECCCCCEeCCCCCCCCcHHHHHhHHhc-CCEeEccCCCCCCeEEEEEEECHHHHHHHhCCCCCCCEEEEEEEe
Confidence 89999999998872 3333332221 25788999999999999999975 34444322335899999864
No 13
>2oml_A Ribosomal large subunit pseudouridine synthase E; bifurcated beta sheet, thrombin-cleaved, isomerase; 1.20A {Escherichia coli}
Probab=96.82 E-value=0.00037 Score=64.09 Aligned_cols=78 Identities=23% Similarity=0.207 Sum_probs=49.6
Q ss_pred CCCCCCCCCCceEEEeeCCCCCChHHHHH----HHHHHhCCccccccCCCCCCCceEeEEEeccc-ccch-hhhcCCCcE
Q 009707 299 ELPPTWDGPFGTMVLVNKPKGWTSFTVCG----KLRRLVKVKKVGHAGTLDPMATGLLIVCVGKA-TKLV-DRYQGMIKG 372 (528)
Q Consensus 299 ~~p~~~~~~~GgIL~VdKP~G~TS~dVV~----klRrlL~ikKVGHaGTLDP~ATGVLVVgVGkA-TKLl-~~l~~~~K~ 372 (528)
+.+-.+++. .+++||||+|+.+|.--. -+-..+...+++..|-||-..||||+++-+.. .+.+ ..-....|+
T Consensus 3 ~~~ilyed~--~~lvvnKP~G~~~~~~~~~~~~tl~~~l~~~~~~~vhRLD~~TSGlll~ak~~~~~~~l~~~~~~v~K~ 80 (189)
T 2oml_A 3 RRKPENQPT--RVILFNKPYDVLPQFTDEAGRKTLKEFIPVQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKI 80 (189)
T ss_dssp -----CCCC--CEEEEEECTTBCSCSSCCTTCBCGGGTCCCSSCEESSCCCTTCEEEEEEESCHHHHHHHHSTTSCCCEE
T ss_pred ccccccCCC--eEEEEECCCCCEecCCCCCCCCCHHHHcCCCCceECCCCCCCCeeEEEEEcCHHHHHHHhCccCCCcEE
Confidence 344555543 389999999998763111 11122323467889999999999999998663 3333 332345899
Q ss_pred EEEEEE
Q 009707 373 YSGVFR 378 (528)
Q Consensus 373 Y~at~~ 378 (528)
|.|.+.
T Consensus 81 Y~a~v~ 86 (189)
T 2oml_A 81 YYVQVE 86 (189)
T ss_dssp EEEEEE
T ss_pred EEEEEc
Confidence 999875
No 14
>1ksk_A Ribosomal small subunit pseudouridine synthase A; RSUA, lyase; 2.00A {Escherichia coli} SCOP: d.265.1.3 d.66.1.5 PDB: 1ksl_A 1ksv_A*
Probab=96.74 E-value=0.00027 Score=66.84 Aligned_cols=68 Identities=26% Similarity=0.293 Sum_probs=48.6
Q ss_pred eEEEeeCCCCCChHH-------HHHHHHHHhCCccccccCCCCCCCceEeEEEecc-c-ccchhhhcCCCcEEEEEEE
Q 009707 310 TMVLVNKPKGWTSFT-------VCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGK-A-TKLVDRYQGMIKGYSGVFR 378 (528)
Q Consensus 310 gIL~VdKP~G~TS~d-------VV~klRrlL~ikKVGHaGTLDP~ATGVLVVgVGk-A-TKLl~~l~~~~K~Y~at~~ 378 (528)
.+++||||+|+.+|. +++.+...++ .+++..|.||-.+||||+++-+. + .+++.--....|+|.|.+.
T Consensus 64 ~~lvvnKP~G~~~~~~~~~~~tl~~~l~~~~~-~~~~~vhRLD~~TsGlll~ak~~~~~~~l~~~~~~v~K~Y~a~v~ 140 (234)
T 1ksk_A 64 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVA-WKLHAAGRLDIDTTGLVLMTDDGQWSHRITSPRHHCEKTYLVTLE 140 (234)
T ss_dssp CEEEEEECTTCBSSSSCSSSCBGGGGCCCTTG-GGCEESSCCCTTCEEEEEEESCHHHHHHHHCTTSCCCEEEEEEES
T ss_pred EEEEEECCCCCEeCCCCCCCCcHHHHhhhhhc-CCeeEcCCCCCCCeeEEEEEcCHHHHHHHhCCCCCCCeEEEEEEc
Confidence 489999999998873 3333332221 26788999999999999999985 3 3444322345899999864
No 15
>1v9f_A Ribosomal large subunit pseudouridine synthase D; RNA binding, lyase; 1.70A {Escherichia coli} SCOP: d.265.1.3 PDB: 2ist_A 1qyu_A 1prz_A
Probab=96.71 E-value=0.0013 Score=65.24 Aligned_cols=73 Identities=27% Similarity=0.444 Sum_probs=53.6
Q ss_pred ceEEEeeCCCCCChH--------HHHHHHHHHh----CCccccccCCCCCCCceEeEEEeccc-c-cchhhhcC--CCcE
Q 009707 309 GTMVLVNKPKGWTSF--------TVCGKLRRLV----KVKKVGHAGTLDPMATGLLIVCVGKA-T-KLVDRYQG--MIKG 372 (528)
Q Consensus 309 GgIL~VdKP~G~TS~--------dVV~klRrlL----~ikKVGHaGTLDP~ATGVLVVgVGkA-T-KLl~~l~~--~~K~ 372 (528)
..+++||||+|+.+| .+++.+...+ +..+++..|.||-..||||+++-+.. . ++...+.. ..|+
T Consensus 90 ~~~lvvnKP~G~~~~~~~~~~~~tl~~~l~~~~~~~~~~~~~~~vhRLD~~TSGlll~ak~~~~~~~l~~~~~~~~v~K~ 169 (325)
T 1v9f_A 90 EDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITRE 169 (325)
T ss_dssp SSEEEEEECSSCCSSCBTTBSSSSHHHHHHHHCGGGGGSGGGGBCCCCCTTCEEEEEEESSHHHHHHHHHHHHTTCSEEE
T ss_pred CCEEEEECCCCCeEecCCCCCCccHHHHHHHHHHhcCCCCceeeecCCCCCCeeEEEEEcCHHHHHHHHHHHHcCCeeEE
Confidence 348999999999765 3666665443 23478899999999999999999764 3 34444444 4899
Q ss_pred EEEEEEEccc
Q 009707 373 YSGVFRLGEA 382 (528)
Q Consensus 373 Y~at~~LG~e 382 (528)
|.|.+. |.-
T Consensus 170 Y~a~v~-G~~ 178 (325)
T 1v9f_A 170 YEAVAI-GHM 178 (325)
T ss_dssp EEEEEE-SCC
T ss_pred EEEEEe-CCC
Confidence 999875 543
No 16
>2olw_A Ribosomal large subunit pseudouridine synthase E; bifurcated beta sheet, isomerase; 1.60A {Escherichia coli}
Probab=96.26 E-value=0.00098 Score=63.07 Aligned_cols=76 Identities=24% Similarity=0.215 Sum_probs=49.4
Q ss_pred CCCCCCCCceEEEeeCCCCCChHHHHH----HHHHHhCCccccccCCCCCCCceEeEEEeccc-ccch-hhhcCCCcEEE
Q 009707 301 PPTWDGPFGTMVLVNKPKGWTSFTVCG----KLRRLVKVKKVGHAGTLDPMATGLLIVCVGKA-TKLV-DRYQGMIKGYS 374 (528)
Q Consensus 301 p~~~~~~~GgIL~VdKP~G~TS~dVV~----klRrlL~ikKVGHaGTLDP~ATGVLVVgVGkA-TKLl-~~l~~~~K~Y~ 374 (528)
+-.+++ ..+++||||+|+-+|..-. -+-..+...+++..|-||-..||||+++-+.. .+.+ .......|+|.
T Consensus 33 ~Ilyed--~~~lvvnKP~Gl~~~~~~~~~~~tl~~~l~~~~~~~VhRLDr~TSGllllAk~~~~~~~L~~~~~~v~K~Y~ 110 (217)
T 2olw_A 33 KPENQP--TRVILFNKPYDVLPQFTDEAGRKTLKEFIPVQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYY 110 (217)
T ss_dssp ----CC--CCEEEEEECTTBCSCSSCCTTSBCGGGTCCCCSCEESSCCCTTCEEEEEEESCHHHHHHHHCTTCCCCEEEE
T ss_pred ceEeeC--CcEEEEECCCCCEeccCCCCCCccHHHHhCcCCceECCCCCCCCeeEEEEEcCHHHHHHHHcccccCCEEEE
Confidence 334443 3489999999998873110 12222323468889999999999999998653 3333 32334589999
Q ss_pred EEEE
Q 009707 375 GVFR 378 (528)
Q Consensus 375 at~~ 378 (528)
|.+.
T Consensus 111 A~V~ 114 (217)
T 2olw_A 111 VQVE 114 (217)
T ss_dssp EEEE
T ss_pred EEEc
Confidence 9876
No 17
>1szw_A TRNA pseudouridine synthase D; novel fold, RNA modification, TRUD, structural proteomics in europe, spine, structural genomics; 2.00A {Escherichia coli} SCOP: d.265.1.4 PDB: 1si7_A 1sb7_A
Probab=40.21 E-value=35 Score=35.26 Aligned_cols=45 Identities=27% Similarity=0.415 Sum_probs=40.3
Q ss_pred EEEeeCCCCCChHHHHHHHHHHhCC--ccccccCCCCCCCceEeEEEe
Q 009707 311 MVLVNKPKGWTSFTVCGKLRRLVKV--KKVGHAGTLDPMATGLLIVCV 356 (528)
Q Consensus 311 IL~VdKP~G~TS~dVV~klRrlL~i--kKVGHaGTLDP~ATGVLVVgV 356 (528)
++.|.| .|++..++++.|.+.+|+ +.||.+|+=|-.|.-..-|+|
T Consensus 67 ~~~l~K-~n~~T~~a~~~Lak~lgi~~~~i~yAGlKDk~AvT~Q~~sv 113 (379)
T 1szw_A 67 LVRILK-NGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCA 113 (379)
T ss_dssp EEEEEE-SSSCHHHHHHHHHHHTTCCGGGEEESCCCCTTSEEEEEEEE
T ss_pred EEEEEE-cCCCHHHHHHHHHHHhCcCHHhEeECccccCCEEEEEEEEE
Confidence 556666 799999999999999987 699999999999999999996
No 18
>1z2z_A Probable tRNA pseudouridine synthase D; alpha-beta protein., structural genomics, PSI, protein structure initiative; 2.60A {Methanosarcina mazei}
Probab=22.13 E-value=84 Score=32.69 Aligned_cols=45 Identities=27% Similarity=0.487 Sum_probs=40.7
Q ss_pred EEEeeCCCCCChHHHHHHHHHHhCC--ccccccCCCCCCCceEeEEEe
Q 009707 311 MVLVNKPKGWTSFTVCGKLRRLVKV--KKVGHAGTLDPMATGLLIVCV 356 (528)
Q Consensus 311 IL~VdKP~G~TS~dVV~klRrlL~i--kKVGHaGTLDP~ATGVLVVgV 356 (528)
++.|.| .||+..++++.|.+.+|+ +.||.+||=|-.|.=..-|+|
T Consensus 51 ~f~l~K-~n~dT~~a~~~Lak~lgi~~~~i~yAG~KDk~AvT~Q~~sv 97 (446)
T 1z2z_A 51 IVELTK-RDWDTHHLTRTLSRILQVSQKRISVAGTKDKRALTTQKISI 97 (446)
T ss_dssp EEEEEE-ESCCHHHHHHHHHHHHTCCGGGEEESSCCCSSSEEEEEEEE
T ss_pred EEEEEE-cCCCHHHHHHHHHHHhCcChHhEeECccccCCeeEEEEEEE
Confidence 566666 799999999999999986 699999999999999999998
Done!