BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009708
(528 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224061230|ref|XP_002300381.1| predicted protein [Populus trichocarpa]
gi|222847639|gb|EEE85186.1| predicted protein [Populus trichocarpa]
Length = 527
Score = 869 bits (2245), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 426/530 (80%), Positives = 471/530 (88%), Gaps = 7/530 (1%)
Query: 3 MAQAVSLPRILVSTDASK-ALSKQAASTRKPRTSISTKKRAKVSPS---RRTQNLNLEVS 58
MAQ +SL + S + K SK KP+TS+ST+++A SP R+TQ LNL+VS
Sbjct: 1 MAQVLSL-HVFFSAEIHKVGPSKPLKRIHKPKTSLSTRRKATQSPQSPLRKTQKLNLQVS 59
Query: 59 PHRAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDI 118
PHRAVSAVRLMRI+ GGAFADLLN KGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDI
Sbjct: 60 PHRAVSAVRLMRIEMGGAFADLLNDKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDI 119
Query: 119 VGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPPYAVVDENVRL 178
VGGTIRWRRYLD+LI LCHDEK F SMEPLLLQILRIGFYEIVKLDMP YAVVDENVRL
Sbjct: 120 VGGTIRWRRYLDYLIGSLCHDEKAFRSMEPLLLQILRIGFYEIVKLDMPSYAVVDENVRL 179
Query: 179 AKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWT 238
AKV+LRPGAGN+VNGILRKLVLLK++NSLPLPKLEG+DRAQARALAT+YSHPVWMVRRWT
Sbjct: 180 AKVSLRPGAGNMVNGILRKLVLLKESNSLPLPKLEGDDRAQARALATLYSHPVWMVRRWT 239
Query: 239 KYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFIR 298
K LGQE+AIKLM+WNN +PSFSLRANS KGVTRADLVMQ N+LK VPHELSLHLD F+R
Sbjct: 240 KLLGQEKAIKLMMWNNDNPSFSLRANSGKGVTRADLVMQFNMLK--VPHELSLHLDHFVR 297
Query: 299 VKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLS 358
VKTGLQ VIQAGLLK+GLCAVQDESAGL+V+VV+PQPG SI+DCCAAPGGKTLYMAS +
Sbjct: 298 VKTGLQIVIQAGLLKQGLCAVQDESAGLIVSVVNPQPGDSIIDCCAAPGGKTLYMASQMH 357
Query: 359 GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSG 418
GQG++YAIDINKGRLRI+ ETAKLHQV+ VI TI +DLRTFA++ +K DKVLLDAPCSG
Sbjct: 358 GQGMLYAIDINKGRLRIVKETAKLHQVDGVITTIPSDLRTFAESYQLKSDKVLLDAPCSG 417
Query: 419 LGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVE 478
LGVLSKRADLRWNRRLED+EELK LQ+ELLDAAS+LVKPGGVLVYSTCSIDPEENEERV+
Sbjct: 418 LGVLSKRADLRWNRRLEDLEELKKLQEELLDAASILVKPGGVLVYSTCSIDPEENEERVD 477
Query: 479 AFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARLVRAF 528
AFLLRHPEF IDP D VP DFVTK GF+ SDP+KHS+DGAFAARL+R
Sbjct: 478 AFLLRHPEFRIDPVDRYVPPDFVTKRGFYSSDPVKHSMDGAFAARLIRTL 527
>gi|255563540|ref|XP_002522772.1| ribosomal RNA small subunit methyltransferase B, putative [Ricinus
communis]
gi|223538010|gb|EEF39623.1| ribosomal RNA small subunit methyltransferase B, putative [Ricinus
communis]
Length = 527
Score = 838 bits (2166), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 408/530 (76%), Positives = 460/530 (86%), Gaps = 7/530 (1%)
Query: 3 MAQAVSLPRILVSTDASKALS----KQAASTRKPRTSISTKKRAKVSPSRRTQNLNLEVS 58
MA +SL + +S D SK K + KP+ S+S ++ VSP ++TQ LNLEVS
Sbjct: 1 MAHVLSL-HVYLSADTSKTARCMPLKFSKRANKPKKSLSAPRKGPVSPLKKTQKLNLEVS 59
Query: 59 PHRAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDI 118
PHRAVSAVRLMRI+ GGAFADLLN+KGKGSG+NEMGYVERTLGFRTK+LDDRDLRLVTD+
Sbjct: 60 PHRAVSAVRLMRIEMGGAFADLLNEKGKGSGENEMGYVERTLGFRTKNLDDRDLRLVTDV 119
Query: 119 VGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPPYAVVDENVRL 178
VGGTIRWRR+LDHLIC L HDE TF SMEPLLLQILRIG YEIVKLDMPPYAVVDENVRL
Sbjct: 120 VGGTIRWRRFLDHLICSLFHDENTFRSMEPLLLQILRIGAYEIVKLDMPPYAVVDENVRL 179
Query: 179 AKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWT 238
AKVALRPGAGN+VNGILRKLVLLK+NNSLPLPKLEG+ RAQARALAT++SHPVWMVRRWT
Sbjct: 180 AKVALRPGAGNMVNGILRKLVLLKENNSLPLPKLEGDARAQARALATLHSHPVWMVRRWT 239
Query: 239 KYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFIR 298
KYLGQEEAI+LM+WNNSDPSFSLRAN KGVTR DLV +LNLLK VP+ELS + D F+R
Sbjct: 240 KYLGQEEAIRLMIWNNSDPSFSLRANGGKGVTRDDLVTRLNLLK--VPYELSPYSDHFVR 297
Query: 299 VKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLS 358
++TGLQ V+QAGLLKEG C+VQDESAGLVV++V+PQPG SI+DCCAAPGGKT+YMAS +
Sbjct: 298 MRTGLQIVLQAGLLKEGFCSVQDESAGLVVSIVNPQPGDSIIDCCAAPGGKTVYMASLME 357
Query: 359 GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSG 418
GQG+VYAIDINKGRLRIL ETAKLHQ++ VI + +DLR A+N +K DKVLLDAPCSG
Sbjct: 358 GQGMVYAIDINKGRLRILQETAKLHQIDGVITAVPSDLRVLAENYPMKSDKVLLDAPCSG 417
Query: 419 LGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVE 478
LGVLSKRADLRWNRR+ED+EELK LQDELLDAAS LVKPGG LVYSTCSIDPEENEERV+
Sbjct: 418 LGVLSKRADLRWNRRVEDLEELKNLQDELLDAASTLVKPGGFLVYSTCSIDPEENEERVD 477
Query: 479 AFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARLVRAF 528
AFLLRHPEF IDP D VP D VT+ GF+ S P+KHS+DGAFAARLV+A
Sbjct: 478 AFLLRHPEFQIDPVDRYVPPDLVTERGFYSSSPVKHSIDGAFAARLVKAL 527
>gi|225461943|ref|XP_002266112.1| PREDICTED: ribosomal RNA small subunit methyltransferase B [Vitis
vinifera]
gi|296089930|emb|CBI39749.3| unnamed protein product [Vitis vinifera]
Length = 525
Score = 830 bits (2143), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 417/527 (79%), Positives = 465/527 (88%), Gaps = 5/527 (0%)
Query: 3 MAQAVSLPRILVSTDASKALSK--QAASTRKPRTSISTKKRAKVSPSRRTQNLNLEVSPH 60
MAQ +S + +DA + SK + A TR P T+I T+ + RT +NLE+SPH
Sbjct: 1 MAQVLSFGLRIRCSDARRTSSKPLKVAKTR-PNTAIPTRSTGTRRNANRTYGVNLEISPH 59
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVG 120
RAVSAVRLMRI+ GGAFADLLN++GKGSGDNEMGYVERTLGFRT+DLDDRDLRLVTDIVG
Sbjct: 60 RAVSAVRLMRIELGGAFADLLNERGKGSGDNEMGYVERTLGFRTRDLDDRDLRLVTDIVG 119
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPPYAVVDENVRLAK 180
G+IRWRRYLDHLI LCHD KTF SMEPLLLQILRIGFYEIV LDMPPYAVVDENVRLAK
Sbjct: 120 GSIRWRRYLDHLIVSLCHDSKTFRSMEPLLLQILRIGFYEIVNLDMPPYAVVDENVRLAK 179
Query: 181 VALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKY 240
VALRPGAGN+VN ILRKLVLLK+ NSLPLPKLEG+DRAQARALAT+YSHPVWMVRRWTKY
Sbjct: 180 VALRPGAGNMVNAILRKLVLLKEKNSLPLPKLEGDDRAQARALATLYSHPVWMVRRWTKY 239
Query: 241 LGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFIRVK 300
LGQEEAIKLM+WNNS+PSFSLRANS KG TRADLVM+L +LK VPHELS HLD F+R++
Sbjct: 240 LGQEEAIKLMMWNNSEPSFSLRANSGKGFTRADLVMRLKMLK--VPHELSPHLDNFVRIR 297
Query: 301 TGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQ 360
TG+Q VIQA LLKEGLC+VQDESAGLVV+VVDPQPG+SI+DCCAAPGGKT++MASCLSGQ
Sbjct: 298 TGMQIVIQAQLLKEGLCSVQDESAGLVVSVVDPQPGESIIDCCAAPGGKTIFMASCLSGQ 357
Query: 361 GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLG 420
G+V+AIDINKGRLRI+ ETAKL V+ VI T+HADL TFA N+ VK DKVLLDAPCSGLG
Sbjct: 358 GMVHAIDINKGRLRIVKETAKLLLVDDVITTVHADLCTFAKNNPVKSDKVLLDAPCSGLG 417
Query: 421 VLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAF 480
VLSKRADLRWNR LEDME+LK LQDELLDAA++LVKPGGVLVYSTCSIDPEENEERV AF
Sbjct: 418 VLSKRADLRWNRSLEDMEQLKNLQDELLDAAAILVKPGGVLVYSTCSIDPEENEERVAAF 477
Query: 481 LLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARLVRA 527
L RHPEFSIDP VPSDFVT+ GF+FS+P+KH+LDGAFAARLVR+
Sbjct: 478 LQRHPEFSIDPVGRYVPSDFVTEGGFYFSNPVKHALDGAFAARLVRS 524
>gi|22331043|ref|NP_187924.2| ribosomal RNA small subunit methyltransferase B [Arabidopsis
thaliana]
gi|18176252|gb|AAL60011.1| putative sun protein fmu [Arabidopsis thaliana]
gi|21436219|gb|AAM51397.1| putative sun protein fmu [Arabidopsis thaliana]
gi|110740623|dbj|BAE98415.1| putative sun (fmu) protein [Arabidopsis thaliana]
gi|332641785|gb|AEE75306.1| ribosomal RNA small subunit methyltransferase B [Arabidopsis
thaliana]
Length = 523
Score = 805 bits (2079), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 395/526 (75%), Positives = 456/526 (86%), Gaps = 3/526 (0%)
Query: 3 MAQAVSLPRILVSTDASKALSKQAASTRKPRTSISTKKRAKVSPSRRTQNLNLEVSPHRA 62
MAQ +S R+ +S + KA T+K R S +R V+PSR++QNLNLEVSPHRA
Sbjct: 1 MAQLLSF-RVYLSAETQKASPGSFKRTQKTRKPFSPDRRGPVAPSRKSQNLNLEVSPHRA 59
Query: 63 VSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGT 122
VSAVRLMRI++GGAFADLLN+KGKGSG NEM YVERT+GFRT+DLDDRDLRLVTD+VGGT
Sbjct: 60 VSAVRLMRIEYGGAFADLLNEKGKGSGSNEMSYVERTIGFRTRDLDDRDLRLVTDVVGGT 119
Query: 123 IRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPPYAVVDENVRLAKVA 182
IRWRRYLDHLI LCH+E+TF +MEPLLLQILRIG YEI+K DMPPYAVVDENVRLAKVA
Sbjct: 120 IRWRRYLDHLIGSLCHNERTFRNMEPLLLQILRIGVYEIIKRDMPPYAVVDENVRLAKVA 179
Query: 183 LRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLG 242
LRPGAG+ VNGILRKLV LK+ ++LPLPK+EG+DRAQARALAT++SHPVWMVRRW KYLG
Sbjct: 180 LRPGAGDFVNGILRKLVSLKEKDALPLPKVEGDDRAQARALATLHSHPVWMVRRWVKYLG 239
Query: 243 QEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFIRVKTG 302
+EA KLM+WNN+DP FSLRAN+ + +TRADLV +LN LK VPHELSLHL+EF+R+KTG
Sbjct: 240 LDEATKLMIWNNNDPGFSLRANTGRDITRADLVERLNSLK--VPHELSLHLEEFVRIKTG 297
Query: 303 LQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGL 362
LQ V+QAGLLKEG+C+VQDESAGL+V+VV PQPG+ I+D CAAPGGKTL+MASCL GQG+
Sbjct: 298 LQTVVQAGLLKEGICSVQDESAGLIVSVVKPQPGERIMDACAAPGGKTLFMASCLKGQGM 357
Query: 363 VYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVL 422
+YA+D+N+GRLRIL ETAK HQV+ +I TIH+DLR FA+ + V+ DKVLLDAPCSGLGVL
Sbjct: 358 IYAMDVNEGRLRILGETAKSHQVDGLITTIHSDLRVFAETNEVQYDKVLLDAPCSGLGVL 417
Query: 423 SKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLL 482
SKRADLRWNR+LEDM EL LQDELLD+AS LVK GGVLVYSTCSIDPEENE RVEAFLL
Sbjct: 418 SKRADLRWNRKLEDMLELTKLQDELLDSASKLVKHGGVLVYSTCSIDPEENEGRVEAFLL 477
Query: 483 RHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARLVRAF 528
RHPEF+IDP VPS FVT GFF S+P+KHSLDGAFAARLVRA
Sbjct: 478 RHPEFTIDPVTSFVPSSFVTSQGFFLSNPVKHSLDGAFAARLVRAL 523
>gi|356501644|ref|XP_003519634.1| PREDICTED: ribosomal RNA small subunit methyltransferase B-like
[Glycine max]
Length = 528
Score = 803 bits (2074), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/499 (78%), Positives = 438/499 (87%), Gaps = 5/499 (1%)
Query: 30 RKPRTSISTKKRAKVSPSR--RTQNLNLEVSPHRAVSAVRLMRIQFGGAFADLLNKKGKG 87
R T+IS AK +R +TQ LN EVSPHRAVSAVRLMRI+ GGAFADLLN+KGKG
Sbjct: 31 RTCSTNISIPSTAKGGGNRLLKTQKLNSEVSPHRAVSAVRLMRIELGGAFADLLNEKGKG 90
Query: 88 SGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSME 147
SG+NEMGYV+RTLGFRT++L+ DLRLVTDIVGGTIRWRRYLDHLI LCHD K SSME
Sbjct: 91 SGENEMGYVQRTLGFRTRELNHHDLRLVTDIVGGTIRWRRYLDHLISSLCHD-KDISSME 149
Query: 148 PLLLQILRIGFYEIVKLDMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSL 207
PLLLQILRIGFYEIVKLDMPPYAVVDENV+LAK ALRPGAGN+VNGILRKLV+LK+ SL
Sbjct: 150 PLLLQILRIGFYEIVKLDMPPYAVVDENVKLAKFALRPGAGNMVNGILRKLVVLKEKESL 209
Query: 208 PLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRK 267
PLPK+EG+DRAQARALAT+YSHPVWMVRRWTKYLGQEEAIKLM+WNNS+PSFSLRAN +
Sbjct: 210 PLPKVEGDDRAQARALATLYSHPVWMVRRWTKYLGQEEAIKLMIWNNSEPSFSLRANRAR 269
Query: 268 GVTRADLVMQLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLV 327
G +R DLV QLN LK VPH+LS HLDEF+R+KTGLQ +IQAGLLK+GLC+VQDESAGLV
Sbjct: 270 GFSRDDLVTQLNALK--VPHKLSPHLDEFVRIKTGLQIIIQAGLLKKGLCSVQDESAGLV 327
Query: 328 VAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNS 387
V+VVDPQPG++I+DCCAAPGGKTLYMAS LSGQG V+AID+N GRLRIL ETAKLHQV+
Sbjct: 328 VSVVDPQPGETIIDCCAAPGGKTLYMASHLSGQGKVFAIDVNSGRLRILKETAKLHQVDG 387
Query: 388 VIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDEL 447
VI IHADLRT D+ +K +KVLLDAPCSGLGVLSKRADLRWN+ LEDME+LK LQDEL
Sbjct: 388 VITAIHADLRTLPDSGQLKSNKVLLDAPCSGLGVLSKRADLRWNKNLEDMEQLKELQDEL 447
Query: 448 LDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFF 507
LDAAS LVKPGGVLVYSTCSIDPEEN++RV AFL RH +F IDP D VP DF T GFF
Sbjct: 448 LDAASKLVKPGGVLVYSTCSIDPEENDDRVVAFLARHSDFHIDPVDRYVPPDFETSSGFF 507
Query: 508 FSDPIKHSLDGAFAARLVR 526
FS+P+KHSLDG+FAARLVR
Sbjct: 508 FSNPVKHSLDGSFAARLVR 526
>gi|10172606|dbj|BAB01410.1| unnamed protein product [Arabidopsis thaliana]
Length = 531
Score = 798 bits (2061), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 395/534 (73%), Positives = 456/534 (85%), Gaps = 11/534 (2%)
Query: 3 MAQAVSLPRILVSTDASKALSKQAASTRKPRTSISTKKRAKVSPSRRTQNLNLEVSPHRA 62
MAQ +S R+ +S + KA T+K R S +R V+PSR++QNLNLEVSPHRA
Sbjct: 1 MAQLLSF-RVYLSAETQKASPGSFKRTQKTRKPFSPDRRGPVAPSRKSQNLNLEVSPHRA 59
Query: 63 V--------SAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRL 114
V SAVRLMRI++GGAFADLLN+KGKGSG NEM YVERT+GFRT+DLDDRDLRL
Sbjct: 60 VFVCGAYTVSAVRLMRIEYGGAFADLLNEKGKGSGSNEMSYVERTIGFRTRDLDDRDLRL 119
Query: 115 VTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPPYAVVDE 174
VTD+VGGTIRWRRYLDHLI LCH+E+TF +MEPLLLQILRIG YEI+K DMPPYAVVDE
Sbjct: 120 VTDVVGGTIRWRRYLDHLIGSLCHNERTFRNMEPLLLQILRIGVYEIIKRDMPPYAVVDE 179
Query: 175 NVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMV 234
NVRLAKVALRPGAG+ VNGILRKLV LK+ ++LPLPK+EG+DRAQARALAT++SHPVWMV
Sbjct: 180 NVRLAKVALRPGAGDFVNGILRKLVSLKEKDALPLPKVEGDDRAQARALATLHSHPVWMV 239
Query: 235 RRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLD 294
RRW KYLG +EA KLM+WNN+DP FSLRAN+ + +TRADLV +LN LK VPHELSLHL+
Sbjct: 240 RRWVKYLGLDEATKLMIWNNNDPGFSLRANTGRDITRADLVERLNSLK--VPHELSLHLE 297
Query: 295 EFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMA 354
EF+R+KTGLQ V+QAGLLKEG+C+VQDESAGL+V+VV PQPG+ I+D CAAPGGKTL+MA
Sbjct: 298 EFVRIKTGLQTVVQAGLLKEGICSVQDESAGLIVSVVKPQPGERIMDACAAPGGKTLFMA 357
Query: 355 SCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDA 414
SCL GQG++YA+D+N+GRLRIL ETAK HQV+ +I TIH+DLR FA+ + V+ DKVLLDA
Sbjct: 358 SCLKGQGMIYAMDVNEGRLRILGETAKSHQVDGLITTIHSDLRVFAETNEVQYDKVLLDA 417
Query: 415 PCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENE 474
PCSGLGVLSKRADLRWNR+LEDM EL LQDELLD+AS LVK GGVLVYSTCSIDPEENE
Sbjct: 418 PCSGLGVLSKRADLRWNRKLEDMLELTKLQDELLDSASKLVKHGGVLVYSTCSIDPEENE 477
Query: 475 ERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARLVRAF 528
RVEAFLLRHPEF+IDP VPS FVT GFF S+P+KHSLDGAFAARLVRA
Sbjct: 478 GRVEAFLLRHPEFTIDPVTSFVPSSFVTSQGFFLSNPVKHSLDGAFAARLVRAL 531
>gi|357495101|ref|XP_003617839.1| Ribosomal RNA small subunit methyltransferase [Medicago truncatula]
gi|355519174|gb|AET00798.1| Ribosomal RNA small subunit methyltransferase [Medicago truncatula]
Length = 654
Score = 794 bits (2051), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/489 (76%), Positives = 434/489 (88%), Gaps = 3/489 (0%)
Query: 36 ISTKKRAKVSPSRRTQNLNLEVSPHRAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGY 95
+S+ + S + Q LN ++SPHRAVSAVRLMRI+ GGAFADLLN+KGKGSG+NEMGY
Sbjct: 40 LSSTNNGSANRSVKPQKLNSDISPHRAVSAVRLMRIELGGAFADLLNEKGKGSGENEMGY 99
Query: 96 VERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILR 155
V+RTLGFRT++L+++DLRLVT+IVGGTIRWRRYLDHLI LCHD K SSMEPLLLQILR
Sbjct: 100 VQRTLGFRTRELNNQDLRLVTEIVGGTIRWRRYLDHLISSLCHD-KDISSMEPLLLQILR 158
Query: 156 IGFYEIVKLDMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGN 215
IGFYEIVKLDMPPYAVVDENV+LAK ALRPGAGN+VNG+LRKLV+LK+N +LPLPK+EG+
Sbjct: 159 IGFYEIVKLDMPPYAVVDENVQLAKAALRPGAGNMVNGVLRKLVVLKENETLPLPKVEGD 218
Query: 216 DRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLV 275
DR+QARALAT+YSHPVW+VRRWTKYLGQEEAIKLM+WNN +PS+SLRAN KG +R DLV
Sbjct: 219 DRSQARALATLYSHPVWIVRRWTKYLGQEEAIKLMIWNNIEPSYSLRANRAKGFSRDDLV 278
Query: 276 MQLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQP 335
+LN LK VPH+LSLHLD+F+R+KTGLQ +I AGL KEGLC+VQDESAGL+V++VDPQP
Sbjct: 279 TELNALK--VPHKLSLHLDDFVRIKTGLQIIIHAGLFKEGLCSVQDESAGLIVSIVDPQP 336
Query: 336 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHAD 395
G++IVDCCAAPGGKTLYMA+ LSGQG+VYA+D+N GRLRIL ETAKLHQV+ V+ T+HAD
Sbjct: 337 GETIVDCCAAPGGKTLYMAAHLSGQGMVYAVDVNSGRLRILKETAKLHQVDGVVTTVHAD 396
Query: 396 LRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLV 455
LRT D +K +KVLLDAPCSGLGVLSKRADLRWNR+LEDME+LK LQDELLDAAS LV
Sbjct: 397 LRTLTDGEPLKSNKVLLDAPCSGLGVLSKRADLRWNRKLEDMEQLKKLQDELLDAASTLV 456
Query: 456 KPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHS 515
KPGGVLVYSTCSIDPEEN++RV AFL RH +F IDP D VP DFVT GF+ S+P+KHS
Sbjct: 457 KPGGVLVYSTCSIDPEENDDRVAAFLERHADFHIDPVDRYVPPDFVTPKGFYSSNPVKHS 516
Query: 516 LDGAFAARL 524
LDG+FAARL
Sbjct: 517 LDGSFAARL 525
>gi|297834138|ref|XP_002884951.1| NOL1/NOP2/sun family protein [Arabidopsis lyrata subsp. lyrata]
gi|297330791|gb|EFH61210.1| NOL1/NOP2/sun family protein [Arabidopsis lyrata subsp. lyrata]
Length = 525
Score = 786 bits (2029), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 390/528 (73%), Positives = 448/528 (84%), Gaps = 5/528 (0%)
Query: 3 MAQAVSLPRILVSTDASKALSKQAASTRKPRTSISTKKRAKVSPSRRTQNLNLEVSPHRA 62
MAQ +S R+ +S + KA T K R S +R +PSR+ QNLNLEVSPHRA
Sbjct: 1 MAQLLSF-RVYLSAETQKASPGSFKRTPKTRKPFSQDRRGPGAPSRKPQNLNLEVSPHRA 59
Query: 63 VSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVT--DIVG 120
VSAVRLMRI++GGAFADLLN+KGKGSG NEM YVERT+GFRT+DLDDRDLRLV+ D+VG
Sbjct: 60 VSAVRLMRIEYGGAFADLLNEKGKGSGSNEMSYVERTIGFRTRDLDDRDLRLVSVADVVG 119
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPPYAVVDENVRLAK 180
GTIRWRRYLDHLI LCH+E+TF +MEPLLLQILRIG YEI+K DMPPYAVVDENVRLAK
Sbjct: 120 GTIRWRRYLDHLIGSLCHNERTFRNMEPLLLQILRIGVYEIIKRDMPPYAVVDENVRLAK 179
Query: 181 VALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKY 240
VALRPGAG+ VNGILRKLV LK+ ++LPLPK+EG+DRAQARALAT++SHPVWMVRRW KY
Sbjct: 180 VALRPGAGDFVNGILRKLVSLKEKDALPLPKVEGDDRAQARALATLHSHPVWMVRRWVKY 239
Query: 241 LGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFIRVK 300
LG EEA LM WNN+DP FSLRAN+ +G+ R+DLV +LN LK VPHELSLHL+EF+R+K
Sbjct: 240 LGLEEATTLMTWNNNDPGFSLRANTGRGIARSDLVERLNSLK--VPHELSLHLEEFVRIK 297
Query: 301 TGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQ 360
TGLQ V+QAGLLKEG+C+VQDESAGL+V+VV PQPG+ I+D CAAPGGKTL+MASCL GQ
Sbjct: 298 TGLQTVVQAGLLKEGICSVQDESAGLIVSVVKPQPGERIMDACAAPGGKTLFMASCLKGQ 357
Query: 361 GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLG 420
G++YA+D+N+GRLRIL ETAK HQV+ +I TIH+DLR FA S V+ DKVLLDAPCSGLG
Sbjct: 358 GMIYAMDVNEGRLRILGETAKSHQVDGLITTIHSDLRVFAVTSEVQYDKVLLDAPCSGLG 417
Query: 421 VLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAF 480
VLSKRADLRWNR+LEDM EL LQD+LLD+AS LVK GGVL+YSTCSIDPEENE RVEAF
Sbjct: 418 VLSKRADLRWNRKLEDMVELTELQDDLLDSASKLVKHGGVLIYSTCSIDPEENEGRVEAF 477
Query: 481 LLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARLVRAF 528
L RHP FSIDP VPS FVT GFF S+P+KHSLDGAFAARLVRA
Sbjct: 478 LERHPVFSIDPVTSFVPSSFVTSQGFFLSNPVKHSLDGAFAARLVRAL 525
>gi|115479747|ref|NP_001063467.1| Os09g0477900 [Oryza sativa Japonica Group]
gi|52077347|dbj|BAD46388.1| sunL protein-like [Oryza sativa Japonica Group]
gi|113631700|dbj|BAF25381.1| Os09g0477900 [Oryza sativa Japonica Group]
gi|222641777|gb|EEE69909.1| hypothetical protein OsJ_29754 [Oryza sativa Japonica Group]
Length = 570
Score = 715 bits (1846), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/515 (67%), Positives = 424/515 (82%), Gaps = 13/515 (2%)
Query: 17 DASKALSKQAASTRKPRTS--ISTKK--RAKVSPSRRTQNLNLEVSPHRAVSAVRLMRIQ 72
D+ +A +++ TR P S + T++ R KVS N+NLEVS HRAV+AVRL+RI+
Sbjct: 63 DSPEAPPRRSGITRVPNRSPEMPTERAGRTKVS------NVNLEVSHHRAVAAVRLLRIE 116
Query: 73 FGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHL 132
G AF DLLN+KG SG+NEM YVERTLGF + LD+RD+RLVT IV GT+RW+RYLD+L
Sbjct: 117 KGKAFVDLLNEKGNSSGENEMSYVERTLGFSIRCLDNRDIRLVTVIVAGTVRWKRYLDYL 176
Query: 133 ICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPPYAVVDENVRLAKVALRPGAGNLVN 192
I LC +EK F MEPLLLQILRIGF+EI+KL++P YA VDENVRLAKVALRPGAGNLVN
Sbjct: 177 IMSLCSEEKVFREMEPLLLQILRIGFFEILKLNVPAYAAVDENVRLAKVALRPGAGNLVN 236
Query: 193 GILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVW 252
ILRKL+LLK+ NSLPLPK+EG+DRAQARAL+ IYSHPVWMVRRW ++LG+EEA+KLM W
Sbjct: 237 AILRKLLLLKEANSLPLPKIEGDDRAQARALSIIYSHPVWMVRRWIRFLGKEEALKLMKW 296
Query: 253 NNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLL 312
NNSDP FS+R N+ G TRADL+ +L LQV +E S +DEF+R++ G+Q V+QAGLL
Sbjct: 297 NNSDPHFSIRVNTANGYTRADLIDRLE--SLQVHYEKST-MDEFVRIQEGMQTVLQAGLL 353
Query: 313 KEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGR 372
KEG+CAVQDESAGLVV+VVDPQPG++I+DCCAAPGGKTL+MA+ LSGQG ++A+DINKGR
Sbjct: 354 KEGMCAVQDESAGLVVSVVDPQPGETIIDCCAAPGGKTLFMAARLSGQGKIWALDINKGR 413
Query: 373 LRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNR 432
LRIL E AKLH ++++I IHADLR +A +T DKVLLDAPCSGLGVLSKRADLRWNR
Sbjct: 414 LRILMEAAKLHNLDAMISDIHADLRLYAKETTATFDKVLLDAPCSGLGVLSKRADLRWNR 473
Query: 433 RLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPA 492
+ ED+EEL LQDELLD+AS+LVKPGG+LVYSTCSIDPEENE R+ AF+ RHP+F +
Sbjct: 474 QFEDLEELMCLQDELLDSASMLVKPGGILVYSTCSIDPEENEHRIAAFVQRHPDFVLQSV 533
Query: 493 DGLVPSDFVTKHGFFFSDPIKHSLDGAFAARLVRA 527
G VP++FVT GF+ S P KHS+DGAFAARLVR+
Sbjct: 534 HGYVPAEFVTDEGFYSSSPTKHSIDGAFAARLVRS 568
>gi|218202330|gb|EEC84757.1| hypothetical protein OsI_31764 [Oryza sativa Indica Group]
Length = 570
Score = 715 bits (1845), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/515 (67%), Positives = 424/515 (82%), Gaps = 13/515 (2%)
Query: 17 DASKALSKQAASTRKPRTS--ISTKK--RAKVSPSRRTQNLNLEVSPHRAVSAVRLMRIQ 72
D+ +A +++ TR P S + T++ R KVS N+NLEVS HRAV+AVRL+RI+
Sbjct: 63 DSPEAPPRRSGITRVPNHSPEMPTERAGRTKVS------NVNLEVSHHRAVAAVRLLRIE 116
Query: 73 FGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHL 132
G AF DLLN+KG SG+NEM YVERTLGF + LD+RD+RLVT IV GT+RW+RYLD+L
Sbjct: 117 KGKAFVDLLNEKGNSSGENEMSYVERTLGFSIRCLDNRDIRLVTVIVAGTVRWKRYLDYL 176
Query: 133 ICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPPYAVVDENVRLAKVALRPGAGNLVN 192
I LC +EK F MEPLLLQILRIGF+EI+KL++P YA VDENVRLAKVALRPGAGNLVN
Sbjct: 177 IMSLCSEEKVFREMEPLLLQILRIGFFEILKLNVPAYAAVDENVRLAKVALRPGAGNLVN 236
Query: 193 GILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVW 252
ILRKL+LLK+ NSLPLPK+EG+DRAQARAL+ IYSHPVWMVRRW ++LG+EEA+KLM W
Sbjct: 237 AILRKLLLLKEANSLPLPKIEGDDRAQARALSIIYSHPVWMVRRWIRFLGKEEALKLMKW 296
Query: 253 NNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLL 312
NNSDP FS+R N+ G TRADL+ +L LQV +E S +DEF+R++ G+Q V+QAGLL
Sbjct: 297 NNSDPHFSIRVNTANGYTRADLIDRLE--SLQVHYEKST-MDEFVRIQEGMQTVLQAGLL 353
Query: 313 KEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGR 372
KEG+CAVQDESAGLVV+VVDPQPG++I+DCCAAPGGKTL+MA+ LSGQG ++A+DINKGR
Sbjct: 354 KEGMCAVQDESAGLVVSVVDPQPGETIIDCCAAPGGKTLFMAARLSGQGKIWALDINKGR 413
Query: 373 LRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNR 432
LRIL E AKLH ++++I IHADLR +A +T DKVLLDAPCSGLGVLSKRADLRWNR
Sbjct: 414 LRILMEAAKLHNLDAMISDIHADLRLYAKETTATFDKVLLDAPCSGLGVLSKRADLRWNR 473
Query: 433 RLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPA 492
+ ED+EEL LQDELLD+AS+LVKPGG+LVYSTCSIDPEENE R+ AF+ RHP+F +
Sbjct: 474 QFEDLEELMCLQDELLDSASMLVKPGGILVYSTCSIDPEENEHRIAAFVQRHPDFVLQSV 533
Query: 493 DGLVPSDFVTKHGFFFSDPIKHSLDGAFAARLVRA 527
G VP++FVT GF+ S P KHS+DGAFAARLVR+
Sbjct: 534 HGYVPAEFVTDEGFYSSSPTKHSIDGAFAARLVRS 568
>gi|326487822|dbj|BAK05583.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 546
Score = 711 bits (1835), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/530 (66%), Positives = 423/530 (79%), Gaps = 16/530 (3%)
Query: 12 ILVSTDASKALSKQAASTR--------KPRTSISTKKRAKVSPSRRTQN-----LNLEVS 58
+L+S DAS A ++ ++R + + K+ +P RRT +N EVS
Sbjct: 19 LLLSADASSAAPGRSRASRYDAGAPPSRAGRGGAWKRDDPEAPPRRTGTSKVPIVNFEVS 78
Query: 59 PHRAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDI 118
HRAV+AVRL+R G AF DLLN+K SG+NEMGYVERTLGF T+ LDDRD+RLVT I
Sbjct: 79 HHRAVAAVRLLRADKGKAFVDLLNEKANDSGENEMGYVERTLGFSTRHLDDRDIRLVTVI 138
Query: 119 VGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPPYAVVDENVRL 178
V GT+RW+RY+D+LI LC +EK FS+MEPLLLQILRIGFYEI+KL++P YAVVDENVRL
Sbjct: 139 VAGTVRWKRYIDYLIMSLCSEEKVFSNMEPLLLQILRIGFYEILKLNVPAYAVVDENVRL 198
Query: 179 AKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWT 238
AKVALRPGAGN+VN ILRKL+LLK+ +SLPLPK+EG+DRAQARAL+ IYSHPVWMVRRW
Sbjct: 199 AKVALRPGAGNMVNAILRKLLLLKETDSLPLPKIEGDDRAQARALSIIYSHPVWMVRRWI 258
Query: 239 KYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFIR 298
++LG+EEA+KLM WNNSDP FSLR N+ G TR DLV +L LQV +E S+ +DEF+R
Sbjct: 259 RFLGKEEALKLMNWNNSDPYFSLRVNTTNGYTRDDLVTRLE--DLQVHYEKSI-MDEFVR 315
Query: 299 VKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLS 358
++ G+Q V+QAGLLKEG+CAVQDESAG VV+VVDPQPG++I+DCCAAPGGKTL+MAS L+
Sbjct: 316 IREGMQAVLQAGLLKEGMCAVQDESAGFVVSVVDPQPGETIMDCCAAPGGKTLFMASRLA 375
Query: 359 GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSG 418
GQG V A+DINKGRLRIL E AK H ++ +I IH DLR +A ST K DKVLLDAPCSG
Sbjct: 376 GQGKVSALDINKGRLRILMEAAKCHNLDDIITDIHGDLRLYAKESTTKYDKVLLDAPCSG 435
Query: 419 LGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVE 478
LGVLSKRADLRWNR+LED+EEL LQDELLD+ASLLVKPGGVL+YSTCSID EENE RV
Sbjct: 436 LGVLSKRADLRWNRQLEDLEELVCLQDELLDSASLLVKPGGVLIYSTCSIDHEENENRVT 495
Query: 479 AFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARLVRAF 528
F+ RHPEF++ G VP++F+T GF+ S P KHSLDGAFAARLVR+
Sbjct: 496 DFVQRHPEFTLQGVHGYVPAEFITGDGFYSSSPTKHSLDGAFAARLVRSM 545
>gi|357154032|ref|XP_003576647.1| PREDICTED: ribosomal RNA small subunit methyltransferase B-like
[Brachypodium distachyon]
Length = 569
Score = 708 bits (1828), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/512 (68%), Positives = 416/512 (81%), Gaps = 17/512 (3%)
Query: 31 KPRTSISTKKRA------KVSPSRRTQN--------LNLEVSPHRAVSAVRLMRIQFGGA 76
KP S+ +RA K++P+ T+ +N EVS HRAV+AVRL+R + G A
Sbjct: 60 KPDNPDSSPRRAGISGVPKLNPNVSTKRAGMSKVPIINFEVSHHRAVAAVRLLRAEKGKA 119
Query: 77 FADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLL 136
F DLLN+KG SG+NEMGYVERTLGF T+ LDDRD+RLVT IV GT+RW+RYLD+LI L
Sbjct: 120 FVDLLNEKGNDSGENEMGYVERTLGFSTRHLDDRDIRLVTVIVAGTVRWKRYLDYLIMSL 179
Query: 137 CHDEKTFSSMEPLLLQILRIGFYEIVKLDMPPYAVVDENVRLAKVALRPGAGNLVNGILR 196
C +EK FS MEPLLLQILRIGF+EI+KL++P YAVVDENVRLAKVALRPGAGN+VN ILR
Sbjct: 180 CSEEKVFSDMEPLLLQILRIGFFEILKLNVPAYAVVDENVRLAKVALRPGAGNMVNAILR 239
Query: 197 KLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSD 256
KL+LLK+ +SLPLPK+EG+DRAQARAL+ IYSHPVWMVRRW + LG++EA+KLM WNNSD
Sbjct: 240 KLLLLKETDSLPLPKIEGDDRAQARALSIIYSHPVWMVRRWIRVLGKDEALKLMNWNNSD 299
Query: 257 PSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGL 316
P FSLR N+ G RADLV +L LQV +E+S+ +DEF+R++ G+Q V+QAGLLK+G+
Sbjct: 300 PYFSLRVNTASGYIRADLVERLE--DLQVHYEISI-MDEFVRIREGMQAVLQAGLLKDGM 356
Query: 317 CAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRIL 376
CAVQDESAGLVV+VVDPQPG++I+DCCAAPGGKTL+MAS LSGQG ++A+DINKGRLRIL
Sbjct: 357 CAVQDESAGLVVSVVDPQPGETIIDCCAAPGGKTLFMASRLSGQGKIWALDINKGRLRIL 416
Query: 377 NETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLED 436
E AK H ++ +I IH DLR A STVK DKVLLDAPCSGLGVLSKRADLRWNR+ ED
Sbjct: 417 MEAAKSHNLDHMITDIHGDLRLHAKESTVKYDKVLLDAPCSGLGVLSKRADLRWNRQFED 476
Query: 437 MEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLV 496
+EEL LQDELLD+AS LVKPGGVL+YSTCSIDPEENE RV +F+ RHPEF G V
Sbjct: 477 LEELMCLQDELLDSASSLVKPGGVLIYSTCSIDPEENENRVTSFVQRHPEFIPQGVHGYV 536
Query: 497 PSDFVTKHGFFFSDPIKHSLDGAFAARLVRAF 528
P+ FVT GF+ S+P KHSLDGAFAARLVR+
Sbjct: 537 PAQFVTDEGFYSSNPTKHSLDGAFAARLVRSM 568
>gi|226509581|ref|NP_001146662.1| uncharacterized protein LOC100280262 [Zea mays]
gi|219888225|gb|ACL54487.1| unknown [Zea mays]
Length = 555
Score = 706 bits (1822), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/494 (68%), Positives = 418/494 (84%), Gaps = 7/494 (1%)
Query: 34 TSISTKKRAKVSPSRRTQNLNLEVSPHRAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEM 93
+++STKK A +S + +NL+VS HRAV+ VRL+RI+ G AF DLLN+K SGD E+
Sbjct: 67 SAVSTKK-AGMS---KDTFINLDVSHHRAVAVVRLLRIEKGKAFVDLLNEKANDSGDKEI 122
Query: 94 GYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQI 153
GYV+RTLGF T+ L+DRD+RLVT IV GT+RW+RYLD+LI LC +EK F MEPLLLQI
Sbjct: 123 GYVQRTLGFSTRYLEDRDIRLVTVIVAGTVRWKRYLDYLIMSLCSEEKVFREMEPLLLQI 182
Query: 154 LRIGFYEIVKLDMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLE 213
LRIGF+EI+KLD+P YA VDENVRLAKVALRPGAGN+VN ILRKLVLLK+ +SLPLPK+E
Sbjct: 183 LRIGFFEILKLDVPAYAAVDENVRLAKVALRPGAGNMVNAILRKLVLLKETDSLPLPKIE 242
Query: 214 GNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRAD 273
G+DRAQARAL+ IYSHPVWMVRRW ++ G++EA++LM WNNSDP FSLR N+ KG TRAD
Sbjct: 243 GDDRAQARALSIIYSHPVWMVRRWIRFHGKDEALRLMNWNNSDPHFSLRVNTSKGYTRAD 302
Query: 274 LVMQLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDP 333
LV +L LQV +E S+ +DEF+R++ G+Q V++AGLLK+G+CAVQDESAGLVV+VVDP
Sbjct: 303 LVKRLE--SLQVHYEESI-MDEFVRIREGMQQVLKAGLLKDGICAVQDESAGLVVSVVDP 359
Query: 334 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIH 393
QPG++IVDCCAAPGGKTL+MAS LSG+G ++A+DINKGRLRIL + AKLH ++ +I IH
Sbjct: 360 QPGETIVDCCAAPGGKTLFMASRLSGEGKIWALDINKGRLRILMDAAKLHGLDDMITDIH 419
Query: 394 ADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASL 453
ADLR +A +TVK DKVLLDAPCSGLGVLSKRADLRWNR+ E++EEL LQDELLD+AS+
Sbjct: 420 ADLRLYAKETTVKYDKVLLDAPCSGLGVLSKRADLRWNRQFENLEELMCLQDELLDSASM 479
Query: 454 LVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIK 513
LVKPGG+L+YSTCSIDPEENEER+ AF+ RHPEF++ G VP +F+T GF+ S+P K
Sbjct: 480 LVKPGGILIYSTCSIDPEENEERITAFVQRHPEFALQSVCGYVPREFITDEGFYSSNPTK 539
Query: 514 HSLDGAFAARLVRA 527
HS+DGAFAARLVR+
Sbjct: 540 HSMDGAFAARLVRS 553
>gi|242045062|ref|XP_002460402.1| hypothetical protein SORBIDRAFT_02g027560 [Sorghum bicolor]
gi|241923779|gb|EER96923.1| hypothetical protein SORBIDRAFT_02g027560 [Sorghum bicolor]
Length = 574
Score = 704 bits (1818), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 341/501 (68%), Positives = 418/501 (83%), Gaps = 9/501 (1%)
Query: 29 TRKPR--TSISTKKRAKVSPSRRTQNLNLEVSPHRAVSAVRLMRIQFGGAFADLLNKKGK 86
TR P T++STK RA +S + +NL+VS HRAV+ VRL+RI+ G AF DLLN+K
Sbjct: 79 TRVPNLGTAVSTK-RAGMS---KDTVINLDVSHHRAVAVVRLLRIEKGKAFVDLLNEKAN 134
Query: 87 GSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSM 146
SG+ E+GYVERTLGF T+ LDDRD+RLVT IV GT+RW+RYLD+LI LC +EK F M
Sbjct: 135 DSGEKEIGYVERTLGFSTRYLDDRDIRLVTVIVAGTVRWKRYLDYLIMSLCSEEKVFREM 194
Query: 147 EPLLLQILRIGFYEIVKLDMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNS 206
EPLLLQILRIGF+EI+KLD+P YA VDENV+LAKVALRPGAGN+VN ILRKLVLLK+ +S
Sbjct: 195 EPLLLQILRIGFFEILKLDVPAYAAVDENVKLAKVALRPGAGNMVNAILRKLVLLKETDS 254
Query: 207 LPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSR 266
LPLPK+EG+DRAQARAL+ IYSHPVWMVRRW ++ G++EA++LM WNNSDP FSLR N+
Sbjct: 255 LPLPKIEGDDRAQARALSIIYSHPVWMVRRWIRFHGKDEALRLMNWNNSDPHFSLRVNTS 314
Query: 267 KGVTRADLVMQLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGL 326
KG TRADLV +L LQV +E S+ +D F+R++ G+Q V+QAGLLK+G+CAVQDESAGL
Sbjct: 315 KGYTRADLVKRLE--SLQVHYEESV-MDGFVRIQEGMQAVLQAGLLKDGICAVQDESAGL 371
Query: 327 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVN 386
VV+VVDPQPG++IVDCCAAPGGKTL+MAS LSG+G + A+DINKGRLRIL + AKLH ++
Sbjct: 372 VVSVVDPQPGETIVDCCAAPGGKTLFMASRLSGEGKIQALDINKGRLRILMDAAKLHGLD 431
Query: 387 SVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDE 446
+I IHADLR +A +T K DKVLLDAPCSGLGVLSKRADLRWNR+ ED+EEL LQDE
Sbjct: 432 DIITDIHADLRLYAKETTAKYDKVLLDAPCSGLGVLSKRADLRWNRQFEDLEELICLQDE 491
Query: 447 LLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGF 506
LLD+AS+LV+PGG+L+YSTCSIDPEENE+R+ AF+ RHPEF+ G VP++F+T GF
Sbjct: 492 LLDSASMLVRPGGILIYSTCSIDPEENEKRIAAFVQRHPEFAPQSVCGYVPTEFITDEGF 551
Query: 507 FFSDPIKHSLDGAFAARLVRA 527
+ S+P KHS+DGAFAARLVR+
Sbjct: 552 YSSNPTKHSMDGAFAARLVRS 572
>gi|414589762|tpg|DAA40333.1| TPA: hypothetical protein ZEAMMB73_282995 [Zea mays]
Length = 533
Score = 650 bits (1678), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 315/473 (66%), Positives = 386/473 (81%), Gaps = 10/473 (2%)
Query: 62 AVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGG 121
AV+ VRL+RI+ G AF DLLN+K SGD E+GYV+RTLGF T+ L+DRD+RLVT IV G
Sbjct: 62 AVAVVRLLRIEKGKAFVDLLNEKANDSGDKEIGYVQRTLGFSTRYLEDRDIRLVTVIVAG 121
Query: 122 TIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPPYAVVDENVRLAKV 181
T+RW+RYLD+LI LC +EK F MEPLLLQILRIGF+EI+KLD+P YA VDENVRLAKV
Sbjct: 122 TVRWKRYLDYLIMSLCSEEKVFREMEPLLLQILRIGFFEILKLDVPAYAAVDENVRLAKV 181
Query: 182 ALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYL 241
ALRPGAGN+VN ILRKLVLLK+ +SLPLPK+EG+DRAQARAL+ IYSHPVWMVRRW ++
Sbjct: 182 ALRPGAGNMVNAILRKLVLLKETDSLPLPKIEGDDRAQARALSIIYSHPVWMVRRWIRFH 241
Query: 242 GQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFIRVKT 301
G++EA++LM WNNSDP FSLR N+ KG TRADLV +L LQV +E S+ +DEF+R++
Sbjct: 242 GKDEALRLMNWNNSDPHFSLRVNTSKGYTRADLVKRLE--SLQVHYEESI-MDEFVRIRE 298
Query: 302 GLQNVIQAGLLKEG--LCAVQDE-----SAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMA 354
G+Q + +G L D + GLVV+VVDPQPG++IVDCCAAPGGKTL+MA
Sbjct: 299 GMQISSNKIVKMDGSMLLIALDVILTVITVGLVVSVVDPQPGETIVDCCAAPGGKTLFMA 358
Query: 355 SCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDA 414
S LSG+G ++A+DINKGRLRIL + AKLH ++ +I IHADLR +A +TVK DKVLLDA
Sbjct: 359 SRLSGEGKIWALDINKGRLRILMDAAKLHGLDDMITDIHADLRLYAKETTVKYDKVLLDA 418
Query: 415 PCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENE 474
PCSGLGVLSKRADLRWNR+ E++EEL LQDELLD+AS+LVKPGG+L+YSTCSIDPEENE
Sbjct: 419 PCSGLGVLSKRADLRWNRQFENLEELMCLQDELLDSASMLVKPGGILIYSTCSIDPEENE 478
Query: 475 ERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARLVRA 527
ER+ AF+ RHPEF++ G VP +F+T GF+ S+P KHS+DGAFAARLVR+
Sbjct: 479 ERITAFVQRHPEFALQSVCGYVPREFITDEGFYSSNPTKHSMDGAFAARLVRS 531
>gi|148906361|gb|ABR16335.1| unknown [Picea sitchensis]
Length = 558
Score = 621 bits (1602), Expect = e-175, Method: Compositional matrix adjust.
Identities = 315/495 (63%), Positives = 389/495 (78%), Gaps = 4/495 (0%)
Query: 33 RTSISTKKRAKVSPSRRTQNLNLEVSPHRAVSAVRLMRIQFGGAFADLLNKKGKGSG-DN 91
R + KKR P +++ +N VSPHRA SAVRL+RI+ GGAFADLLN + S D+
Sbjct: 64 RNNSQGKKRNPAKPVDKSK-INSNVSPHRAASAVRLLRIEQGGAFADLLNADYRESAIDD 122
Query: 92 EMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLL 151
EM Y++RTLGFRT LD R+ RLVTDIV G +RW+RYLD+LI L K MEPLL
Sbjct: 123 EMDYIQRTLGFRTNPLDARNTRLVTDIVAGVVRWKRYLDYLIFSLYDGAKNVKDMEPLLQ 182
Query: 152 QILRIGFYEIVKLDMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPK 211
QILRIG YEIVKL MPPYAVV+ENV LA+ ALR GAGN+VNGILR++ ++ + LPLPK
Sbjct: 183 QILRIGVYEIVKLGMPPYAVVNENVTLARAALRAGAGNMVNGILRRVASDREKDMLPLPK 242
Query: 212 LEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTR 271
+EG+DR++ARAL+ YSHPVWM+RRW YLGQE AI+LM WNNS PSFSLRANS +GV+R
Sbjct: 243 VEGDDRSKARALSVKYSHPVWMIRRWMTYLGQEGAIQLMEWNNSPPSFSLRANSGRGVSR 302
Query: 272 ADLVMQLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVV 331
DLV+ L L +Q HELS H+ EF+R+ TGLQ+VIQAGLLKEG+CAVQDE AGLVV+VV
Sbjct: 303 DDLVLLLKKLNVQ--HELSPHMTEFVRLSTGLQSVIQAGLLKEGMCAVQDEGAGLVVSVV 360
Query: 332 DPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRT 391
DPQPG++I+DCCAAPGGK L+MAS L GQG V AID+N+GRLR+L E AK+ + V+
Sbjct: 361 DPQPGETIIDCCAAPGGKALFMASRLQGQGSVIAIDVNQGRLRVLEEAAKVQALEGVVNA 420
Query: 392 IHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAA 451
D+R+FA ++++ DKVLLDAPCSGLGVL K+ D+RW R L+D+E+L +LQDELLDAA
Sbjct: 421 CQDDIRSFAVGASIRADKVLLDAPCSGLGVLCKKPDMRWKRTLKDLEQLILLQDELLDAA 480
Query: 452 SLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDP 511
SLLVKPGG+LVYSTCS+DP EN+ERVE+FL RHPEF ++ VP++F+++ GF+ S P
Sbjct: 481 SLLVKPGGILVYSTCSVDPGENKERVESFLTRHPEFIVEAVHKYVPNEFISEEGFYTSHP 540
Query: 512 IKHSLDGAFAARLVR 526
KH LDGAFAARL R
Sbjct: 541 TKHFLDGAFAARLFR 555
>gi|116788313|gb|ABK24833.1| unknown [Picea sitchensis]
Length = 515
Score = 573 bits (1478), Expect = e-161, Method: Compositional matrix adjust.
Identities = 294/454 (64%), Positives = 360/454 (79%), Gaps = 4/454 (0%)
Query: 33 RTSISTKKRAKVSPSRRTQNLNLEVSPHRAVSAVRLMRIQFGGAFADLLNKKGKGSG-DN 91
R + KKR P +++ +N VSPHRA SAVRL+RI+ GGAFADLLN + S D+
Sbjct: 64 RNNSQGKKRNPAKPVDKSK-INSNVSPHRAASAVRLLRIEQGGAFADLLNADYRESAIDD 122
Query: 92 EMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLL 151
EM Y++RTLGFRT LD R+ RLVTDIV G +RW+RYLD+LI L K MEPLL
Sbjct: 123 EMDYIQRTLGFRTNPLDARNTRLVTDIVAGVVRWKRYLDYLIFSLYDGAKNVKDMEPLLQ 182
Query: 152 QILRIGFYEIVKLDMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPK 211
QILRIG YEIVKL MPPYAVV+ENV LA+ ALR GAGN+VNGILR++ ++ + LPLPK
Sbjct: 183 QILRIGVYEIVKLGMPPYAVVNENVTLARAALRAGAGNMVNGILRRVASDREKDMLPLPK 242
Query: 212 LEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTR 271
+EG+DR++ARAL+ YSHPVWM+RRW YLGQE AI+LM WNNS PSFSLRANS +GV+R
Sbjct: 243 VEGDDRSKARALSVKYSHPVWMIRRWMTYLGQEGAIQLMEWNNSPPSFSLRANSGRGVSR 302
Query: 272 ADLVMQLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVV 331
DLV+ L L +Q HELS H+ EF+R+ TGLQ+VIQAGLLKEG+CAVQDE AGLVV+VV
Sbjct: 303 DDLVLLLKKLNVQ--HELSPHMTEFVRLSTGLQSVIQAGLLKEGMCAVQDEGAGLVVSVV 360
Query: 332 DPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRT 391
DPQPG++I+DCCAAPGGK L+MAS L GQG V AID+N+GRLR+L E AK+ + V+
Sbjct: 361 DPQPGETIIDCCAAPGGKALFMASRLQGQGSVIAIDVNQGRLRVLEEAAKVQALEGVVNA 420
Query: 392 IHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAA 451
D+R+FA ++++ DKVLLDAPCSGLGVL K+ D+RW R L+D+E+L +LQDELLDAA
Sbjct: 421 CQDDIRSFAVGASIRADKVLLDAPCSGLGVLCKKPDMRWKRTLKDLEQLILLQDELLDAA 480
Query: 452 SLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHP 485
SLLVKPGG+LVYSTCS+DP EN+ERVE+FL RHP
Sbjct: 481 SLLVKPGGILVYSTCSVDPGENKERVESFLTRHP 514
>gi|168019738|ref|XP_001762401.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686479|gb|EDQ72868.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 465
Score = 538 bits (1387), Expect = e-150, Method: Compositional matrix adjust.
Identities = 264/461 (57%), Positives = 346/461 (75%), Gaps = 3/461 (0%)
Query: 69 MRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRY 128
MRI+ GGAFAD+L+ +G S ++EM YV RTLGFR LD R+ RLVTD V G +RW+RY
Sbjct: 1 MRIEEGGAFADVLSGEGDNSWEDEMAYVGRTLGFRVPSLDLRERRLVTDEVAGIVRWKRY 60
Query: 129 LDHLI-CLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPPYAVVDENVRLAKVALRPGA 187
LD LI D + + MEPLL QILR+G YE++KL+MPP+AV++E V+LAKVALR GA
Sbjct: 61 LDFLIFSFFKQDVRDYDRMEPLLRQILRVGLYELIKLEMPPHAVLNETVQLAKVALRAGA 120
Query: 188 GNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAI 247
GNLVNG+LR +V +D LP+P +EG+ R++ARALATI+SHPVWMVR W G++E +
Sbjct: 121 GNLVNGLLRDVVRHQDKGLLPVPAVEGDQRSRARALATIHSHPVWMVRLWFTQFGEDETV 180
Query: 248 KLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFIRVKTGLQNVI 307
+LM NN P FSLRANS +GV++ +L+ +L+ KL+V + S +L +F+R+ G+Q+V+
Sbjct: 181 RLMECNNQRPKFSLRANSARGVSKQELIAELD--KLEVSYSESPYLPDFVRLSAGMQDVL 238
Query: 308 QAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAID 367
++GLL+ G AVQDESAGLVV+V+D PG +I+DCCAAPGGK L +AS L+GQG V A+D
Sbjct: 239 RSGLLQNGCIAVQDESAGLVVSVIDAHPGDTIIDCCAAPGGKALNLASRLNGQGKVVAVD 298
Query: 368 INKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRAD 427
+N+GRLRIL+E A+ V V+ H DLR +A + D+VLLDAPCSGLGVLSKRAD
Sbjct: 299 VNEGRLRILSEAAEQQGVGDVVSPCHYDLRDYAAKAAGTADRVLLDAPCSGLGVLSKRAD 358
Query: 428 LRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEF 487
LRW R ED+++L LQD LLDAA+LLVKPGGVLVYSTCSI+ EN ER+ AFL R+ +F
Sbjct: 359 LRWRRSPEDVKQLTELQDSLLDAAALLVKPGGVLVYSTCSIETSENSERIAAFLSRNRDF 418
Query: 488 SIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARLVRAF 528
+ + VP+ V+K GFF S P +H +DGAFAAR+ R+F
Sbjct: 419 VSENVEPFVPASMVSKEGFFVSFPHRHGVDGAFAARMRRSF 459
>gi|302824271|ref|XP_002993780.1| hypothetical protein SELMODRAFT_137586 [Selaginella moellendorffii]
gi|300138376|gb|EFJ05146.1| hypothetical protein SELMODRAFT_137586 [Selaginella moellendorffii]
Length = 476
Score = 511 bits (1315), Expect = e-142, Method: Compositional matrix adjust.
Identities = 248/459 (54%), Positives = 333/459 (72%), Gaps = 3/459 (0%)
Query: 67 RLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWR 126
RLMRI+ GGAF+D+LN G+ D EM YV+RTLGF L +L+LVT+ V G +RW+
Sbjct: 16 RLMRIEMGGAFSDVLNGDGEDRLDKEMEYVKRTLGFSIPSLRPENLKLVTEEVAGIVRWK 75
Query: 127 RYLDHLIC-LLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPPYAVVDENVRLAKVALRP 185
+YLD++I + D+ F MEP+L Q+LR+G YE++KL++P YAVV+E V+LA A R
Sbjct: 76 KYLDYVISNVYDKDQNEFERMEPILKQVLRLGAYELLKLEVPAYAVVNEAVKLANAASRA 135
Query: 186 GAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEE 245
GAG L N +LR + K+ N+LP+P++ GN R+QARALATI+SHPVWMVRRWT G E+
Sbjct: 136 GAGKLANALLRAVASHKEKNTLPVPEVTGNLRSQARALATIHSHPVWMVRRWTDRYGTED 195
Query: 246 AIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFIRVKTGLQN 305
+KLM WNN+ P ++LRAN+ G +R DL+ QL KL+V + S L +F+RV +GLQ
Sbjct: 196 TLKLMEWNNTRPFYALRANNATGTSRDDLIEQLT--KLEVSYVKSPLLKDFVRVTSGLQE 253
Query: 306 VIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYA 365
V+++GL+++G C VQDES GLVV ++DPQPG ++DCCAAPGGK+LY+AS L G+G V A
Sbjct: 254 VLRSGLIQQGRCTVQDESGGLVVELLDPQPGDLVIDCCAAPGGKSLYIASRLKGKGKVIA 313
Query: 366 IDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKR 425
+DINK RL++L ++AK V+ + + D R T D+VLLDAPCSGLGVLSKR
Sbjct: 314 VDINKARLQLLKDSAKKAGVSEQVSVYNVDARDMIRGKTGLADRVLLDAPCSGLGVLSKR 373
Query: 426 ADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHP 485
ADLRW R LE EEL LQDELLD A +V+PGGVLVYSTCSI+P+EN +R+ +FL R+
Sbjct: 374 ADLRWRRTLESFEELTKLQDELLDGACKMVRPGGVLVYSTCSIEPDENIDRITSFLARNQ 433
Query: 486 EFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARL 524
F ++P + VP + V++ G F+S P H +DGAFAA+L
Sbjct: 434 NFILEPLEREVPREMVSREGCFYSLPYTHGIDGAFAAKL 472
>gi|302823170|ref|XP_002993239.1| hypothetical protein SELMODRAFT_136794 [Selaginella moellendorffii]
gi|300138909|gb|EFJ05660.1| hypothetical protein SELMODRAFT_136794 [Selaginella moellendorffii]
Length = 476
Score = 509 bits (1310), Expect = e-141, Method: Compositional matrix adjust.
Identities = 247/459 (53%), Positives = 333/459 (72%), Gaps = 3/459 (0%)
Query: 67 RLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWR 126
RLMRI+ GGAF+D+LN G+ D EM YV+RTLGF L +L+LVT+ V G +RW+
Sbjct: 16 RLMRIEMGGAFSDVLNGDGEDRLDKEMEYVKRTLGFSIPSLRPENLKLVTEEVAGIVRWK 75
Query: 127 RYLDHLIC-LLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPPYAVVDENVRLAKVALRP 185
+YLD++I + D+ F MEP+L Q+LR+G YE++KL++P YAVV+E V+LA A R
Sbjct: 76 KYLDYVISNVYDKDQNEFERMEPILKQVLRLGSYELLKLEVPAYAVVNEAVKLANAASRA 135
Query: 186 GAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEE 245
GAG L N +LR + K+ N+LP+P++ GN R+QARAL TI+SHPVWMVRRWT G E+
Sbjct: 136 GAGKLANALLRAVASHKEKNTLPVPEVIGNLRSQARALGTIHSHPVWMVRRWTDRYGTED 195
Query: 246 AIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFIRVKTGLQN 305
+KLM WNN+ P ++LRAN+ G +R DL+ QL KL+V + S L++F+RV +GLQ
Sbjct: 196 TLKLMEWNNTRPFYALRANNATGTSRDDLIEQLK--KLEVSYVKSPLLEDFVRVTSGLQE 253
Query: 306 VIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYA 365
V+++GL+++G C VQDES GLVV ++DPQPG ++DCCAAPGGK+LY+AS L G+G V A
Sbjct: 254 VLRSGLIQQGRCTVQDESGGLVVELLDPQPGDLVIDCCAAPGGKSLYIASRLKGKGKVIA 313
Query: 366 IDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKR 425
+DINK RL++L ++AK V+ + + D R T D+VLLDAPCSGLGVLSKR
Sbjct: 314 VDINKARLQLLKDSAKKAGVSEQVSVYNVDARDMIRGKTGLADRVLLDAPCSGLGVLSKR 373
Query: 426 ADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHP 485
ADLRW R LE EEL LQDELLD A +V+PGGVLVYSTCSI+P+EN +R+ +FL R+
Sbjct: 374 ADLRWRRTLESFEELTKLQDELLDGACKMVRPGGVLVYSTCSIEPDENIDRITSFLARNQ 433
Query: 486 EFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARL 524
F ++P + VP + V++ G F+S P H +DGAFAA+L
Sbjct: 434 NFILEPLEREVPREMVSREGCFYSLPYTHGIDGAFAAKL 472
>gi|147837899|emb|CAN67145.1| hypothetical protein VITISV_042360 [Vitis vinifera]
Length = 324
Score = 452 bits (1162), Expect = e-124, Method: Compositional matrix adjust.
Identities = 234/304 (76%), Positives = 261/304 (85%), Gaps = 5/304 (1%)
Query: 3 MAQAVSLPRILVSTDASKALSK--QAASTRKPRTSISTKKRAKVSPSRRTQNLNLEVSPH 60
MAQ +S + +DA + SK + A TR P T+I T+ + RT +NLE+SPH
Sbjct: 1 MAQVLSFGLRIRCSDARRTSSKPLKVAKTR-PNTAIPTRSTGTRRNANRTYGVNLEISPH 59
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVG 120
RAVSAVRLMRI+ GGAFADLLN++GKGSGDNEMGYVERTLGFRT+DLDDRDLRLVTDIVG
Sbjct: 60 RAVSAVRLMRIELGGAFADLLNERGKGSGDNEMGYVERTLGFRTRDLDDRDLRLVTDIVG 119
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPPYAVVDENVRLAK 180
G+IRWRRYLDHLI LCHD KTF SMEPLLLQILRIGFYEIV LDMPPYAVVDENVRLAK
Sbjct: 120 GSIRWRRYLDHLIVSLCHDSKTFRSMEPLLLQILRIGFYEIVNLDMPPYAVVDENVRLAK 179
Query: 181 VALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKY 240
VALRPGA N+VN ILRKLVLLK+ NSLPLPKLEG+DRAQARALAT+YSHPVWMVRRWTKY
Sbjct: 180 VALRPGAANMVNAILRKLVLLKEKNSLPLPKLEGDDRAQARALATLYSHPVWMVRRWTKY 239
Query: 241 LGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFIRVK 300
LGQEEAIKLM+WNNS+PSFSLRANS KG TRADLVM+L +LK VPHELS HLD F+R++
Sbjct: 240 LGQEEAIKLMMWNNSEPSFSLRANSGKGFTRADLVMRLKMLK--VPHELSPHLDNFVRIR 297
Query: 301 TGLQ 304
TG+Q
Sbjct: 298 TGMQ 301
>gi|384252464|gb|EIE25940.1| S-adenosyl-L-methionine-dependent methyltransferase [Coccomyxa
subellipsoidea C-169]
Length = 452
Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust.
Identities = 219/464 (47%), Positives = 299/464 (64%), Gaps = 20/464 (4%)
Query: 69 MRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRY 128
MRI GAF L+ GS + + + LD RD R VT++V G RWRR
Sbjct: 1 MRIDEEGAFVGLVG----GSPTRTQPHARKN--SPSAPLDSRDARFVTELVFGVTRWRRR 54
Query: 129 LDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPPYAVVDENVRLAKVALRPGAG 188
LD LI L T +++P LLQILR+G +E+++L P +A+ + +V LAK +RP A
Sbjct: 55 LDWLISQL---RPTGGALDPQLLQILRLGIFELLELRKPDWAI-NSHVDLAKELVRPEAA 110
Query: 189 NLVNGILRKLVLLKDNNSLPLPKLE-GNDRAQ-ARALATIYSHPVWMVRRWTKYLGQEEA 246
LVNG+LR L ++ N++P PKLE G ++Q A SHP W+V RW + G+ E
Sbjct: 111 RLVNGVLRNLTRMRTANAIPKPKLEPGFSQSQRADVFGIAASHPSWLVERWMQRFGEAET 170
Query: 247 IKLMVWNNSDPSFSLRANSRKGVTRADL-VMQLNLLKLQVPHELSLHL-DEFIRVKTGLQ 304
+KL+ NN P +SLR N+ K D+ V++ L + V E S +L +E++RV +GLQ
Sbjct: 171 LKLLASNNRRPVYSLRVNTMK----VDIGVLEQELQEGGVDVERSPYLPEEYLRVNSGLQ 226
Query: 305 NVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVY 364
V+ GLLK+GLC VQDESAG+VV+++DPQPG+ ++D CAAPGGK L+ A+ + G+G +
Sbjct: 227 EVLGQGLLKDGLCQVQDESAGMVVSLLDPQPGEHVLDACAAPGGKALFAAARMLGKGQLV 286
Query: 365 AIDINKGRLRILNETAKLHQVNSVIRTI-HADLRTFADNSTVKCDKVLLDAPCSGLGVLS 423
A D N RLR L TA + + T+ ADLR + V D+VLLDAPCSGLGVL+
Sbjct: 287 ANDANARRLRGLPGTAARQGLPAGFLTVGSADLREQSGQRHVPFDRVLLDAPCSGLGVLA 346
Query: 424 KRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLR 483
KRADLRW R+ D++ +LQDELLDAA+ LV+PGG+LVYSTCSI+PEEN+ RV+AFL R
Sbjct: 347 KRADLRWRRQPADIQSNALLQDELLDAAAQLVRPGGLLVYSTCSIEPEENDLRVDAFLSR 406
Query: 484 HPEFSIDPA-DGLVPSDFVTKHGFFFSDPIKHSLDGAFAARLVR 526
HP+F+ +PA GL+P + +GF + P H +DGAF ARL R
Sbjct: 407 HPDFTAEPAPPGLLPDSVLDDNGFMATFPHVHGIDGAFGARLRR 450
>gi|294506884|ref|YP_003570942.1| ribosomal RNA small subunit methyltransferase B [Salinibacter ruber
M8]
gi|294343212|emb|CBH23990.1| Ribosomal RNA small subunit methyltransferase B [Salinibacter ruber
M8]
Length = 448
Score = 372 bits (956), Expect = e-100, Method: Compositional matrix adjust.
Identities = 209/471 (44%), Positives = 290/471 (61%), Gaps = 34/471 (7%)
Query: 57 VSPHRAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVT 116
VSP R + L R++ AF D L +D D R R
Sbjct: 8 VSPARVHALDHLERVRKDDAFVDKLT---------------------IEDADARTRRQAR 46
Query: 117 DIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPPYAVVDENV 176
++V G R RR+LD ++ H + + SME L +ILR+G YE++ P +A VDE V
Sbjct: 47 ELVAGVTRQRRWLDFVLGEAYHGD--YDSMEHRLQEILRLGLYELLFQSTPTHAAVDEYV 104
Query: 177 RLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRR 236
LAK ALRPGAGNLVNG+LR + +D +P P G+D A LA YSHP WMV+R
Sbjct: 105 ELAKQALRPGAGNLVNGVLR--TIDRDREHIPTPDT-GDD---ANDLALRYSHPTWMVQR 158
Query: 237 WTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEF 296
W G +E +L+ NN P +S+R N + + AD+ L+ + V + S +LD +
Sbjct: 159 WLDRFGLDETTELLRANNRRPMYSVRINPLR-TSEADVAAWLD--EHDVVNVDSPYLDRY 215
Query: 297 IRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASC 356
+R+K LQ +I LL +G AVQDESAGLVV ++DPQPG++++D CAAPGGK ++ A+
Sbjct: 216 LRLKR-LQALIAGDLLDDGHVAVQDESAGLVVQLLDPQPGETLIDGCAAPGGKAMHAAAR 274
Query: 357 LSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVKCDKVLLDAP 415
+ G G +YA+D ++ RL + A+ + ++ ADLR +A + D+VLLD P
Sbjct: 275 MEGTGTIYAVDRDEQRLERVETAAEAQGASEMVEAETADLRAWAGRPEPPQGDRVLLDVP 334
Query: 416 CSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEE 475
C+G+GVL+KRA LRW R +ED+EE+ LQDELLDAA+ LV+PGG+LVYSTC+ +PEENE
Sbjct: 335 CTGMGVLAKRAGLRWRRSMEDLEEMAELQDELLDAAAQLVRPGGLLVYSTCTTEPEENER 394
Query: 476 RVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARLVR 526
RVEAFL RH EF+++ A+G VP + V+ GF + P +H +DGAFAARL R
Sbjct: 395 RVEAFLARHDEFTVESAEGHVPDEMVSDAGFLATFPHRHRMDGAFAARLRR 445
>gi|356553505|ref|XP_003545096.1| PREDICTED: LOW QUALITY PROTEIN: ribosomal RNA small subunit
methyltransferase B-like [Glycine max]
Length = 292
Score = 372 bits (956), Expect = e-100, Method: Compositional matrix adjust.
Identities = 186/294 (63%), Positives = 216/294 (73%), Gaps = 26/294 (8%)
Query: 233 MVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLH 292
MVRRWTKYLGQEEAIKLM+WNNS+PSFSLR + L LH
Sbjct: 1 MVRRWTKYLGQEEAIKLMIWNNSEPSFSLRFEQK--------------------FALYLH 40
Query: 293 LDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLY 352
+ F K + GLLK+GLC+V AGLVV+VVDPQPG++I+DCCAAPGGKT Y
Sbjct: 41 ITIFQYSKISFK----LGLLKKGLCSVPGGEAGLVVSVVDPQPGETIIDCCAAPGGKTHY 96
Query: 353 MASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 412
MAS LSGQG ++ +D+N G ETAKLHQV+ +I IHADLRT D+ +K +KVLL
Sbjct: 97 MASHLSGQGKIFVVDVNSGXENSYKETAKLHQVDGIIIAIHADLRTLPDSGQLKSNKVLL 156
Query: 413 DAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEE 472
DAPCSGLGVLSKR DLRWNR LEDME+LK QDELLDAAS LVKPGGVLVYS+CSIDPEE
Sbjct: 157 DAPCSGLGVLSKRVDLRWNRNLEDMEQLKEFQDELLDAASKLVKPGGVLVYSSCSIDPEE 216
Query: 473 NEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARLVR 526
N++RV FL+ HP+F IDP D VP DFVT GFFFS+P+KHS+DG+FAA LVR
Sbjct: 217 NDDRV--FLVTHPDFHIDPVDRYVPPDFVTSSGFFFSNPVKHSVDGSFAAHLVR 268
>gi|83815307|ref|YP_445018.1| ribosomal RNA small subunit methyltransferase B [Salinibacter ruber
DSM 13855]
gi|83756701|gb|ABC44814.1| ribosomal RNA small subunit methyltransferase B [Salinibacter ruber
DSM 13855]
Length = 427
Score = 369 bits (946), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 198/423 (46%), Positives = 276/423 (65%), Gaps = 13/423 (3%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
+D D R R ++V G R RR+LD ++ H + + SME L +ILR+G YE++
Sbjct: 14 EDADARTRRQARELVAGVTRQRRWLDFVLGEAYHGD--YDSMEHRLQEILRLGLYELLFQ 71
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
P +A VDE V LAK ALRPGAGNLVNG+LR + +D +P P G+D A LA
Sbjct: 72 STPTHAAVDEYVELAKQALRPGAGNLVNGVLR--TIDRDREHIPTPDT-GDD---ANDLA 125
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQ 284
YSHP WMV+RW G +E +L+ NN P +S+R N + + AD+ L+ +
Sbjct: 126 LRYSHPTWMVQRWLDRFGLDETTELLRANNRRPMYSVRINPLR-TSEADVAAWLD--EHD 182
Query: 285 VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 344
V + S +LD ++R+K LQ +I LL +G AVQDESAGLVV ++DPQPG++++D CA
Sbjct: 183 VVNVDSPYLDRYLRLKR-LQALIAGDLLDDGHVAVQDESAGLVVQLLDPQPGETLIDGCA 241
Query: 345 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-S 403
APGGK ++ A+ + G G +YA+D ++ RL + A+ + ++ ADLR +A
Sbjct: 242 APGGKAMHAAARMEGTGTIYAVDRDEQRLERVETAAEAQGASEMVEAETADLRAWAARPE 301
Query: 404 TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463
+ D+VLLD PC+G+GVL+KRA LRW R +ED+EE+ LQDELLDAA+ LV+PGG+LVY
Sbjct: 302 PPQGDRVLLDVPCTGMGVLAKRAGLRWRRSMEDLEEMAELQDELLDAAAQLVRPGGLLVY 361
Query: 464 STCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAAR 523
STC+ +PEENE RVEAFL RH F+++ A+G VP + V+ GF + P +H +DGAFAAR
Sbjct: 362 STCTTEPEENERRVEAFLARHDGFAVESAEGHVPDEMVSDAGFLATFPHRHRMDGAFAAR 421
Query: 524 LVR 526
L R
Sbjct: 422 LRR 424
>gi|268316481|ref|YP_003290200.1| sun protein [Rhodothermus marinus DSM 4252]
gi|262334015|gb|ACY47812.1| sun protein [Rhodothermus marinus DSM 4252]
Length = 453
Score = 358 bits (918), Expect = 6e-96, Method: Compositional matrix adjust.
Identities = 197/439 (44%), Positives = 282/439 (64%), Gaps = 15/439 (3%)
Query: 90 DNEMGYVERTLGFR-TKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEP 148
+N+ YV R + T +L+ R T+ V G RWRR+LD L+ + + SMEP
Sbjct: 26 ENDQAYVNRLMSAGLTDELEPEAGRRATEYVAGVTRWRRWLDFLLA--QNYRGRYDSMEP 83
Query: 149 LLLQILRIGFYEIVKLDMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLP 208
L QILR+G YE++ D PPYA ++E V LA+ +RP AG +VN +LR L+ +D
Sbjct: 84 RLRQILRLGLYELLFTDTPPYAALNEAVELARRLVRPQAGAVVNAVLRSLLRQRDF---- 139
Query: 209 LPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKG 268
LP+ + D + LA YSHP W+V+RW G + L+ +NN P F +R + +
Sbjct: 140 LPQPQTGDPVED--LAIRYSHPTWIVQRWLARYGPADTEALLRYNNERPWFGVRVRTDR- 196
Query: 269 VTRADLVMQLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVV 328
++R ++ +L L+ E S LD+FIRV+ L +++ L+++GL AVQDESAGL V
Sbjct: 197 ISRHVVLHRLADRGLEA--EPSPVLDDFIRVQR-LGPLLEDRLIEKGLLAVQDESAGLAV 253
Query: 329 AVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSV 388
++DP P ++IVD CAAPGGKT Y+A+ + G V A D++ R ++ A + S+
Sbjct: 254 RLLDPHPDETIVDACAAPGGKTTYIATRMRDHGRVLAFDVHPKRTELIRRAALQQGLTSI 313
Query: 389 IRTIHADLRTFADN-STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDEL 447
+ DLR ++ ++ D+VLLD PCSGLGVL+KRADLRW+RR E+++EL LQDEL
Sbjct: 314 V-AEALDLRQVSERYPELQADRVLLDVPCSGLGVLAKRADLRWHRRPEELDELVRLQDEL 372
Query: 448 LDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFF 507
L+AA+ L++PGG+LVYSTC+I+PEENE RV AFL RHPEF+++ AD VP++ VT GFF
Sbjct: 373 LEAAARLMRPGGILVYSTCTIEPEENEARVRAFLARHPEFTVERADAWVPAEMVTDEGFF 432
Query: 508 FSDPIKHSLDGAFAARLVR 526
+ P + +DGAFAARL R
Sbjct: 433 ATWPPRDRMDGAFAARLRR 451
>gi|345303794|ref|YP_004825696.1| sun protein [Rhodothermus marinus SG0.5JP17-172]
gi|345113027|gb|AEN73859.1| sun protein [Rhodothermus marinus SG0.5JP17-172]
Length = 453
Score = 357 bits (917), Expect = 6e-96, Method: Compositional matrix adjust.
Identities = 198/439 (45%), Positives = 281/439 (64%), Gaps = 15/439 (3%)
Query: 90 DNEMGYVERTLGFR-TKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEP 148
+N+ YV R + T +L+ R T+ V G RWRR+LD L+ + + SMEP
Sbjct: 26 ENDQAYVNRLMSAGLTDELEPEAGRRATEYVAGVTRWRRWLDFLLA--QNYRGRYDSMEP 83
Query: 149 LLLQILRIGFYEIVKLDMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLP 208
L QILR+G YE++ D PPYA ++E V LA+ +RP AG +VN +LR L+ +D
Sbjct: 84 RLRQILRLGLYELLFTDTPPYAALNEAVELARRLVRPQAGAVVNAVLRSLLRQRDF---- 139
Query: 209 LPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKG 268
LP+ + D + LA YSHP W+V+RW G + L+ +NN P F +R + +
Sbjct: 140 LPQPQTGDPVED--LAIRYSHPTWIVQRWLARYGPADTEALLRYNNERPWFGVRVRTDR- 196
Query: 269 VTRADLVMQLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVV 328
++R ++ +L L+ E S LD+FIRV+ L +++ L+++GL AVQDESAGL V
Sbjct: 197 ISRHVVLHRLADRGLEA--EPSPVLDDFIRVQR-LGPLLEDRLIEKGLLAVQDESAGLAV 253
Query: 329 AVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSV 388
++DP P ++IVD CAAPGGKT Y+A+ + G V A D++ R ++ A + S+
Sbjct: 254 RLLDPHPDETIVDACAAPGGKTTYIATRMRDHGRVLAFDVHPKRTELIRRAALQQGLTSI 313
Query: 389 IRTIHADLRTFADN-STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDEL 447
+ DLR ++ ++ D+VLLD PCSGLGVL+KRADLRW+RR E+++EL LQDEL
Sbjct: 314 V-AEALDLRQVSERYPELQADRVLLDVPCSGLGVLAKRADLRWHRRPEELDELVRLQDEL 372
Query: 448 LDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFF 507
L+ A+ LV+PGGVLVYSTC+I+PEENE RV AFL RHPEF+++ AD VP++ VT GFF
Sbjct: 373 LETAARLVRPGGVLVYSTCTIEPEENEARVRAFLARHPEFTVERADAWVPAEMVTDEGFF 432
Query: 508 FSDPIKHSLDGAFAARLVR 526
+ P + +DGAFAARL R
Sbjct: 433 ATWPPRDRMDGAFAARLRR 451
>gi|302848840|ref|XP_002955951.1| hypothetical protein VOLCADRAFT_42105 [Volvox carteri f.
nagariensis]
gi|300258677|gb|EFJ42911.1| hypothetical protein VOLCADRAFT_42105 [Volvox carteri f.
nagariensis]
Length = 426
Score = 335 bits (858), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 192/435 (44%), Positives = 266/435 (61%), Gaps = 27/435 (6%)
Query: 110 RDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPPY 169
RD RLV ++V G R RR LD ++ L ++T + ME + Q+LR+G YE+ + + PY
Sbjct: 1 RDQRLVKELVAGVTRLRRRLDFVVANLT--QQTPADMESGVRQVLRLGVYELTERRLAPY 58
Query: 170 AVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSH 229
A+ +E+V+LAKV PGAG+ VNG+LR + +LP P++ R LA +SH
Sbjct: 59 AL-NEHVQLAKVVSGPGAGSFVNGVLRSAARQVEAGTLPTPEVR-----PLRLLALQHSH 112
Query: 230 PVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANS-RKGVTRADLVMQLNLLKLQVPHE 288
P W+V RW G++ L+ NN P +++R N+ R G + L+ QL + ++
Sbjct: 113 PNWLVSRWLSRFGRQGTEALLRRNNMPPIYTVRVNTLRAGASVERLLGQLAAVGVEA-EA 171
Query: 289 LSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGG 348
L EFIR+++GLQ ++ G + +G VQDESAGLVV+++DPQPG+ ++DCCAAPGG
Sbjct: 172 SPLMPTEFIRIRSGLQKLLAEGFVSDGSLVVQDESAGLVVSLLDPQPGERLLDCCAAPGG 231
Query: 349 KTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA---DNSTV 405
KTL+ A+ + G G + A+D++ RL L A+L V ++ T DLR D +T+
Sbjct: 232 KTLFAAARMRGHGSITALDVSAPRLGALRRAAELAGVEDMVTTRAVDLRRRVRQPDTATM 291
Query: 406 -KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464
+ DKVLLDAPC+G GVL+KRADLRW R E + EL LQ ELL+AA+ LV PGGVLVYS
Sbjct: 292 WQYDKVLLDAPCTGTGVLAKRADLRWRRTPEQLYELVALQQELLEAAACLVAPGGVLVYS 351
Query: 465 TCSIDPEENEERVEAFLLRHPEFSIDP-------------ADGLVPSDFVTKHGFFFSDP 511
TC I+ EE++ERV FL RHPEF ++P VP VT GF + P
Sbjct: 352 TCDIEEEEDQERVRTFLERHPEFEVEPAAAAAVPSGRRGFGASWVPPSVVTAEGFMATLP 411
Query: 512 IKHSLDGAFAARLVR 526
H DGAFAARL R
Sbjct: 412 HVHDTDGAFAARLRR 426
>gi|307102870|gb|EFN51136.1| hypothetical protein CHLNCDRAFT_8770, partial [Chlorella
variabilis]
Length = 425
Score = 299 bits (765), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 177/428 (41%), Positives = 239/428 (55%), Gaps = 17/428 (3%)
Query: 110 RDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPPY 169
R R VT++V G RWRR LD + L + + ++ + LR+G YE+ +L +
Sbjct: 4 RQARGVTELVSGVTRWRRRLDFSLTQLLRG-RDVAQLDAPVRNALRLGLYELAELKNATH 62
Query: 170 AVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGND---RAQARALATI 226
V++ V L K GA N NG+LR + + +LP P + A LA
Sbjct: 63 GVINSYVDLVKSVQHQGAANATNGVLRNVARGLEAGTLPQPPRPAQGMPPQQAAEVLAVG 122
Query: 227 YSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVP 286
SHP W+V+RW G + L+ NN P ++LR GV QL +Q
Sbjct: 123 ASHPTWLVQRWLAQYGPAATLALLKHNNMRPRYALRLAP--GVDAEAFCRQLARSGVQAA 180
Query: 287 HELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAP 346
L EF+ V GLQ ++ GL++ G QDE+AGLVVA +DPQPG++++D CAAP
Sbjct: 181 PSRYLP-REFVTVDRGLQALLVEGLVQRG--EAQDEAAGLVVAALDPQPGETLLDACAAP 237
Query: 347 GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA------ 400
GGK L AS + G+GL+ A+D+++ RL L A ++RT ADLR FA
Sbjct: 238 GGKALGAASRMRGRGLITALDLSRSRLAALRHAALRQPHGDMVRTFAADLRRFATLRYRP 297
Query: 401 DNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGV 460
+ + D+VLLDAPCSG GVL+KRADLRW R E++ +L LQ ELLDAA+ LV PGG+
Sbjct: 298 EGPPWQYDRVLLDAPCSGTGVLAKRADLRWRRTPEELRQLAALQGELLDAAAGLVAPGGL 357
Query: 461 LVYSTCSIDPEENEERVEAFLLRHPEFSID--PADGLVPSDFVTKHGFFFSDPIKHSLDG 518
LVYSTCSI+ EENE++V AFL R P + ++ PA VP + G P H DG
Sbjct: 358 LVYSTCSIEQEENEQQVAAFLARQPGYELEAVPAGTGVPPQCLAPDGCLRMLPHVHGTDG 417
Query: 519 AFAARLVR 526
AFAARL R
Sbjct: 418 AFAARLRR 425
>gi|383754590|ref|YP_005433493.1| putative ribosomal RNA small subunit methyltransferase B
[Selenomonas ruminantium subsp. lactilytica TAM6421]
gi|381366642|dbj|BAL83470.1| putative ribosomal RNA small subunit methyltransferase B
[Selenomonas ruminantium subsp. lactilytica TAM6421]
Length = 444
Score = 272 bits (695), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 168/427 (39%), Positives = 238/427 (55%), Gaps = 15/427 (3%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
R +L D+D R VT++V G ++ LD + L + + + ++ +ILR+G Y+I
Sbjct: 30 LRKAELSDQDRRFVTELVYGAVKAGDTLDWI--LRRYVNRPLKKIPTMVREILRLGLYQI 87
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
LD +P A + V LAK G VN +LR V + + P EG +A
Sbjct: 88 FYLDKVPASAACNTAVELAKKYSHAGTVKFVNAVLRTAVREPEKAAFP----EGKGKA-T 142
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
LA HP W+V+RW K G EEA KL ++N P S+R N+ K RA L+ L
Sbjct: 143 EGLALKSQHPYWLVKRWVKQFGFEEAEKLCAFDNGQPVLSVRTNTLK-TDRAALLTALQE 201
Query: 281 LKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIV 340
+V + S E IRV T + L+EGLC VQDES+ LV VVDPQPG+ I+
Sbjct: 202 AGAEV--QESQWTPEGIRV-TSHGALDDLAPLQEGLCQVQDESSMLVAHVVDPQPGELII 258
Query: 341 DCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 400
DCC+APGGKT +MA+ + +G + A DI + +L + E A+ ++ +I T D R
Sbjct: 259 DCCSAPGGKTTHMAALMKNEGRIVAGDIYEHKLTRIEENAQRLGID-IIETNLIDAREIG 317
Query: 401 DNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGV 460
+ D+VL+DAPCSGLGVL ++ D RWN+ E++ L LQ E+LD+A+ +K GGV
Sbjct: 318 EEYEDMADRVLVDAPCSGLGVLRRKPDARWNKSAEEIAALPPLQGEILDSAAKALKAGGV 377
Query: 461 LVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAF 520
LVYSTC+ID EN+E VEAFL RHPEF+++ +P + P + DG F
Sbjct: 378 LVYSTCTIDRSENDEVVEAFLARHPEFTLEQTGAFLPHKREDMMVQLY--PQRDGTDGFF 435
Query: 521 AARLVRA 527
AR+ +A
Sbjct: 436 IARMRKA 442
>gi|397690734|ref|YP_006527988.1| Ribosomal RNA small subunit methyltransferase B [Melioribacter
roseus P3M]
gi|395812226|gb|AFN74975.1| Ribosomal RNA small subunit methyltransferase B [Melioribacter
roseus P3M]
Length = 457
Score = 267 bits (682), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 161/440 (36%), Positives = 249/440 (56%), Gaps = 17/440 (3%)
Query: 90 DNEMGYVERTLGFRTKD--LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSME 147
D Y+++ L K+ L D L+ +IV G +RW LD ++ + FS
Sbjct: 30 DRTDAYLDKLLEIELKNSNLSSLDKALLFEIVHGVMRWMGRLDWILTGFYKGQ--FSKCV 87
Query: 148 PLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNS 206
P + LR+ Y+I+ LD +P YA V+E V K +L N +LR ++ KD
Sbjct: 88 PNVKNALRVALYQILFLDKVPDYAAVNEAVEFVKKLQGQKYADLANALLRNIIRNKDGIR 147
Query: 207 LPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSR 266
P P + L+ YSHP WMV+RW G+E KL+ NNS P +LR N+
Sbjct: 148 YPDP-----EEDLVAYLSAYYSHPSWMVKRWLARFGRENTEKLLAANNSKPVLALRVNNL 202
Query: 267 KGVTRADLVMQLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGL 326
VT + + +L L ++++ + S L EFIR+ L N+ K G VQDES GL
Sbjct: 203 --VTTMEELKKL-LDEVELRYTDSKLLPEFIRL-NNLVNITDWKYFKLGYFTVQDESTGL 258
Query: 327 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVN 386
V ++ P+PG ++D CAAPGGK+ ++A + +G + A+D RL+IL + + +V
Sbjct: 259 PVKLLKPEPGMRVLDLCAAPGGKSAFIADMMKNEGEIVALDRFDSRLKILEKNLERLKVT 318
Query: 387 SVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDE 446
+V RT D + D+ D+VL+DAPCSGLG L+K+ DL+W + L D+ ++ +Q +
Sbjct: 319 NV-RTHAIDALEYEDDRLF--DRVLVDAPCSGLGTLTKKPDLKWKKDLGDIRKIVNIQYD 375
Query: 447 LLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGF 506
LL + L+KPGG LVYSTC+I+PEEN E + FL ++P+F ++PA L+ D+V ++G+
Sbjct: 376 LLTKGASLLKPGGSLVYSTCTIEPEENYELIIKFLEKNPDFQLEPAGDLIAKDYVDENGY 435
Query: 507 FFSDPIKHSLDGAFAARLVR 526
+ P H +DG+FAA++ +
Sbjct: 436 VRTLPHIHGVDGSFAAKITK 455
>gi|313893390|ref|ZP_07826962.1| ribosomal RNA small subunit methyltransferase B [Veillonella sp.
oral taxon 158 str. F0412]
gi|313442031|gb|EFR60451.1| ribosomal RNA small subunit methyltransferase B [Veillonella sp.
oral taxon 158 str. F0412]
Length = 451
Score = 263 bits (673), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 155/423 (36%), Positives = 248/423 (58%), Gaps = 19/423 (4%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L D D R T++V G IR + YLD +I ++ + ++++ILR+G Y+I+ +D
Sbjct: 43 LSDLDRRFFTELVYGVIRRKNYLDAIIVHFA--KRPLKKLSSMVVEILRLGIYQIIYMDK 100
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A V+E+V+LAK R G VN +LR + L++ +S+ + +L +++A ++
Sbjct: 101 VPESAAVNESVKLAKKLTR-GLSGFVNAVLRSV--LRECDSISIGELA---KSEAEEISF 154
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
IY+ P+W+V W +G+++ + L W N P + R N+ K V+ D + +L L V
Sbjct: 155 IYNQPLWLVNLWMNEMGKDKTVDLCAWFNEQPRLTARINTVK-VSIDDCIKELQNLGWTV 213
Query: 286 PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAA 345
E + E + + + ++ +A + EG D+++ LV VVDPQPG+ I+DCCAA
Sbjct: 214 --EQDKDIPEVVYINSHQGHLEKAKPVIEGHITFMDKASMLVAHVVDPQPGERILDCCAA 271
Query: 346 PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTV 405
PGGK+++MAS ++ G + + DI +L ++N+ A+ V S++ T D R DN
Sbjct: 272 PGGKSMHMASLMNNTGAIMSCDIYDHKLDLMNQNAERLGV-SIVSTKLQDGRYLPDNWKE 330
Query: 406 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465
+ D+VL+DAPCSGLG+L K+ D+RW + + + EL LQ E+L+ AS +VK G LVYST
Sbjct: 331 QFDRVLVDAPCSGLGILQKKLDMRWRKSEDLLNELPPLQLEILEKASEMVKVNGYLVYST 390
Query: 466 CSIDPEENEERVEAFLLRHPEFSIDPAD--GLVPSDFVTKHGFFFSDPIKHSLDGAFAAR 523
C+I+ ENE+ +E FL H F IDP GL P+ K G + P + +DG F AR
Sbjct: 391 CTINSGENEDVLEKFLATHKNFVIDPVSYKGLPPA----KDGMISTYPPRDHMDGFFMAR 446
Query: 524 LVR 526
+ R
Sbjct: 447 MKR 449
>gi|238019375|ref|ZP_04599801.1| hypothetical protein VEIDISOL_01239 [Veillonella dispar ATCC 17748]
gi|237864074|gb|EEP65364.1| hypothetical protein VEIDISOL_01239 [Veillonella dispar ATCC 17748]
Length = 451
Score = 261 bits (668), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 153/423 (36%), Positives = 247/423 (58%), Gaps = 19/423 (4%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L D D R T++V G IR + YLD +I ++ + ++++ILR+G Y+I+ +D
Sbjct: 43 LSDLDRRFFTELVYGVIRRKNYLDAIIIHFA--KRPLKKLSSMVVEILRLGIYQIIYMDK 100
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A V+E+V+LAK R G VN +LR + L++++S+ + +L +++A ++
Sbjct: 101 VPESAAVNESVKLAKNLTR-GLSGFVNAVLRSV--LRESDSISIGELA---KSEAEEISF 154
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
IY+ P+W+V W +G+++ I L W N P + R N+ K ++ D + +L L V
Sbjct: 155 IYNQPLWLVNLWMNEMGKDKTIDLCAWFNEQPRLTARINTIK-ISIEDCLKELQDLGWTV 213
Query: 286 PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAA 345
E ++ E + + ++ +A + +G D+++ LV VVDPQPG+ I+DCCAA
Sbjct: 214 --EQDTYIPEVVYINAHQGHLEKAKPVIDGHITFMDKASMLVAHVVDPQPGERILDCCAA 271
Query: 346 PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTV 405
PGGK+++MAS ++ G + + DI +L ++N A+ V S++ T D R DN
Sbjct: 272 PGGKSMHMASLMNNTGAIMSCDIYDHKLDLMNHNAQRLGV-SIVSTKLQDGRYLPDNWKE 330
Query: 406 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465
+ D+VL+DAPCSGLG+L K+ D+RW + + EL LQ E+L+ A+ +VK G LVYST
Sbjct: 331 QFDRVLVDAPCSGLGILQKKLDMRWRKTESLLTELPPLQLEILEKAAEMVKVNGYLVYST 390
Query: 466 CSIDPEENEERVEAFLLRHPEFSIDPA--DGLVPSDFVTKHGFFFSDPIKHSLDGAFAAR 523
C+I+ ENE+ +E FL H F IDP +GL PS G + P + +DG F AR
Sbjct: 391 CTINSGENEDVLEKFLATHKNFVIDPVSYEGLPPS----TDGMITTYPPRDHMDGFFMAR 446
Query: 524 LVR 526
+ R
Sbjct: 447 MKR 449
>gi|375085444|ref|ZP_09732083.1| ribosomal RNA small subunit methyltransferase B [Megamonas
funiformis YIT 11815]
gi|374567314|gb|EHR38537.1| ribosomal RNA small subunit methyltransferase B [Megamonas
funiformis YIT 11815]
Length = 442
Score = 260 bits (664), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 158/427 (37%), Positives = 242/427 (56%), Gaps = 17/427 (3%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
+ L D+D R +T++V GT++ L L L + + +EP ++ ILR+G Y+I
Sbjct: 29 LQKNQLSDQDRRFITELVYGTVKAGDTL--LWILKKFVNRPLNKIEPTIINILRLGIYQI 86
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
V +D +P A +E V LAK G+ VNG+LR L+ + ++P GN +A
Sbjct: 87 VFMDKIPESAACNEAVNLAKKYSNQGSAKFVNGVLRNLIRQPEKYAMP----TGN---KA 139
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQL-N 279
LA HP+W+V+++ G E AIKL +NN++ LR N+ K TR +L+ +L N
Sbjct: 140 SELAIREQHPLWLVKKFIHTFGSEAAIKLCQFNNTNAPLVLRTNTLK-TTRQELITELIN 198
Query: 280 LLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSI 339
+P +L+ E I KT ++ Q L+ G VQDES+ LV VVDP+P + I
Sbjct: 199 AGCEVIPSKLA---PEGIICKTH-TSLNQLAPLQNGFAQVQDESSMLVAHVVDPKPNEFI 254
Query: 340 VDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF 399
+D C+APGGKT +MA+ + +G + A DI + +L+++ + A +N +I D R
Sbjct: 255 IDTCSAPGGKTTHMATLMQNKGKIIACDIYEHKLKLIQDNANRLGIN-IIEPKLLDAREI 313
Query: 400 ADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGG 459
+ + DKVL+DAPCSG+GVL ++ D RWN+ E E+L LQ +L++A+ VKP G
Sbjct: 314 GNQYKNQADKVLVDAPCSGMGVLRRKPDSRWNKTAEIFEKLPPLQLAILESAARAVKPQG 373
Query: 460 VLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGA 519
VLVYSTC+I P+EN E + FL +HP+F ++ +P +K P K + DG
Sbjct: 374 VLVYSTCTIMPQENIEIINQFLAKHPDFVLEDIRKYLPFKTKSKEKTLQLMPYKDNTDGF 433
Query: 520 FAARLVR 526
F AR+ +
Sbjct: 434 FIARMYK 440
>gi|427414320|ref|ZP_18904510.1| ribosomal RNA small subunit methyltransferase B [Veillonella ratti
ACS-216-V-Col6b]
gi|425714696|gb|EKU77699.1| ribosomal RNA small subunit methyltransferase B [Veillonella ratti
ACS-216-V-Col6b]
Length = 449
Score = 255 bits (652), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 154/423 (36%), Positives = 240/423 (56%), Gaps = 15/423 (3%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L D D R T++V G +R R YLD +I L ++ + ++++ILR+G Y+++ +D
Sbjct: 41 LSDIDRRFFTELVYGVVRRRNYLDAIIAALA--KRPLRKLSSIVVEILRLGLYQLIYMDK 98
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A V+E+V+LAK R G VNG+LR L++ +S + +L N + LA
Sbjct: 99 VPDSAAVNESVKLAKKMAR-GLDGFVNGVLRNF--LRNRDSYSIDELAKN---EVERLAY 152
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
IY+ PVW++ W K G+ E I L W N P + R N+ K + AD + L K
Sbjct: 153 IYNQPVWLLDLWLKTYGETETIGLCTWFNERPRLTARINTLK-TSVADGMSALE--KAGW 209
Query: 286 PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAA 345
E + L E + + ++ A ++K GL DE++ V VVDP+PG+ ++DCCAA
Sbjct: 210 LAEATGKLPEAVHITHHTGSLESAPIVKAGLITFTDEASMAVAYVVDPKPGEKVLDCCAA 269
Query: 346 PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTV 405
PGGKT+++A+ ++ +G + A DI++ +L ++ AK V + D
Sbjct: 270 PGGKTMHLAARMNNEGQIVADDIHEHKLGLMEANAKRLGVTIADFNLQ-DATKLPQTWYN 328
Query: 406 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465
+ DKVL+DAPCSGLG+L ++ D+RW++ E + EL LQ ++++ A+ VKPGGVLVYST
Sbjct: 329 QFDKVLVDAPCSGLGILQRKLDMRWHKTPESLTELPKLQQQIIETAAKTVKPGGVLVYST 388
Query: 466 CSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARLV 525
C+I+ ENE VEAFL + F ++ A +P F T+ P + +DG F ARL
Sbjct: 389 CTINRAENEGVVEAFLKANDNFELEDASSFLP--FETEGPMVTLWPHRDEMDGFFIARLR 446
Query: 526 RAF 528
+A
Sbjct: 447 KAL 449
>gi|307150080|ref|YP_003885464.1| sun protein [Cyanothece sp. PCC 7822]
gi|306980308|gb|ADN12189.1| sun protein [Cyanothece sp. PCC 7822]
Length = 450
Score = 255 bits (652), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 164/432 (37%), Positives = 235/432 (54%), Gaps = 17/432 (3%)
Query: 101 GFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYE 160
G + L D LVT++V G +R R LD LI L +KT + P L IL+IG Y+
Sbjct: 32 GLKQAQLKSLDRGLVTELVYGIVRRVRTLDQLITQL--GKKTATQQPPDLRIILQIGLYQ 89
Query: 161 IVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKL--VLLKDNNSLPLPKLEGNDR 217
+ LD +P A V+ +V LAK +VNGILR+ + + + L LP +DR
Sbjct: 90 LRYLDQIPVSAAVNTSVELAKKNQLGKLSGVVNGILRQYDRIQAQGKDPLELP----SDR 145
Query: 218 AQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQ 277
L ++S P W+V++W + G+ E KL W N +R N K ++
Sbjct: 146 I--NRLGVLHSFPNWIVQQWLEEWGEGETEKLCEWFNQPAMIDIRVNLLKTTVEE---VE 200
Query: 278 LNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQ 337
L K V HL + +R+ G +++ Q +EG VQD SA LV ++DPQP +
Sbjct: 201 LGFSKAGVKVLPVPHLPQALRLIGGSRSISQLPGFEEGWWTVQDSSAQLVTHLLDPQPEE 260
Query: 338 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR 397
I+D CAAPGGKT ++A + +G ++A D RLR + + A+ Q+NS I+ D R
Sbjct: 261 IIIDACAAPGGKTTHIAELMQDRGTIWACDRVASRLRKVQQNAQRLQLNS-IKICSGDSR 319
Query: 398 TFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKP 457
D+VL+DAPCSGLG L KR D+RW + E +EEL +LQ ELL+ A+ +KP
Sbjct: 320 QLTQFRET-ADRVLIDAPCSGLGTLHKRPDIRWRQTPEKIEELSVLQRELLEEAASWIKP 378
Query: 458 GGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVP-SDFVTKHGFFFSDPIKHSL 516
GVLVY+TC+++P ENE+ +EAFL HP + I P P + F T G+ P H +
Sbjct: 379 KGVLVYATCTLNPLENEKLIEAFLHHHPNWQIQPPLSSSPAAAFATTPGWIKVLPHLHLM 438
Query: 517 DGAFAARLVRAF 528
DG F +LV+ F
Sbjct: 439 DGFFMVKLVKGF 450
>gi|119487592|ref|ZP_01621202.1| Fmu, rRNA SAM-dependent methyltransferase [Lyngbya sp. PCC 8106]
gi|119455761|gb|EAW36897.1| Fmu, rRNA SAM-dependent methyltransferase [Lyngbya sp. PCC 8106]
Length = 450
Score = 255 bits (651), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 157/431 (36%), Positives = 233/431 (54%), Gaps = 17/431 (3%)
Query: 101 GFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYE 160
R DL + RL T++V G +R RR LD LI +K P L IL +GFY+
Sbjct: 30 NLRKADLSAVNRRLTTELVYGCVRRRRSLDALIDQFA--QKKSHQQPPDLRIILHLGFYQ 87
Query: 161 IVKL-DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQ 219
+ L +P A V+ +V LAK G VNGILR+ + ++ + P L D
Sbjct: 88 LYYLSQIPASAAVNTSVELAKTNGLSGLSGFVNGILREYLRQQEKQTQNRPILRLEDENL 147
Query: 220 ARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLN 279
+ L +YS P W++ W LG EE KL W N P+ LR N+ K +R + +L
Sbjct: 148 IQTLGNLYSFPDWILEYWLNQLGLEETEKLCQWFNQSPTIDLRINALK-TSRDTVETELK 206
Query: 280 LLKLQV---PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPG 336
L + V PH L + +R+ + + ++G ++QD SA V ++DPQPG
Sbjct: 207 LAGINVTPIPH-----LSQALRLSGSIGEIQNLPGYRQGWWSIQDSSAQWVSHILDPQPG 261
Query: 337 QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADL 396
+ I+D CAAPGGKT ++A + G + A D K RL+ + + + Q+ S I T AD+
Sbjct: 262 EIIIDACAAPGGKTTHIAELMQDTGTILAFDRAKSRLKKVQQNQERLQLKS-ITTQLADI 320
Query: 397 RTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVK 456
R ++ ++ D+VLLDAPCSGLG L +RAD RW ++++EL LQ ELL+ + VK
Sbjct: 321 RELSEYNSC-ADRVLLDAPCSGLGTLHRRADARWRHTQQNVQELSELQTELLEKTATWVK 379
Query: 457 PGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVP-SDFVTKHGFFFSDPIKHS 515
PGG LVY+TC+I P ENE +++FL + + ID + +P D +T G+ P + +
Sbjct: 380 PGGYLVYATCTIHPLENETIIQSFLSHNLNWEIDLPE--IPLQDVLTSEGYLKVWPHRQN 437
Query: 516 LDGAFAARLVR 526
+DG F +L R
Sbjct: 438 MDGFFIVKLKR 448
>gi|427418132|ref|ZP_18908315.1| ribosomal RNA small subunit methyltransferase RsmB [Leptolyngbya
sp. PCC 7375]
gi|425760845|gb|EKV01698.1| ribosomal RNA small subunit methyltransferase RsmB [Leptolyngbya
sp. PCC 7375]
Length = 446
Score = 254 bits (650), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 171/455 (37%), Positives = 245/455 (53%), Gaps = 31/455 (6%)
Query: 75 GAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLIC 134
GAFAD+ +ER +G L D RL T+++ GT+R +R LD LI
Sbjct: 18 GAFADVA--------------LERNIGKFA--LTPADRRLATELIYGTVRRQRTLDALID 61
Query: 135 LLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNG 193
L S + L +IL +GFY++ LD +P +AVVD V+LAK +VNG
Sbjct: 62 QLGKRRADQQSAD--LRRILHVGFYQLRYLDHVPNHAVVDTTVQLAKQQRLGKLSGVVNG 119
Query: 194 ILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWN 253
+LR+ + L++ PL +L ++ A AL ++S+P W+++ W + + E+ +L W
Sbjct: 120 MLRQYIRLQEAKGDPL-QLPTDEIA---ALGVLHSYPDWIIQAWQQLVPVEDVARLCEWF 175
Query: 254 NSDPSFSLRANSRKGVTRADLVMQLNLLKLQV-PHELSLHLDEFIRVKTGLQNVIQAGLL 312
N P LR N R T + L L V PH + + IR+ + NV Q
Sbjct: 176 NQAPKIDLRVN-RLRTTVEQVTTALTDHGLTVAPHA---GIPDAIRIVGPMGNVRQLPGY 231
Query: 313 KEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGR 372
+ G VQD SA LV +V+PQPG++++D C APGGKT ++A + QG V D R
Sbjct: 232 EAGWWMVQDSSAQLVSYLVNPQPGETVIDACGAPGGKTTHLAEMMGDQGRVLGCDRTSSR 291
Query: 373 LRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNR 432
L + + AK Q+NS I T+ D R + + D+VLLD PCSGLG L + AD RW +
Sbjct: 292 LNKIRQNAKRLQLNS-IETVMGDSREHPEFKGI-ADRVLLDVPCSGLGTLHRHADARWRQ 349
Query: 433 RLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPA 492
+ L ILQ ELL++A VKP GVLVYSTC++ P+EN+ ++ FL HP++ IDP
Sbjct: 350 TPNSIAGLTILQRELLESAVDWVKPDGVLVYSTCTLHPDENQNLIQTFLSDHPDWQIDPP 409
Query: 493 DGLVP-SDFVTKHGFFFSDPIKHSLDGAFAARLVR 526
+ P + FVT G+ P K +DG F RL R
Sbjct: 410 EDDSPVAPFVTDQGWAMVWPHKQDMDGFFMVRLRR 444
>gi|269797911|ref|YP_003311811.1| sun protein [Veillonella parvula DSM 2008]
gi|269094540|gb|ACZ24531.1| sun protein [Veillonella parvula DSM 2008]
Length = 451
Score = 254 bits (650), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 151/421 (35%), Positives = 243/421 (57%), Gaps = 15/421 (3%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L D D R T++V G IR + YLD +I ++ + ++L+ILR+G Y+I+ +D
Sbjct: 43 LSDLDRRFFTELVYGVIRRKNYLDAIIVFFA--KRPIKKLSSMVLEILRLGIYQIIYMDK 100
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A V+E+V+LAK R G VN +LR + L++++S+ + +L +++A ++
Sbjct: 101 VPESAAVNESVKLAKKLTR-GLSGFVNAVLRSV--LRESDSISIGELA---KSEAEEISF 154
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
IY+ P+W+V W K +G+++ + L W N P + R N+ K V+ D + +L L V
Sbjct: 155 IYNQPLWLVNFWIKEMGKDKTVDLCAWFNEQPRLTSRINTVK-VSIEDCLKELEDLDWIV 213
Query: 286 PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAA 345
E ++ E + + ++ +A + +G D+++ LV VVDPQPG+ I+DCCAA
Sbjct: 214 --EQDTYIPEVVYIDGHQGHLEKAKPVLDGHITFMDKASMLVAHVVDPQPGERILDCCAA 271
Query: 346 PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTV 405
PGGK+++MAS ++ G + + DI +L ++N+ A+ V S+I T D R DN
Sbjct: 272 PGGKSMHMASLMNNTGAIMSCDIYDHKLELINQNAERLGV-SIISTKLQDGRYLPDNWKE 330
Query: 406 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465
+ D+VL+DAPCSGLG+L K+ D+RW + + EL LQ E+L+ AS +VK G LVYST
Sbjct: 331 QFDRVLVDAPCSGLGILQKKLDMRWRKTESLLIELPPLQLEILEKASKMVKVNGYLVYST 390
Query: 466 CSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARLV 525
C+++ ENE + FL H F IDP + G + P + +DG F AR+
Sbjct: 391 CTMNSGENEAVLNKFLAIHKNFIIDPVSYKGAPQAID--GMITTYPPRDHMDGFFMARMK 448
Query: 526 R 526
R
Sbjct: 449 R 449
>gi|354582479|ref|ZP_09001381.1| sun protein [Paenibacillus lactis 154]
gi|353199878|gb|EHB65340.1| sun protein [Paenibacillus lactis 154]
Length = 454
Score = 254 bits (649), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 158/427 (37%), Positives = 240/427 (56%), Gaps = 23/427 (5%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L D L T+++ GTI LD+ L + K ++P + +LR+ Y+I+ LD
Sbjct: 43 LSKSDAGLATELIYGTISRLNTLDYF--LDKYVNKGTRKLQPWVRALLRLSLYQIIYLDR 100
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P +AVV E V LAK G +VNG+LR + L+ SL +P D A+ ++
Sbjct: 101 IPDHAVVSEAVNLAKRRGHQGISGMVNGVLRNI--LRQKESLAIPA----DLPAAKRISL 154
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
+SHP W+V RW G+E A + NN P+ S+R N+ ++R +++ ++ LQ
Sbjct: 155 QHSHPEWLVERWISQYGRETAEAICSANNEPPAVSVRVNTTM-ISREEMLKEMEGHGLQA 213
Query: 286 -PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 344
P LS + V G N+ +EG+ ++QDES+ LV V P+PG ++DCCA
Sbjct: 214 APSSLS----PYGIVVKGAGNMALTDWYREGMISIQDESSMLVAEAVGPEPGMRVLDCCA 269
Query: 345 APGGKTLYMASCLSGQGLVYAIDIN--KGRLRILNETAKLHQVNSVIRTIHAD-LRTFAD 401
APGGK+ +M + +G + A DI+ KG+L I ++ A+L IRT+ D + A
Sbjct: 270 APGGKSAHMGELMKDEGSIVANDIHSHKGKL-IADQAARLGL--DCIRTVTGDAIELPAR 326
Query: 402 NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVL 461
D++LLDAPCSGLGV+ ++ DL+W + ED+ E+ LQ LLD+ S L++PGGVL
Sbjct: 327 FEPASFDRILLDAPCSGLGVIRRKPDLKWGKTEEDIREIAALQSRLLDSVSALLRPGGVL 386
Query: 462 VYSTCSIDPEENEERVEAFLLRHPEFSIDPADGL--VPSDFVTKHGFFFSDPIKHSLDGA 519
VYSTC+I+P+ENE V +F+ RHPEF +D L + + + + G P + DG
Sbjct: 387 VYSTCTIEPQENEGVVTSFVNRHPEFELDETGSLSRLKDNALVRGGGIQILPQHYHSDGF 446
Query: 520 FAARLVR 526
+ ARL R
Sbjct: 447 YIARLRR 453
>gi|189347315|ref|YP_001943844.1| sun protein [Chlorobium limicola DSM 245]
gi|189341462|gb|ACD90865.1| sun protein [Chlorobium limicola DSM 245]
Length = 451
Score = 253 bits (647), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 158/436 (36%), Positives = 233/436 (53%), Gaps = 41/436 (9%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD 165
L+ D L T++V G +R R LD I H + P+L ILRIG Y+++ LD
Sbjct: 39 SLNQNDRALATELVNGVLRRRLTLDTFIGRYYHHR--YEKAAPVLKNILRIGAYQLIYLD 96
Query: 166 -MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSL-PLPKLEGNDRAQARAL 223
+P +A V+E+V LA+ LVN +LR + + L P K++ R L
Sbjct: 97 RIPHWAAVNESVSLARRYKGEHMAKLVNAVLRNITPETISADLDPSGKMKEIQR-----L 151
Query: 224 ATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKL 283
+ SHP W++ RW G+E A ++ +NN P R N K
Sbjct: 152 SITASHPEWLLERWIARYGKERAEAILAYNNRTPLTGFRINPLK---------------- 195
Query: 284 QVPHE-LSLHLDEFIRV-KTGLQNVIQA-------GLLKEGLCAVQDESAGLVVAVVDPQ 334
P E L+ + R+ K+GL+N + +K+GL VQ+ + GL + DPQ
Sbjct: 196 TTPQEFLATENSKTARIGKSGLENFFLSTEFSCYESAIKQGLLTVQNPTQGLACLLCDPQ 255
Query: 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHA 394
PG +++D CAAPGGK+ + + G + A+D+ +L+ L+E A + ++I T A
Sbjct: 256 PGSTLLDLCAAPGGKSTFCGELMQNTGNITAVDLYSQKLQKLSEHAGELGI-TIISTAEA 314
Query: 395 DLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLL 454
D RT+ +LLDAPCSG GVL++RA+LRW E + EL +LQ ELLD A+ L
Sbjct: 315 DARTYLPEQPPAV--ILLDAPCSGTGVLARRAELRWKLTSETITELALLQVELLDHAASL 372
Query: 455 VKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTK---HGFFFSDP 511
+ G L+Y+TCSI+P+ENE+++EAFL+RHPEF DPA G +P F +K +G + P
Sbjct: 373 LAENGTLLYATCSIEPKENEQQIEAFLIRHPEFMRDPASGALPEPFASKAVPNGTLLTLP 432
Query: 512 IKHS-LDGAFAARLVR 526
+H DG FA RL +
Sbjct: 433 GEHEGFDGGFAQRLKK 448
>gi|282850140|ref|ZP_06259519.1| ribosomal RNA small subunit methyltransferase B [Veillonella
parvula ATCC 17745]
gi|294793653|ref|ZP_06758790.1| ribosomal RNA small subunit methyltransferase B [Veillonella sp.
3_1_44]
gi|416998935|ref|ZP_11939604.1| ribosomal RNA small subunit methyltransferase B [Veillonella
parvula ACS-068-V-Sch12]
gi|282579633|gb|EFB85037.1| ribosomal RNA small subunit methyltransferase B [Veillonella
parvula ATCC 17745]
gi|294455223|gb|EFG23595.1| ribosomal RNA small subunit methyltransferase B [Veillonella sp.
3_1_44]
gi|333977088|gb|EGL77947.1| ribosomal RNA small subunit methyltransferase B [Veillonella
parvula ACS-068-V-Sch12]
Length = 451
Score = 253 bits (645), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 151/421 (35%), Positives = 243/421 (57%), Gaps = 15/421 (3%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L D D R T++V G IR + YLD +I ++ + ++++ILR+G Y+I+ +D
Sbjct: 43 LSDLDRRFFTELVYGVIRRKNYLDAIIVHFA--KRPLKKLSSMVVEILRLGIYQIIYMDK 100
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A V+E+V+LAK R G VN +LR + L++++S+ + +L +++A ++
Sbjct: 101 VPESAAVNESVKLAKKLTR-GLSGFVNAVLRSV--LRESDSISIGELA---KSEAEEISF 154
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
IY+ P+W+V W K +G+++ + L W N P + R N+ K V+ D + +L L V
Sbjct: 155 IYNQPLWLVNLWIKEMGKDKTVDLCSWFNEQPRLTARINTVK-VSIEDCLKELEDLDWIV 213
Query: 286 PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAA 345
E ++ E + + ++ +A + EG D+++ LV VVDPQPG+ I+DCCAA
Sbjct: 214 --EQDTYIPEVVYIDGHQGHLEKAKPVLEGHITFMDKASMLVAHVVDPQPGELILDCCAA 271
Query: 346 PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTV 405
PGGK+++MAS ++ G + + DI +L ++N+ A+ V S+I T D R DN
Sbjct: 272 PGGKSMHMASLMNNTGAIMSCDIYDHKLELINQNAERLGV-SIISTKLQDGRYLPDNWKE 330
Query: 406 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465
+ D+VL+DAPCSGLG+L K+ D+RW + + EL LQ E+L+ AS +VK G LVYST
Sbjct: 331 QFDRVLVDAPCSGLGILQKKLDMRWRKTESLLIELPPLQLEILEKASEMVKVNGYLVYST 390
Query: 466 CSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARLV 525
C+++ ENE + FL H F IDP + G + P + +DG F AR+
Sbjct: 391 CTMNSGENEAVLNKFLAIHKNFIIDPVSYKGAPQAID--GMITTYPPRDHMDGFFMARMK 448
Query: 526 R 526
R
Sbjct: 449 R 449
>gi|218439986|ref|YP_002378315.1| sun protein [Cyanothece sp. PCC 7424]
gi|218172714|gb|ACK71447.1| sun protein [Cyanothece sp. PCC 7424]
Length = 452
Score = 253 bits (645), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 159/432 (36%), Positives = 230/432 (53%), Gaps = 17/432 (3%)
Query: 101 GFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYE 160
G + DL + D LVT++V G +R +R LD +I L K + P L IL IG Y+
Sbjct: 33 GIKRADLGNLDRGLVTELVYGIVRRQRTLDEIISQL--GTKKANQQPPDLRLILHIGLYQ 90
Query: 161 IVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQ 219
+ LD +PP A V+ +V LAK +VNGILR+ +K+ PL K +
Sbjct: 91 LRYLDQIPPSAAVNTSVELAKKNKLGKLSGVVNGILRQYDRIKEQGKDPL-KFPSDP--- 146
Query: 220 ARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTR--ADLVMQ 277
L ++S P W+++ W GQE+ +L W N +R N K A +
Sbjct: 147 VNHLGVLHSFPNWIIQLWLDEFGQEQTEQLCEWFNQPAMIDIRVNLLKTTVEKVASIFSD 206
Query: 278 LNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQ 337
+ + +PH L + +R+ G +++ Q +EG VQD SA LV ++DPQP +
Sbjct: 207 VGVKVKPIPH-----LPQSLRLIGGTRSIQQLPGFEEGWWTVQDSSAQLVTHLLDPQPDE 261
Query: 338 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR 397
I+D CAAPGGKT ++A + +G ++A D RLR + + A+ Q+NS IR D R
Sbjct: 262 IIIDACAAPGGKTTHIAQLMGDRGTIWACDRVPSRLRKVQQNAERLQLNS-IRICEGDSR 320
Query: 398 TFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKP 457
D+VLLDAPCSGLG L KR D+RW + E + EL LQ ELL+ + VKP
Sbjct: 321 HLTQFRET-ADRVLLDAPCSGLGTLHKRPDIRWRQTPEKIAELSQLQTELLEETATWVKP 379
Query: 458 GGVLVYSTCSIDPEENEERVEAFLLRHPEFSID-PADGLVPSDFVTKHGFFFSDPIKHSL 516
G+LVY+TC+++P ENE + AFL RHP + I P+ + F T G+ P +H +
Sbjct: 380 KGILVYATCTLNPLENERVIAAFLDRHPSWHIQTPSSDNTVAAFATPSGWIKVLPHQHQM 439
Query: 517 DGAFAARLVRAF 528
DG F +LV+
Sbjct: 440 DGFFMVKLVKGL 451
>gi|403378883|ref|ZP_10920940.1| 16S rRNA methyltransferase B [Paenibacillus sp. JC66]
Length = 457
Score = 253 bits (645), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 160/441 (36%), Positives = 244/441 (55%), Gaps = 37/441 (8%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
+ L+ D T++V GT++ + +D+ + K ++ +EP + +LRI FY++
Sbjct: 39 LKQSGLERLDAAFATELVYGTLQHQLTIDYYLQKFV--AKGWAKLEPWVRNLLRISFYQL 96
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKL----VLLKDNNSLPLPKLEGND 216
LD +P +A ++E V LAK G +VNG+LR + L+ +SLPL K
Sbjct: 97 YYLDRVPAHAAINEAVELAKRLGHRGISGMVNGVLRNVERQKASLEIPDSLPLVK----- 151
Query: 217 RAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVM 276
L+ YSHP WM+++W G+EE ++ NN P S+R + K TR L+
Sbjct: 152 -----RLSLTYSHPEWMIKQWLGSFGEEETARICQANNEPPHASIRVSPGK-RTREQLLA 205
Query: 277 QLNLLKLQV-PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQP 335
+L + P LS I V+ N+ +EGL +QDES+ LV VDP+P
Sbjct: 206 ELQEQGIDASPSPLSA---AGIVVRQA-GNMADTDGYREGLFTIQDESSMLVGEAVDPRP 261
Query: 336 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHAD 395
G S++DCCAAPGGKT +MA ++ QG+V DI++ + ++ + A+ + S I+T+ AD
Sbjct: 262 GMSVLDCCAAPGGKTTHMAELMNDQGMVIGCDIHEHKEALIRKQAQRLGLTS-IQTLAAD 320
Query: 396 LRTFADNSTVKC-DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLL 454
RT + + D+VLLDAPCSGLGV+ ++ DL+W + +++ L +Q ELL+A L
Sbjct: 321 ARTLSGRFPAESFDRVLLDAPCSGLGVIRRKPDLKWAKEPNEVKALSRIQAELLEAVHPL 380
Query: 455 VKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDF--------VTKHGF 506
VKPGG+LVYSTC+I EENEE++ FLL+HP+F++ PS F G
Sbjct: 381 VKPGGLLVYSTCTIAAEENEEQIRRFLLKHPQFTLSA----FPSAFSPVEQRTAAKSSGM 436
Query: 507 FFSDPIKHSLDGAFAARLVRA 527
P ++ DG F RL +A
Sbjct: 437 LQLLPHHYNSDGFFICRLQKA 457
>gi|365839611|ref|ZP_09380846.1| ribosomal RNA small subunit methyltransferase B [Anaeroglobus
geminatus F0357]
gi|364564452|gb|EHM42219.1| ribosomal RNA small subunit methyltransferase B [Anaeroglobus
geminatus F0357]
Length = 443
Score = 252 bits (644), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 162/458 (35%), Positives = 249/458 (54%), Gaps = 27/458 (5%)
Query: 75 GAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLIC 134
AF LL G N + V +T+ + ++ DDRD R T++V GT+R YLDH+I
Sbjct: 8 AAFHSLLAVCKDGGYSNII--VSKTI--QKQNFDDRDRRFYTELVYGTLRTLNYLDHIIS 63
Query: 135 LLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNG 193
+ + ++P+ L ILR G Y++ +D +PP A +E V+ A+ G VN
Sbjct: 64 TV--STRDIKKLDPVCLAILRCGLYQLFFMDKVPPSAACNEAVKTARRFGNAGMAKFVNA 121
Query: 194 ILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWN 253
+LR + K+ ++P P + L+ Y P W+VR+W K G+EE L +
Sbjct: 122 LLRNSLRKKETFTVPTPTEDA-----ILHLSLTYHQPAWLVRKWVKDFGREETTALCRYF 176
Query: 254 NSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDE--FIRVKTGLQNVIQAGL 311
+ P +R N+ + A + + + VP +LH E ++ G++ + +
Sbjct: 177 DRVPDLCIRTNTTRTTREALMTL---FTQKGVPCRCALHAPEGIYLEKNPGIRTLTE--- 230
Query: 312 LKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQG-LVYAIDINK 370
+ GL +QDE + LV VV PQ G+ I D CAAPGGKT ++A+ L G+G LVY DI +
Sbjct: 231 IAGGLGMIQDEPSQLVAHVVAPQAGEVIFDVCAAPGGKTTHLAA-LGGRGCLVYGFDIYE 289
Query: 371 GRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRW 430
+L+++ E A++ + + IRT+ D K D+VL+DAPCSGLG+L ++ DLRW
Sbjct: 290 HKLKLIKENARMLGLEN-IRTVLQDAVLLGRKYAAKADRVLVDAPCSGLGILRRKPDLRW 348
Query: 431 NRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSID 490
+R ED++ L Q +LL++A+ VKPGG+LVYSTC+I+ EEN V++FL H EF
Sbjct: 349 RKRPEDLKALPPFQRQLLESAAKCVKPGGILVYSTCTINEEENGAVVDSFLAAHAEFKAV 408
Query: 491 P-ADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARLVRA 527
P D L F + P + LDG F A++ +A
Sbjct: 409 PVGDSL---GFRQDTPYLCILPQRDGLDGFFIAKMQKA 443
>gi|385808959|ref|YP_005845355.1| ribosomal RNA small subunit methyltransferase B [Ignavibacterium
album JCM 16511]
gi|383801007|gb|AFH48087.1| Ribosomal RNA small subunit methyltransferase B [Ignavibacterium
album JCM 16511]
Length = 482
Score = 252 bits (643), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 156/439 (35%), Positives = 240/439 (54%), Gaps = 24/439 (5%)
Query: 94 GYVERTLG--FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLL 151
Y+E+ L R +L +D L+ +IV G RW LD ++ + FS P L
Sbjct: 60 AYLEKLLDHEMRNSELSGQDKALLYEIVHGVTRWMGRLDWILTGFYKGQ--FSKAIPNLR 117
Query: 152 QILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLP 210
LR+ Y+I+ LD +P +A V+E V K +L N ILR ++ K+ P P
Sbjct: 118 NGLRVALYQILFLDKIPDHAAVNEAVEFVKKLQGQKPADLTNAILRNIIRSKNAIRYPDP 177
Query: 211 KLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVT 270
+ LA YSHP WMV+R+ + G+EE KL++ NN P +LR N+ K T
Sbjct: 178 -----EEDLIGYLAAYYSHPSWMVKRYVERFGREETEKLLLANNEKPYLTLRVNAIK--T 230
Query: 271 RADLVMQLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAV 330
+ +L L + + + + EF +++ L N+ +G +QDES GL +
Sbjct: 231 NPEEFGKL-LDSVHLKYRRGKYNPEFFQLQN-LTNITAWEYFAKGYFNIQDESTGLACKL 288
Query: 331 VDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRIL---NETAKLHQVNS 387
+D +PG ++D CAAPGGKT ++A+ + +G + AID + RL++L NE L +
Sbjct: 289 LDVKPGMRVLDMCAAPGGKTAFLAALMQDKGEIVAIDKFEARLKLLRRNNERLGL----T 344
Query: 388 VIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDEL 447
+RT+ +D + D D+VL D PCSG G LSK+ D++W + + D+ ++ Q +L
Sbjct: 345 CVRTVESDALEYEDEP---FDRVLADVPCSGTGTLSKKPDIKWKKDIFDIRKMTETQLKL 401
Query: 448 LDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFF 507
L A+ LVK GG +VYSTCSI+ EEN + V+ FL +P+F ++ A G D V +HG
Sbjct: 402 LKKAASLVKVGGAVVYSTCSIEQEENIDVVKKFLEENPDFELESAKGKFSDDVVDEHGCI 461
Query: 508 FSDPIKHSLDGAFAARLVR 526
+ P +H +DGAF+A+LVR
Sbjct: 462 QTFPHRHQMDGAFSAKLVR 480
>gi|379722975|ref|YP_005315106.1| ribosomal RNA small subunit methyltransferase B [Paenibacillus
mucilaginosus 3016]
gi|378571647|gb|AFC31957.1| ribosomal RNA small subunit methyltransferase B [Paenibacillus
mucilaginosus 3016]
Length = 541
Score = 250 bits (639), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 149/384 (38%), Positives = 224/384 (58%), Gaps = 23/384 (5%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPY 169
D L T+IV GT++ +D+ + K S +EP + +LR+ FY++ LD +P +
Sbjct: 131 DAGLATEIVYGTLQRLNTIDYFLEGFV--SKGLSKLEPWVRSLLRLSFYQLYYLDRIPDH 188
Query: 170 AVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDN----NSLPLPKLEGNDRAQARALAT 225
AVV+E V +A+ G +VNG+LR ++ + LP PK +A
Sbjct: 189 AVVNEAVSMARRRGHQGISGMVNGVLRNVLRRRSELVLPEGLPAPKR----------IAL 238
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
SHP W+VRRW G+ A +L NN P SLRAN+RK ++R LV +L L+
Sbjct: 239 SASHPEWLVRRWIAQFGEAAAERLCEANNEPPRVSLRANTRK-LSREALVERLRGEGLEA 297
Query: 286 PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAA 345
E S + V+ G N+ EGL ++QDES+ LV VDPQPG+ ++DCCAA
Sbjct: 298 --EPSPLAPAGVIVRGG-GNMALTQDYAEGLYSIQDESSMLVAEWVDPQPGERVLDCCAA 354
Query: 346 PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTV 405
PGGKT ++A + G+G + A D+++ + ++ E A + + I T+ AD R ++
Sbjct: 355 PGGKTTHLAEKMQGRGEIVACDVHEHKHGLIREQA-VRLGHESITTLTADARRLREHYAP 413
Query: 406 KC-DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464
+ D++LLDAPCSGLGV+ ++ D++W + ++ E+ +Q ELL+A L+KPGGVLVYS
Sbjct: 414 ESFDRILLDAPCSGLGVIRRKPDMKWTKTEAELGEICSIQQELLEAVHGLLKPGGVLVYS 473
Query: 465 TCSIDPEENEERVEAFLLRHPEFS 488
TC+++P EN E V AFL RHPEF+
Sbjct: 474 TCTVEPAENGEAVRAFLGRHPEFT 497
>gi|427405969|ref|ZP_18896174.1| ribosomal RNA small subunit methyltransferase B [Selenomonas sp.
F0473]
gi|425708810|gb|EKU71849.1| ribosomal RNA small subunit methyltransferase B [Selenomonas sp.
F0473]
Length = 451
Score = 250 bits (638), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 162/445 (36%), Positives = 232/445 (52%), Gaps = 30/445 (6%)
Query: 91 NEMGYVERTL--GFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEP 148
NE Y L RT L DRD R +T++V GT++ LD++I D ++P
Sbjct: 27 NEGAYANVALVRAMRTARLTDRDRRFLTELVYGTVKAGDTLDYMIAQYLTD--GIERVQP 84
Query: 149 LLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSL 207
+ +ILRIG Y++ ++ +P A D V LAK R GA + VN +LR V +
Sbjct: 85 QIREILRIGIYQLFFMNKVPASAACDTAVELAKKYGRRGADSFVNAVLRTAVRTPGRAEI 144
Query: 208 PLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRK 267
P G D AR LA HP+WMV RW + G E +L NN+ SLR N+ +
Sbjct: 145 P----AGRD---ARLLALRTQHPLWMVERWIRAYGYERTEELCRCNNTSAPLSLRVNTLR 197
Query: 268 GVTRADLVMQLNLLKLQ-VPHELSLHLDEFIRVKTGLQNVIQAGL-----LKEGLCAVQD 321
TR L+ QL + VP E RV G+ GL L+EGLC VQD
Sbjct: 198 -TTRDALLAQLWAAGVTAVPSE---------RVPDGIVVTGHGGLDALTPLREGLCQVQD 247
Query: 322 ESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAK 381
ES+ LV V+ PG +++D CAAPGGK ++A + +G + A DI +G++ + AK
Sbjct: 248 ESSMLVAHVLGAAPGMTVIDACAAPGGKATHIAQLMENRGHIRAFDIYEGKISRIENNAK 307
Query: 382 LHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELK 441
++ +I T D R D+VL+DAPCSG GVL ++ D RW R+ +++ L
Sbjct: 308 RLGID-IIETAVRDAREIGVRFAGTADRVLVDAPCSGFGVLRRKPDARWRRKRAELKNLP 366
Query: 442 ILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFV 501
LQ E+L++A+ VKPGG LVYSTC+++ +EN+ V FL HPEF++ +P +
Sbjct: 367 KLQREILESAAAAVKPGGALVYSTCTMEEKENDRVVAHFLEAHPEFTLAETGAFLPCEKR 426
Query: 502 TKHGFFFSDPIKHSLDGAFAARLVR 526
+ P + DG F AR+ R
Sbjct: 427 PERTVRIC-PTVNGPDGFFIARMER 450
>gi|430750393|ref|YP_007213301.1| ribosomal RNA small subunit methyltransferase RsmB [Thermobacillus
composti KWC4]
gi|430734358|gb|AGA58303.1| ribosomal RNA small subunit methyltransferase RsmB [Thermobacillus
composti KWC4]
Length = 459
Score = 250 bits (638), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 159/426 (37%), Positives = 238/426 (55%), Gaps = 33/426 (7%)
Query: 68 LMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRR 127
L+R++ GA++++ + RTL R+ L D L T++V GTI+ R
Sbjct: 17 LLRVEREGAYSNI--------------ELNRTL--RSAGLSRTDTGLATELVYGTIQRRL 60
Query: 128 YLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPG 186
LD+ + + ++P +L +LR+ Y++V LD +PP+A V E V++AK PG
Sbjct: 61 TLDYWLARFV--ARGLDKLQPWVLTLLRMSLYQLVYLDRVPPHAAVGEAVKIAKKRGHPG 118
Query: 187 AGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEA 246
+LVNG+LR L +D +LP +D AR L+ +S P WM RW + G+E A
Sbjct: 119 VVSLVNGVLRSLAGCRDELTLP------DDPDPARRLSLKHSFPEWMAARWIESYGEETA 172
Query: 247 IKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQ-VPHELSLHLDEFIRVKTGLQN 305
K+M N P S+R N +G R+ L LK + +LSL I ++ G N
Sbjct: 173 DKIMAALNERPKTSIRVNRLRGGRRS----VLERLKAEGYDAKLSLITQAGIVIRRG-GN 227
Query: 306 VIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYA 365
+ ++G VQDE+A LV DP+PG ++DCCAAPGGK+ ++A + G+V A
Sbjct: 228 LAGTDGYRDGEWTVQDEAAMLVAEACDPEPGMRVLDCCAAPGGKSTHLAELMGDVGVVLA 287
Query: 366 IDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKC-DKVLLDAPCSGLGVLSK 424
DI+ + R++ E A+ + SV RT D + D VLLDAPCSG GV+ +
Sbjct: 288 NDIHPHKERLIVEQAQRLGLTSV-RTSVCDAAELPRRVGAESMDIVLLDAPCSGFGVIRR 346
Query: 425 RADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRH 484
+ ++RW ++ ED++E+ +Q LL AAS LVKPGG+LVYSTC+ +P ENEE++ FL H
Sbjct: 347 KPEIRWTKKPEDIDEIAAVQHRLLAAASALVKPGGLLVYSTCTFEPRENEEQIAKFLASH 406
Query: 485 PEFSID 490
EF+ D
Sbjct: 407 SEFAPD 412
>gi|209524134|ref|ZP_03272685.1| sun protein [Arthrospira maxima CS-328]
gi|376004062|ref|ZP_09781832.1| Ribosomal RNA small subunit methyltransferase B (rRNA
(cytosine-C(5)-)-methyltransferase) [Arthrospira sp. PCC
8005]
gi|423066085|ref|ZP_17054875.1| sun protein [Arthrospira platensis C1]
gi|209495509|gb|EDZ95813.1| sun protein [Arthrospira maxima CS-328]
gi|375327556|emb|CCE17585.1| Ribosomal RNA small subunit methyltransferase B (rRNA
(cytosine-C(5)-)-methyltransferase) [Arthrospira sp. PCC
8005]
gi|406712424|gb|EKD07610.1| sun protein [Arthrospira platensis C1]
Length = 458
Score = 250 bits (638), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 175/470 (37%), Positives = 250/470 (53%), Gaps = 36/470 (7%)
Query: 61 RAVSAVRLMRIQFGGAFADL-LNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIV 119
R ++ V L IQ GAFADL L++K R DL D D RL T++V
Sbjct: 6 RQLAFVTLRDIQRRGAFADLVLDEK-----------------LRQADLKDADRRLGTELV 48
Query: 120 GGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI-VKLDMPPYAVVDENVRL 178
G R RR LD +I L +K P L IL +G Y++ ++PP A V+ V L
Sbjct: 49 YGCTRRRRTLDAIIDRLA--KKPAHQQPPDLRIILHLGLYQLSFSTNIPPSAAVNTTVDL 106
Query: 179 AKVALRPGAGNLVNGILRK-LVLLKDNNSL-PLPKLEGNDRAQARALATIYSHPVWMVRR 236
KV G G VNG+LR+ L LL+ NSL + +L N ++ L ++S P M++
Sbjct: 107 TKVNHLSGLGGFVNGLLRQYLRLLEAGNSLESILQLPENPVSR---LGILHSFPDSMIKF 163
Query: 237 WTKYLGQEEAIKLMVWNNSDPSFSLRAN--SRKGVTRADLVMQLNLLKLQVPHELSLHLD 294
W + LG+ + +L W N PS LR N S T Q ++ +P L
Sbjct: 164 WLEELGESQTEQLCDWFNQSPSLDLRINPLSTTLETVETAFQQREIIGSPIPK-----LP 218
Query: 295 EFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMA 354
+ R+ G+ + +G VQD SA LV VVDPQPG+ I+D CAAPGGKT ++A
Sbjct: 219 QGWRLSYGVGAIANLPGYDQGWWTVQDASAQLVGYVVDPQPGEIIIDACAAPGGKTTHIA 278
Query: 355 SCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDA 414
+ G + AID + GRL+ L + K ++ S+ + D R F + D+VLLDA
Sbjct: 279 ELMGDNGKIIAIDRSPGRLKPLQQNIKRLKLRSIQVEV-GDSRHFPQYNNT-ADRVLLDA 336
Query: 415 PCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENE 474
PCSG G L +R+D RW + + + +L LQ ELL+ S VKPGGVLVY+TC++ P+ENE
Sbjct: 337 PCSGGGTLHRRSDARWRQTPDQIRQLSQLQAELLEMVSHWVKPGGVLVYATCTLHPQENE 396
Query: 475 ERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARL 524
+ +FL RHP + ++ + +P + TK G+ P +H +DG F A+L
Sbjct: 397 WAIASFLSRHPTWRVEVPNIDLPVE-PTKEGWLKIWPHRHQMDGFFIAKL 445
>gi|409993041|ref|ZP_11276199.1| 16S rRNA methyltransferase B [Arthrospira platensis str. Paraca]
gi|291566504|dbj|BAI88776.1| ribosomal RNA small subunit methyltransferase B [Arthrospira
platensis NIES-39]
gi|409936102|gb|EKN77608.1| 16S rRNA methyltransferase B [Arthrospira platensis str. Paraca]
Length = 447
Score = 249 bits (636), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 173/470 (36%), Positives = 252/470 (53%), Gaps = 36/470 (7%)
Query: 61 RAVSAVRLMRIQFGGAFADL-LNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIV 119
R ++ V L IQ GAFAD+ L++K R DL D D RL T++V
Sbjct: 6 RQLAFVTLRDIQRRGAFADIVLDEK-----------------LRQADLKDADRRLGTELV 48
Query: 120 GGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI-VKLDMPPYAVVDENVRL 178
G R RR LD +I L +K P L IL +G Y++ ++PP A V+ V L
Sbjct: 49 YGCTRRRRTLDAIIDRLA--KKPAHQQPPDLRIILHLGLYQLCFSSNIPPSAAVNTTVDL 106
Query: 179 AKVALRPGAGNLVNGILRK-LVLLKDNNSL-PLPKLEGNDRAQARALATIYSHPVWMVRR 236
KV G G VNG+LR+ L L++ NSL + +L N ++ L ++S P WM++
Sbjct: 107 TKVNNLSGLGGFVNGLLRQYLRLVEAGNSLESILQLPENPVSR---LGILHSFPDWMIKF 163
Query: 237 WTKYLGQEEAIKLMVWNNSDPSFSLRAN--SRKGVTRADLVMQLNLLKLQVPHELSLHLD 294
W + LG+ + +L W N PS LR N S T Q ++ +P L
Sbjct: 164 WLEELGESQTQQLCDWFNQSPSLDLRINPLSTTLETVETAFQQQEIIGSPLPK-----LP 218
Query: 295 EFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMA 354
+ R+ +G+ + +G VQD SA LV +VDPQPG+ I+D CAAPGGKT ++A
Sbjct: 219 QGWRLSSGVGAIRNLPGYDQGWWTVQDASAQLVGYIVDPQPGEIIIDACAAPGGKTTHIA 278
Query: 355 SCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDA 414
+ G V AID + GRL+ L + ++ S+ + D R F + + D+VLLDA
Sbjct: 279 ELMGDNGKVIAIDRSPGRLKPLKQNINRLKLRSIQVEV-GDSRHFPQYNNM-ADRVLLDA 336
Query: 415 PCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENE 474
PCSG G L +R+D RW + + + +L LQ ELL+ S VKPGGVLVY+TC++ P+ENE
Sbjct: 337 PCSGGGTLHRRSDSRWRQTPDQIRQLSQLQAELLEMVSHWVKPGGVLVYATCTLYPQENE 396
Query: 475 ERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARL 524
+ +FL RHP + ++ + +P + TK G+ P +H +DG F A+L
Sbjct: 397 WAIASFLSRHPSWRVEVPNLDLPVE-PTKEGWLKIWPHRHQMDGFFIAKL 445
>gi|386725760|ref|YP_006192086.1| 16S rRNA methyltransferase B [Paenibacillus mucilaginosus K02]
gi|384092885|gb|AFH64321.1| 16S rRNA methyltransferase B [Paenibacillus mucilaginosus K02]
Length = 505
Score = 249 bits (636), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 152/380 (40%), Positives = 228/380 (60%), Gaps = 15/380 (3%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPY 169
D L T+IV GT++ +D+ + K S +EP + +LR+ FY++ LD +P +
Sbjct: 95 DAGLATEIVYGTLQRLNTIDYFLEGFV--SKGLSKLEPWVRSLLRLSFYQLYYLDRIPDH 152
Query: 170 AVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSH 229
AVV+E V +A+ G +VNG+LR + L+ + L LP EG + AL+ SH
Sbjct: 153 AVVNEAVSMARRRGHQGISGMVNGVLRNV--LRRRSELVLP--EGLPAPKRIALSA--SH 206
Query: 230 PVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHEL 289
P W+VRRW G+ A +L NN P SLRAN+RK ++R LV +L L+ E
Sbjct: 207 PEWLVRRWIAQFGEAAAERLCEANNEPPRVSLRANTRK-LSREALVERLRGEGLEA--EP 263
Query: 290 SLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGK 349
S + V+ G N+ EGL ++QDES+ LV VDPQPG+ ++DCCAAPGGK
Sbjct: 264 SPLAPAGVIVRGG-GNMALTQDYAEGLYSIQDESSMLVAEWVDPQPGERVLDCCAAPGGK 322
Query: 350 TLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKC-D 408
T ++A + G+G + A D+++ + ++ E A + + I T+ AD R ++ + D
Sbjct: 323 TTHLAEKMQGRGEIVACDVHEHKHGLIREQA-VRLGHESITTLTADARRLREHYAPESFD 381
Query: 409 KVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSI 468
++LLDAPCSGLGV+ ++ D++W + ++ E+ +Q ELL+A L+KPGGVLVYSTC++
Sbjct: 382 RILLDAPCSGLGVIRRKPDMKWTKTEAELGEICSIQQELLEAVHGLLKPGGVLVYSTCTV 441
Query: 469 DPEENEERVEAFLLRHPEFS 488
+P EN E V AFL RHPEF+
Sbjct: 442 EPAENGEAVRAFLGRHPEFT 461
>gi|428221462|ref|YP_007105632.1| ribosomal RNA small subunit methyltransferase RsmB [Synechococcus
sp. PCC 7502]
gi|427994802|gb|AFY73497.1| ribosomal RNA small subunit methyltransferase RsmB [Synechococcus
sp. PCC 7502]
Length = 441
Score = 249 bits (635), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 158/422 (37%), Positives = 227/422 (53%), Gaps = 17/422 (4%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD 165
D+ D LVT++V G R +R LD LI K + P L IL IG Y+IV LD
Sbjct: 35 DISKSDRSLVTELVYGITRRQRTLDALIAEFT--GKPTAKQPPDLRLILHIGIYQIVFLD 92
Query: 166 -MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P A V+ V LAK G LVN +LRK+ ++ ++L L
Sbjct: 93 QIPNSAAVNTTVDLAKSVKLGGLSGLVNAVLRKICREQEQHTL---------FNNIHDLG 143
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQ 284
T++S P W++ W + G+EE +L W N P LR N K +T A+L+ +++
Sbjct: 144 TLHSFPDWLIELWIEQFGREETDQLCQWFNQSPHIDLRTNILK-ITTAELITLFEATEIK 202
Query: 285 VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 344
V L L + +R+ TG N+ EGL VQD SA L ++DPQP ++I+D CA
Sbjct: 203 V-QSLPL-IPNALRLNTGSGNIPSLVGFTEGLWTVQDASAQLTGLILDPQPNETIIDACA 260
Query: 345 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNST 404
APGGKT ++A + QGL+YA D RL+ L + + S+++ D R FAD
Sbjct: 261 APGGKTTHIAELMGNQGLIYACDRTASRLQKLQQNCDRLGL-SIVQIRVGDSREFADFQN 319
Query: 405 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464
+ D+VLLD PCSGLG L + AD RW + E+ ++L ILQ ELL+ A+ VK GG+LVYS
Sbjct: 320 -QADRVLLDVPCSGLGTLHRHADARWRQNPEESKKLAILQTELLNQAATWVKNGGILVYS 378
Query: 465 TCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARL 524
TC+I P+ENE ++ FL HP + + + + H + P K ++DG F A+L
Sbjct: 379 TCTIHPDENEAVIKQFLATHPHWKLVTPNIAPQLQSDSSHPWLKILPHKSNMDGFFIAKL 438
Query: 525 VR 526
+
Sbjct: 439 QK 440
>gi|428315935|ref|YP_007113817.1| sun protein [Oscillatoria nigro-viridis PCC 7112]
gi|428239615|gb|AFZ05401.1| sun protein [Oscillatoria nigro-viridis PCC 7112]
Length = 446
Score = 248 bits (633), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 167/468 (35%), Positives = 247/468 (52%), Gaps = 33/468 (7%)
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVG 120
R ++ + L + GAFAD ++R F L+D D RLVT++V
Sbjct: 5 RQIAFLALREVHRRGAFAD--------------AALDR--AFSNSQLNDLDRRLVTELVY 48
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLA 179
G++R R +D +I L K S P L IL +G Y++ L+ +PP A V+ V+LA
Sbjct: 49 GSVRRMRSIDFIIDKLA--TKKSSQQPPELRTILHLGLYQLEYLNQIPPSAAVNTTVQLA 106
Query: 180 KVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTK 239
K G + VNG+LR+ + L DN+ PL N ++ L ++S P W+V+ W +
Sbjct: 107 KENGFSGLSSFVNGLLRQYIRLTDNDLNPL--TVTNYKSPVERLGILHSFPEWLVKLWIE 164
Query: 240 YLGQEEAIKLMVWNNSDPSFSLRANSRKG-VTRADLVMQL-NLLKLQVPHELSLHLDEFI 297
+G+ E +L W N P+ LR N K + + + Q N+ ++PH L + +
Sbjct: 165 QIGETETEQLCEWFNQSPTIDLRINPLKSSIAQIEAAFQTHNISTSRIPH-----LPQAL 219
Query: 298 RVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCL 357
R+ + + EG +QD SA LV ++ PQPG++I+D CAAPGGKT + A +
Sbjct: 220 RLNGSIGAIQNLPGYSEGWWTIQDSSAQLVTHLLAPQPGETIIDACAAPGGKTTHSAELM 279
Query: 358 SGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIH-ADLRTFADNSTVKCDKVLLDAPC 416
G +YA D RL+ L E A Q+ S+ IH D R F + + D+VLLDAPC
Sbjct: 280 QDTGTIYACDKTASRLKKLKENADRLQMKSI--KIHTGDSRHFPEFVNL-ADRVLLDAPC 336
Query: 417 SGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEER 476
SGLG L +RAD RW E++++ LQ ELL A+ VK GGVLVY+TC+I P ENE
Sbjct: 337 SGLGTLHRRADARWRHTPENIQQQSQLQSELLANAATFVKSGGVLVYATCTIHPLENETV 396
Query: 477 VEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARL 524
+ +FL +P + I+P +P + G+ P +H +DG F RL
Sbjct: 397 IRSFLDSNPHWQIEPPTIDLPVQ-PSPEGWVKVWPHRHHMDGFFMVRL 443
>gi|294791792|ref|ZP_06756940.1| ribosomal RNA small subunit methyltransferase B [Veillonella sp.
6_1_27]
gi|294457022|gb|EFG25384.1| ribosomal RNA small subunit methyltransferase B [Veillonella sp.
6_1_27]
Length = 451
Score = 248 bits (633), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 150/421 (35%), Positives = 244/421 (57%), Gaps = 15/421 (3%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L D D R T++V G IR + YLD +I ++ + ++++ILR+G Y+I+ +D
Sbjct: 43 LSDLDRRFFTELVYGVIRRKNYLDAIIVHFA--KRPLKKLSSMVVEILRLGIYQIIYMDK 100
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A V+E+V+LAK R G VN +LR + L++++S+ + +L +++A ++
Sbjct: 101 VPESAAVNESVKLAKKLTR-GLSGFVNAVLRSV--LRESDSISIGELA---KSEAEEISF 154
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
IY+ P+W+V W K +G+++ + L W N P + R N+ K V+ D + +L L V
Sbjct: 155 IYNQPLWLVNLWIKEMGKDKTVDLCSWFNEQPRLTARINTVK-VSIEDCLKELEDLDWIV 213
Query: 286 PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAA 345
E ++ E + + ++ +A + EG D+++ LV VVDPQPG+ I+DCCAA
Sbjct: 214 --EQDTYIPEVVYIDGHQGHLEKAKPVLEGHITFMDKASMLVAHVVDPQPGERILDCCAA 271
Query: 346 PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTV 405
PGGK+++MAS ++ G + + DI +L ++N+ A+ V S+I T D R DN
Sbjct: 272 PGGKSMHMASLMNNTGAIMSCDIYDHKLELINQNAERLGV-SIISTKLQDGRYLPDNWKE 330
Query: 406 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465
+ D+VL+DAPCSGLG+L K+ D+RW + + +L +LQ E+L+ AS +VK G LVYST
Sbjct: 331 QFDRVLVDAPCSGLGILQKKLDMRWRKTESLLIKLPLLQLEILEKASEMVKVNGYLVYST 390
Query: 466 CSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARLV 525
C+++ ENE + FL H F IDP + G + P + +DG F AR+
Sbjct: 391 CTMNSGENEAVLNKFLAIHKNFIIDPVSYKGAPQAID--GMITTYPPRDHMDGFFMARMK 448
Query: 526 R 526
R
Sbjct: 449 R 449
>gi|428776022|ref|YP_007167809.1| sun protein [Halothece sp. PCC 7418]
gi|428690301|gb|AFZ43595.1| sun protein [Halothece sp. PCC 7418]
Length = 447
Score = 248 bits (633), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 158/439 (35%), Positives = 235/439 (53%), Gaps = 19/439 (4%)
Query: 94 GYVERTL--GFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLL 151
Y E L F L ++ LV+++V G +R +R LD LI K S P L
Sbjct: 22 AYAEVALDRAFSQATLSPQNYGLVSELVYGIVRRQRTLDALIDQFA--SKPASEQPPKLR 79
Query: 152 QILRIGFYEIVKL-DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLL--KDNNSLP 208
IL++GFY++ L +PP A VD +V LAK +VNGILR+ + K+ + L
Sbjct: 80 LILQLGFYQLRYLTQVPPSAAVDTSVELAKSNHLGKLSRVVNGILRQYIRQREKEGDPLH 139
Query: 209 LPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKG 268
LP ND Q L +S P W+++ W G+ A +L +W N P+ LR N K
Sbjct: 140 LP----NDPIQK--LGIQHSFPDWLIQLWCDEFGEATADQLGIWFNQSPNLDLRINPLKT 193
Query: 269 VTRADLVMQLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVV 328
A ++ L + + + + +R+ +G+ + Q EG VQD SA LV
Sbjct: 194 TPEA---LEKALTEANIAYSPLPFVPLGLRLSSGVGKIEQLPGFTEGWWTVQDFSAQLVS 250
Query: 329 AVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSV 388
++ PQ G++I+D CAAPGGKT ++A + +G ++A D + RL+ + A+ Q+ S
Sbjct: 251 YLLSPQAGETIIDACAAPGGKTTHIAELMGDEGKIWACDRAESRLKKVTNNAQRLQLKS- 309
Query: 389 IRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELL 448
I T D R + D+VL+DAPCSGLG L +R DLRW + E++ +L LQ E+L
Sbjct: 310 IETRVGDARELSQFQNT-ADRVLIDAPCSGLGTLHRRTDLRWRQTPENLVQLAKLQQEIL 368
Query: 449 DAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSID-PADGLVPSDFVTKHGFF 507
A + VKP G+LVY+TC+I+P ENE+ ++AFL HPE+ I+ P + V+ G+
Sbjct: 369 TATATWVKPNGILVYATCTINPLENEDVIQAFLSHHPEWKIEAPPETFPAQSLVSSSGWL 428
Query: 508 FSDPIKHSLDGAFAARLVR 526
P +H+ DG F RL R
Sbjct: 429 KVIPTEHNSDGFFMVRLRR 447
>gi|253575778|ref|ZP_04853113.1| ribosomal RNA small subunit methyltransferase B [Paenibacillus sp.
oral taxon 786 str. D14]
gi|251844821|gb|EES72834.1| ribosomal RNA small subunit methyltransferase B [Paenibacillus sp.
oral taxon 786 str. D14]
Length = 506
Score = 248 bits (632), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 162/448 (36%), Positives = 248/448 (55%), Gaps = 33/448 (7%)
Query: 45 SPSRRTQNLNLEVSPHRAVSAVRLMRIQFGGAFADLL-NKKGKGSGDNEMGYVERTLGFR 103
+PS + N + R+V+ L ++ GA+++LL N + SG
Sbjct: 40 TPSSCGRGRNQAAASARSVALQVLTAVEQEGAYSNLLLNGALQKSG-------------- 85
Query: 104 TKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVK 163
L D L T++V GTI+ +D+ + K + + P + +LR+ FY++
Sbjct: 86 ---LTGPDAGLATELVYGTIQRLNTIDYFLEQFV--TKGLAKLAPWVRNLLRLSFYQLQY 140
Query: 164 LD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARA 222
LD +PP+A V+E V LAK G +VNG+LR ++ K+ LP EG D Q A
Sbjct: 141 LDRIPPHAAVNEAVNLAKRKGHQGISGMVNGVLRNVLRRKEELRLP----EGLDPVQRIA 196
Query: 223 LATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLK 282
L +SHP WMV W + G+ A + NN PS S+R N R +R +++ +
Sbjct: 197 LE--HSHPEWMVALWIQQYGESAAEAICRANNEPPSVSVRVN-RTKASRDEVLRLMEEQG 253
Query: 283 LQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 342
L+ S + I V +G N+ +EGL +VQDES+ LV +DPQPG +++DC
Sbjct: 254 LRA--SASPISPDGIVVHSG-GNMALTSWYREGLISVQDESSMLVAEALDPQPGMNVLDC 310
Query: 343 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN 402
CAAPGGKT ++A + G+G V A DI+ + +++ + AK +++V T+ D A+
Sbjct: 311 CAAPGGKTCHIAEIMEGRGRVLANDIHPHKAKLIEDHAKRLGLDNV-DTLSGDALQLAER 369
Query: 403 -STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVL 461
D++LLD PCSGLGV+ ++ DL+W ++ ED+ E+ +Q LLD+ S L+KPGG+L
Sbjct: 370 LKAASFDRILLDVPCSGLGVIRRKPDLKWAKKPEDVTEIAGVQRTLLDSVSGLLKPGGLL 429
Query: 462 VYSTCSIDPEENEERVEAFLLRHPEFSI 489
VYSTC+I+P EN E V +FL RHPEF +
Sbjct: 430 VYSTCTIEPRENAEMVASFLSRHPEFEL 457
>gi|337750137|ref|YP_004644299.1| ribosomal RNA small subunit methyltransferase B [Paenibacillus
mucilaginosus KNP414]
gi|336301326|gb|AEI44429.1| ribosomal RNA small subunit methyltransferase B [Paenibacillus
mucilaginosus KNP414]
Length = 485
Score = 247 bits (631), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 152/380 (40%), Positives = 227/380 (59%), Gaps = 15/380 (3%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPY 169
D L T+IV GT++ +D+ + K S +EP + +LR+ FY++ LD +P +
Sbjct: 75 DAGLATEIVYGTLQRLNTIDYFLEGFV--SKGLSKLEPWVRSLLRLSFYQLYYLDRIPDH 132
Query: 170 AVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSH 229
AVV+E V +A+ G +VNG+LR + L+ + L LP EG + AL+ SH
Sbjct: 133 AVVNEAVSMARRRGHQGISGMVNGVLRNV--LRRRSELVLP--EGLPAPKRIALSA--SH 186
Query: 230 PVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHEL 289
P W+VRRW G+ A +L NN P SLRAN+RK ++R LV +L L+ E
Sbjct: 187 PEWLVRRWIAQFGEAAAERLCEANNEPPRVSLRANTRK-LSREALVERLRGEGLEA--EP 243
Query: 290 SLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGK 349
S + V+ G N+ EGL ++QDES+ LV VDPQPG+ ++DCCAAPGGK
Sbjct: 244 SPLAPAGVIVRGG-GNMALTQDYAEGLYSIQDESSMLVAEWVDPQPGERVLDCCAAPGGK 302
Query: 350 TLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKC-D 408
T ++A + G+G + A D+++ + ++ E A S I T+ AD R ++ + D
Sbjct: 303 TTHLAEKMQGRGEIVACDVHEHKHGLIREQADRLGHES-ITTLTADARRLPEHYAPESFD 361
Query: 409 KVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSI 468
++LLDAPCSGLGV+ ++ D++W + ++ ++ +Q ELL+A L+KPGGVLVYSTC++
Sbjct: 362 RILLDAPCSGLGVIRRKPDMKWTKTEAELGDICSIQQELLEAVHGLLKPGGVLVYSTCTV 421
Query: 469 DPEENEERVEAFLLRHPEFS 488
+P EN E V AFL RHPEF+
Sbjct: 422 EPAENGEAVRAFLGRHPEFT 441
>gi|320530184|ref|ZP_08031254.1| ribosomal RNA small subunit methyltransferase B [Selenomonas
artemidis F0399]
gi|320137617|gb|EFW29529.1| ribosomal RNA small subunit methyltransferase B [Selenomonas
artemidis F0399]
Length = 451
Score = 247 bits (631), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 157/472 (33%), Positives = 242/472 (51%), Gaps = 32/472 (6%)
Query: 56 EVSPHRAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLV 115
++ P R ++ LM + GA+A+ V R L DRD R +
Sbjct: 10 KIDPVRELAMQVLMEVHRDGAYAN----------------VALVRAMRAAQLTDRDRRFL 53
Query: 116 TDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDE 174
T++V GT++ LD +I D K + ++P + +ILR+G Y+I +D +P A +
Sbjct: 54 TELVYGTVKAGDTLDDMIAKYLRDGK--ARIKPQIREILRLGIYQIFFMDKVPASAACNT 111
Query: 175 NVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMV 234
V LAK + GA + VN +LR V + ++P + AR LA HP WM
Sbjct: 112 AVELAKKHGKRGADSFVNAVLRAAVREPERAAIPAGR-------NARLLALREQHPFWMA 164
Query: 235 RRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLD 294
RW + G E A +L NN +LR N+ + + R L+ +L Q ++ D
Sbjct: 165 NRWVRLYGYERAEELCRCNNGSAPLALRVNTLR-IDREGLLKKLAAAGAQARPSATVP-D 222
Query: 295 EFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMA 354
+ G+ + + L+EGLC VQDES+ LV V+ PG +++D CAAPGGKT ++A
Sbjct: 223 GIVVTSHGMLDALAP--LREGLCQVQDESSMLVAHVLGAAPGMTVIDACAAPGGKTTHIA 280
Query: 355 SCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDA 414
+ +G +YA D+ +G++ + A+ ++ +I D R + D+VL+DA
Sbjct: 281 QRMENRGKIYAFDVYEGKIARIENNARRLGID-IIEPRLLDAREIGAHYAGTADRVLIDA 339
Query: 415 PCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENE 474
PCSG GVL ++ D RW R+ E++ L LQ E+L A+ V+PGG LVYSTC+++ ENE
Sbjct: 340 PCSGFGVLRRKPDARWRRKPEELGALPKLQQEILAGAAAAVRPGGALVYSTCTMETAENE 399
Query: 475 ERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARLVR 526
V+ FL HPEF ++ A +P T+ P + DG F AR+ R
Sbjct: 400 GVVQRFLELHPEFVLERAGAFLPVQ-QTEDAMVQIFPTEDGGDGFFIARMKR 450
>gi|428781149|ref|YP_007172935.1| ribosomal RNA small subunit methyltransferase RsmB
[Dactylococcopsis salina PCC 8305]
gi|428695428|gb|AFZ51578.1| ribosomal RNA small subunit methyltransferase RsmB
[Dactylococcopsis salina PCC 8305]
Length = 445
Score = 247 bits (630), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 154/430 (35%), Positives = 231/430 (53%), Gaps = 24/430 (5%)
Query: 101 GFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYE 160
F++ ++ V ++V G +R +R LD LI + P L IL+IG Y+
Sbjct: 31 AFQSSHFLPQNYGFVKELVSGIVRRQRTLDALISQFAKKPQ----QPPKLRLILQIGLYQ 86
Query: 161 IVKL-DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQ 219
+ L +PP A VD +V LAK +VNGILR+ + + + PL + +D +
Sbjct: 87 LRYLTQVPPSAAVDTSVELAKNNGLSKLSGVVNGILRQYIRQAETVADPL--ILPDDPIE 144
Query: 220 ARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRAN----SRKGVTRADLV 275
L +S P W+++ W GQE A KL W N P+ LR N S++ V +A +
Sbjct: 145 K--LGVKHSFPNWIIKLWRDEWGQETAEKLAAWFNQSPTIDLRINPLNVSKEAVEKAFME 202
Query: 276 MQLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQP 335
+N L +P+ L R+ + + N+ Q EG VQD SA LV +++PQP
Sbjct: 203 ANINYEFLSLPYGL--------RLTSRVGNIQQLPGFSEGWWTVQDFSAQLVSYLLNPQP 254
Query: 336 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHAD 395
G++I+D CAAPGGKT ++A + GL++A+D RL+ + A+ Q S I+T AD
Sbjct: 255 GETIIDACAAPGGKTTHIAELMGDDGLIWALDRASSRLKKVISNAERLQHKS-IKTCVAD 313
Query: 396 LRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLV 455
+R ++VL+DAPCSGLG L +R DLRW + E++ EL LQ E+L A+ V
Sbjct: 314 VREMKQFQQA-ANRVLVDAPCSGLGTLHRRTDLRWRQTPENLVELSQLQQEILTTAATWV 372
Query: 456 KPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSID-PADGLVPSDFVTKHGFFFSDPIKH 514
KP G LVY+TC+++P ENE+ ++ FL HP++ ID P D V+ G P +H
Sbjct: 373 KPKGTLVYATCTLNPLENEDVIQTFLSNHPQWEIDLPPDNFPSKSLVSASGGIKLIPTEH 432
Query: 515 SLDGAFAARL 524
+ DG F +L
Sbjct: 433 NSDGFFMVKL 442
>gi|261405800|ref|YP_003242041.1| sun protein [Paenibacillus sp. Y412MC10]
gi|261282263|gb|ACX64234.1| sun protein [Paenibacillus sp. Y412MC10]
Length = 442
Score = 246 bits (629), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 153/435 (35%), Positives = 237/435 (54%), Gaps = 27/435 (6%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
+ L D L T+++ GTI LD+ + + K ++P + +LRI Y+I
Sbjct: 22 LQKSSLAKSDAGLATELIYGTISRLNTLDYFLDKFVN--KGVRKLQPWVRALLRISLYQI 79
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
V LD +P +AVV E V LAK G +VNG+LR + L+ +L +P+ D A
Sbjct: 80 VYLDRIPDHAVVSEAVNLAKRRGHQGISGMVNGVLRNI--LRQKETLAIPE----DMTDA 133
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
+ ++ ++SHP W+V RW G E + NN P+ S+R N+ ++R D+
Sbjct: 134 QRISLLHSHPQWLVERWISQYGTEATEAICAANNEPPAVSVRVNTTM-ISRDDM------ 186
Query: 281 LKLQVPHELSLH---LDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQ 337
LKL H L + + V G N+ +EG+ ++QDES+ LV V P+PG
Sbjct: 187 LKLMGNHGLDASPSSVSPYGIVVKGAGNMALTDWYREGMISIQDESSMLVAEAVQPEPGM 246
Query: 338 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR 397
++DCCAAPGGK+ +M ++ +G + A DI+ + +++++ A ++S I + D
Sbjct: 247 RVLDCCAAPGGKSAHMGELMNDEGSIVANDIHAHKGKLISDQASRLGLDS-ISIVTGDAL 305
Query: 398 TFADN-STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVK 456
AD D++LLDAPCSGLGV+ ++ DL+W + ED+ E+ LQ LL++ S L++
Sbjct: 306 DLADRFEPASFDRILLDAPCSGLGVIRRKPDLKWGKSQEDIHEIAALQLRLLESVSTLLR 365
Query: 457 PGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGL-----VPSDFVTKHGFFFSDP 511
PGG+LVYSTC+I+P ENE V AFL H EF+I DGL + + + + G P
Sbjct: 366 PGGILVYSTCTIEPRENEGVVSAFLEGHSEFAI-AEDGLGALSRLGENSLARGGGIQILP 424
Query: 512 IKHSLDGAFAARLVR 526
+ DG + ARL R
Sbjct: 425 QHYHSDGFYIARLGR 439
>gi|329926565|ref|ZP_08280978.1| ribosomal RNA small subunit methyltransferase B [Paenibacillus sp.
HGF5]
gi|328939106|gb|EGG35469.1| ribosomal RNA small subunit methyltransferase B [Paenibacillus sp.
HGF5]
Length = 442
Score = 246 bits (628), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 152/435 (34%), Positives = 238/435 (54%), Gaps = 27/435 (6%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
+ L D L T+++ GTI LD+ + + K ++P + +LRI Y+I
Sbjct: 22 LQKSSLAKSDAGLATELIYGTISRLNTLDYFLDKFVN--KGVRKLQPWVRALLRISLYQI 79
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
V LD +P +AVV E V LAK G +VNG+LR + L+ +L +P+ D A
Sbjct: 80 VYLDRIPDHAVVSEAVNLAKRRGHQGISGMVNGVLRNI--LRQKETLAIPE----DMTDA 133
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
+ ++ ++SHP W+V RW G E A + NN P+ S+R N+ ++R D+
Sbjct: 134 QRISLLHSHPQWLVERWISQYGTEAAEAICAANNEPPAVSVRVNTTM-ISRDDM------ 186
Query: 281 LKLQVPHELSLH---LDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQ 337
LKL H L + + V G N+ ++G+ ++QDES+ LV V P+PG
Sbjct: 187 LKLMGSHGLDASPSSVSPYGIVVKGAGNMALTDWYRDGMISIQDESSMLVAEAVQPEPGM 246
Query: 338 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR 397
++DCCAAPGGK+ +M + +G + A DI+ + +++++ A ++S I + D
Sbjct: 247 RVLDCCAAPGGKSAHMGELMKDEGSIVANDIHAHKGKLISDQASRLGLDS-ISIVTGDAL 305
Query: 398 TFADN-STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVK 456
AD D++LLDAPCSGLGV+ ++ DL+W + ED+ E+ LQ LL++ S L++
Sbjct: 306 DLADRFEPASFDRILLDAPCSGLGVIRRKPDLKWGKSQEDIHEIAALQLRLLESVSTLLR 365
Query: 457 PGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGL-----VPSDFVTKHGFFFSDP 511
PGG+LVYSTC+I+P ENE + AFL H EF+I DGL + + +++ G P
Sbjct: 366 PGGILVYSTCTIEPMENEGVISAFLEGHSEFAI-AEDGLGALSRLGENSLSRGGGIQILP 424
Query: 512 IKHSLDGAFAARLVR 526
+ DG + ARL R
Sbjct: 425 QHYHSDGFYIARLGR 439
>gi|443478406|ref|ZP_21068164.1| sun protein [Pseudanabaena biceps PCC 7429]
gi|443016313|gb|ELS31003.1| sun protein [Pseudanabaena biceps PCC 7429]
Length = 450
Score = 246 bits (628), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 155/422 (36%), Positives = 221/422 (52%), Gaps = 25/422 (5%)
Query: 109 DRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MP 167
+ D RL+T++V G R ++ L + L +K + + P LL IL+IG Y++ LD +
Sbjct: 44 ESDRRLITELVYGCTRRQKTLQAV--LQNFSQKPIAKLPPDLLIILQIGVYQLCFLDRIK 101
Query: 168 PYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIY 227
A+V V L K G NG++R ++ K+ +G+ A A+ Y
Sbjct: 102 ASAIVHTTVELVKENKLAGLSGFANGVMRSILRAKE---------KGDILADISDPASFY 152
Query: 228 SHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRAN----SRKGVTRADLVMQLNLLKL 283
S+P W++ W K GQE + W N P LR N R V A + ++
Sbjct: 153 SYPEWLIDLWQKEFGQESIANICNWFNQTPHLDLRVNLLHAKRDQVLAA--FAEAGIVAE 210
Query: 284 QVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCC 343
+PH L + IRV G V Q KEG +VQD SA LV ++DPQP + +VD C
Sbjct: 211 PIPH-----LPDGIRVGQGAGEVSQLPKFKEGWWSVQDASAQLVTYLLDPQPHEIVVDAC 265
Query: 344 AAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS 403
AAPGGKT +++ L G VYA+D RL+ + + A + +V +TI D R FA
Sbjct: 266 AAPGGKTTHISDRLKNTGKVYALDRLASRLKKVEQNAARLGITNV-QTIELDAREFAGIP 324
Query: 404 TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463
KCD+VLLD PCSGLG L + AD RW + ++ +L Q E+L A VKP GV+VY
Sbjct: 325 EGKCDRVLLDVPCSGLGTLHRHADARWRQTPDEPYKLAKTQSEILAQAMQWVKPEGVIVY 384
Query: 464 STCSIDPEENEERVEAFLLRHPEFSIDPADGLVP-SDFVTKHGFFFSDPIKHSLDGAFAA 522
STC+I P ENEE +E FL HP++ I P P + F + G+ P +H++DG F
Sbjct: 385 STCTIHPAENEEVIEQFLTHHPDWQIVPPSAENPAAHFASDRGWVKVLPHEHNMDGFFMV 444
Query: 523 RL 524
+L
Sbjct: 445 KL 446
>gi|434391954|ref|YP_007126901.1| sun protein [Gloeocapsa sp. PCC 7428]
gi|428263795|gb|AFZ29741.1| sun protein [Gloeocapsa sp. PCC 7428]
Length = 446
Score = 245 bits (626), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 158/429 (36%), Positives = 225/429 (52%), Gaps = 22/429 (5%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
R DL D RL T++V G++R +R LD LI L +K P L IL +G Y++
Sbjct: 29 LRQTDLSSVDRRLATELVYGSVRRQRSLDALIDQLA--KKKAQQQPPDLRIILHLGLYQL 86
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLL---KDNNSLPLPKLEGNDR 217
LD +P A V+ V LAK G N VNG+LR+ + L +D LP +E
Sbjct: 87 RYLDHIPDAAAVNSTVELAKKNGFSGLANFVNGLLRQYLRLATREDPLKLPAHSVE---- 142
Query: 218 AQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANS-RKGVTRADLVM 276
L ++S+P W++ W K G +E +L W N P+ LR N R V + +
Sbjct: 143 ----RLGILHSYPDWIIEVWLKQFGYKETEQLCAWFNQPPAIDLRINPLRASVEKVATAL 198
Query: 277 QLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPG 336
Q + +V +L + +R T + + G VQD SA LV ++DPQPG
Sbjct: 199 Q----EAEVGVTRVANLPQALRFTTSTGAIEKLPGFDAGWWTVQDSSAQLVSHILDPQPG 254
Query: 337 QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADL 396
+ ++D CAAPGGKT ++A + G ++A D RL+ L + Q+ S I+ D
Sbjct: 255 EVVIDACAAPGGKTTHIAELMQDTGTIWACDRTVSRLKKLQQNIARLQLKS-IQICPGDS 313
Query: 397 RTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVK 456
R + D+VLLDAPCSGLG L + AD RW + E ++EL +LQ ELL S +K
Sbjct: 314 RNLPHFVNI-ADRVLLDAPCSGLGTLHRHADARWRQTPETVKELTVLQTELLTHVSTWIK 372
Query: 457 PGGVLVYSTCSIDPEENEERVEAFLLRHPEFSID-PADGLVPSDFVTKHGFFFSDPIKHS 515
PGGVLVY+TC+++ EENE V+AFL +HP + I+ PA + + T G+ P S
Sbjct: 373 PGGVLVYATCTLNSEENEAIVQAFLTQHPCWRIEHPAANSIGVPYATSSGWMQVLPHHQS 432
Query: 516 LDGAFAARL 524
+DG F RL
Sbjct: 433 MDGFFIVRL 441
>gi|402574141|ref|YP_006623484.1| NusB antitermination factor [Desulfosporosinus meridiei DSM 13257]
gi|402255338|gb|AFQ45613.1| NusB antitermination factor [Desulfosporosinus meridiei DSM 13257]
Length = 454
Score = 245 bits (625), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 169/477 (35%), Positives = 256/477 (53%), Gaps = 43/477 (9%)
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVG 120
R ++ L R++ GA+A+LL +K ++ D RD + VT +V
Sbjct: 7 RGMAVNLLTRVEVEGAYANLLLQKNI-----------------SRLTDSRDRQFVTLLVN 49
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLA 179
G ++ R LD+ L H K SS+ + ILRIG ++I+ +D +PP A ++E+V LA
Sbjct: 50 GVLKHRLTLDY--ALRKHLSKPMSSLPHEVRAILRIGAFQILYVDKVPPAAAINESVELA 107
Query: 180 KVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTK 239
K P LVN +LRK+ ++ +P P L+ R AR L+ YSHP W++ RW K
Sbjct: 108 KNY--PKFPGLVNVVLRKV--MEKGWDIPWPDLK---REPARYLSVRYSHPEWLILRWLK 160
Query: 240 YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFIRV 299
G +E L NN +R N+ K ++R L + L+ + EL L + E +++
Sbjct: 161 RWGAQETEALCKVNNEPAQTWIRTNTLK-ISREAL--KERLISEGISVELGLLVPESLKI 217
Query: 300 KTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSG 359
+ + Q +EGL VQDES+ LV VVDP+PGQS++D C+APGGK+ ++A +
Sbjct: 218 QD-FGALEQLASFQEGLFTVQDESSQLVAHVVDPKPGQSVLDTCSAPGGKSTHLAQLMQN 276
Query: 360 QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGL 419
+G + A DI+ +L ++ + A + ++I+ D R D+VL+D PCSGL
Sbjct: 277 KGEIQAFDIHNHKLELIGQLATKLGI-TIIQPQFGDARDLPGIRLESQDRVLVDVPCSGL 335
Query: 420 GVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEA 479
GVL +RADLRW + + + EL LQ +L+ A+ VK GG LVYSTC+I+PEEN E V+
Sbjct: 336 GVLRRRADLRWQKEEQGLLELPSLQFAILERAASCVKDGGTLVYSTCTIEPEENFELVKK 395
Query: 480 FLLRHPEFSIDPADGL--VPSDFVTKH-------GFFFSDPIKHSLDGAFAARLVRA 527
F + HPEF +P + + +P K G P +H DG F A+ R
Sbjct: 396 FRIAHPEF--EPVNLVEDLPFKLEEKRDIQQAYKGMLQLMPHRHGTDGFFLAKFRRT 450
>gi|303232029|ref|ZP_07318732.1| ribosomal RNA small subunit methyltransferase B [Veillonella
atypica ACS-049-V-Sch6]
gi|429759370|ref|ZP_19291869.1| ribosomal RNA small subunit methyltransferase B [Veillonella
atypica KON]
gi|302513135|gb|EFL55174.1| ribosomal RNA small subunit methyltransferase B [Veillonella
atypica ACS-049-V-Sch6]
gi|429179646|gb|EKY20885.1| ribosomal RNA small subunit methyltransferase B [Veillonella
atypica KON]
Length = 452
Score = 245 bits (625), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 153/477 (32%), Positives = 262/477 (54%), Gaps = 35/477 (7%)
Query: 56 EVSPHRAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLV 115
E++ + +RL+ ++ A +D+ N+KG + Y+ + +L D D R
Sbjct: 3 EIAKNGQKQNIRLLAVK---ALSDI-NRKGAYANIVLQDYISKY------NLSDLDRRFF 52
Query: 116 TDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDE 174
T++V G +R R YLD +I ++ + ++++ILR+G Y+I+ +D +P A V+E
Sbjct: 53 TELVYGVVRRRNYLDAIIVHFA--KRPIKKLSSMVVEILRLGVYQIIYMDKVPESAAVNE 110
Query: 175 NVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMV 234
+V+LAK R G VN ILR ++ ++ +S+ + L ND A++ IY+ P+W++
Sbjct: 111 SVKLAKKLTR-GLSGFVNAILRSVI--REQDSIGIEDLAAND---IEAISFIYNIPLWLI 164
Query: 235 RRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQ---VPHELSL 291
W G+++ L W N P + R N+ D+ L +L Q V +
Sbjct: 165 NLWISEFGRDKTEDLCAWFNEQPKLTARINT----ILIDIPQCLTMLNEQGWAVTQDS-- 218
Query: 292 HLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTL 351
+ ++ I + + ++ ++ +G D+++ LV +V+PQPG+ I+DCCAAPGGK++
Sbjct: 219 NYEDIIYINSHRGSLEKSEAFIKGYITFMDKASMLVARLVNPQPGERILDCCAAPGGKSM 278
Query: 352 YMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVL 411
YMA+ ++ G + + DI++ ++ ++N A S++ T D D+ D+VL
Sbjct: 279 YMATLMNNVGSLMSCDIHEHKIELMNSNADRLGA-SIVHTKVQDATKLPDSWNSYFDRVL 337
Query: 412 LDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPE 471
+DAPCSGLG+L K+ D+RW ++ + EL LQ +L+ A++ VK G L+YSTC+++ +
Sbjct: 338 VDAPCSGLGILQKKLDMRWRKQESILSELPSLQLAILERAAMTVKEKGYLIYSTCTLNYK 397
Query: 472 ENEERVEAFLLRHPEFSIDPADGLVPSDFVTK--HGFFFSDPIKHSLDGAFAARLVR 526
ENEE VEAFL +H EFSI P V DF K G + P +DG F ++ R
Sbjct: 398 ENEEVVEAFLQKHKEFSIIP----VADDFPLKSNSGMITTYPPTDDMDGFFMVKMQR 450
>gi|428311848|ref|YP_007122825.1| ribosomal RNA small subunit methyltransferase RsmB [Microcoleus sp.
PCC 7113]
gi|428253460|gb|AFZ19419.1| ribosomal RNA small subunit methyltransferase RsmB [Microcoleus sp.
PCC 7113]
Length = 485
Score = 245 bits (625), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 169/502 (33%), Positives = 258/502 (51%), Gaps = 44/502 (8%)
Query: 39 KKRAKVSPSRRTQNLNLEVSPHRAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVER 98
++R +SP Q+ + + R ++ L+ IQ G F D+ ++R
Sbjct: 8 RRRWGISP---IQSQKILMHNPRQLAFQALIDIQRRGTFTDI--------------ALDR 50
Query: 99 TLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGF 158
L R L D L T++V G++R +R LD LI L +K P L IL IG
Sbjct: 51 VL--RDTSLSSADRGLATELVYGSVRRQRTLDSLIDQL--GKKKAHQQPPELRTILHIGL 106
Query: 159 YEI-VKLDMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKL----- 212
Y++ + +P A V+ V LAK G +VNG+LR+ L +++ P +
Sbjct: 107 YQLRYQKHIPARAAVNTTVELAKENGFKGLAGVVNGLLRQYERLATASTVSNPSISPEPQ 166
Query: 213 --EGNDRAQ-----ARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANS 265
+ ND Q L +S P WM++ W + LG +E +L W N P+ LR N
Sbjct: 167 NPQSNDPLQLPTEPVERLGVSHSFPDWMIQMWQEQLGLDETEQLCAWLNQTPTIDLRVNP 226
Query: 266 -RKGVTRADLVMQLNLLKLQ-VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDES 323
R + ++ MQ ++++ +P L + +RV G N+ Q +EG VQD S
Sbjct: 227 MRVSIEEVEVAMQSTGVEVRRIPQ-----LPQALRVMGGAGNIQQLPGFREGWWTVQDSS 281
Query: 324 AGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLH 383
A LV +++PQ G+ ++D CAAPGGKT ++A + QG ++A D RL+ L E +
Sbjct: 282 AQLVSHLLNPQAGEVVIDACAAPGGKTTHIAELMGDQGTIWACDRAASRLKKLQENTQRL 341
Query: 384 QVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKIL 443
Q+ S I+ D R F+ T ++VLLDAPCSGLG L +R D+RW ++EL +L
Sbjct: 342 QLQS-IQICTGDSRHFS-QFTDSANRVLLDAPCSGLGTLHRRPDIRWRVTPATVQELSVL 399
Query: 444 QDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSI-DPADGLVPSDFVT 502
Q ELL+ A+ VKP G+LVY+TC++ P ENE +++FL RH E+ I PA + F T
Sbjct: 400 QGELLEQAATWVKPEGILVYATCTLHPLENEGVIQSFLERHSEWQIRPPAPDSALAAFST 459
Query: 503 KHGFFFSDPIKHSLDGAFAARL 524
G+ P ++ +DG F +L
Sbjct: 460 PQGWLKVWPHRYQMDGFFMVQL 481
>gi|313894854|ref|ZP_07828414.1| ribosomal RNA small subunit methyltransferase B [Selenomonas sp.
oral taxon 137 str. F0430]
gi|312976535|gb|EFR41990.1| ribosomal RNA small subunit methyltransferase B [Selenomonas sp.
oral taxon 137 str. F0430]
Length = 451
Score = 245 bits (625), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 151/438 (34%), Positives = 229/438 (52%), Gaps = 16/438 (3%)
Query: 90 DNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPL 149
D V R L DRD R +T++V GT++ LD+++ D K + ++P
Sbjct: 28 DGAYANVALVRAMRAAKLPDRDRRFLTELVYGTVKAGDTLDYILAKYLRDGK--ARIKPQ 85
Query: 150 LLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLP 208
+ ++LR+G Y+I +D +P A + V LAK + GA + VN +LR V + ++P
Sbjct: 86 IRELLRLGIYQIFFMDKVPASAACNTAVELAKKHGKRGADSFVNAVLRTAVREPERAAIP 145
Query: 209 LPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKG 268
+ AR LA HP WMV RW G + A +L NN SLR N+ +
Sbjct: 146 AGR-------SARLLALRAQHPFWMVNRWVSLYGYDRAEELCRCNNERAPLSLRVNTLR- 197
Query: 269 VTRADLVMQLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVV 328
+ R L+ +L Q ++ D + G + + L+EGLC VQDES+ LV
Sbjct: 198 IDREGLLEKLAAAGAQARPSATVP-DGIVVTSHGTLDALAP--LREGLCQVQDESSMLVA 254
Query: 329 AVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSV 388
V+ PG +++D CAAPGGKT ++A + +G +YA D+ +G++ + A+ ++ +
Sbjct: 255 HVLGAAPGMTVIDACAAPGGKTTHIAQRMENRGKIYAFDVYEGKIARIENNARRLGID-I 313
Query: 389 IRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELL 448
I T D R D+VL+DAPCSG GVL ++ D RW R+ E++ L LQ E+L
Sbjct: 314 IETWMLDAREIGARCAGTADRVLIDAPCSGFGVLRRKPDARWRRKPEELGALPKLQQEIL 373
Query: 449 DAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFF 508
A+ V+PGG LVYSTC+++ ENE V+ FL HPEF ++ A +P T+
Sbjct: 374 AGAAAAVRPGGALVYSTCTMETAENEGVVQRFLELHPEFVLERAGAFLPVQ-QTEDAMVQ 432
Query: 509 SDPIKHSLDGAFAARLVR 526
P + DG F AR+ R
Sbjct: 433 IFPTEDGGDGFFIARMKR 450
>gi|254415201|ref|ZP_05028963.1| ribosomal RNA small subunit methyltransferase B [Coleofasciculus
chthonoplastes PCC 7420]
gi|196178007|gb|EDX73009.1| ribosomal RNA small subunit methyltransferase B [Coleofasciculus
chthonoplastes PCC 7420]
Length = 448
Score = 244 bits (624), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 170/468 (36%), Positives = 239/468 (51%), Gaps = 33/468 (7%)
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVG 120
R ++ + L I GAF D+ ++R L T + DR L+TD+V
Sbjct: 5 RQLAFLALRDIHSHGAFTDI--------------ALDRVLRHTTLNRPDR--ALLTDLVY 48
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLA 179
GT R R LD LI L +K P L IL +G Y++ L +PP A V+ +V LA
Sbjct: 49 GTTRHTRTLDALIDQL--GKKKAHQQPPDLRLILHLGLYQLRYLQRIPPSAAVNTSVELA 106
Query: 180 KVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTK 239
K G +VNG+LR+ L N L P L+ + R L +YS P W++ W
Sbjct: 107 KANQLKGLAGVVNGVLRQYARLNTNPQLDDP-LQLPPQPIQR-LGILYSFPDWIIELWLN 164
Query: 240 YLGQEEAIKLMVWNNSDPSFSLRANS-RKGVTRADLVMQLNLLKLQ-VPHELSLHLDEFI 297
LG EE L W N P+ LR N + + MQ +++Q +PH L + +
Sbjct: 165 QLGIEETEALCQWFNQPPTIDLRINPLNASIDTVETAMQAAGIQVQRLPH-----LPQAL 219
Query: 298 RVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCL 357
R + ++ EG +QD SA LV +++PQP I+D CAAPGGKT ++A +
Sbjct: 220 RFQGSTGSIQTLPGFNEGWWTIQDSSAQLVSHLLNPQPHDVIIDACAAPGGKTTHLAELM 279
Query: 358 SGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCS 417
+G ++A D RL+ + + Q+ S I+ D R F T K D VLLDAPCS
Sbjct: 280 RDRGTIWACDKAASRLKKVKANTQRLQLQS-IQICPGDSRDFP-QFTQKADTVLLDAPCS 337
Query: 418 GLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERV 477
GLG L +R D+RW ++EL +LQ ELL + VKPGGVLVY+TC++ P+ENE +
Sbjct: 338 GLGTLHRRPDIRWRCTPARVQELSVLQSELLTQTATWVKPGGVLVYATCTLHPQENEAVI 397
Query: 478 EAFLLRHPEFSID-PADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARL 524
+AFL RH + ID P L + F T G+ P +H +DG F RL
Sbjct: 398 QAFLERHLHWCIDAPPPTL--TAFSTPQGWLKVLPHQHQMDGFFMVRL 443
>gi|51892487|ref|YP_075178.1| hypothetical protein STH1349 [Symbiobacterium thermophilum IAM
14863]
gi|51856176|dbj|BAD40334.1| conserved hypothetical protein [Symbiobacterium thermophilum IAM
14863]
Length = 459
Score = 244 bits (623), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 152/426 (35%), Positives = 232/426 (54%), Gaps = 17/426 (3%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
LD R+ L T++ G R R LD I + + M+P + ILR Y+I+ +D
Sbjct: 43 LDGRERALATELAYGVTRRRATLDWAIGQVA--ARPLEKMDPWVRNILREAAYQILYMDR 100
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+PP A VD+ V LA+ G VNG+LR L+ + LP P E D RALA
Sbjct: 101 IPPAAAVDQAVELARQYGHEGVAKFVNGVLRNLI--RRLPGLPWPD-EAAD--PVRALAV 155
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
+S+P W+V +W + G+ EA++L+ N P ++R N K TR + L ++
Sbjct: 156 QHSYPEWLVAQWLERFGRGEAVRLLEAGNQVPPLTVRVNRLKA-TREEAAAALAAEGVRT 214
Query: 286 PHELSLHLDEFIRVK--TGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCC 343
E + H + + ++ T ++ + +K+GL VQDES+ L AV++PQPG ++D
Sbjct: 215 --EPTRHSPQGLIIQDLTSASSLERLEAMKQGLITVQDESSMLAAAVLNPQPGWMVIDVA 272
Query: 344 AAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS 403
AAPGGK ++A + +G V A+DI+ ++ ++ E A+ +++ + D R +
Sbjct: 273 AAPGGKATHLAELMDNRGRVIALDIHPHKVALIEENAE-RLGTTIVEAVCLDARRVGEAM 331
Query: 404 TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463
+ D VL D PCSGLG L++R D RW + ED+E L +Q +L++A+ +KPGGVLVY
Sbjct: 332 PERADAVLCDLPCSGLGTLARRPDARWRKSPEDVEALVPIQRAILESAAKALKPGGVLVY 391
Query: 464 STCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTK---HGFFFSDPIKHSLDGAF 520
STC+I P+ENEE VE F+ HPEF D +P + G+ P H DG F
Sbjct: 392 STCTIQPKENEELVEGFVADHPEFRFDRVWDYLPGTISPEGQAEGYVQLLPHVHGTDGFF 451
Query: 521 AARLVR 526
AR+V+
Sbjct: 452 IARMVK 457
>gi|119357565|ref|YP_912209.1| sun protein [Chlorobium phaeobacteroides DSM 266]
gi|119354914|gb|ABL65785.1| sun protein [Chlorobium phaeobacteroides DSM 266]
Length = 444
Score = 244 bits (623), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 153/427 (35%), Positives = 233/427 (54%), Gaps = 30/427 (7%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
++ +D L T++V G +R R+ +D +I H F P+L ILR+G Y+++ L+
Sbjct: 34 MNRQDRALTTELVNGVLRMRKKIDFIISKFYHHR--FEKAAPVLQNILRLGVYQLLFLEK 91
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P +A V E V LA+ LVNG+LRK+ +N + L+G + + L+
Sbjct: 92 IPEWAAVSECVDLARKYKGERMAKLVNGVLRKIT---PDNVVMDEWLKGCEDMER--LSV 146
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
YSHP W++ RW G+E + M +NN P F R N+ K L +
Sbjct: 147 QYSHPEWLINRWNAVYGRETTLASMTYNNHAPLFGFRINTLKQTPDEFLA---DPAHSSF 203
Query: 286 PHELSLHLDEFIRVK-TGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 344
P E L + F+ + G + +++G L VQ+ + G+ +++P P ++D CA
Sbjct: 204 PQERCLTGNFFLSKEFAGFEACLKSGKL-----TVQNPTQGVACLLLNPVPESRVLDLCA 258
Query: 345 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVN---SVIRTIHADLRTFAD 401
APGGK +MA + +G + A+D + +L E + H V ++I+TI AD R+F
Sbjct: 259 APGGKATFMAELMQNKGSITAVDRSSEKL----EKTRQHAVELGITIIKTICADARSFVP 314
Query: 402 NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVL 461
T + VLLDAPC+G GVL KRA+LRW +E ++EL LQ ELLD A+ ++ G+L
Sbjct: 315 EETPQA--VLLDAPCTGTGVLQKRAELRWKLSMEMLQELVTLQRELLDHAASILPVNGIL 372
Query: 462 VYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDF---VTKHGFFFSDPIK-HSLD 517
+Y+TCSI+PEENE ++EAFL RHPEFS D + G +P F + G + P + D
Sbjct: 373 LYATCSIEPEENELQIEAFLRRHPEFSRDTSCGSLPEPFRMSAAEKGSILTLPGELPGFD 432
Query: 518 GAFAARL 524
G FA RL
Sbjct: 433 GGFAQRL 439
>gi|188585963|ref|YP_001917508.1| sun protein [Natranaerobius thermophilus JW/NM-WN-LF]
gi|179350650|gb|ACB84920.1| sun protein [Natranaerobius thermophilus JW/NM-WN-LF]
Length = 462
Score = 244 bits (622), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 153/436 (35%), Positives = 237/436 (54%), Gaps = 26/436 (5%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD 165
DL +D L + I GT++W+ +D+ + L H + S + L +LR+G Y+I+ LD
Sbjct: 36 DLLAQDKALASRITYGTLQWQGLIDYYLKTLSH--RPLSKLSNKALFLLRMGAYQILFLD 93
Query: 166 -MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+PP A V+E V++A G N VNGILR L+ KD LP D+ L+
Sbjct: 94 RVPPSASVNETVKVAHRRTHKGIANFVNGILRNLIRKKDQILLP-----SRDQDLLNYLS 148
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQ 284
YSHP WMV+ W G ++ I +M NNS P ++R N + + +L +L + +Q
Sbjct: 149 VKYSHPYWMVKLWYDKYGLDKTISIMDQNNSTPEEAIRVN-KLLTSLENLKNELEMTGIQ 207
Query: 285 VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 344
LS +D+ + V L ++ L G VQD ++ +V + DPQ G +I+D C+
Sbjct: 208 --SRLSSKIDDALLVDN-LGDLNNNTLFNCGYFQVQDINSMVVSHLCDPQQGDNIIDLCS 264
Query: 345 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSV-------IRTIHADLR 397
APG KT ++ + GQG + A+DI++ RL+++ E + QVN+V + I D +
Sbjct: 265 APGSKTTHLVQLIDGQGSILAVDIHEHRLKLVKEACRRLQVNNVNVKQADGTKLISRDQQ 324
Query: 398 TFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKP 457
+ D L+DAPCSGLG L KR +L+W +D+ L LQ +LL A S LVKP
Sbjct: 325 ENNKQLKGQFDLCLIDAPCSGLGTLRKRPELKWTISEQDLNSLSTLQGKLLKAGSQLVKP 384
Query: 458 GGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSD------P 511
GG LVYSTC+I+P+ENE+++ FL HP+F ++ ++ D + + G S+ P
Sbjct: 385 GGTLVYSTCTINPQENEDQINDFLKNHPDFVMESPRAILKEDTL-QGGMILSNNSLQYFP 443
Query: 512 IKHSLDGAFAARLVRA 527
+ DG + AR+ +
Sbjct: 444 ELNLGDGFYGARMKKT 459
>gi|110598393|ref|ZP_01386666.1| sun protein:transcription antitermination factor NusB [Chlorobium
ferrooxidans DSM 13031]
gi|110340002|gb|EAT58504.1| sun protein:transcription antitermination factor NusB [Chlorobium
ferrooxidans DSM 13031]
Length = 447
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 155/423 (36%), Positives = 232/423 (54%), Gaps = 22/423 (5%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L+ D L T +V G +R+R LD +I H + P+L ILR+G Y+I+ LD
Sbjct: 35 LNRIDRALATGLVNGVLRYRLQLDFIISRYYHHK--LEKAAPVLKNILRLGLYQILFLDK 92
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P +A V+E V+LAK LVNG+LRK+ S+ L + +R + LA
Sbjct: 93 VPDWAAVNECVKLAKKYKGDRMSKLVNGVLRKIT----PQSIALDEWL-KEREPSEQLAI 147
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
+SHP W+V RW G ++ L+ +NN P F R N K T + + L
Sbjct: 148 KHSHPKWLVERWIADYGLKKTEALLTYNNRFPLFGFRINRLK--TSEEQLFSDPLFSSAA 205
Query: 286 PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAA 345
+ E + + A + +G VQ+ + L +++P PG +++D CAA
Sbjct: 206 YEACGI---ENLFISKEFSTFEPA--VSDGRLTVQNPTQALACLLLNPVPGSAVLDLCAA 260
Query: 346 PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTV 405
PGGK+ +MA + G V ++D+ + +L + A+ + ++IRT+ AD R+F +
Sbjct: 261 PGGKSTFMAELMGNNGSVTSLDLYEQKLLKITTHAEALGI-TIIRTVAADARSFKPEN-- 317
Query: 406 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465
+ D +LLDAPCSG GV+ +R +LRW E ++EL LQ ELLD A+ L++ GVLVY+T
Sbjct: 318 RPDAILLDAPCSGSGVVGRRTELRWKLTPETIQELITLQMELLDHAAELLEENGVLVYAT 377
Query: 466 CSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGF---FFSDPIKH-SLDGAFA 521
CSI+PEEN ++EAFL RHP+FS+DP G VP F+ K GF + P ++ DG FA
Sbjct: 378 CSIEPEENALQIEAFLERHPDFSVDPDRGKVPEPFLPKSGFKGAILTLPGEYPGFDGGFA 437
Query: 522 ARL 524
RL
Sbjct: 438 QRL 440
>gi|125973090|ref|YP_001037000.1| sun protein [Clostridium thermocellum ATCC 27405]
gi|256004593|ref|ZP_05429571.1| sun protein [Clostridium thermocellum DSM 2360]
gi|281417285|ref|ZP_06248305.1| sun protein [Clostridium thermocellum JW20]
gi|385779009|ref|YP_005688174.1| sun protein [Clostridium thermocellum DSM 1313]
gi|419721504|ref|ZP_14248667.1| sun protein [Clostridium thermocellum AD2]
gi|419725128|ref|ZP_14252181.1| sun protein [Clostridium thermocellum YS]
gi|125713315|gb|ABN51807.1| sun protein [Clostridium thermocellum ATCC 27405]
gi|255991465|gb|EEU01569.1| sun protein [Clostridium thermocellum DSM 2360]
gi|281408687|gb|EFB38945.1| sun protein [Clostridium thermocellum JW20]
gi|316940689|gb|ADU74723.1| sun protein [Clostridium thermocellum DSM 1313]
gi|380771449|gb|EIC05316.1| sun protein [Clostridium thermocellum YS]
gi|380782444|gb|EIC12079.1| sun protein [Clostridium thermocellum AD2]
Length = 455
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 151/432 (34%), Positives = 243/432 (56%), Gaps = 32/432 (7%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSME-----PLLLQILRIGFY 159
++ + D +TDIV GT++W+ +D+LI + FSS++ P + ILR+G Y
Sbjct: 39 QEFESIDRAFITDIVYGTLKWQYTIDYLI-------EKFSSVKIKKISPWIFNILRMGIY 91
Query: 160 EIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRA 218
+++ D +P +A +E+V+LA + VN +LR + K+N LP P ND A
Sbjct: 92 QLIYTDKIPFFAACNESVKLAAKYGHAASSKYVNAVLRNIARNKEN--LPYPD-RNNDTA 148
Query: 219 QARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQL 278
L+ YSHPVWMV+ W G+E L+ NN F++R N K +++ +LV L
Sbjct: 149 HY--LSVKYSHPVWMVKDWLDCFGEEFTEGLLKANNEVAPFTVRVNDLK-ISKKELVDIL 205
Query: 279 NLLKLQVPHELSLHLDE--FIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPG 336
+V E +LDE IR + +Q + +G VQDES+ LV V+DP+PG
Sbjct: 206 TKDGFEV--ENGKYLDEALIIRNPSAVQ---KMDAFAKGYFQVQDESSMLVAKVLDPKPG 260
Query: 337 QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADL 396
++I+D C+APGGK+ ++A + +G V + DI++ +++++ E AK +I+T D
Sbjct: 261 ETILDVCSAPGGKSTHIAQIMKNRGTVISRDIHEHKIKLI-EQAKERLGLEIIKTEVFDA 319
Query: 397 RTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVK 456
K D+VL+DAPC+G G++ ++ D++W++ ED E+ LQ ++L AS VK
Sbjct: 320 AVLDGKLIEKIDRVLVDAPCTGFGIIRRKPDIKWSKNSEDKAEIVSLQHKILSTASKYVK 379
Query: 457 PGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKH----GFFFSDPI 512
GGVLVYSTC+++PEENE+ VE F+ + +F ++ +P D + K G+ P
Sbjct: 380 DGGVLVYSTCTLEPEENEKAVERFIEENKDFYLEDITEFLP-DALRKESAGKGYIQLYPN 438
Query: 513 KHSLDGAFAARL 524
+DG F AR+
Sbjct: 439 IDGIDGFFIARM 450
>gi|357012410|ref|ZP_09077409.1| 16S rRNA methyltransferase B [Paenibacillus elgii B69]
Length = 494
Score = 243 bits (619), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 153/422 (36%), Positives = 237/422 (56%), Gaps = 17/422 (4%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
LD D L T+IV GT++ +D + K + ++P + +LR+ FY++ LD
Sbjct: 82 LDKPDAGLATEIVYGTVQRLGTIDFFLERFV--SKGLAKLQPWVRNLLRLSFYQLHYLDR 139
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P +A+V+E V +AK G +VNG+LR + L+ + L LP G Q ALA
Sbjct: 140 IPDHAIVNEAVNIAKRRGHQGISGMVNGVLRSV--LRSKSELVLPA--GLPAEQRIALAQ 195
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
SHP W+VR W + G+ A +L NN+ P SLRAN K + +L +L L+
Sbjct: 196 --SHPEWLVRHWVREFGERTAERLCEANNTSPRVSLRANGLK-LGPGELAERLRQGGLEA 252
Query: 286 PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAA 345
+R G N+ + GL +VQDES+ LV VDPQPG+ ++DCCAA
Sbjct: 253 EPSAVAPAGVIVR---GGGNMALSPDYAAGLYSVQDESSMLVAEWVDPQPGERVLDCCAA 309
Query: 346 PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTV 405
PGGKT ++A + +G + A D+++ + +++ E A+ + S IRT+ AD R A++
Sbjct: 310 PGGKTTHLAEKMGDRGEIVACDVHEHKRKLIEEQAERLALRS-IRTLTADARRLAEHFAP 368
Query: 406 KC-DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464
+ D++LLDAPCSGLGV+ ++ D++W++ ++ E+ +Q ELL+A L+KPGG+LVYS
Sbjct: 369 ESFDRILLDAPCSGLGVIRRKPDMKWSKSEAELAEICDIQRELLEAVHPLLKPGGILVYS 428
Query: 465 TCSIDPEENEERVEAFLLRHPEFSIDPAD--GLVPSDFVTKHGFFFSDPIKHSLDGAFAA 522
TC+++ ENE+ + AFL RHP F D + ++ + P + DG F A
Sbjct: 429 TCTVEKAENEDMIRAFLERHPSFEADLPEVPEMIKGRLDEELAAVRIMPYDYGSDGFFIA 488
Query: 523 RL 524
RL
Sbjct: 489 RL 490
>gi|170077132|ref|YP_001733770.1| ribosomal RNA small subunit methyltransferase B (rRNA
(cytosine-C(5)-)-methyltransferase) [Synechococcus sp.
PCC 7002]
gi|169884801|gb|ACA98514.1| ribosomal RNA small subunit methyltransferase B (rRNA
(cytosine-C(5)-)-methyltransferase) [Synechococcus sp.
PCC 7002]
Length = 447
Score = 243 bits (619), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 153/425 (36%), Positives = 230/425 (54%), Gaps = 17/425 (4%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD 165
+L D LV ++V GT+R ++ LD +I L +K P L +L++G Y++ LD
Sbjct: 34 NLTGSDRALVAELVYGTVRRQKTLDAIIDQL--GKKPIDQQPPDLRVLLQLGLYQLRYLD 91
Query: 166 -MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+PP A V+ +V +AK +VNG LR + +D PL E A A LA
Sbjct: 92 QIPPSAAVNTSVEIAKTNKLGQLAGVVNGCLRGYLRQRDKGHDPLQLPE----AAAERLA 147
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQ 284
YS P W++ +W + G EE +L W N LR N + A +Q L +
Sbjct: 148 LQYSFPEWLIGQWLEQFGAEETEQLCQWFNRPAQLDLRVNPLRANVAA---VQDKLNQAG 204
Query: 285 VPHELSLHLDEFIRV--KTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 342
V E +L +R+ K GL + KEG +QD SA LV ++DPQPG+ I+D
Sbjct: 205 VKAEAIANLPNALRLVEKRGLIQDLPG--YKEGWWTIQDASAQLVTHLLDPQPGEVIIDA 262
Query: 343 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN 402
CAAPGGKT ++A + +G ++A D + R+ + + A+ ++ S+IRT+ D RT++
Sbjct: 263 CAAPGGKTTHIAEKMQDRGTIWASDKYQARINKIEQNARRLKL-SMIRTLIGDSRTYSQF 321
Query: 403 STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLV 462
+ D+VLLD PCSGLG L KR D+RW + + + +L LQ ELL + VKPGG LV
Sbjct: 322 RNM-ADRVLLDVPCSGLGTLHKRPDIRWQQNPQKIAQLTQLQGELLTTGATWVKPGGYLV 380
Query: 463 YSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPS-DFVTKHGFFFSDPIKHSLDGAFA 521
Y+TC+++P ENE FL+ HP++ I P +P+ + + G+ P +H +DG F
Sbjct: 381 YATCTLNPAENEAIANQFLVEHPDWQIVPPSPDLPAFPYAQEQGWIQVLPQRHDMDGFFM 440
Query: 522 ARLVR 526
+L R
Sbjct: 441 VKLQR 445
>gi|402303061|ref|ZP_10822159.1| ribosomal RNA small subunit methyltransferase B [Selenomonas sp.
FOBRC9]
gi|400379291|gb|EJP32135.1| ribosomal RNA small subunit methyltransferase B [Selenomonas sp.
FOBRC9]
Length = 455
Score = 242 bits (618), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 151/438 (34%), Positives = 227/438 (51%), Gaps = 16/438 (3%)
Query: 90 DNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPL 149
D V R L DRD R +T++V GT++ LD +I D K + ++P
Sbjct: 32 DGAYANVALVRAMRAAQLTDRDRRFLTELVYGTVKAGDTLDDMIAKYLRDGK--ARIKPQ 89
Query: 150 LLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLP 208
+ +ILR+G Y+I +D +P A + V LAK + GA + VN +LR V + ++P
Sbjct: 90 IREILRLGIYQIFFMDKVPASAACNTAVELAKKHGKRGADSFVNAVLRAAVREPERAAIP 149
Query: 209 LPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKG 268
+ AR LA HP WM RW + G E A +L NN +LR N+ +
Sbjct: 150 AGR-------NARLLALREQHPFWMANRWVRLYGYERAEELCRCNNGSAPLALRVNTLR- 201
Query: 269 VTRADLVMQLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVV 328
+ R L+ +L Q ++ D + G + + L+EGLC VQDES+ LV
Sbjct: 202 IDREGLLEKLAAAGAQARPSATVP-DGIVVTSHGTLDALAP--LREGLCQVQDESSMLVA 258
Query: 329 AVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSV 388
V+ PG +++D CAAPGGKT ++A + +G +YA D+ +G++ + A+ ++ +
Sbjct: 259 HVLGAAPGMTVIDACAAPGGKTTHIAQRMENRGKIYAFDVYEGKIARIENNARRLGID-I 317
Query: 389 IRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELL 448
I D R + D+VL+DAPCSG GVL ++ D RW R+ E+ L LQ E+L
Sbjct: 318 IEPRLLDAREIGAHYAGTADRVLIDAPCSGFGVLRRKPDARWRRKPEEPGALPKLQQEIL 377
Query: 449 DAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFF 508
A+ V+PGG LVYSTC+++ ENE V+ FL HPEF ++ A +P T+
Sbjct: 378 AGAAAAVRPGGALVYSTCTMETAENEGVVQRFLELHPEFVLERAGAFLPVQ-QTEDAMVQ 436
Query: 509 SDPIKHSLDGAFAARLVR 526
P + DG F AR+ R
Sbjct: 437 IFPTEDGGDGFFIARMKR 454
>gi|334134798|ref|ZP_08508300.1| ribosomal RNA small subunit methyltransferase B [Paenibacillus sp.
HGF7]
gi|333607642|gb|EGL18954.1| ribosomal RNA small subunit methyltransferase B [Paenibacillus sp.
HGF7]
Length = 489
Score = 242 bits (618), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 157/432 (36%), Positives = 236/432 (54%), Gaps = 21/432 (4%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
R DL D L T+IV GTI+ R +D+ + L K ++P + +LR+ Y++
Sbjct: 70 LREADLPRPDAALATEIVYGTIQRRNTIDYYLAKLV--TKGLGKLQPWVRSLLRMSLYQL 127
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
+ L+ +P +AVV E V +AK G +VNG+LR + + +LP +G Q
Sbjct: 128 LYLERVPDHAVVSEAVNIAKRRGHQGISGMVNGVLRSAIRQRAELTLP----QGMTDTQR 183
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
+L +SHP W+VRRWT G E ++ NN P S+RAN+R+ A L+ QL L
Sbjct: 184 ISLE--HSHPEWLVRRWTLQYGAEACERICKANNEPPHISIRANTRRQHPDA-LLEQLRL 240
Query: 281 LKLQV-PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSI 339
P LS I V +G + G +G ++QDES+ LV + P+ G ++
Sbjct: 241 GGFDAEPSALS---PAGIVVSSGGNMALTPGF-GQGDYSIQDESSMLVAEALRPEAGMTV 296
Query: 340 VDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF 399
+DCCAAPGGKT ++A + G V+A D++ + R+++E A+ + SV T+ D R
Sbjct: 297 LDCCAAPGGKTAHIAEKMDDTGTVWACDLHPHKKRLIDEQAQRLGLKSV-HTLVKDAREL 355
Query: 400 ADN-STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPG 458
A D++LLDAPCSG GV+ ++ DL+W +R ED+ + +Q +L+A L+KPG
Sbjct: 356 AGEFEPASFDRILLDAPCSGFGVIRRKPDLKWGKREEDIAGIAAVQQSILEAVHGLLKPG 415
Query: 459 GVLVYSTCSIDPEENEERVEAFLLRHPEFSID--PADGLVPSDFVTK--HGFFFSDPIKH 514
GVLVYSTC+I+ ENE+ V FL HP+F +D P G S + + G P ++
Sbjct: 416 GVLVYSTCTIERTENEDAVARFLEAHPDFVLDPIPTTGWPESAPLEQAASGMISIMPDQY 475
Query: 515 SLDGAFAARLVR 526
DG F AR+ R
Sbjct: 476 GTDGFFIARIRR 487
>gi|75910625|ref|YP_324921.1| rRNA SAM-dependent methyltransferase [Anabaena variabilis ATCC
29413]
gi|75704350|gb|ABA24026.1| Fmu, rRNA SAM-dependent methyltransferase [Anabaena variabilis ATCC
29413]
Length = 449
Score = 242 bits (617), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 158/431 (36%), Positives = 228/431 (52%), Gaps = 23/431 (5%)
Query: 101 GFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQ-ILRIGFY 159
+ +L D D RLVT+++ G++R +R LD +I L K S +P L+ IL +G Y
Sbjct: 28 ALQKANLSDIDRRLVTELLYGSVRRQRTLDFIIDQLA---KKKSHQQPTELRSILHLGLY 84
Query: 160 EI-VKLDMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNS--LPLPKLEGND 216
++ + +P A V+ V LAK G VNG+LR+ + L + + L LP+
Sbjct: 85 QLRYQERIPASAAVNTTVELAKDNGFAGLTGFVNGLLRQYIRLAEASPDFLELPE----- 139
Query: 217 RAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANS-RKGVTRADLV 275
L ++S P W+++ W + LG E KL W N P+ LR N R V +
Sbjct: 140 -NPVERLGILHSFPDWIIKVWLEQLGLTETEKLCEWMNQTPTLDLRVNPLRTSVAEVETA 198
Query: 276 MQ-LNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQ 334
++ +L +PH L + +R+ ++ + +G VQD SA LV ++DPQ
Sbjct: 199 LKSAGVLARPIPH-----LPQALRLIGNTGSIQKLPGFSQGWWVVQDASAQLVSHLLDPQ 253
Query: 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHA 394
PG+ I+D CAAPGGKT ++A + QG V+A D RLR L E A+ ++S I
Sbjct: 254 PGEVIIDACAAPGGKTTHIAELMKDQGKVWAGDRTASRLRKLKENAQRLNLHS-IEICTG 312
Query: 395 DLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLL 454
D R V D+VLLDAPCSGLG L + AD RW + E ++EL LQ ELL S
Sbjct: 313 DSRNLPQFYNV-ADRVLLDAPCSGLGTLHRHADARWRQTPESVQELSTLQQELLSHTSKF 371
Query: 455 VKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVP-SDFVTKHGFFFSDPIK 513
VK GGVLVY+TC++ P ENEE + F+ R+ ++ I+P P SD+ T G+ P
Sbjct: 372 VKVGGVLVYATCTLHPAENEEVITEFMARNSDWQIEPPSPDSPYSDYTTPQGWLKVWPHN 431
Query: 514 HSLDGAFAARL 524
+DG F RL
Sbjct: 432 QDMDGFFMVRL 442
>gi|401679779|ref|ZP_10811703.1| ribosomal RNA small subunit methyltransferase B [Veillonella sp.
ACP1]
gi|400218906|gb|EJO49777.1| ribosomal RNA small subunit methyltransferase B [Veillonella sp.
ACP1]
Length = 452
Score = 242 bits (617), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 152/477 (31%), Positives = 261/477 (54%), Gaps = 35/477 (7%)
Query: 56 EVSPHRAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLV 115
E++ + +RL+ ++ A +D+ N+KG + Y+ + +L D D R
Sbjct: 3 EIAKNGQKQNIRLLAVK---ALSDI-NRKGAYANIVLQDYISKY------NLSDLDRRFF 52
Query: 116 TDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDE 174
T++V G +R R YLD +I ++ + ++++ILR+G Y+I+ +D +P A V+E
Sbjct: 53 TELVYGVVRRRNYLDAIIVHFA--KRPIKKLSSMVVEILRLGVYQIIYMDKVPESAAVNE 110
Query: 175 NVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMV 234
+V+LAK R G VN ILR ++ ++ +S+ + L ND A++ IY+ P+W++
Sbjct: 111 SVKLAKKLTR-GLSGFVNAILRSVI--REQDSIGIEDLAAND---IEAISFIYNIPLWLI 164
Query: 235 RRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQ---VPHELSL 291
W G+++ L W N P + R N+ D+ L +L Q V +
Sbjct: 165 NLWISEFGRDKTEDLCAWFNEQPKLTARINT----ILIDIPQCLTMLNEQGWAVTQDS-- 218
Query: 292 HLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTL 351
+ ++ I + + ++ ++ +G D+++ LV +V+PQPG+ I+DCCAAPGGK++
Sbjct: 219 NYEDIIYINSHRGSLEKSEAFIKGYITFMDKASMLVARLVNPQPGERILDCCAAPGGKSM 278
Query: 352 YMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVL 411
YMA+ + G + + DI++ ++ ++N A S++ T D D+ D+VL
Sbjct: 279 YMATLMDNVGSLMSCDIHEHKIELMNSNADRLGA-SIVHTKVQDATKLPDSWNSYFDRVL 337
Query: 412 LDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPE 471
+DAPCSGLG+L K+ D+RW ++ + EL LQ +L+ A++ VK G L+YSTC+++ +
Sbjct: 338 VDAPCSGLGILQKKLDMRWRKQESILRELPPLQLAILERAAMTVKEKGYLIYSTCTLNYK 397
Query: 472 ENEERVEAFLLRHPEFSIDPADGLVPSDFVTK--HGFFFSDPIKHSLDGAFAARLVR 526
ENEE VE+FL +H EFSI P V DF K G + P +DG F ++ R
Sbjct: 398 ENEEVVESFLQKHKEFSIIP----VVEDFPLKSNSGMITTYPPTDDMDGFFMVKMQR 450
>gi|332710036|ref|ZP_08429991.1| ribosomal RNA small subunit methyltransferase RsmB [Moorea
producens 3L]
gi|332351179|gb|EGJ30764.1| ribosomal RNA small subunit methyltransferase RsmB [Moorea
producens 3L]
Length = 477
Score = 242 bits (617), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 167/486 (34%), Positives = 247/486 (50%), Gaps = 45/486 (9%)
Query: 61 RAVSAVRLMRIQFGGAFADL-LNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIV 119
R ++ + L I GAFAD+ LN+ L D LVT++V
Sbjct: 15 RQLAFLALRDIHRRGAFADIALNRV-----------------LHNAQLTGADRGLVTELV 57
Query: 120 GGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI-VKLDMPPYAVVDENVRL 178
G++R +R LD L+ L +K + P L IL +G Y++ + +P A V+ V L
Sbjct: 58 YGSVRRQRTLDALLDQL--GKKKANQQPPDLRTILHLGLYQLRYQGRIPASAAVNTTVDL 115
Query: 179 AKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWT 238
AK G +VNG+LR L N+ PL +L D + L ++S P WM+ W
Sbjct: 116 AKNNGFKGLAGVVNGLLRNYARLAANSPDPL-ELPAGDMER---LGILHSFPDWMIELWL 171
Query: 239 KYLGQEEAIKLMVWNNSDPSFSLRANSRK-GVTRADLVMQLNLLKLQVPHELSLHLDE-- 295
+ LG EE +L W N P+ LR N K + + MQ L +Q L H DE
Sbjct: 172 QQLGLEETEQLCQWFNQSPTIDLRINPLKVSIEEVEAGMQSAELAIQRVPTLVSHQDEGN 231
Query: 296 ---------------FIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIV 340
+R+ G+ + + KEG VQD SA LV ++DPQPG ++
Sbjct: 232 GEIIPMFSNPAQLPQALRIVGGVGAIQELPGFKEGWWTVQDCSAQLVSYLLDPQPGDVVI 291
Query: 341 DCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 400
D CAAPGGKT ++A ++ QG ++A D + RL+ + + A+ ++ S I+ D R
Sbjct: 292 DACAAPGGKTTHIAELMADQGKIWACDRSASRLKKVQQNAQRLELQS-IQISTGDSRDCP 350
Query: 401 DNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGV 460
+ + V + VLLDAPCSG G L +R D+RW E ++EL +LQ ELL+ + VKPGGV
Sbjct: 351 EFTNV-ANAVLLDAPCSGNGTLHRRPDIRWRMTPEKVQELTVLQKELLEHTATWVKPGGV 409
Query: 461 LVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAF 520
LVY+TC+++P+ENE ++ FL H ++ I+P +F T G+ P + +DG F
Sbjct: 410 LVYATCTLNPQENEAVIQWFLEGHSQWQIEPPTVSFLKEFSTPEGWLKVVPYRDQMDGFF 469
Query: 521 AARLVR 526
RL R
Sbjct: 470 MVRLKR 475
>gi|342214380|ref|ZP_08707078.1| ribosomal RNA small subunit methyltransferase B [Veillonella sp.
oral taxon 780 str. F0422]
gi|341593929|gb|EGS36741.1| ribosomal RNA small subunit methyltransferase B [Veillonella sp.
oral taxon 780 str. F0422]
Length = 452
Score = 242 bits (617), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 146/419 (34%), Positives = 235/419 (56%), Gaps = 15/419 (3%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L+D D R T++V G +R + YLD +I +K + P +L+ILR+G Y+++ +D
Sbjct: 43 LEDLDRRFFTELVYGVVRRKNYLDAVIVHFT--KKPVKKLSPFVLEILRLGVYQLLYMDK 100
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A V+E+V+LAK + PG VN +LR + +++ + + ++A ++
Sbjct: 101 VPSSAAVNESVKLAK-KVAPGTDRFVNALLRNVDRQREDIGV-----DALASSEAERISY 154
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
IY+ P+W+VR W + G EE I L W N P + R N+ + ++R DL+ +L+ V
Sbjct: 155 IYNQPLWLVRLWIEQRGLEETIDLCEWFNETPLLTARVNTLR-ISRHDLLEELSQANWVV 213
Query: 286 PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAA 345
E S + + I +K+ + +A ++EGL DE++ V V P+ I+D CAA
Sbjct: 214 --EPSHMIPDAIIIKSHKGQLQEAKWVQEGLMTFMDEASMAVAYAVQPKQHMHILDTCAA 271
Query: 346 PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTV 405
PGGKTL+MA+ + G + A DI++ ++ +L AK ++++V + D +
Sbjct: 272 PGGKTLHMATLMDNTGTIVATDIHEHKVELLQANAKRMKISNV-QPQQGDATVKEEQWKE 330
Query: 406 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465
D VL+DAPCSGLG+L K+ D+RW + ++EL +LQ ++L AS VK GG LVYST
Sbjct: 331 SFDAVLVDAPCSGLGILQKKLDMRWRKEESQLQELPMLQKQILQNASSYVKVGGYLVYST 390
Query: 466 CSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARL 524
C+I+ ENE VE FL +P F ++ L+P F + P + +DG F ARL
Sbjct: 391 CTINTLENEGVVENFLRENPNFILEDVAPLLP--FAAEGPMVTLLPHVYDMDGFFIARL 447
>gi|315646179|ref|ZP_07899299.1| sun protein [Paenibacillus vortex V453]
gi|315278378|gb|EFU41694.1| sun protein [Paenibacillus vortex V453]
Length = 460
Score = 242 bits (617), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 147/435 (33%), Positives = 236/435 (54%), Gaps = 27/435 (6%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
+ L D L T+++ GTI LD+ + + K + ++P + +LR+ Y++
Sbjct: 40 LQKASLSKSDAGLATELIYGTISRLNTLDYFLDRYVN--KGVAKLQPWVRALLRMSLYQV 97
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
V LD +P +AVV E V LAK G +VNG+LR ++ K + ++P D A
Sbjct: 98 VYLDRIPDHAVVSEAVNLAKRRGHQGISGMVNGVLRNILRQKADLTIP------EDMPAA 151
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
R ++ ++SHP W+V RW G E + NN P+ S+R N+ ++ + +
Sbjct: 152 RRISLLHSHPQWLVERWIAQYGTEATEAICAANNEPPAVSVRVNT-------TMISREEM 204
Query: 281 LKLQVPHELSLH---LDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQ 337
LKL H L L + V G N+ ++GL ++QDES+ LV + P+PG
Sbjct: 205 LKLMGSHGLDATPSPLSPYGIVVKGAGNMALTDWYRDGLISIQDESSMLVAEAIQPEPGM 264
Query: 338 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR 397
++DCCAAPGGK+ +M + +G + A DI+ + +++++ A ++S++ T+ D
Sbjct: 265 RVLDCCAAPGGKSAHMGELMKDEGSIIANDIHTHKGKLISDQASRLGLDSIM-TVTGDAL 323
Query: 398 TFADN-STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVK 456
AD D++LLDAPCSGLGV+ ++ DL+W + ED+ E+ LQ LL++ S L++
Sbjct: 324 DLADRFEPASFDRILLDAPCSGLGVIRRKPDLKWGKSEEDIAEIAALQLRLLESVSSLLR 383
Query: 457 PGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGL-----VPSDFVTKHGFFFSDP 511
PGG+LVYSTC+++P ENE V AFL H EF+I DGL + + + G P
Sbjct: 384 PGGILVYSTCTMEPLENEGVVSAFLEGHAEFAI-ADDGLGSLSRLEEKSLLRGGGVQILP 442
Query: 512 IKHSLDGAFAARLVR 526
+ DG + AR+ R
Sbjct: 443 QHYHSDGFYIARISR 457
>gi|302389593|ref|YP_003825414.1| sun protein [Thermosediminibacter oceani DSM 16646]
gi|302200221|gb|ADL07791.1| sun protein [Thermosediminibacter oceani DSM 16646]
Length = 450
Score = 241 bits (615), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 155/430 (36%), Positives = 235/430 (54%), Gaps = 22/430 (5%)
Query: 104 TKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVK 163
T ++ D L+T++V G I+ R LD+++ + + + P++L LR+G Y+I+
Sbjct: 34 TAEISREDRALITELVYGVIKHRIRLDYVLSKFS--KIGLNDINPIILNCLRVGLYQILF 91
Query: 164 LD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQ--A 220
LD +P YA V+E+V +AK+ + AG VNG+LR ++ KD P DR +
Sbjct: 92 LDKIPDYAAVNESVNIAKLYSKKAAG-FVNGVLRNVIRSKDGIDYP-------DRVKDPL 143
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
R L YS P WM+RRW G E L N P +R N K + + L Q L
Sbjct: 144 RYLVVYYSFPKWMIRRWLDLFGFEFTESLCKAFNEKPRMCVRVNELK-INKTGL--QAFL 200
Query: 281 LKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIV 340
K V H L L+E + + G + + K G QDES+ LV + G++++
Sbjct: 201 DKEGVVHNPGLFLEEALYIDDG-PPLTELDSFKNGYFQPQDESSMLVARALGAASGETVL 259
Query: 341 DCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 400
D AAPGGKT ++A + G +YA DI+ R+++L ET + V+ V + D R
Sbjct: 260 DVAAAPGGKTTHLAQLMKNSGRIYAWDIHPHRVQLLKETCQRLGVSIVYPEVR-DARVPD 318
Query: 401 DNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGV 460
N K D+VL+DAPCSGLGV+ ++ D++W ++ ED+ LK Q +++ +S VKPGG+
Sbjct: 319 KNLFGKFDRVLVDAPCSGLGVIRRKPDIKWTKKPEDIPVLKREQLQIIRVSSQYVKPGGI 378
Query: 461 LVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVP----SDFVTKHGFFFSDPIKHSL 516
L+YSTCSI+PEEN E V+ FL + +F +D +P +D ++G+ P HS+
Sbjct: 379 LIYSTCSIEPEENREVVKEFLKENRDFDLDDIRPHLPEALSADVKEQYGYIQIYPNLHSI 438
Query: 517 DGAFAARLVR 526
DG F ARL R
Sbjct: 439 DGFFIARLKR 448
>gi|113474586|ref|YP_720647.1| sun protein [Trichodesmium erythraeum IMS101]
gi|110165634|gb|ABG50174.1| sun protein [Trichodesmium erythraeum IMS101]
Length = 443
Score = 241 bits (614), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 157/431 (36%), Positives = 230/431 (53%), Gaps = 27/431 (6%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
+ DL D + RLVT++V G +R +R LD +I L +K P L IL IG Y++
Sbjct: 31 LKKNDLIDANRRLVTELVYGCVRRQRSLDAIIDQLA--KKKSPQQHPYLRIILHIGLYQL 88
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
L+ +P A VD V LAK VNG+LR+ + + N ++ LP+
Sbjct: 89 SYLEQIPESAAVDTTVELAKQNKFAKLAGFVNGLLREYI--RQNLTINLPE------NPV 140
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRK-GVTRADLVMQLN 279
+ L YS P W+V+ W + LG EA KL W N PS LR N K V ++ M+
Sbjct: 141 QKLGISYSFPNWIVKYWIEELGLTEAEKLCYWFNLSPSIDLRINPLKTSVEEVEIAMK-- 198
Query: 280 LLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSI 339
+ + L + + +R+ + + + EG ++QD SA LV +++PQPG+ I
Sbjct: 199 --NIGISVSRILQVPQALRLNGAVGQIQKLPGYNEGWWSIQDSSAQLVCYLLNPQPGEII 256
Query: 340 VDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF 399
+D CAAPGGKT ++ + G ++AID+ RL+ L + Q+ S I D R
Sbjct: 257 IDACAAPGGKTTHIGELMGDNGKIFAIDMTASRLKKLESNTERLQLKS-ISISRGDSRNL 315
Query: 400 ADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGG 459
+ + D+VLLD PCSGLG L +RAD RW + LE++ EL LQ ELL+ A+ VKPGG
Sbjct: 316 TEFIN-QADRVLLDVPCSGLGTLHRRADARWRKTLENIGELAKLQGELLENAAKWVKPGG 374
Query: 460 VLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPS-DFVT---KHGFFFSDPIKHS 515
VLVY+TC+I P ENE +E FL + E+ I+ P+ DF+ + G+ P +
Sbjct: 375 VLVYATCTIYPLENEGVIEKFLTNNYEWEIE-----APTVDFMVSPCREGWIKIWPHREQ 429
Query: 516 LDGAFAARLVR 526
+DG F +L R
Sbjct: 430 MDGFFMVKLRR 440
>gi|303228540|ref|ZP_07315368.1| ribosomal RNA small subunit methyltransferase B [Veillonella
atypica ACS-134-V-Col7a]
gi|302516787|gb|EFL58701.1| ribosomal RNA small subunit methyltransferase B [Veillonella
atypica ACS-134-V-Col7a]
Length = 452
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 152/477 (31%), Positives = 261/477 (54%), Gaps = 35/477 (7%)
Query: 56 EVSPHRAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLV 115
E++ + +RL+ ++ A +D+ N+KG + Y+ + +L D D R
Sbjct: 3 EIAKNGQKQNIRLLAVK---ALSDI-NRKGAYANIVLQDYILKY------NLSDLDRRFF 52
Query: 116 TDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDE 174
T++V G +R R YLD +I + + + ++++ILR+G Y+I+ +D +P A V+E
Sbjct: 53 TELVYGVVRRRNYLDVIIVHFAN--RPIKKLSSMVVEILRLGVYQIIYMDKVPESAAVNE 110
Query: 175 NVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMV 234
+V+LAK R G VN ILR ++ ++ +S+ + L ND A++ IY+ P+W++
Sbjct: 111 SVKLAKKLTR-GLSGFVNAILRSVI--REQDSIGIEDLAAND---IEAISFIYNIPLWLI 164
Query: 235 RRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQ---VPHELSL 291
W G+++ L W N P + R N+ D+ L +L Q V +
Sbjct: 165 NLWISEFGRDKTEDLCAWFNEQPKLTARINT----ILIDIPQCLTMLNEQGWAVTQDS-- 218
Query: 292 HLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTL 351
+ ++ I + + ++ ++ +G D+++ LV +V+PQPG+ I+DCCAAPGGK++
Sbjct: 219 NYEDIIYINSHRGSLEKSEAFIKGYITFMDKASMLVARLVNPQPGERILDCCAAPGGKSM 278
Query: 352 YMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVL 411
Y+A+ + G + + DI++ ++ ++N A S++ T D D+ D+VL
Sbjct: 279 YIAALMDNVGSLMSCDIHEHKIELMNSNADRLGA-SIVHTKVQDATKLPDSWNSYFDRVL 337
Query: 412 LDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPE 471
+DAPCSGLG+L K+ D+RW ++ + EL LQ +L+ A++ VK G L+YSTC+++ +
Sbjct: 338 VDAPCSGLGILQKKLDMRWRKQESILSELPSLQLAILERAAMTVKEKGYLIYSTCTLNYK 397
Query: 472 ENEERVEAFLLRHPEFSIDPADGLVPSDFVTK--HGFFFSDPIKHSLDGAFAARLVR 526
ENEE VEAFL +H EFSI P V DF K G + P +DG F ++ R
Sbjct: 398 ENEEVVEAFLQKHKEFSIIP----VADDFPLKSNSGMITTYPPTDDMDGFFMVKMQR 450
>gi|81299771|ref|YP_399979.1| sun protein [Synechococcus elongatus PCC 7942]
gi|81168652|gb|ABB56992.1| sun protein [Synechococcus elongatus PCC 7942]
Length = 451
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 168/457 (36%), Positives = 243/457 (53%), Gaps = 36/457 (7%)
Query: 75 GAFADL-LNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLI 133
GAFADL L++ + SG L D RLVT++V G +R +R LD LI
Sbjct: 23 GAFADLALDRHLQRSG-----------------LVGADRRLVTELVYGCVRRQRTLDALI 65
Query: 134 CLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVN 192
LL ++ + P+L +L++G Y++ L+ +P A V E V+LAK G VN
Sbjct: 66 DLLA--QRPAAQQPPVLRTVLQLGLYQLRYLEQIPTAAAVAETVQLAKQLGLGGLSGAVN 123
Query: 193 GILRK-LVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMV 251
ILR+ L ++ + LPLP ALA S P W+V+ W+ LG +EA L
Sbjct: 124 AILRQYLRQSEERDPLPLPS------DPIAALAIHQSFPDWLVQLWSDRLGLDEAEFLCH 177
Query: 252 WNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGL 311
W N PS LR N + R+ +Q L + + L + +R+ + Q
Sbjct: 178 WFNQPPSIDLRINPLR-TERSQ--VQAALEAVGIRSTPDPQLPQALRLIDPPGPIRQLPG 234
Query: 312 LKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKG 371
EG VQD SA L+ +VDPQPG++++D CAAPGGK+ ++A + +G V A D +
Sbjct: 235 FDEGWWMVQDSSAQLIAHLVDPQPGETVLDVCAAPGGKSTHLAELMGDRGQVIACDSSAK 294
Query: 372 RLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWN 431
RLR + E A+ Q++S I T D R ++ D++L+DAPCSGLG L + AD RW
Sbjct: 295 RLRKVQENAQRLQLSS-ITTRAIDGRQI---KGIQADRILVDAPCSGLGTLHRHADGRWR 350
Query: 432 RRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDP 491
+ + + EL LQ E+LDAA+ +KP G LVY+TC++ P ENE +E FL RHP++ + P
Sbjct: 351 QSPDSVAELAQLQSEILDAAAACLKPAGTLVYATCTLHPAENEAVIEQFLQRHPDWQMAP 410
Query: 492 ADGLVP-SDFVTKHGFFFSDPIKHSLDGAFAARLVRA 527
P + +G P +H DG F ARL R+
Sbjct: 411 LAADSPFQAWAEANGTLRIWPHRHDRDGFFGARLQRS 447
>gi|118581643|ref|YP_902893.1| sun protein [Pelobacter propionicus DSM 2379]
gi|118504353|gb|ABL00836.1| sun protein [Pelobacter propionicus DSM 2379]
Length = 452
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 171/474 (36%), Positives = 258/474 (54%), Gaps = 37/474 (7%)
Query: 58 SPHRAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTD 117
+P ++ +V L+RIQ G +AD L + SG L D L +
Sbjct: 10 NPRQSACSV-LLRIQREGCYADQLMDRELESGG----------------LTGPDRGLFAE 52
Query: 118 IVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENV 176
+V G +R + LDH++ L + S +EP L +LR+G Y++V LD +P A V+E+V
Sbjct: 53 LVFGALRRQGTLDHILSSLL--TQPLSRLEPQALILLRVGLYQLVYLDRIPESAAVNESV 110
Query: 177 RLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRR 236
LAK L P A LVN +LR + D+ P P A ++A +SHP+W+VR+
Sbjct: 111 NLAKKTL-PRASGLVNAVLRNYLRRGDDIPFPDPLA-----MPAESIAARHSHPLWLVRQ 164
Query: 237 WTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQ-VPHELSLHLDE 295
W LG EEA L ++ +LRAN+ ++R DL+++ + +Q P S H
Sbjct: 165 WIDQLGVEEAEALAEASSRQAPLALRANT-LAISRDDLLVKFSTNGIQATPCRFSPH--- 220
Query: 296 FIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMAS 355
I V+ G + EGL AVQDE++ + ++DP+PG+ I+D CAAPGGK ++A
Sbjct: 221 GILVE-GRHQITSLPGFHEGLFAVQDEASQMAGLLLDPRPGERILDACAAPGGKATHLAQ 279
Query: 356 CLSGQGLVYAIDINKGRLRILNETAKLHQVN-SVIRTIHADLRTFADNSTVKCDKVLLDA 414
++ +G + A+D++ +L ++ E+A H++ S+IRT ADL A D+VLLDA
Sbjct: 280 LMNDRGELLAMDVSGVKLPLIQESA--HRLGISIIRTRRADLLNSAAFPVDSFDRVLLDA 337
Query: 415 PCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENE 474
PCSGLGV+ + + +W R ED+ L Q + A ++KPGG LVYSTCS EENE
Sbjct: 338 PCSGLGVIRRNPEAKWRLRPEDLTRLAETQRRMFANAVRMLKPGGRLVYSTCSTSREENE 397
Query: 475 ERVEAFLLRHPEFSIDPADGLVP--SDFVTKHGFFFSDPIKHSLDGAFAARLVR 526
+ AFL R ++ + + P S+ T+ G S P H +DG FAARL++
Sbjct: 398 AVLHAFLSRQDGVILEDLNQVYPCWSELFTREGMLRSWPHCHGMDGFFAARLIK 451
>gi|78189086|ref|YP_379424.1| Fmu, rRNA SAM-dependent methyltransferase [Chlorobium
chlorochromatii CaD3]
gi|78171285|gb|ABB28381.1| Fmu, rRNA SAM-dependent methyltransferase [Chlorobium
chlorochromatii CaD3]
Length = 429
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 148/381 (38%), Positives = 211/381 (55%), Gaps = 23/381 (6%)
Query: 114 LVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL-DMPPYAVV 172
L T++V G +RW+ LD I L H + + P+L ILR+G Y+++ L +P +A V
Sbjct: 42 LATELVNGVLRWQLQLDSRISLAYHHK--LEAAAPVLRNILRLGAYQLLFLTKIPRWAAV 99
Query: 173 DENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVW 232
+E V+LA+ LVNG+LR L D + KL R+QA LA +SHP W
Sbjct: 100 NECVKLARKYKGERMAKLVNGVLRHL----DGGNEAFEKLL-QGRSQAEQLALQFSHPAW 154
Query: 233 MVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLH 292
++ RW G+ + +L+ +NN P R N K + D P EL
Sbjct: 155 LIERWLATYGELKTRQLLHYNNQAPMMGFRINRLKADAK-DFFDNPTFAAAMEPCELPYC 213
Query: 293 L--DEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKT 350
EF +T LQ EG+ +VQ+ + L +++P P ++D CAAPGGK
Sbjct: 214 FLSREFSLFETALQ---------EGVLSVQNPTQALAPLLLNPAPQSVVIDLCAAPGGKA 264
Query: 351 LYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKV 410
++MA + QG V A+D + +LR L A+ + ++IRT+ D R+ A N ++ D V
Sbjct: 265 MFMAELMHNQGEVIAVDQYEQKLRKLESHAQALGL-TIIRTVAGDARSVAPN--LQADAV 321
Query: 411 LLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDP 470
LLDAPCSG GV+ +RA+LRW + EL+ LQ ELLD A+ L+KP G LVY+TCSI+P
Sbjct: 322 LLDAPCSGTGVIGRRAELRWKVTPAMVAELQGLQAELLDHAATLLKPQGRLVYATCSIEP 381
Query: 471 EENEERVEAFLLRHPEFSIDP 491
EEN E+V AFL RHP F +P
Sbjct: 382 EENGEQVAAFLQRHPNFVAEP 402
>gi|334118913|ref|ZP_08493001.1| sun protein [Microcoleus vaginatus FGP-2]
gi|333459143|gb|EGK87758.1| sun protein [Microcoleus vaginatus FGP-2]
Length = 449
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 163/468 (34%), Positives = 246/468 (52%), Gaps = 33/468 (7%)
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVG 120
R ++ + L + GAFAD ++R G L+D D RLVT++V
Sbjct: 5 RQIAFLALREVHRRGAFAD--------------AALDRAFG--NSQLNDLDRRLVTELVY 48
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLA 179
G++R R +D +I L K S P L IL +G Y++ L+ +PP A V+ V+LA
Sbjct: 49 GSVRRMRSIDFIIDKLA--TKKSSQQPPELRTILHLGLYQLEYLNQIPPSAAVNTTVQLA 106
Query: 180 KVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTK 239
K G + VNG+LR+ + L DN+ PL N ++ L ++S P W+V+ W +
Sbjct: 107 KENGFSGLSSFVNGLLRQYIRLTDNDLNPL--TVTNYKSTVERLGILHSFPEWLVKLWIE 164
Query: 240 YLGQEEAIKLMVWNNSDPSFSLRANSRKG-VTRADLVMQL-NLLKLQVPHELSLHLDEFI 297
+G+ E +L W N P+ LR N K + + + + N+ ++P+ L + +
Sbjct: 165 QIGETETEQLCEWFNQSPTIDLRINPLKSSIAQIEAAFKTHNISTSRIPN-----LPQAL 219
Query: 298 RVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCL 357
R+ + + EG +QD SA LV ++ QPG++I+D CAAPGGKT + A +
Sbjct: 220 RLNGSIGAIQNLPGYSEGWWTIQDSSAQLVTHILGAQPGETIIDACAAPGGKTTHSAELM 279
Query: 358 SGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIH-ADLRTFADNSTVKCDKVLLDAPC 416
+G +YA D RL+ L E A Q+ S+ IH D R F + + D+VLLDAPC
Sbjct: 280 QDEGTIYACDKTASRLKKLKENADRLQMKSI--KIHTGDSRHFPEFVNL-ADRVLLDAPC 336
Query: 417 SGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEER 476
SGLG L +R D RW E++++ LQ ELL A+ VK GGVLVY+TC+I P ENE
Sbjct: 337 SGLGTLHRRPDARWRHTPENIQQQSQLQSELLANAATFVKSGGVLVYATCTIHPLENETV 396
Query: 477 VEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARL 524
+ +FL +P + I+P +P + G+ P +H +DG F RL
Sbjct: 397 IRSFLDSNPHWQIEPPTIDLPVQ-PSPEGWVKVWPHRHHMDGFFMVRL 443
>gi|374582947|ref|ZP_09656041.1| ribosomal RNA small subunit methyltransferase RsmB
[Desulfosporosinus youngiae DSM 17734]
gi|374419029|gb|EHQ91464.1| ribosomal RNA small subunit methyltransferase RsmB
[Desulfosporosinus youngiae DSM 17734]
Length = 452
Score = 240 bits (612), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 170/474 (35%), Positives = 255/474 (53%), Gaps = 39/474 (8%)
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVG 120
R ++ L R++ GA+A+LL +K + D RD VT +V
Sbjct: 7 RKMAVNMLTRVEAEGAYANLLLQKNS-----------------LRLTDSRDRHFVTLLVN 49
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPPYAV-VDENVRLA 179
GT++ R LD+ L H K SS+ + ILRIG ++I+ LD P AV V+E+V LA
Sbjct: 50 GTLKHRLTLDY--ALRRHLSKPMSSLPHEVRAILRIGAFQILFLDKVPSAVAVNESVELA 107
Query: 180 KVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTK 239
K P LVN +LRK+ ++ + P L+ R R L+ YSHP W+++RW
Sbjct: 108 KEF--PKFTGLVNVVLRKV--MERGWDIDWPDLK---REPVRYLSVRYSHPEWLIQRWLN 160
Query: 240 YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFIRV 299
G EE L NN +R N+ K ++R DL +L + V +L + E +++
Sbjct: 161 RWGIEETEALCKVNNEPSPTWIRTNTLK-ISREDLTERLREEGITV--QLGSRVPESLQI 217
Query: 300 KTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSG 359
+ + Q +EGL VQDES+ LV VV+PQPGQS++D C+APGGK+ ++A +
Sbjct: 218 -SNFGALDQLDSFREGLFTVQDESSQLVAHVVNPQPGQSVLDACSAPGGKSTHLAQMMKN 276
Query: 360 QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGL 419
+G + A DI+ +L ++ + A+ + ++I T D R D VL+DAPCSGL
Sbjct: 277 EGKILAFDIHAHKLELVEQLAQKLGI-TIIETQVGDARDLPGIRLESQDCVLVDAPCSGL 335
Query: 420 GVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEA 479
G++ ++ADLRW + + +++L LQ +L+ A+ VK GG LVYSTC+ +P+EN E V+
Sbjct: 336 GIIRRKADLRWQKEEQGLKDLPALQLAILERAASCVKNGGTLVYSTCTTEPDENFELVKR 395
Query: 480 FLLRHPEFS-IDPADGL-----VPSDFVT-KHGFFFSDPIKHSLDGAFAARLVR 526
F L HPEF +D AD L P D + G P +H +DG F A+ R
Sbjct: 396 FRLSHPEFEPVDLADVLPFILEEPRDVKQGRKGMLQLLPHRHGMDGFFLAKFRR 449
>gi|431794643|ref|YP_007221548.1| ribosomal RNA small subunit methyltransferase RsmB
[Desulfitobacterium dichloroeliminans LMG P-21439]
gi|430784869|gb|AGA70152.1| ribosomal RNA small subunit methyltransferase RsmB
[Desulfitobacterium dichloroeliminans LMG P-21439]
Length = 453
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 172/483 (35%), Positives = 260/483 (53%), Gaps = 56/483 (11%)
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDL-DDRDLRLVTDIV 119
RA++ L RI+ A+A+LL +K DL D RD +L T +V
Sbjct: 7 RALAVRILKRIEEENAYANLLLQKA------------------LHDLADPRDRQLTTLLV 48
Query: 120 GGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRL 178
G+++ R LD+ L H K S + + ILR+ ++I+ L +P A ++E V L
Sbjct: 49 NGSLKNRLTLDY--ALRRHLRKPLSQLPHEVRWILRVSTFQILYLSRIPASAAINEGVEL 106
Query: 179 AKVALRPGA-GNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRW 237
K R G +LVN +LR++ L+ + P +R +R L+ YSHP WMV+RW
Sbjct: 107 TK--RRQGKYTSLVNSVLRRV--LESGWDMEWP---SKEREPSRYLSLRYSHPEWMVKRW 159
Query: 238 TKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV------PHELSL 291
K G EE L NN +R N+ K +TR +LV +L +QV P SL
Sbjct: 160 LKRYGMEETEALCQANNEPAPTWIRTNTLK-ITRDELVERLTNEGVQVTWGERVPE--SL 216
Query: 292 HLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTL 351
+++F ++ + +EGL VQDES+ L+ V++PQ GQ ++D CAAPGGKT
Sbjct: 217 LIEDFGSIE-------RLPSFQEGLFTVQDESSQLIAHVLNPQRGQRVLDVCAAPGGKTT 269
Query: 352 YMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVL 411
++A + +G + A D++ +++I+ E A+ + ++I D R C KVL
Sbjct: 270 HLAQRMENEGEIQAFDLHPHKVKIIEELAQRLGI-TIIHAQAGDARELQGIGNSTCHKVL 328
Query: 412 LDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPE 471
+DAPCSGLGV+ +RAD+RW++ E+++ L LQ LL+ A+ V GG LVYSTC+I+PE
Sbjct: 329 VDAPCSGLGVIRRRADMRWHKTEEEIKSLPELQLALLERAAQCVALGGELVYSTCTIEPE 388
Query: 472 ENEERVEAFLLRHPEF-SIDPADGLVPSDFVTKH-------GFFFSDPIKHSLDGAFAAR 523
EN E ++AF +HPEF ++D +GL P ++ GF P KH +DG F A+
Sbjct: 389 ENFEVIKAFRAQHPEFATVDLVEGL-PYSLDSEQDRKQATKGFLQILPHKHGMDGFFLAK 447
Query: 524 LVR 526
R
Sbjct: 448 FRR 450
>gi|333978754|ref|YP_004516699.1| N utilization substance protein B [Desulfotomaculum kuznetsovii DSM
6115]
gi|333822235|gb|AEG14898.1| N utilization substance protein B-like protein [Desulfotomaculum
kuznetsovii DSM 6115]
Length = 453
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 147/419 (35%), Positives = 230/419 (54%), Gaps = 17/419 (4%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPY 169
D T++ G +R LD L+ + +S P + +LR+G Y+I+ +D +P
Sbjct: 41 DRAFATELAYGVLRRLNTLDWLLGHFL--RQPLASQNPWIRNLLRLGAYQIMYMDRVPDS 98
Query: 170 AVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSH 229
A V+E+ LA+ PGA VNG+LR L + +PLP L+ + A ++ YSH
Sbjct: 99 AAVNESAELARRYGHPGAVGFVNGVLRNLA--RRGRQIPLPDLKDDPVAY---ISLYYSH 153
Query: 230 PVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHEL 289
P W+VRRW K G EE I L NN ++R N+ K ++R +L+ +L + V E
Sbjct: 154 PAWLVRRWLKEYGLEETIALCQANNGPAPNTVRTNTLK-ISRQELMERLG--EEGVTAEP 210
Query: 290 SLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGK 349
+ E +++ G ++ +EGL VQDES+ LV + P PG ++D AAPG K
Sbjct: 211 TSFAPEGLKI-AGFPSLHSFAPFEEGLFLVQDESSILVGHALSPLPGARVLDAAAAPGTK 269
Query: 350 TLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDK 409
T ++A + +G + A+DI+ +++++ + + + +R + AD R ++ + D
Sbjct: 270 TTHLAQLMGDRGEITALDIHPHKIKLIAANCRRLGI-TCVRPVEADARHLDQSTHHQWDF 328
Query: 410 VLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSID 469
+LLDAPCSGLGVL +R D RW + + E+ LQ E+L+ + +KPGGVLVYSTC++
Sbjct: 329 ILLDAPCSGLGVLRRRPDARWRKTEASIAEMAGLQKEMLEGVARCLKPGGVLVYSTCTVT 388
Query: 470 PEENEERVEAFLLRHPEFSIDPADGLVPSDF----VTKHGFFFSDPIKHSLDGAFAARL 524
EEN +VE FL RHPEF ++ L+P+ G+ P +H +DG F ARL
Sbjct: 389 REENLGQVEDFLNRHPEFQLEDLSTLLPAGLDEQGTLSRGYIQLLPHRHGMDGFFMARL 447
>gi|345859751|ref|ZP_08812085.1| transcription antitermination factor NusB [Desulfosporosinus sp.
OT]
gi|344327208|gb|EGW38652.1| transcription antitermination factor NusB [Desulfosporosinus sp.
OT]
Length = 451
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 167/483 (34%), Positives = 254/483 (52%), Gaps = 55/483 (11%)
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVG 120
R ++ L R++ GA+A+LL +K G K D RD + VT +V
Sbjct: 7 RGMAVHMLTRVEVEGAYANLLLQKNVG-----------------KLTDSRDRQFVTLLVN 49
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPPYAV-VDENVRLA 179
G ++ R LD++ L + K S++ + ILRIG ++++ +D P AV V+E+V LA
Sbjct: 50 GALKHRLTLDYV--LRKYLSKPMSALPHEVRAILRIGAFQLLYVDKVPDAVAVNESVELA 107
Query: 180 KVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTK 239
K L P LVN +LRK++ + S P K R R L+ YSHP WM++RW K
Sbjct: 108 K--LFPKYTGLVNVVLRKVMNQGWDFSWPDEK-----RETVRYLSVRYSHPEWMIQRWLK 160
Query: 240 YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFIRV 299
G EE L NN +R N+ K ++R DL+ +L + V E+ + E +R+
Sbjct: 161 RWGLEETEALCRANNESAQTWIRTNTLK-ISREDLMDRLTQEGITV--EVGTRIPESLRI 217
Query: 300 KTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSG 359
+ ++ + EGL VQDES+ LV VV P+PGQ+++D C+APGGKT ++A +
Sbjct: 218 QN-FGSLERVESFCEGLFTVQDESSQLVAHVVAPKPGQNVLDACSAPGGKTTHLAQMMGN 276
Query: 360 QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGL 419
+G + A D++ +L +++ A+ + ++I+ D R +VL+DAPCSGL
Sbjct: 277 EGEILAFDVHAHKLEFIDQLAQRLGI-TIIQPQLGDARDLPGIKLGSQQRVLVDAPCSGL 335
Query: 420 GVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEA 479
GVL +RADLRW + +D+++L LQ +L+ A+ V GG L+YSTC+I+PEEN E V+
Sbjct: 336 GVLRRRADLRWRKEEQDIKDLPQLQLAILERAASCVAVGGDLIYSTCTIEPEENFELVKK 395
Query: 480 FLLRHPEFSIDPADGLVPSDFVTKHGFFFSD---------------PIKHSLDGAFAARL 524
F HPEF P + V F D P +H +DG F A+
Sbjct: 396 FRSEHPEFE--------PVNLVENLPFTLQDSREIQQASKGMLQLLPHRHGMDGFFLAKF 447
Query: 525 VRA 527
R
Sbjct: 448 RRT 450
>gi|126656069|ref|ZP_01727453.1| Fmu, rRNA SAM-dependent methyltransferase [Cyanothece sp. CCY0110]
gi|126622349|gb|EAZ93055.1| Fmu, rRNA SAM-dependent methyltransferase [Cyanothece sp. CCY0110]
Length = 452
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 160/429 (37%), Positives = 223/429 (51%), Gaps = 23/429 (5%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD 165
+L+ D L T +V G +R +R LD LI L +K P L +IL IG Y++ L+
Sbjct: 40 NLNPSDRSLCTQLVYGIVRHQRTLDTLIDQL--GKKKAQQQPPDLRRILHIGLYQLRYLN 97
Query: 166 -MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+PP A V+ +V LAK +VNGILR+ + + PL L N +A
Sbjct: 98 HIPPSAAVNTSVNLAKDYQLNRLSGVVNGILRQYIRKSKESQDPL-ILPSNP---IEKIA 153
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQ 284
YS P WM+ W K G+E KL W N P+ +R N K T L QL +
Sbjct: 154 IQYSFPNWMIETWVKQWGEETTEKLCYWFNQTPTIDIRINPLK-TTLQTLENQLIETGVN 212
Query: 285 V----PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIV 340
V P +L L I L EG +QD SA LV ++DPQPG++I+
Sbjct: 213 VTPLPPFPCTLRLQGKIGTIQTLPG------FHEGHWTIQDSSAQLVSYLLDPQPGETII 266
Query: 341 DCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 400
D CAAPGGKT ++A + QG V A D RL+ + + A+ Q+NS I+TI D R F
Sbjct: 267 DACAAPGGKTTHIAELMGDQGTVIACDRTPSRLKKVQQNAQRLQLNS-IQTILGDSRHFT 325
Query: 401 DNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGV 460
+ D+VL+D PCSGLG L + D+RW + E ++EL LQ E+L A+ VKP G
Sbjct: 326 -QFIDQGDRVLVDVPCSGLGTLHRHPDIRWRQTPEQIQELSRLQQEILTQAAQWVKPQGT 384
Query: 461 LVYSTCSIDPEENEERVEAFLLRHPEFSIDP--ADGLVPSDFVTKHGFFFSDPIKHSLDG 518
LVY+TC+++P EN++ +E FL H ++I+P D L FVT + P +H DG
Sbjct: 385 LVYATCTLNPTENQQIIETFLTHHSHWTIEPPSVDWLF-YPFVTSSKWIQILPHEHHTDG 443
Query: 519 AFAARLVRA 527
F +L +
Sbjct: 444 FFMVKLKKG 452
>gi|172035456|ref|YP_001801957.1| rRNA SAM-dependent methyltransferase [Cyanothece sp. ATCC 51142]
gi|354555546|ref|ZP_08974847.1| sun protein [Cyanothece sp. ATCC 51472]
gi|171696910|gb|ACB49891.1| Fmu, rRNA SAM-dependent methyltransferase [Cyanothece sp. ATCC
51142]
gi|353552605|gb|EHC22000.1| sun protein [Cyanothece sp. ATCC 51472]
Length = 452
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 153/442 (34%), Positives = 230/442 (52%), Gaps = 15/442 (3%)
Query: 90 DNEMGYVERTL--GFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSME 147
D + Y + L F L+ D L T++V G IR +R LD LI L +K
Sbjct: 22 DRKNSYTDIALDRAFNQTHLNPSDRSLCTELVYGIIRHQRTLDTLIDQL--GKKKAKQQP 79
Query: 148 PLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNS 206
P L +IL IG Y++ LD +PP A V+ +V LAK +VNGILR+ + + +
Sbjct: 80 PDLRRILHIGLYQLRYLDNIPPSAAVNTSVNLAKEYKLNRLSGVVNGILRQYLRSSETDG 139
Query: 207 LPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSR 266
PL L N +A YS P WM+ W + G+ +L W N P+ +R N
Sbjct: 140 DPL-ILPPNP---IEKIAIQYSFPDWMIETWVQQWGEATTEQLCHWFNQTPTIDIRINPL 195
Query: 267 KGVTRADLVMQLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGL 326
K +Q L + + L +R++ + ++ +G +QD SA L
Sbjct: 196 KTTLE---TLQTQLTEAGINATPFPPLPCTLRLQGKIGSIQTLPGFHQGHWTIQDSSAQL 252
Query: 327 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVN 386
V ++DPQPG++I+D CAAPGGKT +MA + QG + A D RL+ + + A+ Q+N
Sbjct: 253 VSYLLDPQPGETIIDACAAPGGKTTHMAELMGDQGTIIACDRTPSRLKKVQQNAQRLQLN 312
Query: 387 SVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDE 446
S I+TI D R D+VL+D PCSGLG L + D+RW + E ++EL LQ E
Sbjct: 313 S-IQTILGDSRHLPQLINT-ADRVLVDVPCSGLGTLHRHPDIRWRQTPEKIQELSRLQQE 370
Query: 447 LLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPAD-GLVPSDFVTKHG 505
+L A+ VKP G LVY+TC+++P EN++ +E+FL HP++++ P + S F+T
Sbjct: 371 ILTQAAQWVKPQGTLVYATCTLNPTENQQIIESFLTHHPQWNLKPPSVHWLFSPFMTSSK 430
Query: 506 FFFSDPIKHSLDGAFAARLVRA 527
+ P +H DG F +L +
Sbjct: 431 WIQILPHEHHTDGFFMVKLKKG 452
>gi|374997153|ref|YP_004972652.1| ribosomal RNA small subunit methyltransferase RsmB
[Desulfosporosinus orientis DSM 765]
gi|357215519|gb|AET70137.1| ribosomal RNA small subunit methyltransferase RsmB
[Desulfosporosinus orientis DSM 765]
Length = 452
Score = 239 bits (609), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 170/475 (35%), Positives = 258/475 (54%), Gaps = 41/475 (8%)
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVG 120
R ++ L R++ GA+++LL + +TL R KD RD + VT +V
Sbjct: 7 RGMAVQILTRVEVEGAYSNLL--------------LHKTLA-RLKD--SRDRQFVTLLVN 49
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLA 179
GT++ R LD+ L H K+ S++ + ILRIG ++++ +D +PP A V+E+V LA
Sbjct: 50 GTLKHRLTLDY--ALRRHLSKSMSALPHEVRAILRIGAFQLLFVDKVPPAAAVNESVELA 107
Query: 180 KVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTK 239
K + LVN +LRK++ S P K R R L+ YSHP W+V+RW K
Sbjct: 108 KSFTK--YTGLVNVVLRKVMEKGWAISWPDAK-----REAVRYLSVRYSHPEWLVQRWLK 160
Query: 240 YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFIRV 299
G EE L NN +R N+ K ++R DL +L + V EL + E +R+
Sbjct: 161 RWGSEETEALCRINNEPAPIWIRTNTLK-ISRPDLAERLKEEGITV--ELGARVPESLRI 217
Query: 300 KTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSG 359
+ + Q ++GL VQDES+ LV V PQPGQS++D C+APGGK+ ++A +
Sbjct: 218 Q-DFGALDQLDSFRKGLFTVQDESSQLVAHVAAPQPGQSVLDACSAPGGKSSHLAQIMEN 276
Query: 360 QGLVYAIDINKGRLRILNETAKLHQVN-SVIRTIHADLRTFADNSTVKCDKVLLDAPCSG 418
+G + A DI++ +L ++N+ A H++ ++I D R D VL D PCSG
Sbjct: 277 RGEILAFDIHEHKLELINQLA--HRLGITIIDAQLGDARNLPGIRLESQDCVLADVPCSG 334
Query: 419 LGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVE 478
LGVL ++AD+RW + +D++EL LQ +L+ A+ VK GG L+Y+TC+I+PEEN E V+
Sbjct: 335 LGVLRRKADMRWQKDEKDLQELPSLQWAILERAASCVKKGGTLIYTTCTIEPEENFELVK 394
Query: 479 AFLLRHPEFS-IDPADGLV-----PSDF-VTKHGFFFSDPIKHSLDGAFAARLVR 526
F H EF +D ++ L P D + G P +H +DG F A+ R
Sbjct: 395 KFRTVHSEFEPVDLSNYLPFTLTDPRDIQQARKGMLQLLPHRHEMDGFFLAKFRR 449
>gi|342218721|ref|ZP_08711327.1| ribosomal RNA small subunit methyltransferase B [Megasphaera sp.
UPII 135-E]
gi|341589097|gb|EGS32463.1| ribosomal RNA small subunit methyltransferase B [Megasphaera sp.
UPII 135-E]
Length = 445
Score = 238 bits (608), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 155/422 (36%), Positives = 226/422 (53%), Gaps = 21/422 (4%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L DRD R TD+V GT+R L+ + L + ++PL ILR+G Y++ +D
Sbjct: 34 LADRDRRFYTDLVYGTLRHMMILERAMRKL--SSRPIEKLDPLCRVILRMGLYQLQYMDK 91
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+PP A +E V+LA+ G VN ILR L+ LPK E + LA
Sbjct: 92 VPPSAACNEAVKLARSLGNEGMAKFVNAILRSA--LRQPQVFALPKKEDDP---ILYLAL 146
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLL-KLQ 284
Y W VR + G +E L + + P LR + R +V + +L +
Sbjct: 147 SYHQQEWFVRWCCERFGMKETEDLCAYFDKVPELCLRLQT----NRISIVEGMQILDQAG 202
Query: 285 VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 344
+ + + E I + T Q + LL+EG +QDE++ LV +VDPQPG+ IVD CA
Sbjct: 203 ISYRKGKVVPECIYITTS-QAIESIPLLREGKALIQDEASQLVAHIVDPQPGEIIVDACA 261
Query: 345 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETA-KLHQVNSVIRTIHADLRTFADNS 403
APGGKT ++A+ +VY DI +L+++ E A +L N IRTI D R
Sbjct: 262 APGGKTTHLATLGGKTAIVYGCDIYTHKLKLIEENASRLGLAN--IRTIQQDARQLGQQF 319
Query: 404 TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463
K D+VL+DAPCSGLG+L + DLRW + +D L LQ ++L+ AS+ VK GG+LVY
Sbjct: 320 LAKADRVLVDAPCSGLGILRHKLDLRWRKEEKDTRILPALQKQILEGASVCVKDGGLLVY 379
Query: 464 STCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSD-PIKHSLDGAFAA 522
STC+++P EN++ V+ FL RHPEF+++P + + +TK G P +DG F A
Sbjct: 380 STCTMNPAENQDVVQYFLQRHPEFTLEP---IALTAGLTKKGPCVEIVPPYDGMDGFFIA 436
Query: 523 RL 524
+L
Sbjct: 437 KL 438
>gi|402833087|ref|ZP_10881709.1| ribosomal RNA small subunit methyltransferase B [Selenomonas sp.
CM52]
gi|402281454|gb|EJU30089.1| ribosomal RNA small subunit methyltransferase B [Selenomonas sp.
CM52]
Length = 443
Score = 238 bits (608), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 155/435 (35%), Positives = 237/435 (54%), Gaps = 32/435 (7%)
Query: 102 FRTKDLDDRDLRLVTDIV------GGTIRW--RRYLDHLICLLCHDEKTFSSMEPLLLQI 153
R L + D R T++V GGT+ W RRYL+ + S + P++ I
Sbjct: 30 LRAAKLSEVDRRFATELVYGAAKAGGTLDWILRRYLN----------RPLSKIPPMVRDI 79
Query: 154 LRIGFYEIVKL-DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKL 212
LR+G Y++ L +P A + V + K G VN +LR + + P K
Sbjct: 80 LRLGIYQLFFLARVPASAACNTAVEMTKRCSHAGTVKFVNAVLRTAAREPEKATFPTGKA 139
Query: 213 EGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRA 272
+A LA HP W+VRRW + G EEA L ++N+ + SLR N+ K +TR
Sbjct: 140 H-----EAENLALSLQHPEWLVRRWIRQFGYEEARALCEFDNAQATLSLRTNTLK-ITRD 193
Query: 273 DLVMQLNLLKLQVPHELSLHLDEFIR-VKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVV 331
L+ +L+ K V E S E I ++ G + +++ L++GL VQDES+ LV ++
Sbjct: 194 KLLERLS--KEGVEAEPSAWTPEGILCLRHGSLDALES--LQQGLFQVQDESSMLVAHIL 249
Query: 332 DPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRT 391
P+PG+ ++D C+APGGKT ++A+ + +G + A+D+++ ++R + E + + SV
Sbjct: 250 APEPGEFVLDVCSAPGGKTTHIAASMGDRGRIVALDVHEHKMRRIAENCERLGIKSV-EP 308
Query: 392 IHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAA 451
+ D R + + D+VL+DAPCSGLGVL ++ D RW +R +D+ L LQ E+L +A
Sbjct: 309 LLLDAREAGRRFSRQADRVLVDAPCSGLGVLRRKPDARWRKRPDDLAALARLQREILSSA 368
Query: 452 SLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDP 511
+ VK GGVLVYSTC+I+ EENE VE FL RH EFS++ A L+P + P
Sbjct: 369 AEAVKSGGVLVYSTCTIEREENEAVVEDFLARHEEFSLENAGELLPLKKRPERMLQLY-P 427
Query: 512 IKHSLDGAFAARLVR 526
+ DG F AR+ R
Sbjct: 428 QRDGTDGFFIARMRR 442
>gi|257058561|ref|YP_003136449.1| sun protein [Cyanothece sp. PCC 8802]
gi|256588727|gb|ACU99613.1| sun protein [Cyanothece sp. PCC 8802]
Length = 451
Score = 238 bits (608), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 170/480 (35%), Positives = 248/480 (51%), Gaps = 42/480 (8%)
Query: 56 EVSPHRAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLV 115
+++ R ++ V L I+ G F D+ ++R G ++ DL D LV
Sbjct: 6 QITHARPLALVILREIERRGTFTDI--------------AIDR--GLKSTDLSGSDRALV 49
Query: 116 TDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL-DMPPYAVVDE 174
T++V G +R +R LD LI L +K P L IL IG Y++ L +PP A V+
Sbjct: 50 TELVYGIVRRKRTLDTLIDQL--GKKASHQQPPDLRLILYIGLYQLRYLSQIPPSAAVNT 107
Query: 175 NVRLAKVALRPGAGNLVNGILRKLVLL--KDNNSLPLPKLEGNDRAQARALATIYSHPVW 232
V LAK +VNGILR+ + L ++N+ L LP D +R L +YS P +
Sbjct: 108 AVNLAKENSLQRLSGVVNGILRQYIRLAQENNDPLILP-----DDPISR-LGVLYSFPDF 161
Query: 233 MVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGV---TRADLVM-QLNLLKLQVPHE 288
M++ W + G E +L W N P +R N K + L L L+ L++P
Sbjct: 162 MIKLWLEQWGLETTEELCNWFNQPPVLDIRINPLKTTLEEVKTTLSQGNLTLMPLEIPQG 221
Query: 289 LSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGG 348
L L + KTG + KEG VQD SA LV ++DPQP + I+D CAAPGG
Sbjct: 222 LRL------QGKTGAIQDLPG--FKEGWWTVQDSSAQLVSHLLDPQPSEVIIDACAAPGG 273
Query: 349 KTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCD 408
KT ++A + QG ++A D RL+ L+ + Q+NS I+ + D R D D
Sbjct: 274 KTTHIAELMGDQGTIWACDRYASRLKKLSANKERLQLNS-IKIVTGDSRQL-DQFQGIAD 331
Query: 409 KVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSI 468
+VL+DAPCSGLG L + D+RW + E +EEL ILQ ELL+ + VKP G+LVY+TC++
Sbjct: 332 RVLVDAPCSGLGTLHRHPDIRWRQTPEKIEELAILQKELLETTANWVKPQGILVYATCTL 391
Query: 469 DPEENEERVEAFLLRHPEFSID-PADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARLVRA 527
+ENE +E FL HP + ID P+ + ++T G P + +DG F +L +
Sbjct: 392 TYQENEGVIEHFLASHPHWKIDVPSPDSPAAKWMTASGAIKILPHQQDMDGFFMVKLKKG 451
>gi|443310715|ref|ZP_21040357.1| ribosomal RNA small subunit methyltransferase RsmB [Synechocystis
sp. PCC 7509]
gi|442779240|gb|ELR89491.1| ribosomal RNA small subunit methyltransferase RsmB [Synechocystis
sp. PCC 7509]
Length = 446
Score = 238 bits (607), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 153/436 (35%), Positives = 229/436 (52%), Gaps = 19/436 (4%)
Query: 96 VERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILR 155
+ER L DLD R LVT++V G++R R LD LI L K PLL IL
Sbjct: 25 LERVLS--KNDLDPRSRGLVTELVYGSVRQMRLLDTLIDQLA--SKKADKQPPLLRTILH 80
Query: 156 IGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEG 214
+G Y++ L +PP A V+ V LAK G VNG+LR+ + + + PL +L
Sbjct: 81 LGLYQLRYLSHIPPSAAVNTTVELAKKNGLSGLSGFVNGVLRQYLRIAETGIDPL-QLPE 139
Query: 215 NDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSR-KGVTRAD 273
N + L ++S+P W++ W + G +L W N P LR N + + +
Sbjct: 140 NPTER---LGILHSYPDWIIDVWLEQFGFTATEQLCQWLNQPPKLDLRVNPLLSSIEKVE 196
Query: 274 LVMQLNLLKL-QVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVD 332
+Q + + +VP+ L + +R+ + +G VQD SA LV ++D
Sbjct: 197 TALQETGIDVSRVPY-----LPQALRINGSTGAIQNLPGFNDGWWTVQDSSAQLVSHLLD 251
Query: 333 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTI 392
PQ G+ I+D CAAPGGKT ++A + QG ++A D RLR L + K Q+ S+ +
Sbjct: 252 PQSGEFIIDACAAPGGKTTHIAELMGDQGTIWACDRTASRLRKLQQNTKRLQLKSIQIQV 311
Query: 393 HADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAAS 452
D R F + KCD++LLD PCSGLG L++ AD RW + + ++EL +LQ EL+ +
Sbjct: 312 -GDSRHF-EQFIDKCDRLLLDVPCSGLGTLNRHADARWRQTPQSIQELSLLQAELISQGA 369
Query: 453 LLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPS-DFVTKHGFFFSDP 511
L VKPGGV+VYSTC++ P+ENE + FL ++ + I+P P F G+ P
Sbjct: 370 LFVKPGGVMVYSTCTLHPQENENIIANFLAQNTNWQIEPPAPNSPCFTFAKPAGWIKVLP 429
Query: 512 IKHSLDGAFAARLVRA 527
+ +DG F RL ++
Sbjct: 430 YQDLMDGFFMVRLRKS 445
>gi|218245524|ref|YP_002370895.1| sun protein [Cyanothece sp. PCC 8801]
gi|218166002|gb|ACK64739.1| sun protein [Cyanothece sp. PCC 8801]
Length = 451
Score = 238 bits (607), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 170/480 (35%), Positives = 248/480 (51%), Gaps = 42/480 (8%)
Query: 56 EVSPHRAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLV 115
+++ R ++ V L I+ G F D+ ++R G ++ DL D LV
Sbjct: 6 QITHARPLALVILREIERRGTFTDI--------------AIDR--GLKSTDLSGSDRALV 49
Query: 116 TDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL-DMPPYAVVDE 174
T++V G +R +R LD LI L +K P L IL IG Y++ L +PP A V+
Sbjct: 50 TELVYGIVRRKRTLDTLIDQL--GKKASHQQPPDLRLILYIGLYQLRYLSQIPPSAAVNT 107
Query: 175 NVRLAKVALRPGAGNLVNGILRKLVLL--KDNNSLPLPKLEGNDRAQARALATIYSHPVW 232
V LAK +VNGILR+ + L ++N+ L LP D +R L +YS P +
Sbjct: 108 AVNLAKENSLQRLSGVVNGILRQYIRLAQENNDPLILP-----DDPISR-LGVLYSFPDF 161
Query: 233 MVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGV---TRADLVM-QLNLLKLQVPHE 288
M++ W + G E +L W N P +R N K + L L L+ L++P
Sbjct: 162 MIKLWLEQWGLETTEELCNWFNQPPVLDIRINPLKTTLEEVKTTLSQGNLTLMPLEIPQG 221
Query: 289 LSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGG 348
L L + KTG + KEG VQD SA LV ++DPQP + I+D CAAPGG
Sbjct: 222 LRL------QGKTGAIQDLPG--FKEGWWTVQDSSAQLVSHLLDPQPSEVIIDACAAPGG 273
Query: 349 KTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCD 408
KT ++A + QG ++A D RL+ L+ + Q+NS I+ + D R D D
Sbjct: 274 KTTHIAELMGDQGTIWACDRYASRLKKLSANKERLQLNS-IKIVTGDSRQL-DQFQGIAD 331
Query: 409 KVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSI 468
+VL+DAPCSGLG L + D+RW + E +EEL ILQ ELL+ + VKP G+LVY+TC++
Sbjct: 332 RVLVDAPCSGLGTLHRHPDIRWRQTPEKIEELAILQKELLETTANWVKPQGILVYATCTL 391
Query: 469 DPEENEERVEAFLLRHPEFSID-PADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARLVRA 527
+ENE +E FL HP + ID P+ + ++T G P + +DG F +L +
Sbjct: 392 TYQENEGVIEHFLASHPHWKIDVPSPNSPVAKWMTASGSIKILPHQQDMDGFFMVKLKKG 451
>gi|452992003|emb|CCQ96625.1| Ribosomal RNA small subunit methyltransferase B [Clostridium
ultunense Esp]
Length = 453
Score = 238 bits (607), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 160/466 (34%), Positives = 251/466 (53%), Gaps = 41/466 (8%)
Query: 68 LMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRR 127
L+RI+ GA+++LL + ++R+ G R D D RL T++V G + R
Sbjct: 17 LLRIEEEGAYSNLLLRTA----------LDRS-GMR-----DADKRLATELVYGVLTHRL 60
Query: 128 YLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPG 186
LD+ I + + +EP + +LR+ FY+++ LD +PPYA+V+E V+ AK G
Sbjct: 61 RLDYAIR--PYLSRPLEKLEPWVRLLLRLSFYQLLYLDKIPPYAIVNEAVKSAKRRGHEG 118
Query: 187 AGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEA 246
L+NG+LR + +P D AR L+ +YSHP WMV+RW K G+E+
Sbjct: 119 IARLINGVLRSYLREPTKGEIP------PDLPPARRLSLLYSHPEWMVKRWLKQYGEEKT 172
Query: 247 IKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQ-VPHELSLHLDEFIRVKTGLQN 305
++ NN+ +LR N + TR +L+ L+ +P LS + IRV TG N
Sbjct: 173 EAMLSANNAPSPLTLRINPLR-TTREELLSFFKEEGLEAMPSLLS---PQGIRV-TGGGN 227
Query: 306 VIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYA 365
+ GL ++QDES+ LV ++ P+ GQ ++D CAAPGGKT ++A + +G + A
Sbjct: 228 PAAMPEYRLGLYSIQDESSMLVATLLKPEAGQRVLDACAAPGGKTSHIAELMKDEGEILA 287
Query: 366 IDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKR 425
DI+ + ++ E K S I+ + D T + D++L+DAPCSGLGV+ ++
Sbjct: 288 NDIHPHKGSLIEEQKKRLGFTS-IQVMTGDALTLPERVKGPFDRILIDAPCSGLGVIRRK 346
Query: 426 ADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHP 485
+++W + ++ L LQ LL+ S L+ G+L+YSTC+++PEENEE ++ FL HP
Sbjct: 347 PEIKWRKEERELSHLPELQYALLERLSPLLGEKGLLIYSTCTVNPEENEEVIDRFLSSHP 406
Query: 486 EFSIDPADGLV---PS----DFVTKHGFFFSDPIKHSLDGAFAARL 524
EF P + LV PS + + + G P DG F ARL
Sbjct: 407 EFQ--PDESLVNDLPSPLLKEAIIRPGMLLILPGDFGTDGFFIARL 450
>gi|416406060|ref|ZP_11688032.1| Ribosomal RNA small subunit methyltransferase B [Crocosphaera
watsonii WH 0003]
gi|357261147|gb|EHJ10449.1| Ribosomal RNA small subunit methyltransferase B [Crocosphaera
watsonii WH 0003]
Length = 452
Score = 238 bits (607), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 159/445 (35%), Positives = 228/445 (51%), Gaps = 21/445 (4%)
Query: 90 DNEMGYVERTL--GFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSME 147
D + Y + L +L D L T++V G IR +R LD LI L +K
Sbjct: 22 DRKNSYTDVALNRALNQSNLSSSDRSLCTELVYGIIRHQRTLDSLIDQL--GKKKAQQQP 79
Query: 148 PLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNS 206
P L +IL IG Y++ LD +PP A V+ +V LAK +VNGILR+ + N
Sbjct: 80 PNLRRILHIGLYQLRYLDHIPPSAAVNTSVDLAKDNKLQRLSGVVNGILRQYIRSTQGNH 139
Query: 207 LPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSR 266
PL + ND + LA YS P W++ W + G+E K+ W N P+ +R N
Sbjct: 140 DPL--ILPNDTL--KKLAIQYSFPDWIIETWLQKWGEETTEKMCHWFNQSPNIDIRVNPL 195
Query: 267 KGVTRADLVMQLNLLKLQVPHELSLHLDEF---IRVKTGLQNVIQAGLLKEGLCAVQDES 323
K L QL + V L F +R+K + + +G VQD S
Sbjct: 196 K-TNLETLQTQLTSAGVNV-----TPLGRFPCALRLKGKIGTIPTLPGFSQGHWTVQDTS 249
Query: 324 AGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLH 383
A LV +DPQPG++I+D CAAPGGKT ++A + QG ++A D RL+ + E A+
Sbjct: 250 AQLVSYFLDPQPGETIIDACAAPGGKTTHIAELMGDQGTIFACDRTPSRLKKVQENAQRL 309
Query: 384 QVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKIL 443
++N I T+ D R + K D+VL+D PCSGLG L + D+RW + E++ EL L
Sbjct: 310 ELN-CIETVVGDSR-YLQQFINKGDRVLVDVPCSGLGTLHRHPDIRWRQTPENIRELTSL 367
Query: 444 QDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPAD-GLVPSDFVT 502
Q E+L+ A+ VKP G LVYSTC+++P EN+E ++ FL H + I+P + S FVT
Sbjct: 368 QLEILNQAAQWVKPQGTLVYSTCTLNPPENQEIIQTFLSTHSHWKIEPPNPHWAFSPFVT 427
Query: 503 KHGFFFSDPIKHSLDGAFAARLVRA 527
+ P K DG F +L +
Sbjct: 428 SSQWIQMLPHKQDSDGFFMVKLKKG 452
>gi|333371233|ref|ZP_08463192.1| RNA methyltransferase Sun [Desmospora sp. 8437]
gi|332976420|gb|EGK13268.1| RNA methyltransferase Sun [Desmospora sp. 8437]
Length = 453
Score = 238 bits (606), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 151/428 (35%), Positives = 238/428 (55%), Gaps = 22/428 (5%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L RD L T++V GT++ + LD ++ L K +++P + +LR+G Y++ LD
Sbjct: 38 LSPRDRGLATELVYGTLQRKNTLDWILNKLVR--KGIDTLDPWVRHLLRLGIYQLRYLDR 95
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A V E V +AK G LVNG+LR + +LP + LA
Sbjct: 96 VPSRAAVHETVEIAKARGHRGIPGLVNGVLRSYLRRGREWTLP------DSPKSVTDLAL 149
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKG-VTRADLVMQLNLLKLQ 284
+ SHP W+VRR + G E A ++ NN P S+R N +G R ++Q +L+
Sbjct: 150 VTSHPEWLVRRLVEVYGPETAHSVLKANNRPPGLSVRVNPLRGNRERVARLLQEEDPRLR 209
Query: 285 VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 344
+ LS + + + G N L +EG VQDES+ LV ++ P+PG+ ++D CA
Sbjct: 210 I--RLSPLSGQGLILTGG--NPASGRLFREGWFTVQDESSMLVAELLAPRPGERVLDGCA 265
Query: 345 APGGKTLYMASCLSGQGLVYAIDINKGRLRIL-NETAKLHQVNSVIRTIHADLRTFADNS 403
APGGKT ++A + +G + A DI+ +++++ N+ +L S++ ADLR
Sbjct: 266 APGGKTGHLAERMENRGTLLACDIHPHKVKLIENQVRRLGL--SMVEVRQADLRELPGTG 323
Query: 404 TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463
+ D+VLLDAPCSG GV+ ++ D++W++ L++++ L+ LQ ELL+AA+ LV PGG LVY
Sbjct: 324 EARFDRVLLDAPCSGWGVIRRKPDIKWSKNLQEVDSLRQLQAELLEAAARLVTPGGTLVY 383
Query: 464 STCSIDPEENEERVEAFLLRHPEFSIDPA--DGL---VPSDFVTKHGFFFSDPIKHSLDG 518
STC+++P+EN E++ AFL +HP F D D L V +T G+ P DG
Sbjct: 384 STCTLEPQENREQITAFLKKHPTFQADSTLFDTLPAPVREKALTGDGWVQILPHHFESDG 443
Query: 519 AFAARLVR 526
F AR+++
Sbjct: 444 FFIARMIK 451
>gi|443323050|ref|ZP_21052061.1| ribosomal RNA small subunit methyltransferase RsmB [Gloeocapsa sp.
PCC 73106]
gi|442787231|gb|ELR96953.1| ribosomal RNA small subunit methyltransferase RsmB [Gloeocapsa sp.
PCC 73106]
Length = 451
Score = 238 bits (606), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 172/477 (36%), Positives = 252/477 (52%), Gaps = 48/477 (10%)
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVG 120
R ++ + L +I GA++D+ +ER L ++DL + LV ++V
Sbjct: 10 RELAFLALRQIYHRGAYSDIA--------------LERVLN--SRDLSPKAKNLVCELVY 53
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPPYAV-VDENVRLA 179
G +R +RYLD LI L +K P L IL +G Y++ L+ A+ V +V LA
Sbjct: 54 GVVRRQRYLDALIDQL--GQKKAQQQPPDLRIILHLGLYQLCYLEKIIGAIAVSSSVELA 111
Query: 180 KVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTK 239
K G +VNG+LR + +N L LP +D Q L ++S P W+V W
Sbjct: 112 KKFGLTGLSGVVNGLLRSYQ--RSHNPLVLP----DDPVQR--LGILHSFPDWIVANWLD 163
Query: 240 YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRAD-----LVMQ-LNLLKLQ-VPHELSLH 292
LG EE +L W N PS LR N K T D L+ Q L + KL+ VP L
Sbjct: 164 VLGLEETTQLCQWFNQSPSLDLRVNILK--TSVDKMATILIEQGLAVTKLETVPQGL--- 218
Query: 293 LDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLY 352
R+ ++ Q +G VQD SA LV ++DPQPG+ I+D CAAPGGKT +
Sbjct: 219 -----RINGPRGSIQQLPGYDQGWWVVQDSSAQLVTHLLDPQPGEKIIDACAAPGGKTTH 273
Query: 353 MASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 412
+A + G V+AID + RL+ + E Q+NS+ ++H L + +CD+VL+
Sbjct: 274 IAELMGDVGEVWAIDRSFKRLKKVQENLDRLQLNSI--SLH-HLDSSTSELPQECDRVLV 330
Query: 413 DAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEE 472
DAPCSG G L KR DLRW + E++ L LQ ++L+ A+ VKPGG LVY+TC+++P E
Sbjct: 331 DAPCSGNGTLHKRPDLRWRQTPEEIPNLVALQRQILNQAATWVKPGGKLVYATCTLNPPE 390
Query: 473 NEERVEAFLLRHPEFSI-DPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARLVRAF 528
NE+ +++FL H ++SI P+ S FVT G+ P + +DG F RL + +
Sbjct: 391 NEDIIQSFLANHSQWSILPPSPDSFLSLFVTPEGWIKIWPHRQQMDGFFMVRLEKCY 447
>gi|89895438|ref|YP_518925.1| hypothetical protein DSY2692 [Desulfitobacterium hafniense Y51]
gi|89334886|dbj|BAE84481.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 453
Score = 238 bits (606), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 166/481 (34%), Positives = 252/481 (52%), Gaps = 52/481 (10%)
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDD-RDLRLVTDIV 119
RA++ L RI+ A+A+L+ +K DL D R+ +L T +V
Sbjct: 7 RALAVQILQRIEEEKAYANLVMQKS------------------LHDLSDPRERQLTTLLV 48
Query: 120 GGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPPYAV-VDENVRL 178
GT++ R LD+ L H K S + + ILRI +++ L P AV ++E V L
Sbjct: 49 NGTLKHRLTLDY--ALRRHLRKPLSQLPREVRWILRISALQVLYLSRIPAAVAINEGVEL 106
Query: 179 AKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWT 238
K + +LVN +LR++ L+ + P ++ R L+ YSHP WMV+RW
Sbjct: 107 TK-KQQGKYTSLVNSVLRRV--LETGWEMLWP---SQEKEPVRYLSLRYSHPEWMVKRWL 160
Query: 239 KYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLN------LLKLQVPHELSLH 292
K G + L NN +R N+ K ++RADL +L + +VP SL
Sbjct: 161 KRYGMADTEALCQANNEPAPVWIRTNTLK-ISRADLQARLEEEGVKVTIGERVPE--SLM 217
Query: 293 LDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLY 352
++EF ++ Q +EGL VQDES+ L+ V++PQ GQ ++D C APGGKT +
Sbjct: 218 IEEF-------GSLDQLPSFQEGLFTVQDESSQLIAHVLNPQAGQKVLDACGAPGGKTTH 270
Query: 353 MASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 412
+A + QG + A DI+ +++++ + A + ++IR D R A C KVL+
Sbjct: 271 LAQRMENQGEILAFDIHPHKVKLIEDLAARLGI-TIIRAQAGDARELAGVKDASCHKVLV 329
Query: 413 DAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEE 472
DAPCSGLGVL +RAD+RW++ ++++ L LQ +L+ A+ V GG LVYSTC+I+PEE
Sbjct: 330 DAPCSGLGVLRRRADMRWHKEEDEIKTLPALQLAILERAAQCVAAGGELVYSTCTIEPEE 389
Query: 473 NEERVEAFLLRHPEFSIDPADGLVPSDFVTKH-------GFFFSDPIKHSLDGAFAARLV 525
N E V+AF +HPEF+ G +P ++ GF P K +DG F A+
Sbjct: 390 NFEVVKAFRAKHPEFTTVDLSGELPYSLASEQDRKQAAKGFLQILPHKQGMDGFFLAKFR 449
Query: 526 R 526
R
Sbjct: 450 R 450
>gi|366166732|ref|ZP_09466487.1| 16S rRNA methyltransferase B [Acetivibrio cellulolyticus CD2]
Length = 450
Score = 238 bits (606), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 148/450 (32%), Positives = 246/450 (54%), Gaps = 26/450 (5%)
Query: 81 LNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDE 140
+NK G S Y+E K L D +T++V GT++WR +D++I +
Sbjct: 17 INKSGAYSNIALNKYLE------DKALSGLDKAFITELVYGTLKWRLSIDYIIDQFSSVK 70
Query: 141 KTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLV 199
+ + P +L ILR+G Y+IV + +P A +E+V LAK + VN +LR +
Sbjct: 71 --INKLSPWILNILRLGVYQIVYMSKIPESAACNESVNLAKRYGHSASSRYVNAMLRNVA 128
Query: 200 LLKDNNSLPLPKLEGNDRAQ--ARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDP 257
+ N + P DR + L+ YSHP WMV++W G+ +L+ NN
Sbjct: 129 --RSKNKIVYP-----DRNKDLISYLSIKYSHPDWMVKKWLDRFGESFTEELLKSNNETA 181
Query: 258 SFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLC 317
++R NS K TR +L + L K E + +++ + + +K G
Sbjct: 182 PLTVRVNSLK-TTREEL--ENTLKKEGFETESAKYIENALTINNPSSLTKMEAFVK-GFF 237
Query: 318 AVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILN 377
VQDES+ +V + DP+PG+ IVD C+APGGKT ++A + +G + A DI++ ++R++N
Sbjct: 238 QVQDESSMMVGRIFDPKPGEFIVDVCSAPGGKTTHIAELMGNRGQIIARDIHEHKIRLIN 297
Query: 378 ETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDM 437
E + ++ +I+ D + T K D+VL+DAPC+GLG++ ++ D++W R D+
Sbjct: 298 EASSRLGID-IIKAEIFDASEQDASLTDKADRVLVDAPCTGLGIIRRKPDIKWARNSNDL 356
Query: 438 EELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVP 497
E+ LQ+++L+A+S VKPGGVLVYSTC+I+P+ENEE V+ FL + E++++ +P
Sbjct: 357 NEIVKLQEKILNASSKYVKPGGVLVYSTCTIEPQENEEMVKKFLKDNKEYTMEDISKQLP 416
Query: 498 SDFV---TKHGFFFSDPIKHSLDGAFAARL 524
V TK G+ + +DG F +++
Sbjct: 417 DGLVKDTTKDGYIQLYTNRDGIDGFFISKM 446
>gi|194336038|ref|YP_002017832.1| sun protein [Pelodictyon phaeoclathratiforme BU-1]
gi|194308515|gb|ACF43215.1| sun protein [Pelodictyon phaeoclathratiforme BU-1]
Length = 445
Score = 237 bits (605), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 158/453 (34%), Positives = 240/453 (52%), Gaps = 33/453 (7%)
Query: 83 KKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKT 142
+ GK D + R+L T + DR L T +V G +R+R LD +I H +
Sbjct: 16 ETGKQQSDT---LLHRSLHHSTLNRADRALS--TGLVNGVLRYRLQLDFVIAQFYHHK-- 68
Query: 143 FSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLL 201
P++ ILR+G Y+I+ L+ +P +A V+E V+LA+ LVNG+LRK+
Sbjct: 69 LEKAAPIMKNILRLGVYQILFLNKVPDWAAVNECVKLARKYKGERMSKLVNGVLRKIT-- 126
Query: 202 KDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSL 261
S+ L + ++ LA YSHP W+V RW+ G E++ L+ +NN PSF
Sbjct: 127 --PESVTLDEWL-KEKKNEEQLAVKYSHPQWLVERWSAAYGNEKSEALLSYNNQFPSFGF 183
Query: 262 RANSRK---GVTRADLVMQLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCA 318
R N K G +D M V HE S +D K N + ++ +G
Sbjct: 184 RINRLKNSAGRFFSDPAMA------AVMHEES-GIDNIFLSKDF--NAFEPAVI-DGRLT 233
Query: 319 VQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNE 378
VQ+ + L ++ P PG +++D CAAPGGK +MA + +G + A+D + +L +
Sbjct: 234 VQNPTQALACLLLHPAPGSNVLDLCAAPGGKATFMAELMENRGQITAVDRYEQKLEKIES 293
Query: 379 TAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDME 438
A+ + ++I+T+ D R+F + D +LLDAPC+G GVL +RA+LRW E ++
Sbjct: 294 HAEALGI-TIIKTVMEDARSFM--PEIHPDAILLDAPCTGTGVLGRRAELRWKLNPEMLQ 350
Query: 439 ELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPS 498
EL +LQ ELLD A+ L+ G+LVY+TCSI+PEEN ++ +FL RHP+F DP +P
Sbjct: 351 ELLVLQAELLDHAAELLDENGILVYATCSIEPEENNLQIYSFLRRHPDFIADPVGEHLPE 410
Query: 499 DFVTKH---GFFFSDPIKH-SLDGAFAARLVRA 527
F + G + P +H DG F RL +A
Sbjct: 411 QFRQSNEGCGAILTLPGEHPGFDGGFCQRLRKA 443
>gi|67924848|ref|ZP_00518244.1| Fmu, rRNA SAM-dependent methyltransferase [Crocosphaera watsonii WH
8501]
gi|67853307|gb|EAM48670.1| Fmu, rRNA SAM-dependent methyltransferase [Crocosphaera watsonii WH
8501]
Length = 452
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 159/445 (35%), Positives = 228/445 (51%), Gaps = 21/445 (4%)
Query: 90 DNEMGYVERTL--GFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSME 147
D + Y + L +L D L T++V G IR +R LD LI L +K
Sbjct: 22 DRKNSYTDVALNRALNQSNLSSSDRSLCTELVYGIIRHQRTLDSLIDQL--GKKKAQQQP 79
Query: 148 PLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNS 206
P L +IL IG Y++ LD +PP A V+ +V LAK +VNGILR+ + N
Sbjct: 80 PNLRRILHIGLYQLRYLDHIPPSAAVNTSVDLAKDNKLQRLSGVVNGILRQYIRSIQGNH 139
Query: 207 LPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSR 266
PL + ND + LA YS P W++ W + G+E K+ W N P+ +R N
Sbjct: 140 DPL--ILPNDTL--KKLAIQYSFPDWIIETWLQKWGEETTEKMCHWFNQSPNIDIRVNPL 195
Query: 267 KGVTRADLVMQLNLLKLQVPHELSLHLDEF---IRVKTGLQNVIQAGLLKEGLCAVQDES 323
K L QL + V L F +R+K + + +G VQD S
Sbjct: 196 K-TNLETLQTQLTSAGVNV-----TPLGRFPCALRLKGKIGTIPTLPGFSQGHWTVQDTS 249
Query: 324 AGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLH 383
A LV +DPQPG++I+D CAAPGGKT ++A + QG ++A D RL+ + E A+
Sbjct: 250 AQLVSYFLDPQPGETIIDACAAPGGKTTHIAELMGDQGTIFACDRTPSRLKKVQENAQRL 309
Query: 384 QVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKIL 443
++N I T+ D R + K D+VL+D PCSGLG L + D+RW + E++ EL L
Sbjct: 310 ELN-CIETVVGDSR-YLQQFINKGDRVLVDVPCSGLGTLHRHPDIRWRQTPENIRELTSL 367
Query: 444 QDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPAD-GLVPSDFVT 502
Q E+L+ A+ VKP G LVYSTC+++P EN+E ++ FL H + I+P + S FVT
Sbjct: 368 QLEILNQAAQWVKPQGTLVYSTCTLNPPENQEIIQTFLSTHSHWKIEPPNPHWAFSPFVT 427
Query: 503 KHGFFFSDPIKHSLDGAFAARLVRA 527
+ P K DG F +L +
Sbjct: 428 SSQWIQMLPHKQDSDGFFMVKLKKG 452
>gi|392426904|ref|YP_006467898.1| ribosomal RNA small subunit methyltransferase RsmB
[Desulfosporosinus acidiphilus SJ4]
gi|391356867|gb|AFM42566.1| ribosomal RNA small subunit methyltransferase RsmB
[Desulfosporosinus acidiphilus SJ4]
Length = 452
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 167/475 (35%), Positives = 257/475 (54%), Gaps = 41/475 (8%)
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVG 120
R ++A L R++ GA+A+LL ++RTL K D R+ + +T +V
Sbjct: 7 RGMAAQILTRVEVEGAYANLL--------------LQRTLA---KLSDPRERQFITLLVN 49
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPPYAV-VDENVRLA 179
G ++ + LD+ + L H K S++ + ILRIG ++++ +D P AV V+E+V LA
Sbjct: 50 GVLKNKLTLDYALRL--HLSKPMSALPHEIRAILRIGAFQLLFVDRVPMAVAVNESVELA 107
Query: 180 KVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTK 239
K P LVN +LRK++ N S P K R R L+ YSHP WM++RW K
Sbjct: 108 KSF--PKFTGLVNVVLRKVLANGWNISWPDAK-----RETVRYLSVRYSHPEWMIQRWLK 160
Query: 240 YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFIRV 299
G++E L + NN +R N+ K ++R DL +L + V E + E +R+
Sbjct: 161 RWGKDETEALCLINNEPAQTWIRTNTLK-ISRQDLADRL--MGTGVLVEFGERVPESLRI 217
Query: 300 KT-GLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLS 358
+ G ++A K G VQDES+ L+ VV P+ GQ ++D C+APGGKT ++A +
Sbjct: 218 QNFGAIEGLEA--FKAGYFTVQDESSQLIAHVVSPEAGQRVLDACSAPGGKTTHLAQMMK 275
Query: 359 GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSG 418
+G++ A D++ +L ++ + A+ + + I T D R +VL+DAPCSG
Sbjct: 276 DEGVIVAFDVHTHKLELIEQLAQRLGI-TCIETRLGDARDLTGIEPCSQQRVLVDAPCSG 334
Query: 419 LGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVE 478
LGVL +R+DLRW + D+++L +LQ +L+ A+ V GG L+YSTC+I+PEEN E ++
Sbjct: 335 LGVLRRRSDLRWQKAEGDIQDLPVLQLAILERAASCVDVGGDLIYSTCTIEPEENFELIK 394
Query: 479 AFLLRHPEFS-IDPADGLV-----PSDF-VTKHGFFFSDPIKHSLDGAFAARLVR 526
F HPEF ++ AD L P D K G P +H DG F A+ R
Sbjct: 395 KFRSAHPEFEPVNLADALPFKLEDPRDLQQAKKGMLQLLPQRHGTDGFFIAKFHR 449
>gi|292670256|ref|ZP_06603682.1| RNA methyltransferase Sun [Selenomonas noxia ATCC 43541]
gi|292648208|gb|EFF66180.1| RNA methyltransferase Sun [Selenomonas noxia ATCC 43541]
Length = 448
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 149/419 (35%), Positives = 224/419 (53%), Gaps = 17/419 (4%)
Query: 109 DRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MP 167
+RD R +T++V G ++ +D++I D +P + +LR+GFY+I +D +P
Sbjct: 45 ERDRRFLTELVYGVVKAGDTIDYMIGKYVSD---LRKAQPAIRTLLRLGFYQIFFMDKIP 101
Query: 168 PYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIY 227
A + V LAK R GA + VNG+LR L++ LPK G D AR+LA
Sbjct: 102 VSAACNTAVELAKKYGRRGAASFVNGVLR--TALREPERAALPK--GRD---ARSLALRE 154
Query: 228 SHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPH 287
HP+WM RW + G E A L NN+ S+R N+ + ++R L+ + ++
Sbjct: 155 QHPLWMTERWVRAYGYERAEALCRCNNTSAPLSVRTNTLR-ISRTQLIEKFKAAGVKART 213
Query: 288 ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPG 347
+ +R L NV+ L EGL VQDES+ LV V+ P+PG +++D CAAPG
Sbjct: 214 SAWVPEGVILRAHGAL-NVLAP--LHEGLAQVQDESSMLVTHVLAPEPGMTVIDACAAPG 270
Query: 348 GKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKC 407
GKT ++A + G + A DI + ++R + AK + S+I D R + +
Sbjct: 271 GKTTHIAQRMENCGRILAFDIYEEKIRRIERNAKRLGI-SIIEAAVLDAREIGAHYKEQA 329
Query: 408 DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467
D+VL+DAPCSGLGVL ++ D RW + D + L LQ E+L +A+ V+ GGVLVYSTC+
Sbjct: 330 DRVLVDAPCSGLGVLRRKPDARWRKSASDRKTLPPLQREILASAAQTVRKGGVLVYSTCT 389
Query: 468 IDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARLVR 526
++ EN VE FL HP+FS++ +P ++ P DG F AR+ R
Sbjct: 390 MEDCENTAVVEHFLKTHPDFSLEETGAFLPGKKRSEQMVQIM-PETDGPDGFFIARMRR 447
>gi|390440194|ref|ZP_10228542.1| Ribosomal RNA small subunit methyltransferase B [Microcystis sp.
T1-4]
gi|389836395|emb|CCI32668.1| Ribosomal RNA small subunit methyltransferase B [Microcystis sp.
T1-4]
Length = 446
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 161/442 (36%), Positives = 231/442 (52%), Gaps = 18/442 (4%)
Query: 90 DNEMGYVERTLG--FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSME 147
D Y +R L L+ D L T+IV G IR +R LD L+ L +KT +
Sbjct: 16 DRSSAYPDRALDRHLSASSLNCLDKALTTEIVYGIIRRQRTLDALLDRL--GKKTAAQQP 73
Query: 148 PLLLQILRIGFYEIVKL-DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNS 206
P L +IL IG Y++ L +PP A V+ V L K++ +VNG+LR+ + L N
Sbjct: 74 PDLRRILHIGLYQLRYLSQIPPSAAVNTAVELTKISHLGKLAAVVNGMLRQYLRLTANGD 133
Query: 207 LPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSR 266
PL E A L ++S P W+V+ W E +L W N P +R N
Sbjct: 134 DPLILPENT----ASRLGILHSFPDWLVQLWLDRFSVTETEQLCQWFNRSPDLDIRINPL 189
Query: 267 KGVTRADLVMQLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGL 326
K +R L +L + H L L R+ +GL N+ + + G +QD SA L
Sbjct: 190 K-TSREALENELESANITFNH---LKLPLACRLTSGLGNIERLEGFRAGNYTLQDISAQL 245
Query: 327 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVN 386
V ++DPQPG++I+D CAAPGGKT ++A + +G + A D RLR L K +
Sbjct: 246 VTYLLDPQPGETIIDACAAPGGKTTHIAELMGDRGRILACDQTASRLRQLEANIKRLDLK 305
Query: 387 SVIRTIH-ADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQD 445
++ IH D R + D+VL+DAPCSGLG L KR D+RW + E++ L Q
Sbjct: 306 AI--EIHLGDSRDRPQWCGI-ADRVLIDAPCSGLGTLHKRPDIRWRQTPENLPVLAKRQG 362
Query: 446 ELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVP-SDFVTKH 504
ELL +A+ VKP G+LVY+TC++DP ENE +E FL HP++ + P D S++ T+
Sbjct: 363 ELLASAATWVKPKGILVYATCTLDPLENERVIEQFLAAHPDWKMAPPDSNSSFSEYYTET 422
Query: 505 GFFFSDPIKHSLDGAFAARLVR 526
G P +H+ DG F A+LV+
Sbjct: 423 GAIEVLPHRHNQDGFFMAKLVK 444
>gi|255657701|ref|ZP_05403110.1| ribosomal RNA small subunit methyltransferase B [Mitsuokella
multacida DSM 20544]
gi|260849889|gb|EEX69896.1| ribosomal RNA small subunit methyltransferase B [Mitsuokella
multacida DSM 20544]
Length = 452
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 153/413 (37%), Positives = 216/413 (52%), Gaps = 33/413 (7%)
Query: 102 FRTKDLDDRDLRLVTDIV------GGTIRW--RRYLDHLICLLCHDEKTFSSMEPLLLQI 153
R DL ++D R VT++V GGT+ W RRY+ + ++P + +I
Sbjct: 30 LRQLDLGEQDRRFVTELVYGAVKAGGTLDWILRRYVS----------RPVRKIQPFVREI 79
Query: 154 LRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKL 212
LR+G Y+I LD +P A + V LAK G VN +LR V + + P K
Sbjct: 80 LRLGLYQIFYLDKVPASAACNTAVDLAKGMGVKGLSGFVNAVLRTAVREPEKAAFPSGKG 139
Query: 213 EGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRA 272
+ LA HP W+VR W + G E A KL ++N P S+RAN+ + A
Sbjct: 140 HATEN-----LALRSQHPEWLVRHWVRTFGFEAAEKLCAFDNEQPVLSVRANTLRTDREA 194
Query: 273 DLVMQLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQA-GLLKEGLCAVQDESAGLVVAVV 331
L P + + E I V+ + A L+EG C VQDES+ LV VV
Sbjct: 195 LLAELAAAGAEAEPSQWA---PEGILVRH--HGALDALAPLQEGRCQVQDESSMLVAHVV 249
Query: 332 DPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRT 391
PQPG+ I+DCCAAPGGKT +MA+ + +G + A DI +L+ + E A + S I T
Sbjct: 250 GPQPGEFIIDCCAAPGGKTTHMAALMHDEGRILAGDIYSHKLQRIEENAARLGIQS-IET 308
Query: 392 IHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAA 451
D R + D+VL+DAPCSGLGVL ++ D RW + +++ L LQ +L++A
Sbjct: 309 EEIDAREIGEQYEAMADRVLVDAPCSGLGVLRRKPDARWRKTQQEIAALPDLQLAILESA 368
Query: 452 SLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKH 504
+ VKPGGVLVYSTC+I+ EN+ V FL +HPEF ++ +P TKH
Sbjct: 369 ARAVKPGGVLVYSTCTIELAENQGVVSRFLEQHPEFELETTGHYLP--LPTKH 419
>gi|428204437|ref|YP_007083026.1| ribosomal RNA small subunit methyltransferase RsmB [Pleurocapsa sp.
PCC 7327]
gi|427981869|gb|AFY79469.1| ribosomal RNA small subunit methyltransferase RsmB [Pleurocapsa sp.
PCC 7327]
Length = 446
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 158/418 (37%), Positives = 220/418 (52%), Gaps = 17/418 (4%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPY 169
D LVT++V G +R +R LD LI L +K S P L IL+IG Y++ L +P
Sbjct: 39 DRALVTELVYGIVRRQRSLDALIDQL--GKKKASQQPPNLRIILQIGLYQLRYLSHIPAS 96
Query: 170 AVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSH 229
A VD +V LAK +VNG+LR+ L S PL D Q +A YS
Sbjct: 97 AAVDTSVELAKKNGLKSLSGVVNGLLRQYERLAAQGSDPLEL--PTDPVQRLGIA--YSF 152
Query: 230 PVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTR--ADLVMQLNLLKLQVPH 287
P W+++ W G E KL W N P LR N K A + + +VP+
Sbjct: 153 PDWIIQLWLAQFGVAETEKLCEWFNRPPEIDLRVNILKTTIDEVATALADAGITVSRVPY 212
Query: 288 ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPG 347
L + +R+ G +++ Q +EG VQD SA LV ++DPQPG+ ++D CAAPG
Sbjct: 213 -----LPQALRLIGGARSIQQLPGFQEGWWTVQDSSAQLVAHLLDPQPGEVVIDACAAPG 267
Query: 348 GKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKC 407
GKT ++A + +G ++A D + RLR L E + Q+ S I+ D R F+ +
Sbjct: 268 GKTTHIAELMGDRGTIWACDRVESRLRKLQENIQRLQLQS-IQICTGDSRQFSQFRQ-RG 325
Query: 408 DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467
D+VLLDAPCSGLG L +R D+RW + E + +L LQ+ELL + VK GG LVY TC+
Sbjct: 326 DRVLLDAPCSGLGTLHRRPDIRWRQTPEKIAQLSRLQEELLTQTATWVKSGGTLVYVTCT 385
Query: 468 IDPEENEERVEAFLLRHPEFSIDPADGLVPS-DFVTKHGFFFSDPIKHSLDGAFAARL 524
++ ENE V AF RHP++ I P P+ F T G+ P H +DG F +L
Sbjct: 386 LNSLENETVVRAFCDRHPDWQIQPPSPDSPAVPFTTSEGWIKVLPHLHQMDGFFMVKL 443
>gi|443652432|ref|ZP_21130849.1| ribosomal RNA small subunit methyltransferase B [Microcystis
aeruginosa DIANCHI905]
gi|159030883|emb|CAO88564.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
gi|443334299|gb|ELS48818.1| ribosomal RNA small subunit methyltransferase B [Microcystis
aeruginosa DIANCHI905]
Length = 446
Score = 236 bits (601), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 160/442 (36%), Positives = 232/442 (52%), Gaps = 18/442 (4%)
Query: 90 DNEMGYVERTLG--FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSME 147
D Y +R L L+ D L T+IV G +R +R LD L+ L +KT +
Sbjct: 16 DRSSAYPDRALDRHLSASSLNCLDKALTTEIVYGIVRRQRTLDALLDRL--GKKTAAQQP 73
Query: 148 PLLLQILRIGFYEIVKL-DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNS 206
P L +IL IG Y++ L +PP A V+ V L K++ +VNG+LR+ + L N
Sbjct: 74 PDLRRILHIGLYQLRYLSQIPPSAAVNTAVELTKISHLGKLAAVVNGMLRQYLRLTANGD 133
Query: 207 LPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSR 266
PL E A L ++S P W+V+ W G E +L W N P +R N
Sbjct: 134 DPLILPENT----ASRLGILHSFPDWLVQLWLDRFGVTETEQLCQWFNRSPDLDIRINPL 189
Query: 267 KGVTRADLVMQLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGL 326
K +R L +L + H L L R+ +GL N+ + + G +QD SA L
Sbjct: 190 K-TSREALENELESANITFNH---LKLPLACRLTSGLGNIERLEGFRAGNYTLQDISAQL 245
Query: 327 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVN 386
V ++DPQPG++I+D CAAPGGKT ++A + +G + A D RLR L K +
Sbjct: 246 VTHLLDPQPGETIIDACAAPGGKTTHIAELMGDRGRILACDQTPSRLRQLEANIKRLDLK 305
Query: 387 SVIRTIH-ADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQD 445
++ IH D R + D+VL+DAPCSGLG L KR D+RW + E++ L Q
Sbjct: 306 AI--EIHLGDSRDRPQWCGI-ADRVLIDAPCSGLGTLHKRPDIRWRQTPENLPVLAKRQG 362
Query: 446 ELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPAD-GLVPSDFVTKH 504
ELL +A+ VKP G+LVY+TC+++P ENE +E FL HP++ + P D S++ T+
Sbjct: 363 ELLASAATWVKPKGILVYATCTLNPLENERVIEQFLAAHPDWKMAPPDSNSCFSEYYTET 422
Query: 505 GFFFSDPIKHSLDGAFAARLVR 526
G P +H+ DG F A+LV+
Sbjct: 423 GAIEVLPHRHNQDGFFMAKLVK 444
>gi|310642738|ref|YP_003947496.1| ribosomal RNA small subunit methyltransferase b [Paenibacillus
polymyxa SC2]
gi|386041819|ref|YP_005960773.1| sun protein [Paenibacillus polymyxa M1]
gi|309247688|gb|ADO57255.1| Ribosomal RNA small subunit methyltransferase B [Paenibacillus
polymyxa SC2]
gi|343097857|emb|CCC86066.1| sun protein [Paenibacillus polymyxa M1]
Length = 471
Score = 236 bits (601), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 152/430 (35%), Positives = 243/430 (56%), Gaps = 28/430 (6%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L D+ L T++V GT+ R LD+ + +K + ++P + +LR+ Y++V LD
Sbjct: 58 LSASDVGLTTELVYGTVARRNTLDYFLNKFV--QKGTAKLQPWVRSLLRMSVYQLVYLDR 115
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPK-LEGNDRAQARALA 224
+P +AVV E V +AK G +VNG+LR + L++ + L +P L +R ++
Sbjct: 116 VPDHAVVSEAVTIAKRRGHQGISGMVNGVLRSM--LREPDKLRIPDGLSAEER-----IS 168
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKL- 283
+SHP W+V+RW K G + A + NN P+ S+R N+ +T D ++ + K
Sbjct: 169 LEHSHPQWLVKRWIKQYGVDTAEAICKANNEPPAVSVRVNTT--MTSRDQLLDEMVAKGI 226
Query: 284 -QVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 342
VP +S + I V++G N+ +GL +VQDES+ LV V P+PG +++DC
Sbjct: 227 DAVPSPVSPY---GIVVRSG-GNMALTSWYTDGLLSVQDESSMLVAEAVAPEPGMTVLDC 282
Query: 343 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN 402
CAAPGGKT +MA + +G + A D++ + +++ E A +++V T+ D +
Sbjct: 283 CAAPGGKTAHMAELMKDRGRIVANDLHAHKHQLIREQASRLGLDAV-ETVTGDALDLKER 341
Query: 403 -STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVL 461
+ D++LLDAPCSG GV+ ++ DLRW++ ED+ ++ LQ ELLD+ + L+KPGG+L
Sbjct: 342 YAPASFDRILLDAPCSGFGVIRRKPDLRWSKTAEDVRDITQLQHELLDSVAGLLKPGGIL 401
Query: 462 VYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPS-----DFVTKHGFFFSDPIKHSL 516
VYSTC+I+P+ENE ++ FL HPE+ + D P D + K HS
Sbjct: 402 VYSTCTIEPDENEGQLARFLSEHPEYEL-AKDHSFPDVNHEMDGIQKGSVQLLPQHFHS- 459
Query: 517 DGAFAARLVR 526
DG + ARL R
Sbjct: 460 DGFYIARLRR 469
>gi|282901368|ref|ZP_06309293.1| Fmu, rRNA SAM-dependent methyltransferase [Cylindrospermopsis
raciborskii CS-505]
gi|281193647|gb|EFA68619.1| Fmu, rRNA SAM-dependent methyltransferase [Cylindrospermopsis
raciborskii CS-505]
Length = 446
Score = 236 bits (601), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 160/439 (36%), Positives = 238/439 (54%), Gaps = 34/439 (7%)
Query: 96 VERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQ-IL 154
++RTL L D D RL+T++V G++R +R LD +I + D+K S +P L+ IL
Sbjct: 27 IDRTL--HKFKLSDHDRRLMTELVYGSVRRQRSLDAIIDQIA-DKK--SPQQPRDLRCIL 81
Query: 155 RIGFYEI-VKLDMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLE 213
+G Y++ + +P A V+ V+LAK PG VNG LR+ + L + S PL E
Sbjct: 82 HLGLYQLRYQQKIPVSAAVNTTVQLAKENGFPGLTGFVNGFLRQYIRLLEKTSDPLILPE 141
Query: 214 GNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRAD 273
L +YS P W++ W LGQEE KL W N P+ LR N + RA
Sbjct: 142 N----LVERLGILYSFPNWVIEVWLSQLGQEETEKLCQWMNQTPTIDLRVN----ILRAS 193
Query: 274 LVMQLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLK------EGLCAVQDESAGLV 327
+ M ++ K + + L + GL+ V AG ++ EG +QD +A LV
Sbjct: 194 VEMVESVFK-----KSGILLHRIPHLPQGLRLVGPAGPIQNLPGFTEGWWCIQDAAAQLV 248
Query: 328 VAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNS 387
++DP+PG+ I+D CAAPGGKT ++A + G +YA D RLR L+E A+ ++ S
Sbjct: 249 GHLLDPRPGEVIIDVCAAPGGKTTHIAELMGDNGKIYACDRTPSRLRKLSENAQRLRLQS 308
Query: 388 VIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDEL 447
I D R F + D+VLLDAPCSGLG + + AD RW + L + +L +Q EL
Sbjct: 309 -IEIFPGDSRNFTKFHHL-ADRVLLDAPCSGLGTMHRHADARWRQNLSSVGDLAHIQREL 366
Query: 448 LDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDF--VTKHG 505
+ + VKPGGVLVY+TC++ P+ENEE + FL +P++ ++ + DF V+ G
Sbjct: 367 ISHTANFVKPGGVLVYATCTLHPQENEELIREFLHVNPQWEMEKPN----LDFLDVSSPG 422
Query: 506 FFFSDPIKHSLDGAFAARL 524
+ P + ++DG F RL
Sbjct: 423 WLKLWPHQQNMDGFFLVRL 441
>gi|282895327|ref|ZP_06303529.1| Fmu, rRNA SAM-dependent methyltransferase [Raphidiopsis brookii D9]
gi|281199633|gb|EFA74493.1| Fmu, rRNA SAM-dependent methyltransferase [Raphidiopsis brookii D9]
Length = 465
Score = 236 bits (601), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 160/439 (36%), Positives = 238/439 (54%), Gaps = 34/439 (7%)
Query: 96 VERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQ-IL 154
++RTL + L D D RL+T++V G++R +R LD +I + D+K S +P L+ IL
Sbjct: 46 IDRTL--QKFKLSDHDRRLMTELVYGSVRRQRSLDAIIDQIA-DKK--SQQQPRDLRCIL 100
Query: 155 RIGFYEI-VKLDMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLE 213
+G Y++ + +P A V+ V+LAK PG VNG LR+ + L + S PL E
Sbjct: 101 HLGLYQLRYQQKIPVSAAVNTTVQLAKENGFPGLTGFVNGFLRQYIRLLEKTSDPLILPE 160
Query: 214 GNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRAD 273
L +YS P W++ W LGQEE KL W N P+ LR N + RA
Sbjct: 161 N----LVERLGILYSFPNWVIEVWLSQLGQEETEKLCQWMNQTPTIDLRVN----ILRAS 212
Query: 274 LVMQLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLK------EGLCAVQDESAGLV 327
L M ++ K + + +D + GL+ V AG ++ EG +QD +A LV
Sbjct: 213 LEMVESVFK-----KAGILVDRIPHLPQGLRLVNPAGPIQNLPGFTEGWWCIQDAAAQLV 267
Query: 328 VAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNS 387
++DP+PG+ I+D CAAPGGKT ++A + G +YA D RLR L+E A+ ++ S
Sbjct: 268 GHLLDPKPGEVIIDVCAAPGGKTTHIAELMGDNGKIYACDRTPSRLRKLSENAQRLRLQS 327
Query: 388 VIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDEL 447
I D R F V D+VLLDAPCSGLG + + AD RW + + +L +Q EL
Sbjct: 328 -IEIFPGDSRNFTQFHHV-ADRVLLDAPCSGLGTMHRHADARWRQDPSSVGDLAHIQKEL 385
Query: 448 LDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDF--VTKHG 505
+ + VKPGGVLVY+TC++ P+ENE+ + FL +P++ ++ + DF V+ G
Sbjct: 386 ISHTAKFVKPGGVLVYATCTLHPQENEDLIREFLHINPQWEMEKPN----FDFLDVSSPG 441
Query: 506 FFFSDPIKHSLDGAFAARL 524
+ P + +DG F RL
Sbjct: 442 WLKLWPHQQLMDGFFLVRL 460
>gi|238926271|ref|ZP_04658031.1| rRNA SAM-dependent methyltransferase RmsB [Selenomonas flueggei
ATCC 43531]
gi|238885951|gb|EEQ49589.1| rRNA SAM-dependent methyltransferase RmsB [Selenomonas flueggei
ATCC 43531]
Length = 449
Score = 236 bits (601), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 155/432 (35%), Positives = 230/432 (53%), Gaps = 29/432 (6%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
R + +RD R +T++V GT++ LD++I D K +P + ++LR+GFY+I
Sbjct: 39 LRIAQMTERDRRFLTELVYGTVKAGETLDYMIRRYVADLK---KAQPPIRELLRLGFYQI 95
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
+D +P AV V LAK GA + VNG+LR + +LP +G+D A
Sbjct: 96 FFMDKIPSSAVCHTAVELAKKHGGKGAASFVNGVLRTALREPKRAALP----QGHD---A 148
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
R+LA HPVWMV RW + G E L +N +LR N+ + +R L+ +L
Sbjct: 149 RSLALRMQHPVWMVERWLRDYGSERTETLCRCDNESAPLTLRTNTLR-TSRTALIERLTA 207
Query: 281 L------KLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQ 334
L+VP + LH G + + L+EGL VQDES+ LV V+ +
Sbjct: 208 AGVRAEASLRVPESVLLHAH-------GALDALAP--LREGLAQVQDESSMLVAHVLGAE 258
Query: 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHA 394
PG +++D CAAPGGKT ++A + +G ++A DI++ +LR + A+ + S+I T
Sbjct: 259 PGMTVIDACAAPGGKTTHIAQRMENRGRIWAFDIHEEKLRRIMRNAERLGI-SIIETQLL 317
Query: 395 DLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLL 454
D R + V D+VL+DAPCSGLGVL ++ D RW + D++ L LQ +L +A+
Sbjct: 318 DAREVGAHYGVCADRVLVDAPCSGLGVLRRKPDARWRKTPSDVKTLPPLQLAILASAART 377
Query: 455 VKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKH 514
VK GGVLVYSTC+++ EN VEAFL H +F ++ +P T P
Sbjct: 378 VKQGGVLVYSTCTMERSENTAVVEAFLRGHEDFVLEETGAFLPEQ-KTAERMVQIMPETG 436
Query: 515 SLDGAFAARLVR 526
DG F AR+ R
Sbjct: 437 GPDGFFIARMRR 448
>gi|422344990|ref|ZP_16425913.1| ribosomal RNA small subunit methyltransferase B [Selenomonas noxia
F0398]
gi|355376132|gb|EHG23393.1| ribosomal RNA small subunit methyltransferase B [Selenomonas noxia
F0398]
Length = 448
Score = 236 bits (601), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 151/426 (35%), Positives = 224/426 (52%), Gaps = 17/426 (3%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
R +RD R +T++V G ++ +D++I D +P + +LR+GFY+I
Sbjct: 38 LRAAQPTERDRRFLTELVYGVVKAGDTIDYMIGKYVSD---LRKAQPAIRTLLRLGFYQI 94
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
+D +P A + V LAK R GA + VNG+LR L++ LPK G D A
Sbjct: 95 FFMDKIPVSAACNTAVELAKKYGRRGAASFVNGVLR--TALREPERAALPK--GRD---A 147
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
R+LA HP+WM RW + G E A L NN+ S+R N+ ++R L+ +
Sbjct: 148 RSLALREQHPLWMTERWVRAYGYERAEALCRCNNTSAPLSVRTNT-LCISRTQLIEKFET 206
Query: 281 LKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIV 340
++ + +R L NV+ L EGL VQ ES+ LV V+ P+PG +++
Sbjct: 207 AGVKARTSAWVPEGVILRAHGAL-NVLAP--LHEGLAQVQGESSMLVAHVLAPEPGMTVI 263
Query: 341 DCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 400
D CAAPGGKT ++A + +G + A DI + ++R + AK V S+I T D R
Sbjct: 264 DACAAPGGKTTHIAQRMENRGRILAFDIYEEKIRRIERNAKRLSV-SIIETAVLDAREIG 322
Query: 401 DNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGV 460
+ + D+VL+DAPCSGLGVL ++ D RW + D + L LQ E+L +A+ V+ GGV
Sbjct: 323 VHYKEQADRVLVDAPCSGLGVLRRKPDARWRKSASDRKTLPPLQREILASAAQAVRKGGV 382
Query: 461 LVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAF 520
LVYSTC+++ EN VE FL HP+FS++ +P + P DG F
Sbjct: 383 LVYSTCTMEDCENTAVVEHFLKTHPDFSLEETGAFLPGKKRAEQMVQIM-PETDGPDGFF 441
Query: 521 AARLVR 526
AR+ R
Sbjct: 442 IARMRR 447
>gi|428303896|ref|YP_007140721.1| sun protein [Crinalium epipsammum PCC 9333]
gi|428245431|gb|AFZ11211.1| sun protein [Crinalium epipsammum PCC 9333]
Length = 480
Score = 235 bits (600), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 158/451 (35%), Positives = 227/451 (50%), Gaps = 32/451 (7%)
Query: 96 VERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILR 155
++R L T DR+L VT++V G++R R LD L+ L +K + P L IL
Sbjct: 28 IDRALHKATLSRSDRNL--VTELVYGSVRRLRSLDALLDQL--GKKKANQQNPDLRTILH 83
Query: 156 IGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEG 214
+G Y++ LD + V+ V LAK +VNGILR+ + LK+ PL E
Sbjct: 84 LGLYQLRYLDNISAATAVNSTVELAKTNSFSALTGVVNGILRQYIRLKEELGDPLQLPEN 143
Query: 215 NDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANS-RKGVTRAD 273
L YS P W++ W LG E +L N PS LR N R + +
Sbjct: 144 ----PVERLGIFYSFPNWIIEAWLAQLGFAETEQLCAAMNQTPSIDLRVNILRTSIEEVE 199
Query: 274 LVMQ-----LNLLKLQVP--------------HELSLHLDEFIRVKTGLQNVIQAGLLKE 314
MQ +N + + P E + + + +R+ + + + E
Sbjct: 200 AEMQSADVTVNRINFKNPLSVNEEGAESEVSNQEDKISVPQALRLSGKIGAIQELPGFTE 259
Query: 315 GLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLR 374
G +QD SA LV ++DPQPG+ ++D CAAPGGKT ++A + G V+ D RL+
Sbjct: 260 GWWTIQDSSAQLVSYLLDPQPGEVVIDACAAPGGKTTHIAELMGDVGKVWGCDRTPSRLK 319
Query: 375 ILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRL 434
L E A+ + S I+ D R T KCD+ LLDAPCSGLG L++RAD RW +
Sbjct: 320 KLKENAQRLNLKS-IQICTGDSRDLP-QFTNKCDRALLDAPCSGLGTLNRRADARWRQTP 377
Query: 435 EDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADG 494
E + EL LQ +LLD A+ VKPGG+LVY+TC++ ENE+ ++AFL H + IDP
Sbjct: 378 ETVRELSTLQAQLLDHAATWVKPGGILVYATCTVHSPENEDIIQAFLDTHSNWQIDPPLT 437
Query: 495 LVP-SDFVTKHGFFFSDPIKHSLDGAFAARL 524
P ++F G+ P +H +DG F RL
Sbjct: 438 NSPLANFAAPEGWIKVLPHRHQMDGFFMVRL 468
>gi|297583987|ref|YP_003699767.1| sun protein [Bacillus selenitireducens MLS10]
gi|297142444|gb|ADH99201.1| sun protein [Bacillus selenitireducens MLS10]
Length = 457
Score = 235 bits (600), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 151/430 (35%), Positives = 244/430 (56%), Gaps = 37/430 (8%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
K + + D+ L+T+IV GT++ +R LD+ + +K + +E +L +LR+ Y++ L
Sbjct: 39 KKIKEVDVALLTEIVYGTLQHQRRLDYYVSAFS--KKELNKLENWVLILLRLSVYQMHFL 96
Query: 165 D-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARAL 223
D +P +A+++E VR+A G +VNGILR + +P LE + + R L
Sbjct: 97 DRVPDHAILNEAVRIASKRGHKGIAGMVNGILRSV------QREGVPDLEEIEDPKER-L 149
Query: 224 ATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKL 283
A SHP W+++RW + G E A ++ N S P S R N R VTR +L+ + L
Sbjct: 150 AIETSHPDWLIQRWISHYGFETAHRIAHGNLSYPVSSARVN-RMKVTREELMHEWTEEGL 208
Query: 284 QVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCC 343
Q+ S +L+E +RV G+ + + +EG C++QDE + +V ++DP+PG ++D C
Sbjct: 209 QIT--ASPYLEEAVRVDKGV--ISRTAAFREGRCSIQDEGSMMVTGLLDPKPGMRVLDSC 264
Query: 344 AAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN- 402
AAPGGKT ++A ++ +G +YA+DI+K ++++++ A+ + SV+ + D R +
Sbjct: 265 AAPGGKTSHIAERMNDEGELYAMDIHKHKIKLIDAQAERLGL-SVVHGLKGDARLAGEQL 323
Query: 403 STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLV 462
D +L+DAPCSGLGV+ ++ DL+W + D+E L ++Q E+L L+KPGG LV
Sbjct: 324 EEESFDCILVDAPCSGLGVIQRKPDLKWTKSERDIERLTVIQGEILKQVWPLLKPGGRLV 383
Query: 463 YSTCSIDPEENEERV------------EA-FLLRHPE------FSIDPADGLVPSDFVTK 503
YSTC+ID EENE +V EA FL R PE F+ L+P + T
Sbjct: 384 YSTCTIDYEENEGQVTHFVNETADADFEADFLNRLPEPVQTSSFANQSGIQLIPGQYGTD 443
Query: 504 HGFFFSDPIK 513
GFF + +K
Sbjct: 444 -GFFMTSIVK 452
>gi|374324700|ref|YP_005077829.1| ribosomal RNA small subunit methyltransferase B (rRNA
(cytosine-C(5)-)-methyltransferase) [Paenibacillus
terrae HPL-003]
gi|357203709|gb|AET61606.1| ribosomal RNA small subunit methyltransferase B (rRNA
(cytosine-C(5)-)-methyltransferase) [Paenibacillus
terrae HPL-003]
Length = 471
Score = 235 bits (599), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 154/431 (35%), Positives = 241/431 (55%), Gaps = 30/431 (6%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L D L T++V GT+ R LD+ + +K + ++ + +LR+ Y+IV LD
Sbjct: 58 LSASDAGLATELVYGTVARRNTLDYFLNKFV--QKGTAKLQAWVRSLLRMSVYQIVYLDR 115
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPK-LEGNDRAQARALA 224
+P +AVV E V +AK G +VNG+LR + L++ + L +P L +R +A
Sbjct: 116 IPDHAVVSEAVTIAKRRGHQGISGMVNGVLRSM--LREPDKLRIPDGLSAEER-----IA 168
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQ 284
+SHP W+V+RW K G + A + NN P+ S+R N+ TR L++++ +
Sbjct: 169 LEHSHPQWLVKRWIKQYGVDIAEAICRANNEPPAVSVRVNTTM-TTRDQLLIEMLAKGMD 227
Query: 285 -VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCC 343
VP +S + I V++G N+ +GL +VQDES+ LV V P+P ++DCC
Sbjct: 228 AVPSAVSPY---GIVVRSG-GNMALTTWYTDGLLSVQDESSMLVAEAVAPEPDMLVLDCC 283
Query: 344 AAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN- 402
AAPGGKT +MA + QG + A D++ + R++ E A +++V T+ D +
Sbjct: 284 AAPGGKTAHMAELMKDQGRIIANDLHAHKHRLIQEQADRLGLDAV-ETVTGDALELKNRY 342
Query: 403 STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLV 462
+ D+VLLDAPCSG GV+ ++ DLRW++ +D+ ++ LQ ELLD+ + L+KPGG+LV
Sbjct: 343 APASFDRVLLDAPCSGFGVIRRKPDLRWSKTPQDVRDITQLQHELLDSVAELLKPGGILV 402
Query: 463 YSTCSIDPEENEERVEAFLLRHPEFSI-------DPADGLVPSDFVTKHGFFFSDPIKHS 515
YSTC+I+P+ENE ++ FL HPE+ + D DG+ D + HS
Sbjct: 403 YSTCTIEPDENEGQITRFLGEHPEYELAEGHSFPDVTDGM---DHAQRGSIQLLPQHFHS 459
Query: 516 LDGAFAARLVR 526
DG + ARL R
Sbjct: 460 -DGFYIARLRR 469
>gi|308069674|ref|YP_003871279.1| ribosomal RNA small subunit methyltransferase B (rRNA
(cytosine-C(5)-)-methyltransferase) [Paenibacillus
polymyxa E681]
gi|305858953|gb|ADM70741.1| Ribosomal RNA small subunit methyltransferase B (rRNA
(cytosine-C(5)-)-methyltransferase) [Paenibacillus
polymyxa E681]
Length = 471
Score = 234 bits (598), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 146/430 (33%), Positives = 242/430 (56%), Gaps = 33/430 (7%)
Query: 61 RAVSAVRLMRIQFGGAFADL-LNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIV 119
R V+ L+ ++ GA+++L LN++ + +G L D L T++V
Sbjct: 28 REVALDVLIGVEQEGAYSNLELNRRLQQAG-----------------LSASDAGLATELV 70
Query: 120 GGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRL 178
GT+ R LD+ + +K + ++ + +LR+ Y++V LD +P +AVV E V +
Sbjct: 71 YGTVARRNTLDYFLNKFV--QKGTAKLQAWVRSLLRMSVYQLVYLDRVPDHAVVSEAVTI 128
Query: 179 AKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWT 238
AK G +VNG+LR + L++ + L +P +D + ++ +SHP W+V+RW
Sbjct: 129 AKRRGHQGISGMVNGVLRSM--LREPDKLRIP----DDLSPEERISLEHSHPQWLVKRWI 182
Query: 239 KYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQ-VPHELSLHLDEFI 297
K G + A + NN P+ S+R N+ +R L+ ++N L VP +S + I
Sbjct: 183 KQYGADTAEAICQANNEPPAVSVRVNTTM-TSRDQLLDEMNSKGLDAVPSAVSPY---GI 238
Query: 298 RVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCL 357
V++G N+ +GL +VQDES+ LV V P+PG ++DCCAAPGGKT +MA +
Sbjct: 239 VVRSG-GNMALTSWYTDGLLSVQDESSMLVAEAVAPEPGMLVLDCCAAPGGKTAHMAELM 297
Query: 358 SGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCS 417
G + A D++ + +++ E A +++V L + D++LLDAPCS
Sbjct: 298 KDHGRIVANDLHAHKHQLIREQANRLGLDAVETVTGDALELKERYAPASFDRILLDAPCS 357
Query: 418 GLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERV 477
G GV+ ++ DLRW++ +D+ ++ LQ ELLD+ + L+KPGG+LVYSTC+I+P+ENE ++
Sbjct: 358 GFGVIRRKPDLRWSKTAQDVRDITQLQHELLDSVAGLLKPGGILVYSTCTIEPDENEGQL 417
Query: 478 EAFLLRHPEF 487
FL HPE+
Sbjct: 418 TQFLSEHPEY 427
>gi|251797738|ref|YP_003012469.1| sun protein [Paenibacillus sp. JDR-2]
gi|247545364|gb|ACT02383.1| sun protein [Paenibacillus sp. JDR-2]
Length = 491
Score = 234 bits (598), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 161/435 (37%), Positives = 230/435 (52%), Gaps = 31/435 (7%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L D LVT++V GTI+ + LDH + K +EP + Q+LR+ Y+++ LD
Sbjct: 71 LQRADAALVTELVYGTIQRQLTLDHWLGKFA--AKGLRKLEPWVHQLLRMSAYQLLYLDR 128
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P +A V+E V +AK G +VNGILR + D N L D+ ++
Sbjct: 129 IPAHAAVNEAVTIAKRRGHQGISGMVNGILRSI----DRNRAELTVDAIADKNPVVQISV 184
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
YS+P W+V RW K G E A + N P S+R N + +R ++ L+LL Q
Sbjct: 185 RYSYPEWLVERWVKAYGAETAEAICASGNEPPHASVRVNPLRS-SRNEV---LSLLTEQG 240
Query: 286 PH-ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 344
E S I V+ G N+ ++GL +QDES+ LV VV P+ G ++DCCA
Sbjct: 241 GDAEASRLAPAGIVVRRG-GNLADTEGFRDGLWTMQDESSMLVAEVVAPKAGMQVLDCCA 299
Query: 345 APGGKTLYMASCLSGQGLVYAIDIN-KGRLRILNETAKLHQVNSVIRTIHADLRTFADN- 402
APGGKT +MA +SG+G VYA D++ R I+++ +L N I I D +
Sbjct: 300 APGGKTTHMAELMSGKGKVYANDLHPHKRQLIVDQAVRLGLQN--IEAITEDAGKLGERF 357
Query: 403 STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLV 462
+ D VLLDAPCSG GV+ ++ +++W + D+ E+ +Q LL A + LVKPGG LV
Sbjct: 358 APASIDAVLLDAPCSGFGVIRRKPEIKWTKTAGDVAEIAAIQRRLLGAVAGLVKPGGTLV 417
Query: 463 YSTCSIDPEENEERVEAFLLRHPEFSID---PADGLVPSDFVTKHGFFFSD--------P 511
YSTC+I+ ENEE+V FL HPEF +D P + L P + + G S P
Sbjct: 418 YSTCTIESTENEEQVAVFLKEHPEFQLDAEWPEEALAP---LREKGIIDSSFDGQAQLLP 474
Query: 512 IKHSLDGAFAARLVR 526
+ DG F ARL R
Sbjct: 475 HHYGSDGFFIARLRR 489
>gi|402297531|ref|ZP_10817298.1| 16S rRNA methyltransferase B [Bacillus alcalophilus ATCC 27647]
gi|401727206|gb|EJT00399.1| 16S rRNA methyltransferase B [Bacillus alcalophilus ATCC 27647]
Length = 448
Score = 234 bits (598), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 159/473 (33%), Positives = 257/473 (54%), Gaps = 42/473 (8%)
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVG 120
R V+ L++I+ A+++LL + SG+ ++ RD+ L+T++V
Sbjct: 6 REVALQVLIQIEKEQAYSNLLLNQTINSGE----------------VEKRDIGLLTELVY 49
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLA 179
GT++ R L L +K S+EP + +L++ Y++V L+ +P AV+ E V +A
Sbjct: 50 GTVQ--RKLTLTFFLTPFVKKGLESLEPWVKTLLQMSVYQLVYLERVPERAVIHEAVTIA 107
Query: 180 KVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTK 239
K G +LVNGILR + +P E Q + LA YS P WMVRRW
Sbjct: 108 KKRGHDGTASLVNGILRSV------QREGVPSFEKVTN-QTKRLAFEYSFPKWMVRRWLA 160
Query: 240 YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQ--VPHELSLHLDEFI 297
G+EE ++M + P SLR N K + DL + +LK + + + L D I
Sbjct: 161 TYGEEETREMMKVSLKPPVVSLRVNQLK-TNQEDL---MKILKEEGVLTRKGELSSDALI 216
Query: 298 RVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCL 357
V+ G N + + GL QDES+ LV + P+ G+ I+D CAAPGGK+ ++A +
Sbjct: 217 -VEEG--NAFKTNAYRSGLFTAQDESSMLVAKALGPKAGEHILDSCAAPGGKSTHIAELM 273
Query: 358 SGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKC-DKVLLDAPC 416
+ +G + ++D+++ +++++ E AK + S+I + AD+R F+ + + D +LLDAPC
Sbjct: 274 NNEGSLLSVDLHEHKVQLIREQAKRLDL-SMIEVVAADVRAFSQKTPAQSFDAILLDAPC 332
Query: 417 SGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEER 476
SGLGV+ ++ D++W ++ D++++ +Q +L+A + L+K GG LVYSTC+ID EENE
Sbjct: 333 SGLGVIRRKPDIKWAKKESDIQDIAEIQAMILEAVAPLLKKGGRLVYSTCTIDQEENEAI 392
Query: 477 VEAFLLRHPEFSIDPA-DGLVPSDFVT----KHGFFFSDPIKHSLDGAFAARL 524
VE F+ HPEF D +P + V K G+ P + DG F A L
Sbjct: 393 VEHFIQTHPEFQWDITLSDRLPEEIVQSKRYKDGYVTILPHDYETDGFFIASL 445
>gi|189499780|ref|YP_001959250.1| sun protein [Chlorobium phaeobacteroides BS1]
gi|189495221|gb|ACE03769.1| sun protein [Chlorobium phaeobacteroides BS1]
Length = 447
Score = 234 bits (598), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 157/431 (36%), Positives = 237/431 (54%), Gaps = 36/431 (8%)
Query: 108 DDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-M 166
D D L T++V G +R+R LD +I L H + P+L ILR+G Y+++ LD +
Sbjct: 35 DKNDRSLATELVNGVLRYRLRLDFIISLSYHHD--LKKAAPVLRNILRLGAYQLLFLDKI 92
Query: 167 PPYAVVDENVRLA-KVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
P +A VDE V LA K R AG +VNG+LR++ K + L ++ N+ R L+
Sbjct: 93 PGWAAVDECVSLAVKYKGRHIAG-IVNGVLRRIASEKGS----LDEILKNE-PLGRRLSL 146
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
YSHP W+++RW K+ G+E + ++ NN P SLR N+ K +M L V
Sbjct: 147 EYSHPEWLLQRWLKHYGEELTVAMLSSNNRAPLLSLRVNTLKTTPE---IMGKALKDASV 203
Query: 286 ------PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSI 339
P + L D T + I GL+ VQ+ + L ++DP P ++I
Sbjct: 204 TFTKAAPEQFMLTHD-----FTACEPFIHLGLV-----TVQNPTQALPCLLLDPMPDETI 253
Query: 340 VDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF 399
+D C+APGGK +MA + +G + A+D + + + A+ + S+I TI + TF
Sbjct: 254 LDLCSAPGGKATFMAELMKNKGSILAVDRYRNKCEKVMRRAQALGI-SIIETIADNAETF 312
Query: 400 ADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGG 459
+ + +LLD PC+G GVL K+ DLRW + ++EL ILQ +LLD A+ L+ PGG
Sbjct: 313 QPDK--QPSAILLDVPCTGTGVLGKKPDLRWRITPQQLDELTILQGKLLDHAAGLLNPGG 370
Query: 460 VLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVP---SDFVTKHGFFFSDPIKHS- 515
VLVY+TCSI+PEEN+ +++ FL RHP+FS D + +P S+ + G F + P H
Sbjct: 371 VLVYATCSIEPEENQLQIDRFLERHPDFSRDHSPVPLPVMFSEMPSAPGAFITLPGNHEG 430
Query: 516 LDGAFAARLVR 526
DG FA RL++
Sbjct: 431 YDGGFAQRLLK 441
>gi|166367976|ref|YP_001660249.1| rRNA SAM-dependent methyltransferase [Microcystis aeruginosa
NIES-843]
gi|166090349|dbj|BAG05057.1| rRNA SAM-dependent methyltransferase [Microcystis aeruginosa
NIES-843]
Length = 450
Score = 234 bits (598), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 160/442 (36%), Positives = 230/442 (52%), Gaps = 18/442 (4%)
Query: 90 DNEMGYVERTLG--FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSME 147
D Y +R L L+ D L T+IV G IR +R LD L+ L +KT +
Sbjct: 16 DRSSAYPDRALDRHLSASSLNCLDTALTTEIVYGIIRRQRTLDALLDRL--GKKTAAQQP 73
Query: 148 PLLLQILRIGFYEIVKL-DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNS 206
P L +IL IG Y++ L +PP A V+ V L K++ +VNG+LR+ + L N
Sbjct: 74 PDLRRILHIGLYQLRYLSQIPPSAAVNTAVELTKISHLGKLAAVVNGMLRQYLRLTANGD 133
Query: 207 LPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSR 266
PL E A L ++S P W+V+ W E +L W N P +R N
Sbjct: 134 DPLLLPENT----ASRLGILHSFPDWLVQLWLDRFSVTETEQLCQWFNRSPDLDIRINPL 189
Query: 267 KGVTRADLVMQLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGL 326
K +R L +L + H L L R+ +GL N+ + + G +QD SA L
Sbjct: 190 K-TSREALENELESANITFHH---LKLPLACRLTSGLGNIERLEGFRAGNYTLQDISAQL 245
Query: 327 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVN 386
V ++DPQPG++I+D CAAPGGKT ++A + +G + A D RLR L K +
Sbjct: 246 VTYLLDPQPGETIIDACAAPGGKTTHIAELMGDRGRILACDQTASRLRQLEANIKRLDLK 305
Query: 387 SVIRTIH-ADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQD 445
++ IH D R + D+VL+DAPCSGLG L KR D+RW + E++ L Q
Sbjct: 306 AI--EIHLGDSRDRPQWHGI-ADRVLIDAPCSGLGTLHKRPDIRWRQTPENLPVLAKRQG 362
Query: 446 ELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSI-DPADGLVPSDFVTKH 504
ELL +A+ VKP G+LVY+TC++DP ENE +E FL HP++ + P S++ T+
Sbjct: 363 ELLASAATWVKPKGILVYATCTLDPLENERVIEQFLAAHPDWKMATPDSNSCVSEYYTET 422
Query: 505 GFFFSDPIKHSLDGAFAARLVR 526
G P +H+ DG F A+LV+
Sbjct: 423 GAIEVLPHRHNQDGFFMAKLVK 444
>gi|260887300|ref|ZP_05898563.1| ribosomal RNA small subunit methyltransferase B [Selenomonas
sputigena ATCC 35185]
gi|330838946|ref|YP_004413526.1| sun protein [Selenomonas sputigena ATCC 35185]
gi|260862936|gb|EEX77436.1| ribosomal RNA small subunit methyltransferase B [Selenomonas
sputigena ATCC 35185]
gi|329746710|gb|AEC00067.1| sun protein [Selenomonas sputigena ATCC 35185]
Length = 443
Score = 234 bits (597), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 155/435 (35%), Positives = 234/435 (53%), Gaps = 32/435 (7%)
Query: 102 FRTKDLDDRDLRLVTDIV------GGTIRW--RRYLDHLICLLCHDEKTFSSMEPLLLQI 153
R L + D R T++ GGT+ W RRYL+ + S + P++ I
Sbjct: 30 LRAAKLSEVDRRFATELAYGAAKAGGTLDWILRRYLN----------RPLSKIPPMVRDI 79
Query: 154 LRIGFYEIVKL-DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKL 212
LR+G Y++ L +P A + V + K G VN +LR + + P K
Sbjct: 80 LRLGIYQLFFLARVPASAACNTAVEMTKRCSHAGTVKFVNAVLRTAAREPEKAAFPTGKA 139
Query: 213 EGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRA 272
+A LA HP W+VRRW + G EEA L ++N+ + SLR N+ K +TR
Sbjct: 140 H-----EAENLALSLQHPEWLVRRWIEQFGYEEARALCEFDNAQATLSLRTNTLK-ITRD 193
Query: 273 DLVMQLNLLKLQVPHELSLHLDEFIR-VKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVV 331
L+ +L+ K V E S E I ++ G + +++ L++GL VQDES+ LV V+
Sbjct: 194 KLLERLS--KEGVEAEPSAWTPEGILFLRHGSLDALES--LQQGLFQVQDESSMLVAHVL 249
Query: 332 DPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRT 391
P+PG+ ++D C+APGGKT ++A+ + G + A+D+++ ++R + E + + SV
Sbjct: 250 APEPGEFVLDVCSAPGGKTTHIAASMGDCGRIVALDVHEHKMRRIAENCERLGIKSV-EP 308
Query: 392 IHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAA 451
+ D R + D+VL+DAPCSGLGVL ++ D RW +R +D+ L LQ E+L +A
Sbjct: 309 LLLDAREAGRRFPRQADRVLVDAPCSGLGVLRRKPDARWRKRPDDLAALARLQREILSSA 368
Query: 452 SLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDP 511
+ VK GGVLVYSTC+I+ EENE VE FL RH EFS++ A L+P + P
Sbjct: 369 AEAVKSGGVLVYSTCTIEREENEAVVEDFLARHEEFSLENAGELLPLKKRPEQMLQLY-P 427
Query: 512 IKHSLDGAFAARLVR 526
+ DG F AR+ R
Sbjct: 428 QRDGTDGFFIARMRR 442
>gi|440683854|ref|YP_007158649.1| sun protein [Anabaena cylindrica PCC 7122]
gi|428680973|gb|AFZ59739.1| sun protein [Anabaena cylindrica PCC 7122]
Length = 455
Score = 234 bits (597), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 152/432 (35%), Positives = 226/432 (52%), Gaps = 24/432 (5%)
Query: 102 FRTKDLDD----RDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIG 157
F+ D D+ RD RL T++V G +R +R LD LI + K P L IL +G
Sbjct: 32 FKLPDSDNETLRRDRRLTTELVYGCVRRQRTLDTLIDQIA--TKKAQQQPPDLRTILHLG 89
Query: 158 FYEI-VKLDMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGND 216
FY++ + +PP A V+ V LAK G +NG+LR+ + L + +S PL KL N
Sbjct: 90 FYQLRYQEKIPPSAAVNTTVELAKANGLTGLTGFINGLLRQYLRLGEKSSEPL-KLPENS 148
Query: 217 RAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANS-RKGVTRADLV 275
L +YS P W++ W LG E KL W N P+ LR N R + +
Sbjct: 149 ---VERLGILYSFPDWIIEVWLAQLGFAETEKLCAWMNQTPTIDLRVNILRSSLKEVESA 205
Query: 276 MQ-LNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQ 334
Q +L ++P L + +R+ + +EG +QD SA LV ++DP+
Sbjct: 206 FQSAGVLVKRIPR-----LPQALRLIGSNGPIQNLPGFREGWWTIQDSSAQLVGHLLDPK 260
Query: 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSV-IRTIH 393
PG+ ++D CAAPGGKT ++A + G ++A D RLR L + A+ + S+ I T
Sbjct: 261 PGEVVIDACAAPGGKTTHIAELMGDHGKIWACDKTASRLRKLQDNARRLNLQSIEIYTGD 320
Query: 394 A-DLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAAS 452
+ +L F + + D+VLLDAPCSGLG + + AD RW + E +++L +LQ +LL S
Sbjct: 321 SCNLPQFYN----QADRVLLDAPCSGLGTMHRHADARWRQTPESIQQLSLLQTKLLSHTS 376
Query: 453 LLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPI 512
VK GVLVY+TC++ P ENEE + FL HP + ++P + + T G+ P
Sbjct: 377 NFVKDNGVLVYATCTLHPAENEEVISRFLADHPHWQVEPPRQNLTATSSTPPGWLKIWPH 436
Query: 513 KHSLDGAFAARL 524
+ +DG F RL
Sbjct: 437 QEDMDGFFMVRL 448
>gi|290968496|ref|ZP_06560035.1| ribosomal RNA small subunit methyltransferase B [Megasphaera
genomosp. type_1 str. 28L]
gi|290781492|gb|EFD94081.1| ribosomal RNA small subunit methyltransferase B [Megasphaera
genomosp. type_1 str. 28L]
Length = 442
Score = 234 bits (597), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 151/425 (35%), Positives = 223/425 (52%), Gaps = 23/425 (5%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L DRD R T++V GT+R+ LD I +L +++ M+ + ILR+G Y++ LD
Sbjct: 34 LSDRDRRFYTELVYGTLRYMAMLDRAIGML--SKRSLQQMDAVCAAILRLGLYQLQYLDK 91
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKL---EGNDRAQARA 222
+PP A E V LA+ G VN +LR N+L P++ +
Sbjct: 92 VPPSAACYEAVALARKMGHEGMAKFVNAVLR--------NALRRPEVFVVPSRQEDEVLH 143
Query: 223 LATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLK 282
LA Y W +RR + G EE +KL + ++ P +R ++K + M
Sbjct: 144 LALTYHQQNWFIRRCLQQYGFEETVKLCRFFDTIPELCVRIQTQKISREKAMAMLAEKGI 203
Query: 283 LQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 342
+ P + +I +QN+ LL G +QDE++ LV V+DPQPG ++D
Sbjct: 204 VTRPGRYAPE-SLYIETNDAVQNL---ELLAAGRAMIQDEASQLVAHVLDPQPGDVVLDV 259
Query: 343 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETA-KLHQVNSVIRTIHADLRTFAD 401
CAAPGGKT ++AS LVY DI + +L+++ E A KLH N IRTI D +
Sbjct: 260 CAAPGGKTTHIASLGGSDCLVYGADIYEHKLQLIRENAEKLHLTN--IRTILQDAVRIGE 317
Query: 402 NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVL 461
K D+VL+DAPCSGLG+L ++ DLRW ++ +D+ L LQ +L+ A+ VKPGG+L
Sbjct: 318 RFPAKADRVLVDAPCSGLGILRRKLDLRWRKKEQDLMRLPSLQTRILNGAAACVKPGGIL 377
Query: 462 VYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFA 521
VYSTC+I+ EN VEAFL RH EF++ A + + P + +DG F
Sbjct: 378 VYSTCTINTAENAAVVEAFLQRHTEFTLLRAGE--TCSWPQPGKYIDVLPQRDGIDGFFI 435
Query: 522 ARLVR 526
A++ R
Sbjct: 436 AKMRR 440
>gi|421074228|ref|ZP_15535268.1| sun protein [Pelosinus fermentans JBW45]
gi|392527734|gb|EIW50820.1| sun protein [Pelosinus fermentans JBW45]
Length = 443
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 160/422 (37%), Positives = 233/422 (55%), Gaps = 16/422 (3%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+ D+D R +T++V GTI+ LD +I + ++ + + P++L ILR+G Y+I L
Sbjct: 34 ISDQDRRFITELVYGTIKAGETLDWIIG--HYVTRSLNKVAPVILNILRMGMYQIFFLSK 91
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A ++ V L K G VN +LR + + P E N + LA
Sbjct: 92 VPVSAACNQAVELTKKYGHTGTVKFVNAVLRNAG--RGPEKVIYPDREKN---IVKFLAL 146
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
Y HP WMV RW K LG + A +L NN P+ SLR N+ K TR +L+ LNL V
Sbjct: 147 KYFHPQWMVARWVKRLGADAAEELCQINNVTPALSLRTNTLKN-TREELLDILNLEG--V 203
Query: 286 PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAA 345
E S+ E I V + L++GL +QDES+ LV V+ P+P + I+D C A
Sbjct: 204 SAEASVWTPEGI-VCHSYPALSTLKSLRDGLFQIQDESSMLVAHVLAPKPDEFIIDACGA 262
Query: 346 PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTV 405
PGGK+ ++A+ + +G V + DI + +L + E A+ + ++I D T DN
Sbjct: 263 PGGKSTHIATLMENKGRVLSTDIYEHKLALTQENAQRLGL-TIIDVQSLDATTLGDNYAR 321
Query: 406 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDM-EELKILQDELLDAASLLVKPGGVLVYS 464
+ DKVL+DAPCSGLGVL ++AD RW R+ EDM +EL ILQ +L +A+ VK GG LVYS
Sbjct: 322 QADKVLVDAPCSGLGVLRRKADSRW-RKTEDMFKELPILQMAILKSAAECVKLGGTLVYS 380
Query: 465 TCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARL 524
TC+ +PEEN++ V FL +P+F++ A + P I H +DG F +RL
Sbjct: 381 TCTTEPEENQDVVNNFLKGNPDFALQHAGEMFPVTENKAEMVQLWPHIDH-VDGFFISRL 439
Query: 525 VR 526
VR
Sbjct: 440 VR 441
>gi|354558670|ref|ZP_08977924.1| sun protein [Desulfitobacterium metallireducens DSM 15288]
gi|353545732|gb|EHC15182.1| sun protein [Desulfitobacterium metallireducens DSM 15288]
Length = 453
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 163/451 (36%), Positives = 239/451 (52%), Gaps = 32/451 (7%)
Query: 90 DNEMGYVERTLGFRTKDLDD-RDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEP 148
D E Y L ++++D RD +L+T +V GT++ R LD+ L H S +
Sbjct: 18 DEEEAYANLLLQRELREVEDGRDRQLITQLVNGTLKNRLTLDY--ALRRHLRTPLSGLPH 75
Query: 149 LLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSL 207
+ ILRI ++++ L +P A V+E V + K AG LVN +L K++ N
Sbjct: 76 EVRWILRISAFQLLYLSKIPASAAVNEGVEMTKRRQVKYAG-LVNSVLHKVLDQGWNIRW 134
Query: 208 PLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRK 267
P P+ R R L+ YSHP WMV+RW K G EE L NN +R N +
Sbjct: 135 PNPQ-----REAVRYLSARYSHPEWMVKRWLKRYGFEETEALCQTNNEIAPLWIRTNILR 189
Query: 268 GVTRADLVMQLNLLKLQVPHELSLHLDEFIRVKTGLQN---VIQAGLLKEGLCAVQDESA 324
+TR +LV +L ++V L E + L+N + + +EGL AVQDES+
Sbjct: 190 -ITREELVDRLQKENVEV------SLGERVPESLVLENSGALDKLASFQEGLFAVQDESS 242
Query: 325 GLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQ 384
LV +++PQPG ++D CAAPGGKT ++A + QG + A DI+ ++ ++ + A+
Sbjct: 243 QLVAHILNPQPGDIVLDACAAPGGKTTHLAQKMKNQGKILAFDIHPHKVELIAQLAERLG 302
Query: 385 VNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQ 444
+ + I+ D R C KVL+DAPCSGLGV+ +RADLRWN+ E++ +L LQ
Sbjct: 303 ITN-IQAQAGDARELPGIENGTCQKVLVDAPCSGLGVIRRRADLRWNKEEEEIGKLPSLQ 361
Query: 445 DELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFV--- 501
E+L+ A+ V GG LVYSTC+++PEEN E V+AF HPEF P + L F
Sbjct: 362 LEILERAAQCVALGGELVYSTCTVEPEENFEVVKAFRKVHPEFK--PVNLLDTLPFSLDE 419
Query: 502 ------TKHGFFFSDPIKHSLDGAFAARLVR 526
+ G P +H +DG F A+ R
Sbjct: 420 EKDIRQAEKGMLQILPHRHGMDGFFLAKFQR 450
>gi|56750589|ref|YP_171290.1| sun protein [Synechococcus elongatus PCC 6301]
gi|56685548|dbj|BAD78770.1| sun protein [Synechococcus elongatus PCC 6301]
Length = 405
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 154/416 (37%), Positives = 228/416 (54%), Gaps = 18/416 (4%)
Query: 115 VTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVD 173
+T++V G +R +R LD LI LL ++ + P+L +L++G Y++ L+ +P A V
Sbjct: 1 MTELVYGCVRRQRTLDALIDLLA--QRPAAQQPPVLRTVLQLGLYQLRYLEQIPTAAAVA 58
Query: 174 ENVRLAKVALRPGAGNLVNGILRK-LVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVW 232
E V+LAK G VN ILR+ L ++ + LPLP ALA S P W
Sbjct: 59 ETVQLAKQLGLGGLSGAVNAILRQYLRQSEERDPLPLPS------DPIAALAIHQSFPDW 112
Query: 233 MVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLH 292
+V+ W+ LG +EA L W N PS LR N + R+ +Q L + +
Sbjct: 113 LVQLWSDRLGLDEAEFLCHWFNQPPSNDLRINPLR-TERSQ--VQAALEAVGIRSTPDPQ 169
Query: 293 LDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLY 352
L + +R+ + Q EG VQD SA L+ +VDPQPG++++D CAAPGGK+ +
Sbjct: 170 LPQALRLIDPPGPIRQLPGFDEGWWMVQDSSAQLIAHLVDPQPGETVLDVCAAPGGKSTH 229
Query: 353 MASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 412
+A + +G V A D + RLR + E A+ Q++S I T D R ++ D++L+
Sbjct: 230 LAELMGDRGQVIACDSSAKRLRKVQENAQRLQLSS-ITTRAIDGRQI---KGIQADRILV 285
Query: 413 DAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEE 472
DAPCSGLG+L + AD RW + + + EL LQ E+LDAA+ +KP G LVY+TC++ P E
Sbjct: 286 DAPCSGLGILHRHADGRWRQSPDSVAELAQLQSEILDAAAACLKPAGTLVYATCTLHPAE 345
Query: 473 NEERVEAFLLRHPEFSIDPADGLVP-SDFVTKHGFFFSDPIKHSLDGAFAARLVRA 527
NE +E FL RHP++ + P P + +G P +H DG F ARL R+
Sbjct: 346 NEAVIEQFLQRHPDWQMAPLAADSPFQAWAEANGTLRIWPHRHDRDGFFGARLQRS 401
>gi|375309204|ref|ZP_09774485.1| ribosomal RNA small subunit methyltransferase B (rRNA
(cytosine-C(5)-)-methyltransferase) [Paenibacillus sp.
Aloe-11]
gi|375078513|gb|EHS56740.1| ribosomal RNA small subunit methyltransferase B (rRNA
(cytosine-C(5)-)-methyltransferase) [Paenibacillus sp.
Aloe-11]
Length = 471
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 153/430 (35%), Positives = 239/430 (55%), Gaps = 28/430 (6%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L D L T++V GT+ R LD+ + +K + ++ + +LR+ Y+IV LD
Sbjct: 58 LSASDAGLATELVYGTVARRNTLDYYLNKFV--QKGTAKLQAWVRSLLRMSVYQIVYLDR 115
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPK-LEGNDRAQARALA 224
+P +AVV E V +AK G +VNG+LR + L++ + L +P L +R ++
Sbjct: 116 IPDHAVVSEAVTIAKRRGHQGISGMVNGVLRSM--LREPDKLRIPDGLSAEER-----IS 168
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKL- 283
+SHP W+V+RW K G E A + +N P+ S+R N+ +T D ++ L K
Sbjct: 169 LEHSHPQWLVKRWIKQYGVETAEAICQADNEPPTVSVRVNTT--MTSRDQLLDEMLAKGV 226
Query: 284 -QVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 342
VP +S + I V++G N+ +GL +VQDES+ LV V P+PG ++DC
Sbjct: 227 DAVPSVVSPY---GIVVRSG-GNMALTSWYTDGLLSVQDESSMLVAEAVAPEPGMLVLDC 282
Query: 343 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN 402
CAAPGGKT +MA + QG + A D++ + ++ E A +++V T+ D D
Sbjct: 283 CAAPGGKTAHMAELMKDQGRIIANDLHAHKHHLIQEQADRLGLDAV-ETVTGDALELKDR 341
Query: 403 -STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVL 461
+ D++LLDAPCSG GV+ ++ DLRW++ +D+ ++ LQ ELLD+ + L+KPGG+L
Sbjct: 342 YAPASFDRILLDAPCSGFGVIRRKPDLRWSKTEQDVRDITQLQYELLDSVAGLLKPGGIL 401
Query: 462 VYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFV-----TKHGFFFSDPIKHSL 516
VYSTC+I+P+ENE ++ FL HPE+ + A+G D + G P
Sbjct: 402 VYSTCTIEPDENEGQLTRFLSEHPEYEL--AEGHAFPDVSRDTKGAQRGSLQLLPQHFHS 459
Query: 517 DGAFAARLVR 526
DG + ARL R
Sbjct: 460 DGFYIARLRR 469
>gi|407474135|ref|YP_006788535.1| ribosomal RNA small subunit methyltransferase B [Clostridium
acidurici 9a]
gi|407050643|gb|AFS78688.1| ribosomal RNA small subunit methyltransferase B [Clostridium
acidurici 9a]
Length = 446
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 138/430 (32%), Positives = 244/430 (56%), Gaps = 25/430 (5%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSME-----PLLLQILRIGFY 159
K ++D D L+ ++V G + + Y+D++I K FS++ P+++ ILR+G Y
Sbjct: 33 KGINDLDSSLIRELVYGVLENKIYIDYVI-------KNFSTVRLKKIAPVVMNILRLGIY 85
Query: 160 EIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRA 218
+++ +D +P A V+E+V+L+K G+ VNG+LR + KDN LP ++
Sbjct: 86 QLIFMDRIPDSAAVNESVKLSKKYSHRGSQGFVNGLLRNISRNKDNIKLP-----NKNKE 140
Query: 219 QARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQL 278
+ + L+ YSHP WM+ RW K G E L + NNS P ++R N+ K + R LV L
Sbjct: 141 KVKYLSVKYSHPEWMIERWIKEYGFEFTESLCIANNSTPKLNIRVNTLK-IDRDTLVNIL 199
Query: 279 NLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQS 338
N + + + + + + I V+ + N+ + K+GL +QDES+ LV ++DP+ G
Sbjct: 200 N--QKNIDCKKTRYSTDGIIVENPI-NITELDEFKKGLFQIQDESSMLVSQIMDPKEGSL 256
Query: 339 IVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT 398
++D C+APGGKT ++A ++ +G + A DI + +++++ E ++ +N +I+ +
Sbjct: 257 VIDICSAPGGKTTHIAQKMNNKGKIIARDIYEHKIKLVKENSERLGIN-IIQYEQFNALD 315
Query: 399 FADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPG 458
++ K D L+DAPCSGLG++ ++ D++WN+ D+E + LQ +L +AS VK
Sbjct: 316 LDESLIGKADYCLVDAPCSGLGLIRRKPDIKWNKESSDIEGISELQYNILQSASKYVKSN 375
Query: 459 GVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPS--DFVTKHGFFFSDPIKHSL 516
GVLVYSTC+I+ +EN + FL + F + + L+ + + + + G+ P
Sbjct: 376 GVLVYSTCTIEKDENINLINKFLRDNENFELANFNDLIDNSEEIIKETGYLELYPNISGT 435
Query: 517 DGAFAARLVR 526
DG F A+L++
Sbjct: 436 DGFFIAKLLK 445
>gi|427731853|ref|YP_007078090.1| ribosomal RNA small subunit methyltransferase RsmB [Nostoc sp. PCC
7524]
gi|427367772|gb|AFY50493.1| ribosomal RNA small subunit methyltransferase RsmB [Nostoc sp. PCC
7524]
Length = 449
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 160/425 (37%), Positives = 225/425 (52%), Gaps = 23/425 (5%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPL-LLQILRIGFYEI-VKL 164
L D D RLVT++V G++R +R LD LI L + S +P L IL +GFY++ +
Sbjct: 34 LSDIDRRLVTELVYGSVRRQRTLDALIDQLATKK---SHQQPSDLRSILHLGFYQLRYQE 90
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLP-KLEGNDRAQARAL 223
+P A V+ V+LAK G VNG+LR+ V L +LP P KL N L
Sbjct: 91 RIPESAAVNTTVQLAKENGLAGLTGFVNGLLRQYVRLA--QTLPDPLKLPENP---VERL 145
Query: 224 ATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANS-RKGVTRADLVM-QLNLL 281
++S P W++ W + LG E +L W N P+ LR N R + + + +L
Sbjct: 146 GILHSFPDWIIEVWLEQLGLEATERLCEWMNQTPTIDLRINPLRTSIEEVETSLTSAGIL 205
Query: 282 KLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVD 341
+P+ L + +R+ + +G VQD SA LV +DPQPG+ +VD
Sbjct: 206 ARWIPN-----LPQALRLIGNTGPIKNLPGFSQGWWVVQDASAQLVSHFLDPQPGEVVVD 260
Query: 342 CCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD 401
CAAPGGKT +MA + QG ++A D RLR L E A+ ++S I+ D R +
Sbjct: 261 ACAAPGGKTTHMAELMEDQGKIWACDRTASRLRKLKENAQRLGLHS-IQICTGDSRDLSQ 319
Query: 402 -NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGV 460
N T D+VLLDAPCSGLG L + AD RW + E + EL LQ EL+ S VKPGGV
Sbjct: 320 FNHT--ADRVLLDAPCSGLGTLHRHADARWRQTPESVFELSTLQKELMSQTSNFVKPGGV 377
Query: 461 LVYSTCSIDPEENEERVEAFLLRHPEFSI-DPADGLVPSDFVTKHGFFFSDPIKHSLDGA 519
LVY+TC++ P ENE+ + FL +HP++ I P+ + + T G+ P +DG
Sbjct: 378 LVYATCTLHPAENEDVITEFLTKHPDWQIVAPSLDSPYAGYATPQGWLKVWPHCEDMDGF 437
Query: 520 FAARL 524
F RL
Sbjct: 438 FMVRL 442
>gi|427719814|ref|YP_007067808.1| sun protein [Calothrix sp. PCC 7507]
gi|427352250|gb|AFY34974.1| sun protein [Calothrix sp. PCC 7507]
Length = 451
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 161/472 (34%), Positives = 244/472 (51%), Gaps = 40/472 (8%)
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVG 120
R ++ + L +Q GA+AD+ ++R+L + +L +D RL T++V
Sbjct: 5 RQIAFIALREVQ-KGAYADVA--------------LDRSL--QKVNLSPQDRRLATELVY 47
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI-VKLDMPPYAVVDENVRLA 179
G++R +R LD LI L K P L IL +G Y++ + +PP A V+ V LA
Sbjct: 48 GSVRRQRTLDALIDQLA--TKKSHQQPPDLRAILHLGLYQLRYQERIPPSAAVNTTVELA 105
Query: 180 KVALRPGAGNLVNGILRKLVLLKD----NNSLPLPKLEGNDRAQARALATIYSHPVWMVR 235
K G VNG+LR+ + L + ++ L LP+ L ++S P W+++
Sbjct: 106 KENGFSGLTGFVNGLLRQYIRLVEERGGDDCLKLPE------NPVERLGILHSFPDWIIQ 159
Query: 236 RWTKYLGQEEAIKLMVWNNSDPSFSLRANS-RKGVTRADLVMQL-NLLKLQVPHELSLHL 293
W + LG + +L VW N P+ LR N R + ++ +Q ++ ++P+ L
Sbjct: 160 VWLEQLGFAQTEQLCVWMNRSPTIDLRINPLRTSLEAVEMALQAADVFVKRIPY-----L 214
Query: 294 DEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYM 353
+ +R+ + +EG VQD SA LV ++DPQPG+ ++D CAAPGGKT ++
Sbjct: 215 PQALRLIGSSGPIPNLPGFQEGWWTVQDSSAQLVSHLLDPQPGEVVIDVCAAPGGKTTHI 274
Query: 354 ASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLD 413
A + G V+A D RLR L E ++ + S I D R F+ V D+VLLD
Sbjct: 275 AELMGDSGKVWACDRTASRLRKLQENSRRLNLQS-IEICTGDSRHFSQFYNVG-DRVLLD 332
Query: 414 APCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEEN 473
APCSGLG L + AD RW + E + EL LQ EL+ S VK GVLVY+TC++ P EN
Sbjct: 333 APCSGLGTLHRHADARWRQTPEAIAELAKLQAELISHTSKFVKKNGVLVYATCTLHPAEN 392
Query: 474 EERVEAFLLRHPEFSIDPADGLVP-SDFVTKHGFFFSDPIKHSLDGAFAARL 524
E + AFL HP++ I P P +++ T G+ P + +DG F RL
Sbjct: 393 EGVISAFLAAHPDWEIAPPSLDSPLANYCTPEGWLKVWPHQQDMDGFFMVRL 444
>gi|304437063|ref|ZP_07397026.1| ribosomal RNA small subunit methyltransferase B [Selenomonas sp.
oral taxon 149 str. 67H29BP]
gi|304370014|gb|EFM23676.1| ribosomal RNA small subunit methyltransferase B [Selenomonas sp.
oral taxon 149 str. 67H29BP]
Length = 449
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 159/429 (37%), Positives = 233/429 (54%), Gaps = 21/429 (4%)
Query: 101 GFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYE 160
R + +RD R +T++V GT++ LD +I D K +P + ++LR+GFY+
Sbjct: 38 ALRGAAMAERDRRFLTELVYGTVKAGETLDVMIRRYVADLK---KAQPPIRELLRLGFYQ 94
Query: 161 IVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQ 219
I +D +P AV V LAK GA + VNG+LR L++ LPK G D
Sbjct: 95 IFFMDKIPSSAVCHTAVELAKKHGGKGAASFVNGVLR--TALREPQRAALPK--GRD--- 147
Query: 220 ARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLN 279
AR+LA HPVWMV+RW G EEA +L +N +LR N+ + +R L+ +L
Sbjct: 148 ARSLALRMQHPVWMVKRWLHDYGYEEAERLCRCDNESAPLTLRTNTLR-TSRTALMERLT 206
Query: 280 LLKLQVPHELSLHLDEFIRVKT-GLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQS 338
++ + SL + E I ++T G + + L+EGL VQDES+ LV ++ +PG +
Sbjct: 207 AAGVRA--DASLRVPEGILLRTHGALDALAP--LREGLAQVQDESSMLVAYILGAEPGMT 262
Query: 339 IVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRL-RILNETAKLHQVNSVIRTIHADLR 397
++D CAAPGGKT ++A + +G + A DI + +L RI+ +L S+I T D R
Sbjct: 263 VIDACAAPGGKTTHIAQRMENRGRILAFDIYEEKLGRIMRNAERLG--ISIIETQLLDAR 320
Query: 398 TFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKP 457
+ V D+VL+DAPCSGLGVL ++ D RW + D + L LQ +L +A+ VK
Sbjct: 321 EIGAHYGVCADRVLVDAPCSGLGVLRRKPDARWRKSPSDAKTLPPLQLAILASAARTVKQ 380
Query: 458 GGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLD 517
GGVLVYSTC+++ EN VEAFL H +F ++ +P T P D
Sbjct: 381 GGVLVYSTCTMERSENAAVVEAFLRGHEDFVLEETGAFLPEQ-KTADRMVQIMPETGGPD 439
Query: 518 GAFAARLVR 526
G F AR+ R
Sbjct: 440 GFFIARMRR 448
>gi|193214990|ref|YP_001996189.1| sun protein [Chloroherpeton thalassium ATCC 35110]
gi|193088467|gb|ACF13742.1| sun protein [Chloroherpeton thalassium ATCC 35110]
Length = 443
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 154/430 (35%), Positives = 224/430 (52%), Gaps = 23/430 (5%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLC-HDEKTFSSMEPLLLQILRIGFYE 160
F L+ D IV GT+R + +DH+I HD + M+ + ILRIG Y+
Sbjct: 30 FSITALEPVDRAFTMQIVYGTLREKMKIDHVIKQFYRHD---YDKMDIDVKNILRIGAYQ 86
Query: 161 IVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQ 219
++ L +P +A V+E+V LAK GNLVNG+LR + +N+L
Sbjct: 87 LLFLSKVPRWAAVNESVELAKKLKGQFLGNLVNGVLRNI-----SNNLESVDFSIQGGTF 141
Query: 220 ARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLN 279
A +A YSHP W++ RW G EA +M NN P + R N K Q
Sbjct: 142 ADQIALKYSHPRWLLERWISTYGFLEAQNIMEANNLIPRIAFRINRLKNAPEK---FQQK 198
Query: 280 LLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSI 339
LL V S+ L +F+ L G +VQ E+ L +++PQPGQ +
Sbjct: 199 LLAENVTFRKSI-LPDFVIPDRFFD---LEPFLSTGEVSVQSEAQALACRLLNPQPGQKV 254
Query: 340 VDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF 399
+D CAAPGGK+ Y+A ++ G + ++D+ +L ++ A ++ +I TI D F
Sbjct: 255 LDMCAAPGGKSTYLAEMMANAGQITSLDLYDNKLEDIDRLASALGID-IISTIKHDATRF 313
Query: 400 ADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGG 459
+ D +LLDAPC+G GVLS+RA+LRW D+ L LQ +LL+ A+ + KP
Sbjct: 314 SHEEGF--DAILLDAPCTGTGVLSRRAELRWRLSEADLAALSNLQYQLLENAAKMAKPDA 371
Query: 460 VLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDF---VTKHGFFFSDPIKHSL 516
+VYSTCSI+PEEN+ +E FL HPE+ + A ++P +F V G+ P K+
Sbjct: 372 AIVYSTCSIEPEENQVLIEKFLNAHPEWQLQSAIEILPDEFHEVVHDKGYISLLPGKNGF 431
Query: 517 DGAFAARLVR 526
DGAF+ARLVR
Sbjct: 432 DGAFSARLVR 441
>gi|339009262|ref|ZP_08641834.1| ribosomal RNA small subunit methyltransferase B [Brevibacillus
laterosporus LMG 15441]
gi|338773740|gb|EGP33271.1| ribosomal RNA small subunit methyltransferase B [Brevibacillus
laterosporus LMG 15441]
Length = 453
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 149/428 (34%), Positives = 234/428 (54%), Gaps = 25/428 (5%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L D+ LVT++V GTI+ R LD +I + ++ +LQ+LR+ Y++ LD
Sbjct: 40 LSKADVGLVTELVYGTIQRRMTLDEVIGQFV--KGGTKKLQGWVLQLLRMSLYQVRFLDR 97
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A V E V +AK G +LVNG+LR +L + + LPK + +A
Sbjct: 98 VPDRAAVHEAVEIAKKRGHKGISSLVNGVLRN-ILRQPESWEKLPK------GITKQIAV 150
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
SHP W+V+RW K G+E + NN P S+R N + T AD ++Q +K
Sbjct: 151 TESHPEWLVKRWVKQYGEETTRAICHSNNQSPMPSIRVNRLR--TTADALLQE--MKEAF 206
Query: 286 PHELSLHLD-EFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 344
P L + + +++G + + +EG C +QDES+ LV + P ++D CA
Sbjct: 207 PEAAKSELTPDALLLQSG--HAAGSSWFQEGFCTIQDESSMLVAPALHLTPNLRVLDACA 264
Query: 345 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNST 404
APGGKT +MA + QG + A D++ + ++ + AK + ++I T+ AD D +
Sbjct: 265 APGGKTTHMAELMGNQGEILACDVHPHKRELIEQNAKRLGI-TIITTMVADAADLVDRNV 323
Query: 405 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464
+ D++LLDAPCSG GV+ ++ DL+WN+ ED++ + +Q +LL+ + L+KP G LVYS
Sbjct: 324 GEFDRILLDAPCSGFGVIRRKPDLKWNKTAEDIKAISEIQYDLLERVAPLLKPDGYLVYS 383
Query: 465 TCSIDPEENEERVEAFLLRHPEFSIDP--ADGLVPSDFVTK----HGFFFSDPIKHSLDG 518
TC+ID +EN++ VE F+ HPE+ +D A+ L P+ K G+ P S DG
Sbjct: 384 TCTIDSQENQDVVERFIAEHPEYELDKSLAEDL-PTGLTEKIDASKGYVQILPHHFSSDG 442
Query: 519 AFAARLVR 526
F AR+ R
Sbjct: 443 FFIARIKR 450
>gi|425436930|ref|ZP_18817360.1| Ribosomal RNA small subunit methyltransferase B [Microcystis
aeruginosa PCC 9432]
gi|389678290|emb|CCH92851.1| Ribosomal RNA small subunit methyltransferase B [Microcystis
aeruginosa PCC 9432]
Length = 446
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 159/442 (35%), Positives = 230/442 (52%), Gaps = 18/442 (4%)
Query: 90 DNEMGYVERTLG--FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSME 147
D Y +R L L+ D L T+IV G +R +R LD L+ L +KT +
Sbjct: 16 DRSSAYPDRALDRHLSASSLNCLDKALTTEIVYGIMRRQRTLDALLDRL--GKKTAAQQP 73
Query: 148 PLLLQILRIGFYEIVKL-DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNS 206
P L +IL IG Y++ L +PP A V+ V L K++ +VNG+LR+ + L N
Sbjct: 74 PDLRRILHIGLYQLRYLSQIPPSAAVNTAVELTKISHLGKLAAVVNGMLRQYLRLTANGD 133
Query: 207 LPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSR 266
PL E A L ++S P W+V+ W E +L W N P +R N
Sbjct: 134 DPLLLPENT----ASRLGILHSFPDWLVQLWLDRFSVTETEQLCQWFNRSPDLDIRINPL 189
Query: 267 KGVTRADLVMQLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGL 326
K +R L +L + H L L R+ +GL N+ + + G +QD SA L
Sbjct: 190 K-TSREALENELESANITFHH---LKLPLACRLTSGLGNIERLEGFRAGNYTLQDISAQL 245
Query: 327 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVN 386
V ++DPQPG++I+D CAAPGGKT ++A + QG + A D RLR L K +
Sbjct: 246 VTYLLDPQPGETIIDACAAPGGKTTHIAELMGDQGRILACDQTASRLRQLEANIKRLDLK 305
Query: 387 SVIRTIH-ADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQD 445
++ IH D R + D+VL+DAPCSGLG L KR D+RW + E++ L Q
Sbjct: 306 AI--EIHLGDSRDRPQWCGI-ADRVLIDAPCSGLGTLHKRPDIRWRQTPENLPVLAKRQG 362
Query: 446 ELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSI-DPADGLVPSDFVTKH 504
ELL +A+ VKP G+LVY+TC+++P ENE +E FL HP++ + P S++ T+
Sbjct: 363 ELLASAATWVKPKGILVYATCTLNPLENERVIEQFLAAHPDWKMATPDSNSCVSEYYTET 422
Query: 505 GFFFSDPIKHSLDGAFAARLVR 526
G P +H+ DG F A+LV+
Sbjct: 423 GAIEVLPHRHNQDGFFMAKLVK 444
>gi|334128608|ref|ZP_08502491.1| RNA methyltransferase Sun [Centipeda periodontii DSM 2778]
gi|333386699|gb|EGK57909.1| RNA methyltransferase Sun [Centipeda periodontii DSM 2778]
Length = 448
Score = 233 bits (593), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 150/426 (35%), Positives = 224/426 (52%), Gaps = 17/426 (3%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
R L +RD R +T++V G ++ LD+ I D +P + ++LR+GFY+I
Sbjct: 38 LREIKLTERDRRFLTELVYGVVKAGESLDYRIGKYVAD---IRKAQPAIRELLRLGFYQI 94
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
++D +PP A D V LAK R GA + VNG+LR + + + P G D A
Sbjct: 95 FEMDRVPPSAACDTAVELAKKHGRRGADSFVNGVLRAALREPERAAYPT----GRD---A 147
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
+LA HPVWMV RW + G E +L NN+ S+R N+ + R L+ Q
Sbjct: 148 SSLALRTGHPVWMVERWMRAYGYERTEELCHCNNTSAPLSMRVNTLR-TNRPALMEQFTA 206
Query: 281 LKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIV 340
QV SL+ E + V + + L+ GL VQDES+ LV V+ P+PG +++
Sbjct: 207 AGAQV--RASLYAPEGV-VLDAHGALDELTPLRMGLAQVQDESSMLVAHVLAPEPGMTVI 263
Query: 341 DCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 400
D CAAPGGKT ++A + +G + A DI + ++R + A+ + S++ D R
Sbjct: 264 DACAAPGGKTTHIAQRMENRGRILAFDIYEEKIRRIERNAQRLGI-SIMEAQMCDARAIG 322
Query: 401 DNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGV 460
+ D+VL+DAPCSGLGVL ++ D RW + ED++ L LQ +L +A+ VK GG+
Sbjct: 323 AAYAGQADRVLVDAPCSGLGVLRRKPDARWKKSPEDVKTLPPLQRAILASAAEAVKKGGI 382
Query: 461 LVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAF 520
LVYSTC+++ EN V FL H +F ++ G +P T+ P DG F
Sbjct: 383 LVYSTCTMEECENAAIVANFLRTHTDFVLEETGGFLPVQKTTECMVQIM-PETDGPDGFF 441
Query: 521 AARLVR 526
AR+ R
Sbjct: 442 IARMRR 447
>gi|220906120|ref|YP_002481431.1| sun protein [Cyanothece sp. PCC 7425]
gi|219862731|gb|ACL43070.1| sun protein [Cyanothece sp. PCC 7425]
Length = 443
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 154/437 (35%), Positives = 230/437 (52%), Gaps = 22/437 (5%)
Query: 96 VERTLGFRTKDL-DDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQIL 154
VER+L R L ++R+ RL T++V G +R +R LD L+ L +K P L +L
Sbjct: 24 VERSL--RQHPLTEERERRLATELVYGCVRRQRTLDALVDQLA--KKPARQQPPDLRTLL 79
Query: 155 RIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLK-DNNSLPLPKL 212
+G Y++ L+ +P A V V L K G VNG+LR+ + + L LP
Sbjct: 80 HLGLYQLRYLNHIPANAAVHTTVELVKHRGLAGLAGFVNGLLRQYIRQSAGGDPLSLP-- 137
Query: 213 EGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANS-RKGVTR 271
D Q LA ++S+P W+V W + +G E +L W N PS LR N + + +
Sbjct: 138 --TDPVQQ--LALLHSYPDWIVANWMEQIGTTETDQLCQWLNRPPSIDLRINPLQTSIEQ 193
Query: 272 ADLVMQLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVV 331
Q + +Q L + +R+ + Q +G +VQD SA LV ++
Sbjct: 194 VGSAFQSAGVSVQP----LAGLPQGLRLTEPSGAIEQLPGFAQGWWSVQDASAQLVSHLL 249
Query: 332 DPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRT 391
+PQPG+ I+D CAAPGGK+ ++A + +G+V+A D RL+ L + + ++NS IR
Sbjct: 250 NPQPGEVIIDACAAPGGKSTHIAELIGDKGIVWACDRTPSRLKKLEQNRQRLKLNS-IRI 308
Query: 392 IHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAA 451
D R T + D+VLLDAPCSGLG L + AD RW + E + +L LQ ELL
Sbjct: 309 CQGDSRM--SEFTAQADRVLLDAPCSGLGTLHRHADARWRQTPESVAQLAQLQTELLHHT 366
Query: 452 SLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSID-PADGLVPSDFVTKHGFFFSD 510
+ VKPGG LVY+TC++ P ENE ++ FL HP++ I P +D++ G+
Sbjct: 367 ATWVKPGGTLVYATCTLHPTENEAVIQQFLAHHPQWQIQAPRHPPFSADWLAPQGWIKVW 426
Query: 511 PIKHSLDGAFAARLVRA 527
P +H +DG F RL R+
Sbjct: 427 PHRHQMDGFFMVRLGRS 443
>gi|425464664|ref|ZP_18843974.1| Ribosomal RNA small subunit methyltransferase B [Microcystis
aeruginosa PCC 9809]
gi|389833279|emb|CCI22350.1| Ribosomal RNA small subunit methyltransferase B [Microcystis
aeruginosa PCC 9809]
Length = 450
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 159/442 (35%), Positives = 230/442 (52%), Gaps = 18/442 (4%)
Query: 90 DNEMGYVERTLG--FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSME 147
D Y +R L L+ D L T+IV G +R +R LD L+ L +KT +
Sbjct: 16 DRSSAYPDRALDRHLSASSLNCLDKALTTEIVYGIMRRQRTLDALLDRL--GKKTAAQQP 73
Query: 148 PLLLQILRIGFYEIVKL-DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNS 206
P L +IL IG Y++ L +PP A V+ V L K++ +VNG+LR+ + L N
Sbjct: 74 PDLRRILHIGLYQLRYLSQIPPSAAVNTAVELTKISHLGKLAAVVNGMLRQYLRLTANGD 133
Query: 207 LPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSR 266
PL E A L ++S P W+V+ W E +L W N P +R N
Sbjct: 134 DPLLLPENT----ASRLGILHSFPDWLVQLWLDRFSVTETEQLCQWFNRSPDLDIRINPL 189
Query: 267 KGVTRADLVMQLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGL 326
K +R L +L + H L L R+ +GL N+ + + G +QD SA L
Sbjct: 190 K-TSREALENELESANITFHH---LKLPLACRLTSGLGNIERLEGFRAGNYTLQDISAQL 245
Query: 327 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVN 386
V ++DPQPG++I+D CAAPGGKT ++A + +G + A D RLR L K +
Sbjct: 246 VTYLLDPQPGETIIDACAAPGGKTTHIAELMGDRGRILACDQTASRLRQLEANIKRLDLK 305
Query: 387 SVIRTIH-ADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQD 445
++ IH D R + D+VL+DAPCSGLG L KR D+RW + E++ L Q
Sbjct: 306 AI--EIHLGDSRDRPQWCGI-ADRVLIDAPCSGLGTLHKRPDIRWRQTPENLPVLAKRQG 362
Query: 446 ELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSI-DPADGLVPSDFVTKH 504
ELL +A+ VKP G+LVY+TC++DP ENE +E FL HP++ + P S++ T+
Sbjct: 363 ELLASAATWVKPKGILVYATCTLDPLENERVIEQFLAAHPDWKMATPDSNSCVSEYYTET 422
Query: 505 GFFFSDPIKHSLDGAFAARLVR 526
G P +H+ DG F A+LV+
Sbjct: 423 GAIEVLPHRHNQDGFFMAKLVK 444
>gi|425450552|ref|ZP_18830377.1| Ribosomal RNA small subunit methyltransferase B [Microcystis
aeruginosa PCC 7941]
gi|389768554|emb|CCI06369.1| Ribosomal RNA small subunit methyltransferase B [Microcystis
aeruginosa PCC 7941]
Length = 446
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 160/442 (36%), Positives = 230/442 (52%), Gaps = 18/442 (4%)
Query: 90 DNEMGYVERTLG--FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSME 147
D Y +R L L+ D L T+IV GT+R +R LD L+ L +KT +
Sbjct: 16 DRSSAYPDRALDRHLSASSLNCLDKALTTEIVYGTMRRQRTLDALLDRL--GKKTAAQQP 73
Query: 148 PLLLQILRIGFYEIVKL-DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNS 206
P L +IL IG Y++ L +PP A V+ V L K++ +VNG+LR+ + L N
Sbjct: 74 PDLRRILHIGLYQLRYLSQIPPSAAVNTAVELTKISHLGKLAAVVNGMLRQYLRLTANGD 133
Query: 207 LPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSR 266
PL E A L ++S P W+V+ W E +L W N P +R N
Sbjct: 134 DPLILPENT----ASRLGILHSFPDWLVQLWLDRFSVTETEQLCQWFNRSPDLDIRINPL 189
Query: 267 KGVTRADLVMQLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGL 326
K +R L +L + H L L R+ +GL N+ + + G +QD SA L
Sbjct: 190 K-TSREALENELESANITFHH---LKLPLACRLTSGLGNIERLEGFRAGNYTLQDISAQL 245
Query: 327 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVN 386
V ++DPQPG++I+D CAAPGGKT ++A + QG + A D RLR L K +
Sbjct: 246 VTYLLDPQPGETIIDACAAPGGKTTHIAELMGDQGRILACDQTASRLRQLEANIKRLDLK 305
Query: 387 SVIRTIH-ADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQD 445
++ IH D R + D+VL+DAPCSGLG L K D+RW + E++ L Q
Sbjct: 306 AI--EIHLGDSRDRPQWCGI-ADRVLIDAPCSGLGTLHKLPDIRWRQTPENLPVLAKRQG 362
Query: 446 ELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSI-DPADGLVPSDFVTKH 504
ELL +A+ VKP G+LVY+TC+++P ENE +E FL HP++ I P S++ T+
Sbjct: 363 ELLASAATWVKPKGILVYATCTLNPLENEGVIEQFLAAHPDWKIATPDSNSCVSEYYTET 422
Query: 505 GFFFSDPIKHSLDGAFAARLVR 526
G P +H+ DG F A+LV+
Sbjct: 423 GAIEVLPHRHNQDGFFMAKLVK 444
>gi|425445544|ref|ZP_18825572.1| Ribosomal RNA small subunit methyltransferase B [Microcystis
aeruginosa PCC 9443]
gi|389734455|emb|CCI01900.1| Ribosomal RNA small subunit methyltransferase B [Microcystis
aeruginosa PCC 9443]
Length = 446
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 159/442 (35%), Positives = 230/442 (52%), Gaps = 18/442 (4%)
Query: 90 DNEMGYVERTLG--FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSME 147
D Y +R L L+ D L T+IV G IR +R LD L+ L +KT +
Sbjct: 16 DRSSAYPDRALDRHLSASSLNCLDKALTTEIVYGIIRRQRTLDALLDRL--GKKTAAQQP 73
Query: 148 PLLLQILRIGFYEIVKL-DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNS 206
P L +IL IG Y++ L +PP A V+ V L K++ +VNG+LR+ + L N
Sbjct: 74 PDLRRILHIGLYQLRYLSQIPPSAAVNTAVELTKISHLGKLAAVVNGMLRQYLRLTANGD 133
Query: 207 LPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSR 266
PL E A L ++S P W+V+ W E +L W N P +R N
Sbjct: 134 DPLILPENT----ASRLGILHSFPDWLVQLWLDRFSVTETEQLCQWFNRSPDLDIRINPL 189
Query: 267 KGVTRADLVMQLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGL 326
K +R L +L + H L L R+ +GL N+ + + G +QD SA L
Sbjct: 190 K-TSREALENELESANITFNH---LKLPLACRLTSGLGNIERLEGFRAGNYTLQDISAQL 245
Query: 327 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVN 386
V ++DPQPG++I+D CAAPGGKT ++A + +G + A D RLR L K +
Sbjct: 246 VTYLLDPQPGETIIDACAAPGGKTTHIAELMGDRGRILACDQTASRLRQLEANIKRLDLK 305
Query: 387 SVIRTIH-ADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQD 445
++ IH D R + D+VL+DAPCSGLG L KR D+RW + E++ L Q
Sbjct: 306 AI--EIHLGDSRDRPQWCGI-ADRVLIDAPCSGLGTLHKRPDIRWRQTPENLPVLAKRQG 362
Query: 446 ELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVP-SDFVTKH 504
ELL +A+ VKP G+LVY+TC+++P ENE +E FL HP++ + D S++ T+
Sbjct: 363 ELLASAATWVKPKGILVYATCTLNPLENERVIEQFLAAHPDWKMASPDSTSSFSEYYTET 422
Query: 505 GFFFSDPIKHSLDGAFAARLVR 526
G P +H+ DG F A+LV+
Sbjct: 423 GAIEVLPHRHNQDGFFMAKLVK 444
>gi|428215873|ref|YP_007089017.1| ribosomal RNA small subunit methyltransferase RsmB [Oscillatoria
acuminata PCC 6304]
gi|428004254|gb|AFY85097.1| ribosomal RNA small subunit methyltransferase RsmB [Oscillatoria
acuminata PCC 6304]
Length = 456
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 163/470 (34%), Positives = 235/470 (50%), Gaps = 30/470 (6%)
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVG 120
R ++ + L + G FAD+ K ++++ L D RL T++V
Sbjct: 5 RQIAFLALRDVHRRGVFADIALDK----------WLQKAKQQEESALIPSDRRLATELVY 54
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQI-LRIGFYEIVKLD-MPPYAVVDENVRL 178
G +R R LD +I L K S+ +P L+I L +G Y++ L +P A V+ V L
Sbjct: 55 GCVRRMRTLDAIIDQLA---KKKSANQPDDLRIILHLGLYQLRYLSTIPASAAVNTTVEL 111
Query: 179 AKVALRPGAGNLVNGILRKLVLL---KDNNSLPLPKLEGNDRAQARALATIYSHPVWMVR 235
K G VNG+LR+ + L ++ + L LP E L ++S P W+V
Sbjct: 112 TKDNKFKGLAGFVNGLLRQYIRLAESENTDPLVLPDDE------ISRLGLLHSFPDWIVA 165
Query: 236 RWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDE 295
W LG E KL W N P+ LR N K T ++ +QV HL +
Sbjct: 166 NWCDRLGVAETEKLCTWFNQSPTLDLRINPLK-TTLEEVETAFQSAGVQVAR--LPHLPQ 222
Query: 296 FIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMAS 355
+R+ +G + + G +QD SA LV ++++ +PGQ +D CAAPGGKT ++A
Sbjct: 223 ALRLCSGAGAIENLPGYQAGWWTIQDSSAQLVGSLLEAKPGQVAIDACAAPGGKTTHLAE 282
Query: 356 CLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAP 415
+ G ++A D RL+ + E A Q+ S I+T+ D R F D VLLDAP
Sbjct: 283 MMGDTGTIWACDKAPSRLKKVKENADRLQLQS-IQTLSGDSRNFTQFHQT-ADWVLLDAP 340
Query: 416 CSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEE 475
CSGLG L +RAD RW + E+++EL LQ ELL + VKPGG LVY+TC+I P+ENEE
Sbjct: 341 CSGLGTLHRRADARWRQTPENIQELSQLQGELLAETANWVKPGGHLVYATCTIHPKENEE 400
Query: 476 RVEAFLLRHPEFSIDPADGLVP-SDFVTKHGFFFSDPIKHSLDGAFAARL 524
+ FL H ++ IDP P + F G+ P H +DG F RL
Sbjct: 401 VILGFLASHADWEIDPPTTDSPAAHFAQPEGWITVWPHHHDMDGFFMVRL 450
>gi|392957476|ref|ZP_10322999.1| 16S rRNA methyltransferase B [Bacillus macauensis ZFHKF-1]
gi|391876439|gb|EIT85036.1| 16S rRNA methyltransferase B [Bacillus macauensis ZFHKF-1]
Length = 457
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 139/391 (35%), Positives = 230/391 (58%), Gaps = 21/391 (5%)
Query: 104 TKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVK 163
+ L+ +D+ L+T++V GT + + LD+ + K +EP +L +LR+ Y+++
Sbjct: 33 SSQLNAKDVGLLTELVYGTTQRKNTLDYYLTPFI--AKGLHKLEPWVLVLLRVSLYQMIF 90
Query: 164 LD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARA 222
LD +P +A+++E V +AK G LVNG+LRK+ +P L R +
Sbjct: 91 LDKIPDHAILNEAVEIAKKRGHKGISGLVNGVLRKV----QRQGVPSLDLV---RDEDER 143
Query: 223 LATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLK 282
LA YS P W+++RW G+EEA K+ + + S + R N +KG +R +L +L
Sbjct: 144 LALRYSLPTWLMKRWVAQYGREEAEKMAASSITPSSVTGRVNVQKG-SREELQKRLQTEG 202
Query: 283 -LQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVD 341
+ V EL+ E I+++ G ++ Q +G +QDES+ LV + P+ ++I+D
Sbjct: 203 VMTVEGELA---PEAIQLEKG--SLSQTQSFSQGYVTIQDESSMLVARGLGPKESETILD 257
Query: 342 CCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAK-LHQVNSVIRTIHADLRTFA 400
CAAPGGKT ++A L+ G V A+D++K +++++ E AK LH N I T D R
Sbjct: 258 ACAAPGGKTTHIAELLNNSGSVVALDLHKHKVKLIEEQAKRLHLTN--IETKAMDSRKAP 315
Query: 401 DN-STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGG 459
++ D++L+DAPC+G GV+ K+ DL+W+++ ED+ + +Q E+L++ + L+KPGG
Sbjct: 316 EHFPPASFDRILVDAPCTGFGVIRKKPDLKWSKKEEDIHRISTIQMEILNSVATLLKPGG 375
Query: 460 VLVYSTCSIDPEENEERVEAFLLRHPEFSID 490
LVYSTC++D EEN+E + FL HPEF+ D
Sbjct: 376 TLVYSTCTVDHEENQEVAQQFLATHPEFTWD 406
>gi|427711378|ref|YP_007060002.1| ribosomal RNA small subunit methyltransferase RsmB [Synechococcus
sp. PCC 6312]
gi|427375507|gb|AFY59459.1| ribosomal RNA small subunit methyltransferase RsmB [Synechococcus
sp. PCC 6312]
Length = 458
Score = 232 bits (591), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 157/428 (36%), Positives = 229/428 (53%), Gaps = 28/428 (6%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQ-ILRIGFYEIVKL- 164
L+ D LVT++V GT+R +R LD LI LC +PL L+ ILR+G Y++ L
Sbjct: 48 LNSLDRGLVTELVYGTVRRQRTLDALIDHLCRQRN-----QPLNLRLILRLGLYQLRYLA 102
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P A V+ +V LAK G +VNG+LR + + + PLP+L LA
Sbjct: 103 QIPAAAAVNTSVELAKGCGLTGLAGVVNGVLRAYLRISQDRE-PLPELADP----LLNLA 157
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQ 284
S P W+V+ W L E L + N P+ LR NS + + D++ L K
Sbjct: 158 VQESFPDWIVQAWAAQLEMPETTALCQFFNQTPTIDLRVNSLQA-SPEDVLTALATAK-- 214
Query: 285 VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 344
+P +L IR+ GL + +G +VQD +A LV ++DPQPG++I+D CA
Sbjct: 215 IPATPLANLPGGIRLGAGLGAIAALPGYDKGWWSVQDAAAQLVTYLLDPQPGETIIDACA 274
Query: 345 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNST 404
APGGKT ++A + +G V A+D RLR L + + Q+ + A L AD++
Sbjct: 275 APGGKTTHIAERMQDRGTVIALDRVASRLRKLKQNQQRLQLTC----LQAQL---ADSTQ 327
Query: 405 VK-----CDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGG 459
++ D+VL+DAPCSGLG L + AD RW + + EL LQ +LL+ A+ VKPGG
Sbjct: 328 IQTMLPLADRVLIDAPCSGLGTLHRHADARWRQTPTTLAELVSLQAQLLENAATWVKPGG 387
Query: 460 VLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVP-SDFVTKHGFFFSDPIKHSLDG 518
++VY+TCS+ P+EN+ +VE FL HP + I P P D G+ + P + +DG
Sbjct: 388 LMVYATCSLHPDENQTQVENFLKAHPNWHIAPLPLPFPRPDLQQAQGWLQAWPQRQQMDG 447
Query: 519 AFAARLVR 526
F RL R
Sbjct: 448 FFMVRLQR 455
>gi|440755727|ref|ZP_20934929.1| ribosomal RNA small subunit methyltransferase B [Microcystis
aeruginosa TAIHU98]
gi|440175933|gb|ELP55302.1| ribosomal RNA small subunit methyltransferase B [Microcystis
aeruginosa TAIHU98]
Length = 450
Score = 232 bits (591), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 160/443 (36%), Positives = 232/443 (52%), Gaps = 20/443 (4%)
Query: 90 DNEMGYVERTLG--FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSME 147
D Y +R L L+ D L T+IV GT+R +R LD L+ L +KT +
Sbjct: 16 DRSSAYPDRALDRHLSASSLNCLDKALTTEIVYGTMRRQRTLDALLDRL--GKKTAAQQP 73
Query: 148 PLLLQILRIGFYEIVKL-DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNS 206
P L +IL IG Y++ L +PP A V+ V L K++ +VNG+LR+ + L N
Sbjct: 74 PDLRRILHIGLYQLRYLSQIPPSAAVNTAVELTKISHLGKLAAVVNGMLRQYLRLTANGD 133
Query: 207 LPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSR 266
PL E A L ++S P W+V+ W E +L W N P +R N
Sbjct: 134 DPLLLPENT----ASRLGILHSFPDWLVQLWLDRFSVTETEQLCQWFNRSPDLDIRINPL 189
Query: 267 KGVTRADLVMQLNLLKLQVP-HELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAG 325
K A ++ +L + H L L L R+ +GL N+ + + G +QD SA
Sbjct: 190 KTSLEA---LENDLESANITFHHLKLPL--ACRLTSGLGNIERLEGFRAGNYTLQDISAQ 244
Query: 326 LVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQV 385
LV ++DPQPG++I+D CAAPGGKT ++A + +G + A D RLR L K +
Sbjct: 245 LVTYLLDPQPGETIIDACAAPGGKTTHIAELMGDRGRILACDQTPSRLRQLEANIKRLDL 304
Query: 386 NSVIRTIH-ADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQ 444
++ IH D R + D+VL+DAPCSGLG L KR D+RW + E++ L Q
Sbjct: 305 KAI--EIHLGDSRDRPQWCGI-ADRVLIDAPCSGLGTLHKRPDIRWRQTPENLPVLAKRQ 361
Query: 445 DELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSI-DPADGLVPSDFVTK 503
ELL +A+ VKP G+LVY+TC++DP ENE +E FL HP++ + P S++ T+
Sbjct: 362 GELLASAATWVKPKGILVYATCTLDPLENERVIEQFLAAHPDWKMATPDSNSCVSEYYTE 421
Query: 504 HGFFFSDPIKHSLDGAFAARLVR 526
G P +H+ DG F A+LV+
Sbjct: 422 TGAIEVLPHRHNQDGFFMAKLVK 444
>gi|390453286|ref|ZP_10238814.1| ribosomal RNA small subunit methyltransferase B (rRNA
(cytosine-C(5)-)-methyltransferase) [Paenibacillus
peoriae KCTC 3763]
Length = 471
Score = 232 bits (591), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 153/430 (35%), Positives = 237/430 (55%), Gaps = 28/430 (6%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L D L T++V GT+ R LD+ + +K + ++ + +LR+ Y+IV LD
Sbjct: 58 LSASDAGLATELVYGTVARRNTLDYYLNKFV--QKGTAKLQAWVRSLLRMSVYQIVYLDR 115
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPK-LEGNDRAQARALA 224
+P +AVV E V +AK G +VNG+LR + L++ + L +P L +R ++
Sbjct: 116 IPDHAVVSEAVAIAKRRGHQGISGMVNGVLRSM--LREPDKLRIPDGLSAEER-----IS 168
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKL- 283
+SHP W+V+RW K G E A + NN P+ S+R N+ +T D ++ L K
Sbjct: 169 LEHSHPQWLVKRWIKQYGVETAEAICQANNEPPAVSVRVNTT--MTSRDQLLDEMLAKGV 226
Query: 284 -QVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 342
VP +S + I V++G N+ +GL +VQDES+ LV V P+PG ++DC
Sbjct: 227 NAVPSAVSPY---GIVVRSG-GNMALTSWYTDGLLSVQDESSMLVAEAVAPEPGMLVLDC 282
Query: 343 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN 402
CAAPGGKT +MA + QG + A D++ + ++ E A + +V T+ D D
Sbjct: 283 CAAPGGKTAHMAELMKDQGRIIANDLHAHKHHLIQEQADRLGLEAV-ETVTGDALELKDR 341
Query: 403 -STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVL 461
+ D++LLDAPCSG GV+ ++ DLRW++ +D+ ++ LQ ELLD+ + L+KPGG+L
Sbjct: 342 YAPASFDRILLDAPCSGFGVIRRKPDLRWSKTEQDVRDITQLQHELLDSVAGLLKPGGIL 401
Query: 462 VYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFV-----TKHGFFFSDPIKHSL 516
VYSTC+I+P+ENE ++ FL H E+ + A+G D + G P
Sbjct: 402 VYSTCTIEPDENEGQLTRFLGEHSEYEL--AEGHSFPDMSRDTKGAQSGSLQLLPQHFHS 459
Query: 517 DGAFAARLVR 526
DG + ARL R
Sbjct: 460 DGFYIARLRR 469
>gi|225181330|ref|ZP_03734774.1| sun protein [Dethiobacter alkaliphilus AHT 1]
gi|225167911|gb|EEG76718.1| sun protein [Dethiobacter alkaliphilus AHT 1]
Length = 451
Score = 232 bits (591), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 151/426 (35%), Positives = 230/426 (53%), Gaps = 19/426 (4%)
Query: 104 TKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVK 163
+ LD RD RL +I G I ++ LD LI + + ++ + QILRIGFY++
Sbjct: 37 SHSLDPRDKRLAAEITYGVITYKLTLDWLIEKVSG--RPIKKLDKPIHQILRIGFYQLFY 94
Query: 164 LD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARA 222
LD +PP A V V L K + G VNG++R + KD+ LP P + A
Sbjct: 95 LDRVPPAAAVHATVELVKKGKKRGLAPFVNGVMRGALRKKDH--LPWPD---KKKDSANY 149
Query: 223 LATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLK 282
L+ YSHP+W+VRRW G EEA KL+ NN S+R N+ + R L+ +L
Sbjct: 150 LSVRYSHPLWLVRRWLNRYGPEEAEKLVAANNQAAPLSIRVNTLR-TDRDTLLSELTAAG 208
Query: 283 LQ-VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVD 341
++ VP ++ + + ++G + + +EG VQ ESA L V+DPQ G +++D
Sbjct: 209 VEAVPS--TVVPEGALLTRSG--RLTELAPYREGRFQVQGESAMLTSRVLDPQAGDAVLD 264
Query: 342 CCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD 401
C+APGGKT ++A ++ G + A+DI+ RL ++ + V+ ++RT D R A
Sbjct: 265 GCSAPGGKTTHLAQLMNNSGDILALDIHPHRLELVKANCRRMGVD-IVRTQCLDAREIAK 323
Query: 402 NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVL 461
+ D +LLD PCSG GV+ ++ DL+W R +D+ +L +Q ++L AA+ ++KPGG L
Sbjct: 324 ENPDSFDCILLDVPCSGFGVIRRKPDLKWRRSEDDIRKLAHVQCDMLKAAAAVLKPGGTL 383
Query: 462 VYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDF---VTKHGFFFSDPIKHSLDG 518
VYSTC+ +PEE +E VE L + D +P D+ K G P H +DG
Sbjct: 384 VYSTCTNEPEETDEVVEELLKNQDDMVPDDLRPYLPQDWQQDAGKTGIHLL-PHIHGVDG 442
Query: 519 AFAARL 524
F +RL
Sbjct: 443 FFISRL 448
>gi|427725626|ref|YP_007072903.1| sun protein [Leptolyngbya sp. PCC 7376]
gi|427357346|gb|AFY40069.1| sun protein [Leptolyngbya sp. PCC 7376]
Length = 450
Score = 232 bits (591), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 159/473 (33%), Positives = 238/473 (50%), Gaps = 29/473 (6%)
Query: 57 VSPHRAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVT 116
+S R ++ + L +I + AF D+ ++R L R L D LV
Sbjct: 1 MSSARQLAFLALRQIMYHKAFTDVA--------------LDRVL--RKSGLRGSDRGLVA 44
Query: 117 DIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDEN 175
++V GT+R ++ LD +I + +K P L +L++G Y+I LD +P A V+ +
Sbjct: 45 ELVYGTVRRQKTLDAIINQV--GKKPIEQQPPDLRVLLQLGLYQIRYLDSIPASAAVNTS 102
Query: 176 VRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVR 235
V LAK +VNG LR+ + L+D N PL E AQ A YS P W+++
Sbjct: 103 VELAKENKLGQLAGVVNGCLRQYLRLQDKNGDPLILPE----AQPEKFALQYSFPEWLIK 158
Query: 236 RWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDE 295
W G+ E +L W N + +R N K +Q+ L V E+ +L
Sbjct: 159 TWLGQFGEAETAQLCEWFNQPSTLDIRINPLKNSVEH---VQVLLNNAGVKCEVIANLPN 215
Query: 296 FIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMAS 355
+R+ + KEG +QD SA LV ++DPQP + I+D CAAPGGKT ++A
Sbjct: 216 ALRLTEKRGMIQDLPGYKEGWWTIQDASAQLVSHLLDPQPREVIIDACAAPGGKTTHIAE 275
Query: 356 CLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAP 415
+ +G ++A D K R+ + + A+ + S+IRT+ D R + + D+VLLD P
Sbjct: 276 LMGDEGTIWASDKYKARINKIEQNARRLNL-SMIRTLIGDSREYPQFRQM-ADRVLLDVP 333
Query: 416 CSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEE 475
CSGLG L KR D+RW + + + EL Q ELL A S VKP G LVYSTC+I+P EN
Sbjct: 334 CSGLGTLHKRPDIRWQQNPDKIAELTQFQLELLQAGSKWVKPSGSLVYSTCTINPAENVA 393
Query: 476 RVEAFLLRHPEFSIDPADGLVPS-DFVTKHGFFFSDPIKHSLDGAFAARLVRA 527
FL +P + I D P+ F ++ G+ P KH +DG F + ++
Sbjct: 394 IANKFLKENPNWHIAKPDENSPAYSFASEEGWVEVLPHKHDMDGFFMVKFQKS 446
>gi|357059538|ref|ZP_09120380.1| ribosomal RNA small subunit methyltransferase B [Selenomonas
infelix ATCC 43532]
gi|355371615|gb|EHG18959.1| ribosomal RNA small subunit methyltransferase B [Selenomonas
infelix ATCC 43532]
Length = 448
Score = 231 bits (590), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 150/426 (35%), Positives = 223/426 (52%), Gaps = 17/426 (3%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
R L +RD R +T++V G + LD++I D +P + ++LR+GFY+I
Sbjct: 38 LREVQLPERDRRFLTELVYGVTKAGASLDYMIGCYVAD---IRKAQPAIRELLRLGFYQI 94
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
+D +PP A + V LAK R GA VNG+LR + + + P EG D A
Sbjct: 95 FCMDRVPPSAACNTAVELAKKHGRRGADAFVNGVLRAALREPERAAFP----EGRD---A 147
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
ALA HP WMV RW + G E +L NN+ S+R N+ + R L+ QL
Sbjct: 148 YALALRTWHPKWMVERWMRTYGYERTEELCRCNNTSAPLSVRVNTLR-TNRDALMEQLTA 206
Query: 281 LKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIV 340
QV + D + G + + L+EGL VQDES+ LV ++ +PG +++
Sbjct: 207 AGAQVRASAWVP-DGIVLAAHGALD--ELAPLREGLAQVQDESSMLVAHILGAEPGMTVI 263
Query: 341 DCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 400
D CAAPGGKT ++A + +G + A DI + ++R + AK + S+I T D R
Sbjct: 264 DACAAPGGKTTHIAQRMENRGRILAFDIYEEKMRRIERNAKRLGI-SMIETQMRDAREIG 322
Query: 401 DNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGV 460
+ D+VL+DAPCSGLGVL ++ D RW + + D + L LQ ++L +A+ VK GG+
Sbjct: 323 AAYAEQADRVLVDAPCSGLGVLRRKPDARWKKSVRDAKTLPSLQRDILASAARAVKHGGI 382
Query: 461 LVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAF 520
LVYSTC+++ EN V AFL H +F+++ +P T+ P DG F
Sbjct: 383 LVYSTCTMEECENAAVVRAFLETHADFALEETGAFLPMQKTTERMVQIM-PETDGPDGFF 441
Query: 521 AARLVR 526
AR+ R
Sbjct: 442 IARMRR 447
>gi|425468533|ref|ZP_18847544.1| Ribosomal RNA small subunit methyltransferase B [Microcystis
aeruginosa PCC 9701]
gi|389884794|emb|CCI34927.1| Ribosomal RNA small subunit methyltransferase B [Microcystis
aeruginosa PCC 9701]
Length = 450
Score = 231 bits (589), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 159/442 (35%), Positives = 230/442 (52%), Gaps = 18/442 (4%)
Query: 90 DNEMGYVERTLG--FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSME 147
D Y +R L L+ D L T+IV G IR +R LD L+ L +KT +
Sbjct: 16 DRSSAYPDRALDRHLSASSLNCLDKALTTEIVYGIIRRQRTLDALLDRL--GKKTAAQQP 73
Query: 148 PLLLQILRIGFYEIVKL-DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNS 206
P L +IL IG Y++ L +PP A V+ V L K++ +VNG+LR+ + L N
Sbjct: 74 PDLRRILHIGLYQLRYLSQIPPSAAVNTAVELTKISHLGKLAAVVNGMLRQYLRLTANGD 133
Query: 207 LPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSR 266
PL E A L ++S P W+V+ W E +L W N P +R N
Sbjct: 134 DPLILPENT----ASRLGILHSFPDWLVQLWLDRFSVTETEQLCQWFNRSPDLDIRINPL 189
Query: 267 KGVTRADLVMQLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGL 326
K +R L +L + H L L R+ +GL N+ + + G +QD SA L
Sbjct: 190 K-TSREALENELESANITFNH---LKLPLACRLTSGLGNIERLEGFRAGNYTLQDISAQL 245
Query: 327 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVN 386
V ++DPQPG++I+D CAAPGGKT ++A + +G + A D RLR L K +
Sbjct: 246 VTYLLDPQPGETIIDACAAPGGKTTHIAELMGDRGKILACDQTASRLRQLEANIKRLDLK 305
Query: 387 SVIRTIH-ADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQD 445
++ IH D R + D+VL+DAPCSGLG L KR D+RW + E++ L Q
Sbjct: 306 AI--EIHLGDSRDRPQWCGI-ADRVLIDAPCSGLGTLHKRPDIRWRQTPENLPVLAKRQG 362
Query: 446 ELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSI-DPADGLVPSDFVTKH 504
ELL +A+ VKP G+LVY+TC+++P ENE +E FL HP++ + P S++ T+
Sbjct: 363 ELLASAATWVKPKGILVYATCTLNPLENERVIEQFLAAHPDWKMATPDSNSSFSEYYTET 422
Query: 505 GFFFSDPIKHSLDGAFAARLVR 526
G P +H+ DG F A+LV+
Sbjct: 423 GAIEVLPHRHNQDGFFMAKLVK 444
>gi|284928897|ref|YP_003421419.1| ribosomal RNA small subunit methyltransferase RsmB [cyanobacterium
UCYN-A]
gi|284809356|gb|ADB95061.1| ribosomal RNA small subunit methyltransferase RsmB [cyanobacterium
UCYN-A]
Length = 453
Score = 231 bits (589), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 150/426 (35%), Positives = 234/426 (54%), Gaps = 13/426 (3%)
Query: 101 GFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYE 160
F+ +L +D L T++V G IR +R LD LI L K P+L +IL IG Y+
Sbjct: 31 AFKHNELSRQDRGLCTELVYGIIRCQRTLDSLIDQL--GNKKSQKQSPVLRRILHIGLYQ 88
Query: 161 IVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQ 219
++ LD +P A V+ +V LAK +VN ILR+ + +K + L + D
Sbjct: 89 LLYLDHVPLSAAVNTSVDLAKNNNLNVLSKVVNAILREYIRVKKKENCKL--ILSKDFVN 146
Query: 220 ARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLN 279
A+ YS P W+V+ W + G + ++KL W N P+ +R N G T ++ +L
Sbjct: 147 TTAIK--YSFPNWIVKNWYQQWGGDTSVKLCYWFNQSPTIDIRVNVL-GKTTQEIKNELI 203
Query: 280 LLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSI 339
+ + V E HL +R+K ++ +G VQD SA LV ++DP+ G+++
Sbjct: 204 MANVNV--EYLPHLPCSLRLKGQTGDIKNLPGFIKGDWTVQDISAQLVSYLLDPKIGETV 261
Query: 340 VDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF 399
+D CAAPGGKT ++A + +GL+ A D RL + + + ++ S I+ + D R
Sbjct: 262 IDACAAPGGKTTHIAELMRDKGLILACDRISSRLTKIQQNIERLKLRS-IKLVKGDSRYL 320
Query: 400 ADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGG 459
+ D+VL+DAPCSGLG L + D+RW + E +++L I+Q E+LD AS VKP G
Sbjct: 321 QQFNNF-ADRVLVDAPCSGLGTLHRNPDIRWRQTPEKIKQLSIIQQEILDKASKWVKPNG 379
Query: 460 VLVYSTCSIDPEENEERVEAFLLRHPEFSID-PADGLVPSDFVTKHGFFFSDPIKHSLDG 518
VLVYSTC+++ ENE V FL +PE++I+ P + S F+T G+ + P +H++DG
Sbjct: 380 VLVYSTCTLNVSENETIVCNFLKNNPEWNIEKPLFSKLFSPFITSSGWLQTLPHEHNMDG 439
Query: 519 AFAARL 524
F +L
Sbjct: 440 FFMVKL 445
>gi|147678123|ref|YP_001212338.1| tRNA and rRNA cytosine-C5-methylases [Pelotomaculum
thermopropionicum SI]
gi|146274220|dbj|BAF59969.1| tRNA and rRNA cytosine-C5-methylases [Pelotomaculum
thermopropionicum SI]
Length = 456
Score = 231 bits (588), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 147/423 (34%), Positives = 227/423 (53%), Gaps = 25/423 (5%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPY 169
D T++ GT+R LD ++ ++ SS +L ILR+G Y+++ +D +PP
Sbjct: 44 DRAFATELAYGTLRSLNTLDWVLEQFI--KQPLSSQSRTVLNILRLGVYQLMFMDRVPPS 101
Query: 170 AVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSH 229
AV +E LA+ G VNG+LR + + N + P LE + + ++ YSH
Sbjct: 102 AVCNEGAELARKYGHAGTVKFVNGVLRNIS--RRLNEISFPALEDDP---VKHISLRYSH 156
Query: 230 PVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPH-E 288
PVWMV+RW K G + + L NN ++R N+ K +TR L +L L V E
Sbjct: 157 PVWMVKRWLKEFGLDHTVALCRANNGPAPNTVRTNTLK-ITRDGLAERLRNEGLTVSETE 215
Query: 289 LS---LHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAA 345
+ L +D F + + LQ+ KEGL +QDES+ L + P PG ++D C+A
Sbjct: 216 FAPEGLKIDGFFSIGS-LQS------FKEGLFQIQDESSMLAGRALMPAPGAFVIDACSA 268
Query: 346 PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTV 405
PGGKT ++A + +G + A+DI+ +L ++ E +N ++ + D R +N
Sbjct: 269 PGGKTTHLAQLMENRGRILAVDIHPHKLVLIKENCSRLGIN-IVEGLAGDARELPENLYN 327
Query: 406 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465
K D +L+DAPCSGLGVL +R D RW + + + LQ E+L+ + +K GV+VYST
Sbjct: 328 KADFILVDAPCSGLGVLRRRPDARWRKEPGQLPAIIQLQREILEGVARCLKKNGVIVYST 387
Query: 466 CSIDPEENEERVEAFLLRHPEFSIDPADGLVPS--DF--VTKHGFFFSDPIKHSLDGAFA 521
C+I EEN +VE FL +HP+F ++ +P+ DF K GF P +H +DG F
Sbjct: 388 CTITREENLRQVEWFLDKHPQFVLEDLSPFLPAGLDFEGTLKGGFLQVLPYRHGMDGFFI 447
Query: 522 ARL 524
AR+
Sbjct: 448 ARM 450
>gi|422304597|ref|ZP_16391940.1| Ribosomal RNA small subunit methyltransferase B [Microcystis
aeruginosa PCC 9806]
gi|389790263|emb|CCI13866.1| Ribosomal RNA small subunit methyltransferase B [Microcystis
aeruginosa PCC 9806]
Length = 446
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 158/442 (35%), Positives = 230/442 (52%), Gaps = 18/442 (4%)
Query: 90 DNEMGYVERTLG--FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSME 147
D Y +R L L+ D L T+IV G +R +R LD L+ L +KT +
Sbjct: 16 DRSSAYPDRALDRHLSASSLNCLDKALTTEIVYGIMRRQRTLDALLDRL--GKKTAAQQP 73
Query: 148 PLLLQILRIGFYEIVKL-DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNS 206
P L +IL IG Y++ L +PP A V+ V L K++ +VNG+LR+ + L N
Sbjct: 74 PDLRRILHIGLYQLRYLSQIPPSAAVNTAVELTKISHLGKLAAVVNGMLRQYLRLTANGD 133
Query: 207 LPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSR 266
PL E A L ++S P W+V+ W E +L W N P +R N
Sbjct: 134 DPLILPENT----ASRLGILHSFPDWLVQLWLDRFSVTETEQLCQWFNRSPDLDIRINPL 189
Query: 267 KGVTRADLVMQLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGL 326
K +R L +L + H L L R+ +GL N+ + + G +QD SA L
Sbjct: 190 K-TSREALENELESANITFNH---LKLPLACRLTSGLGNIERLEGFRAGNYTLQDISAQL 245
Query: 327 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVN 386
V ++DPQPG++I+D CAAPGGKT ++A + +G + A D RLR L K +
Sbjct: 246 VTYLLDPQPGETIIDACAAPGGKTTHIAELMGDRGRILACDQTASRLRQLEANIKRLDLK 305
Query: 387 SVIRTIH-ADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQD 445
++ IH D R + D+VL+DAPCSGLG L KR D+RW + E++ L Q
Sbjct: 306 AI--EIHLGDSRDRPQWHGI-ADRVLIDAPCSGLGTLHKRPDIRWRQTPENLPVLAKRQG 362
Query: 446 ELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSI-DPADGLVPSDFVTKH 504
ELL +A+ VKP G+LVY+TC+++P ENE +E FL HP++ + P S++ T+
Sbjct: 363 ELLASAATWVKPKGILVYATCTLNPLENERVIEQFLAAHPDWKMATPDSNSSFSEYYTET 422
Query: 505 GFFFSDPIKHSLDGAFAARLVR 526
G P +H+ DG F A+LV+
Sbjct: 423 GAIEVLPHRHNQDGFFMAKLVK 444
>gi|328952872|ref|YP_004370206.1| sun protein [Desulfobacca acetoxidans DSM 11109]
gi|328453196|gb|AEB09025.1| sun protein [Desulfobacca acetoxidans DSM 11109]
Length = 456
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 150/450 (33%), Positives = 233/450 (51%), Gaps = 16/450 (3%)
Query: 82 NKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEK 141
N G G +E+TL + L D L+ ++V G +RWR LD+ I + H +
Sbjct: 16 NVPGGAPGPFLDALIEQTLSDHPR-LSHPDRALLRELVTGVLRWRGRLDYAIGQVSH--Q 72
Query: 142 TFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVA-LRPGAGNLVNGILRKLV 199
+ + PL+L +LR+ Y+++ LD +P A V+E+V+LAK+ L P VN RKL
Sbjct: 73 PVNKLHPLVLNLLRLTTYQLLFLDRIPASAAVNESVKLAKIHRLPPALIGFVNAAARKLA 132
Query: 200 LLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSF 259
+ LP P++E ALA SHP W+ RW + LG E A K NN P
Sbjct: 133 TALPDLPLPDPEIE-----PVTALAVATSHPEWLAARWLERLGPEAAWKRAQANNLHPPL 187
Query: 260 SLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAV 319
S+R N+ + +Q+ L + E + + + Q+ + GL
Sbjct: 188 SIRVNT---ALISPATLQVVLQTEGIATESGRFSPVGLTICSLKQSPFNLPSYQRGLWLF 244
Query: 320 QDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNET 379
QDE+A L ++ PQPG I++ A GGKT ++A L G+G + A+D + R+ LN +
Sbjct: 245 QDEAAQLATLLLQPQPGHGILEIGAGRGGKTTHLAQLLRGKGRILAVDHSLERMAALNRS 304
Query: 380 AKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEE 439
+ + V + + + D++L+DAPCSGLGVL + +LRW R+ D++
Sbjct: 305 RQRLGLTGVDLLLTDATLSLPIQPEHRFDRILIDAPCSGLGVLRRHPELRWRRQPGDLDR 364
Query: 440 LKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDP---ADGLV 496
LQ LL A+ ++PGG+L+Y TC+ +PEENE + AFL HP+F++ P +D
Sbjct: 365 FARLQAALLRQAAPYMRPGGLLLYITCTTEPEENESVMAAFLRSHPDFALHPGPVSDAPE 424
Query: 497 PSDFVTKHGFFFSDPIKHSLDGAFAARLVR 526
+ F+ G+F + P +H LDG FAA L +
Sbjct: 425 ITPFIDADGYFRTLPERHDLDGFFAALLAK 454
>gi|425454955|ref|ZP_18834680.1| Ribosomal RNA small subunit methyltransferase B [Microcystis
aeruginosa PCC 9807]
gi|389804235|emb|CCI16917.1| Ribosomal RNA small subunit methyltransferase B [Microcystis
aeruginosa PCC 9807]
Length = 446
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 158/442 (35%), Positives = 230/442 (52%), Gaps = 18/442 (4%)
Query: 90 DNEMGYVERTLG--FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSME 147
D Y +R L L+ D L T+IV G +R +R LD L+ L +KT +
Sbjct: 16 DRSSAYPDRALDRHLSASSLNCLDKALTTEIVYGIMRRQRTLDALLDRL--GKKTAAQQP 73
Query: 148 PLLLQILRIGFYEIVKL-DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNS 206
P L +IL IG Y++ L +PP A V+ V L K++ +VNG+LR+ + L N
Sbjct: 74 PDLRRILHIGLYQLRYLSQIPPSAAVNTAVELTKISHLGKLAAVVNGMLRQYLRLTANGD 133
Query: 207 LPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSR 266
PL E A L ++S P W+V+ W E +L W N P +R N
Sbjct: 134 DPLILPENT----ASRLGILHSFPDWLVQLWLDRFSVTETEQLCQWFNRSPDLDIRINPL 189
Query: 267 KGVTRADLVMQLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGL 326
K +R L +L + H L L R+ +GL N+ + + G +QD SA L
Sbjct: 190 K-TSREALENELESANITFNH---LKLPLACRLTSGLGNIERLEGFRAGNYTLQDISAQL 245
Query: 327 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVN 386
V ++DPQPG++I+D CAAPGGKT ++A + +G + A D RLR L K +
Sbjct: 246 VTYLLDPQPGETIIDACAAPGGKTTHIAELMGDRGRILACDQTASRLRQLEANIKRLDLK 305
Query: 387 SVIRTIH-ADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQD 445
++ IH D R + D+VL+DAPCSGLG L K D+RW + E++ L Q
Sbjct: 306 AI--EIHLGDSRDRPQWCGI-ADRVLIDAPCSGLGTLHKLPDIRWRQTPENLPVLAKRQG 362
Query: 446 ELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVP-SDFVTKH 504
ELL +A+ VKP G+LVY+TC+++P ENE +E FL HP++ + P D S++ T+
Sbjct: 363 ELLASAATWVKPKGILVYATCTLNPLENERVIEQFLAAHPDWKMAPPDSNSSFSEYYTET 422
Query: 505 GFFFSDPIKHSLDGAFAARLVR 526
G P +H+ DG F A+LV+
Sbjct: 423 GAIEVLPHRHNQDGFFMAKLVK 444
>gi|421873665|ref|ZP_16305277.1| ribosomal RNA small subunit methyltransferase B [Brevibacillus
laterosporus GI-9]
gi|372457452|emb|CCF14826.1| ribosomal RNA small subunit methyltransferase B [Brevibacillus
laterosporus GI-9]
Length = 436
Score = 230 bits (586), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 148/428 (34%), Positives = 234/428 (54%), Gaps = 25/428 (5%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L D+ LVT++V GTI+ R LD +I + ++ +LQ+LR+ Y++ LD
Sbjct: 23 LSKADVGLVTELVYGTIQRRMTLDEVIGQFV--KGGTKKLQGWVLQLLRMSLYQVRFLDR 80
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A V E V +AK G +LVNG+LR +L + + LPK + +A
Sbjct: 81 VPDRAAVHEAVEIAKKRGHKGISSLVNGVLRN-ILRQPESWEKLPK------GITKQIAV 133
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
SHP W+V+RW K G+E + NN P S+R N + T AD ++Q +K
Sbjct: 134 TESHPEWLVKRWVKQYGEETTRAICHSNNQSPMPSIRVNRLR--TTADALLQE--MKEAF 189
Query: 286 PHELSLHLD-EFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 344
P L + + +++G + + +EG C +QDES+ LV + P ++D CA
Sbjct: 190 PEAAKSELTPDALLLQSG--HAAGSSWFQEGFCTIQDESSMLVAPALHLTPNLRVLDACA 247
Query: 345 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNST 404
APGGKT ++A + QG + A D++ + ++ + AK + ++I T+ AD D +
Sbjct: 248 APGGKTTHIAELMGNQGEILACDVHPHKRELIEQNAKRLGI-TIITTMVADAADLLDRNV 306
Query: 405 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464
+ D++LLDAPCSG GV+ ++ DL+WN+ ED++ + +Q +LL+ + L+KP G LVYS
Sbjct: 307 GEFDRILLDAPCSGFGVIRRKPDLKWNKTAEDIKAISEIQYDLLERVAPLLKPDGYLVYS 366
Query: 465 TCSIDPEENEERVEAFLLRHPEFSIDP--ADGLVPSDFVTK----HGFFFSDPIKHSLDG 518
TC+ID +EN++ VE F+ HPE+ +D A+ L P+ K G+ P S DG
Sbjct: 367 TCTIDSQENQDVVERFIAEHPEYELDKSLAEDL-PTGLTEKIDASKGYVQILPHHFSSDG 425
Query: 519 AFAARLVR 526
F AR+ R
Sbjct: 426 FFIARIKR 433
>gi|411120538|ref|ZP_11392910.1| ribosomal RNA small subunit methyltransferase RsmB [Oscillatoriales
cyanobacterium JSC-12]
gi|410709207|gb|EKQ66722.1| ribosomal RNA small subunit methyltransferase RsmB [Oscillatoriales
cyanobacterium JSC-12]
Length = 451
Score = 230 bits (586), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 169/471 (35%), Positives = 247/471 (52%), Gaps = 40/471 (8%)
Query: 62 AVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGG 121
A+SA+R ++ GAFAD++ DN + V L+ D RL+T++V G
Sbjct: 9 ALSALREIQ---RGAFADVVL-------DNLLQQVR---------LNSPDKRLLTELVYG 49
Query: 122 TIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL-DMPPYAVVDENVRLAK 180
IR +R LD LI L +K P L +IL +G Y++ L +P A V+ V LAK
Sbjct: 50 IIRQQRTLDALIDQL--GKKRSHQQPPDLRRILHLGLYQLRYLTHIPVSAAVNTTVELAK 107
Query: 181 VALRPGAGNLVNGILRKLVLLKDN--NSLPLPKLEGNDRAQARALATIYSHPVWMVRRWT 238
+ G +VNG+LR+ L + + L LP + L +YS+P W+V W
Sbjct: 108 KSGFAGLSGVVNGLLRQYDRLAASAIDPLILPS------HPTQHLGILYSYPDWIVDIWL 161
Query: 239 KYLGQEEAIKLMVWNNSDPSFSLRANSRKG-VTRADLVMQLNLLKL-QVPHELSLHLDEF 296
+ G E +L W N PS LR N K V + MQ +K+ +VP L
Sbjct: 162 QQFGWSETEQLCRWLNQPPSIDLRVNRLKTTVENVEAAMQTAGVKVVRVPP-----LPYA 216
Query: 297 IRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASC 356
+R+ + + ++G VQD SA LV ++DPQPG+ ++D CAAPGGKT ++A
Sbjct: 217 LRLVEHVGRIQDLPGFQDGWWVVQDCSAQLVSYLLDPQPGEVVIDACAAPGGKTTHIAEL 276
Query: 357 LSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPC 416
++ QG V+A D RL+ L + Q+ S IR H D R + D+VLLDAPC
Sbjct: 277 MNDQGTVWACDKTSSRLKKLEQNCDRLQLQS-IRIHHGDSRVLPRFNQ-PADRVLLDAPC 334
Query: 417 SGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEER 476
SGLG L + AD RW + + + +L LQ LL+ A+ +K GVLVY+TC++ P ENE+
Sbjct: 335 SGLGTLHRHADARWRQTPDTVNQLVSLQCALLEQAASWIKANGVLVYATCTLHPAENEQI 394
Query: 477 VEAFLLRHPEFS-IDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARLVR 526
++ FL HP++ + P+ + S F T G+ P H++DG F ARL R
Sbjct: 395 IQQFLETHPDWQLVVPSASSLVSKFATGDGWIKILPHHHAMDGFFMARLER 445
>gi|425460298|ref|ZP_18839779.1| Ribosomal RNA small subunit methyltransferase B [Microcystis
aeruginosa PCC 9808]
gi|389827038|emb|CCI22011.1| Ribosomal RNA small subunit methyltransferase B [Microcystis
aeruginosa PCC 9808]
Length = 446
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 158/442 (35%), Positives = 229/442 (51%), Gaps = 18/442 (4%)
Query: 90 DNEMGYVERTLG--FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSME 147
D Y +R L L+ D L T+IV G +R +R LD L+ L +KT +
Sbjct: 16 DRSSAYPDRALDRHLSASSLNCLDKALTTEIVYGIMRRQRTLDALLDRL--GKKTAAQQP 73
Query: 148 PLLLQILRIGFYEIVKL-DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNS 206
P L +IL IG Y++ L +PP A V+ V L K++ +VNG+LR+ + L N
Sbjct: 74 PDLRRILHIGLYQLRYLSQIPPSAAVNTAVELTKISHLGKLAAVVNGMLRQYLRLTANGD 133
Query: 207 LPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSR 266
PL E A L ++S P W+V+ W E +L W N P +R N
Sbjct: 134 DPLLLPENT----ASRLGILHSFPDWLVQLWLDRFSVTETEQLCQWFNRSPDLDIRINPL 189
Query: 267 KGVTRADLVMQLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGL 326
K +R L L + H L L R+ +GL N+ + + G +QD SA L
Sbjct: 190 K-TSREALENDLESANITFHH---LKLPLACRLTSGLGNIERLEGFRAGNYTLQDISAQL 245
Query: 327 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVN 386
V ++DPQPG++I+D CAAPGGKT ++A + +G + A D RLR L K +
Sbjct: 246 VTYLLDPQPGETIIDACAAPGGKTTHIAELMGDRGRILACDQTPSRLRQLEANIKRLDLK 305
Query: 387 SVIRTIH-ADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQD 445
++ IH D R + D+VL+DAPCSGLG L KR D+RW + E++ L Q
Sbjct: 306 AI--EIHLGDSRDRPQWCGI-ADRVLIDAPCSGLGTLHKRPDIRWRQTPENLPVLAKRQG 362
Query: 446 ELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSI-DPADGLVPSDFVTKH 504
ELL +A+ VKP G+LVY+TC+++P ENE +E FL HP++ + P S++ T+
Sbjct: 363 ELLASAATWVKPKGILVYATCTLNPLENERVIEQFLAAHPDWKMATPDSNSCVSEYYTET 422
Query: 505 GFFFSDPIKHSLDGAFAARLVR 526
G P +H+ DG F A+LV+
Sbjct: 423 GAIEVLPHRHNQDGFFMAKLVK 444
>gi|335049751|ref|ZP_08542737.1| ribosomal RNA small subunit methyltransferase B [Megasphaera sp.
UPII 199-6]
gi|333762246|gb|EGL39750.1| ribosomal RNA small subunit methyltransferase B [Megasphaera sp.
UPII 199-6]
Length = 442
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 148/424 (34%), Positives = 223/424 (52%), Gaps = 21/424 (4%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L DRD R T++V GT+R+ LD I +L +++ M+ + ILR+G Y++ LD
Sbjct: 34 LSDRDRRFYTELVYGTLRYMAMLDRAIGML--SKRSLQQMDAVCAAILRLGLYQLQYLDK 91
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKL---EGNDRAQARA 222
+PP A E V LA+ G VN +LR N+L P++ +
Sbjct: 92 VPPSAACYEAVALARKMGHEGMAKFVNAVLR--------NALRRPEVFVVPSRQEDEVLH 143
Query: 223 LATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLK 282
LA Y W +RR + G EE +KL + ++ P +R ++K + M
Sbjct: 144 LALTYHQQNWFIRRCLQQYGFEETVKLCRFFDTIPELCVRIQTQKISREKAMAMLAEKGI 203
Query: 283 LQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 342
+ P + +I +QN+ LL G +QDE++ LV V+DPQPG ++D
Sbjct: 204 VTRPGRYAPE-SLYIETNDAVQNL---ELLAAGRAMIQDEASQLVAHVLDPQPGDVVLDV 259
Query: 343 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN 402
CAAPGGKT ++AS LVY DI + +L+++ E AK Q+++ IRTI D +
Sbjct: 260 CAAPGGKTTHIASLGGPDCLVYGADIYEHKLQLIRENAKKLQLSN-IRTILQDAVRIGER 318
Query: 403 STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLV 462
K D+VL+DAPCSGLG+L ++ DLRW ++ +D+ L LQ +L+ A+ VK GG+LV
Sbjct: 319 FPAKADRVLVDAPCSGLGILRRKLDLRWRKKEQDLMRLPSLQTRILNGAAACVKTGGILV 378
Query: 463 YSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAA 522
YSTC+I+ EN VEAFL RH EF++ A + + P + +DG F A
Sbjct: 379 YSTCTINTAENAAVVEAFLQRHTEFTLLRAGE--TCSWPQPGKYIDVLPQRDGIDGFFIA 436
Query: 523 RLVR 526
++ R
Sbjct: 437 KMRR 440
>gi|186684748|ref|YP_001867944.1| sun protein [Nostoc punctiforme PCC 73102]
gi|186467200|gb|ACC83001.1| sun protein [Nostoc punctiforme PCC 73102]
Length = 487
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 157/462 (33%), Positives = 231/462 (50%), Gaps = 57/462 (12%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPL-LLQILRIGFYEI-VK 163
+L DRD RLVT++V G++R +R LD LI K S +P L IL +GFY++ +
Sbjct: 33 NLPDRDRRLVTELVYGSVRRQRTLDTLIDQFA---KNKSHQQPQDLRTILHLGFYQLRYQ 89
Query: 164 LDMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLV-----------------LLKDNNS 206
+P A V+ V+LAK G VNG+LR+ + ++ +S
Sbjct: 90 ERIPASAAVNTTVQLAKENGFSGLTGFVNGLLRQYLRKAGEQGGRGAGGQRSRGAEEKDS 149
Query: 207 L--------------------PLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEA 246
L PL +L N L ++S P W+++ W + LG E
Sbjct: 150 LLVPVPQPPVPSTQAPVLNFDPL-QLPENP---VERLGILHSFPDWIIQVWLEQLGLTET 205
Query: 247 IKLMVWNNSDPSFSLRANSR-KGVTRADLVMQ-LNLLKLQVPHELSLHLDEFIRVKTGLQ 304
+L W N P+ LR N + + +Q + LL ++P L + +R
Sbjct: 206 EQLCEWMNQSPTIDLRINPLCTSIEEVEAALQSVGLLVRRIPD-----LPQALRFMGNTG 260
Query: 305 NVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVY 364
++ + KEG VQD SA LV ++DPQPG+ ++D CAAPGGKT ++A ++ G ++
Sbjct: 261 SIQKLPGFKEGWWTVQDASAQLVSHLLDPQPGEVVIDVCAAPGGKTTHIAELMADSGKIW 320
Query: 365 AIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSK 424
A D RLR L E ++ + S+ I+ ++ D+VLLDAPCSGLG + +
Sbjct: 321 ACDRTASRLRKLQENSQRLNLQSI--QIYTGDSRHSNQFQNTADRVLLDAPCSGLGTMHR 378
Query: 425 RADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRH 484
AD RW + E + EL +LQ ELL S VK GGVLVY+TC++ P ENEE + AFL
Sbjct: 379 HADARWRQTPESVRELSVLQKELLTHTSTFVKAGGVLVYATCTLHPAENEEVISAFLAES 438
Query: 485 PEFSIDPADG--LVPSDFVTKHGFFFSDPIKHSLDGAFAARL 524
P + I+P G L S + T G+F P + +DG RL
Sbjct: 439 PHWQIEPPRGIELAASAYSTPQGWFKVWPHRQDMDGFLMVRL 480
>gi|392960506|ref|ZP_10325974.1| sun protein [Pelosinus fermentans DSM 17108]
gi|421054737|ref|ZP_15517702.1| sun protein [Pelosinus fermentans B4]
gi|421060987|ref|ZP_15523382.1| sun protein [Pelosinus fermentans B3]
gi|421063840|ref|ZP_15525780.1| sun protein [Pelosinus fermentans A12]
gi|421071600|ref|ZP_15532716.1| sun protein [Pelosinus fermentans A11]
gi|392440418|gb|EIW18098.1| sun protein [Pelosinus fermentans B4]
gi|392446865|gb|EIW24136.1| sun protein [Pelosinus fermentans A11]
gi|392452585|gb|EIW29509.1| sun protein [Pelosinus fermentans B3]
gi|392455083|gb|EIW31890.1| sun protein [Pelosinus fermentans DSM 17108]
gi|392462206|gb|EIW38313.1| sun protein [Pelosinus fermentans A12]
Length = 443
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 159/422 (37%), Positives = 226/422 (53%), Gaps = 16/422 (3%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+ D+D R +T++V GTI+ LD +I ++ + + P++L ILRIG Y+I L
Sbjct: 34 ISDQDRRFITELVYGTIKAGETLDWIIGHYV--TRSLNKVAPVILNILRIGMYQIFFLSK 91
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A ++ V L K G VN +LR + + P E N + LA
Sbjct: 92 VPVSAACNQAVELTKKYGHAGTVKFVNAVLRNAG--RGPEKVIYPDREKN---IVQFLAL 146
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
Y HP WMV RW K LG + A +L NN P SLR N+ K TR + L V
Sbjct: 147 KYFHPQWMVARWAKRLGADAAEELCQINNVTPGLSLRTNTLKN-TRE--ELLEILNLEGV 203
Query: 286 PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAA 345
E S E I V + L++GL +QDES+ LV V+ P+PG+ I+D C A
Sbjct: 204 SAEASAWTPEGI-VCHSYPALSTLKSLRDGLFQIQDESSMLVAHVLAPKPGEFIIDACGA 262
Query: 346 PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTV 405
PGGK+ ++A+ + +G V + DI +L + E A+ + ++I D T DN
Sbjct: 263 PGGKSTHIATLMGNKGRVLSTDIYDHKLALTQENAQRLGL-TIIDVQSLDATTLGDNYAR 321
Query: 406 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDM-EELKILQDELLDAASLLVKPGGVLVYS 464
+ DKVL+DAPCSGLGVL ++AD RW R+ EDM +EL ILQ +L +A+ VK GG LVYS
Sbjct: 322 QADKVLVDAPCSGLGVLRRKADSRW-RKTEDMFKELPILQMAILKSAAQCVKLGGTLVYS 380
Query: 465 TCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARL 524
TC+ +PEEN++ V FL +P+F++ A + P I H +DG F +RL
Sbjct: 381 TCTTEPEENQDVVNNFLQENPDFALQHAGEMFPVTENKAEMVQLWPHIDH-VDGFFISRL 439
Query: 525 VR 526
VR
Sbjct: 440 VR 441
>gi|429737562|ref|ZP_19271420.1| ribosomal RNA small subunit methyltransferase B [Selenomonas sp.
oral taxon 138 str. F0429]
gi|429152368|gb|EKX95198.1| ribosomal RNA small subunit methyltransferase B [Selenomonas sp.
oral taxon 138 str. F0429]
Length = 448
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 149/432 (34%), Positives = 223/432 (51%), Gaps = 29/432 (6%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
R L +RD R +T++V G + LD++I D ++P + ++LR+GFY+I
Sbjct: 38 LRDTVLAERDRRFLTELVYGVTKAGESLDYMIGQYVAD---IRKVQPAIRELLRLGFYQI 94
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
+D +PP A + V LAK R GA + VNG+LR + + LP G D A
Sbjct: 95 FVMDRVPPSAACNTAVELAKKHGRRGADSFVNGVLRAALRAPERAVLPT----GRD---A 147
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
RALA HP WMV RW + G E L + NN+ S+R N+ + R+ L+ Q +
Sbjct: 148 RALALRSWHPAWMVERWMRAYGYERTEALCLCNNTSAPLSVRVNTLR-TNRSALMEQFAV 206
Query: 281 LKLQ------VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQ 334
+ VP + LH L ++ L+ GL VQDES+ LV V+ +
Sbjct: 207 AGAEARASRWVPDGIVLH------AHGALDDLPP---LRAGLAQVQDESSMLVAHVLGAE 257
Query: 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHA 394
PG +++D CAAPGGKT ++A + +G + A DI + ++R + + A+ + S+I
Sbjct: 258 PGMTVIDTCAAPGGKTTHIAQRMENRGRILAFDIYEEKIRRIEQNARRLGI-SIIEAEMR 316
Query: 395 DLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLL 454
D R D+VL+DAPCSGLGVL +++D RW + D + L +Q +L +A+
Sbjct: 317 DAREIGAAYEAMADRVLVDAPCSGLGVLRRKSDARWKKSASDRKTLPPIQRAILASAARA 376
Query: 455 VKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKH 514
VK GGVLVYSTC+++ EN V+ FL HP F+++ +P T P
Sbjct: 377 VKSGGVLVYSTCTMEECENAAVVQDFLRAHPHFTLEQTGAFLPEQ-KTAEPMVQIMPETD 435
Query: 515 SLDGAFAARLVR 526
DG F AR+ R
Sbjct: 436 GPDGFFIARMRR 447
>gi|340355046|ref|ZP_08677739.1| RNA methyltransferase Sun [Sporosarcina newyorkensis 2681]
gi|339622727|gb|EGQ27241.1| RNA methyltransferase Sun [Sporosarcina newyorkensis 2681]
Length = 446
Score = 229 bits (583), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 150/425 (35%), Positives = 238/425 (56%), Gaps = 31/425 (7%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD 165
DL +D L+T++ GT++ + LD+ + + ++P + Q+LR+ Y+I+ L
Sbjct: 43 DLPQKDRALLTELTYGTLQQQMTLDYYL-----EPYIRGKLQPWVRQLLRMSVYQIIYLS 97
Query: 166 -MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+PP+AVV+E V++A G ++VNGILR + L++ +P L+ D R L+
Sbjct: 98 KIPPHAVVNEAVKIANKRGHKGVSSMVNGILRSI--LREG----VPSLDEIDDPVVR-LS 150
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLK-- 282
SHP W++RRW + G EEA + V NN P + R NS K R +++ LLK
Sbjct: 151 IETSHPEWLIRRWIEQYGMEEATAIAVVNNLPPVTTARINSTK-TNRGEVI---GLLKKE 206
Query: 283 --LQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIV 340
L P L+ D I+V++G N+ ++GL VQDES+ L + +PG ++
Sbjct: 207 GVLASPGNLT---DSSIQVESG--NLASTEAFQQGLLTVQDESSMLPALALQVEPGMKVL 261
Query: 341 DCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 400
D CAAPGGKT ++A + +G V A D++ +LR++ + A+ + S I T D R
Sbjct: 262 DMCAAPGGKTTHIAERMKDEGEVQAHDLHPHKLRLIEQNAERLGLTS-IHTNSGDSRELL 320
Query: 401 DNSTVKC-DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGG 459
+ D+VL+DAPCSGLGV+ ++ ++++ + ++D+E L ++Q +LL A+ LVK GG
Sbjct: 321 STYEPQSFDRVLVDAPCSGLGVIRRKPEIKYKKTVQDIENLSVIQKDLLQVAAQLVKKGG 380
Query: 460 VLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGA 519
LVYSTC+ID EN+ VE FL P+F + P L +D T + P ++ DG
Sbjct: 381 RLVYSTCTIDKTENQAIVEWFLREQPDFELVP---LHITDQPTDSSYLQILPHQYESDGF 437
Query: 520 FAARL 524
F A L
Sbjct: 438 FVAAL 442
>gi|414152954|ref|ZP_11409281.1| Sun protein [Desulfotomaculum hydrothermale Lam5 = DSM 18033]
gi|411455336|emb|CCO07183.1| Sun protein [Desulfotomaculum hydrothermale Lam5 = DSM 18033]
Length = 453
Score = 229 bits (583), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 152/420 (36%), Positives = 223/420 (53%), Gaps = 19/420 (4%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHD-EKTFSSMEPLLLQILRIGFYEIVKLD-MPP 168
D T++V G +R +L+ + +L H ++ +S + ILR+G Y+I+ + +P
Sbjct: 41 DRAFATELVYGVLR---HLNTIDWILAHFLKQPLASQTVWIRNILRMGTYQIMFMPRIPD 97
Query: 169 YAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYS 228
A +E+V LAK GA N VNG+LR +V +DN P P+ + D +A YS
Sbjct: 98 SAACNESVNLAKKYGHAGAANFVNGVLRNVVRQRDNLDFPDPEQDPVD-----FIALKYS 152
Query: 229 HPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHE 288
HP W+V RW K G I L NNS ++R N+ K ++R +L Q L V
Sbjct: 153 HPTWLVERWLKEFGFSATIALCQANNSPAPNTVRTNTLK-ISRQEL--QARLQDEGVKAT 209
Query: 289 LSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGG 348
++ + E + + +G + +EGL VQDES+ LV V++P G ++D AAPGG
Sbjct: 210 VTAYAPEGLNL-SGFLSYRSLTTFREGLFQVQDESSMLVAHVLNPASGARVIDVAAAPGG 268
Query: 349 KTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCD 408
KT ++A + G + A D+ +L ++N+ + +NS I+T AD R D
Sbjct: 269 KTTHLAQLMGDSGQILAFDLYAHKLDLINDNCRRLGINS-IQTKVADARDIHQEYQGWAD 327
Query: 409 KVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSI 468
VL+DAPCSGLGVL +R D RW + + + LQ E+L +AS ++PGGVLVYSTC+I
Sbjct: 328 YVLVDAPCSGLGVLRRRPDARWRKDPCQLPGIVKLQKEILTSASKCLRPGGVLVYSTCTI 387
Query: 469 DPEENEERVEAFLLRHPEFSIDPADGLVPS----DFVTKHGFFFSDPIKHSLDGAFAARL 524
EEN VE FL HPEFS+ +P + G+ P H +DG F ARL
Sbjct: 388 SHEENLGVVEDFLANHPEFSLGDLRQFLPPGLDREATAARGYLQLLPHVHGMDGFFLARL 447
>gi|337285416|ref|YP_004624889.1| sun protein [Thermodesulfatator indicus DSM 15286]
gi|335358244|gb|AEH43925.1| sun protein [Thermodesulfatator indicus DSM 15286]
Length = 456
Score = 228 bits (582), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 153/422 (36%), Positives = 230/422 (54%), Gaps = 17/422 (4%)
Query: 108 DDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMP 167
D RD V++++ G +R YLD+++ + K M+P + LR+G Y+I +P
Sbjct: 42 DPRDRAFVSELINGVVRHLVYLDYVLSRVSR--KPLDKMDPEVRNALRLGAYQIFFTRVP 99
Query: 168 PYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIY 227
V E ++L K N VN +LR+L KD SLP +++ + LA Y
Sbjct: 100 VQVAVAETIKLVKPRRGQWIVNFVNAVLRELARRKDEISLPPKEMDPVEH-----LAIKY 154
Query: 228 SHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPH 287
S+P W+V RW K G+EE L+ N P+ +RAN+ + VTR +L++ LK VP
Sbjct: 155 SYPRWLVERWLKRFGEEETEALLKAGNERPTLVIRANTLR-VTRDNLLL---FLKKDVPE 210
Query: 288 ELSLHLD-EFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAP 346
+ I +K V K G VQDE++ LV ++ P+ G+ I+D CA
Sbjct: 211 ASPCRFSPDGIELKGFRGQVTSLKAFKFGWLQVQDEASQLVSYLLSPKEGERILDACAGV 270
Query: 347 GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVK 406
GGKT ++A + G +YA+D+ RL+ L E AK + + I I D + K
Sbjct: 271 GGKTTHLAQLMRNTGKIYAMDVLAWRLKRLEENAKRLGITN-IEVITGDATKSIEKLGGK 329
Query: 407 C-DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465
D++L+DAPC+G GV+ + D++W R+ ED+ + Q LL++ + LVK GV+VY+T
Sbjct: 330 FFDRILIDAPCTGTGVIRRHPDIKWARKPEDLVTVPEKQLSLLNSLAPLVKEKGVIVYAT 389
Query: 466 CSIDPEENEERVEAFLLRHPEFSIDPADGLVP---SDFVTKHGFFFSDPIKHSLDGAFAA 522
CS++PEENEE +E FL +HPEF I+ A +P + V K GF + P +H LDG FAA
Sbjct: 390 CSLEPEENEEVIEKFLKKHPEFQIEDARKYLPEKAQELVDKRGFMHTYPHRHGLDGFFAA 449
Query: 523 RL 524
RL
Sbjct: 450 RL 451
>gi|15615070|ref|NP_243373.1| hypothetical protein BH2507 [Bacillus halodurans C-125]
gi|10175127|dbj|BAB06226.1| BH2507 [Bacillus halodurans C-125]
Length = 450
Score = 228 bits (581), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 142/435 (32%), Positives = 241/435 (55%), Gaps = 39/435 (8%)
Query: 61 RAVSAVRLMRIQFGGAFADLL-NKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIV 119
R V+ L++I+ A+++LL N+K + +L+ RD+ L+T++V
Sbjct: 7 REVALETLVQIEKSQAYSNLLLNQK-----------------IKQANLEPRDIGLLTELV 49
Query: 120 GGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRL 178
GT++ ++ LD+ I K +E + +LR+ Y++V LD +PP+A++ E V +
Sbjct: 50 YGTVQRQKTLDYYIASFVAKGK--RKLEDWVRILLRLSVYQLVYLDKVPPHAIIHEAVNI 107
Query: 179 AKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWT 238
AK G LVNG+LR + + P +E + + LA YS+P W+V+RW
Sbjct: 108 AKKRGHKGISGLVNGVLRSM---QRQGMPPFAAIED----KVKRLAVEYSYPEWLVKRWI 160
Query: 239 KYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFIR 298
G+EE + + P + R N RK T + + +L +Q + + D+ I
Sbjct: 161 DQYGEEETVSICEEMLLPPKVTARVNVRKR-TVEEALERLEHEGVQATN--GVLSDDAIV 217
Query: 299 VKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLS 358
V G + L ++G +QDES+ LV V P+PG+ I+D CAAPGGK+ +MA +
Sbjct: 218 VDKG--TITSTRLFQDGELTIQDESSMLVARAVAPRPGERILDACAAPGGKSTHMAERMD 275
Query: 359 GQGLVYAIDINKGRLRILNETAK---LHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAP 415
G+G + ++D+++ +++++ E AK L + + FAD D++L+DAP
Sbjct: 276 GEGTIVSLDMHRHKVKLIEEQAKRLGLDNIKAQTLDARKAREVFADEP---FDRILVDAP 332
Query: 416 CSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEE 475
CSGLGV+ ++ D++W +R DM+ ++ +Q ++L + + LVKPGG+L+YSTC+ID ENE+
Sbjct: 333 CSGLGVIRRKPDIKWTKREADMKAIRNVQLDILSSVAKLVKPGGLLIYSTCTIDQLENEQ 392
Query: 476 RVEAFLLRHPEFSID 490
+ F+ H EFSID
Sbjct: 393 VIAEFMEAHGEFSID 407
>gi|434398098|ref|YP_007132102.1| sun protein [Stanieria cyanosphaera PCC 7437]
gi|428269195|gb|AFZ35136.1| sun protein [Stanieria cyanosphaera PCC 7437]
Length = 453
Score = 228 bits (581), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 165/438 (37%), Positives = 244/438 (55%), Gaps = 33/438 (7%)
Query: 104 TKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVK 163
+ +L + L ++V G +R +R LD LI LL +K P L IL++G Y++
Sbjct: 36 SPELSSVEKSLTCELVYGIVRRQRTLDSLINLL--GKKKAQQQPPNLRIILQMGLYQLRY 93
Query: 164 LD-MPPYAVVDENVRLAKV-ALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQAR 221
LD +P A V+ +V LAK L+ AG +VNG+LR+ L + N PL +L N +
Sbjct: 94 LDHIPVSAAVNTSVELAKQNGLKKLAG-VVNGLLREY-LRQATNCDPL-ELPNNPVTK-- 148
Query: 222 ALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRAN----SRKGVTRADLVMQ 277
+ YS P W+V + + L E +L W N LR N S + V +A +
Sbjct: 149 -IGIKYSFPDWIVETFLQQLPASEVEQLCGWFNQPAQIDLRINLLKTSLETVEKA--FLD 205
Query: 278 LNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQ 337
+ ++VPH L + +R+ + Q + G VQD SA LV ++DPQPG+
Sbjct: 206 QGITTVRVPH-----LSQTLRLTNSAGKINQLPGYEAGWWMVQDSSAQLVTHLLDPQPGE 260
Query: 338 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR 397
+IVD CAAPGGKT ++A + QG++YA D+++ RL + E A+ Q+ S I+ D R
Sbjct: 261 TIVDACAAPGGKTTHIAELIKDQGVIYACDLSEKRLNKVQENAQRLQLKS-IKICPGDSR 319
Query: 398 TFADNSTVKC------DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAA 451
N TV+C D+VLLDAPCSGLG L KR D+RW + L + EL LQ +LL+ A
Sbjct: 320 ----NRTVQCNSKFLVDRVLLDAPCSGLGTLHKRPDIRWRQTLTKIGELSQLQQQLLNQA 375
Query: 452 SLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSD-FVTKHGFFFSD 510
+ VKPGG++VY+TC+++ ENE +E+FL HPE+ I+ + P++ F T G+
Sbjct: 376 ATWVKPGGIIVYATCTLNRLENEVVIESFLQSHPEWQIESSVFDSPANHFATFPGWIKVF 435
Query: 511 PIKHSLDGAFAARLVRAF 528
P KH++DG F +L R F
Sbjct: 436 PHKHNMDGFFMVKLQREF 453
>gi|425440910|ref|ZP_18821202.1| Ribosomal RNA small subunit methyltransferase B [Microcystis
aeruginosa PCC 9717]
gi|389718555|emb|CCH97514.1| Ribosomal RNA small subunit methyltransferase B [Microcystis
aeruginosa PCC 9717]
Length = 450
Score = 228 bits (581), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 158/442 (35%), Positives = 229/442 (51%), Gaps = 18/442 (4%)
Query: 90 DNEMGYVERTLG--FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSME 147
D Y +R L L+ D L T+IV G +R +R LD L+ L +KT +
Sbjct: 16 DRSSAYPDRALDRHLSASSLNCLDKALTTEIVYGIMRRQRTLDALLDRL--GKKTAAQQP 73
Query: 148 PLLLQILRIGFYEIVKL-DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNS 206
P L +IL IG Y++ L +PP A V+ V L K++ +VNG+LR+ + L N
Sbjct: 74 PDLRRILHIGLYQLRYLSQIPPSAAVNTAVELTKISHLGKLAAVVNGMLRQYLRLTANGD 133
Query: 207 LPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSR 266
PL E A L ++S P W+V+ W E +L W N P +R N
Sbjct: 134 DPLLLPENT----ASRLGILHSFPDWLVQLWLDRFSVTETEQLCQWFNRSPDLDIRINPL 189
Query: 267 KGVTRADLVMQLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGL 326
K A L +L + + L L R+ +GL N+ + + G +QD SA L
Sbjct: 190 KTSLEA-LENELESANITFNY---LKLPLACRLTSGLGNIERLEGFRAGNYTLQDISAQL 245
Query: 327 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVN 386
V ++DPQPG++I+D CAAPGGKT ++A + +G + A D RLR L K +
Sbjct: 246 VTYLLDPQPGETIIDACAAPGGKTTHIAELMGDRGRILACDQTASRLRQLEANIKRLDLK 305
Query: 387 SVIRTIH-ADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQD 445
++ IH D R + D+VL+DAPCSGLG L KR D+RW + E++ L Q
Sbjct: 306 AI--EIHLGDSRDRPQWHGI-ADRVLIDAPCSGLGTLHKRPDIRWRQTPENLPVLAKRQG 362
Query: 446 ELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSI-DPADGLVPSDFVTKH 504
ELL +A+ VKP G+LVY+TC++DP ENE +E FL HP++ + P S++ T+
Sbjct: 363 ELLASAATWVKPKGILVYATCTLDPLENERVIEQFLAAHPDWKMATPDSNSCFSEYYTET 422
Query: 505 GFFFSDPIKHSLDGAFAARLVR 526
G P +H+ DG F A+LV+
Sbjct: 423 GAIEVLPHRHNQDGFFMAKLVK 444
>gi|434404680|ref|YP_007147565.1| ribosomal RNA small subunit methyltransferase RsmB [Cylindrospermum
stagnale PCC 7417]
gi|428258935|gb|AFZ24885.1| ribosomal RNA small subunit methyltransferase RsmB [Cylindrospermum
stagnale PCC 7417]
Length = 449
Score = 228 bits (580), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 149/423 (35%), Positives = 217/423 (51%), Gaps = 17/423 (4%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI-VKL 164
+L DRD RLVT++V G++R +R LD LI L K P L IL +G Y++ +
Sbjct: 33 NLADRDRRLVTELVYGSVRRQRTLDALIDQLA--TKKSQQQPPDLRTILHLGLYQLRYQE 90
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P A V+ V LAK G NG+LR+ + L + + PL E L
Sbjct: 91 RIPASAAVNTTVELAKENGFAGLTGFANGVLRQYIRLAEKSPEPLELPEN----PVERLG 146
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANS-RKGVTRADLVMQ-LNLLK 282
++S P W+++ W + LG E KL W N P+ LR N R + + + + +L
Sbjct: 147 ILHSFPDWIIQVWLEQLGFVETEKLCEWMNQTPTIDLRVNLLRSSIEQVESAFKSAGVLV 206
Query: 283 LQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 342
++P L + +R+ + +EG VQD SA LV ++DPQPG+ ++D
Sbjct: 207 RRIPS-----LPQALRLIGSTGPIQNLPGFREGWWTVQDSSAQLVSHLLDPQPGEVVIDV 261
Query: 343 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN 402
CAAPGGKT ++A + G V+A D RLR L + A+ ++S I D R
Sbjct: 262 CAAPGGKTTHIAELMGDNGKVWACDRTPSRLRKLQQNAQRLNLHS-IEICTGDSRNLPQF 320
Query: 403 STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLV 462
D+VL+DAPCSGLG + + AD RW + E + EL +LQ ELL S VK GGVLV
Sbjct: 321 QNT-ADRVLIDAPCSGLGTMHRHADARWRQTPESVRELSLLQTELLAHTSTFVKQGGVLV 379
Query: 463 YSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVP-SDFVTKHGFFFSDPIKHSLDGAFA 521
Y+TC++ P ENE + FL +P + I+ +P S + G+ P + +DG F
Sbjct: 380 YATCTLHPAENEGVISQFLAEYPHWQIETDSLDLPDSAYSVPPGWLKVWPHQQDMDGFFM 439
Query: 522 ARL 524
RL
Sbjct: 440 VRL 442
>gi|296133297|ref|YP_003640544.1| sun protein [Thermincola potens JR]
gi|296031875|gb|ADG82643.1| sun protein [Thermincola potens JR]
Length = 451
Score = 228 bits (580), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 148/426 (34%), Positives = 223/426 (52%), Gaps = 19/426 (4%)
Query: 108 DDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-M 166
+ +D +T++V GT++ LD + + S+ P + I+R+G Y+I +D +
Sbjct: 36 EKKDRAFITELVYGTLKRLNTLDWIAGRFV--SRPLDSLTPWIRNIIRMGIYQIFFMDKV 93
Query: 167 PPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATI 226
P A +E+V LA+ G VNG+LR +V KD P D L+
Sbjct: 94 PNSAACNESVNLARKFGHQGTVKFVNGVLRNVVRHKDRVKWP-----DKDAEPVEYLSIH 148
Query: 227 YSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVP 286
YSHP WMV W + G EE KL NN P S+R N+ K ++R +L+ L ++
Sbjct: 149 YSHPTWMVSLWIEEFGFEETEKLCRANNETPPNSIRTNTLK-ISRDELIGVLAGEGVEC- 206
Query: 287 HELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAP 346
E I + +G +++ +GL VQDES+ +V +V P+PG ++D C+AP
Sbjct: 207 -RKGEFAPETINI-SGFKSIASLKSHAQGLYLVQDESSTMVGHIVAPKPGSKVIDACSAP 264
Query: 347 GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVK 406
GGKT ++A ++ QG + A DI++ ++ ++ E VN +I D R
Sbjct: 265 GGKTTHLAQLMNNQGRILAGDIHQHKMGLIKENCSRLGVN-IIEPALVDARELHKEYKEW 323
Query: 407 CDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTC 466
D VL+DAPCSGLGVL +R +LRW + + +EL LQ +L +A+ VK GGVLVYSTC
Sbjct: 324 ADFVLVDAPCSGLGVLRRRPELRWRKTVNRFDELTALQLAILRSAAQCVKAGGVLVYSTC 383
Query: 467 SIDPEENEERVEAFLLRHPEFSIDPADGLVP-----SDFVT-KHGFFFSDPIKHSLDGAF 520
+++ EN + V +FL PEF +D L P + F T G+ P H DG F
Sbjct: 384 TVNRRENLDLVRSFLENAPEFRLDSLLPLFPDTCDRTKFPTAAEGYIQFLPHVHGTDGFF 443
Query: 521 AARLVR 526
AAR+V+
Sbjct: 444 AARMVK 449
>gi|348027000|ref|YP_004766805.1| ribosomal RNA small subunit methyltransferase B [Megasphaera
elsdenii DSM 20460]
gi|341823054|emb|CCC73978.1| ribosomal RNA small subunit methyltransferase B [Megasphaera
elsdenii DSM 20460]
Length = 446
Score = 228 bits (580), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 146/425 (34%), Positives = 227/425 (53%), Gaps = 30/425 (7%)
Query: 109 DRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL-DMP 167
DRD R T++V GT+R YLD +I + + ++P+ L I+R+G Y+I + +P
Sbjct: 36 DRDRRFYTELVYGTLRCLNYLDWIISQI--STRKLKKLDPVCLAIIRLGLYQIFGMTKVP 93
Query: 168 PYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIY 227
A +E V++A G VN +LR + +D +P D+ LA Y
Sbjct: 94 ESAACNEAVKMATKFGNKGMAKFVNAMLRNSIRRRDQFIIP-----DKDKNLTAYLALTY 148
Query: 228 SHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV-P 286
W+VRRW + G ++ +L + ++ P+ LR N+ +R DL+ +L P
Sbjct: 149 HQQGWLVRRWLEEYGPDDTERLCQYFDTIPALCLRVNT-AVTSREDLLAELEKQGQPARP 207
Query: 287 HELS---LHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCC 343
+S ++LD G + + L++G +QDE + LV +VDPQP + + D C
Sbjct: 208 AAISPDGIYLD-------GNPGIHELTCLRDGRAIIQDEPSQLVAHIVDPQPHEVVFDVC 260
Query: 344 AAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS 403
AAPGGKT ++A+ +VY DI++ +LR++ A+ + +V RT+ + T
Sbjct: 261 AAPGGKTTHLATLGGPSCVVYGGDIHEHKLRLIEYNAQKLGLKNV-RTLLQNGCTIGQKY 319
Query: 404 TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463
K D+VL+DAPCSGLGVL + DLRW + D+ L LQ +LD+AS V+PGGVLVY
Sbjct: 320 AGKADRVLVDAPCSGLGVLRHKIDLRWRKNPSDLRTLPALQRRILDSASQCVRPGGVLVY 379
Query: 464 STCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHG----FFFSDPIKHSLDGA 519
STC+++ +EN V FL HPEF ++ A + ++T G F P + +LDG
Sbjct: 380 STCTMNDDENSRIVADFLKNHPEFHVENA-----TQWLTVPGHEGPFIQLLPQRDNLDGF 434
Query: 520 FAARL 524
F AR+
Sbjct: 435 FIARM 439
>gi|219669868|ref|YP_002460303.1| sun protein [Desulfitobacterium hafniense DCB-2]
gi|423074032|ref|ZP_17062766.1| ribosomal RNA small subunit methyltransferase B [Desulfitobacterium
hafniense DP7]
gi|219540128|gb|ACL21867.1| sun protein [Desulfitobacterium hafniense DCB-2]
gi|361855126|gb|EHL07128.1| ribosomal RNA small subunit methyltransferase B [Desulfitobacterium
hafniense DP7]
Length = 453
Score = 227 bits (579), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 164/481 (34%), Positives = 249/481 (51%), Gaps = 52/481 (10%)
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDD-RDLRLVTDIV 119
RA++ L RI+ A+A+L+ +K DL D R+ +L T +V
Sbjct: 7 RALAVQILRRIEEEKAYANLVMQKA------------------LHDLSDPRERQLATLLV 48
Query: 120 GGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPPYAV-VDENVRL 178
GT++ R LD+ L H K S + + ILRI +I+ L P AV ++E V L
Sbjct: 49 NGTLKHRLTLDY--ALRRHLRKPLSQLPHEVRWILRISALQILYLSRIPAAVAINEGVEL 106
Query: 179 AKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWT 238
K + +LVN +LR++ L+ + P ++ R L+ YSHP WMV+RW
Sbjct: 107 TK-KQQGKYTSLVNSVLRRV--LETGWDMLWP---SKEKEPVRFLSLRYSHPEWMVKRWL 160
Query: 239 KYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLN------LLKLQVPHELSLH 292
K G + L NN +R N+ K ++RADL +L + +VP SL
Sbjct: 161 KRYGMADTEALCQANNEPAPVWIRTNTLK-ISRADLQARLEGEGVKVTIGERVPE--SLV 217
Query: 293 LDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLY 352
+++F ++ + +EG VQDES+ L+ V++PQ GQ ++D C APGGKT +
Sbjct: 218 IEDF-------GSLDKLPSFQEGHFTVQDESSQLIAHVLNPQAGQKVLDACGAPGGKTTH 270
Query: 353 MASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 412
+A + QG + A DI+ +++++ + A + ++IR D R A C KVL+
Sbjct: 271 LAQRMENQGEILAFDIHPHKVKLIEDLAARLGI-TIIRAQAGDARELAGVKDASCHKVLV 329
Query: 413 DAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEE 472
DAPCSGLGVL +RAD+RW++ ++++ L LQ +L+ A+ V GG LVYSTC+I+PEE
Sbjct: 330 DAPCSGLGVLRRRADMRWHKEEDEIKTLPALQLAILERAAQCVAAGGELVYSTCTIEPEE 389
Query: 473 NEERVEAFLLRHPEFSIDPADGLVPSDFVTKH-------GFFFSDPIKHSLDGAFAARLV 525
N E V+AF HPEF G +P ++ GF P K +DG F A+
Sbjct: 390 NFEVVKAFRANHPEFITVDFSGELPYSLASEQDRKQAAKGFLQILPHKQGMDGFFLAKFR 449
Query: 526 R 526
R
Sbjct: 450 R 450
>gi|403069237|ref|ZP_10910569.1| hypothetical protein ONdio_06550 [Oceanobacillus sp. Ndiop]
Length = 451
Score = 227 bits (578), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 151/470 (32%), Positives = 250/470 (53%), Gaps = 40/470 (8%)
Query: 69 MRIQFGGAFADLLNKKGKGSG------DNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGT 122
M+ Q DLL + K SG DNE+ ++K + +D L+T++V GT
Sbjct: 4 MKYQLRNTILDLLIRIEKDSGFSHLVIDNEL---------KSKRIAPKDEGLLTEVVYGT 54
Query: 123 IRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKV 181
I+ + LD+ + + K M+ + +LR+ Y+++ LD +P +A++ E V +AK
Sbjct: 55 IQRKMTLDYFLNHFVNANK---KMDQWVRMLLRMSIYQMIYLDKVPDHAIIHEAVEIAKQ 111
Query: 182 ALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYL 241
G +LVNG+LR + N +P ND A L+ SHP W+V RW
Sbjct: 112 RGHKGVSSLVNGVLRNV----QRNGVPETASIKND---ATRLSIETSHPKWLVERWVSTY 164
Query: 242 GQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFIRVKT 301
G + A + N + S+R K +TR + L +V S+ + I V
Sbjct: 165 GLQTAKAMCEANLTKKHSSIRVQPLK-ITREKAMQVLREQGFEV--RKSIFSPQGIIVDK 221
Query: 302 GLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQG 361
G N++ L KEG +QD+S+ LV ++DPQPG ++D C+APGGK ++A + +G
Sbjct: 222 G--NILNTMLFKEGYVTIQDQSSMLVAEMLDPQPGMHVLDGCSAPGGKVTHIAEKMENEG 279
Query: 362 LVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-NSTVKCDKVLLDAPCSGLG 420
+++A D++K +++++++ A L + S+I D R D + D++L+DAPCSGLG
Sbjct: 280 VIHAYDLHKKKVKLIDDKAALLHL-SIIDAKPGDARKLEDMHERESFDRILIDAPCSGLG 338
Query: 421 VLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAF 480
V+ + ++++++R ED+ L +Q E+L++A+ L+K G+L+YSTC++D EENE ++ F
Sbjct: 339 VIRGKPEIKYDKREEDIHRLSEIQTEILESAAPLLKKDGLLIYSTCTVDAEENENVIKQF 398
Query: 481 LLRHPEFSIDPA------DGLVPSDFVTKHGFFFSDPIKHSLDGAFAARL 524
LL + F IDP+ L S +T+ G P DG F RL
Sbjct: 399 LLNNTGFQIDPSFFETLPSELKESPGITEQGLQLF-PQTFQTDGFFLTRL 447
>gi|17228315|ref|NP_484863.1| sun protein [Nostoc sp. PCC 7120]
gi|17130165|dbj|BAB72777.1| sun protein [Nostoc sp. PCC 7120]
Length = 449
Score = 227 bits (578), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 154/431 (35%), Positives = 227/431 (52%), Gaps = 23/431 (5%)
Query: 101 GFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQ-ILRIGFY 159
+ +L D D RLVT+++ G++R +R LD +I L K S +P L+ IL +G Y
Sbjct: 28 ALQKANLSDIDRRLVTELLYGSVRRQRTLDFIIDQLA---KKKSHQQPTELRSILHLGLY 84
Query: 160 EI-VKLDMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNS--LPLPKLEGND 216
++ + +P A V+ V LAK G VNG+LR+ + L + + L LP+
Sbjct: 85 QLRYQERIPASAAVNTTVELAKDNGFAGLTGFVNGLLRQYIRLAEASPDFLELPE----- 139
Query: 217 RAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSR-KGVTRADLV 275
L ++S P W+++ W + LG E KL W N P+ LR N V +
Sbjct: 140 -NPVERLGILHSFPDWIIKVWWEQLGLTETEKLCEWMNQTPTLDLRVNPLLASVAEVETA 198
Query: 276 MQ-LNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQ 334
++ +L +PH L + +R+ ++ + +G VQD SA LV ++DPQ
Sbjct: 199 LKSAGVLARPIPH-----LPQALRLIGNNGSIQKLPGFSQGWWIVQDASAQLVGHLLDPQ 253
Query: 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHA 394
PG+ I+D CAAPGGKT ++A + +G V+A D RLR L E A+ ++S+ I
Sbjct: 254 PGEVIIDACAAPGGKTTHIAELMKDEGKVWAGDRTASRLRKLKENAQRLNLHSIEICI-G 312
Query: 395 DLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLL 454
D R V D+VLLDAPCSGLG L + AD RW + E ++EL +LQ ELL S
Sbjct: 313 DSRNLPQFYDV-ADRVLLDAPCSGLGTLHRHADARWRQTPESVQELSMLQKELLAHTSKF 371
Query: 455 VKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVP-SDFVTKHGFFFSDPIK 513
VK GGVLVY+TC++ P ENEE + F+ + ++ I+P P S + T G+ P
Sbjct: 372 VKVGGVLVYATCTLHPAENEEVITEFVAGNSDWQIEPPRPDSPYSAYTTPQGWLKVWPHN 431
Query: 514 HSLDGAFAARL 524
+DG F RL
Sbjct: 432 QDMDGFFMVRL 442
>gi|56419708|ref|YP_147026.1| RNA-binding Sun protein [Geobacillus kaustophilus HTA426]
gi|375008141|ref|YP_004981774.1| hypothetical protein [Geobacillus thermoleovorans CCB_US3_UF5]
gi|56379550|dbj|BAD75458.1| RNA-binding Sun protein [Geobacillus kaustophilus HTA426]
gi|359286990|gb|AEV18674.1| hypothetical protein GTCCBUS3UF5_13610 [Geobacillus thermoleovorans
CCB_US3_UF5]
Length = 444
Score = 227 bits (578), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 149/424 (35%), Positives = 230/424 (54%), Gaps = 23/424 (5%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
LD RD L+T+IV GT++ R LD+ + + +EP + +LR+ Y++V LD
Sbjct: 34 LDGRDAALLTEIVYGTVQRRDTLDYYLAPFLRKAR---RLEPWVRVLLRLTLYQMVYLDR 90
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A V E V +AK G +LVNG+LR + LP +E D A R LA
Sbjct: 91 VPDRAAVFEAVEIAKRRGHRGIASLVNGVLRAI------GREGLPSIEAVDDAGKR-LAL 143
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
SHP W+VRRW + G EEA ++ N P + R N RA + L L+ +
Sbjct: 144 ATSHPEWLVRRWIQQYGYEEAARMCETNLRPPQSTARVNR----LRATVEEALERLRAEG 199
Query: 286 PHELSLHL-DEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 344
+ H+ E IR + G N+ + G +QDES+ LV +DP PG+ ++DCCA
Sbjct: 200 MQAIPGHVAPEAIRAEKG--NLAHTETFRAGWLTIQDESSMLVARALDPAPGERVLDCCA 257
Query: 345 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNST 404
APGGKT ++A + G+G V A+DI++ ++ ++ + AK +++V T+ D R +
Sbjct: 258 APGGKTTHIAERMDGRGEVVAVDIHERKVMMIEQQAKRLGLDNVA-TLALDSRRLGERFA 316
Query: 405 VKC-DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463
+ D+VL+DAPC+G GV+ ++ ++++ + + + L +Q +L AA+ L+K GG LVY
Sbjct: 317 PESFDRVLVDAPCTGFGVIRRKPEIKYTKGKDAIAALVEIQQAILRAAAPLLKKGGTLVY 376
Query: 464 STCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKH---GFFFSDPIKHSLDGAF 520
STC+++ EENEE + FL HP+F +D + + V H G P DG F
Sbjct: 377 STCTVEREENEEAIARFLADHPDFFLDASLAERMPEPVRPHVKGGMLQLLPHHFDSDGFF 436
Query: 521 AARL 524
ARL
Sbjct: 437 IARL 440
>gi|448237330|ref|YP_007401388.1| ribosomal RNA small subunit methyltransferase B [Geobacillus sp.
GHH01]
gi|445206172|gb|AGE21637.1| ribosomal RNA small subunit methyltransferase B [Geobacillus sp.
GHH01]
Length = 444
Score = 226 bits (577), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 149/424 (35%), Positives = 229/424 (54%), Gaps = 23/424 (5%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
LD RD L+T+IV GT++ R LD+ + + +EP + +LR+ Y++V LD
Sbjct: 34 LDGRDAALLTEIVYGTVQRRDTLDYYLAPFLRKAR---RLEPWVRVLLRLTLYQMVYLDR 90
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A V E V +AK G +LVNG+LR + LP +E D A R LA
Sbjct: 91 VPDRAAVFEAVEIAKRRGHRGIASLVNGVLRAI------GREGLPSIEAVDDAGKR-LAL 143
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
SHP W+VRRW + G EEA ++ N P + R N RA + L L+ +
Sbjct: 144 ATSHPEWLVRRWIQQYGYEEAARMCETNLRPPQSTARVNR----LRATVEEALERLRAEG 199
Query: 286 PHELSLHL-DEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 344
+ H+ E IR + G N+ + G +QDES+ LV +DP PG+ ++DCCA
Sbjct: 200 MQAIPGHVAPEAIRAEKG--NLAHTETFRAGWLTIQDESSMLVARALDPAPGERVLDCCA 257
Query: 345 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNST 404
APGGKT ++A + G+G V A+DI++ ++ ++ + AK +++V T+ D R +
Sbjct: 258 APGGKTTHIAERMGGRGEVVAVDIHEHKVMLIEQQAKRLGLDNVA-TLALDSRRLGERFA 316
Query: 405 VKC-DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463
+ D+VL+DAPC+G GV+ ++ ++++ + + + L +Q +L AA+ L+K GG LVY
Sbjct: 317 PESFDRVLVDAPCTGFGVIRRKPEIKYTKGKDAIAALVEIQQAILRAAAPLLKKGGTLVY 376
Query: 464 STCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKH---GFFFSDPIKHSLDGAF 520
STC+++ EENEE + FL HP+F +D + V H G P DG F
Sbjct: 377 STCTVEREENEEAIARFLADHPDFFLDASLAERMPKPVRPHVKGGMLQLLPHHFDSDGFF 436
Query: 521 AARL 524
ARL
Sbjct: 437 IARL 440
>gi|297530652|ref|YP_003671927.1| sun protein [Geobacillus sp. C56-T3]
gi|297253904|gb|ADI27350.1| sun protein [Geobacillus sp. C56-T3]
Length = 444
Score = 226 bits (577), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 149/424 (35%), Positives = 229/424 (54%), Gaps = 23/424 (5%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
LD RD L+T+IV GT++ R LD+ + + +EP + +LR+ Y++V LD
Sbjct: 34 LDGRDAALLTEIVYGTVQRRDTLDYYLAPFLRKAR---RLEPWVRVLLRLTLYQMVYLDR 90
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A V E V +AK G +LVNG+LR + LP +E D A R LA
Sbjct: 91 VPDRAAVFEAVEIAKRRGHRGIASLVNGVLRAI------GREGLPSIEAVDDAGKR-LAL 143
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
SHP W+VRRW + G EEA ++ N P + R N RA + L L+ +
Sbjct: 144 ATSHPEWLVRRWIQQYGYEEAARMCETNLRPPQSTARVNR----LRATVEEALERLRAEG 199
Query: 286 PHELSLHL-DEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 344
+ H+ E IR + G N+ + G +QDES+ LV +DP PG+ ++DCCA
Sbjct: 200 MQAIPGHVAPEAIRAEKG--NLAHTETFRAGWLTIQDESSMLVARALDPAPGERVLDCCA 257
Query: 345 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNST 404
APGGKT ++A + G+G V A+DI++ ++ ++ + AK +++V T+ D R +
Sbjct: 258 APGGKTTHIAERMDGRGEVVAVDIHEHKVMLIEQQAKRLGLDNVA-TLALDSRRLGERFA 316
Query: 405 VKC-DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463
+ D+VL+DAPC+G GV+ ++ ++++ + + + L +Q +L AA+ L+K GG LVY
Sbjct: 317 PESFDRVLVDAPCTGFGVIRRKPEIKYTKGKDAIAALVEIQQAILRAAAPLLKKGGTLVY 376
Query: 464 STCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKH---GFFFSDPIKHSLDGAF 520
STC+++ EENEE + FL HP+F +D + V H G P DG F
Sbjct: 377 STCTVEREENEEAIARFLADHPDFFLDASLAERMPKPVRPHVKGGMLQLLPHHFDSDGFF 436
Query: 521 AARL 524
ARL
Sbjct: 437 IARL 440
>gi|284047695|ref|YP_003398034.1| sun protein [Acidaminococcus fermentans DSM 20731]
gi|283951916|gb|ADB46719.1| sun protein [Acidaminococcus fermentans DSM 20731]
Length = 446
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 144/395 (36%), Positives = 220/395 (55%), Gaps = 25/395 (6%)
Query: 101 GFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYE 160
G R L D +L T++V GT++ LD + + + + ++PL+L ILR+G Y+
Sbjct: 33 GLRGATLSPLDRKLTTELVYGTVKTMGTLDWYLSRVVN--RPLRKLDPLVLVILRLGAYQ 90
Query: 161 IVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQ 219
++ LD +P A +E+V+LAK + GAG LVNG LR+L +D P +G D
Sbjct: 91 LLYLDRIPASAACNESVKLAKKWVHEGAGKLVNGALRQLARTRDQWKFP----QGPDHEL 146
Query: 220 ARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLN 279
R +A Y HP W+VRRW G EEA+KL ++N+ P+FS R N+ + TR L +L
Sbjct: 147 ER-IALEYYHPEWLVRRWKFRYGLEEAVKLCAFDNARPAFSFRVNTLRD-TREGLQEKLA 204
Query: 280 LLKLQV-PHELSLHLDEFIRVKTGL--QNVIQAGLLKEGL---CAVQDESAGLVVAVVDP 333
++ P + S GL ++ L EG +QDES+ L AV+DP
Sbjct: 205 EKGIRTRPSQWS---------PDGLLCDSLPSLDDLVEGFGPDIYIQDESSMLDAAVLDP 255
Query: 334 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIH 393
QPG+ ++D C+APGGKT ++A + QG + A+D+ +L ++ E A+ ++ IRT
Sbjct: 256 QPGERVLDLCSAPGGKTTHLAQKMQDQGEILALDLYDHKLDLVRENARRLGIH-CIRTEK 314
Query: 394 ADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASL 453
D F +VL+DAPCSGLGVL++RA+ RW + + + LQ ++L +
Sbjct: 315 QDGTVFVPEWENTAHRVLVDAPCSGLGVLNRRAEARWTKEERSLSQFPPLQKKILANGAR 374
Query: 454 LVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFS 488
V PGG L+YSTC+++ +EN + FL HPEF+
Sbjct: 375 YVMPGGRLLYSTCTLEQDENTRVRKWFLENHPEFA 409
>gi|323701798|ref|ZP_08113469.1| sun protein [Desulfotomaculum nigrificans DSM 574]
gi|333923478|ref|YP_004497058.1| sun protein [Desulfotomaculum carboxydivorans CO-1-SRB]
gi|323533334|gb|EGB23202.1| sun protein [Desulfotomaculum nigrificans DSM 574]
gi|333749039|gb|AEF94146.1| sun protein [Desulfotomaculum carboxydivorans CO-1-SRB]
Length = 453
Score = 226 bits (576), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 146/425 (34%), Positives = 222/425 (52%), Gaps = 29/425 (6%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPY 169
D T+I G +R +D ++ ++ ++ + ILR+G Y+I+ + +P
Sbjct: 41 DRAFATEITYGVLRNLNTIDWVLAHFL--KQPLAAQTVWVRNILRMGTYQIMFMPRVPDS 98
Query: 170 AVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSH 229
A +E+V LAK GA VNG+LR + + P P+ D ++ YSH
Sbjct: 99 AACNESVELAKKYGHTGAAKFVNGVLRNVARQQGELDFPDPQESPIDY-----ISLKYSH 153
Query: 230 PVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV---- 285
P W+V RW K G ++ + L NN ++R N+ K + R DL +L ++
Sbjct: 154 PTWLVERWLKEFGFDQTVALCKANNHPAPNTIRTNTLK-INRTDLKARLEFEGVETRVTK 212
Query: 286 --PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCC 343
P LHL+ F+ ++ +EGL VQDES+ LV ++P G I+D
Sbjct: 213 YAPE--GLHLNGFLSYQS-------LPSFQEGLFQVQDESSMLVAHALNPASGARIIDVA 263
Query: 344 AAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS 403
+APGGKT ++A + +G + A+DI+ +L ++ E + +NS IRT+ AD R
Sbjct: 264 SAPGGKTTHLAQLMKDRGEIVAVDIHPHKLELIKENCQRLGINS-IRTLLADARCLPAEY 322
Query: 404 TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463
T D VL+DAPCSGLGVL +R D RW + + + LQ E+L++AS ++PGGVL+Y
Sbjct: 323 TNWADYVLVDAPCSGLGVLRRRPDARWRKDPSQLPGIVRLQREILESASTYLRPGGVLIY 382
Query: 464 STCSIDPEENEERVEAFLLRHPEFSIDPADGLVP----SDFVTKHGFFFSDPIKHSLDGA 519
STC+I EEN +EAFL HPEFS+ +P + ++GF P H +DG
Sbjct: 383 STCTITREENIGVLEAFLADHPEFSLGDLRQFLPPGLAEEETAENGFIQLLPHIHGMDGF 442
Query: 520 FAARL 524
F ARL
Sbjct: 443 FIARL 447
>gi|261419371|ref|YP_003253053.1| sun protein [Geobacillus sp. Y412MC61]
gi|319766186|ref|YP_004131687.1| sun protein [Geobacillus sp. Y412MC52]
gi|261375828|gb|ACX78571.1| sun protein [Geobacillus sp. Y412MC61]
gi|317111052|gb|ADU93544.1| sun protein [Geobacillus sp. Y412MC52]
Length = 444
Score = 226 bits (575), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 149/424 (35%), Positives = 229/424 (54%), Gaps = 23/424 (5%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
LD RD L+T+IV GT++ R LD+ + + +EP + +LR+ Y++V LD
Sbjct: 34 LDGRDAALLTEIVYGTVQRRDTLDYYLAPFLRKAR---RLEPWVRVLLRLTLYQMVYLDR 90
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A V E V +AK G +LVNG+LR + LP +E D A R LA
Sbjct: 91 VPDRAAVFEAVEIAKRRGHRGIASLVNGVLRAI------GREGLPSIEAVDDAGKR-LAL 143
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
SHP W+VRRW + G EEA ++ N P + R N RA + L L+ +
Sbjct: 144 ATSHPEWLVRRWIQQYGYEEAARMCETNLRPPQSTARVNR----LRATVEEALERLRAEG 199
Query: 286 PHELSLHL-DEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 344
+ H+ E IR + G N+ + G +QDES+ LV +DP PG+ ++DCCA
Sbjct: 200 MQVIPGHVAPEAIRAEKG--NLAHTETFRAGWLTIQDESSMLVARALDPAPGERVLDCCA 257
Query: 345 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNST 404
APGGKT ++A + G+G V A+DI++ ++ ++ + AK +++V T+ D R +
Sbjct: 258 APGGKTTHIAERMDGRGEVVAVDIHEHKVMLIEQQAKRLGLDNVA-TLSLDSRRLGERFA 316
Query: 405 VKC-DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463
+ D+VL+DAPC+G GV+ ++ ++++ + + + L +Q +L AA+ L+K GG LVY
Sbjct: 317 PESFDRVLVDAPCTGFGVIRRKPEIKYTKGKDAIAALVEIQQAILRAAAPLLKKGGTLVY 376
Query: 464 STCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKH---GFFFSDPIKHSLDGAF 520
STC+++ EENEE + FL HP+F +D + V H G P DG F
Sbjct: 377 STCTVEREENEEAIARFLADHPDFFLDASLAERMPKPVRPHVKGGMLQLLPHHFDSDGFF 436
Query: 521 AARL 524
ARL
Sbjct: 437 IARL 440
>gi|119512103|ref|ZP_01631196.1| Fmu, rRNA SAM-dependent methyltransferase [Nodularia spumigena
CCY9414]
gi|119463261|gb|EAW44205.1| Fmu, rRNA SAM-dependent methyltransferase [Nodularia spumigena
CCY9414]
Length = 449
Score = 226 bits (575), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 154/426 (36%), Positives = 223/426 (52%), Gaps = 25/426 (5%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPL-LLQILRIGFYEI-VKL 164
L + D RL+T++V G++R +R LD LI L + S +P L IL +G Y++ +
Sbjct: 34 LPNHDRRLLTELVYGSVRRQRTLDTLIDQLATKK---SHQQPKDLRSILHLGLYQLRYQE 90
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P A V+ V+LAK G VNG+LR+ + L PL KL N L
Sbjct: 91 RIPASAAVNTTVQLAKENGFSGLTGFVNGLLRQYIRLAQKLPEPL-KLPENP---VERLG 146
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANS-RKGVTRADLVMQ-LNLLK 282
++S P W+++ W L E L W N P+ LR N R + + ++ +L
Sbjct: 147 ILHSFPDWIIQVWLDQLDLVETENLCDWMNQTPTIDLRINPLRTSIEEVEAALESAGILT 206
Query: 283 LQV---PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSI 339
+V P L L I +QN+ EG +VQD SA LV ++ PQ G+ +
Sbjct: 207 RRVNNCPQALRL-----IGSTGAIQNLPG---FNEGWWSVQDASAQLVGYLLHPQAGEVV 258
Query: 340 VDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF 399
+D CAAPGGKT ++A + +G ++A D RLR L E A+ + S I+ D R
Sbjct: 259 IDACAAPGGKTTHIAELMGDEGEIWACDRTASRLRKLKENAQRLHLQS-IQICTGDSRNL 317
Query: 400 ADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGG 459
+ + D++LLDAPCSGLG L + AD RW + LE ++EL ILQ EL+ S VKPGG
Sbjct: 318 PQFNH-RGDRLLLDAPCSGLGTLHRHADARWRQTLESVQELSILQTELISQTSQFVKPGG 376
Query: 460 VLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADG-LVPSDFVTKHGFFFSDPIKHSLDG 518
VLVY+TC++ P ENE + FL HP++ I P + S + T G+ P + ++DG
Sbjct: 377 VLVYATCTLHPAENEGVISTFLANHPQWQIYPPSADFLDSAYSTPQGWLKVWPHRQNMDG 436
Query: 519 AFAARL 524
F RL
Sbjct: 437 FFMVRL 442
>gi|443328422|ref|ZP_21057020.1| ribosomal RNA small subunit methyltransferase RsmB [Xenococcus sp.
PCC 7305]
gi|442792007|gb|ELS01496.1| ribosomal RNA small subunit methyltransferase RsmB [Xenococcus sp.
PCC 7305]
Length = 480
Score = 226 bits (575), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 167/476 (35%), Positives = 249/476 (52%), Gaps = 30/476 (6%)
Query: 54 NLEVSPHRAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLR 113
NL V R ++ L +I+ G A+ D+ + R L R + RD
Sbjct: 21 NLLVIDSRQLAFEALQKIEQGQAYTDIA--------------LARILSNRK--ISPRDRG 64
Query: 114 LVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVV 172
L++ +V G +R +R L+ LI +K P L IL +G Y++ L+ +P A V
Sbjct: 65 LISQLVYGVVRHKRSLNVLID--NFGKKKAQQQPPKLRIILYLGLYQLGYLNQIPDSAAV 122
Query: 173 DENVRLAKVALRPGAGNLVNGILRKLV-LLKDNNSLPLPKLEGNDRAQARALATIYSHPV 231
+ +V LAK +VNG+LR + + N L P L+ R L +YS P
Sbjct: 123 NTSVELAKANGLSKLAGVVNGVLRNYIRQVSKANHLASPILKLPKDPVQR-LGVLYSFPD 181
Query: 232 WMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANS-RKGVTRADLVM-QLNLLKLQVPHEL 289
W+V W + L EE +L+ W N PS LR N +K + + + + ++P+
Sbjct: 182 WIVETWLQQLSLEETEQLLAWFNQTPSVDLRVNILKKSLEEVESAFAEAGIAVSRIPY-- 239
Query: 290 SLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGK 349
L + +R+ G + Q +EG VQD SA LV +DPQPG+SI+D CAAPGGK
Sbjct: 240 ---LPQALRLTGGNGAIDQLPGYREGWWTVQDGSAQLVTHFLDPQPGESIIDACAAPGGK 296
Query: 350 TLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDK 409
T ++A L +G ++A D +K RL+ + A Q+NS+ D R D +CD+
Sbjct: 297 TTHIAELLGDRGTIWACDRSKKRLQKVRANAARLQLNSIQIQPAGDSRDLIDLPR-QCDR 355
Query: 410 VLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSID 469
+LLD PCSGLG L KR D+RW + E + +L +LQ ELL AA+ VKP GVLVY+TCSI+
Sbjct: 356 LLLDVPCSGLGTLHKRPDIRWRQTPEKILQLSLLQQELLSAAATRVKPQGVLVYATCSIN 415
Query: 470 PEENEERVEAFLLRHPEFSID-PADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARL 524
+ENE+ VE+FL HP +SI P + ++F G+ P ++++DG F +
Sbjct: 416 SQENEKVVESFLGSHPNWSIAVPDTESIVNNFDMARGWVKVYPHRYNMDGFFLVKF 471
>gi|254423387|ref|ZP_05037105.1| ribosomal RNA small subunit methyltransferase B [Synechococcus sp.
PCC 7335]
gi|196190876|gb|EDX85840.1| ribosomal RNA small subunit methyltransferase B [Synechococcus sp.
PCC 7335]
Length = 491
Score = 225 bits (574), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 164/468 (35%), Positives = 248/468 (52%), Gaps = 45/468 (9%)
Query: 75 GAFADL-LNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLI 133
GAFAD+ +++K KG+ LG + L +D LVT++V G++R RR LD LI
Sbjct: 52 GAFADVVIDRKLKGTQTGTQ------LGIQ---LSSQDKGLVTELVYGSVRRRRTLDALI 102
Query: 134 CLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVN 192
++ S LLQILR+GFY++ LD +P +AVVD V+LAK +VN
Sbjct: 103 DQF--GKRPASKQHRDLLQILRLGFYQLRYLDHVPVHAVVDTTVQLAKSQRLGKLSGVVN 160
Query: 193 GILRKLV--LLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLM 250
+LR+ + N + P +R R L ++S+P W++ W L ++ L
Sbjct: 161 AMLRQYAREAMPAANVIADPLKLPEERT--RRLGILHSYPDWIIDVWRSMLPDDQVEALC 218
Query: 251 VWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAG 310
+ N P LR N ++ A + + + +P E + +R+ T V Q
Sbjct: 219 EYFNRSPYLELRINLQRQSLSAAIALFADAGIEALPIE---GVPSALRLTTHAGAVTQLP 275
Query: 311 LLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINK 370
EG AVQD SA LV ++DPQPG+ I+D CAAPGGK+L++A + +G V++ D
Sbjct: 276 GYAEGWWAVQDSSAQLVSYLLDPQPGEVIIDACAAPGGKSLHIAELMRNEGTVWSCD--- 332
Query: 371 GRLRILNETAKLHQV-----NSVIRTIHADLR---TFADNSTVKCDKVLLDAPCSGLGVL 422
R + T K+ Q +++R I D R TF D+VLLD PCSGLG L
Sbjct: 333 ---RTSSRTKKIQQNIDRLGATIVRPIMGDSRNQPTFLGQG----DRVLLDVPCSGLGTL 385
Query: 423 SKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLL 482
++ AD RW + + ++ L LQ E+L AS VKPGGVLVY+TC++ P+ENE +++ FL
Sbjct: 386 NRHADARWRQTPDSVDSLVTLQQEILMHASTWVKPGGVLVYATCTLHPQENEAQIKTFLS 445
Query: 483 RHPEFSID---PADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARLVRA 527
++ ++I+ P+ G+ P T+ G+ P +DG F +L RA
Sbjct: 446 QNAGWTIEAPPPSFGIEP----TEAGWIKVWPHIQHMDGFFIVKLRRA 489
>gi|220928955|ref|YP_002505864.1| sun protein [Clostridium cellulolyticum H10]
gi|219999283|gb|ACL75884.1| sun protein [Clostridium cellulolyticum H10]
Length = 449
Score = 225 bits (574), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 134/425 (31%), Positives = 231/425 (54%), Gaps = 19/425 (4%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L + D T++V GT++W +D++ L + + P + ILR+G Y+++ D
Sbjct: 37 LREIDRSFATELVYGTVKWLLQIDYV--LGKYSSVKLKKLSPWIKNILRLGIYQLLHTDR 94
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A + V LAK + VN +LR + K N++P P N L+
Sbjct: 95 IPVSAACNTGVELAKRYGHQASSRFVNAVLRNIA--KSKNNIPYPDKSDN----VNYLSI 148
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLL-KLQ 284
+YSHPVWMV +W + G E +L+ NN P F +R N+ K D V L++L K
Sbjct: 149 LYSHPVWMVEKWIELYGTEFTEELLKSNNQVPDFIIRTNTLK----TDRVTLLDMLHKEG 204
Query: 285 VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 344
+ E +++E + +K+ ++ + K G VQDES+ L ++DP+ G++++D C+
Sbjct: 205 ISAEPGRYIEEAVILKSP-SSITNLEVFKNGYFQVQDESSMLAAKILDPKEGETVIDVCS 263
Query: 345 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNST 404
APGGK +MA ++ +G + A D+ + +L+++ ++ ++ + IH D + T
Sbjct: 264 APGGKATHMAQLMNNKGTIIARDVYQHKLKLIEQSCCRLGIDIIKTEIH-DACCLDETFT 322
Query: 405 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464
K D+VL+DAPCSGLG++ K+ D++++R +++ E+ LQ E+L +S +KPGG L+YS
Sbjct: 323 GKADRVLIDAPCSGLGIIRKKPDIKYSRTEKELREITGLQREILKNSSKYLKPGGYLLYS 382
Query: 465 TCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDF---VTKHGFFFSDPIKHSLDGAFA 521
TC+I EEN + V FL +P+F + L+P + G+ P + DG F
Sbjct: 383 TCTIQQEENLDIVSDFLEDNPDFRLTGFQELMPPTLDIASSAEGYIQLFPNINQTDGFFI 442
Query: 522 ARLVR 526
+++ R
Sbjct: 443 SKIKR 447
>gi|410667764|ref|YP_006920135.1| ribosomal RNA small subunit methyltransferase B [Thermacetogenium
phaeum DSM 12270]
gi|409105511|gb|AFV11636.1| ribosomal RNA small subunit methyltransferase B [Thermacetogenium
phaeum DSM 12270]
Length = 462
Score = 225 bits (574), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 144/422 (34%), Positives = 220/422 (52%), Gaps = 21/422 (4%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPY 169
DL L+T++V GT+R R +D +I C S M + I+R+G Y+++ LD +PP+
Sbjct: 47 DLALLTELVYGTLRMRGTIDWVID--CFSSTPVSKMSHAVRNIVRLGVYQLLFLDRIPPW 104
Query: 170 AVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSH 229
A +E V AK G VNG+LR + ++ S P P ++ ++ YSH
Sbjct: 105 AACNEAVEQAKRWRLAGLAGFVNGLLRSIARKREEISHPDPDVDPLSH-----ISVKYSH 159
Query: 230 PVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHEL 289
P W+V RW G+EE I L NN +R N+ K +T +L QL + V
Sbjct: 160 PAWLVERWLNRYGKEETIALCRANNKPAPLVIRCNTLK-ITPQELQQQLE--RENVIARF 216
Query: 290 SLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGK 349
S+ + E + T L ++ + L +EG AVQDES+ + V++P PG ++D C+ PGGK
Sbjct: 217 SMLVPEGL--VTNLSSLAELRLFQEGYFAVQDESSMIASLVLNPAPGSFVIDACSGPGGK 274
Query: 350 TLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDK 409
T +MA + +G + A+D++ RL ++ + K V S++ D+R K D
Sbjct: 275 TTHMAQIMQNRGRILALDVHSHRLELVAKACKRMGV-SIVEPKLMDVRELPFQLQEKADY 333
Query: 410 VLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSID 469
+L+D PCSGLGV+ +R DLRW + ED+ + Q E+L +AS + GG+LVYSTC+ +
Sbjct: 334 ILVDVPCSGLGVIRRRPDLRWRVKPEDLPQHARQQLEILKSASRCLAAGGILVYSTCTTE 393
Query: 470 PEENEERVEAFLLRHPEFSIDPADGLVPSDFV-------TKHGFFFSDPIKHSLDGAFAA 522
PEEN + FL +F + +P V + GF P +H DG F A
Sbjct: 394 PEENTGVIRQFLEECKDFQPEDLSLRLPFPLVWEEDKVTARSGFLQLFPHRHGTDGFFVA 453
Query: 523 RL 524
L
Sbjct: 454 CL 455
>gi|401565870|ref|ZP_10806681.1| ribosomal RNA small subunit methyltransferase B [Selenomonas sp.
FOBRC6]
gi|400183501|gb|EJO17754.1| ribosomal RNA small subunit methyltransferase B [Selenomonas sp.
FOBRC6]
Length = 448
Score = 225 bits (574), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 148/432 (34%), Positives = 222/432 (51%), Gaps = 29/432 (6%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
R L +RD R +T++V G + LD++I D +P + ++LR+GFY+I
Sbjct: 38 LRDTVLAERDRRFLTELVYGVTKAGESLDYMIGQYVAD---IRKAQPAIRELLRLGFYQI 94
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
+D +PP A + V LAK R GA + VNG+LR + + +LP G D A
Sbjct: 95 FVMDRVPPSAACNTAVELAKKHGRRGADSFVNGVLRAALRAPERAALPT----GRD---A 147
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
RALA HP WMV RW + G E L + NN+ S+R N+ + + R L+ Q
Sbjct: 148 RALALRSWHPAWMVERWMRAYGYERTEALCLCNNTSAPLSVRVNTLR-IDRLALMEQFAA 206
Query: 281 LKLQ------VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQ 334
+ VP + LH L ++ L+ GL VQDES+ LV V+ +
Sbjct: 207 AGAKARASRWVPDGIVLH------AHGALDDLPP---LRAGLAQVQDESSMLVAHVLGAE 257
Query: 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHA 394
PG +++D CAAPGGKT ++A + +G + A DI + ++R + + A+ + S+I
Sbjct: 258 PGMTVIDSCAAPGGKTTHIAQRMENRGRILAFDIYEEKIRRIEQNARRLGI-SIIEAQMR 316
Query: 395 DLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLL 454
D R D+VL+DAPCSGLGVL ++ D RW + D + L +Q +L +A+
Sbjct: 317 DAREIGAAYEGIADRVLVDAPCSGLGVLRRKPDARWKKSAPDRKTLPPIQRAILASAARA 376
Query: 455 VKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKH 514
VK GGVLVYSTC+++ EN V+ FL HP F+++ +P + + P
Sbjct: 377 VKAGGVLVYSTCTMEECENAAVVQDFLRAHPHFTLEQTGAFLPEQKIAEPMVQIM-PETD 435
Query: 515 SLDGAFAARLVR 526
DG F AR+ R
Sbjct: 436 GADGFFIARMRR 447
>gi|332981565|ref|YP_004463006.1| sun protein [Mahella australiensis 50-1 BON]
gi|332699243|gb|AEE96184.1| sun protein [Mahella australiensis 50-1 BON]
Length = 447
Score = 225 bits (573), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 149/438 (34%), Positives = 230/438 (52%), Gaps = 34/438 (7%)
Query: 101 GFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFS---SMEPLLLQILRIG 157
+ L D +TD+V G R+R LD LI K +S P + ILR+G
Sbjct: 30 ALKDNSLSTLDRAFITDMVYGVTRYRLTLDWLI-------KRYSRGGKASPWIRNILRMG 82
Query: 158 FYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGND 216
Y+I+ +D +P +A D +V LAK VN +LR+L+ KD+ L L D
Sbjct: 83 MYQILYMDRVPDFAACDSSVELAKKYAGQREAGYVNAVLRRLIQEKDH----LVSLFPQD 138
Query: 217 RAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVM 276
AL YS P WMVR W + + +L N PS ++RAN K +++ DL+
Sbjct: 139 TVSRIALK--YSFPEWMVRLWLNTMSETSVEELCAAQNIRPSLTIRANELK-ISQDDLIK 195
Query: 277 QLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGL--LKEGLCAVQDESAGLVVAVVDPQ 334
L + + + ++L E + ++ QNV L +GL AVQDE++ +V VVDP+
Sbjct: 196 LLE--QRSIMYSCGVYLPEALNIE---QNVDVESLPGYDDGLFAVQDEASMMVAHVVDPR 250
Query: 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHA 394
PGQ I+D C+APGGK ++MA + QG + ++D+ R+ ++ VN V +
Sbjct: 251 PGQIIIDACSAPGGKAVHMAQFMKDQGRILSVDVYPHRIELIKAQCARLGVNCV-EPVCY 309
Query: 395 DLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLL 454
D + ++ D VL+DAPCS LG++ + D++W R +D+ EL +Q ++LD SL
Sbjct: 310 DSTIYNEDWYGVADAVLIDAPCSALGIIRHKPDIKWRRIEKDIGELLQIQRQILDTCSLY 369
Query: 455 VKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPS------DFVTKHGFFF 508
VKP G L+YSTC+I+P+EN+ V +FL H +F +D +P D K F+
Sbjct: 370 VKPRGALIYSTCTINPDENQNMVNSFLNDHSDFILDDVYQKLPHALSASRDSRDKWVQFY 429
Query: 509 SDPIKHSLDGAFAARLVR 526
P + +DG F AR+++
Sbjct: 430 --PNEDKIDGFFVARMLK 445
>gi|428298107|ref|YP_007136413.1| sun protein [Calothrix sp. PCC 6303]
gi|428234651|gb|AFZ00441.1| sun protein [Calothrix sp. PCC 6303]
Length = 448
Score = 225 bits (573), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 156/425 (36%), Positives = 219/425 (51%), Gaps = 22/425 (5%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPL-LLQILRIGFYEI-VK 163
+L + D RLVT++V G++R +R LD +I + K S +P L IL +G Y++ +
Sbjct: 33 NLANLDRRLVTELVYGSVRRQRTLDAIIDKIA---KKKSQQQPKDLRTILHLGLYQLRYQ 89
Query: 164 LDMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARAL 223
+P A V+ V LAK PG L+NGILR+ + L D + +R L
Sbjct: 90 ERIPDSAAVNTTVDLAKEHGFPGLTGLINGILRQYLRLIDAGDEIITSSNPVER-----L 144
Query: 224 ATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANS-RKGVTRADLVMQLNLLK 282
+YS P W+++ W + G EE KL W N P+ LR N R V + + +K
Sbjct: 145 GILYSFPDWIIQVWVEQFGLEETEKLCQWMNQTPTIDLRVNLLRTTVEKVEAAFTAAGVK 204
Query: 283 LQVPHELSLHLDEFIRVKTGLQNVIQ--AGLLKEGLCAVQDESAGLVVAVVDPQPGQSIV 340
Q L L G IQ G L +G VQD SA LV ++DP+ + I+
Sbjct: 205 YQRLQYLPCGLRLL-----GHNGRIQDLPGFL-DGWWTVQDSSAQLVGYLLDPKLNEVII 258
Query: 341 DCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 400
D CAAPGGKT ++A + QG ++A D R+ L E + Q+ S IRT D R
Sbjct: 259 DTCAAPGGKTTHIAELMEDQGTIWACDRTASRMGKLKENIQRLQIQS-IRTCVGDSRDLP 317
Query: 401 DNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGV 460
+ + DKVLLDAPCSGLG L + AD RW + +++EL LQ EL+ S VKPGG+
Sbjct: 318 QFTGI-ADKVLLDAPCSGLGTLHRHADARWRQTSANVQELAKLQTELISQTSKFVKPGGI 376
Query: 461 LVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVP-SDFVTKHGFFFSDPIKHSLDGA 519
LVY+TC++ P+ENE + +FL HP I+ + P + T GF P +DG
Sbjct: 377 LVYATCTLHPQENEAVIASFLENHPNCQIEAPNPESPLAVHATPSGFIKVLPHNQDMDGF 436
Query: 520 FAARL 524
F RL
Sbjct: 437 FMVRL 441
>gi|404370888|ref|ZP_10976204.1| ribosomal RNA small subunit methyltransferase B [Clostridium sp.
7_2_43FAA]
gi|226912989|gb|EEH98190.1| ribosomal RNA small subunit methyltransferase B [Clostridium sp.
7_2_43FAA]
Length = 439
Score = 225 bits (573), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 148/421 (35%), Positives = 233/421 (55%), Gaps = 20/421 (4%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD 165
D++D+D L+T+IV GT+R +R LD LI D + ++ +L ILR+ Y++ LD
Sbjct: 33 DIEDKDKGLITEIVYGTLRRKRTLDVLIGNFVKD---INLIDTTVLNILRVAIYQMYFLD 89
Query: 166 -MPPYAVVDENVRLAK-VALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARAL 223
+P YA +E V AK V+L A LVNGILR + KD + +P GN + L
Sbjct: 90 KIPEYAACNEAVEEAKEVSLE--ASKLVNGILRNYI--KDEKEIVVP---GN---RIDEL 139
Query: 224 ATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKL 283
A +S WM+R + K G+E +KLM N P ++R N K D V + L ++
Sbjct: 140 AYKFSFQPWMIRLFIKQYGEERTMKLMAGLNETPKVTVRVNEFKA--EYDEVYE-KLEEI 196
Query: 284 QVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCC 343
E E I +K G + + L KEGL VQDESA LV ++D + G ++D C
Sbjct: 197 GYNIEDGYACPEAIAIKGG-KGIEDNQLFKEGLITVQDESAMLVAPLLDLKEGDKVLDLC 255
Query: 344 AAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS 403
AAPGGKT ++A L+ G V A D+++ +L ++ E AK +N+++ D +
Sbjct: 256 AAPGGKTTHIAELLANSGEVLAFDLHENKLSLIEENAKRLGLNNIV-CKAMDATKLNSDY 314
Query: 404 TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463
DKVL+D PCSGLG++ K+ +++WN+ + +++L +Q E+++ A +KPGG LVY
Sbjct: 315 ISYGDKVLIDVPCSGLGIIRKKPEIKWNKTRQQLKDLVPIQREIMENAWQYLKPGGTLVY 374
Query: 464 STCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAAR 523
STC+++ EENEE ++ FL +H + I+ ++F+ + S+DG F +
Sbjct: 375 STCTLNKEENEENLKWFLSKHNDAEIEKIYIGNNNNFIYNGDGSLTILPNDSMDGFFIGK 434
Query: 524 L 524
+
Sbjct: 435 I 435
>gi|288553113|ref|YP_003425048.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus pseudofirmus
OF4]
gi|288544273|gb|ADC48156.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus pseudofirmus
OF4]
Length = 448
Score = 224 bits (572), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 147/431 (34%), Positives = 234/431 (54%), Gaps = 41/431 (9%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
LD RD+ L+T++V GTI+ R LD+ + +K +E + +LR+ Y++V LD
Sbjct: 36 LDRRDIGLLTELVYGTIQRRDTLDYFLAPFV--KKGIDKLEDWVKVLLRLSVYQLVYLDR 93
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P AVV E V +AK G +VNG+LR + +P K N++ + LA
Sbjct: 94 IPDRAVVHEAVTIAKKRGHKGISGMVNGVLRSI----GREGVPDIK---NEKDPIKRLAL 146
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQ- 284
SHP W+V RW K G+E+ + N P+ ++R N K TR +++ L +
Sbjct: 147 ETSHPKWLVARWVKQFGEEDTRLMCEENLVSPAVTVRVNQTKA-TREEVISMLEADGIAA 205
Query: 285 VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 344
V ELS ++ + +K+G V ++ K+G QDES+ LV + G+ + D CA
Sbjct: 206 VKGELS---EDALIIKSG--QVFESKAFKQGYVTAQDESSMLVGRALGANSGERVADVCA 260
Query: 345 APGGKTLYMASCLSGQGLVYAIDINKGRLRIL-NETAKLHQVNSVIRTIHADLRTFADNS 403
APGGKT ++A ++ +G V A D++ +++++ + A+L S+I T AD R A+
Sbjct: 261 APGGKTTHIAEQMNNEGSVLAFDLHDHKVKLIRGQAARLDL--SIIDTQAADARKLAEKF 318
Query: 404 TVKC-DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLV 462
+ D++L+DAPCSG GV+ ++ D++W ++ D++ ++ +Q +L+A + L+K GG LV
Sbjct: 319 EPESFDRILVDAPCSGFGVIKRKPDIKWAKKEADIKAIQSIQQAILNAVAPLLKKGGTLV 378
Query: 463 YSTCSIDPEENEERVEAFLLRHPEFSIDP----------------ADGLV---PSDFVTK 503
YSTC++D +ENEE VEAFL HP F D G+V P DF
Sbjct: 379 YSTCTVDKDENEETVEAFLAEHPSFVKDEDLKNRLPKQVIDSKRFKSGMVTILPQDF-NS 437
Query: 504 HGFFFSDPIKH 514
GFF S +K
Sbjct: 438 DGFFISSLVKQ 448
>gi|404494920|ref|YP_006719026.1| 16S rRNA (5-methyl-C967)-methyltransferase [Geobacter
metallireducens GS-15]
gi|418067574|ref|ZP_12704913.1| sun protein [Geobacter metallireducens RCH3]
gi|78192548|gb|ABB30315.1| 16S rRNA (5-methyl-C967)-methyltransferase [Geobacter
metallireducens GS-15]
gi|373558572|gb|EHP84908.1| sun protein [Geobacter metallireducens RCH3]
Length = 446
Score = 224 bits (572), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 161/461 (34%), Positives = 243/461 (52%), Gaps = 35/461 (7%)
Query: 68 LMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRR 127
L+R++ AFA+ L ++R L T DR L +T++V G +R +
Sbjct: 14 LLRVERDRAFAEQL--------------LDRELSLGTLTGPDRGL--LTELVYGVLRRQG 57
Query: 128 YLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPG 186
LD L+ +E +L ILR+G Y++ LD +P A V+E+V LAK A+ P
Sbjct: 58 TLDFLVDAFAASRS--GKLERAILVILRLGLYQLFFLDRIPTSAAVNESVNLAK-AVAPR 114
Query: 187 AGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEA 246
A VN +LR+ ++ +SLP P G D A +A +SHP W+V +W + LG EA
Sbjct: 115 AAGFVNAVLRRAD--RERDSLPWPD-RGAD--PAAYIAVRHSHPRWLVEQWIEQLGIPEA 169
Query: 247 IKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFIRVKTGLQNV 306
+L V ++R N+ K TR + +L + E ++ +R+ +
Sbjct: 170 EELAVAMAEQAPLTIRVNTLK-TTREAFMEELAAAGITA--EPTVWAPHGVRILSRTAVT 226
Query: 307 IQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAI 366
G EGL VQDES+ L +DPQPG+ I+D CAAPGGK Y+A + +G V A
Sbjct: 227 TLPGF-AEGLFTVQDESSQLAAFFLDPQPGERILDVCAAPGGKATYLAQLMENRGEVLAC 285
Query: 367 DINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRA 426
DI+ +LR++ E A + +IRT+ D T D++LLDAPCSG GV+ +
Sbjct: 286 DISAKKLRLVAEAAARLGIG-IIRTMAGDA-TKPGAGEPPFDRILLDAPCSGFGVIRRNP 343
Query: 427 DLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPE 486
+ +W + +D+ L Q +L A + ++PGGVL+YSTCS E+E+ V+ FL RH +
Sbjct: 344 EGKWWKTPDDLARLAATQRNILAAVAPRLRPGGVLLYSTCSTMVAEDEDVVDDFLSRHED 403
Query: 487 FSIDPADGLVPSDF---VTKHGFFFSDPIKHSLDGAFAARL 524
F ++ + + P DF T G F S P +H +DG FAAR+
Sbjct: 404 FVLEDLNAISP-DFPGQFTGRGHFRSWPHRHGMDGFFAARI 443
>gi|121533700|ref|ZP_01665527.1| sun protein [Thermosinus carboxydivorans Nor1]
gi|121307691|gb|EAX48606.1| sun protein [Thermosinus carboxydivorans Nor1]
Length = 442
Score = 224 bits (571), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 148/423 (34%), Positives = 225/423 (53%), Gaps = 15/423 (3%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
+DL DRD R +T++V GT++ LD + L + + + P++ ILR+G Y+I L
Sbjct: 32 RDLTDRDRRFITELVYGTVKAGATLDWI--LSHYSSRPLDKIHPVIRNILRMGIYQIFFL 89
Query: 165 D-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARAL 223
+P A +E V+LA+ G VN +LR D P +R + +
Sbjct: 90 SRIPVSAACNEAVKLAQKYGHAGTVKFVNAVLRSAGRSPDKVVYP-----DRERDPEKYI 144
Query: 224 ATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKL 283
A Y HP W+VRRW G +L NN P SLR N+ K +RADL+ +L
Sbjct: 145 ALRYFHPEWLVRRWVARFGAAICERLCEANNETPPLSLRTNTLK-TSRADLLRRLA--GE 201
Query: 284 QVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCC 343
V E S E I + + L+ GL VQDES+ V V+ P+PG ++D C
Sbjct: 202 GVVCEPSAWAPEGILCHE-YPALSKLASLRAGLFQVQDESSMTVAHVLSPRPGDFVIDAC 260
Query: 344 AAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS 403
APGGK+ ++A+ + +G V A DI + +L ++ + A + S++ T D +
Sbjct: 261 GAPGGKSTHIAALMGNKGKVLATDIYEHKLALMRDNAVRLGI-SILETQLLDAVKLGELY 319
Query: 404 TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463
+ D+VL+DAPCSGLGVL ++ D RW + + + +L LQ +L +A+ +KPGG+LVY
Sbjct: 320 PGQADRVLVDAPCSGLGVLRRKPDSRWRKNEQMLTDLPRLQLAILASAAKCLKPGGILVY 379
Query: 464 STCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAAR 523
STC+ +PEEN E V++FL +PEF ++PA +P + + P +DG F AR
Sbjct: 380 STCTTEPEENGEVVKSFLATNPEFILEPAGRYLPVGRQEEMVQLW--PHADGVDGFFIAR 437
Query: 524 LVR 526
+VR
Sbjct: 438 MVR 440
>gi|317121758|ref|YP_004101761.1| sun protein [Thermaerobacter marianensis DSM 12885]
gi|315591738|gb|ADU51034.1| sun protein [Thermaerobacter marianensis DSM 12885]
Length = 511
Score = 224 bits (571), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 154/427 (36%), Positives = 223/427 (52%), Gaps = 19/427 (4%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L R+ L T++ G R + LD + K + ++P + LR+G Y++ LD
Sbjct: 95 LPARERALATELAYGVARRQGTLDWALSRFS--RKPPARLDPPVRAALRLGAYQLWYLDR 152
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P +A VDE+V L + A VN +LR + P ++ +R A LA
Sbjct: 153 IPAHAAVDESVNLVRRHGPAYAAGFVNAVLRAAA----RHGFPQGEVPPRERDLAGHLAL 208
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRAD-LVMQLNLLKLQ 284
+++HP W+V RW LG EEA +L+ NN P S R N RAD + L
Sbjct: 209 VHAHPRWLVERWLGRLGPEEAERLLEANNRVPPLSARVNR----LRADPRALAAALAARG 264
Query: 285 VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 344
V E L E +R+ G+ + +EG QDES+ L V V+DP+PG +VD A
Sbjct: 265 VAVEAGRFLPEALRLGHGVHPA-ELDAFQEGALTWQDESSMLAVHVLDPRPGDLVVDVAA 323
Query: 345 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNST 404
APGGK+ ++A + +G V A D + GRL + E A+ + I + D R +
Sbjct: 324 APGGKSTHIAERMGDRGRVVACDADPGRLEKVGEAARRLGLG-CIEPLALDGRKLPERLA 382
Query: 405 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464
+ D+VL D PCSGLGVL++R DLRW + +D+ L LQ ELL AA+ +KPGGVLVYS
Sbjct: 383 GQADRVLADVPCSGLGVLARRPDLRWRKTPDDLAALAELQGELLRAAAACLKPGGVLVYS 442
Query: 465 TCSIDPEENEERVEAFLLR-HPEFSIDPADGLVPS----DFVTKHGFFFSDPIKHSLDGA 519
TC+ +PEEN++ VE FL + F+ D +P+ + T G+ P +H +DG
Sbjct: 443 TCTTEPEENQQVVEGFLAQAGGAFTADDLRPWLPAALRDEPGTAQGWIQLWPHRHGVDGF 502
Query: 520 FAARLVR 526
F ARL R
Sbjct: 503 FIARLRR 509
>gi|258515525|ref|YP_003191747.1| sun protein [Desulfotomaculum acetoxidans DSM 771]
gi|257779230|gb|ACV63124.1| sun protein [Desulfotomaculum acetoxidans DSM 771]
Length = 452
Score = 224 bits (571), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 146/443 (32%), Positives = 236/443 (53%), Gaps = 21/443 (4%)
Query: 90 DNEMGYVERTLG--FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSME 147
D E Y L +D + D T++V GT+R +D ++ + SS
Sbjct: 18 DQEGAYANIALNQVLEQRDFNKLDRAFTTELVYGTLRALNTVDWVLAQFL--KHPLSSQT 75
Query: 148 PLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNS 206
+ ILR+G Y+++ + +P A +E +L+ G VNG+LR + + + +
Sbjct: 76 AWIRNILRLGTYQLLFMHRVPASAACNEAAKLSHKYGHKGQVKFVNGVLRNIA--RQHEN 133
Query: 207 LPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSR 266
+ P E + + ++ YSHP+WMV RW G+E+ I++ NN+ FS+R N+
Sbjct: 134 IEYPDCEKDPVSH---ISLRYSHPIWMVERWLNQFGKEKTIRICQSNNTPARFSIRTNTL 190
Query: 267 KGVTRADLVMQLNLLKLQ-VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAG 325
+ + R +L LLK Q + + + E + V+ G ++ + GL VQDES+
Sbjct: 191 Q-INRDNLA---ELLKQQGMIVDKTGFAPEGLNVE-GFTSLRNFPAFRNGLFQVQDESSI 245
Query: 326 LVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQV 385
L V P ++D CAAPGGKT ++A + +G + A DI +L ++ + + +
Sbjct: 246 LAGHAVKPAVNCRVIDACAAPGGKTTHLAQLMENKGEIIAADIYPHKLDLIEDNCQRLGI 305
Query: 386 NSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQD 445
V + I+ D RT ++ T D VL+DAPCSGLGVL +R D RW + E + L +Q
Sbjct: 306 KCV-KIINLDSRTLHNSYTGWADYVLVDAPCSGLGVLRRRPDARWRKEAEQIPALVKIQR 364
Query: 446 ELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKH- 504
E+L++A+L V+PGGVLVYSTC+I EEN E+V+ FLL H +F ++ L+PS+ ++
Sbjct: 365 EILESAALCVRPGGVLVYSTCTITEEENIEQVKYFLLTHLDFVLEDMSRLLPSEIDWQNT 424
Query: 505 ---GFFFSDPIKHSLDGAFAARL 524
G+ P H++DG F AR+
Sbjct: 425 LGKGYIQILPYTHNIDGFFIARM 447
>gi|376261164|ref|YP_005147884.1| ribosomal RNA small subunit methyltransferase RsmB/transcription
antitermination factor NusB [Clostridium sp. BNL1100]
gi|373945158|gb|AEY66079.1| ribosomal RNA small subunit methyltransferase RsmB/transcription
antitermination factor NusB [Clostridium sp. BNL1100]
Length = 449
Score = 224 bits (570), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 137/421 (32%), Positives = 233/421 (55%), Gaps = 19/421 (4%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPY 169
D T++V GT++W +D++I + + P + ILR+G Y+++ D +P
Sbjct: 41 DRSFATELVYGTVKWLLQIDYIIGK--YSSIKLKKLSPWIKNILRLGVYQLLHTDRIPVS 98
Query: 170 AVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQ-ARALATIYS 228
A + V LAK + VN +LR + KDN +P P D++ A L+ +YS
Sbjct: 99 AACNTAVDLAKRYGHQASSRFVNAVLRNISKNKDN--IPYP-----DKSDIASYLSILYS 151
Query: 229 HPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHE 288
HPVWMV++W G+E +L+ NN P F +R N+ K R L+ L+ K + E
Sbjct: 152 HPVWMVQKWIDLYGKEFTQELLRSNNQVPDFIIRTNTLK-TDRQTLLDALH--KEGIDAE 208
Query: 289 LSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGG 348
+++E + +K ++ K+G VQDES+ L ++DP+ G++++D C+APGG
Sbjct: 209 PGRYVEEAVILKNP-SSISNLDSFKKGYFQVQDESSMLAAKILDPKEGETVIDVCSAPGG 267
Query: 349 KTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCD 408
K +MA ++ +G V A DI + +L ++ ++ ++ + IH D +N K D
Sbjct: 268 KATHMAQLMNNKGTVIARDIYQHKLNLIEQSCCRLGIDIIKTEIH-DACNLDENLIGKAD 326
Query: 409 KVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSI 468
+VL+DAPCSGLG++ K+ D+++ R +++E+ LQ ++L AS +K GG ++YSTC+I
Sbjct: 327 RVLIDAPCSGLGIIRKKPDIKYARTENELKEITGLQQKILKIASKYLKVGGYMIYSTCTI 386
Query: 469 DPEENEERVEAFLLRHPEFSIDPADGLVPS--DF-VTKHGFFFSDPIKHSLDGAFAARLV 525
P+EN E V+ FL ++P F + L+P DF ++ G+ P + DG F +++
Sbjct: 387 QPQENLEIVQDFLAKNPNFKLTDFRELMPPALDFSSSEEGYIQLYPNINQTDGFFISKIK 446
Query: 526 R 526
R
Sbjct: 447 R 447
>gi|357040454|ref|ZP_09102241.1| sun protein [Desulfotomaculum gibsoniae DSM 7213]
gi|355356545|gb|EHG04331.1| sun protein [Desulfotomaculum gibsoniae DSM 7213]
Length = 466
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 148/422 (35%), Positives = 227/422 (53%), Gaps = 23/422 (5%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPY 169
D +T++V GT+R + LD L + ++ + + ILR+G Y+I+ +D +P
Sbjct: 42 DRAFITELVYGTLRTQNTLDW--ALSRYLRRSLPELTAAVRNILRLGTYQILFMDRVPDS 99
Query: 170 AVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSH 229
A V+E+ LA+ G VNG+LR LV K + P P D Q AL +SH
Sbjct: 100 AAVNESAILARRHGHEGIVKFVNGVLRNLVRGKKQLNYPDPN---EDPVQYIALR--HSH 154
Query: 230 PVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHEL 289
P W+VRRW G E L NN ++R N+ K + A+L+ +L L ++
Sbjct: 155 PAWLVRRWLNDFGFAETEALCAANNQPAPNTVRVNTLK-TSAAELIEKLATLGVKATR-- 211
Query: 290 SLHLDEFIRVKTGLQNVIQAGLL---KEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAP 346
++ LQ + G L KEGL QDES+ LV V P PG ++D +AP
Sbjct: 212 ----GQYAVDCLQLQGFVSLGGLAPFKEGLLQAQDESSILVGQAVRPAPGSRVLDVASAP 267
Query: 347 GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVK 406
GGK ++A + QG++ A+D+++ +++++ E + V +++ + AD R + T
Sbjct: 268 GGKATHLAQLMQNQGVIMALDVHEHKIKLIEENCRRLGVQ-IVQPVLADARQIPEKYTGW 326
Query: 407 CDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTC 466
D VL+DAPCSGLGVL +R D RW + E + L LQ ++L++A+ ++KPGGVLVYSTC
Sbjct: 327 ADYVLVDAPCSGLGVLRRRPDARWRKGEEQLAALAELQAQILESAAAVLKPGGVLVYSTC 386
Query: 467 SIDPEENEERVEAFLLRHPEFSIDPADGLVPS--DFVTK--HGFFFSDPIKHSLDGAFAA 522
+I EEN +V++FL +H +F + L+P D+ G+ P H LDG F A
Sbjct: 387 TITCEENLGQVKSFLHKHADFQWESLAELLPDSLDYTATMGRGYLQLLPHIHGLDGFFIA 446
Query: 523 RL 524
RL
Sbjct: 447 RL 448
>gi|414076371|ref|YP_006995689.1| ribosomal RNA small subunit methyltransferase B [Anabaena sp. 90]
gi|413969787|gb|AFW93876.1| ribosomal RNA small subunit methyltransferase B [Anabaena sp. 90]
Length = 446
Score = 223 bits (569), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 154/431 (35%), Positives = 224/431 (51%), Gaps = 38/431 (8%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI-VKLD 165
L D + RL+T++V G++R +R LD +I L K L IL +GFY++ +
Sbjct: 34 LPDNNRRLMTELVYGSVRRQRTLDAIIEQLA--TKKIQQQPKDLRTILHLGFYQLRYQER 91
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A V+ V LAK PG VNG+LR+ + L + +S PL E L
Sbjct: 92 IPASAAVNTTVELAKENGFPGLTGFVNGLLRQYLRLAEKSSEPLNLPEN----PVERLGI 147
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
+S P W++ W K LG EE KL W N P+ LR N +++ +L ++Q
Sbjct: 148 FHSFPNWIIEVWLKELGFEETEKLANWMNQTPTIDLRVN----------ILRSSLEEVQS 197
Query: 286 PHELS-------LHLDEFIRVKTGLQNVIQA-GLLKEGLCAVQDESAGLVVAVVDPQPGQ 337
E + HL + +R+ G IQ EG VQD SA LV ++DP PG
Sbjct: 198 AFESAGVLVKPIPHLPQALRL-IGHNGAIQNLPGFNEGWWTVQDSSAQLVGHLLDPLPGN 256
Query: 338 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVN-SVIRTIHADL 396
++D CAAPGGKT ++A + +G ++A D RLR L E A H++N I D
Sbjct: 257 VVIDVCAAPGGKTTHIAELMGDKGKIWACDQTASRLRKLKENA--HRLNLQSIEICAGDS 314
Query: 397 RT---FADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASL 453
R F D++ D+VL+DAPCSGLG + + AD RW + + +++L LQ ELL +
Sbjct: 315 RNLPQFYDSA----DRVLVDAPCSGLGTMHRHADARWRQTPDSVQKLSQLQKELLSHNAG 370
Query: 454 LVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIK 513
VK GGVLVY+TC++ P ENE+ + FL +P + I+P + +D T G+ P +
Sbjct: 371 FVKAGGVLVYATCTLHPAENEQVITEFLAANPHWQIEPHSFDLFND--TAPGWLKVWPHQ 428
Query: 514 HSLDGAFAARL 524
+DG F RL
Sbjct: 429 QDMDGFFMVRL 439
>gi|427736995|ref|YP_007056539.1| ribosomal RNA small subunit methyltransferase RsmB [Rivularia sp.
PCC 7116]
gi|427372036|gb|AFY55992.1| ribosomal RNA small subunit methyltransferase RsmB [Rivularia sp.
PCC 7116]
Length = 459
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 150/440 (34%), Positives = 225/440 (51%), Gaps = 31/440 (7%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQ-ILRIGFYE 160
R DL + + RLVT++V G++R +R LD +I L + S +PLLL+ IL +G Y+
Sbjct: 29 LRKVDLPNNERRLVTELVYGSVRRQRTLDAIIDKLARKK---SHQQPLLLRCILHLGLYQ 85
Query: 161 I-VKLDMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGND--- 216
+ + +P A V+ V+LAK G VNG+LR + L++ L + EG +
Sbjct: 86 LQFQERIPDSAAVNTTVQLAKDNGFSGLSGFVNGLLRSYIRLQEE----LQQKEGEETKT 141
Query: 217 ---------RAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSR- 266
Q+ L +YS P W+V W + G E KL W N P+ LR N
Sbjct: 142 NKIIPIKLPEKQSERLGILYSFPDWVVNIWVEQFGFSETEKLCEWMNQTPNIDLRVNQLC 201
Query: 267 KGVTRADLVMQLNLLKLQ-VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAG 325
+ + ++ + Q +P+ L + +R+ + EG VQD SA
Sbjct: 202 SSIEEVETALKNQGISSQRIPN-----LPQALRLLNSPGAIKNLPGFNEGWWTVQDSSAQ 256
Query: 326 LVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQV 385
LV +++PQP + I+D CAAPGGKT ++A + G +YA D + RLR L + + +
Sbjct: 257 LVSYLLNPQPHEVIIDACAAPGGKTTHIAELMGDTGQIYACDRTESRLRKLQQNTQRLNL 316
Query: 386 NSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQD 445
SV D R+ DKVLLD PCSGLG L + AD RW + ++++EL +LQ
Sbjct: 317 KSV-EVCLGDSRSLTQFEK-SADKVLLDVPCSGLGTLHRHADARWRQTPDNIKELCVLQA 374
Query: 446 ELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVP-SDFVTKH 504
ELL +S VK G LVYSTC++ P+ENE +++FL + + I D ++ T
Sbjct: 375 ELLLHSSTFVKDSGSLVYSTCTLHPDENEGAIKSFLESNSNWEIQSPDTYSAIHEYATSE 434
Query: 505 GFFFSDPIKHSLDGAFAARL 524
G+ P KH++DG F RL
Sbjct: 435 GWIKVLPHKHNMDGFFMVRL 454
>gi|312898700|ref|ZP_07758090.1| ribosomal RNA small subunit methyltransferase B [Megasphaera
micronuciformis F0359]
gi|310620619|gb|EFQ04189.1| ribosomal RNA small subunit methyltransferase B [Megasphaera
micronuciformis F0359]
Length = 441
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 138/421 (32%), Positives = 227/421 (53%), Gaps = 19/421 (4%)
Query: 109 DRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MP 167
DRD R T++V GT+R Y+D++I +L +K +S++P+ L +LR+G Y++ +D +P
Sbjct: 36 DRDRRFYTELVYGTLRSLNYVDYIIGILSSRKK--NSLDPVCLAVLRMGLYQLFFMDKVP 93
Query: 168 PYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIY 227
P A +E V+LA+ G VN +LR L+ L +P + N L+ +
Sbjct: 94 PSAACNEAVKLARRFGNEGMAKFVNALLRNS--LRQKERLAIPTFDENPVLH---LSLTW 148
Query: 228 SHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPH 287
W++ +W G++ + L + ++ P +RAN+ + + R L+ L+ + +P
Sbjct: 149 HQQSWLIEKWITEFGRDHTVTLCRYFDTVPELCIRANTER-IDREGLMKLLS--EKGIPC 205
Query: 288 ELSLHLDEFIRVKT--GLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAA 345
+ H + I + G+ + + + +GL +QDE + LV A+ DPQ I D CAA
Sbjct: 206 RPAEHAPDGIYAEKNPGIHKLTE---IADGLGLIQDEPSQLVAAIADPQEKTVIFDVCAA 262
Query: 346 PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTV 405
PGGKT ++A+ + VYA DI + +L+++ + + +V RT D + +
Sbjct: 263 PGGKTTHLATLGTKSSTVYAFDIYEHKLKLIEDNVNRLGLKNV-RTRLQDGTSVGEIYPE 321
Query: 406 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465
K D VL+DAPCSGLG+L + DLRW + +ED+ LQ ++L++A+ VKPGG LVYST
Sbjct: 322 KADCVLVDAPCSGLGILRHKPDLRWRKTVEDLTVFPPLQKKILESAAKCVKPGGTLVYST 381
Query: 466 CSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARLV 525
C+++ ENE+ V AF + H +F + P F + P LDG F A+L
Sbjct: 382 CTMNRAENEDIVNAFRISHKDFEVVPVGNAF--GFSKDSDYLSILPQDDGLDGFFIAKLR 439
Query: 526 R 526
R
Sbjct: 440 R 440
>gi|442805500|ref|YP_007373649.1| ribosomal RNA small subunit methyltransferase B [Clostridium
stercorarium subsp. stercorarium DSM 8532]
gi|442741350|gb|AGC69039.1| ribosomal RNA small subunit methyltransferase B [Clostridium
stercorarium subsp. stercorarium DSM 8532]
Length = 449
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 143/426 (33%), Positives = 230/426 (53%), Gaps = 19/426 (4%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
K+L+ RD +T++V GT+ + LD +I + M L+LQILR+G Y+I+ L
Sbjct: 33 KELNSRDRAFITELVYGTVTRKLTLDWIISHFSKIQ--LKKMSNLVLQILRMGTYQIMFL 90
Query: 165 D-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARAL 223
D +PP A + +V LAK + +G VN +LR + K+ S + + + L
Sbjct: 91 DRVPPSAACNTSVELAKRYAKQSSG-FVNAVLRNIARNKERISFE----DIDAPTVSEKL 145
Query: 224 ATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKL 283
+ YS P ++VR W G+ +L+ P FS+R N+ K T+ +V LN +
Sbjct: 146 SIKYSFPEYLVREWISVFGENFTEELLKAFLERPDFSVRINTLK-TTKESVVEDLNSHGI 204
Query: 284 Q-VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 342
+ +P +LDE + +K + ++ ++G VQDES+ +V ++DP+PG+ I+D
Sbjct: 205 ETLPGR---YLDEALYLKN-ISDISNLDAFQKGKITVQDESSMIVARILDPKPGEKILDT 260
Query: 343 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN 402
CAAPGGKT ++ + +G + A D+++ ++ ++NE AK V +I D +
Sbjct: 261 CAAPGGKTTHIGQLMQNRGHIDAWDVHEHKIALINENAKRLGV-EIINASQQDALYLLNE 319
Query: 403 STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLV 462
+ D+VL+DAPCSG G++ ++ D++W R+ ED+ L +Q ++L A VKPGGVLV
Sbjct: 320 AKGVYDRVLVDAPCSGTGIIRRKPDIKWKRKKEDLSNLVEIQKKILYNAGRYVKPGGVLV 379
Query: 463 YSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTK----HGFFFSDPIKHSLDG 518
YSTCS+D ENEE V+ FL + +F + L+P K G P DG
Sbjct: 380 YSTCSVDVRENEEVVKFFLAENGDFKRESVKELLPQALKEKAGVDEGMLRLYPHIDGTDG 439
Query: 519 AFAARL 524
F AR+
Sbjct: 440 FFIARM 445
>gi|374296871|ref|YP_005047062.1| ribosomal RNA small subunit methyltransferase RsmB/transcription
antitermination factor NusB [Clostridium clariflavum DSM
19732]
gi|359826365|gb|AEV69138.1| ribosomal RNA small subunit methyltransferase RsmB/transcription
antitermination factor NusB [Clostridium clariflavum DSM
19732]
Length = 450
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 136/429 (31%), Positives = 235/429 (54%), Gaps = 30/429 (6%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSS-----MEPLLLQILRIGFYEI 161
L + D +T++V GT++W+ +D++I + FSS + P +L ILR+G Y++
Sbjct: 37 LSNIDKAFITELVYGTLKWQLSIDYII-------EKFSSVKIKKLSPWILNILRLGVYQL 89
Query: 162 VKL-DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQ- 219
+ + +P A +E+V LAK + VN +LR + KD K+E DR +
Sbjct: 90 LYMTKIPESAACNESVNLAKRYGHSASSRYVNAVLRNITRSKD-------KIEYPDRNKD 142
Query: 220 -ARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQL 278
+ L+ YSHP WMV+ W G+ +L+ NN + ++R N+ K T +L QL
Sbjct: 143 LSAYLSIRYSHPEWMVKNWLNRFGESFTEELLKCNNENAPLTVRVNTLKTSTE-ELRDQL 201
Query: 279 NLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQS 338
+ P + I K ++ + ++GL VQDES+ +V V++P+P
Sbjct: 202 EKEGFE-PQPAKYVENALIINKPS--SITKMRAFEQGLFQVQDESSMIVAQVLNPKPKDL 258
Query: 339 IVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT 398
++D C+APGGK ++A + G V A D+++ +++++ E A + +I+ D +
Sbjct: 259 VIDVCSAPGGKATHIAELMQNTGQVIARDVHEHKIKLIEEAAIRLGI-GIIKAEVFDAQK 317
Query: 399 FADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPG 458
K D VL+DAPCSGLG++ ++ D++W R+ +D++E+ LQ+ +LD +S VKPG
Sbjct: 318 EDLKLINKADCVLVDAPCSGLGIIRRKPDIKWTRKEKDLDEIVKLQERILDTSSKYVKPG 377
Query: 459 GVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDF---VTKHGFFFSDPIKHS 515
GVL+YSTC+++P+ENEE V+ FL + +F ++ ++P D K G+ P
Sbjct: 378 GVLLYSTCTVEPKENEEMVKKFLQDNRDFELEDISEVLPKDLKKDTAKAGYIQLYPNIDG 437
Query: 516 LDGAFAARL 524
+DG F +++
Sbjct: 438 IDGFFISKM 446
>gi|427708448|ref|YP_007050825.1| sun protein [Nostoc sp. PCC 7107]
gi|427360953|gb|AFY43675.1| sun protein [Nostoc sp. PCC 7107]
Length = 449
Score = 223 bits (567), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 157/426 (36%), Positives = 222/426 (52%), Gaps = 15/426 (3%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
R L D D RL T++V G++R R LD LI + K P L IL +GFY++
Sbjct: 29 LRKFKLPDSDRRLATELVYGSVRRLRTLDALIDQIA--TKKSHQQPPELRTILHLGFYQL 86
Query: 162 -VKLDMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
+ +PP A V+ V LAK G VNG+LR+ + L + + PL KL N +
Sbjct: 87 RYQERIPPSAAVNTTVELAKENGFSGLTGFVNGLLRQYIRLTEKSPEPL-KLPENPMER- 144
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADL-VMQLN 279
L ++S P W+++ W +G E KL W N P+ LR N R +L ++
Sbjct: 145 --LGILHSFPDWIIQVWLDQIGLAETEKLCEWMNQTPTIDLRINP----LRTNLEQVETA 198
Query: 280 LLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSI 339
L + + HL + +R+ + + EG VQD SA LV ++DPQ G+ +
Sbjct: 199 LASAGIFTQRISHLPQALRLISSTGGIQNLPGFTEGWWVVQDASAQLVSHLLDPQAGEVV 258
Query: 340 VDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF 399
+D CAAPGGKT ++A + QG V+A D RLR L E A+ + S I D R
Sbjct: 259 IDTCAAPGGKTTHIAELMQDQGKVWAGDRTASRLRKLQENARRLNLQS-IEICAGDSRNL 317
Query: 400 ADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGG 459
+ D+VLLDAPCSGLG L + AD RW + E ++EL +LQ +LL S VK GG
Sbjct: 318 PQFYNIG-DRVLLDAPCSGLGTLHRHADARWRQTPESIQELSLLQKQLLSHTSNFVKNGG 376
Query: 460 VLVYSTCSIDPEENEERVEAFLLRHPEFSID-PADGLVPSDFVTKHGFFFSDPIKHSLDG 518
VLVY+TC++ ENE + FL ++PE+ I+ PA G S + T G+ P + +DG
Sbjct: 377 VLVYATCTLHLAENEAVISGFLAKNPEWQIEPPAVGSPYSVYSTPQGWLKVWPHRWDMDG 436
Query: 519 AFAARL 524
F RL
Sbjct: 437 FFMVRL 442
>gi|193212287|ref|YP_001998240.1| sun protein [Chlorobaculum parvum NCIB 8327]
gi|193085764|gb|ACF11040.1| sun protein [Chlorobaculum parvum NCIB 8327]
Length = 428
Score = 222 bits (566), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 150/424 (35%), Positives = 224/424 (52%), Gaps = 39/424 (9%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLIC-LLCHDEKTFSSMEPLLLQILRIGFYEIVKLD 165
L+ D L ++V GT+++R D +I HD ++ +L ILR+G Y+++ LD
Sbjct: 33 LERNDRALARELVAGTLKYRLQCDFVIERFYRHD---YAKAAEVLKHILRLGVYQLLHLD 89
Query: 166 -MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEG--NDRAQARA 222
+P A V+E+V+LA+ LVNG+LR L S LEG D +A+
Sbjct: 90 RVPRSAAVNESVKLARKFKGEHLAKLVNGLLRNL-------SKATIDLEGWTADLPEAKR 142
Query: 223 LATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLK 282
L+ +YS+P W+ RW G E A K++ + N P+ + R N + ++D L +
Sbjct: 143 LSILYSYPEWLTSRWIANYGAETAAKMLAYGNQPPATAYRIN----LLKSDPETLLATPE 198
Query: 283 LQVPHELS--LHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIV 340
L +S L F K+ + LL++G+ +VQ+ + GL + PQPG ++V
Sbjct: 199 LSDAKRVSDDEGLGSFFFSKSFDR---MEPLLRDGVVSVQNPTQGLACLLAAPQPGSTVV 255
Query: 341 DCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 400
D CAAPGGK+ +MA + +G + A+D ++ L A+ + ++I D TF
Sbjct: 256 DLCAAPGGKSTFMAELMQNRGRIIALDRTPAKVERLASNAQALGI-TIIEPREGDALTFE 314
Query: 401 DNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGV 460
V D VLLDAPC+G GVL +RA+LRW E + EL LQ +LD A+ L+ GGV
Sbjct: 315 LEGAV--DTVLLDAPCTGTGVLGRRAELRWRTTPEKLWELVELQAAMLDHAASLLPAGGV 372
Query: 461 LVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAF 520
LVY+TCS++PEENE++ EAFL RHPEF + + +P GF DG F
Sbjct: 373 LVYATCSVEPEENEQQAEAFLKRHPEFVAEQSRLTLPG---AHEGF----------DGGF 419
Query: 521 AARL 524
A R
Sbjct: 420 AVRF 423
>gi|428219720|ref|YP_007104185.1| sun protein [Pseudanabaena sp. PCC 7367]
gi|427991502|gb|AFY71757.1| sun protein [Pseudanabaena sp. PCC 7367]
Length = 493
Score = 222 bits (565), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 166/507 (32%), Positives = 239/507 (47%), Gaps = 66/507 (13%)
Query: 62 AVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGG 121
A+ A+R I GA+AD+ V++ L + DL D RL T++V G
Sbjct: 9 ALDALRF--IHKRGAYADM--------------AVDKILS-KNLDLGSSDRRLFTELVYG 51
Query: 122 TIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAK 180
+R +R L+ LI K + P LL L+IG Y+IV LD +P A V+ V LAK
Sbjct: 52 IVRRQRSLNALIDKFAR--KPATQQPPDLLMALQIGSYQIVYLDQVPDSAAVNTTVELAK 109
Query: 181 VALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEG-------------------------- 214
G LVN ILR + K+ +SL ++G
Sbjct: 110 QNKMSGLAGLVNAILRNISRAKEKDSLWATIVDGELIDRELNLNGVEQKEIKEEIAFDVS 169
Query: 215 -----------NDRAQA---RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFS 260
N Q R+L ++S P W+V W G +L W N P
Sbjct: 170 ISKSELTDSQTNKPPQTELVRSLGIMHSFPDWIVELWLAQFGLAATNQLCEWFNRSPHID 229
Query: 261 LRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQ 320
LR N + + R L+ L + + ++ IR+ G + + G VQ
Sbjct: 230 LRVNKLQ-IDRPQLLQAL--ADRGIAAQALDYIPNAIRLSQGAGKISNLPGFELGWWVVQ 286
Query: 321 DESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETA 380
D SA L ++DPQP ++I+D CAAPGGKT ++A + +G ++AID RL+ + +
Sbjct: 287 DASAQLAGFLLDPQPQETIIDACAAPGGKTTHLAELMDNRGKIWAIDRAASRLKKVKQNC 346
Query: 381 KLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEEL 440
QV +V +T DLR D D++LLD PCSGLG L + AD RW + E + EL
Sbjct: 347 DRLQVTNV-QTRAIDLREIEDWQDYG-DRLLLDVPCSGLGTLHRHADARWRQSPEQIVEL 404
Query: 441 KILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPS-D 499
LQ EL+ A+ VKP G++VYSTC++ P ENE V FL H + ++P + P+
Sbjct: 405 AQLQQELITKAATWVKPNGIMVYSTCTLHPAENEAIVTKFLAEHSHWQLEPPEQNNPAYS 464
Query: 500 FVTKHGFFFSDPIKHSLDGAFAARLVR 526
F+T+ G+ P H +DG F ARL R
Sbjct: 465 FITEQGWIKVLPHLHDMDGFFMARLRR 491
>gi|222054190|ref|YP_002536552.1| sun protein [Geobacter daltonii FRC-32]
gi|221563479|gb|ACM19451.1| sun protein [Geobacter daltonii FRC-32]
Length = 448
Score = 222 bits (565), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 154/423 (36%), Positives = 231/423 (54%), Gaps = 27/423 (6%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSS-----MEPLLLQILRIGFYEIVKLD 165
D L+T++V G +R + LDH+I + FSS +E +L +LRIG Y++ LD
Sbjct: 41 DRGLLTELVYGVLRRQATLDHII-------RRFSSQRLERLERSVLLLLRIGLYQMFYLD 93
Query: 166 -MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P A V+E V+LAKV L P A +N +LR +D+ S P ++ A LA
Sbjct: 94 RVPVSAAVNETVKLAKV-LVPRASGFINAVLRNADRERDHISYP-----DREKDPAAYLA 147
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQ 284
T+YSHPVW+ W LG +EA L P+ ++R N+ K TR L+ L+ +Q
Sbjct: 148 TVYSHPVWLAAAWIGQLGLDEAEMLARAMAEPPAITVRTNTLK-TTRQQLMEILSAEGVQ 206
Query: 285 VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 344
E IR+ +V + ++GL VQDES+ L + PQ G+ ++D CA
Sbjct: 207 C--ETGRFSPMAIRINLS-GSVSRLKSFRDGLFFVQDESSQLAAMFLGPQAGERVLDACA 263
Query: 345 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADL-RTFADNS 403
APGGK+ +A + +G + A D+ +L++++E A ++S IRT+ D R
Sbjct: 264 APGGKSTQLAQLMGDRGEILACDVIGRKLKLVDENAARLGISS-IRTVLLDTARPLKSLE 322
Query: 404 TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463
D++LLDAPCSGLGV+ + + +W + D+ +L Q LL+ + ++ GG L+Y
Sbjct: 323 RSPLDRILLDAPCSGLGVIRRNPEGKWWKSAADVIDLAKGQRALLENLAGHLRSGGSLLY 382
Query: 464 STCSIDPEENEERVEAFLLRHPEFSIDPADGLVP--SDFVTKHGFFFSDPIKHSLDGAFA 521
+TCS EENE +EAFL RH EF I+ L P ++ T GFF + P +H +DG FA
Sbjct: 383 ATCSTAVEENEAVIEAFLSRHDEFVIEDLRLLFPDLAELFTPAGFFRAWPHRHGMDGFFA 442
Query: 522 ARL 524
ARL
Sbjct: 443 ARL 445
>gi|397906023|ref|ZP_10506850.1| Ribosomal RNA small subunit methyltransferase B [Caloramator
australicus RC3]
gi|397160937|emb|CCJ34185.1| Ribosomal RNA small subunit methyltransferase B [Caloramator
australicus RC3]
Length = 446
Score = 222 bits (565), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 138/439 (31%), Positives = 233/439 (53%), Gaps = 39/439 (8%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
F+ +L D T+IV GT+RW+ +D+LI C +K + L +RIG Y+I
Sbjct: 31 FKKYNLSSLDRAFATEIVYGTLRWKLKIDYLIQKFC--KKDLKDLNVWALNCIRIGVYQI 88
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
+D +P +A V+++V L K+ P VNGILR ++ K + N++ +
Sbjct: 89 FLMDKVPEFAAVNQSVVLCKLK-APRLSGFVNGILRNIIRNKQEFDII------NEKDKT 141
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
+ L+ YSHP W + + KY ++ I LM NN P ++R N+ K ++ +L ++
Sbjct: 142 KFLSIKYSHPKWFIDYFIKYFDEKFLIDLMDANNQAPELTVRVNTLKS-SKENLKAKI-- 198
Query: 281 LKLQVPHELSLHLDEFIRVKTG-------LQNVIQAGLLKE---GLCAVQDESAGLVVAV 330
+ I+VK G ++ V Q ++E GL VQD+S+ + +
Sbjct: 199 ------------ISRGIKVKDGQLKESLIIEEVGQIEKMQEFLDGLFYVQDQSSMMASII 246
Query: 331 VDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIR 390
++P+PG+ ++D CAAPGGK +MA + G + A D+++ ++ ++NE +K + +I+
Sbjct: 247 LNPKPGEKVLDMCAAPGGKATHMAELMENTGEIIAFDVHEHKIDLINENSKRLGI-GIIK 305
Query: 391 TIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDA 450
+ D F DK+LLDAPCSGLG++ K+ ++RWN L+++++L +Q LL
Sbjct: 306 PMLKDATGFYKEFENNFDKILLDAPCSGLGLIRKKPEIRWNVSLKNIKDLTKIQSILLKN 365
Query: 451 ASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDF---VTKHGFF 507
AS VK G ++YSTC+I +ENE+ +E FL + F + LVP +F + +
Sbjct: 366 ASKYVKINGEILYSTCTITKDENEQIIEKFLNENTNFELVNISELVPIEFKNSLIDGTYL 425
Query: 508 FSDPIKHSLDGAFAARLVR 526
P ++ DG F +L R
Sbjct: 426 RLYPNINNTDGFFICKLKR 444
>gi|260892752|ref|YP_003238849.1| sun protein [Ammonifex degensii KC4]
gi|260864893|gb|ACX51999.1| sun protein [Ammonifex degensii KC4]
Length = 452
Score = 221 bits (564), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 141/418 (33%), Positives = 220/418 (52%), Gaps = 17/418 (4%)
Query: 114 LVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVV 172
L+T++ GT+R +D ++ ++ P + ILR+ Y+I+ LD +PP A
Sbjct: 42 LLTELCYGTLRRLNTIDWVLAKFI--KRPLCEQNPWIRNILRLAVYQILYLDRIPPAAAT 99
Query: 173 DENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVW 232
+E V LAK P VN +LR++V KDN + P + D LA YSHP W
Sbjct: 100 NEAVELAKKYAPPSMAGFVNAVLRRVVREKDNLTFPDIRTNPVDH-----LALKYSHPTW 154
Query: 233 MVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLH 292
+V W K G EE I++ NN + +LR N + TR +L+ +L + + +L+
Sbjct: 155 LVEMWLKEFGLEETIRICEANNQPAAATLRTNLLR-TTREELMERLRR-EADLRVSPTLY 212
Query: 293 LDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLY 352
E IRV+ G ++ +EGL +QDES+ L + P G ++D C APGGK +
Sbjct: 213 APEGIRVQ-GFFDLQHLPSYQEGLFYIQDESSMLAAHALAPASGSFVLDVCGAPGGKATH 271
Query: 353 MASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 412
+A + G + +DI RL ++ ++ + SV T+ AD R+ + D VL
Sbjct: 272 LAELMRDSGRILVVDIYAHRLALVVANSRRLGLKSV-ETLQADARSLDQQFAGQADYVLA 330
Query: 413 DAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEE 472
D PCSGLGVL ++ D+RW + E L LQ E+L++A+ V+PGGVL+Y TC++ E
Sbjct: 331 DVPCSGLGVLRRKPDIRWRKEPEIFPGLVTLQQEILESAAACVRPGGVLLYCTCTLGEAE 390
Query: 473 NEERVEAFLLRHPEFSIDPADGLVPS----DFVTKHGFFFSDPIKHSLDGAFAARLVR 526
N +++ FL RHP+F ++ +P + +HG+ P + +DG F ARL R
Sbjct: 391 NLGQIKRFLSRHPDFLLEDLRPFLPEALDREGTLRHGYIQIMPYQ-GMDGFFIARLRR 447
>gi|194333562|ref|YP_002015422.1| sun protein [Prosthecochloris aestuarii DSM 271]
gi|194311380|gb|ACF45775.1| sun protein [Prosthecochloris aestuarii DSM 271]
Length = 449
Score = 221 bits (562), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 150/426 (35%), Positives = 223/426 (52%), Gaps = 36/426 (8%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPY 169
D L T++V G +R+R+ +D +I H + P L+ ILRIG Y++ LD +P +
Sbjct: 44 DSALATELVNGILRFRQSIDSIITAFYHHK--LKKASPFLVNILRIGVYQLRYLDRIPDW 101
Query: 170 AVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSH 229
A V + V LA+ +VNG+LR + N + LE + Q A AT SH
Sbjct: 102 AAVSQCVDLARKYKGQHIARIVNGVLRSVAA---NPQKTVSSLEMQNPLQQLAAAT--SH 156
Query: 230 PVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHEL 289
P WM+ RW G++ ++ +NN+ P F LR N+ K A +LK +
Sbjct: 157 PEWMLERWMARYGEDRTRRVTSYNNTPPLFGLRINTLKTNKEA-------MLKAFADASV 209
Query: 290 SLHLDEFIRVKTGLQNVI-------QAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 342
EFI +TGL + + + GL VQ+ L ++DP+ G++++D
Sbjct: 210 -----EFI--ETGLPSFLLTKDFHRTEPFITLGLLTVQNPVQALPCLLLDPEEGETVLDM 262
Query: 343 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN 402
CAAPGGK+ ++A + G V A+D + R + E A + SVI TI +D R
Sbjct: 263 CAAPGGKSTFLAELMHNSGKVIAVDRYPNKCRTIRERASQMAI-SVITTIDSDARNVP-- 319
Query: 403 STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLV 462
+ + K+LLDAPCSG GVL++R +LRW E + +L LQ+ LL+ A+ L+ GGVLV
Sbjct: 320 AGISPAKILLDAPCSGTGVLARRPELRWKMNREKITQLVALQESLLNHAATLLPAGGVLV 379
Query: 463 YSTCSIDPEENEERVEAFLLRHPEFSID--PADGLVPSDFVTKH-GFFFSDPIKHS-LDG 518
YSTCSI+ EEN +++ FL +HPEF + P P ++ H G + + P H DG
Sbjct: 380 YSTCSIEEEENMLQIDRFLQKHPEFIAESHPRGLPGPCHELSGHPGAYLTLPGDHEGFDG 439
Query: 519 AFAARL 524
FA RL
Sbjct: 440 GFAQRL 445
>gi|365157094|ref|ZP_09353375.1| ribosomal RNA small subunit methyltransferase B [Bacillus smithii
7_3_47FAA]
gi|363625828|gb|EHL76839.1| ribosomal RNA small subunit methyltransferase B [Bacillus smithii
7_3_47FAA]
Length = 446
Score = 221 bits (562), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 149/423 (35%), Positives = 230/423 (54%), Gaps = 31/423 (7%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLIC-LLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
DL D L+T++ GTI+ + LD+ + L H K++ + +LR+ Y++V L
Sbjct: 38 DLTGPDAGLLTELTYGTIQRKFTLDYFLAPFLKHKLKSW------VRNLLRLSLYQMVYL 91
Query: 165 D-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEG-NDRAQARA 222
D +P AV+ E V +AK G +VNG+LR + LP L+ D + +
Sbjct: 92 DKVPDRAVIFEAVEIAKKRGHKGIAGMVNGVLRSI------QRKGLPALDAITDPVKRIS 145
Query: 223 LATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLK 282
+ T SHP W+V+RW + G E+ + N S P ++R N K RA++++ L
Sbjct: 146 IET--SHPEWLVKRWIRQFGLEKTKAMCETNLSVPVQTVRVNETKA-DRAEVLISLRQEG 202
Query: 283 LQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 342
E S L E IR+ G N + ++GL +QDES+ LV + +PG ++D
Sbjct: 203 FSA--EESPILPEAIRILKG--NAAHSSAFQKGLMTIQDESSMLVAHAMKLEPGMVVLDA 258
Query: 343 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETA---KLHQVNSVIRTIHADLRTF 399
CAAPGGKT +MA + G G VYA+D++ +++++ + A L ++S+ F
Sbjct: 259 CAAPGGKTTHMAEKMQGTGKVYALDLHPHKIKLIEDNAVRLGLENISSLPLDSRKGGEKF 318
Query: 400 ADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGG 459
S D++L+DAPCSGLGVL ++ D+++ ++ ED++ L+ +Q E+LDA + L+K GG
Sbjct: 319 PPQS---FDRILVDAPCSGLGVLRRKPDIKYVKKQEDLQSLQKIQLEILDAQAPLLKSGG 375
Query: 460 VLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPS--DFVTKHGFFFSDPIKHSLD 517
+LVYSTC++D EENE FL RHPEF +P D L + FV H F P D
Sbjct: 376 LLVYSTCTVDQEENEGTANRFLDRHPEFEPEPLDHLPEAVQPFVAGH-FLQIFPQDFGGD 434
Query: 518 GAF 520
G F
Sbjct: 435 GFF 437
>gi|138894694|ref|YP_001125147.1| 16S rRNA m(5)C 967 methyltransferase [Geobacillus
thermodenitrificans NG80-2]
gi|196247686|ref|ZP_03146388.1| sun protein [Geobacillus sp. G11MC16]
gi|134266207|gb|ABO66402.1| 16S rRNA m(5)C 967 methyltransferase [Geobacillus
thermodenitrificans NG80-2]
gi|196212470|gb|EDY07227.1| sun protein [Geobacillus sp. G11MC16]
Length = 444
Score = 220 bits (561), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 152/428 (35%), Positives = 233/428 (54%), Gaps = 31/428 (7%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
LD RD L+T+IV GTI+ R LD+ + + +E + +LR+ Y++V LD
Sbjct: 34 LDGRDAALLTEIVYGTIQRRDTLDYYLTPFLRKAR---RLEQWVRVLLRLTLYQMVYLDR 90
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEG-NDRAQARALA 224
+P +A + E V +AK G +LVNG+LR + LP L+ ND A+ A+A
Sbjct: 91 VPDHAAIFEAVEIAKRRGHRGIASLVNGVLRTI------GREGLPSLDAINDSAKRLAVA 144
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQ 284
T SHP W+VRRW + G EE ++ N P + R N RA + L L +
Sbjct: 145 T--SHPEWLVRRWIEQYGPEETARMCETNLRPPQSTARVNR----MRATVEEALERLGSE 198
Query: 285 -VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCC 343
V L E IR + G N G +QDES+ LV +DP G+ ++DCC
Sbjct: 199 GVKAVRGLLAPEAIRAENG--NFAHTEAFHSGWLTIQDESSMLVARALDPAAGERVLDCC 256
Query: 344 AAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-N 402
AAPGGKT ++A + G+G V A+DI++ +++++ + A+ +++ IRT+ D R +
Sbjct: 257 AAPGGKTTHIAERMDGRGEVVAVDIHEHKVKLIEQQAQRLGLDN-IRTLALDSRRLGEWF 315
Query: 403 STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLV 462
+ D++L+DAPC+G GV+ ++ ++++ + +D+ L +Q +L AA+ L+K GG LV
Sbjct: 316 APESFDRILVDAPCTGFGVIRRKPEIKYTKGNDDVAALVEIQQAILRAAAPLLKKGGTLV 375
Query: 463 YSTCSIDPEENEERVEAFLLRHPEFSIDP------ADGLVPSDFVTKHGFFFSDPIKHSL 516
YSTC+I+ EENEE + FL HP+FS+D D + P +V K G P
Sbjct: 376 YSTCTIEREENEEAIARFLADHPDFSLDDRLVERLPDAVRP--YVQK-GMLQLLPHYFDS 432
Query: 517 DGAFAARL 524
DG F ARL
Sbjct: 433 DGFFIARL 440
>gi|297617049|ref|YP_003702208.1| sun protein [Syntrophothermus lipocalidus DSM 12680]
gi|297144886|gb|ADI01643.1| sun protein [Syntrophothermus lipocalidus DSM 12680]
Length = 460
Score = 220 bits (560), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 161/475 (33%), Positives = 241/475 (50%), Gaps = 35/475 (7%)
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVG 120
R V+ L R++ GA+A+L V+R L R +D + LVT++V
Sbjct: 12 REVALNLLYRVEHKGAYANLA--------------VDRELD-RYED-NGSQHALVTELVN 55
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLA 179
GT+R R++LD ++ L K P L +ILR+ Y+++ +D +P YAVV+E V LA
Sbjct: 56 GTVRMRKHLDWVLNLFL--SKPIQKQNPWLREILRMSVYQLLFMDNVPEYAVVNEAVGLA 113
Query: 180 KVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTK 239
L G +VNG+LR ++ ++ +P P + N L+ YSHP WMV RW +
Sbjct: 114 GRKLDRGLSAVVNGVLRNVI--RNRGEIPYPDMYQN---PVEYLSVYYSHPEWMVARWVE 168
Query: 240 YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFIRV 299
G + A +L+ NN P +LR N K V R +L L + LS + V
Sbjct: 169 RYGLKGACQLLEHNNVRPRVALRTNLLK-VDREELFRSLTDEGCRC--TLSCLTPWGVWV 225
Query: 300 KTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSG 359
+ + + + +EG VQD+++ LV A P+ GQ + D A GGKT ++A +
Sbjct: 226 EETGKPLRKLHSYREGWFYVQDDASMLVSAACAPEAGQVVYDLAAGVGGKTSHLAELMGN 285
Query: 360 QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGL 419
QG++ A++I ++ IL E + + +++ D + D VLLDAPCSGL
Sbjct: 286 QGIIRAVEILPKKVEILKENIRRLGI-TIVDIWTGDALGPLAPGWGEGDVVLLDAPCSGL 344
Query: 420 GVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEA 479
GVL +R+D RW + +D+ L LQ LL + LV+PGGVLVYSTC+++PEENEE ++
Sbjct: 345 GVLRRRSDARWRKSEKDITVLSELQKRLLKRGAQLVRPGGVLVYSTCTLEPEENEEVIDW 404
Query: 480 FLLRHPEFSIDPADG------LVPSDF-VTKHGFFFSDPIKHSLDGAFAARLVRA 527
FL F +D P D G P ++ DG F ARL R
Sbjct: 405 FLGEETGFVLDDLSQPLRFFPFSPEDAKAASRGMLVLFPPRYGTDGMFIARLRRT 459
>gi|78042686|ref|YP_360313.1| sun protein [Carboxydothermus hydrogenoformans Z-2901]
gi|77994801|gb|ABB13700.1| sun protein [Carboxydothermus hydrogenoformans Z-2901]
Length = 440
Score = 219 bits (559), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 130/385 (33%), Positives = 218/385 (56%), Gaps = 26/385 (6%)
Query: 108 DDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-M 166
+D+D V ++ G ++ + LD++ L K S + P ++ +R+G Y++ LD +
Sbjct: 36 EDKDF--VVELTYGVLKQLKLLDYMAGKLL---KKRSKLPPFVINAIRVGLYQLYFLDKV 90
Query: 167 PPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATI 226
P YA ++E V K R G +VNG+LR + ++ + K++ +D + A+A
Sbjct: 91 PTYAAINETVEAVKRNYR-GFTGVVNGVLRNFIRRREE----ITKIDVSDEVEYLAIA-- 143
Query: 227 YSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRA--DLVMQLNLLKLQ 284
YSHP WMV+RW G + ++++ +NN P+ +LR N+ K +A DL+ + N+ Q
Sbjct: 144 YSHPEWMVKRWLNQYGYTKTVEILKYNNHQPNLTLRINTLKISPKAYCDLLNEKNINFKQ 203
Query: 285 VPH--ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 342
+P+ E + LD K G++ + EGL +QD + + +++P+P +D
Sbjct: 204 LPYLPEGVVILD-----KVGVKELPG---YDEGLFYIQDTGSMFIAYLINPEPNSVGIDA 255
Query: 343 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN 402
CAAPGGK+ ++A + +G++YA D++ GRL+++ E A +N +IR + D
Sbjct: 256 CAAPGGKSTHLAQLMGNKGIIYAFDVHPGRLKLIEENAHRLGIN-IIRCLLGDATRLKLP 314
Query: 403 STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLV 462
V + +L D PCSG GVL+++ D RW + E++ +L Q E+L S L+ P G+LV
Sbjct: 315 DGVNPNWILADVPCSGTGVLARKPDARWQKSEEEIIKLSQYQLEILTNLSKLLPPEGILV 374
Query: 463 YSTCSIDPEENEERVEAFLLRHPEF 487
YSTCSI+PEENE VE FL ++P F
Sbjct: 375 YSTCSIEPEENEGVVENFLRKNPNF 399
>gi|218961232|ref|YP_001741007.1| putative 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Candidatus
Cloacamonas acidaminovorans]
gi|167729889|emb|CAO80801.1| putative 16S rRNA m5C967
methyltransferase,S-adenosyl-L-methionine-dependent
[Candidatus Cloacamonas acidaminovorans str. Evry]
Length = 438
Score = 219 bits (558), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 141/436 (32%), Positives = 234/436 (53%), Gaps = 23/436 (5%)
Query: 95 YVERTLGFRTKDLDD--RDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQ 152
Y + L R K L + D L ++V G I+ LD+++ D+K ++ + +
Sbjct: 20 YSDTLLHQRAKKLKNAGEDPALFYNLVKGVIKLYLKLDYILQQYV-DKKKYTDTDIKIKV 78
Query: 153 ILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPK 211
+L +G Y+++ L+ +P YA V+E V LAK P + VN +LR N L P+
Sbjct: 79 LLYMGLYQLLYLNSIPDYAAVNETVELAKTLFNPQVADFVNAVLR--------NYLRNPE 130
Query: 212 LEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTR 271
+ + R +A +S P ++++W G+E L ++ N +P +R NS T
Sbjct: 131 VSYPNEPALR-IAYEHSFPPELIKQWLDLWGEENTEYLAMFFNENPELHIRVNST-ATTP 188
Query: 272 ADLVMQLNLLKLQV-PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAV 330
L + + P + S + F +T V++ EG +VQD SA L+V +
Sbjct: 189 EKLKAYFAKRNIVITPSQASPMM--FHTAQTA--EVLEDVAFSEGYFSVQDTSAALIVEL 244
Query: 331 VDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIR 390
+DPQ +S++D AAPGGK Y+A + G V A+D ++++L + A Q+ + I+
Sbjct: 245 LDPQKEESVLDLFAAPGGKCSYIAERMDNTGEVIAVDKIPSKMKLLKQAANRLQLTN-IK 303
Query: 391 TIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDA 450
+ D + + +VL+D PCSG GV +++DLRW +++ EL LQ++ LD
Sbjct: 304 MVVTDAFKYGPVAPA-FHRVLVDVPCSGWGVFGRKSDLRWQAH-QNIPELIKLQEKALDY 361
Query: 451 ASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSD 510
A+ V PGG LVYSTC+++P+ENE+++ AFL ++ F + PAD +P + T G+ +
Sbjct: 362 AANFVTPGGFLVYSTCTMNPKENEDQISAFLKKNRNFELIPADAFIPERY-TSAGYLKTI 420
Query: 511 PIKHSLDGAFAARLVR 526
P KH++DGAFAA+L R
Sbjct: 421 PFKHNMDGAFAAKLQR 436
>gi|392394789|ref|YP_006431391.1| ribosomal RNA small subunit methyltransferase RsmB
[Desulfitobacterium dehalogenans ATCC 51507]
gi|390525867|gb|AFM01598.1| ribosomal RNA small subunit methyltransferase RsmB
[Desulfitobacterium dehalogenans ATCC 51507]
Length = 453
Score = 219 bits (557), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 163/483 (33%), Positives = 251/483 (51%), Gaps = 54/483 (11%)
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDD-RDLRLVTDIV 119
RA++ L RI+ A+A+L+ +K DL+D R+ +L T +V
Sbjct: 7 RALAVQILQRIEEEKAYANLVMQKS------------------LHDLNDPRERQLTTLLV 48
Query: 120 GGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPPYAV-VDENVRL 178
GT++ R LD+ L H K S + + ILRI ++I+ L P AV ++E V L
Sbjct: 49 NGTLKNRLTLDY--ALRRHLRKPLSQLPHEVRWILRISTFQILYLSRIPEAVAINEGVEL 106
Query: 179 AKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWT 238
K + +LVN +LR++ + S P +R R L+ YSHP WMV+RW
Sbjct: 107 TK-KHQGKYTSLVNSVLRRVFESSWDISWP-----SKEREPIRYLSLRYSHPEWMVKRWL 160
Query: 239 KYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLN------LLKLQVPHELSLH 292
K G + L NN +R N+ K ++R L +L L +VP SL
Sbjct: 161 KRYGMTDTEALCQANNEPAPVWIRTNTLK-ISREGLQERLEREGVKVTLGERVPE--SLV 217
Query: 293 LDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLY 352
++EF ++ + +EGL VQDES+ L+ V++PQ GQ ++D C APGGKT +
Sbjct: 218 IEEF-------GSLDKLPSFQEGLFTVQDESSQLIAHVLNPQAGQKVLDACGAPGGKTTH 270
Query: 353 MASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 412
+A + +G + A DI+ +++++ + + + ++I D R A KVL+
Sbjct: 271 LAQRMENRGEILAFDIHPHKVKLIEDLSARLGI-TIIHPQAGDARELAGVEDSSYHKVLV 329
Query: 413 DAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEE 472
DAPCSGLGV+ +RAD+RWN+ E+++ L LQ LL+ A+ V GG LVYSTC+I+PEE
Sbjct: 330 DAPCSGLGVIRRRADMRWNKEEEEIKALPELQLALLERAAQCVALGGELVYSTCTIEPEE 389
Query: 473 NEERVEAFLLRHPEFS-IDPADGLVPSDFVTKH-------GFFFSDPIKHSLDGAFAARL 524
N E V+AF ++PEF+ ++ A+ P ++ GF P K +DG F A+
Sbjct: 390 NFEVVKAFRAKYPEFTPVNLAEDF-PYSLKSEQDIKQAAKGFLQILPHKQGMDGFFLAKF 448
Query: 525 VRA 527
R
Sbjct: 449 RRG 451
>gi|326203177|ref|ZP_08193043.1| sun protein [Clostridium papyrosolvens DSM 2782]
gi|325986823|gb|EGD47653.1| sun protein [Clostridium papyrosolvens DSM 2782]
Length = 467
Score = 219 bits (557), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 135/434 (31%), Positives = 239/434 (55%), Gaps = 26/434 (5%)
Query: 104 TKDLDDRDLR-----LVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGF 158
+ LD+ LR T++V GT++W +D++I + + P + +LR+G
Sbjct: 47 NRHLDNDKLREIDRSFATELVYGTVKWLLQIDYIIG--KYSSVKLKKLSPWIKNVLRLGV 104
Query: 159 YEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDR 217
Y+++ D +P A + V LAK + VN +LR + K+ +++P P D+
Sbjct: 105 YQLLHTDRIPVSAACNTAVELAKRYGHQASSRFVNAVLRNIS--KNIDNIPYP-----DK 157
Query: 218 AQ-ARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVM 276
+ A L+ YSHPVWMV++W + G+E +L+ NN P F +R N+ K D
Sbjct: 158 SDIASYLSIFYSHPVWMVQKWIELYGKEFTEELLKSNNQVPDFIIRTNTLK----TDRQT 213
Query: 277 QLNLL-KLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQP 335
L+LL K + E +++E + +K ++ K+G VQDES+ L ++DP+
Sbjct: 214 LLDLLHKEGINAEPGRYIEEAVILKNP-SSISNLETFKKGYFQVQDESSMLAGKILDPKE 272
Query: 336 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHAD 395
G++++D C+APGGK ++A ++ G V A DI + +L ++ ++ + ++ + IH D
Sbjct: 273 GETVIDVCSAPGGKATHIAQIMNNNGTVLARDIYEHKLNLIEQSCRRLGIDIIKTEIH-D 331
Query: 396 LRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLV 455
+N K D+VL+DAPCSGLG++ K+ D++++R +++E+ LQ ++L+ A+ +
Sbjct: 332 ACDIDENLIGKADRVLIDAPCSGLGIIRKKPDIKYSRTENELKEITDLQQKILNIAARYL 391
Query: 456 KPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDF---VTKHGFFFSDPI 512
K GG L+YSTC+I P+EN E V+ FL ++ F + L+PS ++ G+ P
Sbjct: 392 KVGGYLIYSTCTIQPQENLEIVQDFLAKNAGFKLSGFRELMPSALDISSSEEGYIQLYPN 451
Query: 513 KHSLDGAFAARLVR 526
+ DG F +++ R
Sbjct: 452 INQTDGFFISKIKR 465
>gi|320352726|ref|YP_004194065.1| sun protein [Desulfobulbus propionicus DSM 2032]
gi|320121228|gb|ADW16774.1| sun protein [Desulfobulbus propionicus DSM 2032]
Length = 450
Score = 218 bits (556), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 149/434 (34%), Positives = 220/434 (50%), Gaps = 34/434 (7%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
+ L D D LV ++ G +R + YLDH+ L + M+P L LRIG Y+++ L
Sbjct: 35 EQLPDIDRGLVKTLIYGVLRQKEYLDHI--LRTFAKHPLRKMKPRTLMTLRIGVYQLLFL 92
Query: 165 D-MPPYAVVDENVRLAKVALRPG-AGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARA 222
+P A V+ V K A +P VNGILR + + LP P+ +A
Sbjct: 93 SRIPESAAVNATVNTLKAASQPAWLIGFVNGILRAVA--RQRTQLPTPE------QMTQA 144
Query: 223 LATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSR-------KGVTRADLV 275
I +HP+W+V RW G+ A + NN +P +LR N R K + +
Sbjct: 145 EPPILNHPIWLVDRWRAEFGEATARAICACNNIEPPLTLRVNRRQTSRPLLKALLEKSGI 204
Query: 276 MQLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQP 335
M N V +L +D F L ++G VQDE+A L + P P
Sbjct: 205 MARNGFFSPV----ALIIDTFPGAVAALPGY------QQGHFQVQDEAAQLASLLTGPLP 254
Query: 336 GQS-IVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHA 394
+ I+D CA GGKT ++A L G + A++ + R R+L + + N+ + A
Sbjct: 255 ARCRILDGCAGLGGKTSHLAEMLPSDGAIVAVEPDSRRYRLLRDNLRRLGHNAQALPVRA 314
Query: 395 DLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLL 454
DLR +A D +L+DAPCSG GV+ ++ D+RWNR+ ED+ + Q LL+ A+ L
Sbjct: 315 DLRAYAATRPQPFDAILIDAPCSGTGVIRRQPDIRWNRQPEDLTPYQQTQVHLLEIAATL 374
Query: 455 VKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSD---FVTKHGFFFSDP 511
+KPGGVLVY+TCS++PEEN E V F+ R P F+++ A +P + V GFF +P
Sbjct: 375 LKPGGVLVYATCSLEPEENRETVRLFIERCPCFALEHAAAFLPENARRLVNAAGFFQPNP 434
Query: 512 IKHSLDGAFAARLV 525
+DG FAARL+
Sbjct: 435 -ADGMDGFFAARLI 447
>gi|298492855|ref|YP_003723032.1| sun protein ['Nostoc azollae' 0708]
gi|298234773|gb|ADI65909.1| sun protein ['Nostoc azollae' 0708]
Length = 446
Score = 218 bits (556), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 146/422 (34%), Positives = 219/422 (51%), Gaps = 20/422 (4%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI-VKLD 165
L D D RL+T++V G++R +R LD LI L K P L IL +GFY++ +
Sbjct: 34 LPDNDRRLMTELVYGSVRRQRTLDTLIDKLA--TKKAHQQPPELRTILHLGFYQLRYQEK 91
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A V+ V LAK VNG+LR+ + L +++S PL KL N L
Sbjct: 92 IPVSAAVNTTVELAKENGFSSLTGFVNGLLRQYLRLIESSSEPL-KLPENP---VERLGI 147
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANS-RKGVTRADLVMQ-LNLLKL 283
++S P W++ W + LG +E +L W N P+ LR N R + + + + +L
Sbjct: 148 LHSFPDWIIEVWLEQLGLKETERLCAWMNKTPTIDLRVNILRSSLEKVESAFKSAGVLVR 207
Query: 284 QVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCC 343
+P+ L + +R+ + + +EG VQD SA LV ++DP+PG ++D C
Sbjct: 208 PIPY-----LPQGLRLISSTGPIKNLPGFREGWWTVQDSSAQLVSHLLDPKPGNVVIDVC 262
Query: 344 AAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS 403
AAPGGKT ++ + +G ++A D RLR L E + + S I D R +
Sbjct: 263 AAPGGKTTHIGELMGDKGKIWACDQTASRLRRLKENVQRLHLES-IEICTGDSRNLTQFN 321
Query: 404 TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463
+ D VLLDAPCSGLG + + AD RW + ++EL LQ EL+ + +K GGVLVY
Sbjct: 322 NI-ADCVLLDAPCSGLGTMHRHADARWRQTPSSVQELSQLQKELISHTANFIKVGGVLVY 380
Query: 464 STCSIDPEENEERVEAFLLRHPEFSID-PADGLVPSDFVTKHGFFFSDPIKHSLDGAFAA 522
+TC++ P ENEE + FL +P + I+ P LV + G+ P + +DG F
Sbjct: 381 ATCTLHPMENEEVISQFLAVNPHWQIESPGSDLVD---IASPGWLKVWPHQRDMDGFFMV 437
Query: 523 RL 524
RL
Sbjct: 438 RL 439
>gi|399048081|ref|ZP_10739811.1| ribosomal RNA small subunit methyltransferase RsmB [Brevibacillus
sp. CF112]
gi|398053995|gb|EJL46141.1| ribosomal RNA small subunit methyltransferase RsmB [Brevibacillus
sp. CF112]
Length = 448
Score = 218 bits (556), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 139/381 (36%), Positives = 214/381 (56%), Gaps = 17/381 (4%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPY 169
D LVT++V GTI+ + LDH++ ++K ++ + +LR+ Y+I LD +P
Sbjct: 41 DTGLVTELVYGTIQRKLTLDHVLSHFVGNKK----LQTWVRNLLRLSLYQIRFLDRIPER 96
Query: 170 AVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSH 229
A V E V +AK G ++VNG+LR VL + + LPK DRA +A +SH
Sbjct: 97 AAVHEAVEMAKRRGHQGIASMVNGVLRN-VLRQPDVWERLPK---GDRATQ--IAVEHSH 150
Query: 230 PVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHEL 289
P W+VR+W G+ I + NN P S+R NS K T A ++ L +
Sbjct: 151 PEWLVRQWLAVYGEATTIAICEANNRHPHSSIRVNSLK--TSASELLD-KLAAEETAARQ 207
Query: 290 SLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGK 349
S + I V+ G + + L +EG +QDES+ LV + +PG ++D CAAPGGK
Sbjct: 208 SALSPQAILVEGG--HAAGSRLFREGYFTIQDESSMLVAPALAAKPGMRVLDACAAPGGK 265
Query: 350 TLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDK 409
T ++A + +G + A D++ + ++ +TAK + S+I I +D D D+
Sbjct: 266 TTHIAELMENRGHIVACDLHPHKRDLIAQTAKRLGI-SIIEPITSDALDLPDRGLGTFDR 324
Query: 410 VLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSID 469
+LLDAPCSG GV+ ++ DL+WN+ ED+ + LQ ELL A + ++ GVLVYSTC+I+
Sbjct: 325 ILLDAPCSGFGVIRRKPDLKWNKTPEDVRAIAQLQYELLKALAPMLAADGVLVYSTCTIE 384
Query: 470 PEENEERVEAFLLRHPEFSID 490
PEEN++ V+ F+ HPEF +D
Sbjct: 385 PEENQKIVQRFVKEHPEFVLD 405
>gi|345021918|ref|ZP_08785531.1| hypothetical protein OTW25_11359 [Ornithinibacillus scapharcae
TW25]
Length = 448
Score = 218 bits (556), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 140/434 (32%), Positives = 245/434 (56%), Gaps = 27/434 (6%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
++ + +D L+T+IV GTI+ + LD+ I + +K +EP + +LR+ Y++
Sbjct: 32 IKSNKISPKDEGLLTEIVYGTIQRKITLDYFIDYYLNSKK---KIEPWVRMLLRMSIYQM 88
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLP-LPKLEGNDRAQ 219
LD +P +A+ E V +AK G +LVNG+LR + N LP + K++ D Q
Sbjct: 89 NYLDKVPDHAIFHEAVEIAKQRGHKGVASLVNGMLRTI----QRNGLPDIQKIQ--DPVQ 142
Query: 220 ARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLN 279
++ T SHP W+V+RW + G E ++ N + + S+R K ++R D + +LN
Sbjct: 143 RLSVET--SHPEWLVKRWIDHYGYETTKEMCEANLTTKAMSVRIQPLK-ISRKDAMERLN 199
Query: 280 LLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSI 339
+V S+ ++ I + G N++++ L ++GL +QD+S+ LV ++D G +
Sbjct: 200 NEGYEVS--ASIFSEQGIIINNG--NILKSSLFEDGLVTIQDQSSMLVGELLDANAGDVV 255
Query: 340 VDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF 399
+D C+APGGK ++A + +G++ A D++K +++++NE A + S+I AD R
Sbjct: 256 LDACSAPGGKATHIAEKMGNKGVIRAHDLHKKKIKLINEKANALDL-SIIEAEAADARNL 314
Query: 400 ADNSTVKC-DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPG 458
++ + D++L+DAPCSGLGV+ + D+++N++ D+E L +Q ++L + L+K
Sbjct: 315 GEHYQNETFDRILVDAPCSGLGVMRGKPDIKYNKQERDIERLSEIQKDILTTVAPLLKIE 374
Query: 459 GVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPA------DGLVPSDFVTKHGFFFSDPI 512
G L+YSTC++DP ENE V+AFL H ++ ID + L S V+++G P
Sbjct: 375 GKLLYSTCTVDPIENEAVVKAFLAEHEDYQIDKQFFEELPNELKNSIGVSEYGLQLF-PQ 433
Query: 513 KHSLDGAFAARLVR 526
DG F RL+R
Sbjct: 434 SFETDGFFLTRLIR 447
>gi|350270717|ref|YP_004882025.1| rRNA methyltransferase [Oscillibacter valericigenes Sjm18-20]
gi|348595559|dbj|BAK99519.1| rRNA methyltransferase [Oscillibacter valericigenes Sjm18-20]
Length = 445
Score = 218 bits (556), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 151/428 (35%), Positives = 223/428 (52%), Gaps = 31/428 (7%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L D L T IV G ++ R LD + C + ++P L ILRIG Y+I+ LD
Sbjct: 34 LSGADAALATRIVYGVLQNRALLDFYLGAYC--SQKVGHLQPPLADILRIGAYQILFLDK 91
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A V+E+V LAK R A LVN +LRK+ L N LP + D AQ L+
Sbjct: 92 VPDRAAVNESVELAKKKGRGAASGLVNAVLRKVSL----NKAQLPPIPARDEAQY--LSI 145
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQ- 284
YSHP W+V+R LG+EE + +N +++ N+ K T ADL+ QL +
Sbjct: 146 RYSHPKWLVKRLLTLLGREETEAFLAADNGVAPLTVQVNTLK-TTAADLIAQLTAAGVTA 204
Query: 285 -----VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSI 339
VP L L T ++ + G VQD +A LV + P+ GQ +
Sbjct: 205 SAHPWVPDCLEL---------TASGDLTALDAFRSGAFFVQDPAAKLVSLIAAPKKGQRV 255
Query: 340 VDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRL-RILNETAKLHQVNSVIRTIHADLRT 398
+D CAAPGGK+ A + +G ++A D+++ +L RI + +L S I+T AD
Sbjct: 256 IDVCAAPGGKSFGAAVAMGDEGEIFACDLHEKKLGRIRDGAVRLSL--SSIQTFAADGTV 313
Query: 399 FADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPG 458
F + D VL+DAPCSGLG++ K+ D+R+ + +D+ L + Q +L+ + VKPG
Sbjct: 314 FRPDWADSADVVLVDAPCSGLGIIRKKPDVRY-KSPDDLFTLTVAQSAILENTARYVKPG 372
Query: 459 GVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDG 518
G L+YSTC+I PEEN + V+ FL +PEF+ + +P+ + G P +H DG
Sbjct: 373 GALIYSTCTILPEENAQVVDGFLSGNPEFTRETF--TLPAPVGEQPGELTLWPHRHGTDG 430
Query: 519 AFAARLVR 526
+ RL R
Sbjct: 431 FYICRLRR 438
>gi|408418942|ref|YP_006760356.1| ribosomal RNA small subunit methyltransferase B RsmB [Desulfobacula
toluolica Tol2]
gi|405106155|emb|CCK79652.1| RsmB: ribosomal RNA small subunit methyltransferase B
[Desulfobacula toluolica Tol2]
Length = 452
Score = 218 bits (555), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 139/423 (32%), Positives = 222/423 (52%), Gaps = 14/423 (3%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L D L ++ G +R R +DH +C + PL L LRI ++I+ +D
Sbjct: 37 LSKNDKNLCNALIFGVLRHRESIDHTLCAFSNIPLIKIDTAPLYL--LRITLFQILYMDR 94
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P +A ++ V +AK +N +LR +LP PK E A+ ++
Sbjct: 95 IPAFAAINTAVDIAKKTSGKKTAGFINAVLRNAAKNNSKITLPDPKAE-----PAKFISI 149
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
YS P+W+ +W G E++ L N+ P +LR N+ K + R L +L+L+ +
Sbjct: 150 QYSLPLWLSGKWNHAFGFEKSSLLCRQINTIPPITLRTNTLK-IDRQSLAQKLSLVAKNI 208
Query: 286 PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAA 345
EL+ + D+ + + + K GL +QDE+A +V ++ P+PG+ I+D CA
Sbjct: 209 --ELTEYADQGVSFTNPSILIREFEAFKLGLFQIQDEAAQIVTQLLAPRPGEKILDACAG 266
Query: 346 PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADL-RTFADNST 404
GGKT ++A + +G++ A D+ +L L AK + +IRT +L +T +
Sbjct: 267 LGGKTGHIAQLMENKGIIIAADVEPKKLEFLESDAKKLGI-EIIRTKPINLLKTSIKDFD 325
Query: 405 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464
D+VL+DAPC+GLGVL + D +W R D+ L Q ++L+AA+ LVKPGG+LVY+
Sbjct: 326 FYFDRVLIDAPCTGLGVLRRNPDAKWKRSKNDIARLAAKQKKMLNAAANLVKPGGILVYA 385
Query: 465 TCSIDPEENEERVEAFLLRHPEFSIDPA-DGLVPSDFVTKHGFFFSDPIKHSLDGAFAAR 523
CS + EENEE + FL + +FSID S +T+ F + P +++DG FAAR
Sbjct: 386 VCSCEREENEEVIHTFLNKRKDFSIDTHFKSNKYSRLMTRDKFLKTYPDTNNMDGFFAAR 445
Query: 524 LVR 526
L R
Sbjct: 446 LKR 448
>gi|86605784|ref|YP_474547.1| ribosomal RNA small subunit methyltransferase B [Synechococcus sp.
JA-3-3Ab]
gi|86554326|gb|ABC99284.1| ribosomal RNA small subunit methyltransferase B [Synechococcus sp.
JA-3-3Ab]
Length = 448
Score = 218 bits (554), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 150/416 (36%), Positives = 220/416 (52%), Gaps = 28/416 (6%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLI-CLLCHDEKTFSSMEPLLLQ-ILRIGFYEIVKLD-MP 167
D LV+++V G R RR LD LI C + + +PL L+ IL +GFY++ LD +P
Sbjct: 38 DCHLVSELVYGITRRRRTLDALIDCF----ARRPAHQQPLDLRLILYLGFYQLAFLDHIP 93
Query: 168 PYAVVDENVRLAKVALRPGAGNL---VNGILR--KLVLLKDNNSLPLPKLEGN-DRAQAR 221
P A + +V LA+ G G+L VNGILR + L PL L+ +
Sbjct: 94 PRAAIHTSVELARQV---GLGSLTGVVNGILRAYQRQALDGAEKDPLKPLQDTLPTDPIQ 150
Query: 222 ALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLL 281
AL +S P W+VR W + LG E +L W N P LR N + D V+Q L
Sbjct: 151 ALGIRHSFPDWLVRLWWERLGPAETEQLCAWFNQPPHLDLRVNPLRA--DVDKVIQ-ALA 207
Query: 282 KLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVD 341
+ +P + +R+ ++ +G +VQD SA VV +DPQPG+ ++D
Sbjct: 208 EAGIPASPIPEVPGALRLGQHAGDITALPGFAQGWWSVQDASAQQVVHYLDPQPGERVID 267
Query: 342 CCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD 401
CCAAPGGKT +MA + +G ++A+D + RLR L E + ++S IR + DL +
Sbjct: 268 CCAAPGGKTTHMAEQMQDRGEIWALDRHPHRLRRLEENVQRLGLSS-IRPLAIDLLSLDA 326
Query: 402 NSTV--------KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASL 453
+ D+VLLDAPCSGLG L + AD RW + ++EL LQ +LL A+
Sbjct: 327 AAEPPAPLPPWQSADRVLLDAPCSGLGTLHRHADARWRQTPAQIQELAHLQAQLLQVAAR 386
Query: 454 LVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFS 509
+KPGG+LVY+TC++ P ENE +++FL RHP ++ + L+ + GFF
Sbjct: 387 WLKPGGLLVYATCTLHPAENEAVIQSFLNRHPHWAAEGDPLLIWPHRQDRDGFFIQ 442
>gi|39998462|ref|NP_954413.1| 16S rRNA (5-methyl-C967)-methyltransferase [Geobacter
sulfurreducens PCA]
gi|409913814|ref|YP_006892279.1| 16S rRNA (5-methyl-C967)-methyltransferase [Geobacter
sulfurreducens KN400]
gi|39985409|gb|AAR36763.1| 16S rRNA (5-methyl-C967)-methyltransferase [Geobacter
sulfurreducens PCA]
gi|298507406|gb|ADI86129.1| 16S rRNA (5-methyl-C967)-methyltransferase [Geobacter
sulfurreducens KN400]
Length = 448
Score = 217 bits (553), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 151/422 (35%), Positives = 231/422 (54%), Gaps = 21/422 (4%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPY 169
D L+T++V G +R LD+L+ L C + +E +L +LR+G Y+I LD +P
Sbjct: 43 DRGLLTELVYGVLRRTATLDYLVDLFCATRA--AKLERSVLILLRLGLYQIFFLDRIPVS 100
Query: 170 AVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSH 229
A V+E V LA+ P A LVN +LR+ ++ +S+ P R A LA +SH
Sbjct: 101 AAVNETVTLAREK-SPRASGLVNAVLRRSD--RERSSIAWPD---RVRDPAGYLALRHSH 154
Query: 230 PVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHEL 289
P W+V W LG EEA L + P +LR N+ + A L + L + E
Sbjct: 155 PRWIVEGWIAQLGFEEAEALAEVMAAPPPLTLRVNTLRTSREAYLEL---LREAGTEAEP 211
Query: 290 SLHLDEFIRV--KTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPG 347
+ H IR+ +T + + G EGL VQDES+ L +++P+ G+ ++D CA+PG
Sbjct: 212 TRHSPHGIRILSRTAVPALPGFG---EGLVIVQDESSQLASLLLEPRSGERVLDACASPG 268
Query: 348 GKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKC 407
GK ++A ++ +G V A D+++ +L + E A+ + +IR AD R N+
Sbjct: 269 GKATHLAQIMADKGEVIAWDVSEKKLSPIAENARRLGIG-IIRPAMADARNPEQNA-APF 326
Query: 408 DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467
D++L+DAPCS LGVL + + +W + +D+ L Q +L A+ L+KPGG L+YSTCS
Sbjct: 327 DRILVDAPCSALGVLRRTPEGKWWKTPDDVARLAQSQCRILAGAASLLKPGGTLLYSTCS 386
Query: 468 IDPEENEERVEAFLLRHPEFSIDPADGLVP--SDFVTKHGFFFSDPIKHSLDGAFAARLV 525
+ENE +E FL R +F ++ + L P S+ +T G F S P +H +DG FAARL
Sbjct: 387 TTTDENESIIEDFLSRRADFMLEDLNYLFPGLSECITDRGMFRSWPHRHGMDGFFAARLR 446
Query: 526 RA 527
RA
Sbjct: 447 RA 448
>gi|325290449|ref|YP_004266630.1| sun protein [Syntrophobotulus glycolicus DSM 8271]
gi|324965850|gb|ADY56629.1| sun protein [Syntrophobotulus glycolicus DSM 8271]
Length = 461
Score = 217 bits (553), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 146/427 (34%), Positives = 225/427 (52%), Gaps = 21/427 (4%)
Query: 108 DDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-M 166
D RD +L +V GT++ R LD+ I H + S++ ++ ILR G ++++ +D +
Sbjct: 47 DSRDRQLAAALVNGTLKNRLTLDYAIRR--HLKTPMSALPHMVRAILRTGAFQLLYMDRI 104
Query: 167 PPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATI 226
P A V+E V+ K A P LVN +L ++ + P P + AR LA
Sbjct: 105 PAAAAVNEAVKSVK-AEEPKFAGLVNSVLHRVAEV--GWEFPWPD---QKKEPARYLAVK 158
Query: 227 YSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVP 286
YSHP W+ RW G EE KL + NN +R N+ K ++R +LV +L +QV
Sbjct: 159 YSHPQWLAARWLARWGLEETEKLCISNNLPAPTCIRTNTLK-ISRENLVSRLENEGIQVT 217
Query: 287 HELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAP 346
FI L ++ +EGL VQDES+ LV ++ +PG+ ++D C AP
Sbjct: 218 LSAKTPEGLFIEDFGALDELLS---YQEGLFTVQDESSQLVAHILGVKPGERVLDVCCAP 274
Query: 347 GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVK 406
GGKT ++A ++ QG + D+ +L ++NE + + +I+T D + +
Sbjct: 275 GGKTTHLAQLMNNQGTIIGNDLYPAKLSLVNELVERLGI-GIIQTQAGDAGIL-EGIEGR 332
Query: 407 CDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTC 466
DKVL+DAPCSGLGV+ +RADLRW + ++++EL +Q ++L A+ V PGG +VYSTC
Sbjct: 333 FDKVLVDAPCSGLGVIRRRADLRWQKSEQEIKELSEIQKKILLRAADFVAPGGEMVYSTC 392
Query: 467 SIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVT------KHGFFFSDPIKHSLDGAF 520
+I+PEEN E V+ F P+FS G + G F P +++DG F
Sbjct: 393 TIEPEENFEVVKVFRAERPDFSSVSLTGEINFPVTAGDKKQLAKGVFQILPHLYNMDGFF 452
Query: 521 AARLVRA 527
A+ RA
Sbjct: 453 LAKFRRA 459
>gi|399889943|ref|ZP_10775820.1| 16S rRNA methyltransferase B [Clostridium arbusti SL206]
Length = 443
Score = 217 bits (553), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 139/425 (32%), Positives = 227/425 (53%), Gaps = 25/425 (5%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL- 164
DL+ +D LVT+IV GT++++ +D ++ +K +++ +L ILR Y++ L
Sbjct: 34 DLEAKDKALVTEIVYGTLKYKYTIDKVLSYFI--KKDLKNVDIYILNILRASIYQMKYLT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P +A V+E V +AK G VNG+LR + KD N + +G D Q +
Sbjct: 92 KIPEFAAVNEAVEMAKKEKGIGPSKFVNGVLRNYIRSKDANFI-----KGEDEIQK--IC 144
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQ 284
YS WM + + G+E A+ +M N P+ S+R N KG + D+ +L +
Sbjct: 145 FDYSFEPWMAKLFINQYGKENAMIIMKGLNEIPNISVRVNPLKG-SYKDIYNELLIHDFN 203
Query: 285 VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 344
V E E I + G N+ L EG VQDESA LV +D + +I+D C+
Sbjct: 204 V--ETGYICKESINIIKG-GNIEHNKLFSEGFITVQDESAMLVAPSMDIKENMTILDLCS 260
Query: 345 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNST 404
APGGKT ++ LS G+V A D++ +L+++ + AK + +++ + D R + D
Sbjct: 261 APGGKTTHICEILSNTGVVRAFDLHANKLKLIEKNAKRLGIENLVCS-EMDSRKYDDKYE 319
Query: 405 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464
D+VL+D PCSGLG++ K+ +++WN+ L+D++ L Q ++ ++ VK G LVYS
Sbjct: 320 KTADRVLIDVPCSGLGIIKKKPEIKWNKSLKDLKNLVKTQRSIMMNSAKYVKDNGYLVYS 379
Query: 465 TCSIDPEENEERVEAFLLRHPEFSIDPA-----DGLVPSDFVTKHGFFFSDPIKHSLDGA 519
TC+ + EENEE + FL + E+ I+P D ++ S K G+ P K+ +DG
Sbjct: 380 TCTFNSEENEENIRWFLSSNREYEIEPLYFEKRDNIICS----KEGWVTIMPNKY-MDGF 434
Query: 520 FAARL 524
F +L
Sbjct: 435 FICKL 439
>gi|85858797|ref|YP_460999.1| 16S rRNA m(5)C 967 methyltransferase [Syntrophus aciditrophicus SB]
gi|85721888|gb|ABC76831.1| 16S rRNA m(5)C 967 methyltransferase [Syntrophus aciditrophicus SB]
Length = 471
Score = 217 bits (553), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 148/423 (34%), Positives = 225/423 (53%), Gaps = 19/423 (4%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPY 169
D L+T +V GT+R R LD +I L + FSSM+ + ILR Y+ + ++ +P +
Sbjct: 60 DRHLLTSLVYGTLRMRGRLDWIIQQLY--QGRFSSMQGGIRNILRTALYQFLFMERIPAF 117
Query: 170 AVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSH 229
A+VDE V LAK+ PG LVN +LR V N L P + + +A ++SH
Sbjct: 118 ALVDEAVELAKLRY-PGREKLVNALLRNAVRKVSANELSYPDFQ---KTPVEHIAVMHSH 173
Query: 230 PVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHEL 289
P W+VRRW G E L + NN P ++R NS K R+ L L V E
Sbjct: 174 PPWLVRRWLSVYGTERCRSLCMANNQVPPVAIRVNSLKA-DRSTLKEILEHEGFTV-SES 231
Query: 290 SLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGK 349
S D + + +++ +EGL +QDE++ L+ +V P G++I+D C G K
Sbjct: 232 SFSPDALL-ITDPPRHLRLTSTSREGLFILQDEASQLIGRLVAPAAGEAILDVCCGTGVK 290
Query: 350 TLYMASCLSGQGLVYAIDINKGRLRILNE-TAKLHQVNSVIRTIHADLRTFADNSTVK-- 406
T ++AS +S QG + A+D+ +L LN ++++ N IR AD T D + +
Sbjct: 291 TTHLASLMSNQGRILAVDLYPAKLEALNRLSSRMGISNIEIR--QADASTMEDETAFRNM 348
Query: 407 CDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTC 466
D++L+DAPCSGLG L + +++W + + LQ+++L+ A+ + GG LVYSTC
Sbjct: 349 FDRILVDAPCSGLGTLRRNPEIKWRLQPRALPSYSRLQEQILNRAAAFLHRGGCLVYSTC 408
Query: 467 SIDPEENEERVEAFLLRHPEF---SIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAAR 523
+I PEENE + FL RH EF + A P+ V ++GFF + P +DG FAA
Sbjct: 409 TILPEENELLIGKFLSRHDEFRQIRLSDASFAYPT-LVDENGFFRTAPDTSGMDGFFAAL 467
Query: 524 LVR 526
L +
Sbjct: 468 LTK 470
>gi|150390542|ref|YP_001320591.1| sun protein [Alkaliphilus metalliredigens QYMF]
gi|149950404|gb|ABR48932.1| sun protein [Alkaliphilus metalliredigens QYMF]
Length = 444
Score = 217 bits (553), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 139/430 (32%), Positives = 233/430 (54%), Gaps = 20/430 (4%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
FR + D VT++V G + ++D++I KT M P L +LR+ Y+I
Sbjct: 29 FRAETHTPVDKAFVTELVYGVVENLIWIDYVIDQFS-TTKTIK-MNPWTLSLLRLAIYQI 86
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
LD +P +A V+E+V L+K + +NG+LR ++ K+ LP R
Sbjct: 87 FFLDRVPVFAAVNESVDLSKKYCKHTTA-FINGVLRNILRKKEIIRLP-----DKSRDLL 140
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
+ L+ YSHP W+V+++ E L+ NN P +R N+ K ++ D + L
Sbjct: 141 QYLSVKYSHPKWLVQQFMAQFDDEFTESLLKANNERPDLYVRVNTLK-ISIEDCITALRE 199
Query: 281 LKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIV 340
+ V E S +++E ++VK G+ + + L +G +QD S+ LV ++DP PG I+
Sbjct: 200 KGITV--EQSPYIEEALKVK-GIHTIEKLDLYLKGQIYIQDFSSMLVARIMDPHPGALIM 256
Query: 341 DCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 400
D C+APGGK ++A + QG V A D+++ +L+++ E K V +I+T D +
Sbjct: 257 DVCSAPGGKATHLAQLMGNQGEVVARDVHEHKLKLIKENVKRLGV-KIIKTEVFDAKELD 315
Query: 401 DNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGV 460
+ D VL+DAPCSGLG++ ++ ++++ ++ ED++EL+ LQ E+L+ + VKPGG
Sbjct: 316 PTMLQRADGVLIDAPCSGLGIIRRKPEIKYRKKQEDIKELQQLQIEILNHGAEYVKPGGT 375
Query: 461 LVYSTCSIDPEENEERVEAFLLRHPEFSIDPAD----GLVPSDFVTKHGFFFSDPIKHSL 516
LVYSTC+IDP EN ++ FL + EF ++ + L+P + + P H
Sbjct: 376 LVYSTCTIDPRENHHVIKQFLKENNEFELEDINEKYKALLPGQHSEQMVQLY--PHVHHT 433
Query: 517 DGAFAARLVR 526
DG F A+L++
Sbjct: 434 DGFFIAKLIK 443
>gi|116747600|ref|YP_844287.1| sun protein [Syntrophobacter fumaroxidans MPOB]
gi|116696664|gb|ABK15852.1| sun protein [Syntrophobacter fumaroxidans MPOB]
Length = 449
Score = 217 bits (553), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 139/427 (32%), Positives = 226/427 (52%), Gaps = 14/427 (3%)
Query: 103 RTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIV 162
R + L++RD L+T++V G +RW+ LD I L ++P + +LR+ Y+I+
Sbjct: 32 RHERLEERDRALLTELVYGVLRWQGRLDWHIDQLSRTRP--EKIDPAVRILLRLALYQIL 89
Query: 163 KLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQAR 221
LD +P +A V+E V +AK VNG+LR+ + + P E +
Sbjct: 90 MLDRIPDHAAVNEAVNMAKTTQPAYLVKFVNGVLREALRRRSRWIWPEAGEE-----PGK 144
Query: 222 ALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLL 281
+A +HP+W V R G EE + + NN+ +LR N+ K T D ++Q
Sbjct: 145 YIAVTTAHPIWYVERLLHEFGFEETLDICNANNTVAPMTLRVNALK--TSIDTILQW-CA 201
Query: 282 KLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVD 341
+ + E S + +R+ +++ + + ++GL VQDE++ +V +V P+ G+ ++D
Sbjct: 202 EHGIDAEPSGVVPTAVRLSGLRRDLAETSIYRDGLVQVQDEASQIVSTLVAPRAGERVLD 261
Query: 342 CCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD 401
CA GGK+ ++ + +G V A+D + +L L + A+ Q +I+ ADL F+
Sbjct: 262 LCAGFGGKSTHLGILMGDRGEVVAVDNSAWKLEELRKNAR-RQGLRIIKPRTADLFEFSP 320
Query: 402 NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVL 461
+ D+VLLDAPCSG G L + D++W R L+D +Q E+LD A+ VKPGG L
Sbjct: 321 GTEDLFDRVLLDAPCSGFGTLRRNPDIKWRRHLKDPRRFGRIQKEMLDHAARFVKPGGAL 380
Query: 462 VYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDF--VTKHGFFFSDPIKHSLDGA 519
VYS C++ EEN+ E F HP++ I+P +P + FF + P +H +DG
Sbjct: 381 VYSACTLFQEENDAVAEHFAASHPDWQIEPVGPDLPDACRGMASGPFFRTWPHRHQVDGF 440
Query: 520 FAARLVR 526
FAARL R
Sbjct: 441 FAARLKR 447
>gi|433544430|ref|ZP_20500814.1| ribosomal RNA small subunit methyltransferase [Brevibacillus agri
BAB-2500]
gi|432184285|gb|ELK41802.1| ribosomal RNA small subunit methyltransferase [Brevibacillus agri
BAB-2500]
Length = 448
Score = 216 bits (551), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 138/381 (36%), Positives = 214/381 (56%), Gaps = 17/381 (4%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPY 169
D LVT++V GTI+ + LDH++ ++K ++ + +LR+ Y+I LD +P
Sbjct: 41 DTGLVTELVYGTIQRKLTLDHVLSHFVGNKK----LQTWVRNLLRLSLYQIRFLDRIPER 96
Query: 170 AVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSH 229
A V E V +AK G ++VNG+LR VL + + LPK DRA +A +SH
Sbjct: 97 AAVHEAVEMAKRRGHQGIASMVNGVLRN-VLRQPDVWERLPK---GDRATQ--IAVEHSH 150
Query: 230 PVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHEL 289
P W+VR+W G+ I + NN P S+R NS K T A ++ L +
Sbjct: 151 PEWLVRQWLTVYGEATTIAICEANNRHPHSSIRVNSLK--TSASELLD-KLAAEETAARQ 207
Query: 290 SLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGK 349
S + I V+ G + + L +EG +QDES+ LV + +PG ++D CAAPGGK
Sbjct: 208 SALSPQAILVEGG--HAAGSRLFREGYFTIQDESSMLVAPALAAKPGMRVLDACAAPGGK 265
Query: 350 TLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDK 409
T ++A + +G + A D++ + ++ +TAK + S+I I +D D D+
Sbjct: 266 TTHIAELMENRGHIVACDLHPHKRDLIAQTAKRLGI-SIIEPITSDALDLPDRGLGTFDR 324
Query: 410 VLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSID 469
+LLDAPCSG GV+ ++ DL+WN+ ED+ + LQ ELL A + ++ GVLVYSTC+I+
Sbjct: 325 ILLDAPCSGFGVIRRKPDLKWNKTPEDVRAIAQLQYELLKALAPMLAADGVLVYSTCTIE 384
Query: 470 PEENEERVEAFLLRHPEFSID 490
P+EN+E V+ F+ HP+F +D
Sbjct: 385 PKENQEIVQRFVKEHPDFVLD 405
>gi|194014930|ref|ZP_03053547.1| ribosomal RNA small subunit methyltransferase B [Bacillus pumilus
ATCC 7061]
gi|194013956|gb|EDW23521.1| ribosomal RNA small subunit methyltransferase B [Bacillus pumilus
ATCC 7061]
Length = 442
Score = 216 bits (550), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 123/390 (31%), Positives = 219/390 (56%), Gaps = 16/390 (4%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
+ KDL D+D L+T++V GT++ + LD+++ K + P ++Q+LR+ Y++
Sbjct: 27 MKDKDLADQDKPLLTELVYGTLQNKLALDYMLAPFV---KKPQKVAPWVMQLLRMSLYQM 83
Query: 162 VKLDMPPY-AVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
V L+ P+ A + E V L K G +LVNG+LR + +P + + +
Sbjct: 84 VYLEKIPHRAAIHEAVELTKKRGHKGISSLVNGVLRSV------QREGVPAFD-DIKDPV 136
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
+ L+ SHP+W+V+ W + G E A + + P +LR N R + RA L Q L
Sbjct: 137 KRLSIETSHPLWLVQEWVQSYGFEAAESMCRIHLVPPKQTLRVN-RMKIGRAAL--QQEL 193
Query: 281 LKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIV 340
L + EL ++ +++ G +++ +EG +QDES+ LV +DPQPG++++
Sbjct: 194 LDAGIETELGDLSEDALKLMKG--SIVSTPSFQEGYVTIQDESSMLVARALDPQPGEAVL 251
Query: 341 DCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 400
D CAAPGGK+ ++A ++ +G + ++D+++ +++++ + AK + + +
Sbjct: 252 DACAAPGGKSTHIAERMNDKGQIVSLDLHEHKVKLIKQAAKRLNLTQIEAKALDARKAKG 311
Query: 401 DNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGV 460
D S D++L+DAPCSG GV+ ++ D+++ + ED L +Q +L + L+KPGG
Sbjct: 312 DYSEASFDRILIDAPCSGFGVIRRKPDMKYTKSKEDSARLAAIQQAILKETAPLLKPGGT 371
Query: 461 LVYSTCSIDPEENEERVEAFLLRHPEFSID 490
LVYSTC++DP EN++ + AFL H +F D
Sbjct: 372 LVYSTCTMDPTENQQVIHAFLQEHQDFEPD 401
>gi|145219990|ref|YP_001130699.1| sun protein [Chlorobium phaeovibrioides DSM 265]
gi|145206154|gb|ABP37197.1| sun protein [Chlorobium phaeovibrioides DSM 265]
Length = 445
Score = 216 bits (550), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 153/438 (34%), Positives = 225/438 (51%), Gaps = 48/438 (10%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLIC-LLCHDEKTFSSMEPLLLQILRIGFYEIVKLD 165
L D T +V G +R+R LD +I H+ + S P + ILR+G ++++ LD
Sbjct: 35 LSRTDRAFATSLVNGVLRYRLQLDFVIGHFYSHNLQKAS---PAIRNILRLGAWQLLFLD 91
Query: 166 -MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARA-- 222
+P +AVV+E+VRLA+ LVN +LRK+ S LE RA A
Sbjct: 92 RVPAWAVVNESVRLARRFKGERMAKLVNAVLRKI-------SPETIHLEEWTRAMEPAAR 144
Query: 223 LATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLK 282
LA YSHP +V+ W G + A ++ ++N P F R NS K T +D
Sbjct: 145 LALRYSHPEELVKEWIAAYGTQRAESMLRYDNESPWFGFRINSLK--TDSDRFFT----- 197
Query: 283 LQVPHELSLHLDEFIRVKTGLQNVIQAG-------LLKEGLCAVQDESAGLVVAVVDPQP 335
E R+ +GL+ + + L+ GL +VQ+ + L +++P P
Sbjct: 198 -------QTGTTEVARLDSGLRKLFLSQDFSPFEVPLQNGLVSVQNPTQLLACLLLNPTP 250
Query: 336 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINK---GRLRILNETAKLHQVNSVIRTI 392
G ++D CAAPGGKT +A + +G + A+DI + ++R L ET + S+I +
Sbjct: 251 GSEVLDMCAAPGGKTAALAELMGNEGHITALDIYEQKTNKIRRLAETLGI----SIITAL 306
Query: 393 HADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAAS 452
D R+F D +LLDAPC+G GVL +R +LRW E ++ L LQ ELL+ A+
Sbjct: 307 TDDARSFI--PPTPPDAILLDAPCTGTGVLGRRTELRWKLDSEKLDGLLKLQAELLEHAA 364
Query: 453 LLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVT---KHGFFFS 509
++K GGVLVY+TCS+DP EN + EAFL RHPEFS D G +P F + G +
Sbjct: 365 HILKEGGVLVYATCSVDPRENNLQTEAFLQRHPEFSPDANPGSLPPAFSSVLRPDGSLLT 424
Query: 510 DP-IKHSLDGAFAARLVR 526
P + DG F R+V+
Sbjct: 425 LPGEQQGFDGGFCHRMVK 442
>gi|21673438|ref|NP_661503.1| Sun protein [Chlorobium tepidum TLS]
gi|21646540|gb|AAM71845.1| sun protein [Chlorobium tepidum TLS]
Length = 428
Score = 216 bits (549), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 143/424 (33%), Positives = 219/424 (51%), Gaps = 39/424 (9%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLIC-LLCHDEKTFSSMEPLLLQILRIGFYEIVKLD 165
L D L ++V GT+++R D +I HD ++ +L ILR+G Y++++LD
Sbjct: 33 LGKNDRALAKELVAGTLKYRLQCDFIIARFYRHD---YAKAATVLKHILRLGVYQLLRLD 89
Query: 166 -MPPYAVVDENVRLAKVALRPGAGNLVNGILR---KLVLLKDNNSLPLPKLEGNDRAQAR 221
+P A V+E+V+LA+ LVNG+LR K + D + +P +++
Sbjct: 90 RVPKSAAVNESVKLARKFKGDHLARLVNGLLRNISKATIDLDAWTAEMP--------ESK 141
Query: 222 ALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVM-QLNL 280
L+ +YS P W+ RW G + + ++ N P+ R N K L +L+
Sbjct: 142 RLSILYSFPEWLAARWLMRYGPDATLAMLAHGNLPPATGYRINRLKANPETLLARPELSD 201
Query: 281 LKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIV 340
K + LD F K Q + LLKEGL +VQ+ + G + P+PG ++
Sbjct: 202 AKRVADAD---GLDRFFFSK---QFALLEPLLKEGLVSVQNPAQGQACLMAAPEPGSTVF 255
Query: 341 DCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 400
D CAAPGGK+ +MA + +G + A+D ++ + A + ++I D TF
Sbjct: 256 DMCAAPGGKSTFMAELMENRGRIIALDRTPAKVARIASNASALGI-TIIEPREGDALTF- 313
Query: 401 DNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGV 460
+ D +LLDAPC+G GVL +RA+LRW E + EL LQ +LD A+ L++PGGV
Sbjct: 314 -DPGCAMDTILLDAPCTGTGVLGRRAELRWRTTPEKLRELAALQAAMLDRAASLLRPGGV 372
Query: 461 LVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAF 520
L+Y+TCS++PEENE + EAFL RHPEF + + +P + GF DG F
Sbjct: 373 LLYATCSVEPEENELQTEAFLKRHPEFIAEASRLTLPG---SHEGF----------DGGF 419
Query: 521 AARL 524
AAR
Sbjct: 420 AARF 423
>gi|255525650|ref|ZP_05392583.1| sun protein [Clostridium carboxidivorans P7]
gi|296185410|ref|ZP_06853820.1| ribosomal RNA small subunit methyltransferase B [Clostridium
carboxidivorans P7]
gi|255510636|gb|EET86943.1| sun protein [Clostridium carboxidivorans P7]
gi|296050244|gb|EFG89668.1| ribosomal RNA small subunit methyltransferase B [Clostridium
carboxidivorans P7]
Length = 442
Score = 215 bits (548), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 142/427 (33%), Positives = 234/427 (54%), Gaps = 26/427 (6%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD 165
D++D+D LVT+IV GT++++ +D + L + + ++ +L ILRI Y+I LD
Sbjct: 34 DMNDKDKALVTEIVYGTLKYKYTIDTI--LNYYIKSGLKKLDVDILNILRISIYQIRYLD 91
Query: 166 -MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P +AVV+E V LAK A LVNG+LR L+ NN N + +
Sbjct: 92 KIPEFAVVNEAVELAKRKAVKTA-RLVNGVLRSY--LRSNNIDYY-----NKNSDIEKMC 143
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQ 284
YS P WMV ++ G+EE K++ N P+ ++R N+ K T + + L K
Sbjct: 144 FDYSFPKWMVSLFSNQYGKEETKKILQGLNEVPAITVRVNNLK--TNYEEAWE-ELKKNG 200
Query: 285 VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 344
E E I + G +N+ L K GL VQDESA +V ++ + +++D C+
Sbjct: 201 YDIEEGKVCPEAIIINRG-RNIENNPLFKNGLITVQDESAMMVAPSMELKENMTVLDLCS 259
Query: 345 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNST 404
APGGKT ++A + QG ++A DI++ +L ++ E AK + +V + D + D
Sbjct: 260 APGGKTCHIAELTNNQGKIFAFDIHENKLPLIKENAKRLGITNV-KCGTLDASKYMDIYE 318
Query: 405 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464
K D+VL+D PCSGLG++ K+ +++WN+ E +E L +Q ++ A+ VK G L+Y+
Sbjct: 319 EKGDRVLIDVPCSGLGIIRKKPEIKWNKDKESLESLVKIQKTIMLNAAKYVKKNGKLIYA 378
Query: 465 TCSIDPEENEERVEAFLLRHPEFSIDPA-----DGLVPSDFVTKHGFFFSDPIKHSLDGA 519
TC+++ EENEE ++ F+ + P+F I+P D ++ D G+ P K+ +DG
Sbjct: 379 TCTLNKEENEENIKWFIKKRPDFQIEPIYYGKLDNIIYHD----EGYITILPNKY-MDGF 433
Query: 520 FAARLVR 526
F A+++R
Sbjct: 434 FIAKMIR 440
>gi|403386878|ref|ZP_10928935.1| 16S rRNA methyltransferase B [Clostridium sp. JC122]
Length = 442
Score = 215 bits (547), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 135/408 (33%), Positives = 214/408 (52%), Gaps = 26/408 (6%)
Query: 91 NEMGYVERTLG--FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEP 148
N Y LG DL D D LVT+IV GTI+++ +D +I K F +E
Sbjct: 17 NNKAYSNIVLGKELNKSDLSDVDKGLVTEIVYGTIKYKYTIDKIIQSFTG--KNFKKLED 74
Query: 149 LLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSL 207
+L ILRI Y+I LD +PP+A V+E V L K GA LVNG+LR
Sbjct: 75 FVLNILRISIYQIKYLDKIPPFAAVNEAVNLTKKNSSLGASKLVNGVLRNY--------- 125
Query: 208 PLPKLE----GNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRA 263
L LE G D + L YS P W+V + K G++ K+++ N P+ ++R
Sbjct: 126 -LRNLEKSYCGEDPIEK--LCFEYSFPRWLVEHFIKQYGRKTTEKILIGLNERPALTVRV 182
Query: 264 NSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDES 323
N KG ++ + QV E IR+ G +N+ L KEG VQDES
Sbjct: 183 NEIKG-EYEEIYNSMENEGYQVSE--GYVAPEAIRIVNG-RNIEDNRLFKEGYVTVQDES 238
Query: 324 AGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLH 383
A LV ++ ++D C+APGGKT +++ + G V A DI++ +L ++ + AK
Sbjct: 239 AMLVAPSMELNSDSRVLDLCSAPGGKTTHISEIMDNTGEVLAFDIHENKLSLIKDNAKRL 298
Query: 384 QVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKIL 443
+N+ I+ D + D+VL+D PCSGLG++ K+ ++++ + ++++ + +
Sbjct: 299 NINN-IKCETLDASVYKKEFNKYADRVLIDVPCSGLGIIRKKPEIKYTKNQKELKSIVEI 357
Query: 444 QDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDP 491
Q +++ A+ VK GV++YSTC+++ EENE+ ++ FL HP F ++P
Sbjct: 358 QRSIMNNAAKYVKKDGVILYSTCTLNKEENEKNIQWFLKNHPNFKLEP 405
>gi|83589751|ref|YP_429760.1| sun protein [Moorella thermoacetica ATCC 39073]
gi|83572665|gb|ABC19217.1| sun protein [Moorella thermoacetica ATCC 39073]
Length = 457
Score = 215 bits (547), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 149/429 (34%), Positives = 220/429 (51%), Gaps = 18/429 (4%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
++ LD R+ L T++ I+ LD + L + + P + +LR+G ++
Sbjct: 36 LKSAGLDGRERALATELAYSAIKAWGTLDWALGLFLR--QPLEKLPPWIRCVLRLGATQL 93
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
+ + +PP A + E V LAK G LVNG+LR L KD +LP P + + A
Sbjct: 94 LYVPRIPPRAAIYETVELAKKYGHRGTTGLVNGVLRHLDRQKD--ALPYPDWKTDP---A 148
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
LA Y HP W+V RW + G +E L +N P R N+ K TR D V+ L
Sbjct: 149 GYLALRYYHPRWLVERWLEEFGYQETEYLCRADNEPPPTIARVNTLK--TRKD-VLAARL 205
Query: 281 LKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIV 340
+ + E + V+ GL + + +EGL VQDE + LV + P G ++
Sbjct: 206 QAEGATVRPARYAPEGLVVE-GLGALEASPSFQEGLFYVQDEGSQLVSHALHPDSGAWVI 264
Query: 341 DCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 400
D AAPGGKT ++A ++ +G + A D+++GRL ++ + V V RT+ D R
Sbjct: 265 DASAAPGGKTTHLAQLMADRGTILACDVHRGRLDLIAANCRRLGVTCV-RTVLVDARELG 323
Query: 401 DNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGV 460
+ D +L+DAPCSGLGVL +R D RW + EL LQ +L A +KPGGV
Sbjct: 324 ERYPAAADYLLIDAPCSGLGVLRRRPDARWRKEAPRTRELARLQLAILMGARQALKPGGV 383
Query: 461 LVYSTCSIDPEENEERVEAFLLRHPEF---SIDPADGLVPSDFV--TKHGFFFSDPIKHS 515
LVYSTC++ PEEN+E V FL R EF S++P ++P D + + G+ P +H
Sbjct: 384 LVYSTCTLLPEENQEVVREFLERAGEFRPDSLEPWLPVLPPDLMVTARQGWVQFLPQRHG 443
Query: 516 LDGAFAARL 524
DG F AR+
Sbjct: 444 TDGFFIARI 452
>gi|158320464|ref|YP_001512971.1| sun protein [Alkaliphilus oremlandii OhILAs]
gi|158140663|gb|ABW18975.1| sun protein [Alkaliphilus oremlandii OhILAs]
Length = 445
Score = 215 bits (547), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 129/395 (32%), Positives = 232/395 (58%), Gaps = 16/395 (4%)
Query: 96 VERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILR 155
+ + L + +L DR+L +T++V G + + Y+DH++ + + M P L +LR
Sbjct: 25 LNKELNNESYNLLDRNL--LTELVYGVLENQIYIDHVLSQFSNFQ--LDKMNPYTLNLLR 80
Query: 156 IGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEG 214
+G Y+++ LD +P +A V+E V L+K + G +NG+LR + ++ N++ +PK E
Sbjct: 81 LGIYQLLFLDRVPSFAAVNETVNLSKKYCKKTTG-FINGVLRNV--QRNRNNIKMPKPEK 137
Query: 215 NDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADL 274
N + + L+ YSHP W+V+ + K+ +L+ NN P LR N+ K ++ AD
Sbjct: 138 N---RIKYLSIRYSHPEWLVQLFLKHFDVNFVEELLKANNKKPDLYLRINTLK-ISVADC 193
Query: 275 VMQLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQ 334
+ L V E S ++E I VK G+ N+ + K+G +QD S+ LV + P+
Sbjct: 194 IQLLEAEGYVV--EQSKIVEEAIVVK-GIHNIEKTDFYKKGYIQIQDISSMLVAKALAPK 250
Query: 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHA 394
G+ ++D C+APGGKT ++A ++ +G + A DI++ +L++++ TAK ++ +I+T
Sbjct: 251 EGELVMDICSAPGGKTTHIAQLMNNKGKIIARDIHEHKLKLIDRTAKRLGIH-IIQTEKF 309
Query: 395 DLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLL 454
++ K DKVL+DAPCSGLG++ ++ ++++ + +D+ + LQ ++L A+
Sbjct: 310 SGDHLDESFIHKADKVLVDAPCSGLGIIRRKPEIKYRKEAQDITSIVELQYKILKTAAQY 369
Query: 455 VKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSI 489
VK G LVYSTC+I+PEEN+ V+ FL +H +++
Sbjct: 370 VKIEGTLVYSTCTINPEENDHIVQKFLEQHQNYTL 404
>gi|428223826|ref|YP_007107923.1| sun protein [Geitlerinema sp. PCC 7407]
gi|427983727|gb|AFY64871.1| sun protein [Geitlerinema sp. PCC 7407]
Length = 446
Score = 214 bits (546), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 150/439 (34%), Positives = 222/439 (50%), Gaps = 22/439 (5%)
Query: 94 GYVERTLG--FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLL 151
GY + L R DL D RL T++V G++R +R LD L+ L K P L
Sbjct: 20 GYADVVLDRLLRQADLQPADRRLATELVYGSVRQQRTLDALVDQL--GTKRLDQQPPDLR 77
Query: 152 QILRIGFYEIVKL-DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLK---DNNSL 207
++ +G Y++ L +P A V+ V +AK +VNG+LR+ + L D L
Sbjct: 78 FLMHLGLYQLRYLSQVPAAAAVNTTVEIAKHNRLGRLAAVVNGMLRQYLRLAAQGDPLQL 137
Query: 208 PLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRK 267
P LE LA YS+P W++ W + L +L N P LR N +
Sbjct: 138 PADPLE--------RLAVQYSYPTWILEVWRQQLDDAGVEQLCQALNQPPPLDLRVNLLR 189
Query: 268 GVTRADLVMQLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLV 327
A +Q L + + E + + +R++ + + KEG VQD SA LV
Sbjct: 190 STPEA---VQTALAQAGIVAEPVPGVPQALRLQGSPGTISELPGFKEGWWTVQDSSAQLV 246
Query: 328 VAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNS 387
V+DP+PG++++D CAAPGGKT ++A + +G ++A D RLR + + + + S
Sbjct: 247 SQVLDPRPGETVIDACAAPGGKTTHLAELMGDRGTIWACDRYPSRLRKVTQNLQRLGLQS 306
Query: 388 VIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDEL 447
V R D R + + D+VL+DAPCSGLG L++ AD RW + + EL LQ E+
Sbjct: 307 V-RLQAGDSRDLSQFRQ-QADRVLVDAPCSGLGTLNRHADARWRQTPDTARELAALQQEI 364
Query: 448 LDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFF 507
L A+ VKP G LVY+TC+++P ENE V AFL +PE++I P +P + G+
Sbjct: 365 LAEAATWVKPQGHLVYATCTLNPLENESVVTAFLQAYPEWAIAPLPEGLPG-AIAPEGWL 423
Query: 508 FSDPIKHSLDGAFAARLVR 526
P H +DG F A L R
Sbjct: 424 KLWPHLHRMDGFFIAALRR 442
>gi|118444654|ref|YP_878315.1| sun protein [Clostridium novyi NT]
gi|118135110|gb|ABK62154.1| sun protein [Clostridium novyi NT]
Length = 443
Score = 214 bits (546), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 137/423 (32%), Positives = 230/423 (54%), Gaps = 17/423 (4%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+DD+D L+T+IV GTI+++ +D ++ +K S++ +L ILRI Y+I LD
Sbjct: 35 IDDKDKGLITEIVYGTIKYKYTIDTILNNFL--KKGIKSLDSYVLNILRITVYQIKFLDK 92
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P +A V+E V +AK GA LVNG+LR N L K ND+ L
Sbjct: 93 IPNFAAVNEAVEIAKKEKSVGASKLVNGVLR-------NYLRNLDKKYYNDKNLVETLCF 145
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
YS+ W+V K G E A ++ N P+ ++R N+ K T D NL +
Sbjct: 146 KYSYDKWLVNMLIKQYGNEIAEDILKGLNERPAVTVRVNNLK--TDHDEAFS-NLEEYGY 202
Query: 286 PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAA 345
E E I + G +++ + L KEG VQDESA LV +D + G +++D C+A
Sbjct: 203 DVEEGYICPEAIVINKG-KSIEKNPLFKEGKITVQDESAMLVAPSIDAKEGATVLDLCSA 261
Query: 346 PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTV 405
PGGKT +++ ++ G+V A DI++ +L ++ E AK +++ I D F
Sbjct: 262 PGGKTTHISEIMNNTGIVKAFDIHENKLSLVKENAKRLGIDN-ISCAEMDASKFNKELEN 320
Query: 406 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465
D VL+D PCSGLG++ K+ ++++ + ++ +++ +Q ++++ A+ VK G L+YST
Sbjct: 321 SADMVLIDVPCSGLGIIRKKPEIKYTKDIKSTKDIVAIQKKIMENAAKYVKKEGTLLYST 380
Query: 466 CSIDPEENEERVEAFLLRHPEFSIDP-ADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARL 524
C+I+ EENE+ + F+ + PE+ ++P G + + ++G P K+ +DG F A+L
Sbjct: 381 CTINKEENEKNINWFIKKFPEYKVEPLFYGNMSNIIYNENGTVTILPNKY-MDGFFIAKL 439
Query: 525 VRA 527
+
Sbjct: 440 KKT 442
>gi|352516237|ref|YP_004885554.1| putative rRNA methyltransferase [Tetragenococcus halophilus NBRC
12172]
gi|348600344|dbj|BAK93390.1| putative rRNA methyltransferase [Tetragenococcus halophilus NBRC
12172]
Length = 452
Score = 214 bits (546), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 148/446 (33%), Positives = 241/446 (54%), Gaps = 53/446 (11%)
Query: 60 HRAVSAVR------LMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLR 113
H A VR L RIQ GGA+++LL + G L +D R
Sbjct: 3 HDAKKTVRFAALQALERIQKGGAYSNLLLNEEIKKGQ----------------LSAKDSR 46
Query: 114 LVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVV 172
L+T++V GT+ + L+ + + K + LLL++ Y++ LD +P +A++
Sbjct: 47 LLTELVYGTVSRQLLLEFYLKPFIANAKKIDAWVKLLLEL---SIYQLYFLDRIPDHAIL 103
Query: 173 DENVRLAKVALRPGAGNLVNGILRKLVL--LKDNNSLPLPKLEGNDRAQARALATIYSHP 230
+E V +AKV G G VNG+LR + L D ++ P + LAT S P
Sbjct: 104 NEAVDIAKVRGNVGIGKFVNGVLRNIKRQGLPDTATIDDP---------VKRLATQISMP 154
Query: 231 VWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELS 290
W+ +R + +G E+ +L + S SLR ++RK +TR + L ++ +
Sbjct: 155 QWLTKRLVEEIGMEQTKQLGISLFSPSQVSLRVDTRK-ITRKQAIESLAQEGIEA---IE 210
Query: 291 LHLDEF-IRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGK 349
+ E+ I K G V ++ L +GL +QDES+ LV + + ++D CAAPGGK
Sbjct: 211 STISEYGIIAKKGF--VAKSQLFHDGLLTIQDESSMLVAPALQIENKHQVLDACAAPGGK 268
Query: 350 TLYMASCLSGQ--GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR----TFADNS 403
T ++AS L+ + G V A+DI+K ++R++ E A V V++ D R TFA +S
Sbjct: 269 TTHIASFLAAKENGRVTALDIHKQKVRLIEENAIRMHVEDVVKAKELDARKVNNTFAQSS 328
Query: 404 TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463
D++L+DAPCSGLG++ ++ D+++ ++ ED++ L +Q E+L++ + +KP G+LVY
Sbjct: 329 ---FDRILVDAPCSGLGLMRRKPDIKYVKKPEDLQSLSAIQLEILESVAPSLKPSGILVY 385
Query: 464 STCSIDPEENEERVEAFLLRHPEFSI 489
STC+I PEEN+E V+ FL +HPEF +
Sbjct: 386 STCTILPEENQEVVKQFLQKHPEFEL 411
>gi|410584639|ref|ZP_11321741.1| ribosomal RNA small subunit methyltransferase RsmB [Thermaerobacter
subterraneus DSM 13965]
gi|410504225|gb|EKP93737.1| ribosomal RNA small subunit methyltransferase RsmB [Thermaerobacter
subterraneus DSM 13965]
Length = 488
Score = 214 bits (546), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 153/441 (34%), Positives = 225/441 (51%), Gaps = 21/441 (4%)
Query: 95 YVERTLG--FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQ 152
YV++ L L R+ L T++ G R + LD + + ++P +
Sbjct: 58 YVDQALARLLEGSGLPARERALATELAYGVARRQGSLDWALARWAR--RPPERLDPPVRV 115
Query: 153 ILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPK 211
LR+G Y++ LD +P +A V E+V L + A VN +LR+ + P
Sbjct: 116 ALRLGAYQLWHLDRIPDHAAVAESVELVRRHGPGYAAGFVNAVLRRAA----RHGFPHEA 171
Query: 212 LEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTR 271
+ G LA +HP W+VRRW + LG EE +L+ NN P S R N + R
Sbjct: 172 VPGAAEDLETHLALTLAHPRWLVRRWLERLGPEETRRLLEANNRIPPLSARVN----MLR 227
Query: 272 ADLVMQLNLLKLQ-VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAV 330
AD L Q V E L E +R+ G+ + ++G QDES+ L V V
Sbjct: 228 ADPRSLAAALAAQGVAVEPGRFLPEALRLGHGVSPA-ELEAFQQGALTWQDESSMLAVHV 286
Query: 331 VDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIR 390
+DP+PGQ ++D AAPGGK+ +MA + +G V A D++ GRL + A+ + SV
Sbjct: 287 LDPRPGQLVLDVAAAPGGKSTHMAERMGDRGRVVACDVDPGRLEKVRAAARRLGLRSV-E 345
Query: 391 TIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDA 450
+ D R + + D+VL D PCSGLGV+++R DLRW + ED++ L LQ ELL A
Sbjct: 346 PLALDGRLLPERFAGQADRVLADVPCSGLGVIARRPDLRWRKTPEDLKALAALQGELLRA 405
Query: 451 ASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPE-FSIDPADGLVPSDFV----TKHG 505
A+ +KPGGVLVYSTC+ +PEEN++ VE FL + F+ +P+ T+ G
Sbjct: 406 AAACLKPGGVLVYSTCTTEPEENQQVVEGFLREGGDRFAAVDLRPRLPAPLRDEPGTERG 465
Query: 506 FFFSDPIKHSLDGAFAARLVR 526
+ P +H +DG F A L R
Sbjct: 466 WLQLWPHRHGVDGFFIACLQR 486
>gi|226313315|ref|YP_002773209.1| ribosomal RNA small subunit methyltransferase [Brevibacillus brevis
NBRC 100599]
gi|226096263|dbj|BAH44705.1| probable ribosomal RNA small subunit methyltransferase
[Brevibacillus brevis NBRC 100599]
Length = 448
Score = 214 bits (545), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 135/389 (34%), Positives = 214/389 (55%), Gaps = 21/389 (5%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
++L D LVT++V GTI+ + LDH++ ++K ++ + +LR+ Y+I L
Sbjct: 35 ENLSAADAGLVTELVYGTIQRKMTLDHVLSHFVGNKK----VQTWVRNLLRLSLYQIHFL 90
Query: 165 D-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARAL 223
D +P A V + V +AK G ++VNG+LR N L P + +RAL
Sbjct: 91 DRIPERAAVHQAVEIAKKRGHQGIASMVNGVLR--------NVLRQPDVWERQPKGSRAL 142
Query: 224 --ATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLL 281
A YSHP W+VR+W G+E I + NN P ++R N+ K T D V+ L
Sbjct: 143 QIAVAYSHPEWLVRQWLNVYGEETTIAICEANNRTPHSAIRVNAWK--TTKDQVLD-KLA 199
Query: 282 KLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVD 341
+ + + S I ++ G +V + L KEG +QDES+ LV + QPG ++D
Sbjct: 200 EEGLEGQASSVSPHAILMEGG--HVAGSRLFKEGYFTIQDESSMLVAPALAAQPGMRVLD 257
Query: 342 CCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD 401
CAAPGGKT ++A + +G + A D++ + ++ AK + ++I+ I +D +
Sbjct: 258 ACAAPGGKTTHIAEMMENRGEIIASDVHPHKRDLIANAAKRLGI-TIIQPIVSDALDLPE 316
Query: 402 NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVL 461
+ D++LLDAPC+G GV+ ++ DL+WN+ ED+ + LQ ELL + L+ GGV+
Sbjct: 317 KALGTFDRILLDAPCTGFGVIRRKPDLKWNKTPEDVRAIAQLQYELLKTLAPLLAEGGVM 376
Query: 462 VYSTCSIDPEENEERVEAFLLRHPEFSID 490
VYSTC+I+P EN+E V F+ HP+F D
Sbjct: 377 VYSTCTIEPAENQEIVRRFVEEHPDFVFD 405
>gi|148262276|ref|YP_001228982.1| sun protein [Geobacter uraniireducens Rf4]
gi|146395776|gb|ABQ24409.1| sun protein [Geobacter uraniireducens Rf4]
Length = 448
Score = 214 bits (545), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 153/461 (33%), Positives = 240/461 (52%), Gaps = 33/461 (7%)
Query: 68 LMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRR 127
L+RI ++AD+L + E + GF L D L+T++V G +R +
Sbjct: 14 LLRIDKERSYADILIDR------------ELSSGF----LQGPDRGLLTELVYGVLRRQG 57
Query: 128 YLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPG 186
LD++I + +E +L +LRIG Y+I LD +P A V+E V+LAKV L P
Sbjct: 58 TLDYIINRFSKQKS--ERLERSVLVLLRIGLYQIFYLDRVPVSAAVNETVKLAKV-LAPR 114
Query: 187 AGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEA 246
A VN +LR +D+ + P ++ L+T YSHP W+V W LG EA
Sbjct: 115 ASGFVNAVLRSADRERDDIAYP-----DKEKDPVGYLSTFYSHPSWLVAGWIGQLGFAEA 169
Query: 247 IKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFIRVKTGLQNV 306
L P ++R N+ K +R +L+ +L +Q E + +R+ T +V
Sbjct: 170 ESLAKAMAEPPPLTIRTNTLK-TSREELMERLASEGVQC--EATRFSPLGVRIITA-GSV 225
Query: 307 IQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAI 366
+ ++GL VQDES+ L V + P+PG+ ++D CAAPGGK +MA + G + A
Sbjct: 226 ARLQSFRDGLFTVQDESSQLAVMFLSPEPGEKVLDACAAPGGKATHMAQLMGNSGEIIAC 285
Query: 367 DINKGRLRILNETAKLHQVNSVIRTIHADL-RTFADNSTVKCDKVLLDAPCSGLGVLSKR 425
D+ +LR++ E A + S I+T+ + R + ++LLDAPCSGLGV+ +
Sbjct: 286 DVIGRKLRLIGENAARLGI-SCIKTVPLNTARPLNSIKDARFQRILLDAPCSGLGVIRRN 344
Query: 426 ADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHP 485
+ +W + D+ EL Q +L+ + +K GG+L+Y+TCS EENE ++ FL RH
Sbjct: 345 PEGKWWKTAADVAELVRGQKTILENLAGYLKRGGILLYATCSTTREENEAVIDDFLSRHS 404
Query: 486 EFSIDPADGLVPS--DFVTKHGFFFSDPIKHSLDGAFAARL 524
+F ++ L P+ + +T G F P + +DG FAARL
Sbjct: 405 DFVLEDLRVLFPAYGELITPQGCFRGWPHRQGMDGFFAARL 445
>gi|335040151|ref|ZP_08533287.1| sun protein [Caldalkalibacillus thermarum TA2.A1]
gi|334179976|gb|EGL82605.1| sun protein [Caldalkalibacillus thermarum TA2.A1]
Length = 429
Score = 214 bits (545), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 139/423 (32%), Positives = 228/423 (53%), Gaps = 46/423 (10%)
Query: 103 RTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIV 162
+ + LD RD L+T++V GTI+ +R LD + ++ + ++ + Q+LR+ Y++
Sbjct: 32 KHRQLDLRDRHLLTELVYGTIQHQRLLDFYLEPFL--KQGMAKLDVWVKQLLRLSAYQLF 89
Query: 163 KLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQAR 221
L +P YAVV+E V+LAK G L+NG+LR L+ R R
Sbjct: 90 FLTRIPSYAVVNEAVKLAKKRGHRGIQGLINGVLRNLL-----------------REPKR 132
Query: 222 ALATI----------YSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTR 271
+L TI SHP W+V RW + G + A ++ NN P ++R N K ++
Sbjct: 133 SLDTICDPVERIAVETSHPTWLVARWAEQYGLKTAQEICRANNERPVLTVRVNPLKA-SK 191
Query: 272 ADLVMQLNLLKLQVPHELSLHLDEFIRVKTGLQ-----NVIQAGLLKEGLCAVQDESAGL 326
+++ L L H+ E + GL+ ++++ L K+G +Q ES+ L
Sbjct: 192 QEVMDHLR--------ALGYHVSETAVAQQGLRVENPAKLMESSLFKQGYFTIQSESSML 243
Query: 327 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVN 386
V ++ P+PG ++D CAAPGGKT ++A + +G V A D++ +L+++ + AK +
Sbjct: 244 VAPLLRPEPGMKVLDLCAAPGGKTTHLAELMDNRGHVVANDVHAHKLKLIKKAAKRLGI- 302
Query: 387 SVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDE 446
++I D T + +++L+DAPCSG GV+ + DL+W++R ED++ + LQ +
Sbjct: 303 TIINVTAYDGTTVSSGQLGHFERILVDAPCSGFGVIKHKPDLKWHKRPEDIKHIAELQLQ 362
Query: 447 LLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGF 506
LL A+ L+ PGG LVYSTC+ID EENE + FL HP+F + + P DF + GF
Sbjct: 363 LLTRAAQLLIPGGQLVYSTCTIDREENESVITRFLEDHPDFEVGEIRQIFPQDFGSD-GF 421
Query: 507 FFS 509
F +
Sbjct: 422 FMA 424
>gi|410658818|ref|YP_006911189.1| Ribosomal RNA small subunit methyltransferase B [Dehalobacter sp.
DCA]
gi|410661804|ref|YP_006914175.1| Ribosomal RNA small subunit methyltransferase B [Dehalobacter sp.
CF]
gi|409021173|gb|AFV03204.1| Ribosomal RNA small subunit methyltransferase B [Dehalobacter sp.
DCA]
gi|409024160|gb|AFV06190.1| Ribosomal RNA small subunit methyltransferase B [Dehalobacter sp.
CF]
Length = 471
Score = 214 bits (544), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 164/478 (34%), Positives = 250/478 (52%), Gaps = 55/478 (11%)
Query: 65 AVRLM-RIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTI 123
AVR++ R++ GA+A+LL + + SG + RD L T +V G +
Sbjct: 29 AVRILTRVEKEGAYANLL-LRSQLSGLTQ----------------SRDRNLATALVNGVL 71
Query: 124 RWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVA 182
+ + LD+ L H K S++ + +LR G ++I+ +D +P A V+E+V L
Sbjct: 72 KNKLTLDY--ALRKHLNKPMSALPQEVRAVLRTGVFQILLMDRVPVPAAVNESVDLMN-Q 128
Query: 183 LRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLG 242
L LVN +LRK N P K E R L+ YSHP WM++RW G
Sbjct: 129 LNRTYSPLVNSVLRKAAETGWNFEWPDQKKE-----TVRYLSVRYSHPEWMIKRWLARWG 183
Query: 243 QEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV------PHELSLHLDEF 296
QEE L+ NN S+R N+ K TR +L L +++V P SL L +F
Sbjct: 184 QEETEALLKANNEPSLTSIRVNTLK-TTRQELKTLLESQEIEVADGEYTPE--SLILKDF 240
Query: 297 IRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASC 356
GL + + + G AVQD+S+ L ++ + G S++D C+APGGKT ++A
Sbjct: 241 ----GGLDQLWE---FQNGYFAVQDQSSQLAAHLLGAREGDSVLDVCSAPGGKTTHLAQL 293
Query: 357 LSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPC 416
+ +G + A+D+ +L ++ E+A+ + ++I+T+ D R + K D+VL+DAPC
Sbjct: 294 MKNKGTIVAVDMYPQKLDLIKESAERLGI-TMIKTVEGDARIL-EGIGEKFDRVLVDAPC 351
Query: 417 SGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEER 476
SGLGVL KRADLRW +R +++ +L LQ +L A+ V+ GG LVYSTC+++PEEN E
Sbjct: 352 SGLGVLRKRADLRWQKREDEISKLPELQLAILLKAADHVREGGELVYSTCTMEPEENFEV 411
Query: 477 VEAFLLRHPEFSIDPADGLVPSDFVT--------KHGFFFSDPIKHSLDGAFAARLVR 526
V+AF PEF G +P F + G + P H++DG F A+ R
Sbjct: 412 VKAFRQLKPEFVSVDLSGSLP--FAAEERDLKQLRKGVWQILPHHHNMDGFFIAKFRR 467
>gi|354565440|ref|ZP_08984615.1| sun protein [Fischerella sp. JSC-11]
gi|353549399|gb|EHC18841.1| sun protein [Fischerella sp. JSC-11]
Length = 491
Score = 214 bits (544), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 159/499 (31%), Positives = 245/499 (49%), Gaps = 50/499 (10%)
Query: 54 NLEVSPHRAVSAVRLMRIQFGGAFADLLNKK--GKGS-GDNEMGYVERTLGFRTKDLDDR 110
N +SP R ++ + L + GA+AD+ + K D+E+G K + DR
Sbjct: 8 NQNISP-RQLAFIALREVH-KGAYADVALDRVLAKADIADSEVG---------AKMVSDR 56
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPL-LLQILRIGFYEIVKLD-MPP 168
RLVT++V G R +R LD ++ L K S +P L IL +G Y+++ + +PP
Sbjct: 57 --RLVTELVYGCTRRQRTLDAIVDQLA---KKKSHQQPKDLRTILHLGLYQLLYQERIPP 111
Query: 169 YAVVDENVRLAKVALRPGAGNLVNGILRKL--VLLKDNNSLPLPKLEGNDRAQARA---- 222
A V+ V+LAK G VNG+LR+ V+ ++ D + +
Sbjct: 112 SAAVNTTVQLAKENGFAGLAGFVNGLLRQFLRVMEEEVGRTGGGVTGNTDEIFSASPSLS 171
Query: 223 ---------------LATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRK 267
L ++S P W+++ W G E KL +W N P+ LR N
Sbjct: 172 FLTSFLQLPENPVERLGILHSFPDWIIQVWIDQFGVMETEKLCIWMNQTPAIDLRVNP-- 229
Query: 268 GVTRADL-VMQLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGL 326
RADL ++ L + + HL + +R+ + + +G ++QD SA L
Sbjct: 230 --LRADLETVEAALQAAGISCQRLSHLPQALRLLSHPGQIQNLPGFNQGWWSIQDSSAQL 287
Query: 327 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVN 386
V +DPQ + ++D CAAPGGKT ++A + G ++A D R+R L E + +
Sbjct: 288 VGHFLDPQIKEVVIDSCAAPGGKTTHIAELMQDTGKIWACDRTASRMRKLQENMQRLHLK 347
Query: 387 SVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDE 446
S+ I D R + D+VLLDAPCSGLG L + AD RW + + ++EL +LQ E
Sbjct: 348 SIEICI-GDSRNLSQFRN-SADRVLLDAPCSGLGTLHRHADARWRQTPDSVKELSVLQKE 405
Query: 447 LLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVP-SDFVTKHG 505
LL S VK GGVLVY+TC++ P ENE +E+FL +P++ I+ G V + T G
Sbjct: 406 LLSHTSTFVKEGGVLVYATCTLHPAENETVIESFLTENPDWKIETPSGNVSFHRYSTSQG 465
Query: 506 FFFSDPIKHSLDGAFAARL 524
+ P ++ +DG F RL
Sbjct: 466 WLKIVPHQYDMDGFFIVRL 484
>gi|157692254|ref|YP_001486716.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus pumilus
SAFR-032]
gi|157681012|gb|ABV62156.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus pumilus
SAFR-032]
Length = 447
Score = 213 bits (543), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 124/391 (31%), Positives = 220/391 (56%), Gaps = 18/391 (4%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
+ KDL D+D L+T++V GT++ + LD+++ K + P ++Q+LR+ Y++
Sbjct: 32 MKDKDLADQDKPLLTELVYGTLQNKLALDYMLAPFV---KKPQKVAPWVMQLLRMSLYQM 88
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
V L+ +P A + E V L K G +LVNG+LR + +P + + +
Sbjct: 89 VYLEKIPDRAAIHEAVELTKKRGHKGISSLVNGVLRSV------QREGVPAFD-DIKDPV 141
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
+ L+ SHP+W+V+ W + G E + + P +LR N R RA ++ L
Sbjct: 142 KRLSIETSHPLWLVQEWVQSYGFEATESMCRIHLVPPKQTLRVN-RIKTDRA--ALKQKL 198
Query: 281 LKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIV 340
L + EL ++ +++ G +++ +EG +QDES+ LV +DPQPG++++
Sbjct: 199 LDAGIETELGDLSEDALKLMKG--SIVSTPSFQEGYVTIQDESSMLVARALDPQPGETVL 256
Query: 341 DCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 400
D CAAPGGK+ ++A ++ +G + ++D+++ +++++ + AK + I D R
Sbjct: 257 DACAAPGGKSTHIAERMNDEGQIVSLDLHEHKVKLIKQAAKRLNLTQ-IEAKALDARKAK 315
Query: 401 DN-STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGG 459
D+ S D++L+DAPCSG GV+ ++ D+++ + ED L I+Q +L + L+KPGG
Sbjct: 316 DDYSEASFDRILIDAPCSGFGVIRRKPDMKYTKSPEDSARLAIIQQAILKETAPLLKPGG 375
Query: 460 VLVYSTCSIDPEENEERVEAFLLRHPEFSID 490
LVYSTC++DP EN++ + AFL H +F D
Sbjct: 376 TLVYSTCTMDPSENQQVIHAFLQEHQDFEPD 406
>gi|338813384|ref|ZP_08625513.1| 16S rRNA methyltransferase B [Acetonema longum DSM 6540]
gi|337274743|gb|EGO63251.1| 16S rRNA methyltransferase B [Acetonema longum DSM 6540]
Length = 450
Score = 213 bits (543), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 146/426 (34%), Positives = 223/426 (52%), Gaps = 18/426 (4%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
+ L ++D R +T++V GT++ + L+ L+ C ++ + P++ ILR+G Y++ L
Sbjct: 32 QTLSNQDRRFMTELVYGTVKAQNTLNWLLSHYC--SRSLDKISPVIRNILRMGIYQLFFL 89
Query: 165 D-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARAL 223
D +P A ++ V L K G VN +LR D P P + + L
Sbjct: 90 DRIPVSAACNQAVELTKKYGHAGTVKFVNAVLRNAARTLDKPVYPDPANHPD-----QYL 144
Query: 224 ATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKL 283
+ Y HP WM+ RW G +L NN P SLR N+ K ++R DL+ +L
Sbjct: 145 SLRYYHPEWMIERWLTRYGFAFCEELCASNNLTPPLSLRTNTLK-ISRDDLLDRLT--AE 201
Query: 284 QVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCC 343
Q S E + V T + L+EGL VQDES+ LV V+ PQPG+ I+D C
Sbjct: 202 QATATPSDWTPEGL-VCTEHPALASMPSLQEGLFQVQDESSMLVAHVLGPQPGEFIIDAC 260
Query: 344 AAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS 403
APGGK+ ++A+ ++ G V A D+ + +L ++ E AK ++ + T D
Sbjct: 261 GAPGGKSTHIAALMNNSGKVLATDLYEHKLALIRENAKRLGIH-CLETRQMDAVKLNSLY 319
Query: 404 TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463
+ D+VL+DAPCSGLGVL ++ D RW + + + L LQ +L +++ VKPGG+LVY
Sbjct: 320 KNQADRVLVDAPCSGLGVLRRKPDSRWRKNEKLLRALPDLQSAILHSSADCVKPGGILVY 379
Query: 464 STCSIDPEENEERVEAFLLRHPEFSIDPADGLVP---SDFVTKHGFFFSDPIKHSLDGAF 520
STC+I+PEEN++ V FL +F ++ A L+P + K F P +DG F
Sbjct: 380 STCTIEPEENQDVVNGFLASRRDFVLEHAGRLMPVPRPEQPEKMMQLF--PHIDGVDGFF 437
Query: 521 AARLVR 526
ARL R
Sbjct: 438 IARLRR 443
>gi|15895002|ref|NP_348351.1| rRNA methylase [Clostridium acetobutylicum ATCC 824]
gi|337736943|ref|YP_004636390.1| rRNA methylase [Clostridium acetobutylicum DSM 1731]
gi|384458450|ref|YP_005670870.1| rRNA methylase, SUN family [Clostridium acetobutylicum EA 2018]
gi|15024692|gb|AAK79691.1|AE007682_1 Predicted rRNA methylase, SUN family [Clostridium acetobutylicum
ATCC 824]
gi|325509139|gb|ADZ20775.1| rRNA methylase, SUN family [Clostridium acetobutylicum EA 2018]
gi|336293086|gb|AEI34220.1| rRNA methylase [Clostridium acetobutylicum DSM 1731]
Length = 441
Score = 213 bits (542), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 136/432 (31%), Positives = 234/432 (54%), Gaps = 25/432 (5%)
Query: 101 GFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYE 160
+ +++ +D LVT+IV GTI+++ +D +I + + ++ +L +LR+ Y+
Sbjct: 29 ALKGEEISSKDKGLVTEIVYGTIKYKYSIDIIISKFVKTK--INKIDKRVLNVLRMSIYQ 86
Query: 161 IVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLE-GNDRA 218
I LD +P +A V+E V + K + + VN +LR N L P + N
Sbjct: 87 IRYLDKIPDFAAVNEAVNITKKYISLKSSKFVNAVLR--------NYLRNPNIAFYNKDN 138
Query: 219 QARALATIYSHPVWMVRRWTKYLGQ--EEAIKLMVWNNSDPSFSLRANSRKGVTRADLVM 276
L YS WMV+ + K EE +K + N +PS ++R N R + +L
Sbjct: 139 SVEKLCFNYSFEPWMVKFFLKQYKNKAEEILKGL---NENPSITIRVN-RLKTSHKELWN 194
Query: 277 QLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPG 336
+L KL E L + IR+K G ++ L G VQDESA LV +D +
Sbjct: 195 ELE--KLDYNIEEGYILKDAIRIKKG-HSIENNPLFVRGEFTVQDESAMLVSECMDIKEN 251
Query: 337 QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADL 396
I D C+APGGKT +M L G +YA D+++ +++++NE AK V ++ ++ D
Sbjct: 252 LVIFDMCSAPGGKTTHMGELLKNTGTIYAFDLHESKIKLINENAKRLGVENINASV-LDA 310
Query: 397 RTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVK 456
++ D+ K D++L+DAPCSGLG++ K+ +++WN+ ++D++EL +Q +L ASL +K
Sbjct: 311 SSYHDDFVNKADRILVDAPCSGLGIIRKKPEIKWNKNIKDLKELSDIQKNILQNASLYLK 370
Query: 457 PGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPAD-GLVPSDFVTKHGFFFSDPIKHS 515
G+L+YSTC+++ +ENE+ + FL +P F ++P + G P+ + +G P ++
Sbjct: 371 KEGILLYSTCTLNKDENEKSIIQFLKNNPNFKVEPIEFGEFPNLIYSPYGVTIL-PNEY- 428
Query: 516 LDGAFAARLVRA 527
+DG F +L +
Sbjct: 429 MDGFFMCKLKKT 440
>gi|389580156|ref|ZP_10170183.1| ribosomal RNA small subunit methyltransferase RsmB [Desulfobacter
postgatei 2ac9]
gi|389401791|gb|EIM64013.1| ribosomal RNA small subunit methyltransferase RsmB [Desulfobacter
postgatei 2ac9]
Length = 457
Score = 213 bits (542), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 144/428 (33%), Positives = 227/428 (53%), Gaps = 21/428 (4%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEK-TFSSMEPLLLQILRIGFYEIVKLD 165
L ++ L IV G R R +D LI H K F ++P + ILR+G ++IV LD
Sbjct: 39 LSQKNRGLCHAIVFGVFRHRGRIDQLIG---HCSKLAFDRIDPKVKTILRLGVFQIVFLD 95
Query: 166 -MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P +A +D ++ LAK A +N +LR + + + + LP L+ N LA
Sbjct: 96 RVPDFAAIDTSIELAKAICGKKASGFINAVLRNIS--RSHKKIALPCLDKNLPGH---LA 150
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQ 284
+S P W+ +RW G+E+ + L P +LR N RK +R +L+ N +
Sbjct: 151 AAFSIPSWLGKRWAARYGKEKTLTLAGALMDLPPLTLRVNPRKN-SREELIA--NFERAG 207
Query: 285 VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 344
+ +++ ++V+T + EGL +QDE+A L V V+ P+P ++I+D CA
Sbjct: 208 IKSQITRFSPLGLQVRTPGIAIPDLPGFNEGLFQIQDEAAQLAVQVLAPKPCENILDACA 267
Query: 345 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT--FADN 402
G KT +MA + +G + A D + + LN AK ++ +IRT H D+ F D
Sbjct: 268 GLGTKTCHMALEMGNKGNITANDTGERKAERLNTEAKRLNID-IIRTTHVDMAKAGFNDF 326
Query: 403 STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLV 462
S+ D+VL+DAPC+GLGVL++ D RW R+ D+ + LQ ++L+ ++ LVKPGGVLV
Sbjct: 327 SSY-FDRVLVDAPCTGLGVLARNPDSRWKRKPNDLIRMAALQQKILNGSANLVKPGGVLV 385
Query: 463 YSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGF--FFSD--PIKHSLDG 518
Y+ CS +PEE + ++ FL + +FS DP+ F + G F+ P +DG
Sbjct: 386 YAVCSCEPEETTQVIQRFLDKRKDFSPDPSGFEARLPFFCESGIKTFYKTTFPDHLEMDG 445
Query: 519 AFAARLVR 526
F AR+ R
Sbjct: 446 FFIARMRR 453
>gi|389573303|ref|ZP_10163378.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus sp. M 2-6]
gi|388427000|gb|EIL84810.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus sp. M 2-6]
Length = 442
Score = 213 bits (542), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 121/391 (30%), Positives = 217/391 (55%), Gaps = 18/391 (4%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
+ K+L D+D L+T++V GT++ + LD+++ K + P ++Q+LR+ Y++
Sbjct: 27 MKEKELSDQDKPLLTELVYGTLQNKLALDYMLTPFV---KKPQKVAPWVMQLLRMSLYQM 83
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
V L+ +P A + E V L K G +LVNG+LR + +P + +
Sbjct: 84 VYLEKIPDRAAIHEAVELTKKRGHKGISSLVNGVLRSV------QREGVPSFDAI-KDPV 136
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
+ L+ SHP+W+V+ W + G E A + + P +LR N K A +Q L
Sbjct: 137 KRLSIETSHPLWLVQEWVEAYGFEAAESMCRIHLVPPKQTLRVNQMKKNRTA---LQQEL 193
Query: 281 LKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIV 340
+ + EL ++ +++ G +++ +EG +QDES+ LV +DPQPG+ ++
Sbjct: 194 MDAGIETELGDLSEDALKLMKG--SIVSTPFFQEGFVTIQDESSMLVARALDPQPGEMVL 251
Query: 341 DCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 400
D CAAPGGK+ ++A ++ +G + ++D+++ +++++ + AK + I D R +
Sbjct: 252 DACAAPGGKSTHIAERMNDEGKIVSLDLHEHKVKLIKQAAKRLNLTH-IEAKALDARKAS 310
Query: 401 DN-STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGG 459
D+ D++L+DAPCSG GV+ ++ D+++ + ED L +Q +L + L+KPGG
Sbjct: 311 DHYDDASFDRILIDAPCSGFGVIRRKPDMKYTKSSEDSARLATIQQSILHETAQLLKPGG 370
Query: 460 VLVYSTCSIDPEENEERVEAFLLRHPEFSID 490
LVYSTC++DP EN++ + AFL H +F D
Sbjct: 371 TLVYSTCTMDPTENQQVIHAFLQEHQDFEPD 401
>gi|295696042|ref|YP_003589280.1| sun protein [Kyrpidia tusciae DSM 2912]
gi|295411644|gb|ADG06136.1| sun protein [Kyrpidia tusciae DSM 2912]
Length = 486
Score = 213 bits (542), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 163/463 (35%), Positives = 241/463 (52%), Gaps = 48/463 (10%)
Query: 23 SKQAASTRKPRTSISTKKRAKVSPSRRTQ-NLNLEVSPHRAVSAVRLMRIQFGGAFADLL 81
++ A R PR +S + A VSP+RR + L V RA S + L ++ L
Sbjct: 5 ARAANPVRDPRRRVSGRAGA-VSPARRGAFEVLLLVEERRAYSHIALRQV---------L 54
Query: 82 NKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEK 141
N+ G D RD L T+IV GT+RW+R+LD I
Sbjct: 55 NRLGA---------------------DRRDSALATEIVQGTLRWQRWLDEQIN--AKSRI 91
Query: 142 TFSSMEPLLLQILRIGFYEIVKL-DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVL 200
+ ++ ++ LR+ Y++ KL P+AVV++ V L K +P A + VNG+LR L
Sbjct: 92 PIARLDAVVRVTLRMAVYQLYKLRHCAPHAVVNDAVELVK-GTQPRAASYVNGVLRALER 150
Query: 201 LKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFS 260
+ S P N LA SHP WMV RW +LG E I L NN P +
Sbjct: 151 EQQTPSPPRAARSRNAPGNPEELARRTSHPTWMVERWWSWLGPEATIALCESNNEPPPLT 210
Query: 261 LRANS-RKGVTRADLVMQLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAV 319
LR N R V VM+ ++ + S + +RV +G+ +V + + G C+V
Sbjct: 211 LRVNLLRSSVAE---VME-SVREAGGEGRPSPVIPGVLRV-SGV-DVSRLSTFRSGACSV 264
Query: 320 QDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNET 379
QDESA L + P+PG ++D CAAPGGK+ ++A + G G V A+DI+ ++ ++ T
Sbjct: 265 QDESATLAAWTLQPEPGWEVLDLCAAPGGKSAHLAEWMKGTGRVTAVDIHPHKIPLIERT 324
Query: 380 AKLHQVNSVIRTIHADLRTFADNSTVKC-DKVLLDAPCSGLGVLSKRADLRWNRRLEDME 438
A+ + +V + AD R D ++ D L+DAPCSGLGVL +R +L+W RR ED++
Sbjct: 325 ARRLGLPNV-HPVCADGR---DAPSLGIFDAALVDAPCSGLGVLRRRPELKWRRRPEDIQ 380
Query: 439 ELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFL 481
+L LQ ELL AA+ ++P G+LVY+TC++ EN+ VEAFL
Sbjct: 381 DLVKLQGELLAAAARALRPDGILVYATCTVCEAENDGVVEAFL 423
>gi|374607065|ref|ZP_09679871.1| 16S rRNA methyltransferase B [Paenibacillus dendritiformis C454]
gi|374387337|gb|EHQ58853.1| 16S rRNA methyltransferase B [Paenibacillus dendritiformis C454]
Length = 445
Score = 213 bits (541), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 141/441 (31%), Positives = 226/441 (51%), Gaps = 22/441 (4%)
Query: 96 VERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILR 155
+E + L+ D L T++V GTI+ +D ++ ++ + ++P + +LR
Sbjct: 10 LELNRALKEAQLERADAALATELVYGTIQRLNTIDGVLARKV--QRGLAKLKPWVRNLLR 67
Query: 156 IGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEG 214
+ Y++ LD +PP+A V+E V +AK + G VNG+LR ++++ P +G
Sbjct: 68 MTAYQLRYLDRVPPHAAVNEAVAIAKRRGQQAMGGFVNGVLR--AIMREPELWTAPPADG 125
Query: 215 NDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADL 274
+A +SHP W+V RW G+ E + NN P S R N R TR L
Sbjct: 126 ----PVSRIAWEHSHPEWLVARWIAAYGEAETAAMCAANNRPPHGSARVN-RLRSTREAL 180
Query: 275 VMQLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQ 334
+ ++ + +L D V G N+ + ++G +VQDES+ LVV + P+
Sbjct: 181 LAEMRADGYRA-ESSALSPDGI--VAAGAGNLAHSAWYRDGRLSVQDESSMLVVEALRPE 237
Query: 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHA 394
PG ++DCCAAPGGK+ ++A + G V A DI+ ++ ++ E A + S +R +
Sbjct: 238 PGMRVLDCCAAPGGKSTHIAERMGDMGEVTANDIHAHKVALIEEQAARLGLTS-MRVMSV 296
Query: 395 DLRTFADN-STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASL 453
D D VLLDAPC+G GV+ ++ D++W +R ED+ + LQ+ LL A+
Sbjct: 297 DAAELGQALPQASFDVVLLDAPCTGFGVIRRKPDIKWAKREEDVAAIASLQERLLTEAAR 356
Query: 454 LVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSID-------PADGLVPSDFVTKHGF 506
+V+PGG LVYSTC+++PEEN + V FL R P +++D P + L + + G
Sbjct: 357 MVRPGGRLVYSTCTVEPEENGDAVRRFLERTPGWTLDASWTSALPQNALDAALRRSPAGM 416
Query: 507 FFSDPIKHSLDGAFAARLVRA 527
P DG F A L RA
Sbjct: 417 LQVLPQDAGSDGFFIACLQRA 437
>gi|379012011|ref|YP_005269823.1| ribosomal RNA small subunit methyltransferase B [Acetobacterium
woodii DSM 1030]
gi|375302800|gb|AFA48934.1| ribosomal RNA small subunit methyltransferase B [Acetobacterium
woodii DSM 1030]
Length = 441
Score = 213 bits (541), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 130/459 (28%), Positives = 247/459 (53%), Gaps = 33/459 (7%)
Query: 68 LMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRR 127
L+++ + GA+++L E+ V + + L D D RL ++V G ++ +
Sbjct: 11 LLKVNYEGAYSNL-----------EIKSV-----LKNRFLKDEDRRLYLNLVYGCLQNQT 54
Query: 128 YLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPG 186
YLD++I + + + + +ILRI Y+I LD +P YA+V+E+V LA +P
Sbjct: 55 YLDYIIKQ--QSNRPVNKLHKEVSEILRIAIYQIYFLDKIPNYAIVNESVNLAN-EFQPQ 111
Query: 187 AGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEA 246
A +NG++R ++ + + K E D + ALA YS P+W+V ++ + G ++A
Sbjct: 112 AKGFINGVIRNIIRKTEKDGKDF-KFENWDN-EKEALAIRYSVPLWIVHKYYEIFGVKDA 169
Query: 247 IKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQ-VPHELSLHLDEFIRVKTGLQN 305
++ N P F++R N+ K T L+ + ++ V + S + + + N
Sbjct: 170 EAIIPMLNEKPPFTIRCNTMK-TTVDQLIKSIEKFGVEAVRGKYSSNAIQLANLGIFESN 228
Query: 306 VIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYA 365
+ + L +EG +QD++A + V +DP+PGQ ++D CAAPGGKT Y++ ++ +G + A
Sbjct: 229 IEEDSLYREGQFLIQDQAAMITVERLDPKPGQRVLDMCAAPGGKTTYLSQLMNNEGEIIA 288
Query: 366 IDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKR 425
D+ RL+++ + + ++I D F ++ DK+L+DAPC+GLGV+ ++
Sbjct: 289 RDVFPHRLKLIKQQLRRLGCTNIILE-DQDGTVFINDDQATFDKILVDAPCTGLGVIRRK 347
Query: 426 ADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHP 485
+++++ ED + L +Q+ LL+ A +KPGG L+YSTC+++ +ENE +++ ++++P
Sbjct: 348 PEIKYHHSKEDRKALVKIQEVLLENAVRYLKPGGELLYSTCTVNKDENENQIKKIIMKYP 407
Query: 486 EFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARL 524
E I P + + + ++ P+ D F L
Sbjct: 408 ELKIIPDE--------NGNDYTYTSPLMDGCDSFFMCLL 438
>gi|406981882|gb|EKE03270.1| hypothetical protein ACD_20C00225G0014 [uncultured bacterium]
Length = 445
Score = 212 bits (540), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 139/423 (32%), Positives = 213/423 (50%), Gaps = 31/423 (7%)
Query: 115 VTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPPYAVVDE 174
+T++V G ++ + LD I + K + + + LR+ YE+ L P YAV++
Sbjct: 38 LTNLVSGVVKHKLTLDFFIQNIS--AKKLNDLSYQVKNSLRLAVYELEYLHAPDYAVLNS 95
Query: 175 NVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMV 234
V L K +G VN +LR + + + + P + N A + YSHP WM+
Sbjct: 96 YVELVK-QYDKKSGAFVNAVLRNFI--RKRSEIHFPDAKDN---PVYAFSVKYSHPEWMI 149
Query: 235 RRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLD 294
RW G E+ K+ +NN P +R N+ K + + L+ + + +S D
Sbjct: 150 ERWIHNYGIEDTRKICKYNNLAPKLVIRVNTLK-------ISKEKLIDFFIHNNVSFFDD 202
Query: 295 EFI---RVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTL 351
+ + +V +EG VQ ES+ LV V+DPQ ++D CAAPGGKT
Sbjct: 203 RIVDECMIVHHHNSVKSIPGFEEGFWTVQSESSSLVSIVLDPQENGKVLDLCAAPGGKTT 262
Query: 352 YMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVL 411
++A+ ++ G + A+DIN RL + V SV + AD + S K D++L
Sbjct: 263 HIAALMNDTGEITAVDINPKRLEKVQNNCLRLGVKSV-KIKAADATKY--QSDKKYDRIL 319
Query: 412 LDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPE 471
+DAPCS GVL KR D RW + ED++ L ILQ E+L+ A+ LVK GG++VYSTCSI+PE
Sbjct: 320 IDAPCSNTGVLIKRIDARWKKSPEDIQNLAILQLEILNNAAKLVKSGGIIVYSTCSIEPE 379
Query: 472 ENEERVEAFLLRHPEFSIDPADGLVPSDFVTKH----------GFFFSDPIKHSLDGAFA 521
EN++ +E FL + +F D +P T G+F + ++DG F
Sbjct: 380 ENQQVIEKFLENNRDFQADKIMPYLPWKCETNENPLCSSEEDKGYFQILQSRQNIDGFFI 439
Query: 522 ARL 524
ARL
Sbjct: 440 ARL 442
>gi|86609413|ref|YP_478175.1| ribosomal RNA small subunit methyltransferase B [Synechococcus sp.
JA-2-3B'a(2-13)]
gi|86557955|gb|ABD02912.1| ribosomal RNA small subunit methyltransferase B [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 457
Score = 212 bits (540), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 163/474 (34%), Positives = 238/474 (50%), Gaps = 52/474 (10%)
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVG 120
R ++ + L +I+ A+ADL+ +G++ L D LV+++V
Sbjct: 4 RQLALLALQKIERQNAYADLV-----------LGHL-----LANSSLIPADRHLVSELVY 47
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLA 179
G R RR LD LI C ++ P L IL +G Y++ LD +P A + +V LA
Sbjct: 48 GITRRRRTLDALID--CLAQRPAHKQPPDLRLILHLGLYQLAFLDQIPASAAIHTSVELA 105
Query: 180 KVALRPGAGNL---VNGILR--KLVLLKDNNSLPLPKLEGNDRAQA-RALATIYSHPVWM 233
+ G G+L VNGILR + +L PL LE A +AL +S P W+
Sbjct: 106 RQM---GLGSLTGVVNGILRAYQRQVLDQPEKDPLKPLEDTLPADPIQALGIRHSFPDWL 162
Query: 234 VRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADL--VMQLNLLKLQVPHELSL 291
V W + LG E +L W N P LR N RAD+ V+Q L +P
Sbjct: 163 VSLWWERLGPVETEQLCAWFNQPPHLDLRVNP----LRADVNKVIQ-ALAAAGIPALPIS 217
Query: 292 HLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTL 351
+ +R++ ++ +G +VQD SA VV +DPQPG+ ++DCCAAPGGKT
Sbjct: 218 EVPGALRLQDHAGDITALPGFAQGWWSVQDASAQQVVHWLDPQPGERVIDCCAAPGGKTT 277
Query: 352 YMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF---ADNST---- 404
+A + +G ++A+D + RLR L E + ++S IR + DL + AD +
Sbjct: 278 QIAQHMQDRGEIWALDRHPHRLRRLEENRQRLGLSS-IRPLAIDLLSLSAAADRVSGTES 336
Query: 405 ---------VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLV 455
D+VLLDAPCSGLG L + AD RW + E + EL LQ +LL A+ +
Sbjct: 337 LPPAPLPPWQSADRVLLDAPCSGLGTLHRHADARWRQTPERIPELAHLQAQLLQVAARWL 396
Query: 456 KPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFS 509
KPGGVLVY+TC++ P ENEE ++AFL HP ++ + L+ + GFF
Sbjct: 397 KPGGVLVYATCTLHPAENEEIIQAFLDSHPNWAAEGDPLLIWPHRQDRDGFFIQ 450
>gi|308272081|emb|CBX28689.1| hypothetical protein N47_G40130 [uncultured Desulfobacterium sp.]
Length = 450
Score = 212 bits (539), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 139/430 (32%), Positives = 222/430 (51%), Gaps = 26/430 (6%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPL-----LLQILRIGFYEI 161
L R+ L +V G +RWR LD +I + FS P +L ILRIG ++I
Sbjct: 35 LPKREKALFNALVYGVLRWRSRLDWII-------RQFSKQPPEKTNTEILNILRIGLFQI 87
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
+ L+ +P A V+ +V +AK + VN +LR+ V ++ SL P + D+
Sbjct: 88 IHLNRIPVSAAVNTSVEIAKHTVGTKCSGYVNAVLRRTV--REYKSLCFPDM---DKKTE 142
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
++ S P WM++RW LG+ AI L N+ P ++R N+ K R +L+ +
Sbjct: 143 YGISVNKSFPEWMIKRWVSLLGKNSAIDLCDAINNIPPITVRVNTLK-TNRDELISCIES 201
Query: 281 LKLQV-PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSI 339
+ P + S F R K + + + K+G VQDE+A L ++DPQPG+ +
Sbjct: 202 ETQDIRPTDCSPGGVSFSRPK---ELISEMEAFKKGGFQVQDEAAQLAAFLMDPQPGEKV 258
Query: 340 VDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRL-RILNETAKLHQVNSVIRTIHADLRT 398
+D CA GGKT ++ + +G + AID +K +L R+ + +L N
Sbjct: 259 MDACAGLGGKTGHIGQLMENKGYITAIDKDKEKLFRLSLDMERLGITNVTTSAGDFGDPV 318
Query: 399 FADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPG 458
F + + K D++L+DAPCS +GV+ + D++W + + + Q LD ++L+KP
Sbjct: 319 FLKSYSGKFDRILIDAPCSNMGVIRRNPDIKWKLTEDKLLFYQKRQFLFLDNIAMLLKPA 378
Query: 459 GVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGL--VPSDFVTKHGFFFSDPIKHSL 516
G++VY+ CS + EENEE + FLL+HP+F+ID + FV GF + P H++
Sbjct: 379 GIIVYAVCSTETEENEEVINKFLLKHPDFTIDDMHCFPKIFEPFVNSDGFIRTYPHLHNM 438
Query: 517 DGAFAARLVR 526
DG F ARL R
Sbjct: 439 DGFFLARLKR 448
>gi|398818322|ref|ZP_10576914.1| ribosomal RNA small subunit methyltransferase RsmB [Brevibacillus
sp. BC25]
gi|398028090|gb|EJL21614.1| ribosomal RNA small subunit methyltransferase RsmB [Brevibacillus
sp. BC25]
Length = 448
Score = 211 bits (538), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 133/389 (34%), Positives = 213/389 (54%), Gaps = 21/389 (5%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
++L D LVT++V GTI+ + LDH++ ++K ++ + +LR+ Y+I L
Sbjct: 35 ENLSAVDAGLVTELVYGTIQRKLTLDHVLSHFVGNKK----VQTWVRNLLRLSLYQIHFL 90
Query: 165 D-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARAL 223
D +P A V + V +AK G ++VNG+LR N L P + RAL
Sbjct: 91 DRIPERAAVHQAVEIAKKRGHQGIASMVNGVLR--------NVLRQPDVWERQPKGGRAL 142
Query: 224 --ATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLL 281
A YSHP W+VR+W G+E I + NN P S+R N+ K T+ L+ +L
Sbjct: 143 QIAVAYSHPEWLVRQWLAVYGEETTIAICEANNRTPHSSVRVNASK-TTKDQLLDKLAEE 201
Query: 282 KLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVD 341
L+ + S I ++ G + + L KEG +QDES+ LV + +PG ++D
Sbjct: 202 GLE--GQASTVSPHAILMEGG--HAAGSRLFKEGYFTIQDESSMLVAPALAAEPGMRVLD 257
Query: 342 CCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD 401
CAAPGGKT ++A + +G + A D++ + ++ AK + ++I I +D +
Sbjct: 258 ACAAPGGKTTHIAEMMGNRGQIIASDVHAHKRDLIASAAKRLGI-TIIEPIVSDALDLPE 316
Query: 402 NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVL 461
+ D++LLDAPC+G GV+ ++ DL+WN+ ED+ + LQ ELL + ++ GGV+
Sbjct: 317 QALGTFDRILLDAPCTGFGVIRRKPDLKWNKTPEDVRAIAQLQYELLKTLASMLAQGGVM 376
Query: 462 VYSTCSIDPEENEERVEAFLLRHPEFSID 490
VYSTC+I+P EN+E V F+ HP+F +D
Sbjct: 377 VYSTCTIEPAENQEIVRRFVEEHPDFVLD 405
>gi|421858977|ref|ZP_16291226.1| tRNA and rRNA cytosine-C5-methylase [Paenibacillus popilliae ATCC
14706]
gi|410831496|dbj|GAC41663.1| tRNA and rRNA cytosine-C5-methylase [Paenibacillus popilliae ATCC
14706]
Length = 454
Score = 211 bits (538), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 147/456 (32%), Positives = 235/456 (51%), Gaps = 26/456 (5%)
Query: 80 LLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHD 139
L+ + +GS N +E + L+ D L T++V GTI+ +D ++
Sbjct: 4 LVRVEKEGSYSN----LELNRALKEAQLERADAALATELVYGTIQRLNTIDSVLARKV-- 57
Query: 140 EKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKL 198
++ + ++P + +LR+ Y++ LD +PP+A V+E V +AK + G VNG+LR +
Sbjct: 58 QRGLAKLKPWVRNLLRMTAYQLRYLDRVPPHAAVNEAVAIAKRRGQQAMGGFVNGVLRAV 117
Query: 199 VLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPS 258
+ + + L D A R +A +SHP W++ RW G+ E + NN P
Sbjct: 118 MREPELWTALLA-----DGAVNR-IAWEHSHPEWLIARWIAAYGEAETAAMCAANNRPPH 171
Query: 259 FSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCA 318
S R N +G TR L+ +L + E S + I V G N+ + + G +
Sbjct: 172 SSARVNRLRG-TREALLAELRADGYRA--EASALSPDGI-VAAGAGNLAHSAWYRAGRLS 227
Query: 319 VQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNE 378
VQDES+ LVV + P+PG I+DCCAAPGGK+ ++A + +G V A D++ ++ ++ E
Sbjct: 228 VQDESSMLVVEALRPEPGMRILDCCAAPGGKSTHIAERMGDRGEVTANDVHAYKVGLIEE 287
Query: 379 TAKLHQVNSVIRTIHADLRTFADN-STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDM 437
A + S + ++ D D VLLDAPC+G GV+ ++ D++W +R ED+
Sbjct: 288 QATRLGLTS-LHVMNVDAAELGQALPPASFDAVLLDAPCTGFGVIRRKPDIKWTKREEDV 346
Query: 438 EELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSID------- 490
+ LQ+ LL A+ +V+PGG LVYSTC+++PEEN + V FL R P +++D
Sbjct: 347 AAIAALQERLLTEAARMVRPGGRLVYSTCTVEPEENGDAVRRFLERSPGWALDASWTHAL 406
Query: 491 PADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARLVR 526
P D L + + G P DG F A L R
Sbjct: 407 PQDALDAALRRSPAGMLQVFPQDAGSDGFFIACLQR 442
>gi|224369793|ref|YP_002603957.1| protein RsmB [Desulfobacterium autotrophicum HRM2]
gi|223692510|gb|ACN15793.1| RsmB [Desulfobacterium autotrophicum HRM2]
Length = 455
Score = 211 bits (538), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 141/423 (33%), Positives = 214/423 (50%), Gaps = 19/423 (4%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
+ L RD L I+ GT+RW+ +LD LI ++ +EP + LR Y+ V +
Sbjct: 46 ESLAHRDRALANAIIYGTLRWKEHLDWLITPFS--KRPLDQIEPAICYTLRTALYQTVFM 103
Query: 165 DMPPYAVVDENVRLAKVAL-RPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARAL 223
D P + A L GA VN +LRK + ++P K + A +
Sbjct: 104 DKIPVSAAVNTAVNAAKKLSNTGAAGFVNAVLRKATTRYMDVAMPDSK-----KDPALFI 158
Query: 224 ATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL-LK 282
+ S P+W+ RRW + G + +I L+ N+ P +LRAN+ + RA L L ++
Sbjct: 159 SKSQSIPLWLSRRWIRRFGLDASIALLDAINTIPPITLRANTLR-TDRASLATALEPHVE 217
Query: 283 LQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 342
VP + H + + V + KEGL VQDE+ +V ++ PQPG+ I+D
Sbjct: 218 TIVP---TFHTPDGLSVTRPRTPLHLTTAFKEGLFQVQDEATQIVTTLLAPQPGERILDA 274
Query: 343 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRIL-NETAKLHQVNSVIRTIHADLRTFAD 401
CA GGKT +M ++ QG + A D++ +L +L NE +L N + + A L
Sbjct: 275 CAGLGGKTGHMGQIMNNQGKIEAWDLDARKLAVLGNEMKRLGITNVTTKQMDA-LDIDPA 333
Query: 402 NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVL 461
D+VL+DAPC+GLGVL + D RW R L D++ L LQ +L+ + LVKPGG+L
Sbjct: 334 ECNTPFDRVLVDAPCTGLGVLRRNPDARWRRTLGDIKRLADLQKRILNNLADLVKPGGIL 393
Query: 462 VYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFA 521
VY+ CS +PEENE ++ FL F++ P D ++ G F + P +DG FA
Sbjct: 394 VYAVCSCEPEENEGVIDWFLNNQKSFALVPQS----HDLASQDGIFKTYPHPLGMDGFFA 449
Query: 522 ARL 524
A +
Sbjct: 450 ATM 452
>gi|386714212|ref|YP_006180535.1| Sun protein [Halobacillus halophilus DSM 2266]
gi|384073768|emb|CCG45261.1| Sun protein [Halobacillus halophilus DSM 2266]
Length = 450
Score = 211 bits (536), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 145/460 (31%), Positives = 245/460 (53%), Gaps = 45/460 (9%)
Query: 79 DLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCH 138
DLL + G+ G +V ++L +D L+T+IV GT++ R +D+ +
Sbjct: 12 DLLTRIGEQGG---FSHVLLDREITKQELSRQDGALLTEIVYGTLQRRDLIDYYVQPFVA 68
Query: 139 DEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRK 197
+K ++P + +L + Y++ L+ +P +A++ E V ++K G + NG+LR
Sbjct: 69 KQK---KIKPWVRWLLYMSVYQMEFLERVPDHAIIHEAVEISKRRGHKGISSFTNGVLRS 125
Query: 198 LVL--LKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNS 255
+ L+ + + P LA SHP W+V+RW G+ ++ N
Sbjct: 126 VQRKGLRSLDEIEEP---------VERLAIETSHPAWLVKRWMDQYGRSITEEMCRANMQ 176
Query: 256 DPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEG 315
S+R + ++R + + QL +V E SL + + V G +++ L EG
Sbjct: 177 HLPLSVRVQPLR-ISRLEAMEQLREDGFKV--EESLLSPQGMVVSEG--QLLKHSLFTEG 231
Query: 316 LCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRI 375
+QD+S+ LV ++D + G +I+D C+APGGKT ++A + +G + A D++ + ++
Sbjct: 232 KVTIQDQSSMLVAEMMDLEKGMTILDACSAPGGKTTHIAEKMEDEGEIVAYDLHVKKAKL 291
Query: 376 LNETAKLHQVNSVIRTIHADLRTFAD-NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRL 434
+N+ A+ Q+ S I+ AD R AD + D++LLDAPCSGLGVL + D++++++L
Sbjct: 292 VNKKAEQLQLTS-IQASQADSRNLADLHEAASFDRILLDAPCSGLGVLRGKPDIKYHKQL 350
Query: 435 EDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDP--- 491
ED+ L+ +QDELLD + L+K GG LVYSTC++D ENEE V+ FL +HPEF++D
Sbjct: 351 EDVFSLRKIQDELLDRVAPLLKEGGKLVYSTCTVDRHENEEAVQHFLKQHPEFTVDHEFF 410
Query: 492 ---------ADG-------LVPSDFVTKHGFFFSDPIKHS 515
+ G + P DF T GFF + +K S
Sbjct: 411 NDLPEVTKGSKGQSDFGLQMFPQDFDTD-GFFLTRLVKQS 449
>gi|255101745|ref|ZP_05330722.1| ribosomal RNA small subunit methyltransferase [Clostridium
difficile QCD-63q42]
Length = 441
Score = 211 bits (536), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 134/429 (31%), Positives = 235/429 (54%), Gaps = 22/429 (5%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
F+ ++ D D L T+++ G I + YLD++I L + M + LR+G Y+I
Sbjct: 29 FKNLEISDMDRGLATELIYGVIENKYYLDYIINKLSKIK--VKKMSTYVKIFLRMGTYQI 86
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
+ LD + YA V+E V+L+K + +G +N ILR + K+ ++ +
Sbjct: 87 LFLDSISDYAAVNETVKLSKKYDKKSSG-FINAILRNEIRAKE------TIMDITEEDSV 139
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLN- 279
+ L+ YS+ W+++ W GQE A L+ NN PS +R N+ K ++R +L+ +L+
Sbjct: 140 KYLSIKYSYNSWIIKNWIDKFGQEFAEDLLEANNEKPSIYIRTNTLK-ISREELIEKLSE 198
Query: 280 --LLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQ 337
++ L+VP ++E I+V+ ++N+ + L K GL +QD S+ +V V++P+ G
Sbjct: 199 MGIVCLKVPM-----VEEAIKVEK-MKNIEKNELFKAGLFTIQDISSMIVGKVINPKEGS 252
Query: 338 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR 397
I+D C+APGGK+ ++A+ ++ G V A DI + +L+++N T + +V D
Sbjct: 253 FILDVCSAPGGKSTHLATLMNNTGQVVARDIFEHKLKLINSTVNRLGLKNVFVE-RFDAS 311
Query: 398 TFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKP 457
+NS K D VL D PCSG G++ ++ ++++ ++ E+++++ +Q ++L+ AS VK
Sbjct: 312 EIDENSISKFDYVLADVPCSGFGIIRRKPEIKY-KKEEELKDITSIQKKILENASKYVKV 370
Query: 458 GGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLD 517
GG LVYSTC+I EN V +F+ + F P D + G+ P H +D
Sbjct: 371 GGTLVYSTCTIQGVENINIVTSFVEENHNFEFVPIDTVNVDLDNQDKGYLKIYPNIHGID 430
Query: 518 GAFAARLVR 526
G F A+L R
Sbjct: 431 GFFIAKLKR 439
>gi|168186789|ref|ZP_02621424.1| ribosomal RNA small subunit methyltransferase B [Clostridium
botulinum C str. Eklund]
gi|169295225|gb|EDS77358.1| ribosomal RNA small subunit methyltransferase B [Clostridium
botulinum C str. Eklund]
Length = 443
Score = 210 bits (535), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 136/423 (32%), Positives = 230/423 (54%), Gaps = 17/423 (4%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+DD+D L+T+IV GTI+++ +D + L + +K S++ +L ILRI Y+I LD
Sbjct: 35 IDDKDKGLITEIVYGTIKYKYTIDTI--LNNYLKKGIKSLDSYVLNILRITVYQIKFLDK 92
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P +A V+E V +AK GA LVNG+LR N L K N+++ L
Sbjct: 93 IPNFAAVNEAVEIAKKQRSVGASKLVNGVLR-------NYLRNLDKKYYNEKSLVETLCF 145
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
YS+ W+V K G E A ++ N P+ ++R N+ K T D + NL
Sbjct: 146 KYSYDKWLVNMLIKQYGNEIAEDILKGLNERPAVTVRVNNLK--TDYDEAFK-NLEDYGY 202
Query: 286 PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAA 345
E E I + G +++ + L KEG VQDESA LV +D + G +++D C+A
Sbjct: 203 DVEEGYICPEAIVINKG-KSIEKNPLFKEGKITVQDESAMLVAPSIDAKEGATVLDLCSA 261
Query: 346 PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTV 405
PGGKT +++ ++ G+V A DI+ ++ ++ E AK +N+ I D F
Sbjct: 262 PGGKTTHISEIMNNTGIVKAFDIHDNKISLVKENAKRLGINN-IACAEMDACKFNKELEN 320
Query: 406 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465
D VL+D PCSGLG++ K+ ++++ + ++ +++ +Q ++++ A+ V+ G LVYST
Sbjct: 321 SADMVLIDVPCSGLGIIRKKPEIKYTKDVKSTKDIVAIQKKIMENAAKYVRKEGTLVYST 380
Query: 466 CSIDPEENEERVEAFLLRHPEFSIDP-ADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARL 524
C+I+ +ENE+ + F+ + PE+ ++P G + + + G P K+ +DG F A+L
Sbjct: 381 CTINKDENEKNINWFIKKFPEYKVEPLFYGNMNNIIYNEDGTVTILPNKY-MDGFFIAKL 439
Query: 525 VRA 527
+
Sbjct: 440 KKT 442
>gi|20807946|ref|NP_623117.1| tRNA and rRNA cytosine-C5-methylase [Thermoanaerobacter
tengcongensis MB4]
gi|254479565|ref|ZP_05092880.1| ribosomal RNA small subunit methyltransferase B [Carboxydibrachium
pacificum DSM 12653]
gi|20516516|gb|AAM24721.1| tRNA and rRNA cytosine-C5-methylases [Thermoanaerobacter
tengcongensis MB4]
gi|214034503|gb|EEB75262.1| ribosomal RNA small subunit methyltransferase B [Carboxydibrachium
pacificum DSM 12653]
Length = 443
Score = 210 bits (535), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 140/436 (32%), Positives = 233/436 (53%), Gaps = 32/436 (7%)
Query: 103 RTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIV 162
R ++ + D V ++V G I + LD ++ K + + LLL L +G Y+++
Sbjct: 30 RNDEVKEVDAAFVKELVYGVIERKYTLDFILSFFI---KKSADTKALLL--LEMGLYQLL 84
Query: 163 KLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQAR 221
+D +P YA ++E V +AK L + +N +LR + K+ P + +
Sbjct: 85 YMDKVPDYAAINETVEIAKKFLSKKGASFLNAVLRSYLREKEKVKFP------DKQNFPY 138
Query: 222 ALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLL 281
L YS+P W++ R+ K ++A KL+ N P S R N+ K ++ +L Q L
Sbjct: 139 YLKVTYSYPDWIIERFLKNFDADKAEKLLASLNEKPEISYRVNTLK-ISAEEL--QEKLK 195
Query: 282 KLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVD 341
+ + ++ +L+E + + L+N + K+GL QDE++ LV ++ PQ G+ I+D
Sbjct: 196 REDISYKKGYYLEEALYI--DLKNPESHPIYKDGLIHPQDEASMLVSRILSPQKGERILD 253
Query: 342 CCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD 401
CAAPGGKT +++ + G V A D++ RL+++ E + V +V + TF +
Sbjct: 254 VCAAPGGKTTHISQIMENTGEVVAFDLHPHRLKLIEENCRRLGVTNVKTEVFD--ATFVN 311
Query: 402 NSTV-KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKIL---QDELLDAASLLVKP 457
S + K D+VL D PC+G+G++ K+ D++ D EEL+ L Q +L ++SL VK
Sbjct: 312 ESYLEKADRVLADVPCTGIGIIRKKPDIKLKSY--DKEELRGLIERQYRILKSSSLYVKK 369
Query: 458 GGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPAD--GLVPSDFVTKH---GFFFSDPI 512
GGVLVYSTC+I EEN+E +E FL H F +PAD +P + K G+ + P+
Sbjct: 370 GGVLVYSTCTIGREENQEVIERFLKEHKNF--EPADISEDLPLNLKVKTSDLGYIQTTPL 427
Query: 513 KHSLDGAFAARLVRAF 528
+H +DG F A+L R +
Sbjct: 428 EHKIDGFFIAKLKRIY 443
>gi|254976172|ref|ZP_05272644.1| ribosomal RNA small subunit methyltransferase [Clostridium
difficile QCD-66c26]
gi|255315305|ref|ZP_05356888.1| ribosomal RNA small subunit methyltransferase [Clostridium
difficile QCD-76w55]
gi|255517973|ref|ZP_05385649.1| ribosomal RNA small subunit methyltransferase [Clostridium
difficile QCD-97b34]
gi|255651089|ref|ZP_05397991.1| ribosomal RNA small subunit methyltransferase [Clostridium
difficile QCD-37x79]
gi|260684154|ref|YP_003215439.1| ribosomal RNA small subunit methyltransferase [Clostridium
difficile CD196]
gi|260687813|ref|YP_003218947.1| ribosomal RNA small subunit methyltransferase [Clostridium
difficile R20291]
gi|306520940|ref|ZP_07407287.1| ribosomal RNA small subunit methyltransferase [Clostridium
difficile QCD-32g58]
gi|384361796|ref|YP_006199648.1| 16S rRNA methyltransferase B [Clostridium difficile BI1]
gi|423092611|ref|ZP_17080415.1| ribosomal RNA small subunit methyltransferase B [Clostridium
difficile 70-100-2010]
gi|260210317|emb|CBA64638.1| ribosomal RNA small subunit methyltransferase [Clostridium
difficile CD196]
gi|260213830|emb|CBE05814.1| ribosomal RNA small subunit methyltransferase [Clostridium
difficile R20291]
gi|357553481|gb|EHJ35228.1| ribosomal RNA small subunit methyltransferase B [Clostridium
difficile 70-100-2010]
Length = 441
Score = 210 bits (535), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 133/429 (31%), Positives = 235/429 (54%), Gaps = 22/429 (5%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
F+ ++ D D L T+++ G I + YLD++I L + M + LR+G Y+I
Sbjct: 29 FKNLEISDMDRGLATELIYGVIENKYYLDYIINKLSKIK--VKKMSTYVKIFLRMGTYQI 86
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
+ LD + YA V+E V+L+K + +G +N ILR + K+ ++ +
Sbjct: 87 LFLDSISDYAAVNETVKLSKKYDKKSSG-FINAILRNEIRAKE------TIMDITEEDSV 139
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLN- 279
+ L+ YS+ W+++ W GQE A L+ NN PS +R N+ K ++R +L+ +L+
Sbjct: 140 KYLSIKYSYNSWIIKNWIDKFGQEFAEDLLEANNEKPSIYIRTNTLK-ISREELIEKLSE 198
Query: 280 --LLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQ 337
++ L+VP ++E I+V+ ++N+ + L K GL +QD S+ +V V++P+ G
Sbjct: 199 MGIVCLKVPM-----VEEAIKVEK-MKNIEKNELFKAGLFTIQDISSMIVGKVINPKEGS 252
Query: 338 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR 397
++D C+APGGK+ ++A+ ++ G V A DI + +L+++N T + +V D
Sbjct: 253 FVLDVCSAPGGKSTHLATLMNNTGQVVARDIFEHKLKLINSTVNRLGLKNVFVE-RFDAS 311
Query: 398 TFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKP 457
+NS K D VL D PCSG G++ ++ ++++ ++ E+++++ +Q ++L+ AS VK
Sbjct: 312 EIDENSISKFDYVLADVPCSGFGIIRRKPEIKY-KKEEELKDITSIQKKILENASKYVKV 370
Query: 458 GGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLD 517
GG LVYSTC+I EN V +F+ + F P D + G+ P H +D
Sbjct: 371 GGTLVYSTCTIQDVENINIVTSFVEENHNFEFVPIDTVNVDLDNQDKGYLKIYPNIHGID 430
Query: 518 GAFAARLVR 526
G F A+L R
Sbjct: 431 GFFIAKLKR 439
>gi|443315650|ref|ZP_21045130.1| ribosomal RNA small subunit methyltransferase RsmB [Leptolyngbya
sp. PCC 6406]
gi|442784744|gb|ELR94604.1| ribosomal RNA small subunit methyltransferase RsmB [Leptolyngbya
sp. PCC 6406]
Length = 454
Score = 210 bits (534), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 164/480 (34%), Positives = 237/480 (49%), Gaps = 46/480 (9%)
Query: 58 SPHRAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTD 117
SP R ++ L I + G FAD++ + +++RT + D T+
Sbjct: 11 SPARRLAFAALKEI-YQGGFADVVLHR----------HLQRT------TISGPDRPFATE 53
Query: 118 IVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQI-LRIGFYEIVKLD-MPPYAVVDEN 175
+V G +R +R LD LI L + + +PL L+I L +G Y++ L +PP A V+ +
Sbjct: 54 LVYGIVRRQRTLDALIDQLGTKK---AQQQPLELRIVLHLGLYQLRYLSHVPPSAAVNTS 110
Query: 176 VRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVR 235
V L K P +VNGILR+ + L+ + PL L D A L +S P W+V
Sbjct: 111 VDLVKAIGLPRLSGVVNGILRQYLRLQGEGTDPL--LLPTDAIAA--LGIRHSFPDWLVA 166
Query: 236 RWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKG----VTRADLVMQLNLLKLQ-VPHELS 290
W + +G E L W N P+ LR +S + V A + +L +P L
Sbjct: 167 LWLEAIGPEATDALCDWLNQSPTIDLRVHSLRATVDTVEAAFTTAGIATTRLPGLPWALR 226
Query: 291 L--HLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGG 348
L H IR G N G VQD SA V +VDPQP Q ++D CAAPGG
Sbjct: 227 LVGHSGS-IREMPGYDN---------GWWTVQDASAQWVSYLVDPQPDQVVIDACAAPGG 276
Query: 349 KTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCD 408
K ++A+ + G ++A D RL+ + +T + S I T+ D T + D
Sbjct: 277 KAAHLAALMEDTGTIWACDRTPSRLKKIQQTCDRLGLKS-IHTLVGDSTTLTRFEG-QGD 334
Query: 409 KVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSI 468
+V++DAPCSGLG L + AD RW + E ++EL LQ LLD A+ VKPGG LVY+TC++
Sbjct: 335 RVIVDAPCSGLGTLHRHADARWRQTPETIQELVQLQQNLLDRAATWVKPGGTLVYATCTL 394
Query: 469 DPEENEERVEAFLLRHPEFSI-DPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARLVRA 527
P ENE +V FL HP++ I PA + G+ P + +DG F AR+ RA
Sbjct: 395 HPAENEAQVNRFLQTHPDWHILPPAPESSLAASTQPEGWVKIWPHEQGMDGFFMARMGRA 454
>gi|407977638|ref|ZP_11158475.1| 16S rRNA methyltransferase B [Bacillus sp. HYC-10]
gi|407415891|gb|EKF37472.1| 16S rRNA methyltransferase B [Bacillus sp. HYC-10]
Length = 447
Score = 210 bits (534), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 122/391 (31%), Positives = 217/391 (55%), Gaps = 18/391 (4%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
+ ++L D+D L+T++V GT++ + LD+++ K + P ++Q+LR+ Y++
Sbjct: 32 MKEQELSDQDKPLLTELVYGTLQNKLALDYMLTPFV---KKPQKVAPWVMQLLRMSLYQM 88
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
V L+ +P A + E V L K G +LVNG+LR + +P + +
Sbjct: 89 VYLEKIPDRAAIHEAVELTKKRGHKGISSLVNGVLRSV------QREGVPSFDAI-KDPV 141
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
+ L+ SHP+W+++ W + G E A + + P +LR N R RA L Q L
Sbjct: 142 KRLSVETSHPLWLIQEWVEAYGFEAAESMCRIHLVPPKQTLRVN-RMKTDRAAL--QQEL 198
Query: 281 LKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIV 340
+ + EL ++ +++ G +++ +EG +QDES+ LV +DPQPG+ +
Sbjct: 199 MDAGIETELGDLSEDALKLMKG--SIVATPFFQEGFVTIQDESSMLVARALDPQPGEMVF 256
Query: 341 DCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 400
D CAAPGGK+ ++A ++ +G + ++D+++ +++++ + AK + I D R +
Sbjct: 257 DACAAPGGKSTHIAERMNDEGKIVSLDLHEHKVKLIKQAAKRLNLTK-IEAKALDARKAS 315
Query: 401 DN-STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGG 459
D S D++L+DAPCSG GV+ ++ D+++ + ED L +Q +L + L+KPGG
Sbjct: 316 DAYSEASFDRILIDAPCSGFGVIRRKPDMKYTKSPEDAARLAAIQQAILHETAPLLKPGG 375
Query: 460 VLVYSTCSIDPEENEERVEAFLLRHPEFSID 490
LVYSTC++DP EN++ + AFL H +F D
Sbjct: 376 TLVYSTCTMDPIENQQVIHAFLQEHQDFEPD 406
>gi|403383389|ref|ZP_10925446.1| ribosomal RNA small subunit methyltransferase B [Kurthia sp. JC30]
Length = 452
Score = 209 bits (533), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 143/427 (33%), Positives = 229/427 (53%), Gaps = 28/427 (6%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+D +D L+T++ GT++++ LD+ + + ++ + +LR+ Y+I LD
Sbjct: 45 IDAKDRGLLTELTYGTLQYKLTLDYYL-----EPYVRGKLDTWVRWLLRLSLYQIAYLDK 99
Query: 166 MPPYAVVDENVRLAKVALRPGA-GNLVNGILRKLVL--LKDNNSLPLPKLEGNDRAQARA 222
+P +A V+E V +AK R G VNGILR ++ L++ + D AQ A
Sbjct: 100 IPDHAAVNEAVEIAKHRARHGGIAATVNGILRSILRNGLRETTDI-------KDTAQRIA 152
Query: 223 LATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLK 282
+ T SHP W+VRR+ G E +++ NN P ++R N+ K TR L L +
Sbjct: 153 IET--SHPEWLVRRYIDGFGVEVTEDMLIENNFPPLQTVRVNATKADTRGGLEA---LWE 207
Query: 283 LQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 342
+ S ++ E + V G QA +G+ +QDES+ L +D QPG + D
Sbjct: 208 EKYAVRRSENVPECLHVIEGQPARSQA--FADGIITIQDESSMLPAYALDVQPGMRVYDM 265
Query: 343 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN 402
CAAPGGKT ++A ++ +G + A D++K +++++ E A + S+I+T D R D
Sbjct: 266 CAAPGGKTTHIAEKMNNEGELIATDLHKHKIKLIQENADRLGL-SIIKTSVLDGRKATDE 324
Query: 403 -STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVL 461
D++L+DAPCSGLGV+ ++ D+++ + ED L +Q +LLDAA L+KP G +
Sbjct: 325 FEAASFDRILVDAPCSGLGVIRRKPDIKYTKTEEDFASLHKIQVDLLDAAYELLKPQGKM 384
Query: 462 VYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVT--KHGFFFSDPIKHSLDGA 519
VYSTC+ID EN VEAFL +HP+ + P + P V + G P + + DG
Sbjct: 385 VYSTCTIDKMENNGTVEAFLAKHPDMQLAPVEN-APEAAVGLREEGMMQVFPQQFNSDGF 443
Query: 520 FAARLVR 526
F A V+
Sbjct: 444 FVASFVK 450
>gi|389815939|ref|ZP_10207176.1| ribosomal RNA small subunit methyltransferase B [Planococcus
antarcticus DSM 14505]
gi|388465433|gb|EIM07750.1| ribosomal RNA small subunit methyltransferase B [Planococcus
antarcticus DSM 14505]
Length = 450
Score = 209 bits (533), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 132/419 (31%), Positives = 230/419 (54%), Gaps = 27/419 (6%)
Query: 114 LVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVV 172
L+T+I GT++ + LD+ + + +EP + +LR+ Y+IV LD +P +AVV
Sbjct: 48 LLTEITYGTLQHQMTLDYYL-----EPYLKGKIEPWVKTLLRLSLYQIVYLDRIPAHAVV 102
Query: 173 DENVRLAKVALRPGAGNLVNGILRKLVL--LKDNNSLPLPKLEGNDRAQARALATIYSHP 230
E V +AK G ++VNG+LR + ++ N++ P ++ SHP
Sbjct: 103 HEAVEIAKRRGHGGVASVVNGVLRSVQRNGVRSFNTISDP---------YEKISIETSHP 153
Query: 231 VWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELS 290
+WM+RRW + G E+ ++ + NN P ++R N+ RA + + +L+ + +S
Sbjct: 154 IWMIRRWAEQFGLEKTREMALENNKTPLQTVRVNT----ARATVEEVIEMLESEEVEAVS 209
Query: 291 LHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKT 350
L V T Q + ++G +QDES+ L + +PG +++D CAAPGGKT
Sbjct: 210 SKLIPECLVITNGQPA-RTATFEKGFITIQDESSMLPAYALQVKPGMTVLDMCAAPGGKT 268
Query: 351 LYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVKCDK 409
++A ++ G +YA+D+++ ++++++E A + +SVI TI D + + K D+
Sbjct: 269 THIAEKMNNNGTLYALDLHQHKVKLIDENA-VRLGHSVIETIVGDGKQSVERFGEEKFDR 327
Query: 410 VLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSID 469
+L+DAPCSGLGV+ ++ D+++ ++ ED L+ +Q ELLD A+ +K G+L+YSTC++D
Sbjct: 328 ILVDAPCSGLGVIKRKPDIKYTKKEEDFARLQEIQIELLDQAARSLKQEGILIYSTCTVD 387
Query: 470 PEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKH-GFFFSDPIKHSLDGAFAARLVRA 527
EN E FL HPE ++ +P+ K+ GF P + DG F A ++
Sbjct: 388 AVENRGTAERFLKEHPE--MEKIQVALPASLGIKYTGFVQVFPQDYGSDGFFIAAFKKS 444
>gi|452992525|emb|CCQ96058.1| Ribosomal RNA small subunit methyltransferase B [Clostridium
ultunense Esp]
Length = 446
Score = 209 bits (531), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 150/474 (31%), Positives = 239/474 (50%), Gaps = 46/474 (9%)
Query: 61 RAVSAVRLMRIQFGGAFADL-LNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIV 119
R + LM I+ GA+++ +NK F ++D +D L+ ++V
Sbjct: 4 REIGLKILMDIKLKGAYSNYAINK------------------FLKDEMDVKDENLIRELV 45
Query: 120 GGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRL 178
G + YLDH+I L + ++P +L+ILR+G Y+I ++ +P A V+E V L
Sbjct: 46 YGVVENCLYLDHIISKLS--KVKIKKIQPAILEILRMGVYQIAFMEKIPDRAAVNEAVIL 103
Query: 179 AKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWT 238
+K GA VNG+LR N L +E ++ L+ +YSHP WMV RW
Sbjct: 104 SKKYGYKGASGFVNGVLRNF----SRNKESLMMVE--EKNPITYLSIMYSHPKWMVERWV 157
Query: 239 KYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFIR 298
G E KL NN+ P ++R N K +R L+ L+ + ++ ++ +
Sbjct: 158 DEYGYEFTEKLCRENNNKPRLNIRVNRLK-TSREQLMDSLS------DYGYMVYKTKYAK 210
Query: 299 VKTGLQNVIQAGLLKE---GLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMAS 355
+ N I+ +KE G +QDES+ LV + +P+ ++D C+APGGK+ +M
Sbjct: 211 DGIIVDNPIRITEVKEFKLGHFTIQDESSMLVSQIANPKEDSLVLDLCSAPGGKSTHMGE 270
Query: 356 CLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTV-KCDKVLLDA 414
+ +G + + DI +L ++ E ++ + I L D S V K D +LDA
Sbjct: 271 LMGNKGRIISRDIYDHKLDLVRENFGRLGIDIIEIEIFNALDL--DKSMVGKVDYCILDA 328
Query: 415 PCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENE 474
PCSGLG++ ++ D++WNR+ ED+ LK +Q +L+ A V+PGG ++YSTC+I EEN
Sbjct: 329 PCSGLGIIRRKPDIKWNRKEEDIRGLKEIQINILNIAKHYVRPGGTIIYSTCTIGREENV 388
Query: 475 ERVEAFLLRHPEFSI----DPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARL 524
+ V FL + EF + D D + D V K G+ P H DG F AR+
Sbjct: 389 DVVNEFLKDNKEFRLSGFEDSVDSIENIDTV-KDGYVQLFPHIHGTDGFFIARI 441
>gi|239826566|ref|YP_002949190.1| sun protein [Geobacillus sp. WCH70]
gi|239806859|gb|ACS23924.1| sun protein [Geobacillus sp. WCH70]
Length = 447
Score = 209 bits (531), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 133/388 (34%), Positives = 215/388 (55%), Gaps = 16/388 (4%)
Query: 104 TKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVK 163
T L +RD+RL+T+IV GTI+ R LD+ + K +E + +LR+ Y+++
Sbjct: 34 THRLSERDVRLLTEIVYGTIQRRDTLDYYLTPFL---KKARKLERWVRVLLRLTLYQVLY 90
Query: 164 LD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARA 222
LD +P A + E V +AK G +LVNG++R + + PL K+E D + A
Sbjct: 91 LDRIPDRAAIFEAVEIAKKRGHQGVASLVNGVMRAI---QRQGVPPLEKIE--DEVERLA 145
Query: 223 LATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLK 282
+AT SHP+W+V+RW + G EE ++ N P + R N+ + +T + + +L
Sbjct: 146 VAT--SHPLWLVKRWVEQYGLEETKRMCETNLLPPKQTARVNTAR-ITVEEAIDKLKQEG 202
Query: 283 LQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 342
++V L +E I+ K G N+ + G +QDES+ LV + P+ + ++D
Sbjct: 203 MEVV--LGEVAEEAIQAKRG--NLAHTDAFRRGWITIQDESSMLVARALGPKEHERVLDS 258
Query: 343 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN 402
CAAPGGK+ ++A ++ G V DI++ ++ ++ E AK Q+ ++ + R
Sbjct: 259 CAAPGGKSTHIAELMNNTGQVICADIHEHKVNLIEENAKRLQLTNISARVLDSRRLGEVF 318
Query: 403 STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLV 462
DK+L+DAPCSG GV+ ++ D+++ + D+ L LQ E+L A + L+K GG LV
Sbjct: 319 EREMFDKILVDAPCSGFGVIRRKPDIKYAKTEADIPSLVALQREILHAVAPLLKKGGTLV 378
Query: 463 YSTCSIDPEENEERVEAFLLRHPEFSID 490
YSTC+ID +ENE + FL HPEFS D
Sbjct: 379 YSTCTIDRDENEAVIAQFLDDHPEFSPD 406
>gi|169831743|ref|YP_001717725.1| sun protein [Candidatus Desulforudis audaxviator MP104C]
gi|169638587|gb|ACA60093.1| sun protein [Candidatus Desulforudis audaxviator MP104C]
Length = 452
Score = 209 bits (531), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 145/440 (32%), Positives = 222/440 (50%), Gaps = 40/440 (9%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCH----DEKTFSSMEPLLLQILRIG 157
FR LD T++ GT+R LD ++ D+ +S ILR+G
Sbjct: 35 FRPSKLDRA---FATELAYGTLRTLNTLDWIVSRYLQQPLGDQTVWSR------NILRLG 85
Query: 158 FYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGND 216
Y++ +D +P A E V LAK PG VNG+LR + KD P P+ +
Sbjct: 86 AYQLFYMDKVPAGAACFEAVELAKKYGTPGTARFVNGVLRNVARHKDELQFPDPETD--- 142
Query: 217 RAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVM 276
++ Y HP W+V+RW LG EE I L NN+ P ++R N+ + V R L +
Sbjct: 143 --LVTHISLKYFHPTWLVKRWLTELGPEETIALCQANNTIPPNTIRVNTLR-VDRDSLAV 199
Query: 277 QLNLLKLQV------PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAV 330
+L L V P L + G ++ ++GL +QDES+ LV
Sbjct: 200 RLEQEGLTVRKTRFAPEGLEI---------GGFVSMRALPSFQQGLFQIQDESSMLVAHA 250
Query: 331 VDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIR 390
V+P G I+D C+APGGKT ++A + +G++ A+DI++ +L+++++ + +++V
Sbjct: 251 VNPARGVRILDACSAPGGKTTHLAQLMENEGIIKALDIHQHKLKLVSDNCRRLGIDNV-E 309
Query: 391 TIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDA 450
T D R D VL+DAPCSGLGVL +R D RW + + L LQ+ +L
Sbjct: 310 TELLDARDLPGEFEGWADFVLVDAPCSGLGVLRRRPDARWRKEPGQITGLVRLQEAILAG 369
Query: 451 ASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKH---GFF 507
A+ V+ GGVLVYSTC+I EEN +V++FL HP+F ++ +P+ + G+
Sbjct: 370 AAQCVRAGGVLVYSTCTITYEENLGQVQSFLAHHPDFLLENLRPFLPAGLGEEQMARGYL 429
Query: 508 FSDPIKH-SLDGAFAARLVR 526
P H +DG F AR+ R
Sbjct: 430 EIFPHTHEGMDGFFIARMRR 449
>gi|392374946|ref|YP_003206779.1| Sun protein [Candidatus Methylomirabilis oxyfera]
gi|258592639|emb|CBE68948.1| Sun protein [Candidatus Methylomirabilis oxyfera]
Length = 467
Score = 209 bits (531), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 152/440 (34%), Positives = 227/440 (51%), Gaps = 44/440 (10%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L +D L T++ G +RW+ LD+L+ + ++ + ++P L ++LR+G Y+I+ L
Sbjct: 49 LSQQDRALATELTYGVLRWQGRLDYLLAAVT--DRPWDRVDPALRRLLRLGAYQILFLTR 106
Query: 166 MPPYAVVDENVRLA----KVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQAR 221
+P YA V+E V LA + L+P A VN ILR+L L+ + ++ P G+
Sbjct: 107 VPAYAAVNETVALAQDVMRSQLKPVAKAFVNAILRRL--LERHATIRFPDPSGDPVG--- 161
Query: 222 ALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLL 281
ALA +SHP W+V RW K LG EE L+ NN + S + +NL+
Sbjct: 162 ALAARWSHPSWLVARWLKRLGPEETEALLKANNDTSALS---------------VMVNLV 206
Query: 282 KLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQD------------ESAGLVVA 329
K Q P E+ L T + V A L +G A++D E+A L V
Sbjct: 207 KRQ-PEEVQERLTRIAGSVTPGRFVSGAFHLNDGAEALRDPAFADGWYFPMDEAAALPVL 265
Query: 330 VVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVI 389
+++PQPG ++D C+ GGKT + L GQG V A+D + R L E ++ V
Sbjct: 266 MLNPQPGDVVLDACSGGGGKTALLLGRLGGQGRVIALDPSARAHRRLREARTRLSLDRVF 325
Query: 390 RTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLD 449
+ AD R A T + D++L+DAPCSGLG L + + RW ++ + L LQ ELL
Sbjct: 326 -PVQADARQAAQLFTRQVDRILVDAPCSGLGTLRRHPERRWQQQEAGLAALARLQLELLH 384
Query: 450 AASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSD---FVTKHGF 506
+ +++PGG LVYSTCS++PEE + VE FL PEF G +P+ + G
Sbjct: 385 GVAPVLRPGGFLVYSTCSLEPEETDVVVETFLRDFPEFVAADTSGGLPATVAGLIDSKGA 444
Query: 507 FFSDPIKHSLDGAFAARLVR 526
+ P +H LDG +A RL R
Sbjct: 445 LRTWPHRHGLDGFYAIRLRR 464
>gi|433462308|ref|ZP_20419895.1| Sun protein [Halobacillus sp. BAB-2008]
gi|432188996|gb|ELK46138.1| Sun protein [Halobacillus sp. BAB-2008]
Length = 448
Score = 209 bits (531), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 145/456 (31%), Positives = 252/456 (55%), Gaps = 28/456 (6%)
Query: 79 DLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCH 138
DLL + G G +V +D +D L+T+IV GT++ R + + I
Sbjct: 12 DLLTRIGDQGG---FSHVLLDREINKQDFSRQDGGLLTEIVYGTLQRRDLIAYTIQPYIQ 68
Query: 139 DEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRK 197
+K ++P + +L + Y+++ L+ +P +A++ E V ++K G + +NG+LR
Sbjct: 69 KQK---KIKPWVRWLLYMSVYQMMFLERVPDHAIIHEAVEISKKRGHKGIASFMNGVLRN 125
Query: 198 LVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDP 257
+ + N L ++ D + A+ T SHP+W+V+RW + G+E + NN
Sbjct: 126 V---QRNGGRDLDEI--TDPVEKLAIRT--SHPLWLVKRWAEQYGEEVTEAMCEANNRHL 178
Query: 258 SFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLC 317
S+R + + R ++V +L L V E S + + V G +++ L EG
Sbjct: 179 PMSIRIQPLR-MDREEVVSRLEEDGLTV--EESQLSPQGLIVTGG--AILKHPLFAEGYV 233
Query: 318 AVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILN 377
VQD+S+ LV ++D G +++D C+APGGKT ++A ++ +G + A D+++ + +++
Sbjct: 234 TVQDQSSMLVAEMMDLASGMTVLDACSAPGGKTTHIAEKMADEGEILAYDLHEKKAKLVE 293
Query: 378 ETAKLHQVNSVIRTIHADLRTFADNSTVK-CDKVLLDAPCSGLGVLSKRADLRWNRRLED 436
+ AK Q+ S I AD R + + D++LLDAPCSGLGVL + D+++++ +D
Sbjct: 294 KKAKQLQLTS-ITAGQADSRKLGEKHAAEHFDRILLDAPCSGLGVLRGKPDIKYHKTEQD 352
Query: 437 MEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPA--DG 494
+ L+++QD+LLD + L+K GG LVYSTC++D ENEE V+ FL +HPEF +DP+ +
Sbjct: 353 IYSLRLIQDDLLDEMAPLLKSGGKLVYSTCTVDRHENEEAVKHFLSKHPEFRVDPSFKED 412
Query: 495 LVPS--DFV--TKHGFFFSDPIKHSLDGAFAARLVR 526
L P+ D + ++HG P + DG F RL++
Sbjct: 413 LPPALRDGIGLSEHGLQLF-PHEWDTDGFFLTRLIK 447
>gi|428773859|ref|YP_007165647.1| sun protein [Cyanobacterium stanieri PCC 7202]
gi|428688138|gb|AFZ47998.1| sun protein [Cyanobacterium stanieri PCC 7202]
Length = 464
Score = 208 bits (530), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 151/434 (34%), Positives = 224/434 (51%), Gaps = 36/434 (8%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQI-LRIGFYEIVKLD-MPP 168
D LV+++V G +R +R LD L+ L + +S +PL L+I L +G Y++ LD +PP
Sbjct: 43 DKGLVSELVYGIVRRKRTLDSLVNQLGTKK---ASRQPLPLRIILHLGLYQLRYLDKIPP 99
Query: 169 YAVVDENVRLAKVALRPGAGNLVNGILRKLV---LLKDNNSLP---LPKLEGNDRAQARA 222
A V+ +V LAK +VNGILR + ++D LP +PKL
Sbjct: 100 SAAVNTSVELAKANGLGKLSGVVNGILRSYIRKSAIEDPLVLPSELVPKL---------- 149
Query: 223 LATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLK 282
YS P W+V + K L +E KL+ W N P LR N+ K T N L
Sbjct: 150 -GVKYSFPDWIVEIFLKQLNVKETKKLLQWYNESPCLDLRVNTLKTSTEE----VKNFLD 204
Query: 283 LQ-VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVD 341
V E HL + +R+ + NV +GL +VQD SA LV + P G+++ D
Sbjct: 205 ADGVSCEFVPHLPQALRLSSA-GNVRNLKGFADGLFSVQDSSAQLVGHFLAPVRGETVFD 263
Query: 342 CCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSV-IRTIHADLRTFA 400
CAAPGGKT ++A + +G + A D RL + E + + SV +R + F
Sbjct: 264 ACAAPGGKTTHIAELMGDEGTIIACDNISSRLEKITENVQRLGLKSVQVREGDSSEWEFC 323
Query: 401 ------DNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLL 454
D+ CD++L+DAPCSGLG L KR D+RW ++ E ++EL Q +L +
Sbjct: 324 EEKDKCDHEMALCDRILIDAPCSGLGTLHKRPDIRWQQKPEKIKELAKKQLAILSNMAKG 383
Query: 455 VKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDF-VTKHGFFFSDPIK 513
VK G LVY+TC+++P ENEE +EAFL HP++ I + ++F +T G P +
Sbjct: 384 VKNNGCLVYATCTLNPMENEEVIEAFLESHPDWHIVTERNNLTANFSITLKGAIKIFPHR 443
Query: 514 HSLDGAFAARLVRA 527
H++DG F +L +
Sbjct: 444 HNMDGFFMIKLAKG 457
>gi|428771628|ref|YP_007163418.1| sun protein [Cyanobacterium aponinum PCC 10605]
gi|428685907|gb|AFZ55374.1| sun protein [Cyanobacterium aponinum PCC 10605]
Length = 455
Score = 208 bits (530), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 145/431 (33%), Positives = 226/431 (52%), Gaps = 21/431 (4%)
Query: 101 GFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQI-LRIGFY 159
G +K DR LV+++V G +R +R LD +I + +S +PL L+I L++G Y
Sbjct: 40 GLHSKSFQDR--ALVSELVYGIVRRKRTLDSIINQFASKK---ASQQPLKLRIILQLGLY 94
Query: 160 EIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRK-LVLLKDNNSLPLPKLEGNDR 217
+I LD +P A V+ +V LAK +VNGILR L D + L LP
Sbjct: 95 QIRYLDKIPASAAVNTSVELAKKNGLSKISGVVNGILRSYLRQSADGDPLILPS------ 148
Query: 218 AQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQ 277
+ L YS P W+V+ + ++ L+ W N+ LR N K + R +L Q
Sbjct: 149 DKIAYLGVKYSFPDWIVKLFIDQFSYQKTEALLDWFNNTHHIDLRTNIIK-INRENL--Q 205
Query: 278 LNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQ 337
LL+ + L L + +R+ + N+ K+GL +QD SA LV +++PQ G+
Sbjct: 206 NKLLENNIETFL-LKEAQGLRLSKAVGNIGNLEEFKQGLFTIQDASAQLVTHLLNPQAGE 264
Query: 338 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR 397
+I+D CAAPGGKT ++A + +G V AID RL + E A + + I D
Sbjct: 265 TIIDACAAPGGKTTHIAELMGDKGKVIAIDTYAKRLEKIKENATRLGL-TCIEVKEGDSS 323
Query: 398 TFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKP 457
+ + D+VL+D PCSGLG L D+RW ++ E++E+L LQ ++L AS VK
Sbjct: 324 ELTEWEN-QADRVLVDVPCSGLGTLHTNPDIRWRKKPEEIEKLTRLQQKILTNASKWVKN 382
Query: 458 GGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDF-VTKHGFFFSDPIKHSL 516
GG+LVY+TC+++ +ENE V FL HP++ +D + ++ + G P ++
Sbjct: 383 GGILVYATCTLNQKENENIVTEFLANHPQWQLDTKNNNFLDNYSLPSKGMIKIFPPDDNM 442
Query: 517 DGAFAARLVRA 527
DG F A+L++
Sbjct: 443 DGFFIAKLIKG 453
>gi|126700200|ref|YP_001089097.1| 16S rRNA methyltransferase B [Clostridium difficile 630]
gi|115251637|emb|CAJ69470.1| Ribosomal RNA small subunit methyltransferase B (rRNA
(cytosine-C(5)-)-methyltransferase) [Clostridium
difficile 630]
Length = 441
Score = 208 bits (530), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 133/429 (31%), Positives = 234/429 (54%), Gaps = 22/429 (5%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
F+ ++ D D L T+++ G I + YLD++I L + M + LR+G Y+I
Sbjct: 29 FKNLEISDMDRGLATELIYGVIENKYYLDYIINKLSKIK--VKKMSTYVKIFLRMGTYQI 86
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
+ LD + YA V+E V+L+K + +G +N ILR + K+ ++ +
Sbjct: 87 LFLDSISDYAAVNETVKLSKKYDKKSSG-FINAILRNEIRAKE------TIMDITEEDSV 139
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLN- 279
+ L+ YS+ W+++ W GQE A L+ NN PS +R N+ K ++R +L+ +L+
Sbjct: 140 KYLSIKYSYNSWIIKNWIDKFGQEFAEDLLEANNEKPSIYIRTNTLK-ISREELIEKLSE 198
Query: 280 --LLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQ 337
++ L+VP ++E I+V+ ++N+ + L K GL +QD S+ +V V++P+ G
Sbjct: 199 MGIVCLKVPM-----VEEAIKVEK-MKNIEKNELFKAGLFTIQDISSMIVGKVINPKEGS 252
Query: 338 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR 397
++D C+APGGK+ ++A+ ++ G V A DI + +L+++N T + +V D
Sbjct: 253 FVLDVCSAPGGKSTHLATLMNNTGQVVARDIFEHKLKLINSTVNRLGLKNVFVE-RFDAS 311
Query: 398 TFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKP 457
+NS K D VL D PCSG G++ ++ ++++ ++ E+++++ +Q ++L+ AS VK
Sbjct: 312 EIDENSISKFDYVLADVPCSGFGIIRRKPEIKY-KKEEELKDITSIQKKILENASKYVKV 370
Query: 458 GGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLD 517
GG LVYSTC+I EN V F+ + F P D + G+ P H +D
Sbjct: 371 GGTLVYSTCTIQDVENINIVTFFVEENHNFEFVPIDTVNVDLDNQDKGYLKIYPNIHGID 430
Query: 518 GAFAARLVR 526
G F A+L R
Sbjct: 431 GFFIAKLKR 439
>gi|114566754|ref|YP_753908.1| hypothetical protein Swol_1228 [Syntrophomonas wolfei subsp. wolfei
str. Goettingen]
gi|114337689|gb|ABI68537.1| conserved hypothetical protein [Syntrophomonas wolfei subsp. wolfei
str. Goettingen]
Length = 456
Score = 208 bits (530), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 144/480 (30%), Positives = 238/480 (49%), Gaps = 43/480 (8%)
Query: 57 VSPHRAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVT 116
V+ R ++A + + GAFA+L K R DL D L+T
Sbjct: 9 VNKARIMAAEIVYEVMERGAFANLALAKA----------------LRNSDLSAADRHLLT 52
Query: 117 DIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL-DMPPYAVVDEN 175
+IV GT+R ++LD ++ L H P LL ILR Y+++ L +P YA+V++
Sbjct: 53 EIVNGTVRMIKHLDWVLELFLHS--PIKKQNPYLLSILRTALYQLMFLAKVPDYALVNDA 110
Query: 176 VRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVR 235
V +++ + + N +LR ++ D P +D ++ YSHP W+V+
Sbjct: 111 VEISRQKMGAKMAGVSNAVLRNIIRKLDKIKYP------DDPVSFYSI--YYSHPDWLVK 162
Query: 236 RWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDE 295
W LG + L+ +NNS LR N K +R +L+ +L + V +LS
Sbjct: 163 LWLDTLGTQACETLLAYNNSRSRVVLRCNPLK-CSREELIDKLE--EEGVKAQLSPLTPW 219
Query: 296 FIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMAS 355
I V+ Q + + K+G +Q+E++ L A+++P G+ ++D C GGKT ++A
Sbjct: 220 GIVVEDNPQPIAETASFKKGYFYIQNEASMLAAAILNPPAGERVLDLCCGVGGKTTHLAE 279
Query: 356 CLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAP 415
++ QG V A++ +L +L + + + +++ + D+RT ++ VK +LLDAP
Sbjct: 280 YMNNQGEVLAVEFYAQKLELLRQNCQRLGL-GIVKDLEKDIRTL-NSKEVKARYLLLDAP 337
Query: 416 CSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEE 475
CSG GVL++RAD RW + E++ EL LQ + + A+ +V+ G L+Y+TC+I+ ENEE
Sbjct: 338 CSGWGVLNRRADARWRKNQEEINELTQLQAQFISHAATMVEKQGYLLYATCTINQAENEE 397
Query: 476 RVEAFLLRHPEFSID---------PADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARLVR 526
+E FL + F ++ P D P G P K+ DG F A L R
Sbjct: 398 IIEGFLEENQHFVLEGFLSKLSFFPLDK--PDKASANRGMLTLMPGKYGTDGMFYALLRR 455
>gi|56964082|ref|YP_175813.1| RNA-binding protein Sun [Bacillus clausii KSM-K16]
gi|56910325|dbj|BAD64852.1| RNA-binding protein Sun [Bacillus clausii KSM-K16]
Length = 447
Score = 207 bits (528), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 144/422 (34%), Positives = 220/422 (52%), Gaps = 38/422 (9%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
LD RD L+T++V GTI +R LD+ + K + +LL R+ Y++V LD
Sbjct: 37 LDKRDSGLLTELVYGTIARKRTLDYYLAPFLKSGKKRALWVDVLL---RLSVYQMVFLDR 93
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P AVV E V +A G LVNG+LR + LP ++ RA A
Sbjct: 94 IPDRAVVHEAVTIANKRGHKGISGLVNGVLRSI------QRQGLPNVDAIADPIERA-AV 146
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
SHP W++ RW G+++AI + NN P LR N R T A+LV L ++
Sbjct: 147 QTSHPQWLMARWMNQYGEDDAIAMANANNIPPEVCLRVN-RMKTTAAELVAHLGNEGVEA 205
Query: 286 PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAA 345
L D + +K G N K+GL QDE++ LV ++ P+ G ++D CAA
Sbjct: 206 ERS-KLLPDLAVIIKKG--NPFGGEAYKKGLFTAQDEASMLVAKLLGPEEGMDVLDACAA 262
Query: 346 PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTV 405
PGGKT ++A ++G G + A+D++ +++++ E A + + I T D RT +
Sbjct: 263 PGGKTTHIAEQMNGTGHILALDLHPHKVKLIAEQAARLGLEN-IETRAEDARTL--QTKK 319
Query: 406 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465
++VL+DAPC+G GV+ ++ D+RW++ +D++ + +Q +L AS VK GG LVYST
Sbjct: 320 HYNRVLVDAPCTGFGVIRRKPDIRWSKTEKDVKHIANVQAAILAHASQFVKQGGTLVYST 379
Query: 466 CSIDPEENEERVEAFLLRHPEFSIDP-----------ADG--------LVPSDFVTKHGF 506
C+I+ EENE +E FL HP+F + A+G ++P DF T GF
Sbjct: 380 CTIEKEENEHAIERFLDTHPQFETNERFYGRLPDHIQANGRFSPLGLTILPHDFGTD-GF 438
Query: 507 FF 508
F
Sbjct: 439 FM 440
>gi|433446078|ref|ZP_20410209.1| ribosomal RNA small subunit methyltransferase B [Anoxybacillus
flavithermus TNO-09.006]
gi|432000823|gb|ELK21715.1| ribosomal RNA small subunit methyltransferase B [Anoxybacillus
flavithermus TNO-09.006]
Length = 446
Score = 207 bits (528), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 132/391 (33%), Positives = 221/391 (56%), Gaps = 20/391 (5%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
T +L +D+ L+T++V GTI+ R LD+ + +EP + +LR+ Y++
Sbjct: 30 IETNELSAQDVALLTELVYGTIQRRDTLDYYLQPFIK-----GKIEPWVHLLLRMSLYQM 84
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
V LD +P AV+ E V +AK G +LVNGILR V + SL K D ++
Sbjct: 85 VYLDRIPDRAVLFEAVEIAKRRGHRGIASLVNGILRS-VQRQGLRSLDDIK----DESER 139
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
A+AT SHPVW+VRRW + G +E ++ NN P + R N + VT +++ +L
Sbjct: 140 LAIAT--SHPVWLVRRWIEQFGFDETKRMCEVNNFPPEQTARVNVMR-VTVEEVIDRLKE 196
Query: 281 LKLQ-VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSI 339
++ +P + I +K N + + +EGL +QDES+ LV + P +
Sbjct: 197 EGIEAIPSSIVP-----IGIKITKGNAAKTSVFREGLITIQDESSMLVAYALSPNETDVV 251
Query: 340 VDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF 399
+DCCAAPGGKT ++A ++ +G V A+DI+ +++++ + AK ++++ +
Sbjct: 252 LDCCAAPGGKTTHIAERMNNRGRVVALDIHDHKVKLIEQQAKRLGLSNIEAKQLDSRQAH 311
Query: 400 ADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGG 459
+T D++L+DAPCSGLGV+ ++ ++++ + +D+ +L +Q +L A + L+K GG
Sbjct: 312 TQFATETFDRILVDAPCSGLGVIRRKPEIKYAKNEKDITQLANVQLNILRAVAPLLKRGG 371
Query: 460 VLVYSTCSIDPEENEERVEAFLLRHPEFSID 490
LVYSTC++D EENE+ + FL HPE+ D
Sbjct: 372 TLVYSTCTVDREENEQVIAQFLAEHPEYDRD 402
>gi|456012702|gb|EMF46390.1| Ribosomal RNA small subunit methyltransferase B [Planococcus
halocryophilus Or1]
Length = 403
Score = 207 bits (528), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 126/413 (30%), Positives = 222/413 (53%), Gaps = 25/413 (6%)
Query: 114 LVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVV 172
++T+I GT++ + LD+ + + +EP + +LR+ Y+IV LD +P +AVV
Sbjct: 1 MLTEITYGTLQHQMTLDYYL-----EPYLKGKIEPWVKILLRLSLYQIVYLDRIPAHAVV 55
Query: 173 DENVRLAKVALRPGAGNLVNGILRKLVL--LKDNNSLPLPKLEGNDRAQARALATIYSHP 230
E V +AK G ++VNG+LR + ++ N++ P ++ SHP
Sbjct: 56 HEAVEIAKRRGHGGVASVVNGVLRSVQRNGVRSFNTISDP---------YEKISIETSHP 106
Query: 231 VWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELS 290
WM+RRW + G E+ ++ + NN P ++R N+ + + M + VP ++
Sbjct: 107 EWMIRRWAEQFGLEKTREMALENNKTPLQTVRVNTVRATVEEAIEMLESEELEAVPSKM- 165
Query: 291 LHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKT 350
+ E + V G + ++G +QDES+ L + +PG +++D CAAPGGKT
Sbjct: 166 --IPECLVVTNG--QPARTTTFEKGFITIQDESSMLPAYALQVEPGMTVLDMCAAPGGKT 221
Query: 351 LYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKV 410
++A + G +YA+D+++ ++++++E A+ + T+ ++ K D++
Sbjct: 222 THIAEKMKNSGTLYALDLHQHKVKLIDENAERLGHTVIESTVGDGKQSVERFGEEKFDRI 281
Query: 411 LLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDP 470
L+DAPCSGLGV+ ++ D+++ ++ +D L+ +Q ELLD A+ L+K G+LVYSTC++D
Sbjct: 282 LVDAPCSGLGVIKRKPDIKYTKKEQDFARLQEIQIELLDQAARLLKEDGILVYSTCTVDA 341
Query: 471 EENEERVEAFLLRHPEFSIDPADGLVPSDFVTKH-GFFFSDPIKHSLDGAFAA 522
EN E FL HPE ++ +P+ KH GF P + DG F A
Sbjct: 342 VENRGTAERFLKEHPE--MEKIQAALPATMGIKHTGFVQVFPQDYGSDGFFIA 392
>gi|197119890|ref|YP_002140317.1| 16S rRNA (5-methyl-C967)-methyltransferase [Geobacter bemidjiensis
Bem]
gi|197089250|gb|ACH40521.1| 16S rRNA (5-methyl-C967)-methyltransferase [Geobacter bemidjiensis
Bem]
Length = 448
Score = 207 bits (528), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 159/488 (32%), Positives = 253/488 (51%), Gaps = 64/488 (13%)
Query: 58 SPHRAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDL-DDRDLRLVT 116
+P RA + L+RI+ +FAD+L D+E+ +KD+ D L+T
Sbjct: 5 NPRRAAFDI-LLRIEKEKSFADILI-------DHEL----------SKDIIKGADRGLLT 46
Query: 117 DIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQI-----LRIGFYEIVKLD-MPPYA 170
++V G +R + LD++I FS P L++ LR+G Y+ LD +P A
Sbjct: 47 ELVYGVLRRQGTLDYII-------SQFSKQRPEKLELFVRLLLRLGIYQCFFLDRVPVSA 99
Query: 171 VVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQ--ARALATIYS 228
V+E V LAK L P A +N +LR +D + P DRA+ A LA YS
Sbjct: 100 AVNETVNLAK-ELAPRASGFINAVLRNADRGRDTIAYP-------DRAERPAEYLAARYS 151
Query: 229 HPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHE 288
HP W+ ++W LG E A +L + P ++R N+ + +TR +L+ +L V
Sbjct: 152 HPAWLAQQWCDQLGLEAAEELAAAMSEPPPLTVRVNTLR-ITREELIQRLA--GEGVSCS 208
Query: 289 LSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGG 348
+ + IR+ Q + + ++GL VQDES+ L + P G+ ++D CAAPGG
Sbjct: 209 ATSWSPDGIRLNQSGQ-ITRLPSFRDGLFTVQDESSQLAPLFLAPGKGERVLDACAAPGG 267
Query: 349 KTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCD 408
KT +A + G +YA D+N +LR++ ET +NSV RTF ++T +
Sbjct: 268 KTTQIAQLMQDSGEIYACDVNNKKLRLIKETCDRLGINSV--------RTFTMDATAPSN 319
Query: 409 --------KVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGV 460
++L+DAPCSGLGV+ + + +W++ +D+ +L Q +L+ ++P G
Sbjct: 320 AIKETTFHRILVDAPCSGLGVIRRNPEGKWSKSGDDLLQLARTQVSILENLCRYLEPKGT 379
Query: 461 LVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVP--SDFVTKHGFFFSDPIKHSLDG 518
++Y+TCS +ENE V++FL +HPEF ++ L P + T+ GFF S P + +DG
Sbjct: 380 ILYATCSTSVQENEYVVDSFLAQHPEFVVEDLRPLFPQYAPLFTERGFFRSWPHRDGMDG 439
Query: 519 AFAARLVR 526
F+ARL R
Sbjct: 440 FFSARLKR 447
>gi|423084336|ref|ZP_17072841.1| ribosomal RNA small subunit methyltransferase B [Clostridium
difficile 002-P50-2011]
gi|423088032|ref|ZP_17076417.1| ribosomal RNA small subunit methyltransferase B [Clostridium
difficile 050-P50-2011]
gi|357542641|gb|EHJ24683.1| ribosomal RNA small subunit methyltransferase B [Clostridium
difficile 002-P50-2011]
gi|357543560|gb|EHJ25577.1| ribosomal RNA small subunit methyltransferase B [Clostridium
difficile 050-P50-2011]
Length = 441
Score = 207 bits (528), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 132/429 (30%), Positives = 234/429 (54%), Gaps = 22/429 (5%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
F+ ++ D D L T+++ G I + YLD++I L + M + LR+G Y+I
Sbjct: 29 FKNLEISDMDRGLATELIYGVIENKYYLDYIINKLSKIK--VKKMSTYVKIFLRMGTYQI 86
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
+ LD + YA V+E V+L+K + +G +N ILR + K+ ++ +
Sbjct: 87 LFLDSISDYAAVNETVKLSKKYDKKSSG-FINAILRNEIRAKE------TIMDITEEDSV 139
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLN- 279
+ L+ YS+ W+++ W GQE A L+ NN PS +R N+ K ++R +L+ +L+
Sbjct: 140 KYLSIKYSYNSWIIKNWIDKFGQEFAEDLLEANNEKPSIYIRTNTLK-ISREELIEKLSE 198
Query: 280 --LLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQ 337
++ L+VP ++E I+V+ ++N+ + L K GL +QD S+ +V V++P+ G
Sbjct: 199 MGIVCLKVPM-----VEEAIKVEK-MKNIEKNELFKAGLFTIQDISSMIVGKVINPKEGS 252
Query: 338 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR 397
++D C+APGGK+ ++A+ ++ G V A DI + +L+++ T + +V D
Sbjct: 253 FVLDVCSAPGGKSTHLATLMNNTGQVVARDIFEHKLKLIKSTVNRLGLKNVFVE-RFDAS 311
Query: 398 TFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKP 457
+NS K D VL D PCSG G++ ++ ++++ ++ E+++++ +Q ++L+ AS VK
Sbjct: 312 EIDENSISKFDYVLADVPCSGFGIIRRKPEIKY-KKEEELKDITSIQKKILENASKYVKV 370
Query: 458 GGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLD 517
GG LVYSTC+I EN V +F+ + F P D + G+ P H +D
Sbjct: 371 GGTLVYSTCTIQDVENINIVTSFVEENHNFEFVPIDTVNVDLDNQDKGYLKIYPNIHGID 430
Query: 518 GAFAARLVR 526
G F A+L R
Sbjct: 431 GFFIAKLKR 439
>gi|304404144|ref|ZP_07385806.1| sun protein [Paenibacillus curdlanolyticus YK9]
gi|304347122|gb|EFM12954.1| sun protein [Paenibacillus curdlanolyticus YK9]
Length = 521
Score = 207 bits (528), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 125/387 (32%), Positives = 209/387 (54%), Gaps = 11/387 (2%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD 165
+L D L T++V GT++ R LDH + L K +EP +LQ+LR+ Y+++ LD
Sbjct: 97 ELSRADAGLATELVYGTLQRRLSLDHALSALA--AKGLGKLEPWVLQLLRLSAYQLLFLD 154
Query: 166 -MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P +A V+E V +AK G +VNG+LR L L+ + L + A +A
Sbjct: 155 RIPAHAAVNEAVAIAKRRGHSGISGMVNGMLRNL--LRRRDELAPEAAAESAARPALRIA 212
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQ 284
+S+P W+V RW G+ A ++ N+ P S+R N R TR + + L ++
Sbjct: 213 LRHSYPEWLVARWIAAYGEAAAEQICAAGNAPPHASIRVN-RLRATREEAIAILAESGIE 271
Query: 285 VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 344
+ L + I ++G +QDES+ LV P G +++DCCA
Sbjct: 272 AAKSAVSPAGVVAQRGGSLADTIG---FRDGRWTIQDESSMLVAQAARPAAGMTVLDCCA 328
Query: 345 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-S 403
APGGKT ++A + +G V A D++ + ++ + A+ + + + + D + S
Sbjct: 329 APGGKTTHLAELMGNEGRVIANDVHPHKQALIEQQAERLGL-TCVEAVTGDAAELGERYS 387
Query: 404 TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463
+ D VLLDAPCSGLGV++++ +++W + D+ E+ +Q +L++ + LVKP G LVY
Sbjct: 388 SESFDLVLLDAPCSGLGVIARKPEIKWTKSEGDIREIAAIQKKLINGVAGLVKPDGRLVY 447
Query: 464 STCSIDPEENEERVEAFLLRHPEFSID 490
STC+ID +EN+ ++ FL HPE+++D
Sbjct: 448 STCTIDRDENDRQISQFLKDHPEYTLD 474
>gi|134299563|ref|YP_001113059.1| sun protein [Desulfotomaculum reducens MI-1]
gi|134052263|gb|ABO50234.1| sun protein [Desulfotomaculum reducens MI-1]
Length = 453
Score = 207 bits (528), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 144/425 (33%), Positives = 216/425 (50%), Gaps = 29/425 (6%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPY 169
D T+IV G +R +D ++ ++ +S + ILR+G Y+I+ + +P
Sbjct: 41 DRAFATEIVYGVLRNLNTIDWVLAHFL--KQPLASQTVWIRNILRMGTYQIMFMPRVPDS 98
Query: 170 AVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSH 229
A +E+V LAK GA VNG+LR + + +SL P + A +A YSH
Sbjct: 99 AACNESVNLAKKYGHQGAPKFVNGVLRNVA--RQQHSLEFPD---SKEAPVDHIALKYSH 153
Query: 230 PVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQ----- 284
P W+V RW G E+ I L NN ++R N+ K ++R DL+ +L ++
Sbjct: 154 PTWLVERWLMQYGFEQTIALCQANNRPAPNTVRTNTLK-ISREDLMARLKAEGVEARETK 212
Query: 285 -VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCC 343
VP L+L F+ +T Q G + VQDES+ LV V++P G ++D
Sbjct: 213 FVPE--GLNLSGFLSYRT--LKSFQGGFFQ-----VQDESSMLVAHVLNPSSGAKVLDVA 263
Query: 344 AAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS 403
+APGGKT ++A + G + A DI +L ++ + + + S+ + AD R
Sbjct: 264 SAPGGKTTHLAQLMGDSGQIIAFDIYSHKLDLIMDNCRRLGIQSIQAEV-ADARDLHKKY 322
Query: 404 TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463
D VL+DAPCSGLGVL +R D RW + + + LQ E+L +A+ ++PGGVLVY
Sbjct: 323 QGWADYVLVDAPCSGLGVLRRRPDSRWRKDPSQLPGIVRLQKEILQSAAQCLRPGGVLVY 382
Query: 464 STCSIDPEENEERVEAFLLRHPEFSIDPADGLVP----SDFVTKHGFFFSDPIKHSLDGA 519
STC+I EEN VE FL HPEF + L+P + + G+ P H +DG
Sbjct: 383 STCTITKEENIGVVEEFLKNHPEFIMGDLRQLLPPGLDEEKSAEKGYIQLLPHVHGMDGF 442
Query: 520 FAARL 524
F ARL
Sbjct: 443 FIARL 447
>gi|393201779|ref|YP_006463621.1| tRNA and rRNA cytosine-C5-methylase [Solibacillus silvestris
StLB046]
gi|406664656|ref|ZP_11072431.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
isronensis B3W22]
gi|327441110|dbj|BAK17475.1| tRNA and rRNA cytosine-C5-methylase [Solibacillus silvestris
StLB046]
gi|405387504|gb|EKB46928.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
isronensis B3W22]
Length = 453
Score = 207 bits (528), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 138/424 (32%), Positives = 227/424 (53%), Gaps = 23/424 (5%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+D +D L+T++ GT++ + LD+ + ++ + +LR+ Y++ L
Sbjct: 44 IDAKDRGLLTELTYGTLQHKLTLDYYLEPFIR-----GKVDIWVRWLLRMSLYQMQYLTR 98
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P +A V+E V +AK G ++VNGILR +L + S L + + N+R LA
Sbjct: 99 IPAHAAVNEAVEIAKRRGHKGIASMVNGILRS-ILREGVRSTDLIE-DANER-----LAI 151
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
SHP W+V RW + G ++ ++++ NN P ++R N+ K L L + V
Sbjct: 152 ETSHPQWLVDRWVESYGYDKTREMLLENNIAPLQTVRVNTTKATVEQVLT---TLEREGV 208
Query: 286 PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAA 345
S ++ E + +++G + G + GL +QDES+ L V++PQPG ++D CAA
Sbjct: 209 KARRSEYIPECLHLESG--QAARTGAFRNGLITIQDESSMLPAKVLNPQPGMKVLDMCAA 266
Query: 346 PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-ST 404
PGGKT ++A + +G + A D++ +L ++ E +N +I T D R A
Sbjct: 267 PGGKTTHLAEVMKNEGSILATDLHPKKLDLIEENVARLGLN-IIETAPLDGRKAAGFLQK 325
Query: 405 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464
D +L+DAPCSGLGV+ ++ D+++ +R ED+E L+ +Q +L+ A L+K G LVYS
Sbjct: 326 EGYDAILVDAPCSGLGVMRRKPDIKYTKREEDLESLQTIQLSILNNAVQLLKQDGRLVYS 385
Query: 465 TCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKH--GFFFSDPIKHSLDGAFAA 522
TC++D ENE V+AFL HPE ++ P + L P+ K G P DG F A
Sbjct: 386 TCTVDRSENEGTVQAFLKEHPEMNLVPIENL-PTQLEAKQQDGMLQVFPQDIGSDGFFVA 444
Query: 523 RLVR 526
V+
Sbjct: 445 AFVK 448
>gi|312111726|ref|YP_003990042.1| sun protein [Geobacillus sp. Y4.1MC1]
gi|423720641|ref|ZP_17694823.1| ribosomal RNA small subunit methyltransferase B [Geobacillus
thermoglucosidans TNO-09.020]
gi|311216827|gb|ADP75431.1| sun protein [Geobacillus sp. Y4.1MC1]
gi|383365994|gb|EID43285.1| ribosomal RNA small subunit methyltransferase B [Geobacillus
thermoglucosidans TNO-09.020]
Length = 447
Score = 207 bits (527), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 137/391 (35%), Positives = 220/391 (56%), Gaps = 22/391 (5%)
Query: 104 TKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVK 163
T L +RD+RL+T+IV GTI+ R LD+ + K +E + +LR+ Y+++
Sbjct: 34 THRLSERDVRLLTEIVYGTIQRRDTLDYYLAPFL---KKARKLERWVRVLLRLTLYQVLY 90
Query: 164 LD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARA 222
LD +P A + E V +AK G +LVNG++R ++ PL +E D + A
Sbjct: 91 LDRIPDRAAIFEAVEIAKKRGHQGIASLVNGVMRAIL---RQGVPPLENIE--DEVERLA 145
Query: 223 LATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLK 282
+AT SHP W+V+RW + G E ++ N P + R N+ + +T A+ + +L
Sbjct: 146 VAT--SHPRWLVKRWVEQYGWMETKRMCETNLLPPKQTARVNTAR-ITIAETLDRLRQEG 202
Query: 283 LQVPH-ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVD 341
++V E++ E I+ K G N+ + G +QDES+ LV + P+ + ++D
Sbjct: 203 MEVSRGEVAA---EAIQAKKG--NLANTEAFRRGWITIQDESSMLVARALGPKEHERVLD 257
Query: 342 CCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSV-IRTIHADLRTFA 400
CAAPGGK+ ++A ++ G V DI++ ++ ++ E AK Q+ ++ RT+ D R
Sbjct: 258 SCAAPGGKSTHIAELMNNTGQVICADIHEHKVNLIEENAKRLQLTNISARTL--DSRRLG 315
Query: 401 DNSTVKC-DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGG 459
+ + DK+L+DAPCSG GV+ ++ D+++ + D+ L LQ E+LDA + L+K GG
Sbjct: 316 EVFERETFDKILVDAPCSGFGVIRRKPDIKYAKTEADISSLAALQREILDAVAPLLKKGG 375
Query: 460 VLVYSTCSIDPEENEERVEAFLLRHPEFSID 490
LVYSTC+ID EENE + FL HPEFS D
Sbjct: 376 TLVYSTCTIDHEENEAVIAQFLNDHPEFSPD 406
>gi|337287877|ref|YP_004627349.1| sun protein [Thermodesulfobacterium sp. OPB45]
gi|334901615|gb|AEH22421.1| sun protein [Thermodesulfobacterium geofontis OPF15]
Length = 460
Score = 207 bits (527), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 140/427 (32%), Positives = 221/427 (51%), Gaps = 22/427 (5%)
Query: 108 DDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMP 167
D+RD LV ++V G +R Y+D +I + M+ + ILR+ Y+I+ +P
Sbjct: 42 DERDRALVGELVNGVVRHLYYIDFVISRVSLH--PLEKMDVEVRNILRLSTYQIIYTRIP 99
Query: 168 PYAVVDENVRLAKVALR-PGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATI 226
+ E +++ R LVN IL K+ KDN LP P D L+
Sbjct: 100 ERVAIAEALKILSHRKRGDWIKGLVNAILHKIAENKDN--LPQPP----DFNPVFYLSIK 153
Query: 227 YSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVP 286
YS P WMV+RW G EE KL++ +N P +R N K V+R + + L K +VP
Sbjct: 154 YSFPEWMVKRWLDRFGFEETEKLLLASNERPPLVIRVNILK-VSRDNFLTFLQ--KEEVP 210
Query: 287 HELSLHLDEFIRVKTGLQ-NVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAA 345
+ + G + V + G +VQD ++ LV +++P+PG+ I+D CA
Sbjct: 211 SAKACPYSPAGIILDGFRGKVTELKAYHFGWISVQDSASQLVTFLLNPKPGEKILDACAG 270
Query: 346 PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADL-RTFADNST 404
GGKT ++A + +G+++A D+ RL L E + + + D+ +
Sbjct: 271 VGGKTTHIAELMQNRGIIWAFDLYPWRLEKLKENFQRLGLKEP-KVFQGDVVEELPKLNA 329
Query: 405 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464
D++L+DAPC+G GV+ K D++W R+ ED + Q LL+ S +KP G++VY+
Sbjct: 330 PLFDRILIDAPCTGTGVIRKHPDIKWARKEEDFINIPEKQLRLLEGLSPFLKPKGIMVYA 389
Query: 465 TCSIDPEENEERVEAFLLRHPEFSID-PADGLV----PS--DFVTKHGFFFSDPIKHSLD 517
TCS++PEENE+ +E FL +HPEF I+ P + L PS D + + + + P KH++D
Sbjct: 390 TCSLEPEENEKVIEKFLKKHPEFEIENPLNVLEKTCGPSVRDLIENNLYLKTYPHKHNMD 449
Query: 518 GAFAARL 524
G FA RL
Sbjct: 450 GFFAVRL 456
>gi|323340708|ref|ZP_08080960.1| RNA methyltransferase Sun [Lactobacillus ruminis ATCC 25644]
gi|417974294|ref|ZP_12615115.1| 16S rRNA m(5)C 967 methyltransferase [Lactobacillus ruminis ATCC
25644]
gi|323091831|gb|EFZ34451.1| RNA methyltransferase Sun [Lactobacillus ruminis ATCC 25644]
gi|346329291|gb|EGX97589.1| 16S rRNA m(5)C 967 methyltransferase [Lactobacillus ruminis ATCC
25644]
Length = 447
Score = 207 bits (526), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 151/431 (35%), Positives = 229/431 (53%), Gaps = 45/431 (10%)
Query: 65 AVRLM-RIQFGGAFADL-LNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGT 122
AV+L+ RI+ G++++L LN+ K S LD+RD+ L+T+IV G
Sbjct: 12 AVKLLERIEKNGSYSNLALNQTIKKS-----------------QLDERDVSLLTNIVYGV 54
Query: 123 IRWR----RYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVR 177
I+ + YLD I K +EP + ++L+ Y+ + LD +P AV +E +
Sbjct: 55 IQRKLTLEFYLDGFI-------KNRRKVEPWVYELLKTALYQQLYLDKIPKRAVFNETIE 107
Query: 178 LAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRW 237
+AKV G V GIL ++ + LP P GN + A ++ S P W+V +
Sbjct: 108 IAKVNGHEGIRRFVTGILHEI----ERKGLPDP---GNVKDSAEKISIESSTPKWLVEKL 160
Query: 238 TKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFI 297
T+ LG E+ I L+ N P+ S+R N K T V L +V L L +
Sbjct: 161 TEELGFEKTISLLKSINEPPAQSIRVNLAKN-TVHQAVSALEKEGFKVSKSLVSPLG--L 217
Query: 298 RVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCL 357
RV G + Q+ K GL VQDESA L V +D + ++D CAAPGGKT+ +A+ L
Sbjct: 218 RVSGGF--IPQSDAYKRGLVTVQDESAMLAVDSMDVKSTDVVLDGCAAPGGKTMQIAAVL 275
Query: 358 SGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKC-DKVLLDAPC 416
G VYA+DI+ ++ ++ + A+L V + D R + + DKVL+DAPC
Sbjct: 276 DS-GRVYALDIHAHKVGLIEKNAELCGVTKYVTAKKTDARKAKEEFDEESFDKVLIDAPC 334
Query: 417 SGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEER 476
SGLG++ ++ ++++++ +D L +Q +LD + LVKPGG L YSTC+I EEN+
Sbjct: 335 SGLGLMRRKPEVKYDKHFKDSLSLHDVQVGILDQVAELVKPGGRLTYSTCTILNEENQAT 394
Query: 477 VEAFLLRHPEF 487
V+AFL RHPEF
Sbjct: 395 VDAFLKRHPEF 405
>gi|164687800|ref|ZP_02211828.1| hypothetical protein CLOBAR_01444 [Clostridium bartlettii DSM
16795]
gi|164603075|gb|EDQ96540.1| ribosomal RNA small subunit methyltransferase B [Clostridium
bartlettii DSM 16795]
Length = 441
Score = 207 bits (526), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 144/429 (33%), Positives = 234/429 (54%), Gaps = 20/429 (4%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQIL-RIGFYE 160
F+ +LD+RD T+I+ G + + YLD++I L K S+ L ++IL R+G Y+
Sbjct: 29 FKDCNLDNRDRGFATEIIYGVVENKIYLDYIIDKLS---KIKSNKLNLKVKILLRMGIYQ 85
Query: 161 IVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQ 219
I+ LD + YA V+E V L K AG VN +LR ++ K++ + +++ D
Sbjct: 86 ILFLDSVSDYAAVNETVNLTKKLDNRSAG-FVNAVLRNVIRQKED----IGEVKIKDTVD 140
Query: 220 ARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLN 279
LAT YS+ W+VR W G+E L+ N PS LR N+ K TR +L+ L
Sbjct: 141 N--LATKYSYNKWIVRNWISNFGREFTEDLLEANTERPSIYLRVNTLK-TTRDELIKLLE 197
Query: 280 LLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSI 339
+ +V E +DE I+V L+N+ L K+GL VQD S+ LV +++PQ +
Sbjct: 198 --EQEVNCEKVPFMDEAIKV-NNLKNIENNELYKKGLFTVQDISSMLVGKILNPQKDTKV 254
Query: 340 VDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRIL-NETAKLHQVNSVIRTIHADLRT 398
+D C+APGGKT ++A+ + G V + DI + +++++ N +L N ++ D
Sbjct: 255 LDVCSAPGGKTTHIATLMENSGQVISRDIFEHKIKLIQNSVNRLGLKNVDVQLF--DALN 312
Query: 399 FADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPG 458
+S K D VL D PCSGLG++ ++ ++++ + E++++L LQ ++L A+ VK G
Sbjct: 313 LDKDSIDKFDSVLADVPCSGLGIIKRKPEIKYKEK-EEIKDLPKLQKQILQNAAKYVKVG 371
Query: 459 GVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDG 518
G L+YSTC+I +EN E VE+FL + F ++ + + G+ P H +DG
Sbjct: 372 GTLIYSTCTIQDDENIEVVESFLQSNKRFKLEKIENINIDLENEDKGYLKIYPNVHGMDG 431
Query: 519 AFAARLVRA 527
F A+L R
Sbjct: 432 FFIAKLKRV 440
>gi|336236100|ref|YP_004588716.1| sun protein [Geobacillus thermoglucosidasius C56-YS93]
gi|335362955|gb|AEH48635.1| sun protein [Geobacillus thermoglucosidasius C56-YS93]
Length = 447
Score = 207 bits (526), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 137/391 (35%), Positives = 220/391 (56%), Gaps = 22/391 (5%)
Query: 104 TKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVK 163
T L +RD+RL+T+IV GTI+ R LD+ + K +E + +LR+ Y+++
Sbjct: 34 THRLSERDVRLLTEIVYGTIQRRDTLDYYLAPFL---KKARKLERWVRVLLRLTLYQVLY 90
Query: 164 LD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARA 222
LD +P A + E V +AK G +LVNG++R ++ PL +E D + A
Sbjct: 91 LDRIPDRAAIFEAVEIAKKRGHQGIASLVNGVMRAIL---RQGVPPLENIE--DEVERLA 145
Query: 223 LATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLK 282
+AT SHP W+V+RW + G E ++ N P + R N+ + +T A+ + +L
Sbjct: 146 VAT--SHPRWLVKRWVEQYGWIETKRMCETNLLPPKQTARVNTAR-ITIAETLDRLRQEG 202
Query: 283 LQVPH-ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVD 341
++V E++ E I+ K G N+ + G +QDES+ LV + P+ + ++D
Sbjct: 203 MEVSRGEVAA---EAIQAKKG--NLANTEAFRRGWITIQDESSMLVARALGPKEHERVLD 257
Query: 342 CCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSV-IRTIHADLRTFA 400
CAAPGGK+ ++A ++ G V DI++ ++ ++ E AK Q+ ++ RT+ D R
Sbjct: 258 SCAAPGGKSTHIAELMNNTGQVICADIHEHKVNLIEENAKRLQLTNISARTL--DSRRLG 315
Query: 401 DNSTVKC-DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGG 459
+ + DK+L+DAPCSG GV+ ++ D+++ + D+ L LQ E+LDA + L+K GG
Sbjct: 316 EVFERETFDKILVDAPCSGFGVIRRKPDIKYAKTEADISSLAALQREILDAVAPLLKKGG 375
Query: 460 VLVYSTCSIDPEENEERVEAFLLRHPEFSID 490
LVYSTC+ID EENE + FL HPEFS D
Sbjct: 376 TLVYSTCTIDHEENEAVIAQFLNDHPEFSPD 406
>gi|407796647|ref|ZP_11143600.1| Sun protein [Salimicrobium sp. MJ3]
gi|407019163|gb|EKE31882.1| Sun protein [Salimicrobium sp. MJ3]
Length = 450
Score = 206 bits (525), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 128/395 (32%), Positives = 215/395 (54%), Gaps = 22/395 (5%)
Query: 110 RDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPP 168
+D L+T++V GT++ R LD+ + +K + P + +L + Y++ LD +P
Sbjct: 42 QDSGLLTELVYGTLQHRDLLDYWLEPFMKKQKKIT---PWVKWLLYMSVYQMEMLDRIPD 98
Query: 169 YAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQ--ARALATI 226
+AV++E V ++K G + N +LR S+ + D + A LA
Sbjct: 99 HAVLNEAVSISKRKGHKGTASFTNAVLR---------SVQREGVRSADEIEDSAERLAVR 149
Query: 227 YSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVP 286
SHP W+V RW G E + + N S+R ++R + V +L +V
Sbjct: 150 TSHPHWLVNRWIDQYGYETTESMCMTNQLRMPESIRVQPLL-LSRGEAVTELERDGFEV- 207
Query: 287 HELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAP 346
E S + I + G N+I+ L +EGL +QD+S+ LV +++P+PGQ+++D CAAP
Sbjct: 208 -EESRFSSQGIILHEG--NIIKHRLFREGLVTIQDQSSMLVAELMNPEPGQTVLDACAAP 264
Query: 347 GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-NSTV 405
GGKT +++ + +G VYA D++K + ++ E A + ++ + I + D R D +
Sbjct: 265 GGKTTHISEKMKNEGTVYAYDLHKKKAALIREKANILRLTN-IHAENYDARKLQDKHENE 323
Query: 406 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465
D VL+DAPCSG GV+ + D++++++ ED+ L+ +QD +LD + L+K G+LVYST
Sbjct: 324 TFDHVLVDAPCSGFGVIRSKPDIKYSKKEEDIYRLREVQDHILDHVAPLLKENGLLVYST 383
Query: 466 CSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDF 500
C++D EN+E V FL RHP F ++ VP D
Sbjct: 384 CTVDRHENDEAVRDFLKRHPAFEMEDFVDRVPEDL 418
>gi|226226029|ref|YP_002760135.1| putative rRNA methyltransferase [Gemmatimonas aurantiaca T-27]
gi|226089220|dbj|BAH37665.1| putative rRNA methyltransferase [Gemmatimonas aurantiaca T-27]
Length = 428
Score = 206 bits (525), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 145/430 (33%), Positives = 215/430 (50%), Gaps = 26/430 (6%)
Query: 103 RTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIV 162
RT LD RD R V ++V G +R R LD + L S ++ +L ILR+G Y+++
Sbjct: 14 RTPTLDARDRRWVQELVWGVLRHRERLDAI--LATRIRGGLSVLDDGVLDILRLGTYQLL 71
Query: 163 KLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQAR 221
+D +PPYA + ++V K GAG LVN +LR++ + LP +
Sbjct: 72 SMDSVPPYAAIGQSVEAVKRKHGIGAGKLVNAVLRRIDRERATIEPALPADPVD------ 125
Query: 222 ALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLL 281
ALA +SHP W+V RW G E +L+ NN+ +R + + A+ + Q ++
Sbjct: 126 ALALQHSHPSWVVGRWVSQFGIAETAQLLALNNTPAPVVVRPHGVQADALAESLTQSDVS 185
Query: 282 KLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVD 341
+VP + E + + TG + + + G VQD +A LV G + D
Sbjct: 186 TRRVPL-----VPESLEI-TGPVALTEVDAFRRGQFYVQDPAATLVAQYAHVPEGSVVAD 239
Query: 342 CCAAPGGKTLYMASCLSGQGLVYAIDINKGRL-RILNETAKL----HQVNSVIRTIHADL 396
CAAPG K L MA LV A D ++ R+ R+ + +L N + T+ AD
Sbjct: 240 LCAAPGSKALEMARRAR---LVIAADRSESRVDRMRSGFDRLGIDTTSSNRAMVTLVADA 296
Query: 397 RTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVK 456
S D VL+D PC+G G + D RW + D L LQ ++L AA+ +V+
Sbjct: 297 ---TQPSIDPVDAVLVDVPCTGTGTFRRHPDARWRLQASDFAVLGALQRQILTAAAAVVR 353
Query: 457 PGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSL 516
P G+L+YSTCS++ EEN+E V+AFL HP+F ++P V SD V G P +H
Sbjct: 354 PNGLLIYSTCSLEAEENDEVVDAFLASHPDFVVEPPPAGVVSDAVIDRGRLRVLPQQHGF 413
Query: 517 DGAFAARLVR 526
DGAFA R+ R
Sbjct: 414 DGAFAVRMRR 423
>gi|406670660|ref|ZP_11077905.1| ribosomal RNA small subunit methyltransferase B [Facklamia hominis
CCUG 36813]
gi|405582176|gb|EKB56182.1| ribosomal RNA small subunit methyltransferase B [Facklamia hominis
CCUG 36813]
Length = 454
Score = 206 bits (525), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 142/425 (33%), Positives = 237/425 (55%), Gaps = 24/425 (5%)
Query: 108 DDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-M 166
D RD+ L+ +V G+++ R+ LD LI +K +E + +LR+ +++V LD +
Sbjct: 47 DQRDIDLLVRVVYGSVQRRKTLDFLIEPYIQGKK----VESWVRSLLRMSVFQMVYLDRI 102
Query: 167 PPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATI 226
P YA+VDE V +AK G G VNG+LR+ + PL +E + + LA
Sbjct: 103 PNYAIVDEAVTIAKTNGHQGLGKFVNGVLRQFM------RHPLRSIELI-KDPIKRLAIT 155
Query: 227 YSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVP 286
YS W+V ++K+L +E + + N +P S R N K +T+ + NL + P
Sbjct: 156 YSIDDWLVEYFSKHLSEESLERFLASLNEEPLISARINPLK-ITQKQAIDWFNLRGM--P 212
Query: 287 HELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAP 346
E S +R + + I + L KEG +QDES+ LV + + + ++D CAAP
Sbjct: 213 VEGSPISSFGLRFEK--KTPIHSELFKEGALTIQDESSMLVAPLGQLKGHEKVLDVCAAP 270
Query: 347 GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIR-TIHA-DLRTFADNST 404
GGK ++AS L G ++A+DI++ +L+IL + L ++N R T+HA D ++ +
Sbjct: 271 GGKATHIASLLDN-GHLWALDISQRKLKILAD--HLDRMNLSDRVTVHATDALKYSPDFQ 327
Query: 405 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464
D + LDAPCSG G++ ++ ++++ + ++ L +QD+LL+ A+ L+KPGG L+YS
Sbjct: 328 DLFDVIYLDAPCSGTGLMRRKPEIKYRKDQTSIDSLCQIQDQLLEKAASLLKPGGRLIYS 387
Query: 465 TCSIDPEENEERVEAFLLRHPEFSIDPA--DGLVPSDFVTKHGFFFSDPIKHSLDGAFAA 522
TCS+ EENE +V++FL +H F IDP + VP +T+ G+ P + DG F +
Sbjct: 388 TCSLVYEENEYQVQSFLKKHSNFMIDPVKEEEGVPKKLLTEEGYVRVWPQVYHTDGFFIS 447
Query: 523 RLVRA 527
R +++
Sbjct: 448 RFIKS 452
>gi|357048821|ref|ZP_09110055.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
saccharolyticus 30_1]
gi|355384774|gb|EHG31832.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
saccharolyticus 30_1]
Length = 452
Score = 206 bits (524), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 150/471 (31%), Positives = 252/471 (53%), Gaps = 58/471 (12%)
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVG 120
R V+ L+RI+ GGA+++LL ++ G L+D+D RL+T++V
Sbjct: 13 RFVALEALVRIERGGAYSNLLLRELMNQGR----------------LNDKDGRLLTEMVY 56
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLA 179
GTI + LD+ + + K ++P + +LR+ Y+++ LD +P +A+++E V +A
Sbjct: 57 GTISRQLLLDYYLANFIKNAK---KVDPWVRSLLRLSLYQMLYLDKVPNHAILNEAVEIA 113
Query: 180 KVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTK 239
K PG G VNG+LR + +P L+ R LA S P+W+ R+
Sbjct: 114 KAKGNPGIGKFVNGVLRTI------QREGVPALDQIKDPLER-LAIEISMPLWLTERFVA 166
Query: 240 YLG----QEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDE 295
+G +E + L+V +++ L+ +TR + ++QL ++ E L
Sbjct: 167 QIGSDKTRELGLSLLVPSHASGRLDLQR-----ITRNEAILQLQEEGIEA-RESQLSPYG 220
Query: 296 FIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMAS 355
+ K L + L +GL +QDES+ LV + P ++D CAAPGGKT ++AS
Sbjct: 221 IVADKGFLAG---SSLYHDGLLTIQDESSMLVAPALHIAPEHQVLDACAAPGGKTTHIAS 277
Query: 356 CLSGQ--GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVKCDKVLL 412
LS + G V A+DI+ +++++ E A+ V+ V++ D R A + + D++L+
Sbjct: 278 FLSAEAGGKVTALDIHPHKVKLITENAERLAVSEVVQAEVMDAREVAQHFEEQQFDRILV 337
Query: 413 DAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEE 472
DAPCSGLG++ ++ D+++N++ D+E L +Q +L++A+ +K G+++YSTC+I EE
Sbjct: 338 DAPCSGLGLMRRKPDIKYNKQAADLERLPEIQLAILESAAPTLKNSGIMIYSTCTIMLEE 397
Query: 473 NEERVEAFLLRHPEFS-ID---PAD----------GLVPSDFVTKHGFFFS 509
N+ VEAFL HPEF ID AD + P DF+T GFF S
Sbjct: 398 NQAVVEAFLADHPEFERIDVSVNADIAANINDQMLTIYPQDFMTD-GFFIS 447
>gi|89098704|ref|ZP_01171586.1| sun protein [Bacillus sp. NRRL B-14911]
gi|89086666|gb|EAR65785.1| sun protein [Bacillus sp. NRRL B-14911]
Length = 448
Score = 206 bits (524), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 134/391 (34%), Positives = 222/391 (56%), Gaps = 18/391 (4%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
+ D+ +D+ L+T++V GT++ + LD+ + + K +E + Q+LRI FY++
Sbjct: 32 IKKNDISSKDVGLLTELVYGTLQRKMTLDYQMEPFLKNPK---KLESWVRQLLRITFYQM 88
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
+ LD +P A + E V +AK G +VNG+LR L + + L ++ D +
Sbjct: 89 IYLDKIPDRAAIYEAVEIAKRKGHKGISGMVNGVLRSL---QRQGARSLDSIK--DSVER 143
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
A+ T SHP+W+V+RW LG E A ++ N + P + R N K V+ + + L
Sbjct: 144 LAMET--SHPLWLVKRWVDQLGFERAKEMCELNLTAPMQTGRVNLMK-VSMDECMAMLEE 200
Query: 281 LKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIV 340
V E S + E ++ K G N+ + KEG ++QDES+ L + + ++
Sbjct: 201 EGYLV--EASPVIPEAVKSKKG--NLAHSRAFKEGYLSIQDESSMLAAYALGAEKDNHVL 256
Query: 341 DCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 400
D CAAPGGKT ++A L G V ++D+++ +++++ + A+ + S I T D RT
Sbjct: 257 DACAAPGGKTTHIAEKLGNTGQVISLDLHEHKVKLIADNARRLGL-SNIETKAMDSRTVQ 315
Query: 401 DNSTVKC-DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGG 459
++ D++LLDAPCSGLGV+ ++ D+++ ++ ED+ L+ +Q +LL+A + L+K GG
Sbjct: 316 EHFNAGSFDRILLDAPCSGLGVMRRKPDMKYTKKEEDIMHLQKVQLKLLEAVAPLLKDGG 375
Query: 460 VLVYSTCSIDPEENEERVEAFLLRHPEFSID 490
LVYSTC++D EENE V FL HPEFS D
Sbjct: 376 TLVYSTCTVDREENENAVRQFLDSHPEFSGD 406
>gi|379726842|ref|YP_005319027.1| ribosomal RNA small subunit methyltransferase B [Melissococcus
plutonius DAT561]
gi|376317745|dbj|BAL61532.1| ribosomal RNA small subunit methyltransferase B [Melissococcus
plutonius DAT561]
Length = 453
Score = 206 bits (523), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 139/422 (32%), Positives = 231/422 (54%), Gaps = 35/422 (8%)
Query: 70 RIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYL 129
RI GGA+++LL NEM ++ L ++D RL T+IV GTI + L
Sbjct: 22 RIDKGGAYSNLLL--------NEM--------IQSSQLGEKDSRLFTEIVYGTISRKLLL 65
Query: 130 DHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAG 188
++ + H K +E + +L + FY+++ LD +P +AV++E V +AK G G
Sbjct: 66 EYYLDTFIHKRK---KVEHWVRMLLILSFYQLLYLDKVPDHAVINEAVEIAKRRGNLGTG 122
Query: 189 NLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIK 248
VNGILR L LP L+ R L+ S P+W+V++ + LG+ E K
Sbjct: 123 KFVNGILRSL------QRRGLPSLDEISDPIER-LSIEISMPLWLVKKLIQQLGETETKK 175
Query: 249 LMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQ 308
L + S R +SRK ++R D ++QL ++ E + I K L
Sbjct: 176 LGLSLFEKSHVSGRIDSRK-ISRFDAIIQLQKEGIEAS-ESPISPYGIIAEKGRLAT--- 230
Query: 309 AGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLS--GQGLVYAI 366
+ L +EG +QDES+ L + ++D CAAPGGKT ++A+ L+ QG + A+
Sbjct: 231 SSLFREGKLTIQDESSMLAAPTLQIDESNQVLDACAAPGGKTTHIATFLNQQKQGKIIAL 290
Query: 367 DINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-NSTVKCDKVLLDAPCSGLGVLSKR 425
DI+ +L+++ E A+ QV+S+I+ D R + + D++L+DAPCSGLG++ ++
Sbjct: 291 DIHDHKLKLIKENAERMQVSSIIKLEKLDARKVKEVYPSEYFDRILVDAPCSGLGLMRRK 350
Query: 426 ADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHP 485
D+++ + L+D+++L +Q+E++++ +K GG+L YSTC+I EEN+ + FL +HP
Sbjct: 351 PDIKYRKTLQDIKKLAKIQEEIIESVVPTLKKGGILTYSTCTITQEENQHVIITFLKKHP 410
Query: 486 EF 487
EF
Sbjct: 411 EF 412
>gi|253702184|ref|YP_003023373.1| sun protein [Geobacter sp. M21]
gi|251777034|gb|ACT19615.1| sun protein [Geobacter sp. M21]
Length = 448
Score = 206 bits (523), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 159/488 (32%), Positives = 252/488 (51%), Gaps = 64/488 (13%)
Query: 58 SPHRAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDL-DDRDLRLVT 116
+P RA + L+RI+ +FAD+L D+E+ +KD+ D L+T
Sbjct: 5 NPRRAAFDI-LLRIEKEKSFADILI-------DHEL----------SKDIIKGADRGLLT 46
Query: 117 DIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQI-----LRIGFYEIVKLD-MPPYA 170
++V G +R + LD++I FS P L++ LR+G Y+ LD +P A
Sbjct: 47 ELVYGVLRRQGTLDYII-------SQFSKQRPEKLELFVRLLLRLGIYQCFFLDRVPVSA 99
Query: 171 VVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQ--ARALATIYS 228
V+E V LAK L P A +N +LR +D + P DRA A LA YS
Sbjct: 100 AVNETVNLAK-ELAPRASGFINAVLRNADRGRDTITYP-------DRAARPAEYLAARYS 151
Query: 229 HPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHE 288
HP W+ ++W LG E A +L + P ++R N+ + +TR +L+ +L + V
Sbjct: 152 HPAWLAQQWCDQLGLEAAEELAAAMSEPPPLTVRVNTLR-ITREELIRRL--VGEGVSCS 208
Query: 289 LSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGG 348
+ + IR+ Q + + ++GL VQDES+ L + P G+ ++D CAAPGG
Sbjct: 209 ATSWSPDGIRLNQSGQ-ITRLPSFRDGLFTVQDESSQLAPLFLAPGKGERVLDACAAPGG 267
Query: 349 KTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCD 408
KT +A + G +YA D+N +LR++ ET +NSV RTF ++T +
Sbjct: 268 KTTQIAQLMQDSGEIYACDVNNKKLRLIKETCDRLGINSV--------RTFTMDATAPSN 319
Query: 409 --------KVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGV 460
++L+DAPCSGLGV+ + + +W++ +D+ +L Q +L+ ++P G
Sbjct: 320 AIKETTFHRILVDAPCSGLGVIRRNPEGKWSKSGDDLLQLARTQVSILENLCRYLEPKGT 379
Query: 461 LVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVP--SDFVTKHGFFFSDPIKHSLDG 518
++Y+TCS +ENE V++FL HPEF ++ L P + T+ GFF S P + +DG
Sbjct: 380 ILYATCSTSIQENEYVVDSFLGSHPEFVVEDLRPLFPQYAPLFTERGFFRSWPHRDGMDG 439
Query: 519 AFAARLVR 526
F+ARL R
Sbjct: 440 FFSARLKR 447
>gi|172057934|ref|YP_001814394.1| sun protein [Exiguobacterium sibiricum 255-15]
gi|171990455|gb|ACB61377.1| sun protein [Exiguobacterium sibiricum 255-15]
Length = 446
Score = 206 bits (523), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 138/427 (32%), Positives = 231/427 (54%), Gaps = 43/427 (10%)
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVG 120
R + L++I GGAF+ + V + L R + D+ L T++V
Sbjct: 4 RDAAVTTLLKIGQGGAFSTI--------------SVHQMLEKRA--ISKADVGLYTELVY 47
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLA 179
GT+ LD+++ +K ++P + +LR+ Y++ LD +P +AV++E V +A
Sbjct: 48 GTLSRELTLDYILEPFLTKQK---KLDPFMRPLLRMSVYQLFYLDRIPDHAVINEAVEIA 104
Query: 180 KVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTK 239
K +P +VNG+LR ++ + +P DR ++ SHPVW+V+RW +
Sbjct: 105 KTRGKPHIAKVVNGVLRNVLRTGKPDFSAIPST--VDR-----ISIETSHPVWLVKRWLE 157
Query: 240 YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQ-VPHELSLHLDEFIR 298
G+EE K+ NN ++R N TR D + LL+ Q V + + + +
Sbjct: 158 LFGEEETWKMCRLNNEPAPVTVRVNR----TRTDQQEAIVLLEEQGVIAKPAHAAPDGLE 213
Query: 299 VKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLS 358
+ +G +V Q LL+ G ++QDES+ LV A + QP ++D CAAPGGK +++A L+
Sbjct: 214 IVSG--SVQQTDLLERGYLSLQDESSMLVAAALGAQPTDHVLDSCAAPGGKAMHIAEGLA 271
Query: 359 GQGLVYAIDINKGRLRILNETAK---LHQVNS-VIRTIHADLRTFADNSTVKCDKVLLDA 414
LV A+D++ ++++L + A LH V + + A R T D++L+DA
Sbjct: 272 TGSLV-ALDLHPHKVKLLEKQATRLGLHNVQAEALDARQAGTRF----ETASFDRILVDA 326
Query: 415 PCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENE 474
PCSGLGV+ ++ D++W +R ED+ +L ++Q ++L+A LVKP G VYSTC++DP ENE
Sbjct: 327 PCSGLGVIRRKPDIKWTKRPEDLTQLPVIQRQILEAVLPLVKPDGTFVYSTCTMDPLENE 386
Query: 475 ERVEAFL 481
++ E L
Sbjct: 387 QQTEFIL 393
>gi|257871148|ref|ZP_05650801.1| sun protein [Enterococcus gallinarum EG2]
gi|257805312|gb|EEV34134.1| sun protein [Enterococcus gallinarum EG2]
Length = 458
Score = 206 bits (523), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 150/471 (31%), Positives = 252/471 (53%), Gaps = 58/471 (12%)
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVG 120
R V+ L+RI+ GGA+++LL ++ G L+D+D RL+T++V
Sbjct: 19 RFVALEALVRIERGGAYSNLLLRELMNQGR----------------LNDKDGRLLTEMVY 62
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLA 179
GTI + LD+ + + K ++P + +LR+ Y+++ LD +P +A+++E V +A
Sbjct: 63 GTISRQLLLDYYLANFIKNAK---KVDPWVRSLLRLSLYQMLYLDKVPNHAILNEAVEIA 119
Query: 180 KVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTK 239
K PG G VNG+LR + +P L+ R LA S P+W+ R+
Sbjct: 120 KAKGNPGIGKFVNGVLRTI------QREGVPALDQIKDPLER-LAIEISMPLWLTERFVA 172
Query: 240 YLG----QEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDE 295
+G +E + L+V +++ L+ +TR + ++QL ++ E L
Sbjct: 173 QIGSDKTRELGLSLLVPSHASGRLDLQR-----ITRNEAILQLQEEGIEA-RESQLSPYG 226
Query: 296 FIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMAS 355
+ K L + L +GL +QDES+ LV + P ++D CAAPGGKT ++AS
Sbjct: 227 IVADKGFLAG---SSLYHDGLLTIQDESSMLVAPALHIAPEHQVLDACAAPGGKTTHIAS 283
Query: 356 CLSGQ--GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVKCDKVLL 412
LS + G V A+DI+ +++++ E A+ V+ V++ D R A + + D++L+
Sbjct: 284 FLSAEAGGKVTALDIHPHKVKLITENAERLAVSEVVQAEVMDAREVAQHFEEQQFDRILV 343
Query: 413 DAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEE 472
DAPCSGLG++ ++ D+++N++ D+E L +Q +L++A+ +K G+++YSTC+I EE
Sbjct: 344 DAPCSGLGLMRRKPDIKYNKQAADLERLPEIQLAILESAAPTLKNSGIMIYSTCTIMLEE 403
Query: 473 NEERVEAFLLRHPEFS-ID---PAD----------GLVPSDFVTKHGFFFS 509
N+ VEAFL HPEF ID AD + P DF+T GFF S
Sbjct: 404 NQAVVEAFLADHPEFERIDVSVNADIAANINDQMLTIYPQDFMTD-GFFIS 453
>gi|420264395|ref|ZP_14767026.1| sun protein [Enterococcus sp. C1]
gi|394768368|gb|EJF48296.1| sun protein [Enterococcus sp. C1]
Length = 452
Score = 205 bits (522), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 151/476 (31%), Positives = 252/476 (52%), Gaps = 68/476 (14%)
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVG 120
R V+ L+RI+ GGA+++LL ++ G L+D+D RL+T++V
Sbjct: 13 RFVALEALLRIEKGGAYSNLLLRELMNQGR----------------LNDKDGRLLTELVY 56
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLA 179
GTI + LD+ + K ++P + +LR+ Y+++ LD +P +A++ E V +A
Sbjct: 57 GTISRQLLLDYYLDRFI---KNARKVDPWVKTLLRLSLYQMLYLDKVPAHAIIHEAVDIA 113
Query: 180 KVALRPGAGNLVNGILRK--------LVLLKDNNSLPLPKLEGNDRAQARALATIYSHPV 231
K PG G VNG+LR L L+KD P+ +L AT S P+
Sbjct: 114 KAKGNPGTGKFVNGVLRTIQRQGVPDLALIKD----PMERL-----------ATEISLPL 158
Query: 232 WMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV-PHELS 290
W+ ++ K +G EE +L + +P+ + + +++A + +L + P ELS
Sbjct: 159 WLTKKLVKQIGIEETSELG-YALFEPNHASGRIDLQRISQAAAIERLQEEGIDARPSELS 217
Query: 291 LHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKT 350
+ + G + + L KEGL +QDES+ LV V+ ++D CAAPGGKT
Sbjct: 218 PY---GVVADKGF--MAGSSLYKEGLLTIQDESSMLVAPVLQVARNHQVLDACAAPGGKT 272
Query: 351 LYMASCLSGQ--GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVKC 407
++A+ LS G V A+DI+ +++++ + A+ V +V+ T D R A + +
Sbjct: 273 THIAAFLSAAEGGKVTALDIHAHKVKLIQQNAQRLGVEAVVETRVMDARETAQTFAPEQF 332
Query: 408 DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467
D++L+DAPCSGLG++ ++ D+++++ D + L +Q E+L++A+ +K G++VYSTC+
Sbjct: 333 DRILVDAPCSGLGLMRRKPDIKYSKTEADFQRLPQIQREILESAAPTLKKSGIMVYSTCT 392
Query: 468 IDPEENEERVEAFLLRHPEFSIDP-ADG-------------LVPSDFVTKHGFFFS 509
I EEN++ V AFL HPEF P A G + P DF+T GFF S
Sbjct: 393 ILEEENQQVVAAFLADHPEFEQMPLAVGPLAAEAVQEDMLTIYPQDFMTD-GFFIS 447
>gi|422416342|ref|ZP_16493299.1| ribosomal RNA small subunit methyltransferase B [Listeria innocua
FSL J1-023]
gi|313623277|gb|EFR93521.1| ribosomal RNA small subunit methyltransferase B [Listeria innocua
FSL J1-023]
Length = 446
Score = 205 bits (522), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 143/430 (33%), Positives = 238/430 (55%), Gaps = 28/430 (6%)
Query: 101 GFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEP--LLLQILRIGF 158
+ + L+ D L+T++V GT + + LD+ + F + EP + +LR+
Sbjct: 32 ALKKQKLNPLDKGLLTELVYGTTQRKITLDYYLA-------PFLNKEPDNWVKNLLRMSV 84
Query: 159 YEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDR 217
Y++ LD +P +A+++E +AK G VNG+LR V+ K S+ L K D
Sbjct: 85 YQLTFLDKVPEHAILNEAGDIAKDLGHQGVTKFVNGVLRN-VIRKGVPSIDLIK----DP 139
Query: 218 AQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQ 277
Q A+ T S P W+ RRW G E+ ++ + P S+R N + + L+ +
Sbjct: 140 VQKIAVET--SLPEWLARRWADQYGLEKLREIGLAFLVAPHQSIRVNQTE-IRAEQLIKE 196
Query: 278 LNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQ 337
LN + V + +DE + V+ G +V + K+G C++QDES+ LV + +
Sbjct: 197 LNDQGITVTR--NEFIDEALLVEKG--SVAETKAYKDGKCSIQDESSMLVAYALQLEDNL 252
Query: 338 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR 397
+++D CAAPGGKT ++A + G G+V+A+DI++ + +++++ AK Q+ + IRT H D R
Sbjct: 253 TVLDACAAPGGKTTHIAEKMHGTGMVHALDIHEKKTKLIDQAAKRLQLLN-IRTAHLDAR 311
Query: 398 TFADNSTVKC-DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVK 456
T + + D++L+DAPCSG GVL ++ D+++ + +D+ +L +Q +LD S LVK
Sbjct: 312 TASTMFEPETFDRILVDAPCSGFGVLRRKPDIKYAKTEKDIHKLAEIQLAILDDVSQLVK 371
Query: 457 PGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDF--VTKHGFFFSDPIKH 514
G+LVYSTC+ID EENE + AFL +HPEF+++P ++P + K F P
Sbjct: 372 ENGILVYSTCTIDKEENETVLRAFLEKHPEFALEPV--VLPEKLAQIKKDDFVQLLPTDI 429
Query: 515 SLDGAFAARL 524
DG F + L
Sbjct: 430 GSDGFFVSSL 439
>gi|158522242|ref|YP_001530112.1| sun protein [Desulfococcus oleovorans Hxd3]
gi|158511068|gb|ABW68035.1| sun protein [Desulfococcus oleovorans Hxd3]
Length = 468
Score = 205 bits (522), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 139/424 (32%), Positives = 213/424 (50%), Gaps = 20/424 (4%)
Query: 108 DDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKT-FSSMEPLLLQILRIGFYEIVKLD- 165
+ RD LVT +V G +RWR LD+ I H +T M+P +L ILR+G +++ LD
Sbjct: 54 EKRDRALVTTLVYGVLRWRNTLDYTIV---HFSRTPLQRMDPAVLNILRLGLFQLRFLDR 110
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P +A ++ +V L+K A VNG+LR D+ +AL
Sbjct: 111 IPDFAAINSSVDLSKQAGLGRLSGFVNGLLRSSTRHPGEPDP-----PDMDKDPVQALCV 165
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
S P WM+RRW G EE ++L + N+ P ++R N G+ A + +L +
Sbjct: 166 TKSFPEWMIRRWIARFGIEETVQLCDFLNTVPPITVRVN---GLRAAPEQVAASLAQEAA 222
Query: 286 PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAA 345
H E + + V + G VQDE+A L+ + DP+PGQ ++D CA
Sbjct: 223 GVTPGRHAPEAVSFSSPKVPVHEMTAFGAGWFQVQDEAAQLIGLLTDPRPGQRVLDACAG 282
Query: 346 PGGKTLYMASCLSGQGLVYAIDINKGRL-RILNETAKLHQVNSVIRTIHADLRTFAD-NS 403
GGKT ++A + QG + A D + +L R+ E +L N +R + D+
Sbjct: 283 LGGKTGHLARLMENQGRIVAADRDTAKLERLAGEMTRLGITN--VRPMTLDMLVPEQLKD 340
Query: 404 TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463
D+VL D PCSG GV+ + D +W +D+ L+ Q +L + V+ GG+LVY
Sbjct: 341 AGGFDRVLADCPCSGTGVIRRNPDTKWRLSEQDLARLQNDQIAMLTNLADHVRDGGLLVY 400
Query: 464 STCSIDPEENEERVEAFLLRHPEFSID---PADGLVPSDFVTKHGFFFSDPIKHSLDGAF 520
+ CS++PEEN+ V++FL R P+F+ID AD + F GFF + P +H +DG F
Sbjct: 401 AVCSMEPEENDAVVQSFLKRRPDFAIDTGVAADVPAVAGFTDDPGFFRTFPWRHGMDGFF 460
Query: 521 AARL 524
RL
Sbjct: 461 GVRL 464
>gi|335996801|ref|ZP_08562718.1| 16S rRNA m(5)C methyltransferase [Lactobacillus ruminis SPM0211]
gi|335351871|gb|EGM53362.1| 16S rRNA m(5)C methyltransferase [Lactobacillus ruminis SPM0211]
Length = 447
Score = 205 bits (522), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 150/431 (34%), Positives = 228/431 (52%), Gaps = 45/431 (10%)
Query: 65 AVRLM-RIQFGGAFADL-LNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGT 122
AV+L+ RI+ G++++L LN+ K S LD+RD+ L+T+IV G
Sbjct: 12 AVKLLERIEKNGSYSNLALNQTIKKS-----------------QLDERDVSLLTNIVYGV 54
Query: 123 IRWR----RYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVR 177
I+ + YLD I K +EP + ++L+ Y+ + LD +P AV +E +
Sbjct: 55 IQRKLTLEFYLDGFI-------KNRRKVEPWVYELLKTALYQQLYLDKIPKRAVFNETIE 107
Query: 178 LAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRW 237
+AKV G V GIL ++ + LP P GN + A ++ S P W+V +
Sbjct: 108 IAKVNGHEGIRRFVTGILHEI----ERKGLPDP---GNVKDSAEKISIESSTPKWLVEKL 160
Query: 238 TKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFI 297
T+ LG E+ I L+ N P+ S+R N K T V L +V L L +
Sbjct: 161 TEELGFEKTISLLKSINEPPAQSIRVNLAKN-TVHQAVSALEKEGFKVSKSLVSPLG--L 217
Query: 298 RVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCL 357
RV G + + K GL VQDESA L V +D + ++D CAAPGGKT+ +A+ L
Sbjct: 218 RVSGGF--IPHSDAYKRGLVTVQDESAMLAVDSMDVKSTDVVLDGCAAPGGKTMQIAAVL 275
Query: 358 SGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKC-DKVLLDAPC 416
G VYA+DI+ ++ ++ + A+L V + D R + + DKVL+DAPC
Sbjct: 276 DS-GRVYALDIHAHKVGLIEKNAELCGVTKYVTAKKTDARKAKEEFDEESFDKVLIDAPC 334
Query: 417 SGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEER 476
SGLG++ ++ ++++++ +D L +Q +LD + LVKPGG L YSTC+I EEN+
Sbjct: 335 SGLGLMRRKPEVKYDKHFKDSLSLHDVQVGILDQVAELVKPGGRLTYSTCTILNEENQAT 394
Query: 477 VEAFLLRHPEF 487
V+AFL RHPEF
Sbjct: 395 VDAFLKRHPEF 405
>gi|313888508|ref|ZP_07822175.1| ribosomal RNA small subunit methyltransferase B [Peptoniphilus
harei ACS-146-V-Sch2b]
gi|312845537|gb|EFR32931.1| ribosomal RNA small subunit methyltransferase B [Peptoniphilus
harei ACS-146-V-Sch2b]
Length = 430
Score = 205 bits (522), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 122/401 (30%), Positives = 213/401 (53%), Gaps = 26/401 (6%)
Query: 95 YVERTLG-FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQI 153
++E +L + ++D+RD + +I G +R + YLD++I + + F+ + ++L I
Sbjct: 21 FLEESLEILKASNIDERDFAFIKEITTGVVRNKTYLDYVI--RENSKVRFNRIHKIILSI 78
Query: 154 LRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKL 212
L + Y++ LD +P Y++VDE+V LAK+ G+ + NGILR + K L
Sbjct: 79 LEMAIYQMYFLDKVPDYSIVDESVNLAKIYGNKGSISFTNGILRSISKEK--------HL 130
Query: 213 EGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRA 272
+ + L+T YSHP + + G+E KL+ NN P F++R N+ K + R
Sbjct: 131 QVTLKNSIDNLSTYYSHPRFYTEYFYDKYGEEFTKKLLKANNEKPPFTIRVNTLK-INRD 189
Query: 273 DLVMQLNLLKLQVPHELSLHLDEFIRVKT----GLQNVIQAGLLKEGLCAVQDESAGLVV 328
+L+ L E ++E V +I ++G VQD + LV
Sbjct: 190 ELIKNLT--------ESGFDIEETTYVNALNVLNPNGIIDTEFFEKGHFYVQDLGSILVS 241
Query: 329 AVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSV 388
++P ++D CAAPGGKT +++ + G + + D +KG+++++ E A+ ++
Sbjct: 242 TFLNPSKDSKVLDLCAAPGGKTTHLSELMDNTGEIISCDKSKGKIKLIKENAERLGCTNI 301
Query: 389 IRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELL 448
++ D R + K D VL+DAPCSG G+ K+ D++WN+ + D++EL ++Q E+L
Sbjct: 302 SPMVN-DARVLNEEFINKFDYVLVDAPCSGTGLYRKKPDIKWNKGIYDLKELGVIQLEIL 360
Query: 449 DAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSI 489
+ A V+ G+L+YSTCS+ ENE+ +E FL + F I
Sbjct: 361 NKAKEYVREKGLLLYSTCSLSKIENEDVIENFLKENENFKI 401
>gi|404491794|ref|YP_006715900.1| 16S rRNA (5-methyl-C967)-methyltransferase [Pelobacter carbinolicus
DSM 2380]
gi|77543940|gb|ABA87502.1| 16S rRNA (5-methyl-C967)-methyltransferase [Pelobacter carbinolicus
DSM 2380]
Length = 451
Score = 205 bits (522), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 134/387 (34%), Positives = 207/387 (53%), Gaps = 19/387 (4%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD 165
D+D RD L T++V G +R+R LD + LC K + +EP +L +LR+G Y+I++LD
Sbjct: 36 DMDVRDRALATELVYGVLRYRGRLDFALQQLC--RKPLAKVEPAVLNLLRLGCYQILQLD 93
Query: 166 -MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P +A V E V LA+ A +NGILR LV + LP P + R L
Sbjct: 94 RIPNHAAVFETVELARRLKLQRATGFINGILRGLV--RQAAQLPWPDRQ---RDPLDYLE 148
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQ 284
+ S P W+ RW G EEA L +++R N+ K + R L+ LN
Sbjct: 149 HVLSLPRWLAARWLDEFGAEEACALAQAMLKPAPYAIRTNTLK-IQREALLATLNASDCD 207
Query: 285 -VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCC 343
VP + E I ++ G + EG+ +QD+++ L+ +++PQPG+ I+D C
Sbjct: 208 AVPTRF---VPEGIYIRQGETRHLSGH--TEGIFQLQDQASMLISHLLNPQPGERILDAC 262
Query: 344 AAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHA-DLRTFADN 402
AAPGGKT +MA+ + + A+D++ R+ ++ A + HA DL D
Sbjct: 263 AAPGGKTTHMAALTDNRARIVALDLHPQRVDLITRGANRLGCQGI--EGHAWDLTGVPDF 320
Query: 403 -STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVL 461
D++L+DAPCSGLGVL + ++RW R+ D++E+ +Q +L + L++PGG L
Sbjct: 321 LEPASFDRILVDAPCSGLGVLRRNPEIRWRRKPADLKEMARIQRAILGNVAPLLRPGGRL 380
Query: 462 VYSTCSIDPEENEERVEAFLLRHPEFS 488
VYS C+ PEE + + AF HPEF+
Sbjct: 381 VYSLCTFSPEETQNVIRAFTNEHPEFT 407
>gi|317129258|ref|YP_004095540.1| sun protein [Bacillus cellulosilyticus DSM 2522]
gi|315474206|gb|ADU30809.1| sun protein [Bacillus cellulosilyticus DSM 2522]
Length = 449
Score = 205 bits (521), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 137/439 (31%), Positives = 234/439 (53%), Gaps = 34/439 (7%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
+ +L+ +D+ L+T++V GTI++++ LD L ++ +EP +L +LR+ Y++
Sbjct: 32 IKKSNLNQKDVPLLTELVYGTIQYQKLLD--FYLKPFSKRPLEKLEPWVLVLLRLTLYQM 89
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEG-NDRAQ 219
V LD +P A V E V++AK G +VNGILR + LP+L+ D +
Sbjct: 90 VYLDRIPDRAAVHEAVQIAKKRGHQGISGMVNGILRSI------QRNELPQLDTVKDPVE 143
Query: 220 ARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLN 279
AL T SHP W+++RW G ++ ++ + N + P+ S+R N +
Sbjct: 144 RLALKT--SHPEWLIKRWIDQYGIDKTEEMALANLTHPTHSVRVNELNASVEEVIAA--- 198
Query: 280 LLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSI 339
L + E S ++ E + + G +VI +G VQDE + LV + P+ + +
Sbjct: 199 LKNEGIEAEQSKNIPESVLIYKG--SVINTKPFVDGWITVQDEGSMLVAHALSPKENERV 256
Query: 340 VDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT- 398
+D CAAPGGK+ ++A + G + ++DI+K ++ ++ + AK + S+I T D R
Sbjct: 257 LDACAAPGGKSTHIAEKMKNSGQIVSLDIHKHKVGLIEKNAKRLNL-SIINTEQLDARQV 315
Query: 399 ---FADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLV 455
F ++S D++L+DAPCSGLGV+ ++ DL+W++ D+ L +Q E+L+A L+
Sbjct: 316 SGQFEEHS---FDRILVDAPCSGLGVIQRKPDLKWSKNEGDINRLAQIQTEILEAVWPLL 372
Query: 456 KPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLV---PSDFV----TKHGFFF 508
K GG LVYSTC++D EEN E + F+ + D D L+ P F +G
Sbjct: 373 KKGGTLVYSTCTVDKEENNEVITQFVQKKENAQFD--DQLMDRLPKAFHDCKGKGNGMIQ 430
Query: 509 SDPIKHSLDGAFAARLVRA 527
P + S DG F + ++++
Sbjct: 431 LFPGEQSTDGFFISSVIKS 449
>gi|289435165|ref|YP_003465037.1| sun protein [Listeria seeligeri serovar 1/2b str. SLCC3954]
gi|289171409|emb|CBH27953.1| sun protein [Listeria seeligeri serovar 1/2b str. SLCC3954]
Length = 446
Score = 205 bits (521), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 142/430 (33%), Positives = 237/430 (55%), Gaps = 45/430 (10%)
Query: 101 GFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEP--LLLQILRIGF 158
+ + L+ D L+T++V GT + + LD+ + F + EP + +LR+
Sbjct: 32 ALKKQKLNLLDKGLLTELVYGTTQRKITLDYYLA-------PFLNKEPDNWVKNLLRMSV 84
Query: 159 YEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDR 217
Y++ LD +P +A+++E +AK G VNG+LR V+ K S+ L + D
Sbjct: 85 YQLTFLDKVPEHAILNEAGDIAKDLGHQGVTKFVNGVLRN-VIRKGVPSIDLIQ----DP 139
Query: 218 AQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQ 277
+ A+ T S PVW+ +RW K G E+ ++ + P S+R N + + L+ +
Sbjct: 140 VEKIAVET--SLPVWLAKRWAKQYGNEQLREIGMAFLVAPHQSIRVNQTE-IRTEQLIKE 196
Query: 278 LNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQ 337
LN + V + +DE + V+ G +V + K+G C++QDES+ L + +
Sbjct: 197 LNDQGITVTR--NEFIDEALIVEKG--SVAETKAYKDGKCSIQDESSMLATYALQLEDNL 252
Query: 338 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR 397
+++D CAAPGGKT ++A + G G+V+A+DI++ + ++++ AK Q+ + IRT H D R
Sbjct: 253 TVLDACAAPGGKTTHIAEKMHGTGMVHALDIHEKKTKLIDHAAKRLQLLN-IRTAHLDAR 311
Query: 398 T----FADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASL 453
T FA + D++L+DAPCSG GVL ++ D+++ + +D+ +L +Q +LD S
Sbjct: 312 TANTMFAPET---FDRILVDAPCSGFGVLRRKPDIKYAKTEKDIHKLAEIQLAILDDVSQ 368
Query: 454 LVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPAD--------------GLVPSD 499
LVK G+LVYSTC+ID EENE + AFL +HPEF+++P L+P+D
Sbjct: 369 LVKENGILVYSTCTIDKEENETVLRAFLEKHPEFALEPVALPEKLAHIKKDDFVQLLPTD 428
Query: 500 FVTKHGFFFS 509
+ GFF S
Sbjct: 429 -IGSDGFFVS 437
>gi|319649620|ref|ZP_08003776.1| sun protein [Bacillus sp. 2_A_57_CT2]
gi|317398782|gb|EFV79464.1| sun protein [Bacillus sp. 2_A_57_CT2]
Length = 451
Score = 205 bits (521), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 135/395 (34%), Positives = 223/395 (56%), Gaps = 24/395 (6%)
Query: 101 GFRTKDLDDRDLRLVTDIVGGTIRWRRYLD-HLICLLCHDEKTFSSMEPLLLQILRIGFY 159
+ ++D +D+ L+T++ GT++ R LD +L L ++K +E + Q+LR+ Y
Sbjct: 34 AIKKNEIDQKDIGLLTELTYGTLQRRMTLDFYLQPFLAGNKK----IESWVNQLLRLTLY 89
Query: 160 EIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRA 218
++V LD +P A + E V +AK G +VNG+LR + LP LE + +
Sbjct: 90 QMVFLDKIPDRAAIFEAVEIAKRWGHKGISGMVNGVLRNV------QRKGLPDLEQIEDS 143
Query: 219 QARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQL 278
R L+ SHP W+V+RW LG EE K+ N + P + R N K +R + L
Sbjct: 144 VER-LSIETSHPAWLVKRWADQLGFEETKKMCEINLTAPLQTARVNEVKA-SREEC---L 198
Query: 279 NLLKLQVPHELSLHLDEFIRV--KTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPG 336
+LLK + +FI V K N+ + + K+GL +QDES+ L + P
Sbjct: 199 SLLK---EEGFEVEPSQFIPVAIKCLRGNLANSRVFKDGLITIQDESSMLAAYALGGNPN 255
Query: 337 QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADL 396
+ I+D CAAPGGKT ++A + G V ++D+++ +++++N+ A + S I+T D
Sbjct: 256 EKILDACAAPGGKTTHIAEKMQNTGQVISLDLHEHKVKLINDNADRLGL-SNIKTNALDS 314
Query: 397 RTFADNSTVKC-DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLV 455
R ++ + D++L+DAPCSGLGV+ ++ D+++ ++ +D+ L +Q LLDA S L+
Sbjct: 315 RKVQEHYEKESFDRILVDAPCSGLGVMRRKPDMKYTKKEDDLYHLHKIQRNLLDAVSPLL 374
Query: 456 KPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSID 490
K GG+LVYSTC++D EEN+ V++FL + EF D
Sbjct: 375 KKGGILVYSTCTVDKEENQHVVQSFLKNNAEFEGD 409
>gi|257877736|ref|ZP_05657389.1| sun protein [Enterococcus casseliflavus EC20]
gi|257811902|gb|EEV40722.1| sun protein [Enterococcus casseliflavus EC20]
Length = 452
Score = 205 bits (521), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 151/476 (31%), Positives = 252/476 (52%), Gaps = 68/476 (14%)
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVG 120
R V+ L+RI+ GGA+++LL ++ G L+D+D RL+T++V
Sbjct: 13 RFVALEALLRIEKGGAYSNLLLRELMNQGR----------------LNDKDGRLLTELVY 56
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLA 179
GTI + LD+ + K ++P + +LR+ Y+++ LD +P +A++ E V +A
Sbjct: 57 GTISRQLLLDYYLDRFI---KNARKVDPWVKTLLRLSLYQMLYLDKVPAHAIIHEAVDIA 113
Query: 180 KVALRPGAGNLVNGILRK--------LVLLKDNNSLPLPKLEGNDRAQARALATIYSHPV 231
K PG G VNG+LR L L+KD P+ +L AT S P+
Sbjct: 114 KAKGNPGTGKFVNGVLRTIQRQGVPDLALIKD----PMERL-----------ATEISLPL 158
Query: 232 WMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV-PHELS 290
W+ ++ K +G EE +L + +P+ + + +++A + +L + P ELS
Sbjct: 159 WLTKKLVKQIGIEETSELG-YALFEPNHASGRIDLQRISQAAAIERLQEEGIDARPSELS 217
Query: 291 LHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKT 350
+ + G + + L KEGL +QDES+ LV V+ ++D CAAPGGKT
Sbjct: 218 PY---GVVADKGF--MAGSSLYKEGLLTIQDESSMLVAPVLQVARDHQVLDACAAPGGKT 272
Query: 351 LYMASCLSGQ--GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVKC 407
++A+ LS G V A+DI+ +++++ + A+ V +V+ T D R A + +
Sbjct: 273 THIAAFLSAAEGGKVTALDIHAHKVKLIQQNAQRLGVEAVVETRVMDARETAQTFAPEQF 332
Query: 408 DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467
D++L+DAPCSGLG++ ++ D+++++ D + L +Q E+L++A+ +K G++VYSTC+
Sbjct: 333 DRILVDAPCSGLGLMRRKPDIKYSKTEADFQRLPQIQREILESAAPTLKKSGIMVYSTCT 392
Query: 468 IDPEENEERVEAFLLRHPEFSIDP-ADG-------------LVPSDFVTKHGFFFS 509
I EEN++ V AFL HPEF P A G + P DF+T GFF S
Sbjct: 393 ILAEENQQVVAAFLADHPEFEQMPLAVGPLAAEAVQEDMLTIYPQDFMTD-GFFIS 447
>gi|422422526|ref|ZP_16499479.1| ribosomal RNA small subunit methyltransferase B [Listeria seeligeri
FSL S4-171]
gi|313637331|gb|EFS02816.1| ribosomal RNA small subunit methyltransferase B [Listeria seeligeri
FSL S4-171]
Length = 446
Score = 205 bits (521), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 140/427 (32%), Positives = 236/427 (55%), Gaps = 39/427 (9%)
Query: 101 GFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEP--LLLQILRIGF 158
+ + L+ D L+T++V GT + + LD+ + F + EP + +LR+
Sbjct: 32 ALKKQKLNPLDKGLLTELVYGTTQRKITLDYYLA-------PFLNKEPDNWVKNLLRMSV 84
Query: 159 YEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDR 217
Y++ LD +P +A+++E +AK G VNG+LR V+ K S+ L + D
Sbjct: 85 YQLTFLDKVPEHAILNEAGDIAKDLGHQGVTKFVNGVLRN-VIRKGVPSIDLIQ----DP 139
Query: 218 AQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQ 277
+ A+ T S PVW+ +RW K G E+ ++ + P S+R N + + L+ +
Sbjct: 140 VEKIAVET--SLPVWLAKRWAKQYGNEQLREIGMAFLVAPHQSIRVNQTE-IRTEQLIKE 196
Query: 278 LNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQ 337
LN + V + +DE + V+ G +V + K+G C++QDES+ L + +
Sbjct: 197 LNDQGITVTR--NEFIDEALIVEKG--SVAETKAYKDGKCSIQDESSMLATYALQLEDNL 252
Query: 338 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR 397
+++D CAAPGGKT ++A + G G+V+A+DI++ + ++++ AK Q+ + IRT H D R
Sbjct: 253 TVLDACAAPGGKTTHIAEKMHGTGMVHALDIHEKKTKLIDHAAKRLQLLN-IRTAHLDAR 311
Query: 398 TFADNSTVKC-DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVK 456
T + + D++L+DAPCSG GVL ++ D+++ + +D+ +L +Q +LD S LVK
Sbjct: 312 TASTMFEPETFDRILVDAPCSGFGVLRRKPDIKYAKTEKDIHKLAEIQLAILDDVSQLVK 371
Query: 457 PGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPAD--------------GLVPSDFVT 502
G+LVYSTC+ID EENE + AFL +HPEF+++P L+P+D +
Sbjct: 372 ENGILVYSTCTIDKEENETVLRAFLEKHPEFALEPVALPEKLAHIKKDDFVQLLPTD-IG 430
Query: 503 KHGFFFS 509
GFF S
Sbjct: 431 SDGFFVS 437
>gi|422413366|ref|ZP_16490325.1| ribosomal RNA small subunit methyltransferase B [Listeria innocua
FSL S4-378]
gi|313618293|gb|EFR90347.1| ribosomal RNA small subunit methyltransferase B [Listeria innocua
FSL S4-378]
Length = 446
Score = 204 bits (520), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 142/430 (33%), Positives = 237/430 (55%), Gaps = 28/430 (6%)
Query: 101 GFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEP--LLLQILRIGF 158
+ + L+ D L+T++V GT + + LD+ + F + EP + +LR+
Sbjct: 32 ALKKQKLNPLDKGLLTELVYGTTQRKITLDYYLA-------PFLNKEPDNWVKNLLRMSV 84
Query: 159 YEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDR 217
Y++ LD +P +A+++E +AK G VNG+LR V+ K S+ L K D
Sbjct: 85 YQLTFLDKVPEHAILNEAGDIAKDLGHQGVTKFVNGVLRN-VIRKGVPSIDLIK----DP 139
Query: 218 AQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQ 277
Q A+ T S P W+ RRW G E+ ++ + P S+R N + + L+ +
Sbjct: 140 VQKIAVET--SLPEWLARRWADQYGLEKLREIGLAFLVAPHQSIRVNQTE-IRAEQLIKE 196
Query: 278 LNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQ 337
LN + + +DE + V+ G +V + K+G C++QDES+ LV + +
Sbjct: 197 LNDQGITATR--NEFIDEALLVEKG--SVAETKAYKDGKCSIQDESSMLVAYALQLEDNL 252
Query: 338 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR 397
+++D CAAPGGKT ++A + G G+V+A+DI++ + +++++ AK Q+ + IRT H D R
Sbjct: 253 TVLDACAAPGGKTTHIAEKMHGTGMVHALDIHEKKTKLIDQAAKRLQLLN-IRTAHLDAR 311
Query: 398 TFADN-STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVK 456
T + + D++L+DAPCSG GVL ++ D+++ + +D+ +L +Q +LD S LVK
Sbjct: 312 TASTMFESETFDRILVDAPCSGFGVLRRKPDIKYAKTEKDIHKLAEIQLAILDDVSQLVK 371
Query: 457 PGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDF--VTKHGFFFSDPIKH 514
G+LVYSTC+ID EENE + AFL +HPEF+++P ++P + K F P
Sbjct: 372 ENGILVYSTCTIDKEENETVLRAFLEKHPEFALEPV--VLPEKLAQIKKDDFVQLLPTDI 429
Query: 515 SLDGAFAARL 524
DG F + L
Sbjct: 430 GSDGFFVSSL 439
>gi|332799419|ref|YP_004460918.1| sun protein [Tepidanaerobacter acetatoxydans Re1]
gi|438002578|ref|YP_007272321.1| Ribosomal RNA small subunit methyltransferase B [Tepidanaerobacter
acetatoxydans Re1]
gi|332697154|gb|AEE91611.1| sun protein [Tepidanaerobacter acetatoxydans Re1]
gi|432179372|emb|CCP26345.1| Ribosomal RNA small subunit methyltransferase B [Tepidanaerobacter
acetatoxydans Re1]
Length = 448
Score = 204 bits (520), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 133/428 (31%), Positives = 219/428 (51%), Gaps = 17/428 (3%)
Query: 104 TKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVK 163
T D+ +D LVT++V G ++ +D++I + S + P + +R+G Y+
Sbjct: 30 TSDMSLKDRALVTELVNGVVQNLLRIDYIISQFSKID--LSKISPFVKNAIRVGIYQTFF 87
Query: 164 LD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARA 222
LD +P +A V+E+V L K A N N ILR ++ +D P + +
Sbjct: 88 LDRVPDFAAVNESVSLVKKYEGKRAANFTNAILRNVLRKRDKIVYP-----NKNINIEKY 142
Query: 223 LATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLK 282
L+ YS P W+++RW + + +L + N P +R N+ R +L QL+
Sbjct: 143 LSIYYSFPSWLIQRWIELFDKNFTEELCMALNERPKPCIRVNTLVA-DREELEKQLSAEG 201
Query: 283 LQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 342
+V L +E + + + Q +GL A QDES+ + + ++D
Sbjct: 202 ARVAP--GLFTEETLYILDS-PPIAQLESFNKGLFAPQDESSIIASLAAGVKSNDKVLDV 258
Query: 343 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN 402
AAPGGKT +MA+ + +G + A DI+ R+R++ + + + V+ + + + N
Sbjct: 259 AAAPGGKTAHMAAIMQNKGEIIAWDIHPHRVRLIEQNCRRLKATIVVPEVR-NAKIPDKN 317
Query: 403 STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLV 462
K DKV++DAPCSGLGV+ ++ D++W+++ ED+ LK Q E+L+ S VKPGG L+
Sbjct: 318 MFRKFDKVIIDAPCSGLGVIRRKPDIKWSKKPEDITALKSEQKEILEVCSKYVKPGGFLI 377
Query: 463 YSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVP----SDFVTKHGFFFSDPIKHSLDG 518
YSTCSI+PEENE+ V+ FL ++ F D +P + +G+ P H DG
Sbjct: 378 YSTCSIEPEENEKNVDEFLAKNDSFIYDDLRPYLPEKLHNSLKQSYGYITLYPNIHGTDG 437
Query: 519 AFAARLVR 526
F ARL R
Sbjct: 438 FFIARLKR 445
>gi|332685780|ref|YP_004455554.1| ribosomal RNA small subunit methyltransferase B [Melissococcus
plutonius ATCC 35311]
gi|332369789|dbj|BAK20745.1| ribosomal RNA small subunit methyltransferase B [Melissococcus
plutonius ATCC 35311]
Length = 453
Score = 204 bits (519), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 139/422 (32%), Positives = 230/422 (54%), Gaps = 35/422 (8%)
Query: 70 RIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYL 129
RI GGA+++LL NEM ++ L ++D RL T+IV GTI + L
Sbjct: 22 RIDKGGAYSNLLL--------NEM--------IQSSQLGEKDSRLFTEIVYGTISRKLLL 65
Query: 130 DHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAG 188
++ + H K +E + +L + FY+++ LD +P +AV++E V +AK G G
Sbjct: 66 EYYLDTFIHKRK---KVEHWVRMLLILSFYQLLYLDKVPDHAVINEAVEIAKRRGNLGTG 122
Query: 189 NLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIK 248
VNGILR L LP L+ R L+ S P+W+V++ + LG+ E K
Sbjct: 123 KFVNGILRSL------QRRGLPSLDEISDPIER-LSIEISMPLWLVKKLIQQLGETETKK 175
Query: 249 LMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQ 308
L + S R +SRK ++R D ++QL ++ E + I K L
Sbjct: 176 LGLSLFEKSHVSGRIDSRK-ISRFDAIIQLQKEGIEAS-ESPISPYGIIAEKGRLAT--- 230
Query: 309 AGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLS--GQGLVYAI 366
+ L +EG +QDES+ L + ++D CAAPGGKT ++A+ L+ QG + A+
Sbjct: 231 SSLFREGKLTIQDESSMLAAPTLQIDESNQVLDACAAPGGKTTHIATFLNQQKQGKIIAL 290
Query: 367 DINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-NSTVKCDKVLLDAPCSGLGVLSKR 425
DI+ +L+++ E A QV+S+I+ D R + + D++L+DAPCSGLG++ ++
Sbjct: 291 DIHDHKLKLIKENAVRMQVSSIIKLEKLDARKVKEVYPSEYFDRILVDAPCSGLGLMRRK 350
Query: 426 ADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHP 485
D+++ + L+D+++L +Q+E++++ +K GG+L YSTC+I EEN+ + FL +HP
Sbjct: 351 PDIKYRKTLQDIKKLAKIQEEIIESVVPTLKKGGILTYSTCTITQEENQHVIITFLKKHP 410
Query: 486 EF 487
EF
Sbjct: 411 EF 412
>gi|434388910|ref|YP_007099521.1| ribosomal RNA small subunit methyltransferase RsmB [Chamaesiphon
minutus PCC 6605]
gi|428019900|gb|AFY95994.1| ribosomal RNA small subunit methyltransferase RsmB [Chamaesiphon
minutus PCC 6605]
Length = 468
Score = 204 bits (519), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 149/432 (34%), Positives = 223/432 (51%), Gaps = 25/432 (5%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPY 169
D L T++V G IR +R LD +I L ++ P L Q+LR+G Y++ LD +P
Sbjct: 37 DRNLFTELVNGIIRRKRTLDAIIDRLA--KQPAHRQPPDLRQLLRLGLYQLRYLDRIPAS 94
Query: 170 AVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSH 229
A V+ V LAK G +VNGILR+ + L+ S ++ L T++S
Sbjct: 95 AAVNTTVDLAKANGLTGLAGVVNGILRQYIRLQTERS----EVLDLSTDPIERLGTLHSF 150
Query: 230 PVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRK-------GVTRADLVMQLNLLK 282
P W+V +W LG+ E +L N PS LR NS ++ D +
Sbjct: 151 PDWLVAQWFAELGELETDRLCQAFNRPPSIDLRINSLTIDPNLLASASKFDRIQAQRTKL 210
Query: 283 LQVPHELSLHLDEFIRVKTGLQNVIQAGLL------KEGLCAVQDESAGLVVAVVDPQPG 336
+++ + V GL+ V G + +EG +QD SA LV ++ PQP
Sbjct: 211 IELFQAADIKAVPIPHVPQGLRFVGNVGAIDRLPGYREGWWTIQDSSAQLVTHLLAPQPN 270
Query: 337 QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADL 396
+ ++D CAAPGGKT ++A + G V A+D RL+ L + Q+++ I+ I D
Sbjct: 271 EIVIDACAAPGGKTTHIAELMGNTGQVLALDKTASRLKKLQQNLDRLQLSN-IKVITGDS 329
Query: 397 RTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVK 456
F++ T D+VLLDAPCSGLG L +RAD RW + + EL LQ +LL + VK
Sbjct: 330 CGFSE-LTNTADRVLLDAPCSGLGTLHRRADARWQKTPAQIHELAQLQAQLLANTATWVK 388
Query: 457 PGGVLVYSTCSIDPEENEERVEAFLLRHPEFSID--PADGLVPSDFVTKHGFFFSDPIKH 514
PGGVLVY+TC++ P ENE+ + FL HP++ I+ P+D + S V++ G+ +
Sbjct: 389 PGGVLVYATCTVCPIENEDVILPFLKTHPDWQIELPPSDSPL-SGLVSEPGWIKVWLHRQ 447
Query: 515 SLDGAFAARLVR 526
+DG F +L R
Sbjct: 448 QMDGFFMVKLRR 459
>gi|291526150|emb|CBK91737.1| ribosomal RNA small subunit methyltransferase RsmB [Eubacterium
rectale DSM 17629]
Length = 469
Score = 204 bits (519), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 132/423 (31%), Positives = 212/423 (50%), Gaps = 30/423 (7%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L +D +T +V GTI + LD++I + M+P + +LR+ Y+I +D
Sbjct: 73 LSKQDRAFMTRLVDGTIEYMLQLDYIIDSFS--KTKVRKMKPFIRNLLRMSVYQIKYMDA 130
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P AV +E V+LAK VNG+LR + D Q L+
Sbjct: 131 VPDSAVCNEAVKLAKRHKFAQLSGFVNGVLRNIA-------------RNIDSVQFDTLSI 177
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRAN-SRKGVTRADLVMQLNLLKLQ 284
YS P W+V R+ G+++A ++ ++ + S+R N +R ++ + +
Sbjct: 178 RYSMPQWIVDRFVAAYGEKKAEEIFKAFHNKSTISIRTNLTRCTPDELRATLEAEGVTVT 237
Query: 285 VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 344
EL+ + V +G + ++GL VQD S+ LV P+ G ++D CA
Sbjct: 238 AVDELN-----YAFVISGFDYLNGLQSFRDGLFYVQDISSMLVAQTAAPKKGDYVIDVCA 292
Query: 345 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNST 404
APGGK+ ++A L G G V+A D+ ++ ++ E H +N++ + D F +S
Sbjct: 293 APGGKSTHIAELLRGSGHVFARDLTDNKVDMIEENIDRHGLNNMSAEVW-DATVFDADSA 351
Query: 405 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464
K D ++ D PCSGLGVL ++ D+R+ E ++EL +LQ ++LD VKP GVLVYS
Sbjct: 352 GKADILICDLPCSGLGVLGRKKDIRYKMTPESVDELVVLQRQILDTVHTYVKPNGVLVYS 411
Query: 465 TCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARL 524
TC+ID ENE+ V F+ +HPEF +D + F G P +H DG F AR
Sbjct: 412 TCTIDEAENEDNVRWFIEKHPEFELDKS-------FAEGTGMKQILPGEHGSDGFFIARF 464
Query: 525 VRA 527
+++
Sbjct: 465 IKS 467
>gi|257868127|ref|ZP_05647780.1| sun protein [Enterococcus casseliflavus EC30]
gi|257874598|ref|ZP_05654251.1| sun protein [Enterococcus casseliflavus EC10]
gi|257802241|gb|EEV31113.1| sun protein [Enterococcus casseliflavus EC30]
gi|257808762|gb|EEV37584.1| sun protein [Enterococcus casseliflavus EC10]
Length = 452
Score = 204 bits (519), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 151/476 (31%), Positives = 251/476 (52%), Gaps = 68/476 (14%)
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVG 120
R V+ L+RI+ GGA+++LL ++ G L+D+D RL+T++V
Sbjct: 13 RFVALEALLRIEKGGAYSNLLLRELMNQGR----------------LNDKDGRLLTELVY 56
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLA 179
GTI + LD+ + K ++P + +LR+ Y+++ LD +P +A++ E V +A
Sbjct: 57 GTISRQLLLDYYLDRFI---KNARKVDPWVKTLLRLSLYQMLYLDKVPAHAIIHEAVDIA 113
Query: 180 KVALRPGAGNLVNGILRK--------LVLLKDNNSLPLPKLEGNDRAQARALATIYSHPV 231
K PG G VNG+LR L L+KD P+ +L AT S P+
Sbjct: 114 KAKGNPGTGKFVNGVLRTIQRQGVPDLALIKD----PMERL-----------ATEISLPL 158
Query: 232 WMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV-PHELS 290
W+ ++ K +G EE +L + +P+ + + +++A + +L + P ELS
Sbjct: 159 WLTKKLVKQIGIEETSELG-YALFEPNHASGRIDLQRISQAAAIERLQEEGIDARPSELS 217
Query: 291 LHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKT 350
+ + G + + L KEGL +QDES+ LV V+ ++D CAAPGGKT
Sbjct: 218 PY---GVVADKGF--MAGSSLYKEGLLTIQDESSMLVAPVLQVARDHQVLDACAAPGGKT 272
Query: 351 LYMASCLSGQ--GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVKC 407
++A+ LS G V A+DI+ +++++ + A+ V +V+ T D R A + +
Sbjct: 273 THIAAFLSAAEGGKVTALDIHAHKVKLIQQNAQRLGVEAVVETRVMDARETAQTFAPEQF 332
Query: 408 DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467
D +L+DAPCSGLG++ ++ D+++++ D + L +Q E+L++A+ +K G++VYSTC+
Sbjct: 333 DSILVDAPCSGLGLMRRKPDIKYSKTEADFQRLPQIQREILESAAPTLKKSGIMVYSTCT 392
Query: 468 IDPEENEERVEAFLLRHPEFSIDP-ADG-------------LVPSDFVTKHGFFFS 509
I EEN++ V AFL HPEF P A G + P DF+T GFF S
Sbjct: 393 ILAEENQQVVAAFLADHPEFEQMPLAVGPLAAEAVQEDMLTIYPQDFMTD-GFFIS 447
>gi|443632757|ref|ZP_21116936.1| RNA-binding Sun protein [Bacillus subtilis subsp. inaquosorum KCTC
13429]
gi|443347580|gb|ELS61638.1| RNA-binding Sun protein [Bacillus subtilis subsp. inaquosorum KCTC
13429]
Length = 447
Score = 204 bits (518), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 120/391 (30%), Positives = 221/391 (56%), Gaps = 18/391 (4%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
++ +L D+D L+T++V GT++ + LD+++ + + ++P ++Q+LR+ Y++
Sbjct: 32 IKSNELSDQDRGLLTELVYGTLQNKIALDYMLKPFINKPQ---KVKPWVIQLLRLSLYQM 88
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
L+ +P A + E V +AK+ G + VNG+LR + +P + +
Sbjct: 89 EYLEKIPERAAIHEAVEIAKIRGHKGIASFVNGVLRSI------QREGVPSFDAIEDP-V 141
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
R LAT SHP W+V+ W G + A K+ + P +LR N K + RADL+ Q+
Sbjct: 142 RRLATETSHPEWLVKEWADAYGFDAAEKICRIHLIPPKQTLRVNQMK-IDRADLLNQMAA 200
Query: 281 LKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIV 340
++V E ++ +++ G ++ + G ++QDES+ LV +DP+PG++++
Sbjct: 201 EGIEV--EKGDLAEDAVKLLKG--SIAGTHFFQNGEVSIQDESSMLVARALDPKPGETVL 256
Query: 341 DCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 400
D CAAPGGK+ ++ + +G V ++D++K +++++ E A + ++I D R
Sbjct: 257 DACAAPGGKSAHIGELMENKGSVTSLDLHKHKVKLIKEAADRLGL-TIIEAKTMDARKAG 315
Query: 401 DN-STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGG 459
+ + D++L+DAPCSG GV+ ++ D+++ ++ +D L +Q +L + LVK GG
Sbjct: 316 ETFENGQFDRILVDAPCSGFGVIRRKPDMKYTKKPDDSARLAEIQLSILREIAPLVKKGG 375
Query: 460 VLVYSTCSIDPEENEERVEAFLLRHPEFSID 490
LVYSTC++D ENEE + AF+ HP+F D
Sbjct: 376 TLVYSTCTMDRTENEEVIHAFIQEHPDFEPD 406
>gi|323489537|ref|ZP_08094764.1| ribosomal RNA small subunit methyltransferase B [Planococcus
donghaensis MPA1U2]
gi|323396668|gb|EGA89487.1| ribosomal RNA small subunit methyltransferase B [Planococcus
donghaensis MPA1U2]
Length = 450
Score = 204 bits (518), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 130/414 (31%), Positives = 224/414 (54%), Gaps = 27/414 (6%)
Query: 114 LVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVV 172
L+T+I GT++ + LD+ + + +E + +LR+ Y+IV LD +P +AVV
Sbjct: 48 LLTEITYGTLQHQMTLDYYL-----EPYLKGKIESWVKILLRLSLYQIVYLDRIPAHAVV 102
Query: 173 DENVRLAKVALRPGAGNLVNGILRKLVL--LKDNNSLPLPKLEGNDRAQARALATIYSHP 230
E V +AK G ++VNG+LR + ++ N++ P ++ SHP
Sbjct: 103 HEAVEIAKRRGHGGVASVVNGVLRSVQRSGVRSFNTISDP---------YEKISIETSHP 153
Query: 231 VWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELS 290
WM+RRW + G E+ ++ + NN P ++R N+ + + M L ++ E S
Sbjct: 154 EWMIRRWAEQFGLEKTREMALENNKTPLQTVRVNTVRATVEEAIEM---LESEELEAEPS 210
Query: 291 LHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKT 350
+ E + V G + ++G +QDES+ L + +PG +++D CAAPGGKT
Sbjct: 211 KMIPECLVVTNG--QPARTTTFEKGFITIQDESSMLPAYALQVEPGMTVLDMCAAPGGKT 268
Query: 351 LYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVKCDK 409
++A ++ G +YA+D+++ ++++++E A+ ++VI T D + + K D+
Sbjct: 269 THIAEKMNNSGTLYALDLHQHKVKLIDENAE-RLGHTVIETTVGDGKQSVERFGEEKFDR 327
Query: 410 VLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSID 469
+L+DAPCSGLGV+ ++ D+++ ++ +D L+ +Q ELLD A+ L+K G+LVYSTC++D
Sbjct: 328 ILVDAPCSGLGVIKRKPDIKYTKKEQDFARLQEIQIELLDQAARLLKEDGILVYSTCTVD 387
Query: 470 PEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKH-GFFFSDPIKHSLDGAFAA 522
EN E FL HPE ++ +P KH GF P + DG F A
Sbjct: 388 AVENRGTAERFLKEHPE--MEKIQVALPDLMGIKHTGFVQVFPQDYGSDGFFIA 439
>gi|16801002|ref|NP_471270.1| hypothetical protein lin1936 [Listeria innocua Clip11262]
gi|423098731|ref|ZP_17086439.1| ribosomal RNA small subunit methyltransferase B [Listeria innocua
ATCC 33091]
gi|16414437|emb|CAC97166.1| lin1936 [Listeria innocua Clip11262]
gi|370794558|gb|EHN62321.1| ribosomal RNA small subunit methyltransferase B [Listeria innocua
ATCC 33091]
Length = 446
Score = 204 bits (518), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 142/430 (33%), Positives = 237/430 (55%), Gaps = 28/430 (6%)
Query: 101 GFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEP--LLLQILRIGF 158
+ + L+ D L+T++V GT + + LD+ + F + EP + +LR+
Sbjct: 32 ALKKQKLNPLDKGLLTELVYGTTQRKITLDYYLA-------PFLNKEPDNWVKNLLRMSV 84
Query: 159 YEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDR 217
Y++ LD +P +A+++E +AK G VNG+LR V+ K S+ L K D
Sbjct: 85 YQLTFLDKVPEHAILNEAGDIAKDLGHQGVTKFVNGVLRN-VIRKGVPSIDLIK----DP 139
Query: 218 AQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQ 277
Q A+ T S P W+ RRW G E+ ++ + P S+R N + + L+ +
Sbjct: 140 VQKIAVET--SLPEWLARRWADQYGLEKLREIGLAFLVAPHQSIRVNQTE-IRAEQLIKE 196
Query: 278 LNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQ 337
LN + + +DE + V+ G +V + K+G C++QDES+ LV + +
Sbjct: 197 LNDQGITATR--NEFIDEALLVEKG--SVAETKAYKDGKCSIQDESSMLVAYALQLEDNL 252
Query: 338 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR 397
+++D CAAPGGKT ++A + G G+V+A+DI++ + +++++ AK Q+ + IRT H D R
Sbjct: 253 TVLDACAAPGGKTTHIAEKMHGTGMVHALDIHEKKTKLIDQAAKRLQLLN-IRTAHLDAR 311
Query: 398 TFADNSTVKC-DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVK 456
T + + D++L+DAPCSG GVL ++ D+++ + +D+ +L +Q +LD S LVK
Sbjct: 312 TASTMFEPETFDRILVDAPCSGFGVLRRKPDIKYAKTEKDIHKLAEIQLAILDDVSQLVK 371
Query: 457 PGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDF--VTKHGFFFSDPIKH 514
G+LVYSTC+ID EENE + AFL +HPEF+++P ++P + K F P
Sbjct: 372 ENGILVYSTCTIDKEENETVLRAFLEKHPEFALEPV--VLPEKLAQIKKDDFVQLLPTDI 429
Query: 515 SLDGAFAARL 524
DG F + L
Sbjct: 430 GSDGFFVSSL 439
>gi|302392192|ref|YP_003828012.1| sun protein [Acetohalobium arabaticum DSM 5501]
gi|302204269|gb|ADL12947.1| sun protein [Acetohalobium arabaticum DSM 5501]
Length = 448
Score = 204 bits (518), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 138/429 (32%), Positives = 230/429 (53%), Gaps = 21/429 (4%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
F+ +L D+D L T+++ G++R R +LD ++ ++ + M+ ILR+G Y+I
Sbjct: 31 FKKYNLADQDRGLATELIYGSLRMRNHLDWILNQFA--DRRVNKMDKWTRNILRLGLYQI 88
Query: 162 VKLDMPPYAVV-DENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
LD P AV +E V LAK GA VNGILR + L+ + + P+L+ N
Sbjct: 89 RFLDSIPDAVACNETVELAKDYQHSGAAGFVNGILRSI--LRSLDEIEFPQLKSNPVQHI 146
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
R YS P WMV W K G E + + N PS +R N R VT +L Q +L
Sbjct: 147 RYK---YSFPQWMVETWVKRYGVELTVDICSAFNQIPSKIIRQN-RLKVTAEEL--QADL 200
Query: 281 LKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIV 340
+ + E + + RV T ++ Q+ G +Q ++ + +++PQP ++
Sbjct: 201 ASVGIETEAISEIPQAFRV-TNSSSLFQSNSFTAGYFQIQGLASIIAGHIMNPQPKDIVL 259
Query: 341 DCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 400
D C+APGGKT ++A ++ QG + A D+++ +L ++ + ++RT D R+
Sbjct: 260 DLCSAPGGKTTHLAELMANQGEIVANDLHEDKLELIERNCNRLGIR-IVRTRAGDGRSLK 318
Query: 401 DNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGV 460
K D++L+DAPCSGLG+++K+ +++W ++ +D++ L LQ ELL+ A +KP G
Sbjct: 319 FEK--KFDRILVDAPCSGLGMIAKKPEIKWQKKPQDIDSLAELQLELLNNAGRFLKPKGE 376
Query: 461 LVYSTCSIDPEENEERVEAFLLRHPEFSI----DPADGL-VPSDFVTKHGFFFSDPIKHS 515
LVYSTC+I +EN E + FL ++ +F + AD L + S+F+ + G P +
Sbjct: 377 LVYSTCTITHQENLEVINKFLAQNSDFELVDLSSWADKLGISSEFILE-GSIQLLPTWQT 435
Query: 516 LDGAFAARL 524
+G F A+L
Sbjct: 436 NEGFFIAKL 444
>gi|212639615|ref|YP_002316135.1| rRNA cytosine-C5-methylase [Anoxybacillus flavithermus WK1]
gi|212561095|gb|ACJ34150.1| rRNA cytosine-C5-methylase [Anoxybacillus flavithermus WK1]
Length = 446
Score = 204 bits (518), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 131/394 (33%), Positives = 219/394 (55%), Gaps = 26/394 (6%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
T +L +D+ L+T++V GTI+ R LD+ + ++EP + +LR+ Y++
Sbjct: 30 IETNELSAQDVALLTELVYGTIQRRDTLDYYLQPFIK-----GNIEPWVRLLLRMSLYQM 84
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
+ LD +P AV+ E V +AK G +LVNGILR V + SL K D ++
Sbjct: 85 IYLDRIPDRAVLFEAVEIAKRRGHRGIASLVNGILRS-VQRQGLRSLDDIK----DESER 139
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
A+AT SHP+W+VRRW + G +E ++ NN P + R N V RA + ++
Sbjct: 140 LAIAT--SHPLWLVRRWIEQFGFDETKRMCEVNNFPPEQTARVN----VMRATVEEVIDR 193
Query: 281 LKLQ----VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPG 336
LK + +P + I K N + + +EGL +QDES+ LV + P
Sbjct: 194 LKEEGIEAIPSSVVP-----IGTKITKGNAAKTSVFREGLITIQDESSMLVAYALSPNET 248
Query: 337 QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADL 396
++DCCAAPGGKT ++A ++ +G V A+DI+ +++++ + AK ++++
Sbjct: 249 DVVLDCCAAPGGKTTHIAERMNNRGRVVALDIHDHKVKLIEQQAKRLGLSNIEAKQLDSR 308
Query: 397 RTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVK 456
+ + D++L+DAPCSGLGV+ ++ ++++ + +D+ +L +Q +L A + L+K
Sbjct: 309 QAHTQFAAETFDRILVDAPCSGLGVIRRKPEIKYAKNEKDITQLANVQLNILRAVAPLLK 368
Query: 457 PGGVLVYSTCSIDPEENEERVEAFLLRHPEFSID 490
GG LVYSTC++D EENE+ + FL HPE+ D
Sbjct: 369 RGGTLVYSTCTVDREENEQVIAQFLAEHPEYDRD 402
>gi|407477614|ref|YP_006791491.1| ribosomal RNA small subunit methyltransferase B [Exiguobacterium
antarcticum B7]
gi|407061693|gb|AFS70883.1| Ribosomal RNA small subunit methyltransferase B [Exiguobacterium
antarcticum B7]
Length = 442
Score = 204 bits (518), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 132/429 (30%), Positives = 231/429 (53%), Gaps = 35/429 (8%)
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVG 120
R + L++I GGAF+ + V + L R + D+ L T++V
Sbjct: 4 RDAAVTTLLKIGQGGAFSTI--------------SVHQMLEKRA--IAKADVGLYTELVY 47
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLA 179
GT+ LD+++ +K ++P + +LR+ Y++ LD +P +AV++E V +A
Sbjct: 48 GTLSRELTLDYILEPFLASQK---KLDPFMRPLLRMSVYQLFYLDRIPDHAVINEAVEIA 104
Query: 180 KVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTK 239
K +P +VNG+LR VL K + + ++ SHP W+V RW +
Sbjct: 105 KTRGKPHIAKVVNGVLRN-VLRKGKPDF------STISSTVQRISIETSHPAWLVERWIE 157
Query: 240 YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQ-VPHELSLHLDEFIR 298
G++E ++ NN ++R N R RAD + LL+ Q V +L+ + +
Sbjct: 158 LFGEDETWQMCRLNNEPAPVTVRVNQR----RADRQEMIQLLEEQGVIAKLAHAAPDGLE 213
Query: 299 VKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLS 358
+ +G +V Q LL+ G ++QDES+ LV + V Q ++D CAAPGGK +++A L+
Sbjct: 214 IISG--SVQQTDLLERGYLSLQDESSMLVASAVGAQVSDRVLDSCAAPGGKAMHIAEGLT 271
Query: 359 GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSG 418
G ++A+D++ ++++L + AK + +V + + + D++L+DAPCSG
Sbjct: 272 -TGSLFALDLHPHKVKLLEKQAKRLGLETVQTDVLDARQAGSRFDPASFDRILVDAPCSG 330
Query: 419 LGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVE 478
LGV+ ++ D++W +R ED+ +L ++Q ++++A LVK GG VYSTC++DP ENE++ E
Sbjct: 331 LGVIRRKPDIKWTKRPEDLTQLPVIQRQIIEAVLPLVKTGGTFVYSTCTMDPLENEQQTE 390
Query: 479 AFLLRHPEF 487
L + EF
Sbjct: 391 YILSQGFEF 399
>gi|158338705|ref|YP_001519882.1| ribosomal RNA small subunit methyltransferase B [Acaryochloris
marina MBIC11017]
gi|158308946|gb|ABW30563.1| ribosomal RNA small subunit methyltransferase B [Acaryochloris
marina MBIC11017]
Length = 443
Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 149/425 (35%), Positives = 222/425 (52%), Gaps = 21/425 (4%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
K + D D RL+T+++ G++R +R LD LI +K P L +L +G Y++ L
Sbjct: 32 KTIADADRRLLTELLYGSVRRQRTLDALIDQFA--KKPAHQQPPDLRTLLHLGLYQLRFL 89
Query: 165 D-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARAL 223
D +P A + V LAK G VNG+LR+ N + PL +L + + L
Sbjct: 90 DHIPDAAAIFTTVELAKQNQLSGLSGFVNGLLRQYARAAANLNDPL-ELPPDP---IQHL 145
Query: 224 ATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQL---NL 280
+YS+P W+V+ W LG EE KL + N P LR NS K R + QL +
Sbjct: 146 GILYSYPDWIVQVWHDQLGSEETEKLCDYCNQPPHIDLRINSLK-TDRESVRSQLASAGV 204
Query: 281 LKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIV 340
+PH L + +R++ + Q +EGL VQ+ SA LV +++PQPG +
Sbjct: 205 TTTPLPH-----LPQALRIEGKSGPIPQLPGFQEGLWTVQEASAQLVGHLLNPQPGAIAL 259
Query: 341 DCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 400
D CAAPGGKT ++A + QG V+A D RLR LN+ + +++V TI
Sbjct: 260 DVCAAPGGKTTHIAELMENQGEVWACDRTPSRLRKLNQNTQRLGIDTV--TIWTGDSRQL 317
Query: 401 DNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGV 460
N D VL+DAPCSGLG L + AD RW + +++++L LQ +LL ++ VKPGG+
Sbjct: 318 SNHIPLADYVLVDAPCSGLGTLHRHADARWQQTPDNIQDLSTLQLDLLLNSARRVKPGGI 377
Query: 461 LVYSTCSIDPEENEERVEAFLLRHPEFSI-DPADGLVPSDFVTKHGFFFSDPIKHSLDGA 519
L+YSTC++ P ENE ++ FL + P++ P VP+ P + ++DG
Sbjct: 378 LLYSTCTLHPLENENIIDQFLAQMPQWQTQQPIAEWVPTSGPQSSVKIL--PHQQNMDGF 435
Query: 520 FAARL 524
F A L
Sbjct: 436 FMAIL 440
>gi|296331149|ref|ZP_06873623.1| RNA-binding Sun protein [Bacillus subtilis subsp. spizizenii ATCC
6633]
gi|305674305|ref|YP_003865977.1| RNA-binding Sun protein; 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Bacillus subtilis
subsp. spizizenii str. W23]
gi|296151793|gb|EFG92668.1| RNA-binding Sun protein [Bacillus subtilis subsp. spizizenii ATCC
6633]
gi|305412549|gb|ADM37668.1| RNA-binding Sun protein; 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Bacillus subtilis
subsp. spizizenii str. W23]
Length = 447
Score = 203 bits (517), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 121/391 (30%), Positives = 221/391 (56%), Gaps = 18/391 (4%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
++ +L D+D L+T++V GT++ + LD+++ + + ++P ++Q+LR+ Y++
Sbjct: 32 IKSNELSDQDRALLTELVYGTLQNKIALDYMLKPFINKPQ---KVKPWVIQLLRLSLYQM 88
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
L+ +P A + E V +AK+ G + VNG+LR + +P + +
Sbjct: 89 EYLEKIPDRAAIHEAVEIAKIRGHKGIASFVNGVLRSI------QREGVPSFDAIEDP-V 141
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
R LAT SHP W+V+ WT G + A K+ + P +LR N K RADL+ Q+
Sbjct: 142 RRLATETSHPEWLVKEWTDAYGFDAAEKICRIHLIPPRQTLRVNQMKA-DRADLLDQMAA 200
Query: 281 LKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIV 340
++V E ++ +++ G ++ + G ++QDES+ LV +DP+PG++++
Sbjct: 201 EGIEV--ENGDLAEDAVKLLKG--SIAGTHFFQNGEVSIQDESSMLVARALDPKPGETVL 256
Query: 341 DCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 400
D CAAPGGK+ ++ + +G V ++D++K +++++ E A + ++I D R
Sbjct: 257 DACAAPGGKSAHIGELMENKGSVTSLDLHKHKVKLIKEAADRLGL-TIIDAKTMDARKAG 315
Query: 401 DN-STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGG 459
+ + D++L+DAPCSG GV+ ++ D+++ ++ +D L +Q +L + LVK GG
Sbjct: 316 ETFENGQFDRILVDAPCSGFGVIRRKPDMKYTKKPDDSTRLAEIQLSILREIAPLVKKGG 375
Query: 460 VLVYSTCSIDPEENEERVEAFLLRHPEFSID 490
LVYSTC++D ENEE + AF+ HP+F D
Sbjct: 376 TLVYSTCTMDRTENEEVIHAFIQEHPDFEPD 406
>gi|403667672|ref|ZP_10932972.1| ribosomal RNA small subunit methyltransferase B [Kurthia sp. JC8E]
Length = 454
Score = 203 bits (517), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 137/427 (32%), Positives = 226/427 (52%), Gaps = 41/427 (9%)
Query: 110 RDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPP 168
+D L+T++ GT++ + LD + + ++P + +LR+ Y+I LD +P
Sbjct: 47 KDRGLLTELTYGTLQHKLTLDFYL-----EPYVRGKLDPWVRWVLRLALYQIAYLDKIPD 101
Query: 169 YAVVDENVRLAKVALRP-GAGNLVNGILRKLVL--LKDNNSLPLPKLEGNDRAQARALAT 225
+A V+E V +AK R G + VNGILR ++ L+D + P A ++
Sbjct: 102 HAAVNEAVEIAKHRARHRGVSSTVNGILRSILRNGLRDTTEIKDP---------AVRISV 152
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
SHP W+VRR+ G E +++ NN P ++R N+ K TR L L + +
Sbjct: 153 ETSHPEWLVRRYIDGFGVEVTEDMLIENNLPPLQTVRVNATKADTRGGLEA---LWEEKF 209
Query: 286 PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAA 345
S ++ E + V G ++ +EG+ +QDES+ + +D QPG + D CAA
Sbjct: 210 AVRRSENIPECLHVLEG--QPARSKAFEEGVITIQDESSMIPAYALDVQPGMRVYDMCAA 267
Query: 346 PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTV 405
PGGKT ++A ++ +G V A D++K ++++++E+AK + S+I D R +
Sbjct: 268 PGGKTTHIAEKMNNEGTVIATDLHKHKIKLVDESAKRLGL-SIIEAQMLDGRKATEQFEK 326
Query: 406 KC-DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464
+ D++L+DAPCSGLGV+ ++ D+++ + D E L +Q +LLD+A L+KP G +VYS
Sbjct: 327 QSFDRILVDAPCSGLGVIRRKPDIKYTKSESDFESLHKIQLDLLDSAYELLKPQGKMVYS 386
Query: 465 TCSIDPEENEERVEAFLLRHPEFSIDPADG---------------LVPSDFVTKHGFFFS 509
TC+ID EN VEAFL +H + + P + + P DF GFF +
Sbjct: 387 TCTIDKMENNGTVEAFLAKHTDMMLAPVENAPEVLTTLREQGMMQVFPQDF-NSDGFFVA 445
Query: 510 DPIKHSL 516
+K SL
Sbjct: 446 SFVKKSL 452
>gi|149182346|ref|ZP_01860824.1| sun protein [Bacillus sp. SG-1]
gi|148849965|gb|EDL64137.1| sun protein [Bacillus sp. SG-1]
Length = 445
Score = 203 bits (516), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 134/415 (32%), Positives = 226/415 (54%), Gaps = 34/415 (8%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPY 169
D L+T++ GTI+ R LD + + + +E + Q+LR+ Y+++ LD +P
Sbjct: 43 DTGLLTELTYGTIQRRMTLDFYLAPFINKK-----IESWVRQLLRLSLYQMIYLDKIPDR 97
Query: 170 AVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSH 229
AV+ E V + K G +++NGILR + + + +E D + A+ T SH
Sbjct: 98 AVLFEAVEIGKRRGHKGIASMINGILRSI---QRKGVAAIESIE--DPVERLAIET--SH 150
Query: 230 PVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHEL 289
P W+V+RWT+ G E+ ++ N + P S R N+ + +T +L+ +L L V +
Sbjct: 151 PQWLVKRWTEQFGIEKTREMCETNITAPHQSARVNTLR-ITVDELIDRLTEEGLTV-QKS 208
Query: 290 SLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGK 349
S+ + I +K N+ + K+GL +QDES+ LV +D +++D CAAPGGK
Sbjct: 209 SIVPNAIISLKG---NLAKTAAFKDGLLTIQDESSMLVGHSLDVHEDFTVLDSCAAPGGK 265
Query: 350 TLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDK 409
T ++A + G+G V+A+D++K +++++NE A + ++ H R + D+
Sbjct: 266 TTHIAQLMEGKGKVFALDLHKHKIKLINENASRLGLGNIESKAHDSRRAGELFAAESFDR 325
Query: 410 VLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSID 469
+L+DAPCSGLGVL ++ D+++ ++ D+E L+ +Q ++L+A S L+K GG+LVYSTC++D
Sbjct: 326 ILVDAPCSGLGVLRRKPDIKYTKKESDLESLQTIQLQILEAVSPLLKKGGLLVYSTCTVD 385
Query: 470 PEENEERVEAFLLRHPEFSIDPADGL---------------VPSDFVTKHGFFFS 509
EN+ V+ FL + EF P L P DF GFF S
Sbjct: 386 RNENQGTVKEFLDGNKEFQPFPLTHLPETVQPFVEGNMLQVFPQDF-GGDGFFIS 439
>gi|399924362|ref|ZP_10781720.1| 16S rRNA methyltransferase B [Peptoniphilus rhinitidis 1-13]
Length = 432
Score = 203 bits (516), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 129/407 (31%), Positives = 210/407 (51%), Gaps = 36/407 (8%)
Query: 94 GYVERTLGFRTKD-LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQ 152
++E +L K +D+RD V +I G +R R YLD++I + + + F+ + ++L
Sbjct: 20 AFLEESLEILKKSRIDERDYNFVKEITTGVVRNRSYLDYVIKI--NSKIKFNRIHRIILS 77
Query: 153 ILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPK 211
IL + Y++ LD +P Y++VDE+V LAK+ G+ NGILR + +P K
Sbjct: 78 ILEMAIYQMYFLDKVPEYSIVDESVNLAKIYGNKGSIAFTNGILRAI----SKEDVPQVK 133
Query: 212 LEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTR 271
+ + L+T YSHP + + G++ KL+ NN PSF++R N+ K R
Sbjct: 134 I----KNSIDNLSTFYSHPKFYTEYFYNNYGEDFTKKLLKANNEKPSFTIRVNTLK-TNR 188
Query: 272 ADLVMQLNLLKLQVPHELSLHLDEFIRVKTGLQN---------VIQAGLLKEGLCAVQDE 322
+L+ SL D F T +N +I + G VQD
Sbjct: 189 EELIK-------------SLTNDGFEIEDTNFKNAINILNPRGIIDTKYFENGEFYVQDL 235
Query: 323 SAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKL 382
+ LV ++P ++D CAAPGGK+ ++A + G + A D +K +++++ E A+
Sbjct: 236 GSILVSTFLNPSKDSKVLDLCAAPGGKSTHLAEIMENTGEIVACDKSKKKIKLIEENARR 295
Query: 383 HQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKI 442
V + I+T D + K D VL+DAPCSG G+ K+ D++WN+ ++D++ L
Sbjct: 296 LGVKN-IKTFVNDAEILNKDFLDKFDYVLVDAPCSGTGLYRKKPDIKWNKDIKDLKNLSE 354
Query: 443 LQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSI 489
+Q ++L+ A +K GG LVYSTCS+ ENE+ V FL + F I
Sbjct: 355 IQLKILENAKNYLKLGGHLVYSTCSLSKIENEDVVYKFLEENENFKI 401
>gi|284802268|ref|YP_003414133.1| hypothetical protein LM5578_2024 [Listeria monocytogenes 08-5578]
gi|284995410|ref|YP_003417178.1| hypothetical protein LM5923_1975 [Listeria monocytogenes 08-5923]
gi|386054077|ref|YP_005971635.1| ribosomal RNA small subunit methyltransferase B [Listeria
monocytogenes Finland 1998]
gi|404413901|ref|YP_006699488.1| tRNA and rRNA cytosine-C5-methylase [Listeria monocytogenes
SLCC7179]
gi|284057830|gb|ADB68771.1| hypothetical protein LM5578_2024 [Listeria monocytogenes 08-5578]
gi|284060877|gb|ADB71816.1| hypothetical protein LM5923_1975 [Listeria monocytogenes 08-5923]
gi|346646728|gb|AEO39353.1| ribosomal RNA small subunit methyltransferase B [Listeria
monocytogenes Finland 1998]
gi|404239600|emb|CBY61001.1| putative tRNA and rRNA cytosine-C5-methylase [Listeria
monocytogenes SLCC7179]
Length = 444
Score = 203 bits (516), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 137/431 (31%), Positives = 236/431 (54%), Gaps = 30/431 (6%)
Query: 101 GFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEP--LLLQILRIGF 158
+ + L+ D L+T++V GT + + LD+ + F + EP + +LR+
Sbjct: 32 ALKKQKLNPLDKGLLTELVYGTTQRKITLDYYLA-------PFLNKEPDNWVKNLLRMSV 84
Query: 159 YEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEG-ND 216
Y++ LD +P +A+++E +AK G VNG+LR ++ +P ++ D
Sbjct: 85 YQLTYLDKVPEHAILNEAGDIAKNMGHQGVTKFVNGVLRNVI------RKGVPSIDAIKD 138
Query: 217 RAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVM 276
Q A+ T S P W+ +RW G E+ ++ + P S+R N + + L+
Sbjct: 139 PVQKIAVET--SLPEWLAKRWADQYGIEQLREIGLAFLVAPHQSIRVNQTE-IPTEQLIK 195
Query: 277 QLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPG 336
+LN + V + ++E + V+ G +V + K+G C++QDES+ L + +
Sbjct: 196 ELNDQGITVTR--NEFIEEALLVEKG--SVAETKAYKDGKCSIQDESSMLAAYALQLEDN 251
Query: 337 QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADL 396
+++D CAAPGGKT ++A + G G+V+A+DI++ + ++++E AK Q+ + IRT H D
Sbjct: 252 LTVLDACAAPGGKTTHIAEKMHGTGMVHALDIHEKKTKLIDEAAKRLQLLN-IRTAHLDA 310
Query: 397 RTFADNSTVKC-DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLV 455
RT + + D++L+DAPCSG GVL ++ D+++ + +D+ +L +Q +LD S LV
Sbjct: 311 RTASTMFEPETFDRILVDAPCSGFGVLRRKPDIKYAKTEKDIHKLAEIQLAILDDVSQLV 370
Query: 456 KPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDF--VTKHGFFFSDPIK 513
K G+LVYSTC+ID EENE + AFL +HPEF+++P ++P + K F P
Sbjct: 371 KENGILVYSTCTIDKEENETVLRAFLEKHPEFTLEPV--VLPEKLAQIKKDDFIQLLPTD 428
Query: 514 HSLDGAFAARL 524
DG F + L
Sbjct: 429 IGSDGFFVSSL 439
>gi|422419438|ref|ZP_16496393.1| ribosomal RNA small subunit methyltransferase B [Listeria seeligeri
FSL N1-067]
gi|313632754|gb|EFR99722.1| ribosomal RNA small subunit methyltransferase B [Listeria seeligeri
FSL N1-067]
Length = 446
Score = 203 bits (516), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 141/430 (32%), Positives = 236/430 (54%), Gaps = 45/430 (10%)
Query: 101 GFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEP--LLLQILRIGF 158
+ + L+ D L+T++V GT + + L + + F + EP + +LR+
Sbjct: 32 ALKKQKLNPLDKGLLTELVYGTTQRKITLXYYLA-------PFLNKEPDNWVKNLLRMSV 84
Query: 159 YEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDR 217
Y++ LD +P +A+++E +AK G VNG+LR V+ K S+ L + D
Sbjct: 85 YQLTFLDKVPEHAILNEAGDIAKDLGHQGVTKFVNGVLRN-VIRKGVPSIDLIQ----DP 139
Query: 218 AQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQ 277
+ A+ T S PVW+ +RW K G E+ ++ + P S+R N + + L+ +
Sbjct: 140 VEKIAVET--SLPVWLAKRWAKQYGNEQLREIGMAFLVAPHQSIRVNQTE-IRTEQLIKE 196
Query: 278 LNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQ 337
LN + V + +DE + V+ G +V + K+G C++QDES+ L + +
Sbjct: 197 LNDQGITVTR--NEFIDEALIVEKG--SVAETKAYKDGKCSIQDESSMLATYALQLEDNL 252
Query: 338 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR 397
+++D CAAPGGKT ++A + G G+V+A+DI++ + ++++ AK Q+ + IRT H D R
Sbjct: 253 TVLDACAAPGGKTTHIAEKMHGTGMVHALDIHEKKTKLIDHAAKRLQLLN-IRTAHLDAR 311
Query: 398 T----FADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASL 453
T FA + D++L+DAPCSG GVL ++ D+++ + +D+ +L +Q +LD S
Sbjct: 312 TASTMFAPET---FDRILVDAPCSGFGVLRRKPDIKYAKTEKDIHKLAEIQLAILDDVSQ 368
Query: 454 LVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPAD--------------GLVPSD 499
LVK G+LVYSTC+ID EENE + AFL +HPEF+++P L+P+D
Sbjct: 369 LVKENGILVYSTCTIDKEENETVLRAFLEKHPEFALEPVALPEKLAHIKKDDFVQLLPTD 428
Query: 500 FVTKHGFFFS 509
+ GFF S
Sbjct: 429 -IGSDGFFVS 437
>gi|282882115|ref|ZP_06290756.1| ribosomal RNA small subunit methyltransferase B [Peptoniphilus
lacrimalis 315-B]
gi|281298145|gb|EFA90600.1| ribosomal RNA small subunit methyltransferase B [Peptoniphilus
lacrimalis 315-B]
Length = 430
Score = 202 bits (515), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 129/412 (31%), Positives = 220/412 (53%), Gaps = 30/412 (7%)
Query: 91 NEMGYVERTLGF-RTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPL 149
N+ ++E L + ++ DRD + +I G IR R YLD++I + + + F + +
Sbjct: 17 NKGAFLEEQLNIIKQSNISDRDFTFIKNITTGVIRNRTYLDYVIKI--NSKIRFKKIHKI 74
Query: 150 LLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLP 208
+ IL + Y+ LD +P Y++VDE+V+LAK+ G+ + VN ILR +V KD
Sbjct: 75 IAIILEMAIYQYYFLDKIPNYSIVDESVKLAKLYGNKGSSSFVNAILRNIVS-KDK---E 130
Query: 209 LPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKG 268
+ K+E L+ YSHP + + + + G E L+ NN +P F +R N+ K
Sbjct: 131 VVKIED----SIENLSVYYSHPKFYTKYFYENYGVELTKNLLKANNQEPDFVIRVNTLK- 185
Query: 269 VTRADLVMQL------NLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDE 322
T+ D + +L N++ VP L + +N+ +EG QD
Sbjct: 186 -TKKDHLYKLLKDENFNVIDGLVPDSLIIE---------NPKNIFDTQAFREGFFYAQDF 235
Query: 323 SAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKL 382
S+ V +++P+ +I+D CAAPGGK+ ++ + L G + A D + +L ++ + AK
Sbjct: 236 SSIKVSQILNPKKNSTILDLCAAPGGKSTHLGAILENTGQIVACDKSLYKLDLIKDNAKR 295
Query: 383 HQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKI 442
V+++ +I+ D + ++ K D L+DAPCS +G+ K+ D++WNR LED++ L
Sbjct: 296 LGVSNIKVSIN-DASKYNNDFEDKFDYCLVDAPCSAIGLYRKKPDIKWNRSLEDIKNLAQ 354
Query: 443 LQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADG 494
+Q +++ A VK GGVL+YSTCS+ ENE ++ FL R+ + I +G
Sbjct: 355 IQKNIINNAGRYVKKGGVLIYSTCSLSYSENEGVIKEFLDRNKNYKILTIEG 406
>gi|255656560|ref|ZP_05401969.1| ribosomal RNA small subunit methyltransferase [Clostridium
difficile QCD-23m63]
gi|296449988|ref|ZP_06891752.1| ribosomal RNA small subunit methyltransferase B [Clostridium
difficile NAP08]
gi|296878369|ref|ZP_06902377.1| ribosomal RNA small subunit methyltransferase B [Clostridium
difficile NAP07]
gi|296261258|gb|EFH08089.1| ribosomal RNA small subunit methyltransferase B [Clostridium
difficile NAP08]
gi|296430667|gb|EFH16506.1| ribosomal RNA small subunit methyltransferase B [Clostridium
difficile NAP07]
Length = 441
Score = 202 bits (515), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 131/429 (30%), Positives = 234/429 (54%), Gaps = 22/429 (5%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
F+ ++ D D L T+++ G I + YLD++I L + M + LR+G Y+I
Sbjct: 29 FKNLEISDIDRGLATELIYGVIENKYYLDYIINKLS--KIKVKKMSTYVKIFLRMGTYQI 86
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
+ LD + YA V+E V+L+K + +G +N ILR + K+ ++ +
Sbjct: 87 LFLDSISDYAAVNETVKLSKKYDKKSSG-FINAILRNEIRAKE------TIMDITEEDSV 139
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLN- 279
+ L+ YS+ W+++ W GQE A L+ N+ PS +R N K ++R +L+ +L+
Sbjct: 140 KYLSIKYSYNSWIIKNWIDKFGQEFAEDLLEANSEKPSIYIRTNMLK-ISREELIEKLSE 198
Query: 280 --LLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQ 337
++ L+VP ++E I+V+ ++N+ + L K GL +QD S+ +V V++P+
Sbjct: 199 MGIVCLKVPM-----VEEAIKVEK-MKNIEKNELFKAGLFTIQDISSMIVGKVINPKEDS 252
Query: 338 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR 397
++D C+APGGK+ ++A+ ++ G V A DI + +L+++ T + +V D
Sbjct: 253 FVLDVCSAPGGKSTHLATLMNNTGQVVARDIFEHKLKLIKSTVNRLGLKNVCVE-RFDAS 311
Query: 398 TFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKP 457
+NS K D VL D PCSGLG++ ++ ++++ ++ E+++++ +Q ++L+ AS VK
Sbjct: 312 EIDENSISKFDYVLADVPCSGLGIIRRKPEIKY-KKEEELKDITSIQKKILENASRYVKV 370
Query: 458 GGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLD 517
GG LVYSTC+I +EN V +F+ + F D D + G+ P H +D
Sbjct: 371 GGTLVYSTCTIQDDENINIVASFVEENHNFEFDSIDTVNVDLDNQDKGYLKIYPNIHGID 430
Query: 518 GAFAARLVR 526
G F A+L R
Sbjct: 431 GFFIAKLKR 439
>gi|326389542|ref|ZP_08211109.1| sun protein [Thermoanaerobacter ethanolicus JW 200]
gi|392940847|ref|ZP_10306491.1| ribosomal RNA small subunit methyltransferase RsmB
[Thermoanaerobacter siderophilus SR4]
gi|325994547|gb|EGD52972.1| sun protein [Thermoanaerobacter ethanolicus JW 200]
gi|392292597|gb|EIW01041.1| ribosomal RNA small subunit methyltransferase RsmB
[Thermoanaerobacter siderophilus SR4]
Length = 444
Score = 202 bits (515), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 130/430 (30%), Positives = 221/430 (51%), Gaps = 23/430 (5%)
Query: 103 RTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIV 162
R+++L + D ++V G I + LD ++ +M L +G Y+++
Sbjct: 30 RSQELKEIDRGFTKELVFGVIERKYTLDFILSFFVKKAPDLKTM-----IFLEMGLYQLL 84
Query: 163 KLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQAR 221
+D +P YA ++E V +AK L N +N +LR K+ P +R +
Sbjct: 85 YMDKVPSYAAINETVNIAKKVLGIKRANFINAVLRNYEREKEKVIFP-----DKERDLKQ 139
Query: 222 ALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLL 281
L YS+P W+V R +E+A L+ N P R N+ K + DL L+
Sbjct: 140 YLKVTYSYPDWIVERLLNNYDEEKAEALLKSLNERPEICYRVNTLK-IDIEDLKRLLD-- 196
Query: 282 KLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVD 341
+ ++ +L+E + + ++N + L KEGL +QDE++ LV ++P+ G +++D
Sbjct: 197 SDGIVYKKGYYLEEALYI--DIKNPERHQLYKEGLIYIQDEASMLVSKTLNPKEGDTVLD 254
Query: 342 CCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD 401
CAAPGGKT ++A + G V A D++ RL ++ E K + +V + TF +
Sbjct: 255 VCAAPGGKTTHIAQLMKNSGEVIAFDLHPHRLELIKENCKRLGITNVKTEVFDS--TFVN 312
Query: 402 NSTV-KCDKVLLDAPCSGLGVLSKRADLRW-NRRLEDMEELKILQDELLDAASLLVKPGG 459
+ K DKVL D PC+G+G++ K+ D++ N +++ EL Q ++LD++S VK GG
Sbjct: 313 EKYLEKADKVLADVPCTGIGIIRKKPDIKLKNYTRKEISELIEAQYKILDSSSKYVKKGG 372
Query: 460 VLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKH---GFFFSDPIKHSL 516
LVYSTC+I EEN+ + FL HP+F + +PS + G+ + P++H +
Sbjct: 373 FLVYSTCTIGKEENQNVIMKFLKEHPDFKLVDIKAEMPSGLSIETDSLGYVQTTPLEHEI 432
Query: 517 DGAFAARLVR 526
DG F ++L R
Sbjct: 433 DGFFISKLKR 442
>gi|116873257|ref|YP_850038.1| sun protein [Listeria welshimeri serovar 6b str. SLCC5334]
gi|116742135|emb|CAK21259.1| sun protein [Listeria welshimeri serovar 6b str. SLCC5334]
Length = 444
Score = 202 bits (515), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 137/428 (32%), Positives = 234/428 (54%), Gaps = 41/428 (9%)
Query: 101 GFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEP--LLLQILRIGF 158
+ + L+ D L+T++V GT + + LD+ + F + EP + +LR+
Sbjct: 32 ALKKQKLNPLDKGLLTELVYGTTQRKITLDYYLA-------PFLNKEPDNWVKNLLRMSV 84
Query: 159 YEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKL-EGND 216
Y++ LD +P +A+++E +AK G VNG+LR ++ +P + E D
Sbjct: 85 YQLTFLDKVPEHAILNEAGDIAKDLGHQGVTKFVNGVLRNVI------RKGVPSIDEVKD 138
Query: 217 RAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVM 276
Q A+ T S P W+ +RW G ++ ++ + P S+R N + + L+
Sbjct: 139 PVQKIAVET--SLPEWLAKRWADQYGVQKLREIGLAFLVAPHQSIRVNQTE-IRTEQLIK 195
Query: 277 QLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPG 336
+LN + V + +DE + V+ G +V + K+G C++QDES+ L + +
Sbjct: 196 ELNDQGITVTQ--NEFIDEALLVEKG--SVAETKAYKDGKCSIQDESSMLAAYALQLEDN 251
Query: 337 QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADL 396
+++D CAAPGGKT ++A + G G+V+A+DI++ + +++++ AK Q+ + IRT H D
Sbjct: 252 LTVLDACAAPGGKTTHIAEKMHGTGMVHALDIHEKKTKLIDQAAKRLQLLN-IRTAHQDA 310
Query: 397 RTFADNSTVKC-DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLV 455
RT + + D++L+DAPCSG GVL ++ D+++ + +D+ +L +Q +LD S LV
Sbjct: 311 RTASTMFEPETFDRILVDAPCSGFGVLRRKPDIKYAKTEKDIHKLAEIQLAILDDVSQLV 370
Query: 456 KPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPAD--------------GLVPSDFV 501
K G+LVYSTC+ID EENE + AFL +HPEFS++P L+P+D +
Sbjct: 371 KENGILVYSTCTIDKEENETVLRAFLEKHPEFSLEPVTLPEKLAHIKKDDFVQLLPTD-I 429
Query: 502 TKHGFFFS 509
GFF S
Sbjct: 430 GSDGFFVS 437
>gi|16329552|ref|NP_440280.1| Fmu and Fmv protein [Synechocystis sp. PCC 6803]
gi|383321293|ref|YP_005382146.1| Fmu and Fmv protein [Synechocystis sp. PCC 6803 substr. GT-I]
gi|383324463|ref|YP_005385316.1| Fmu and Fmv protein [Synechocystis sp. PCC 6803 substr. PCC-P]
gi|383490347|ref|YP_005408023.1| Fmu and Fmv protein [Synechocystis sp. PCC 6803 substr. PCC-N]
gi|384435613|ref|YP_005650337.1| Fmu and Fmv protein [Synechocystis sp. PCC 6803]
gi|451813711|ref|YP_007450163.1| Fmu and Fmv protein [Synechocystis sp. PCC 6803]
gi|2500952|sp|P72943.1|RSMB_SYNY3 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|1652035|dbj|BAA16960.1| Fmu and Fmv protein [Synechocystis sp. PCC 6803]
gi|339272645|dbj|BAK49132.1| Fmu and Fmv protein [Synechocystis sp. PCC 6803]
gi|359270612|dbj|BAL28131.1| Fmu and Fmv protein [Synechocystis sp. PCC 6803 substr. GT-I]
gi|359273783|dbj|BAL31301.1| Fmu and Fmv protein [Synechocystis sp. PCC 6803 substr. PCC-N]
gi|359276953|dbj|BAL34470.1| Fmu and Fmv protein [Synechocystis sp. PCC 6803 substr. PCC-P]
gi|407957432|dbj|BAM50672.1| Fmu and Fmv protein [Synechocystis sp. PCC 6803]
gi|451779680|gb|AGF50649.1| Fmu and Fmv protein [Synechocystis sp. PCC 6803]
Length = 446
Score = 202 bits (515), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 147/426 (34%), Positives = 213/426 (50%), Gaps = 19/426 (4%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L D R T++V G +R +R LD LI L ++ P L +I+++G Y++ LD
Sbjct: 35 LSPPDRRFCTELVYGVVRRQRTLDCLIEQL--GDRPIGKQPPDLRRIVQLGLYQLRYLDQ 92
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A V+ V LAK G +VNG+LR+ ++ L + + +L
Sbjct: 93 VPASAAVNTGVDLAKANGLKGLSKVVNGMLRRYQRAEEQGKNILDQ-------EKISLGE 145
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
YS P W++ + + G+ E L + N +PS LR N K +R ++ L L L
Sbjct: 146 QYSFPDWLMELFEQTWGKAETESLCAYFNQNPSLDLRINPLK-TSRVEVAQSLAELNLTT 204
Query: 286 PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAA 345
L + KTG + Q EG VQD SA V +++PQP ++I D CAA
Sbjct: 205 TAMAGLPQGLRLGGKTG--AITQLPGFAEGWWTVQDASAQWVAQILNPQPEETIFDVCAA 262
Query: 346 PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTV 405
PGGKT ++A + QG +YA D + RL+ L T + + S I+ DL V
Sbjct: 263 PGGKTTHIAELMGDQGQIYAGDRHGWRLQKLAVTQQRLGLTS-IKIWEGDLTQPGVKPPV 321
Query: 406 K-CDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464
+ D+ LLD PCSGLG L + DLRW + + L LQ LL A + LVK GG LVYS
Sbjct: 322 ELVDRALLDVPCSGLGTLHRNPDLRWRQTPATIATLLPLQQALLKAIAPLVKSGGTLVYS 381
Query: 465 TCSIDPEENEERVEAFLLRHPEFSIDPADGLVP---SDFVTKHGFFFSDPIKHSLDGAFA 521
TC+++P ENE ++E FL H ++ +P + P ++ VT G P H DG F
Sbjct: 382 TCTLNPAENEAQIERFLQDHEDWRSEPFEWTSPQGQTNSVTS-GMLTILPHHHHQDGFFI 440
Query: 522 ARLVRA 527
A L +A
Sbjct: 441 ANLKKA 446
>gi|323141164|ref|ZP_08076065.1| ribosomal RNA small subunit methyltransferase B
[Phascolarctobacterium succinatutens YIT 12067]
gi|322414307|gb|EFY05125.1| ribosomal RNA small subunit methyltransferase B
[Phascolarctobacterium succinatutens YIT 12067]
Length = 453
Score = 202 bits (515), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 133/390 (34%), Positives = 205/390 (52%), Gaps = 17/390 (4%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
R L D D RL T++V GT++ LD + + + +L ILRI Y++
Sbjct: 39 LRGSRLSDLDRRLATELVYGTVKASGTLDWYLAQCV--SRPLDKVAGDILAILRISTYQL 96
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
+ + +P A V+E V+LA+ G+ VNG+LR L+ ++ + LP E D A
Sbjct: 97 LYMTRIPASAAVNEAVKLARSVSHEGSAKFVNGVLRGLLRKQEAGAFVLPDTEKQD---A 153
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
L+ Y HP W+V+RW G+ +L+ ++N+ LR N+ TR L+ L
Sbjct: 154 DYLSLQYYHPRWLVKRWLGPWGRGGTERLLAFDNTAAPVCLRVNTLV-TTRDKLLADLTE 212
Query: 281 LKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGL---CAVQDESAGLVVAVVDPQPGQ 337
+ QV H E+ +++ L L +QDES+ LV V+ PQPG
Sbjct: 213 MGAQV------HASEWSPYGIVAEHLPSLHTLLAALPQHFYIQDESSMLVAPVLAPQPGM 266
Query: 338 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR 397
++D C+APGGK ++A + +G V A DI++ +L ++ E A + SV +T+ D
Sbjct: 267 RVLDMCSAPGGKATHVAQLMQDKGEVIACDIHEHKLELIAENAARLGMKSV-KTLQNDAL 325
Query: 398 TFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKP 457
D+VL+DAPCSGLGVL +RA+ RW ++ +D++ LQ +L A+ VK
Sbjct: 326 QLRSEWLGVFDRVLVDAPCSGLGVLRRRAEARWRKQRKDLKLFPPLQLAILKNAAQYVKD 385
Query: 458 GGVLVYSTCSIDPEENEERVEAFLLRHPEF 487
GG +VYSTC+I+ EN VE FL +HPE+
Sbjct: 386 GGTMVYSTCTIEQSENHYLVEEFLTQHPEW 415
>gi|325567768|ref|ZP_08144379.1| RNA methyltransferase Sun [Enterococcus casseliflavus ATCC 12755]
gi|325158541|gb|EGC70688.1| RNA methyltransferase Sun [Enterococcus casseliflavus ATCC 12755]
Length = 452
Score = 202 bits (514), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 150/476 (31%), Positives = 251/476 (52%), Gaps = 68/476 (14%)
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVG 120
R V+ L+RI+ GGA+++LL ++ G L+D+D RL+T++V
Sbjct: 13 RFVALEALLRIEKGGAYSNLLLRELMNQGR----------------LNDKDGRLLTELVY 56
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLA 179
GTI + LD+ + K ++P + +LR+ Y+++ LD +P +A++ E V +A
Sbjct: 57 GTISRQLLLDYYLDRFI---KNARKVDPWVKTLLRLSLYQMLYLDKVPAHAIIHEAVDIA 113
Query: 180 KVALRPGAGNLVNGILRK--------LVLLKDNNSLPLPKLEGNDRAQARALATIYSHPV 231
K PG G VNG+LR L L+KD P+ +L AT S P+
Sbjct: 114 KAKGNPGTGKFVNGVLRTIQRQGVPDLALIKD----PMERL-----------ATEISLPL 158
Query: 232 WMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV-PHELS 290
W+ ++ K +G EE +L + +P+ + + +++A + +L + P ELS
Sbjct: 159 WLTKKLVKQIGIEETSELG-YALFEPNHASGRIDLQRISQAAAIERLQEEGIDARPSELS 217
Query: 291 LHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKT 350
+ + G + + L KEGL +QDES+ LV V+ ++D CAAPGGKT
Sbjct: 218 PY---GVVADKGF--MAGSSLYKEGLLTIQDESSMLVAPVLQVARDHQVLDACAAPGGKT 272
Query: 351 LYMASCLSGQ--GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVKC 407
++A+ LS V A+DI+ +++++ + A+ V +V+ T D R A + +
Sbjct: 273 THIAAFLSAAEGSKVTALDIHAHKVKLIQQNAQRLGVEAVVETRVMDARETAQTFAPEQF 332
Query: 408 DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467
D++L+DAPCSGLG++ ++ D+++++ D + L +Q E+L++A+ +K G++VYSTC+
Sbjct: 333 DRILVDAPCSGLGLMRRKPDIKYSKTEADFQRLPRIQREILESAAPTLKKSGIMVYSTCT 392
Query: 468 IDPEENEERVEAFLLRHPEFSIDP-ADG-------------LVPSDFVTKHGFFFS 509
I EEN++ V AFL HPEF P A G + P DF+T GFF S
Sbjct: 393 ILEEENQQVVAAFLADHPEFEQMPLAVGPLAAEAVQEDMLTIYPQDFMTD-GFFIS 447
>gi|347525667|ref|YP_004832415.1| 16S rRNA m(5)C 967 methyltransferase [Lactobacillus ruminis ATCC
27782]
gi|345284626|gb|AEN78479.1| 16S rRNA m(5)C 967 methyltransferase [Lactobacillus ruminis ATCC
27782]
Length = 447
Score = 202 bits (514), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 148/431 (34%), Positives = 228/431 (52%), Gaps = 45/431 (10%)
Query: 65 AVRLM-RIQFGGAFADL-LNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGT 122
AV+L+ RI+ G++++L LN+ K S LD+RD+ L+T+IV G
Sbjct: 12 AVKLLERIEKNGSYSNLALNQTIKKS-----------------QLDERDVGLLTNIVYGV 54
Query: 123 IRWR----RYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVR 177
I+ + YLD I K +EP + ++L+ Y+ + LD +P A+ +E +
Sbjct: 55 IQRKLTLEFYLDGFI-------KNGRKVEPWVYELLKTALYQQLYLDKIPKRAIFNETIE 107
Query: 178 LAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRW 237
+AKV G V GIL ++ + LP P N + A ++ S P W+V +
Sbjct: 108 IAKVNGHEGIRRFVTGILHEI----ERKGLPDP---SNVKDSAEKISIESSTPKWLVEKL 160
Query: 238 TKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFI 297
T+ LG E+ I L+ N P+ S+R N K T V L +V L L +
Sbjct: 161 TEELGFEKTISLLKSINEPPAQSIRVNLAKN-TVHQAVSALEKEGFKVSKSLVSPLG--L 217
Query: 298 RVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCL 357
RV G + + K GL VQDESA L V +D + ++D CAAPGGKT+ +A+ L
Sbjct: 218 RVSGGF--IPHSDAYKRGLVTVQDESAMLAVDSMDVKSTDVVLDGCAAPGGKTMQIAAVL 275
Query: 358 SGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKC-DKVLLDAPC 416
G VYA+DI+ ++ ++ + A+L V + + D R + + DKVL+DAPC
Sbjct: 276 DS-GRVYALDIHAHKVGLIEKNAELCGVTNYVTAKKTDARKAKEEFDEESFDKVLIDAPC 334
Query: 417 SGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEER 476
SGLG++ ++ ++++++ +D L +Q +LD + LVKPGG L YSTC+I EEN+
Sbjct: 335 SGLGLMRRKPEVKYDKHFKDSLSLHDVQVGILDQVAELVKPGGRLTYSTCTILNEENQAT 394
Query: 477 VEAFLLRHPEF 487
V+AFL RHPEF
Sbjct: 395 VDAFLKRHPEF 405
>gi|331269683|ref|YP_004396175.1| ribosomal RNA small subunit methyltransferase B [Clostridium
botulinum BKT015925]
gi|329126233|gb|AEB76178.1| ribosomal RNA small subunit methyltransferase B [Clostridium
botulinum BKT015925]
Length = 443
Score = 202 bits (514), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 132/432 (30%), Positives = 234/432 (54%), Gaps = 25/432 (5%)
Query: 101 GFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYE 160
+ ++D+D L+T+IV GTI+++ +D + L + +K S++ +L ILR Y+
Sbjct: 29 SLNNQKINDKDKGLITEIVYGTIKYKYTIDTI--LNAYLKKGTKSVDSYILNILRTTIYQ 86
Query: 161 IVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQ 219
I LD +P +A V+E V +AK G LVNG+LR N L K+ N +
Sbjct: 87 IKYLDKIPNFAAVNEAVNIAKKHKSIGESKLVNGVLR-------NYLRNLDKVYYNKNSI 139
Query: 220 ARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLN 279
L+ YS W+V+ + +E A K++ N P+ ++R N+ K D N
Sbjct: 140 IERLSFEYSCEKWLVKMFINQYNEEIAEKILKGLNERPAVTVRVNNLK----TDYDEAFN 195
Query: 280 LLKLQVPHELSLH----LDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQP 335
L+ +E S+ E I + G +++ L ++G VQDESA LV ++ +
Sbjct: 196 KLE---EYEYSIEEGYVCPEAIVINKG-KSIESNPLFEDGKITVQDESAMLVAPTMNVEQ 251
Query: 336 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHAD 395
G ++D C+APGGKT +++ ++ G V A DI++ +L ++ + AK +N+ I D
Sbjct: 252 GDLVLDLCSAPGGKTTHISEIMNNTGKVKAFDIHENKLNLVKDNAKRLGINN-IECSKLD 310
Query: 396 LRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLV 455
F + D VL+D PCSGLG++ K+ ++++ + +E ++++ +Q E++ A+ V
Sbjct: 311 ASKFNEELKEIADAVLIDVPCSGLGIIRKKPEIKYTKNMESVKDIVKIQKEIMKNAARYV 370
Query: 456 KPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPA-DGLVPSDFVTKHGFFFSDPIKH 514
K GG L+YSTC+I+ +ENE+ ++ F+ P+++++P G + + ++G P K+
Sbjct: 371 KVGGTLLYSTCTINKKENEQNIDWFIKNFPQYTVEPIFYGKMDNIIYNENGTVTILPNKY 430
Query: 515 SLDGAFAARLVR 526
+DG F A+L R
Sbjct: 431 -MDGFFIAKLKR 441
>gi|226224425|ref|YP_002758532.1| RNA-binding Sun protein [Listeria monocytogenes serotype 4b str.
CLIP 80459]
gi|386732562|ref|YP_006206058.1| 16S rRNA methyltransferase B [Listeria monocytogenes 07PF0776]
gi|406704606|ref|YP_006754960.1| tRNA and rRNA cytosine-C5-methylase, putative [Listeria
monocytogenes L312]
gi|225876887|emb|CAS05596.1| Putative RNA-binding Sun protein [Listeria monocytogenes serotype
4b str. CLIP 80459]
gi|384391320|gb|AFH80390.1| 16S rRNA methyltransferase B [Listeria monocytogenes 07PF0776]
gi|406361636|emb|CBY67909.1| tRNA and rRNA cytosine-C5-methylase, putative [Listeria
monocytogenes L312]
Length = 444
Score = 202 bits (513), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 137/431 (31%), Positives = 237/431 (54%), Gaps = 30/431 (6%)
Query: 101 GFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEP--LLLQILRIGF 158
+ + L+ D L+T++V GT + + LD+ + F + EP + +LR+
Sbjct: 32 ALKKQKLNPLDKGLLTELVYGTTQRKITLDYYLA-------PFLNKEPDNWVKNLLRMSV 84
Query: 159 YEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEG-ND 216
Y++ LD +P +A+++E +AK G VNG+LR ++ +P ++ D
Sbjct: 85 YQLTFLDKVPEHAILNEAGDIAKDLGHQGVTKFVNGVLRNVI------RKGVPSIDAIKD 138
Query: 217 RAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVM 276
Q A+ T S P W+ +RWT G E+ ++ + P S+R N + + L+
Sbjct: 139 PVQKIAVET--SLPEWLAKRWTDQYGIEKLREIGLAFLVAPHQSIRVNQTE-IPTEQLIK 195
Query: 277 QLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPG 336
+LN + V + ++E + V+ G +V + K+G C++QDES+ L + +
Sbjct: 196 ELNDQGITVTR--NEFIEEALLVEKG--SVAETKAYKDGKCSIQDESSMLAAYALQLEDN 251
Query: 337 QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADL 396
+++D CAAPGGKT ++A + G G+V+A+DI++ + +++++ AK Q+ + IRT H D
Sbjct: 252 LTVLDACAAPGGKTTHIAEKMHGTGMVHALDIHEKKTKLIDQAAKRLQLLN-IRTAHLDA 310
Query: 397 RTFADNSTVKC-DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLV 455
RT + + D++L+DAPCSG GVL ++ D+++ + +D+ +L +Q +LD S LV
Sbjct: 311 RTASTMFEPETFDRILVDAPCSGFGVLRRKPDIKYAKTEKDIHKLAEIQLAILDDVSQLV 370
Query: 456 KPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDF--VTKHGFFFSDPIK 513
K G+LVYSTC+ID EENE + AFL +HPEF+++P ++P + K F P
Sbjct: 371 KENGILVYSTCTIDKEENETVLRAFLEKHPEFTLEPV--VLPEKLAQIKKDDFIQLLPTD 428
Query: 514 HSLDGAFAARL 524
DG F + L
Sbjct: 429 IGSDGFFVSSL 439
>gi|299535921|ref|ZP_07049241.1| ribosomal RNA small subunit methyltransferase B [Lysinibacillus
fusiformis ZC1]
gi|424738860|ref|ZP_18167289.1| ribosomal RNA small subunit methyltransferase B [Lysinibacillus
fusiformis ZB2]
gi|298728673|gb|EFI69228.1| ribosomal RNA small subunit methyltransferase B [Lysinibacillus
fusiformis ZC1]
gi|422947344|gb|EKU41741.1| ribosomal RNA small subunit methyltransferase B [Lysinibacillus
fusiformis ZB2]
Length = 453
Score = 202 bits (513), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 135/427 (31%), Positives = 230/427 (53%), Gaps = 37/427 (8%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
++ +D L+T+I GT++++ LD+ + SS++ + +LRI Y+I L
Sbjct: 44 IEAKDRALLTEITYGTLQYKMTLDYYLEPFIR-----SSIDHWVRWLLRISLYQIHYLTR 98
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKL----VLLKDNNSLPLPKLEGNDRAQAR 221
+PP+A V+E V +AK G ++VNGILR + V D+ + P+ +L
Sbjct: 99 IPPHAAVNEAVEIAKRRGHRGIASMVNGILRSVLRSGVPSTDDIADPIERL--------- 149
Query: 222 ALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLL 281
++ T SHP+W+V+R+ G E A +++ NN P ++R N+ K + +
Sbjct: 150 SIET--SHPMWLVQRFVDNYGLEVATEMLHENNRPPVQTVRVNTTKATVKQAIA------ 201
Query: 282 KLQVPHELSLHLD---EFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQS 338
+L+ ++ D E + + G +A KEG+ +QDES+ + V++P PG
Sbjct: 202 ELEAEGLTAIQSDVIPECLYITNGQPARTKA--FKEGMITIQDESSMIPANVLNPSPGMR 259
Query: 339 IVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT 398
++D CAAPGGKT ++A + +G + A D++ +L +++ + ++ ++ T D R
Sbjct: 260 VLDMCAAPGGKTTHIAEIMQNEGSILATDLHPHKLDLIDHNTERLGLD-IVETAPIDGRK 318
Query: 399 FADN-STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKP 457
+ D +L+DAPCSGLGV+ ++ D+++ +R ED+E L+ +Q LLDAA+ ++K
Sbjct: 319 APEFLQAASFDAILVDAPCSGLGVMRRKPDIKYTKREEDLESLQKIQLALLDAATKVLKT 378
Query: 458 GGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTK--HGFFFSDPIKHS 515
G LVYSTC++D +ENE V+AFL HPE + L P+ K +G P
Sbjct: 379 DGKLVYSTCTVDIQENEGTVKAFLTAHPEMEAIQLESL-PTKLAEKQANGMLQVFPQDFG 437
Query: 516 LDGAFAA 522
DG F A
Sbjct: 438 SDGFFVA 444
>gi|167040389|ref|YP_001663374.1| sun protein [Thermoanaerobacter sp. X514]
gi|256752273|ref|ZP_05493136.1| sun protein [Thermoanaerobacter ethanolicus CCSD1]
gi|300914473|ref|ZP_07131789.1| sun protein [Thermoanaerobacter sp. X561]
gi|307724291|ref|YP_003904042.1| sun protein [Thermoanaerobacter sp. X513]
gi|166854629|gb|ABY93038.1| sun protein [Thermoanaerobacter sp. X514]
gi|256748841|gb|EEU61882.1| sun protein [Thermoanaerobacter ethanolicus CCSD1]
gi|300889408|gb|EFK84554.1| sun protein [Thermoanaerobacter sp. X561]
gi|307581352|gb|ADN54751.1| sun protein [Thermoanaerobacter sp. X513]
Length = 444
Score = 202 bits (513), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 130/430 (30%), Positives = 222/430 (51%), Gaps = 23/430 (5%)
Query: 103 RTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIV 162
+ ++L + D ++V G I + LD ++ + +M L +G Y+++
Sbjct: 30 KGQELKEIDRGFTKELVFGVIERKYTLDFILSFFVNKAPDLKTM-----IFLEMGLYQLL 84
Query: 163 KLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQAR 221
+D +P YA ++E V +AK L N +N +LR K+ P +R +
Sbjct: 85 YMDKVPSYAAINETVNIAKKVLGIKRANFINAVLRNYDREKERVIFP-----DKERDLKQ 139
Query: 222 ALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLL 281
L YS+P W+V R +E+A L+ N P R N+ K + DL L+
Sbjct: 140 YLKVTYSYPDWIVERLLNNYDEEKAEALLKSLNERPEICYRVNTLK-IDIEDLKRLLD-- 196
Query: 282 KLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVD 341
+ ++ +L+E + + ++N L KEG +QDE++ LV +++P+ G++++D
Sbjct: 197 SDGIAYKKGYYLEEALYI--DIKNPESHQLYKEGFIYIQDEASMLVSKILNPKEGETVID 254
Query: 342 CCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD 401
CAAPGGKT ++A + G V A D++ RL ++ E K + +V +T D TF +
Sbjct: 255 VCAAPGGKTTHIAQLMKNNGKVVAFDLHPHRLELIKENCKRLGITNV-KTEAFD-STFVN 312
Query: 402 NSTV-KCDKVLLDAPCSGLGVLSKRADLRW-NRRLEDMEELKILQDELLDAASLLVKPGG 459
+ K DKVL D PC+G+G++ K+ D++ N +++ EL Q ++LD++S VK GG
Sbjct: 313 KKYLEKADKVLADVPCTGIGIIRKKPDIKLKNYTRKEISELIETQYKILDSSSKYVKKGG 372
Query: 460 VLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDF---VTKHGFFFSDPIKHSL 516
LVYSTC+I EEN+ + FL HP+F + +PS G+ + P++H +
Sbjct: 373 FLVYSTCTIGKEENQNVIMKFLKEHPDFKLVDIKAEMPSGLNIETASLGYVQTTPLEHEI 432
Query: 517 DGAFAARLVR 526
DG F ++L R
Sbjct: 433 DGFFISKLRR 442
>gi|347549218|ref|YP_004855546.1| putative RNA-binding Sun protein [Listeria ivanovii subsp. ivanovii
PAM 55]
gi|346982289|emb|CBW86283.1| Putative RNA-binding Sun protein [Listeria ivanovii subsp. ivanovii
PAM 55]
Length = 446
Score = 202 bits (513), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 141/427 (33%), Positives = 236/427 (55%), Gaps = 39/427 (9%)
Query: 101 GFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEP--LLLQILRIGF 158
+ + L+ D L+T++V GT + + LD+ + F + EP + +LR+
Sbjct: 32 ALKKQKLNSLDKGLLTELVYGTTQRKITLDYYLA-------PFLNKEPDNWVKNLLRMSV 84
Query: 159 YEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDR 217
Y++ LD +P +A+++E +AK G VNG+LR V+ K S+ L + D
Sbjct: 85 YQLTFLDKVPEHAILNEAGDIAKDLGHQGVTKFVNGVLRN-VIRKGVPSIDLIQ----DP 139
Query: 218 AQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQ 277
A+ T S P W+ RRW + G E+ ++ + P SLRAN + + L+ +
Sbjct: 140 VVKIAVET--SLPEWLARRWAEQYGIEQLREIGMAFLVAPHQSLRANQTE-IRIEQLMKE 196
Query: 278 LNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQ 337
LN + V + +DE + V+ G +V + K+G C++QDES+ L + +
Sbjct: 197 LNDQGITVKR--NEFIDEALLVEKG--SVAETKAYKDGKCSIQDESSMLAAYALQLEDNL 252
Query: 338 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR 397
+++D CAAPGGKT ++A + G G+V+A+DI++ + +++++ AK Q+ + IRT H D R
Sbjct: 253 TVLDACAAPGGKTTHIAEKMHGTGMVHALDIHEKKTKLIDQAAKRLQLLN-IRTAHLDAR 311
Query: 398 TFADNSTVKC-DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVK 456
T + + D++L+DAPCSG GVL ++ D+++ + +D+ +L +Q +LD S LVK
Sbjct: 312 TASTMFEPETFDRILVDAPCSGFGVLRRKPDIKYAKTEKDIHKLAEIQLAILDDVSQLVK 371
Query: 457 PGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPAD--------------GLVPSDFVT 502
G+LVYSTC+ID EENE + AFL +HPEF+++P L+P+D +
Sbjct: 372 ENGILVYSTCTIDKEENETVLRAFLEKHPEFTLEPVALPEKLAHIKKDDFVQLLPTD-IG 430
Query: 503 KHGFFFS 509
GFF S
Sbjct: 431 SDGFFVS 437
>gi|442318431|ref|YP_007358452.1| ribosomal RNA small subunit methyltransferase B [Myxococcus
stipitatus DSM 14675]
gi|441486073|gb|AGC42768.1| ribosomal RNA small subunit methyltransferase B [Myxococcus
stipitatus DSM 14675]
Length = 438
Score = 202 bits (513), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 143/423 (33%), Positives = 215/423 (50%), Gaps = 22/423 (5%)
Query: 108 DDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMP 167
D RD L T++ GT R + LD+ I ++ +ME +L LRIG Y+I +P
Sbjct: 36 DPRDAGLATELTYGTTRRQLALDYAISRFA--DRKLDAMEDRVLAALRIGAYQIFHTRVP 93
Query: 168 PYAVVDENVR-LAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATI 226
A V E V+ L V L AG N ILRKL LP P L A L+
Sbjct: 94 ARAAVAETVQALKDVGLARAAG-FTNAILRKLA------ELPAPPLPSQTDV-AHYLSVR 145
Query: 227 YSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVP 286
SHP W+V RW + G+E A ++V +N P +RAN+ K VTR L+ QL L ++
Sbjct: 146 ESHPQWLVERWLRQFGRERAEAMLVADNQSPPVVIRANTAK-VTRDALLRQLQELGVEA- 203
Query: 287 HELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAP 346
+L I G + EGL VQDE+A LV ++D CAAP
Sbjct: 204 KAATLSPVGIILPPVGRVEDVYG--YSEGLWQVQDEAAQLVGVYGAIPESARVLDACAAP 261
Query: 347 GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVK 406
GGK+ ++A + V A+D++ +LR ++ A+ ++S ++ D + +
Sbjct: 262 GGKSCHLAQ----EHDVVAVDVHAHKLRKIDAEARRLGLSSRLKAYAHDAAEPFPEAWGE 317
Query: 407 CDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTC 466
+L+DAPCSGLG L + +LR+ R+ ED+ L LQ +L+ V+PGG+LVY+ C
Sbjct: 318 FHAMLVDAPCSGLGTLRRHPELRYRRKEEDIARLATLQRRILENCQESVQPGGLLVYAVC 377
Query: 467 SIDPEENEERVEAFLLRHPEFSIDPADGLVPS-DFVTKHGFFFSDPIKHSLDGAFAARLV 525
++DP+E +++VE FL HPE++ +P ++P + + P DG FAARL
Sbjct: 378 TMDPQEGQDQVEMFLRSHPEWTAEPP--VLPGLKLPLTQAYLRTLPGPEGFDGFFAARLR 435
Query: 526 RAF 528
+ +
Sbjct: 436 KLY 438
>gi|81428305|ref|YP_395305.1| rRNA methytransferase (sun protein) [Lactobacillus sakei subsp.
sakei 23K]
gi|78609947|emb|CAI54994.1| Putative rRNA methytransferase (sun protein) [Lactobacillus sakei
subsp. sakei 23K]
Length = 447
Score = 201 bits (512), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 145/435 (33%), Positives = 219/435 (50%), Gaps = 41/435 (9%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L+ +D +T +V G I+ LD+ + K M+ + Q+LR Y+ V LD
Sbjct: 37 LNPQDAGFLTQLVYGVIQHEYTLDYYLAPFIQKPK---KMDNWVRQVLRTAVYQQVYLDR 93
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVL--LKDNNSLPLPKLEGNDRAQARAL 223
+P +A+ E +AK G LV ILR+L L D N++ P L
Sbjct: 94 VPEHAIFYEATEIAKKMGHAGVSKLVTAILRQLQRSGLPDLNAIADP---------IERL 144
Query: 224 ATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRA---DLVMQLNL 280
+ YS P W+V + LG ++ L+ N + SLR N+R A +L Q N
Sbjct: 145 SVQYSVPQWLVAKLQADLGDDKLESLLATINQPANASLRVNTRVNTVDAILAELQPQFND 204
Query: 281 LKLQVPHELSLHLDEFIRVKTGLQNVIQAG------LLKEGLCAVQDESAGLVVAVVDPQ 334
L+ P +++ K GL V Q G L + G +QDES+ LV +D Q
Sbjct: 205 LQ---PSQIA---------KVGL--VAQGGHLASGALFEAGDYTIQDESSMLVAPSLDIQ 250
Query: 335 PGQSIVDCCAAPGGKTLYMASCLSGQ--GLVYAIDINKGRLRILNETAKLHQVNSVIRTI 392
PG ++D CAAPGGKT +MA+ L Q G + A+DI+ ++R++ + AK V V+
Sbjct: 251 PGDQVLDACAAPGGKTTHMATYLDAQRGGQITALDIHDHKVRLIEQNAKRLHVEDVVSAQ 310
Query: 393 HADLRTFADN-STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAA 451
D R + DK+L+DAPCSGLG++ ++ +++++R+ D+ L+ +Q +LDA
Sbjct: 311 ALDARKVGEQFGEAHFDKILVDAPCSGLGLMRRKPEIKYSRQPADLMNLQRIQLAILDAV 370
Query: 452 SLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDP 511
+ +K GG L YSTC+I PEEN++ V AF+ HPEF I+P +P F P
Sbjct: 371 APTLKVGGRLTYSTCTIVPEENQQVVAAFVANHPEFEIEPVPLELPLAQNQASPFVQIYP 430
Query: 512 IKHSLDGAFAARLVR 526
+ DG F A L R
Sbjct: 431 DDYQTDGFFIACLKR 445
>gi|154497982|ref|ZP_02036360.1| hypothetical protein BACCAP_01962 [Bacteroides capillosus ATCC
29799]
gi|150272972|gb|EDN00129.1| ribosomal RNA small subunit methyltransferase B
[Pseudoflavonifractor capillosus ATCC 29799]
Length = 447
Score = 201 bits (512), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 147/441 (33%), Positives = 228/441 (51%), Gaps = 31/441 (7%)
Query: 94 GYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQI 153
G++++TL R LD RD L T + G ++ R LD I FS+ P ++I
Sbjct: 28 GFLKKTL--REAGLDSRDAALATRLCFGVLQNRLLLDFYI-------GKFSTTRPEKMEI 78
Query: 154 -----LRIGFYEIVKLDMPPY-AVVDENVRLAKVALR-PGAGNLVNGILRKLVLLKDNNS 206
LR+G Y++ + P+ A V+E+V L K + P A +VNG+LR + N
Sbjct: 79 KVRNALRLGVYQMAFMTKIPHNAAVNESVELTKKHCKNPRAAGMVNGVLRNV----SRNI 134
Query: 207 LPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSR 266
LP +E R + L+ YSHP+W+VR +T LG EEA L+ +N P + + N+
Sbjct: 135 DRLPVIESGSREEY--LSIRYSHPLWLVREFTALLGSEEAEALLEADNGQPPITAQINT- 191
Query: 267 KGVTRADLVMQLN-LLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAG 325
RA + L L + V + L + + V +G N+ +EGL +QD +A
Sbjct: 192 ---CRATMEQTLERLAEAGVEAQPHPWLADCL-VLSGTGNLEHLTAFREGLFYIQDPAAR 247
Query: 326 LVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQV 385
L V V DP+PG ++D CAAPGGKT A + G+G + + DI+ + +++ A+
Sbjct: 248 LAVEVADPKPGMKVLDACAAPGGKTFASAIRMGGEGEIQSCDIHAHKEKLIQAGAERLGF 307
Query: 386 NSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQD 445
N I+T D + D V+ D PCSGLG++ K+ D+R+ + E +E L +Q
Sbjct: 308 N-CIKTAVMDGKKHRPAFENAFDVVIADVPCSGLGIIRKKPDIRY-KDPEPLEGLPAVQS 365
Query: 446 ELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHG 505
+LD + VKPGGVL+Y+TC++ EN + V FL R+ +F+++ P +G
Sbjct: 366 AILDNVATYVKPGGVLLYATCTLLERENGDVVRGFLDRNKDFTLEKFQLPEPLG-RADNG 424
Query: 506 FFFSDPIKHSLDGAFAARLVR 526
F P +H DG F A+L R
Sbjct: 425 MFTFWPQRHGTDGFFIAKLRR 445
>gi|310828894|ref|YP_003961251.1| hypothetical protein [Eubacterium limosum KIST612]
gi|308740628|gb|ADO38288.1| hypothetical protein ELI_3326 [Eubacterium limosum KIST612]
Length = 441
Score = 201 bits (512), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 144/437 (32%), Positives = 232/437 (53%), Gaps = 36/437 (8%)
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVG 120
R + L+R+ GA+++L KK G E Y E +DR L L +IV
Sbjct: 4 REQAVKTLLRVSREGAYSNLETKKVLG----ENHYKE----------EDRGLYL--NIVY 47
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLA 179
GT++ + YLD+L L H K + ++P +L+ILRI Y+I LD +P YA V+E+V +
Sbjct: 48 GTLQNKLYLDYL--LKKHISKDLNKLDPEVLEILRIAVYQIYFLDKIPSYAAVNESVEIT 105
Query: 180 KVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTK 239
++P A VNG+LR ++ K+ + N++ AL+ YS PVW++ ++ +
Sbjct: 106 G-RIKPKARGFVNGVLRNILRSKETDEAFDFSSFSNEK---EALSVRYSIPVWIIHKYYE 161
Query: 240 YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHEL----SLHLDE 295
G E+A K++ N P F++RAN+ K V R L +L+ + +LHL
Sbjct: 162 TFGAEKAEKIIPLLNEKPPFTIRANTLK-VDRNTLEEKLSDKGIYCEKGALDCDALHLSH 220
Query: 296 FIRVKTGLQNVIQAG-LLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMA 354
G +N +Q L G +QD+ A ++ P+ ++D CAAPGGKT +++
Sbjct: 221 L----GGFENQVQCDPLFTAGCFMIQDQGAMKAARLLGPEKTDRVLDMCAAPGGKTTHLS 276
Query: 355 SCLSGQGLVYAIDINKGRLRILNETA-KLHQVNSVIRTIHADLRTFADNSTVKCDKVLLD 413
+ +G + A DI RL+++ ETA +L N I T D F D++LLD
Sbjct: 277 QIMENEGTIIARDIFDSRLKLIEETAARLGICN--IETEKTDGCIFRPEDREAFDRILLD 334
Query: 414 APCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEEN 473
APCSGLG++ ++ ++R+ + +EL +Q +LLD A +KPGG LVY TC+++ +EN
Sbjct: 335 APCSGLGIIRRKPEIRYTITKKARKELVRIQRQLLDHAVQYLKPGGTLVYCTCTVNSDEN 394
Query: 474 EERVEAFLLRHPEFSID 490
E ++E +P I+
Sbjct: 395 ERQIERVQKDYPFMRIE 411
>gi|47096543|ref|ZP_00234133.1| sun protein [Listeria monocytogenes str. 1/2a F6854]
gi|254912380|ref|ZP_05262392.1| sun protein [Listeria monocytogenes J2818]
gi|254936707|ref|ZP_05268404.1| sun protein [Listeria monocytogenes F6900]
gi|386047475|ref|YP_005965807.1| ribosomal RNA small subunit methyltransferase B [Listeria
monocytogenes J0161]
gi|47015075|gb|EAL06018.1| sun protein [Listeria monocytogenes serotype 1/2a str. F6854]
gi|258609304|gb|EEW21912.1| sun protein [Listeria monocytogenes F6900]
gi|293590362|gb|EFF98696.1| sun protein [Listeria monocytogenes J2818]
gi|345534466|gb|AEO03907.1| ribosomal RNA small subunit methyltransferase B [Listeria
monocytogenes J0161]
gi|441471583|emb|CCQ21338.1| Ribosomal RNA small subunit methyltransferase B [Listeria
monocytogenes]
gi|441474715|emb|CCQ24469.1| Ribosomal RNA small subunit methyltransferase B [Listeria
monocytogenes N53-1]
Length = 444
Score = 201 bits (512), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 136/431 (31%), Positives = 236/431 (54%), Gaps = 30/431 (6%)
Query: 101 GFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEP--LLLQILRIGF 158
+ + L+ D L+T++V GT + + LD+ + F + EP + +LR+
Sbjct: 32 ALKKQKLNPLDKGLLTELVYGTTQRKITLDYYLA-------PFLNKEPDNWVKNLLRMSV 84
Query: 159 YEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEG-ND 216
Y++ LD +P +A+++E +AK G VNG+LR ++ +P ++ D
Sbjct: 85 YQLTYLDKVPEHAILNEAGDIAKNMGHQGVTKFVNGVLRNVI------RKGVPSIDAIKD 138
Query: 217 RAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVM 276
Q A+ T S P W+ +RW G E+ ++ + P S+R N + + L+
Sbjct: 139 PVQKIAVET--SLPEWLAKRWADQYGIEQLREIGLAFLVAPHQSIRVNQTE-IPTEQLIK 195
Query: 277 QLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPG 336
+LN + V + ++E + V+ G +V + K+G C++QDES+ L + +
Sbjct: 196 ELNDQGITVTR--NEFIEEALLVEKG--SVAETKAYKDGKCSIQDESSMLAAYALQLEDN 251
Query: 337 QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADL 396
+++D CAAPGGKT ++A + G G+V+A+DI++ + ++++E AK Q+ + IRT H D
Sbjct: 252 LTVLDACAAPGGKTTHIAEKMHGTGMVHALDIHEKKTKLIDEAAKRLQLLN-IRTAHLDA 310
Query: 397 RTFADNSTVKC-DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLV 455
RT + + D++L+DAPCSG GVL ++ D+++ + +D+ +L +Q +LD S LV
Sbjct: 311 RTASTMFEPETFDRILVDAPCSGFGVLRRKPDIKYAKTEKDIHKLAEIQLTILDDVSQLV 370
Query: 456 KPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDF--VTKHGFFFSDPIK 513
K G+LVYSTC+ID EENE + AFL +HP+F+++P ++P + K F P
Sbjct: 371 KENGILVYSTCTIDKEENETVLRAFLEKHPDFTLEPV--VLPEKLAQIKKDDFIQLLPTD 428
Query: 514 HSLDGAFAARL 524
DG F + L
Sbjct: 429 IGSDGFFVSSL 439
>gi|238924695|ref|YP_002938211.1| sun protein [Eubacterium rectale ATCC 33656]
gi|238876370|gb|ACR76077.1| sun protein [Eubacterium rectale ATCC 33656]
Length = 469
Score = 201 bits (512), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 131/423 (30%), Positives = 211/423 (49%), Gaps = 30/423 (7%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L +D +T +V GTI + LD++I + M+P + +LR+ Y+I +D
Sbjct: 73 LSKQDRAFMTRLVDGTIEYMLQLDYIIDSFS--KTKVRKMKPFIRNLLRMSVYQIKYMDA 130
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P AV +E V+LAK VNG+LR + D Q L+
Sbjct: 131 VPDSAVCNEAVKLAKRHKFAQLSGFVNGVLRNIA-------------RNIDSVQFDTLSI 177
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRAN-SRKGVTRADLVMQLNLLKLQ 284
YS P W+V R+ G+++A ++ ++ + S+R N +R ++ + +
Sbjct: 178 RYSMPQWIVDRFVAAYGEKKAEEIFKAFHNKSTISIRTNLTRCTPDELRATLEAEGVTVT 237
Query: 285 VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 344
EL+ + V +G + ++GL VQD S+ LV P+ G ++D CA
Sbjct: 238 AVDELN-----YAFVISGFDYLNGLQSFRDGLFYVQDISSMLVAQTAAPKKGDYVIDVCA 292
Query: 345 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNST 404
APGGK+ ++A L G G V+A D+ ++ ++ E H +N++ + D F +S
Sbjct: 293 APGGKSTHIAELLQGSGHVFARDLTDNKVDMIEENIDRHGLNNMSAEVW-DATVFDADSA 351
Query: 405 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464
K D ++ D PCSGLGVL ++ D+R+ ++EL +LQ ++LD VKP GVLVYS
Sbjct: 352 GKADILICDLPCSGLGVLGRKKDIRYKMTPGSVDELVVLQRQILDTVHTYVKPNGVLVYS 411
Query: 465 TCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARL 524
TC+ID ENE+ V F+ +HPEF +D + F G P +H DG F AR
Sbjct: 412 TCTIDEAENEDNVRWFIEKHPEFELDKS-------FAEGTGMKQILPGEHGSDGFFIARF 464
Query: 525 VRA 527
+++
Sbjct: 465 IKS 467
>gi|16803862|ref|NP_465347.1| hypothetical protein lmo1822 [Listeria monocytogenes EGD-e]
gi|254829183|ref|ZP_05233870.1| sun protein [Listeria monocytogenes FSL N3-165]
gi|386044131|ref|YP_005962936.1| ribosomal RNA small subunit methyltransferase B [Listeria
monocytogenes 10403S]
gi|386050799|ref|YP_005968790.1| sun protein [Listeria monocytogenes FSL R2-561]
gi|404284318|ref|YP_006685215.1| tRNA and rRNA cytosine-C5-methylase [Listeria monocytogenes
SLCC2372]
gi|404411123|ref|YP_006696711.1| tRNA and rRNA cytosine-C5-methylase [Listeria monocytogenes
SLCC5850]
gi|405758873|ref|YP_006688149.1| tRNA and rRNA cytosine-C5-methylase [Listeria monocytogenes
SLCC2479]
gi|16411276|emb|CAC99900.1| lmo1822 [Listeria monocytogenes EGD-e]
gi|258601593|gb|EEW14918.1| sun protein [Listeria monocytogenes FSL N3-165]
gi|345537365|gb|AEO06805.1| ribosomal RNA small subunit methyltransferase B [Listeria
monocytogenes 10403S]
gi|346424645|gb|AEO26170.1| sun protein [Listeria monocytogenes FSL R2-561]
gi|404230949|emb|CBY52353.1| putative tRNA and rRNA cytosine-C5-methylase [Listeria
monocytogenes SLCC5850]
gi|404233820|emb|CBY55223.1| putative tRNA and rRNA cytosine-C5-methylase [Listeria
monocytogenes SLCC2372]
gi|404236755|emb|CBY58157.1| putative tRNA and rRNA cytosine-C5-methylase [Listeria
monocytogenes SLCC2479]
Length = 444
Score = 201 bits (512), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 136/431 (31%), Positives = 236/431 (54%), Gaps = 30/431 (6%)
Query: 101 GFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEP--LLLQILRIGF 158
+ + L+ D L+T++V GT + + LD+ + F + EP + +LR+
Sbjct: 32 ALKKQKLNPLDKGLLTELVYGTTQRKITLDYYLA-------PFLNKEPDNWVKNLLRMSV 84
Query: 159 YEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEG-ND 216
Y++ LD +P +A+++E +AK G VNG+LR ++ +P ++ D
Sbjct: 85 YQLTYLDKVPEHAILNEAGDIAKNMGHQGVTKFVNGVLRNVI------RKGVPSIDAIKD 138
Query: 217 RAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVM 276
Q A+ T S P W+ +RW G E+ ++ + P S+R N + + L+
Sbjct: 139 PVQKIAVET--SLPEWLAKRWADQYGIEQLREIGLAFLVAPHQSIRVNQTE-IPTEQLIK 195
Query: 277 QLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPG 336
+LN + V + ++E + V+ G +V + K+G C++QDES+ L + +
Sbjct: 196 ELNDQGITVTR--NEFIEEALLVEKG--SVAETKAYKDGKCSIQDESSMLAAYALQLEDN 251
Query: 337 QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADL 396
+++D CAAPGGKT ++A + G G+V+A+DI++ + ++++E AK Q+ + IRT H D
Sbjct: 252 LTVLDACAAPGGKTTHIAEKMHGTGMVHALDIHEKKTKLIDEAAKRLQLLN-IRTAHLDA 310
Query: 397 RTFADNSTVKC-DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLV 455
RT + + D++L+DAPCSG GVL ++ D+++ + +D+ +L +Q +LD S LV
Sbjct: 311 RTASTMFEPETFDRILVDAPCSGFGVLRRKPDIKYAKTEKDIHKLAEIQLAILDDVSQLV 370
Query: 456 KPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDF--VTKHGFFFSDPIK 513
K G+LVYSTC+ID EENE + AFL +HP+F+++P ++P + K F P
Sbjct: 371 KENGILVYSTCTIDKEENETVLRAFLEKHPDFTLEPV--VLPEKLAQIKKDDFIQLLPTD 428
Query: 514 HSLDGAFAARL 524
DG F + L
Sbjct: 429 IGSDGFFVSSL 439
>gi|315303726|ref|ZP_07874237.1| ribosomal RNA small subunit methyltransferase B [Listeria ivanovii
FSL F6-596]
gi|313627903|gb|EFR96525.1| ribosomal RNA small subunit methyltransferase B [Listeria ivanovii
FSL F6-596]
Length = 446
Score = 201 bits (512), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 139/428 (32%), Positives = 234/428 (54%), Gaps = 24/428 (5%)
Query: 101 GFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEP--LLLQILRIGF 158
+ + L+ D L+T++V GT + + LD+ + F + EP + +LR+
Sbjct: 32 ALKKQKLNPLDKGLLTELVYGTTQRKITLDYYLA-------PFLNKEPDNWVKNLLRMSV 84
Query: 159 YEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDR 217
Y++ LD +P +A+++E +AK G VNG+LR V+ K S+ L + D
Sbjct: 85 YQLTFLDKVPEHAILNEAGDIAKDLGHQGVTKFVNGVLRN-VIRKGVPSIDLIE----DP 139
Query: 218 AQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQ 277
+ A+ T S P W+ RRW + G E+ ++ + P S+R N + + L+ +
Sbjct: 140 VKKIAVET--SLPYWLARRWAEQYGIEQLREIGMAFLVAPHQSIRVNQTE-IRTEQLIKE 196
Query: 278 LNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQ 337
LN + V + +DE + V+ G +V + K+G C++QDES+ L + +
Sbjct: 197 LNDQGITVTR--NEFIDEALIVEKG--SVAETKAYKDGKCSIQDESSMLAAYALQLEDNL 252
Query: 338 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR 397
+++D CAAPGGKT ++A + G G+V+A+DI++ + +++++ AK Q+ + IRT H D R
Sbjct: 253 TVLDACAAPGGKTTHIAEKMHGTGMVHALDIHEKKTKLIDQAAKRLQLLN-IRTAHLDAR 311
Query: 398 TFADNSTVKC-DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVK 456
T + + D++L+DAPCSG GVL ++ D+++ + +D+ +L +Q +LD S LVK
Sbjct: 312 TASTMFEPETFDRILVDAPCSGFGVLRRKPDIKYAKTEKDIHKLAEIQLAILDDVSQLVK 371
Query: 457 PGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSL 516
G+LVYSTC+ID EENE + AFL +HPEF ++P + K F P
Sbjct: 372 ENGILVYSTCTIDKEENETVLRAFLEKHPEFRLEPVALPAKLAHIKKDDFVQLLPTDIGS 431
Query: 517 DGAFAARL 524
DG F + L
Sbjct: 432 DGFFVSSL 439
>gi|167037728|ref|YP_001665306.1| sun protein [Thermoanaerobacter pseudethanolicus ATCC 33223]
gi|320116143|ref|YP_004186302.1| sun protein [Thermoanaerobacter brockii subsp. finnii Ako-1]
gi|166856562|gb|ABY94970.1| sun protein [Thermoanaerobacter pseudethanolicus ATCC 33223]
gi|319929234|gb|ADV79919.1| sun protein [Thermoanaerobacter brockii subsp. finnii Ako-1]
Length = 444
Score = 201 bits (511), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 130/430 (30%), Positives = 221/430 (51%), Gaps = 23/430 (5%)
Query: 103 RTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIV 162
+ ++L + D ++V G I + LD ++ +M L +G Y+++
Sbjct: 30 KGQELKEIDRGFTKELVFGVIERKYTLDFILSFFVKKAPDLKTM-----IFLEMGLYQLL 84
Query: 163 KLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQAR 221
+D +P YA ++E V +AK L N +N +LR K+ P +R +
Sbjct: 85 YMDKVPSYAAINETVNIAKKVLGIKRANFINAVLRNYDREKERVIFP-----DKERDLKQ 139
Query: 222 ALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLL 281
L YS+P W+V R +E+A L+ N P R N+ K + DL L+
Sbjct: 140 YLKVTYSYPDWIVERLLNNYDEEKAEALLKSLNERPEICYRVNTLK-IDIEDLKRLLD-- 196
Query: 282 KLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVD 341
+ ++ +L+E + + ++N L KEG +QDE++ LV +++P+ G++++D
Sbjct: 197 SDGIAYKKGYYLEEALYI--YIKNPESHQLYKEGFIYIQDEASMLVSKILNPKEGETVID 254
Query: 342 CCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD 401
CAAPGGKT ++A + G V A D++ RL ++ E K + +V +T D TF +
Sbjct: 255 VCAAPGGKTTHIAQLMKNNGKVVAFDLHPHRLELIKENCKRLGITNV-KTEAFD-STFVN 312
Query: 402 NSTV-KCDKVLLDAPCSGLGVLSKRADLRW-NRRLEDMEELKILQDELLDAASLLVKPGG 459
+ K DKVL D PC+G+G++ K+ D++ N +++ EL Q ++LD++S VK GG
Sbjct: 313 KKYLEKADKVLADVPCTGIGIIRKKPDIKLKNYTRKEISELIETQYKILDSSSKYVKKGG 372
Query: 460 VLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDF---VTKHGFFFSDPIKHSL 516
LVYSTC+I EEN+ + FL HP+F + +PS G+ + P++H +
Sbjct: 373 FLVYSTCTIGKEENQNVIMKFLKEHPDFKLVDIKAEMPSGLNIETASLGYVQTTPLEHEI 432
Query: 517 DGAFAARLVR 526
DG F ++L R
Sbjct: 433 DGFFISKLRR 442
>gi|218778410|ref|YP_002429728.1| sun protein [Desulfatibacillum alkenivorans AK-01]
gi|218759794|gb|ACL02260.1| sun protein [Desulfatibacillum alkenivorans AK-01]
Length = 455
Score = 201 bits (511), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 141/449 (31%), Positives = 232/449 (51%), Gaps = 28/449 (6%)
Query: 88 SGDNEMGYV-ERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSM 146
SGD + V +R L + L +D LV +V G +R R +D +I + +
Sbjct: 23 SGDQVLDVVLDRALD-KEPGLTRKDRALVMALVYGVLRNRGRIDWIIS--SFSKTKLKKI 79
Query: 147 EPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNN 205
+P +L ILR+G ++++ LD +PP VD +V +AK A VNG+LR + +
Sbjct: 80 QPEILNILRMGVFQLLFLDRVPPALAVDSSVEMAKKAAPVFVSKFVNGLLRNVE--RKGR 137
Query: 206 SLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANS 265
L LP + +A+ S+P WMV+RW K G EE ++L N ++R NS
Sbjct: 138 GLQLPDFAKD---PLKAICVAESYPEWMVKRWIKRFGAEETLELCKAGNRIAPITIRVNS 194
Query: 266 RKGVTR---ADLVM-QLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQD 321
TR AD + Q+ L+L ++L L V + EG +VQD
Sbjct: 195 L-AATRDEAADEIRDQVKNLELHDWPPMALSFS------APLVPVFELPGFSEGKFSVQD 247
Query: 322 ESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAK 381
++ + +DP+PG+ ++D CA G KT ++A + G + A D+ G+L+ L E
Sbjct: 248 AASQMTALCLDPRPGEKVLDACAGLGSKTSHIAQLMENTGEILAADLEPGKLKKLEEEMA 307
Query: 382 LHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELK 441
+V S+++T D DKVL+DAPC+GLGV+ + D +W++ L + +
Sbjct: 308 RLKV-SIVKTHALDFTRELSLEPQGFDKVLVDAPCTGLGVIRRNPDSKWSKTLNSIHKHA 366
Query: 442 ILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSD-- 499
LQ +L A+ LV+PGG+++YS CS++PEE + ++AFL + +F+++P+ +P D
Sbjct: 367 KLQGMILSRAAELVRPGGLILYSVCSMEPEETDGVIKAFLRNNEDFTLEPSP--LPKDGD 424
Query: 500 --FVTKHGFFFSDPIKHSLDGAFAARLVR 526
+ + G + P + +DG FAAR+ R
Sbjct: 425 QTMLDEQGCMRTFPHRQGMDGFFAARMRR 453
>gi|28210910|ref|NP_781854.1| 16S rRNA M(5)C 967 methyltransferase [Clostridium tetani E88]
gi|28203349|gb|AAO35791.1| 16S rRNA M(5)C 967 methyltransferase [Clostridium tetani E88]
Length = 454
Score = 201 bits (511), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 125/386 (32%), Positives = 222/386 (57%), Gaps = 18/386 (4%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L+++D +T++V GTI++R +D + L + +K S++ +L ILRIG Y++ LD
Sbjct: 47 LNEKDKAFITELVYGTIKYRHTIDTI--LNSYIKKGIKSVDKYVLNILRIGIYQLRYLDK 104
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P +A V+E V L KV + G G L+NG+LR + KD PK ++ L+
Sbjct: 105 VPSFAAVNECVELGKVKSK-GTGKLINGVLRNYIRNKD------PKYY-DESNLVEKLSF 156
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
YS+P WM+ + K G+E+ +++ NS PS ++R N+ ++D N L+
Sbjct: 157 EYSYPKWMIDLFLKQYGREKIEEILKGLNSIPSITVRVNN----IKSDYESVWNSLEDNN 212
Query: 286 PH-ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 344
+ E L E IR+ G + + + L KEGL VQDESA LV +D + +++D C+
Sbjct: 213 YNIEEGLVCPEAIRIIKG-RAIEKNPLFKEGLITVQDESAMLVAGAMDLEDNMNVMDLCS 271
Query: 345 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNST 404
APGGKT +++ ++ G V A DI++ +L ++ + + V + I I D + +
Sbjct: 272 APGGKTTHISEIMNNTGKVLAFDIHENKLDLIKQNKERLGVKN-IDLILGDGTLYNKKYS 330
Query: 405 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464
+++L+DAPCSGLG++ K+ ++++ + +D++ + +Q ++L+ + +K G+L+YS
Sbjct: 331 EFANRILIDAPCSGLGIIRKKPEIKYTKSAKDLKSIVHIQRKILENGAKYLKKNGILLYS 390
Query: 465 TCSIDPEENEERVEAFLLRHPEFSID 490
TC+++ +EN E V+ FL P F I+
Sbjct: 391 TCTLNKKENIENVKWFLKEFPNFKIE 416
>gi|345017809|ref|YP_004820162.1| sun protein [Thermoanaerobacter wiegelii Rt8.B1]
gi|344033152|gb|AEM78878.1| sun protein [Thermoanaerobacter wiegelii Rt8.B1]
Length = 444
Score = 201 bits (511), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 130/430 (30%), Positives = 220/430 (51%), Gaps = 23/430 (5%)
Query: 103 RTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIV 162
R+++L + D ++V G I + LD ++ +M L +G Y+++
Sbjct: 30 RSQELKEIDRGFTKELVFGVIERKYTLDFILSFFVKKAPDLKTM-----IFLEMGLYQLL 84
Query: 163 KLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQAR 221
+D +P YA ++E V +AK L N +N +LR K+ P +R +
Sbjct: 85 YMDKVPSYAAINETVNIAKKVLGIKRANFINAVLRNYEREKEKVIFP-----DKERDLKQ 139
Query: 222 ALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLL 281
L YS+P W+V R +E+A L+ N P R N+ K + DL L+
Sbjct: 140 YLKVTYSYPDWIVERLLNNYDEEKAEALLKSLNERPEICYRVNTLK-IDIEDLKRLLD-- 196
Query: 282 KLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVD 341
+ ++ +L+E + + ++N + L KEGL +QDE++ LV ++P+ G +++D
Sbjct: 197 SDGIVYKKGYYLEEALYI--DIKNPERHQLYKEGLIYIQDEASMLVSKTLNPKEGDTVLD 254
Query: 342 CCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD 401
CAAPGGKT ++A + G V A D++ RL ++ E K + +V + TF +
Sbjct: 255 VCAAPGGKTTHIAQLMKNSGEVIAFDLHPHRLELIKENCKRLGITNVKTEVFDS--TFVN 312
Query: 402 NSTV-KCDKVLLDAPCSGLGVLSKRADLRW-NRRLEDMEELKILQDELLDAASLLVKPGG 459
+ K DKVL D PC+G+G++ K+ D++ N +++ EL Q ++LD++S VK GG
Sbjct: 313 EKYLEKADKVLADVPCTGIGIIRKKPDIKLKNYTRKEISELIEAQYKILDSSSKYVKKGG 372
Query: 460 VLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKH---GFFFSDPIKHSL 516
LVYSTC+I EEN+ + FL HP+F + +PS + G+ P++H +
Sbjct: 373 FLVYSTCTIGKEENQNVIMKFLKEHPDFKLVDIKAEMPSGLSIETDSLGYVQITPLEHEI 432
Query: 517 DGAFAARLVR 526
DG F ++L R
Sbjct: 433 DGFFISKLKR 442
>gi|350265887|ref|YP_004877194.1| ribosomal RNA small subunit methyltransferase B [Bacillus subtilis
subsp. spizizenii TU-B-10]
gi|349598774|gb|AEP86562.1| ribosomal RNA small subunit methyltransferase B [Bacillus subtilis
subsp. spizizenii TU-B-10]
Length = 447
Score = 201 bits (510), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 120/391 (30%), Positives = 221/391 (56%), Gaps = 18/391 (4%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
++ +L D+D L+T++V GT++ + LD+++ + + ++P ++Q+LR+ Y++
Sbjct: 32 IKSNELSDQDRGLLTELVYGTLQNKIALDYMLKPFINKPQ---KVKPWVIQLLRLSLYQM 88
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
L+ +P A + E V +AK+ G + VNG+LR + +P + +
Sbjct: 89 EYLEKIPDRAAIHEAVEIAKIRGHKGIASFVNGVLRSI------QREGVPTFDAIEDP-V 141
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
R LAT SHP W+V+ WT G + A K+ + P +LR N K RADL+ Q+
Sbjct: 142 RRLATETSHPEWLVKEWTDAYGFDAAEKICRIHLIPPRQTLRVNQMKA-DRADLLDQMAA 200
Query: 281 LKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIV 340
++V E ++ +++ G ++ + G ++QDES+ LV +DP+PG++++
Sbjct: 201 EGIEV--ENGDLAEDAVKLLKG--SIAGTHFFQTGEVSIQDESSMLVARALDPKPGETVL 256
Query: 341 DCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 400
D CAAPGGK+ ++ + +G V ++D++K +++++ E A + ++I D R
Sbjct: 257 DACAAPGGKSAHIGELMENKGSVTSLDLHKHKVKLIKEAADRLGL-TIIDAKTMDARKAG 315
Query: 401 DN-STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGG 459
+ + D++L+DAPCSG GV+ ++ D+++ ++ +D L +Q +L + LVK GG
Sbjct: 316 ETFENGQFDRILVDAPCSGFGVIRRKPDMKYTKKPDDSARLAEIQLSILREIAPLVKKGG 375
Query: 460 VLVYSTCSIDPEENEERVEAFLLRHPEFSID 490
LVYSTC++D EN+E + AF+ HP+F D
Sbjct: 376 TLVYSTCTMDRTENDEVIHAFIQEHPDFEPD 406
>gi|422809903|ref|ZP_16858314.1| Ribosomal RNA small subunit methyltransferase B [Listeria
monocytogenes FSL J1-208]
gi|378751567|gb|EHY62155.1| Ribosomal RNA small subunit methyltransferase B [Listeria
monocytogenes FSL J1-208]
Length = 444
Score = 201 bits (510), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 136/431 (31%), Positives = 237/431 (54%), Gaps = 30/431 (6%)
Query: 101 GFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEP--LLLQILRIGF 158
+ + L+ D L+T++V GT + + LD+ + F + EP + +LR+
Sbjct: 32 ALKKQKLNPLDKGLLTELVYGTTQRKITLDYYLA-------PFLNKEPDNWVKNLLRMSV 84
Query: 159 YEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEG-ND 216
Y++ LD +P +A+++E +AK G VNG+LR ++ +P ++ D
Sbjct: 85 YQLTFLDKVPEHAILNEAGDIAKDLGHQGVTKFVNGVLRNVI------RKGVPSIDAIKD 138
Query: 217 RAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVM 276
Q A+ T S P W+ +RW + G E+ ++ + P S+R N + + L+
Sbjct: 139 PVQKIAVET--SLPEWLAKRWAEQYGIEKLREIGLAFLVAPHQSIRVNQTE-IPTEQLIK 195
Query: 277 QLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPG 336
+LN + V + ++E + V+ G +V + K+G C++QDES+ L + +
Sbjct: 196 ELNDQGITVTR--NEFIEEALLVEKG--SVAETKAYKDGKCSIQDESSMLAAYALQLEDN 251
Query: 337 QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADL 396
+++D CAAPGGKT ++A + G G+V+A+DI++ + +++++ AK Q+ + IRT H D
Sbjct: 252 LTVLDACAAPGGKTTHIAEKMHGTGMVHALDIHEKKTKLIDQAAKRLQLLN-IRTAHLDA 310
Query: 397 RTFADNSTVKC-DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLV 455
RT + + D++L+DAPCSG GVL ++ D+++ + +D+ +L +Q +LD S LV
Sbjct: 311 RTASTMFEPETFDRILVDAPCSGFGVLRRKPDIKYAKTEKDIHKLAEIQLAILDDVSQLV 370
Query: 456 KPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDF--VTKHGFFFSDPIK 513
K G+LVYSTC+ID EENE + AFL +HPEF+++P ++P + K F P
Sbjct: 371 KENGILVYSTCTIDKEENETVLRAFLEKHPEFALEPV--VLPEKLAQIKKDDFIQLLPTD 428
Query: 514 HSLDGAFAARL 524
DG F + L
Sbjct: 429 IGSDGFFVSSL 439
>gi|189426656|ref|YP_001953833.1| sun protein [Geobacter lovleyi SZ]
gi|189422915|gb|ACD97313.1| sun protein [Geobacter lovleyi SZ]
Length = 464
Score = 200 bits (509), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 129/365 (35%), Positives = 197/365 (53%), Gaps = 17/365 (4%)
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P +A V V L L P A L+NG+LR + +++ +LP P R A LA
Sbjct: 107 VPSHAAVHATVELTNEIL-PRAKGLINGVLRSYLRRQESLTLPDPA-----RQPAAWLAA 160
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
YS P W+ +W + Q EA L + P +LR N+ + ++R+ L+ + + +L
Sbjct: 161 AYSLPGWLAEQWLQQFSQNEAAGLAAASTEIPPLTLRVNTLR-ISRSALLERFHAAELAA 219
Query: 286 PHELSLHLDEFIRVKTGLQNVIQAGL--LKEGLCAVQDESAGLVVAVVDPQPGQSIVDCC 343
E E I++ LQ GL EGL VQDE++ LV ++ PQ G+ I+D C
Sbjct: 220 --EPCRFAPEGIQL---LQRCQITGLPGFDEGLFMVQDEASQLVAHLLAPQTGEQILDMC 274
Query: 344 AAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS 403
AAPGGK ++A ++ +G + A D+N R+R + E+A+ + S I+ + AD T
Sbjct: 275 AAPGGKATHLAQLMNDRGCITATDLNARRIRRICESAQRLGLTS-IQAVAADALTSDYLE 333
Query: 404 TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463
++ D++LLDAPCSGLGV+ + + +W ++ Q L+DAA+ +KP GVLVY
Sbjct: 334 GLQFDRILLDAPCSGLGVIRRNPEAKWRLTPAEISRCAARQHLLIDAAAARLKPAGVLVY 393
Query: 464 STCSIDPEENEERVEAFLLRHPEFSIDPADGLVP--SDFVTKHGFFFSDPIKHSLDGAFA 521
+TCS EE+E ++ FL RHPEF ++ P +D G+ + P +H DG FA
Sbjct: 394 ATCSTAMEEDETVIKDFLSRHPEFVVENGAQFFPAWTDLFDCSGYLRAWPHRHGTDGFFA 453
Query: 522 ARLVR 526
ARL R
Sbjct: 454 ARLRR 458
>gi|374708693|ref|ZP_09713127.1| 16S rRNA methyltransferase B [Sporolactobacillus inulinus CASD]
Length = 451
Score = 200 bits (508), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 131/389 (33%), Positives = 214/389 (55%), Gaps = 20/389 (5%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L + D RLVT +V G ++ + L + + ++ + +LL + Y+ V LD
Sbjct: 37 LRENDKRLVTTLVYGVLQQKSVLRFYLSSFVNRKRKLDAWVEMLL---LLSIYQKVFLDR 93
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P +A+V+E+V +AK G VNGILR+L+ +P L Q R L+
Sbjct: 94 IPDHAIVNESVTIAKKRGHRGISGFVNGILRRLM------REGVPSLSSITPEQKR-LSI 146
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQ- 284
YSHP W+++ W + + A+K +N P+ LR N R ++R +L+ L +Q
Sbjct: 147 QYSHPEWLLKLWREQWDLDTAVKTAQADNQPPNLCLRVN-RLKLSRQELMEHLAQEGIQT 205
Query: 285 VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 344
VP LSL + I V +G N + ++G VQDES+ LV V + I+D CA
Sbjct: 206 VPGPLSL---DCIVVTSG--NAVATAAFQKGWFTVQDESSMLVADCVGAEDNMLILDACA 260
Query: 345 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-S 403
PGGKT ++ ++ +G + A+D++ + +++++ A + + I T D R D
Sbjct: 261 GPGGKTTHLGERMNNKGKIIALDLHPHKTKLIDQAANRLGLEN-IETRAMDARAARDTFG 319
Query: 404 TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463
D+VLLD PCSGLGV+ ++ +++W++ E++ L +Q +L+ A+ +VKPGG L+Y
Sbjct: 320 EAAFDRVLLDVPCSGLGVIRRKPEIKWSKTAEEISGLIPIQRAILEEAAPMVKPGGRLIY 379
Query: 464 STCSIDPEENEERVEAFLLRHPEFSIDPA 492
STC+I EENE+++ AFL RHPE+ D A
Sbjct: 380 STCTIQKEENEQQILAFLRRHPEYRTDAA 408
>gi|46908054|ref|YP_014443.1| sun protein [Listeria monocytogenes serotype 4b str. F2365]
gi|47093059|ref|ZP_00230837.1| sun protein [Listeria monocytogenes str. 4b H7858]
gi|254826136|ref|ZP_05231137.1| sun protein [Listeria monocytogenes FSL J1-194]
gi|254852729|ref|ZP_05242077.1| sun protein [Listeria monocytogenes FSL R2-503]
gi|254933294|ref|ZP_05266653.1| sun protein [Listeria monocytogenes HPB2262]
gi|300763865|ref|ZP_07073862.1| sun protein [Listeria monocytogenes FSL N1-017]
gi|404281435|ref|YP_006682333.1| tRNA and rRNA cytosine-C5-methylase [Listeria monocytogenes
SLCC2755]
gi|404287251|ref|YP_006693837.1| tRNA and rRNA cytosine-C5-methylase [Listeria monocytogenes
serotype 7 str. SLCC2482]
gi|405750174|ref|YP_006673640.1| tRNA and rRNA cytosine-C5-methylase [Listeria monocytogenes ATCC
19117]
gi|405753049|ref|YP_006676514.1| tRNA and rRNA cytosine-C5-methylase [Listeria monocytogenes
SLCC2378]
gi|405755983|ref|YP_006679447.1| tRNA and rRNA cytosine-C5-methylase [Listeria monocytogenes
SLCC2540]
gi|424714697|ref|YP_007015412.1| Ribosomal RNA small subunit methyltransferase B [Listeria
monocytogenes serotype 4b str. LL195]
gi|424823583|ref|ZP_18248596.1| Ribosomal RNA small subunit methyltransferase B [Listeria
monocytogenes str. Scott A]
gi|46881324|gb|AAT04620.1| sun protein [Listeria monocytogenes serotype 4b str. F2365]
gi|47018560|gb|EAL09315.1| sun protein [Listeria monocytogenes serotype 4b str. H7858]
gi|258606052|gb|EEW18660.1| sun protein [Listeria monocytogenes FSL R2-503]
gi|293584854|gb|EFF96886.1| sun protein [Listeria monocytogenes HPB2262]
gi|293595376|gb|EFG03137.1| sun protein [Listeria monocytogenes FSL J1-194]
gi|300515601|gb|EFK42651.1| sun protein [Listeria monocytogenes FSL N1-017]
gi|332312263|gb|EGJ25358.1| Ribosomal RNA small subunit methyltransferase B [Listeria
monocytogenes str. Scott A]
gi|404219374|emb|CBY70738.1| tRNA and rRNA cytosine-C5-methylase, putative [Listeria
monocytogenes ATCC 19117]
gi|404222249|emb|CBY73612.1| putative tRNA and rRNA cytosine-C5-methylase [Listeria
monocytogenes SLCC2378]
gi|404225183|emb|CBY76545.1| putative tRNA and rRNA cytosine-C5-methylase [Listeria
monocytogenes SLCC2540]
gi|404228070|emb|CBY49475.1| putative tRNA and rRNA cytosine-C5-methylase [Listeria
monocytogenes SLCC2755]
gi|404246180|emb|CBY04405.1| tRNA and rRNA cytosine-C5-methylase, putative [Listeria
monocytogenes serotype 7 str. SLCC2482]
gi|424013881|emb|CCO64421.1| Ribosomal RNA small subunit methyltransferase B [Listeria
monocytogenes serotype 4b str. LL195]
Length = 444
Score = 200 bits (508), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 136/431 (31%), Positives = 236/431 (54%), Gaps = 30/431 (6%)
Query: 101 GFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEP--LLLQILRIGF 158
+ + L+ D L+T++V GT + + LD+ + F + EP + +LR+
Sbjct: 32 ALKKQKLNPLDKGLLTELVYGTTQRKITLDYYLA-------PFLNKEPDNWVKNLLRMSV 84
Query: 159 YEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEG-ND 216
Y++ LD +P +A+++E +AK G VNG+LR ++ +P ++ D
Sbjct: 85 YQLTFLDKVPEHAILNEAGDIAKDLGHQGVTKFVNGVLRNVI------RKGVPSIDAIKD 138
Query: 217 RAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVM 276
Q A+ T S P W+ +RW G E+ ++ + P S+R N + + L+
Sbjct: 139 PVQKIAVET--SLPEWLAKRWADQYGIEKLREIGLAFLVAPHQSIRVNQTE-IPTEQLIK 195
Query: 277 QLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPG 336
+LN + V + ++E + V+ G +V + K+G C++QDES+ L + +
Sbjct: 196 ELNDQGITVTR--NEFIEEALLVEKG--SVAETKAYKDGKCSIQDESSMLAAYALQLEDN 251
Query: 337 QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADL 396
+++D CAAPGGKT ++A + G G+V+A+DI++ + +++++ AK Q+ + IRT H D
Sbjct: 252 LTVLDACAAPGGKTTHIAEKMHGTGMVHALDIHEKKTKLIDQAAKRLQLLN-IRTAHLDA 310
Query: 397 RTFADNSTVKC-DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLV 455
RT + + D++L+DAPCSG GVL ++ D+++ + +D+ +L +Q +LD S LV
Sbjct: 311 RTASTMFEPETFDRILVDAPCSGFGVLRRKPDIKYAKTEKDIHKLAEIQLAILDDVSQLV 370
Query: 456 KPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDF--VTKHGFFFSDPIK 513
K G+LVYSTC+ID EENE + AFL +HPEF+++P ++P + K F P
Sbjct: 371 KENGILVYSTCTIDKEENETVLRAFLEKHPEFTLEPV--VLPEKLAQIKKDDFIQLLPTD 428
Query: 514 HSLDGAFAARL 524
DG F + L
Sbjct: 429 IGSDGFFVSSL 439
>gi|290893049|ref|ZP_06556038.1| sun protein [Listeria monocytogenes FSL J2-071]
gi|404408266|ref|YP_006690981.1| tRNA and rRNA cytosine-C5-methylase [Listeria monocytogenes
SLCC2376]
gi|422410069|ref|ZP_16487030.1| ribosomal RNA small subunit methyltransferase B [Listeria
monocytogenes FSL F2-208]
gi|290557409|gb|EFD90934.1| sun protein [Listeria monocytogenes FSL J2-071]
gi|313608142|gb|EFR84195.1| ribosomal RNA small subunit methyltransferase B [Listeria
monocytogenes FSL F2-208]
gi|404242415|emb|CBY63815.1| putative tRNA and rRNA cytosine-C5-methylase [Listeria
monocytogenes SLCC2376]
Length = 444
Score = 200 bits (508), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 136/431 (31%), Positives = 236/431 (54%), Gaps = 30/431 (6%)
Query: 101 GFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEP--LLLQILRIGF 158
+ + L+ D L+T++V GT + + LD+ + F + EP + +LR+
Sbjct: 32 ALKKQKLNPLDKGLLTELVYGTTQRKITLDYYLA-------PFLNKEPDNWVKNLLRMSV 84
Query: 159 YEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEG-ND 216
Y++ LD +P +A+++E +AK G VNG+LR ++ +P ++ D
Sbjct: 85 YQLTFLDKVPEHAILNEAGDIAKDLGHQGVTKFVNGVLRNVI------RKGVPSIDAIKD 138
Query: 217 RAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVM 276
Q A+ T S P W+ +RW G E+ ++ + P S+R N + + L+
Sbjct: 139 PVQKIAVET--SLPEWLAKRWADQYGIEKLREIGLAFLVAPHQSIRVNQTE-IPTEQLIK 195
Query: 277 QLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPG 336
+LN + V + ++E + V+ G +V + K+G C++QDES+ L + +
Sbjct: 196 ELNDQGITVTR--NEFIEEALLVEKG--SVAETKAYKDGKCSIQDESSMLAAYALQLEDN 251
Query: 337 QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADL 396
+++D CAAPGGKT ++A + G G+V+A+DI++ + +++++ AK Q+ + IRT H D
Sbjct: 252 LTVLDACAAPGGKTTHIAEKMHGTGMVHALDIHEKKTKLIDQAAKRLQLLN-IRTAHLDA 310
Query: 397 RTFADNSTVKC-DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLV 455
RT + + D++L+DAPCSG GVL ++ D+++ + +D+ +L +Q +LD S LV
Sbjct: 311 RTASTMFEPETFDRILVDAPCSGFGVLRRKPDIKYAKTEKDIHKLAEIQLAILDDVSQLV 370
Query: 456 KPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDF--VTKHGFFFSDPIK 513
K G+LVYSTC+ID EENE + AFL +HPEF+++P ++P + K F P
Sbjct: 371 KENGILVYSTCTIDKEENETVLRAFLEKHPEFALEPV--VLPEKLAQIKKDDFIQLLPTD 428
Query: 514 HSLDGAFAARL 524
DG F + L
Sbjct: 429 IGSDGFFVSSL 439
>gi|387927084|ref|ZP_10129763.1| 16S rRNA methyltransferase B [Bacillus methanolicus PB1]
gi|387589228|gb|EIJ81548.1| 16S rRNA methyltransferase B [Bacillus methanolicus PB1]
Length = 446
Score = 200 bits (508), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 132/388 (34%), Positives = 220/388 (56%), Gaps = 24/388 (6%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEP--LLLQILRIGFYEIVKL 164
+D +D+ L+T++ GT++ + LD+ + K F +P +L +LR+ Y++V L
Sbjct: 38 IDQKDVGLLTELTYGTLQRQMTLDYFL-------KPFIKKKPDRWVLHLLRLTLYQMVYL 90
Query: 165 D-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARAL 223
D +P A + E V +AK G ++VNG+LR + LP LE N + L
Sbjct: 91 DKIPDRASIYEAVEIAKKRGHKGIASMVNGVLRSI------QREGLPSLE-NIKDPIERL 143
Query: 224 ATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKL 283
A SHP W+V+RWT G E+ K+ N + P + R N K ++R + + L
Sbjct: 144 AVETSHPAWLVKRWTDQFGFEKTKKMCETNLTAPLQTARVNVTK-ISRDECLQLLENEGF 202
Query: 284 QVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCC 343
V E S + E IR G N+ + K GL +QDES+ LV ++ + +++D C
Sbjct: 203 NV--EASPIIPEAIRCLKG--NLAASNAFKNGLITIQDESSMLVAYALNIEENNTVLDAC 258
Query: 344 AAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS 403
AAPGGK+ ++A L+ G V ++D++ +++++ A+ +N+ I D R ++
Sbjct: 259 AAPGGKSTHIAERLNKTGKVISLDLHDHKVKLIGIAAERLGLNN-IEAKALDSRFVPEHF 317
Query: 404 TVKC-DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLV 462
+ D++LLDAPCSGLGV+ ++ D+++ + ED+ +LK +Q +LL++ + L+K GG+LV
Sbjct: 318 AAESFDRILLDAPCSGLGVMRRKPDIKYTKMEEDIYKLKQVQQDLLNSVAPLLKKGGILV 377
Query: 463 YSTCSIDPEENEERVEAFLLRHPEFSID 490
YSTC+I+ EEN+E VE+FL R+ F D
Sbjct: 378 YSTCTIEKEENQEVVESFLNRNDLFEGD 405
>gi|210622413|ref|ZP_03293145.1| hypothetical protein CLOHIR_01093 [Clostridium hiranonis DSM 13275]
gi|210154229|gb|EEA85235.1| hypothetical protein CLOHIR_01093 [Clostridium hiranonis DSM 13275]
Length = 441
Score = 199 bits (507), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 136/426 (31%), Positives = 223/426 (52%), Gaps = 16/426 (3%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
F+ + + D+D L T++V G I R+YLD +I L + M + ILR+G Y+I
Sbjct: 29 FKNEKISDKDKGLATELVYGVIENRKYLDFIINKLSKIK--VKKMSSFVKIILRMGTYQI 86
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
+ LD + +A V+E V+LA G VN ILR + + ++ +E
Sbjct: 87 LFLDKIEDHAAVNETVKLASKYDGKSKG-FVNAILRNEI--RQKRTIKYIDIED----PI 139
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
R LA YS+ W+V W K G E A +L+ N P +R N+ K + R L+ +
Sbjct: 140 RRLAVKYSYQQWIVEDWVKNFGIEFAEELLEALNERPDLYVRTNTLK-IDRNSLLKEFE- 197
Query: 281 LKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIV 340
K + ++ +E I V+ + + + L KEGL VQD S+ LV VV P+ G ++
Sbjct: 198 -KEGIKASKAMLPEEAIMVEN-FKGIESSRLYKEGLFTVQDISSMLVAKVVAPKEGDMVL 255
Query: 341 DCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 400
D C+APGGK+ +MA + G + + D+ + +++++ AK + + I D
Sbjct: 256 DMCSAPGGKSTHMAELMKNTGKIVSRDVFEHKIKVIKAAAKRLGITN-IEAEEFDAANLD 314
Query: 401 DNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGV 460
+NS K D VL D PCSGLG++ ++ ++++ + E++ +L +Q ++L+ AS VK G
Sbjct: 315 ENSIEKFDCVLTDVPCSGLGIIRRKPEIKYKAK-EELVDLPKIQSKILENASKYVKINGT 373
Query: 461 LVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAF 520
LVYSTC++ EN E VE FL +P + + P +G+ + G+ P H +DG F
Sbjct: 374 LVYSTCTVQDCENIEVVEKFLKENPNYELVPIEGINVDPEEQEKGYIKIYPNVHGMDGFF 433
Query: 521 AARLVR 526
A++ R
Sbjct: 434 IAKMKR 439
>gi|403234848|ref|ZP_10913434.1| 16S rRNA methyltransferase B [Bacillus sp. 10403023]
Length = 447
Score = 199 bits (507), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 150/471 (31%), Positives = 248/471 (52%), Gaps = 41/471 (8%)
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVG 120
R+V+ L++I+ A++++L N+M + ++ +D+ L+T+IV
Sbjct: 7 RSVALEILLQIEKNQAYSNILL--------NQM--------IKKHEVKGKDVGLLTEIVY 50
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLA 179
GTI+ R LD + + K +E + +LR+ Y++V LD +P A+ E V +A
Sbjct: 51 GTIQQRDTLDFYLTPFLKNTK---KLELWVKVLLRLSLYQMVYLDRVPERAIFFEAVEIA 107
Query: 180 KVALRPGAGNLVNGILRKLVLLKDNNSLP-LPKLEGNDRAQARALATIYSHPVWMVRRWT 238
K G +LVNG+LR + N LP L +++ D + A+ T SHP W+V RW
Sbjct: 108 KKRGHKGTASLVNGVLRSI----QRNGLPSLEQIK--DEVERIAIET--SHPNWLVTRWV 159
Query: 239 KYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHEL-SLHLDEFI 297
K +G EE K+ N + P + R N K TR +L+ LN + V E+ S+ +D
Sbjct: 160 KQIGIEETRKMCEVNCTPPEQTARVNGMK-TTREELIHMLN--EDGVETEVGSVSIDAIK 216
Query: 298 RVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCL 357
++ L N KEG +QDES+ LV + + ++D CAAPGGKT ++A L
Sbjct: 217 AIRGNLAN---TKAFKEGYFTIQDESSMLVARALGVEKDDYVLDSCAAPGGKTTHIAQIL 273
Query: 358 SGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKC-DKVLLDAPC 416
G V ++D++K ++++++E + +V T D R + V+ DK+L+DAPC
Sbjct: 274 QNTGKVISLDLHKHKIKLIDEAVTRLGLENV-ETKAFDSRKAGEIFEVQSFDKILVDAPC 332
Query: 417 SGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEER 476
SG GV+ ++ D+++++ D L +Q ++L S L+K G+LVYSTC+ID EENE
Sbjct: 333 SGFGVIRRKPDIKYSKSALDNSSLAKIQLDILTEVSTLLKKDGILVYSTCTIDYEENEGV 392
Query: 477 VEAFLLRHPEFSIDPA-DGLVPSDF--VTKHGFFFSDPIKHSLDGAFAARL 524
++ FL ++ +F +D + +P K+G P DG + ARL
Sbjct: 393 IKTFLEQNKDFILDETIENYLPEIVKPYIKNGQLQLYPHYFGTDGFYIARL 443
>gi|386758297|ref|YP_006231513.1| protein RsmB [Bacillus sp. JS]
gi|384931579|gb|AFI28257.1| RsmB [Bacillus sp. JS]
Length = 447
Score = 199 bits (506), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 119/391 (30%), Positives = 220/391 (56%), Gaps = 18/391 (4%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
++ +L D+D L+T++V GT++ + LD+++ + + ++P ++Q+LR+ Y++
Sbjct: 32 IKSNELSDQDRGLLTELVYGTLQNKIALDYMLKPFINKPQ---KVKPWVIQLLRLSLYQM 88
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
L+ +P A + E V +AK+ G + VNG+LR + +P + +
Sbjct: 89 EYLEKIPDRAAIHEAVEIAKIRGHKGIASFVNGVLRSI------QREGVPSFDAIEDP-V 141
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
R LAT SHP W+V+ W G + A K+ + P +LR N K RA+L+ Q+
Sbjct: 142 RRLATETSHPEWLVKEWADAYGFDAAEKICRIHLIPPKQTLRVNQMKA-DRAELLDQMAA 200
Query: 281 LKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIV 340
++V E ++ +++ G ++ + G ++QDES+ LV +DP+P ++++
Sbjct: 201 EGIEV--EKGDLAEDAVKLLKG--SIAGTHFFQNGEVSIQDESSMLVARALDPKPDETVL 256
Query: 341 DCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 400
D CAAPGGK+ ++A + +G V ++D++K +++++ E A + ++I D R
Sbjct: 257 DACAAPGGKSAHIAELMKNKGSVTSLDLHKHKVKLIKEAADRLGL-TIIHAETMDARKAG 315
Query: 401 DN-STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGG 459
+ K D++L+DAPCSG GV+ ++ D+++ ++ +D L +Q +L + LVK GG
Sbjct: 316 ETFENEKFDRILVDAPCSGFGVIRRKPDMKYTKKPDDSARLAEIQLSILREIAPLVKKGG 375
Query: 460 VLVYSTCSIDPEENEERVEAFLLRHPEFSID 490
LVYSTC++D EN+E + AF+ HP+F D
Sbjct: 376 TLVYSTCTMDRTENDEVIHAFIQEHPDFEPD 406
>gi|255522012|ref|ZP_05389249.1| sun protein [Listeria monocytogenes FSL J1-175]
Length = 444
Score = 199 bits (506), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 136/431 (31%), Positives = 236/431 (54%), Gaps = 30/431 (6%)
Query: 101 GFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEP--LLLQILRIGF 158
+ + L+ D L+T++V GT + + LD+ + F + EP + +LR+
Sbjct: 32 ALKKQKLNPLDKGLLTELVYGTTQRKITLDYYLA-------PFLNKEPDNWVKNLLRMSV 84
Query: 159 YEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEG-ND 216
Y++ LD +P +A+++E +AK G VNG+LR ++ +P ++ D
Sbjct: 85 YQLTFLDKVPEHAILNEAGDIAKDLGHQGVTKFVNGVLRNVI------RKGVPSIDAIKD 138
Query: 217 RAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVM 276
Q A+ T S P W+ +RW G E+ ++ + P S+R N + + L+
Sbjct: 139 PVQKIAVET--SLPEWLAKRWADQYGIEKLREIGLAFLVAPHQSIRVNQTE-IPTEQLIK 195
Query: 277 QLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPG 336
+LN + V + ++E + V+ G +V + K+G C++QDES+ L + +
Sbjct: 196 ELNDQGITVTR--NEFIEEALLVEKG--SVAETKAYKDGKCSIQDESSMLAAYALQLEDN 251
Query: 337 QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADL 396
+++D CAAPGGKT ++A + G G+V+A+DI++ + +++++ AK Q+ + IRT H D
Sbjct: 252 LTVLDACAAPGGKTTHIAEKMHGTGMVHALDIHEKKTKLIDQAAKRLQLLN-IRTAHLDA 310
Query: 397 RTFADNSTVKC-DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLV 455
RT + + D++L+DAPCSG GVL ++ D+++ + +D+ +L +Q +LD S LV
Sbjct: 311 RTASTMFEPETFDRILVDAPCSGFGVLRRKPDIKYAKTEKDIHKLAEIQLAILDDVSQLV 370
Query: 456 KPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDF--VTKHGFFFSDPIK 513
K G+LVYSTC+ID EENE + AFL +HPEF+++P ++P + K F P
Sbjct: 371 KENGILVYSTCTIDKEENETVLLAFLEKHPEFTLEPV--VLPEKLAQIKKDDFIQLLPTD 428
Query: 514 HSLDGAFAARL 524
DG F + L
Sbjct: 429 IGSDGFFVSSL 439
>gi|322418095|ref|YP_004197318.1| sun protein [Geobacter sp. M18]
gi|320124482|gb|ADW12042.1| sun protein [Geobacter sp. M18]
Length = 479
Score = 199 bits (506), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 158/481 (32%), Positives = 246/481 (51%), Gaps = 54/481 (11%)
Query: 58 SPHRAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDL-DDRDLRLVT 116
+P RA + L+RI+ +FAD+L D+E+ +KD+ D L+T
Sbjct: 35 NPRRAAFDI-LLRIEKEKSFADILI-------DHEL----------SKDMIKGADRGLLT 76
Query: 117 DIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDEN 175
++V G +R + LDH+I ++ +E +L +LR+G Y+ LD +P A V+E
Sbjct: 77 ELVYGVLRRQGTLDHIIGQF--SKQRTDKLELYVLLLLRLGLYQCFFLDRVPVSAAVNET 134
Query: 176 VRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQ--ARALATIYSHPVWM 233
V+LAK L P A +N ILR +DN S P DRA+ LA YSHP W+
Sbjct: 135 VKLAK-ELAPRASGFINAILRNADRNRDNISYP-------DRAENPVGYLAVRYSHPAWL 186
Query: 234 VRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHL 293
+W + LG E A L + P F++R N+ + ++R L+ +L + E
Sbjct: 187 TSQWCEQLGVEGAEALAAAMSEPPPFTIRVNTLR-ISREALMARLAEEGISC-SETRWSP 244
Query: 294 DEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYM 353
D IR+ Q + + ++GL VQDES+ L + P+ G ++D C+APGGKT +
Sbjct: 245 DG-IRLNQSGQ-ITRLPSFRDGLFTVQDESSQLAPLFLSPEKGDRVLDACSAPGGKTTQI 302
Query: 354 ASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNST--------V 405
A + G +YA D+N +LR++ ET + SV RTF ++T V
Sbjct: 303 AQLMGNSGEIYACDVNHKKLRLIKETCDRLGITSV--------RTFTMDATSPSPAIKEV 354
Query: 406 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465
++L+DAPCSGLGV+ + + +W++ +D+ + Q +L+ + G L+Y+T
Sbjct: 355 TFQRILVDAPCSGLGVIRRNPEGKWSKSPDDLLQQARTQVTILENLCKYLDKSGTLLYAT 414
Query: 466 CSIDPEENEERVEAFLLRHPEFSIDPADGLVP--SDFVTKHGFFFSDPIKHSLDGAFAAR 523
CS +ENE ++ FL HPEF + L P + T+ GFF S P + +DG FAAR
Sbjct: 415 CSTSVQENEYVIDTFLREHPEFVAEDLRTLFPEFAPLFTERGFFRSWPHRDGMDGFFAAR 474
Query: 524 L 524
L
Sbjct: 475 L 475
>gi|428279169|ref|YP_005560904.1| hypothetical protein BSNT_02587 [Bacillus subtilis subsp. natto
BEST195]
gi|291484126|dbj|BAI85201.1| hypothetical protein BSNT_02587 [Bacillus subtilis subsp. natto
BEST195]
Length = 447
Score = 199 bits (506), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 119/391 (30%), Positives = 219/391 (56%), Gaps = 18/391 (4%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
++ +L D+D L+T++V GT++ + LD+++ + + ++P ++Q+LR+ Y++
Sbjct: 32 IKSNELSDQDRGLLTELVYGTLQNKIALDYMLKPFINKPQ---KVKPWVIQLLRLSLYQM 88
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
L+ +P A + E V +AK+ G + VNG+LR + +P + +
Sbjct: 89 EYLEKIPDRAAIHEAVEIAKIRGHKGIASFVNGVLRSI------QREGVPSFDAIEDP-V 141
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
R LAT SHP W+V+ W G E A K+ + P +LR N K RA+L+ Q+
Sbjct: 142 RRLATETSHPEWLVKEWADAYGFEAAEKICRIHLIPPKQTLRVNQMKA-DRAELLDQMAA 200
Query: 281 LKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIV 340
++V E ++ +++ G + + G ++QDES+ LV +DP+P ++++
Sbjct: 201 EGIEV--EKGDLAEDAVKLLKG--TIAGTHFFQNGEVSIQDESSMLVARALDPKPDETVL 256
Query: 341 DCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 400
D CAAPGGK+ ++A + +G V ++D++K +++++ E A + ++I D R
Sbjct: 257 DACAAPGGKSAHIAELMQNKGSVTSLDLHKHKVKLIKEAADRLGL-TIIHAETMDARKAG 315
Query: 401 DN-STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGG 459
+ + D++L+DAPCSG GV+ ++ D+++ ++ +D L +Q +L + LVK GG
Sbjct: 316 ETFENEQFDRILVDAPCSGFGVIRRKPDMKYTKKPDDSARLAEIQLSILREIAPLVKKGG 375
Query: 460 VLVYSTCSIDPEENEERVEAFLLRHPEFSID 490
LVYSTC++D EN+E + AF+ HP+F D
Sbjct: 376 TLVYSTCTMDRTENDEVIHAFIQEHPDFEPD 406
>gi|321315340|ref|YP_004207627.1| 16S rRNA methyltransferase B [Bacillus subtilis BSn5]
gi|320021614|gb|ADV96600.1| 16S rRNA methyltransferase B [Bacillus subtilis BSn5]
Length = 447
Score = 199 bits (506), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 119/391 (30%), Positives = 219/391 (56%), Gaps = 18/391 (4%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
++ +L D+D L+T++V GT++ + LD+++ + + ++P ++Q+LR+ Y++
Sbjct: 32 IKSNELSDQDRGLLTELVYGTLQNKIALDYMLKPFINKPQ---KVKPWVIQLLRLSLYQM 88
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
L+ +P A + E V +AK+ G + VNG+LR + +P + +
Sbjct: 89 EYLEKIPDRAAIHEAVEIAKIRGHKGIASFVNGVLRSI------QREGVPSFDAIEDP-V 141
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
R LAT SHP W+V+ W G E A K+ + P +LR N K RA+L+ Q+
Sbjct: 142 RRLATETSHPEWLVKEWADAYGFEAAEKICRIHLIPPKQTLRVNQMKA-DRAELLDQMAA 200
Query: 281 LKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIV 340
++V E ++ +++ G + + G ++QDES+ LV +DP+P ++++
Sbjct: 201 EGIEV--EKGDLAEDAVKLLKG--TIAGTHFFQNGEVSIQDESSMLVARALDPKPDETVL 256
Query: 341 DCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 400
D CAAPGGK+ ++A + +G V ++D++K +++++ E A + ++I D R
Sbjct: 257 DACAAPGGKSAHIAELMKNKGSVTSLDLHKHKVKLIKEAADRLGL-TIIHAETMDARKAG 315
Query: 401 DN-STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGG 459
+ + D++L+DAPCSG GV+ ++ D+++ ++ +D L +Q +L + LVK GG
Sbjct: 316 ETFENEQFDRILVDAPCSGFGVIRRKPDMKYTKKPDDSARLAEIQLSILREIAPLVKKGG 375
Query: 460 VLVYSTCSIDPEENEERVEAFLLRHPEFSID 490
LVYSTC++D EN+E + AF+ HP+F D
Sbjct: 376 TLVYSTCTMDRTENDEVIHAFIQEHPDFEPD 406
>gi|315282824|ref|ZP_07871146.1| ribosomal RNA small subunit methyltransferase B [Listeria marthii
FSL S4-120]
gi|313613532|gb|EFR87354.1| ribosomal RNA small subunit methyltransferase B [Listeria marthii
FSL S4-120]
Length = 400
Score = 199 bits (505), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 134/418 (32%), Positives = 230/418 (55%), Gaps = 30/418 (7%)
Query: 114 LVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEP--LLLQILRIGFYEIVKLD-MPPYA 170
++T++V GT + + LD+ + F + EP + +LR+ Y++ LD +P +A
Sbjct: 1 MLTELVYGTTQRKITLDYYLA-------PFLNKEPDNWVKNLLRMSVYQLTFLDKVPEHA 53
Query: 171 VVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEG-NDRAQARALATIYSH 229
+++E +AK G VNG+LR ++ +P ++ D Q A+ T S
Sbjct: 54 ILNEAGDIAKDLGHQGVTKFVNGVLRNVI------RKGVPSIDAIKDPVQKIAVET--SL 105
Query: 230 PVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHEL 289
P W+ +RW G E+ ++ + P S+R N + + L+ +LN + V
Sbjct: 106 PEWLAKRWADQYGLEKLREIGLAFLVAPHQSIRVNQTE-IPTEQLIKELNDQGISVTR-- 162
Query: 290 SLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGK 349
+ +DE + V+ G +V + K+G C++QDES+ L + + +++D CAAPGGK
Sbjct: 163 NEFIDEALLVEKG--SVAETKAYKDGKCSIQDESSMLAAYALQLEDNLTVLDACAAPGGK 220
Query: 350 TLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKC-D 408
T ++A + G G+V+A+DI++ + +++++ AK Q+ + IRT H D RT + + D
Sbjct: 221 TTHIAEKMHGTGMVHALDIHEKKTKLIDQAAKRLQLLN-IRTAHLDARTASTMFEPETFD 279
Query: 409 KVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSI 468
++L+DAPCSG GVL ++ D+++ + +D+ +L +Q +LD S LVK G+LVYSTC+I
Sbjct: 280 RILVDAPCSGFGVLRRKPDIKYAKTEKDIHKLAEIQLAILDDVSQLVKENGILVYSTCTI 339
Query: 469 DPEENEERVEAFLLRHPEFSIDPADGLVPSDF--VTKHGFFFSDPIKHSLDGAFAARL 524
D EENE + AFL +HPEF I+P ++P + K + P DG F + L
Sbjct: 340 DKEENETVLRAFLEKHPEFKIEPV--VLPEKLAQIKKDDYIQLLPTDIGSDGFFVSSL 395
>gi|228909690|ref|ZP_04073513.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
thuringiensis IBL 200]
gi|228849979|gb|EEM94810.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
thuringiensis IBL 200]
Length = 429
Score = 199 bits (505), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 133/387 (34%), Positives = 214/387 (55%), Gaps = 22/387 (5%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+D +D+ L+T+IV GTI+ R LD+ + +E + +LR+ Y+++ LD
Sbjct: 21 IDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLK-----KKVEAWVRVLLRLSLYQMIYLDR 75
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A + E V +AK G +VNG+LR + +P E D + A+AT
Sbjct: 76 VPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSI----QREGVPSVD-EIKDPVERLAIAT 130
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
SHPVW+V+ WT G E A K+ N P + R N K VT + + L ++
Sbjct: 131 --SHPVWLVQEWTSAYGLETAEKMCEVNMLPPVPTARVNVDK-VTVEEAIELLASEGIEA 187
Query: 286 PH-ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 344
+LS D+ I+++ G NV K+G ++QDES+ LV ++P G++++D CA
Sbjct: 188 KRGDLS---DDAIQIERG--NVAHTEAFKKGFLSIQDESSMLVARALEPNEGEAVLDSCA 242
Query: 345 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-S 403
APGGKT ++A L G G V ++D++ ++R++ + A+ + +V T D R ++ S
Sbjct: 243 APGGKTTHIAERLKGTGKVMSLDLHAHKVRLIKQQAERLGLENV-ETKALDARKVQEHFS 301
Query: 404 TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463
DK+L+DAPCSG GV+ ++ D++ + D E L +Q +L+ + L+K GG LVY
Sbjct: 302 NETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSERLSTIQLAILEKIAPLLKQGGRLVY 361
Query: 464 STCSIDPEENEERVEAFLLRHPEFSID 490
STC+I+ ENE+ ++ FL HPEF D
Sbjct: 362 STCTIEKIENEQVIDKFLKEHPEFEWD 388
>gi|408411001|ref|ZP_11182188.1| RNA methyltransferase Sun [Lactobacillus sp. 66c]
gi|407874834|emb|CCK83994.1| RNA methyltransferase Sun [Lactobacillus sp. 66c]
Length = 438
Score = 198 bits (504), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 141/417 (33%), Positives = 218/417 (52%), Gaps = 27/417 (6%)
Query: 113 RLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAV 171
RL T++V GT++ + YLD+ + L + + +EPLLL + Y+++ LD +P AV
Sbjct: 42 RLATNLVYGTLQNKLYLDYQLKDLVKAKLKEAYIEPLLL----MSIYQLLFLDKVPARAV 97
Query: 172 VDENVRLAKVALRPGAGN--LVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSH 229
+DE +LAK +P + LVNGILR LPK + +D L+ YS
Sbjct: 98 LDEANKLAKAFGKPKSSGYRLVNGILRSF----QRRGTILPKEDDSDY-----LSVKYSE 148
Query: 230 PVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHEL 289
P W+ G + A K+M N+ +R +S V +V L P E
Sbjct: 149 PKWLADYLVANWGPKRAEKIMASFNTHAKNEIRISSM--VKEGQVVYDLKKAHFN-PVES 205
Query: 290 SLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGK 349
+L + + G +I KEG VQDE+A LV D + ++D CAAPGGK
Sbjct: 206 ALADRSYSLSRGG---IILTDFFKEGQVTVQDEAASLVAEAFDFTGNERVLDSCAAPGGK 262
Query: 350 TLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVKCD 408
T+ +A + +G V A+DI++ +LR++ E A+ QV ++T D R S + D
Sbjct: 263 TIQLAEKVP-EGQVTALDIHEKKLRLVRENAQRMQVADRVKTKALDARKAGGYFSKGEFD 321
Query: 409 KVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSI 468
K+L+DAPCSGLG+L ++ ++R++++ D+ L +Q ++L+ + L+K GG LVYSTCSI
Sbjct: 322 KILIDAPCSGLGLLRRKPEIRYSKQPADITNLAQIQLDILNEVAGLLKSGGELVYSTCSI 381
Query: 469 DPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARLV 525
EENEE V+ FL HP+F + P + + G P ++ DG F A+
Sbjct: 382 SVEENEENVQKFLKAHPDFVLKP---FKTAKVKAEQGMLKILPDSYNSDGFFIAKFT 435
>gi|373857268|ref|ZP_09600010.1| sun protein [Bacillus sp. 1NLA3E]
gi|372452918|gb|EHP26387.1| sun protein [Bacillus sp. 1NLA3E]
Length = 449
Score = 198 bits (504), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 131/391 (33%), Positives = 220/391 (56%), Gaps = 28/391 (7%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+D D+ L+T++ GT++ + LD+ + D K ++ ++ +LR+ Y++V LD
Sbjct: 39 VDRIDVGLLTELTYGTLQRKMTLDYYLEPFLKDSK---KIQGWVMNLLRVTLYQMVYLDK 95
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVL--LKDNNSLPLPKLEGNDRAQARAL 223
+P A + E V +AK G LVNG+LR + L++ + + P L
Sbjct: 96 IPDRAAIYEAVEIAKKRGHKGISGLVNGVLRNIQRSGLRNLSDIVDP---------VERL 146
Query: 224 ATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKL 283
+ SHP+W+V+RW LG ++ ++ N + P + R N K ++R + L
Sbjct: 147 SIETSHPLWLVKRWVTQLGFDKTKEMCELNLTAPVQTARVNITK-ISRDACLALLQEEGY 205
Query: 284 QVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCC 343
V E S + E I+ G N+ + K+GL +QDES+ LV + ++D C
Sbjct: 206 NV--EASPVIPEAIKALRG--NLATSKAFKDGLFTIQDESSMLVAYALGISLNDRVLDAC 261
Query: 344 AAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT----F 399
AAPGGK+ ++A L G V ++D+++ ++++++E+AK +N+ I T D R F
Sbjct: 262 AAPGGKSTHIAERLDHTGAVVSLDLHEHKVKLISESAKRLGLNN-IETKALDSRKVQEYF 320
Query: 400 ADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGG 459
A S DK+LLDAPCSGLGV+ ++ D+++ +++ED+ +L+++Q +L + + L+K GG
Sbjct: 321 APES---FDKILLDAPCSGLGVMRRKPDMKYTKKVEDLNKLQVIQTDLFSSVAPLLKKGG 377
Query: 460 VLVYSTCSIDPEENEERVEAFLLRHPEFSID 490
+LVYSTC+ID EEN VE FL +HPEF D
Sbjct: 378 ILVYSTCTIDKEENSTVVENFLQKHPEFYGD 408
>gi|196038686|ref|ZP_03105994.1| sun protein [Bacillus cereus NVH0597-99]
gi|196030409|gb|EDX69008.1| sun protein [Bacillus cereus NVH0597-99]
Length = 444
Score = 198 bits (504), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 133/387 (34%), Positives = 213/387 (55%), Gaps = 22/387 (5%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+D +D+ L+T+IV GTI+ R LD+ + +E + +LR+ Y+++ LD
Sbjct: 36 IDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLK-----KKVEAWVRVLLRLSLYQMIYLDR 90
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A + E V +AK G +VNG+LR + +P E D + A+AT
Sbjct: 91 VPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSI----QREGVPSVN-EIKDPVERLAIAT 145
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
SHPVW+V+ WT G E A K+ N P + R N K +T + + L ++
Sbjct: 146 --SHPVWLVQEWTAEYGLETAEKMCEVNMLPPVPTARVNVDK-ITVEEAITLLASEGIEA 202
Query: 286 PH-ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 344
+LS D+ I+++ G NV K+G ++QDES+ LV ++P G I+D CA
Sbjct: 203 KRGDLS---DDAIQIEKG--NVAHTDAFKKGFLSIQDESSMLVARALEPDEGDVILDSCA 257
Query: 345 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-S 403
APGGKT ++A L G G V ++D++ ++R++ + A+ + +V T D R ++ +
Sbjct: 258 APGGKTTHIAERLKGTGQVMSLDLHAHKVRLIKQQAERLGLENV-ETKALDARKVQEHFA 316
Query: 404 TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463
DK+L+DAPCSG GV+ ++ D++ + D E L ++Q +L+ + L+K GG LVY
Sbjct: 317 NETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSERLSMIQFAILEKIAPLLKQGGRLVY 376
Query: 464 STCSIDPEENEERVEAFLLRHPEFSID 490
STC+I+ ENE+ +E FL HPEF D
Sbjct: 377 STCTIEKIENEQVIERFLQEHPEFEWD 403
>gi|229180141|ref|ZP_04307485.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
172560W]
gi|228603350|gb|EEK60827.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
172560W]
Length = 429
Score = 198 bits (504), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 133/387 (34%), Positives = 213/387 (55%), Gaps = 22/387 (5%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+D +D+ L+T+IV GTI+ R LD+ + +E + +LR+ Y+++ LD
Sbjct: 21 IDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLK-----KKVEAWVRVLLRLSLYQMIYLDR 75
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A + E V +AK G +VNG+LR + +P E D + A+AT
Sbjct: 76 VPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSI----QREGVPSVD-EIKDPVERLAIAT 130
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
SHPVW+V+ WT G E A K+ N P + R N K VT + + L ++
Sbjct: 131 --SHPVWLVQEWTSAYGLETAEKMCEVNMLPPVPTARVNVDK-VTVEEAIELLASEGIEA 187
Query: 286 PH-ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 344
+LS D+ I+++ G NV K+G ++QDES+ LV ++P G +++D CA
Sbjct: 188 KRGDLS---DDAIQIERG--NVAHTEAFKKGFLSIQDESSMLVARALEPNTGDAVLDSCA 242
Query: 345 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-S 403
APGGKT ++A L G G V ++D++ ++R++ + A+ + +V T D R ++ +
Sbjct: 243 APGGKTAHIAERLKGTGKVMSLDLHAHKVRLIKQQAERLGLENV-ETKALDARKVQEHFA 301
Query: 404 TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463
DK+L+DAPCSG GV+ ++ D++ + D E L +Q +L+ + L+K GG LVY
Sbjct: 302 NETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSERLSTIQIAILEKIAPLLKQGGRLVY 361
Query: 464 STCSIDPEENEERVEAFLLRHPEFSID 490
STC+I+ ENE+ +E FL HPEF D
Sbjct: 362 STCTIEKIENEQVIEKFLQEHPEFEWD 388
>gi|65321192|ref|ZP_00394151.1| COG0144: tRNA and rRNA cytosine-C5-methylases [Bacillus anthracis
str. A2012]
Length = 444
Score = 198 bits (504), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 133/387 (34%), Positives = 212/387 (54%), Gaps = 22/387 (5%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+D +D+ L+T+IV GTI+ R LD+ + +E + +LR+ Y+++ LD
Sbjct: 36 IDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLK-----KKVEAWVRVLLRLSLYQMIYLDR 90
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A + E V +AK G +VNG+LR + +P E D + A+AT
Sbjct: 91 VPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSI----QREGVPSVD-EIKDPVERLAIAT 145
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
SHPVW+V+ WT G E A K+ N P + R N K +T + + L ++
Sbjct: 146 --SHPVWLVQEWTAEYGLETAEKMCEVNMLPPVPTARVNVDK-ITVEEAITLLASEGIEA 202
Query: 286 PH-ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 344
+LS D+ I++ G NV K+G ++QDES+ LV ++P G I+D CA
Sbjct: 203 KRGDLS---DDAIQIXKG--NVAHTDAFKKGFLSIQDESSMLVARALEPDEGDVILDSCA 257
Query: 345 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-S 403
APGGKT ++A L G G V ++D++ ++R++ + A+ + +V T D R ++ +
Sbjct: 258 APGGKTTHIAERLKGTGQVMSLDLHAHKVRLIKQQAERLXLENV-ETKALDARKVQEHFA 316
Query: 404 TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463
DK+L+DAPCSG GV+ ++ D++ + D E L ++Q +L+ + L+K GG LVY
Sbjct: 317 NEXFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSERLSMIQFAILEKXAPLLKQGGRLVY 376
Query: 464 STCSIDPEENEERVEAFLLRHPEFSID 490
STC+I+ ENE+ +E FL HPEF D
Sbjct: 377 STCTIEKIENEQVIERFLQEHPEFEWD 403
>gi|30263868|ref|NP_846245.1| sun protein [Bacillus anthracis str. Ames]
gi|47529294|ref|YP_020643.1| sun protein [Bacillus anthracis str. 'Ames Ancestor']
gi|49186715|ref|YP_029967.1| sun protein [Bacillus anthracis str. Sterne]
gi|49478421|ref|YP_037926.1| sun protein [Bacillus thuringiensis serovar konkukian str. 97-27]
gi|118479087|ref|YP_896238.1| sun protein [Bacillus thuringiensis str. Al Hakam]
gi|165872297|ref|ZP_02216934.1| sun protein [Bacillus anthracis str. A0488]
gi|167636414|ref|ZP_02394713.1| sun protein [Bacillus anthracis str. A0442]
gi|167641141|ref|ZP_02399396.1| sun protein [Bacillus anthracis str. A0193]
gi|170688847|ref|ZP_02880050.1| sun protein [Bacillus anthracis str. A0465]
gi|170708813|ref|ZP_02899249.1| sun protein [Bacillus anthracis str. A0389]
gi|177654922|ref|ZP_02936639.1| sun protein [Bacillus anthracis str. A0174]
gi|190565749|ref|ZP_03018668.1| sun protein [Bacillus anthracis str. Tsiankovskii-I]
gi|196035830|ref|ZP_03103232.1| sun protein [Bacillus cereus W]
gi|196047441|ref|ZP_03114653.1| sun protein [Bacillus cereus 03BB108]
gi|218904995|ref|YP_002452829.1| sun protein [Bacillus cereus AH820]
gi|227813227|ref|YP_002813236.1| ribosomal RNA small subunit methyltransferase B [Bacillus anthracis
str. CDC 684]
gi|229603771|ref|YP_002868102.1| ribosomal RNA small subunit methyltransferase B [Bacillus anthracis
str. A0248]
gi|254683426|ref|ZP_05147286.1| ribosomal RNA small subunit methyltransferase B [Bacillus anthracis
str. CNEVA-9066]
gi|254721397|ref|ZP_05183186.1| ribosomal RNA small subunit methyltransferase B [Bacillus anthracis
str. A1055]
gi|254739848|ref|ZP_05197541.1| ribosomal RNA small subunit methyltransferase B [Bacillus anthracis
str. Kruger B]
gi|254751038|ref|ZP_05203077.1| ribosomal RNA small subunit methyltransferase B [Bacillus anthracis
str. Vollum]
gi|254756703|ref|ZP_05208732.1| ribosomal RNA small subunit methyltransferase B [Bacillus anthracis
str. Australia 94]
gi|301055356|ref|YP_003793567.1| sun protein [Bacillus cereus biovar anthracis str. CI]
gi|376267761|ref|YP_005120473.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
F837/76]
gi|386737687|ref|YP_006210868.1| Sun protein [Bacillus anthracis str. H9401]
gi|421507405|ref|ZP_15954325.1| 16S rRNA methyltransferase B [Bacillus anthracis str. UR-1]
gi|421639620|ref|ZP_16080211.1| 16S rRNA methyltransferase B [Bacillus anthracis str. BF1]
gi|423550386|ref|ZP_17526713.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
ISP3191]
gi|30258512|gb|AAP27731.1| ribosomal RNA small subunit methyltransferase B [Bacillus anthracis
str. Ames]
gi|47504442|gb|AAT33118.1| sun protein [Bacillus anthracis str. 'Ames Ancestor']
gi|49180642|gb|AAT56018.1| sun protein [Bacillus anthracis str. Sterne]
gi|49329977|gb|AAT60623.1| sun protein [Bacillus thuringiensis serovar konkukian str. 97-27]
gi|118418312|gb|ABK86731.1| sun protein [Bacillus thuringiensis str. Al Hakam]
gi|164711973|gb|EDR17513.1| sun protein [Bacillus anthracis str. A0488]
gi|167510921|gb|EDR86312.1| sun protein [Bacillus anthracis str. A0193]
gi|167528156|gb|EDR90943.1| sun protein [Bacillus anthracis str. A0442]
gi|170126298|gb|EDS95189.1| sun protein [Bacillus anthracis str. A0389]
gi|170667202|gb|EDT17962.1| sun protein [Bacillus anthracis str. A0465]
gi|172080433|gb|EDT65520.1| sun protein [Bacillus anthracis str. A0174]
gi|190562668|gb|EDV16634.1| sun protein [Bacillus anthracis str. Tsiankovskii-I]
gi|195991479|gb|EDX55445.1| sun protein [Bacillus cereus W]
gi|196021749|gb|EDX60444.1| sun protein [Bacillus cereus 03BB108]
gi|218535394|gb|ACK87792.1| sun protein [Bacillus cereus AH820]
gi|227005311|gb|ACP15054.1| ribosomal RNA small subunit methyltransferase B [Bacillus anthracis
str. CDC 684]
gi|229268179|gb|ACQ49816.1| ribosomal RNA small subunit methyltransferase B [Bacillus anthracis
str. A0248]
gi|300377525|gb|ADK06429.1| sun protein [Bacillus cereus biovar anthracis str. CI]
gi|364513561|gb|AEW56960.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
F837/76]
gi|384387539|gb|AFH85200.1| Sun protein [Bacillus anthracis str. H9401]
gi|401190002|gb|EJQ97052.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
ISP3191]
gi|401822539|gb|EJT21689.1| 16S rRNA methyltransferase B [Bacillus anthracis str. UR-1]
gi|403393285|gb|EJY90530.1| 16S rRNA methyltransferase B [Bacillus anthracis str. BF1]
Length = 444
Score = 198 bits (504), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 133/387 (34%), Positives = 213/387 (55%), Gaps = 22/387 (5%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+D +D+ L+T+IV GTI+ R LD+ + +E + +LR+ Y+++ LD
Sbjct: 36 IDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLK-----KKVEAWVRVLLRLSLYQMIYLDR 90
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A + E V +AK G +VNG+LR + +P E D + A+AT
Sbjct: 91 VPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSI----QREGVPSVD-EIKDPVERLAIAT 145
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
SHPVW+V+ WT G E A K+ N P + R N K +T + + L ++
Sbjct: 146 --SHPVWLVQEWTAEYGLETAEKMCEVNMLPPVPTARVNVDK-ITVEEAITLLASEGIEA 202
Query: 286 PH-ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 344
+LS D+ I+++ G NV K+G ++QDES+ LV ++P G I+D CA
Sbjct: 203 KRGDLS---DDAIQIEKG--NVAHTDAFKKGFLSIQDESSMLVARALEPDEGDVILDSCA 257
Query: 345 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-S 403
APGGKT ++A L G G V ++D++ ++R++ + A+ + +V T D R ++ +
Sbjct: 258 APGGKTTHIAERLKGTGQVMSLDLHAHKVRLIKQQAERLGLENV-ETKALDARKVQEHFA 316
Query: 404 TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463
DK+L+DAPCSG GV+ ++ D++ + D E L ++Q +L+ + L+K GG LVY
Sbjct: 317 NETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSERLSMIQFAILEKIAPLLKQGGRLVY 376
Query: 464 STCSIDPEENEERVEAFLLRHPEFSID 490
STC+I+ ENE+ +E FL HPEF D
Sbjct: 377 STCTIEKIENEQVIERFLQEHPEFEWD 403
>gi|217964025|ref|YP_002349703.1| ribosomal RNA small subunit methyltransferase B [Listeria
monocytogenes HCC23]
gi|386008594|ref|YP_005926872.1| tRNA and rRNA cytosine-C5-methylase [Listeria monocytogenes L99]
gi|386027202|ref|YP_005947978.1| putative rRNA cytosine-C5-methylase (Sun protein) [Listeria
monocytogenes M7]
gi|217333295|gb|ACK39089.1| ribosomal RNA small subunit methyltransferase B [Listeria
monocytogenes HCC23]
gi|307571404|emb|CAR84583.1| tRNA and rRNA cytosine-C5-methylase, putative [Listeria
monocytogenes L99]
gi|336023783|gb|AEH92920.1| putative rRNA cytosine-C5-methylase (Sun protein) [Listeria
monocytogenes M7]
Length = 444
Score = 198 bits (504), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 135/431 (31%), Positives = 236/431 (54%), Gaps = 30/431 (6%)
Query: 101 GFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEP--LLLQILRIGF 158
+ + L+ D L+T++V GT + + LD+ + F + EP + +LR+
Sbjct: 32 ALKKQKLNPLDKGLLTELVYGTTQRKITLDYYLA-------PFLNKEPDNWVKNLLRMSV 84
Query: 159 YEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEG-ND 216
Y++ LD +P +A+++E +AK G VNG+LR ++ +P ++ D
Sbjct: 85 YQLTFLDKVPEHAILNEAGDIAKDLGHQGVTKFVNGVLRNVI------RKGVPSIDAIKD 138
Query: 217 RAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVM 276
Q A+ T S P W+ +RW G ++ ++ + P S+R N + + L+
Sbjct: 139 PVQKIAVET--SLPEWLAKRWADQYGIKKLREIGLAFLVAPHQSIRVNQTE-IPTEQLIK 195
Query: 277 QLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPG 336
+LN + V + ++E + V+ G +V + K+G C++QDES+ L + +
Sbjct: 196 ELNDQGITVTR--NEFIEEALLVEKG--SVAETKAYKDGKCSIQDESSMLAAYALQLEDN 251
Query: 337 QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADL 396
+++D CAAPGGKT ++A + G G+V+A+DI++ + +++++ AK Q+ + IRT H D
Sbjct: 252 LTVLDACAAPGGKTTHIAEKMHGTGMVHALDIHEKKTKLIDQAAKRLQLLN-IRTAHLDA 310
Query: 397 RTFADNSTVKC-DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLV 455
RT + + D++L+DAPCSG GVL ++ D+++ + +D+ +L +Q +LD S LV
Sbjct: 311 RTASTMFEPETFDRILVDAPCSGFGVLRRKPDIKYAKTEKDIHKLAEIQLAILDDVSQLV 370
Query: 456 KPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDF--VTKHGFFFSDPIK 513
K G+LVYSTC+ID EENE + AFL +HPEF+++P ++P + K F P
Sbjct: 371 KENGILVYSTCTIDKEENETVLRAFLEKHPEFALEPV--VLPEKLAQIKKDDFIQLLPTD 428
Query: 514 HSLDGAFAARL 524
DG F + L
Sbjct: 429 IGSDGFFVSSL 439
>gi|335429783|ref|ZP_08556681.1| 16S rRNA methyltransferase B [Haloplasma contractile SSD-17B]
gi|334889793|gb|EGM28078.1| 16S rRNA methyltransferase B [Haloplasma contractile SSD-17B]
Length = 439
Score = 198 bits (503), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 132/392 (33%), Positives = 215/392 (54%), Gaps = 23/392 (5%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
++K++D D+ L+T+IV GTI+ + LD+ + +KT + + ILRI Y++
Sbjct: 30 IKSKEIDPVDVSLLTEIVYGTIQNKITLDYYLKDFIDMKKT----KGWVKNILRISLYQM 85
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
LD +P +A+++E V LAK +GN VN +LR N S K + + Q
Sbjct: 86 HFLDKIPNHAILNEAVTLAKDRGGKNSGNFVNAVLR-------NISRKGLKSLDDIKDQT 138
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
L+ SHP W+V W + G + KL NNS PS R N K + + L+ +L
Sbjct: 139 ERLSIQTSHPRWLVSLWLEQYGLDTTTKLCNANNSRPSIHCRLNLTKDDSNS-LIKKLED 197
Query: 281 LKLQVPHELSLH--LDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQS 338
+++V S H ++E +++ G N+I L +G +QD S+ LV ++DP
Sbjct: 198 QEIEV----SRHPFIEEGVKIIKG--NIIGTSLYTDGYLTIQDFSSMLVAKILDPSESDD 251
Query: 339 IVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT 398
++D CAAPGGKT ++A +S G V A DI ++++++E + I+T D R
Sbjct: 252 VLDTCAAPGGKTTHIAELMSNSGSVSACDIYDHKIKLIDEHVDRLGLKQ-IKTYKQDARE 310
Query: 399 FADNSTVKC-DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKP 457
D+VL+DAPCSGLGV+ ++ ++++++ +D+ ++ LQ E++D A L+KP
Sbjct: 311 LTKEFKAGTFDRVLIDAPCSGLGVIKRKPEIKYHKSRKDLSQIVKLQKEIIDDAVKLLKP 370
Query: 458 GGVLVYSTCSIDPEENEERVEAFLLRHPEFSI 489
GG LVYSTC+I+ ENE+ V L + E S+
Sbjct: 371 GGRLVYSTCTINKRENEDIVNYILKNNSELSL 402
>gi|229111336|ref|ZP_04240889.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
Rock1-15]
gi|228672112|gb|EEL27403.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
Rock1-15]
Length = 429
Score = 198 bits (503), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 133/387 (34%), Positives = 212/387 (54%), Gaps = 22/387 (5%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+D +D+ L+T+IV GTI+ R LD+ + +E + +LR+ Y+++ LD
Sbjct: 21 IDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLK-----KKVEAWVRVLLRLSLYQMIYLDR 75
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A + E V +AK G +VNG+LR + +P E D + A+ T
Sbjct: 76 VPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSI----QREGVPSVD-EIKDPVERLAITT 130
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
SHPVW+V+ WT G E A K+ N P + R N K VT + + L ++
Sbjct: 131 --SHPVWLVQEWTSEYGLETAEKMCEVNMLPPVPTARVNVDK-VTVEEAIELLASEGIEA 187
Query: 286 PH-ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 344
+LS D+ I+++ G NV K+G ++QDES+ LV ++P G +++D CA
Sbjct: 188 KRGDLS---DDAIQIERG--NVAHTEAFKKGFLSIQDESSMLVARALEPNTGDAVLDSCA 242
Query: 345 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-S 403
APGGKT ++A L G G V ++D++ ++R++ + A+ + +V T D R ++ S
Sbjct: 243 APGGKTTHIAERLKGTGKVMSLDLHAHKVRLIKQQAERLGLENV-ETKALDARKVQEHFS 301
Query: 404 TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463
DK+L+DAPCSG GV+ ++ D++ + D E L +Q +L+ + L+K GG LVY
Sbjct: 302 NETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSERLSTIQIAILEKIAPLLKQGGRLVY 361
Query: 464 STCSIDPEENEERVEAFLLRHPEFSID 490
STC+I+ ENE+ +E FL HPEF D
Sbjct: 362 STCTIEKIENEQVIEKFLQEHPEFEWD 388
>gi|416350348|ref|ZP_11680855.1| 16S rRNA methyltransferase B [Clostridium botulinum C str.
Stockholm]
gi|338196305|gb|EGO88506.1| 16S rRNA methyltransferase B [Clostridium botulinum C str.
Stockholm]
Length = 443
Score = 198 bits (503), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 132/432 (30%), Positives = 230/432 (53%), Gaps = 25/432 (5%)
Query: 101 GFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYE 160
+ ++++D L+T+IV GTI+++ +D + L + +K S++ +L ILRI Y+
Sbjct: 29 SLNNQKINEKDKGLITEIVYGTIKYKYTIDAI--LNTYLKKGTKSVDSYILNILRITIYQ 86
Query: 161 IVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQ 219
I LD +P +A V+E V +AK LVNG+LR N L K+ N +
Sbjct: 87 IKYLDKIPNFAAVNEAVNIAKKHKSIRESKLVNGVLR-------NYLRNLDKVYYNKNSV 139
Query: 220 ARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLN 279
L YS W+V+ + +E K++ N P+ ++R N+ K T D
Sbjct: 140 VERLCFEYSCEKWLVKMFINQYNEEITEKILKGLNERPAVTVRVNNLK--TDYDEAFN-K 196
Query: 280 LLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSI 339
L + E E I + G +++ L ++G VQDESA LV A +D + G +
Sbjct: 197 LEEYGYSIEEGYVCPEAIIINKG-KSIESNPLFEDGKVTVQDESAMLVAATMDIKEGSLV 255
Query: 340 VDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF 399
+D C+APGGKT +++ ++ G V A DI++ +L ++ + AK +N+ I D F
Sbjct: 256 LDLCSAPGGKTTHISEIMNNTGKVMAFDIHENKLSLVKDNAKRLGINN-IECSKLDASKF 314
Query: 400 ADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGG 459
+ D VL+D PCSGLG++ K+ ++++ + +E ++++ +Q E++ A+ VK GG
Sbjct: 315 NEKLKETADAVLIDVPCSGLGIIRKKPEIKYTKNMESVKDIVNIQKEIMKNAARYVKVGG 374
Query: 460 VLVYSTCSIDPEENEERVEAFLLRHPEFSIDP-----ADGLVPSDFVTKHGFFFSDPIKH 514
L+YSTC+I+ +ENE+ ++ F+ PE++++P D ++ ++ T P K+
Sbjct: 375 TLLYSTCTINKKENEQNIDWFIRNFPEYTVEPIFYGEMDNIIYNENRTVTIL----PNKY 430
Query: 515 SLDGAFAARLVR 526
+DG F A+L R
Sbjct: 431 -MDGFFIAKLKR 441
>gi|225865846|ref|YP_002751224.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
03BB102]
gi|225787241|gb|ACO27458.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
03BB102]
Length = 444
Score = 198 bits (503), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 132/387 (34%), Positives = 213/387 (55%), Gaps = 22/387 (5%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+D +D+ L+T+IV GTI+ R LD+ + +E + +LR+ Y+++ LD
Sbjct: 36 IDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLK-----KKVEAWVRVLLRLSLYQMIYLDR 90
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A + E V +AK G +VNG+LR + +P E D + A+AT
Sbjct: 91 VPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSI----QREGVPSVD-EIKDPVERLAIAT 145
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
SHPVW+V+ WT G E A K+ N P + R N K +T + + L ++
Sbjct: 146 --SHPVWLVQEWTAEYGLETAEKMCEVNMLPPVPTARVNVDK-ITVEEAITLLASEGIEA 202
Query: 286 PH-ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 344
+LS D+ I+++ G NV K+G ++QDES+ L+ ++P G I+D CA
Sbjct: 203 KRGDLS---DDAIQIEKG--NVAHTDAFKKGFLSIQDESSMLIARALEPDEGDVILDSCA 257
Query: 345 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-S 403
APGGKT ++A L G G V ++D++ ++R++ + A+ + +V T D R ++ +
Sbjct: 258 APGGKTTHIAERLKGTGQVMSLDLHAHKVRLIKQQAERLGLENV-ETKALDARKVQEHFA 316
Query: 404 TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463
DK+L+DAPCSG GV+ ++ D++ + D E L ++Q +L+ + L+K GG LVY
Sbjct: 317 NETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSERLSMIQFAILEKIAPLLKQGGRLVY 376
Query: 464 STCSIDPEENEERVEAFLLRHPEFSID 490
STC+I+ ENE+ +E FL HPEF D
Sbjct: 377 STCTIEKIENEQVIERFLQEHPEFEWD 403
>gi|23098962|ref|NP_692428.1| hypothetical protein OB1507 [Oceanobacillus iheyensis HTE831]
gi|22777190|dbj|BAC13463.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
Length = 448
Score = 198 bits (503), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 125/430 (29%), Positives = 236/430 (54%), Gaps = 40/430 (9%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
+ + L+++D RL+T++V G+++ + LD+ + +K ++ + +LR+ FY++
Sbjct: 31 LKQRQLNEKDERLLTEVVYGSLQHQMTLDYYLSKFVKSKK---KLDIWVQSLLRMSFYQM 87
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKL-EGNDRAQ 219
+ L+ +P +AV+ E+V +AK G + VNG+LR L +P+L E D +
Sbjct: 88 IYLEKVPDHAVIHESVEIAKQRGHKGISSFVNGVLRSL------QRQGVPELTEIKDPIE 141
Query: 220 ARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLN 279
A+ T SHP W+V+RW++ G E + N S+R + +R D++ +L
Sbjct: 142 RIAIET--SHPEWLVKRWSEMYGMETTANMCRNNLEHHPLSIRIQPLR-TSREDVMEELK 198
Query: 280 LLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSI 339
++ S+ + I ++ G N+ + LLK+G +QD+S+ LV ++ +P ++
Sbjct: 199 QSGIEC--RASIFSSQGIIIEKG--NIFRTNLLKDGKITIQDQSSMLVGEMLAVEPEMNV 254
Query: 340 VDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF 399
+D C+APGGK ++A + +G ++A D++ ++++++E A Q++S++ D R
Sbjct: 255 LDSCSAPGGKVTHVAEKMLDKGTIHAFDLHAKKIKLIDEKATTLQLSSILAQ-KGDARKL 313
Query: 400 ADNSTVKC-DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPG 458
AD + D++++DAPCSGLGV++ + ++++ + ED++ L +Q ++L+ L+K
Sbjct: 314 ADKYEKESFDRIVVDAPCSGLGVINGKPEIKYEKSEEDIQRLAKIQQDILNEVIPLLKEN 373
Query: 459 GVLVYSTCSIDPEENEERVEAFLLRHPEFSID-------PAD------------GLVPSD 499
G+L+YSTC++D EEN + V L H + SID P + L P D
Sbjct: 374 GLLIYSTCTVDTEENNQVVRQVLKNHQDISIDLSFRDELPVEIQEAPGWSEEGLQLFPQD 433
Query: 500 FVTKHGFFFS 509
F T GFF +
Sbjct: 434 FHTD-GFFLT 442
>gi|254735904|ref|ZP_05193610.1| ribosomal RNA small subunit methyltransferase B [Bacillus anthracis
str. Western North America USA6153]
Length = 444
Score = 197 bits (502), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 133/387 (34%), Positives = 212/387 (54%), Gaps = 22/387 (5%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+D +D+ L+T+IV GTI+ R LD+ + +E + +LR+ Y+++ LD
Sbjct: 36 IDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLK-----KKVEAWVRVLLRLSLYQMIYLDR 90
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A + E V +AK G +VNG+LR + +P E D + A+AT
Sbjct: 91 VPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSI----QREGVPSVD-EIKDPVERLAIAT 145
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
SHPVW V+ WT G E A K+ N P + R N K +T + + L ++
Sbjct: 146 --SHPVWFVQEWTAEYGLETAEKMCEVNMLPPVPTARVNVDK-ITVEEAITLLASEGIEA 202
Query: 286 PH-ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 344
+LS D+ I+++ G NV K+G ++QDES+ LV ++P G I+D CA
Sbjct: 203 KRGDLS---DDAIQIEKG--NVAHTDAFKKGFLSIQDESSMLVARALEPDEGDVILDSCA 257
Query: 345 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-S 403
APGGKT ++A L G G V ++D++ ++R++ + A+ + +V T D R ++ +
Sbjct: 258 APGGKTTHIAERLKGTGQVMSLDLHAHKVRLIKQQAERLGLENV-ETKALDARKVQEHFA 316
Query: 404 TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463
DK+L+DAPCSG GV+ ++ D++ + D E L ++Q +L+ + L+K GG LVY
Sbjct: 317 NETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSERLSMIQFAILEKIAPLLKQGGRLVY 376
Query: 464 STCSIDPEENEERVEAFLLRHPEFSID 490
STC+I+ ENE+ +E FL HPEF D
Sbjct: 377 STCTIEKIENEQVIERFLQEHPEFEWD 403
>gi|404329182|ref|ZP_10969630.1| RNA-binding protein Sun [Sporolactobacillus vineae DSM 21990 =
SL153]
Length = 448
Score = 197 bits (502), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 127/391 (32%), Positives = 213/391 (54%), Gaps = 21/391 (5%)
Query: 104 TKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVK 163
+ L+ RD LVT +V G ++ R LD+++ +K ++ LL R+ Y+ +
Sbjct: 34 SASLNGRDKALVTTLVYGVLQHSRTLDYILAFYVSGKKPDLWVDLLL----RLSLYQKIY 89
Query: 164 LD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARA 222
LD +P +A+V+E R+A G VN +LR+ L++ +P L + +++
Sbjct: 90 LDRIPDHAIVNEAARIAGKRGHHGIVGFVNAVLRRF--LREG----VPDLN-RIQPESKR 142
Query: 223 LATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLK 282
L+ YSHP W++ W + A+K+ +N P +R N R R +L L
Sbjct: 143 LSIQYSHPEWLLSLWAGQWDSDTAVKIAESDNQAPPSFVRVN-RLHTDRHELEAILEQDG 201
Query: 283 LQV-PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVD 341
+Q P LS + + +K G ++ GL +QDES+ LV V P+ G +++D
Sbjct: 202 MQTEPGRLS---PDCLEIKGG--HIAGTRAFATGLMTIQDESSMLVADAVAPEKGMTVLD 256
Query: 342 CCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD 401
CA PGGKT ++ + G + A+D+++ + ++++++AK V + IRT D R
Sbjct: 257 ACAGPGGKTTHLGERMQNSGQIIALDLHEHKTKLIDQSAKRLGVTN-IRTKAMDAREAGS 315
Query: 402 N-STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGV 460
S D++LLD PCSGLGV+ ++ ++RW++ ED+ L +Q+ LL+ S LV+ GG
Sbjct: 316 FFSPASFDRLLLDVPCSGLGVIRRKPEIRWDKSPEDLGHLAEIQNALLERTSTLVRSGGW 375
Query: 461 LVYSTCSIDPEENEERVEAFLLRHPEFSIDP 491
LVYSTC+++ +EN+ R+ FL RHPEF +P
Sbjct: 376 LVYSTCTVNRDENDRRLTGFLSRHPEFEWEP 406
>gi|384175316|ref|YP_005556701.1| ribosomal RNA small subunit methyltransferase B [Bacillus subtilis
subsp. subtilis str. RO-NN-1]
gi|349594540|gb|AEP90727.1| ribosomal RNA small subunit methyltransferase B [Bacillus subtilis
subsp. subtilis str. RO-NN-1]
Length = 447
Score = 197 bits (502), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 118/391 (30%), Positives = 219/391 (56%), Gaps = 18/391 (4%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
++ +L D+D L+T++V GT++ + LD+++ + + ++P ++Q+LR+ Y++
Sbjct: 32 IKSNELSDQDRGLLTELVYGTLQNKIALDYMLKPFINKPQ---KVKPWVIQLLRLSLYQM 88
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
L+ +P A + E V +AK+ G + VNG+LR + +P + +
Sbjct: 89 EYLEKIPDRAAIHEAVEIAKIRGHKGIASFVNGVLRSI------QREGVPSFDAIEDP-V 141
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
R LAT SHP W+V+ W G + A K+ + P +LR N K RA+L+ Q+
Sbjct: 142 RRLATETSHPEWLVKEWADAYGFDAAEKICRIHLIPPKQTLRVNQMKA-DRAELLDQMAA 200
Query: 281 LKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIV 340
++V E ++ +++ G + + G ++QDES+ LV +DP+P ++++
Sbjct: 201 EGIEV--EKGDLAEDAVKLLKG--TIAGTHFFQNGEVSIQDESSMLVARALDPKPDETVL 256
Query: 341 DCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 400
D CAAPGGK+ ++A + +G V ++D++K +++++ E A + ++I D R
Sbjct: 257 DACAAPGGKSAHIAELMKNKGSVMSLDLHKHKVKLIKEAADRLGL-TIIHAETMDARKAG 315
Query: 401 DN-STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGG 459
+ + D++L+DAPCSG GV+ ++ D+++ ++ +D L +Q +L + LVK GG
Sbjct: 316 ETFENEQFDRILVDAPCSGFGVIRRKPDMKYTKKPDDSARLAEIQLSILREIAPLVKKGG 375
Query: 460 VLVYSTCSIDPEENEERVEAFLLRHPEFSID 490
LVYSTC++D EN+E + AF+ HP+F D
Sbjct: 376 TLVYSTCTMDRTENDEVIHAFIQEHPDFEPD 406
>gi|253682518|ref|ZP_04863315.1| ribosomal RNA small subunit methyltransferase B [Clostridium
botulinum D str. 1873]
gi|253562230|gb|EES91682.1| ribosomal RNA small subunit methyltransferase B [Clostridium
botulinum D str. 1873]
Length = 443
Score = 197 bits (502), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 132/432 (30%), Positives = 230/432 (53%), Gaps = 25/432 (5%)
Query: 101 GFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYE 160
+ ++++D L+T+IV GTI+++ +D + L + +K S++ +L ILRI Y+
Sbjct: 29 SLNNQKINEKDKGLITEIVYGTIKYKYTIDAI--LNTYLKKGTKSVDSYILNILRITIYQ 86
Query: 161 IVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQ 219
I LD +P +A V+E V +AK LVNG+LR N L K+ N +
Sbjct: 87 IKYLDKIPNFAAVNEAVNIAKKHKSIRESKLVNGVLR-------NYLRNLDKVYYNKNSV 139
Query: 220 ARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLN 279
L YS W+V+ + +E K++ N P+ ++R N+ K T D
Sbjct: 140 VERLCFEYSCEKWLVKMFINQYNEEITEKILNGLNERPAVTVRVNNLK--TDYDEAFN-K 196
Query: 280 LLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSI 339
L + E E I + G +++ L ++G VQDESA LV A +D + G +
Sbjct: 197 LEEYGYSIEEGYVCPEAIIINKG-KSIESNPLFEDGKVTVQDESAMLVAATMDIKEGSLV 255
Query: 340 VDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF 399
+D C+APGGKT +++ ++ G V A DI++ +L ++ + AK +N+ I D F
Sbjct: 256 LDLCSAPGGKTTHISEIMNNTGKVMAFDIHENKLSLVKDNAKRLGINN-IECSKLDASKF 314
Query: 400 ADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGG 459
+ D VL+D PCSGLG++ K+ ++++ + +E ++++ +Q E++ A+ VK GG
Sbjct: 315 NEKLKETADAVLIDVPCSGLGIIRKKPEIKYTKNMESVKDIVNIQKEIMKNAARYVKVGG 374
Query: 460 VLVYSTCSIDPEENEERVEAFLLRHPEFSIDP-----ADGLVPSDFVTKHGFFFSDPIKH 514
L+YSTC+I+ +ENE+ ++ F+ PE++++P D ++ ++ T P K+
Sbjct: 375 TLLYSTCTINKKENEQNIDWFIRNFPEYTVEPIFYGEMDNIIYNENRTVTIL----PNKY 430
Query: 515 SLDGAFAARLVR 526
+DG F A+L R
Sbjct: 431 -MDGFFIAKLKR 441
>gi|229086418|ref|ZP_04218594.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
Rock3-44]
gi|228696934|gb|EEL49743.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
Rock3-44]
Length = 431
Score = 197 bits (502), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 139/431 (32%), Positives = 230/431 (53%), Gaps = 50/431 (11%)
Query: 69 MRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRY 128
M+++ GA+++LL +E++ ++D +D+ L+T+IV GTI+ R
Sbjct: 1 MQVEKSGAYSNLLLN----------NLIEKS------EIDRKDIGLLTEIVYGTIQRRDT 44
Query: 129 LDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGA 187
LD+ + +E + +LR+ Y+++ LD +P AV+ E V +AK G
Sbjct: 45 LDYYLQPFLK-----KKVEAWVKVLLRLSLYQMIYLDRVPERAVIHEAVEIAKRRGHKGI 99
Query: 188 GNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAI 247
+VNG+LR + +P +E + + LA SHP W+V+ W G E A
Sbjct: 100 AGMVNGVLRSI------QREGVPSVE-EIQDPVKRLAVAMSHPEWLVQEWVSAYGLETAQ 152
Query: 248 KLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLK---LQVPH-ELSLHLDEFIRVKTGL 303
K+ N P + R N V +A + ++LL+ +Q + +LS ++ I+++ G
Sbjct: 153 KMCEVNMLPPVSAARVN----VDKATVEEAISLLENEGIQAKYGDLS---EDAIQIEKG- 204
Query: 304 QNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLV 363
NV ++G ++QDES+ LV + P G ++D CAAPGGKT ++A L G G V
Sbjct: 205 -NVAHTEAFQKGFLSIQDESSMLVARALAPAEGDKVLDSCAAPGGKTTHIAERLKGTGQV 263
Query: 364 YAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT----FADNSTVKCDKVLLDAPCSGL 419
++D++ ++R++ + AK + +V T D R FA+ S DK+L+DAPCSG
Sbjct: 264 MSLDLHPHKVRLIQQQAKRLGLENV-ETKALDARKVEEHFANES---FDKILVDAPCSGF 319
Query: 420 GVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEA 479
GV+ ++ D++ + D E L +Q +L+ + L+K GG LVYSTC+I+ ENE+ +E
Sbjct: 320 GVIRRKPDIKLGKEKGDSERLSTIQLSILEKVAPLLKTGGRLVYSTCTIEKIENEQVIEQ 379
Query: 480 FLLRHPEFSID 490
FL HPEF D
Sbjct: 380 FLQEHPEFEWD 390
>gi|409349310|ref|ZP_11232802.1| RNA methyltransferase Sun [Lactobacillus equicursoris CIP 110162]
gi|407878247|emb|CCK84860.1| RNA methyltransferase Sun [Lactobacillus equicursoris CIP 110162]
Length = 438
Score = 197 bits (502), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 141/417 (33%), Positives = 218/417 (52%), Gaps = 27/417 (6%)
Query: 113 RLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAV 171
RL T++V GT++ + YLD+ + L + + +EPLLL + Y+++ LD +P AV
Sbjct: 42 RLATNLVYGTLQNKLYLDYQLKGLVKAKLKEAYIEPLLL----MSIYQLLFLDKVPARAV 97
Query: 172 VDENVRLAKVALRPGAGN--LVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSH 229
+DE +LAK +P + LVNGILR LPK + D L+ YS
Sbjct: 98 LDEANKLAKAFGKPKSSGYRLVNGILRSF----QRRGTILPKEDDPDY-----LSVKYSE 148
Query: 230 PVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHEL 289
P W+ G + A K+M N+ +R ++ V +V L P E
Sbjct: 149 PKWLADYLVANWGPKRAEKIMASFNTHAKNEIRISNL--VKEGQVVYDLKKAHFN-PVES 205
Query: 290 SLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGK 349
+L + + G +I KEG VQDE+A LV D + ++D CAAPGGK
Sbjct: 206 ALADRSYSLSRGG---IILTDFFKEGQVTVQDEAASLVAEAFDFTGNERVLDSCAAPGGK 262
Query: 350 TLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVKCD 408
T+ +A +S +G V A+DI++ +LR++ E A+ QV ++T D R S + D
Sbjct: 263 TIQLAEKVS-EGQVTALDIHEKKLRLVRENAQRMQVADRVKTKALDARKAGGYFSKGEFD 321
Query: 409 KVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSI 468
K+L+DAPCSGLG+L ++ ++R++++ D+ L +Q ++L+ + L+K GG LVYSTCSI
Sbjct: 322 KILIDAPCSGLGLLRRKPEIRYSKQPADITNLAQIQLDILNEVAGLLKSGGELVYSTCSI 381
Query: 469 DPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARLV 525
EENEE V+ FL HP+F + P + + G P ++ DG F A+
Sbjct: 382 SVEENEENVQKFLKAHPDFVLKP---FKTAKVKAEQGMLKILPDSYNSDGFFIAKFT 435
>gi|423378296|ref|ZP_17355580.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG1O-2]
gi|423441404|ref|ZP_17418310.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG4X2-1]
gi|423464478|ref|ZP_17441246.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG6O-1]
gi|423533820|ref|ZP_17510238.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
HuB2-9]
gi|423540911|ref|ZP_17517302.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
HuB4-10]
gi|423547149|ref|ZP_17523507.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
HuB5-5]
gi|423623059|ref|ZP_17598837.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VD148]
gi|401172099|gb|EJQ79320.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
HuB4-10]
gi|401178870|gb|EJQ86043.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
HuB5-5]
gi|401259832|gb|EJR66006.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VD148]
gi|401636562|gb|EJS54316.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG1O-2]
gi|402418065|gb|EJV50365.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG4X2-1]
gi|402420745|gb|EJV53016.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG6O-1]
gi|402464039|gb|EJV95739.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
HuB2-9]
Length = 444
Score = 197 bits (502), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 132/388 (34%), Positives = 212/388 (54%), Gaps = 24/388 (6%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+D +D+ L+T+IV GTI+ R LD+ + +E + +LR+ Y+++ LD
Sbjct: 36 IDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLK-----KKVEAWVRVLLRLSLYQMIYLDR 90
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKL-EGNDRAQARALA 224
+P A + E V +AK G +VNG+LR + +P L E D + A+A
Sbjct: 91 VPERAAIHEAVEIAKRRGHKGISGMVNGVLRSI------QREGVPSLDEIKDPVERLAIA 144
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQ 284
T SHPVW+V+ W G E A K+ N P + R N V + + + LL +
Sbjct: 145 T--SHPVWLVQDWASEYGLETAEKMCEVNMLPPVPTARVN----VDKVTVEEAIELLASE 198
Query: 285 VPHELSLHL-DEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCC 343
S L D+ I+++ G NV K+G ++QDES+ LV +DP G++++D C
Sbjct: 199 GIEAKSGDLSDDAIQIERG--NVAHTEAFKKGFLSIQDESSMLVARALDPNEGETVLDSC 256
Query: 344 AAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN- 402
AAPGGKT ++A L G G V ++D++ ++R++ + A+ + + I T D R ++
Sbjct: 257 AAPGGKTTHIAERLKGTGKVMSLDLHAHKVRLIKQQAERLGLEN-IETKALDARKVQEHF 315
Query: 403 STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLV 462
+ DK+L+DAPCSG GV+ ++ D++ + D E L +Q +L+ + L+K GG LV
Sbjct: 316 ANETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSERLSTIQLAILEKIAPLLKQGGRLV 375
Query: 463 YSTCSIDPEENEERVEAFLLRHPEFSID 490
YSTC+I+ ENE+ ++ FL HPEF D
Sbjct: 376 YSTCTIEKIENEQVIDKFLKEHPEFEWD 403
>gi|78186474|ref|YP_374517.1| Fmu, rRNA SAM-dependent methyltransferase [Chlorobium luteolum DSM
273]
gi|78166376|gb|ABB23474.1| Fmu, rRNA SAM-dependent methyltransferase [Chlorobium luteolum DSM
273]
Length = 442
Score = 197 bits (502), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 144/427 (33%), Positives = 218/427 (51%), Gaps = 33/427 (7%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLIC-LLCHDEKTFSSMEPLLLQILRIGFYEIVKLD 165
L D L T + G +R R LD +I HD + S P +L ILR+G ++++ LD
Sbjct: 35 LKGPDRALATALTSGVLRQRLQLDFIIAKFYSHDIQKAS---PAVLNILRLGVWQLLFLD 91
Query: 166 -MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P +A V+E VRLA+ L N +LRK+ + L L D + + L+
Sbjct: 92 RVPRWAAVNECVRLARRYKGERMSKLTNAVLRKISPETVHLDLWL-----KDASLSERLS 146
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQ 284
++SHP +VRRW G++ ++ ++N P F +R N KG K
Sbjct: 147 VLHSHPEPLVRRWIGNYGEQRTESMLRYDNEHPLFGIRHNPLKGTN----------AKGA 196
Query: 285 VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 344
E ++ + LL++GL +VQ+ + L V ++DPQP ++D CA
Sbjct: 197 EGEESGWQESGIPGIRLAADFHLFEPLLRQGLASVQNPTQALAVLLLDPQPDWKVLDLCA 256
Query: 345 APGGKTLYMASCLSGQGLVYAIDINKG---RLRILNETAKLHQVNSVIRTIHADLRTFAD 401
APGGK + A + +G + A+D R++ L +T + S+I D R F
Sbjct: 257 APGGKAAHAAELMGNRGEIIALDRYPQKTLRIQALADTLGI----SIIEARTGDAREF-- 310
Query: 402 NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVL 461
+ D +L+DAPC+G GVL +RA+LRW E + EL LQ+E+L A+ L+ GG+L
Sbjct: 311 TPPFQPDAILVDAPCTGTGVLGRRAELRWKTGPEKLRELSGLQEEILRHAAGLLAEGGLL 370
Query: 462 VYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFV---TKHGFFFSDP-IKHSLD 517
+YSTCS++PEEN+ +VEAFL +HP F I+ A G VP F T G + P + D
Sbjct: 371 LYSTCSVEPEENQLQVEAFLQQHPAFRIEQATGKVPEPFCLERTPEGGILTLPGARPGFD 430
Query: 518 GAFAARL 524
G +A L
Sbjct: 431 GGYAVLL 437
>gi|229129141|ref|ZP_04258114.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BDRD-Cer4]
gi|228654378|gb|EEL10243.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BDRD-Cer4]
Length = 429
Score = 197 bits (501), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 130/387 (33%), Positives = 211/387 (54%), Gaps = 22/387 (5%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+D +D+ L+T+IV GTI+ R LD+ + +E + +LR+ Y+++ LD
Sbjct: 21 IDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLK-----KKVEAWVRVLLRLSLYQMIYLDR 75
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A + E V +AK G +VNG+LR + +P E D + A+ T
Sbjct: 76 VPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSI----QREGVPSVD-EIKDPVERLAITT 130
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQ- 284
SHPVW+V+ WT G E A K+ N P + R N V + + + LL +
Sbjct: 131 --SHPVWLVQEWTSEYGLETAEKMCEVNMLPPVPTARVN----VDKVTVEEAIELLASEG 184
Query: 285 VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 344
+ +L D+ I+++ G NV K+G ++QDES+ LV ++P G +++D CA
Sbjct: 185 IEAKLGDLSDDAIQIERG--NVAHTEAFKKGFLSIQDESSMLVARALEPNTGDAVLDSCA 242
Query: 345 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-S 403
APGGKT ++A L G G V ++D++ ++R++ + A+ + +V T D R ++ +
Sbjct: 243 APGGKTTHIAERLKGTGKVMSLDLHAHKVRLIKQQAERLGLENV-ETKALDARKVQEHFA 301
Query: 404 TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463
DK+L+DAPCSG GV+ ++ D++ + D E L +Q +L+ + L+K GG LVY
Sbjct: 302 NETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSERLSTIQIAILEKIAPLLKQGGRLVY 361
Query: 464 STCSIDPEENEERVEAFLLRHPEFSID 490
STC+I+ ENE+ +E FL HPEF D
Sbjct: 362 STCTIEKIENEQVIEKFLQEHPEFEWD 388
>gi|359457510|ref|ZP_09246073.1| 16S rRNA methyltransferase B [Acaryochloris sp. CCMEE 5410]
Length = 443
Score = 197 bits (501), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 146/429 (34%), Positives = 227/429 (52%), Gaps = 23/429 (5%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
K + D D RL+T+++ G++R +R LD LI +K P L +L +G Y++ L
Sbjct: 32 KTIADADRRLLTELLYGSVRRQRTLDALIDQFA--KKPAHQQPPDLRTLLHLGLYQLRFL 89
Query: 165 D-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARAL 223
D +P A + V LAK G VNG+LR+ N + PL +L + + L
Sbjct: 90 DHIPDAAAIFTTVELAKQNKLSGLSGFVNGLLRQYTRAAANLNDPL-ELPPDP---IQRL 145
Query: 224 ATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQL---NL 280
+YS+P W+V+ W LG EE KL + N P LR N K R + QL +
Sbjct: 146 GILYSYPDWIVQVWHDQLGSEETKKLCDYCNQPPHIDLRINPLK-TDRESVRSQLAAAGV 204
Query: 281 LKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIV 340
+PH L + +R+K + Q +EGL VQ+ SA LV +++PQPG +
Sbjct: 205 TTTPLPH-----LPQALRIKGKSGPIPQLPGFQEGLWTVQEASAQLVGHLLNPQPGAIAL 259
Query: 341 DCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 400
D CAAPGGKT +MA + +G ++A D RLR L + + ++++V + D R
Sbjct: 260 DVCAAPGGKTTHMAELMENRGEIWACDRTPSRLRKLKQNLQRLEIDAV-QIWTGDSRQLP 318
Query: 401 DNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGV 460
D + D VL+DAPCSGLG L + AD RW + +++++L LQ +LL ++ VK GG
Sbjct: 319 DQIPLS-DYVLVDAPCSGLGTLHRHADARWRQTPDNIQDLSTLQLDLLLNSARWVKSGGT 377
Query: 461 LVYSTCSIDPEENEERVEAFLLRHPEF--SIDPADGLVPSDFVTKHGFFFSDPIKHSLDG 518
L+YSTC++ P+ENE+ ++ FL + P++ + D + S+ + + P + +DG
Sbjct: 378 LLYSTCTLHPQENEKIIDQFLAQMPQWQAQLPIIDWVSTSEPQSNLKIW---PHQKKMDG 434
Query: 519 AFAARLVRA 527
F A L +A
Sbjct: 435 FFMAILQQA 443
>gi|52141623|ref|YP_085206.1| sun protein [Bacillus cereus E33L]
gi|51975092|gb|AAU16642.1| sun protein [Bacillus cereus E33L]
Length = 444
Score = 197 bits (501), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 132/387 (34%), Positives = 212/387 (54%), Gaps = 22/387 (5%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+D +D+ L+T+IV GTI+ R LD+ + +E + +LR+ Y+++ LD
Sbjct: 36 IDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLK-----KKVEAWVRVLLRLSLYQMIYLDR 90
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A + E V +AK G +VNG+LR + +P E D + A+AT
Sbjct: 91 VPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSI----QREGVPSVD-EIKDPVERLAIAT 145
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
SHPVW+V+ WT G E A K+ N P + R N K +T + + L ++
Sbjct: 146 --SHPVWLVQEWTSEYGLETAEKMCEVNMLPPVPTARVNVDK-ITVEEAITLLASEGIEA 202
Query: 286 PH-ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 344
+LS D+ I+++ G NV K+G ++QDES+ LV ++P G ++D CA
Sbjct: 203 KRGDLS---DDAIQIEKG--NVAHTDAFKKGFLSIQDESSMLVARALEPDEGDVVLDSCA 257
Query: 345 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-S 403
APGGKT ++A L G G V ++D++ ++R++ + A+ + +V T D R ++ +
Sbjct: 258 APGGKTTHIAERLKGTGQVMSLDLHAHKVRLIKQQAERLGLENV-ETKALDARKVQEHFA 316
Query: 404 TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463
DK+L+DAPCSG GV+ ++ D++ + D E L +Q +L+ + L+K GG LVY
Sbjct: 317 NETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSERLSTIQFAILEKIAPLLKQGGRLVY 376
Query: 464 STCSIDPEENEERVEAFLLRHPEFSID 490
STC+I+ ENE+ +E FL HPEF D
Sbjct: 377 STCTIEKIENEQVIERFLQEHPEFEWD 403
>gi|225871064|ref|YP_002747011.1| ribosomal RNA small subunit methyltransferase [Streptococcus equi
subsp. equi 4047]
gi|225700468|emb|CAW94888.1| putative ribosomal RNA small subunit methyltransferase
[Streptococcus equi subsp. equi 4047]
Length = 442
Score = 197 bits (501), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 144/430 (33%), Positives = 227/430 (52%), Gaps = 41/430 (9%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L D+D LVT+IV GTI + L+ L H + ++ + +L + Y++ LD
Sbjct: 42 LSDKDKALVTEIVYGTISRKITLE---WYLAHYIEDRDRLDKWVYYLLMLSLYQLAYLDK 98
Query: 166 MPPYAVVDENVRLAKV-ALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P +A+V++ V LAK A GA LVN +LR+L + PLP ++ R + + A
Sbjct: 99 VPAHAIVNDAVNLAKARAHGRGADKLVNAVLRQL------TNKPLPDIKSIKR-KNKYYA 151
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQ 284
YS PVW+V++ G+E A+ +M SL SR + DL +L+ +K
Sbjct: 152 VAYSVPVWLVKKLIDQFGEERAVAIME--------SLFVRSRASIRVTDLT-KLDEIKQA 202
Query: 285 VPHELSLHLDEFIRVKTGLQ----NVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIV 340
E SL +TGL N + G +QDE++ LV +D Q + I+
Sbjct: 203 TGSEQSL------LARTGLTKRAGNFAASSYFINGDITIQDETSQLVAPTLDIQGQEMIL 256
Query: 341 DCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT-- 398
D C+APGGKT ++AS L+ G V A+D+ + +L ++NE AK V I T D R
Sbjct: 257 DACSAPGGKTAHIASYLTS-GKVVALDLYEHKLALVNENAKRLGVADRIETKVLDAREVH 315
Query: 399 --FADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVK 456
FA NS DK+L+DAPCSG+G++ ++ D+++N+ +D ++L+ +Q E+L + ++
Sbjct: 316 KHFAKNS---FDKILVDAPCSGIGLIRRKPDIKYNKEGQDFQQLQEIQLEILSSVCQTLR 372
Query: 457 PGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSL 516
GG++ YSTC+I EEN + ++ FL RHP F +D V K G P ++
Sbjct: 373 KGGIITYSTCTIFDEENFQVIDKFLQRHPNFE-QVTLKHAQADIV-KDGCLMITPEQYQT 430
Query: 517 DGAFAARLVR 526
DG F ++ R
Sbjct: 431 DGFFIGQVRR 440
>gi|417315470|ref|ZP_12102146.1| 16S rRNA methyltransferase B [Listeria monocytogenes J1816]
gi|328466174|gb|EGF37331.1| 16S rRNA methyltransferase B [Listeria monocytogenes J1816]
Length = 399
Score = 197 bits (501), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 133/417 (31%), Positives = 230/417 (55%), Gaps = 30/417 (7%)
Query: 115 VTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEP--LLLQILRIGFYEIVKLD-MPPYAV 171
+T++V GT + + LD+ + F + EP + +LR+ Y++ LD +P +A+
Sbjct: 1 MTELVYGTTQRKITLDYYLA-------PFLNKEPDNWVKNLLRMSVYQLTFLDKVPEHAI 53
Query: 172 VDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEG-NDRAQARALATIYSHP 230
++E +AK G VNG+LR ++ +P ++ D Q A+ T S P
Sbjct: 54 LNEAGDIAKDLGHQGVTKFVNGVLRNVI------RKGVPSIDAIKDPVQKIAVET--SLP 105
Query: 231 VWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELS 290
W+ +RW G E+ ++ + P S+R N + + L+ +LN + V +
Sbjct: 106 EWLAKRWADQYGIEKLREIGLAFLVAPHQSIRVNQTE-IPTEQLIKELNDQGITVTR--N 162
Query: 291 LHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKT 350
++E + V+ G +V + K+G C++QDES+ L + + +++D CAAPGGKT
Sbjct: 163 EFIEEALLVEKG--SVAETKAYKDGKCSIQDESSMLAAYALQLEDNLTVLDACAAPGGKT 220
Query: 351 LYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKC-DK 409
++A + G G+V+A+DI++ + +++++ AK Q+ + IRT H D RT + + D+
Sbjct: 221 THIAEKMHGTGMVHALDIHEKKTKLIDQAAKRLQLLN-IRTAHLDARTASTMFEPETFDR 279
Query: 410 VLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSID 469
+L+DAPCSG GVL ++ D+++ + +D+ +L +Q +LD S LVK G+LVYSTC+ID
Sbjct: 280 ILVDAPCSGFGVLRRKPDIKYAKTEKDIHKLAEIQLAILDDVSQLVKENGILVYSTCTID 339
Query: 470 PEENEERVEAFLLRHPEFSIDPADGLVPSDF--VTKHGFFFSDPIKHSLDGAFAARL 524
EENE + AFL +HPEF+++P ++P + K F P DG F + L
Sbjct: 340 KEENETVLRAFLEKHPEFTLEPV--VLPEKLAQIKKDDFIQLLPTDIGSDGFFVSSL 394
>gi|444917580|ref|ZP_21237675.1| Ribosomal RNA small subunit methyltransferase B [Cystobacter fuscus
DSM 2262]
gi|444710921|gb|ELW51882.1| Ribosomal RNA small subunit methyltransferase B [Cystobacter fuscus
DSM 2262]
Length = 439
Score = 197 bits (501), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 149/430 (34%), Positives = 222/430 (51%), Gaps = 35/430 (8%)
Query: 108 DDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMP 167
D RD L+T++V GT R LD+ I ++ ++E +L LR+G Y++ +P
Sbjct: 36 DPRDAGLITELVYGTTRRELALDYAITRFA--DRKLDALEDKVLAALRVGVYQLFYTRVP 93
Query: 168 PYAVVDENVR-LAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATI 226
A V E V+ L V L AG N ILRKL L + PLP +D A+ L+
Sbjct: 94 ARAAVAETVQALKDVGLARAAG-FANAILRKLAALP---AQPLPP--EDDLAEF--LSVR 145
Query: 227 YSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV- 285
SHP W+V RW + G+E A ++V NN P+ +RAN R VTR L+ QL L+
Sbjct: 146 ESHPRWLVERWLRQFGRERAEAMLVANNQTPAVVIRAN-RAKVTRDALLAQLRETGLEAR 204
Query: 286 PHELS---LHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 342
P +S + L RV ++V EGL VQDE+A LV D ++D
Sbjct: 205 PTPVSPVGIILPPVGRV----EDVYG---YAEGLWQVQDEAAQLVGVYGDIPDTARVLDA 257
Query: 343 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLR-ILNETAKLHQVNSVIRTIHADLRTFAD 401
CAAPGGK + A +V A D++ ++R IL+E +L + +H + +
Sbjct: 258 CAAPGGKACHQAET----HVVVATDLHANKMRKILSEARRLGLTERLRAEVHDATEPWPE 313
Query: 402 NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVL 461
+ + ++DAPCSGLG L + +LR+ R+ EDM L +LQ +L+ V PGG+L
Sbjct: 314 -AWGEFHAFVVDAPCSGLGTLRRHPELRYRRKPEDMARLAVLQRRILENCQEAVPPGGLL 372
Query: 462 VYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVT---KHGFFFSDPIKHSLDG 518
VY+ C+ +P+E +++VE FL HPE++ +P VP + V + + P DG
Sbjct: 373 VYAVCTPEPQEGQDQVEMFLRSHPEWTAEPP---VPREGVKLPLTQAYLRTLPGPEGWDG 429
Query: 519 AFAARLVRAF 528
FAARL + +
Sbjct: 430 FFAARLRKLY 439
>gi|228954142|ref|ZP_04116170.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
thuringiensis serovar kurstaki str. T03a001]
gi|229071363|ref|ZP_04204586.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
F65185]
gi|229081120|ref|ZP_04213630.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
Rock4-2]
gi|228702164|gb|EEL54640.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
Rock4-2]
gi|228711817|gb|EEL63769.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
F65185]
gi|228805462|gb|EEM52053.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
thuringiensis serovar kurstaki str. T03a001]
Length = 429
Score = 197 bits (501), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 131/387 (33%), Positives = 210/387 (54%), Gaps = 22/387 (5%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+D +D+ L+T+IV GTI+ R LD+ + +E + +LR+ Y+++ LD
Sbjct: 21 IDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLK-----KKVEAWVRVLLRLSLYQMIYLDR 75
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A + E V +AK G +VNG+LR + +P E D + A+ T
Sbjct: 76 VPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSI----QREGVPSVD-EIKDPVERLAITT 130
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
SHPVW+V+ WT G E A K+ N P + R N V + + + LL +
Sbjct: 131 --SHPVWLVQEWTSEYGLETAEKMCEVNMLPPVPTARVN----VDKVTVEEAIELLASEG 184
Query: 286 PHELSLHL-DEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 344
S L D+ I+++ G NV K+G ++QDES+ LV ++P G +++D CA
Sbjct: 185 IEAKSGDLSDDAIQIERG--NVAHTEAFKKGFLSIQDESSMLVARALEPNTGDAVLDSCA 242
Query: 345 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-S 403
APGGKT ++A L G G V ++D++ ++R++ + A+ + +V T D R ++ +
Sbjct: 243 APGGKTTHIAERLKGTGKVMSLDLHAHKVRLIKQQAERLGLENV-ETKALDARKVQEHFA 301
Query: 404 TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463
DK+L+DAPCSG GV+ ++ D++ + D E L +Q +L+ + L+K GG LVY
Sbjct: 302 NETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSERLSTIQIAILEKIAPLLKQGGRLVY 361
Query: 464 STCSIDPEENEERVEAFLLRHPEFSID 490
STC+I+ ENE+ +E FL HPEF D
Sbjct: 362 STCTIEKIENEQVIEKFLQEHPEFEWD 388
>gi|30021953|ref|NP_833584.1| sun protein [Bacillus cereus ATCC 14579]
gi|29897509|gb|AAP10785.1| 16S rRNA m(5)C 967 methyltransferase [Bacillus cereus ATCC 14579]
Length = 444
Score = 197 bits (501), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 130/387 (33%), Positives = 211/387 (54%), Gaps = 22/387 (5%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+D +D+ L+T+IV GTI+ R LD+ + +E + +LR+ Y+++ LD
Sbjct: 36 IDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLK-----KKVEAWVRVLLRLSLYQMIYLDR 90
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A + E V +AK G +VNG+LR + +P E D + A+ T
Sbjct: 91 VPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSI----QREGVPSVD-EIKDPVERLAITT 145
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQ- 284
SHPVW+V+ WT G E A K+ N P + R N V + + + LL +
Sbjct: 146 --SHPVWLVQEWTSEYGLETAEKMCEVNMLPPVPTARVN----VDKVTVEEAIELLASEG 199
Query: 285 VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 344
+ +L D+ I+++ G NV K+G ++QDES+ LV ++P G +++D CA
Sbjct: 200 IEAKLGDLSDDAIQIERG--NVAHTEAFKKGFLSIQDESSMLVARALEPNTGDAVLDSCA 257
Query: 345 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-S 403
APGGKT ++A L G G V ++D++ ++R++ + A+ + +V T D R ++ +
Sbjct: 258 APGGKTTHIAERLKGTGKVMSLDLHAHKVRLIKQQAERLGLENV-ETKALDARKVQEHFA 316
Query: 404 TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463
DK+L+DAPCSG GV+ ++ D++ + D E L +Q +L+ + L+K GG LVY
Sbjct: 317 NETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSERLSTIQIAILEKIAPLLKQGGRLVY 376
Query: 464 STCSIDPEENEERVEAFLLRHPEFSID 490
STC+I+ ENE+ +E FL HPEF D
Sbjct: 377 STCTIEKIENEQVIEKFLQEHPEFEWD 403
>gi|398304097|ref|ZP_10507683.1| 16S rRNA methyltransferase B [Bacillus vallismortis DV1-F-3]
Length = 447
Score = 197 bits (501), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 119/391 (30%), Positives = 217/391 (55%), Gaps = 18/391 (4%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
++ +L D+D L+T++V GT++ + LD+++ + + ++P ++Q+LR+ Y++
Sbjct: 32 MKSNELSDQDRGLLTELVYGTLQNKIALDYMLKPFINKPQ---KVKPWVIQLLRLSLYQM 88
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
L+ +P A + E V +AK+ G + VNG+LR + +P + +
Sbjct: 89 EYLEKIPDRAAIHEAVEIAKIRGHKGIASFVNGVLRSI------QREGVPSFDAIEDP-V 141
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
R LAT SHP W+V+ W + A K+ + P +LR N K RA+L+ Q+
Sbjct: 142 RRLATETSHPEWLVKEWVDAYEFDAAEKICRIHLIPPKQTLRVNQMKA-DRAELLDQMAA 200
Query: 281 LKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIV 340
++V E D+ +++ G + G ++QDES+ LV +DP+PG++++
Sbjct: 201 DGIEV--EKGDLADDAVKLLKG--TIAGTHFFLNGEVSIQDESSMLVARALDPKPGETVL 256
Query: 341 DCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 400
D CAAPGGK+ ++ + +G + ++D++K +++++ E A + ++I D R
Sbjct: 257 DACAAPGGKSAHIGELMENKGSISSLDLHKHKVKLIKEAADRLGL-TIIDAQEMDARKAG 315
Query: 401 DN-STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGG 459
+ + D+VL+DAPCSG GV+ ++ D+++ ++ +D L +Q +L + LVK GG
Sbjct: 316 ETFENEQFDRVLVDAPCSGFGVIRRKPDMKYTKKPDDSARLAEIQLSILREIAPLVKKGG 375
Query: 460 VLVYSTCSIDPEENEERVEAFLLRHPEFSID 490
LVYSTC++D ENEE + AF+ HP+F D
Sbjct: 376 TLVYSTCTMDRTENEEVIHAFIQEHPDFEPD 406
>gi|228902369|ref|ZP_04066525.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
thuringiensis IBL 4222]
gi|228857267|gb|EEN01771.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
thuringiensis IBL 4222]
Length = 429
Score = 197 bits (501), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 131/387 (33%), Positives = 212/387 (54%), Gaps = 22/387 (5%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+D +D+ L+T+IV GTI+ R LD+ + +E + +LR+ Y+++ LD
Sbjct: 21 IDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLK-----KKVEAWVRVLLRLSLYQMIYLDR 75
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A + E V +AK G +VNG+LR + +P ++ R LA
Sbjct: 76 VPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSI------QREGVPSVDEIKDPVER-LAI 128
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
SHPVW+V+ WT G E A K+ N P + R N K VT + + L ++
Sbjct: 129 AMSHPVWLVQEWTSAYGLETAEKMCEVNMLPPVPTARVNVDK-VTVEEAIELLASEGIEA 187
Query: 286 PH-ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 344
+LS D+ I+++ G NV K+G ++QDES+ LV ++P G++++D CA
Sbjct: 188 KRGDLS---DDAIQIERG--NVAHTEAFKKGFLSIQDESSMLVARALEPNEGETVLDSCA 242
Query: 345 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-S 403
APGGKT ++A L G G V ++D++ ++R++ + A+ + +V T D R ++ S
Sbjct: 243 APGGKTTHIAERLKGTGKVMSLDLHAHKVRLIKQQAERLGLENV-ETKALDARKVQEHFS 301
Query: 404 TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463
DK+L+DAPCSG GV+ ++ D++ + D E L +Q +L+ + L+K GG LVY
Sbjct: 302 NETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSERLSTIQLAILEKIAPLLKQGGRLVY 361
Query: 464 STCSIDPEENEERVEAFLLRHPEFSID 490
STC+I+ ENE+ ++ FL HPEF D
Sbjct: 362 STCTIEKIENEQVIDKFLKEHPEFEWD 388
>gi|423612082|ref|ZP_17587943.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VD107]
gi|401247089|gb|EJR53433.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VD107]
Length = 444
Score = 197 bits (500), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 135/390 (34%), Positives = 213/390 (54%), Gaps = 28/390 (7%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+D +D+ L+T+IV GTI+ R LD+ + +E + +LR+ Y+++ LD
Sbjct: 36 IDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLR-----KKVEAWVRVLLRLSLYQMLYLDR 90
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A + E V +AK G +VNG+LR + +P LE + R LA
Sbjct: 91 VPERAAIHEAVEIAKRRGHKGISGMVNGVLRSI------QREGVPSLEEIENPVER-LAI 143
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
SHP+W+V+ W G E A K+ N P + R N K VT + V L ++
Sbjct: 144 ATSHPMWLVQEWASEYGLETAEKMCEVNMLPPVPTARVNVDK-VTVEEAVALLADEGIEA 202
Query: 286 PH-ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 344
ELS ++ I+++ G NV K+G ++QDES+ LV ++P G +++D CA
Sbjct: 203 KRGELS---EDAIQIERG--NVAHTEAFKKGFLSIQDESSMLVARALEPNKGDAVLDSCA 257
Query: 345 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT----FA 400
APGGKT ++A L G G V ++D++ ++R++ + AK + +V T+ D R FA
Sbjct: 258 APGGKTTHIAERLDGTGKVMSLDLHAHKVRLIEQQAKRLGLENV-ETMALDARKVQEHFA 316
Query: 401 DNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGV 460
+ S DK+L+DAPCSG GV+ ++ D++ + D E L +Q +L+ + L+K GG
Sbjct: 317 NES---FDKILVDAPCSGFGVIRRKPDIKLGKDKGDSERLSTIQLAILEKIAPLLKQGGR 373
Query: 461 LVYSTCSIDPEENEERVEAFLLRHPEFSID 490
LVYSTC+I+ ENE+ ++ FL HPEF D
Sbjct: 374 LVYSTCTIEKIENEQVIKQFLQEHPEFEWD 403
>gi|406669288|ref|ZP_11076568.1| ribosomal RNA small subunit methyltransferase B [Facklamia ignava
CCUG 37419]
gi|405584085|gb|EKB58011.1| ribosomal RNA small subunit methyltransferase B [Facklamia ignava
CCUG 37419]
Length = 453
Score = 197 bits (500), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 136/448 (30%), Positives = 236/448 (52%), Gaps = 35/448 (7%)
Query: 90 DNEMGYVERTL-GFRT-KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSME 147
+NE GY + F T + D RD L+T +V G ++ R LD + L ++K ++
Sbjct: 27 ENEGGYSNVLIDAFMTDSEFDSRDKALLTRVVYGVLQHRMTLDFSLDSLLQNKK----VD 82
Query: 148 PLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNS 206
+ +LR+ Y++ LD +P +AVV+E V +AK G G VN +LR+ ++ ++S
Sbjct: 83 LWVKTLLRLSIYQLCYLDRIPAHAVVNEAVLIAKTNGHAGLGKFVNWVLREF--MRQSSS 140
Query: 207 LPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSR 266
+ + ++E L+ YS P WMV + Y E+ ++ N P + R N +
Sbjct: 141 V-VEEIED----PVERLSIEYSLPKWMVEYFQSYRTSEKLEAMLSSLNETPKLTARVNLK 195
Query: 267 KGVTRADLVMQLNLLKLQV------PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQ 320
+ + R + + +L + P + LH + V+Q+ L ++GL +Q
Sbjct: 196 R-MDREEAIARLKEQGIDAEASTLSPAGIILHSPQ----------VLQSSLFQDGLITIQ 244
Query: 321 DESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRL-RILNET 379
DES+ LV V D Q + I+D C APGGK ++AS L+ G + A+DI+ ++ ++
Sbjct: 245 DESSMLVAPVGDIQGDEQILDACCAPGGKATHIASLLTD-GHLTALDISADKMNKVAQHM 303
Query: 380 AKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEE 439
+++ ++ V + D F D + LD PCSGLG++ ++ ++++ +++ D++
Sbjct: 304 ERMNLIDKVNLKV-TDALQFHPKKDTFYDIIYLDVPCSGLGIMRRKPEIKYTKKITDIQA 362
Query: 440 LKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGL-VPS 498
L +Q + L+ + VKPGG L+YSTC++ EENE+ VE F+ HP+F IDP VPS
Sbjct: 363 LAQIQAKFLNHFAPYVKPGGKLIYSTCTLSYEENEKNVEQFIKAHPQFEIDPIQPTEVPS 422
Query: 499 DFVTKHGFFFSDPIKHSLDGAFAARLVR 526
D + + G+ P ++ DG F R+ R
Sbjct: 423 DLIEQPGWVRIWPDQYHTDGFFICRMKR 450
>gi|228960081|ref|ZP_04121745.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
thuringiensis serovar pakistani str. T13001]
gi|229047552|ref|ZP_04193142.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
AH676]
gi|229146436|ref|ZP_04274807.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BDRD-ST24]
gi|229152064|ref|ZP_04280259.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
m1550]
gi|229192034|ref|ZP_04319004.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
ATCC 10876]
gi|228591585|gb|EEK49434.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
ATCC 10876]
gi|228631413|gb|EEK88047.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
m1550]
gi|228637069|gb|EEK93528.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BDRD-ST24]
gi|228723799|gb|EEL75154.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
AH676]
gi|228799597|gb|EEM46550.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
thuringiensis serovar pakistani str. T13001]
Length = 429
Score = 197 bits (500), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 132/387 (34%), Positives = 212/387 (54%), Gaps = 22/387 (5%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+D +D+ L+T+IV GTI+ R LD+ + +E + +LR+ Y+++ LD
Sbjct: 21 IDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLK-----KKVEAWVRVLLRLSLYQMIYLDR 75
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A + E V +AK G +VNG+LR + +P E D + A+ T
Sbjct: 76 VPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSI----QREGVPSVD-EIKDPVERLAITT 130
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
SHPVW+V+ WT G E A K+ N P + R N K VT + + L ++
Sbjct: 131 --SHPVWLVQEWTSEYGLETAEKMCEVNMLPPVPTARVNVDK-VTVEEAIELLASEGIEA 187
Query: 286 PH-ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 344
+LS D+ I+++ G NV K+G ++QDES+ LV ++P G +++D CA
Sbjct: 188 KRGDLS---DDAIQIERG--NVAHTEAFKKGFLSIQDESSMLVARALEPNTGDAVLDSCA 242
Query: 345 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-S 403
APGGKT ++A L G G V ++D++ ++R++ + A+ + +V T D R ++ +
Sbjct: 243 APGGKTTHIAERLKGTGKVMSLDLHAHKVRLIKQQAERLGLENV-ETKALDARKVQEHFA 301
Query: 404 TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463
DK+L+DAPCSG GV+ ++ D++ + D E L +Q +L+ + L+K GG LVY
Sbjct: 302 NETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSERLSTIQIAILEKIAPLLKQGGRLVY 361
Query: 464 STCSIDPEENEERVEAFLLRHPEFSID 490
STC+I+ ENE+ +E FL HPEF D
Sbjct: 362 STCTIEKIENEQVIEKFLQEHPEFEWD 388
>gi|299821751|ref|ZP_07053639.1| ribosomal RNA small subunit methyltransferase B [Listeria grayi DSM
20601]
gi|299817416|gb|EFI84652.1| ribosomal RNA small subunit methyltransferase B [Listeria grayi DSM
20601]
Length = 445
Score = 197 bits (500), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 136/433 (31%), Positives = 234/433 (54%), Gaps = 39/433 (9%)
Query: 101 GFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEP--LLLQILRIGF 158
+ L+ D L+T++V GT++ R LD+ + +TF +P +L++LR+
Sbjct: 32 ALKKTKLEALDRNLLTELVYGTLQRRLTLDYYL-------QTFLKKQPEDWVLELLRMSV 84
Query: 159 YEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDR 217
Y++V LD +P +A++ E +AK G VNG+LR L+ +P + D
Sbjct: 85 YQLVYLDKVPEHAILHEAGEIAKQRSHQGVTKFVNGVLRNLI----RQGIP-AITDIADP 139
Query: 218 AQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQ 277
+ A+ T S P+W+ RRW K G + ++ + P ++R N R R +
Sbjct: 140 VEQVAIET--SLPLWLARRWEKQFGLTQLREIGLAFLVPPHQTIRVN-RLEQPREQTAKE 196
Query: 278 LNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQ 337
L + ++ S +LDE + V+ G V Q L ++G+ ++QDES+ L + +
Sbjct: 197 LGQIDIETTP--SPYLDEALIVEKG--TVAQTRLYQKGIISIQDESSMLPAYALQLEEQM 252
Query: 338 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETA-KLHQVNSVIRTIHADL 396
+++D CAAPGGKT ++A ++G G+VYA+DI++ + +++ + A +L +N IRT D
Sbjct: 253 TVLDACAAPGGKTTHIAEKMNGTGIVYALDIHEKKTKLIEQAADRLGLMN--IRTKAYDA 310
Query: 397 RTFADNSTVKC-DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLV 455
R ++ + D++L+DAPCSG GVL ++ D+++++ D++ L +Q E+L+ S L+
Sbjct: 311 RKASEVFEPEMFDRILVDAPCSGFGVLRRKPDIKYSKTENDIQRLAAIQLEILEEVSQLL 370
Query: 456 KPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPAD------GLVPSDF-------VT 502
K G+LVYSTC+ID EEN ++ FL HPEF ++ L+ D+ +
Sbjct: 371 KENGILVYSTCTIDKEENATVLKTFLANHPEFQLERVQVPKAVAELLTEDYLELLPTAIG 430
Query: 503 KHGFFFSDPIKHS 515
GFF S K+S
Sbjct: 431 SDGFFVSSIRKNS 443
>gi|423483455|ref|ZP_17460145.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG6X1-2]
gi|401141006|gb|EJQ48561.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG6X1-2]
Length = 444
Score = 197 bits (500), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 136/391 (34%), Positives = 214/391 (54%), Gaps = 30/391 (7%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+D +D+ L+T+IV GTI+ R LD+ + +E + +LR+ Y+++ LD
Sbjct: 36 IDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLR-----KKVEAWVRVLLRLSLYQMIYLDR 90
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKL-EGNDRAQARALA 224
+P A + E V +AK G +VNG+LR + +P L E D + A+A
Sbjct: 91 VPERAAIHEAVEIAKRRGHKGISGMVNGVLRSI------QREGIPSLDEIKDPVERLAIA 144
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQ 284
T SHP+W+V+ W G E A K+ N P + R N K VT + V L ++
Sbjct: 145 T--SHPMWLVQEWASEYGLETAEKMCEVNMLPPVPTARVNVDK-VTVEEAVALLADEGIE 201
Query: 285 VPH-ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCC 343
ELS ++ I+++ G NV K G ++QDES+ LV ++P G +++D C
Sbjct: 202 AKRGELS---EDAIQIERG--NVAHTEAFKNGFLSIQDESSMLVARALEPNKGDAVLDSC 256
Query: 344 AAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT----F 399
AAPGGKT ++A L G G V ++D++ ++R++ + AK + +V T+ D R F
Sbjct: 257 AAPGGKTTHIAERLDGTGKVMSLDLHAHKVRLIEQQAKRLGLENV-ETMALDARKVQEHF 315
Query: 400 ADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGG 459
A+ S DK+L+DAPCSG GV+ ++ D++ + D E L +Q +L+ + L+K GG
Sbjct: 316 ANES---FDKILVDAPCSGFGVIRRKPDIKLGKDKGDSERLSTIQLAILEKIAPLLKQGG 372
Query: 460 VLVYSTCSIDPEENEERVEAFLLRHPEFSID 490
LVYSTC+I+ ENE+ ++ FL HPEF D
Sbjct: 373 RLVYSTCTIEKIENEQVIKQFLQEHPEFEWD 403
>gi|365159358|ref|ZP_09355539.1| ribosomal RNA small subunit methyltransferase B [Bacillus sp.
7_6_55CFAA_CT2]
gi|363625356|gb|EHL76397.1| ribosomal RNA small subunit methyltransferase B [Bacillus sp.
7_6_55CFAA_CT2]
Length = 444
Score = 197 bits (500), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 131/387 (33%), Positives = 210/387 (54%), Gaps = 22/387 (5%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+D +D+ L+T+IV GTI+ R LD+ + +E + +LR+ Y+++ LD
Sbjct: 36 IDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLK-----KKVEAWVRVLLRLSLYQMIYLDR 90
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A + E V +AK G +VNG+LR + +P E D + A+ T
Sbjct: 91 VPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSI----QREGVPSVD-EIKDPVERLAITT 145
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
SHPVW+V+ WT G E A K+ N P + R N V + + + LL +
Sbjct: 146 --SHPVWLVQEWTSEYGLETAEKMCEVNMLPPVPTARVN----VDKVTVEEAIELLASEG 199
Query: 286 PHELSLHL-DEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 344
S L D+ I+++ G NV K+G ++QDES+ LV ++P G +++D CA
Sbjct: 200 IEAKSGDLSDDAIQIERG--NVAHTEAFKKGFLSIQDESSMLVARALEPNTGDAVLDSCA 257
Query: 345 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-S 403
APGGKT ++A L G G V ++D++ ++R++ + A+ + +V T D R ++ +
Sbjct: 258 APGGKTTHIAERLKGTGKVMSLDLHAHKVRLIKQQAERLGLENV-ETKALDARKVQEHFA 316
Query: 404 TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463
DK+L+DAPCSG GV+ ++ D++ + D E L +Q +L+ + L+K GG LVY
Sbjct: 317 NETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSERLSTIQIAILEKIAPLLKQGGRLVY 376
Query: 464 STCSIDPEENEERVEAFLLRHPEFSID 490
STC+I+ ENE+ +E FL HPEF D
Sbjct: 377 STCTIEKIENEQVIEKFLQEHPEFEWD 403
>gi|423426001|ref|ZP_17403032.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG3X2-2]
gi|423437320|ref|ZP_17414301.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG4X12-1]
gi|423503457|ref|ZP_17480049.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
HD73]
gi|449090808|ref|YP_007423249.1| ribosomal RNA small subunit methyltransferase B [Bacillus
thuringiensis serovar kurstaki str. HD73]
gi|401110748|gb|EJQ18647.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG3X2-2]
gi|401120475|gb|EJQ28271.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG4X12-1]
gi|402459678|gb|EJV91415.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
HD73]
gi|449024565|gb|AGE79728.1| ribosomal RNA small subunit methyltransferase B [Bacillus
thuringiensis serovar kurstaki str. HD73]
Length = 444
Score = 197 bits (500), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 131/387 (33%), Positives = 210/387 (54%), Gaps = 22/387 (5%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+D +D+ L+T+IV GTI+ R LD+ + +E + +LR+ Y+++ LD
Sbjct: 36 IDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLK-----KKVEAWVRVLLRLSLYQMIYLDR 90
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A + E V +AK G +VNG+LR + +P E D + A+ T
Sbjct: 91 VPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSI----QREGVPSVD-EIKDPVERLAITT 145
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
SHPVW+V+ WT G E A K+ N P + R N V + + + LL +
Sbjct: 146 --SHPVWLVQEWTSEYGLETAEKMCEVNMLPPVPTARVN----VDKVTVEEAIELLASEG 199
Query: 286 PHELSLHL-DEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 344
S L D+ I+++ G NV K+G ++QDES+ LV ++P G +++D CA
Sbjct: 200 IEAKSGDLSDDAIQIERG--NVAHTEAFKKGFLSIQDESSMLVARALEPNTGDAVLDSCA 257
Query: 345 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-S 403
APGGKT ++A L G G V ++D++ ++R++ + A+ + +V T D R ++ +
Sbjct: 258 APGGKTTHIAERLKGTGKVMSLDLHAHKVRLIKQQAERLGLENV-ETKALDARKVQEHFA 316
Query: 404 TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463
DK+L+DAPCSG GV+ ++ D++ + D E L +Q +L+ + L+K GG LVY
Sbjct: 317 NETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSERLSTIQIAILEKIAPLLKQGGRLVY 376
Query: 464 STCSIDPEENEERVEAFLLRHPEFSID 490
STC+I+ ENE+ +E FL HPEF D
Sbjct: 377 STCTIEKIENEQVIEKFLQEHPEFEWD 403
>gi|148241673|ref|YP_001226830.1| ribosomal RNA small subunit methyltransferase B [Synechococcus sp.
RCC307]
gi|147849983|emb|CAK27477.1| Ribosomal RNA small subunit methyltransferase B [Synechococcus sp.
RCC307]
Length = 454
Score = 197 bits (500), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 160/453 (35%), Positives = 228/453 (50%), Gaps = 40/453 (8%)
Query: 59 PHRAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDI 118
P R V A R++ GA+ADL +ER L + L RD L T++
Sbjct: 30 PPRLV-AWRVLEAVGDGAYADL--------------ALEREL--KRSKLSPRDRGLATEL 72
Query: 119 VGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVR 177
G IR RR LD + LL + + P L +L +G +I+ +D +P A V V
Sbjct: 73 AYGAIRQRRRLDGWLDLL--GKVPAAKQPPRLRWLLHVGLQQILLMDRVPASAAVSTAVE 130
Query: 178 LAKVALRPGAGNLVNGILRKLV-LLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRR 236
LAK +VNG+LR V ++ SLP+P Q R LA +S P W+V
Sbjct: 131 LAKRERLQRLAPVVNGVLRAAVRAVEAGESLPVPS-----DPQKR-LALEHSLPDWLVAE 184
Query: 237 WTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKL-QVPHELSLHLDE 295
+G E L +N P LR N R +R L+ L + L ++P L+L
Sbjct: 185 LWGQIGPERTEALAAASNRIPPLDLRCN-RLRSSREALLENLPAVALAELPDGLTLT--- 240
Query: 296 FIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMAS 355
+ G + Q EG VQD +A + ++DP+PGQ ++D CAAPGGKT ++A
Sbjct: 241 ---SRPG--PLPQLAGFSEGQWCVQDRAAQRIAPLLDPKPGQRVLDACAAPGGKTTHIAE 295
Query: 356 CLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAP 415
+ QG V A+D+ RL+ ++ A+ + S IRT AD D D+VLLD P
Sbjct: 296 LMGDQGEVVAVDVAPRRLQQVSANAERLGL-SCIRTEAADATDLTDWEAESFDRVLLDVP 354
Query: 416 CSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEE 475
CSGLG L++ AD RWN + + +EEL LQ +LL+ + L+KP G LVY+TC++ P EN
Sbjct: 355 CSGLGTLARHADARWNLKPDGIEELVGLQHQLLEQGARLLKPDGRLVYATCTVHPAENTG 414
Query: 476 RVEAFLLRHPEFSI-DPADGLVPSDFVTKHGFF 507
VEAF+ +P++ +P L P D GFF
Sbjct: 415 VVEAFVEENPDWQFSEPPMQLWP-DPQGGDGFF 446
>gi|423635364|ref|ZP_17611017.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VD156]
gi|401278115|gb|EJR84051.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VD156]
Length = 444
Score = 196 bits (499), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 132/387 (34%), Positives = 212/387 (54%), Gaps = 22/387 (5%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+D +D+ L+T+IV GTI+ R LD+ + +E + +LR+ Y+++ LD
Sbjct: 36 IDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLK-----KKVEAWVRVLLRLSLYQMIYLDR 90
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A + E V +AK G +VNG+LR + +P E D + A+ T
Sbjct: 91 VPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSI----QREGVPSVD-EIKDPVERLAITT 145
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
SHPVW+V+ WT G E A K+ N P + R N K VT + + L ++
Sbjct: 146 --SHPVWLVQEWTSEYGLETAEKMCEVNMLPPVPTARVNVDK-VTVEEAIELLASEGIEA 202
Query: 286 PH-ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 344
+LS D+ I+++ G NV K+G ++QDES+ LV ++P G +++D CA
Sbjct: 203 KRGDLS---DDAIQIERG--NVAHTEAFKKGFLSIQDESSMLVARALEPNTGDAVLDSCA 257
Query: 345 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-S 403
APGGKT ++A L G G V ++D++ ++R++ + A+ + +V T D R ++ +
Sbjct: 258 APGGKTTHIAERLKGTGKVMSLDLHAHKVRLIKQQAERLGLENV-ETKALDARKVQEHFA 316
Query: 404 TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463
DK+L+DAPCSG GV+ ++ D++ + D E L +Q +L+ + L+K GG LVY
Sbjct: 317 NETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSERLSTIQIAILEKIAPLLKQGGRLVY 376
Query: 464 STCSIDPEENEERVEAFLLRHPEFSID 490
STC+I+ ENE+ +E FL HPEF D
Sbjct: 377 STCTIEKIENEQVIEKFLQEHPEFEWD 403
>gi|218899018|ref|YP_002447429.1| sun protein [Bacillus cereus G9842]
gi|402564793|ref|YP_006607517.1| 16S rRNA methyltransferase B [Bacillus thuringiensis HD-771]
gi|423359099|ref|ZP_17336602.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VD022]
gi|423561729|ref|ZP_17538005.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
MSX-A1]
gi|218546015|gb|ACK98409.1| sun protein [Bacillus cereus G9842]
gi|401084971|gb|EJP93217.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VD022]
gi|401201986|gb|EJR08851.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
MSX-A1]
gi|401793445|gb|AFQ19484.1| 16S rRNA methyltransferase B [Bacillus thuringiensis HD-771]
Length = 444
Score = 196 bits (499), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 131/387 (33%), Positives = 212/387 (54%), Gaps = 22/387 (5%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+D +D+ L+T+IV GTI+ R LD+ + +E + +LR+ Y+++ LD
Sbjct: 36 IDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLK-----KKVEAWVRVLLRLSLYQMIYLDR 90
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A + E V +AK G +VNG+LR + +P ++ R LA
Sbjct: 91 VPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSI------QREGVPSVDEIKDPVER-LAI 143
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
SHPVW+V+ WT G E A K+ N P + R N K VT + + L ++
Sbjct: 144 AMSHPVWLVQEWTSAYGLETAEKMCEVNMLPPVPTARVNVDK-VTVEEAIELLASEGIEA 202
Query: 286 PH-ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 344
+LS D+ I+++ G NV K+G ++QDES+ LV ++P G++++D CA
Sbjct: 203 KRGDLS---DDAIQIERG--NVAHTEAFKKGFLSIQDESSMLVARALEPNEGETVLDSCA 257
Query: 345 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-S 403
APGGKT ++A L G G V ++D++ ++R++ + A+ + +V T D R ++ S
Sbjct: 258 APGGKTTHIAERLKGTGKVMSLDLHAHKVRLIKQQAERLGLENV-ETKALDARKVQEHFS 316
Query: 404 TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463
DK+L+DAPCSG GV+ ++ D++ + D E L +Q +L+ + L+K GG LVY
Sbjct: 317 NETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSERLSTIQLAILEKIAPLLKQGGRLVY 376
Query: 464 STCSIDPEENEERVEAFLLRHPEFSID 490
STC+I+ ENE+ ++ FL HPEF D
Sbjct: 377 STCTIEKIENEQVIDKFLKEHPEFEWD 403
>gi|228966815|ref|ZP_04127859.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
thuringiensis serovar sotto str. T04001]
gi|228792914|gb|EEM40472.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
thuringiensis serovar sotto str. T04001]
Length = 429
Score = 196 bits (499), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 131/387 (33%), Positives = 212/387 (54%), Gaps = 22/387 (5%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+D +D+ L+T+IV GTI+ R LD+ + +E + +LR+ Y+++ LD
Sbjct: 21 IDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLK-----KKVEAWVRVLLRLSLYQMIYLDR 75
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A + E V +AK G +VNG+LR + +P ++ R LA
Sbjct: 76 VPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSI------QREGVPSVDEIKDPVER-LAI 128
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
SHPVW+V+ WT G E A K+ N P + R N K VT + + L ++
Sbjct: 129 AMSHPVWLVQEWTSAYGLETAEKMCEVNMLPPVPTARVNVDK-VTVEEAIELLASEGIEA 187
Query: 286 PH-ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 344
+LS D+ I+++ G NV K+G ++QDES+ LV ++P G++++D CA
Sbjct: 188 KRGDLS---DDAIQIERG--NVAHTEAFKKGFLSIQDESSMLVARALEPNEGETVLDSCA 242
Query: 345 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-S 403
APGGKT ++A L G G V ++D++ ++R++ + A+ + +V T D R ++ S
Sbjct: 243 APGGKTTHIAERLKGTGKVMSLDLHAHKVRLIKQQAERLGLENV-ETKALDARKVQEHFS 301
Query: 404 TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463
DK+L+DAPCSG GV+ ++ D++ + D E L +Q +L+ + L+K GG LVY
Sbjct: 302 NETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSERLSTIQLAILEKIAPLLKQGGRLVY 361
Query: 464 STCSIDPEENEERVEAFLLRHPEFSID 490
STC+I+ ENE+ ++ FL HPEF D
Sbjct: 362 STCTIEKIENEQVIDKFLKEHPEFEWD 388
>gi|434376969|ref|YP_006611613.1| 16S rRNA methyltransferase B [Bacillus thuringiensis HD-789]
gi|401875526|gb|AFQ27693.1| 16S rRNA methyltransferase B [Bacillus thuringiensis HD-789]
Length = 444
Score = 196 bits (499), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 131/387 (33%), Positives = 212/387 (54%), Gaps = 22/387 (5%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+D +D+ L+T+IV GTI+ R LD+ + +E + +LR+ Y+++ LD
Sbjct: 36 IDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLK-----KKVEAWVRVLLRLSLYQMIYLDR 90
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A + E V +AK G +VNG+LR + +P ++ R LA
Sbjct: 91 VPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSI------QREGVPSVDEIKDPVER-LAI 143
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
SHPVW+V+ WT G E A K+ N P + R N K VT + + L ++
Sbjct: 144 AMSHPVWLVQEWTSAYGLETAEKMCEVNMLPPVPTARVNVDK-VTVEEAIELLASEGIEA 202
Query: 286 PH-ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 344
+LS D+ I+++ G NV K+G ++QDES+ LV ++P G++++D CA
Sbjct: 203 KRGDLS---DDAIQIERG--NVAHTEAFKKGFLSIQDESSMLVARALEPNEGETVLDSCA 257
Query: 345 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-S 403
APGGKT ++A L G G V ++D++ ++R++ + A+ + +V T D R ++ S
Sbjct: 258 APGGKTTHIAERLKGTGKVMSLDLHAHKVRLIKQQAERLGLENV-ETKALDARKVQEHFS 316
Query: 404 TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463
DK+L+DAPCSG GV+ ++ D++ + D E L +Q +L+ + L+K GG LVY
Sbjct: 317 NETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSERLSTIQLAILEKIAPLLKQGGRLVY 376
Query: 464 STCSIDPEENEERVEAFLLRHPEFSID 490
STC+I+ ENE+ ++ FL HPEF D
Sbjct: 377 STCTIEKIENEQVIDKFLKEHPEFEWD 403
>gi|423448370|ref|ZP_17425249.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG5O-1]
gi|401128964|gb|EJQ36647.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG5O-1]
Length = 444
Score = 196 bits (499), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 132/388 (34%), Positives = 211/388 (54%), Gaps = 24/388 (6%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+D +D+ L+T+IV GTI+ R LD+ + +E + +LR+ Y+++ LD
Sbjct: 36 IDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLK-----KKVEAWVRVLLRLSLYQMIYLDR 90
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKL-EGNDRAQARALA 224
+P A + E V +AK G +VNG+LR + +P L E D + A+A
Sbjct: 91 VPERAAIHEAVEIAKRRGHKGISGMVNGVLRSI------QREGVPSLDEIKDPVERLAIA 144
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQ 284
T SHPVW+V+ W G E A K+ N P + R N V + + + LL +
Sbjct: 145 T--SHPVWLVQDWASEYGLETAEKMCEVNMLPPVPTARVN----VDKVTVEEAIELLASE 198
Query: 285 VPHELSLHL-DEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCC 343
S L D+ I+++ G NV K+G ++QDES+ LV +DP G++++D C
Sbjct: 199 GIEAKSGDLSDDAIQIERG--NVAHTEAFKKGFLSIQDESSMLVARALDPNEGETVLDSC 256
Query: 344 AAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN- 402
AAPGGKT ++A L G G V ++D++ ++R++ + A+ + + I T D R ++
Sbjct: 257 AAPGGKTTHIAERLKGTGKVMSLDLHAHKVRLIKQQAERLGLEN-IETKALDARKVQEHF 315
Query: 403 STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLV 462
+ DK+L+DAPCSG GV+ ++ D++ + D E L +Q +L+ + L+K GG LV
Sbjct: 316 ANETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSERLSTIQLAILEKIAPLLKQGGRLV 375
Query: 463 YSTCSIDPEENEERVEAFLLRHPEFSID 490
YSTC+I+ ENE+ + FL HPEF D
Sbjct: 376 YSTCTIEKIENEQVINKFLKEHPEFEWD 403
>gi|228940953|ref|ZP_04103512.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
thuringiensis serovar berliner ATCC 10792]
gi|228973882|ref|ZP_04134458.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
thuringiensis serovar thuringiensis str. T01001]
gi|228980472|ref|ZP_04140782.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
thuringiensis Bt407]
gi|228779292|gb|EEM27549.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
thuringiensis Bt407]
gi|228785907|gb|EEM33910.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
thuringiensis serovar thuringiensis str. T01001]
gi|228818789|gb|EEM64855.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
thuringiensis serovar berliner ATCC 10792]
Length = 429
Score = 196 bits (499), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 132/387 (34%), Positives = 213/387 (55%), Gaps = 22/387 (5%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+D +D+ L+T+IV GTI+ R LD+ + +E + +LR+ Y+++ LD
Sbjct: 21 IDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLK-----KKVEAWVRVLLRLSLYQMIYLDR 75
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A + E V +AK G +VNG+LR + +P E D + A+AT
Sbjct: 76 VPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSI----QREGVPSVD-EIKDPVERLAIAT 130
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
SHPVW+V+ WT G E A K+ N P + R N K VT + + L ++
Sbjct: 131 --SHPVWLVQEWTSAYGLETAEKMCEVNMLPPVPTARVNVDK-VTVEEAIELLASEGIEA 187
Query: 286 PH-ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 344
+LS D+ I+++ G NV K+G ++QDES+ LV ++P G +++D CA
Sbjct: 188 KRGDLS---DDAIQIERG--NVAHTEAFKKGFLSIQDESSMLVARALEPNTGDAVLDSCA 242
Query: 345 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-S 403
APGGKT ++A L G G V ++D++ ++R++ + A+ + +V T D R ++ +
Sbjct: 243 APGGKTTHIAERLKGTGKVMSLDLHAHKVRLIKQQAERLGLENV-ETKALDARKVQEHFA 301
Query: 404 TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463
DK+L+DAPCSG GV+ ++ D++ + D E L +Q +L+ + L+K GG LVY
Sbjct: 302 NETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSERLSTIQLAILEKIAPLLKQGGRLVY 361
Query: 464 STCSIDPEENEERVEAFLLRHPEFSID 490
STC+I+ ENE+ ++ FL HPEF D
Sbjct: 362 STCTIEKIENEQVIDKFLKEHPEFEWD 388
>gi|206971310|ref|ZP_03232261.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
AH1134]
gi|218233863|ref|YP_002368666.1| sun protein [Bacillus cereus B4264]
gi|296504360|ref|YP_003666060.1| sun protein [Bacillus thuringiensis BMB171]
gi|423412330|ref|ZP_17389450.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG3O-2]
gi|423431885|ref|ZP_17408889.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG4O-1]
gi|423585726|ref|ZP_17561813.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VD045]
gi|423628958|ref|ZP_17604707.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VD154]
gi|423641054|ref|ZP_17616672.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VD166]
gi|423649728|ref|ZP_17625298.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VD169]
gi|423656724|ref|ZP_17632023.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VD200]
gi|206734082|gb|EDZ51253.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
AH1134]
gi|218161820|gb|ACK61812.1| sun protein [Bacillus cereus B4264]
gi|296325412|gb|ADH08340.1| sun protein [Bacillus thuringiensis BMB171]
gi|401104398|gb|EJQ12375.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG3O-2]
gi|401116641|gb|EJQ24479.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG4O-1]
gi|401233072|gb|EJR39568.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VD045]
gi|401268503|gb|EJR74551.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VD154]
gi|401280115|gb|EJR86037.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VD166]
gi|401283008|gb|EJR88905.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VD169]
gi|401290465|gb|EJR96159.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VD200]
Length = 444
Score = 196 bits (499), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 132/387 (34%), Positives = 212/387 (54%), Gaps = 22/387 (5%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+D +D+ L+T+IV GTI+ R LD+ + +E + +LR+ Y+++ LD
Sbjct: 36 IDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLK-----KKVEAWVRVLLRLSLYQMIYLDR 90
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A + E V +AK G +VNG+LR + +P E D + A+ T
Sbjct: 91 VPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSI----QREGVPSVD-EIKDPVERLAITT 145
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
SHPVW+V+ WT G E A K+ N P + R N K VT + + L ++
Sbjct: 146 --SHPVWLVQEWTSEYGLETAEKMCEVNMLPPVPTARVNVDK-VTVEEAIELLASEGIEA 202
Query: 286 PH-ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 344
+LS D+ I+++ G NV K+G ++QDES+ LV ++P G +++D CA
Sbjct: 203 KRGDLS---DDAIQIERG--NVAHTEAFKKGFLSIQDESSMLVARALEPNTGDAVLDSCA 257
Query: 345 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-S 403
APGGKT ++A L G G V ++D++ ++R++ + A+ + +V T D R ++ +
Sbjct: 258 APGGKTTHIAERLKGTGKVMSLDLHAHKVRLIKQQAERLGLENV-ETKALDARKVQEHFA 316
Query: 404 TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463
DK+L+DAPCSG GV+ ++ D++ + D E L +Q +L+ + L+K GG LVY
Sbjct: 317 NETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSERLSTIQIAILEKIAPLLKQGGRLVY 376
Query: 464 STCSIDPEENEERVEAFLLRHPEFSID 490
STC+I+ ENE+ +E FL HPEF D
Sbjct: 377 STCTIEKIENEQVIEKFLQEHPEFEWD 403
>gi|423511899|ref|ZP_17488430.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
HuA2-1]
gi|402450160|gb|EJV81994.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
HuA2-1]
Length = 444
Score = 196 bits (499), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 134/390 (34%), Positives = 214/390 (54%), Gaps = 28/390 (7%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+D +D+ L+T++V GTI+ R LD+ + +E + +LR+ Y+++ LD
Sbjct: 36 IDRKDIGLLTEMVYGTIQRRDTLDYYLQPFLR-----KKVEAWVRVLLRLSLYQMLYLDR 90
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A + E V +AK G +VNG+LR + +P LE + R LA
Sbjct: 91 VPERAAIHEAVEIAKRRGHKGISGMVNGVLRSI------QREGVPSLEEIENPVER-LAI 143
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
SHP+W+V+ W G E A K+ N P + R N K VT + V L ++
Sbjct: 144 ATSHPMWLVQEWASEYGLETAEKMCEVNMLPPVPTARVNVDK-VTVEEAVALLADEGIEA 202
Query: 286 PH-ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 344
ELS ++ I+++ G NV K+G ++QDES+ LV ++P+ G +++D CA
Sbjct: 203 KRGELS---EDAIQIERG--NVAHTEAFKKGFLSIQDESSMLVARALEPKKGDTVLDSCA 257
Query: 345 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT----FA 400
APGGKT ++A L G G V ++D++ ++R++ + AK + +V T+ D R FA
Sbjct: 258 APGGKTTHIAERLDGTGKVMSLDLHAHKVRLIEQQAKRLGLENV-ETMALDARKVQEHFA 316
Query: 401 DNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGV 460
+ S DK+L+DAPCSG GV+ ++ D++ + D E L +Q +L+ + L+K GG
Sbjct: 317 NES---FDKILVDAPCSGFGVIRRKPDIKLGKDKGDSERLSTIQLAILEKIAPLLKQGGR 373
Query: 461 LVYSTCSIDPEENEERVEAFLLRHPEFSID 490
LVYSTC+I+ ENE+ ++ FL HPEF D
Sbjct: 374 LVYSTCTIEKIENEQVIKQFLQEHPEFEWD 403
>gi|291527116|emb|CBK92702.1| ribosomal RNA small subunit methyltransferase RsmB [Eubacterium
rectale M104/1]
Length = 469
Score = 196 bits (499), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 134/424 (31%), Positives = 208/424 (49%), Gaps = 32/424 (7%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L +D +T +V GTI + LD++I + M+P + +LR+ Y+I +D
Sbjct: 73 LSKQDRAFMTRLVDGTIEYMLQLDYIIDSFS--KTKVRKMKPFIRNLLRMSVYQIKYMDA 130
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P AV +E V+LAK VNG+LR + D Q L+
Sbjct: 131 VPDSAVCNEAVKLAKRHKFAQLSGFVNGVLRNIA-------------RNIDSVQFDTLSI 177
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
YS P W+V R+ G+++A ++ +S + S+R N + M L+
Sbjct: 178 RYSMPQWIVDRFVAEYGEKKAEEIFKAFHSKSTISIRTNLTRCTPDELRAM------LEA 231
Query: 286 PHELSLHLDE--FIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCC 343
+ +DE + V +G + ++GL VQD S+ LV P+ G ++D C
Sbjct: 232 EGVIVTPVDELNYAFVISGFDYLNGLQSFRDGLFYVQDISSMLVAQTAAPKKGDYVIDVC 291
Query: 344 AAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS 403
AAPGGK+ ++A L G G V A D+ ++ ++ E H +N++ + AD S
Sbjct: 292 AAPGGKSTHIAELLKGSGHVLARDLTDTKVGMIEENIDRHGLNNMSAEVWDATVPDAD-S 350
Query: 404 TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463
K D ++ D PCSGLGVL ++ D+R+ E ++EL LQ ++LD VKP GVLVY
Sbjct: 351 AEKADILICDLPCSGLGVLGRKKDIRYKMTPESVDELAALQRQILDTVHTYVKPNGVLVY 410
Query: 464 STCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAAR 523
STC+ID ENE+ V F+ +HPEF +D + F G P +H DG F AR
Sbjct: 411 STCTIDEAENEDNVRWFIEKHPEFELDMS-------FAEGTGMKQILPGEHGSDGFFIAR 463
Query: 524 LVRA 527
+++
Sbjct: 464 FIKS 467
>gi|398310669|ref|ZP_10514143.1| 16S rRNA methyltransferase B [Bacillus mojavensis RO-H-1]
Length = 447
Score = 196 bits (499), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 119/391 (30%), Positives = 218/391 (55%), Gaps = 18/391 (4%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
++ L D+D L+T++V GT++ + LD+++ + + ++P ++Q+LR+ Y++
Sbjct: 32 IKSNKLSDQDRGLLTELVYGTLQNKIALDYMLKPFINKPQ---KVKPWVIQLLRLSLYQM 88
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
L+ +P AV+ E V +AK G + VNG+LR + +P + +
Sbjct: 89 EYLEKIPDRAVIHEAVEIAKNRGHKGIASFVNGVLRSI------QREGVPSFDAIEDPVL 142
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
R LAT SHP W+V+ W G + A K+ + P +LR N K RA+++ Q+
Sbjct: 143 R-LATETSHPEWLVKEWIAAYGFDAAEKICRIHLIPPKQTLRVNQMK-TDRAEILDQMAA 200
Query: 281 LKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIV 340
++ E ++ +++ G + + G ++QDES+ LV +DP+PG++++
Sbjct: 201 EGIEA--EKGDLAEDAVKLVKG--TIAGTHFFQTGEVSIQDESSMLVARALDPKPGETVL 256
Query: 341 DCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 400
D CAAPGGK+ ++A + +G V ++D++K +++++ E ++ + S+I D R
Sbjct: 257 DACAAPGGKSAHIAELMENKGSVTSLDLHKHKVKLIKEASERLGL-SIIDAKTMDARKAG 315
Query: 401 DN-STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGG 459
+ + + D++L+DAPCSG GV+ ++ D+++ + D L +Q +L + LVK GG
Sbjct: 316 ETFESEQFDRILVDAPCSGFGVIRRKPDMKYTKTPNDSSRLAEIQLSILREIAPLVKKGG 375
Query: 460 VLVYSTCSIDPEENEERVEAFLLRHPEFSID 490
LVYSTC++D ENEE + AF+ HP+F D
Sbjct: 376 TLVYSTCTMDRTENEEVIHAFIQEHPDFEPD 406
>gi|116514363|ref|YP_813269.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus delbrueckii
subsp. bulgaricus ATCC BAA-365]
gi|116093678|gb|ABJ58831.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus delbrueckii
subsp. bulgaricus ATCC BAA-365]
Length = 438
Score = 196 bits (499), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 148/454 (32%), Positives = 229/454 (50%), Gaps = 31/454 (6%)
Query: 76 AFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICL 135
A A L+ +GS N + + L D + RL T++V GTI+++ YL++ +
Sbjct: 9 ALATLMKVINQGSYSN----ISLNHALKAAKLPDEESRLATNLVYGTIQYQLYLEYQLKD 64
Query: 136 LCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGN--LVN 192
L ++PLLL + Y+I LD +P AV+DE +LAKV RP + LVN
Sbjct: 65 LVKARLREPYIKPLLL----MSAYQIFFLDKVPNRAVLDEANKLAKVYGRPKSSGYRLVN 120
Query: 193 GILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVW 252
GILR L L+ LP ++ L+ S P+W+ + G+ A K+M
Sbjct: 121 GILRSL--LRRGEVLP-------EKDAPDYLSVKCSMPLWLSDYFVANWGKSRAEKIMAS 171
Query: 253 NNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLL 312
NS +R ++ R +V L+ P E L + + G ++
Sbjct: 172 FNSKAKNEIRISALADEKR--VVRDLDRAHF-APQESPLASRSYALSRGG---IVMTDFF 225
Query: 313 KEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGR 372
K+G VQDE+A LV D + + +D C+APGGKT+ +A L G V A+DI++ +
Sbjct: 226 KDGEVTVQDEAASLVAEAFDFKGNEQALDACSAPGGKTIQIAEQLP-DGQVTALDIHEKK 284
Query: 373 LRILNETAKLHQVNSVIRTIHADLRTFADN-STVKCDKVLLDAPCSGLGVLSKRADLRWN 431
LR++ E A +V ++ D R + S + DK+L+DAPCSGLG+L ++ ++R+
Sbjct: 285 LRLVKENAARMRVADRVKVKALDARKAREYFSGQEFDKILIDAPCSGLGLLRRKPEIRYT 344
Query: 432 RRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDP 491
+ ED+ L +Q ++L+ S L+K GG LVYSTCSI EENEE V FL HP+F++ P
Sbjct: 345 KTAEDISHLAEIQLDILNEVSGLLKKGGELVYSTCSISVEENEENVRKFLAAHPDFALKP 404
Query: 492 ADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARLV 525
+ + G P ++ DG F A+
Sbjct: 405 FE---TAKISAPKGMLKILPDSYNSDGFFIAKFT 435
>gi|385816025|ref|YP_005852416.1| rRNA methylase [Lactobacillus delbrueckii subsp. bulgaricus 2038]
gi|325126062|gb|ADY85392.1| rRNA methylase [Lactobacillus delbrueckii subsp. bulgaricus 2038]
Length = 438
Score = 196 bits (499), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 148/454 (32%), Positives = 229/454 (50%), Gaps = 31/454 (6%)
Query: 76 AFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICL 135
A A L+ +GS N + + L D + RL T++V GTI+++ YL++ +
Sbjct: 9 ALATLMKVINQGSYSN----ISLNHALKAAKLPDEESRLATNLVYGTIQYQLYLEYQLKD 64
Query: 136 LCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGN--LVN 192
L ++PLLL + Y+I LD +P AV+DE +LAKV RP + LVN
Sbjct: 65 LVKARLREPYIKPLLL----MSAYQIFFLDKVPNRAVLDEANKLAKVYGRPKSSGYRLVN 120
Query: 193 GILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVW 252
GILR L L+ LP ++ L+ S P+W+ + G+ A K+M
Sbjct: 121 GILRSL--LRRGEVLP-------EKDAPDYLSVKCSMPLWLSDYFVANWGKSRAEKIMAS 171
Query: 253 NNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLL 312
NS +R ++ R +V L+ P E L + + G ++
Sbjct: 172 FNSKAKNEIRISALADEKR--VVRDLDRAHF-APQESPLASRSYALSRGG---IVMTDFF 225
Query: 313 KEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGR 372
K+G VQDE+A LV D + + +D C+APGGKT+ +A L G V A+DI++ +
Sbjct: 226 KDGEVTVQDEAASLVAEAFDFKGNEQALDACSAPGGKTIQIAEQLP-DGQVTALDIHEKK 284
Query: 373 LRILNETAKLHQVNSVIRTIHADLRTFADN-STVKCDKVLLDAPCSGLGVLSKRADLRWN 431
LR++ E A +V ++ D R + S + DK+L+DAPCSGLG+L ++ ++R+
Sbjct: 285 LRLVKENAARMRVADRVKVKALDARKAREYFSGQEFDKILIDAPCSGLGLLRRKPEIRYT 344
Query: 432 RRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDP 491
+ ED+ L +Q ++L+ S L+K GG LVYSTCSI EENEE V FL HP+F++ P
Sbjct: 345 KTAEDISHLAEIQLDILNEVSGLLKKGGELVYSTCSISVEENEENVRKFLAAHPDFALKP 404
Query: 492 ADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARLV 525
+ + G P ++ DG F A+
Sbjct: 405 FE---TAKISAPKGMLKILPDSYNSDGFFIAKFT 435
>gi|418028830|ref|ZP_12667379.1| Methyltransferase [Lactobacillus delbrueckii subsp. bulgaricus CNCM
I-1632]
gi|354691167|gb|EHE91105.1| Methyltransferase [Lactobacillus delbrueckii subsp. bulgaricus CNCM
I-1632]
Length = 431
Score = 196 bits (499), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 148/454 (32%), Positives = 229/454 (50%), Gaps = 31/454 (6%)
Query: 76 AFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICL 135
A A L+ +GS N + + L D + RL T++V GTI+++ YL++ +
Sbjct: 2 ALATLMKVINQGSYSN----ISLNHALKAAKLPDEESRLATNLVYGTIQYQLYLEYQLKD 57
Query: 136 LCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGN--LVN 192
L ++PLLL + Y+I LD +P AV+DE +LAKV RP + LVN
Sbjct: 58 LVKARLREPYIKPLLL----MSAYQIFFLDKVPNRAVLDEANKLAKVYGRPKSSGYRLVN 113
Query: 193 GILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVW 252
GILR L L+ LP ++ L+ S P+W+ + G+ A K+M
Sbjct: 114 GILRSL--LRRGEVLP-------EKDAPDYLSVKCSMPLWLSDYFVANWGKSRAEKIMAS 164
Query: 253 NNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLL 312
NS +R ++ R +V L+ P E L + + G ++
Sbjct: 165 FNSKAKNEIRISALADEKR--VVRDLDRAHF-APQESPLASRSYALSRGG---IVMTDFF 218
Query: 313 KEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGR 372
K+G VQDE+A LV D + + +D C+APGGKT+ +A L G V A+DI++ +
Sbjct: 219 KDGEVTVQDEAASLVAEAFDFKGNEQALDACSAPGGKTIQIAEQLP-DGQVTALDIHEKK 277
Query: 373 LRILNETAKLHQVNSVIRTIHADLRTFADN-STVKCDKVLLDAPCSGLGVLSKRADLRWN 431
LR++ E A +V ++ D R + S + DK+L+DAPCSGLG+L ++ ++R+
Sbjct: 278 LRLVKENAARMRVADRVKVKALDARKAREYFSGQEFDKILIDAPCSGLGLLRRKPEIRYT 337
Query: 432 RRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDP 491
+ ED+ L +Q ++L+ S L+K GG LVYSTCSI EENEE V FL HP+F++ P
Sbjct: 338 KTAEDISHLAEIQLDILNEVSGLLKKGGELVYSTCSISVEENEENVRKFLAAHPDFALKP 397
Query: 492 ADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARLV 525
+ + G P ++ DG F A+
Sbjct: 398 FE---TAKISAPKGMLKILPDSYNSDGFFIAKFT 428
>gi|418035126|ref|ZP_12673585.1| Methyltransferase [Lactobacillus delbrueckii subsp. bulgaricus CNCM
I-1519]
gi|354691064|gb|EHE91004.1| Methyltransferase [Lactobacillus delbrueckii subsp. bulgaricus CNCM
I-1519]
Length = 431
Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 148/454 (32%), Positives = 229/454 (50%), Gaps = 31/454 (6%)
Query: 76 AFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICL 135
A A L+ +GS N + + L D + RL T++V GTI+++ YL++ +
Sbjct: 2 ALATLMKVINQGSYSN----ISLNHALKAAKLPDEESRLATNLVYGTIQYQLYLEYQLKD 57
Query: 136 LCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGN--LVN 192
L ++PLLL + Y+I LD +P AV+DE +LAKV RP + LVN
Sbjct: 58 LVKARLREPYIKPLLL----MSAYQIFFLDKVPNRAVLDEANKLAKVYGRPKSSGYRLVN 113
Query: 193 GILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVW 252
GILR L L+ LP ++ L+ S P+W+ + G+ A K+M
Sbjct: 114 GILRSL--LRRGEVLP-------EKDAPDYLSVKCSMPLWLSDYFVANWGKSRAEKIMAS 164
Query: 253 NNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLL 312
NS +R ++ R +V L+ P E L + + G ++
Sbjct: 165 FNSKAKNEIRISALADEKR--VVRDLDRAHFD-PQESPLASRSYALSRGG---IVMTDFF 218
Query: 313 KEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGR 372
K+G VQDE+A LV D + + +D C+APGGKT+ +A L G V A+DI++ +
Sbjct: 219 KDGEVTVQDEAASLVAEAFDFKGNEQALDACSAPGGKTIQIAEQLP-DGQVTALDIHEKK 277
Query: 373 LRILNETAKLHQVNSVIRTIHADLRTFADN-STVKCDKVLLDAPCSGLGVLSKRADLRWN 431
LR++ E A +V ++ D R + S + DK+L+DAPCSGLG+L ++ ++R+
Sbjct: 278 LRLVKENAARMRVADRVKVKALDARKAREYFSGQEFDKILIDAPCSGLGLLRRKPEIRYT 337
Query: 432 RRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDP 491
+ ED+ L +Q ++L+ S L+K GG LVYSTCSI EENEE V FL HP+F++ P
Sbjct: 338 KTAEDISHLAEIQLDILNEVSGLLKKGGELVYSTCSISVEENEENVRKFLAAHPDFALKP 397
Query: 492 ADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARLV 525
+ + G P ++ DG F A+
Sbjct: 398 FE---TAKISAPKGMLKILPDSYNSDGFFIAKFT 428
>gi|47569491|ref|ZP_00240171.1| sun protein [Bacillus cereus G9241]
gi|47553820|gb|EAL12191.1| sun protein [Bacillus cereus G9241]
Length = 444
Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 131/387 (33%), Positives = 212/387 (54%), Gaps = 22/387 (5%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+D +D+ L+T+IV GTI+ R LD+ + +E + +LR+ Y+++ LD
Sbjct: 36 IDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLK-----KKVEAWVRVLLRLSLYQMIYLDR 90
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A + E V +AK G +VNG+LR + +P E D + A+AT
Sbjct: 91 VPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSI----QREGVPSVD-EIKDPVERLAIAT 145
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
SHP+W+V+ WT G E A K+ N P + R N K +T + + L ++
Sbjct: 146 --SHPIWLVQEWTSEYGLETAEKMCEVNMLPPVPTARVNVDK-ITVEEAIALLASEGIEA 202
Query: 286 PH-ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 344
+LS D+ I+++ G NV K+G ++QDES+ LV ++P G ++D CA
Sbjct: 203 KRGDLS---DDAIQIEKG--NVAHTDAFKKGFLSIQDESSMLVARALEPDEGDVVLDSCA 257
Query: 345 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-S 403
APGGKT ++A L G G V ++D++ ++R++ + A+ + +V T D R ++ +
Sbjct: 258 APGGKTTHIAERLKGTGQVMSLDLHAHKVRLIKQQAERLGLENV-ETKALDARKVQEHFA 316
Query: 404 TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463
DK+L+DAPCSG GV+ ++ D++ + D E L +Q +L+ + L+K GG LVY
Sbjct: 317 NETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSERLSTIQLAILEKIAPLLKQGGRLVY 376
Query: 464 STCSIDPEENEERVEAFLLRHPEFSID 490
STC+I+ ENE+ +E FL HPEF D
Sbjct: 377 STCTIEKIENEQVIERFLQEHPEFEWD 403
>gi|423522305|ref|ZP_17498778.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
HuA4-10]
gi|401174999|gb|EJQ82202.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
HuA4-10]
Length = 444
Score = 196 bits (498), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 134/390 (34%), Positives = 213/390 (54%), Gaps = 28/390 (7%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+D +D+ L+T++V GTI+ R LD+ + +E + +LR+ Y+++ LD
Sbjct: 36 IDKKDIGLLTEMVYGTIQRRDTLDYYLQPFLR-----KKVEAWVRVLLRLSLYQMLYLDR 90
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A + E V +AK G +VNG+LR + +P LE + R LA
Sbjct: 91 VPERAAIHEAVEIAKRRGHKGISGMVNGVLRSI------QREGVPSLEEIENPVER-LAI 143
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
SHP+W+V+ W G E A K+ N P + R N K VT + V L ++
Sbjct: 144 ATSHPMWLVQEWASEYGLETAEKMCEVNMLPPVPTARVNVDK-VTVEEAVALLADEGIEA 202
Query: 286 PH-ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 344
ELS ++ I+++ G NV K+G ++QDES+ LV ++P G +++D CA
Sbjct: 203 KRGELS---EDAIQIERG--NVAHTEAFKKGFLSIQDESSMLVARALEPNKGDAVLDSCA 257
Query: 345 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT----FA 400
APGGKT ++A L G G V ++D++ ++R++ + AK + +V T+ D R FA
Sbjct: 258 APGGKTTHIAERLDGTGKVMSLDLHAHKVRLIEQQAKRLGLENV-ETMALDARKVQEHFA 316
Query: 401 DNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGV 460
+ S DK+L+DAPCSG GV+ ++ D++ + D E L +Q +L+ + L+K GG
Sbjct: 317 NES---FDKILVDAPCSGFGVIRRKPDIKLGKDKGDSERLSTIQLAILEKIAPLLKQGGR 373
Query: 461 LVYSTCSIDPEENEERVEAFLLRHPEFSID 490
LVYSTC+I+ ENE+ ++ FL HPEF D
Sbjct: 374 LVYSTCTIEKIENEQVIKQFLQEHPEFEWD 403
>gi|229061468|ref|ZP_04198813.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
AH603]
gi|229134673|ref|ZP_04263482.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BDRD-ST196]
gi|229168605|ref|ZP_04296328.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
AH621]
gi|228615011|gb|EEK72113.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
AH621]
gi|228648719|gb|EEL04745.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BDRD-ST196]
gi|228717891|gb|EEL69539.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
AH603]
Length = 415
Score = 196 bits (498), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 134/390 (34%), Positives = 213/390 (54%), Gaps = 28/390 (7%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+D +D+ L+T++V GTI+ R LD+ + +E + +LR+ Y+++ LD
Sbjct: 7 IDRKDIGLLTEMVYGTIQRRDTLDYYLQPFLR-----KKVEAWVRVLLRLSLYQMLYLDR 61
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A + E V +AK G +VNG+LR + +P LE + R LA
Sbjct: 62 VPERAAIHEAVEIAKRRGHKGISGMVNGVLRSI------QREGVPSLEEIENPVER-LAI 114
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
SHP+W+V+ W G E A K+ N P + R N K VT + V L ++
Sbjct: 115 ATSHPMWLVQEWASEYGLETAEKMCEVNMLPPVPTARVNVDK-VTVEEAVALLADEGIEA 173
Query: 286 PH-ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 344
ELS ++ I+++ G NV K+G ++QDES+ LV ++P G +++D CA
Sbjct: 174 KRGELS---EDAIQIERG--NVAHTEAFKKGFLSIQDESSMLVARALEPNKGDTVLDSCA 228
Query: 345 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT----FA 400
APGGKT ++A L G G V ++D++ ++R++ + AK + +V T+ D R FA
Sbjct: 229 APGGKTTHIAERLDGTGKVMSLDLHAHKVRLIEQQAKRLGLENV-ETMALDARKVQEHFA 287
Query: 401 DNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGV 460
+ S DK+L+DAPCSG GV+ ++ D++ + D E L +Q +L+ + L+K GG
Sbjct: 288 NES---FDKILVDAPCSGFGVIRRKPDIKLGKDKGDSERLSTIQLAILEKIAPLLKQGGR 344
Query: 461 LVYSTCSIDPEENEERVEAFLLRHPEFSID 490
LVYSTC+I+ ENE+ ++ FL HPEF D
Sbjct: 345 LVYSTCTIEKIENEQVIKQFLQEHPEFEWD 374
>gi|423574529|ref|ZP_17550648.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
MSX-D12]
gi|423604508|ref|ZP_17580401.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VD102]
gi|401212054|gb|EJR18800.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
MSX-D12]
gi|401245128|gb|EJR51486.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VD102]
Length = 444
Score = 196 bits (498), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 131/387 (33%), Positives = 212/387 (54%), Gaps = 22/387 (5%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+D +D+ L+T+IV GTI+ R LD+ + +E + +LR+ Y+++ LD
Sbjct: 36 IDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLK-----KKVEAWVRVLLRLSLYQMIYLDR 90
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A + E V +AK G +VNG+LR + +P E D + A+AT
Sbjct: 91 VPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSI----QREGVPSVD-EIKDPVERLAIAT 145
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
SHP+W+V+ WT G E A K+ N P + R N K +T + + L ++
Sbjct: 146 --SHPIWLVQEWTSEYGLETAEKMCEVNMLPPVPTARVNVDK-ITVEEAIALLASEGIEA 202
Query: 286 PH-ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 344
+LS D+ I+++ G NV K+G ++QDES+ LV ++P G ++D CA
Sbjct: 203 KRGDLS---DDAIQIEKG--NVAHTDAFKKGFLSIQDESSMLVARALEPDEGDVVLDSCA 257
Query: 345 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-S 403
APGGKT ++A L G G V ++D++ ++R++ + A+ + +V T D R ++ +
Sbjct: 258 APGGKTTHIAERLKGTGQVMSLDLHAHKVRLIKQQAERLGLGNV-ETKALDARKVQEHFA 316
Query: 404 TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463
DK+L+DAPCSG GV+ ++ D++ + D E L +Q +L+ + L+K GG LVY
Sbjct: 317 NETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSERLSTIQLAILEKIAPLLKQGGRLVY 376
Query: 464 STCSIDPEENEERVEAFLLRHPEFSID 490
STC+I+ ENE+ +E FL HPEF D
Sbjct: 377 STCTIEKIENEQVIERFLQEHPEFEWD 403
>gi|423558572|ref|ZP_17534874.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
MC67]
gi|401191840|gb|EJQ98862.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
MC67]
Length = 444
Score = 196 bits (498), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 134/390 (34%), Positives = 213/390 (54%), Gaps = 28/390 (7%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+D +D+ L+T++V GTI+ R LD+ + +E + +LR+ Y+++ LD
Sbjct: 36 IDRKDIGLLTEMVYGTIQRRDTLDYYLQPFLR-----KKVEAWVRVLLRLSLYQMLYLDR 90
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A + E V +AK G +VNG+LR + +P LE + R LA
Sbjct: 91 VPERAAIHEAVEIAKRRGHKGISGMVNGVLRSI------QREGVPSLEEIENPVER-LAI 143
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
SHP+W+V+ W G E A K+ N P + R N K VT + V L ++
Sbjct: 144 ATSHPMWLVQEWASEYGLETAEKMCEINMLPPVPTARVNVDK-VTVEEAVALLADEGIEA 202
Query: 286 PH-ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 344
ELS ++ I+++ G NV K+G ++QDES+ LV ++P G +++D CA
Sbjct: 203 KRGELS---EDAIQIERG--NVAHTEAFKKGFLSIQDESSMLVARALEPNKGDAVLDSCA 257
Query: 345 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT----FA 400
APGGKT ++A L G G V ++D++ ++R++ + AK + +V T+ D R FA
Sbjct: 258 APGGKTTHIAERLDGTGKVMSLDLHAHKVRLIEQQAKRLGLENV-ETMALDARKVQEHFA 316
Query: 401 DNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGV 460
+ S DK+L+DAPCSG GV+ ++ D++ + D E L +Q +L+ + L+K GG
Sbjct: 317 NES---FDKILVDAPCSGFGVIRRKPDIKLGKDKGDSERLSTIQLAILEKIAPLLKQGGR 373
Query: 461 LVYSTCSIDPEENEERVEAFLLRHPEFSID 490
LVYSTC+I+ ENE+ ++ FL HPEF D
Sbjct: 374 LVYSTCTIEKIENEQVIKQFLQEHPEFEWD 403
>gi|374850909|dbj|BAL53885.1| ribosomal RNA small subunit methyltransferase B [uncultured
Acidobacteria bacterium]
gi|374851661|dbj|BAL54614.1| ribosomal RNA small subunit methyltransferase B [uncultured
Acidobacteria bacterium]
Length = 447
Score = 196 bits (498), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 138/427 (32%), Positives = 219/427 (51%), Gaps = 15/427 (3%)
Query: 103 RTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIV 162
R L +RD RL ++V G +RW+R LDHLI + ++ ++ + LR+G Y++
Sbjct: 31 RVDRLPERDRRLAYELVLGVLRWQRQLDHLIA--HYSGRSPDRLDEPIRIALRLGLYQLR 88
Query: 163 KLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQAR 221
L+ +P YA V+E V LAK P LVN +LR+ D P ++
Sbjct: 89 FLERIPAYAAVNEAVALAKRYGPPWGAGLVNAVLRRAASTPDER--PWERIAD----PIE 142
Query: 222 ALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLL 281
+ SHP W+VR+W G EEA+ LM NN P +R N T D + + L
Sbjct: 143 RVGVELSHPSWLVRKWMADFGTEEALALMRANNQAPPVVIRFNVLAAST--DEIAR-ALA 199
Query: 282 KLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVD 341
+ + E S ++ RV++G + + + G +Q+E++ L+ VV P+PG +++
Sbjct: 200 REGIEIEPSPYVPGAYRVRSGSLSP-NSEAWRRGWVYIQEEASQLIAHVVAPEPGMRVLE 258
Query: 342 CCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD 401
CAAPG KT +MA+ + +G++ A D + RLR+L + A+ V +
Sbjct: 259 ICAAPGSKTTHMAALMGNEGMIVAGDRHLARLRVLKQLAERLCVRIAYPLVFEGRGPVPL 318
Query: 402 NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVL 461
D+VL+DAPCSG G L + +++W E++ + Q+ LL A+ V+PGG L
Sbjct: 319 LPAQLFDRVLVDAPCSGTGTLRRHPEIKWRLAPEELSHMARQQEALLREAARWVRPGGRL 378
Query: 462 VYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFA 521
VY+TCS++ EENEE + +FL +F P V F T+ G+ + P + +DG F
Sbjct: 379 VYATCSLEREENEEIINSFLSTRRDFY--PVVPPVAEAFRTESGYVRTFPHRQGMDGFFV 436
Query: 522 ARLVRAF 528
A L + F
Sbjct: 437 AVLEKNF 443
>gi|384187925|ref|YP_005573821.1| sun protein [Bacillus thuringiensis serovar chinensis CT-43]
gi|410676239|ref|YP_006928610.1| ribosomal RNA small subunit methyltransferase B [Bacillus
thuringiensis Bt407]
gi|423528274|ref|ZP_17504719.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
HuB1-1]
gi|452200304|ref|YP_007480385.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
thuringiensis serovar thuringiensis str. IS5056]
gi|326941634|gb|AEA17530.1| sun protein [Bacillus thuringiensis serovar chinensis CT-43]
gi|402451937|gb|EJV83756.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
HuB1-1]
gi|409175368|gb|AFV19673.1| ribosomal RNA small subunit methyltransferase B [Bacillus
thuringiensis Bt407]
gi|452105697|gb|AGG02637.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
thuringiensis serovar thuringiensis str. IS5056]
Length = 444
Score = 196 bits (498), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 132/387 (34%), Positives = 213/387 (55%), Gaps = 22/387 (5%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+D +D+ L+T+IV GTI+ R LD+ + +E + +LR+ Y+++ LD
Sbjct: 36 IDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLK-----KKVEAWVRVLLRLSLYQMIYLDR 90
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A + E V +AK G +VNG+LR + +P E D + A+AT
Sbjct: 91 VPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSI----QREGVPSVD-EIKDPVERLAIAT 145
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
SHPVW+V+ WT G E A K+ N P + R N K VT + + L ++
Sbjct: 146 --SHPVWLVQEWTSAYGLETAEKMCEVNMLPPVPTARVNVDK-VTVEEAIELLASEGIEA 202
Query: 286 PH-ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 344
+LS D+ I+++ G NV K+G ++QDES+ LV ++P G +++D CA
Sbjct: 203 KRGDLS---DDAIQIERG--NVAHTEAFKKGFLSIQDESSMLVARALEPNTGDAVLDSCA 257
Query: 345 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-S 403
APGGKT ++A L G G V ++D++ ++R++ + A+ + +V T D R ++ +
Sbjct: 258 APGGKTTHIAERLKGTGKVMSLDLHAHKVRLIKQQAERLGLENV-ETKALDARKVQEHFA 316
Query: 404 TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463
DK+L+DAPCSG GV+ ++ D++ + D E L +Q +L+ + L+K GG LVY
Sbjct: 317 NETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSERLSTIQLAILEKIAPLLKQGGRLVY 376
Query: 464 STCSIDPEENEERVEAFLLRHPEFSID 490
STC+I+ ENE+ ++ FL HPEF D
Sbjct: 377 STCTIEKIENEQVIDKFLKEHPEFEWD 403
>gi|423615874|ref|ZP_17591708.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VD115]
gi|401260411|gb|EJR66584.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VD115]
Length = 444
Score = 196 bits (498), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 133/389 (34%), Positives = 213/389 (54%), Gaps = 26/389 (6%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+D +D+ L+T+IV GTI+ R LD+ + +E + +LR+ Y+++ LD
Sbjct: 36 IDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLK-----KKVEAWVRVLLRLSLYQMIYLDR 90
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKL-EGNDRAQARALA 224
+P A + E V +AK G +VNG+LR + +P L E D + A+A
Sbjct: 91 VPERAAIHEAVEIAKRRGHKGISGMVNGVLRSI------QREGVPSLDEIKDPVERLAIA 144
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQ 284
T SHPVW+V+ W G E A K+ N P + R N V + + + LL +
Sbjct: 145 T--SHPVWLVQDWASEYGLETAEKMCKVNMLPPVPTARVN----VDKVTVEEAIELLASE 198
Query: 285 VPHELSLHL-DEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCC 343
S L D+ I+++ G NV K+G ++QDES+ LV ++P G++++D C
Sbjct: 199 GIEAKSGDLSDDAIQIERG--NVAHTEAFKKGFLSIQDESSMLVARALEPNEGETVLDSC 256
Query: 344 AAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETA-KLHQVNSVIRTIHA-DLRTFAD 401
AAPGGKT ++A L G G V ++D++ ++R++ + A +L N I+ + A ++
Sbjct: 257 AAPGGKTTHIAERLKGTGKVMSLDLHAHKVRLIKQQAERLGLENVEIKALDARKVQEHFA 316
Query: 402 NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVL 461
N T DK+L+DAPCSG GV+ ++ D++ + D E L +Q +L+ + L+K GG L
Sbjct: 317 NETF--DKILVDAPCSGFGVIRRKPDIKLGKDKGDSERLSTIQLAILEKIAPLLKQGGRL 374
Query: 462 VYSTCSIDPEENEERVEAFLLRHPEFSID 490
VYSTC+I+ ENE+ ++ FL HPEF D
Sbjct: 375 VYSTCTIEKIENEQVIDKFLKEHPEFEWD 403
>gi|365904219|ref|ZP_09441978.1| 16S rRNA methyltransferase B [Lactobacillus versmoldensis KCTC
3814]
Length = 440
Score = 196 bits (498), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 134/428 (31%), Positives = 233/428 (54%), Gaps = 43/428 (10%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
+ DL + D RL+T+IV G ++ R L++ I D+K +E ++ +L Y++
Sbjct: 30 LKKSDLSNADSRLMTNIVYGVLQHRYVLEYQIKPYIQDKK----VEQWVMILLMTAVYQM 85
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
LD +P +A+ +E+V +AK G GN V +LR + + LPK GN +
Sbjct: 86 QYLDKVPEHAIFNESVEIAKANGNKGVGNFVTAVLRNY---QRHGFQELPK--GN---SS 137
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
AL+ YS P+W+V + G +A ++ N S+R N+ K ++ +DL +L+
Sbjct: 138 HALSLRYSTPIWLVDLLIQQQGMNKAKSVLESINQASDISIRVNTNK-ISVSDLSEKLSS 196
Query: 281 LKLQV-PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSI 339
+ P ++S + + N++ ++GL +QDES+ V ++ + + +
Sbjct: 197 QGFDMKPSQISA-----VGLTCPHGNLVDTEEFRQGLFTIQDESSMTVAPALNLKDDELV 251
Query: 340 VDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR-- 397
+D CAAPGGKT ++AS L+ G V +DI+K + +++ E ++ +I+T D R
Sbjct: 252 LDSCAAPGGKTTHIASYLTN-GSVMGLDIHKPKTKLIQENSQRLGYEDIIKTKALDARKA 310
Query: 398 --TFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLV 455
F NS DK+L+DAPCSGLG++ ++ +LR+ R+ ED+ +L+ +Q ++L++ + L+
Sbjct: 311 KDAFEPNS---FDKILVDAPCSGLGLIRRKPELRYFRKPEDLLDLQKIQLQILNSLTTLL 367
Query: 456 KPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPA-----------DG---LVPSDFV 501
KP G++V+STC+ D EENE+ V FL + +F + P DG L+P D+
Sbjct: 368 KPNGIMVFSTCTFDAEENEDVVMKFLQSNNDFEVIPVKHEQELDKNVHDGVLKLLPDDYF 427
Query: 502 TKHGFFFS 509
T GFF +
Sbjct: 428 TD-GFFIA 434
>gi|359411381|ref|ZP_09203846.1| sun protein [Clostridium sp. DL-VIII]
gi|357170265|gb|EHI98439.1| sun protein [Clostridium sp. DL-VIII]
Length = 438
Score = 196 bits (498), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 138/422 (32%), Positives = 227/422 (53%), Gaps = 22/422 (5%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD 165
+L+D+D L+T+IV G +R ++ LD +I D K M+ +L ILR+ Y++ LD
Sbjct: 33 ELNDKDKALLTEIVYGVLRRKKTLDIIISNFVKDIKL---MKKDILNILRVAVYQMNFLD 89
Query: 166 -MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P YA +E V AK + LVNGILR D + K++ A
Sbjct: 90 KVPSYAACNEAVEEAK-EISENDSKLVNGILRSFTKNPDEIEVVGNKID--------EYA 140
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQ 284
+S WM+R K G+ + K+M+ N+ P S+R N K D V + L KL+
Sbjct: 141 YKFSFEPWMIRLLIKQYGENLSKKIMLGLNAIPQVSVRVNEIKA--DYDEVFE-ELEKLE 197
Query: 285 VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 344
E + E I +K G +++ L KEG VQDESA +V +++ + G ++D C+
Sbjct: 198 YDVEEGVICPEAICIKGG-KSIESNPLFKEGKITVQDESAMVVAPLLELEEGMKVIDLCS 256
Query: 345 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNST 404
APGGKT ++A L G V A DI++ +L ++ E + + +V I+ + T +
Sbjct: 257 APGGKTTHIAEMLQNTGKVLAFDIHESKLGLIKENCERLGITNV--EINTNDATKLNPEL 314
Query: 405 VKC-DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463
V+ D++L+D PCSG+G++ K+ +++WN+ D+ E+ +Q E+++ A ++ GG++VY
Sbjct: 315 VESSDRILIDVPCSGIGIIRKKPEIKWNKTRSDLREIIPIQREIMENAWQYLRSGGIMVY 374
Query: 464 STCSIDPEENEERVEAFLLRHPEFSIDPA-DGLVPSDFVTKHGFFFSDPIKHSLDGAFAA 522
STC+++ EENEE ++ FL H + SI G + K+G P ++DG F A
Sbjct: 375 STCTLNKEENEENIDWFLSSHKDCSIKKIFIGNQNNLIYNKNGSLTIMP-NENMDGFFIA 433
Query: 523 RL 524
+L
Sbjct: 434 KL 435
>gi|423385368|ref|ZP_17362624.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG1X1-2]
gi|401635424|gb|EJS53179.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG1X1-2]
Length = 444
Score = 196 bits (498), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 132/387 (34%), Positives = 213/387 (55%), Gaps = 22/387 (5%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+D +D+ L+T+IV GTI+ R LD+ + +E + +LR+ Y+++ LD
Sbjct: 36 IDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLK-----KKVEAWVRVLLRLSLYQMIYLDR 90
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A + E V +AK G +VNG+LR + +P E D + A+AT
Sbjct: 91 VPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSI----QREGVPSVD-EIKDPVERLAIAT 145
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
SHPVW+V+ WT G E A K+ N P + R N K VT + + L ++
Sbjct: 146 --SHPVWLVQEWTAAYGLETAEKMCEVNMLPPVPTARVNVDK-VTVEEAIELLASEGIEA 202
Query: 286 PH-ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 344
+LS D+ I+++ G NV K+G ++QDES+ LV ++P G +++D CA
Sbjct: 203 KRGDLS---DDAIQIERG--NVAHTEAFKKGFLSIQDESSMLVARALEPNTGDAVLDSCA 257
Query: 345 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-S 403
APGGKT ++A L G G V ++D++ ++R++ + A+ + +V T D R ++ +
Sbjct: 258 APGGKTTHIAERLKGTGKVMSLDLHAHKVRLIKQQAERLGLENV-ETKALDARKVQEHFA 316
Query: 404 TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463
DK+L+DAPCSG GV+ ++ D++ + D E L +Q +L+ + L+K GG LVY
Sbjct: 317 NETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSERLSTIQLAILEKIAPLLKQGGRLVY 376
Query: 464 STCSIDPEENEERVEAFLLRHPEFSID 490
STC+I+ ENE+ ++ FL HPEF D
Sbjct: 377 STCTIEKIENEQVIDKFLKEHPEFEWD 403
>gi|414564619|ref|YP_006043580.1| ribosomal RNA small subunit methyltransferase [Streptococcus equi
subsp. zooepidemicus ATCC 35246]
gi|338847684|gb|AEJ25896.1| ribosomal RNA small subunit methyltransferase [Streptococcus equi
subsp. zooepidemicus ATCC 35246]
Length = 442
Score = 196 bits (497), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 143/430 (33%), Positives = 226/430 (52%), Gaps = 41/430 (9%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L D+D LVT+IV GTI + L+ L H + ++ + +L + Y++ LD
Sbjct: 42 LSDKDKALVTEIVYGTISRKITLE---WYLAHYIEDRDRLDKWVYYLLMLSLYQLAYLDK 98
Query: 166 MPPYAVVDENVRLAKV-ALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P +A+V++ V LAK A GA LVN +LR+L + PLP ++ R + + A
Sbjct: 99 VPAHAIVNDAVNLAKARAHGRGADKLVNAVLRQL------TNKPLPDIKSIKR-KNKYYA 151
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQ 284
YS PVW+V++ G+E A+ +M SL SR + DL +L+ +K
Sbjct: 152 VAYSVPVWLVKKLIDQFGEERAVAIME--------SLFVRSRASIRVTDLT-KLDEIKQA 202
Query: 285 VPHELSLHLDEFIRVKTGLQ----NVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIV 340
E SL +TGL N + G +QDE++ LV +D Q + I+
Sbjct: 203 TGSEQSL------LARTGLTKRAGNFAASSYFINGDITIQDETSQLVAPTLDIQGQEMIL 256
Query: 341 DCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT-- 398
D C+APGGKT ++AS L+ G V A+D+ + +L ++NE K V I T D R
Sbjct: 257 DACSAPGGKTAHIASYLTS-GKVVALDLYEHKLALVNENVKRLGVADRIETKVLDAREVH 315
Query: 399 --FADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVK 456
FA NS DK+L+DAPCSG+G++ ++ D+++N+ +D ++L+ +Q E+L + ++
Sbjct: 316 KHFAKNS---FDKILVDAPCSGIGLIRRKPDIKYNKEGQDFQQLQEIQLEILSSVCQTLR 372
Query: 457 PGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSL 516
GG++ YSTC+I EEN + ++ FL RHP F +D V K G P ++
Sbjct: 373 KGGIITYSTCTIFDEENFQVIDKFLQRHPNFE-QVTLKHAQADIV-KDGCLMITPEQYQT 430
Query: 517 DGAFAARLVR 526
DG F ++ R
Sbjct: 431 DGFFIGQVRR 440
>gi|428178413|gb|EKX47288.1| hypothetical protein GUITHDRAFT_157619 [Guillardia theta CCMP2712]
Length = 367
Score = 196 bits (497), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 132/376 (35%), Positives = 199/376 (52%), Gaps = 19/376 (5%)
Query: 114 LVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVV 172
+ ++++ G IRW+ LDHL+ +K + + ILR+G Y++ +D +P +A+V
Sbjct: 1 MTSELIYGCIRWKALLDHLVARRQDGKK---RQKAAVQVILRMGLYQLFFMDRVPSHALV 57
Query: 173 DENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVW 232
E V LAK GA VN LR+ V + + +L+ N L +SHP W
Sbjct: 58 SECVNLAKSRGAAGAAGFVNAFLRQYVREQAETQELIAELQENK------LHIGWSHPDW 111
Query: 233 MVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRK--GVTRADLVMQ--LNLLKLQVPHE 288
+V W K G+E A +L+ WNNS R N K G T L + +QV
Sbjct: 112 LVNEWVKRYGKEGAQRLLSWNNSPAPIFARINRLKSTGPTVRKLWEHEPITFRDVQVDWC 171
Query: 289 LSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGG 348
S L E I+V + ++ K GL VQD S L V V+DPQPG+SI+D C+APGG
Sbjct: 172 DSEDLAE-IKVSAPVHSL---DSFKRGLFYVQDPSTLLSVKVLDPQPGESILDLCSAPGG 227
Query: 349 KTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSV-IRTIHADLRTFADNSTVKC 407
K+ Y+A + +G + A DI++ RL ++ E ++ + + + A A +
Sbjct: 228 KSCYIAQRMEDKGKLIASDIDELRLNVVRENSERLGITCLETQPASAIDHILAGEQPMTF 287
Query: 408 DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467
D++L+DAPCS GV+ +R D+RW ++ +L Q LL A+ VK GG++VYSTCS
Sbjct: 288 DRILIDAPCSNSGVIRRRIDVRWRISKAEIAQLHETQFGLLMKAAKAVKKGGIIVYSTCS 347
Query: 468 IDPEENEERVEAFLLR 483
++PEENE + FL R
Sbjct: 348 LEPEENEHVIRRFLKR 363
>gi|449094266|ref|YP_007426757.1| RNA-binding Sun protein; 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Bacillus subtilis
XF-1]
gi|449028181|gb|AGE63420.1| RNA-binding Sun protein; 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Bacillus subtilis
XF-1]
Length = 447
Score = 196 bits (497), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 118/391 (30%), Positives = 218/391 (55%), Gaps = 18/391 (4%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
++ +L D+D L+T++V GT++ + LD+++ + + ++P ++Q+LR+ Y++
Sbjct: 32 IKSNELSDQDRGLLTELVYGTLQNKIALDYMLKPFINKPQ---KVKPWVIQLLRLSLYQM 88
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
L+ +P A + E V +AK+ G + VNG+LR + +P + +
Sbjct: 89 EYLEKIPDRAAIHEAVEIAKIRGHKGIASFVNGVLRSI------QREGVPSFDAIEDP-V 141
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
R LAT SHP W+V+ W G E A K+ + P +LR N K RA+L+ Q+
Sbjct: 142 RRLATETSHPEWLVKEWVDAYGFEAAEKICRIHLIPPKQTLRVNQMKA-DRAELLDQMAA 200
Query: 281 LKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIV 340
++V E ++ +++ G + + G ++QDES+ LV +DP+ ++++
Sbjct: 201 EGIEV--EKGDLAEDAVKLLKG--TIAGTHFFQNGEVSIQDESSMLVARALDPKSDETVL 256
Query: 341 DCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 400
D CAAPGGK+ ++A + +G V ++D++K +++++ E A + ++I D R
Sbjct: 257 DACAAPGGKSAHIAELMKNKGSVTSLDLHKHKVKLIKEAADRLGL-TIIHAETMDARKAG 315
Query: 401 DN-STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGG 459
+ + D++L+DAPCSG GV+ ++ D+++ ++ +D L +Q +L + LVK GG
Sbjct: 316 ETFENEQFDRILVDAPCSGFGVIRRKPDMKYTKKPDDSARLAEIQLSILREIAPLVKKGG 375
Query: 460 VLVYSTCSIDPEENEERVEAFLLRHPEFSID 490
LVYSTC++D EN+E + AF+ HP+F D
Sbjct: 376 TLVYSTCTMDRTENDEVIHAFIQEHPDFEPD 406
>gi|163941603|ref|YP_001646487.1| sun protein [Bacillus weihenstephanensis KBAB4]
gi|423489041|ref|ZP_17465723.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BtB2-4]
gi|423494766|ref|ZP_17471410.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
CER057]
gi|423498442|ref|ZP_17475059.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
CER074]
gi|423592139|ref|ZP_17568170.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VD048]
gi|423598824|ref|ZP_17574824.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VD078]
gi|423661295|ref|ZP_17636464.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VDM022]
gi|423669439|ref|ZP_17644468.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VDM034]
gi|423674382|ref|ZP_17649321.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VDM062]
gi|163863800|gb|ABY44859.1| sun protein [Bacillus weihenstephanensis KBAB4]
gi|401150859|gb|EJQ58311.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
CER057]
gi|401160491|gb|EJQ67869.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
CER074]
gi|401232272|gb|EJR38774.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VD048]
gi|401237094|gb|EJR43551.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VD078]
gi|401298566|gb|EJS04166.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VDM034]
gi|401301336|gb|EJS06925.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VDM022]
gi|401309933|gb|EJS15266.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VDM062]
gi|402432289|gb|EJV64348.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BtB2-4]
Length = 444
Score = 196 bits (497), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 134/390 (34%), Positives = 213/390 (54%), Gaps = 28/390 (7%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+D +D+ L+T++V GTI+ R LD+ + +E + +LR+ Y+++ LD
Sbjct: 36 IDRKDIGLLTEMVYGTIQRRDTLDYYLQPFLR-----KKVEAWVRVLLRLSLYQMLYLDR 90
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A + E V +AK G +VNG+LR + +P LE + R LA
Sbjct: 91 VPERAAIHEAVEIAKRRGHKGISGMVNGVLRSI------QREGVPSLEEIENPVER-LAI 143
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
SHP+W+V+ W G E A K+ N P + R N K VT + V L ++
Sbjct: 144 ATSHPMWLVQEWASEYGLETAEKMCEVNMLPPVPTARVNVDK-VTVEEAVALLADEGIEA 202
Query: 286 PH-ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 344
ELS ++ I+++ G NV K+G ++QDES+ LV ++P G +++D CA
Sbjct: 203 KRGELS---EDAIQIERG--NVAHTEAFKKGFLSIQDESSMLVARALEPNKGDTVLDSCA 257
Query: 345 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT----FA 400
APGGKT ++A L G G V ++D++ ++R++ + AK + +V T+ D R FA
Sbjct: 258 APGGKTTHIAERLDGTGKVMSLDLHAHKVRLIEQQAKRLGLENV-ETMALDARKVQEHFA 316
Query: 401 DNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGV 460
+ S DK+L+DAPCSG GV+ ++ D++ + D E L +Q +L+ + L+K GG
Sbjct: 317 NES---FDKILVDAPCSGFGVIRRKPDIKLGKDKGDSERLSTIQLAILEKIAPLLKQGGR 373
Query: 461 LVYSTCSIDPEENEERVEAFLLRHPEFSID 490
LVYSTC+I+ ENE+ ++ FL HPEF D
Sbjct: 374 LVYSTCTIEKIENEQVIKQFLQEHPEFEWD 403
>gi|407706324|ref|YP_006829909.1| transition state regulatory protein AbrB [Bacillus thuringiensis
MC28]
gi|407384009|gb|AFU14510.1| sun protein [Bacillus thuringiensis MC28]
Length = 444
Score = 196 bits (497), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 131/388 (33%), Positives = 212/388 (54%), Gaps = 24/388 (6%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+D +D+ L+T+IV GTI+ R LD+ + +E + +LR+ Y+++ LD
Sbjct: 36 IDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLK-----KKVEAWVRVLLRLSLYQMIYLDR 90
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKL-EGNDRAQARALA 224
+P A + E V +AK G +VNG+LR + +P L E D + A+A
Sbjct: 91 VPERAAIHEAVEIAKRRGHKGISGMVNGVLRSI------QREGVPSLDEIKDPVERLAIA 144
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQ 284
T SHPVW+V+ W G E A K+ N P + R N V + + + LL +
Sbjct: 145 T--SHPVWLVQDWASEYGLETAEKMCEVNMLPPVPTARVN----VDKVTVEEAIELLASE 198
Query: 285 VPHELSLHL-DEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCC 343
S L D+ I+++ G NV K+G ++QDES+ LV ++P G++++D C
Sbjct: 199 GIEAKSGDLSDDAIQIERG--NVAHTEAFKKGFLSIQDESSMLVARALEPNEGETVLDSC 256
Query: 344 AAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN- 402
AAPGGKT ++A L G G V ++D++ ++R++ + A+ + + I T D R ++
Sbjct: 257 AAPGGKTTHIAERLKGTGKVMSLDLHAHKVRLIKQQAERLGLEN-IETKALDARKVQEHF 315
Query: 403 STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLV 462
+ DK+L+DAPCSG GV+ ++ D++ + D E L +Q +L+ + L+K GG LV
Sbjct: 316 ANETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSERLSTIQLAILEKIAPLLKQGGRLV 375
Query: 463 YSTCSIDPEENEERVEAFLLRHPEFSID 490
YSTC+I+ ENE+ ++ FL HPEF D
Sbjct: 376 YSTCTIEKIENEQVIDKFLKEHPEFEWD 403
>gi|195978660|ref|YP_002123904.1| 16S rRNA m(5)C 967 methyltransferase RsmB [Streptococcus equi
subsp. zooepidemicus MGCS10565]
gi|195975365|gb|ACG62891.1| 16S rRNA m(5)C 967 methyltransferase RsmB [Streptococcus equi
subsp. zooepidemicus MGCS10565]
Length = 442
Score = 196 bits (497), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 143/432 (33%), Positives = 227/432 (52%), Gaps = 41/432 (9%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
+ L D+D LVT+IV GTI + L+ L H + ++ + +L + Y++ L
Sbjct: 40 QSLSDKDKALVTEIVYGTISRKITLE---WYLAHYIEDRDRLDKWVYYLLMLSLYQLAYL 96
Query: 165 D-MPPYAVVDENVRLAKV-ALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARA 222
D +P +A+V++ V LAK A GA LVN +LR+L + PLP ++ R + +
Sbjct: 97 DKVPAHAIVNDAVNLAKARAHGRGADKLVNAVLRQL------TNKPLPDIKSIKR-KNKY 149
Query: 223 LATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLK 282
A YS PVW+V++ G+E A+ +M SL SR + DL +L+ +K
Sbjct: 150 YAVAYSVPVWLVKKLIDQFGEERAVAIME--------SLFVRSRASIRVTDLT-KLDEIK 200
Query: 283 LQVPHELSLHLDEFIRVKTGLQ----NVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQS 338
E SL +TGL N + G +QDE++ LV +D Q +
Sbjct: 201 QATGSEQSL------LARTGLTKRAGNFAASSYFINGDITIQDETSQLVAPTLDIQGQEM 254
Query: 339 IVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT 398
I+D C+APGGKT ++AS L+ G V A+D+ + +L ++NE AK V T D R
Sbjct: 255 ILDACSAPGGKTAHIASYLTS-GKVVALDLYEHKLALVNENAKRLGVADRTETKVLDARE 313
Query: 399 ----FADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLL 454
FA NS DK+L+DAPCSG+G++ ++ D+++N+ +D ++L+ +Q E+L +
Sbjct: 314 VHKHFAKNS---FDKILVDAPCSGIGLIRRKPDIKYNKEGQDFQQLQEIQLEILSSVCQT 370
Query: 455 VKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKH 514
++ GG++ YSTC+I EEN + ++ FL RHP F +D V K G P ++
Sbjct: 371 LRKGGIITYSTCTIFDEENFQVIDKFLQRHPNFE-QVTLKHAQADIV-KDGCLMITPEQY 428
Query: 515 SLDGAFAARLVR 526
DG F ++ R
Sbjct: 429 QTDGFFIGQVRR 440
>gi|430759003|ref|YP_007209724.1| ribosomal RNA small subunit methyltransferase B [Bacillus subtilis
subsp. subtilis str. BSP1]
gi|430023523|gb|AGA24129.1| Ribosomal RNA small subunit methyltransferase B [Bacillus subtilis
subsp. subtilis str. BSP1]
Length = 447
Score = 196 bits (497), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 118/391 (30%), Positives = 218/391 (55%), Gaps = 18/391 (4%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
++ +L D+D L+T++V GT++ + LD+++ + + ++P ++Q+LR+ Y++
Sbjct: 32 IKSNELSDQDRGLLTELVYGTLQNKIALDYMLKPFINKPQ---KVKPWVIQLLRLSLYQM 88
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
L+ +P A + E V +AK+ G + VNG+LR + +P + +
Sbjct: 89 EYLEKIPDRAAIHEAVEIAKIRGHKGIASFVNGVLRSI------QREGVPSFDAIEDP-V 141
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
R LAT SHP W+V+ W G E A K+ + P +LR N K RA+L+ Q+
Sbjct: 142 RRLATETSHPEWLVKEWADAYGFEAAEKICRIHLIPPKQTLRVNQMKA-DRAELLDQMAA 200
Query: 281 LKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIV 340
++V E ++ +++ G + + G ++QDES+ LV +DP+ ++++
Sbjct: 201 EGIEV--EKGDLAEDAVKLLKG--TIAGTHFFQNGEVSIQDESSMLVARALDPKSDETVL 256
Query: 341 DCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 400
D CAAPGGK+ ++A + +G V ++D++K +++++ E A + ++I D R
Sbjct: 257 DACAAPGGKSAHIAELMKNKGSVTSLDLHKHKVKLIKEAADRLGL-TIIHAETMDARKAG 315
Query: 401 DN-STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGG 459
+ + D++L+DAPCSG GV+ ++ D+++ ++ +D L +Q +L + LVK GG
Sbjct: 316 ETFENEQFDRILVDAPCSGFGVIRRKPDMKYTKKPDDSARLAEIQLSILREIAPLVKKGG 375
Query: 460 VLVYSTCSIDPEENEERVEAFLLRHPEFSID 490
LVYSTC++D EN+E + AF+ HP+F D
Sbjct: 376 TLVYSTCTMDRTENDEVIHAFIQEHPDFEPD 406
>gi|302874750|ref|YP_003843383.1| sun protein [Clostridium cellulovorans 743B]
gi|307690635|ref|ZP_07633081.1| sun protein [Clostridium cellulovorans 743B]
gi|302577607|gb|ADL51619.1| sun protein [Clostridium cellulovorans 743B]
Length = 443
Score = 196 bits (497), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 142/442 (32%), Positives = 230/442 (52%), Gaps = 23/442 (5%)
Query: 91 NEMGYVERTLG--FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEP 148
NE GY + +L++ D LVT+IV GTI+++ +D +I + SS++
Sbjct: 17 NERGYSNIIINKELNKSNLENIDKALVTEIVYGTIQYKYTIDKIIDHFVG--RGTSSVDK 74
Query: 149 LLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSL 207
++ ILR Y+I LD +P +AVV+E V L+K + +NG+LR + + N
Sbjct: 75 KVVNILRSAIYQIRYLDKIPSFAVVNEAVELSKKLSTVTSSKFINGVLRNYIRKTNENFY 134
Query: 208 PLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRK 267
N L+ YS WMV+++ G A K++ N PS ++R NS K
Sbjct: 135 -------NKNNLVDRLSFEYSFEPWMVKKFISQYGNNIAEKILKGLNERPSITVRVNSLK 187
Query: 268 GVTRADLVMQLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLV 327
T + +L L V E + E IR+ G +++ L +G VQDESA +V
Sbjct: 188 -TTFDEAYEELEALGYSV--EEGVIAPEAIRILKG-KSIENNPLFIKGSITVQDESAMIV 243
Query: 328 VAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNS 387
+ ++P I D C+APGGKT ++A + + A DI +L+++ E K + S
Sbjct: 244 ASALEPSKDDVIFDMCSAPGGKTTHIAELSEDKSKIKAFDIFDHKLKLIEENIKRLGITS 303
Query: 388 VIRTIH-ADLR-TFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQD 445
+ I A + D+S DKVL+D PCSGLG++ K+ ++++ + +D++EL +Q
Sbjct: 304 IETEIKDASIHDVLLDDS---ADKVLIDVPCSGLGIMRKKPEIKYTKNEKDLKELVKIQR 360
Query: 446 ELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPAD-GLVPSDFVTKH 504
+++ A+ V+ GGVLVYSTC+++ EEN+E + FL RH +F ++ D G + K
Sbjct: 361 DIMRNAAKYVRKGGVLVYSTCTLNLEENQENIRWFLDRHEDFMVEKVDFGKGENLIYGKD 420
Query: 505 GFFFSDPIKHSLDGAFAARLVR 526
P K+ +DG F A+L R
Sbjct: 421 NTLTILPNKY-MDGFFIAKLKR 441
>gi|423518555|ref|ZP_17495036.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
HuA2-4]
gi|401160763|gb|EJQ68138.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
HuA2-4]
Length = 444
Score = 196 bits (497), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 134/390 (34%), Positives = 213/390 (54%), Gaps = 28/390 (7%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+D +D+ L+T++V GTI+ R LD+ + +E + +LR+ Y+++ LD
Sbjct: 36 IDRKDIGLLTEMVYGTIQRRDTLDYYLQPFLR-----KKVEAWVRVLLRLSLYQMLYLDR 90
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A + E V +AK G +VNG+LR + +P LE + R LA
Sbjct: 91 VPERAAIHEAVEIAKRRGHKGISGMVNGVLRSI------QREGVPSLEEIENPVER-LAI 143
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
SHP+W+V+ W G E A K+ N P + R N K VT + V L ++
Sbjct: 144 ATSHPMWLVQEWASEYGLETAEKMCEVNMLPPVPTARVNVDK-VTVEEAVALLADEGIEA 202
Query: 286 PH-ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 344
ELS ++ I+++ G NV K+G ++QDES+ LV ++P G +++D CA
Sbjct: 203 KRGELS---EDAIQIERG--NVAHTEAFKKGFLSIQDESSMLVARALEPNKGDTVLDSCA 257
Query: 345 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT----FA 400
APGGKT ++A L G G V ++D++ ++R++ + AK + +V T+ D R FA
Sbjct: 258 APGGKTTHIAERLDGTGKVMSLDLHAHKVRLIEQQAKRLGLENV-ETMALDARKVQEHFA 316
Query: 401 DNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGV 460
+ S DK+L+DAPCSG GV+ ++ D++ + D E L +Q +L+ + L+K GG
Sbjct: 317 NES---FDKILVDAPCSGFGVIRRKPDIKLGKGKGDSERLSTIQLAILEKIAPLLKQGGR 373
Query: 461 LVYSTCSIDPEENEERVEAFLLRHPEFSID 490
LVYSTC+I+ ENE+ ++ FL HPEF D
Sbjct: 374 LVYSTCTIEKIENEQVIKQFLQEHPEFEWD 403
>gi|423452834|ref|ZP_17429687.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG5X1-1]
gi|401139393|gb|EJQ46955.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG5X1-1]
Length = 444
Score = 196 bits (497), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 134/390 (34%), Positives = 213/390 (54%), Gaps = 28/390 (7%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+D +D+ L+T++V GTI+ R LD+ + +E + +LR+ Y+++ LD
Sbjct: 36 IDRKDIGLLTEMVYGTIQRRDTLDYYLQPFLR-----KKVEAWVRVLLRLSLYQMLYLDR 90
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A + E V +AK G +VNG+LR + +P LE + R LA
Sbjct: 91 VPERAAIHEAVEIAKRRGHKGISGMVNGVLRSI------QREGVPSLEEIENPVER-LAI 143
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
SHP+W+V+ W G E A K+ N P + R N K VT + V L ++
Sbjct: 144 ATSHPMWLVQEWASEYGLETAEKMCEVNMLPPVPTARVNVDK-VTVEEAVALLAEEGIEA 202
Query: 286 PH-ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 344
ELS ++ I+++ G NV K+G ++QDES+ LV ++P G +++D CA
Sbjct: 203 KRGELS---EDAIQIERG--NVAHTEAFKKGFLSIQDESSMLVARALEPNKGDAVLDSCA 257
Query: 345 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT----FA 400
APGGKT ++A L G G V ++D++ ++R++ + AK + +V T+ D R FA
Sbjct: 258 APGGKTTHIAERLDGTGKVMSLDLHVHKVRLIEQQAKRLGLENV-ETMALDARKVQEHFA 316
Query: 401 DNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGV 460
+ S DK+L+DAPCSG GV+ ++ D++ + D E L +Q +L+ + L+K GG
Sbjct: 317 NES---FDKILVDAPCSGFGVIRRKPDIKLGKDKGDSERLSTIQLAILEKIAPLLKQGGR 373
Query: 461 LVYSTCSIDPEENEERVEAFLLRHPEFSID 490
LVYSTC+I+ ENE+ ++ FL HPEF D
Sbjct: 374 LVYSTCTIEKIENEQVIKQFLQEHPEFEWD 403
>gi|423367909|ref|ZP_17345341.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VD142]
gi|423470079|ref|ZP_17446823.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG6O-2]
gi|401082770|gb|EJP91035.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VD142]
gi|402437331|gb|EJV69355.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG6O-2]
Length = 444
Score = 196 bits (497), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 134/390 (34%), Positives = 213/390 (54%), Gaps = 28/390 (7%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+D +D+ L+T++V GTI+ R LD+ + +E + +LR+ Y+++ LD
Sbjct: 36 IDRKDIGLLTEMVYGTIQRRDTLDYYLQPFLR-----KKVEAWVRVLLRLSLYQMLYLDR 90
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A + E V +AK G +VNG+LR + +P LE + R LA
Sbjct: 91 VPERAAIHEAVEIAKRRGHKGISGMVNGVLRSI------QREGVPSLEEIENPVER-LAI 143
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
SHP+W+V+ W G E A K+ N P + R N K VT + V L ++
Sbjct: 144 ATSHPMWLVQEWASEYGLETAEKMCEVNMLPPVPTARVNVDK-VTVEEAVALLADEGIEA 202
Query: 286 PH-ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 344
ELS ++ I+++ G NV K+G ++QDES+ LV ++P G +++D CA
Sbjct: 203 KRGELS---EDAIQIERG--NVAHTEAFKKGFLSIQDESSMLVARALEPNKGDAVLDSCA 257
Query: 345 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT----FA 400
APGGKT ++A L G G V ++D++ ++R++ + AK + +V T+ D R FA
Sbjct: 258 APGGKTTHIAERLDGTGKVMSLDLHAHKVRLIEQQAKRLGLENV-ETMALDARKVQEHFA 316
Query: 401 DNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGV 460
+ S DK+L+DAPCSG GV+ ++ D++ + D E L +Q +L+ + L+K GG
Sbjct: 317 NES---FDKILVDAPCSGFGVIRRKPDIKLGKDKGDSERLSTIQLAILEKIAPLLKQGGR 373
Query: 461 LVYSTCSIDPEENEERVEAFLLRHPEFSID 490
LVYSTC+I+ ENE+ ++ FL HPEF D
Sbjct: 374 LVYSTCTIEKIENEQVIKQFLQEHPEFEWD 403
>gi|160915468|ref|ZP_02077679.1| hypothetical protein EUBDOL_01476 [Eubacterium dolichum DSM 3991]
gi|158432588|gb|EDP10877.1| ribosomal RNA small subunit methyltransferase B [Eubacterium
dolichum DSM 3991]
Length = 415
Score = 195 bits (496), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 134/436 (30%), Positives = 224/436 (51%), Gaps = 44/436 (10%)
Query: 94 GYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPL--LL 151
GY L + + +D +D LVT IV GT++ R L+ + +++ EP +
Sbjct: 19 GYSNLLLRNKLQSVDPKDKALVTQIVYGTLQNYR-------LVRYQWQSYVKKEPCKEVA 71
Query: 152 QILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLP 210
+L + Y+++ +D MP YAV+DE VR+ K + P LVN +LR++ + N
Sbjct: 72 LLLDMSVYQLLYMDKMPAYAVIDEAVRITKKNIHPRFSALVNAVLRQV----ERNGKR-- 125
Query: 211 KLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVT 270
+LEGN Q LA SHP W+V W G +E K+ + +R N+ K
Sbjct: 126 ELEGNAIEQ---LALETSHPTWLVAMWKAQYGWQECEKICHSDLEIRKQCVRVNTMKASV 182
Query: 271 RADLVMQLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAV 330
+L+ +K + +L ++I + K+GL ++QDE++ LV
Sbjct: 183 E-ELLASGEFVKGNLAEHALYYLGN---------DIIHSNYYKQGLVSIQDEASQLVAQY 232
Query: 331 VDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIR 390
VDPQP + I+D C+APG K ++A + +G + DI+ R+ ++ A+ Q+ S+
Sbjct: 233 VDPQPQERILDVCSAPGTKACHIAERMGDKGSIVCGDIHAHRVELIKNGARRLQLQSIQA 292
Query: 391 TIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDA 450
+ D + + D+VL D PCSG GVL++++D++++ + DM+ L LQ ++L +
Sbjct: 293 QV-MDATSLKEIEGEMFDRVLCDVPCSGYGVLARKSDIKYHAKSTDMDTLIPLQQQILQS 351
Query: 451 ASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSD 510
AS V G+LVYSTC+++ +ENE++V AFL +H EF + + + F
Sbjct: 352 ASKHVVKDGILVYSTCTLNKKENEKQVAAFLAQHEEF-----------ECLQQQTIF--- 397
Query: 511 PIKHSLDGAFAARLVR 526
P H DG + A+L R
Sbjct: 398 PYTHHSDGFYIAKLKR 413
>gi|294500982|ref|YP_003564682.1| ribosomal RNA small subunit methyltransferase B [Bacillus
megaterium QM B1551]
gi|294350919|gb|ADE71248.1| ribosomal RNA small subunit methyltransferase B [Bacillus
megaterium QM B1551]
Length = 446
Score = 195 bits (496), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 121/390 (31%), Positives = 212/390 (54%), Gaps = 16/390 (4%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
+ + + +D L+T+IV GTI+ R LD+ + + K ++P + +LR+ Y++
Sbjct: 32 IQKRGIQGKDAGLLTEIVYGTIQRRDTLDYGLAPFLKNPK---KLQPWVRVLLRLSLYQM 88
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
V LD +P A++ E V +AK G ++VNG+LR + P LE
Sbjct: 89 VYLDRVPDRAILHEAVEIAKKRGHKGIASMVNGVLRNI------QRSGTPSLEEIQNPVE 142
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
R LA SHP+W+V+RW + G ++ + + N P ++R NS + ++ L
Sbjct: 143 R-LAIETSHPLWLVKRWVEQYGLDKTRGICLANLMAPKQTIRVNSARFTQNE---VKEAL 198
Query: 281 LKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIV 340
K + E ++E + V+ G N +EG+ VQDES+ LV + + + I+
Sbjct: 199 EKEGIVVEPGHFVEEALEVQKG--NAAHTQAFREGMFTVQDESSMLVAHALSAEAEELIL 256
Query: 341 DCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 400
D CAAPGGK+ ++A L G V ++DI+ +++++ + A+ + ++ T+ +
Sbjct: 257 DSCAAPGGKSTHIAEQLKNSGKVISLDIHDHKVKLIAQQAERLHLTNIEPTVQDSRKAGE 316
Query: 401 DNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGV 460
D++L+DAPCSG GV+ ++ DL++ + +D+++L +Q ++L+A + L+K GG
Sbjct: 317 QFDKEMFDRILVDAPCSGFGVMRRKPDLKYTKTEQDVKQLARIQQDILNAVAPLLKKGGT 376
Query: 461 LVYSTCSIDPEENEERVEAFLLRHPEFSID 490
LVYSTC+ID +EN + V AFL H +F D
Sbjct: 377 LVYSTCTIDRDENGDVVAAFLTDHADFQKD 406
>gi|440780883|ref|ZP_20959354.1| 16S rRNA methyltransferase B [Clostridium pasteurianum DSM 525]
gi|440221471|gb|ELP60676.1| 16S rRNA methyltransferase B [Clostridium pasteurianum DSM 525]
Length = 443
Score = 195 bits (496), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 132/421 (31%), Positives = 225/421 (53%), Gaps = 17/421 (4%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD 165
+L+ +D LVT+IV GT++++ +D ++ K S++ +L ILR Y++ LD
Sbjct: 34 NLEAKDRALVTEIVYGTLKYKYTIDKILSNFIR--KDLKSIDIYVLNILRSSIYQMRYLD 91
Query: 166 -MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P +A V+E V++ K G VN +LR + K+ N E +D + L+
Sbjct: 92 KIPEFAAVNEAVQIVKKKKGVGVSKFVNAVLRNYIRSKNVN------FEKDDD-EIHKLS 144
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQ 284
YS WMV + K G E AI +M N S+R N K D + + LL+
Sbjct: 145 FQYSFEPWMVELFVKQYGIEMAISIMEGLNEVAYISVRVNLLK--ENYDNIFNI-LLEGN 201
Query: 285 VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 344
E E I + G N+ Q L K+G VQDESA LV + ++ +I+D C+
Sbjct: 202 FNIEKGYINKEAINIIKG-GNIEQNNLFKDGFITVQDESAMLVASSMEISNNMTILDLCS 260
Query: 345 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNST 404
APGGKT ++ L+ G V A D++ +LR++ ++A+ + ++I + D R + D
Sbjct: 261 APGGKTTHICEILNNTGEVKAFDLHANKLRLIKKSAERLGIKNLICS-EMDARKYDDKYK 319
Query: 405 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464
+VL+D PCSGLG++ K+ +++WN+ ++D++ + Q ++ A+ VK GG L+YS
Sbjct: 320 KIAHRVLIDVPCSGLGIIKKKPEIKWNKSIKDLKNIVKTQRSIMMNAAEYVKYGGYLIYS 379
Query: 465 TCSIDPEENEERVEAFLLRHPEFSIDP-ADGLVPSDFVTKHGFFFSDPIKHSLDGAFAAR 523
TC+++ EENE+ ++ FL + ++ ++P G + +K G+ P K+ +DG F +
Sbjct: 380 TCTLNSEENEKNIQWFLDNNLKYKVEPLYFGNYDNIIYSKEGWVTIIPNKY-MDGFFICK 438
Query: 524 L 524
L
Sbjct: 439 L 439
>gi|253580147|ref|ZP_04857414.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251848666|gb|EES76629.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 450
Score = 195 bits (496), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 142/434 (32%), Positives = 226/434 (52%), Gaps = 51/434 (11%)
Query: 114 LVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVV 172
+T + GT+ +R +D++I + + + M+P++ +ILR Y+I +D +P AV
Sbjct: 46 FITRVCEGTLEYRILIDYIID--SYSKVSVDKMKPVIREILRSAVYQIRFMDSVPDSAVC 103
Query: 173 DENVRLAK----VALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYS 228
+E V+LA+ +L+P VNG+LR + ++ +L LP E N R L+ YS
Sbjct: 104 NEAVKLAQRKGFYSLKP----FVNGVLRTIA--REWKNLKLPSREEN---PVRYLSVRYS 154
Query: 229 HPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRA---DLVMQLNLLK--- 282
P +V RW + G+E+ K++ ++ ++R + K + LV Q +K
Sbjct: 155 MPETLVNRWLEDYGEEKTEKILTDFLTEKPITVRCRTHKYPQKEIYESLVDQGVEVKPAP 214
Query: 283 -LQVPHELS-----LHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPG 336
L +E+S L LD FI +G VQD S+ LV + DPQ G
Sbjct: 215 YLPYAYEISNYNHILALDAFI----------------QGKIQVQDVSSMLVAEIADPQKG 258
Query: 337 QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHA-D 395
++D CAAPGGK+L++A + G V A DI++ ++ ++ E +H+ + + H D
Sbjct: 259 DYVIDMCAAPGGKSLHVADKMGDYGTVDARDISQYKVDMIEEN--IHRTDCINVQAHVMD 316
Query: 396 LRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLV 455
F +S +K D VL D PCSG GV+ K+ ++++ + EE+ ILQ +LD A+ V
Sbjct: 317 ATVFDVDSELKADVVLADVPCSGYGVIGKKPEIKYRVTAQKQEEIVILQRTILDNAAEYV 376
Query: 456 KPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDF---VTKHGFFFSDPI 512
KPGGVLV+STC+I EENEE + F+ HP F ++ D +P + T G+ P
Sbjct: 377 KPGGVLVFSTCTIAKEENEENMLWFMNNHP-FKLESIDPYLPEELHSETTALGYLQLLPG 435
Query: 513 KHSLDGAFAARLVR 526
H DG F A+ R
Sbjct: 436 VHKTDGFFIAKFRR 449
>gi|258645366|ref|ZP_05732835.1| ribosomal RNA small subunit methyltransferase B [Dialister invisus
DSM 15470]
gi|260402715|gb|EEW96262.1| ribosomal RNA small subunit methyltransferase B [Dialister invisus
DSM 15470]
Length = 454
Score = 195 bits (495), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 135/429 (31%), Positives = 225/429 (52%), Gaps = 35/429 (8%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L + L+T+++ G R Y +I L+ ++ + P + +L +G Y+IV LD
Sbjct: 43 LKKEERHLLTELIYGVCRKYNYCLWMISLI--SDRPMFKIHPAVRILLALGIYQIVFLDR 100
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARAL-- 223
+P A V+E V++AK G +NG+LR L+ SL LP DR R
Sbjct: 101 IPESAAVNETVKIAKKVTHIGNVKFINGVLRNF--LRRRGSLTLP-----DRTSNRVFYE 153
Query: 224 ATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKL 283
+ IY+ P W++R + K G ++ K++ N+ +R N+ K + D+ QL L +
Sbjct: 154 SLIYNQPEWLIRFFEKEYGMGQSEKILKAFNTISDTCIRVNTLK-IETDDIKKQLKLRNI 212
Query: 284 QVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCC 343
V ++S ++ E + +K G +++ + L+ GL +Q S+ + V+ P G ++D C
Sbjct: 213 SV-GDIS-YMPEALAIKAG-TDILFSEFLQTGLIYIQTASSMIPAKVLGPDAGDHVLDMC 269
Query: 344 AAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS 403
AAPG KT ++A+ + +G + A D+ +++++ + AK I IH ++R
Sbjct: 270 AAPGSKTTHIAALMGNRGSIDAWDVYPHKVKLIKDNAK----RLGISIIHTEVR-----D 320
Query: 404 TVK--------CDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLV 455
+VK DKVLLDAPCSGLGVL + +LRW R+ D+ LQ +L++ A+
Sbjct: 321 SVKPLPFLYETYDKVLLDAPCSGLGVLGHKVELRWRRKESDLSVFPPLQKQLIEQAAKYT 380
Query: 456 KPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHS 515
K GGVLVYSTC+++P+ENE + FL H EF+ + + V + + D ++
Sbjct: 381 KTGGVLVYSTCTLNPDENEHIINEFLSLHSEFAPEEFNFPVLGKSLNGMMTLYPDLVRS- 439
Query: 516 LDGAFAARL 524
DG F A+L
Sbjct: 440 -DGFFVAKL 447
>gi|152976231|ref|YP_001375748.1| sun protein [Bacillus cytotoxicus NVH 391-98]
gi|152024983|gb|ABS22753.1| sun protein [Bacillus cytotoxicus NVH 391-98]
Length = 444
Score = 195 bits (495), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 138/426 (32%), Positives = 222/426 (52%), Gaps = 38/426 (8%)
Query: 68 LMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRR 127
LM+++ GA+++LL +E++ + +D+ L+T+IV GTI+ R
Sbjct: 13 LMQVEKSGAYSNLLLNH----------LIEKST------IHKKDIGLLTEIVYGTIQRRD 56
Query: 128 YLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPG 186
LD+ + ++ + +LR+ Y+++ LD +P A + E V +AK G
Sbjct: 57 TLDYYLQPFLR-----KKVDAWVRVLLRLSLYQMLYLDRVPERAAIHEAVEIAKRRGHKG 111
Query: 187 AGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEA 246
+VNG+LR + +P L+ R LA SHP W+V+ W G E A
Sbjct: 112 IAGMVNGVLRSI------QREGVPSLDELKDPVER-LAIAMSHPTWLVQEWVAAYGLETA 164
Query: 247 IKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPH-ELSLHLDEFIRVKTGLQN 305
K+ N P + R N K +T + + LN ++ +LS D+ I+++ G N
Sbjct: 165 EKMCEVNMLPPVPTARVNVDK-ITVEEAIDLLNQEGVEAKRGDLS---DDAIQIEKG--N 218
Query: 306 VIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYA 365
V ++G ++QDES+ LV V+P G I+D CAAPGGKT +MA L G G V +
Sbjct: 219 VAHTEAFQKGFLSIQDESSMLVARAVEPSKGDMILDSCAAPGGKTTHMAERLRGTGKVMS 278
Query: 366 IDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVKCDKVLLDAPCSGLGVLSK 424
+D++ ++R++ + A + +V T D R ++ DK+L+DAPCSG GV+ +
Sbjct: 279 LDLHDHKVRLIKQQANRLGLENV-ETKALDARKVQEHFQNESFDKILVDAPCSGFGVIRR 337
Query: 425 RADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRH 484
+ D++ + D E L +Q +LD + L+K GG LVYSTC+I+ ENE+ V FL +H
Sbjct: 338 KPDIKLGKEKGDSERLSTIQQTILDKVAPLLKTGGRLVYSTCTIEKIENEQVVANFLQKH 397
Query: 485 PEFSID 490
PEF D
Sbjct: 398 PEFEWD 403
>gi|206976730|ref|ZP_03237634.1| sun protein [Bacillus cereus H3081.97]
gi|206745040|gb|EDZ56443.1| sun protein [Bacillus cereus H3081.97]
Length = 444
Score = 195 bits (495), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 129/386 (33%), Positives = 208/386 (53%), Gaps = 20/386 (5%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+D +D+ L+T+IV GTI+ R LD+ + +E + +LR+ Y+++ LD
Sbjct: 36 IDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLK-----KKVEAWVRVLLRLSLYQMIYLDR 90
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A + E V +AK G +VNG+LR + +P E D + A+AT
Sbjct: 91 VPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSI----QREGVPSVD-EIKDPVERLAIAT 145
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
SHP+W+V+ WT G E A K+ N P + R N K + + +
Sbjct: 146 --SHPIWLVQEWTSEYGLETAEKMCEVNMLPPVPTARVNVDKITVEGAITLLASEGIEAK 203
Query: 286 PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAA 345
+LS D+ I+++ G NV K+G ++QDES+ LV ++P G ++D CAA
Sbjct: 204 RGDLS---DDAIQIEKG--NVAHTDAFKKGFLSIQDESSMLVARALEPDEGDVVLDSCAA 258
Query: 346 PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-ST 404
PGGKT ++A L G G V ++D++ ++R++ + A+ + +V T D R ++ +
Sbjct: 259 PGGKTTHIAERLKGTGQVMSLDLHAHKVRLIKQQAERLGLGNV-ETKALDARKVQEHFAN 317
Query: 405 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464
DK+L+DAPCSG GV+ ++ D++ + D E L +Q +L+ + L+K GG LVYS
Sbjct: 318 ETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSERLSTIQLAILEKIAPLLKQGGRLVYS 377
Query: 465 TCSIDPEENEERVEAFLLRHPEFSID 490
TC+I+ ENE+ +E FL HPEF D
Sbjct: 378 TCTIEKIENEQVIERFLQEHPEFEWD 403
>gi|229013049|ref|ZP_04170214.1| Ribosomal RNA small subunit methyltransferase B [Bacillus mycoides
DSM 2048]
gi|228748303|gb|EEL98163.1| Ribosomal RNA small subunit methyltransferase B [Bacillus mycoides
DSM 2048]
Length = 415
Score = 195 bits (495), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 134/390 (34%), Positives = 213/390 (54%), Gaps = 28/390 (7%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+D +D+ L+T++V GTI+ R LD+ + +E + +LR+ Y+++ LD
Sbjct: 7 IDRKDIGLLTEMVYGTIQRRDTLDYYLQPFLR-----KKVEAWVRVLLRLSLYQMLYLDR 61
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A + E V +AK G +VNG+LR + +P LE + R LA
Sbjct: 62 VPERAAIHEAVEIAKRRGHKGISGMVNGVLRSI------QREGVPSLEEIENPVER-LAI 114
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
SHP+W+V+ W G E A K+ N P + R N K VT + V L ++
Sbjct: 115 ATSHPMWLVQEWASEYGLETAEKMCEVNMLPPVPTARVNVDK-VTVEEAVALLADEGIEA 173
Query: 286 PH-ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 344
ELS ++ I+++ G NV K+G ++QDES+ LV ++P G +++D CA
Sbjct: 174 KRGELS---EDAIQIERG--NVAHTEAFKKGFLSIQDESSMLVARALEPNKGDTVLDSCA 228
Query: 345 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT----FA 400
APGGKT ++A L G G V ++D++ ++R++ + AK + +V T+ D R FA
Sbjct: 229 APGGKTTHIAERLDGTGKVMSLDLHAHKVRLIEQQAKRLGLENV-ETMALDARKVQEHFA 287
Query: 401 DNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGV 460
+ S DK+L+DAPCSG GV+ ++ D++ + D E L +Q +L+ + L+K GG
Sbjct: 288 NES---FDKILVDAPCSGSGVIRRKPDIKLGKDKGDSERLSTIQLAILEKIAPLLKQGGR 344
Query: 461 LVYSTCSIDPEENEERVEAFLLRHPEFSID 490
LVYSTC+I+ ENE+ ++ FL HPEF D
Sbjct: 345 LVYSTCTIEKIENEQVIKQFLQEHPEFEWD 374
>gi|295706330|ref|YP_003599405.1| ribosomal RNA small subunit methyltransferase B [Bacillus
megaterium DSM 319]
gi|294803989|gb|ADF41055.1| ribosomal RNA small subunit methyltransferase B [Bacillus
megaterium DSM 319]
Length = 446
Score = 195 bits (495), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 121/390 (31%), Positives = 212/390 (54%), Gaps = 16/390 (4%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
+ + + +D L+T+IV GTI+ R LD+ + + K ++P + +LR+ Y++
Sbjct: 32 IQKRGIQGKDAGLLTEIVYGTIQRRDTLDYGLAPFLKNPK---KLQPWVRVLLRLSLYQM 88
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
V LD +P A++ E V +AK G ++VNG+LR + P LE
Sbjct: 89 VYLDRVPDRAILHEAVEIAKKRGHKGIASMVNGVLRNI------QRSGTPSLEEIQNPVE 142
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
R LA SHP+W+V+RW + G ++ + + N P ++R NS + ++ L
Sbjct: 143 R-LAIETSHPLWLVKRWVEQYGLDKTRGICLANLMAPKQTIRVNSARFTQNE---VKEAL 198
Query: 281 LKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIV 340
K + E ++E + V+ G N +EG+ VQDES+ LV + + + I+
Sbjct: 199 EKEGIVVEPGHFVEEALEVQKG--NAAHTQAFREGMFTVQDESSMLVAHALGAEAEELIL 256
Query: 341 DCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 400
D CAAPGGK+ ++A L G V ++DI+ +++++ + A+ + ++ T+ +
Sbjct: 257 DSCAAPGGKSTHIAEQLRNSGKVISLDIHDHKVKLIAQQAERLHLTNIEPTVQDSRKAGE 316
Query: 401 DNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGV 460
D++L+DAPCSG GV+ ++ DL++ + +D+++L +Q ++L+A + L+K GG
Sbjct: 317 QFDKEMFDRILVDAPCSGFGVMRRKPDLKYTKTEQDIKQLARIQQDILNAVAPLLKKGGT 376
Query: 461 LVYSTCSIDPEENEERVEAFLLRHPEFSID 490
LVYSTC+ID +EN + V AFL H +F D
Sbjct: 377 LVYSTCTIDRDENGDVVAAFLADHADFQKD 406
>gi|425055273|ref|ZP_18458754.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium 505]
gi|403034215|gb|EJY45679.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium 505]
Length = 452
Score = 195 bits (495), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 144/466 (30%), Positives = 246/466 (52%), Gaps = 39/466 (8%)
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVG 120
R ++ + L R+ GGA+++LL NEM + +L+ +D+ L T+++
Sbjct: 13 RYMALLTLERVNKGGAYSNLLL--------NEM--------IKQSELNQKDVGLFTELIY 56
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLA 179
GTI +R L+ + L K ++ + +L + Y++ LD +P +A+++E V +A
Sbjct: 57 GTISHQRLLEFYVAPLIAKAK---KVDDWVKTLLYLSVYQLEFLDKVPAHAILNEAVEIA 113
Query: 180 KVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTK 239
KV PG G VNG+LR + P L+G R L+ S P+WM +R
Sbjct: 114 KVKGNPGTGKFVNGVLR------NYQRQGAPDLQGIADPIER-LSVKISLPLWMTKRLVD 166
Query: 240 YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFIRV 299
+G EE KL + S R ++R+ ++R + L + ++ E S I
Sbjct: 167 QIGYEETEKLGLSLYQPSHASARVDTRR-LSRNQAITVLQ--EEEITAEKSQVSPYGIVA 223
Query: 300 KTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCL-- 357
K G ++ + L +G+ +QDES+ LV + +P ++D CAAPGGKT ++AS L
Sbjct: 224 KKG--HLASSSLFHDGVMTIQDESSMLVAPSMQIEPEHHVLDACAAPGGKTTHIASFLDP 281
Query: 358 SGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVKCDKVLLDAPC 416
S G V A+D+++ +++++ E A V+S + D R + + D++L+DAPC
Sbjct: 282 SCGGEVIALDVHEHKVKLIEENATRLGVSSAVYAQKMDAREVSKQFEPEQFDRILVDAPC 341
Query: 417 SGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEER 476
SGLG+L ++ D+R+ ++ +++ L +Q E+L++ + +K G+L YSTC+I EEN++
Sbjct: 342 SGLGLLRRKPDIRYKKQPDELANLPKIQLEILESCAPALKSSGILTYSTCTILKEENQDV 401
Query: 477 VEAFLLRHPEFS-IDP-ADGLVPSDFVTKHGFFFSDPIKHSLDGAF 520
V AFL RHP+F ID D ++ S V K + P + DG F
Sbjct: 402 VSAFLERHPDFERIDVLTDPMLQSSIVEKMLTLY--PHQFYTDGFF 445
>gi|42782957|ref|NP_980204.1| sun protein [Bacillus cereus ATCC 10987]
gi|42738884|gb|AAS42812.1| sun protein [Bacillus cereus ATCC 10987]
Length = 444
Score = 195 bits (495), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 131/387 (33%), Positives = 211/387 (54%), Gaps = 22/387 (5%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+D +D+ L+T+IV GTI+ R LD+ + +E + +LR+ Y+++ LD
Sbjct: 36 IDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLK-----KKVEAWVRVLLRLSLYQMIYLDR 90
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A + E V +AK G +VNG+LR + +P E D + A+AT
Sbjct: 91 VPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSI----QREGVPSVD-EIKDPVERLAIAT 145
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
SHPVW+V+ W G E A K+ N P + R N K +T + + L ++
Sbjct: 146 --SHPVWLVQEWASEYGLETAEKMCEVNMLPPVPTARVNVDK-ITVEEAITLLASEGIEA 202
Query: 286 PH-ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 344
+LS D+ I+++ G NV K+G ++QDES+ LV ++P G ++D CA
Sbjct: 203 KRGDLS---DDAIQIEKG--NVAHTDAFKKGFLSIQDESSMLVARALEPDEGDVVLDSCA 257
Query: 345 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-S 403
APGGKT ++A L G G V ++D++ ++R++ + A+ + +V T D R ++ +
Sbjct: 258 APGGKTTHIAERLKGTGQVMSLDLHAHKVRLIKQQAERLGLGNV-ETKALDARKVQEHFA 316
Query: 404 TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463
DK+L+DAPCSG GV+ ++ D++ + D E L +Q +L+ + L+K GG LVY
Sbjct: 317 NETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSERLSTIQLAILEKIAPLLKQGGRLVY 376
Query: 464 STCSIDPEENEERVEAFLLRHPEFSID 490
STC+I+ ENE+ +E FL HPEF D
Sbjct: 377 STCTIEKIENEQVIERFLQEHPEFEWD 403
>gi|217961285|ref|YP_002339853.1| sun protein [Bacillus cereus AH187]
gi|222097310|ref|YP_002531367.1| sun protein [Bacillus cereus Q1]
gi|375285788|ref|YP_005106227.1| sun protein [Bacillus cereus NC7401]
gi|423353567|ref|ZP_17331194.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
IS075]
gi|423374338|ref|ZP_17351676.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
AND1407]
gi|423567240|ref|ZP_17543487.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
MSX-A12]
gi|217064955|gb|ACJ79205.1| sun protein [Bacillus cereus AH187]
gi|221241368|gb|ACM14078.1| sun protein [Bacillus cereus Q1]
gi|358354315|dbj|BAL19487.1| sun protein [Bacillus cereus NC7401]
gi|401089380|gb|EJP97551.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
IS075]
gi|401094250|gb|EJQ02332.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
AND1407]
gi|401214328|gb|EJR21058.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
MSX-A12]
Length = 444
Score = 194 bits (494), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 129/386 (33%), Positives = 208/386 (53%), Gaps = 20/386 (5%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+D +D+ L+T+IV GTI+ R LD+ + +E + +LR+ Y+++ LD
Sbjct: 36 IDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLK-----KKVEAWVRVLLRLSLYQMIYLDR 90
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A + E V +AK G +VNG+LR + +P E D + A+AT
Sbjct: 91 VPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSI----QREGVPSVD-EIKDPVERLAIAT 145
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
SHP+W+V+ WT G E A K+ N P + R N K + + +
Sbjct: 146 --SHPIWLVQEWTSEYGLETAEKMCEVNMLPPVPTARVNVDKITVEGAIALLASEGIEAK 203
Query: 286 PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAA 345
+LS D+ I+++ G NV K+G ++QDES+ LV ++P G ++D CAA
Sbjct: 204 RGDLS---DDAIQIEKG--NVAHTDAFKKGFLSIQDESSMLVARALEPDEGDVVLDSCAA 258
Query: 346 PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-ST 404
PGGKT ++A L G G V ++D++ ++R++ + A+ + +V T D R ++ +
Sbjct: 259 PGGKTTHIAERLKGTGQVMSLDLHAHKVRLIKQQAERLGLGNV-ETKALDARKVQEHFAN 317
Query: 405 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464
DK+L+DAPCSG GV+ ++ D++ + D E L +Q +L+ + L+K GG LVYS
Sbjct: 318 ETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSERLSTIQLAILEKIAPLLKQGGRLVYS 377
Query: 465 TCSIDPEENEERVEAFLLRHPEFSID 490
TC+I+ ENE+ +E FL HPEF D
Sbjct: 378 TCTIEKIENEQVIERFLQEHPEFEWD 403
>gi|418323824|ref|ZP_12935086.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
pettenkoferi VCU012]
gi|365229170|gb|EHM70333.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
pettenkoferi VCU012]
Length = 437
Score = 194 bits (494), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 132/419 (31%), Positives = 224/419 (53%), Gaps = 40/419 (9%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTF--SSMEPLLLQILRIGFYEIVK 163
DL D L+T+IV GT++ + LD+L+ K F + ++ + +L + Y+
Sbjct: 37 DLSQADKGLITEIVYGTLKRQYTLDYLL-------KPFIQTKLKRWVRILLWMSIYQYRY 89
Query: 164 LD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARA 222
LD +P +AV++E V +AK P G +VNGILR++ + LP P + + R
Sbjct: 90 LDRIPTHAVINEAVMIAKQRGGPHQGKIVNGILRQIT----RSELPDPMKIQDPK---RR 142
Query: 223 LATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLK 282
L+ YS P+W++ W Y G EE ++ + ++R N+ K ++ ++ V +L
Sbjct: 143 LSISYSLPMWVIEHWITYYGLEETERIAQSMLEHVAQTVRVNTAK-ISTSEAVQRLEEEG 201
Query: 283 LQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 342
V E LD + V G+ + + +EGL ++QD+S+ V +DPQ G I+D
Sbjct: 202 FTV--EEDAELDVCLHVNGGV--IANSDSFREGLISIQDKSSMFVAHYLDPQIGDHILDA 257
Query: 343 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVN-SVIRTIHADLRTFAD 401
C+APGGK ++ L G G V A DI++ ++ ++ E +H++ S ++ + D T
Sbjct: 258 CSAPGGKACHIGELLRGTGQVTATDIHQHKIALIQEN--IHKLGLSHVKAMQHDATTPYQ 315
Query: 402 NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVL 461
D++L+DAPCSGLGVL + ++++ + +D+ +L LQ E+L+ +KPGG L
Sbjct: 316 EM---YDRILVDAPCSGLGVLRHKPEIKYTQSWDDIHQLVDLQLEILENVKHQLKPGGTL 372
Query: 462 VYSTCSIDPEENEERVEAFLLRHPEFSIDPADG-----------LVPSDFVTKHGFFFS 509
VYSTC+I+ ENE + FL ++ EF +P + ++P DF + GFF +
Sbjct: 373 VYSTCTIEQLENENVIYTFLKQNSEFEFEPIEHPITHEQVKTLQILPQDFDSD-GFFIT 430
>gi|384181679|ref|YP_005567441.1| 16S rRNA methyltransferase B [Bacillus thuringiensis serovar
finitimus YBT-020]
gi|324327763|gb|ADY23023.1| 16S rRNA methyltransferase B [Bacillus thuringiensis serovar
finitimus YBT-020]
Length = 444
Score = 194 bits (494), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 130/387 (33%), Positives = 210/387 (54%), Gaps = 22/387 (5%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+D +D+ L+T+IV GTI+ R LD+ + +E + +LR+ Y+++ LD
Sbjct: 36 IDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLK-----KKVEAWVRVLLRLSLYQMIYLDR 90
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A + E V +AK G +VNG+LR + +P ++ R LAT
Sbjct: 91 VPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSI------QREGVPSVDEIKDPVER-LAT 143
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
SHPVW+V+ W G E A K+ N P + R N K +T + + L ++
Sbjct: 144 ATSHPVWLVQEWASEYGLETAEKMCEVNMLPPVPTARVNVDK-ITVEEAITLLASEGIEA 202
Query: 286 PH-ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 344
+LS D+ I+++ G NV K+G ++QDES+ LV ++P G ++D CA
Sbjct: 203 KRGDLS---DDAIQIERG--NVAHTDAFKKGFLSIQDESSMLVARALEPDEGDVVLDSCA 257
Query: 345 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-S 403
APGGKT ++A L G G V ++D++ ++R++ + A+ + +V T D R ++ +
Sbjct: 258 APGGKTTHIAERLKGTGQVMSLDLHAHKVRLIKQQAERLGLGNV-ETKALDARKVQEHFA 316
Query: 404 TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463
DK+L+DAPCSG GV+ ++ D++ + D E L +Q +L+ + L+K GG LVY
Sbjct: 317 NETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSERLSTIQLAILEKIAPLLKQGGRLVY 376
Query: 464 STCSIDPEENEERVEAFLLRHPEFSID 490
STC+I+ ENE+ +E FL HPEF D
Sbjct: 377 STCTIEKIENEQVIERFLQEHPEFEWD 403
>gi|289578506|ref|YP_003477133.1| sun protein [Thermoanaerobacter italicus Ab9]
gi|289528219|gb|ADD02571.1| sun protein [Thermoanaerobacter italicus Ab9]
Length = 444
Score = 194 bits (494), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 130/433 (30%), Positives = 220/433 (50%), Gaps = 29/433 (6%)
Query: 103 RTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCH---DEKTFSSMEPLLLQILRIGFY 159
+ ++L + D + +V G I + LD ++ DEK+ +E +G Y
Sbjct: 30 KGRELKEVDRDFIKKLVFGVIERKYTLDFILSFFVKKPADEKSKIFLE--------MGLY 81
Query: 160 EIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRA 218
+++ +D +P YA ++E V +AK L N +N +LR K+ P +R
Sbjct: 82 QLLYMDKVPSYAAINETVNIAKNVLGIKRANFINAVLRSYEREKEKVIFP-----DKERD 136
Query: 219 QARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQL 278
+ L YS+P W+V R +E+A L+ N P R N+ K + DL +
Sbjct: 137 LRKYLMVTYSYPDWIVERLLNNYDEEKAEALLKSLNEKPKICYRVNTLK-IDIEDL--KK 193
Query: 279 NLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQS 338
L+ + ++ +L+E + + ++N L KEGL +QDE++ LV +++P G++
Sbjct: 194 LLVSRGIVYKKGYYLEEALYI--DIKNPESHQLYKEGLIYIQDEASMLVSKILNPNEGET 251
Query: 339 IVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT 398
++D CAAPGGKT ++A + G V A D++ RL ++ E K + +V A T
Sbjct: 252 VLDVCAAPGGKTTHIAQLMKNTGNVVAFDLHPHRLELIKENCKRLGITNV--KAEAFDST 309
Query: 399 FADNSTV-KCDKVLLDAPCSGLGVLSKRADLRW-NRRLEDMEELKILQDELLDAASLLVK 456
F ++ + K DKVL D PC+G+G++ K+ D++ N ++ +L Q ++LD++S VK
Sbjct: 310 FVNDKYLEKADKVLADVPCTGIGIIRKKPDIKLKNYTKSEISQLVETQYKILDSSSKYVK 369
Query: 457 PGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDF---VTKHGFFFSDPIK 513
G LVYSTC+I EEN + FL HP F + +PS G+ + P++
Sbjct: 370 KDGFLVYSTCTIGVEENHNVIMKFLKEHPNFRLVDIKAEMPSGLNIETASLGYIQTTPLE 429
Query: 514 HSLDGAFAARLVR 526
H +DG F ++L R
Sbjct: 430 HGIDGFFISKLKR 442
>gi|402556013|ref|YP_006597284.1| 16S rRNA methyltransferase B [Bacillus cereus FRI-35]
gi|401797223|gb|AFQ11082.1| 16S rRNA methyltransferase B [Bacillus cereus FRI-35]
Length = 444
Score = 194 bits (494), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 131/387 (33%), Positives = 211/387 (54%), Gaps = 22/387 (5%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+D +D+ L+T+IV GTI+ R LD+ + +E + +LR+ Y+++ LD
Sbjct: 36 IDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLK-----KKVEAWVRVLLRLSLYQMIYLDR 90
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A + E V +AK G +VNG+LR + +P E D + A+AT
Sbjct: 91 VPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSI----QREGVPSVD-EIKDPVERLAIAT 145
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
SHPVW+V+ W G E A K+ N P + R N K +T + + L ++
Sbjct: 146 --SHPVWLVQEWASEYGLETAEKMCEVNMLPPVPTARVNVDK-ITVEEAITLLASEGIEA 202
Query: 286 PH-ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 344
+LS D+ I+++ G NV K+G ++QDES+ LV ++P G ++D CA
Sbjct: 203 KRGDLS---DDAIQIERG--NVAHTDAFKKGFLSIQDESSMLVARALEPDEGDVVLDSCA 257
Query: 345 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-S 403
APGGKT ++A L G G V ++D++ ++R++ + A+ + +V T D R ++ +
Sbjct: 258 APGGKTTHIAERLKGTGQVMSLDLHAHKVRLIKQQAERLGLGNV-ETKALDARKVQEHFA 316
Query: 404 TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463
DK+L+DAPCSG GV+ ++ D++ + D E L +Q +L+ + L+K GG LVY
Sbjct: 317 NETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSERLSTIQLAILEKIAPLLKQGGRLVY 376
Query: 464 STCSIDPEENEERVEAFLLRHPEFSID 490
STC+I+ ENE+ +E FL HPEF D
Sbjct: 377 STCTIEKIENEQVIERFLQEHPEFEWD 403
>gi|225377868|ref|ZP_03755089.1| hypothetical protein ROSEINA2194_03527 [Roseburia inulinivorans DSM
16841]
gi|225210306|gb|EEG92660.1| hypothetical protein ROSEINA2194_03527 [Roseburia inulinivorans DSM
16841]
Length = 440
Score = 194 bits (493), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 126/409 (30%), Positives = 217/409 (53%), Gaps = 19/409 (4%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L+ ++ +T + GTI++ LD++I + + M+P++ ILR+ Y++ +D
Sbjct: 39 LEKKERAFITRVSEGTIQYMIELDYIINRF--SKVKVNKMKPVIRNILRMSVYQLKYMDS 96
Query: 166 MPPYAVVDENVRLAKVALRPGAGNL---VNGILRKLVLLKDNNSLPLPKLEGNDRAQARA 222
+P AV +E V+LAK R G G+L VNG+LR + ++ +S+ P + Q +
Sbjct: 97 VPDSAVCNEAVKLAK---RKGFGSLSGFVNGVLRNIS--RNLSSITYPD---GQKDQIQY 148
Query: 223 LATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLK 282
L+ YS P W+V++W G E + ++ + ++R N K +T L M+L
Sbjct: 149 LSVHYSMPEWIVKQWINDYGMERTVSVLQAFLQEAPVTIRTNLLK-ITPEALEMRLKEEG 207
Query: 283 LQVPHELSLHLDE--FIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIV 340
+ + + E + + +G ++ +EGL VQD S+ +V VDP I+
Sbjct: 208 VTTEKIVCADMPELNYAFMISGFDHLNALESFREGLFYVQDVSSMMVAETVDPVKDSYIM 267
Query: 341 DCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 400
D CAAPGGK++++A L G G+V A D+ + ++ + HQ+++ +R + D
Sbjct: 268 DVCAAPGGKSVHLAEKLGGTGMVEARDLTDYKTDLIRQNIARHQLSN-MRAVQMDATVLD 326
Query: 401 DNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGV 460
+ S K D V+ D PCSGLGV+ ++ D+++ L+ +EL LQ ++L+ VK GG
Sbjct: 327 EASIGKADVVIADLPCSGLGVMRRKTDIKYKMTLQTEQELVSLQRKMLETVCQYVKAGGT 386
Query: 461 LVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFS 509
L+YSTC++D ENE+ V FL +HP+F + + P GFF +
Sbjct: 387 LLYSTCTMDKMENEDNVTWFLKQHPQFELVKMQQIFPQK-TYGDGFFLA 434
>gi|375089345|ref|ZP_09735672.1| ribosomal RNA small subunit methyltransferase B [Facklamia languida
CCUG 37842]
gi|374567121|gb|EHR38352.1| ribosomal RNA small subunit methyltransferase B [Facklamia languida
CCUG 37842]
Length = 451
Score = 194 bits (493), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 139/420 (33%), Positives = 219/420 (52%), Gaps = 23/420 (5%)
Query: 110 RDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPP 168
+D LV +V G+I+ R LD+ + ++ EP + +LR+ Y+ + LD +P
Sbjct: 49 KDKNLVVRVVYGSIQRRLTLDYFLSPFIKGQRP----EPWVQSLLRLSIYQALYLDRIPQ 104
Query: 169 YAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYS 228
+A+V+E V +AKV G G VN ILR P P +E R + YS
Sbjct: 105 HAIVNEAVEIAKVNGHQGLGKYVNAILRNFF-----RQGP-PAIEAIQEENKR-WSIQYS 157
Query: 229 HPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHE 288
PVW+V +L + L N S+R N K D VM+ +L L + E
Sbjct: 158 LPVWLVDYLVSHLPSADFHALAESLNQPTHLSIRVNHSK-----DQVMK-DLAALGLGVE 211
Query: 289 LSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGG 348
S D+ IRV G N I + G +QDES+ LV + + ++++D CAAPGG
Sbjct: 212 PSQVADQGIRVMGG--NPIHTACYQTGAITIQDESSMLVAPLGQLKGDEAVLDACAAPGG 269
Query: 349 KTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCD 408
K +AS L+ G + A+D++ +L+ L + A+ + + AD R F ++ + D
Sbjct: 270 KATQIASYLTT-GHLQALDLSASKLKKLAQHAERMGLQDKLTIQVADARYFVPDTQMLYD 328
Query: 409 KVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSI 468
+ LDAPCSGLG++ ++ ++++ + E ++ L LQ +LLD + L+KPGG L+YSTCSI
Sbjct: 329 VIYLDAPCSGLGLMRRKPEIKYQKSKEAIQSLVNLQAQLLDHVAGLLKPGGRLIYSTCSI 388
Query: 469 DPEENEERVEAFLLRHPEFSIDP--ADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARLVR 526
EENE ++ AFL RHP+F+ + + +D +T G P ++ DG F +RL +
Sbjct: 389 AYEENEWQINAFLDRHPDFARQAIQKEEVKQADLITDQGDIRIWPHQYETDGFFISRLSK 448
>gi|423582075|ref|ZP_17558186.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VD014]
gi|401212954|gb|EJR19695.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VD014]
Length = 444
Score = 194 bits (493), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 131/387 (33%), Positives = 212/387 (54%), Gaps = 22/387 (5%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+D +D+ L+T+IV GTI+ R LD+ + +E + +LR+ Y+++ LD
Sbjct: 36 IDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLK-----KKVEAWVRVLLRLSLYQMIYLDR 90
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A + E V +AK G +VNG+LR + +P E D + A+ T
Sbjct: 91 VPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSI----QREGVPSVD-EIKDPVERLAITT 145
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
S+PVW+V+ WT G E A K+ N P + R N K VT + + L ++
Sbjct: 146 --SYPVWLVQEWTSEYGLETAEKMCEVNMLPPVPTARVNVDK-VTVEEAIELLASEGIEA 202
Query: 286 PH-ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 344
+LS D+ I+++ G NV K+G ++QDES+ LV ++P G +++D CA
Sbjct: 203 KRGDLS---DDAIQIERG--NVAHTEAFKKGFLSIQDESSMLVARALEPNTGDAVLDSCA 257
Query: 345 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-S 403
APGGKT ++A L G G V ++D++ ++R++ + A+ + +V T D R ++ +
Sbjct: 258 APGGKTTHIAERLKGTGKVMSLDLHAHKVRLIKQQAERLGLENV-ETKALDARKVQEHFA 316
Query: 404 TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463
DK+L+DAPCSG GV+ ++ D++ + D E L +Q +L+ + L+K GG LVY
Sbjct: 317 NETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSERLSTIQIAILEKIAPLLKQGGRLVY 376
Query: 464 STCSIDPEENEERVEAFLLRHPEFSID 490
STC+I+ ENE+ +E FL HPEF D
Sbjct: 377 STCTIEKIENEQVIEKFLQEHPEFEWD 403
>gi|415886521|ref|ZP_11548301.1| sun protein [Bacillus methanolicus MGA3]
gi|387587208|gb|EIJ79531.1| sun protein [Bacillus methanolicus MGA3]
Length = 446
Score = 194 bits (493), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 132/383 (34%), Positives = 219/383 (57%), Gaps = 30/383 (7%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEP--LLLQILRIGFYEIVK 163
++D +D+ L+T++ GT++ + LD+ + K F +P +L +LR+ Y++V
Sbjct: 37 EIDQKDVGLLTELTYGTLQRQMTLDYFL-------KPFIKKKPDRWVLHLLRLTLYQMVY 89
Query: 164 LD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEG-NDRAQAR 221
LD +P A + E V +AK G ++VNG+LR + LP LE ND +
Sbjct: 90 LDKIPDRAAIYEAVEIAKKRGHKGIASMVNGVLRNI------QRQGLPPLENINDPIERL 143
Query: 222 ALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLL 281
A+ T SHP W+V+RWT G E+ K+ N + P + R N K ++R + + L
Sbjct: 144 AIET--SHPEWLVKRWTDQFGFEKTKKMCETNLTPPFQTARVNVTK-ISRDECLQLLENE 200
Query: 282 KLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVD 341
+V E S + E I+ G N+ + K GL +QDES+ LV ++ + +I+D
Sbjct: 201 GFRV--EASSIIPEAIKCLKG--NLATSNAFKNGLITIQDESSMLVAYALNIEENFTILD 256
Query: 342 CCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETA-KLHQVNSVIRTIHADL--RT 398
AAPGGK+ ++A L+ G V ++D+++ +++++ A +L N ++ + + L
Sbjct: 257 AAAAPGGKSTHIAEKLNQTGKVISLDLHEHKVKLIGRAAERLGLDNIELKVLDSRLAPEH 316
Query: 399 FADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPG 458
FA S D++LLDAPCSGLGV+ ++ DL++ + ED+ +LK +Q +LL + + L+K G
Sbjct: 317 FAAES---FDRILLDAPCSGLGVMRRKPDLKYTKTEEDVYKLKQVQQDLLKSVAPLLKKG 373
Query: 459 GVLVYSTCSIDPEENEERVEAFL 481
G+LVYSTC++D EEN E VE+FL
Sbjct: 374 GILVYSTCTVDREENHEVVESFL 396
>gi|223940862|ref|ZP_03632690.1| sun protein [bacterium Ellin514]
gi|223890472|gb|EEF57005.1| sun protein [bacterium Ellin514]
Length = 444
Score = 194 bits (492), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 139/420 (33%), Positives = 210/420 (50%), Gaps = 33/420 (7%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSME-PLLLQILRIGFYEIVKLD-MPP 168
D L ++V G +RW+ L+ LI D KT + P + +L++G Y++ LD +P
Sbjct: 50 DRGLCQELVYGIVRWQETLNWLI-----DRKTEGRRQKPEMQVLLQLGLYQMFWLDRIPN 104
Query: 169 YAVVDENVRLAKVALRPGAGNLVNGILRKLVLLK-DNNSLPLPKLEGNDRAQARALATIY 227
+A V E V +AK VN +LR + + + L LE AQ + Y
Sbjct: 105 HAAVHETVEIAKELGFVAQSGFVNAVLRGYLRERVETEKL----LEEVKIAQPQ---IGY 157
Query: 228 SHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQ-VP 286
SHP W+ +RW + G E KLM WNN+ R N+ K A + Q ++ +P
Sbjct: 158 SHPEWVYQRWLERYGAEHTAKLMEWNNTPARTYARINTLKA-DAAKVTAQWETEGVKFIP 216
Query: 287 HELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAP 346
+ D I + K+G +QD S L V +D + S++D CAAP
Sbjct: 217 RQYDWIEDGLIFELESHPPLAGLKSFKDGFFYIQDPSTLLSVRELDVKAAHSVLDLCAAP 276
Query: 347 GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVK 406
GGKT +A + +G + A DI+ RL +L E V V+ +I + N +
Sbjct: 277 GGKTTMIAQQMQNRGQIVAQDISDDRLALLRENYVRLGVTCVVASIAPN--AVIANPAQR 334
Query: 407 CDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTC 466
D+VL+DAPCS GV+ +R DLRW + E++E L+ Q ELL A+ +KP G++VYSTC
Sbjct: 335 FDRVLIDAPCSNTGVMRRRVDLRWRIQPEEVERLRETQLELLRRAAPRLKPNGIMVYSTC 394
Query: 467 SIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARLVR 526
S++PEEN + V+ FL +P+F + L P F +D +DGA+ A+L+R
Sbjct: 395 SLEPEENSQVVQQFLSENPDFELKSERQLTP---------FGND-----VDGAYTAKLIR 440
>gi|16078637|ref|NP_389456.1| RNA-binding Sun protein [Bacillus subtilis subsp. subtilis str.
168]
gi|221309449|ref|ZP_03591296.1| hypothetical protein Bsubs1_08691 [Bacillus subtilis subsp.
subtilis str. 168]
gi|221313774|ref|ZP_03595579.1| hypothetical protein BsubsN3_08627 [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
gi|221318698|ref|ZP_03599992.1| hypothetical protein BsubsJ_08561 [Bacillus subtilis subsp.
subtilis str. JH642]
gi|221322969|ref|ZP_03604263.1| hypothetical protein BsubsS_08667 [Bacillus subtilis subsp.
subtilis str. SMY]
gi|402775819|ref|YP_006629763.1| RNA-binding Sun protein [Bacillus subtilis QB928]
gi|418033279|ref|ZP_12671756.1| hypothetical protein BSSC8_27000 [Bacillus subtilis subsp. subtilis
str. SC-8]
gi|452914583|ref|ZP_21963210.1| ribosomal RNA small subunit methyltransferase B [Bacillus subtilis
MB73/2]
gi|3915867|sp|P94464.2|RSMB_BACSU RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|2337803|emb|CAA74264.1| putative Fmu protein [Bacillus subtilis subsp. subtilis str. 168]
gi|2633946|emb|CAB13447.1| RNA-binding Sun protein; 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Bacillus subtilis
subsp. subtilis str. 168]
gi|351469427|gb|EHA29603.1| hypothetical protein BSSC8_27000 [Bacillus subtilis subsp. subtilis
str. SC-8]
gi|402481001|gb|AFQ57510.1| RNA-binding Sun protein [Bacillus subtilis QB928]
gi|407958981|dbj|BAM52221.1| RNA-binding Sun protein [Synechocystis sp. PCC 6803]
gi|407964558|dbj|BAM57797.1| RNA-binding Sun protein [Bacillus subtilis BEST7003]
gi|452117003|gb|EME07398.1| ribosomal RNA small subunit methyltransferase B [Bacillus subtilis
MB73/2]
Length = 447
Score = 194 bits (492), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 117/391 (29%), Positives = 218/391 (55%), Gaps = 18/391 (4%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
++ +L D++ L+T++V GT++ + LD+++ + + ++P ++Q+LR+ Y++
Sbjct: 32 IKSNELSDQNRGLLTELVYGTLQNKIALDYMLKPFINKPQ---KVKPWVIQLLRLSLYQM 88
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
L+ +P A + E V +AK+ G + VNG+LR + +P + +
Sbjct: 89 EYLEKIPDRAAIHEAVEIAKIRGHKGIASFVNGVLRSI------QREGVPSFDAIEDP-V 141
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
R LAT SHP W+V+ W G E A K+ + P +LR N K RA+L+ Q+
Sbjct: 142 RRLATETSHPEWLVKEWADAYGFEAAEKICRIHLIPPKQTLRVNQMKA-DRAELLDQMAA 200
Query: 281 LKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIV 340
++V E ++ +++ G + + G ++QDES+ LV +DP+ ++++
Sbjct: 201 EGIEV--EKGDLAEDAVKLLKG--TIAGTHFFQNGEVSIQDESSMLVARALDPKSDETVL 256
Query: 341 DCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 400
D CAAPGGK+ ++A + +G V ++D++K +++++ E A + ++I D R
Sbjct: 257 DACAAPGGKSAHIAELMKNKGSVTSLDLHKHKVKLIKEAADRLGL-TIIHAETMDARKAG 315
Query: 401 DN-STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGG 459
+ + D++L+DAPCSG GV+ ++ D+++ ++ +D L +Q +L + LVK GG
Sbjct: 316 ETFENEQFDRILVDAPCSGFGVIRRKPDMKYTKKPDDSARLAEIQLSILREIAPLVKKGG 375
Query: 460 VLVYSTCSIDPEENEERVEAFLLRHPEFSID 490
LVYSTC++D EN+E + AF+ HP+F D
Sbjct: 376 TLVYSTCTMDRTENDEVIHAFIQEHPDFEPD 406
>gi|346315319|ref|ZP_08856834.1| ribosomal RNA small subunit methyltransferase B
[Erysipelotrichaceae bacterium 2_2_44A]
gi|345904847|gb|EGX74590.1| ribosomal RNA small subunit methyltransferase B
[Erysipelotrichaceae bacterium 2_2_44A]
Length = 415
Score = 194 bits (492), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 139/439 (31%), Positives = 227/439 (51%), Gaps = 50/439 (11%)
Query: 94 GYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPL--LL 151
GY L + + +D +D LVT IV GT++ R L+ + +++ EP +
Sbjct: 19 GYSNLLLRNKLQSVDPKDKALVTQIVYGTLQNYR-------LVRYQWQSYVKKEPCKEVA 71
Query: 152 QILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLP 210
+L + Y+++ +D MP YAV+DE VR+ K + P LVN +LR++ + N
Sbjct: 72 LLLDMSVYQLLYMDKMPAYAVIDEAVRITKKNIHPRFSALVNAVLRQV----ERNGKR-- 125
Query: 211 KLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVT 270
+LEGN Q LA SHP W+V W G +E K+ +SD RK
Sbjct: 126 ELEGNAIEQ---LALETSHPTWLVAMWKAQYGWQECEKIC---HSDLEI------RKQCV 173
Query: 271 RADLVMQLNLLKLQVPHEL---SLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLV 327
R + M+ ++ +L E SL D + ++I + K+GL ++QDE + LV
Sbjct: 174 RVN-TMKASVEELLASGEFAKGSLAEDALYYLGN---DIIHSNYYKQGLISIQDEVSQLV 229
Query: 328 VAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNS 387
VDPQP + I+D C+APG K ++A + +G + DI+ R+ ++ A+ Q+ S
Sbjct: 230 AQYVDPQPQERILDVCSAPGTKACHIAERMGDKGSIVCGDIHAHRVELIKNGARRLQLQS 289
Query: 388 VIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDEL 447
+ + D + + D+VL D PCSG GVL++++D++++ + DM+ L LQ ++
Sbjct: 290 IQAQV-MDATSLKEIEGEMFDRVLCDVPCSGYGVLARKSDIKYHAKSTDMDTLIPLQQQI 348
Query: 448 LDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFF 507
L +AS V G+LVYSTC+++ +ENE++V AFL +H EF + + + F
Sbjct: 349 LQSASKHVVKDGILVYSTCTLNKKENEKQVAAFLAQHEEF-----------ECLQQQTIF 397
Query: 508 FSDPIKHSLDGAFAARLVR 526
P H DG + A+L R
Sbjct: 398 ---PYTHHSDGFYIAKLKR 413
>gi|297544782|ref|YP_003677084.1| sun protein [Thermoanaerobacter mathranii subsp. mathranii str. A3]
gi|296842557|gb|ADH61073.1| sun protein [Thermoanaerobacter mathranii subsp. mathranii str. A3]
Length = 444
Score = 194 bits (492), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 130/433 (30%), Positives = 220/433 (50%), Gaps = 29/433 (6%)
Query: 103 RTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCH---DEKTFSSMEPLLLQILRIGFY 159
+ ++L + D ++V G I + LD ++ DEK+ +E +G Y
Sbjct: 30 KGQELKEIDRGFTKELVFGVIERKYTLDFILSFFVKKPADEKSKIFLE--------MGLY 81
Query: 160 EIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRA 218
+++ +D +P YA ++E V +AK L N +N +LR K+ P +R
Sbjct: 82 QLLYMDKVPSYAAINETVNIAKNVLGIKRANFINAVLRSYEREKEKVIFP-----DKERD 136
Query: 219 QARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQL 278
+ L YS+P W+V R +E+A L+ N P R N+ K + DL +
Sbjct: 137 LRKYLMVTYSYPDWIVERLLNNYDEEKAEALLKSLNEKPKICYRVNTLK-IDIEDL--KK 193
Query: 279 NLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQS 338
L+ + ++ +L+E + + ++N L KEGL +QDE++ LV +++P G++
Sbjct: 194 LLVSRGIVYKKGYYLEEALYI--DIKNPESHQLYKEGLIYIQDEASMLVSKILNPNEGET 251
Query: 339 IVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT 398
++D CAAPGGKT ++A + G V A D++ RL ++ E K + +V A T
Sbjct: 252 VLDVCAAPGGKTTHIAQLMKNTGNVVAFDLHPHRLELIKENCKRLGITNV--KAEAFDST 309
Query: 399 FADNSTV-KCDKVLLDAPCSGLGVLSKRADLRW-NRRLEDMEELKILQDELLDAASLLVK 456
F ++ + K DKVL D PC+G+G++ K+ D++ N ++ +L Q ++LD++S VK
Sbjct: 310 FVNDKYLEKADKVLADVPCTGIGIIRKKPDIKLKNYTKSEISQLVETQYKILDSSSKYVK 369
Query: 457 PGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDF---VTKHGFFFSDPIK 513
G LVYSTC+I EEN + FL HP F + +PS G+ + P++
Sbjct: 370 KDGFLVYSTCTIGVEENHNVIMKFLKEHPNFRLVDIKAEMPSGLNIETASLGYIQTTPLE 429
Query: 514 HSLDGAFAARLVR 526
H +DG F ++L R
Sbjct: 430 HGIDGFFISKLKR 442
>gi|423406710|ref|ZP_17383859.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG2X1-3]
gi|401660000|gb|EJS77483.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG2X1-3]
Length = 444
Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 132/389 (33%), Positives = 206/389 (52%), Gaps = 26/389 (6%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+D +D+ L+T+IV GTI+ R LD+ + +E + +LR+ Y+++ LD
Sbjct: 36 IDRKDVGLLTEIVYGTIQRRDTLDYYLQPFLR-----KKVEAWVRVLLRLSLYQMIYLDR 90
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A + E V +AK G +VNG+LR + +P L+ R LA
Sbjct: 91 VPERAAIHEAVEIAKRRGHKGISGMVNGVLRSI------QREGVPSLDEIKDPVER-LAI 143
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
SHPVW+V+ WT G E A K+ N P + R N K + + N
Sbjct: 144 AMSHPVWLVQEWTSEYGLETAEKMCEVNMLPPVPTARVNVDKVTVEEAIELLANEGIEAK 203
Query: 286 PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAA 345
+LS D+ I+++ G NV K+G ++QDES+ LV ++P G ++D CAA
Sbjct: 204 RGDLS---DDAIQIEKG--NVAHTEAFKKGFLSIQDESSMLVARALEPDEGDVVLDSCAA 258
Query: 346 PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT----FAD 401
PGGKT ++A L G G V ++D++ ++R++ + A + +V T D R FA+
Sbjct: 259 PGGKTTHIAERLKGTGKVMSLDLHAHKVRLIKQQADRLGLENV-ETKALDARKVQEHFAN 317
Query: 402 NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVL 461
S DK+L+DAPCSG GV+ ++ D++ + D E L +Q +L+ + L+K GG L
Sbjct: 318 ES---FDKILVDAPCSGFGVIRRKPDIKLGKDKGDSERLSTIQLAILEKIAPLLKQGGRL 374
Query: 462 VYSTCSIDPEENEERVEAFLLRHPEFSID 490
VYSTC+I+ ENE+ ++ FL HPEF D
Sbjct: 375 VYSTCTIEKIENEQAIKQFLQEHPEFEWD 403
>gi|227552686|ref|ZP_03982735.1| RNA methyltransferase [Enterococcus faecium TX1330]
gi|257897390|ref|ZP_05677043.1| rRNA SAM-dependent methyltransferase [Enterococcus faecium Com12]
gi|293378850|ref|ZP_06625005.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium PC4.1]
gi|424762075|ref|ZP_18189601.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium TX1337RF]
gi|431043192|ref|ZP_19492991.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1590]
gi|431753358|ref|ZP_19542032.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E2620]
gi|431763474|ref|ZP_19552024.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E3548]
gi|227178181|gb|EEI59153.1| RNA methyltransferase [Enterococcus faecium TX1330]
gi|257833955|gb|EEV60376.1| rRNA SAM-dependent methyltransferase [Enterococcus faecium Com12]
gi|292642391|gb|EFF60546.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium PC4.1]
gi|402425837|gb|EJV57981.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium TX1337RF]
gi|430561636|gb|ELB00899.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1590]
gi|430612265|gb|ELB49316.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E2620]
gi|430622247|gb|ELB58984.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E3548]
Length = 452
Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 141/466 (30%), Positives = 241/466 (51%), Gaps = 50/466 (10%)
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVG 120
R ++ + L R+ GGA+++LL NEM + +L+ +D+ L T+++
Sbjct: 13 RYMALLTLERVNKGGAYSNLLL--------NEM--------IKQSELNQKDVGLFTELIY 56
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLA 179
GTI +R L+ + L K ++ + +L + Y++ LD +P +A+++E V +A
Sbjct: 57 GTISHQRLLEFYVASLIAKAK---KVDDWVKTLLYLSVYQLEFLDKVPAHAILNEAVEIA 113
Query: 180 KVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTK 239
KV PG G VNG+LR + P L+G R L+ S P+WM +R
Sbjct: 114 KVKGNPGTGKFVNGVLR------NYQRQGAPDLQGIADPIER-LSVKISLPLWMTKRLVD 166
Query: 240 YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFIRV 299
+G EE KL + S R ++R+ ++R + L + ++ E S I
Sbjct: 167 QIGYEETEKLGLSLYQPSHASARVDTRR-LSRDQAITVLQ--EEEISAEKSQVSPYGIVA 223
Query: 300 KTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCL-- 357
K G ++ + L +G+ +QDES+ LV + +P ++D CAAPGGKT ++AS L
Sbjct: 224 KKG--HLASSSLFHDGVMTIQDESSMLVAPSMQIEPEHHVLDACAAPGGKTTHIASFLDP 281
Query: 358 SGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVKCDKVLLDAPC 416
S G V A+D+++ +++++ E A V+S + D R + + D++L+DAPC
Sbjct: 282 SCGGEVIALDVHEHKVKLIEENATRLGVSSAVYAQKMDAREVSKQFEPEQFDRILVDAPC 341
Query: 417 SGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEER 476
SGLG+L ++ D+R+ ++ +++ L +Q E+L++ + +K G+L YSTC+I EEN++
Sbjct: 342 SGLGLLRRKPDIRYKKQPDELANLPKIQLEILESCAPALKSSGILTYSTCTILKEENQDV 401
Query: 477 VEAFLLRHPEFS--------------IDPADGLVPSDFVTKHGFFF 508
V AFL RHP+F ++ L P F T GFF
Sbjct: 402 VSAFLERHPDFERIDVLTNPMLQSSIVEKMLTLYPHQFYTD-GFFI 446
>gi|171912374|ref|ZP_02927844.1| RsmB [Verrucomicrobium spinosum DSM 4136]
Length = 414
Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 144/431 (33%), Positives = 211/431 (48%), Gaps = 59/431 (13%)
Query: 104 TKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVK 163
T LD RD L+ +V GT+R LD + +C ++ +S+ +LR+G +++
Sbjct: 36 THRLDHRDTALLQTLVMGTLRNIDLLDIWLERVCDNQHLETSVH----WLLRLGIAQLLL 91
Query: 164 LDMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARAL 223
L+MP +AVV+E V A A LVN +LR++ D +PL L DR +
Sbjct: 92 LEMPAHAVVNETVNQAG-----KARGLVNAVLRRV----DRERIPL--LARMDRL---PI 137
Query: 224 ATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKL 283
A SHP W+ RWTK G+ A L W+ S +R N QL+ L
Sbjct: 138 AERTSHPSWLAERWTKQFGKSAAEALCEWDQQPASTYVRVN------------QLHPQPL 185
Query: 284 QVPHEL----SLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSI 339
P E+ + F R T + L G C QD S + ++ PQPG++I
Sbjct: 186 -TPEEVLPLEPISFPGFFRADT-----LPREWLASGRCYAQDPSTVIACDLLAPQPGETI 239
Query: 340 VDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVI---RTIHADL 396
+D CAAPGGK+ Y+A + QG + D RL+ + + L ++N I R +
Sbjct: 240 LDACAAPGGKSAYLAQKMQNQGRILTCDSVPRRLQRMQQ--NLERLNVTIAENRQVDWTK 297
Query: 397 RTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVK 456
V+ D++LLDAPCS GV+ +R D+RW E E+ LQ ++L S L+K
Sbjct: 298 PLPPIWKGVQVDRILLDAPCSNTGVMRRRVDVRWRLDPEVFVEMAQLQTKILSTLSPLLK 357
Query: 457 PGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSL 516
GG LVYSTCS+D EENE+ + +FL+ HPEF + T+ P +
Sbjct: 358 SGGSLVYSTCSLDREENEDIIASFLVAHPEFKL----------VETRSSL----PWRDGF 403
Query: 517 DGAFAARLVRA 527
DGAFAA L+++
Sbjct: 404 DGAFAALLLKS 414
>gi|339624615|ref|ZP_08660404.1| 16S rRNA methyltransferase B [Fructobacillus fructosus KCTC 3544]
Length = 448
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 140/419 (33%), Positives = 222/419 (52%), Gaps = 33/419 (7%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L D+D L+T +V GTI++R L++ + +K MEP L ++L Y+ KLD
Sbjct: 41 LKDQDKGLLTSLVYGTIQYRLLLEYWLAPFVKGKK----MEPWLKELLLTALYQWQKLDR 96
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P +A+ +E + +AK GA V IL + D + LP P+ +D + L+
Sbjct: 97 IPKHALFNETIEVAKTLGNVGAAKFVTAILHNM----DRHGLPDPEKIQDD---LKRLSI 149
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
YS PVW+V +G E+ ++ N P S+R N+ + T+A + QL V
Sbjct: 150 TYSVPVWLVEELQDQVGTEKTASILQSLNHAPEQSVRVNTVRA-TKALVRKQLEDEGYTV 208
Query: 286 PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPG-QSIVDCCA 344
+ L D I V G +V + +EGL VQDESA L V + G +S++D A
Sbjct: 209 -RDGQLATDALI-VSGG--HVASSKAYQEGLLTVQDESAMLPVEAMHIDQGVRSVLDAAA 264
Query: 345 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNST 404
APGGKT +A L V A+DI++ +++++ + A + +R + D R +
Sbjct: 265 APGGKTTQIAQDLPEGAFVTALDIHRHKVQLIAQNAARLGLADRVRAMEMDAREIPEKLA 324
Query: 405 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464
+ D++L+DAPCSGLG+L ++ ++R+++ ++D+ L LQ +L+AA+ +K G LVYS
Sbjct: 325 EEFDRILVDAPCSGLGLLRRKPEIRYDKTMDDVRHLSKLQLAILEAAATKLKKDGYLVYS 384
Query: 465 TCSIDPEENEERVEAFLLRHPEF---------SIDP-----ADGLVPSDFVTKHGFFFS 509
TC+I +EN+E V AFL +HP+F SI A L P DF T GF+ +
Sbjct: 385 TCTILNQENDEVVAAFLAKHPDFIQVKTETSRSIKSSRETLALKLYPDDFQTD-GFYIA 442
>gi|257888654|ref|ZP_05668307.1| rRNA SAM-dependent methyltransferase [Enterococcus faecium
1,141,733]
gi|257824708|gb|EEV51640.1| rRNA SAM-dependent methyltransferase [Enterococcus faecium
1,141,733]
Length = 452
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 141/466 (30%), Positives = 241/466 (51%), Gaps = 50/466 (10%)
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVG 120
R ++ + L R+ GGA+++LL NEM + +L+ +D+ L T+++
Sbjct: 13 RYMALLTLERVNKGGAYSNLLL--------NEM--------IKQSELNQKDVGLFTELIY 56
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLA 179
GTI +R L+ + L K ++ + +L + Y++ LD +P +A+++E V +A
Sbjct: 57 GTISHQRLLEFYVAPLIAKAK---KVDDWVKTLLYLSVYQLEFLDKVPAHAILNEAVEIA 113
Query: 180 KVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTK 239
KV PG G VNG+LR + P L+G R L+ S P+WM +R
Sbjct: 114 KVKGNPGTGKFVNGVLR------NYQRQGAPDLQGIADPIER-LSVKISLPLWMTKRLVD 166
Query: 240 YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFIRV 299
+G EE KL + S R ++R+ ++R + L + ++ E S I
Sbjct: 167 QIGYEETEKLGLSLYQPSHASARVDTRR-LSRDQAITVLQ--EEEISAEKSQVSPYGIVA 223
Query: 300 KTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCL-- 357
K G ++ + L +G+ +QDES+ LV + +P ++D CAAPGGKT ++AS L
Sbjct: 224 KKG--HLASSSLFHDGVMTIQDESSMLVAPSMQIEPEHHVLDACAAPGGKTTHIASFLDP 281
Query: 358 SGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVKCDKVLLDAPC 416
S G V A+D+++ +++++ E A V+S + D R + + D++L+DAPC
Sbjct: 282 SCGGEVIALDVHEHKVKLIEENATRLGVSSAVYAQKMDAREVSKQFEPEQFDRILVDAPC 341
Query: 417 SGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEER 476
SGLG+L ++ D+R+ ++ +++ L +Q E+L++ + +K G+L YSTC+I EEN++
Sbjct: 342 SGLGLLRRKPDIRYKKQPDELANLPKIQLEILESCAPALKSSGILTYSTCTILKEENQDV 401
Query: 477 VEAFLLRHPEFS--------------IDPADGLVPSDFVTKHGFFF 508
V AFL RHP+F ++ L P F T GFF
Sbjct: 402 VSAFLERHPDFERIDVLTNPMLQSSIVEKMLTLYPHQFYTD-GFFI 446
>gi|402815959|ref|ZP_10865551.1| ribosomal RNA small subunit methyltransferase B [Paenibacillus
alvei DSM 29]
gi|402506999|gb|EJW17522.1| ribosomal RNA small subunit methyltransferase B [Paenibacillus
alvei DSM 29]
Length = 465
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 128/374 (34%), Positives = 204/374 (54%), Gaps = 17/374 (4%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPY 169
D L T++V GTI+ +D + L ++ + ++P + +LR+ Y++ LD +P +
Sbjct: 50 DAGLATELVYGTIQRLNTIDGV--LEQKVQRGLAKLKPWMRNLLRMTAYQLHYLDRIPAH 107
Query: 170 AVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSH 229
A ++E V +AK G NG+LR ++++ P G+D + +SH
Sbjct: 108 AAINEAVTIAKRRGGQSMGGFANGVLR--AIMREPQLWETPA--GSD--PVSRIVWEHSH 161
Query: 230 PVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV-PHE 288
P W+V W K G+EE + NN P S R N+ + R L++ + L V P
Sbjct: 162 PAWLVSNWVKAYGEEETAAMCESNNRPPHGSARVNALR-TNREKLLVDMRAEGLNVMPSS 220
Query: 289 LSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGG 348
LS + I V G N+ + + G +VQDES+ LVV + P+ G ++DCCAAPGG
Sbjct: 221 LS---KDGI-VAEGAGNLALSQWYRNGELSVQDESSMLVVEALRPEAGMRVLDCCAAPGG 276
Query: 349 KTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKC- 407
KT ++A + +G V A D++ ++ ++ + A+ + SV T++ D V
Sbjct: 277 KTTHIAERMGNKGEVVANDVHAHKVALIADQAERLGLTSVA-TMNVDASILGRELPVGSF 335
Query: 408 DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467
D VLLDAPC+G GV+ ++ D++W +R ED+ + LQ ELLD A+ LV+PGG LVYSTC+
Sbjct: 336 DAVLLDAPCTGFGVIRRKPDIKWAKRPEDVASIASLQAELLDQAAQLVRPGGRLVYSTCT 395
Query: 468 IDPEENEERVEAFL 481
++ ENE+ V FL
Sbjct: 396 VERAENEDVVRRFL 409
>gi|423395834|ref|ZP_17373035.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG2X1-1]
gi|401653576|gb|EJS71120.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG2X1-1]
Length = 444
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 132/389 (33%), Positives = 206/389 (52%), Gaps = 26/389 (6%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+D +D+ L+T+IV GTI+ R LD+ + +E + +LR+ Y+++ LD
Sbjct: 36 IDRKDVGLLTEIVYGTIQRRDTLDYYLQPFLR-----KKVEAWVRVLLRLSLYQMIYLDR 90
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A + E V +AK G +VNG+LR + +P L+ R LA
Sbjct: 91 VPERAAIHEAVEIAKRRGHKGISGMVNGVLRSI------QREGVPSLDEIKDPVER-LAI 143
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
SHPVW+V+ WT G E A K+ N P + R N K + + N
Sbjct: 144 AMSHPVWLVQEWTSEYGLETAEKMCEVNMLPPVPTARVNVDKVTVEEAIELLANEGIEAK 203
Query: 286 PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAA 345
+LS D+ I+++ G NV K+G ++QDES+ LV ++P G ++D CAA
Sbjct: 204 RGDLS---DDAIQIEKG--NVAHTEAFKKGFLSIQDESSMLVARALEPDEGDVVLDSCAA 258
Query: 346 PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT----FAD 401
PGGKT ++A L G G V ++D++ ++R++ + A + +V T D R FA+
Sbjct: 259 PGGKTTHIAERLKGTGKVMSLDLHAHKVRLIKQQADRLGLENV-ETKALDARKVQEHFAN 317
Query: 402 NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVL 461
S DK+L+DAPCSG GV+ ++ D++ + D E L +Q +L+ + L+K GG L
Sbjct: 318 ES---FDKILVDAPCSGFGVIRRKPDIKLGKDKGDSERLSTIQLAILEKIAPLLKQGGRL 374
Query: 462 VYSTCSIDPEENEERVEAFLLRHPEFSID 490
VYSTC+I+ ENE+ ++ FL HPEF D
Sbjct: 375 VYSTCTIEKIENEQVIKQFLQEHPEFEWD 403
>gi|228992593|ref|ZP_04152520.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
pseudomycoides DSM 12442]
gi|228998641|ref|ZP_04158228.1| Ribosomal RNA small subunit methyltransferase B [Bacillus mycoides
Rock3-17]
gi|228761109|gb|EEM10068.1| Ribosomal RNA small subunit methyltransferase B [Bacillus mycoides
Rock3-17]
gi|228767227|gb|EEM15863.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
pseudomycoides DSM 12442]
Length = 415
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 131/390 (33%), Positives = 208/390 (53%), Gaps = 28/390 (7%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+D +D+ L+T+IV GTI+ R LD+ + +E + +LR+ Y+++ LD
Sbjct: 7 IDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLR-----KKVEAWVKILLRLSLYQMLYLDR 61
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A + E V +AK G +VNG+LR + +P LE R ++
Sbjct: 62 VPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSI------QREGVPSLEEIQNPVER-VSV 114
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
SHP W+V+ W E A K+ N P + R N K +T + + L +Q
Sbjct: 115 ATSHPEWLVQEWVSAYDLETAQKMCEVNMVPPVPTARVNVDK-ITVEEAIALLEREGVQA 173
Query: 286 PH-ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 344
+LS ++ I+++ G NV K G ++QDES+ LV + P+ G ++D CA
Sbjct: 174 KRGDLS---EDAIQIEKG--NVAHTEAFKNGFLSIQDESSMLVARALKPEEGDMVLDSCA 228
Query: 345 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT----FA 400
APGGKT ++A L G G V ++D++ ++R++ + AK ++ + I T D R FA
Sbjct: 229 APGGKTTHIAERLKGTGQVTSLDLHPHKVRLIQQQAKRLELEN-IETKALDARKVQEHFA 287
Query: 401 DNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGV 460
+ S DK+L+DAPCSG GV+ ++ D++ + D E L +Q +L+ + L+K GG
Sbjct: 288 NES---FDKILVDAPCSGFGVIRRKPDIKLGKEKGDSERLSTIQLSILEKVAPLLKAGGR 344
Query: 461 LVYSTCSIDPEENEERVEAFLLRHPEFSID 490
LVYSTC+I+ ENE+ +E FL HPEF D
Sbjct: 345 LVYSTCTIEKIENEQVIEQFLQEHPEFEWD 374
>gi|123965723|ref|YP_001010804.1| Sun protein (Fmu protein) [Prochlorococcus marinus str. MIT 9515]
gi|123200089|gb|ABM71697.1| Sun protein (Fmu protein) [Prochlorococcus marinus str. MIT 9515]
Length = 437
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 128/415 (30%), Positives = 218/415 (52%), Gaps = 25/415 (6%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLI---CLLCHDEKTFSSMEPLLLQILRIGF 158
+ + + D+ +T++ G IR+R++LD I L H ++ P L +L IG
Sbjct: 32 LKNYEFNSLDIAFITELSFGCIRYRKFLDTWIDHISKLSHQKQP-----PKLRWLLHIGL 86
Query: 159 YEIVKLDMPPY-AVVDENVRLAKVALRPGAGNLVNGILRKLV--LLKDNNSLPLPKLEGN 215
Y+++K+D P+ A + V +AK G VN ILR V + +DN PK+ +
Sbjct: 87 YQLLKMDKIPFPAAISSTVEVAKRTDLKGLAGTVNAILRNTVRNIERDN----CPKISTD 142
Query: 216 DRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLV 275
+ + L+ + S P+W+V ++G +EA + N P+ LR NS K ++
Sbjct: 143 EMEK---LSCLESLPLWLVTEIVNWVGIKEAKNIFKAFNKKPTIDLRINSLK-TNFNKIL 198
Query: 276 MQLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQP 335
+LN +Q E L+ + + + +++ K+GL VQD S+ V +++P+
Sbjct: 199 KELNECNIQA--EPINQLNNGVALNSNPRSIKNLPGYKDGLWVVQDRSSQWVAPLLNPKK 256
Query: 336 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHAD 395
G+ I+D C+APG KT ++A+ ++ + A+D ++ RL+IL + + SV +T+ AD
Sbjct: 257 GEKILDACSAPGSKTTHLAALVNDDAEILAVDRSEKRLKILQSNLERLNIKSV-KTLEAD 315
Query: 396 LRTFAD---NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAAS 452
T D N DK+L+DAPCSG+G ++ D RW+ + + +L ILQ+ LLD+
Sbjct: 316 ATTLIDIKPNLASYFDKILIDAPCSGIGTFARNPDTRWSLSKDKINQLIILQEGLLDSIF 375
Query: 453 LLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFF 507
L+K G LVYSTC+I P+EN + FL ++ E +D ++P GF+
Sbjct: 376 PLLKKNGTLVYSTCTICPDENNLLIRRFLSKNKELKLDSERQILPRFDKPGDGFY 430
>gi|227524617|ref|ZP_03954666.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus hilgardii
ATCC 8290]
gi|227088292|gb|EEI23604.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus hilgardii
ATCC 8290]
Length = 444
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 145/429 (33%), Positives = 221/429 (51%), Gaps = 33/429 (7%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDH-LICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD 165
+ D D L T+IV G I+ R L++ L+ L EKT E + ++L Y++ LD
Sbjct: 38 MSDVDKALFTNIVYGVIQHRMTLEYQLVPFLKDSEKT----EDWVKELLYTAMYQLEYLD 93
Query: 166 -MPPYAVVDENVRLAKVALRPGAGNLVNGIL----RKLVLLKDNNSLPLPKLEGNDRAQA 220
+P A+ DE++++AK G V GIL RK V D P+ K+
Sbjct: 94 RVPKRAIFDESIKIAKSMGHDGTRRFVTGILHQMDRKGVREPDKIKDPVKKI-------- 145
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
+ YS P W+V LG+++A ++ N P S+R N K T++ L QL
Sbjct: 146 ---SIKYSVPEWLVSLIEGQLGKQKADQVFKSLNQTPKQSVRFNKAK-TTKSKLTDQLTQ 201
Query: 281 LKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIV 340
Q E SL E I V G V+ + + GL +QDESA L V + QP I+
Sbjct: 202 AGFQT--EDSLVAGEGIIVDKG--QVVHSAFFENGLLTIQDESAMLPVESMSIQPDDLIL 257
Query: 341 DCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 400
D C+APGGKT +A+ L G V A+DI++ +L+ + AK V+ V+ T D R
Sbjct: 258 DACSAPGGKTTQIAANLKN-GRVIALDIHQNKLKNVIRNAKRLGVDGVVETQALDARKVD 316
Query: 401 DN-STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGG 459
+ S D +L+DAPCSG G++ ++ ++R+++ L D+ L +Q ++L+A + VK GG
Sbjct: 317 EKFSDEMFDHILVDAPCSGFGLMRRKPEIRYDKTLADINHLSQIQLQILEAVAPKVKTGG 376
Query: 460 VLVYSTCSIDPEENEERVEAFLLRHPEFSIDP--ADGLVPSDFVTKHGFFFSDPIKHSLD 517
+ YSTC+I +EN+E ++ FL HP+F I+P D + +D ++G P D
Sbjct: 377 TITYSTCTIVQQENQEVIKQFLDAHPDFQIEPTKTDLNLTTD---ENGMINIYPDDFGSD 433
Query: 518 GAFAARLVR 526
G F LVR
Sbjct: 434 GFFVCSLVR 442
>gi|424834133|ref|ZP_18258849.1| 16S rRNA methyltransferase B [Clostridium sporogenes PA 3679]
gi|365978908|gb|EHN14974.1| 16S rRNA methyltransferase B [Clostridium sporogenes PA 3679]
Length = 442
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 141/467 (30%), Positives = 242/467 (51%), Gaps = 35/467 (7%)
Query: 61 RAVSAVRLMRIQFGGAFADL-LNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIV 119
R V+ L + + GA++++ LNKK S +L D D L+T+IV
Sbjct: 5 REVALDVLKAVLYEGAYSNIVLNKKLNKS-----------------NLKDNDKALITEIV 47
Query: 120 GGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRL 178
GT++++ LD I + + +M+ + ILRI Y+I LD +P +A V+E V +
Sbjct: 48 YGTLKYKETLD--IIIQSYLRNPIKTMDKNIANILRITIYQIRYLDKIPSFAAVNEAVEM 105
Query: 179 AKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWT 238
+K + LVNG+LR + N NDR + IYS+P W+++ +
Sbjct: 106 SK-KISIKYSKLVNGVLRNYIRTYKNKKFY------NDRNNLEKFSFIYSYPKWLIKIFI 158
Query: 239 KYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFIR 298
G E A K++ N P+ ++R N+ K + + +L + E E I+
Sbjct: 159 SQYGIEIAEKILKGLNERPNITVRVNNLK-IDYDEAFEKLGEYGYNI--EEGYICPEAIQ 215
Query: 299 VKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLS 358
+ G +N+ + L EG VQDESA LV ++ ++D C+APGGKT +++ ++
Sbjct: 216 IIKG-KNIEKNPLFIEGDITVQDESAMLVAPSMELTEESIVLDLCSAPGGKTTHISEIIN 274
Query: 359 GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSG 418
+ +YA D+++ +L ++ + AK N+ I T +D F K D+VL+D PCSG
Sbjct: 275 NKSKIYAYDVHENKLSLIEDNAKRLGANN-IETNVSDASIFNKKLKEKADRVLIDVPCSG 333
Query: 419 LGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVE 478
LG++ K+ +++W + +++ + +Q ++++ + +K GG+L+YSTC+++ EENEE +
Sbjct: 334 LGIIRKKPEIKWTKNEKEIRNIIDIQRKIMNNGASYLKEGGILLYSTCTLNKEENEENIN 393
Query: 479 AFLLRHPEFSIDP-ADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARL 524
FL +H F I+P G V + K GF P +DG F A+L
Sbjct: 394 WFLKKHKNFKIEPLYYGDVDNIIYHKEGFVSILP-NDKMDGFFIAKL 439
>gi|126649674|ref|ZP_01721910.1| 16S rRNA m(5)C 967 methyltransferase [Bacillus sp. B14905]
gi|126593393|gb|EAZ87338.1| 16S rRNA m(5)C 967 methyltransferase [Bacillus sp. B14905]
Length = 453
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 135/420 (32%), Positives = 221/420 (52%), Gaps = 23/420 (5%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
++ +D L+T++ GT++ + LD+ + S++ + +LRI Y++ L
Sbjct: 44 IEAKDRALLTELTYGTLQHKMTLDYYLEPFIR-----GSIDHWVRWLLRISLYQMQYLTR 98
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P +A V+E V +AK G + VNGILR ++ +P + + R LA
Sbjct: 99 IPAHAAVNEAVEIAKRRGHRGIASTVNGILRSVL------RQGVPAITDIENPIER-LAI 151
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
SHP+W+V+R+ G E A ++ NN P ++R N+ K VT + +L L
Sbjct: 152 ETSHPIWLVQRFVDNYGLEVATGMLHENNVPPMQTVRVNTTK-VTVEQAIAELEAEGLTA 210
Query: 286 PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAA 345
S + E + + G A KEG +QDES+ + V++P PG ++D CAA
Sbjct: 211 KQ--SEVIPECLHLTNGQPARTHA--FKEGHITIQDESSMIPANVLNPSPGMRVLDMCAA 266
Query: 346 PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTV 405
PGGKT ++A + +G + A D++ +L +++ + ++ +I T D R +
Sbjct: 267 PGGKTTHLAEIMKNEGSILATDLHPHKLDLIDHNTERLGLD-IIETAPIDGRKAPEFLQA 325
Query: 406 KC-DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464
+ D VL+DAPCSGLGV+ ++ D+++ +R ED+E L+ +Q LLDAA+ ++K G LVYS
Sbjct: 326 ESYDAVLVDAPCSGLGVMRRKPDIKYTKREEDLENLQTIQLALLDAATKVLKIEGKLVYS 385
Query: 465 TCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTK--HGFFFSDPIKHSLDGAFAA 522
TC++D +ENE V+AFL HPE + L P+ K +G P DG F A
Sbjct: 386 TCTVDKQENEGTVKAFLATHPEMEAIQLESL-PTKLAEKQANGMLQVFPQDFGSDGFFVA 444
>gi|394993912|ref|ZP_10386651.1| 16S rRNA methyltransferase B [Bacillus sp. 916]
gi|393805236|gb|EJD66616.1| 16S rRNA methyltransferase B [Bacillus sp. 916]
Length = 447
Score = 192 bits (489), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 123/392 (31%), Positives = 215/392 (54%), Gaps = 20/392 (5%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLI-CLLCHDEKTFSSMEPLLLQILRIGFYE 160
+T L D+D L+T++V GT++ + LD+++ +C K ++P ++Q+LR+ Y+
Sbjct: 32 IKTNTLSDQDRGLLTELVYGTLQNKIALDYMLKPFICKPNK----VKPWVIQLLRLSAYQ 87
Query: 161 IVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQ 219
+ L+ +P A + E V +AK G + VNGILR L + + ++E
Sbjct: 88 MEYLEKIPDRAAIHEAVEIAKKRGHKGIASFVNGILRSL---QREGAPSFAEIED----P 140
Query: 220 ARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLN 279
L+T SHP W+V+ W + G E A ++ + P +LR N K R ++ ++
Sbjct: 141 VLRLSTETSHPEWLVKEWVEAYGFEAAEQICRIHLIPPKQTLRVNHIKS-DRETVLNEME 199
Query: 280 LLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSI 339
L+ L D +K + N + G ++QDES+ LV +DP+PG+++
Sbjct: 200 NAGLEA-EAGDLSPDAIKLLKGSIANT---AFFQNGRVSIQDESSMLVARALDPKPGETV 255
Query: 340 VDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF 399
+D CAAPGGK+ ++A + +G + ++D+++ +++++ E A+ + ++I D R
Sbjct: 256 LDACAAPGGKSAHIAELMENEGSLTSLDLHRHKVKLIKEGAERLGL-TIIDAQTMDARKA 314
Query: 400 AD-NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPG 458
+ + D+VL+DAPCSG GV+ ++ D+++ + ED L +Q +L + LVK G
Sbjct: 315 GEVFGAERFDRVLVDAPCSGFGVIRRKPDMKYTKTPEDSRRLSEIQLGILREIAPLVKKG 374
Query: 459 GVLVYSTCSIDPEENEERVEAFLLRHPEFSID 490
G LVYSTC++D ENEE + AF+ HPEF D
Sbjct: 375 GTLVYSTCTMDRTENEEVMHAFIQEHPEFEPD 406
>gi|386579362|ref|YP_006075767.1| tRNA and rRNA cytosine-C5-methylase [Streptococcus suis JS14]
gi|386581426|ref|YP_006077830.1| tRNA and rRNA cytosine-C5-methylase [Streptococcus suis SS12]
gi|386587657|ref|YP_006084058.1| tRNA and rRNA cytosine-C5-methylase [Streptococcus suis A7]
gi|319757554|gb|ADV69496.1| tRNA and rRNA cytosine-C5-methylase [Streptococcus suis JS14]
gi|353733572|gb|AER14582.1| tRNA and rRNA cytosine-C5-methylase [Streptococcus suis SS12]
gi|354984818|gb|AER43716.1| tRNA and rRNA cytosine-C5-methylase [Streptococcus suis A7]
Length = 436
Score = 192 bits (489), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 137/427 (32%), Positives = 216/427 (50%), Gaps = 38/427 (8%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L +D L T++V GT+ + L+ + D + ++ + +L + Y++V LD
Sbjct: 39 LSAQDKGLATELVYGTVSRKITLEWYLAHFIEDRE---KLDTWVYYLLMLSLYQLVYLDK 95
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P +AVV+E V +AK +PG VN ILRKL +SLP P + + + + L+
Sbjct: 96 LPTHAVVNEAVNIAK--RKPGTDKFVNAILRKL----SQDSLPKP---ADIKRKNKRLSV 146
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVM-----QLNL 280
YS PVW+V+ G E A K+ + S+R + V R + QL+
Sbjct: 147 QYSVPVWLVQTLIAEYGDERAEKIFQSLHDRNKASVRVTDGQQVERLAEELGAQHSQLSP 206
Query: 281 LKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIV 340
+ L PH D F KEGL +QDE++ LV +D Q + I+
Sbjct: 207 VGLVKPHGHFAGTDYF----------------KEGLITIQDETSQLVAPTLDIQGDEIIL 250
Query: 341 DCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADL-RTF 399
D CAAPGGKT +MAS L+ G VYA+D+ +L ++ E A+ + I T D R
Sbjct: 251 DACAAPGGKTCHMASYLT-DGKVYALDLYDHKLNLIEENARRLGLADKIETKGLDASRVH 309
Query: 400 ADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGG 459
+ DK+L+DAPCSG+G++ ++ D+R+N+ D + LK +Q ++LD+ +K GG
Sbjct: 310 EEFGPDTFDKILVDAPCSGIGLIRRKPDIRYNKASMDFDSLKTIQLQILDSVCQSLKIGG 369
Query: 460 VLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGA 519
++ YSTC+I +EN+E ++ FL HP F + P + G P ++ DG
Sbjct: 370 IITYSTCTIIAKENQEVIQEFLQNHPNFEQVTLEH--PQTDIMVDGCLLITPEQYKTDGF 427
Query: 520 FAARLVR 526
F +L R
Sbjct: 428 FIGQLRR 434
>gi|308173537|ref|YP_003920242.1| RNA-binding protein [Bacillus amyloliquefaciens DSM 7]
gi|384159442|ref|YP_005541515.1| 16S rRNA methyltransferase B [Bacillus amyloliquefaciens TA208]
gi|384164123|ref|YP_005545502.1| RNA-binding Sun protein; 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Bacillus
amyloliquefaciens LL3]
gi|384168489|ref|YP_005549867.1| 16S rRNA methyltransferase B [Bacillus amyloliquefaciens XH7]
gi|307606401|emb|CBI42772.1| RNA-binding Sun protein; 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Bacillus
amyloliquefaciens DSM 7]
gi|328553530|gb|AEB24022.1| 16S rRNA methyltransferase B [Bacillus amyloliquefaciens TA208]
gi|328911678|gb|AEB63274.1| RNA-binding Sun protein; 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Bacillus
amyloliquefaciens LL3]
gi|341827768|gb|AEK89019.1| 16S rRNA methyltransferase B [Bacillus amyloliquefaciens XH7]
Length = 447
Score = 192 bits (489), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 121/391 (30%), Positives = 216/391 (55%), Gaps = 18/391 (4%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
+T L D+D L+T++V GT++ + LD+++ + + ++P ++Q+LR+ Y++
Sbjct: 32 IKTNTLSDQDRGLLTELVYGTLQNKIALDYMLKPFI---RKPNKVKPWVIQLLRLSAYQM 88
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
L+ +P A + E V +AK G + VNGILR L + + ++E
Sbjct: 89 EYLEKIPDRAAIHEAVEIAKKRGHKGIASFVNGILRSL---QREGAPSFAEIED----PV 141
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
L+T SHP W+V+ W + G E A K+ + P +LR N R + L+ ++
Sbjct: 142 LRLSTETSHPEWLVKEWVEAYGFETAEKICRIHLVPPKQTLRVN-RIKADKETLLNEMEN 200
Query: 281 LKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIV 340
L+ E + I++ G ++ + G ++QDES+ LV +DP+PG++++
Sbjct: 201 AGLEA--EAGDLSPDAIKLLKG--SIASTEFFQNGQVSIQDESSMLVARALDPKPGETVL 256
Query: 341 DCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 400
D CAAPGGK+ ++A + +G + ++D+++ +++++ E A+ + ++I D R
Sbjct: 257 DACAAPGGKSAHIAELMKNEGSLTSLDLHRHKVKLIQEGAERLGL-TIIDAQTMDARKAG 315
Query: 401 DN-STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGG 459
D + D++L+DAPCSG GV+ ++ D+++ + ED L +Q +L + LVK GG
Sbjct: 316 DAFGAERFDRILVDAPCSGFGVIRRKPDMKYTKTPEDSRRLSEIQLGILREIAPLVKKGG 375
Query: 460 VLVYSTCSIDPEENEERVEAFLLRHPEFSID 490
LVYSTC++D ENEE + AF+ HPEF D
Sbjct: 376 TLVYSTCTMDRTENEEVMHAFIQEHPEFEPD 406
>gi|229006142|ref|ZP_04163829.1| Ribosomal RNA small subunit methyltransferase B [Bacillus mycoides
Rock1-4]
gi|228755095|gb|EEM04453.1| Ribosomal RNA small subunit methyltransferase B [Bacillus mycoides
Rock1-4]
Length = 415
Score = 192 bits (489), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 131/390 (33%), Positives = 208/390 (53%), Gaps = 28/390 (7%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+D +D+ L+T+IV GTI+ R LD+ + +E + +LR+ Y+++ LD
Sbjct: 7 IDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLR-----KKVEAWVKILLRLSLYQMLYLDR 61
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A + E V +AK G +VNG+LR + +P LE R ++
Sbjct: 62 VPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSI------QREGVPSLEEIQNPVER-VSV 114
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
SHP W+V+ W E A K+ N P + R N K +T + + L +Q
Sbjct: 115 ATSHPEWLVQEWVSAYDLETAQKMCEVNMVPPVPTARVNVDK-ITVEEAIALLEREGVQA 173
Query: 286 PH-ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 344
+LS ++ I+++ G NV K G ++QDES+ LV + P+ G ++D CA
Sbjct: 174 NRGDLS---EDAIQIEKG--NVAHTEAFKNGFLSIQDESSMLVARALKPEEGDMVLDSCA 228
Query: 345 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT----FA 400
APGGKT ++A L G G V ++D++ ++R++ + AK ++ + I T D R FA
Sbjct: 229 APGGKTTHIAERLKGTGQVTSLDLHPHKVRLIQQQAKRLELEN-IETKALDARKVQEHFA 287
Query: 401 DNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGV 460
+ S DK+L+DAPCSG GV+ ++ D++ + D E L +Q +L+ + L+K GG
Sbjct: 288 NES---FDKILVDAPCSGFGVIRRKPDIKLGKEKGDSERLSTIQLSILEKVAPLLKAGGR 344
Query: 461 LVYSTCSIDPEENEERVEAFLLRHPEFSID 490
LVYSTC+I+ ENE+ +E FL HPEF D
Sbjct: 345 LVYSTCTIEKIENEQVIEQFLQEHPEFEWD 374
>gi|385264700|ref|ZP_10042787.1| RsmB [Bacillus sp. 5B6]
gi|385149196|gb|EIF13133.1| RsmB [Bacillus sp. 5B6]
Length = 447
Score = 192 bits (489), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 121/391 (30%), Positives = 214/391 (54%), Gaps = 18/391 (4%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
+T L D+D L+T++V GT++ + LD+++ + + ++P ++Q+LR+ Y++
Sbjct: 32 IKTNTLSDQDRGLLTELVYGTLQNKIALDYMLKPFI---RKPNKVKPWVIQLLRLSAYQM 88
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
L+ +P A + E V +AK G + VNGILR L + + ++E
Sbjct: 89 EYLEKIPDRAAIHEAVEIAKKRGHKGIASFVNGILRSL---QREGAPSFAEIED----PV 141
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
L+T SHP W+V+ W + G E A K+ + P +LR N K R ++ ++
Sbjct: 142 LRLSTETSHPEWLVKEWVEAYGFEAAEKICRIHLIPPKQTLRVNHIKS-DRETVLNEMEK 200
Query: 281 LKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIV 340
L+ L D +K + N + G ++QDES+ LV +DP+PG++++
Sbjct: 201 AGLEA-EAGDLSPDAIKLLKGSIANT---AFFQNGRVSIQDESSMLVARALDPKPGETVL 256
Query: 341 DCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 400
D CAAPGGK+ ++A + +G + ++D+++ +++++ E A+ + ++I D R
Sbjct: 257 DACAAPGGKSAHIAELMQNEGSLTSLDLHRHKVKLIKEGAERLGL-TIIDAQTMDARKAG 315
Query: 401 DN-STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGG 459
+ + D++L+DAPCSG GV+ ++ D+++ + ED L +Q +L + LVK GG
Sbjct: 316 EAFGAERFDRILVDAPCSGFGVIRRKPDMKYTKTPEDSRRLSEIQLGILREIAPLVKKGG 375
Query: 460 VLVYSTCSIDPEENEERVEAFLLRHPEFSID 490
LVYSTC++D ENEE + AF+ HPEF D
Sbjct: 376 TLVYSTCTMDRTENEEVMHAFIQEHPEFEPD 406
>gi|431600935|ref|ZP_19522420.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1861]
gi|430590092|gb|ELB28177.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1861]
Length = 452
Score = 192 bits (488), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 143/466 (30%), Positives = 245/466 (52%), Gaps = 39/466 (8%)
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVG 120
R ++ + L R+ GGA+++LL NEM + +L+ +D+ L T+++
Sbjct: 13 RYMALLTLERVNKGGAYSNLLL--------NEM--------IKQSELNQKDVGLFTELIY 56
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLA 179
GTI +R L+ + L K ++ + +L + Y++ LD +P +A+++E V +A
Sbjct: 57 GTISHQRLLEFYVAPLIAKAK---KVDDWVKTLLYLSVYQLEFLDKVPAHAILNEAVEIA 113
Query: 180 KVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTK 239
KV PG G VNG+LR + P L+G R L+ S P+WM +R
Sbjct: 114 KVKGNPGTGKFVNGVLR------NYQRQGAPDLQGITDPIER-LSVKISLPLWMTKRLVD 166
Query: 240 YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFIRV 299
+G EE KL + S R ++R+ ++R + L + ++ E S I
Sbjct: 167 QIGYEETEKLGLSLYQPSHASARVDTRR-LSRDQAITVLQ--EEEITAEKSQVSPYGIIA 223
Query: 300 KTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCL-- 357
K G ++ + L +G+ +QDES+ LV + +P ++D CAAPGGKT ++AS L
Sbjct: 224 KKG--HLASSSLFHDGVMTIQDESSMLVAPSMQIEPEHHVLDACAAPGGKTTHIASFLDP 281
Query: 358 SGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVKCDKVLLDAPC 416
S G V A+D+++ +++++ E A V+S + D R + + D++L+DAPC
Sbjct: 282 SCGGEVIALDVHEHKVKLIEENATRLGVSSAVYAQKMDAREVSKQFEPEQFDRILVDAPC 341
Query: 417 SGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEER 476
SGLG+L ++ D+R+ ++ +++ L +Q E+L++ + +K G+L YSTC+I EEN++
Sbjct: 342 SGLGLLRRKPDIRYKKQSDELANLPKIQLEILESCAPALKSSGILTYSTCTILKEENQDV 401
Query: 477 VEAFLLRHPEFS-IDP-ADGLVPSDFVTKHGFFFSDPIKHSLDGAF 520
V AFL HP+F ID D ++ S V K + P + DG F
Sbjct: 402 VSAFLETHPDFERIDVLTDPMLQSSIVEKMLTLY--PHQFYTDGFF 445
>gi|257882565|ref|ZP_05662218.1| rRNA SAM-dependent methyltransferase [Enterococcus faecium
1,231,502]
gi|424797357|ref|ZP_18222955.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium S447]
gi|424952100|ref|ZP_18367138.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium R496]
gi|424957014|ref|ZP_18371766.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium R446]
gi|424967575|ref|ZP_18381268.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium P1140]
gi|424995169|ref|ZP_18407066.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium ERV168]
gi|424999160|ref|ZP_18410800.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium ERV165]
gi|425001027|ref|ZP_18412563.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium ERV161]
gi|425004970|ref|ZP_18416253.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium ERV102]
gi|425011289|ref|ZP_18422198.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E422]
gi|425017691|ref|ZP_18428187.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium C621]
gi|425033033|ref|ZP_18438036.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium 515]
gi|431777739|ref|ZP_19565990.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E2560]
gi|431783163|ref|ZP_19571285.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E6012]
gi|431784119|ref|ZP_19572164.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E6045]
gi|257818223|gb|EEV45551.1| rRNA SAM-dependent methyltransferase [Enterococcus faecium
1,231,502]
gi|402921204|gb|EJX41663.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium S447]
gi|402927707|gb|EJX47642.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium R496]
gi|402944646|gb|EJX63044.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium R446]
gi|402954065|gb|EJX71720.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium P1140]
gi|402978068|gb|EJX93833.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium ERV168]
gi|402980118|gb|EJX95747.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium ERV165]
gi|402987639|gb|EJY02686.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium ERV161]
gi|402988011|gb|EJY03040.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium ERV102]
gi|402997454|gb|EJY11775.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E422]
gi|403003899|gb|EJY17748.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium C621]
gi|403011440|gb|EJY24750.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium 515]
gi|430639032|gb|ELB74923.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E2560]
gi|430645836|gb|ELB81338.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E6012]
gi|430650160|gb|ELB85514.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E6045]
Length = 452
Score = 192 bits (488), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 134/431 (31%), Positives = 230/431 (53%), Gaps = 35/431 (8%)
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVG 120
R ++ + L R+ GGA+++LL NEM + +L+ +D+ L T+++
Sbjct: 13 RYMALLTLERVNKGGAYSNLLL--------NEM--------IKQSELNQKDVGLFTELIY 56
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLA 179
GTI +R L+ + L K +LL + Y++ LD +P +A+++E V +A
Sbjct: 57 GTISHQRLLEFYVAPLIAKAKKVDDWVKMLL---YLSVYQLEFLDKVPAHAILNEAVEIA 113
Query: 180 KVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTK 239
KV PG G VNG+LR + P L+G R L+ S P+WM +R
Sbjct: 114 KVKGNPGTGKFVNGVLR------NYQRQGAPDLQGIADPIER-LSVKISLPLWMTKRLVD 166
Query: 240 YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFIRV 299
+G EE KL + S R ++R+ ++R + L + ++ E S I
Sbjct: 167 QIGYEETEKLGLSLYQPSHASARVDTRR-LSRDQAITVLQ--EEEITAEKSQVSPYGIVA 223
Query: 300 KTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCL-- 357
K G ++ + L +G+ +QDES+ LV + +P ++D CAAPGGKT ++AS L
Sbjct: 224 KKG--HLASSSLFHDGVMTIQDESSMLVAPSMQIEPEHHVLDACAAPGGKTTHIASFLDP 281
Query: 358 SGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVKCDKVLLDAPC 416
S G V A+D+++ +++++ + A V+S + D R + + D++L+DAPC
Sbjct: 282 SCGGEVVALDVHEHKVKLIEDNAARLGVSSAVYAQKMDAREVSKQFEAEQFDRILVDAPC 341
Query: 417 SGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEER 476
SGLG+L ++ D+R+ ++ +++ L +Q E+L++ + +K G+L YSTC+I EEN++
Sbjct: 342 SGLGLLRRKPDIRYKKQPDELANLPKIQLEILESCAPTLKSSGILTYSTCTILKEENQDV 401
Query: 477 VEAFLLRHPEF 487
V AFL RHP+F
Sbjct: 402 VSAFLERHPDF 412
>gi|146318081|ref|YP_001197793.1| tRNA and rRNA cytosine-C5-methylase [Streptococcus suis 05ZYH33]
gi|146320260|ref|YP_001199971.1| tRNA and rRNA cytosine-C5-methylase [Streptococcus suis 98HAH33]
gi|253751274|ref|YP_003024415.1| ribosomal RNA small subunit methyltransferase [Streptococcus suis
SC84]
gi|253753175|ref|YP_003026315.1| ribosomal RNA small subunit methyltransferase [Streptococcus suis
P1/7]
gi|253754998|ref|YP_003028138.1| ribosomal RNA small subunit methyltransferase [Streptococcus suis
BM407]
gi|386577381|ref|YP_006073786.1| rRNA SAM-dependent methyltransferase [Streptococcus suis GZ1]
gi|403061067|ref|YP_006649283.1| 16S rRNA methyltransferase B [Streptococcus suis S735]
gi|145688887|gb|ABP89393.1| tRNA and rRNA cytosine-C5-methylase [Streptococcus suis 05ZYH33]
gi|145691066|gb|ABP91571.1| tRNA and rRNA cytosine-C5-methylase [Streptococcus suis 98HAH33]
gi|251815563|emb|CAZ51146.1| putative ribosomal RNA small subunit methyltransferase
[Streptococcus suis SC84]
gi|251817462|emb|CAZ55203.1| putative ribosomal RNA small subunit methyltransferase
[Streptococcus suis BM407]
gi|251819420|emb|CAR44892.1| putative ribosomal RNA small subunit methyltransferase
[Streptococcus suis P1/7]
gi|292557843|gb|ADE30844.1| rRNA SAM-dependent methyltransferase [Streptococcus suis GZ1]
gi|402808393|gb|AFQ99884.1| 16S rRNA methyltransferase B [Streptococcus suis S735]
Length = 437
Score = 192 bits (488), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 137/427 (32%), Positives = 216/427 (50%), Gaps = 38/427 (8%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L +D L T++V GT+ + L+ + D + ++ + +L + Y++V LD
Sbjct: 40 LSAQDKGLATELVYGTVSRKITLEWYLAHFIEDRE---KLDTWVYYLLMLSLYQLVYLDK 96
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P +AVV+E V +AK +PG VN ILRKL +SLP P + + + + L+
Sbjct: 97 LPTHAVVNEAVNIAK--RKPGTDKFVNAILRKL----SQDSLPKP---ADIKRKNKRLSV 147
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVM-----QLNL 280
YS PVW+V+ G E A K+ + S+R + V R + QL+
Sbjct: 148 QYSVPVWLVQTLIAEYGDERAEKIFQSLHDRNKASVRVTDGQQVERLAEELGAQHSQLSP 207
Query: 281 LKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIV 340
+ L PH D F KEGL +QDE++ LV +D Q + I+
Sbjct: 208 VGLVKPHGHFAGTDYF----------------KEGLITIQDETSQLVAPTLDIQGDEIIL 251
Query: 341 DCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADL-RTF 399
D CAAPGGKT +MAS L+ G VYA+D+ +L ++ E A+ + I T D R
Sbjct: 252 DACAAPGGKTCHMASYLT-DGKVYALDLYDHKLNLIEENARRLGLADKIETKGLDASRVH 310
Query: 400 ADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGG 459
+ DK+L+DAPCSG+G++ ++ D+R+N+ D + LK +Q ++LD+ +K GG
Sbjct: 311 EEFGPDTFDKILVDAPCSGIGLIRRKPDIRYNKASMDFDSLKTIQLQILDSVCQSLKIGG 370
Query: 460 VLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGA 519
++ YSTC+I +EN+E ++ FL HP F + P + G P ++ DG
Sbjct: 371 IITYSTCTIIAKENQEVIQEFLQNHPNFEQVTLEH--PQTDIMVDGCLLITPEQYKTDGF 428
Query: 520 FAARLVR 526
F +L R
Sbjct: 429 FIGQLRR 435
>gi|293572652|ref|ZP_06683620.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E980]
gi|430842687|ref|ZP_19460599.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1007]
gi|431083419|ref|ZP_19495990.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1604]
gi|431115946|ref|ZP_19497851.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1613]
gi|431739264|ref|ZP_19528202.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1972]
gi|431742272|ref|ZP_19531166.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E2039]
gi|291607238|gb|EFF36592.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E980]
gi|430492911|gb|ELA69252.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1007]
gi|430565240|gb|ELB04409.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1604]
gi|430568552|gb|ELB07595.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1613]
gi|430596241|gb|ELB34084.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1972]
gi|430600274|gb|ELB37927.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E2039]
Length = 452
Score = 192 bits (488), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 143/466 (30%), Positives = 245/466 (52%), Gaps = 39/466 (8%)
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVG 120
R ++ + L R+ GGA+++LL NEM + +L+ +D+ L T+++
Sbjct: 13 RYMALLTLERVNKGGAYSNLLL--------NEM--------IKQSELNQKDVGLFTELIY 56
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLA 179
GTI +R L+ + L K ++ + +L + Y++ LD +P +A+++E V +A
Sbjct: 57 GTISHQRLLEFYVAPLIAKAK---KVDDWVKTLLYLSVYQLEFLDKVPAHAILNEAVEIA 113
Query: 180 KVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTK 239
KV PG G VNG+LR + P L+G R L+ S P+WM +R
Sbjct: 114 KVKGNPGTGKFVNGVLR------NYQRQGAPDLQGITDPIER-LSVKISLPLWMTKRLVD 166
Query: 240 YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFIRV 299
+G EE KL + S R ++R+ ++R + L + ++ E S I
Sbjct: 167 QIGYEETEKLGLSLYQPSHASARVDTRR-LSRDQAITVLQ--EEEITAEKSQVSPYGIVA 223
Query: 300 KTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCL-- 357
K G ++ + L +G+ +QDES+ LV + +P ++D CAAPGGKT ++AS L
Sbjct: 224 KKG--HLASSSLFHDGVMTIQDESSMLVAPSMQIEPEHHVLDACAAPGGKTTHIASFLDP 281
Query: 358 SGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVKCDKVLLDAPC 416
S G V A+D+++ +++++ E A V+S + D R + + D++L+DAPC
Sbjct: 282 SCGGEVIALDVHEHKVKLIEENATRLGVSSAVYAQKMDAREVSKQFEPEQFDRILVDAPC 341
Query: 417 SGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEER 476
SGLG+L ++ D+R+ ++ +++ L +Q E+L++ + +K G+L YSTC+I EEN++
Sbjct: 342 SGLGLLRRKPDIRYKKQPDELANLPKIQLEILESCAPALKSSGILTYSTCTILKEENQDV 401
Query: 477 VEAFLLRHPEFS-IDP-ADGLVPSDFVTKHGFFFSDPIKHSLDGAF 520
V AFL HP+F ID D ++ S V K + P + DG F
Sbjct: 402 VSAFLETHPDFERIDVLTDPMLQSSIVEKMLTLY--PHQFYTDGFF 445
>gi|294623688|ref|ZP_06702521.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium U0317]
gi|291596903|gb|EFF28121.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium U0317]
Length = 445
Score = 192 bits (488), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 134/431 (31%), Positives = 230/431 (53%), Gaps = 35/431 (8%)
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVG 120
R ++ + L R+ GGA+++LL NEM + +L+ +D+ L T+++
Sbjct: 6 RYMALLTLERVNKGGAYSNLLL--------NEM--------IKQSELNQKDVGLFTELIY 49
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLA 179
GTI +R L+ + L K +LL + Y++ LD +P +A+++E V +A
Sbjct: 50 GTISHQRLLEFYVAPLIAKAKKVDDWVKMLL---YLSVYQLEFLDKVPAHAILNEAVEIA 106
Query: 180 KVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTK 239
KV PG G VNG+LR + P L+G R L+ S P+WM +R
Sbjct: 107 KVKGNPGTGKFVNGVLR------NYQRQGAPDLQGIADPIER-LSVKISLPLWMTKRLVD 159
Query: 240 YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFIRV 299
+G EE KL + S R ++R+ ++R + L + ++ E S I
Sbjct: 160 QIGYEETEKLGLSLYQPSHASARVDTRR-LSRDQAITVLQ--EEEITAEKSQVSPYGIVA 216
Query: 300 KTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCL-- 357
K G ++ + L +G+ +QDES+ LV + +P ++D CAAPGGKT ++AS L
Sbjct: 217 KKG--HLASSSLFHDGVMTIQDESSMLVAPSMQIEPEHHVLDACAAPGGKTTHIASFLDP 274
Query: 358 SGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVKCDKVLLDAPC 416
S G V A+D+++ +++++ + A V+S + D R + + D++L+DAPC
Sbjct: 275 SCGGEVVALDVHEHKVKLIEDNAARLGVSSAVYAQKMDAREVSKQFEAEQFDRILVDAPC 334
Query: 417 SGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEER 476
SGLG+L ++ D+R+ ++ +++ L +Q E+L++ + +K G+L YSTC+I EEN++
Sbjct: 335 SGLGLLRRKPDIRYKKQPDELANLPKIQLEILESCAPTLKSSGILTYSTCTILKEENQDV 394
Query: 477 VEAFLLRHPEF 487
V AFL RHP+F
Sbjct: 395 VSAFLERHPDF 405
>gi|339627428|ref|YP_004719071.1| ribosomal RNA small subunit methyltransferase b [Sulfobacillus
acidophilus TPY]
gi|379008196|ref|YP_005257647.1| sun protein [Sulfobacillus acidophilus DSM 10332]
gi|339285217|gb|AEJ39328.1| ribosomal RNA small subunit methyltransferase b [Sulfobacillus
acidophilus TPY]
gi|361054458|gb|AEW05975.1| sun protein [Sulfobacillus acidophilus DSM 10332]
Length = 449
Score = 192 bits (488), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 146/434 (33%), Positives = 218/434 (50%), Gaps = 44/434 (10%)
Query: 103 RTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIV 162
R K L D LVT +V G R RR+LD I L +EP + ILR+ +++
Sbjct: 34 RVKGLSSADRALVTQLVYGVERQRRFLDAWIGQLRQ-----GPVEPKIRNILRLALFQLH 88
Query: 163 KLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQAR 221
LD +P YA+ E V AK + P A +VN +LR+ R
Sbjct: 89 FLDRIPDYAIFHEAVEAAK-RVNPRAAPMVNAVLRR-----------------AQRQPPT 130
Query: 222 ALAT--IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLN 279
AL+T YSHP W+V RW G + I ++ +N P +LR + + +R ++ +L
Sbjct: 131 ALSTGEAYSHPDWLVDRWRSRYG-DYVIDILRRDNEIPPLTLRVDIAR-TSRETILDELR 188
Query: 280 LLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSI 339
L+ E S ++ E IRVK L + + GL VQDES+ LV +DP+PGQ++
Sbjct: 189 DRGLEA--EPSPYVPEAIRVKGALW-LEDFPPFQSGLVMVQDESSMLVAWALDPKPGQTV 245
Query: 340 VDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF 399
+D GGK L++ G+ + A+D++ RL + ++ +R D
Sbjct: 246 LDMAVGLGGKALHVLERTQGRLRLTAVDLSSERLARFQSVLRERGFDAEVRVEVGDASRL 305
Query: 400 ADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGG 459
+ T + D+VLLDAPCSGLGVL +R D RW ++ ED+ L+ +Q LL A ++KPGG
Sbjct: 306 LVHETERYDRVLLDAPCSGLGVLRRRVDARWKKKPEDLMPLQSMQKRLLAAGLRVLKPGG 365
Query: 460 VLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVP-------SDFVTKHGFFFSDPI 512
VLVYSTCS++PEE A + P + D ++P +++V+ G P
Sbjct: 366 VLVYSTCSVEPEET----WAVIDEAPRWG-GRRDSVIPFLPHPALNEWVSA-GVLALPPG 419
Query: 513 KHSLDGAFAARLVR 526
+DG F ARLV+
Sbjct: 420 ALGMDGFFIARLVK 433
>gi|257886037|ref|ZP_05665690.1| rRNA SAM-dependent methyltransferase [Enterococcus faecium
1,231,501]
gi|430854012|ref|ZP_19471734.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1258]
gi|257821893|gb|EEV49023.1| rRNA SAM-dependent methyltransferase [Enterococcus faecium
1,231,501]
gi|430539689|gb|ELA79929.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1258]
Length = 452
Score = 192 bits (488), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 133/431 (30%), Positives = 232/431 (53%), Gaps = 35/431 (8%)
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVG 120
R ++ + L R+ GGA+++LL NEM + +L+ +D+ L T+++
Sbjct: 13 RYMALLTLERVNKGGAYSNLLL--------NEM--------IKQSELNQKDVGLFTELIY 56
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLA 179
GTI +R L+ + L K ++ + +L + Y++ LD +P +A+++E V +A
Sbjct: 57 GTISHQRLLEFYVAPLIAKAK---KVDDWVKTLLYLSVYQLEFLDKVPAHAILNEAVEIA 113
Query: 180 KVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTK 239
KV PG G VNG+LR + P L+G R L+ S P+WM +R
Sbjct: 114 KVKGNPGTGKFVNGVLR------NYQRQGAPDLQGIADTIER-LSVKISLPLWMTKRLVD 166
Query: 240 YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFIRV 299
+G EE KL + S R ++R+ ++R + L + ++ E S I
Sbjct: 167 QIGYEETEKLGLSLYQPSHASARVDTRR-LSRDQAITVLQ--EEEITAEKSQVSPYGIVA 223
Query: 300 KTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCL-- 357
K G ++ + L +G+ +QDES+ LV + +P ++D CAAPGGKT ++AS L
Sbjct: 224 KKG--HLASSSLFHDGVMTIQDESSMLVAPSMQIEPEHHVLDACAAPGGKTTHIASFLDP 281
Query: 358 SGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVKCDKVLLDAPC 416
S G V A+D+++ +++++ + A V+S + D R + + D++L+DAPC
Sbjct: 282 SCGGEVVALDVHEHKVKLIEDNAARLGVSSTVYAQKMDAREVSKQFEAEQFDRILVDAPC 341
Query: 417 SGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEER 476
SGLG+L ++ D+R+ ++ +++ L +Q E+L++ + +K G+L YSTC+I EEN++
Sbjct: 342 SGLGLLRRKPDIRYKKQPDELANLPKIQLEILESCAPALKSSGILTYSTCTILKEENQDV 401
Query: 477 VEAFLLRHPEF 487
V AFL RHP+F
Sbjct: 402 VSAFLERHPDF 412
>gi|354807034|ref|ZP_09040511.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
curvatus CRL 705]
gi|354514539|gb|EHE86509.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
curvatus CRL 705]
Length = 447
Score = 192 bits (488), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 139/435 (31%), Positives = 219/435 (50%), Gaps = 31/435 (7%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
+ L+ +D +T +V G I+ LD+ + ++ + Q+LR ++
Sbjct: 32 IKQNHLNPQDAGFLTQLVYGVIQHEMTLDYYLAPFIQKPAKLATW---VRQVLRTAVFQQ 88
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
V LD +P +A+ E +AK G LV ILR + LP L
Sbjct: 89 VYLDRVPEHAIFYEATEIAKQMGHAGTAKLVTAILR------NQQRTGLPDLAAIADPIE 142
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
R L+ YS P W+V ++ + LGQ + L+ N + S+R N+R V D V L
Sbjct: 143 R-LSVTYSMPQWLVAKFHQELGQSKLEHLLATINQPANASIRVNTR--VNSVDAV----L 195
Query: 281 LKLQVPHELSLHLDEFIRVKTGL----QNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPG 336
LQ L ++ + V GL ++ L ++G +QDES+ LV + QP
Sbjct: 196 ADLQAD---GLTIEPSVIVAAGLVAHGGHLASGELFEQGAYIIQDESSMLVAPSLQLQPS 252
Query: 337 QSIVDCCAAPGGKTLYMASCL--SGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHA 394
I+D CAAPGGKT +MA+ L S G + A+DI++ ++R++ + AK V VI
Sbjct: 253 DRILDACAAPGGKTTHMATYLDASQGGQITALDIHEHKVRLIEQNAKRLHVADVIDARAL 312
Query: 395 DLRTFADNSTVKC-DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASL 453
D R + + DK+L+DAPCSGLG++ ++ ++++ R+ D+ L+ +Q +L+A +
Sbjct: 313 DARKVGEQFEPETFDKILVDAPCSGLGLMRRKPEIKYGRQAADLLNLQKIQLAILEAVAP 372
Query: 454 LVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPA--DGLVPSDFVTKHGFFFSDP 511
+K GG L YSTC+I PEEN++ V AF+ HPEF I P D +P++ T + D
Sbjct: 373 TLKVGGQLTYSTCTIVPEENQQVVAAFVANHPEFEIVPVALDKPLPANQATPFVQIYPD- 431
Query: 512 IKHSLDGAFAARLVR 526
+ DG F A L R
Sbjct: 432 -DYQTDGFFIACLTR 445
>gi|217967819|ref|YP_002353325.1| sun protein [Dictyoglomus turgidum DSM 6724]
gi|217336918|gb|ACK42711.1| sun protein [Dictyoglomus turgidum DSM 6724]
Length = 430
Score = 192 bits (487), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 128/423 (30%), Positives = 222/423 (52%), Gaps = 36/423 (8%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD 165
DL ++ +T++V G RW+ LD++ + S +LL+++ Y +
Sbjct: 33 DLSLKEKHFITELVYGVTRWKITLDYIWSRFVRRD-NLSLFSKVLLRLVVYHVYFLKDTI 91
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDN---NSLPLPKLEGNDRAQARA 222
+P V+E V +AK + P L+N + R ++ K+N NS+PL
Sbjct: 92 LP--VAVNEIVEIAKKKV-PKEAKLINAVSRNIIREKNNLNLNSIPL------------- 135
Query: 223 LATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLK 282
Y P +++ W Y+G+ EA+K + W N + S+R N+ K +++ DL + LL+
Sbjct: 136 -HIRYGVPDFILEEWFDYIGRGEAVKALSWLNRSHNVSIRVNTLK-ISKKDL--KEKLLE 191
Query: 283 LQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 342
++ + +D+ + ++ G + ++ L EG +Q E++ L +++P+PG ++D
Sbjct: 192 RRIKFKDGNLVDQALIIEDGF-DFERSDLFNEGYFVIQSEASMLPALILNPKPGNRVIDL 250
Query: 343 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN 402
C+APG K+ ++A + QG + ++DINK RLR++ E AK + S+I T D+ +
Sbjct: 251 CSAPGLKSTHLAELMKNQGKIISVDINKNRLRLVEENAKRLGI-SIIETFSQDVLNLPSS 309
Query: 403 STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLV 462
D+VLLDAPCSGLGV+S + +++W + +D+ L +Q ++L+ A L+K G +V
Sbjct: 310 LDRSFDRVLLDAPCSGLGVISHKPEIKWRLKRDDIYNLSEMQVKMLERAGKLLKREGRMV 369
Query: 463 YSTCSIDPEENEERVEAFLLRHPEFSI---DPADGLVPSDFVTKHGFFFSDPIKHSLDGA 519
YSTC+I ENE + FL R+PEF + L P G P K++ DG
Sbjct: 370 YSTCTITWHENESVLLQFLQRNPEFKLVNFKYKGELFP-------GIMKVLPHKYNTDGF 422
Query: 520 FAA 522
F A
Sbjct: 423 FIA 425
>gi|69245428|ref|ZP_00603423.1| Fmu, rRNA SAM-dependent methyltransferase [Enterococcus faecium DO]
gi|257879839|ref|ZP_05659492.1| rRNA SAM-dependent methyltransferase [Enterococcus faecium
1,230,933]
gi|257891680|ref|ZP_05671333.1| rRNA SAM-dependent methyltransferase [Enterococcus faecium
1,231,410]
gi|257894155|ref|ZP_05673808.1| rRNA SAM-dependent methyltransferase [Enterococcus faecium
1,231,408]
gi|260559512|ref|ZP_05831693.1| fmu [Enterococcus faecium C68]
gi|293563686|ref|ZP_06678127.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1162]
gi|293570098|ref|ZP_06681178.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1071]
gi|314938230|ref|ZP_07845530.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium TX0133a04]
gi|314943127|ref|ZP_07849925.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium TX0133C]
gi|314949324|ref|ZP_07852666.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium TX0082]
gi|314952258|ref|ZP_07855272.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium TX0133A]
gi|314992114|ref|ZP_07857564.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium TX0133B]
gi|314996296|ref|ZP_07861352.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium TX0133a01]
gi|383329934|ref|YP_005355818.1| Ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium Aus0004]
gi|389869750|ref|YP_006377173.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium DO]
gi|406579473|ref|ZP_11054704.1| Ribosomal RNA small subunit methyltransferase B [Enterococcus sp.
GMD4E]
gi|406581818|ref|ZP_11056953.1| Ribosomal RNA small subunit methyltransferase B [Enterococcus sp.
GMD3E]
gi|406584220|ref|ZP_11059255.1| Ribosomal RNA small subunit methyltransferase B [Enterococcus sp.
GMD2E]
gi|406589674|ref|ZP_11064102.1| Ribosomal RNA small subunit methyltransferase B [Enterococcus sp.
GMD1E]
gi|410937646|ref|ZP_11369505.1| ribosomal RNA small subunit methyltransferase B [Enterococcus sp.
GMD5E]
gi|415892937|ref|ZP_11550036.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E4453]
gi|416138831|ref|ZP_11599108.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E4452]
gi|424790097|ref|ZP_18216690.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium V689]
gi|424849933|ref|ZP_18274360.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium R501]
gi|424859988|ref|ZP_18283963.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium R499]
gi|424898958|ref|ZP_18322505.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium R497]
gi|424953483|ref|ZP_18368441.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium R494]
gi|424960830|ref|ZP_18375311.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium P1986]
gi|424965095|ref|ZP_18379122.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium P1190]
gi|424970946|ref|ZP_18384420.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium P1139]
gi|424974729|ref|ZP_18387946.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium P1137]
gi|424977459|ref|ZP_18390470.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium P1123]
gi|424979758|ref|ZP_18392592.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium ERV99]
gi|424985891|ref|ZP_18398348.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium ERV69]
gi|424986853|ref|ZP_18399255.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium ERV38]
gi|424992530|ref|ZP_18404587.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium ERV26]
gi|425008269|ref|ZP_18419362.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium ERV1]
gi|425013389|ref|ZP_18424121.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E417]
gi|425020447|ref|ZP_18430752.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium C497]
gi|425030251|ref|ZP_18435445.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium C1904]
gi|425036355|ref|ZP_18441118.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium 514]
gi|425039086|ref|ZP_18443651.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium 513]
gi|425041968|ref|ZP_18446340.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium 511]
gi|425046818|ref|ZP_18450806.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium 510]
gi|425048047|ref|ZP_18451972.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium 509]
gi|425053657|ref|ZP_18457187.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium 506]
gi|425061726|ref|ZP_18464934.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium 503]
gi|427397665|ref|ZP_18890147.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
durans FB129-CNAB-4]
gi|430832554|ref|ZP_19450597.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E0333]
gi|430845349|ref|ZP_19463243.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1050]
gi|430847142|ref|ZP_19464989.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1133]
gi|430856282|ref|ZP_19473980.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1392]
gi|430861041|ref|ZP_19478633.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1573]
gi|430964174|ref|ZP_19487622.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1576]
gi|431014797|ref|ZP_19490339.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1578]
gi|431239339|ref|ZP_19503642.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1622]
gi|431265361|ref|ZP_19506063.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1623]
gi|431312202|ref|ZP_19508852.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1626]
gi|431560990|ref|ZP_19519622.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1731]
gi|431747439|ref|ZP_19536233.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E2134]
gi|431749938|ref|ZP_19538668.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E2297]
gi|431756190|ref|ZP_19544828.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E2883]
gi|431768618|ref|ZP_19557053.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1321]
gi|431771744|ref|ZP_19560121.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1644]
gi|431774675|ref|ZP_19562980.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E2369]
gi|431780435|ref|ZP_19568614.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E4389]
gi|447913820|ref|YP_007395232.1| Ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium NRRL B-2354]
gi|68195810|gb|EAN10246.1| Fmu, rRNA SAM-dependent methyltransferase [Enterococcus faecium DO]
gi|257814067|gb|EEV42825.1| rRNA SAM-dependent methyltransferase [Enterococcus faecium
1,230,933]
gi|257828040|gb|EEV54666.1| rRNA SAM-dependent methyltransferase [Enterococcus faecium
1,231,410]
gi|257830534|gb|EEV57141.1| rRNA SAM-dependent methyltransferase [Enterococcus faecium
1,231,408]
gi|260074611|gb|EEW62932.1| fmu [Enterococcus faecium C68]
gi|291587470|gb|EFF19354.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1071]
gi|291604370|gb|EFF33863.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1162]
gi|313589540|gb|EFR68385.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium TX0133a01]
gi|313593328|gb|EFR72173.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium TX0133B]
gi|313595600|gb|EFR74445.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium TX0133A]
gi|313598135|gb|EFR76980.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium TX0133C]
gi|313642426|gb|EFS07006.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium TX0133a04]
gi|313644273|gb|EFS08853.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium TX0082]
gi|364090928|gb|EHM33455.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E4452]
gi|364092975|gb|EHM35290.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E4453]
gi|378939628|gb|AFC64700.1| Ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium Aus0004]
gi|388534999|gb|AFK60191.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium DO]
gi|402916518|gb|EJX37384.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium R501]
gi|402921241|gb|EJX41699.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium V689]
gi|402926066|gb|EJX46134.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium R499]
gi|402931982|gb|EJX51528.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium R497]
gi|402938875|gb|EJX57841.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium R494]
gi|402944975|gb|EJX63354.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium P1190]
gi|402945767|gb|EJX64098.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium P1986]
gi|402955686|gb|EJX73197.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium P1137]
gi|402960439|gb|EJX77583.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium P1139]
gi|402964974|gb|EJX81722.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium ERV69]
gi|402965790|gb|EJX82478.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium P1123]
gi|402968200|gb|EJX84694.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium ERV99]
gi|402973075|gb|EJX89224.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium ERV26]
gi|402975682|gb|EJX91622.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium ERV38]
gi|402993008|gb|EJY07659.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium ERV1]
gi|403001090|gb|EJY15165.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E417]
gi|403003830|gb|EJY17685.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium C1904]
gi|403009253|gb|EJY22712.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium C497]
gi|403014990|gb|EJY27938.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium 514]
gi|403017443|gb|EJY30190.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium 513]
gi|403023155|gb|EJY35441.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium 510]
gi|403024990|gb|EJY37102.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium 511]
gi|403029317|gb|EJY41078.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium 506]
gi|403031773|gb|EJY43363.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium 509]
gi|403040652|gb|EJY51714.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium 503]
gi|404455509|gb|EKA02356.1| Ribosomal RNA small subunit methyltransferase B [Enterococcus sp.
GMD4E]
gi|404459006|gb|EKA05379.1| Ribosomal RNA small subunit methyltransferase B [Enterococcus sp.
GMD3E]
gi|404464410|gb|EKA09951.1| Ribosomal RNA small subunit methyltransferase B [Enterococcus sp.
GMD2E]
gi|404470468|gb|EKA15100.1| Ribosomal RNA small subunit methyltransferase B [Enterococcus sp.
GMD1E]
gi|410733779|gb|EKQ75701.1| ribosomal RNA small subunit methyltransferase B [Enterococcus sp.
GMD5E]
gi|425721976|gb|EKU84876.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
durans FB129-CNAB-4]
gi|430479840|gb|ELA57050.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E0333]
gi|430495754|gb|ELA71890.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1050]
gi|430537815|gb|ELA78130.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1133]
gi|430545066|gb|ELA85064.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1392]
gi|430550630|gb|ELA90413.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1573]
gi|430555235|gb|ELA94779.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1576]
gi|430559621|gb|ELA98969.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1578]
gi|430571946|gb|ELB10818.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1622]
gi|430576196|gb|ELB14865.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1623]
gi|430579151|gb|ELB17687.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1626]
gi|430589831|gb|ELB27931.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1731]
gi|430606266|gb|ELB43624.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E2134]
gi|430610889|gb|ELB48019.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E2297]
gi|430615645|gb|ELB52589.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E2883]
gi|430629037|gb|ELB65459.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1321]
gi|430632734|gb|ELB68935.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1644]
gi|430633560|gb|ELB69715.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E2369]
gi|430639847|gb|ELB75702.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E4389]
gi|445189529|gb|AGE31171.1| Ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium NRRL B-2354]
Length = 452
Score = 192 bits (487), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 133/431 (30%), Positives = 232/431 (53%), Gaps = 35/431 (8%)
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVG 120
R ++ + L R+ GGA+++LL NEM + +L+ +D+ L T+++
Sbjct: 13 RYMALLTLERVNKGGAYSNLLL--------NEM--------IKQSELNQKDVGLFTELIY 56
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLA 179
GTI +R L+ + L K ++ + +L + Y++ LD +P +A+++E V +A
Sbjct: 57 GTISHQRLLEFYVAPLIAKAK---KVDDWVKTLLYLSVYQLEFLDKVPAHAILNEAVEIA 113
Query: 180 KVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTK 239
KV PG G VNG+LR + P L+G R L+ S P+WM +R
Sbjct: 114 KVKGNPGTGKFVNGVLR------NYQRQGAPDLQGIADPIER-LSVKISLPLWMTKRLVD 166
Query: 240 YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFIRV 299
+G EE KL + S R ++R+ ++R + L + ++ E S I
Sbjct: 167 QIGYEETEKLGLSLYQPSHASARVDTRR-LSRDQAITVLQ--EEEITAEKSQVSPYGIVA 223
Query: 300 KTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCL-- 357
K G ++ + L +G+ +QDES+ LV + +P ++D CAAPGGKT ++AS L
Sbjct: 224 KKG--HLASSSLFHDGVMTIQDESSMLVAPSMQIEPEHHVLDACAAPGGKTTHIASFLDP 281
Query: 358 SGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVKCDKVLLDAPC 416
S G V A+D+++ +++++ + A V+S + D R + + D++L+DAPC
Sbjct: 282 SCGGEVVALDVHEHKVKLIEDNAARLGVSSAVYAQKMDAREVSKQFEAEQFDRILVDAPC 341
Query: 417 SGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEER 476
SGLG+L ++ D+R+ ++ +++ L +Q E+L++ + +K G+L YSTC+I EEN++
Sbjct: 342 SGLGLLRRKPDIRYKKQPDELANLPKIQLEILESCAPTLKSSGILTYSTCTILKEENQDV 401
Query: 477 VEAFLLRHPEF 487
V AFL RHP+F
Sbjct: 402 VSAFLERHPDF 412
>gi|227513475|ref|ZP_03943524.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus buchneri
ATCC 11577]
gi|227083348|gb|EEI18660.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus buchneri
ATCC 11577]
Length = 444
Score = 192 bits (487), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 145/429 (33%), Positives = 221/429 (51%), Gaps = 33/429 (7%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDH-LICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD 165
+ D D L T+IV G I+ R L++ L+ L EKT E + ++L Y++ LD
Sbjct: 38 MSDVDKALFTNIVYGVIQHRMTLEYQLVPFLKDPEKT----EDWVKELLYTAMYQLEYLD 93
Query: 166 -MPPYAVVDENVRLAKVALRPGAGNLVNGIL----RKLVLLKDNNSLPLPKLEGNDRAQA 220
+P A+ DE++++AK G V GIL RK V D P+ K+
Sbjct: 94 RVPKRAIFDESIKIAKSMGHDGTRRFVTGILHQMDRKGVREPDKIKDPVKKI-------- 145
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
+ YS P W+V LG+++A ++ N P S+R N K T++ L QL
Sbjct: 146 ---SIKYSVPEWLVSLIEGQLGKQKADQVFKSLNQTPKQSVRFNKAK-TTKSKLTDQLTQ 201
Query: 281 LKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIV 340
Q E SL E I V G V+ + + GL +QDESA L V + QP I+
Sbjct: 202 AGFQT--EDSLVAGEGIIVDKG--QVVHSAFFENGLLTIQDESAMLPVESMSIQPDDLIL 257
Query: 341 DCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 400
D C+APGGKT +A+ L G V A+DI++ +L+ + AK V+ V+ T D R
Sbjct: 258 DACSAPGGKTTQIAANLKN-GRVIALDIHQNKLKNVIRNAKRLGVDGVVETQALDARKVD 316
Query: 401 DN-STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGG 459
+ S D +L+DAPCSG G++ ++ ++R+++ L D+ L +Q ++L+A + VK GG
Sbjct: 317 EKFSDEMFDHILVDAPCSGFGLMRRKPEIRYDKTLADINHLSQIQLQILEAVAPKVKTGG 376
Query: 460 VLVYSTCSIDPEENEERVEAFLLRHPEFSIDP--ADGLVPSDFVTKHGFFFSDPIKHSLD 517
+ YSTC+I +EN+E ++ FL HP+F I+P D + +D ++G P D
Sbjct: 377 TITYSTCTIVQQENQEVIKQFLDAHPDFQIEPTKTDLNLTTD---ENGMINIYPDDFGSD 433
Query: 518 GAFAARLVR 526
G F LVR
Sbjct: 434 GFFVCSLVR 442
>gi|375362218|ref|YP_005130257.1| sun protein [Bacillus amyloliquefaciens subsp. plantarum CAU B946]
gi|421731756|ref|ZP_16170879.1| 16S rRNA methyltransferase B [Bacillus amyloliquefaciens subsp.
plantarum M27]
gi|451347055|ref|YP_007445686.1| 16S rRNA methyltransferase B [Bacillus amyloliquefaciens IT-45]
gi|371568212|emb|CCF05062.1| sun protein [Bacillus amyloliquefaciens subsp. plantarum CAU B946]
gi|407073969|gb|EKE46959.1| 16S rRNA methyltransferase B [Bacillus amyloliquefaciens subsp.
plantarum M27]
gi|449850813|gb|AGF27805.1| 16S rRNA methyltransferase B [Bacillus amyloliquefaciens IT-45]
Length = 447
Score = 192 bits (487), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 121/391 (30%), Positives = 214/391 (54%), Gaps = 18/391 (4%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
+T L D+D L+T++V GT++ + LD+++ + + ++P ++Q+LR+ Y++
Sbjct: 32 IKTNTLSDQDRGLLTELVYGTLQNKIALDYMLKPFI---RKPNKVKPWVIQLLRLSAYQM 88
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
L+ +P A + E V +AK G + VNGILR L + + ++E
Sbjct: 89 EYLEKIPDRAAIHEAVEIAKKRGHKGIASFVNGILRSL---QREGAPSFAEIED----PV 141
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
L+T SHP W+V+ W + G E A K+ + P +LR N K R ++ ++
Sbjct: 142 LRLSTETSHPEWLVKEWVEAYGFEAAEKICRIHLIPPKQTLRVNHIKS-DRETVLNEMEN 200
Query: 281 LKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIV 340
L+ L D +K + N + G ++QDES+ LV +DP+PG++++
Sbjct: 201 AGLEA-EAGDLSPDAIKLLKGSIANT---AFFQNGRVSIQDESSMLVARALDPKPGETVL 256
Query: 341 DCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 400
D CAAPGGK+ ++A + +G + ++D+++ +++++ E A+ + ++I D R
Sbjct: 257 DACAAPGGKSAHIAELMENEGSLTSLDLHRHKVKLIKEGAERLGL-TIIDAQTMDARKAG 315
Query: 401 DN-STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGG 459
+ + D++L+DAPCSG GV+ ++ D+++ + ED L +Q +L + LVK GG
Sbjct: 316 EAFGAERFDRILVDAPCSGFGVIRRKPDMKYTKTPEDSRRLSEIQLGILREIAPLVKKGG 375
Query: 460 VLVYSTCSIDPEENEERVEAFLLRHPEFSID 490
LVYSTC++D ENEE + AF+ HPEF D
Sbjct: 376 TLVYSTCTMDRTENEEVMHAFIQEHPEFEPD 406
>gi|261206663|ref|ZP_05921361.1| fmu [Enterococcus faecium TC 6]
gi|289565024|ref|ZP_06445478.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium D344SRF]
gi|294614916|ref|ZP_06694807.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1636]
gi|425059192|ref|ZP_18462542.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium 504]
gi|430824314|ref|ZP_19442878.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E0120]
gi|430829993|ref|ZP_19448062.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E0269]
gi|430835061|ref|ZP_19453060.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E0679]
gi|430851319|ref|ZP_19469069.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1185]
gi|430867720|ref|ZP_19482618.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1574]
gi|431216453|ref|ZP_19501204.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1620]
gi|431744819|ref|ZP_19533685.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E2071]
gi|260079156|gb|EEW66849.1| fmu [Enterococcus faecium TC 6]
gi|289163231|gb|EFD11077.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium D344SRF]
gi|291592202|gb|EFF23820.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1636]
gi|403036257|gb|EJY47614.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium 504]
gi|430441329|gb|ELA51444.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E0120]
gi|430479311|gb|ELA56567.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E0269]
gi|430484729|gb|ELA61691.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E0679]
gi|430534281|gb|ELA74742.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1185]
gi|430550107|gb|ELA89916.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1574]
gi|430569818|gb|ELB08798.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1620]
gi|430604979|gb|ELB42401.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E2071]
Length = 452
Score = 192 bits (487), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 133/431 (30%), Positives = 232/431 (53%), Gaps = 35/431 (8%)
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVG 120
R ++ + L R+ GGA+++LL NEM + +L+ +D+ L T+++
Sbjct: 13 RYMALLTLERVNKGGAYSNLLL--------NEM--------IKQSELNQKDVGLFTELIY 56
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLA 179
GTI +R L+ + L K ++ + +L + Y++ LD +P +A+++E V +A
Sbjct: 57 GTISHQRLLEFYVAPLIAKAK---KVDDWVKTLLYLSVYQLEFLDKVPAHAILNEAVEIA 113
Query: 180 KVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTK 239
KV PG G VNG+LR + P L+G R L+ S P+WM +R
Sbjct: 114 KVKGNPGTGKFVNGVLR------NYQRQGAPDLQGIADPIER-LSVKISLPLWMTKRLVD 166
Query: 240 YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFIRV 299
+G EE KL + S R ++R+ ++R + L + ++ E S I
Sbjct: 167 QIGYEETEKLGLSLYQPSHASARVDTRR-LSRDQAITVLQ--EEEITAEKSQVSPYGIVA 223
Query: 300 KTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCL-- 357
K G ++ + L +G+ +QDES+ LV + +P ++D CAAPGGKT ++AS L
Sbjct: 224 KKG--HLASSSLFHDGVMTIQDESSMLVAPSMQIEPEHHVLDACAAPGGKTTHIASFLDP 281
Query: 358 SGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVKCDKVLLDAPC 416
S G V A+D+++ +++++ + A V+S + D R + + D++L+DAPC
Sbjct: 282 SCGGEVVALDVHEHKVKLIEDNAARLGVSSAVYAQKMDAREVSKQFEAEQFDRILVDAPC 341
Query: 417 SGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEER 476
SGLG+L ++ D+R+ ++ +++ L +Q E+L++ + +K G+L YSTC+I EEN++
Sbjct: 342 SGLGLLRRKPDIRYKKQPDELANLPKIQLEILESCAPALKSSGILTYSTCTILKEENQDV 401
Query: 477 VEAFLLRHPEF 487
V AFL RHP+F
Sbjct: 402 VSAFLERHPDF 412
>gi|311068095|ref|YP_003973018.1| RNA-binding Sun protein; 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Bacillus atrophaeus
1942]
gi|310868612|gb|ADP32087.1| RNA-binding Sun protein; 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Bacillus atrophaeus
1942]
Length = 447
Score = 192 bits (487), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 123/394 (31%), Positives = 217/394 (55%), Gaps = 24/394 (6%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
++ +L D+D L+T++V GT++ + LD+++ + + ++P ++Q+LR+ Y++
Sbjct: 32 IKSNELSDQDRGLLTELVYGTLQNKTALDYMLKPFINKP---AKVKPWVIQLLRLSLYQM 88
Query: 162 VKLDMPPY-AVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
L+ P+ A + E V +AK G + VNG+LR + +P +
Sbjct: 89 EYLEKIPHRAAIHEAVEIAKKRGHKGIASFVNGVLRSV------QREGVPSFAAINDPVT 142
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
R LAT SHP W+V+ W + G + A K+ + P +LR N K R +L+ L
Sbjct: 143 R-LATETSHPEWLVKEWAEAYGFDAAEKICRIHLVPPKQTLRVNQMK-TDRDELLESLAA 200
Query: 281 LKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIV 340
++ + L D VK ++ + K G ++QDES+ LV + P+ G++I+
Sbjct: 201 EGIEA-EKGDLSPDA---VKLLKGSIAGSRFFKNGDVSIQDESSMLVARALGPEAGETIL 256
Query: 341 DCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR--- 397
D CAAPGGK+ ++A + +G V ++D+++ +++++ E A + ++I+ D R
Sbjct: 257 DACAAPGGKSTHIAERMGNEGSVLSLDLHEHKVKLIKEAANRLGL-TIIKPEAMDARKAS 315
Query: 398 -TFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVK 456
F D+ + D++L+DAPCSG GV+ ++ D+++++ ED L +Q +L + LVK
Sbjct: 316 EAFQDD---EFDRILVDAPCSGFGVIRRKPDMKYSKNPEDSARLAKIQLSILREIAPLVK 372
Query: 457 PGGVLVYSTCSIDPEENEERVEAFLLRHPEFSID 490
GG LVYSTC++D ENEE + AF+ HPEF D
Sbjct: 373 KGGTLVYSTCTMDRTENEEVIHAFIQEHPEFEPD 406
>gi|410460745|ref|ZP_11314418.1| 16S rRNA methyltransferase B [Bacillus azotoformans LMG 9581]
gi|409926675|gb|EKN63831.1| 16S rRNA methyltransferase B [Bacillus azotoformans LMG 9581]
Length = 446
Score = 192 bits (487), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 132/434 (30%), Positives = 238/434 (54%), Gaps = 38/434 (8%)
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVG 120
R V+ L+ I+ A+++LL N+M + + L +D+ L+T+IV
Sbjct: 6 REVALDTLLHIEKNQAYSNLLL--------NQM--------IKKEKLSSKDVGLLTEIVY 49
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLA 179
GT++ + LD+ + +K +E ++ +LR+ Y++V LD +P AV+ E V +A
Sbjct: 50 GTVQRKLALDYYLQPFLKKQK---KLELWVMILLRLSLYQMVYLDRIPERAVIHEAVEIA 106
Query: 180 KVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTK 239
K G +VNG+LR + LP + +D + L+ S P+W++++W +
Sbjct: 107 KKRGHRGISGMVNGVLRSI----QREGLPDFNVIKDDLER---LSIEMSLPLWLLQKWAE 159
Query: 240 YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQ--VPHELSLHLDEFI 297
G + ++ P S R N K A + L+LL+ + V + +L +D I
Sbjct: 160 QYGLDVTKEICKSTLEPPMVSARVNCNK----AAVPEVLSLLEEENVVAEKGNLSIDA-I 214
Query: 298 RVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCL 357
+ G N+ + +EG +QDES+ LV + PQ G ++D CAAPGGKT ++A L
Sbjct: 215 LISNG--NLATTKMFQEGYVTIQDESSMLVARALGPQKGDKVLDSCAAPGGKTTHIAELL 272
Query: 358 SGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVKCDKVLLDAPC 416
G V ++D++ +++++ E K ++ +V T+ +D R ++ ++ + D++L+DAPC
Sbjct: 273 GNDGKVISVDLHPHKVKLIEEQVKRLKLTNV-ETLVSDSRHLQEHFNSEEFDRILVDAPC 331
Query: 417 SGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEER 476
SG GV+ ++ D++++++L+D+ +L +Q +L++ + L+K GG LVYSTC+ID EEN
Sbjct: 332 SGFGVIRRKPDIKYSKKLDDIGQLAAIQLSILNSVAPLLKNGGTLVYSTCTIDQEENAAV 391
Query: 477 VEAFLLRHPEFSID 490
E FL + EF +D
Sbjct: 392 AERFLAENKEFIVD 405
>gi|431761102|ref|ZP_19549689.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E3346]
gi|430622476|gb|ELB59197.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E3346]
Length = 452
Score = 191 bits (486), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 133/431 (30%), Positives = 232/431 (53%), Gaps = 35/431 (8%)
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVG 120
R ++ + L R+ GGA+++LL NEM + +L+ +D+ L T+++
Sbjct: 13 RYMALLTLERVNKGGAYSNLLL--------NEM--------IKQSELNQKDVGLFTELIY 56
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLA 179
GTI +R L+ + L K ++ + +L + Y++ LD +P +A+++E V +A
Sbjct: 57 GTISHQRLLEFYVAPLIAKAK---KVDDWVKTLLYLSVYQLEFLDKVPAHAILNEAVEIA 113
Query: 180 KVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTK 239
KV PG G VNG+LR + P L+G R L+ S P+WM +R
Sbjct: 114 KVKGNPGTGKFVNGVLR------NYQRQGAPDLQGIADPIER-LSVKISLPLWMTKRLVD 166
Query: 240 YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFIRV 299
+G EE KL + S R ++R+ ++R + L + ++ E S I
Sbjct: 167 QIGYEETEKLGLSLYHPSHASARVDTRR-LSRDQAITVLQ--EEEITAEKSQVSPYGIVA 223
Query: 300 KTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCL-- 357
K G ++ + L +G+ +QDES+ LV + +P ++D CAAPGGKT ++AS L
Sbjct: 224 KKG--HLASSSLFHDGVMTIQDESSMLVAPSMQIEPEHHVLDACAAPGGKTTHIASFLDP 281
Query: 358 SGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVKCDKVLLDAPC 416
S G V A+D+++ +++++ + A V+S + D R + + D++L+DAPC
Sbjct: 282 SCGGEVVALDVHEHKVKLIEDNAARLGVSSAVYAQKMDAREVSKQFEAEQFDRILVDAPC 341
Query: 417 SGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEER 476
SGLG+L ++ D+R+ ++ +++ L +Q E+L++ + +K G+L YSTC+I EEN++
Sbjct: 342 SGLGLLRRKPDIRYKKQPDELANLPKIQLEILESCAPALKSSGILTYSTCTILKEENQDV 401
Query: 477 VEAFLLRHPEF 487
V AFL RHP+F
Sbjct: 402 VSAFLERHPDF 412
>gi|423389828|ref|ZP_17367054.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG1X1-3]
gi|423418228|ref|ZP_17395317.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG3X2-1]
gi|401106501|gb|EJQ14462.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG3X2-1]
gi|401641919|gb|EJS59636.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG1X1-3]
Length = 444
Score = 191 bits (486), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 130/387 (33%), Positives = 205/387 (52%), Gaps = 22/387 (5%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+D +D+ L+T+IV GTI+ R LD+ + +E + +LR+ Y+++ LD
Sbjct: 36 IDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLR-----KKVEAWVRVLLRLSLYQMLYLDR 90
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A + E V +AK G +VNG+LR + +P LE R LA
Sbjct: 91 VPERAAIHEAVEIAKRRGHKGISGMVNGVLRSI------QREGVPSLEEIKDPVER-LAI 143
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
SHP W+V+ W G E A K+ N P + R N K + + N
Sbjct: 144 TTSHPAWLVQDWVSEYGLETAGKMCEVNMLPPVPTARVNVDKVTVEEAIGLLANEGIEAK 203
Query: 286 PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAA 345
+LS D+ I+++ G NV K+G ++QDES+ LV ++P G ++D CAA
Sbjct: 204 RGDLS---DDAIQIERG--NVAHTEAFKKGFLSIQDESSMLVARALEPNEGDEVLDSCAA 258
Query: 346 PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETA-KLHQVNSVIRTIHA-DLRTFADNS 403
PGGKT ++A L G G V ++D++ ++R++ + A +L N + + A ++ +N
Sbjct: 259 PGGKTTHIAERLKGTGKVMSLDLHAHKVRLIRQQADRLGLENVETKALDARKVQEHFENE 318
Query: 404 TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463
T DK+L+DAPCSG GV+ ++ D++ + D E L +Q +L+ + L+K GG LVY
Sbjct: 319 TF--DKILVDAPCSGFGVIRRKPDIKLGKDKGDSERLSTIQFAILEKIAPLLKQGGRLVY 376
Query: 464 STCSIDPEENEERVEAFLLRHPEFSID 490
STC+I+ ENE+ +E FL HPEF D
Sbjct: 377 STCTIEKIENEQVIERFLQEHPEFEWD 403
>gi|227510466|ref|ZP_03940515.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus brevis
subsp. gravesensis ATCC 27305]
gi|227190118|gb|EEI70185.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus brevis
subsp. gravesensis ATCC 27305]
Length = 444
Score = 191 bits (486), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 143/426 (33%), Positives = 223/426 (52%), Gaps = 27/426 (6%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDH-LICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD 165
+ D D L T+IV G I+ R L++ L+ L EKT E + ++L Y++ LD
Sbjct: 38 MSDVDKALFTNIVYGVIQHRMTLEYQLVPFLRDPEKT----EDWVKELLYTAMYQLEYLD 93
Query: 166 -MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLP-KLEGNDRAQARAL 223
+P A+ DE++++AK G V GIL ++ D + P K+E + +
Sbjct: 94 RVPKRAIFDESIKIAKSMGHDGTRRFVTGILHQM----DRKGVREPDKIED----PVKKI 145
Query: 224 ATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKL 283
+ YS P W+V LG+++A ++ N P S+R N K T++ L QL
Sbjct: 146 SIKYSVPEWLVSLIEGQLGKQKADQVFKSLNQAPKQSVRFNKAK-TTKSKLTDQLTQAGF 204
Query: 284 QVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCC 343
Q E SL E I V G V+ + + GL +QDESA L V + QP I+D C
Sbjct: 205 QT--EDSLVAGEGIIVDKG--QVVHSAFFENGLLTIQDESAMLPVESMSIQPDDLILDAC 260
Query: 344 AAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN- 402
+APGGKT +A+ L G V A+DI++ +L+ + AK V+ V+ T D R +
Sbjct: 261 SAPGGKTTQIAADLKN-GRVIALDIHQNKLKNVIRNAKRLGVDGVVETQALDARKVDEKF 319
Query: 403 STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLV 462
S D +L+DAPCSG G++ ++ ++R+++ L D+ L +Q ++L+A + VK GG +
Sbjct: 320 SDEMFDHILVDAPCSGFGLMRRKPEIRYDKTLADINHLSQIQLQILEAVAPKVKTGGTIT 379
Query: 463 YSTCSIDPEENEERVEAFLLRHPEFSIDP--ADGLVPSDFVTKHGFFFSDPIKHSLDGAF 520
YSTC+I +EN+E ++ FL HP+F I+P D + +D ++G P DG F
Sbjct: 380 YSTCTIVQQENQEVIKQFLDAHPDFQIEPTKTDLNLTTD---ENGMINIYPDDFGSDGFF 436
Query: 521 AARLVR 526
LVR
Sbjct: 437 VCSLVR 442
>gi|430821474|ref|ZP_19440082.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E0045]
gi|430827179|ref|ZP_19445343.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E0164]
gi|430906578|ref|ZP_19485013.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1575]
gi|431766092|ref|ZP_19554588.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E4215]
gi|430438427|gb|ELA48858.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E0045]
gi|430444359|gb|ELA54214.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E0164]
gi|430554536|gb|ELA94138.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1575]
gi|430627162|gb|ELB63679.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E4215]
Length = 452
Score = 191 bits (486), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 133/431 (30%), Positives = 232/431 (53%), Gaps = 35/431 (8%)
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVG 120
R ++ + L R+ GGA+++LL NEM + +L+ +D+ L T+++
Sbjct: 13 RYMALLTLERVNKGGAYSNLLL--------NEM--------IKQSELNQKDVGLFTELIY 56
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLA 179
GTI +R L+ + L K ++ + +L + Y++ LD +P +A+++E V +A
Sbjct: 57 GTISHQRLLEFYVAPLIAKAK---KVDDWVKTLLYLSVYQLEFLDKVPAHAILNEAVEIA 113
Query: 180 KVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTK 239
KV PG G VNG+LR + P L+G R L+ S P+WM +R
Sbjct: 114 KVKGNPGTGKFVNGVLR------NYQRQGAPDLQGIADPIER-LSVKISLPLWMTKRLVD 166
Query: 240 YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFIRV 299
+G EE KL + S R ++R+ ++R + L + ++ E S I
Sbjct: 167 QIGYEETEKLGLSLYQPSHASARVDTRR-LSRDQAITVLQ--EEEITAEKSQVSPYGIVA 223
Query: 300 KTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCL-- 357
K G ++ + L +G+ +QDES+ LV + +P ++D CAAPGGKT ++AS L
Sbjct: 224 KKG--HLASSSLFHDGVMTIQDESSMLVAPSMQIEPEHHVLDACAAPGGKTTHIASFLDP 281
Query: 358 SGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVKCDKVLLDAPC 416
S G V A+D+++ +++++ + A V+S + D R + + D++L+DAPC
Sbjct: 282 SRGGEVVALDVHEHKVKLIEDNAARLGVSSAVYAQKMDAREVSKQFEAEQFDRILVDAPC 341
Query: 417 SGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEER 476
SGLG+L ++ D+R+ ++ +++ L +Q E+L++ + +K G+L YSTC+I EEN++
Sbjct: 342 SGLGLLRRKPDIRYKKQPDELANLPKIQLEILESCAPALKSSGILTYSTCTILKEENQDV 401
Query: 477 VEAFLLRHPEF 487
V AFL RHP+F
Sbjct: 402 VSAFLERHPDF 412
>gi|431758710|ref|ZP_19547335.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E3083]
gi|430617078|gb|ELB53964.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E3083]
Length = 452
Score = 191 bits (486), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 140/466 (30%), Positives = 240/466 (51%), Gaps = 50/466 (10%)
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVG 120
R ++ + L R+ GGA+++LL NEM + +L+ +D+ L T+++
Sbjct: 13 RYMALLTLERVNKGGAYSNLLL--------NEM--------IKQSELNQKDVGLFTELIY 56
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLA 179
GTI +R L+ + L K ++ + +L + Y++ LD +P +A+++E V +A
Sbjct: 57 GTISHQRLLEFYVASLIAKAK---KVDDWVKTLLYLSVYQLEFLDKVPAHAILNEAVEIA 113
Query: 180 KVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTK 239
KV PG G VNG+LR + P L+G R L+ S P+WM +R
Sbjct: 114 KVKGNPGTGKFVNGVLR------NYQRQGAPDLQGIADPIER-LSVKISLPLWMTKRLVD 166
Query: 240 YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFIRV 299
+G EE KL + S R ++ + ++R + L + ++ E S I
Sbjct: 167 QIGYEETEKLGLSLYQPSHASARVDTHR-LSRDQAITVLQ--EEEISAEKSQVSPYGIVA 223
Query: 300 KTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCL-- 357
K G ++ + L +G+ +QDES+ LV + +P ++D CAAPGGKT ++AS L
Sbjct: 224 KKG--HLASSSLFHDGVMTIQDESSMLVAPSMQIEPEHHVLDACAAPGGKTTHIASFLDP 281
Query: 358 SGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVKCDKVLLDAPC 416
S G V A+D+++ +++++ E A V+S + D R + + D++L+DAPC
Sbjct: 282 SCGGEVIALDVHEHKVKLIEENATRLGVSSAVYAQKMDAREVSKQFEPEQFDRILVDAPC 341
Query: 417 SGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEER 476
SGLG+L ++ D+R+ ++ +++ L +Q E+L++ + +K G+L YSTC+I EEN++
Sbjct: 342 SGLGLLRRKPDIRYKKQPDELANLPKIQLEILESCAPALKSSGILTYSTCTILKEENQDV 401
Query: 477 VEAFLLRHPEFS--------------IDPADGLVPSDFVTKHGFFF 508
V AFL RHP+F ++ L P F T GFF
Sbjct: 402 VSAFLERHPDFERIDVLTNPMLQSSIVEKMLTLYPHQFYTD-GFFI 446
>gi|419823924|ref|ZP_14347457.1| 16S rRNA methyltransferase B [Bacillus atrophaeus C89]
gi|388471961|gb|EIM08751.1| 16S rRNA methyltransferase B [Bacillus atrophaeus C89]
Length = 447
Score = 191 bits (486), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 123/394 (31%), Positives = 217/394 (55%), Gaps = 24/394 (6%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
++ +L D+D L+T++V GT++ + LD+++ + + ++P ++Q+LR+ Y++
Sbjct: 32 IKSNELSDQDRGLLTELVYGTLQNKTALDYMLKPFINKP---AKVKPWVIQLLRLSLYQM 88
Query: 162 VKLDMPPY-AVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
L+ P+ A + E V +AK G + VNG+LR + +P +
Sbjct: 89 EYLEKIPHRAAIHEAVEIAKKRGHKGIASFVNGVLRSV------QREGVPSFAAINDPVP 142
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
R LAT SHP W+V+ W + G + A K+ + P +LR N K R +L+ L
Sbjct: 143 R-LATETSHPEWLVKEWAEAYGFDAAEKICRIHLVPPKQTLRVNQMK-TDRDELLESLAA 200
Query: 281 LKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIV 340
++ + L D VK ++ + K G ++QDES+ LV + P+ G++I+
Sbjct: 201 EGIEA-EKGDLSPDA---VKLLKGSIAGSRFFKNGDVSIQDESSMLVARALGPEAGETIL 256
Query: 341 DCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR--- 397
D CAAPGGK+ ++A + +G V ++D+++ +++++ E A + ++I+ D R
Sbjct: 257 DACAAPGGKSTHIAERMGNEGSVLSLDLHEHKVKLIKEAANRLGL-TIIKPEAMDARKAS 315
Query: 398 -TFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVK 456
F D+ + D++L+DAPCSG GV+ ++ D+++++ ED L +Q +L + LVK
Sbjct: 316 EAFQDD---EFDRILVDAPCSGFGVIRRKPDMKYSKNPEDSARLAKIQLSILREIAPLVK 372
Query: 457 PGGVLVYSTCSIDPEENEERVEAFLLRHPEFSID 490
GG LVYSTC++D ENEE + AF+ HPEF D
Sbjct: 373 KGGTLVYSTCTMDRTENEEVIHAFIQEHPEFEPD 406
>gi|347750545|ref|YP_004858110.1| sun protein [Bacillus coagulans 36D1]
gi|347583063|gb|AEO99329.1| sun protein [Bacillus coagulans 36D1]
Length = 447
Score = 191 bits (486), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 136/418 (32%), Positives = 221/418 (52%), Gaps = 41/418 (9%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPY 169
D L+T+I GT++ ++ LD+ + +E + +LR+ Y++V LD +P
Sbjct: 43 DRALLTEITYGTLQRKQTLDYFLAPFLR-----KKIENWVRILLRLSLYQMVYLDKIPDR 97
Query: 170 AVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSH 229
A++ E V +AK G +VNG+LR + + L ++E D + ++AT SH
Sbjct: 98 AIIFEAVEIAKKRGHRGISGIVNGVLRAI---QRGGLRSLKEIE--DPLERLSVAT--SH 150
Query: 230 PVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRAN-SRKGVTRADLVMQLNLLKLQVPHE 288
P W+V RW + G + ++ N P + R N +R V +++ +L V E
Sbjct: 151 PHWLVARWAEAYGYKTTKEMCEANLIPPLQTARVNLNRASVD--EVIEKLEREGFTV--E 206
Query: 289 LSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGG 348
S + E +R + G N+ ++ KEGL +QDES+ V + Q GQ I+D CAAPGG
Sbjct: 207 RSPVIPEAVRSRKG--NLARSACFKEGLFTIQDESSMAVAYALCIQEGQRILDACAAPGG 264
Query: 349 KTLYMASCLSGQGLVYAIDINKGRLRILNETAK---LHQVNSVIRTIHADLRTFADNSTV 405
KT ++A L G G V A+D++ +++++ E A+ QV ++ F N+
Sbjct: 265 KTTHIAEKLEGTGEVVALDLHPHKVKLVQENAERLGTGQVEAIAMDSRDAGARFEKNT-- 322
Query: 406 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465
D++L+DAPC+G GVL ++ D+++ + ++D+ LK +Q +L S L+KP G+LV+ST
Sbjct: 323 -FDRILVDAPCTGFGVLRRKPDIKYAKTVDDIHALKQVQLSILSGVSELLKPDGILVFST 381
Query: 466 CSIDPEENEERVEAFLLRHPEFSIDP----------ADG----LVPSDFVTKHGFFFS 509
C++D EENE +E FL HPEF P DG + P DF GFF +
Sbjct: 382 CTVDREENEGTIETFLQEHPEFEPYPLHVPEAMESCVDGYRMQIFPQDF-GGDGFFIA 438
>gi|452855521|ref|YP_007497204.1| RNA-binding Sun protein; 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Bacillus
amyloliquefaciens subsp. plantarum UCMB5036]
gi|452079781|emb|CCP21538.1| RNA-binding Sun protein; 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Bacillus
amyloliquefaciens subsp. plantarum UCMB5036]
Length = 446
Score = 191 bits (486), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 122/391 (31%), Positives = 214/391 (54%), Gaps = 18/391 (4%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
+T L D+D L+T++V GT++ + LD+++ + + ++P ++Q+LR+ Y++
Sbjct: 31 IKTNTLSDQDRGLLTELVYGTLQNKIALDYMLKPFI---RKPNKVKPWVIQLLRLSAYQM 87
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
L+ +P A + E V +AK G + VNGILR L + + ++E
Sbjct: 88 EYLEKIPDRAAIHEAVEIAKKRGHKGIASFVNGILRSL---QREGAPSFAEIED----PV 140
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
L+T SHP W+V+ W + G E A K+ + P +LR N K R ++ ++
Sbjct: 141 LRLSTETSHPEWLVKEWVEAYGFEAAEKICRIHLIPPKQTLRVNHIKS-DRDTVLNEMEN 199
Query: 281 LKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIV 340
L+ L D +K + N + G ++QDES+ LV +DP+PG++++
Sbjct: 200 AGLEA-EAGDLSPDAIKLLKGSIANT---AFFQNGRVSIQDESSMLVARALDPKPGETVL 255
Query: 341 DCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 400
D CAAPGGK+ ++A + +G + ++D+++ +++++ E A+ + ++I D R
Sbjct: 256 DACAAPGGKSAHIAELMENEGSLTSLDLHRHKVKLIKEGAERLGL-TIIDAQTMDARKAG 314
Query: 401 DN-STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGG 459
+ + D+VL+DAPCSG GV+ ++ D+++ + ED L +Q +L + LVK GG
Sbjct: 315 EAFGAERFDRVLVDAPCSGFGVIRRKPDMKYTKTPEDSRRLAEIQLGILREIAPLVKKGG 374
Query: 460 VLVYSTCSIDPEENEERVEAFLLRHPEFSID 490
LVYSTC++D ENEE + AF+ HPEF D
Sbjct: 375 TLVYSTCTMDRTENEEVMHAFIQEHPEFEPD 405
>gi|182420429|ref|ZP_02951648.1| ribosomal RNA small subunit methyltransferase B [Clostridium
butyricum 5521]
gi|237668664|ref|ZP_04528648.1| ribosomal RNA small subunit methyltransferase B [Clostridium
butyricum E4 str. BoNT E BL5262]
gi|182375715|gb|EDT73315.1| ribosomal RNA small subunit methyltransferase B [Clostridium
butyricum 5521]
gi|237657012|gb|EEP54568.1| ribosomal RNA small subunit methyltransferase B [Clostridium
butyricum E4 str. BoNT E BL5262]
Length = 438
Score = 191 bits (485), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 142/425 (33%), Positives = 225/425 (52%), Gaps = 28/425 (6%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD 165
+L+D+D L+T+IV G +R +R LD +I D K M+ +L ILR+ Y++ LD
Sbjct: 33 ELNDKDKALLTEIVYGVLRRKRTLDVIIANFVKDIKL---MDKNILNILRVAIYQMNFLD 89
Query: 166 -MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P YA +E V AK + LVNGILR D+ ++P K++ A
Sbjct: 90 KIPTYAACNEAVEEAK-EISENDSKLVNGILRSFTKNPDDINVPGNKID--------EYA 140
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQ 284
+S WM+R K G+ A K+M N+ P S+R N + D V + L +++
Sbjct: 141 YKFSFEPWMIRLLIKQYGENVAKKIMSGLNTIPKVSIRVNELN--SDYDEVYE-KLEEME 197
Query: 285 VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 344
+ E I +K G +++ L KEG VQDESA LV ++D + G ++VD C+
Sbjct: 198 YEISEGVICPEAINIKGG-KSIENNPLFKEGKITVQDESAMLVAPLLDLKEGMTVVDLCS 256
Query: 345 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNST 404
APGGKT ++A L G V A D+++ +L ++ E + + +V T D
Sbjct: 257 APGGKTTHIAEILGNTGKVLAFDLHESKLGLIKENCERLGITNVT-TFAQDATKLNAELV 315
Query: 405 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464
D+VLLD PCSGLG++ K+ +++WN++ D+ E+ +Q E+++ A +K GGV++YS
Sbjct: 316 ASTDRVLLDVPCSGLGIIRKKPEIKWNKKRNDLREIIPVQREIMNNAWQYLKQGGVMIYS 375
Query: 465 TCSIDPEENEERVEAFLLRHPEFSID-----PADGLVPSDFVTKHGFFFSDPIKHSLDGA 519
TC+++ EENEE +E F+ H + + D LV S + G P ++DG
Sbjct: 376 TCTLNKEENEENIEWFVNNHEDCEVKRIFVGKQDNLVYS----REGLLTVMP-NENMDGF 430
Query: 520 FAARL 524
F A+L
Sbjct: 431 FIAKL 435
>gi|373458226|ref|ZP_09549993.1| sun protein [Caldithrix abyssi DSM 13497]
gi|371719890|gb|EHO41661.1| sun protein [Caldithrix abyssi DSM 13497]
Length = 450
Score = 191 bits (485), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 135/429 (31%), Positives = 217/429 (50%), Gaps = 38/429 (8%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQ---ILRIGFYEIV 162
+L R+ R ++ G +R R YLD + L + LL++ +LR+ YE++
Sbjct: 38 ELSGRERRFFKNLTSGVVRHRLYLDWIGSQLYK-----GRYKKLLIKFKVLLRLALYELI 92
Query: 163 KLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQAR 221
L +P +A ++E V L K L L+NG+LR + K+ P K+E +
Sbjct: 93 FLTAIPEHATLNEYVGLTKKKLNNFQAKLLNGLLRNYLRQKETLD-PAKKIED----PLK 147
Query: 222 ALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRA--DLVMQLN 279
L+ YS P W+++RW + G+ E L N P F + N++K + +L+ +
Sbjct: 148 RLSVQYSFPEWLIKRWIGFWGEAETEALCKKLNEPPDFDVHINTQKISPKKFKNLLKEKK 207
Query: 280 LLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSI 339
+ ++ P + ++ +RVK +Q ++ ++G C +QDESA LVV + I
Sbjct: 208 VPFVEAPFDTTI-----VRVK-DVQPFLRERWFEKGYCVIQDESAALVVEQMALTEKSKI 261
Query: 340 VDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRL-RILNETAKLHQVNSVIRTIHADLRT 398
+D CAAPGGK + QG+V A DI+K RL R+ KL + L
Sbjct: 262 LDMCAAPGGKYAQLLKKRPSQGMVVAADIDKERLKRVKQNVQKL--------GLEGGLFV 313
Query: 399 FAD--NSTVK--CDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLL 454
AD N K D +L+DAPC+GLGV+ K D++W R+ E++ E +Q++LL+AA +
Sbjct: 314 VADGKNPPFKKVFDHILIDAPCTGLGVIRKHPDIKWRRKFEEIIEFSKIQEDLLEAADRI 373
Query: 455 VKPGGVLVYSTCSIDPEENEERVEAFLLRHPE-FSIDPADGLVPSDFVTKHGFFFSDPIK 513
+ G L+YSTC+ID ENE + FL +H E +++ PS + F P +
Sbjct: 374 LTENGRLIYSTCTIDYFENENVAKDFLQKHAEKYAVQKPKVAHPS--MLSEDFVRIQPHR 431
Query: 514 HSLDGAFAA 522
H +DG+F A
Sbjct: 432 HEMDGSFCA 440
>gi|430837175|ref|ZP_19455150.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E0680]
gi|430839961|ref|ZP_19457897.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E0688]
gi|430859193|ref|ZP_19476808.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1552]
gi|431387248|ref|ZP_19511611.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1627]
gi|431512488|ref|ZP_19515915.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1634]
gi|431668781|ref|ZP_19524143.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1904]
gi|430487605|gb|ELA64325.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E0680]
gi|430490201|gb|ELA66743.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E0688]
gi|430544035|gb|ELA84080.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1552]
gi|430580805|gb|ELB19271.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1627]
gi|430586407|gb|ELB24664.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1634]
gi|430599947|gb|ELB37629.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1904]
Length = 452
Score = 191 bits (485), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 133/431 (30%), Positives = 232/431 (53%), Gaps = 35/431 (8%)
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVG 120
R ++ + L R+ GGA+++LL NEM + +L+ +D+ L T+++
Sbjct: 13 RYMALLTLERVNKGGAYSNLLL--------NEM--------IKQSELNQKDVGLFTELIY 56
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLA 179
GTI +R L+ + L K ++ + +L + Y++ LD +P +A+++E V +A
Sbjct: 57 GTISHQRLLEFYVAPLIAKAK---KVDDWVKTLLYLSVYQLEFLDKVPAHAILNEAVEIA 113
Query: 180 KVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTK 239
KV PG G VNG+LR + P L+G R L+ S P+WM +R
Sbjct: 114 KVKGNPGTGKFVNGVLR------NYQRQGAPDLQGIADPIER-LSFKISLPLWMTKRLVD 166
Query: 240 YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFIRV 299
+G EE KL + S R ++R+ ++R + L + ++ E S I
Sbjct: 167 QIGYEETEKLGLSLYQPSHASARVDTRR-LSRDQAITVLQ--EEEITAEKSQVSPYGIVA 223
Query: 300 KTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCL-- 357
K G ++ + L +G+ +QDES+ LV + +P ++D CAAPGGKT ++AS L
Sbjct: 224 KKG--HLASSSLFHDGVMTIQDESSMLVAPSMQIEPEHHVLDACAAPGGKTTHIASFLDP 281
Query: 358 SGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVKCDKVLLDAPC 416
S G V A+D+++ +++++ + A V+S + D R + + D++L+DAPC
Sbjct: 282 SCGGEVVALDVHEHKVKLIEDNAARLGVSSAVYAQKMDAREVSKQFEAEQFDRILVDAPC 341
Query: 417 SGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEER 476
SGLG+L ++ D+R+ ++ +++ L +Q E+L++ + +K G+L YSTC+I EEN++
Sbjct: 342 SGLGLLRRKPDIRYKKQPDELANLPKIQLEILESCAPALKSSGILTYSTCTILKEENQDV 401
Query: 477 VEAFLLRHPEF 487
V AFL RHP+F
Sbjct: 402 VSAFLERHPDF 412
>gi|94266702|ref|ZP_01290375.1| Fmu, rRNA SAM-dependent methyltransferase [delta proteobacterium
MLMS-1]
gi|93452643|gb|EAT03206.1| Fmu, rRNA SAM-dependent methyltransferase [delta proteobacterium
MLMS-1]
Length = 484
Score = 191 bits (485), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 149/475 (31%), Positives = 223/475 (46%), Gaps = 62/475 (13%)
Query: 96 VERTLGFRTKD---LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQ 152
VE+ L R ++ D RD RL+ +V G +RWR LD ++ + + M+PL L
Sbjct: 25 VEQLLEHRLREHPLADGRDRRLLEALVYGVLRWRGLLDQVVA--GYARHPLAKMKPLTLA 82
Query: 153 ILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRP-GAGNLVNGILRKLV----------- 199
LR+G +++ L+ +P A ++E ++ + A +P VN +LRK
Sbjct: 83 ALRLGILQLLILERLPASAAINETIKALRAARQPRWLTGFVNAVLRKAAADIERLGRQQY 142
Query: 200 ---LLKD--------NNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIK 248
L+ + +S PLP A+A SHP W+ +RW + G E +
Sbjct: 143 LAGLVAEVTASTGQYASSAPLPM----------AVAAWLSHPPWLRQRWEQRYGLELCRE 192
Query: 249 LMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQ 308
L NN P LR N + +T ++L+ QL K + + + + G V
Sbjct: 193 LCHINNCLPPLVLRVNLHR-LTASELLAQLQ--KAGIAATAGDYAPAAVVLPPGSGRVED 249
Query: 309 AGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDI 368
+G AVQDE+A LV ++ +D CA GGKT ++A L + + A++
Sbjct: 250 LPGYGQGWFAVQDEAAQLVTMLLAGAGPGHYLDACAGLGGKTAHLAELLPPEATITALEP 309
Query: 369 NKGRLRILNETAKLHQVNSVIRTIHADLRT-----------------FADNSTVKCDKVL 411
R +L TA LH++ R I +L F+ S +L
Sbjct: 310 QSRRALLL--TANLHRLGVTARLIQGELAAHLPAADKKDKNGDTIPIFSPFSPFLYQGIL 367
Query: 412 LDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPE 471
+DAPCSGLGV+ + D+RWNRR +++ + Q ELL A+ L++PGGVLVY CS +PE
Sbjct: 368 VDAPCSGLGVIRRHPDIRWNRRAAELKNYQRRQLELLSTAAELLQPGGVLVYVVCSFEPE 427
Query: 472 ENEERVEAFLLRHPEFSID-PADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARLV 525
ENEE ++ L R PE + PA L + G FF LDG FAARLV
Sbjct: 428 ENEEVIQLLLKRRPELRLSAPAPYLPVAARQLVRGDFFRSLPSDGLDGFFAARLV 482
>gi|395242503|ref|ZP_10419500.1| Ribosomal RNA small subunit methyltransferase B [Lactobacillus
pasteurii CRBIP 24.76]
gi|394480235|emb|CCI85740.1| Ribosomal RNA small subunit methyltransferase B [Lactobacillus
pasteurii CRBIP 24.76]
Length = 440
Score = 191 bits (485), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 139/425 (32%), Positives = 222/425 (52%), Gaps = 32/425 (7%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L D L T+IV GTI+ R +L++ + L + T + PLLL + Y+I+ LD
Sbjct: 37 LSQADQNLATNIVYGTIQHRIFLEYQLKDLIQTKLTEKHLMPLLL----MSAYQIIFLDK 92
Query: 166 MPPYAVVDENVRLAKV--ALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARAL 223
+P AV+DE +LAK + R +VNG+LR L + LP +D L
Sbjct: 93 VPARAVLDEANKLAKSYGSKRSNGYRIVNGVLRSLT----RRGVVLP----DDENSIEYL 144
Query: 224 ATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKL 283
+ S P W+V + K G+ A + N S+R +S + + QL L
Sbjct: 145 SVKESMPQWLVEYFVKEWGRPRAQAMFASFNETAKNSIRVSSL--ADQEQVFTQLTQLGY 202
Query: 284 QVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCC 343
+ P + L I G VI+ L K G +QDE+AGLVV D + + ++D C
Sbjct: 203 E-PVKSDLSPSNLILKHGG---VIKEDLFKNGDITIQDEAAGLVVQAFDFKGDEQVLDAC 258
Query: 344 AAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT----F 399
+APGGKT+ +A L+ G V A+DI+K +L ++ + A+ +V ++ D R F
Sbjct: 259 SAPGGKTVQIAEHLT-TGQVTALDIHKNKLNLVKKNAQRMKVADKLKVAAIDARASDSYF 317
Query: 400 ADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGG 459
+D + DK+L+DAPCSGLG++ ++ ++R+ ++ ED+ L+ +Q +LD S L+ GG
Sbjct: 318 SDQ---RFDKILVDAPCSGLGLMRRKPEIRYTKKPEDLVNLQKIQLAILDHVSQLLNKGG 374
Query: 460 VLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGA 519
LVYSTC+I +E+E+ +E FL+ HP +S++ + + + G P + DG
Sbjct: 375 ELVYSTCTISRQEDEDVIEKFLMAHPAYSLEKFE---VAKLKSDSGMLKILPDEFGSDGF 431
Query: 520 FAARL 524
F A+L
Sbjct: 432 FIAKL 436
>gi|392412440|ref|YP_006449047.1| ribosomal RNA small subunit methyltransferase RsmB [Desulfomonile
tiedjei DSM 6799]
gi|390625576|gb|AFM26783.1| ribosomal RNA small subunit methyltransferase RsmB [Desulfomonile
tiedjei DSM 6799]
Length = 448
Score = 191 bits (485), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 147/439 (33%), Positives = 213/439 (48%), Gaps = 44/439 (10%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLI--CLLCHDEKTFSSMEPLLLQILRIGFYEIV 162
+ L +D L T++V G +RWR LD +I C++ + + M+P + +ILR Y+I
Sbjct: 36 QSLSAKDRNLATELVYGVVRWRDRLDSIIRRCVI----RPGTRMDPDVREILRTALYQIF 91
Query: 163 KLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQAR 221
L +P +A VD+ V A + AG VN +LR+ + ++ P K R
Sbjct: 92 FLQRIPEHAAVDQAVMYASQRSKKHAG-FVNAVLRRALRDRETADPPPEK-------DPR 143
Query: 222 ALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLL 281
LA YSHP W+VRRW G + ++ NNS S LR N+ K D V Q+
Sbjct: 144 RLAVYYSHPEWLVRRWLHRFGYRKTKHILQHNNSKASLELRLNTLKATP--DTVSQIT-- 199
Query: 282 KLQVPHELSLH----LDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQ 337
E L +RV V EG VQ ++ ++ ++ PQP
Sbjct: 200 -----EESELQAIPGFPNALRVMRSSGKVETIKGFLEGSLVVQALASQMIAPLLKPQPDM 254
Query: 338 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAK------LHQVNSVIRT 391
I+D CAAPGGKT ++A+ + + A+DI++ RL NETA +H V V+
Sbjct: 255 RILDACAAPGGKTSHLAALVQDNARIVALDISQQRL---NETAANLQRLGVHSVEFVVGD 311
Query: 392 IHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAA 451
AD + + T D++L+DAPCS LGVL + ++ E + + +Q +L
Sbjct: 312 A-ADPQMVKELGTF--DRILVDAPCSNLGVLRHNPEAKYRVTPEALMQFARIQSRILSNM 368
Query: 452 SLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDP-ADGLVPSD-FVTKHGFF-- 507
+ L+ PGG+LVYS CS EE V+AFL P FS+ P VP V GFF
Sbjct: 369 AGLLNPGGMLVYSVCSPTEEETVGVVDAFLTASPGFSLLPFIREEVPMPVLVDARGFFAT 428
Query: 508 FSDPIKHSLDGAFAARLVR 526
F P + LDG FAAR+ R
Sbjct: 429 FPPPPEMPLDGFFAARVAR 447
>gi|238854793|ref|ZP_04645123.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
jensenii 269-3]
gi|260664024|ref|ZP_05864877.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
jensenii SJ-7A-US]
gi|238832583|gb|EEQ24890.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
jensenii 269-3]
gi|260561910|gb|EEX27879.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
jensenii SJ-7A-US]
Length = 437
Score = 191 bits (485), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 133/390 (34%), Positives = 215/390 (55%), Gaps = 24/390 (6%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD 165
+L +D VT +V GTI+++ +L++ + L + ++PLLL + Y+++ L+
Sbjct: 35 NLSQKDQAFVTQLVYGTIQYQLFLEYQLKDLLRTKLKEDYLKPLLL----MSVYQLIFLN 90
Query: 166 -MPPYAVVDENVRLAK-VALRPGAG-NLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARA 222
+P AV+DE +LAK + +G LVNGILR L+ LP PK
Sbjct: 91 RVPNRAVLDEANKLAKDFGKKNSSGFRLVNGILRSF--LRRGQVLPSPK------DPVHF 142
Query: 223 LATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLK 282
L+ S P W+V+ + K G + KL++ N S+R KG+ + +V L
Sbjct: 143 LSIKESMPEWLVQYFVKNWGLKRTEKLLISLNERAENSIRV--AKGLDHSKIVNSLQKQG 200
Query: 283 LQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 342
V +E +L + FI +++ K G +QDE+A LVV D + ++D
Sbjct: 201 FSV-NESTLADNCFIVD----HSIVNTNEFKSGQITIQDEAASLVVDCFDLRENDHVLDT 255
Query: 343 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN 402
CAAPGGKT +A LS G V ++DI+K +L ++ + A+ V+ + T+ D R A++
Sbjct: 256 CAAPGGKTTQLAENLS-HGKVTSLDIHKKKLNLIKKYAQRMHVDDRVETLALDARKAAEH 314
Query: 403 -STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVL 461
S K +K+L+DAPCSGLG+L ++ ++R+++ ++D+ L +Q +LD + L+K G L
Sbjct: 315 FSDTKFNKILVDAPCSGLGLLRRKPEIRYDKTIKDVHNLARIQLAILDNVAQLLKKNGEL 374
Query: 462 VYSTCSIDPEENEERVEAFLLRHPEFSIDP 491
VYSTCSI EENE+ + FL +HPEF + P
Sbjct: 375 VYSTCSITIEENEQVIAEFLKKHPEFELMP 404
>gi|227530540|ref|ZP_03960589.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus vaginalis
ATCC 49540]
gi|227349546|gb|EEJ39837.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus vaginalis
ATCC 49540]
Length = 449
Score = 191 bits (485), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 135/434 (31%), Positives = 237/434 (54%), Gaps = 41/434 (9%)
Query: 96 VERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILR 155
V+ TL R +L D RLVT IV GT++ + L++ + L ++ ++P + +L
Sbjct: 31 VDETL--RRHELKPADQRLVTTIVYGTLQHQLTLEYWLKSLTPGKQ----LDPWVETLLL 84
Query: 156 IGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVL--LKDNNSLPLPKL 212
FY+ LD +P +AV DE +++AK PG V G+L + + D +++
Sbjct: 85 TAFYQYNYLDRVPNWAVTDETIKIAKRRGNPGIRKFVTGVLHSALRKGVPDFSTI----- 139
Query: 213 EGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRA 272
+ A+ L+ S P W+V ++ + G + K++ N S+R N++K +
Sbjct: 140 ----KPIAKRLSIEASVPQWLVEKFIEENGVQTTKKILQAINEPAHVSIRVNTKK--SSL 193
Query: 273 DLVMQLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVD 332
+ V Q L + E + ++ + V +G N++ + LLK+G+ +QDESA L V +D
Sbjct: 194 ETVKQQLLDEGIETAESQVAVNALV-VTSG--NIVNSPLLKDGVITIQDESAMLAVESMD 250
Query: 333 PQPGQSIVDCCAAPGGKTLYMASCLSGQ--GLVYAIDINKGRLRILNETAKLHQVNSVIR 390
P ++D CAAPGGKT+ +A LS G V A+DI++ ++R++ + A+ V V++
Sbjct: 251 LHPQFKVLDACAAPGGKTVQIAEQLSSDQGGKVVALDIHQHKVRLIEKNAQRMGVEGVVK 310
Query: 391 TIHADLRTFADN-STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLD 449
I D R D + + D++L+DAPCSG+G+L ++ ++R+ + D ++L +Q +L+
Sbjct: 311 PIALDARKVNDKFADEEFDRILVDAPCSGMGLLRRKPEIRYTKTAHDSQQLHQIQLAILN 370
Query: 450 AASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSI----------DPADG----L 495
A + +K GG++++STC+I EENE V+ FL HP+F++ D D +
Sbjct: 371 AVAPKLKKGGIIIFSTCTILTEENEHTVQEFLQAHPDFTLERTVTKRALKDDRDSATLTI 430
Query: 496 VPSDFVTKHGFFFS 509
+PSD+ + GFF S
Sbjct: 431 LPSDYGSD-GFFIS 443
>gi|294618612|ref|ZP_06698151.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1679]
gi|291595131|gb|EFF26469.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1679]
Length = 445
Score = 191 bits (484), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 133/431 (30%), Positives = 232/431 (53%), Gaps = 35/431 (8%)
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVG 120
R ++ + L R+ GGA+++LL NEM + +L+ +D+ L T+++
Sbjct: 6 RYMALLTLERVNKGGAYSNLLL--------NEM--------IKQSELNQKDVGLFTELIY 49
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLA 179
GTI +R L+ + L K ++ + +L + Y++ LD +P +A+++E V +A
Sbjct: 50 GTISHQRLLEFYVAPLIAKAK---KVDDWVKTLLYLSVYQLEFLDKVPAHAILNEAVEIA 106
Query: 180 KVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTK 239
KV PG G VNG+LR + P L+G R L+ S P+WM +R
Sbjct: 107 KVKGNPGTGKFVNGVLR------NYQRQGAPDLQGIADPIER-LSFKISLPLWMTKRLVD 159
Query: 240 YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFIRV 299
+G EE KL + S R ++R+ ++R + L + ++ E S I
Sbjct: 160 QIGYEETEKLGLSLYQPSHASARVDTRR-LSRDQAITVLQ--EEEITAEKSQVSPYGIVA 216
Query: 300 KTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCL-- 357
K G ++ + L +G+ +QDES+ LV + +P ++D CAAPGGKT ++AS L
Sbjct: 217 KKG--HLASSSLFHDGVMTIQDESSMLVAPSMQIEPEHHVLDACAAPGGKTTHIASFLDP 274
Query: 358 SGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVKCDKVLLDAPC 416
S G V A+D+++ +++++ + A V+S + D R + + D++L+DAPC
Sbjct: 275 SCGGEVVALDVHEHKVKLIEDNAARLGVSSAVYAQKMDAREVSKQFEAEQFDRILVDAPC 334
Query: 417 SGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEER 476
SGLG+L ++ D+R+ ++ +++ L +Q E+L++ + +K G+L YSTC+I EEN++
Sbjct: 335 SGLGLLRRKPDIRYKKQPDELANLPKIQLEILESCAPALKSSGILTYSTCTILKEENQDV 394
Query: 477 VEAFLLRHPEF 487
V AFL RHP+F
Sbjct: 395 VSAFLERHPDF 405
>gi|384265156|ref|YP_005420863.1| sun protein [Bacillus amyloliquefaciens subsp. plantarum YAU
B9601-Y2]
gi|387898153|ref|YP_006328449.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
amyloliquefaciens Y2]
gi|380498509|emb|CCG49547.1| sun protein [Bacillus amyloliquefaciens subsp. plantarum YAU
B9601-Y2]
gi|387172263|gb|AFJ61724.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
amyloliquefaciens Y2]
Length = 447
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 121/391 (30%), Positives = 213/391 (54%), Gaps = 18/391 (4%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
+T L D+D L+T++V GT++ + LD ++ + + ++P ++Q+LR+ Y++
Sbjct: 32 IKTNTLSDQDRGLLTELVYGTLQNKIALDFMLKPFI---RKPNKVKPWVIQLLRLSAYQM 88
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
L+ +P A + E V +AK G + VNGILR L + + ++E
Sbjct: 89 EYLEKIPDRAAIHEAVEIAKKRGHKGIASFVNGILRSL---QREGAPSFAEIED----PV 141
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
L+T SHP W+V+ W + G E A K+ + P +LR N K R ++ ++
Sbjct: 142 LRLSTETSHPEWLVKEWVEAYGFEAAEKICRIHLIPPKQTLRVNHIKS-DRETVLNEMEN 200
Query: 281 LKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIV 340
L+ L D +K + N + G ++QDES+ LV +DP+PG++++
Sbjct: 201 AGLEA-EAGDLSPDAIKLLKGSIANT---AFFQNGRVSIQDESSMLVARALDPKPGETVL 256
Query: 341 DCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 400
D CAAPGGK+ ++A + +G + ++D+++ +++++ E A+ + ++I D R
Sbjct: 257 DACAAPGGKSAHIAELMENEGSLTSLDLHRHKVKLIKEGAERLGL-TIIDAQTMDARKAG 315
Query: 401 DN-STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGG 459
+ + D++L+DAPCSG GV+ ++ D+++ + ED L +Q +L + LVK GG
Sbjct: 316 EAFGAERFDRILVDAPCSGFGVIRRKPDMKYTKTPEDSRRLSEIQLGILREIAPLVKKGG 375
Query: 460 VLVYSTCSIDPEENEERVEAFLLRHPEFSID 490
LVYSTC++D ENEE + AF+ HPEF D
Sbjct: 376 TLVYSTCTMDRTENEEVMHAFIQEHPEFEPD 406
>gi|169827064|ref|YP_001697222.1| ribosomal RNA small subunit methyltransferase B [Lysinibacillus
sphaericus C3-41]
gi|168991552|gb|ACA39092.1| Ribosomal RNA small subunit methyltransferase B [Lysinibacillus
sphaericus C3-41]
Length = 453
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 134/420 (31%), Positives = 219/420 (52%), Gaps = 23/420 (5%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
++ +D L+T++ GT++ + LD+ + S++ + +LRI Y++ L
Sbjct: 44 IEAKDRALLTELTYGTLQHKMTLDYYLEPFIR-----GSIDHWVRWLLRISLYQMQYLTR 98
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P +A V+E V +AK G + VNGILR ++ +P + + R LA
Sbjct: 99 IPAHAAVNEAVEIAKRRGHRGIASTVNGILRSVL------RQGVPSINDIENPIER-LAI 151
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
SHP+W+V+R+ G E A ++ NN P ++R N+ K VT + +L L
Sbjct: 152 ETSHPIWLVQRFVNNYGLEVATGMLHENNVPPIQTVRVNTTK-VTVEQAMAELEEEGLTA 210
Query: 286 PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAA 345
S + E + V G + KEG +QDES+ + V+ P PG ++D CAA
Sbjct: 211 KQ--SDVIPECLHVTNG--QPARTNAFKEGHITIQDESSMIPANVLKPSPGMRVLDMCAA 266
Query: 346 PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTV 405
PGGKT ++A + +G + A D++ +L +++ + ++ +I T D R +
Sbjct: 267 PGGKTTHLAEIMKNEGSILATDLHPHKLDLIDHNTERLGLD-IIETAPIDGRKAPEFLQA 325
Query: 406 KC-DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464
+ D +L+DAPCSGLGV+ ++ D+++ +R ED+E L+ +Q LLDAA+ ++K G LVYS
Sbjct: 326 ESYDAILVDAPCSGLGVMRRKPDIKYTKREEDLENLQTIQLALLDAATKVLKIKGKLVYS 385
Query: 465 TCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTK--HGFFFSDPIKHSLDGAFAA 522
TC++D +ENE V AFL HPE + L P+ K +G P DG F A
Sbjct: 386 TCTVDKQENEGTVNAFLAAHPEMEAIQLESL-PTKLAEKQANGMLQVFPQDFGSDGFFVA 444
>gi|347534353|ref|YP_004841023.1| hypothetical protein LSA_06680 [Lactobacillus sanfranciscensis TMW
1.1304]
gi|345504409|gb|AEN99091.1| hypothetical protein LSA_06680 [Lactobacillus sanfranciscensis TMW
1.1304]
Length = 448
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 123/384 (32%), Positives = 212/384 (55%), Gaps = 19/384 (4%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+ ++D RL T+IV G I+ R ++ + L K ++ + ++L Y+++ LD
Sbjct: 42 MSEKDTRLFTNIVYGVIQHRLTFEYYVSKLV---KHPGKLQNWVKELLYTAIYQMIYLDK 98
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A+ DE++++AK G LV G+L K+ + LP++ G + + +++
Sbjct: 99 VPNRAIFDESIKIAKFRGHDGIRRLVTGVLHKI------DRDGLPQITGMNAIEKQSIEA 152
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
S PVW++++ +G+ + ++ N + S+R N +K + + LV +L + V
Sbjct: 153 --SVPVWIIKQLNNQVGKAKTESILKSINQPANQSIRINIKK-IEKKALVKELERIGFTV 209
Query: 286 PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAA 345
+ + D + +K G+ L KEG +QDESA L V +D I+D CAA
Sbjct: 210 -RDSEVAADALV-LKDGV--AAHTALFKEGFYTIQDESAMLPVQSMDIDGDDYILDTCAA 265
Query: 346 PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTV 405
PGGKT +A L+ GLV A+D+++ +L + E A+ V+ + D R D
Sbjct: 266 PGGKTTQIAEHLT-TGLVVALDLHENKLHKIMENAERMGVSENVEVHACDARKVGDIYED 324
Query: 406 KC-DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464
DK+L+DAPCSGLG++ ++ ++R+ + LED+EEL ++Q +LD+ + VK GG +VYS
Sbjct: 325 NVFDKILVDAPCSGLGLIRRKPEIRYEKSLEDVEELAVVQGGILDSVATKVKVGGQIVYS 384
Query: 465 TCSIDPEENEERVEAFLLRHPEFS 488
TC+I +EN + V+ FL +HPEF
Sbjct: 385 TCTILNQENSKNVKDFLEKHPEFE 408
>gi|334340862|ref|YP_004545842.1| sun protein [Desulfotomaculum ruminis DSM 2154]
gi|334092216|gb|AEG60556.1| sun protein [Desulfotomaculum ruminis DSM 2154]
Length = 453
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 140/425 (32%), Positives = 216/425 (50%), Gaps = 29/425 (6%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPY 169
D T+I G +R +D ++ ++ ++ + ILR+G Y+I+ + +P
Sbjct: 41 DRAFATEITYGVLRNLNTIDWVLAHFL--KQPLAAQTAWIRNILRMGTYQILFMPRVPDS 98
Query: 170 AVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSH 229
A +E+V LAK GA VNG+LR + +++ P P+ + +A +SH
Sbjct: 99 AACNESVELAKKYGHAGAAKFVNGVLRNIARQQNDLDYPDPETD-----PVNYIALKHSH 153
Query: 230 PVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQ----- 284
P W+V RW K G E+ + L NN ++R N+ K +TR DL+ +L ++
Sbjct: 154 PTWLVERWLKEFGFEQTVALCQANNRPALNTIRTNTLK-ITRPDLIRRLAEEGVEARESQ 212
Query: 285 -VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCC 343
VP LH++ F+ ++ KEGL VQDES+ LV ++P G ++D
Sbjct: 213 YVPE--GLHINGFLSYRS-------LDSFKEGLFQVQDESSMLVAHALNPASGAKVLDVA 263
Query: 344 AAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS 403
+APGGKT ++A + G + A+DI+ +L ++ E + S I + AD R
Sbjct: 264 SAPGGKTTHVAQLMGDSGEIIAVDIHSHKLELIKENCVRLGITS-IHGLVADARDLPQKY 322
Query: 404 TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463
+ D VL+DAPCSGLGVL +R D RW R + + LQ ++L AA ++PGGVL+Y
Sbjct: 323 SGWADYVLVDAPCSGLGVLRRRPDSRWRRDPCQLPGVVRLQKDILQAAGRCLRPGGVLIY 382
Query: 464 STCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDF----VTKHGFFFSDPIKHSLDGA 519
STC+I EEN VE FL +PEF + ++P + G+ P H DG
Sbjct: 383 STCTITREENLGVVEDFLAGNPEFIMGDLRQVLPPGLDQEPTAEKGYLQLLPHIHGTDGF 442
Query: 520 FAARL 524
F ARL
Sbjct: 443 FIARL 447
>gi|20094975|ref|NP_614822.1| tRNA/rRNA cytosine-C5-methylase [Methanopyrus kandleri AV19]
gi|19888229|gb|AAM02752.1| tRNA/rRNA cytosine-C5-methylase [Methanopyrus kandleri AV19]
Length = 450
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 132/366 (36%), Positives = 191/366 (52%), Gaps = 15/366 (4%)
Query: 126 RRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPPYAVVDENVRLAKVALRP 185
R LD +I + + ++ + RI E+V D P V D L + P
Sbjct: 61 RGLLDEVIEDVLEITDDVTELDTWVRNAARIAVNEVVFEDGDPDEVADVLHGLVRRLANP 120
Query: 186 GAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQ-E 244
GA +V + LKD P P+ E DR L Y HP W++ RW + G +
Sbjct: 121 GAAAIVKAFT---LDLKDYEP-PEPEDE-LDR-----LKWEYYHPRWLIERWMEMFGDPD 170
Query: 245 EAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFIRVKTGLQ 304
E + L+ NN P ++R N+ K V +L +L K +V E LDE +++ GL
Sbjct: 171 EVVALLEANNRRPPLTIRVNTLK-VDPEELAERLQR-KYRVTVEPGRFLDEILKIPEGLP 228
Query: 305 NVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVY 364
+ + +EGL +QDE+A L AV++P+PG+ +VD CAAPGGKT +MA + G+G +
Sbjct: 229 -IGEMPEWEEGLFVIQDEAAALASAVLNPKPGEVVVDLCAAPGGKTTHMAQLMGGEGKIV 287
Query: 365 AIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVK-CDKVLLDAPCSGLGVLS 423
AID+++ R+ L E A+ V I T D R + + D VL+D PCS G +
Sbjct: 288 AIDVDEVRMERLREIAERMGVLDCIETHLMDGREAPEKLGREFADAVLVDPPCSADGTIP 347
Query: 424 KRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLR 483
K + RW +++E L Q ELL A + +VKPGG L+YSTCS+ PEE+EE V FL
Sbjct: 348 KNPERRWRITPDELERLPKFQYELLKAGAEMVKPGGRLLYSTCSMFPEEDEEVVRRFLDE 407
Query: 484 HPEFSI 489
HPEF +
Sbjct: 408 HPEFEL 413
>gi|366053068|ref|ZP_09450790.1| 16S rRNA methyltransferase B [Lactobacillus suebicus KCTC 3549]
Length = 451
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 129/424 (30%), Positives = 218/424 (51%), Gaps = 42/424 (9%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L D D RL+T+IV G I+ R L++ + +K S ++ LLL + Y+ LD
Sbjct: 43 LSDADRRLLTNIVYGVIQHRITLEYWLAPFIKGKKLESWVQVLLL----MSLYQYKYLDK 98
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P +A+ DE++++AK+ PG LV +L ++ +L+ Q L+T
Sbjct: 99 VPEWAITDESIKIAKIKGHPGIRKLVTAVLHNIL---RQGVRSFDQLQD----QTTRLST 151
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
YS P W++ G + +++ N S+R ++ ++ L V
Sbjct: 152 EYSVPSWLIDELASQYGDSKTHEILKKINQPAHQSIRV--KQSADTEQVIKSLEDDGFSV 209
Query: 286 PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAA 345
+ + + +G ++ ++ L ++G +QDESA L V + PG ++D CAA
Sbjct: 210 KRST---VTSYALIISG-KSAAESPLFRDGTITIQDESAMLAVDSMKINPGDQVLDACAA 265
Query: 346 PGGKTLYMASCL--SGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT----F 399
PGGKT+ +A L + G V A+DI++ +++++ + AK NSVI I D R F
Sbjct: 266 PGGKTIQIAEHLDINNGGKVTALDIHQHKIKLIKDNAKRMHTNSVIDAIQLDARKVSEKF 325
Query: 400 ADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGG 459
AD S D++L+DAPCSG G++ ++ ++R+ + LED L+ +Q +LDA + VK GG
Sbjct: 326 ADES---FDRILVDAPCSGFGLIRRKPEIRYEKTLEDSFHLQTIQLNILDAVATKVKKGG 382
Query: 460 VLVYSTCSIDPEENEERVEAFLLRHPEFSI--------------DPADGLVPSDFVTKHG 505
++ YSTC+I +EN + V FL HP+F++ D ++PSDF + G
Sbjct: 383 IITYSTCTILQQENNQVVNKFLQSHPDFTLQKTETSNQLFNDREDKTLTILPSDFDSD-G 441
Query: 506 FFFS 509
FF +
Sbjct: 442 FFVA 445
>gi|22297753|ref|NP_681000.1| RNA-binding protein [Thermosynechococcus elongatus BP-1]
gi|22293930|dbj|BAC07762.1| RNA-binding protein [Thermosynechococcus elongatus BP-1]
Length = 442
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 152/438 (34%), Positives = 211/438 (48%), Gaps = 50/438 (11%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQ-ILRIGFYEIVKLD 165
L D LVT++V GTIR +R LD LI C + PL +Q +LR+G Y++ LD
Sbjct: 35 LHGSDRTLVTELVYGTIRQQRTLDTLIQGFC------RQLPPLPVQLVLRLGLYQLRYLD 88
Query: 166 -MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDN------NSLPLPKLEGNDRA 218
+P +A V +V L K G LVNG+LR+ + LPL
Sbjct: 89 RIPAHAAVHSSVELVKQIGLEGFAKLVNGVLRRYSRCTTDPLEAFIAHLPL--------- 139
Query: 219 QARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQL 278
L YS P ++ W + L +E L W N P LR N + +T L+
Sbjct: 140 -VSQLGCRYSFPDELIASWLERLPLQECTALCQWFNQPPRLDLRLNPLR-ITADQLIADF 197
Query: 279 NL--LKLQ----VPHELSL-HLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVV 331
LQ +P L L H + ++ G G +VQD +A V ++
Sbjct: 198 ETAGYGLQPIPPLPQGLVLSHCGQSMQELPGY---------AAGHWSVQDRAAQWVSHLL 248
Query: 332 DPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRT 391
DPQPG+ ++D CAAPGGKT ++A + QG V A D + RLR L + + S+
Sbjct: 249 DPQPGEVVIDACAAPGGKTTHIAELMEDQGRVIACDRSPHRLRKLAQNRDRLGLKSI--E 306
Query: 392 IHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAA 451
IH A + D+VLLDAPCSG G L + AD RW + EL LQ +LL
Sbjct: 307 IHILDSAAAGDFAAVGDRVLLDAPCSGTGTLHRHADARWRPLKRRLGELLPLQAQLLATV 366
Query: 452 SLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTK---HGFFF 508
S VKP G+LVY+TCS++P ENE +++ FL HP++ I+P P +F K G+
Sbjct: 367 SQWVKPYGLLVYATCSLEPAENEAQIQQFLAHHPQWHIEPP----PPNFPLKAAPEGWIT 422
Query: 509 SDPIKHSLDGAFAARLVR 526
P + +DG F RL R
Sbjct: 423 VWPQQQDMDGFFMVRLRR 440
>gi|431449111|ref|ZP_19513952.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1630]
gi|430585503|gb|ELB23788.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1630]
Length = 452
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 132/431 (30%), Positives = 232/431 (53%), Gaps = 35/431 (8%)
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVG 120
R ++ + L R+ GGA+++LL NEM + +L+ +D+ L T+++
Sbjct: 13 RYMALLTLERVNKGGAYSNLLL--------NEM--------IKQSELNQKDVGLFTELIY 56
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLA 179
GTI +R L+ + L K ++ + +L + Y++ LD +P +A+++E V +A
Sbjct: 57 GTISHQRLLEFYVAPLIAKAK---KVDDWVKTLLYLSVYQLEFLDKVPAHAILNEAVEIA 113
Query: 180 KVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTK 239
KV PG G VNG+LR + P L+G R L+ S P+WM +R
Sbjct: 114 KVKGNPGTGKFVNGVLR------NYQRQGAPDLQGIADPIER-LSVKISLPLWMTKRLVD 166
Query: 240 YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFIRV 299
+G EE KL + S R ++R+ ++R + L + ++ E S I
Sbjct: 167 QIGYEETEKLGLSLYHPSHASARVDTRR-LSRDQAITVLQ--EEEITAEKSQVSPYGIVA 223
Query: 300 KTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCL-- 357
+ G ++ + L +G+ +QDES+ LV + +P ++D CAAPGGKT ++AS L
Sbjct: 224 RKG--HLASSSLFHDGVMTIQDESSMLVAPSMQIEPEHHVLDACAAPGGKTTHIASFLDP 281
Query: 358 SGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVKCDKVLLDAPC 416
S G V A+D+++ +++++ + A V+S + D R + + D++L+DAPC
Sbjct: 282 SCGGEVVALDVHEHKVKLIEDNAARLGVSSAVYAQKMDAREVSKQFEAEQFDRILVDAPC 341
Query: 417 SGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEER 476
SGLG+L ++ D+R+ ++ +++ L +Q E+L++ + +K G+L YSTC+I EEN++
Sbjct: 342 SGLGLLRRKPDIRYKKQPDELANLPKIQLEILESCAPALKSSGILTYSTCTILKEENQDV 401
Query: 477 VEAFLLRHPEF 487
V AFL RHP+F
Sbjct: 402 VSAFLERHPDF 412
>gi|355670264|ref|ZP_09057119.1| ribosomal RNA small subunit methyltransferase B [Clostridium
citroniae WAL-17108]
gi|354816336|gb|EHF00924.1| ribosomal RNA small subunit methyltransferase B [Clostridium
citroniae WAL-17108]
Length = 446
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 133/407 (32%), Positives = 200/407 (49%), Gaps = 32/407 (7%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
LD D +T + GT+ + +DH+I + + M+PL+ +LR+ Y+I+ +D
Sbjct: 43 LDKPDRAFITRVTEGTLEYLLQIDHIINR--YSKTKTEKMKPLIRNLLRMSVYQILYMDR 100
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A +E V+LA G VNG+LR + KD+ P L
Sbjct: 101 VPDSAACNEAVKLAVKRHFSGLKGFVNGVLRTVSREKDSLVFDTPSLA------------ 148
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
YS P WM W K G+E+A + D +R N ++RA L L Q
Sbjct: 149 -YSIPQWMYDMWEKEYGREKAGAIAASFLRDGPTWVRCN----LSRASRKEILESLASQG 203
Query: 286 PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAA 345
L E + +G + + G VQD ++ LV + DP+ G I+D CAA
Sbjct: 204 VAVTGLSWLESMISISGYDYLESLESFRNGWIQVQDVTSALVSELADPKEGDYIIDVCAA 263
Query: 346 PGGKTLYMASCLSGQGLVYAIDINKGRLRILNET-AKLHQVNSVIRTIHADLRTFADNST 404
PGGK+L++A L G G+V A D+++ ++ ++ E A+ N I+ + D +++
Sbjct: 264 PGGKSLHLADKLKGTGMVEARDLSEQKVAMIEENMARFGASN--IKAVVWDALVTDEDAR 321
Query: 405 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464
K D V+ D PCSGLG++ K+ D+++N +E M EL LQ E+L A+ VKPGG LVYS
Sbjct: 322 EKADIVIADLPCSGLGIIGKKPDIKYNMTMEKMAELASLQREILAASWEYVKPGGTLVYS 381
Query: 465 TCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDP 511
TC+ID +ENEE L R P L P D + G F +P
Sbjct: 382 TCTIDTKENEENARWLLSRFP---------LEPVDLTNRVGNAFDEP 419
>gi|293553676|ref|ZP_06674300.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1039]
gi|291602251|gb|EFF32479.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1039]
Length = 452
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 133/431 (30%), Positives = 231/431 (53%), Gaps = 35/431 (8%)
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVG 120
R ++ + L R+ GGA+++LL NEM + +L+ +D+ L T+++
Sbjct: 13 RYMALLTLERVNKGGAYSNLLL--------NEM--------IKQSELNQKDVGLFTELIY 56
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLA 179
GTI +R L+ + L K ++ + +L + Y++ LD +P +A+++E V +A
Sbjct: 57 GTISHQRLLEFYVAPLIAKAK---KVDDWVKTLLYLSVYQLEFLDKVPAHAILNEAVEIA 113
Query: 180 KVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTK 239
KV PG G VNG+LR + P L+G R L+ S P+WM +R
Sbjct: 114 KVKGNPGTGKFVNGVLR------NYQRQGAPDLQGIADPIER-LSVKISLPLWMTKRLVD 166
Query: 240 YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFIRV 299
+G EE KL + S R ++R+ ++R + L + ++ E S I
Sbjct: 167 QIGYEETEKLGLSLYQPSHASARVDTRR-LSRDQAITVLQ--EEEITAEKSQVSPYGIVA 223
Query: 300 KTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCL-- 357
K G ++ + L +G+ +QDES+ LV + +P ++D CAAPGGKT ++AS L
Sbjct: 224 KKG--HLASSSLFHDGVMTIQDESSMLVAPSMQIEPEHHVLDACAAPGGKTTHIASFLDP 281
Query: 358 SGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVKCDKVLLDAPC 416
S G V A+D+++ +++++ + A V+S + D R + + D++L+DAPC
Sbjct: 282 SCGGEVVALDVHEHKVKLIEDNAARLGVSSAVYAQKMDAREVSKQFEAEQFDRILVDAPC 341
Query: 417 SGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEER 476
SGLG+L ++ D+R+ ++ +++ L +Q E+L+ + +K G+L YSTC+I EEN++
Sbjct: 342 SGLGLLRRKPDIRYKKQPDELANLPKIQLEILERCAPALKSSGILTYSTCTILKEENQDV 401
Query: 477 VEAFLLRHPEF 487
V AFL RHP+F
Sbjct: 402 VSAFLERHPDF 412
>gi|33860983|ref|NP_892544.1| Sun protein (Fmu protein) [Prochlorococcus marinus subsp. pastoris
str. CCMP1986]
gi|33639715|emb|CAE18885.1| Sun protein (Fmu protein) [Prochlorococcus marinus subsp. pastoris
str. CCMP1986]
Length = 437
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 131/429 (30%), Positives = 220/429 (51%), Gaps = 32/429 (7%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEK-TFSSMEPLLLQILRIGFYE 160
+ + + D+ +T++ G IR+R++LD I H K + + P L +L IG Y+
Sbjct: 32 LKNYEFNSLDIAFITELSFGCIRYRKFLDLWID---HTSKLSHTKQPPKLRWLLHIGLYQ 88
Query: 161 IVKLDMPPY-AVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQ 219
++K+D P+ A + V +AK G VN ILR V + +P K+ + +
Sbjct: 89 LLKMDKIPFSAAISSTVEVAKKTDLKGLAGTVNAILRNTVRHIEKEHVP--KISSD---E 143
Query: 220 ARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLN 279
L+++ S P+W+V+ ++G +EA + N PS LR NS K DL LN
Sbjct: 144 IERLSSLESLPIWLVKEIVNWVGIKEAKNIAKAFNKKPSIDLRINSLK----TDLNKFLN 199
Query: 280 -LLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQS 338
L + + L I + + +++ + +GL VQD S+ V +++P G+
Sbjct: 200 ELAECNINATAISQLKNGIALNSNPRSIKKLPGYSDGLWVVQDRSSQWVAPLLNPMKGEK 259
Query: 339 IVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT 398
I+D C+APG KT ++A + + A+D ++ RL+IL + + SV +T+ AD
Sbjct: 260 ILDACSAPGSKTTHLAQLANDDAEILAVDRSEKRLKILQSNLERLNIKSV-KTLKADATN 318
Query: 399 FAD---NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLV 455
D N DK+L+DAPCSG+G L++ D RW+ + + +L +LQ+ LL++ L+
Sbjct: 319 LVDIQPNLISYFDKILIDAPCSGIGTLARNPDSRWSLSKDKINQLILLQERLLESVLPLL 378
Query: 456 KPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHS 515
K G LVYSTC+I PEEN ++ FL ++ E +D ++P F +P
Sbjct: 379 KRNGTLVYSTCTICPEENNFLIKRFLTKNKEIKLDSEKQILPK---------FDEP---- 425
Query: 516 LDGAFAARL 524
DG +AA++
Sbjct: 426 GDGFYAAKI 434
>gi|300811705|ref|ZP_07092180.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
delbrueckii subsp. bulgaricus PB2003/044-T3-4]
gi|300497332|gb|EFK32379.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
delbrueckii subsp. bulgaricus PB2003/044-T3-4]
Length = 438
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 139/417 (33%), Positives = 217/417 (52%), Gaps = 27/417 (6%)
Query: 113 RLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAV 171
RL T++V GTI+++ YL++ + L ++PLLL + Y+I LD +P AV
Sbjct: 42 RLATNLVYGTIQYQLYLEYQLKDLVKARLREPYIKPLLL----MSAYQIFFLDKVPNRAV 97
Query: 172 VDENVRLAKVALRPGAGN--LVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSH 229
+DE +LAK RP + LVNGILR L+ ++ LP+ + D L+ S
Sbjct: 98 LDEANKLAKGYGRPKSSGYRLVNGILRSLLRRRE----VLPEKDAPDY-----LSVKCSM 148
Query: 230 PVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHEL 289
P+W+ + G+ A K+M NS +R ++ R +V L+ P E
Sbjct: 149 PLWLSDYFVANWGKSRAEKIMASFNSKAKNEIRISALADEKR--VVRDLDRAHF-APQES 205
Query: 290 SLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGK 349
L + + G ++ K+G VQDE+A LV D + + +D C+APGGK
Sbjct: 206 PLASRSYALSRGG---IVMTDFFKDGEVTVQDEAASLVAEAFDFKGNEQALDACSAPGGK 262
Query: 350 TLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVKCD 408
T+ +A L G V A+DI++ +LR++ E A +V ++ D R + S + D
Sbjct: 263 TIQIAEQLP-DGQVTALDIHEKKLRLVKENAARMRVADRVKVKALDARKAREYFSGQEFD 321
Query: 409 KVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSI 468
K+L+DAPCSGLG+L ++ ++R+ + ED+ L +Q ++L+ S L+K GG LVYSTCSI
Sbjct: 322 KILIDAPCSGLGLLRRKPEIRYTKTAEDISHLAEIQLDILNEVSGLLKKGGELVYSTCSI 381
Query: 469 DPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARLV 525
EENEE V FL HP+F++ P + + G P ++ DG F A+
Sbjct: 382 SVEENEENVRKFLAAHPDFALKPFE---TAKISAPKGMLKILPDSYNSDGFFIAKFT 435
>gi|227893309|ref|ZP_04011114.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus ultunensis
DSM 16047]
gi|227864889|gb|EEJ72310.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus ultunensis
DSM 16047]
Length = 455
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 154/475 (32%), Positives = 244/475 (51%), Gaps = 54/475 (11%)
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVG 120
RA+S L+++ G+++++ S +N F+ +L D L T IV
Sbjct: 20 RAISLATLIKVLEDGSYSNI-------SLNN---------SFKNSNLSVADQNLATRIVY 63
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLA 179
GTI++R +L++ + L + T + PLLL + Y+I+ L+ +P AV+DE +LA
Sbjct: 64 GTIQYRLFLEYQLKGLIRTKLTERYINPLLL----MSLYQIIFLNKVPNRAVLDEANKLA 119
Query: 180 KVALRPGAGN--LVNGILRKLV-----LLKDNNSLPLPKLEGNDRAQARALATIYSHPVW 232
K R + +VNGILR + L K+NN L L+ S P W
Sbjct: 120 KQFGRHHSSGYRIVNGILRSFIRRGVILPKENNKLEY-------------LSVKESVPEW 166
Query: 233 MVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLH 292
+V+ + K LG E ++ N +R +S V ++ +L Q P +L
Sbjct: 167 LVKYFVKNLGIERTQSILTSINKPAKNCVRISSL--VNATEVFQRLKDEGYQ-PKWSNLS 223
Query: 293 LDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQ--SIVDCCAAPGGKT 350
D + +K G + Q+ L K+G +QDE+A LVV D Q ++D C+APGGKT
Sbjct: 224 -DHDVTLKHG--GIGQSDLFKKGQLTIQDEAASLVVEAFDFDKTQVEHVLDACSAPGGKT 280
Query: 351 LYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-NSTVKCDK 409
+ +A L+ G V A+DI++ +LR++ E AK V I+T D R + + K
Sbjct: 281 VQIAENLA-DGDVIALDIHEKKLRLVAENAKRMHVADKIKTQACDARKAGKIFNKGEFTK 339
Query: 410 VLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSID 469
+L+DAPCSGLG+L ++ ++R+ + L+D+ L+ +Q +LD+ S+ ++ G LVYSTCSI
Sbjct: 340 ILVDAPCSGLGLLRRKPEIRYTKSLQDLHSLQKIQLAILDSVSVPLQKNGELVYSTCSIS 399
Query: 470 PEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARL 524
EENEE V+ FL RH +F + P S +K G P ++ DG F A+
Sbjct: 400 MEENEEVVKKFLQRHSQFVLKP---FKLSKLESKTGMLKIMPDQNGNDGFFIAKF 451
>gi|312134888|ref|YP_004002226.1| sun protein [Caldicellulosiruptor owensensis OL]
gi|311774939|gb|ADQ04426.1| sun protein [Caldicellulosiruptor owensensis OL]
Length = 423
Score = 190 bits (483), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 127/411 (30%), Positives = 217/411 (52%), Gaps = 19/411 (4%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
F K +++D L ++V G +R++ +D+ I + + +L ILR+ YE+
Sbjct: 21 FHQKLKNEKDRALFVELVHGVLRYKNLIDYYINFVTKK----GVKDKRILNILRVATYEL 76
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
+ L+ +P YA V+E +A + P VN ILR ++ K+ L +++ D
Sbjct: 77 LFLEKIPEYATVNEACEVAS-KISPHLKAFVNAILRNIIRNKNQIEESLERIKEIDLKSY 135
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
++ S+P +++ + G E+A+K++ + N+ P ++ N++K T D+++Q L
Sbjct: 136 ISIKL--SYPKFLIDYLEESYGFEKALKILEFLNTRPPVGIKINTKK--TNVDILVQ-EL 190
Query: 281 LKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAV--VDPQPGQS 338
K V +E++ H E I + G N+ L K+G QD ++ LVV + D + +
Sbjct: 191 RKSGVEYEVNSHNSEIIYILKG--NIKDTQLYKQGYFYFQDLASSLVVGLNKEDFKKAKK 248
Query: 339 IVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT 398
++D CAAPGGKT A + G V A DIN +L +L E +++I +D
Sbjct: 249 VLDLCAAPGGKTFNCAEVIDG--FVVACDINDHKLDVLRENILRLGFDNII-VAKSDAEI 305
Query: 399 FADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPG 458
F + + D V+ D PC+G G + K+ D++WN+ +D+E L LQ +LD A+ +K G
Sbjct: 306 FNPDFAGRFDIVIADLPCTGFGAIRKKPDIKWNKSYQDIENLHELQVRILDNAASYLKRG 365
Query: 459 GVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFS 509
G+L YSTC++ +ENEE V FL +H +FS+ + P +F GFF S
Sbjct: 366 GLLFYSTCTLGRKENEETVLKFLDKHKDFSLVSQITIFPDEFKC-DGFFIS 415
>gi|336113760|ref|YP_004568527.1| sun protein [Bacillus coagulans 2-6]
gi|335367190|gb|AEH53141.1| sun protein [Bacillus coagulans 2-6]
Length = 447
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 133/415 (32%), Positives = 214/415 (51%), Gaps = 35/415 (8%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPY 169
D L+T+I GT++ ++ LD+ + +E + +LR+ Y++V LD +P
Sbjct: 43 DRALLTEITYGTLQRKQTLDYFLAPFLR-----KKIENWVRILLRLSIYQMVYLDKIPDR 97
Query: 170 AVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSH 229
A++ E V +AK G +VNG+LR + + L ++E D + ++AT SH
Sbjct: 98 AIIFEAVEIAKKRGHRGISGMVNGVLRAI---QRGGLRSLKEIE--DPLERLSVAT--SH 150
Query: 230 PVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLN-LLKLQVPHE 288
P W+V RW + G + ++ N P + R N + RA + + L++ E
Sbjct: 151 PHWLVARWAEAYGYKTTKEMCEANLIPPLQTARVN----LNRASVEEVIEKLVREGFTVE 206
Query: 289 LSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGG 348
S + E +R + G N+ ++ KEGL +QDES+ V + Q GQ I+D CAAPGG
Sbjct: 207 RSPVIPEAVRSRKG--NLARSACFKEGLFTIQDESSMAVAYALCIQEGQRILDACAAPGG 264
Query: 349 KTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCD 408
KT ++A L G G V A+D++ + +++ E A+ V A D
Sbjct: 265 KTTHIAEKLEGTGEVIALDLHPHKAKLVRENAERLGTGQVEAVAMDSRDAGAHFEKTTFD 324
Query: 409 KVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSI 468
++L+DAPC+G GVL ++ D+++ + ++D+ LK +Q +L S L+KP G+LV+STC++
Sbjct: 325 RILVDAPCTGFGVLRRKPDIKYAKTVDDIHALKQVQLSILSGVSGLLKPDGILVFSTCTV 384
Query: 469 DPEENEERVEAFLLRHPEFSIDP----------ADG----LVPSDFVTKHGFFFS 509
D EENE +E FL HPEF P DG + P DF GFF +
Sbjct: 385 DREENEGTIETFLQEHPEFEPYPLHVPEAMESLVDGYRMQIFPQDF-GGDGFFIA 438
>gi|153809822|ref|ZP_01962490.1| hypothetical protein RUMOBE_00203 [Ruminococcus obeum ATCC 29174]
gi|149834000|gb|EDM89080.1| ribosomal RNA small subunit methyltransferase B [Ruminococcus obeum
ATCC 29174]
Length = 450
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 138/426 (32%), Positives = 220/426 (51%), Gaps = 35/426 (8%)
Query: 114 LVTDIVGGTIRWRRYLDHLICLLCHDEKTFSS-----MEPLLLQILRIGFYEIVKLD-MP 167
+T + GT+ +R +D++I +FS M+P + +ILR Y++ +D +P
Sbjct: 46 FITRVCEGTLEYRILIDYII-------DSFSKIPVDKMKPPIREILRSAVYQLKFMDRVP 98
Query: 168 PYAVVDENVRLAKVALRPGAGNL---VNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
AV +E V+LA+ + G NL VNG+LR + + + L P E N R L+
Sbjct: 99 DSAVCNEAVKLAQ---KKGFYNLKPFVNGVLRTVA--RQMDELEYPPREEN---LVRYLS 150
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQ 284
YS P +V RW G+E K++ + ++R R + D + + +L
Sbjct: 151 VRYSMPEELVERWLADYGEETTEKMLADFLEEKPVTVRC--RTYLNSVDKICE-SLKNQG 207
Query: 285 VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 344
V E + +L R+ +G +++ +G VQD S+ LV + +PQ G ++D CA
Sbjct: 208 VKVEQAPYLPYAKRI-SGYNHILALDAFIQGKMVVQDVSSMLVAEIANPQKGDYVIDMCA 266
Query: 345 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSV-IRTIHADLRTFADNS 403
APGGK+L++ + G G V A DI++ ++ ++ E + ++NS+ ++ D F S
Sbjct: 267 APGGKSLHIGDKMEGFGTVDARDISQYKVNLIEEN--IQRLNSINVQAKVQDATIFDVES 324
Query: 404 TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463
K D VL D PCSG GV+ K+ ++++ + EEL ILQ +LD A+ VKP GVLV+
Sbjct: 325 ECKADIVLADVPCSGYGVIGKKPEIKYRSTTQKEEELVILQRTILDKAAEYVKPRGVLVF 384
Query: 464 STCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDF---VTKHGFFFSDPIKHSLDGAF 520
STC+I EENEE + F+ HP F ++ D +P + T G+ P H DG F
Sbjct: 385 STCTIAKEENEENMMWFMNNHP-FKLESIDEFIPEELRSETTGLGYLQMLPGVHGTDGFF 443
Query: 521 AARLVR 526
AR R
Sbjct: 444 IARFRR 449
>gi|381209846|ref|ZP_09916917.1| hypothetical protein LGrbi_07971 [Lentibacillus sp. Grbi]
Length = 448
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 133/452 (29%), Positives = 237/452 (52%), Gaps = 42/452 (9%)
Query: 96 VERTLGF---------RTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSM 146
+ER GF +++ + +D L+T+IV GTI+ + LD+ + +K +
Sbjct: 17 IERDSGFSHLLIDHEIKSRSIPSKDEALMTEIVYGTIQRKLTLDYYLDAFVDTKK---KI 73
Query: 147 EPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVL--LKD 203
+P + +LR+ Y++ LD +P +A++ E V +AK G + VNG+LR + D
Sbjct: 74 KPWVRMLLRMSVYQMHFLDRVPDHAIIHEAVEIAKHRGHKGIASFVNGVLRSMQRKGAPD 133
Query: 204 NNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRA 263
+++ ++A+ LA SHP W+V+RW G + + N + S+R
Sbjct: 134 TDAI---------ESKAKQLAIETSHPEWLVKRWIDMYGYDMTRDMCDANLARKPLSVRV 184
Query: 264 NSRKGVTRADLVMQLNLLKLQV-PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDE 322
K ++R + +L+ L + P + S + I V G N+++ L +EG +QD+
Sbjct: 185 QPLK-ISRRQAMDELHELGFETRPSDFS---GQGIIVDQG--NILRTRLFEEGYVTIQDQ 238
Query: 323 SAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKL 382
S+ LV +++ +PG S++D C+APGGK + A + +G + A D++ + +N A
Sbjct: 239 SSMLVTEMLNAEPGMSVLDACSAPGGKVTHTAEKMQNKGSICAYDLHAKKAEQINHKAAE 298
Query: 383 HQVNSVIRTIHADLRTFAD-NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELK 441
+ ++I D R + + D++L+DAPCSGLGV+ + D+++N+ D+ L
Sbjct: 299 LDL-TIIDANAGDARKLLEKHEKGSFDRILIDAPCSGLGVIRGKPDIKYNKTENDIYRLA 357
Query: 442 ILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPA-DGLVPSDF 500
+Q ++L+ + L+K GG+L+YSTC++D EN+E FL ++PEF +D A +PS
Sbjct: 358 QIQTDILENVAPLLKRGGLLIYSTCTVDKTENDEVAANFLTQNPEFMLDRAFFEQLPS-- 415
Query: 501 VTKHGFFFSD------PIKHSLDGAFAARLVR 526
+ +H S+ P S DG F R+ R
Sbjct: 416 MIQHSPGHSEIGLQLFPQTFSTDGFFLTRIKR 447
>gi|115376613|ref|ZP_01463843.1| ribosomal RNA small subunit methyltransferase B [Stigmatella
aurantiaca DW4/3-1]
gi|115366356|gb|EAU65361.1| ribosomal RNA small subunit methyltransferase B [Stigmatella
aurantiaca DW4/3-1]
Length = 425
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 139/422 (32%), Positives = 210/422 (49%), Gaps = 20/422 (4%)
Query: 108 DDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMP 167
D RD L T++ GT R + LD+ I ++ +ME +L LRIG Y++ +P
Sbjct: 23 DARDTALATELAYGTTRRQLALDYAITRFA--DRKLDAMEDRVLAALRIGAYQLFYTRVP 80
Query: 168 PYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIY 227
A V E V+ K A VN ILRKL L PLP + A L+
Sbjct: 81 ARAAVAETVQALKDLGVGRAAGFVNAILRKLAALP---GAPLPP----EDDVAEHLSVRE 133
Query: 228 SHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPH 287
SHP W+V RW + G+E A ++V +N P +R N+ K VTR L+ Q + L+V
Sbjct: 134 SHPKWLVERWLRQFGRERAEAMLVADNQTPPVVVRTNTAK-VTREALLAQFREVGLEVQP 192
Query: 288 ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLV-VAVVDPQPGQSIVDCCAAP 346
+ + L++V EGL VQDE+A LV V P+ +++ D CAAP
Sbjct: 193 TPVSPVGIVLPSLGRLEDVYG---YSEGLWQVQDEAAQLVGVYAAIPENARTL-DVCAAP 248
Query: 347 GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVK 406
GGK + A V A+D++ +L + AK + S +R + D D + +
Sbjct: 249 GGKACHQAETHE----VVAMDLHANKLPKIVSEAKRLGLLSRLRAVAHDATKPYDEALGE 304
Query: 407 CDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTC 466
VL+DAPCSGLG L + +LR+ R D+ L LQ +L+ +V PGG+L+Y+ C
Sbjct: 305 FQAVLVDAPCSGLGTLRRHPELRYRRGEADLGRLATLQRRILENCQEVVPPGGLLIYAVC 364
Query: 467 SIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARLVR 526
+++P+E +++V+ FL HPE++ +P L + + P DG FAARL +
Sbjct: 365 TLEPQEGQDQVDMFLRSHPEWTAEPPV-LSGVKLPMNQAWLRTLPGPEGWDGFFAARLRK 423
Query: 527 AF 528
+
Sbjct: 424 LY 425
>gi|104774278|ref|YP_619258.1| RNA methylase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
11842]
gi|103423359|emb|CAI98212.1| Putative RNA methylase [Lactobacillus delbrueckii subsp. bulgaricus
ATCC 11842]
Length = 438
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 139/417 (33%), Positives = 215/417 (51%), Gaps = 27/417 (6%)
Query: 113 RLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAV 171
RL T++V GTI+++ YL++ + L ++PLLL + Y+I LD +P AV
Sbjct: 42 RLATNLVYGTIQYQLYLEYQLKDLVKARLREPYIKPLLL----MSAYQIFFLDKVPNRAV 97
Query: 172 VDENVRLAKVALRPGAGN--LVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSH 229
+DE +LAKV RP + LVNGIL L L+ LP ++ L+ S
Sbjct: 98 LDEANKLAKVYGRPKSSGYRLVNGILHSL--LRRGEVLP-------EKDAPDYLSVKCSM 148
Query: 230 PVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHEL 289
P+W+ + G+ A K+M NS +R ++ R +V L+ P E
Sbjct: 149 PLWLSDYFVANWGKSRAEKIMASFNSKAKNEIRISALADEKR--VVRDLDRAHF-APQES 205
Query: 290 SLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGK 349
L + + G ++ K+G VQDE+A LV D + + +D C+APGGK
Sbjct: 206 PLASRSYALSRGG---IVMTDFFKDGEVTVQDEAASLVAEAFDFKGNEQALDACSAPGGK 262
Query: 350 TLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVKCD 408
T+ +A L G V A+DI++ +LR++ E A +V ++ D R + S + D
Sbjct: 263 TIQIAEQLP-DGQVTALDIHEKKLRLVKENAARMRVADRVKVKALDARKAREYFSGQEFD 321
Query: 409 KVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSI 468
K+L+DAPCSGLG+L ++ ++R+ + ED+ L +Q ++L+ S L+K GG LVYSTCSI
Sbjct: 322 KILIDAPCSGLGLLRRKPEIRYTKTAEDISHLAEIQLDILNEVSGLLKKGGELVYSTCSI 381
Query: 469 DPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARLV 525
EENEE V FL HP+F++ P + + G P ++ DG F A+
Sbjct: 382 SVEENEENVRKFLAAHPDFALKPFE---TAKISAPKGMLKILPDSYNSDGFFIAKFT 435
>gi|435853625|ref|YP_007314944.1| ribosomal RNA small subunit methyltransferase RsmB/transcription
antitermination factor NusB [Halobacteroides halobius
DSM 5150]
gi|433670036|gb|AGB40851.1| ribosomal RNA small subunit methyltransferase RsmB/transcription
antitermination factor NusB [Halobacteroides halobius
DSM 5150]
Length = 445
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 137/431 (31%), Positives = 225/431 (52%), Gaps = 30/431 (6%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD 165
+LD RD L T ++ G RWR LD +I + + M P + LR+G Y+I LD
Sbjct: 34 NLDKRDRSLATQLIYGVTRWRNSLDWVINQFAN--RKVKKMTPWVRNALRLGVYQINYLD 91
Query: 166 MPPYAVV-DENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
P V +E V +AK GA +NGILR ++ ++ + P LE + + +
Sbjct: 92 RIPNPVACNETVEVAKAHCNRGAIKFINGILRNII--RNLAEITYPSLEEDP---VQYIR 146
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQ 284
YS P W+V+RW KY G E+ IK+ N P +R N+ K + L+ +L
Sbjct: 147 YKYSQPQWLVQRWRKYFGTEKTIKICQTLNQIPPMIIRTNTLK-LDSEQLISKL------ 199
Query: 285 VPHELSLHLDEFIRVKTGLQ-----NVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSI 339
E + E +VK + + + G VQ S+ LV ++ PQ +
Sbjct: 200 --EEEGISAKEVSQVKEAVNLLDYPAIASIDSFQAGNFIVQGLSSMLVAHLLKPQEDDLV 257
Query: 340 VDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF 399
VD C+APGGKT ++A + +G + A++++K ++ ++ E + +N+V D R
Sbjct: 258 VDLCSAPGGKTTHLAQVMENRGQINAVELHKAKVNLIKENCQRLGINNV-EFYCDDGREI 316
Query: 400 ADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGG 459
+ T + DK+L+DAPCSGLG+++K+ ++RW+++ +D++EL+ LQ ELL+ A+ +KPGG
Sbjct: 317 S--FTQQADKILVDAPCSGLGIMAKKPEIRWHKKPQDLKELQQLQLELLNNAASFLKPGG 374
Query: 460 VLVYSTCSIDPEENEERVEAFLLRHPEFSI----DPADGLVPSDFVTKHGFFFSDPIKHS 515
L+Y+ C+ EE E V+ F+ +P+FSI A D+ + G+ P S
Sbjct: 375 ELLYTVCTFTFEETEAVVKKFMNDNPDFSIVDLKSQAVTYGLEDYY-QTGYLKIVPDTSS 433
Query: 516 LDGAFAARLVR 526
+G F A+L +
Sbjct: 434 WEGFFIAKLTK 444
>gi|313124092|ref|YP_004034351.1| tRNA and rRNA cytosine-c5-methylase [Lactobacillus delbrueckii
subsp. bulgaricus ND02]
gi|312280655|gb|ADQ61374.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus delbrueckii
subsp. bulgaricus ND02]
Length = 438
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 145/454 (31%), Positives = 226/454 (49%), Gaps = 31/454 (6%)
Query: 76 AFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICL 135
A A L+ +GS N + + L + RL T++V GTI+++ YL++ +
Sbjct: 9 ALATLMKVINQGSYSN----ISLNHALKAAKLPGEESRLATNLVYGTIQYQLYLEYQLKD 64
Query: 136 LCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGN--LVN 192
L ++PLLL + Y+I LD +P AV+DE +LAK RP + LVN
Sbjct: 65 LVKARLREPYIKPLLL----MSAYQIFFLDKVPNRAVLDEANKLAKAYGRPKSSGYRLVN 120
Query: 193 GILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVW 252
GIL L L+ LP ++ L+ S P+W+ + G+ A K+M
Sbjct: 121 GILHSL--LRRGEVLP-------EKDAPDYLSVKCSMPLWLSDYFVANWGKSRAEKIMAS 171
Query: 253 NNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLL 312
NS +R ++ R +V L+ P E L + + G ++
Sbjct: 172 FNSKAKNEIRISALADEKR--VVRDLDRAHF-APQESPLASRSYALSRGG---IVMTDFF 225
Query: 313 KEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGR 372
K+G VQDE+A LV D + + +D C+APGGKT+ +A L G V A+DI++ +
Sbjct: 226 KDGEVTVQDEAASLVAEAFDFKGNEQALDACSAPGGKTIQIAEQLP-DGQVTALDIHEKK 284
Query: 373 LRILNETAKLHQVNSVIRTIHADLRTFADN-STVKCDKVLLDAPCSGLGVLSKRADLRWN 431
LR++ E A +V ++ D R + S + DK+L+DAPCSGLG+L ++ ++R+
Sbjct: 285 LRLVKENAARMRVADRVKVKALDARKAREYFSGQEFDKILIDAPCSGLGLLRRKPEIRYT 344
Query: 432 RRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDP 491
+ ED+ L +Q ++L+ S L+K GG LVYSTCSI EENEE V FL HP+F++ P
Sbjct: 345 KTAEDISHLAEIQLDILNEVSGLLKKGGELVYSTCSISVEENEENVRKFLAAHPDFALKP 404
Query: 492 ADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARLV 525
+ + G P ++ DG F A+
Sbjct: 405 FE---TAKISAPKGMLKILPDSYNSDGFFIAKFT 435
>gi|452974522|gb|EME74342.1| 16S rRNA methyltransferase B [Bacillus sonorensis L12]
Length = 450
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 127/396 (32%), Positives = 211/396 (53%), Gaps = 28/396 (7%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
+T DL+D+D L+T++V GT++ + LD+++ K ++P ++ +LR+ Y++
Sbjct: 32 MKTNDLNDKDRGLLTELVYGTLQNKLALDYMLKPFI---KKPEKVKPWVIHLLRMSLYQM 88
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
L+ +P A + E V +AK G + VNG+LR + +P D
Sbjct: 89 EYLEKIPDRAALFEAVEIAKKRGHKGISSFVNGVLRSI------QREGVPSFAEIDDPVK 142
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
R LA SHP W+V+ WT G E A ++ + P ++R N K D L+
Sbjct: 143 R-LAVETSHPEWLVKEWTDAYGFEAAEQICRIHMIPPKQTIRVNKLK----HDRETMLHR 197
Query: 281 LKLQVPHELSLHLDEFIRVKTGLQ----NVIQAGLLKEGLCAVQDESAGLVVAVVDPQPG 336
L+ E + +E GL+ + + KEG +QDES+ LV + P+PG
Sbjct: 198 LR-----EAGIKAEEGDLSPDGLKLLKGTIATSPFFKEGDVTIQDESSMLVARALGPKPG 252
Query: 337 QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETA-KLHQVNSVIRTIHAD 395
++++D CAAPGGK+ ++ L G V ++D+++ +++++ E A +L N I T D
Sbjct: 253 ETVLDACAAPGGKSTHIGELLENTGKVVSLDLHRHKVKLIQEAAGRLGLTN--IDTRAMD 310
Query: 396 LRTFADN-STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLL 454
R A+ + D++L+DAPCSG GV+ ++ DL++++ ED L +Q +L + L
Sbjct: 311 ARKAAEAFQPEQFDRILVDAPCSGFGVIRRKPDLKYSKTPEDSARLAGIQLAILKEIAPL 370
Query: 455 VKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSID 490
+K GG LVYSTC++D ENE+ + AFL H EF D
Sbjct: 371 LKKGGTLVYSTCTMDRTENEQVMRAFLEEHDEFEAD 406
>gi|256851318|ref|ZP_05556707.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
jensenii 27-2-CHN]
gi|260660742|ref|ZP_05861657.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
jensenii 115-3-CHN]
gi|297206188|ref|ZP_06923583.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
jensenii JV-V16]
gi|256616380|gb|EEU21568.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
jensenii 27-2-CHN]
gi|260548464|gb|EEX24439.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
jensenii 115-3-CHN]
gi|297149314|gb|EFH29612.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
jensenii JV-V16]
Length = 437
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 145/441 (32%), Positives = 230/441 (52%), Gaps = 34/441 (7%)
Query: 92 EMGYVERTL--GFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPL 149
+ GY +L + +D VT +V GTI+++ +L++ + L + ++PL
Sbjct: 19 QKGYSNLSLSHALNENNFSQKDQAFVTQLVYGTIQYQLFLEYQLKDLLRTKLKEDYLKPL 78
Query: 150 LLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGN--LVNGILRKLVLLKDNNS 206
LL + Y+++ L+ +P AV+DE +LAK + + LVNGILR L+
Sbjct: 79 LL----MSVYQLIFLNRVPNRAVLDEANKLAKSFGKKNSSGYRLVNGILRSF--LRRGQV 132
Query: 207 LPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRA-NS 265
LP PK L+ S P W+V+ + K G + K++ PS + RA NS
Sbjct: 133 LPSPK------DPVHFLSIKESMPEWLVQYFIKNWGLKRTEKIL------PSLNKRAENS 180
Query: 266 RKGVTRADLVMQLNLLKLQ-VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESA 324
+ A+ +N LK Q S D V +++ K G +QDE+A
Sbjct: 181 IRIAKGANQTQIINSLKKQGYSLTESTLADNCFLVN---HSIVNTDEFKAGQITIQDEAA 237
Query: 325 GLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQ 384
LVV D Q ++D CAAPGGKT +A L QG V ++DI+K +L ++ + A+
Sbjct: 238 SLVVDCFDLQENDYVLDTCAAPGGKTSQLAENLP-QGKVISLDIHKKKLNLIKKYAERMH 296
Query: 385 VNSVIRTIHADLRTFADN-STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKIL 443
V+ + T+ D R A++ S K DK+L+DAPCSGLG+L ++ ++R+++ ++D+ L +
Sbjct: 297 VDERVETLALDARKAAEHFSDTKFDKILVDAPCSGLGLLRRKPEIRYDKTMKDVHNLARI 356
Query: 444 QDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTK 503
Q +L++A+ L+K G LVYSTCSI EENE+ + FL +HPEF I P + S +K
Sbjct: 357 QLGILNSAAQLLKKNGELVYSTCSITIEENEQVIAEFLKKHPEFEIMP---ITLSKVQSK 413
Query: 504 HGFFFSDPIKHSLDGAFAARL 524
P + DG F A++
Sbjct: 414 ESLKIL-PDTYGSDGFFIAKM 433
>gi|225868018|ref|YP_002743966.1| ribosomal RNA small subunit methyltransferase [Streptococcus equi
subsp. zooepidemicus]
gi|225701294|emb|CAW98294.1| putative ribosomal RNA small subunit methyltransferase
[Streptococcus equi subsp. zooepidemicus]
Length = 442
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 136/428 (31%), Positives = 226/428 (52%), Gaps = 33/428 (7%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
+ L D+D LVT+IV GTI + L+ L H + ++ + +L + Y++ L
Sbjct: 40 QSLSDKDKALVTEIVYGTISRKITLE---WYLAHYIEDRDRLDKWVYYLLMLSLYQLAYL 96
Query: 165 D-MPPYAVVDENVRLAKVALRP-GAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARA 222
D +P +A+V++ V LAK GA LVN +LR+L + PLP ++ R + +
Sbjct: 97 DKVPAHAIVNDAVNLAKARTHGRGADKLVNAVLRQL------TNKPLPDIKSIKR-KNKY 149
Query: 223 LATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLK 282
A YS PVW+V++ G++ A+ ++ SL SR + DL + + +K
Sbjct: 150 YAVAYSVPVWLVKKLIDQFGEKRAVAILE--------SLFVRSRASIRVTDLA-KFDEIK 200
Query: 283 LQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 342
E SL + + + G + + G +QDE++ LV +D Q + I+D
Sbjct: 201 QATGSEQSLLAETGLTKRAG--HFAASSYFINGDITIQDETSQLVAPTLDIQGQEMILDA 258
Query: 343 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT---- 398
C+APGGKT ++AS L+ G V A+D+ + +L ++NE AK V I T D R
Sbjct: 259 CSAPGGKTAHIASYLTS-GKVVALDLYEHKLALVNENAKRLGVADRIETKVLDAREVHKH 317
Query: 399 FADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPG 458
FA +S DK+L+DAPCSG+G++ ++ D+++N+ +D ++L+ +Q E+L + ++ G
Sbjct: 318 FAKDS---FDKILVDAPCSGIGLIRRKPDIKYNKEGQDFQQLQEIQLEILSSVCQTLRKG 374
Query: 459 GVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDG 518
G++ YSTC+I EEN + ++ FL RHP F +D V K G P ++ DG
Sbjct: 375 GIITYSTCTIFDEENFQVIDKFLQRHPNFE-QVTLKHAQADIV-KDGCLMITPEQYQTDG 432
Query: 519 AFAARLVR 526
F ++ R
Sbjct: 433 FFIGQVRR 440
>gi|310819442|ref|YP_003951800.1| ribosomal RNA small subunit methyltransferase b [Stigmatella
aurantiaca DW4/3-1]
gi|309392514|gb|ADO69973.1| Ribosomal RNA small subunit methyltransferase B [Stigmatella
aurantiaca DW4/3-1]
Length = 438
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 139/422 (32%), Positives = 210/422 (49%), Gaps = 20/422 (4%)
Query: 108 DDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMP 167
D RD L T++ GT R + LD+ I ++ +ME +L LRIG Y++ +P
Sbjct: 36 DARDTALATELAYGTTRRQLALDYAITRFA--DRKLDAMEDRVLAALRIGAYQLFYTRVP 93
Query: 168 PYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIY 227
A V E V+ K A VN ILRKL L PLP + A L+
Sbjct: 94 ARAAVAETVQALKDLGVGRAAGFVNAILRKLAALP---GAPLPP----EDDVAEHLSVRE 146
Query: 228 SHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPH 287
SHP W+V RW + G+E A ++V +N P +R N+ K VTR L+ Q + L+V
Sbjct: 147 SHPKWLVERWLRQFGRERAEAMLVADNQTPPVVVRTNTAK-VTREALLAQFREVGLEVQP 205
Query: 288 ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLV-VAVVDPQPGQSIVDCCAAP 346
+ + L++V EGL VQDE+A LV V P+ +++ D CAAP
Sbjct: 206 TPVSPVGIVLPSLGRLEDVYG---YSEGLWQVQDEAAQLVGVYAAIPENARTL-DVCAAP 261
Query: 347 GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVK 406
GGK + A V A+D++ +L + AK + S +R + D D + +
Sbjct: 262 GGKACHQAETHE----VVAMDLHANKLPKIVSEAKRLGLLSRLRAVAHDATKPYDEALGE 317
Query: 407 CDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTC 466
VL+DAPCSGLG L + +LR+ R D+ L LQ +L+ +V PGG+L+Y+ C
Sbjct: 318 FQAVLVDAPCSGLGTLRRHPELRYRRGEADLGRLATLQRRILENCQEVVPPGGLLIYAVC 377
Query: 467 SIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARLVR 526
+++P+E +++V+ FL HPE++ +P L + + P DG FAARL +
Sbjct: 378 TLEPQEGQDQVDMFLRSHPEWTAEPPV-LSGVKLPMNQAWLRTLPGPEGWDGFFAARLRK 436
Query: 527 AF 528
+
Sbjct: 437 LY 438
>gi|312793229|ref|YP_004026152.1| sun protein [Caldicellulosiruptor kristjanssonii 177R1B]
gi|312180369|gb|ADQ40539.1| sun protein [Caldicellulosiruptor kristjanssonii 177R1B]
Length = 410
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 127/411 (30%), Positives = 216/411 (52%), Gaps = 19/411 (4%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
F K +++D L ++V G +R++ +D+ I + + +L ILR+ YE+
Sbjct: 8 FHQKLKNEKDRALFVELVHGVLRYKNLIDYYINFVAKK----GVKDRRILNILRVATYEL 63
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
+ L+ +P YA V+E +A + P VN ILR ++ K+ L +++ D
Sbjct: 64 LFLEKIPEYATVNEACEIAS-KISPHLKAFVNAILRNIIRNKNQIEESLERIKDVDYKSY 122
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
++ S+P +++ + G E+ +K++ + N+ P S++ N++K T + + Q L
Sbjct: 123 VSIKL--SYPRFLIDYLEESYGLEKTLKILEFLNTKPPQSIKINTKK--TDVNTLTQ-EL 177
Query: 281 LKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAV--VDPQPGQS 338
K +E++ H +E I V G N+ + L KEG QD ++ LVV D + +
Sbjct: 178 EKNGFKYEINSHNNEIIHVLKG--NIKETELYKEGYFYFQDLASSLVVKFNQEDFKRAKK 235
Query: 339 IVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT 398
++D CAAPGGKT A + G V A DIN+ +L +L E +++I +D
Sbjct: 236 VIDLCAAPGGKTFNCAEVIDG--FVVACDINEHKLDVLRENILRLGFDNII-VAKSDAEV 292
Query: 399 FADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPG 458
F + K D V+ D PC+G G + K+ D++WN+ +D+E L LQ +LD A+ +K G
Sbjct: 293 FNPDFAEKFDIVIADLPCTGFGAIRKKPDIKWNKSYQDIENLHELQVRILDNAAGYLKKG 352
Query: 459 GVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFS 509
G+L YSTC++ +ENEE V FL +H +FS+ + P +F GFF +
Sbjct: 353 GLLFYSTCTLSRKENEETVLKFLDKHRDFSLVSQITIFPDEFKC-DGFFIA 402
>gi|154685990|ref|YP_001421151.1| RsmB [Bacillus amyloliquefaciens FZB42]
gi|154351841|gb|ABS73920.1| RsmB [Bacillus amyloliquefaciens FZB42]
Length = 447
Score = 189 bits (481), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 123/391 (31%), Positives = 209/391 (53%), Gaps = 18/391 (4%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
+T L D+D L+T++V GT++ + LD+++ S ++Q+LR+ Y++
Sbjct: 32 IKTNTLSDQDRGLLTELVYGTLQNKIALDYMLKPFIRKPNKVKSW---VIQLLRLSAYQM 88
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
L+ +P A + E V +AK G + VNGILR L +P +
Sbjct: 89 EYLEKIPDRAAIHEAVEIAKKRGHKGIASFVNGILRSL------QREGVPSFAEIEDPVL 142
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
R L+T SHP W+V+ W + G E A K+ + P +LR N K R ++ ++
Sbjct: 143 R-LSTETSHPEWLVKEWVEAYGFEAAEKICRIHLIPPKQTLRVNHIKS-DRETVLNEMEN 200
Query: 281 LKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIV 340
L+ L D +K + N + G ++QDES+ LV +DP+PG++++
Sbjct: 201 AGLEA-EAGDLSPDAIKLLKGSIANT---AFFQNGRVSIQDESSMLVARALDPKPGETVL 256
Query: 341 DCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 400
D CAAPGGK+ ++A + +G + ++D+++ +++++ E A+ + ++I D R
Sbjct: 257 DACAAPGGKSAHIAELMENEGSLTSLDLHRHKVKLIKEGAERLGL-TIIDAQTMDARKAG 315
Query: 401 DN-STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGG 459
+ + D+VL+DAPCSG GV+ ++ D+++ + ED L +Q +L + LVK GG
Sbjct: 316 EAFGAERFDRVLVDAPCSGFGVIRRKPDMKYTKTPEDSRRLSEIQLGILREIAPLVKKGG 375
Query: 460 VLVYSTCSIDPEENEERVEAFLLRHPEFSID 490
LVYSTC++D ENEE + AF+ HPEF D
Sbjct: 376 TLVYSTCTMDRTENEEVMHAFIQEHPEFEPD 406
>gi|168210626|ref|ZP_02636251.1| ribosomal RNA small subunit methyltransferase B [Clostridium
perfringens B str. ATCC 3626]
gi|168214218|ref|ZP_02639843.1| ribosomal RNA small subunit methyltransferase B [Clostridium
perfringens CPE str. F4969]
gi|168217028|ref|ZP_02642653.1| ribosomal RNA small subunit methyltransferase B [Clostridium
perfringens NCTC 8239]
gi|182625836|ref|ZP_02953602.1| ribosomal RNA small subunit methyltransferase B [Clostridium
perfringens D str. JGS1721]
gi|170711319|gb|EDT23501.1| ribosomal RNA small subunit methyltransferase B [Clostridium
perfringens B str. ATCC 3626]
gi|170714316|gb|EDT26498.1| ribosomal RNA small subunit methyltransferase B [Clostridium
perfringens CPE str. F4969]
gi|177908870|gb|EDT71362.1| ribosomal RNA small subunit methyltransferase B [Clostridium
perfringens D str. JGS1721]
gi|182380885|gb|EDT78364.1| ribosomal RNA small subunit methyltransferase B [Clostridium
perfringens NCTC 8239]
Length = 442
Score = 189 bits (480), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 135/436 (30%), Positives = 229/436 (52%), Gaps = 29/436 (6%)
Query: 96 VERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILR 155
+E F + D+D +D L+T++V GTI++++ +D ++ D ++ ++ ILR
Sbjct: 23 IEINKQFASNDIDPKDKGLITEVVYGTIKYKKMIDIILSSFVAD---IGKIDESVVNILR 79
Query: 156 IGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEG 214
Y++ LD +PPYA+V+E V L K P VNG+LR L++ N L
Sbjct: 80 SAIYQMKFLDRVPPYAIVNEAVNLTK-ETEPNLAKFVNGVLRNY--LRNENKNFKVGLRN 136
Query: 215 NDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADL 274
N+ AL +S WM+ + K G+E+A++++ N+ P ++R N+ K D
Sbjct: 137 NE-----ALCYDFSFDRWMIEMFIKQYGKEDALRILRGLNTVPYVTVRVNTCKA--DYDE 189
Query: 275 VMQLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQ 334
V + L + E E I +K G + + L +EGL VQDESA LV + D +
Sbjct: 190 VYE-RLEEEGYDIEEGAFSPEAIIIKKG-SAIEKNKLYQEGLITVQDESAMLVAPLFDLK 247
Query: 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETA-KLHQVNSVIRTIH 393
+ ++D C+APG K ++ + +G V A DI+ +L ++ E +L N +
Sbjct: 248 GDEQVMDLCSAPGTKATHIGELMMNKGKVVAFDIHDHKLALIKENIDRLGLTNVEVEL-- 305
Query: 394 ADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASL 453
D D+VLLD PCSGLG++ K+ +++WN++ D+ E+ +Q E+L A
Sbjct: 306 GDATKINSKYINWADRVLLDVPCSGLGIIRKKPEIKWNKKNNDLTEVVKVQKEILKNAWN 365
Query: 454 LVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSID-----PADGLVPSDFVTKHGFFF 508
++ GG LVYSTC+++ +ENEE ++ F+ R+ + ++ AD +V +D +G
Sbjct: 366 YLREGGELVYSTCTLNKKENEEVIDWFVERNSDCEVEKVFLGKADNVVYND----NGSVT 421
Query: 509 SDPIKHSLDGAFAARL 524
P K+ +DG F A+L
Sbjct: 422 ILPNKY-MDGFFIAKL 436
>gi|206901447|ref|YP_002251151.1| ribosomal RNA small subunit methyltransferase B [Dictyoglomus
thermophilum H-6-12]
gi|206740550|gb|ACI19608.1| ribosomal RNA small subunit methyltransferase B [Dictyoglomus
thermophilum H-6-12]
Length = 430
Score = 189 bits (480), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 125/425 (29%), Positives = 227/425 (53%), Gaps = 32/425 (7%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD 165
+L ++ +T++V G RW+ LD++ + S +LL+++ Y +
Sbjct: 33 NLSLKEKHFITELVYGVTRWKTTLDYIWSRFVKRD-NLSLFGRILLRLVAYHIYFLKDTI 91
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P V+E V +AK + P L+N + R++V K+ N+L L + + R
Sbjct: 92 LP--IAVNEIVEIAKRKV-PKEAKLINAVSRRMV--KERNNLDLNLIPFHIR-------- 138
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
Y+ P ++ W Y+G+ EA+K++ W N + ++R N+ K ++ DL +L + +
Sbjct: 139 -YAIPEFIFEEWQDYIGKGEAVKILGWLNKAHNIAIRVNTLK-ISVEDLKEKLK--ERGI 194
Query: 286 PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAA 345
+ + + + ++ G + ++ L G +Q E++ L +++P+PG ++D C+A
Sbjct: 195 KFKDGNLVTQALLIEDGF-DFEKSDLFHNGYFVIQSEASMLPALILNPEPGSRVIDLCSA 253
Query: 346 PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTV 405
PG K+ ++A ++ +G + ++DINK R++++ E AK + S+I T+ D+ D+
Sbjct: 254 PGLKSTHLAELMNNKGKIVSVDINKNRVKLVEENAKRLGI-SIIETLAEDVLNLPDSLNG 312
Query: 406 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465
D+VLLDAPCSGLGV+S + +++W + ED+ +L +Q ++L+ A L+K GG +VYST
Sbjct: 313 TFDRVLLDAPCSGLGVISHKPEIKWRLKREDIYKLSEMQIKMLERAGKLLKKGGRMVYST 372
Query: 466 CSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKH----GFFFSDPIKHSLDGAFA 521
C+I ENE V FL R+PEF + DF K G P K+ DG F
Sbjct: 373 CTITWHENENVVLYFLERNPEFKL--------IDFFYKGEKFPGIMRVIPYKYKTDGFFI 424
Query: 522 ARLVR 526
+ + R
Sbjct: 425 SLIGR 429
>gi|302035777|ref|YP_003796099.1| ribosomal RNA small subunit methyltransferase B [Candidatus
Nitrospira defluvii]
gi|300603841|emb|CBK40173.1| Ribosomal RNA small subunit methyltransferase B [Candidatus
Nitrospira defluvii]
Length = 449
Score = 189 bits (480), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 143/441 (32%), Positives = 219/441 (49%), Gaps = 39/441 (8%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
LD RD + ++V G +R+R LD + LL ++ + + L+ ILR+G Y+++ LD
Sbjct: 27 LDLRDRAFMVELVRGVLRYRATLDWRLGLL--SDRRITKLPTLVQTILRLGAYQLLYLDR 84
Query: 166 MPPYAVVDENVRLAKVALRP---GAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARA 222
+P A V+E+V++ K R VN +LR L+ P P A
Sbjct: 85 VPDSAAVNESVQMTKQQSRRLGRDWSGFVNAVLRALL------RSPEPAWPDAGSDPVVA 138
Query: 223 LATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLK 282
LA YS P W+V RW + LG E A L + P +LR N+ + +R+ L+ L +
Sbjct: 139 LAVRYSCPAWLVERWCRRLGAERAEVLCRASVEAPPLTLRVNTLR-TSRSALLADLAAAQ 197
Query: 283 LQV-PHELSLHLDEFIRVKTGLQ-----NVIQAGLLKEGLCAVQDESAGLVVAVVDPQPG 336
++ P +S + GLQ VI EG V+DE+ L+ ++D QPG
Sbjct: 198 VEANPTSVS---------EVGLQLSRSCAVIDLPGYAEGRFYVEDEAGQLIPLLLDVQPG 248
Query: 337 QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADL 396
Q +D CAAPGGK ++A+ + QG + A+D RL ++ + V ++ + DL
Sbjct: 249 QRALDACAAPGGKATHLAALMENQGEIVAVDRVSSRLDLVMANCRRLGVK-ILTPLAGDL 307
Query: 397 RTFADNSTVK-------CDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLD 449
R D++LLDAPCSGLGVL + + +W + E + + + +Q ELL
Sbjct: 308 RALVGAEIASHPMLSRPFDRILLDAPCSGLGVLRRHPEGKWYKTPESIAQHRRMQVELLA 367
Query: 450 AASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPS---DFVTKHGF 506
S L++PGGVLVYS CSI+PEE E ++ F H +F + +P FVT G
Sbjct: 368 VTSRLLRPGGVLVYSACSIEPEETESIIDEFCQAHHQFQRESIAPWLPPAGLPFVTPRGD 427
Query: 507 FFSDPIKHSLDGAFAARLVRA 527
+ +D FAAR+ R+
Sbjct: 428 LSTMANSKRMDLFFAARVRRS 448
>gi|422346411|ref|ZP_16427325.1| ribosomal RNA small subunit methyltransferase B [Clostridium
perfringens WAL-14572]
gi|373225956|gb|EHP48283.1| ribosomal RNA small subunit methyltransferase B [Clostridium
perfringens WAL-14572]
Length = 442
Score = 189 bits (480), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 135/436 (30%), Positives = 229/436 (52%), Gaps = 29/436 (6%)
Query: 96 VERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILR 155
+E F + D+D +D L+T++V GTI++++ +D ++ D ++ ++ ILR
Sbjct: 23 IEINKQFASNDIDPKDKGLITEVVYGTIKYKKMIDIILSNFVAD---IGKIDESVVNILR 79
Query: 156 IGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEG 214
Y++ LD +PPYA+V+E V L K P VNG+LR L++ N L
Sbjct: 80 SAIYQMKFLDRVPPYAIVNEAVNLTK-ETEPNLAKFVNGVLRNY--LRNENKNFKVGLRN 136
Query: 215 NDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADL 274
N+ AL +S WM+ + K G+E+A++++ N+ P ++R N+ K D
Sbjct: 137 NE-----ALCYDFSFDRWMIEMFIKQYGKEDALRILRGLNTVPYVTVRVNTCKA--DYDE 189
Query: 275 VMQLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQ 334
V + L + E E I +K G + + L +EGL VQDESA LV + D +
Sbjct: 190 VYE-RLEEEGYDIEEGAFSPEAIIIKKG-SAIEKNKLYQEGLITVQDESAMLVAPLFDLK 247
Query: 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETA-KLHQVNSVIRTIH 393
+ ++D C+APG K ++ + +G V A DI+ +L ++ E +L N +
Sbjct: 248 GDEQVMDLCSAPGTKATHIGELMMNKGKVVAFDIHDHKLALIKENIDRLGLTNVEVEL-- 305
Query: 394 ADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASL 453
D D+VLLD PCSGLG++ K+ +++WN++ D+ E+ +Q E+L A
Sbjct: 306 GDATKINSKYINWADRVLLDVPCSGLGIIRKKPEIKWNKKNNDLTEVVKVQKEILKNAWN 365
Query: 454 LVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSID-----PADGLVPSDFVTKHGFFF 508
++ GG LVYSTC+++ +ENEE ++ F+ R+ + ++ AD +V +D +G
Sbjct: 366 YLREGGELVYSTCTLNKKENEEVIDWFVERNSDCEVEKVFLGKADNVVYND----NGSVT 421
Query: 509 SDPIKHSLDGAFAARL 524
P K+ +DG F A+L
Sbjct: 422 ILPNKY-MDGFFIAKL 436
>gi|423401293|ref|ZP_17378466.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG2X1-2]
gi|423457952|ref|ZP_17434749.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG5X2-1]
gi|423478003|ref|ZP_17454718.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG6X1-1]
gi|401148336|gb|EJQ55829.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG5X2-1]
gi|401654283|gb|EJS71826.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG2X1-2]
gi|402428165|gb|EJV60262.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG6X1-1]
Length = 444
Score = 189 bits (480), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 128/388 (32%), Positives = 212/388 (54%), Gaps = 24/388 (6%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+D +D+ L+T+IV GTI+ R LD+ + +E + +LR+ Y+++ LD
Sbjct: 36 IDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLK-----KKVEAWVRVLLRLSLYQMIYLDR 90
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKL-EGNDRAQARALA 224
+P A + E V +AK G +VNG+LR + +P + E D + A+A
Sbjct: 91 VPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSI------QREGVPSVDEIKDPIERLAIA 144
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQ 284
T SHP+W+V+ W G E A K+ N P + R N K +T + + L ++
Sbjct: 145 T--SHPMWLVQDWASEYGLETAEKMCEVNMLPPVPTARVNVDK-ITVEEAIELLAGEGIE 201
Query: 285 VPH-ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCC 343
+LS ++ I+++ G NV K+G ++QDES+ LV ++P G ++D C
Sbjct: 202 AKRGDLS---EDAIQIERG--NVAHTDAFKKGFLSIQDESSMLVARALEPNEGDEVLDSC 256
Query: 344 AAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN- 402
AAPGGKT ++A L G G V ++D++ ++R++ + A+ + +V T D R ++
Sbjct: 257 AAPGGKTTHIAERLKGTGQVMSLDLHAHKVRLIKQQAERLGLENV-ETKALDARKVQEHF 315
Query: 403 STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLV 462
+ DK+L+DAPCSG GV+ ++ D++ + D E L +Q +L+ + L+K GG LV
Sbjct: 316 ANETFDKILVDAPCSGFGVIRRKPDIKLGKNKGDSERLSTIQLAILEKIAPLLKQGGRLV 375
Query: 463 YSTCSIDPEENEERVEAFLLRHPEFSID 490
YSTC+I+ ENE+ ++ FL HPEF D
Sbjct: 376 YSTCTIEKIENEQVIKQFLQEHPEFEWD 403
>gi|395238247|ref|ZP_10416185.1| Ribosomal RNA small subunit methyltransferase B [Lactobacillus
gigeriorum CRBIP 24.85]
gi|394477951|emb|CCI86162.1| Ribosomal RNA small subunit methyltransferase B [Lactobacillus
gigeriorum CRBIP 24.85]
Length = 443
Score = 189 bits (479), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 138/425 (32%), Positives = 229/425 (53%), Gaps = 30/425 (7%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L+ D L T IV GTI+++ L++ + L + T +EPLLL + Y+++ LD
Sbjct: 38 LNQTDTNLATKIVYGTIQYKILLEYQLKQLLKSKLTEKYLEPLLL----MSLYQLIFLDK 93
Query: 166 MPPYAVVDENVRLAKVALRPGAG--NLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARAL 223
+P AV+DE +LAK + + LVNGILR L LP+++ L
Sbjct: 94 IPANAVLDEANKLAKAYGKSHSNGYKLVNGILRNFT----RKGLVLPEVK--QVGLVSYL 147
Query: 224 ATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKL 283
+ S P W+V+ + + G++ A ++ N + SLR ++ R ++ +LN
Sbjct: 148 SIKDSMPEWLVQYFIENWGEQRAETILASFNENAKNSLRISNL--ADRDKVLAELNEQGY 205
Query: 284 QVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCC 343
+ P + +L + I G + + L +G +QDE+A LV V D + ++D C
Sbjct: 206 E-PVDSNLATNSVIVAHGG---IAENSLFADGKVTIQDEAASLVADVFDLSGDEQVLDAC 261
Query: 344 AAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT----F 399
+APGGKT+ +A LS G V A+DI+ +L ++ + A+ V S I+TI D + F
Sbjct: 262 SAPGGKTIQIAERLS-TGSVTALDIHPKKLNLVKQNAERMGVASRIKTIALDAKKTNTFF 320
Query: 400 ADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGG 459
+D + D++L+DAPCSGLG+L ++ ++R+ + +D+E L+ +Q +LD+ S ++ G
Sbjct: 321 SDQ---QFDRILVDAPCSGLGLLRRKPEIRYGKSQKDLENLQQIQLAILDSVSKVLAKKG 377
Query: 460 VLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGA 519
LVYSTC+I EE+E+ +E FL HP+F + P + +P + T+ G P DG
Sbjct: 378 ELVYSTCTITHEEDEDVIEQFLADHPQFELLPFE--LP-NISTETGMLKILPDSFGSDGF 434
Query: 520 FAARL 524
F A+L
Sbjct: 435 FIAKL 439
>gi|418633997|ref|ZP_13196395.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis VCU129]
gi|420177392|ref|ZP_14683728.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIHLM057]
gi|420179235|ref|ZP_14685530.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIHLM053]
gi|420189611|ref|ZP_14695579.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIHLM037]
gi|420204139|ref|ZP_14709699.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIHLM015]
gi|374837989|gb|EHS01546.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis VCU129]
gi|394247776|gb|EJD93018.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIHLM057]
gi|394254041|gb|EJD99023.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIHLM053]
gi|394260946|gb|EJE05748.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIHLM037]
gi|394274153|gb|EJE18578.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIHLM015]
Length = 435
Score = 189 bits (479), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 130/424 (30%), Positives = 221/424 (52%), Gaps = 46/424 (10%)
Query: 104 TKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTF--SSMEPLLLQILRIGFYEI 161
T +++ D L T++V GT++ + LD+L+ K F + ++ + Q+L + Y+
Sbjct: 33 TNNINTVDKNLFTELVYGTLKRKYTLDYLL-------KPFIKTKIKSWVRQLLWMSLYQY 85
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
+ LD +P +A++ E V +AK GN+VNGILR ++ LP E D +
Sbjct: 86 LYLDKIPNHAIIHEAVDIAKKRGGYHTGNIVNGILRTVM------RTELPSFEDIDDTKK 139
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
R +A YS P W+V W + G E+ K+ + ++RAN +G + ++ +L
Sbjct: 140 R-IAIQYSLPKWIVDHWVTHFGIEKTEKIAQSFLEPVATTVRANISRGSIDS-IISKLEQ 197
Query: 281 LKLQVPHE----LSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPG 336
QV + LH+ +GL V+ + KEG ++QD+S+ +V V++
Sbjct: 198 EGYQVKKDDMLPFCLHI-------SGLP-VVNSNAFKEGYISIQDKSSMMVAYVMNLGRD 249
Query: 337 QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADL 396
++D C+APGGK +MA LS +G V A DI++ ++ ++ + K ++N+ I+ D
Sbjct: 250 DKVLDACSAPGGKACHMAEILSPEGHVDATDIHEHKINLIKQNIKKLKLNN-IKAFQHDA 308
Query: 397 RTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVK 456
D DK+L+DAPCSGLGVL + ++++++ ++ L LQ ++L+ +K
Sbjct: 309 TEVYDKM---YDKILVDAPCSGLGVLRHKPEIKYSQSQNSIKSLVELQLQILENVKDNIK 365
Query: 457 PGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADG-----------LVPSDFVTKHG 505
PGG +VYSTC+I+ ENE + FL RH +F +P ++P DF G
Sbjct: 366 PGGTIVYSTCTIEQMENENVIYTFLKRHKDFEFEPIQNPVTGEQVKTLQILPQDF-NSDG 424
Query: 506 FFFS 509
FF S
Sbjct: 425 FFIS 428
>gi|312127904|ref|YP_003992778.1| sun protein [Caldicellulosiruptor hydrothermalis 108]
gi|311777923|gb|ADQ07409.1| sun protein [Caldicellulosiruptor hydrothermalis 108]
Length = 410
Score = 189 bits (479), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 128/411 (31%), Positives = 215/411 (52%), Gaps = 19/411 (4%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
F K +++D L ++V G +R++ +++ I + + +L ILR+ YE+
Sbjct: 8 FHQKLKNEKDRALFVELVHGVLRYKSLIEYYINFVAKK----GVKDKRILNILRVATYEL 63
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
+ L+ +P YA V+E +A + P VN ILR ++ K+ L +++ D
Sbjct: 64 LFLEKIPEYATVNEACEIAS-KISPHLKAFVNAILRNIIRNKNQIEESLERIKDVDYKSY 122
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
++ S+P +++ + G E+ +K++ + N+ P S++ N++K T + Q L
Sbjct: 123 ISIKL--SYPRFLIDYLEESYGLEKTLKILEFLNTKPPQSIKINTKK--TDVSTLTQ-EL 177
Query: 281 LKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAV--VDPQPGQS 338
K +E++ H +E I V G N+ + L KEG QD ++ LVV D + +
Sbjct: 178 EKNGFKYEINSHNNEIIHVLKG--NIKETELYKEGYFYFQDLASSLVVKFNQEDFKRAKK 235
Query: 339 IVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT 398
++D CAAPGGKT A + G V A DIN+ +L IL E +++I +D
Sbjct: 236 VIDLCAAPGGKTFNCAEVIDG--FVVACDINEHKLDILRENILRLGFDNII-VAKSDAEV 292
Query: 399 FADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPG 458
F + K D V+ D PC+G G + K+ D++WN+ +D+E L LQ +LD A+ +K G
Sbjct: 293 FNPDFAEKFDIVIADLPCTGFGAIRKKPDIKWNKSYQDVENLHELQVRILDNAAGYLKKG 352
Query: 459 GVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFS 509
G+L YSTC++ +ENEE V FL +H +FS+ + P +F GFF S
Sbjct: 353 GLLFYSTCTLSRKENEETVLKFLDKHRDFSLVSQITIFPDEF-NCDGFFIS 402
>gi|418613993|ref|ZP_13176983.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis VCU118]
gi|374821862|gb|EHR85903.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis VCU118]
Length = 435
Score = 189 bits (479), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 130/424 (30%), Positives = 221/424 (52%), Gaps = 46/424 (10%)
Query: 104 TKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTF--SSMEPLLLQILRIGFYEI 161
T +++ D L T++V GT++ + LD+L+ K F + ++ + Q+L + Y+
Sbjct: 33 TNNINTVDKNLFTELVYGTLKRKYTLDYLL-------KPFIKTKIKSWVRQLLWMSLYQY 85
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
+ LD +P +A++ E V +AK GN+VNGILR ++ LP E D +
Sbjct: 86 LYLDKIPNHAIIHEAVDIAKKRGGYHTGNIVNGILRTVM------RTELPSFEDIDDTKK 139
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
R +A YS P W+V W + G E+ K+ + ++RAN +G + ++ +L
Sbjct: 140 R-IAIQYSLPKWIVDHWVTHFGIEKTEKIAQSFLEPVATTVRANISRGSIDS-IISKLEQ 197
Query: 281 LKLQVPHE----LSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPG 336
QV + LH+ +GL V+ + KEG ++QD+S+ +V V++
Sbjct: 198 EGYQVKKDDMLPFCLHI-------SGLP-VVNSNAFKEGYISIQDKSSMMVAYVMNLGRD 249
Query: 337 QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADL 396
++D C+APGGK +MA LS +G V A DI++ ++ ++ + K ++N+ I+ D
Sbjct: 250 DKVLDACSAPGGKACHMAEILSPEGHVDATDIHEHKINLIKQNIKKLKLNN-IKAFQHDA 308
Query: 397 RTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVK 456
D DK+L+DAPCSGLGVL + ++++++ ++ L LQ ++L+ +K
Sbjct: 309 TEVYDKM---YDKILVDAPCSGLGVLRHKPEIKYSQSQNSIKSLVELQLQILENVKDNIK 365
Query: 457 PGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADG-----------LVPSDFVTKHG 505
PGG +VYSTC+I+ ENE + FL RH +F +P ++P DF G
Sbjct: 366 PGGTIVYSTCTIEQMENENVIYTFLKRHKDFEFEPIQNPVTGEQVKTLQILPQDF-NSDG 424
Query: 506 FFFS 509
FF S
Sbjct: 425 FFIS 428
>gi|336395246|ref|ZP_08576645.1| 16S rRNA methyltransferase B [Lactobacillus farciminis KCTC 3681]
Length = 440
Score = 189 bits (479), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 134/431 (31%), Positives = 218/431 (50%), Gaps = 29/431 (6%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
+ D+ D D RL+T+IV G I+ + L++ + ++ L +L+ Y++
Sbjct: 31 LKNSDMSDADKRLMTNIVYGVIQHKYVLEYQL----EPYLKDKKLDLWLDLLLQTAIYQL 86
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
LD +P +AV++E+ +AK GAGNLVN +LR ++ G D
Sbjct: 87 SYLDKIPEHAVLNESTEIAKQKANRGAGNLVNAVLRNF------QRHGAREMSGKD--SV 138
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
L+ YS P W+V+ + G ++ +++ N S+R N+ K T DL L
Sbjct: 139 YDLSKFYSVPRWLVQLFIDQQGLDKTKEILKSINQPSHVSIRVNTNK-TTVKDLQKTLQS 197
Query: 281 LKLQV-PHELSLHLDEFIRVKTGL----QNVIQAGLLKEGLCAVQDESAGLVVAVVDPQP 335
V P ++S GL N++ ++GL +QDES+ LV +D P
Sbjct: 198 KGFDVKPSKIS---------SVGLICESGNLVNTDEFRDGLYTIQDESSMLVAPALDLLP 248
Query: 336 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHAD 395
++D CAAPGGKT ++AS + G V A+DI+K + +++ + ++ + +I T D
Sbjct: 249 DSRVLDACAAPGGKTTHIASYIK-DGEVTALDIHKHKTKLIRDNSQRMGYSDIISTGAID 307
Query: 396 LRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLV 455
R D D++L+DAPCSGLG++ ++ +LR+ R+ ED+ L+ +Q ++LD+ L+
Sbjct: 308 ARKAKDVLNTTFDRILVDAPCSGLGLIRRKPELRYFRQEEDLMNLQRVQLQILDSMVDLL 367
Query: 456 KPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHS 515
+ G LV+STC+ D EENE V+ FL H F ++P D K G P +
Sbjct: 368 EVNGKLVFSTCTFDDEENEAVVKKFLADHKNFELEPVKHEAVMDKSVKDGMLKVLPSDYF 427
Query: 516 LDGAFAARLVR 526
DG F A VR
Sbjct: 428 TDGFFIATFVR 438
>gi|422874661|ref|ZP_16921146.1| 16S rRNA methyltransferase B [Clostridium perfringens F262]
gi|380304302|gb|EIA16591.1| 16S rRNA methyltransferase B [Clostridium perfringens F262]
Length = 442
Score = 189 bits (479), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 135/436 (30%), Positives = 229/436 (52%), Gaps = 29/436 (6%)
Query: 96 VERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILR 155
+E F + D+D +D L+T++V GTI++++ +D ++ D ++ ++ ILR
Sbjct: 23 IEINKQFASNDIDPKDKGLITEVVYGTIKYKKMIDIILSSFVAD---IGKIDESVVNILR 79
Query: 156 IGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEG 214
Y++ LD +PPYA+V+E V L K P VNG+LR L++ N L
Sbjct: 80 SAIYQMKFLDRVPPYAIVNEAVNLTK-ETEPNLAKFVNGVLRNY--LRNENKNFKVGLRN 136
Query: 215 NDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADL 274
N+ AL +S WM+ + K G+E+A++++ N+ P ++R N+ K D
Sbjct: 137 NE-----ALCYDFSFDRWMIEMFIKQYGKEDALRILRGLNTVPYVTVRVNTCKA--DYDE 189
Query: 275 VMQLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQ 334
V + L + E E I +K G + + L +EGL VQDESA LV + D +
Sbjct: 190 VYE-RLEEEGYDIEEGAFSPEAIIIKKG-SAIERNKLYQEGLITVQDESAMLVAPLFDLK 247
Query: 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETA-KLHQVNSVIRTIH 393
+ ++D C+APG K ++ + +G V A DI+ +L ++ E +L N +
Sbjct: 248 GDEQVMDLCSAPGTKATHIGELMMNKGKVVAFDIHDHKLALIKENIDRLGLTNVEVEL-- 305
Query: 394 ADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASL 453
D D+VLLD PCSGLG++ K+ +++WN++ D+ E+ +Q E+L A
Sbjct: 306 GDATKINSKYINWADRVLLDVPCSGLGIIRKKPEIKWNKKNNDLTEVVKVQKEILKNAWN 365
Query: 454 LVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSID-----PADGLVPSDFVTKHGFFF 508
++ GG LVYSTC+++ +ENEE ++ F+ R+ + ++ AD +V +D +G
Sbjct: 366 YLREGGELVYSTCTLNKKENEEVIDWFVERNSDCEVEKVFLGKADNVVYND----NGSVT 421
Query: 509 SDPIKHSLDGAFAARL 524
P K+ +DG F A+L
Sbjct: 422 ILPNKY-MDGFFIAKL 436
>gi|110800441|ref|YP_696427.1| ribosomal RNA small subunit methyltransferase B [Clostridium
perfringens ATCC 13124]
gi|110675088|gb|ABG84075.1| ribosomal RNA small subunit methyltransferase B [Clostridium
perfringens ATCC 13124]
Length = 442
Score = 189 bits (479), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 135/436 (30%), Positives = 229/436 (52%), Gaps = 29/436 (6%)
Query: 96 VERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILR 155
+E F + D+D +D L+T++V GTI++++ +D ++ D ++ ++ ILR
Sbjct: 23 IEINKQFASNDIDPKDKGLITEVVYGTIKYKKMIDIILSSFVAD---IGKIDESVVNILR 79
Query: 156 IGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEG 214
Y++ LD +PPYA+V+E V L K P VNG+LR L++ N L
Sbjct: 80 SAIYQMKFLDRVPPYAIVNEAVNLTK-ETEPNLAKFVNGVLRNY--LRNENKNFKVGLRN 136
Query: 215 NDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADL 274
N+ AL +S WM+ + K G+E+A++++ N+ P ++R N+ K D
Sbjct: 137 NE-----ALCYDFSFDRWMIEMFIKQYGKEDALRILRGLNTVPYVTVRVNTCKA--DYDE 189
Query: 275 VMQLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQ 334
V + L + E E I +K G + + L +EGL VQDESA LV + D +
Sbjct: 190 VYE-RLEEEGYDIEEGAFSPEAIIIKKG-SAIEKNKLYQEGLITVQDESAMLVAPLFDLR 247
Query: 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETA-KLHQVNSVIRTIH 393
+ ++D C+APG K ++ + +G V A DI+ +L ++ E +L N +
Sbjct: 248 GDEQVMDLCSAPGTKATHIGELMMNKGKVVAFDIHDHKLALIKENIDRLGLTNVEVEL-- 305
Query: 394 ADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASL 453
D D+VLLD PCSGLG++ K+ +++WN++ D+ E+ +Q E+L A
Sbjct: 306 GDATKINSKYINWADRVLLDVPCSGLGIIRKKPEIKWNKKNNDLTEVVKVQKEILKNAWN 365
Query: 454 LVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSID-----PADGLVPSDFVTKHGFFF 508
++ GG LVYSTC+++ +ENEE ++ F+ R+ + ++ AD +V +D +G
Sbjct: 366 YLREGGELVYSTCTLNKKENEEVIDWFVERNSDCEVEKVFLGKADNVVYND----NGSVT 421
Query: 509 SDPIKHSLDGAFAARL 524
P K+ +DG F A+L
Sbjct: 422 ILPNKY-MDGFFIAKL 436
>gi|229031495|ref|ZP_04187495.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
AH1271]
gi|228729784|gb|EEL80764.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
AH1271]
Length = 402
Score = 189 bits (479), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 127/380 (33%), Positives = 207/380 (54%), Gaps = 22/380 (5%)
Query: 114 LVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVV 172
++T+IV GTI+ R LD+ + +E + +LR+ Y+++ LD +P A +
Sbjct: 1 MLTEIVYGTIQRRDTLDYYLQPFLK-----KKVEAWVRVLLRLSLYQMIYLDRVPERAAI 55
Query: 173 DENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVW 232
E V +AK G +VNG+LR + +P E D + A+AT SHP+W
Sbjct: 56 HEAVEIAKRRGHKGIAGMVNGVLRSI----QREGVPSVD-EIKDPVERLAIAT--SHPMW 108
Query: 233 MVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPH-ELSL 291
+V+ W G E A K+ N P + R N K +T + + L ++ H +LS
Sbjct: 109 LVQDWASEYGLETAEKMCEVNMLPPVPTARVNVDK-ITVDEAIELLASEGIEAKHGDLS- 166
Query: 292 HLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTL 351
++ I+++ G NV K+G ++QDES+ LV +DP G ++D CAAPGGKT
Sbjct: 167 --EDAIQIERG--NVAHTDAFKKGFLSIQDESSMLVARALDPNEGDVVLDSCAAPGGKTT 222
Query: 352 YMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVKCDKV 410
++A L G G V ++D++ ++R++ + A+ + +V T D R ++ + DK+
Sbjct: 223 HIAERLKGTGQVMSLDLHAHKVRLIKQQAERLGLENV-ETKALDARKVQEHFANETFDKI 281
Query: 411 LLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDP 470
L+DAPCSG GV+ ++ D++ + D E L +Q +L+ + L+K GG LVYSTC+I+
Sbjct: 282 LVDAPCSGFGVIRRKPDIKLGKNKGDSERLSTIQLAILEKIAPLLKQGGRLVYSTCTIEK 341
Query: 471 EENEERVEAFLLRHPEFSID 490
ENE+ ++ FL HPEF D
Sbjct: 342 IENEQVIKQFLQEHPEFEWD 361
>gi|94266030|ref|ZP_01289751.1| Fmu, rRNA SAM-dependent methyltransferase [delta proteobacterium
MLMS-1]
gi|93453425|gb|EAT03847.1| Fmu, rRNA SAM-dependent methyltransferase [delta proteobacterium
MLMS-1]
Length = 487
Score = 188 bits (478), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 144/454 (31%), Positives = 215/454 (47%), Gaps = 44/454 (9%)
Query: 108 DDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-M 166
D RD RL+ +V G +RWR LD ++ + + M+PL L LR+G +++ L+ +
Sbjct: 40 DGRDRRLLEALVYGVLRWRGLLDQVVA--GYARHPLAKMKPLTLAALRLGILQLLILERL 97
Query: 167 PPYAVVDENVRLAKVALRP-GAGNLVNGILRK-------------LVLLKDNNSLPLPKL 212
P A ++E ++ + A +P VN +LRK L L + P +
Sbjct: 98 PASAAINETIKALRAARQPRWLTGFVNAVLRKAAADIERLGRQQYLAGLVAEGTAPTGQY 157
Query: 213 EGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRA 272
D A+A SHP W+ +RW + G E +L NN P LR N + +T +
Sbjct: 158 ASPD-PLPMAVAAWLSHPPWLRQRWEQRYGLELCRELCHINNCLPPLVLRVNLHR-LTAS 215
Query: 273 DLVMQLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVD 332
+L+ QL K + + + + G V G AVQDE+A LV ++
Sbjct: 216 ELLAQLQ--KAGIAATAGDYAPAAVVLPPGSGRVEDLPGYALGWFAVQDEAAQLVTMLLA 273
Query: 333 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTI 392
+D CA GGKT ++A L + + A++ R +L TA LH++ R I
Sbjct: 274 GAGPGHYLDACAGLGGKTAHLAELLPPEATITALEPQSRRALLL--TANLHRLGVTARLI 331
Query: 393 HADLRTFADNSTVKC-----DK---------------VLLDAPCSGLGVLSKRADLRWNR 432
+L + ++ DK +L+DAPCSGLGV+ + D+RWNR
Sbjct: 332 QGELAAHLPAAELEAAGASHDKKGDTIPSPFLGFYRGILVDAPCSGLGVIRRHPDIRWNR 391
Query: 433 RLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSID-P 491
R +++ + Q ELL A+ L++PGGVLVY CS +PEENEE ++ L R PE + P
Sbjct: 392 RAAELKNYQRRQLELLSTAAELLQPGGVLVYVVCSFEPEENEEVIQLLLKRRPELRLSAP 451
Query: 492 ADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARLV 525
A L + G FF LDG FAARLV
Sbjct: 452 APYLPVAARQLVRGDFFRSLPSDGLDGFFAARLV 485
>gi|18310723|ref|NP_562657.1| RNA-binding Sun protein [Clostridium perfringens str. 13]
gi|18145404|dbj|BAB81447.1| probable RNA-binding Sun protein [Clostridium perfringens str. 13]
Length = 442
Score = 188 bits (478), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 133/436 (30%), Positives = 229/436 (52%), Gaps = 29/436 (6%)
Query: 96 VERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILR 155
+E F + D+D +D L+T++V GTI++++ +D ++ D ++ ++ ILR
Sbjct: 23 IEINKQFASNDIDPKDKGLITEVVYGTIKYKKMIDIILSSFVAD---IGKIDESVVNILR 79
Query: 156 IGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEG 214
Y++ LD +PPYA+V+E V L K P +NG+LR L++ N L
Sbjct: 80 SAIYQMKFLDRVPPYAIVNEAVNLTK-ETEPNLAKFINGVLRNY--LRNENKNFKVGLRN 136
Query: 215 NDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADL 274
N+ AL +S WM+ + K G+E+A++++ N+ P ++R N+ K D
Sbjct: 137 NE-----ALCYDFSFDRWMIEMFIKQYGKEDALRILRGLNTVPYVTVRVNTCKA--DYDE 189
Query: 275 VMQLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQ 334
V + L + E E I +K G + + L +EGL VQDESA LV + D +
Sbjct: 190 VYE-RLEEEGYDIEEGAFSPEAIIIKKG-SAIEKNKLYQEGLITVQDESAMLVAPLFDLK 247
Query: 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETA-KLHQVNSVIRTIH 393
+ ++D C+APG K ++ + +G V A DI+ +L ++ E +L N +
Sbjct: 248 GDEQVMDLCSAPGTKATHIGELMMNKGKVVAFDIHDHKLALIKENIDRLGLTNVEVEL-- 305
Query: 394 ADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASL 453
D D++LLD PCSGLG++ K+ +++WN++ D+ E+ +Q E+L A
Sbjct: 306 GDATKINSKYINWADRILLDVPCSGLGIIRKKPEIKWNKKNNDLTEVVKVQKEILKNAWN 365
Query: 454 LVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSID-----PADGLVPSDFVTKHGFFF 508
++ GG LVYSTC+++ +ENEE ++ F+ R+ + ++ AD +V +D +G
Sbjct: 366 YLREGGELVYSTCTLNKKENEEVIDWFVERNSDCEVEKVFLGKADNVVYND----NGSVT 421
Query: 509 SDPIKHSLDGAFAARL 524
P K+ +DG F A+L
Sbjct: 422 ILPNKY-MDGFFIAKL 436
>gi|422844007|ref|ZP_16890717.1| RNA methyltransferase Sun [Lactobacillus delbrueckii subsp. lactis
DSM 20072]
gi|325685886|gb|EGD27952.1| RNA methyltransferase Sun [Lactobacillus delbrueckii subsp. lactis
DSM 20072]
Length = 438
Score = 188 bits (478), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 138/417 (33%), Positives = 214/417 (51%), Gaps = 27/417 (6%)
Query: 113 RLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAV 171
RL T++V GTI+++ YL++ + L ++PLLL + Y+I LD +P AV
Sbjct: 42 RLATNLVYGTIQYQLYLEYQLKDLVKARLREPYIKPLLL----MSAYQIFFLDKVPNRAV 97
Query: 172 VDENVRLAKVALRPGAGN--LVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSH 229
+DE +LAK RP + LVNGIL L L+ LP ++ L+ S
Sbjct: 98 LDEANKLAKAYGRPKSSGYRLVNGILHSL--LRRGEVLP-------EKDAPDYLSVKCSM 148
Query: 230 PVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHEL 289
P+W+ + G+ A K+M NS +R ++ R +V L+ P E
Sbjct: 149 PLWLSDYFVANWGKSRAEKIMASFNSKAKNEIRISALADEKR--VVRDLDRAHF-APQES 205
Query: 290 SLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGK 349
L + + G ++ K+G VQDE+A LV D + + +D C+APGGK
Sbjct: 206 PLASRSYALSRGG---IVMTDFFKDGEVTVQDEAASLVAEAFDFKGNEQALDACSAPGGK 262
Query: 350 TLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVKCD 408
T+ +A L G V A+DI++ +LR++ E A +V ++ D R + S + D
Sbjct: 263 TIQIAEQLP-DGQVTALDIHEKKLRLVKENAARMRVADRVKVKTLDARKAREYFSGQEFD 321
Query: 409 KVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSI 468
K+L+DAPCSGLG+L ++ ++R+ + ED+ L +Q ++L+ S L+K GG LVYSTCSI
Sbjct: 322 KILIDAPCSGLGLLRRKPEIRYTKTAEDISHLAEIQLDILNEVSGLLKKGGELVYSTCSI 381
Query: 469 DPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARLV 525
EENEE V FL HP+F++ P + + G P ++ DG F A+
Sbjct: 382 SVEENEENVRKFLAAHPDFALKPFE---TAKISAPKGMLKILPDSYNSDGFFIAKFT 435
>gi|220931836|ref|YP_002508744.1| sun protein [Halothermothrix orenii H 168]
gi|219993146|gb|ACL69749.1| sun protein [Halothermothrix orenii H 168]
Length = 440
Score = 188 bits (478), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 123/389 (31%), Positives = 202/389 (51%), Gaps = 21/389 (5%)
Query: 108 DDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-M 166
D RD +T++V G +R ++ LD++ L C ++ M+ +L LR+ Y+I D +
Sbjct: 34 DKRDRAFITELVYGVLRQKKRLDYM--LSCFSKRPLRKMDNEVLSALRVALYQIEYTDSV 91
Query: 167 PPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQ--ARALA 224
P A V E V K GA NG+LR + KD P DR Q LA
Sbjct: 92 PARAAVYETVEALKSFTGHGAVKFTNGVLRSYLRNKDKIIFP-------DRNQNPVNFLA 144
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQ 284
YS+P W+++ W G ++ +L + N P ++R N R V + + ++
Sbjct: 145 NYYSYPEWIIKEWINKYGFKDTERLCQYLNDSPPVTVRYN-RLQVDQKRFLEVFKKYNIE 203
Query: 285 VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 344
V E + D + V + L K+G VQ +A L V+ P PG ++D A
Sbjct: 204 V--ESTTVPDCY--VVNNFNTIKDLPLFKDGGFIVQGPAATLAGFVLGPDPGNRVLDMSA 259
Query: 345 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNST 404
PGGKT ++A ++ +G + A+DI + +L+++ E VN +++TI D R + S
Sbjct: 260 GPGGKTTHLAELMNNRGEIIALDIYEHKLKLIEENCNRLGVN-IVKTIKVDGRDYT--SQ 316
Query: 405 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464
K D VL+DAPC+GLG+++ + +++WNR D+++L+ +Q LL A LV+ GG ++YS
Sbjct: 317 EKFDMVLVDAPCTGLGLVAHKPEIKWNRTENDVKKLQEIQKSLLHNALSLVRDGGFVLYS 376
Query: 465 TCSIDPEENEERVEAFLLRHPEFSIDPAD 493
TC++ ENEE V +L+ +F + P +
Sbjct: 377 TCTLTRAENEEVVNQ-VLQQTDFVVSPVN 404
>gi|417091502|ref|ZP_11956379.1| tRNA and rRNA cytosine-C5-methylase [Streptococcus suis R61]
gi|353533110|gb|EHC02777.1| tRNA and rRNA cytosine-C5-methylase [Streptococcus suis R61]
Length = 436
Score = 188 bits (478), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 135/430 (31%), Positives = 215/430 (50%), Gaps = 32/430 (7%)
Query: 101 GFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYE 160
T L +D L T++V GT+ + L+ + D + ++ + +L + Y+
Sbjct: 33 ALETSRLSAQDKGLATELVYGTVSRKITLEWYLAHFIEDRE---KLDTWVYYLLMLSLYQ 89
Query: 161 IVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQ 219
+V LD +P +AVV+E V +AK +PG VN ILRKL +SLP P + + +
Sbjct: 90 LVYLDKLPTHAVVNEAVNIAK--RKPGTDKFVNAILRKL----SQDSLPKP---ADIKRK 140
Query: 220 ARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLN 279
+ L+ YS PVW+V+ G E A K+ + S+R + V R
Sbjct: 141 NKRLSVQYSVPVWLVQTLIAEYGDERAEKIFQSLHDRNKASVRVTDGQQVER-------- 192
Query: 280 LLKLQVPHELSLHLDEFIRVKTGLQNVIQAG--LLKEGLCAVQDESAGLVVAVVDPQPGQ 337
+ EL + V + AG KEGL +QDE++ LV +D Q +
Sbjct: 193 -----LAEELGAQHSQLSPVGLVKSHGHFAGTDYFKEGLITIQDETSQLVAPTLDIQGDE 247
Query: 338 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADL- 396
I+D CAAPGGKT +MAS L+ G V A+D+ + +L ++ E A+ + I T D
Sbjct: 248 IILDACAAPGGKTCHMASYLTS-GKVIALDLYEHKLTLIEENARRLGLADKIETKGLDAS 306
Query: 397 RTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVK 456
R + DK+L+DAPCSG+G++ ++ D+R+N+ D + LK +Q ++LD+ +K
Sbjct: 307 RVHEEFGPDTFDKILVDAPCSGIGLIRRKPDIRYNKASMDFDSLKTIQLQILDSVCQSLK 366
Query: 457 PGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSL 516
GG++ YSTC+I +EN+E ++ FL HP F + P + G P ++
Sbjct: 367 IGGIMTYSTCTIIAKENQEVIQEFLQNHPNFEQVTLEH--PQTDIMVDGCLLITPEQYKT 424
Query: 517 DGAFAARLVR 526
DG F +L R
Sbjct: 425 DGFFIGQLRR 434
>gi|237735904|ref|ZP_04566385.1| SUN protein [Mollicutes bacterium D7]
gi|374626103|ref|ZP_09698517.1| ribosomal RNA small subunit methyltransferase B [Coprobacillus sp.
8_2_54BFAA]
gi|229381649|gb|EEO31740.1| SUN protein [Coprobacillus sp. D7]
gi|373914629|gb|EHQ46444.1| ribosomal RNA small subunit methyltransferase B [Coprobacillus sp.
8_2_54BFAA]
Length = 417
Score = 188 bits (477), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 136/423 (32%), Positives = 226/423 (53%), Gaps = 32/423 (7%)
Query: 91 NEMGYVERTLG-FRTKDLDDR-DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEP 148
NE Y+ TL + K L R D L T IV GTI+ + YL++ + +K + +
Sbjct: 15 NEQSYLNITLNDYLEKSLLSRNDKDLATRIVYGTIQNKLYLEYQLAPYIQGKKIKNREKM 74
Query: 149 LLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSL 207
+LL + Y+++ LD +P YAV+DE VRLAK AG VN ILR N L
Sbjct: 75 ILL----MSLYQLIFLDKVPDYAVIDEAVRLAK-KRDNFAGKFVNAILR--------NFL 121
Query: 208 PLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRK 267
K E +++ + + ++ SHP+W+V+ +K A K+ +N+ P+ + R N K
Sbjct: 122 RNGKCEIDEKDELKRISIETSHPLWIVKMLSKQYDLNIAKKICQHDNTPPTRAARVNILK 181
Query: 268 GVTRADLVMQLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLV 327
T+A L+ N E+ + + + G N+ K GL +QDES+ L+
Sbjct: 182 -TTKAQLLTDENF-------EVGNLSPDGLLYRAG--NIANTDYFKNGLVTIQDESSQLI 231
Query: 328 VAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNS 387
++DPQP ++D C APG KT ++A+ ++ QG + A D+ + +++++ K VN+
Sbjct: 232 APLLDPQPTDLVLDMCCAPGSKTTHLAAIMNNQGKIIAYDLFEHKIKLVEANLKRLGVNN 291
Query: 388 VIRTIHADLRTFADN--STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQD 445
V +H T S DK+LLDAPCSGLGV+ ++ +++++ M+ + LQ
Sbjct: 292 V--ELHVGDATLLKEKYSEESFDKILLDAPCSGLGVMKRKPEIKYHDS-GAMDTIIPLQA 348
Query: 446 ELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHG 505
+LLD A L+K G +VYSTC+I+ +ENE+ ++ FL ++P+ I ++P + + G
Sbjct: 349 KLLDNAYYLLKKNGKMVYSTCTINKKENEQMIKQFLDKYPDMKIIEEKKILPYVYDS-DG 407
Query: 506 FFF 508
F+
Sbjct: 408 FYM 410
>gi|405355360|ref|ZP_11024586.1| Ribosomal RNA small subunit methyltransferase B [Chondromyces
apiculatus DSM 436]
gi|397091702|gb|EJJ22504.1| Ribosomal RNA small subunit methyltransferase B [Myxococcus sp.
(contaminant ex DSM 436)]
Length = 438
Score = 188 bits (477), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 139/427 (32%), Positives = 211/427 (49%), Gaps = 30/427 (7%)
Query: 108 DDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMP 167
D RD LVT++ G R + LD+ I ++ ++E +L LRIG Y+I +P
Sbjct: 36 DPRDAALVTELTYGATRRQLALDYAIARFA--DRKLDALEDKVLAALRIGAYQIFHTRVP 93
Query: 168 PYAVVDENVR-LAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATI 226
A V E V+ L +V L AG N ILRKL L PLP + A L+
Sbjct: 94 ARAAVAETVQALKEVGLARAAG-FANAILRKLAELPGP---PLPPVSN----LAHHLSVR 145
Query: 227 YSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVP 286
SHP W+V RW + G+E A ++V +N P+ +RAN+ K VTR L+ Q + ++
Sbjct: 146 ESHPQWLVERWLRQFGRERAEAMLVADNQSPAVVVRANTAK-VTRDALLAQFQEVGVEAT 204
Query: 287 ----HELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 342
+ + L RV ++V EGL VQDE+A LV ++D
Sbjct: 205 ATTVSPVGITLPSVGRV----EDVYG---YAEGLWQVQDEAAQLVGVYGAIPESARVLDA 257
Query: 343 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN 402
CAAPGGK + A V A+D++ +LR + A+ + S ++ D
Sbjct: 258 CAAPGGKACHQAQSHD----VVAVDLHAHKLRKIEAEARRLGLESRLKAFAHDAAEPFPE 313
Query: 403 STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLV 462
+ + ++DAPCSGLG L + +LR+ R+ ED+ L LQ +L+ V GG+LV
Sbjct: 314 AWGEFHAFVVDAPCSGLGTLRRHPELRYRRKEEDIARLATLQRRILENCQEAVPAGGLLV 373
Query: 463 YSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPS-DFVTKHGFFFSDPIKHSLDGAFA 521
Y+ C++DP E +++VE FL HPE++ +P ++P + + P DG FA
Sbjct: 374 YAVCTMDPLEGQDQVEMFLRSHPEWTAEPP--VLPGLKLPLTQAYLRTLPGPEGFDGFFA 431
Query: 522 ARLVRAF 528
ARL + +
Sbjct: 432 ARLRKLY 438
>gi|344995747|ref|YP_004798090.1| sun protein [Caldicellulosiruptor lactoaceticus 6A]
gi|343963966|gb|AEM73113.1| sun protein [Caldicellulosiruptor lactoaceticus 6A]
Length = 410
Score = 188 bits (477), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 126/411 (30%), Positives = 216/411 (52%), Gaps = 19/411 (4%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
F K +++D L ++V G +R++ +D+ I + + +L ILR+ YE+
Sbjct: 8 FHQKLKNEKDRALFVELVHGVLRYKNLIDYYINFVAKK----GVKDRRILNILRVATYEL 63
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
+ L+ +P YA V E +A + P VN ILR ++ K+ L +++ D
Sbjct: 64 LFLEKIPEYATVSEACEIAS-KISPHLKAFVNAILRNIIRNKNQIEESLERIKDVDYKSY 122
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
++ S+P +++ + G E+ +K++ + N+ P S++ N++K T + + Q L
Sbjct: 123 VSIKL--SYPRFLIDYLEESYGLEKTLKILEFLNTKPPQSIKINTKK--TDVNTLTQ-EL 177
Query: 281 LKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAV--VDPQPGQS 338
K +E++ H +E I V G N+ + L KEG QD ++ LVV D + +
Sbjct: 178 EKNGFKYEINSHNNEIIHVLKG--NIKETELYKEGYFYFQDLASSLVVKFNQEDFKRAKK 235
Query: 339 IVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT 398
++D CAAPGGKT A + G V A DIN+ +L +L E +++I +D
Sbjct: 236 VIDLCAAPGGKTFNCAEVIDG--FVVACDINEHKLDVLRENILRLGFDNII-VAKSDAEV 292
Query: 399 FADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPG 458
F + K D V+ D PC+G G + K+ D++WN+ +D+++L LQ +LD A+ +K G
Sbjct: 293 FNPDFAEKFDIVIADLPCTGFGAIRKKPDIKWNKTQQDIQKLHELQVRILDNAAGYLKKG 352
Query: 459 GVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFS 509
G+L YSTC++ +ENEE V FL +H +FS+ + P +F GFF +
Sbjct: 353 GLLFYSTCTLSRKENEETVLKFLDKHRDFSLVSQTTIFPDEFKC-DGFFIA 402
>gi|404418446|ref|ZP_11000213.1| 16S rRNA methyltransferase B [Staphylococcus arlettae CVD059]
gi|403489039|gb|EJY94617.1| 16S rRNA methyltransferase B [Staphylococcus arlettae CVD059]
Length = 435
Score = 188 bits (477), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 116/412 (28%), Positives = 220/412 (53%), Gaps = 36/412 (8%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPY 169
D L T+IV GT++ + LD+++ + ++ + +L + Y+ V L+ +P +
Sbjct: 40 DKNLYTEIVYGTLKRKYTLDYMLKPFVQ-----TKIKGWVRLLLWMSIYQHVYLNRIPQH 94
Query: 170 AVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSH 229
A+++E V +AK P GN+VNGILR + LP + Q R +A YS
Sbjct: 95 AIINEAVEIAKYKGGPHNGNVVNGILRNFM------RTELPDFSNINNDQTR-IAIAYSL 147
Query: 230 PVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLV-MQLNLLKLQVPHE 288
P W+V+ W + G E+ + + + ++R N+ + A + +Q +++ H+
Sbjct: 148 PKWLVKHWVTHFGIEKTEAMAQSFLTKVNQTVRVNTTQTTIEAVIAKLQDEGFEVEQDHD 207
Query: 289 LSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGG 348
++ E + +K +I++ + K+GL ++QD+S+ V ++ P+PG S++D C+APGG
Sbjct: 208 IA----ECLHIKGN--TIIESRIFKDGLVSIQDKSSMFVANILAPEPGDSVLDACSAPGG 261
Query: 349 KTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCD 408
K ++A ++ QG V A DI++ ++ ++N + ++++++ H + + D
Sbjct: 262 KACHIAELMANQGQVDATDIHEHKIELINFNKRKLRLSNILSYQHDATQKYDK----VYD 317
Query: 409 KVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSI 468
K+L+DAPCSGLGVL + ++++ + ++ L LQ E+L+ VKPGG +VYSTC++
Sbjct: 318 KILVDAPCSGLGVLRHKPEIKYEQSQTSIQALLELQLEILNNIKHNVKPGGTIVYSTCTV 377
Query: 469 DPEENEERVEAFLLRHPEFSIDPADG-----------LVPSDFVTKHGFFFS 509
+ ENE + FL + +F + + ++P DF GFF +
Sbjct: 378 EQLENENVIYTFLKENKDFEFELIEHPITKEQVKTMQILPQDF-NSDGFFIT 428
>gi|168207268|ref|ZP_02633273.1| ribosomal RNA small subunit methyltransferase B [Clostridium
perfringens E str. JGS1987]
gi|169342659|ref|ZP_02629420.2| ribosomal RNA small subunit methyltransferase B [Clostridium
perfringens C str. JGS1495]
gi|169299165|gb|EDS81235.1| ribosomal RNA small subunit methyltransferase B [Clostridium
perfringens C str. JGS1495]
gi|170661376|gb|EDT14059.1| ribosomal RNA small subunit methyltransferase B [Clostridium
perfringens E str. JGS1987]
Length = 442
Score = 188 bits (477), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 135/436 (30%), Positives = 228/436 (52%), Gaps = 29/436 (6%)
Query: 96 VERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILR 155
+E F + D+D +D L+T++V GTI++++ +D ++ D ++ ++ ILR
Sbjct: 23 IEINKQFASNDIDPKDKGLITEVVYGTIKYKKMIDIILSSFVAD---IGKIDESVVNILR 79
Query: 156 IGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEG 214
Y++ LD +PPYA+V+E V L K P VNG+LR L++ N L
Sbjct: 80 SAIYQMKFLDRVPPYAIVNEAVNLTK-ETEPNLAKFVNGVLRNY--LRNENKNFKVGLRN 136
Query: 215 NDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADL 274
N+ AL +S WM+ + K G+E A++++ N+ P ++R N+ K D
Sbjct: 137 NE-----ALCYDFSFDRWMIEMFIKQYGKEYALRILRGLNTIPYVTVRVNTCKA--DYDE 189
Query: 275 VMQLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQ 334
V + L + E E I +K G + + L +EGL VQDESA LV + D +
Sbjct: 190 VYE-RLEEEGYDIEEGAFSPEAIIIKKG-SAIEKNKLYQEGLITVQDESAMLVAPLFDLK 247
Query: 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETA-KLHQVNSVIRTIH 393
+ ++D C+APG K ++ + +G V A DI+ +L ++ E +L N +
Sbjct: 248 GDEQVMDLCSAPGTKATHIGELMMNKGKVVAFDIHDHKLALIKENIDRLGLTNVEVEL-- 305
Query: 394 ADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASL 453
D D+VLLD PCSGLG++ K+ +++WN++ D+ E+ +Q E+L A
Sbjct: 306 GDATKINSKYINWADRVLLDVPCSGLGIIRKKPEIKWNKKNNDLTEVVKVQKEILKNAWN 365
Query: 454 LVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSID-----PADGLVPSDFVTKHGFFF 508
++ GG LVYSTC+++ +ENEE ++ F+ R+ + ++ AD +V +D +G
Sbjct: 366 YLREGGELVYSTCTLNKKENEEVIDWFVERNSDCEVEKVFLGKADNVVYND----NGSVT 421
Query: 509 SDPIKHSLDGAFAARL 524
P K+ +DG F A+L
Sbjct: 422 ILPNKY-MDGFFIAKL 436
>gi|260584743|ref|ZP_05852489.1| ribosomal RNA small subunit methyltransferase B [Granulicatella
elegans ATCC 700633]
gi|260157766|gb|EEW92836.1| ribosomal RNA small subunit methyltransferase B [Granulicatella
elegans ATCC 700633]
Length = 441
Score = 188 bits (477), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 134/420 (31%), Positives = 222/420 (52%), Gaps = 30/420 (7%)
Query: 110 RDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPP 168
+D L+T++ GTI+ + +D + K ++P + Q+LRI Y++V LD +P
Sbjct: 38 KDKGLLTELFYGTIQRKMTIDFYLAPYIQKAK---KIQPWVKQLLRISIYQMVFLDKIPD 94
Query: 169 YAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYS 228
+A + E V++AK G VNG+LR + N+ +++ D ++ YS
Sbjct: 95 HAAIFEAVQIAKKRGHQGIAKFVNGVLRNF---QRNDLRSFEEIKDTDER----MSVQYS 147
Query: 229 HPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHE 288
P WM + + + G E+A ++ + PS S+R + V QL LL+ V
Sbjct: 148 IPKWMYQLFKQQYGVEQAQQISESILTAPSVSVRIQPNH--LNQEQVKQL-LLEEGVQTR 204
Query: 289 LSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGG 348
S + + V+ G NV + ++G+ +QDE++ LV V + +P ++D CAAPGG
Sbjct: 205 ESTLSNRCLIVEEG--NVFLSKTFEKGIITIQDEASSLVAQVANLKPTNKVLDTCAAPGG 262
Query: 349 KTLYMASCL--SGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-NSTV 405
KT ++AS L S G V A+D+ + +L+ + E AK QV+ I D R + T
Sbjct: 263 KTTHIASYLDPSKGGRVDALDLYEHKLKKIQENAKRLQVDDCISMRILDARNAQEAYPTE 322
Query: 406 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465
D V +DAPCSGLG++ ++ D+++ + L+D++ L+ +Q ++L +AS +VK G LVYST
Sbjct: 323 SFDAVFVDAPCSGLGLVRRKPDIKYTKSLKDLKSLEKIQLDILLSASKMVKSKGSLVYST 382
Query: 466 CSIDPEENEERVEAFLLRHPEFSIDPAD----------GLVPSDFVTKHGFFFSDPIKHS 515
C+I+ EN E V FL +P F I+P ++P+DF GF+ +K S
Sbjct: 383 CTINKAENRELVNQFLEENPAFEIEPIGKWIHKDTEDITILPNDF-NSDGFYICKLVKKS 441
>gi|167757026|ref|ZP_02429153.1| hypothetical protein CLORAM_02575 [Clostridium ramosum DSM 1402]
gi|167703201|gb|EDS17780.1| ribosomal RNA small subunit methyltransferase B [Clostridium
ramosum DSM 1402]
Length = 417
Score = 188 bits (477), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 136/423 (32%), Positives = 226/423 (53%), Gaps = 32/423 (7%)
Query: 91 NEMGYVERTLG-FRTKDLDDR-DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEP 148
NE Y+ TL + K L R D L T IV GTI+ + YL++ + +K + +
Sbjct: 15 NEQSYLNITLNDYLEKSLLSRNDKDLATRIVYGTIQNKLYLEYQLAPYIQGKKIKNREKM 74
Query: 149 LLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSL 207
+LL + Y+++ LD +P YAV+DE VRLAK AG VN ILR N L
Sbjct: 75 ILL----MSLYQLIFLDKVPDYAVIDEAVRLAK-KRDNFAGKFVNAILR--------NFL 121
Query: 208 PLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRK 267
K E +++ + + ++ SHP+W+V+ +K A K+ +N+ P+ + R N K
Sbjct: 122 RNGKCEIDEKDELKRISIETSHPLWIVKMLSKQYDLNIAKKICQHDNTPPTRAARVNILK 181
Query: 268 GVTRADLVMQLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLV 327
T+A L+ N + + L+ + G N+ K GL +QDES+ L+
Sbjct: 182 -TTKAQLLTDENFEAGNLSPDGLLY-------RAG--NIANTDYFKNGLVTIQDESSQLI 231
Query: 328 VAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNS 387
++DPQP ++D C APG KT ++A+ ++ QG + A D+ + +++++ K VN+
Sbjct: 232 APLLDPQPTDLVLDMCCAPGSKTTHLAAIMNNQGKIIAYDLFEHKIKLVEANLKRLGVNN 291
Query: 388 VIRTIHADLRTFADN--STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQD 445
V +H T S DK+LLDAPCSGLGV+ ++ +++++ M+ + LQ
Sbjct: 292 V--ELHVGDATLLKEKYSEESFDKILLDAPCSGLGVMKRKPEIKYHDS-GAMDTIIPLQA 348
Query: 446 ELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHG 505
+LLD A L+K G +VYSTC+I+ +ENE+ ++ FL ++P+ I ++P + + G
Sbjct: 349 KLLDNAYYLLKKNGKMVYSTCTINKKENEQMIKQFLDKYPDMKIIEEKKILPYVYDS-DG 407
Query: 506 FFF 508
F+
Sbjct: 408 FYM 410
>gi|325680270|ref|ZP_08159830.1| ribosomal RNA small subunit methyltransferase B [Ruminococcus albus
8]
gi|324107979|gb|EGC02235.1| ribosomal RNA small subunit methyltransferase B [Ruminococcus albus
8]
Length = 429
Score = 187 bits (476), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 134/422 (31%), Positives = 215/422 (50%), Gaps = 29/422 (6%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD 165
D D RD + ++ + G + R LD +I L + K + + L ILR G Y++ +D
Sbjct: 34 DFDKRDKKFISALFYGVLERRLTLDAMIAELSKNPK--NKLNNTLRNILRSGLYQLKYMD 91
Query: 166 -MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P A VDE+V +AK P + VNG+LR+ + + + +LP +D R L+
Sbjct: 92 SVPDNAAVDESVEMAKKLRNPASAGFVNGLLREFI--RRDKALP-----KSDTEIGR-LS 143
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQ 284
YS P W+V +W G+E+ + L+ + ++R N G L M L
Sbjct: 144 LEYSCPEWLVGKWLAEYGKEKCLSLLESSIGRAPATVRINHLIGSVEETLDM---LAAEG 200
Query: 285 VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 344
V E S D + + V + +EG VQD ++ L +DPQ G +++D CA
Sbjct: 201 VTFERSSISDYTVHLANA-GAVEKTKAYREGRFHVQDIASQLCCKALDPQAGDTVLDLCA 259
Query: 345 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNST 404
APGGKT +A + +G V A D++ R++++ A ++ V ++ + + F D
Sbjct: 260 APGGKTFTIAEMMGNEGRVLAFDLHPNRVKLIKSGADRLGLSCVTAEVN-NAKVFNDK-L 317
Query: 405 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464
D+VL+DAPCSGLGV+ ++ ++++ + D E L +Q E+LD AS VK GG++VYS
Sbjct: 318 PPADRVLVDAPCSGLGVIRRKPEIKY-KDPADFERLPAVQYEILDTASKYVKAGGLMVYS 376
Query: 465 TCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARL 524
TC++ EN++ V+ FL H +F D D + +T P + DG F ARL
Sbjct: 377 TCTVSRAENDDVVKKFLAAHEDFEPDGEDFM---QTIT--------PEMYGSDGFFTARL 425
Query: 525 VR 526
R
Sbjct: 426 RR 427
>gi|418411636|ref|ZP_12984903.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis BVS058A4]
gi|410892362|gb|EKS40156.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis BVS058A4]
Length = 435
Score = 187 bits (476), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 130/420 (30%), Positives = 220/420 (52%), Gaps = 38/420 (9%)
Query: 104 TKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTF--SSMEPLLLQILRIGFYEI 161
T +++ D L T++V GTI+ + LD+L+ K F + ++ + Q+L + Y+
Sbjct: 33 TNNINTVDKNLFTELVYGTIKRKYTLDYLL-------KPFIKTKIKSWVRQLLWMSLYQY 85
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
+ LD +P +A++ E V +AK GN+VNGILR ++ LP LE D +
Sbjct: 86 LYLDKIPNHAIIHEAVDIAKKRGGYHTGNIVNGILRTVM------RTELPSLEDIDDTKK 139
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
R +A YS P W+V W + G E+ + + ++RAN ++RA + ++
Sbjct: 140 R-IAIQYSLPKWIVDHWVTHFGVEKTENIARSFLEPVATTVRAN----ISRASIDSIISK 194
Query: 281 LKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIV 340
L+ + H + F +G+ V+ + KEG ++QD+S+ +V V++ ++
Sbjct: 195 LEQEGYHVKKDDMLPFCLHISGMP-VVNSNAFKEGYISIQDKSSMMVAYVMNLGRDDKVL 253
Query: 341 DCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 400
D C+APGGK +MA LS +G V A DI++ ++ ++ + K ++N+ I D
Sbjct: 254 DACSAPGGKACHMAEILSPEGHVDATDIHEHKINLIKQNIKKLKLNN-INAFQHDATEVY 312
Query: 401 DNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGV 460
D DK+L+DAPCSGLGVL + ++++++ ++ L LQ ++L+ +KPGG
Sbjct: 313 DKM---YDKILVDAPCSGLGVLRHKPEIKYSQSQNSIKSLVELQLKILENVKDNIKPGGT 369
Query: 461 LVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGL-----------VPSDFVTKHGFFFS 509
+VYSTC+I+ ENE + FL RH +F +P L +P DF GFF S
Sbjct: 370 IVYSTCTIEQMENENVIYTFLKRHKDFEFEPFQNLATGEQVKTLQILPQDF-NSDGFFIS 428
>gi|410456987|ref|ZP_11310834.1| 16S rRNA methyltransferase B [Bacillus bataviensis LMG 21833]
gi|409926961|gb|EKN64112.1| 16S rRNA methyltransferase B [Bacillus bataviensis LMG 21833]
Length = 449
Score = 187 bits (476), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 127/386 (32%), Positives = 209/386 (54%), Gaps = 26/386 (6%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPY 169
D+ L+T++ GT++ R LD + D K ++ + +LR+ Y++V LD +P
Sbjct: 43 DVGLLTELTYGTLQRRMALDFFLQPFIKDNKKLANW---IHHLLRMTLYQMVYLDRIPDR 99
Query: 170 AVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEG-NDRAQARALATIYS 228
A + E V +AK G +LVNG+LR + LP L +D + +L T S
Sbjct: 100 AAIYEAVEIAKSRGHKGIASLVNGVLRNI------QREGLPSLSDVSDPIERLSLET--S 151
Query: 229 HPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHE 288
HP W+V RW G E+ ++ N + P + R N K ++R + V L Q+ E
Sbjct: 152 HPEWLVTRWVNQFGYEKTKEMCEINLTAPMQTARVNLTK-ISRDECVAILEEDGFQI--E 208
Query: 289 LSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGG 348
S + E IR G N+ K G+ +QDES+ L + + ++D CAAPGG
Sbjct: 209 KSPIIPEAIRSLKG--NLASTIAFKYGMLTIQDESSMLAAYALGAMENEFVLDACAAPGG 266
Query: 349 KTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR----TFADNST 404
K+ ++A L G V ++D+++ +++++N+ A+ + S I+T +D R F D +
Sbjct: 267 KSTHIAEKLENTGEVISVDLHQHKVKLINDNARRLGL-SNIKTNVSDSRLLQEKFKDET- 324
Query: 405 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464
++LLDAPCSGLGV+ ++ D+++ + +D+ L +Q LL + + L+K GG+LVYS
Sbjct: 325 --FHRILLDAPCSGLGVMRRKPDMKYTKTEKDLNRLSNIQQNLLTSVAPLLKKGGILVYS 382
Query: 465 TCSIDPEENEERVEAFLLRHPEFSID 490
TC++D EEN+ V+ FL +PEF D
Sbjct: 383 TCTVDKEENDNTVKTFLENNPEFEGD 408
>gi|365830316|ref|ZP_09371898.1| ribosomal RNA small subunit methyltransferase B [Coprobacillus sp.
3_3_56FAA]
gi|365263497|gb|EHM93327.1| ribosomal RNA small subunit methyltransferase B [Coprobacillus sp.
3_3_56FAA]
Length = 417
Score = 187 bits (476), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 135/423 (31%), Positives = 226/423 (53%), Gaps = 32/423 (7%)
Query: 91 NEMGYVERTLG-FRTKDLDDR-DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEP 148
NE Y+ TL + K L R D L T IV GTI+ + YL++ + +K + +
Sbjct: 15 NEQSYLNITLNDYLEKSLLSRNDKDLATRIVYGTIQNKLYLEYQLAPYIQGKKIKNREKM 74
Query: 149 LLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSL 207
+LL + Y+++ LD +P YAV+DE VRLAK AG VN ILR N L
Sbjct: 75 ILL----MSLYQLIFLDKVPDYAVIDEAVRLAK-KRDNFAGKFVNAILR--------NFL 121
Query: 208 PLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRK 267
K E +++ + + ++ SHP+W+V+ +K A K+ +N+ P+ + R N K
Sbjct: 122 RNGKCEIDEKDELKRISIETSHPLWIVKMLSKQYDLNIAKKICQHDNTPPTRAARVNILK 181
Query: 268 GVTRADLVMQLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLV 327
T+A L+ N + + L+ + G N+ K GL +QDES+ L+
Sbjct: 182 -TTKAQLLTDENFEAGNLSPDGLLY-------RAG--NIANTDYFKNGLVTIQDESSQLI 231
Query: 328 VAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNS 387
++DPQP ++D C APG KT ++A+ ++ QG + A D+ + +++++ K VN+
Sbjct: 232 APLLDPQPTDLVLDMCCAPGSKTTHLAAIMNNQGKIIAYDLFEHKIKLVEANLKRLGVNN 291
Query: 388 VIRTIHADLRTFADN--STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQD 445
V +H T S DK+LLDAPCSGLGV+ ++ +++++ M+ + LQ
Sbjct: 292 V--ELHVGDATLLKEKYSEESFDKILLDAPCSGLGVMKRKPEIKYHDS-GAMDTIIPLQA 348
Query: 446 ELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHG 505
+LLD A L+K G ++YSTC+I+ +ENE+ ++ FL ++P+ I ++P + + G
Sbjct: 349 KLLDNAYYLLKKNGKMIYSTCTINKKENEQMIKQFLDKYPDMKIIEEKKILPYVYDS-DG 407
Query: 506 FFF 508
F+
Sbjct: 408 FYM 410
>gi|187778898|ref|ZP_02995371.1| hypothetical protein CLOSPO_02493 [Clostridium sporogenes ATCC
15579]
gi|187772523|gb|EDU36325.1| ribosomal RNA small subunit methyltransferase B [Clostridium
sporogenes ATCC 15579]
Length = 442
Score = 187 bits (476), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 139/467 (29%), Positives = 242/467 (51%), Gaps = 35/467 (7%)
Query: 61 RAVSAVRLMRIQFGGAFADL-LNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIV 119
R V+ L + + GA++++ LNKK S +L D D L+T+IV
Sbjct: 5 REVALDVLKAVLYEGAYSNIVLNKKLNKS-----------------NLKDNDKALITEIV 47
Query: 120 GGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRL 178
GT++++ LD I + + + +M+ + ILRI Y+I LD +P +A V+E V +
Sbjct: 48 YGTLKYKETLD--IIIQSYLKNPIKTMDKNIANILRITIYQIRYLDKIPSFAAVNEAVEM 105
Query: 179 AKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWT 238
+K + LVNG+LR + N +DR + IYS+P W+++ +
Sbjct: 106 SK-KISIKYSKLVNGVLRNYIRTYKNKKFY------DDRNNLEKFSFIYSYPKWLIKMFI 158
Query: 239 KYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFIR 298
G E A K++ N P+ ++R N+ K + + +L+ + E E I+
Sbjct: 159 SQYGIEIAEKILKGLNERPNITVRVNNLK-IDYDEAFEKLDEYGYNI--EEGYICPEAIQ 215
Query: 299 VKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLS 358
+ G +N+ + L EG VQDESA LV ++ ++D C+APGGKT +++ ++
Sbjct: 216 IIKG-KNIEKNPLFIEGDITVQDESAMLVAPSMELTEESIVLDLCSAPGGKTTHISEIIN 274
Query: 359 GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSG 418
+ VYA D+++ +L ++ E AK + +V T D F +VL+D PCSG
Sbjct: 275 NKSKVYAYDVHQNKLSLIEENAKRLGIKNV-ETDVCDAAIFNKELKEIAHRVLMDVPCSG 333
Query: 419 LGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVE 478
LG++ K+ +++W + ++++ + +Q ++++ + +K GG+L+YSTC+++ EENEE +
Sbjct: 334 LGIIRKKPEIKWTKNEKEIKNIIDIQRKIMNNGASYLKKGGILLYSTCTLNKEENEENIN 393
Query: 479 AFLLRHPEFSIDP-ADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARL 524
FL +H F I+P G V + K GF P +DG F A+L
Sbjct: 394 WFLKKHKNFKIEPLYYGDVDNIIYHKEGFVSILP-NDKMDGFFIAKL 439
>gi|257899950|ref|ZP_05679603.1| rRNA SAM-dependent methyltransferase [Enterococcus faecium Com15]
gi|257837862|gb|EEV62936.1| rRNA SAM-dependent methyltransferase [Enterococcus faecium Com15]
Length = 452
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 142/466 (30%), Positives = 244/466 (52%), Gaps = 39/466 (8%)
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVG 120
R ++ + L R+ GGA+++LL NEM + +L+ +D+ L T+++
Sbjct: 13 RYMALLTLERVNKGGAYSNLLL--------NEM--------IKQSELNQKDVGLFTELIY 56
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLA 179
GTI +R L+ + L K ++ + +L + Y++ LD +P +A+++E V +A
Sbjct: 57 GTISHQRLLEFYVAPLIAKAK---KVDDWVKTLLYLSVYQLEFLDKVPAHAILNEAVEIA 113
Query: 180 KVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTK 239
KV PG G VNG+LR + P L+G R L+ S P+WM +R
Sbjct: 114 KVKGNPGTGKFVNGVLR------NYQRQGAPDLQGIADPIER-LSVKISLPLWMTKRLVD 166
Query: 240 YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFIRV 299
+G EE KL + S R ++R+ ++R + L + ++ E S I
Sbjct: 167 QIGYEETEKLGLSLYQPSHASARVDTRR-LSRDQAITVLQ--EEEITAEKSQVSPCGIVA 223
Query: 300 KTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCL-- 357
K G ++ + L +G+ +QDES+ LV + + ++D CAAPGGKT ++AS L
Sbjct: 224 KKG--HLASSSLFHDGVMTIQDESSMLVAPSMQIEHEHHVLDACAAPGGKTTHIASFLDP 281
Query: 358 SGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVKCDKVLLDAPC 416
S G V A+D+++ +++++ E A V+S + D R + + D++L+DAPC
Sbjct: 282 SCGGEVIALDVHEHKVKLIEENATRLGVSSAVYAQKMDAREVSKQFEPEQFDRILVDAPC 341
Query: 417 SGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEER 476
SGLG+L ++ D+R+ ++ +++ L +Q E+L++ + +K G+L YSTC+I EEN++
Sbjct: 342 SGLGLLRRKPDIRYKKQPDELANLPKIQLEILESCAPALKSSGILTYSTCTILKEENQDV 401
Query: 477 VEAFLLRHPEFS-IDP-ADGLVPSDFVTKHGFFFSDPIKHSLDGAF 520
V AFL HP+F ID D ++ S V K + P + DG F
Sbjct: 402 VSAFLETHPDFERIDVLTDPMLQSSIVEKMLTLY--PHQFYTDGFF 445
>gi|420156785|ref|ZP_14663625.1| ribosomal RNA small subunit methyltransferase B [Clostridium sp.
MSTE9]
gi|394756795|gb|EJF39854.1| ribosomal RNA small subunit methyltransferase B [Clostridium sp.
MSTE9]
Length = 447
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 143/449 (31%), Positives = 229/449 (51%), Gaps = 33/449 (7%)
Query: 90 DNEMGY----VERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSS 145
D GY +++TL R L+ RD L T + G + R LD++I +
Sbjct: 17 DENEGYSNIVIDKTL--RRFSLEPRDAALATALFYGVLERRITLDYVIEAFSRNRGQI-- 72
Query: 146 MEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDN 204
+ P + +ILRIG Y+I+ ++ +P A V+E V AK +NG+LR + L+
Sbjct: 73 LSPTVREILRIGVYQILYMEKIPTSAAVNEAVNCAKENGAVKVSGFINGLLRSV--LRAE 130
Query: 205 NSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRAN 264
L LP R +AL+ YS P W++ WTK G+ ++ R N
Sbjct: 131 QPLRLPD---EKRQPLKALSVRYSCPEWLIDLWTKTYGEPLCHAILDSLFQKAPIYARVN 187
Query: 265 SRKGVTRADLVMQLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESA 324
+ K +T +L+ +L ++ ++ D I TG +++ +EGL +QD S+
Sbjct: 188 TVK-ITAEELIQRLEQEGVKA-TAITAVPDALILQNTGAVASLES--FQEGLFHIQDLSS 243
Query: 325 GLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQ 384
L A++DPQPG+ I+D CAAPGGK+ MA + +G + A D +G++ ++ + A+
Sbjct: 244 QLCCALIDPQPGERIIDVCAAPGGKSFTMAERMENRGELLAFDKYRGKVGLIRQGAERLG 303
Query: 385 VNSVIRTIHADLRTFADNSTV--KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKI 442
SVIR A +R A+ V ++VL DAPCSGLG++ ++ ++R+ + + ++ L
Sbjct: 304 F-SVIR---ASVRDAAEPKEVLAPANRVLCDAPCSGLGIIRRKPEIRYKPQ-DSLDSLPD 358
Query: 443 LQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDF-- 500
LQ +L +S LV+PGG+L YSTC+++P EN+ FL HPEF +P +P F
Sbjct: 359 LQYLILCRSSGLVEPGGLLFYSTCTLNPAENDAVAARFLKDHPEFEPEPLS--LPKSFRR 416
Query: 501 ---VTKHGFFFSDPIKHSLDGAFAARLVR 526
+H P+ H DG F A R
Sbjct: 417 AVREPEHQVTLLPPV-HGTDGFFIAAFRR 444
>gi|154485073|ref|ZP_02027521.1| hypothetical protein EUBVEN_02796 [Eubacterium ventriosum ATCC
27560]
gi|149734026|gb|EDM50145.1| ribosomal RNA small subunit methyltransferase B [Eubacterium
ventriosum ATCC 27560]
Length = 448
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 124/422 (29%), Positives = 218/422 (51%), Gaps = 19/422 (4%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
LD +T + GT+ R +D +I + + M+P++ +ILR+G Y+I +D
Sbjct: 43 LDKHQRSFITRLFQGTLERRIEIDFIINQF--SKTPVNKMKPVIREILRMGVYQIKYMDN 100
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P AV +E V+LA+ VNG+LR + ++ + PK Q L+
Sbjct: 101 VPVSAVCNEGVKLAEKRKFRNLKGFVNGVLRNIA--RNIEKIEYPK------EQKERLSV 152
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
IYS P W++ +WTK G + +++ + S+R N+ + T ++V L V
Sbjct: 153 IYSVPKWIIEKWTKEYGISKTEEMLEGLYKPKATSVRCNTSRA-TVEEIVKSLEYQGTTV 211
Query: 286 PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAA 345
E S D+ +++ +G + + K G+ VQDES+ +V +P+ I+D CAA
Sbjct: 212 --EKSKLYDKALKI-SGYDKLENLDVFKAGMITVQDESSMMVGIAANPKEKDYIIDVCAA 268
Query: 346 PGGKTLYMASCLSGQGLVYAIDINKGRLRILNET-AKLHQVNSVIRTIHADLRTFADNST 404
PGGK+L+++ L+G G V A D+ + ++ ++ E A++ N + + +D +
Sbjct: 269 PGGKSLHVSELLNGTGTVEARDLTEYKIGLIEENVARVGNENIITKV--SDATVLDKEAI 326
Query: 405 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464
K D V+ D PCSGLGV+ ++D+++N ++EL LQ ++L S VK GG L+YS
Sbjct: 327 EKADIVIADLPCSGLGVIGNKSDIKYNVTQNQIDELVELQRKILKQVSKYVKQGGKLLYS 386
Query: 465 TCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARL 524
TC+++ +EN+ V+ P F + +G+VP + G P ++ +DG F +
Sbjct: 387 TCTVNRQENDSNVKWIQDNLP-FKLQSLNGIVPEQLKCEKGCLQIYPGQYGMDGFFVSLF 445
Query: 525 VR 526
+R
Sbjct: 446 IR 447
>gi|293402263|ref|ZP_06646401.1| ribosomal RNA small subunit methyltransferase B
[Erysipelotrichaceae bacterium 5_2_54FAA]
gi|291304370|gb|EFE45621.1| ribosomal RNA small subunit methyltransferase B
[Erysipelotrichaceae bacterium 5_2_54FAA]
Length = 415
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 127/409 (31%), Positives = 215/409 (52%), Gaps = 30/409 (7%)
Query: 105 KDLD---DRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
K+LD +D L+T IV GT++ ++ +C ++ + +L + Y++
Sbjct: 27 KELDKAEHKDKGLITTIVYGTLQ-----NYRLCRYQWEDMVQKLPKEETAVLLDMSAYQL 81
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
+D +P YA+++E V +AK G LVN +L K V+ + LP D Q
Sbjct: 82 FYMDKLPAYAIINEAVEIAKKHGGKKQGALVNAVLHK-VMQRGQRELP------KDALQK 134
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
A+ T SHP W+++ W G+E + N R N + ++R +L+ Q N
Sbjct: 135 LAIKT--SHPDWLIKMWKAQYGEETCRAICESNMETRKQCARVNLMR-MSREELLAQDN- 190
Query: 281 LKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIV 340
+ V S V ++ +G+ ++QDE++ LV VDPQP + I+
Sbjct: 191 -QFTVGQLAS-------SVYYQGTSLAHTSWYVDGMLSIQDEASQLVAYCVDPQPKERIL 242
Query: 341 DCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 400
D CAAPG K+ +MA + +G + DI++ R+ ++ + A Q++S I I D
Sbjct: 243 DVCAAPGTKSTHMAELMQDEGEIICGDIHEHRVELIQQGADRLQLHS-IHPIVMDATELH 301
Query: 401 DNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGV 460
D+VL D PCSG GVL++++D++++ + EDM+ L LQ +L+ AS +VK GG+
Sbjct: 302 GLQEASFDRVLCDVPCSGYGVLARKSDIKYHMQSEDMDTLIPLQAAILEKASTMVKQGGI 361
Query: 461 LVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFS 509
LVYSTC+++ +ENE++VE FL +H EF++ + P +F + GF+ +
Sbjct: 362 LVYSTCTLNKKENEKQVEKFLKKHEEFTLVSQRTIFPFEFGSD-GFYMA 409
>gi|169349816|ref|ZP_02866754.1| hypothetical protein CLOSPI_00554 [Clostridium spiroforme DSM 1552]
gi|169293384|gb|EDS75517.1| ribosomal RNA small subunit methyltransferase B [Clostridium
spiroforme DSM 1552]
Length = 481
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 135/428 (31%), Positives = 227/428 (53%), Gaps = 43/428 (10%)
Query: 91 NEMGYVERTLG--FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEP 148
NE Y+ TL + L D LVT IV GT++ YL++ + ++K S +
Sbjct: 79 NEHSYLNITLNEYLKNSTLSRNDKDLVTRIVYGTVQNMIYLEYQLEPYIKNKKVKSREKM 138
Query: 149 LLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSL 207
+LL + Y+++ LD +P YA++DE V+LAK AG VN ILR L++
Sbjct: 139 ILL----MSLYQLIFLDKVPEYAIIDEAVKLAKKK-NFYAGKFVNAILRNY--LRNGKR- 190
Query: 208 PLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRK 267
K+E D + ++ T SHP+W+V+ +TK E A K+ + +N+ P + R N+ K
Sbjct: 191 ---KIETKDELEKLSIET--SHPLWLVKMFTKQYDYETAKKICIHDNTPPGRTARVNTLK 245
Query: 268 GVTRADLVMQLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLV 327
LLK +L D + N+ ++ KEGL +QDES+ LV
Sbjct: 246 TNKNT-------LLKEGCFENGNLAPDALLY---NAGNIAESTYFKEGLVTIQDESSQLV 295
Query: 328 VAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNS 387
++ P ++D C APG KT ++A+ ++ +G + A D+ + +++++ E K +++
Sbjct: 296 APLLSPSEDDLVLDMCCAPGSKTTHLAALMNNKGKIIACDLFEHKIKLVKENLKRLNISN 355
Query: 388 VIRTIHADLRTFADNSTVK-------CDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEEL 440
V +HA D +T+K DK+LLDAPCSGLGV+ ++ +++++ M+ +
Sbjct: 356 V--ELHA-----IDATTLKEKYLEGTFDKILLDAPCSGLGVMKRKPEIKYHDS-SVMDTI 407
Query: 441 KILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDF 500
LQ +LLD A L+K G +VYSTC+I+ +ENE+ ++ FL ++P+ I ++P F
Sbjct: 408 IPLQAKLLDNAYYLLKNNGKMVYSTCTINKKENEQMIKKFLDKYPDMKIVEERKILP--F 465
Query: 501 VTKHGFFF 508
V F+
Sbjct: 466 VYDSDGFY 473
>gi|429765805|ref|ZP_19298085.1| ribosomal RNA small subunit methyltransferase B [Clostridium
celatum DSM 1785]
gi|429185658|gb|EKY26632.1| ribosomal RNA small subunit methyltransferase B [Clostridium
celatum DSM 1785]
Length = 438
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 140/424 (33%), Positives = 230/424 (54%), Gaps = 22/424 (5%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD 165
DL+++D LVT++V GTIR ++ LD +I D S ME +L ILR+ Y++ LD
Sbjct: 33 DLNEKDRALVTELVYGTIRRKKTLDIIISNYVKD---ISLMEDGVLNILRMAIYQMHFLD 89
Query: 166 -MPPYAVVDENVRLAK-VALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARAL 223
+P +A +E V L+K ++L+ + LVNGILR D+ +E +D + +
Sbjct: 90 KVPDFAACNEAVELSKNISLQ--SSKLVNGILRSYTKNPDD-------IEVSDSPIDKLV 140
Query: 224 ATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKL 283
T YS+ W +R K G+E K++ N+ P ++R N+ K D V + L ++
Sbjct: 141 YT-YSYEPWFIRMIYKQYGEENGRKILAGLNATPKVTVRVNTNKA--DFDEVYE-KLEEM 196
Query: 284 QVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCC 343
E E I +K G ++ L +EG VQDESA LV ++D G ++D C
Sbjct: 197 GYDVEEGYACPEAIIIKGG-SSIENNELFREGYITVQDESAMLVAPLLDINEGDVVLDLC 255
Query: 344 AAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS 403
+APGGKT + A L G G VYA D+++ +L ++ E + +N+V D
Sbjct: 256 SAPGGKTTHAAELLEGTGKVYAFDLHENKLSLITENVERLGLNNV-EVDAMDATKLNSKY 314
Query: 404 TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463
DKVL+D PCSGLG++ K+ +++WN+ + +++L Q E+++ A +K GG ++Y
Sbjct: 315 VSMADKVLIDVPCSGLGIIRKKPEIKWNKSRKSLKDLVPTQREIMENAWQYLKQGGTMIY 374
Query: 464 STCSIDPEENEERVEAFLLRHPEFSIDPAD-GLVPSDFVTKHGFFFSDPIKHSLDGAFAA 522
STC+++ EEN E VE FL +H + I+ G + + K+G P ++ +DG + A
Sbjct: 375 STCTLNNEENGENVEWFLNKHKDAVIEKIFLGNMDNFIYEKNGALTILPNEY-MDGFYIA 433
Query: 523 RLVR 526
++ +
Sbjct: 434 KISK 437
>gi|373464418|ref|ZP_09555957.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
kisonensis F0435]
gi|371762620|gb|EHO51149.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
kisonensis F0435]
Length = 444
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 133/425 (31%), Positives = 221/425 (52%), Gaps = 42/425 (9%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPY 169
D L T+IV G I+ R L + + + + + E + ++L Y++ LD +P
Sbjct: 42 DKALFTNIVYGVIQHRLTLQYQLNPFIREPQ---NTETWVKELLYTAMYQLTYLDRVPKR 98
Query: 170 AVVDENVRLAKVALRPGAGNLVNGILRKLVL--LKDNNSLPLPKLEGNDRAQARALATIY 227
A+ DE +++AK G V GIL ++ + D N++ + + + L+ Y
Sbjct: 99 AIFDETIKIAKSMGHDGTRRFVTGILHQMDRKGVADVNAI---------QDENKRLSIAY 149
Query: 228 SHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPH 287
S P W+V + LG+ +A ++ N P S+RAN+ K T+ADL+ +L V
Sbjct: 150 SVPTWLVTMLQEQLGKAKAKSILQSLNVAPKQSVRANATK-TTQADLITKLAAADFDV-- 206
Query: 288 ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPG 347
E S E I +K G ++ + K+GL +QDESA L V + P I+D C+APG
Sbjct: 207 EKSQVASEGIIIKDG--QIVHSSFFKDGLLTIQDESAMLPVESMPINPDDMILDACSAPG 264
Query: 348 GKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT----FADNS 403
GKT +AS L G V+A+DI+K +L+ + + A V+ I T D R F D
Sbjct: 265 GKTTQIASRLKS-GKVFALDIHKNKLKTVLKNATRMGVDKNIETFELDARKVDQKFDDEL 323
Query: 404 TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463
D++L+DAPCSGLG+L ++ ++R+++ ED++ L +Q ++L+A + VK GG++ Y
Sbjct: 324 ---FDQILVDAPCSGLGLLRRKPEIRYDKTPEDIKRLSEIQLQILNAVAPKVKTGGMITY 380
Query: 464 STCSIDPEENEERVEAFLLRHPEFSI-------------DPADGLVPSDFVTKHGFFFSD 510
STC+I +EN++ ++ F+ H F + D + P D+ + GFF S
Sbjct: 381 STCTIVNQENQDVIDKFIKTHSNFEVTAPRTALNLESENDQMLKIYPDDYGS-DGFFVSS 439
Query: 511 PIKHS 515
++ S
Sbjct: 440 LVRKS 444
>gi|421768804|ref|ZP_16205514.1| Ribosomal RNA small subunit methyltransferase B [Lactobacillus
rhamnosus LRHMDP2]
gi|421771044|ref|ZP_16207705.1| Ribosomal RNA small subunit methyltransferase B [Lactobacillus
rhamnosus LRHMDP3]
gi|411185653|gb|EKS52780.1| Ribosomal RNA small subunit methyltransferase B [Lactobacillus
rhamnosus LRHMDP2]
gi|411186479|gb|EKS53603.1| Ribosomal RNA small subunit methyltransferase B [Lactobacillus
rhamnosus LRHMDP3]
Length = 446
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 142/454 (31%), Positives = 222/454 (48%), Gaps = 40/454 (8%)
Query: 85 GKGSGDNEMGYVERTLG--FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKT 142
GKG GY TL LD RD L+T+IV G I+ + LD+L+ + +
Sbjct: 19 GKG------GYSNLTLDHVITKYQLDSRDAGLLTNIVYGVIQHQLTLDYLLAPFVKNRQ- 71
Query: 143 FSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLL 201
++ + +L+ Y++ LD +P AV ++ +AK G V G+LR+
Sbjct: 72 ---LDTWVRCLLQTAVYQLQYLDKVPARAVFFDSTEIAKKLGHQGVAKFVTGVLRQ---- 124
Query: 202 KDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSL 261
+ P P + + LA S PVW+V++ LG+ + K++ N S+
Sbjct: 125 AQRSGYPDPMTIADP---IQRLAITSSTPVWLVKKLQAQLGETKTAKILAAINQPAHASI 181
Query: 262 RANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGL--LKEGLCAV 319
R N+ K A LLK P +L V AG +GL +
Sbjct: 182 RVNTTKTTVAA-------LLKALQPQFSALKESPLTPVGLVAPGGHLAGTREFADGLYTM 234
Query: 320 QDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQ--GLVYAIDINKGRLRILN 377
QDES+ LV +D QPG ++D CAAPGGKT ++A L G V A+D++ ++R++
Sbjct: 235 QDESSMLVAPSLDVQPGDQVLDACAAPGGKTTHIAQYLDPDQGGRVTALDLHANKVRLIQ 294
Query: 378 ETAKLHQVNSVIRTIHADLRTFADNSTVKC-DKVLLDAPCSGLGVLSKRADLRWNRRLED 436
+ AK ++ + D R A N + DK+L+DAPCSGLG++ ++ ++++ ++ ED
Sbjct: 295 QNAKRLDLDDRVAAQVMDARQVAANFAAESFDKILVDAPCSGLGLIRRKPEIKYTKQPED 354
Query: 437 MEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLV 496
++ L+ +Q +LD+ + +K GG L YSTC++ EEN++ V FL HPEF P L
Sbjct: 355 LQHLQKIQLAILDSVAPTLKIGGRLTYSTCTMVKEENQDVVAHFLATHPEFEQVPVLTLK 414
Query: 497 PSDFVTKHGF----FFSDPIKHSLDGAFAARLVR 526
P HG F D + DG F A L+R
Sbjct: 415 P--LAKTHGAPALQLFPD--DYDTDGFFIASLIR 444
>gi|349611597|ref|ZP_08890830.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus sp.
7_1_47FAA]
gi|348608444|gb|EGY58426.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus sp.
7_1_47FAA]
Length = 437
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 127/417 (30%), Positives = 222/417 (53%), Gaps = 35/417 (8%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPY 169
D L T IV GT++++ YL++ + L + + PLLL + Y+ LD +P
Sbjct: 40 DKALTTQIVYGTVQYKLYLEYQLKSLVQTKLKEDYLWPLLL----MSAYQYFFLDKIPTA 95
Query: 170 AVVDENVRLAKVALRPGAGN--LVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIY 227
++VDE +LAK G+ + LVNGILR LV + LP ++ + ++ Y
Sbjct: 96 SIVDEANKLAKSYSPKGSQSYRLVNGILRSLV--RRGEILP------EEKDAVKYMSIKY 147
Query: 228 SHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPH 287
S+P W+V+ + G+ + I ++ N S+R +++ D ++ KL +
Sbjct: 148 SYPQWLVKYCLDHFGKAKTISILQAGNMPSVNSIRI---ADMSKKDEILH----KLSTEY 200
Query: 288 ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPG 347
++S+ V ++ + L K+GL +QD +A LVV + + + ++D C+APG
Sbjct: 201 KISISNLTNHNVNLDHGSITNSQLFKDGLITIQDSAASLVVDAFNFKGDEKVLDACSAPG 260
Query: 348 GKTLYMASCLSGQGLVYAIDINKGRLRILNET-AKLHQVNSVIRTIHADLRTFADNSTVK 406
GKT +A L+ G V+A+DI++ +L ++ +T +LHQ +I + +
Sbjct: 261 GKTAQIAEYLT-TGKVFALDIHQKKLNLVKQTLTRLHQDQKLIMKALDARKVNEYFFGQQ 319
Query: 407 CDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTC 466
DK+L+DAPCSGLG++ ++ ++R+ +++ED++ L +Q +LD + L+ G LVYSTC
Sbjct: 320 FDKILVDAPCSGLGLIRRKPEVRYEKQMEDLKHLSEIQYNILDHVAGLLAENGELVYSTC 379
Query: 467 SIDPEENEERVEAFLLRHPEFSIDPAD----------GLVPSDFVTKHGFFFSDPIK 513
+I EENE+ V+ FL HP+FS+ P + + P D+ GFF + +K
Sbjct: 380 TISIEENEDVVKRFLTNHPDFSLAPFEVGNLSKCKMIKIFPDDY-NSDGFFIAKFVK 435
>gi|319892211|ref|YP_004149086.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
pseudintermedius HKU10-03]
gi|317161907|gb|ADV05450.1| Ribosomal RNA small subunit methyltransferase B [Staphylococcus
pseudintermedius HKU10-03]
Length = 433
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 130/423 (30%), Positives = 220/423 (52%), Gaps = 40/423 (9%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTF--SSMEPLLLQILRIGFY 159
+T L+ D L T++V GTI+ + LD+ + K F + ++ + ++L + Y
Sbjct: 30 LQTYPLNPADRGLYTELVYGTIKRKLTLDYYL-------KPFVKTKIKGWVRRLLWMSLY 82
Query: 160 EIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRA 218
+ + LD +P +A+++E V +AK GN VN ILR++ S PLP + +
Sbjct: 83 QFLYLDKVPTHALINEAVNIAKKRGGAQTGNTVNAILRQM------TSQPLPDITAI-KK 135
Query: 219 QARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQL 278
Q L+ YS P W+++ W + G + + + N P +R +T + + QL
Sbjct: 136 QPERLSIQYSIPTWIIKHWLTHFG-ADTTEAIAANLLLPGTQTVRVNRTQITVDEAIEQL 194
Query: 279 NLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQS 338
V + H+D + V V+ + L ++GL ++QD+S+ V ++ QPG +
Sbjct: 195 RAEGFDV--QSDTHIDVCLHVSG--HGVMTSELFQKGLISIQDKSSMFVAEYMELQPGDA 250
Query: 339 IVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETA-KLHQVNSVIRTIHADLR 397
++D C+APGGK ++A L+GQG V A D++ ++++++ KLH IR + D
Sbjct: 251 VLDSCSAPGGKACHIAEILNGQGTVLATDVHAHKIQLIDHNIRKLHLTG--IRAMQHDAT 308
Query: 398 TFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKP 457
D + DKVLLDAPCSGLGVL + ++++ +D++ L LQ ++D S +K
Sbjct: 309 QPYDQ---QFDKVLLDAPCSGLGVLRHKPEIKYVITPQDVKGLVDLQLRIIDNVSKHLKA 365
Query: 458 GGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADG-----------LVPSDFVTKHGF 506
GG +VYSTC+I+ EN+ + FL HP+F DP + L+P D + GF
Sbjct: 366 GGTMVYSTCTIEQLENDNVIYTFLKSHPDFEFDPIEDPRTHEPVKTLQLLPQD-MHADGF 424
Query: 507 FFS 509
F +
Sbjct: 425 FIT 427
>gi|325913038|ref|ZP_08175411.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
iners UPII 60-B]
gi|325477718|gb|EGC80857.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
iners UPII 60-B]
Length = 437
Score = 187 bits (474), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 127/417 (30%), Positives = 222/417 (53%), Gaps = 35/417 (8%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPY 169
D L T IV GT++++ YL++ + L + + PLLL + Y+ LD +P
Sbjct: 40 DKALTTQIVYGTVQYKLYLEYQLKSLVQTKLKEDYLWPLLL----MSAYQYFFLDKIPTA 95
Query: 170 AVVDENVRLAKVALRPGAGN--LVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIY 227
++VDE +LAK G+ + LVNGILR LV + LP ++ + ++ Y
Sbjct: 96 SIVDEANKLAKSYSPKGSQSYRLVNGILRSLV--RRGEILP------EEKDAVKYMSIKY 147
Query: 228 SHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPH 287
S+P W+V+ + G+ + I ++ N S+R +++ D ++ KL +
Sbjct: 148 SYPQWLVKYCLDHFGKTKTISILQAGNMPSVNSIRI---ADMSKKDEILH----KLATEY 200
Query: 288 ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPG 347
++S+ V ++ + L K+GL +QD +A LVV + + + ++D C+APG
Sbjct: 201 KISISNLTNHNVNLDHGSITNSQLFKDGLITIQDSAASLVVDAFNFKGDEKVLDACSAPG 260
Query: 348 GKTLYMASCLSGQGLVYAIDINKGRLRILNET-AKLHQVNSVIRTIHADLRTFADNSTVK 406
GKT +A L+ G V+A+DI++ +L ++ +T +LHQ +I + +
Sbjct: 261 GKTAQIAEYLT-TGKVFALDIHQKKLNLVKQTLTRLHQDQKLIMKALDARKVNEYFFGQQ 319
Query: 407 CDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTC 466
DK+L+DAPCSGLG++ ++ ++R+ +++ED++ L +Q +LD + L+ G LVYSTC
Sbjct: 320 FDKILVDAPCSGLGLIRRKPEVRYEKQMEDLKHLSEIQYNILDHVAGLLAENGELVYSTC 379
Query: 467 SIDPEENEERVEAFLLRHPEFSIDPAD----------GLVPSDFVTKHGFFFSDPIK 513
+I EENE+ V+ FL HP+FS+ P + + P D+ GFF + +K
Sbjct: 380 TISIEENEDVVKRFLTNHPDFSLAPFEVGNLSNCKMIKIFPDDY-NSDGFFIAKFVK 435
>gi|429505125|ref|YP_007186309.1| 16S rRNA methyltransferase B [Bacillus amyloliquefaciens subsp.
plantarum AS43.3]
gi|429486715|gb|AFZ90639.1| 16S rRNA methyltransferase B [Bacillus amyloliquefaciens subsp.
plantarum AS43.3]
Length = 447
Score = 187 bits (474), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 121/391 (30%), Positives = 213/391 (54%), Gaps = 18/391 (4%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
+T L D+D L+T++V GT++ + LD+++ + + ++ ++Q+LR+ Y++
Sbjct: 32 IKTNTLSDQDRGLLTELVYGTLQNKIALDYMLKPFI---RKPNKVKLWVIQLLRLSAYQM 88
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
L+ +P A + E V +AK G + VNGILR L + + ++E
Sbjct: 89 EYLEKIPDRAAIHEAVEIAKKRGHKGIASFVNGILRSL---QREGAPSFAEIED----PV 141
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
L+T SHP W+V+ W + G E A K+ + P +LR N K R ++ ++
Sbjct: 142 LRLSTETSHPEWLVKEWVEAYGFEAAEKICRIHLIPPKQTLRVNHIKS-DRETVLNEMEN 200
Query: 281 LKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIV 340
L+ L D +K + N + G ++QDES+ LV +DP+PG++++
Sbjct: 201 AGLEA-EAGDLSPDAIKLLKGSIANT---AFFQNGGVSIQDESSMLVARALDPKPGETVL 256
Query: 341 DCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 400
D CAAPGGK+ ++A + +G + ++D+++ +++++ E A+ + ++I D R
Sbjct: 257 DACAAPGGKSAHIAELMENEGSLTSLDLHRHKVKLIKEGAERLGL-TIIDAQTMDARKAG 315
Query: 401 D-NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGG 459
+ + D+VL+DAPCSG GV+ ++ D+++ + ED L +Q +L + LVK GG
Sbjct: 316 EVFGAERFDRVLVDAPCSGFGVIRRKPDMKYTKTPEDSRRLSEIQLGILREIAPLVKKGG 375
Query: 460 VLVYSTCSIDPEENEERVEAFLLRHPEFSID 490
LVYSTC++D ENEE + AF+ HPEF D
Sbjct: 376 TLVYSTCTMDRTENEEVMHAFIQEHPEFEPD 406
>gi|317056478|ref|YP_004104945.1| sun protein [Ruminococcus albus 7]
gi|315448747|gb|ADU22311.1| sun protein [Ruminococcus albus 7]
Length = 431
Score = 187 bits (474), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 134/429 (31%), Positives = 218/429 (50%), Gaps = 41/429 (9%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD 165
D D RD + + + G I R LD +I L + K S + L ILR G Y++ +D
Sbjct: 34 DFDKRDKKFIAALFYGVIERRLTLDAIIVDLSKNPK--SKLNYTLRNILRCGLYQLKYMD 91
Query: 166 -MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P A VDE+V LAK P A NG+LR+ + S LPK ++ LA
Sbjct: 92 SVPDNAAVDESVELAKKCRNPAAPGFTNGLLREFI----RRSKELPKTN----SETERLA 143
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQ 284
YS P W+V++W+ G++ + L+ + +++ N+ G L M L+
Sbjct: 144 LEYSCPEWLVKKWSFEYGKDRCLSLLKTSLGQAPTTIKVNNLSGGIEDTLDM---LIADG 200
Query: 285 VPHELSLHLDEFIRVKTGLQNVIQAGLL------KEGLCAVQDESAGLVVAVVDPQPGQS 338
V E S L+ + NV AG + ++G VQD ++ L +DPQPG
Sbjct: 201 VTFERSKILEYAV-------NVANAGAIEKTEAYRQGKFHVQDIASQLCCKALDPQPGDI 253
Query: 339 IVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT 398
++D C+APGGKT +A ++ +G V A D++ R++++ A+ + V ++ + +
Sbjct: 254 VLDLCSAPGGKTFTIAEMMNNEGKVLAFDLHPNRVKLIRSGAERLGLTCVTADVN-NAKI 312
Query: 399 FADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPG 458
F + V DKVL+DAPCSGLGV+ ++ ++++ + + + L +Q ++LD AS VK
Sbjct: 313 FNSDIPV-ADKVLVDAPCSGLGVIRRKPEIKY-KDPSEFDRLPEIQGDILDTASKYVKAN 370
Query: 459 GVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFS-DPIKHSLD 517
G LVYSTC++ EN++ + FL H +F VP++ + F + P + D
Sbjct: 371 GTLVYSTCTVSKAENDDVIRKFLGSHKDF--------VPAE--DEETFMQTITPDMYGSD 420
Query: 518 GAFAARLVR 526
G F A+L R
Sbjct: 421 GFFIAKLKR 429
>gi|187735067|ref|YP_001877179.1| sun protein [Akkermansia muciniphila ATCC BAA-835]
gi|187425119|gb|ACD04398.1| sun protein [Akkermansia muciniphila ATCC BAA-835]
Length = 412
Score = 187 bits (474), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 143/427 (33%), Positives = 209/427 (48%), Gaps = 59/427 (13%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDM 166
L D LV +V +R + +LDH+I L K +E L IL++G ++ L M
Sbjct: 39 LPSADRHLVQALVFSVLRNQTWLDHVIGTL---RKGRLDVEARL--ILQLGLSQLFLLGM 93
Query: 167 PPYAVVDENVRLAKVALRPGAGNLVNGILRKLV-----LLKDNNSLPLPKLEGNDRAQAR 221
+A V E V LA V LR LVN ILR + +L++ LPL
Sbjct: 94 ADHAAVYETVNLASVRLR----GLVNAILRNALRREKTILEEREKLPL------------ 137
Query: 222 ALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLL 281
+ YS P W+VRRWT+ +G + A L+ WNN+ P +RAN +M +
Sbjct: 138 --SIHYSTPAWLVRRWTEQMGPQMARDLLRWNNTTPRLYVRANP---------LMPMK-- 184
Query: 282 KLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVD 341
+P L+ LD + ++ ++ +K G V D S + ++ PQPG+ I+D
Sbjct: 185 --NIPASLA-PLDRAPGWFS-VEGLLPLEEIKTGSLYVADPSTRYSIDLLAPQPGEEILD 240
Query: 342 CCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD 401
CAAPGGK+ + + G+ + A D+++ RL L E Q +S +RT AD
Sbjct: 241 ACAAPGGKSAAIIAATGGKAHLTATDLHEHRLPTLKENLD-RQGSSFVRTAQADWSLPCR 299
Query: 402 NSTV-KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGV 460
+ D VLLD PCS GV+ +R D+RW E++ L LQ +L+ AS VKPGG
Sbjct: 300 TEWKGRFDAVLLDVPCSNTGVIQRRVDVRWRLTPEEIRRLTALQKTILENASRAVKPGGR 359
Query: 461 LVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAF 520
LVYSTCSID EE+ + FL HPE+++ ++P + DGA+
Sbjct: 360 LVYSTCSIDAEEDGLLIRDFLQNHPEWTLKEEKLILPHE--------------EKSDGAY 405
Query: 521 AARLVRA 527
AA L+ A
Sbjct: 406 AALLICA 412
>gi|309803103|ref|ZP_07697200.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
iners LactinV 11V1-d]
gi|315653701|ref|ZP_07906621.1| RNA methyltransferase Sun [Lactobacillus iners ATCC 55195]
gi|308164611|gb|EFO66861.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
iners LactinV 11V1-d]
gi|315489063|gb|EFU78705.1| RNA methyltransferase Sun [Lactobacillus iners ATCC 55195]
Length = 437
Score = 187 bits (474), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 131/421 (31%), Positives = 225/421 (53%), Gaps = 43/421 (10%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPY 169
D L T IV GT++++ YL++ + L + + PLLL + Y+ LD +P
Sbjct: 40 DKALTTQIVYGTVQYKLYLEYQLKSLVQTKLKEDYLWPLLL----MSAYQYFFLDKIPTA 95
Query: 170 AVVDENVRLAKVALRPGAGN--LVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIY 227
++VDE +LAK G+ + LVNGILR LV + LP ++ + ++ Y
Sbjct: 96 SIVDEANKLAKSYSPKGSQSYRLVNGILRSLV--RRGEILP------EEKDAVKYMSIKY 147
Query: 228 SHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPH 287
S+P W+V+ + G+ + I ++ N S+R +++ D ++ KL +
Sbjct: 148 SYPQWLVKYCLDHFGKTKTISILQAGNMPSVNSIRI---ADMSKKDEILH----KLATEY 200
Query: 288 ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPG 347
++S+ V ++ + L K+GL +QD +A LVV + + + ++D C+APG
Sbjct: 201 KISISNLTNHNVNLDHGSITNSQLFKDGLITIQDSAASLVVDAFNFKGDEKVLDACSAPG 260
Query: 348 GKTLYMASCLSGQGLVYAIDINKGRLRILNET-AKLHQVNSVIRTIHADLRT----FADN 402
GKT +A L+ G V+A+DI++ +L ++ +T +LHQ +I D R F D
Sbjct: 261 GKTAQIAEYLTT-GKVFALDIHQKKLNLVKQTLNRLHQDQKLIMKA-LDARKVNEYFFDQ 318
Query: 403 STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLV 462
+ DK+L+DAPCSGLG++ ++ ++R+ +++ED++ L +Q +LD + L+ G LV
Sbjct: 319 ---QFDKILVDAPCSGLGLIRRKPEVRYEKQMEDLKHLSEIQYNILDHVAGLLAENGELV 375
Query: 463 YSTCSIDPEENEERVEAFLLRHPEFSIDPAD----------GLVPSDFVTKHGFFFSDPI 512
YSTC+I EENE+ V+ FL HP+FS+ P + + P D+ GFF + +
Sbjct: 376 YSTCTISIEENEDVVKRFLTNHPDFSLAPFEVGNLSKCKMIKIFPDDY-NSDGFFIAKFV 434
Query: 513 K 513
K
Sbjct: 435 K 435
>gi|110803437|ref|YP_699027.1| sun protein [Clostridium perfringens SM101]
gi|110683938|gb|ABG87308.1| ribosomal RNA small subunit methyltransferase B [Clostridium
perfringens SM101]
Length = 442
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 133/436 (30%), Positives = 229/436 (52%), Gaps = 29/436 (6%)
Query: 96 VERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILR 155
+E F + D+D +D L+T++V GTI++++ +D ++ D ++ ++ ILR
Sbjct: 23 IEINKQFASNDIDPKDKGLITEVVYGTIKYKKMIDIILSNFVAD---IGKIDESVVNILR 79
Query: 156 IGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEG 214
Y++ LD +PPYA+V+E V L K P VNG+LR L++ N L
Sbjct: 80 SAIYQMKFLDRVPPYAIVNEAVNLTK-ETEPNLAKFVNGVLRNY--LRNENKNFKVGLRN 136
Query: 215 NDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADL 274
N+ AL +S WM+ + K G+++A++++ N+ P ++R N+ K D
Sbjct: 137 NE-----ALCYDFSFDRWMIEMFIKQYGKDDALRILRGLNTIPYVTVRVNTCKA--DYDE 189
Query: 275 VMQLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQ 334
V + L + E E I +K G + + L +EGL VQDESA LV + D +
Sbjct: 190 VYE-RLEEEGYDIEEGAFSPEAIIIKKG-SAIEKNKLYQEGLITVQDESAMLVAPLFDLK 247
Query: 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETA-KLHQVNSVIRTIH 393
+ ++D C+APG K ++ + +G V A DI+ +L ++ E +L N +
Sbjct: 248 DDEQVMDLCSAPGTKATHIGELMMNKGKVVAFDIHDHKLTLIKENIDRLGLTNVEVEL-- 305
Query: 394 ADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASL 453
D D+VLLD PCSGLG++ K+ +++WN++ D+ E+ +Q E+L A
Sbjct: 306 GDATKINSKYINWADRVLLDVPCSGLGIIRKKPEIKWNKKNNDLTEVVKVQKEILKNAWN 365
Query: 454 LVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSID-----PADGLVPSDFVTKHGFFF 508
++ GG LVYSTC+++ +ENEE ++ F+ ++ + ++ AD +V +D +G
Sbjct: 366 YLREGGELVYSTCTLNKKENEEVIDWFVEKNSDCEVEKVFLGKADNVVYND----NGSVT 421
Query: 509 SDPIKHSLDGAFAARL 524
P K+ +DG F A+L
Sbjct: 422 ILPNKY-MDGFFIAKL 436
>gi|259501638|ref|ZP_05744540.1| RNA methyltransferase Sun [Lactobacillus iners DSM 13335]
gi|302191155|ref|ZP_07267409.1| SUN protein [Lactobacillus iners AB-1]
gi|312874589|ref|ZP_07734613.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
iners LEAF 2053A-b]
gi|325911750|ref|ZP_08174157.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
iners UPII 143-D]
gi|259166923|gb|EEW51418.1| RNA methyltransferase Sun [Lactobacillus iners DSM 13335]
gi|311089819|gb|EFQ48239.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
iners LEAF 2053A-b]
gi|325476516|gb|EGC79675.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
iners UPII 143-D]
Length = 437
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 127/417 (30%), Positives = 222/417 (53%), Gaps = 35/417 (8%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPY 169
D L T IV GT++++ YL++ + L + + PLLL + Y+ LD +P
Sbjct: 40 DKALTTQIVYGTVQYKLYLEYQLKSLVQTKLKEDYLWPLLL----MSAYQYFFLDKIPTA 95
Query: 170 AVVDENVRLAKVALRPGAGN--LVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIY 227
++VDE +LAK G+ + LVNGILR LV + LP ++ + ++ Y
Sbjct: 96 SIVDEANKLAKSYSPKGSQSYRLVNGILRSLV--RRGEILP------EEKDAVKYMSIKY 147
Query: 228 SHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPH 287
S+P W+V+ + G+ + I ++ N S+R +++ D ++ KL +
Sbjct: 148 SYPQWLVKYCLDHFGKTKTISILQAGNMPSVNSIRI---ADMSKKDEILH----KLATEY 200
Query: 288 ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPG 347
++S+ V ++ + L K+GL +QD +A LVV + + + ++D C+APG
Sbjct: 201 KISISNLTNHNVNLDHGSITNSQLFKDGLITIQDSAASLVVDAFNFKGDEKVLDACSAPG 260
Query: 348 GKTLYMASCLSGQGLVYAIDINKGRLRILNET-AKLHQVNSVIRTIHADLRTFADNSTVK 406
GKT +A L+ G V+A+DI++ +L ++ +T +LHQ +I + +
Sbjct: 261 GKTAQIAEYLT-TGKVFALDIHQKKLNLVKQTLTRLHQDQKLIMKALDARKVNEYFFGQQ 319
Query: 407 CDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTC 466
DK+L+DAPCSGLG++ ++ ++R+ +++ED++ L +Q +LD + L+ G LVYSTC
Sbjct: 320 FDKILVDAPCSGLGLIRRKPEVRYEKQMEDLKHLSEIQYNILDHVAGLLAENGELVYSTC 379
Query: 467 SIDPEENEERVEAFLLRHPEFSIDPAD----------GLVPSDFVTKHGFFFSDPIK 513
+I EENE+ V+ FL HP+FS+ P + + P D+ GFF + +K
Sbjct: 380 TISIEENEDVVKRFLTNHPDFSLAPFEVGNLSKCKMIKIFPDDY-NSDGFFIAKFVK 435
>gi|258508664|ref|YP_003171415.1| tRNA and rRNA cytosine-C5-methytransferase [Lactobacillus rhamnosus
GG]
gi|385828325|ref|YP_005866097.1| RNA methyltransferase [Lactobacillus rhamnosus GG]
gi|257148591|emb|CAR87564.1| tRNA and rRNA cytosine-C5-methytransferase (sun protein)
[Lactobacillus rhamnosus GG]
gi|259649970|dbj|BAI42132.1| RNA methyltransferase [Lactobacillus rhamnosus GG]
Length = 446
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 146/458 (31%), Positives = 227/458 (49%), Gaps = 48/458 (10%)
Query: 85 GKGSGDNEMGYVERTLG--FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKT 142
GKG GY TL LD RD L+T++V G I+ + LD+L+ + +
Sbjct: 19 GKG------GYSNLTLDHVITKYQLDSRDAGLLTNVVYGVIQHQLTLDYLLAPFVKNRQ- 71
Query: 143 FSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLL 201
++ + +L+ Y++ LD +P AV ++ +AK G V G+LR+
Sbjct: 72 ---LDTWVRCLLQTAVYQLQYLDKVPARAVFFDSTEIAKKLGHQGVAKFVTGVLRQ---- 124
Query: 202 KDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSL 261
+ P P + + LA S PVW+V++ LG+ + K++ N S+
Sbjct: 125 AQRSGYPDPMTIADP---IQRLAITSSTPVWLVKKLQAQLGETKTAKILAAINQPAHASI 181
Query: 262 RANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLK------EG 315
R N+ K T A L L L+ Q P L E GL V G L +G
Sbjct: 182 RVNTTK-TTAAAL---LKALQPQFPA-----LKESPLTPVGL--VAPGGHLAGTREFADG 230
Query: 316 LCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQ--GLVYAIDINKGRL 373
L +QDES+ LV +D QPG ++D CAAPGGKT ++A L G V A+D++ ++
Sbjct: 231 LYTMQDESSMLVAPSLDVQPGDQVLDACAAPGGKTTHIAQYLDPDQGGRVTALDLHANKV 290
Query: 374 RILNETAKLHQVNSVIRTIHADLRTFADNSTVKC-DKVLLDAPCSGLGVLSKRADLRWNR 432
R++ + AK ++ + D R A N + DK+L+DAPCSGLG++ ++ ++++ +
Sbjct: 291 RLIQQNAKRLDLDDRVAAQVMDARQVAANFAAESFDKILVDAPCSGLGLIRRKPEIKYTK 350
Query: 433 RLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPA 492
+ ED++ L+ +Q +LD+ + +K GG L YSTC++ EEN++ V FL HPEF P
Sbjct: 351 QPEDLQHLQKIQLAILDSVAPTLKIGGRLTYSTCTMVKEENQDVVAHFLATHPEFEQVPV 410
Query: 493 DGLVPSDFVTKHGF----FFSDPIKHSLDGAFAARLVR 526
L P HG F D + DG F A L+R
Sbjct: 411 LTLKP--LAKTHGAPALQLFPD--DYDTDGFFIASLIR 444
>gi|95928560|ref|ZP_01311307.1| sun protein [Desulfuromonas acetoxidans DSM 684]
gi|95135350|gb|EAT17002.1| sun protein [Desulfuromonas acetoxidans DSM 684]
Length = 479
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 132/383 (34%), Positives = 202/383 (52%), Gaps = 14/383 (3%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
LD RD L T++V G +R R LD + L + + ++P +L++LR+G Y++ LD
Sbjct: 60 LDPRDRALATELVYGVLRRRGNLDFI--LKAYSRQPLKKLQPKVLRLLRLGIYQLCYLDR 117
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P AVV V LA+ LVNG+LR + + P P+ R L
Sbjct: 118 IPDRAVVHSMVELARRCGLERVSGLVNGVLRSYLREPNRVVWPDPR-----RDTQGWLEH 172
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
S P W+ +RW G E A+ L S P ++R N+ K +TR V QL + +
Sbjct: 173 GLSLPHWLAQRWLVQYGAEGAMALAESQLSAPPVTVRVNTLK-MTRNAFVAQLK--QRDI 229
Query: 286 PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAA 345
E + E + V ++ + +EG VQDE++ L+ ++ +PGQ ++D CAA
Sbjct: 230 AAEPTRFAPEGV-VLPHAGDLQRLPGREEGWYQVQDEASMLIAHLLSVEPGQRLLDGCAA 288
Query: 346 PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADL-RTFADNST 404
PGGKT ++A+ + + A+D++ RL IL + AK IRT+ D+ + D S
Sbjct: 289 PGGKTTHLAALTDNRSEILALDLHSQRLEILQQGAKRLGCQQ-IRTLACDMTQPCEDLSA 347
Query: 405 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464
D+VL+DAPCSGLGVL + + RW R+ D++ L Q ++L A+ LV PGG+L+YS
Sbjct: 348 GGFDRVLIDAPCSGLGVLRRNPESRWRRKQTDIKVLAKTQRQILHQAAELVVPGGLLLYS 407
Query: 465 TCSIDPEENEERVEAFLLRHPEF 487
C+ PEE+ V FL HP +
Sbjct: 408 LCTTTPEESTAVVADFLAHHPMY 430
>gi|159902963|ref|YP_001550307.1| Sun protein (Fmu protein) [Prochlorococcus marinus str. MIT 9211]
gi|159888139|gb|ABX08353.1| Sun protein (Fmu protein) [Prochlorococcus marinus str. MIT 9211]
Length = 432
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 127/406 (31%), Positives = 214/406 (52%), Gaps = 25/406 (6%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSME--PLLLQILRIGFYEIVKLD-MP 167
D L T+I G+IR R+YLD I L S+++ P L +L IG Y+I ++ +P
Sbjct: 36 DKALTTEIAYGSIRQRKYLDSWIDNLAK----ISALKQPPRLRWLLHIGLYQIFLMERIP 91
Query: 168 PYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKD-NNSLPLPKLEGNDRAQARALATI 226
AVV+ V+LAK ++VNGILR + +++ LP + AQ+
Sbjct: 92 VSAVVNTTVQLAKNNNLNKLSSVVNGILRNAIRIREAGQGLPFKSNASEELAQS------ 145
Query: 227 YSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRA--DLVMQLNLLKLQ 284
+S P+W+ + G++ A + + N P+F LR N K R+ ++ + + L
Sbjct: 146 FSIPLWLANSLITWRGEQGAKSIAMAFNQPPAFDLRINRCKTNPRSVQEIFDKFGITSLP 205
Query: 285 VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 344
+ S +++ +G+ ++ + + G +VQD S+ + +++ +PG I+D C+
Sbjct: 206 IKGCTS-----GLQITSGMGDLRKWPGYEGGEWSVQDRSSQWIAPLLEAEPGDRILDACS 260
Query: 345 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD--- 401
APGGK ++A + G ++A+D + RL+ ++E A +NS ++ + AD D
Sbjct: 261 APGGKATHLAELIDDNGEIWAVDRSPKRLQKVSENATRLGLNS-LKCLAADASMLLDCKP 319
Query: 402 NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVL 461
+ ++L+DAPCSGLG LS+ D RW E ++EL ILQ LL L+ PGG +
Sbjct: 320 HWKGYFQRILVDAPCSGLGTLSRNPDARWRMTPEKIDELIILQARLLRGVLPLLSPGGRI 379
Query: 462 VYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFF 507
VYSTC++ PEEN ++V FL HP+ + + + P D + GF+
Sbjct: 380 VYSTCTMHPEENFKQVGEFLALHPKVKLKYQNQIWPDDAQSGDGFY 425
>gi|385799660|ref|YP_005836064.1| sun protein [Halanaerobium praevalens DSM 2228]
gi|309389024|gb|ADO76904.1| sun protein [Halanaerobium praevalens DSM 2228]
Length = 449
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 121/386 (31%), Positives = 210/386 (54%), Gaps = 19/386 (4%)
Query: 108 DDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-M 166
D RD L T+I G IR + YLD++I + + M+ +L LRIG Y++ LD +
Sbjct: 34 DKRDKNLFTEIYYGVIRNKLYLDYIINQFS--KTSLLKMDSEVLMGLRIGVYQLFFLDKV 91
Query: 167 PPYAVVDENVRLAKVAL---RPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARAL 223
P A + E+V K+ L + GA + NG+LR + + NS+ LP ++ + L
Sbjct: 92 PARAAIYESVEAVKIILPASQKGAISFTNGVLRNIN--RKRNSIKLP---AKNKDPEKHL 146
Query: 224 ATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKL 283
+ YS+P+W+V+R+ K G ++ K++ N R NS K +T+A + L+ L
Sbjct: 147 SIKYSYPMWLVKRFIKQYGFNKSEKILKAGNKRAEVIYRHNSLK-MTKAQFIELLDAADL 205
Query: 284 QVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCC 343
+ S L+ F ++K + N Q + K G +Q SAGL ++DP ++D
Sbjct: 206 EYE---STFLESFYKLKK-VNNPAQTKVFKRGGAYIQGTSAGLASLLLDPSENMEVLDLA 261
Query: 344 AAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS 403
AAPGGKT ++A+ ++ G + A+DI++ RL ++ E V +V AD + DN
Sbjct: 262 AAPGGKTSHLAALMNNTGQIKALDISQSRLDLVQENLLRLGVKNV-SLKKADASKYQDNK 320
Query: 404 TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463
K D++L D PCSGLG+++ + +++W++ +E++ LQ ++L+ +K GG L+Y
Sbjct: 321 --KYDRILADLPCSGLGLIASKPEIKWDKNENIIEKMAKLQYKILNNNLNKLKSGGQLLY 378
Query: 464 STCSIDPEENEERVEAFLLRHPEFSI 489
STC++ EEN++ ++ L + + +
Sbjct: 379 STCTLAKEENQDLIKRILKENKAYKL 404
>gi|293374996|ref|ZP_06621291.1| ribosomal RNA small subunit methyltransferase B [Turicibacter
sanguinis PC909]
gi|325843368|ref|ZP_08167951.1| ribosomal RNA small subunit methyltransferase B [Turicibacter sp.
HGF1]
gi|292646406|gb|EFF64421.1| ribosomal RNA small subunit methyltransferase B [Turicibacter
sanguinis PC909]
gi|325489397|gb|EGC91770.1| ribosomal RNA small subunit methyltransferase B [Turicibacter sp.
HGF1]
Length = 444
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 128/422 (30%), Positives = 222/422 (52%), Gaps = 36/422 (8%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD 165
DL +D +T++V GT++ ++ L+ + ++ + ++++ Y+I+ LD
Sbjct: 34 DLTIQDKNFMTELVYGTLQHQQLLNFYATPFFN-----GKVKGWIRILIQMTLYQILYLD 88
Query: 166 -MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P +A + E V +AK G LVN ILR+++ PL L+ A LA
Sbjct: 89 SVPEHAAISEAVNIAKKRGGQFNGKLVNAILREMM------RNPLSNLQ-EIEDDAERLA 141
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQ 284
T SHP+W+++ W K G E+ ++ NN + ++R N KG T+ +L +L +Q
Sbjct: 142 TKTSHPLWLIKLWIKQFGMEKTEQMANANNERVNVTIRVNGVKG-TKEELKQKLEEEGIQ 200
Query: 285 VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 344
+ L D + K NVI+ ++G VQDES+ LV + P+ ++D C+
Sbjct: 201 C-RDGFLSPDALVITKG---NVIKTKAFEQGWFYVQDESSMLVARALKPKHHTKVLDTCS 256
Query: 345 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNST 404
APGGKT ++A + G+VYA DI +++++ + K + +V+ + + +
Sbjct: 257 APGGKTTHVAEMMRQTGMVYAHDIYPHKIKLIEDNVKRLGLKNVVVNLQDATKLTECYPS 316
Query: 405 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464
D VL+DAPCSGLG+L + +++ ++ ED++ + +Q E+L + LVK GG L+YS
Sbjct: 317 ESFDSVLVDAPCSGLGILRRHPEVKITKKPEDLDGVMAIQKEILKTVASLVKYGGTLLYS 376
Query: 465 TCSIDPEENEERVEAFLLRHPEFSID--------------PADGLV---PSDFVTKHGFF 507
TC+++ +EN++ VE FL HPEF +D + G+V P D+ T GFF
Sbjct: 377 TCTVNRKENDKMVEWFLREHPEFKLDQTLVERLPEVLNEQASTGMVQLFPGDYQTD-GFF 435
Query: 508 FS 509
+
Sbjct: 436 IA 437
>gi|420163445|ref|ZP_14670192.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIHLM095]
gi|420167574|ref|ZP_14674226.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIHLM087]
gi|394235134|gb|EJD80708.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIHLM095]
gi|394237602|gb|EJD83088.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIHLM087]
Length = 435
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 129/420 (30%), Positives = 220/420 (52%), Gaps = 38/420 (9%)
Query: 104 TKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTF--SSMEPLLLQILRIGFYEI 161
T +++ D L T++V GTI+ + LD+L+ K F + ++ + Q+L + Y+
Sbjct: 33 TNNINTVDKNLFTELVYGTIKRKYTLDYLL-------KPFIKTKIKSWVRQLLWMSLYQY 85
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
+ LD +P +A++ E V +AK GN+VNGILR ++ LP LE D +
Sbjct: 86 LYLDKIPNHAIIHEAVDIAKKRGGYHTGNIVNGILRTVM------RTELPSLEDIDDTKK 139
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
R +A YS P W+V W + G E+ + + ++RAN ++RA + ++
Sbjct: 140 R-IAIQYSLPKWIVDHWVTHFGVEKTENIARSFLEPVATTVRAN----ISRASIDSIISK 194
Query: 281 LKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIV 340
L+ + H + + +G+ V+ + KEG ++QD+S+ +V V++ ++
Sbjct: 195 LEQEGYHVKKDDMLPYCLHISGMP-VVNSNAFKEGYISIQDKSSMMVAYVMNLGRDDKVL 253
Query: 341 DCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 400
D C+APGGK +MA LS +G V A DI++ ++ ++ + K ++N+ I D
Sbjct: 254 DACSAPGGKACHMAEILSPEGHVDATDIHEHKINLIKQNIKKLKLNN-INAFQHDATEVY 312
Query: 401 DNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGV 460
D DK+L+DAPCSGLGVL + ++++++ ++ L LQ ++L+ +KPGG
Sbjct: 313 DKM---YDKILVDAPCSGLGVLRHKPEIKYSQSQNSIKSLVELQLKILENVKDNIKPGGT 369
Query: 461 LVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGL-----------VPSDFVTKHGFFFS 509
+VYSTC+I+ ENE + FL RH +F +P L +P DF GFF S
Sbjct: 370 IVYSTCTIEQMENENVIYTFLKRHKDFEFEPFQNLATGEQVKTLQILPQDF-NSDGFFIS 428
>gi|373452533|ref|ZP_09544446.1| ribosomal RNA small subunit methyltransferase B [Eubacterium sp.
3_1_31]
gi|371966402|gb|EHO83892.1| ribosomal RNA small subunit methyltransferase B [Eubacterium sp.
3_1_31]
Length = 415
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 131/421 (31%), Positives = 216/421 (51%), Gaps = 54/421 (12%)
Query: 105 KDLD---DRDLRLVTDIVGGTIRWRRYLDHLICLLCHDE-----KTFSSMEPLLLQILRI 156
K+LD +D L+T IV GT++ R LC + + E +L L +
Sbjct: 27 KELDKAEQKDKGLITTIVYGTLQNYR--------LCRYQWEDLVQKLPKAETAVL--LDM 76
Query: 157 GFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGN 215
Y++ +D +P YA+++E V +AK G LVN +L K++ LPK
Sbjct: 77 SAYQLFYMDKLPAYAIINEAVEIAKKHGGKKQGALVNAVLHKIM---QRGQRELPK---- 129
Query: 216 DRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLV 275
D Q A+ T SHP W++ W G EE + + +N + +RK R +L
Sbjct: 130 DTLQKLAIKT--SHPDWLINMWKAQYG-EETCRAICESNME--------TRKQCARVNL- 177
Query: 276 MQLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGL-------LKEGLCAVQDESAGLVV 328
+++ E L D +V G ++G+ ++QDE++ LV
Sbjct: 178 -------MRMSREEFLAQDNSFTAGQLASSVYYQGTSLAHTSWYEDGMLSIQDEASQLVA 230
Query: 329 AVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSV 388
VDPQP + I+D CAAPG K+ +MA + +G + DI++ R+ ++ + A Q++S
Sbjct: 231 YCVDPQPKERILDVCAAPGTKSTHMAELMQDEGEIICGDIHEHRVELIQQGADRLQLHS- 289
Query: 389 IRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELL 448
I + D D+VL D PCSG GVL++++D++++ + EDM+ L LQ +L
Sbjct: 290 IHPVVMDATKLQGLQEASFDRVLCDVPCSGYGVLARKSDIKYHMQSEDMDTLIPLQAAIL 349
Query: 449 DAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFF 508
+ AS +VK GG+LVYSTC+++ +ENE++VE FL +H EF++ + P +F + GF+
Sbjct: 350 EKASTMVKQGGILVYSTCTLNKKENEKQVETFLKKHEEFTLVSQRTIFPFEFGSD-GFYI 408
Query: 509 S 509
+
Sbjct: 409 A 409
>gi|227544379|ref|ZP_03974428.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus reuteri
CF48-3A]
gi|338202534|ref|YP_004648679.1| RNA methyltransferase Sun [Lactobacillus reuteri SD2112]
gi|227185642|gb|EEI65713.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus reuteri
CF48-3A]
gi|336447774|gb|AEI56389.1| RNA methyltransferase Sun [Lactobacillus reuteri SD2112]
Length = 449
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 134/425 (31%), Positives = 223/425 (52%), Gaps = 44/425 (10%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L D+D RL T+I+ G ++ + L++ + ++ ++P + +L Y+ L+
Sbjct: 41 LADKDRRLATNIIYGVLQHKLTLEYWLNGFVQGKR----LDPWVKTLLLSALYQYHYLER 96
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P +AV DE++ +AK PG V G+L ++ LP L D R L+
Sbjct: 97 VPDWAVTDESIEIAKRRGNPGIRKFVTGVLHAIL------RKGLPDLRQIDERDLR-LSI 149
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADL-VMQLNLLKLQ 284
S P W+V T+ G+E+ K++ N +R N + + DL ++ L
Sbjct: 150 ENSVPRWLVNELTREYGEEDTEKVLQSINEPAHQVIRVN----IVKTDLPTVKQTLDAAG 205
Query: 285 VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 344
+ ++ S + + G +I + L K G +QDESA L V + +PG ++D CA
Sbjct: 206 IEYQESQVAQNALVITKG--EIISSDLFKNGEITIQDESAMLAVESMHIEPGDKVLDACA 263
Query: 345 APGGKTLYMASCLSGQ-GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHA-DLRT---- 398
APGGKT+ +A L+ + G V A+DI++ ++R++ + A+ V + T HA D R
Sbjct: 264 APGGKTVQIAEALTNEDGHVDALDIHQHKVRLIEKNARRLGVEKRV-TAHALDAREVDQL 322
Query: 399 FADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPG 458
F D S DKVL+DAPCSG+G+L ++ ++R+ + L D ++L +Q +L+A + VK G
Sbjct: 323 FDDES---FDKVLVDAPCSGIGLLRRKPEIRYTKTLNDSKQLHKIQLAILNAIAAKVKKG 379
Query: 459 GVLVYSTCSIDPEENEERVEAFLLRHPEFSI--------------DPADGLVPSDFVTKH 504
G++ YSTC+I +EN++ V+AFL HPEF + P ++PSDF +
Sbjct: 380 GIITYSTCTILQQENDDTVQAFLAEHPEFELVKTTTARKVKDNRHSPTLTILPSDFDSD- 438
Query: 505 GFFFS 509
GFF S
Sbjct: 439 GFFVS 443
>gi|300854445|ref|YP_003779429.1| rRNA subunit cytosine-methyltransferase [Clostridium ljungdahlii
DSM 13528]
gi|300434560|gb|ADK14327.1| predicted rRNA subunit cytosine-methyltransferase [Clostridium
ljungdahlii DSM 13528]
Length = 443
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 128/421 (30%), Positives = 224/421 (53%), Gaps = 29/421 (6%)
Query: 114 LVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPL---LLQILRIGFYEIVKLD-MPPY 169
LVT+IV GT+++ +D ++ D+ SS++ + ++ ILRI Y++ LD +P +
Sbjct: 42 LVTEIVYGTLKYMYTIDTIL-----DDFIKSSLKKMNIDIVNILRISIYQLRYLDKIPEF 96
Query: 170 AVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSH 229
AVV+E V L+K + + LVNG+LR + KDN E D + L YS
Sbjct: 97 AVVNEAVELSKKKSKGLSK-LVNGVLRNYLRNKDN-----LHCEHKDN-KIDNLCFKYSF 149
Query: 230 PVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHEL 289
P WM + G+ ++ N P ++R N K ++ + LLK +
Sbjct: 150 PRWMTLLFIHQYGEAVGESILQSLNYIPKVTVRVNGLKIDYKS---VWDELLKNGYDIQK 206
Query: 290 SLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGK 349
E + + G N+ + L K+G VQDESA LV +VDP+ +++D C+APGGK
Sbjct: 207 GKICKEAVVINRG-SNIEENPLFKKGYITVQDESAMLVAHIVDPEENMTVLDMCSAPGGK 265
Query: 350 TLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDK 409
+ +MA + G++YA D+++ +LR + E A + + I+ D + + D+
Sbjct: 266 SCHMAELMKNTGVIYAYDLHENKLRFVEENANRMDIKN-IKCNKLDAEKYVEQFEATADR 324
Query: 410 VLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSID 469
VL+D PCSGLG++ K+ +++WN+ ++ + L +Q +++ AS VK GG L+YSTC+++
Sbjct: 325 VLIDVPCSGLGIVRKKPEIKWNKSMKSLNSLINVQRKIMLNASRYVKDGGKLIYSTCTLN 384
Query: 470 PEENEERVEAFLLRHPEFSIDPADGLVPSDF----VTKHGFFFSDPIKHSLDGAFAARLV 525
ENE+ + F+ +P++ ++ + DF K G+ P ++DG F A+++
Sbjct: 385 KSENEDNINWFIRENPQYKLEK---IYCGDFDNIIYHKEGYITILP-DDNMDGFFIAKMI 440
Query: 526 R 526
+
Sbjct: 441 K 441
>gi|222529034|ref|YP_002572916.1| Fmu (Sun) domain-containing protein [Caldicellulosiruptor bescii
DSM 6725]
gi|222455881|gb|ACM60143.1| Fmu (Sun) domain protein [Caldicellulosiruptor bescii DSM 6725]
Length = 406
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 125/411 (30%), Positives = 215/411 (52%), Gaps = 19/411 (4%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
F K +++D L ++V G +R++ +D+ I + + +L ILR+ YE+
Sbjct: 4 FHQKLKNEKDRALFVELVHGVLRYKSLIDYYINFVAKK----GVKDKRILNILRVATYEL 59
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
+ L+ +P YA V+E +A + P VN ILR ++ K+ L +++ D
Sbjct: 60 LFLEKIPEYATVNEACEVAS-KINPHLKAFVNAILRNIIRNKNQIEESLERIKDVDYKSY 118
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
L+ S+P +++ + G E+ IK++ + N+ P S++ N++K T + + Q L
Sbjct: 119 --LSIKLSYPRFLIDYLEESYGLEKTIKILEFLNTKPPQSIKINTKK--TNVNTLTQ-EL 173
Query: 281 LKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAV--VDPQPGQS 338
K +E++ +E + + G N+ + L KEG QD ++ LVV D + +
Sbjct: 174 EKNGFKYEINSRNNEIVLILKG--NIKETELYKEGYFYFQDLASSLVVKFNQEDFKRAKK 231
Query: 339 IVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT 398
++D CAAPGGKT A + G V A DIN+ +L IL E +++I ++
Sbjct: 232 VIDLCAAPGGKTFNCAEVIDG--FVVACDINEHKLDILRENILRLGFDNII-VAKSNAEV 288
Query: 399 FADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPG 458
F + K D V+ D PC+G G + K+ D++WN+ +D+E L LQ +LD ++ +K G
Sbjct: 289 FNPDFAEKFDIVIADLPCTGFGAIRKKPDIKWNKSYQDIENLHELQVRILDNSAGYLKRG 348
Query: 459 GVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFS 509
G+L YSTC++ +ENEE V FL +H +FS+ + P +F GFF +
Sbjct: 349 GILFYSTCTLGKKENEETVIEFLEKHKDFSLVSLTTIFPDEFEC-DGFFIA 398
>gi|386319520|ref|YP_006015683.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
pseudintermedius ED99]
gi|323464691|gb|ADX76844.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
pseudintermedius ED99]
Length = 433
Score = 186 bits (472), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 130/423 (30%), Positives = 219/423 (51%), Gaps = 40/423 (9%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTF--SSMEPLLLQILRIGFY 159
+T L+ D L T++V GTI+ + LD+ + K F + ++ + ++L + Y
Sbjct: 30 LQTYPLNPADRGLYTELVYGTIKRKLTLDYYL-------KPFVKTKIKGWVRRLLWMSLY 82
Query: 160 EIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRA 218
+ + LD +P +A+++E V +AK GN VN ILR++ S PLP + +
Sbjct: 83 QFLYLDKVPTHALINEAVNIAKKRGGAQTGNTVNAILRQM------TSQPLPDITAI-KK 135
Query: 219 QARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQL 278
Q L+ YS P W+++ W + G + + + N P +R +T + + QL
Sbjct: 136 QPERLSIQYSIPTWIIKHWLTHFG-ADTTEAIAANLLLPGTQTVRVNRTQITVDEAIEQL 194
Query: 279 NLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQS 338
V + H+D + V V+ + L ++GL ++QD+S+ V ++ QPG +
Sbjct: 195 RAEGFDV--QSDTHIDVCLHVSG--HGVMTSELFQKGLISIQDKSSMFVAEYMELQPGDA 250
Query: 339 IVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETA-KLHQVNSVIRTIHADLR 397
++D C+APGGK +MA L+ QG V A D++ ++++++ KLH IR + D
Sbjct: 251 VLDSCSAPGGKACHMAEILNDQGTVLATDVHAHKIQLIDHNIRKLHLTG--IRAMQHDAT 308
Query: 398 TFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKP 457
D + DKVLLDAPCSGLGVL + ++++ +D++ L LQ ++D S +K
Sbjct: 309 QPYDQ---QFDKVLLDAPCSGLGVLRHKPEIKYVITPQDVKGLVDLQLRIIDNVSKHLKA 365
Query: 458 GGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADG-----------LVPSDFVTKHGF 506
GG +VYSTC+I+ EN+ + FL HP+F DP + L+P D + GF
Sbjct: 366 GGTMVYSTCTIEQLENDNVIYTFLKSHPDFEFDPIEDPRTHEPVKTLQLLPQD-MHADGF 424
Query: 507 FFS 509
F +
Sbjct: 425 FIT 427
>gi|312871585|ref|ZP_07731677.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
iners LEAF 3008A-a]
gi|311092810|gb|EFQ51162.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
iners LEAF 3008A-a]
Length = 437
Score = 186 bits (472), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 127/417 (30%), Positives = 222/417 (53%), Gaps = 35/417 (8%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPY 169
D L T IV GT++++ YL++ + L + + PLLL + Y+ LD +P
Sbjct: 40 DKALTTQIVYGTVQYKLYLEYQLKSLVKTKLKEDYLWPLLL----MSAYQYFFLDKIPTA 95
Query: 170 AVVDENVRLAKVALRPGAGN--LVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIY 227
++VDE +LAK G+ + LVNGILR LV + LP ++ + ++ Y
Sbjct: 96 SIVDEANKLAKSYSPKGSQSYRLVNGILRSLV--RRGEILP------EEKDAVKYMSIKY 147
Query: 228 SHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPH 287
S+P W+V+ + G+ + I ++ N S+R +++ D ++ KL +
Sbjct: 148 SYPQWLVKYCLDHFGKTKTISILQAGNMPSVNSIRI---ADMSKKDEILH----KLATEY 200
Query: 288 ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPG 347
++S+ V ++ + L K+GL +QD +A LVV + + + ++D C+APG
Sbjct: 201 KISISNLTNHNVNLDHGSITNSQLFKDGLITIQDSAASLVVDAFNFKGDEKVLDACSAPG 260
Query: 348 GKTLYMASCLSGQGLVYAIDINKGRLRILNET-AKLHQVNSVIRTIHADLRTFADNSTVK 406
GKT +A L+ G V+A+DI++ +L ++ +T +LHQ +I + +
Sbjct: 261 GKTAQIAEYLT-TGKVFALDIHQKKLNLVKQTLTRLHQDQKLIMKALDARKVNEYFFGQQ 319
Query: 407 CDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTC 466
DK+L+DAPCSGLG++ ++ ++R+ +++ED++ L +Q +LD + L+ G LVYSTC
Sbjct: 320 FDKILVDAPCSGLGLIRRKPEVRYEKQMEDLKHLSEIQYNILDHVAGLLAENGELVYSTC 379
Query: 467 SIDPEENEERVEAFLLRHPEFSIDPAD----------GLVPSDFVTKHGFFFSDPIK 513
+I EENE+ V+ FL HP+FS+ P + + P D+ GFF + +K
Sbjct: 380 TISIEENEDVVKRFLTNHPDFSLAPFEVGNLSKCKMIKIFPDDY-NSDGFFIAKFVK 435
>gi|117926942|ref|YP_867559.1| sun protein [Magnetococcus marinus MC-1]
gi|117610698|gb|ABK46153.1| 16S rRNA m(5)C-967 methyltransferase [Magnetococcus marinus MC-1]
Length = 452
Score = 186 bits (472), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 134/424 (31%), Positives = 220/424 (51%), Gaps = 39/424 (9%)
Query: 117 DIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPPYAVVDENV 176
+IV GTIR L+ + +K + + +L Y+ + P ++ VDE V
Sbjct: 50 EIVVGTIRHMALLEATLTRFM--QKDLKAKHHYVRAVLLTALYQAQFMRTPIHSAVDEAV 107
Query: 177 RLAKVALRPGAGNL---VNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWM 233
+L K +P NL VN +LR+ + + L + + LAT YSHP+W+
Sbjct: 108 KLVK--QQPRDHNLSGFVNAVLRR------STEVELSTTWSAVKDPLKRLATRYSHPLWL 159
Query: 234 VRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVP----HEL 289
V+RW K LG E + N+ +LR ++ K VT AD + +++V E
Sbjct: 160 VKRWEKRLGMEATEARLAAANAQAPLTLRIHTPK-VTVADYLAAAKQAEIEVTVCPEAEE 218
Query: 290 SLHLDEFIRVKT--GLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPG 347
+L L + +V T G N G AVQD +A V ++ PQ G++I+D CAAPG
Sbjct: 219 TLMLPQGAKVATLPGYSN---------GWFAVQDRAAQAVARLLAPQAGEAILDACAAPG 269
Query: 348 GKTLYMASCLSGQGLVY-AIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVK 406
GK+ ++ + L G G+V A+D + RL + E + S ++ AD +
Sbjct: 270 GKSAHLVA-LGGAGVVITALDSAQQRLERMGENMARLGIRSQVKLRCADATQPIEG---L 325
Query: 407 CDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTC 466
D+ L+DAPC+G GV+ + D++W R + E+ Q ++L + + VKPGG+LVY+TC
Sbjct: 326 FDRALVDAPCTGTGVIRRHPDIKWRRNPSGLAEVVKQQQQILQSVAAAVKPGGLLVYATC 385
Query: 467 SIDPEENEERVEAFLLRHPEFSIDPAD----GLVPSDFVTKHGFFFSDPIKHSLDGAFAA 522
S++P+ENE++V FL HP++ P + G++P +++ G ++P H +DG +AA
Sbjct: 386 SLEPDENEQQVARFLKEHPQWKRLPLEAGMAGILP-EWIDSAGDLRTEPATHGVDGFYAA 444
Query: 523 RLVR 526
RL++
Sbjct: 445 RLIK 448
>gi|312867896|ref|ZP_07728101.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
parasanguinis F0405]
gi|311096651|gb|EFQ54890.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
parasanguinis F0405]
Length = 437
Score = 186 bits (472), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 131/422 (31%), Positives = 218/422 (51%), Gaps = 27/422 (6%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L D+D VT++V GT+ + L+ + + D + ++P L +L + Y++V LD
Sbjct: 39 LSDKDRSFVTEVVYGTVARKITLEWYLAHVIEDR---TKLDPWLYYLLMMSLYQLVYLDR 95
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P +A+V+E V++AK + G+ VN ILRKL L++ LP ++ R R +
Sbjct: 96 IPDHAIVNEAVQIAKCR-KEGSEKFVNAILRKL--LREG----LPAVDTIKRKNKR-YSV 147
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
YS PVW+V+ + G+E A + SL ++ + DL + L +L
Sbjct: 148 EYSLPVWLVKALIEEYGEERACDIFK--------SLYQRNKSSIRVIDLDEKEELAQLLE 199
Query: 286 PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAA 345
L ++ + L KEG +QDES+ LV +D Q + ++D CAA
Sbjct: 200 ATSSLLASSALVKEQGHFAG---HSLFKEGRITIQDESSQLVAPALDLQGDEWVLDACAA 256
Query: 346 PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETA-KLHQVNSVIRTIHADLRTFADNST 404
PGGKT ++AS L+ G V A+D+ +L+++ E A +LH + ++ + F
Sbjct: 257 PGGKTTHLASYLT-TGKVTALDLYDHKLKLIQENANRLHVADKILTKKLDATKVFETFGP 315
Query: 405 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464
DK+L+DAPCSG+G++ ++ D+++N+ D L+ +Q +LD+ V+ GG++VYS
Sbjct: 316 DAFDKILVDAPCSGIGLIRRKPDIKYNKESADFVSLQAIQLAILDSVCQSVRKGGIIVYS 375
Query: 465 TCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARL 524
TC+I +EN E V+ FL +HP F P D + K+ P + DG F +R
Sbjct: 376 TCTIMGKENFEVVDQFLKKHPNFEQVPLDH--ERKDILKNDCILITPELYGSDGFFISRF 433
Query: 525 VR 526
R
Sbjct: 434 KR 435
>gi|322391001|ref|ZP_08064506.1| RNA methyltransferase Sun [Streptococcus parasanguinis ATCC 903]
gi|321142305|gb|EFX37778.1| RNA methyltransferase Sun [Streptococcus parasanguinis ATCC 903]
Length = 437
Score = 186 bits (472), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 132/422 (31%), Positives = 218/422 (51%), Gaps = 27/422 (6%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L D+D VT++V GT+ + L+ + + D + ++P L +L + Y++V LD
Sbjct: 39 LSDKDRSFVTEVVYGTVARKITLEWYLAHVIEDR---TKLDPWLYYLLMMSLYQLVYLDR 95
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P +A+V+E VR+AK + G+ VN ILRKL L++ LP ++ R R +
Sbjct: 96 IPDHAIVNEAVRIAK-RRKEGSEKFVNAILRKL--LREG----LPAIDTIKRKNKR-YSV 147
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
YS PVW+V+ + G+E A + SL ++ + DL + L +L
Sbjct: 148 EYSLPVWLVKALIEEYGEERACAIFK--------SLYQRNKSSIRVIDLDEKEELAQLFE 199
Query: 286 PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAA 345
L ++ + + L KEG +QDES+ LV +D Q + ++D CAA
Sbjct: 200 ATSSLLAPSALVKEQG---HFAAHSLFKEGRITIQDESSQLVAPALDLQGDEWVLDACAA 256
Query: 346 PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETA-KLHQVNSVIRTIHADLRTFADNST 404
PGGKT ++AS L+ G V A+D+ +L+++ E A +LH + ++ + F
Sbjct: 257 PGGKTTHLASYLTT-GKVTALDLYDHKLKLIQENANRLHVADKILTKKLDATKVFETFGP 315
Query: 405 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464
DK+L+DAPCSG+G++ ++ D+++N+ D L+ +Q +LD+ V+ GG++VYS
Sbjct: 316 DAFDKILVDAPCSGIGLIRRKPDIKYNKESADFVSLQAIQLAILDSVCQSVRKGGIIVYS 375
Query: 465 TCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARL 524
TC+I +EN E V+ FL HP F P D + K+ P + DG F +R
Sbjct: 376 TCTIMGKENFEVVDQFLKNHPNFEQVPLDH--ERKDILKNDCILITPELYGSDGFFISRF 433
Query: 525 VR 526
R
Sbjct: 434 KR 435
>gi|312871906|ref|ZP_07731988.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
iners LEAF 2062A-h1]
gi|312873262|ref|ZP_07733318.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
iners LEAF 2052A-d]
gi|311091273|gb|EFQ49661.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
iners LEAF 2052A-d]
gi|311092483|gb|EFQ50845.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
iners LEAF 2062A-h1]
Length = 437
Score = 186 bits (472), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 127/417 (30%), Positives = 222/417 (53%), Gaps = 35/417 (8%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPY 169
D L T IV GT++++ YL++ + L + + PLLL + Y+ LD +P
Sbjct: 40 DKALTTQIVYGTVQYKLYLEYQLKSLVKTKLKEDYLWPLLL----MSAYQYFFLDKIPTA 95
Query: 170 AVVDENVRLAKVALRPGAGN--LVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIY 227
++VDE +LAK G+ + LVNGILR LV + LP ++ + ++ Y
Sbjct: 96 SIVDEANKLAKSYSPKGSQSYRLVNGILRSLV--RRGEILP------EEKDAVKYMSIKY 147
Query: 228 SHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPH 287
S+P W+V+ + G+ + I ++ N S+R +++ D ++ KL +
Sbjct: 148 SYPQWLVKYCLDHFGKAKTISILQAGNMPSVNSIRI---ADMSKKDEILH----KLATEY 200
Query: 288 ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPG 347
++S+ V ++ + L K+GL +QD +A LVV + + + ++D C+APG
Sbjct: 201 KISISNLTNHNVNLDHGSITNSQLFKDGLITIQDSAASLVVDAFNFKGDEKVLDACSAPG 260
Query: 348 GKTLYMASCLSGQGLVYAIDINKGRLRILNET-AKLHQVNSVIRTIHADLRTFADNSTVK 406
GKT +A L+ G V+A+DI++ +L ++ +T +LHQ +I + +
Sbjct: 261 GKTAQIAEYLT-TGKVFALDIHQKKLNLVKQTLTRLHQDQKLIMKALDARKVNEYFFGQQ 319
Query: 407 CDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTC 466
DK+L+DAPCSGLG++ ++ ++R+ +++ED++ L +Q +LD + L+ G LVYSTC
Sbjct: 320 FDKILVDAPCSGLGLIRRKPEVRYEKQMEDLKHLSEIQYNILDHVAGLLAENGELVYSTC 379
Query: 467 SIDPEENEERVEAFLLRHPEFSIDPAD----------GLVPSDFVTKHGFFFSDPIK 513
+I EENE+ V+ FL HP+FS+ P + + P D+ GFF + +K
Sbjct: 380 TISIEENEDVVKRFLTNHPDFSLAPFEVGNLSKCKMIKIFPDDY-NSDGFFIAKFVK 435
>gi|256849782|ref|ZP_05555213.1| rRNA methylase [Lactobacillus crispatus MV-1A-US]
gi|262046519|ref|ZP_06019480.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
crispatus MV-3A-US]
gi|312984157|ref|ZP_07791503.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
crispatus CTV-05]
gi|423318407|ref|ZP_17296284.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
crispatus FB049-03]
gi|423322018|ref|ZP_17299889.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
crispatus FB077-07]
gi|256713271|gb|EEU28261.1| rRNA methylase [Lactobacillus crispatus MV-1A-US]
gi|260572968|gb|EEX29527.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
crispatus MV-3A-US]
gi|310894376|gb|EFQ43452.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
crispatus CTV-05]
gi|405591472|gb|EKB64974.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
crispatus FB077-07]
gi|405596131|gb|EKB69488.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
crispatus FB049-03]
Length = 453
Score = 186 bits (472), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 155/492 (31%), Positives = 251/492 (51%), Gaps = 55/492 (11%)
Query: 43 KVSPSRRTQNLNLEVSPHRAVSAVRLMRIQFGGAFADL-LNKKGKGSGDNEMGYVERTLG 101
KV + + L+++ S RAVS L+++ G+++++ LN K S
Sbjct: 3 KVVSLSQVKKLSIDKSA-RAVSLETLIKVLDQGSYSNISLNNSLKHS------------- 48
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
+L D L T+IV GTI++R +L++ + L + T ++PLLL + Y++
Sbjct: 49 ----NLSIADQNLATNIVYGTIQYRLFLEYQLKGLVRTKLTEKYIKPLLL----MSLYQL 100
Query: 162 VKLD-MPPYAVVDENVRLAK-VALRPGAG-NLVNGILRKL-----VLLKDNNSLPLPKLE 213
+ LD +P AV+DE +LAK R AG LVNGILR +L +NN +
Sbjct: 101 IFLDKVPDRAVLDEANKLAKQYGKRHSAGFRLVNGILRSFTRRGVILPAENNPV------ 154
Query: 214 GNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRAD 273
+ L+ S P W+V+ G ++A ++ N S+R + K +
Sbjct: 155 -------KYLSVKESVPEWLVQYLIDNWGLDKAKSVLNSINEPAKNSVRIS--KLADKEQ 205
Query: 274 LVMQLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDP 333
+ QL Q P L D+ I G+ ++ L +EG +QDE+A LVV D
Sbjct: 206 VFAQLERDNYQ-PQWSKLSSDDVILSHGGIS---ESDLFEEGKLTIQDEAASLVVEAFDF 261
Query: 334 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIH 393
+ + ++D C+APGGKT+ +A + G V A+DI+ +LR++ + A+ V + ++T
Sbjct: 262 EQDEHVLDACSAPGGKTVQIAESIVN-GDVTALDIHDKKLRLVRDNAQRMHVANKVKTKA 320
Query: 394 ADLRTFAD-NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAAS 452
D R + + + K+L+DAPCSGLG+L ++ ++R+ +R +D++ L+ +Q +L A S
Sbjct: 321 CDARKATEIFAAGEFTKILVDAPCSGLGLLRRKPEIRYTKRQQDLQNLQKIQLAILTAVS 380
Query: 453 LLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPI 512
L+K G LVYSTCSI EENEE V+ FL HP+F + P + +K G P
Sbjct: 381 SLLKKNGELVYSTCSISMEENEEVVKKFLQAHPDFELVP---FKLTKLESKTGMLKIMPD 437
Query: 513 KHSLDGAFAARL 524
DG F A+
Sbjct: 438 LDGNDGFFIAKF 449
>gi|420221991|ref|ZP_14726916.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIH08001]
gi|420224854|ref|ZP_14729692.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIH06004]
gi|394290022|gb|EJE33892.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIH08001]
gi|394294257|gb|EJE37943.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIH06004]
Length = 435
Score = 186 bits (471), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 130/422 (30%), Positives = 220/422 (52%), Gaps = 42/422 (9%)
Query: 104 TKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTF--SSMEPLLLQILRIGFYEI 161
T +++ D L T++V GTI+ + LD+L+ K F + ++ + Q+L + Y+
Sbjct: 33 TNNINTVDKNLFTELVYGTIKRKYTLDYLL-------KPFIKTKIKSWVRQLLWMSLYQY 85
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
+ LD +P +A++ E V +AK GN+VNGILR ++ LP E D +
Sbjct: 86 LYLDKIPNHAIIHEAVDIAKKRGGFHTGNIVNGILRTVM------RTELPSFEDIDDTKK 139
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSF--SLRANSRKGVTRADLVMQL 278
R +A YS P W+V W + G E+ N SF ++ R ++R + +
Sbjct: 140 R-IAIQYSLPKWIVDHWVTHFGVEKT------ENIARSFLETVTTTVRANISRDSIDSII 192
Query: 279 NLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQS 338
+ L+ + H + F +G+ V+ + KEG ++QD+S+ +V V++
Sbjct: 193 SKLEQEGYHVKKDDMLPFCLHISGMP-VVNSNAFKEGYISIQDKSSMMVAYVMNLGRDDK 251
Query: 339 IVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT 398
++D C+APGGK +MA LS +G V A DI++ ++ ++ + K ++N+ I+ D
Sbjct: 252 VLDACSAPGGKACHMAEILSPEGHVDATDIHEHKINLIKQNIKKLKLNN-IKAFQHDATE 310
Query: 399 FADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPG 458
D DK+L+DAPCSGLGVL + ++++++ ++ L LQ ++L+ +KPG
Sbjct: 311 VYDKM---YDKILVDAPCSGLGVLRHKPEIKYSQSQNSIKSLVELQLQILENVKDNIKPG 367
Query: 459 GVLVYSTCSIDPEENEERVEAFLLRHPEFSID----PADG-------LVPSDFVTKHGFF 507
G +VYSTC+I+ ENE + FL RH +F + PA G ++P DF GFF
Sbjct: 368 GTIVYSTCTIEQMENENVIYTFLKRHKDFEFEPFQNPATGEQVKTLQILPQDF-NSDGFF 426
Query: 508 FS 509
S
Sbjct: 427 IS 428
>gi|229552470|ref|ZP_04441195.1| RNA methyltransferase [Lactobacillus rhamnosus LMS2-1]
gi|258539841|ref|YP_003174340.1| tRNA and rRNA cytosine-C5-methytransferase (sun protein)
[Lactobacillus rhamnosus Lc 705]
gi|385835493|ref|YP_005873267.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
rhamnosus ATCC 8530]
gi|229314207|gb|EEN80180.1| RNA methyltransferase [Lactobacillus rhamnosus LMS2-1]
gi|257151517|emb|CAR90489.1| tRNA and rRNA cytosine-C5-methytransferase (sun protein)
[Lactobacillus rhamnosus Lc 705]
gi|355394984|gb|AER64414.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
rhamnosus ATCC 8530]
Length = 446
Score = 186 bits (471), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 147/458 (32%), Positives = 226/458 (49%), Gaps = 48/458 (10%)
Query: 85 GKGSGDNEMGYVERTLG--FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKT 142
GKG GY TL LD RD L+T+IV G I+ + LD+L+ +
Sbjct: 19 GKG------GYSNLTLDHVITKYQLDSRDAGLLTNIVYGVIQHQLTLDYLLAPFVKTRQ- 71
Query: 143 FSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLL 201
++ + +L+ Y++ LD +P AV ++ +AK G V G+LR+
Sbjct: 72 ---LDTWVRCLLQTSVYQLQYLDKVPARAVFFDSTEIAKKLGHQGVAKFVTGVLRQ---- 124
Query: 202 KDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSL 261
+ P P + + LA S PVW+V++ LG+ + K++ N S+
Sbjct: 125 AQRSGYPDPMTIADP---IQRLAITSSTPVWLVKKLQAQLGETKTAKILAAINQPAHASI 181
Query: 262 RANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLK------EG 315
R N+ K T A L L L+ Q P L E GL V G L +G
Sbjct: 182 RVNTTK-TTAAAL---LKALQPQFPA-----LKESPLTPVGL--VAPGGHLAGTREFADG 230
Query: 316 LCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQ--GLVYAIDINKGRL 373
L +QDES+ LV +D QPG ++D CAAPGGKT ++A L G V A+D++ ++
Sbjct: 231 LYTMQDESSMLVAPSLDVQPGDQVLDACAAPGGKTTHIAQYLDPDQGGRVTALDLHANKV 290
Query: 374 RILNETAKLHQVNSVIRTIHADLRTFADNSTVKC-DKVLLDAPCSGLGVLSKRADLRWNR 432
R++ + AK ++ + D R A N + DK+L+DAPCSGLG++ ++ ++++ +
Sbjct: 291 RLIQQNAKRLDLDDRVAAQVMDARQVAANFAAESFDKILVDAPCSGLGLIRRKPEIKYTK 350
Query: 433 RLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPA 492
+ ED++ L+ +Q +LD+ + +K GG L YSTC++ EEN++ V FL HPEF P
Sbjct: 351 QPEDLQHLQKIQLAILDSVAPTLKIGGRLTYSTCTMVKEENQDVVAHFLATHPEFEQVPV 410
Query: 493 DGLVPSDFVTKHGF----FFSDPIKHSLDGAFAARLVR 526
L P HG F D + DG F A L+R
Sbjct: 411 LTLKP--LAKTHGAPALQLFPD--DYDTDGFFIASLIR 444
>gi|330832248|ref|YP_004401073.1| tRNA and rRNA cytosine-C5-methylase [Streptococcus suis ST3]
gi|329306471|gb|AEB80887.1| tRNA and rRNA cytosine-C5-methylase [Streptococcus suis ST3]
Length = 436
Score = 186 bits (471), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 136/424 (32%), Positives = 213/424 (50%), Gaps = 32/424 (7%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L +D L T++V GT+ + L+ + D + ++ + +L + Y++V LD
Sbjct: 39 LSAQDKGLATELVYGTVSRKITLEWYLAHFIEDRE---KLDTWVYYLLMLSLYQLVYLDK 95
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P +AVV+E V +AK +PG VN ILRKL +SLP P + + + + L+
Sbjct: 96 LPTHAVVNEAVNIAK--RKPGTDKFVNAILRKL----SQDSLPKP---ADIKRKNKRLSV 146
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
YS PVW+V+ G E A K+ S R + VT V QL
Sbjct: 147 QYSVPVWLVQTLIAEYGDERAEKIF------QSLHDRNKASVRVTDGQQVEQL------- 193
Query: 286 PHELSLHLDEFIRVKTGLQNVIQAG--LLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCC 343
EL + V + AG K+GL +QDE++ LV + Q + I+D C
Sbjct: 194 AEELGAQHSQLSPVGLVKSHGHFAGTDYFKKGLITIQDETSQLVAPTLGIQGDEIILDAC 253
Query: 344 AAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADL-RTFADN 402
AAPGGKT +MAS L+ G VYA+D+ +L ++ E A+ + I T D R +
Sbjct: 254 AAPGGKTCHMASYLT-DGKVYALDLYDHKLNLIEENARRLGLEDKIETKGLDASRVHEEF 312
Query: 403 STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLV 462
DK+L+DAPCSG+G++ ++ D+R+N+ D + LK +Q ++LD+ +K GG++
Sbjct: 313 GPDTFDKILVDAPCSGIGLIRRKPDIRYNKASMDFDSLKTIQLQILDSVCQSLKIGGIIT 372
Query: 463 YSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAA 522
YSTC+I +EN+E ++ FL HP F + P + G P ++ DG F
Sbjct: 373 YSTCTIIAKENQEVIQEFLQNHPNFEQVTLEH--PQTDIMVDGCLLITPEQYKTDGFFIG 430
Query: 523 RLVR 526
+L R
Sbjct: 431 QLRR 434
>gi|377556855|ref|ZP_09786534.1| Ribosomal RNA small subunit methyltransferase B [Lactobacillus
gastricus PS3]
gi|376167285|gb|EHS86138.1| Ribosomal RNA small subunit methyltransferase B [Lactobacillus
gastricus PS3]
Length = 443
Score = 186 bits (471), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 133/426 (31%), Positives = 221/426 (51%), Gaps = 44/426 (10%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD 165
DL+D D RLVT++V G ++ + L++ + +K + + LLL L Y+ LD
Sbjct: 36 DLNDADQRLVTNLVYGVLQHQITLEYWLAPFIKGKKVAAWVRTLLLMTL----YQYHYLD 91
Query: 166 -MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVL--LKDNNSLPLPKLEGNDRAQARA 222
+P +A +E + +AK PG V G+ ++ + D N++ P +
Sbjct: 92 RIPDWAATNEAIEIAKRHGNPGIRKFVTGVCHAILRQGVADLNTIKDP---------IQR 142
Query: 223 LATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLK 282
L+ + S P W++ + + G + + V N + SLR N+ T A +Q L
Sbjct: 143 LSVVASLPQWLIEKLSDQYGMQVTKAISVAVNQPANQSLRVNTNLTNTEA---VQAELET 199
Query: 283 LQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 342
+LS D +K+G +V + KEG +QDESA L V + +P ++D
Sbjct: 200 AGFEVKLSPLADNAFIIKSG--SVTETTAFKEGRITIQDESAMLAVESMHLKPDDLVLDA 257
Query: 343 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT---- 398
CAAPGGKT+ +A L+ G V A+DI+ +++++ + A+ QV I+ + D R
Sbjct: 258 CAAPGGKTVQIAENLTT-GKVVALDIHAHKVKLIEQNAQRMQVADRIQALQLDARKVDER 316
Query: 399 FADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPG 458
FAD + DK+L+DAPCSG G+L ++ ++R+++ +D + L +Q +LD+ + VK G
Sbjct: 317 FADET---FDKILVDAPCSGFGLLRRKPEIRYDKTWQDSQNLHRIQGVILDSVAPKVKKG 373
Query: 459 GVLVYSTCSIDPEENEERVEAFLLRHPEFSIDP--------AD------GLVPSDFVTKH 504
G++ YSTC+I EN+ V+AFL RHPEF + AD ++P++F
Sbjct: 374 GIITYSTCTILATENDGTVQAFLARHPEFELMTTKTARAIKADRHAKTLTILPNEF-NSD 432
Query: 505 GFFFSD 510
GFF S+
Sbjct: 433 GFFISN 438
>gi|326790876|ref|YP_004308697.1| sun protein [Clostridium lentocellum DSM 5427]
gi|326541640|gb|ADZ83499.1| sun protein [Clostridium lentocellum DSM 5427]
Length = 445
Score = 186 bits (471), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 120/387 (31%), Positives = 204/387 (52%), Gaps = 15/387 (3%)
Query: 90 DNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPL 149
+ E Y + L +D+D +D VT++V GT++++ LD+++ + M+PL
Sbjct: 17 EKEASYAQLVLKRALQDIDAKDKGFVTEVVYGTLKYQIKLDYILNQF--SKTPVHRMKPL 74
Query: 150 LLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLP 208
+ ++R+ Y+++ LD +P A+++E V++ K VNG+LR + ++ P
Sbjct: 75 IRNVMRMSLYQMLYLDKVPTSAIINEAVKIVKKRKFQNLSGFVNGLLRNIDRQREQIIYP 134
Query: 209 LPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKG 268
+ A++ Y+ P WM+ W K +EE + N R N+ K
Sbjct: 135 -----DETKNLVLAMSIHYAIPEWMIEEWLKVYKEEEVKSICEALNERAEVCARYNTLK- 188
Query: 269 VTRADLVMQLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVV 328
+ + L + +Q+ L+E +K G+ N+ + K+G VQDESA LV
Sbjct: 189 TNKLEFEETLKVEGIQLKE--GAFLEEAFYLK-GVDNLQNSPSFKKGEWTVQDESAMLVA 245
Query: 329 AVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSV 388
V+ PQ G I+D C+APGGK+++MA + G + + DI+ +L ++ + A+ + +
Sbjct: 246 HVMAPQKGDCILDMCSAPGGKSIHMAELMENAGRIVSCDIHPHKLELIKKNAERMGITII 305
Query: 389 IRTIHADLRTFADNSTVKC-DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDEL 447
T+ T + V+ DKVLLDAPCSGLG++ ++ D+R ++ E + E+ LQ +L
Sbjct: 306 EPTLQDG--TLKNECYVEAFDKVLLDAPCSGLGIMKRKPDIRTHKSKEGLLEIVALQKKL 363
Query: 448 LDAASLLVKPGGVLVYSTCSIDPEENE 474
AA +KPGG LVYSTC+I EENE
Sbjct: 364 ALAAISYLKPGGRLVYSTCTISHEENE 390
>gi|188588047|ref|YP_001920563.1| ribosomal RNA small subunit methyltransferase B [Clostridium
botulinum E3 str. Alaska E43]
gi|251779411|ref|ZP_04822331.1| ribosomal RNA small subunit methyltransferase B [Clostridium
botulinum E1 str. 'BoNT E Beluga']
gi|188498328|gb|ACD51464.1| ribosomal RNA small subunit methyltransferase B [Clostridium
botulinum E3 str. Alaska E43]
gi|243083726|gb|EES49616.1| ribosomal RNA small subunit methyltransferase B [Clostridium
botulinum E1 str. 'BoNT E Beluga']
Length = 438
Score = 186 bits (471), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 145/431 (33%), Positives = 232/431 (53%), Gaps = 40/431 (9%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD 165
+L++RD L+T+IV G +R ++ LD +I D K M+ +L ILR+ Y++ LD
Sbjct: 33 NLEERDKALLTEIVYGVLRRKKTLDLIIANFVRDIKL---MDHEVLNILRVAIYQMTFLD 89
Query: 166 -MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P YA +E V AK + P AG LVNGILR KD + + + + N+ A
Sbjct: 90 KVPTYAACNEAVDEAK-KISPEAGKLVNGILRNFS--KDPDDITISGNKINEYAYK---- 142
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQ 284
+S WM+R K G++ A K+MV N P ++R N K D V + L ++
Sbjct: 143 --FSFEPWMIRLLIKQYGEDLAKKIMVGLNQIPQTTVRVNDTK--CEYDEVFE-KLEEIG 197
Query: 285 VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 344
E E I +K G ++ + L K+G VQDESA LV +++ + ++D C+
Sbjct: 198 YCVEEGFMCPEAILIKGG-SSIQENPLFKDGEITVQDESAMLVAPLLELENDMKVLDLCS 256
Query: 345 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSV------IRTIHADLRT 398
APGGKT ++A L G V A D+++ +L ++ E + +N+V ++ADL +
Sbjct: 257 APGGKTTHIAELLQNTGEVRAFDLHESKLGLIKENCERLGLNNVKIEVGDATKLNADLVS 316
Query: 399 FADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPG 458
+AD +VL+D PCSGLG++ K+ +++WN+ E++ E+ +Q E+++ A +K G
Sbjct: 317 YAD-------RVLIDVPCSGLGIIRKKPEIKWNKTRENLREIIPVQREIMNNAWEYLKNG 369
Query: 459 GVLVYSTCSIDPEENEERVEAFLLRHPE-----FSIDPADGLVPSDFVTKHGFFFSDPIK 513
GV++YSTC+++ EENEE +E FL H + I D L+ K+G P
Sbjct: 370 GVMIYSTCTLNKEENEENIEWFLNTHKDCKLKTIFIGKEDNLI----YNKNGTLTILP-N 424
Query: 514 HSLDGAFAARL 524
+DG F A+L
Sbjct: 425 AKMDGFFVAKL 435
>gi|223932608|ref|ZP_03624608.1| sun protein [Streptococcus suis 89/1591]
gi|386583538|ref|YP_006079941.1| sun protein [Streptococcus suis D9]
gi|223898718|gb|EEF65079.1| sun protein [Streptococcus suis 89/1591]
gi|353735684|gb|AER16693.1| sun protein [Streptococcus suis D9]
Length = 436
Score = 186 bits (471), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 133/427 (31%), Positives = 214/427 (50%), Gaps = 38/427 (8%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L +D L T++V GT+ + L+ + D + ++ + +L + Y++V LD
Sbjct: 39 LSAQDKGLATELVYGTVSRKITLEWYLAHFIEDRE---KLDTWIYYLLMLSLYQLVYLDK 95
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P +AVV+E V +AK +PG VN ILRK+ ++LP P + + + + L+
Sbjct: 96 LPTHAVVNEAVNIAK--RKPGTDKFVNAILRKI----SQSTLPNP---ADIKRKNKRLSV 146
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVM-----QLNL 280
YS PVW+V+ G E A K+ + S+R + V R + QL+
Sbjct: 147 QYSVPVWLVQTLIAEYGDERAEKIFQSLHDRNKASVRVTDGQQVERLAEELGAQHSQLSP 206
Query: 281 LKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIV 340
+ L H D F K+GL +QDE++ LV +D Q + I+
Sbjct: 207 VGLVKSHGHFAGTDHF----------------KKGLITIQDETSQLVAPTLDIQGDEIIL 250
Query: 341 DCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADL-RTF 399
D CAAPGGKT +MAS L+ G VYA+D+ +L ++ E A + I T D R
Sbjct: 251 DACAAPGGKTCHMASYLT-DGKVYALDLYDHKLNLIEENAHRLGLEDKIETKGLDASRVH 309
Query: 400 ADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGG 459
+ DK+L+DAPCSG+G++ ++ D+R+N+ D + LK +Q ++LD+ +K GG
Sbjct: 310 EEFGPDTFDKILVDAPCSGIGLIRRKPDIRYNKASMDFDSLKTIQLQILDSVCQSLKIGG 369
Query: 460 VLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGA 519
++ YSTC+I +EN+E ++ FL HP F + P + G P ++ DG
Sbjct: 370 IITYSTCTIIAKENQEVIQEFLQNHPNFEQVTLEH--PQTDIMVDGCLLITPEQYKTDGF 427
Query: 520 FAARLVR 526
F +L R
Sbjct: 428 FIGQLRR 434
>gi|293380312|ref|ZP_06626386.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
crispatus 214-1]
gi|295693192|ref|YP_003601802.1| sun protein [Lactobacillus crispatus ST1]
gi|290923127|gb|EFE00056.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
crispatus 214-1]
gi|295031298|emb|CBL50777.1| SUN protein [Lactobacillus crispatus ST1]
Length = 441
Score = 186 bits (471), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 151/474 (31%), Positives = 242/474 (51%), Gaps = 54/474 (11%)
Query: 61 RAVSAVRLMRIQFGGAFADL-LNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIV 119
RAVS L+++ G+++++ LN K S +L D L T+IV
Sbjct: 8 RAVSLETLIKVLDQGSYSNISLNNSLKHS-----------------NLSIADQNLATNIV 50
Query: 120 GGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRL 178
GTI++R +L++ + L + T ++PLLL + Y+++ LD +P AV+DE +L
Sbjct: 51 YGTIQYRLFLEYQLKGLVRTKLTEKYIKPLLL----MSLYQLIFLDKVPDRAVLDEANKL 106
Query: 179 AK-VALRPGAG-NLVNGILRKL-----VLLKDNNSLPLPKLEGNDRAQARALATIYSHPV 231
AK R AG LVNGILR +L +NN + + L+ S P
Sbjct: 107 AKQYGKRHSAGFRLVNGILRSFTRRGVILPAENNPV-------------KYLSVKESVPE 153
Query: 232 WMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSL 291
W+V+ G ++A ++ N S+R + K + + QL Q P L
Sbjct: 154 WLVQYLIDNWGLDKAKSVLNSINEPAKNSVRIS--KLADKEQVFAQLERDNYQ-PQWSKL 210
Query: 292 HLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTL 351
D+ I G+ ++ L +EG +QDE+A LVV D + + ++D C+APGGKT+
Sbjct: 211 SSDDVILSHGGIS---ESDLFEEGKLTIQDEAASLVVEAFDFEQDEHVLDACSAPGGKTV 267
Query: 352 YMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-NSTVKCDKV 410
+A + G V A+DI+ +LR++ + A+ V + ++T D R + + + K+
Sbjct: 268 QIAESIVN-GDVTALDIHDKKLRLVRDNAQRMHVANKVKTKACDARKATEIFAAGEFTKI 326
Query: 411 LLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDP 470
L+DAPCSGLG+L ++ ++R+ +R +D++ L+ +Q +L A S L+K G LVYSTCSI
Sbjct: 327 LVDAPCSGLGLLRRKPEIRYTKRQQDLQNLQKIQLAILTAVSSLLKKNGELVYSTCSISM 386
Query: 471 EENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARL 524
EENEE V+ FL HP+F + P + +K G P DG F A+
Sbjct: 387 EENEEVVKKFLQAHPDFELVP---FKLTKLESKTGMLKIMPDLDGNDGFFIAKF 437
>gi|259047043|ref|ZP_05737444.1| RNA methyltransferase Sun [Granulicatella adiacens ATCC 49175]
gi|259036093|gb|EEW37348.1| RNA methyltransferase Sun [Granulicatella adiacens ATCC 49175]
Length = 440
Score = 186 bits (471), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 139/430 (32%), Positives = 222/430 (51%), Gaps = 35/430 (8%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
LD RD L+T++ GTI+ + LD + +K ME +L +LR+ Y++ LD
Sbjct: 35 LDVRDRGLLTELFYGTIQRKLTLDFYLKPFIEKQK---KMELWVLSLLRMTVYQMAYLDR 91
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGND-----RAQA 220
+P +A + E V++AK G VNG+LR + + G D + +
Sbjct: 92 VPDHAAIFEAVQIAKKRGHQGIAKFVNGVLRNV------------QRSGFDGVSSIKDER 139
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLR-ANSRKGVTRADLVMQLN 279
L+ +S P W+V + G E A ++ N P S R N V +++
Sbjct: 140 ERLSVEFSMPRWIVELLFEQYG-EVAREIFPSLNIAPHLSARIQNPEMSVEEVQTLLREE 198
Query: 280 LLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSI 339
+ +Q E L I VK G +++ + K+G+ VQDES+ LV V Q G +
Sbjct: 199 GVMVQ---ESKLSPRAVI-VKEG--DLLGSKAFKDGIVTVQDESSSLVAQVGKLQHGDKV 252
Query: 340 VDCCAAPGGKTLYMASCLSGQ--GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR 397
+D CAAPGGKT + AS L + GLV A+D+++ +LR +++ AK V I T D R
Sbjct: 253 LDTCAAPGGKTTHFASYLVAEEGGLVEALDLHENKLRKIHQNAKRLGVEDRIHTHALDAR 312
Query: 398 TFAD-NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVK 456
+ D V +DAPCSGLG++ ++ D+++ + ED+ +L+I+Q E+L + + +VK
Sbjct: 313 KVGELFEKESFDAVFVDAPCSGLGLMRRKPDIKYTKNSEDLTKLQIIQLEILASVATMVK 372
Query: 457 PGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSL 516
G L+YSTC+I+ ENEE V FL HP+F + P + ++ ++ P ++
Sbjct: 373 NSGKLIYSTCTINKSENEEVVLKFLANHPDFELQPIEEFGCTN---ENPMLTILPHEYHT 429
Query: 517 DGAFAARLVR 526
DG F AR+VR
Sbjct: 430 DGFFIARMVR 439
>gi|331082369|ref|ZP_08331495.1| ribosomal RNA small subunit methyltransferase B [Lachnospiraceae
bacterium 6_1_63FAA]
gi|330400855|gb|EGG80456.1| ribosomal RNA small subunit methyltransferase B [Lachnospiraceae
bacterium 6_1_63FAA]
Length = 454
Score = 186 bits (471), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 143/453 (31%), Positives = 236/453 (52%), Gaps = 29/453 (6%)
Query: 81 LNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDE 140
+NK+G+ S V R+ + + L+ ++ +T + GT+ ++ LD++ L +
Sbjct: 18 INKEGQHSH-----LVIRSTLEKYQYLEKQERAFLTRVCEGTLEYKLRLDYI--LDQYSS 70
Query: 141 KTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNL---VNGILR 196
M+P++ +ILR Y+++ +D +P AV DE V+LA+ + G NL VNG+LR
Sbjct: 71 VPVEKMKPVIREILRSSVYQLLYMDNVPDSAVCDEAVKLAR---KKGFYNLTGFVNGVLR 127
Query: 197 KLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSD 256
K+ +D +S+ P E N + L+ +YS P W+V ++ G E+ K++ +
Sbjct: 128 KVA--RDYSSIHFP--EKNQPIEY--LSVLYSMPKWLVEKFLAEYGFEKTEKMLEAFLKE 181
Query: 257 PSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGL 316
++R R+ + D V+ +L + V E + + + +K + + G
Sbjct: 182 KPTTIRI--RQHLVDKDAVLD-SLKRQNVTVEPAPYAENAYYIK-NYDYLPALEAFRMGN 237
Query: 317 CAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRIL 376
VQD S+ LV V DP+ G ++D CAAPGGKTL +A L G G + A DI++ + ++
Sbjct: 238 IQVQDVSSMLVGEVADPKEGDYVIDLCAAPGGKTLCIADKLKGTGRIDARDISRTKTDLI 297
Query: 377 NETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLED 436
E A +V+ + D S K D ++ D PCSGLGV+ K+ D+++N
Sbjct: 298 RENAIRQNFLNVVVS-EKDATQLDSESFEKADILIADVPCSGLGVIGKKTDIKYNITQTG 356
Query: 437 MEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLV 496
+ EL LQ ++L+ AS VKPGG L+YSTC+I+ EEN E V F+ +P + ++ D +
Sbjct: 357 IAELVNLQRKILEQASTYVKPGGTLIYSTCTINREENIENVRWFVENYP-YELESIDDYL 415
Query: 497 PSDF---VTKHGFFFSDPIKHSLDGAFAARLVR 526
+ TK G+ P H DG F ARL R
Sbjct: 416 CEELRSDTTKEGYLQLLPGVHDCDGFFIARLKR 448
>gi|386585580|ref|YP_006081982.1| sun protein [Streptococcus suis D12]
gi|353737726|gb|AER18734.1| sun protein [Streptococcus suis D12]
Length = 436
Score = 185 bits (470), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 132/424 (31%), Positives = 213/424 (50%), Gaps = 32/424 (7%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L +D L T++V GT+ + L+ + D + ++ + +L + Y++V LD
Sbjct: 39 LSAQDKGLATELVYGTVSRKITLEWYLAHFIEDRE---KLDTWVYYLLMLSLYQLVDLDK 95
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P +AVV+E V +AK +PG VN ILRK+ ++LP P + + + + L+
Sbjct: 96 LPTHAVVNEAVNIAK--RKPGTDKFVNAILRKI----SQSTLPNP---ADIKRKNKRLSV 146
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
YS PVW+V+ G E A K+ + S+R + V R +
Sbjct: 147 QYSVPVWLVQTLIAEYGDERAEKIFQSLHDRNKASVRVTDGQQVER-------------L 193
Query: 286 PHELSLHLDEFIRVKTGLQNVIQAG--LLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCC 343
EL + V + AG KEGL +QDE++ LV +D Q + I+D C
Sbjct: 194 AEELGAQHSQLSPVGLVKSHGHFAGTDYFKEGLITIQDETSQLVAPTLDIQGDEIILDAC 253
Query: 344 AAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADL-RTFADN 402
AAPGGKT +MAS L+ G VYA+D+ +L ++ E A+ + I T D R +
Sbjct: 254 AAPGGKTCHMASYLT-DGKVYALDLYDHKLNLIEENARRLGLEDKIETKGLDASRVHEEF 312
Query: 403 STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLV 462
DK+L+DAPCSG+G++ ++ D+R+N+ D + LK +Q ++LD+ +K GG++
Sbjct: 313 GPDTFDKILVDAPCSGIGLIRRKPDIRYNKASMDFDSLKTIQLQILDSVCQSLKIGGIIT 372
Query: 463 YSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAA 522
YSTC+I +EN+E ++ FL HP F + P + P ++ DG F
Sbjct: 373 YSTCTIIAKENQEVIQEFLQNHPNFEQVTLEH--PQTDIMVDSCLLITPEQYKTDGFFIG 430
Query: 523 RLVR 526
+L R
Sbjct: 431 QLRR 434
>gi|418070840|ref|ZP_12708115.1| 16S rRNA methyltransferase B [Lactobacillus rhamnosus R0011]
gi|423078824|ref|ZP_17067501.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
rhamnosus ATCC 21052]
gi|357540260|gb|EHJ24277.1| 16S rRNA methyltransferase B [Lactobacillus rhamnosus R0011]
gi|357549112|gb|EHJ30960.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
rhamnosus ATCC 21052]
Length = 446
Score = 185 bits (470), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 147/458 (32%), Positives = 226/458 (49%), Gaps = 48/458 (10%)
Query: 85 GKGSGDNEMGYVERTLG--FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKT 142
GKG GY TL LD RD L+T+IV G I+ + LD+L+ +
Sbjct: 19 GKG------GYSNLTLDHVITKYQLDSRDAGLLTNIVYGVIQHQLTLDYLLAPFVKTRQ- 71
Query: 143 FSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLL 201
++ + +L+ Y++ LD +P AV ++ +AK G V G+LR+
Sbjct: 72 ---LDTWVRCLLQTAVYQLQYLDKVPARAVFFDSTEIAKKLGHQGVAKFVTGVLRQ---- 124
Query: 202 KDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSL 261
+ P P + + LA S PVW+V++ LG+ + K++ N S+
Sbjct: 125 AQRSGYPDPMTIADP---IQRLAITSSTPVWLVKKLQAQLGETKTAKILAAINQPAHASI 181
Query: 262 RANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLK------EG 315
R N+ K T A L L L+ Q P L E GL V G L +G
Sbjct: 182 RVNTTK-TTAAAL---LKALQPQFPA-----LKESPLTPVGL--VAPGGHLAGTREFADG 230
Query: 316 LCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQ--GLVYAIDINKGRL 373
L +QDES+ LV +D QPG ++D CAAPGGKT ++A L G V A+D++ ++
Sbjct: 231 LYTMQDESSMLVAPSLDVQPGDQVLDACAAPGGKTTHIAQYLDPDQGGRVTALDLHANKV 290
Query: 374 RILNETAKLHQVNSVIRTIHADLRTFADNSTVKC-DKVLLDAPCSGLGVLSKRADLRWNR 432
R++ + AK ++ + D R A N + DK+L+DAPCSGLG++ ++ ++++ +
Sbjct: 291 RLIQQNAKRLDLDDRVAAQVMDARQVAANFAAESFDKILVDAPCSGLGLIRRKPEIKYTK 350
Query: 433 RLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPA 492
+ ED++ L+ +Q +LD+ + +K GG L YSTC++ EEN++ V FL HPEF P
Sbjct: 351 QPEDLQHLQKIQLAILDSVAPTLKIGGRLTYSTCTMVREENQDVVAHFLATHPEFEQVPV 410
Query: 493 DGLVPSDFVTKHGF----FFSDPIKHSLDGAFAARLVR 526
L P HG F D + DG F A L+R
Sbjct: 411 LTLKP--LAKTHGAPALQLFPD--DYDTDGFFIASLIR 444
>gi|420234376|ref|ZP_14738940.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIH051475]
gi|394304338|gb|EJE47744.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIH051475]
Length = 435
Score = 185 bits (470), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 129/420 (30%), Positives = 222/420 (52%), Gaps = 38/420 (9%)
Query: 104 TKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTF--SSMEPLLLQILRIGFYEI 161
T +++ D L T++V GTI+ + LD+L+ K F + ++ + Q+L + Y+
Sbjct: 33 TNNINTVDKNLFTELVYGTIKRKYSLDYLL-------KPFIKTKIKSWVRQLLWMSLYQY 85
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
+ LD +P +A++ E V +AK GN+VNGILR ++ + LP E D +
Sbjct: 86 LYLDKIPNHAIIHEAVDIAKKRGGYHTGNIVNGILRTVMRTE------LPSFEDIDDTKK 139
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
R +A YS P W+V W + G E+ + + ++RAN ++R + ++
Sbjct: 140 R-IAIQYSLPKWIVDHWVTHFGVEKTENIARSFLEPVTTTVRAN----ISRDSIDSIISK 194
Query: 281 LKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIV 340
L+ + H + F +G+ V+ + KEG ++QD+S+ +V V++ ++
Sbjct: 195 LEQEGYHVKKDDMLPFCLHISGMP-VVNSNAFKEGYISIQDKSSMMVAYVMNLGRDDKVL 253
Query: 341 DCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 400
D C+APGGK +MA LS +G V A DI++ ++ ++ + K ++N+ I+ D
Sbjct: 254 DACSAPGGKACHMAEILSPEGHVDATDIHEHKINLIKQNIKKLKLNN-IKAFQHDATEVY 312
Query: 401 DNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGV 460
D DK+L+DAPCSGLGVL + ++++++ ++ L LQ ++L+ +KPGG
Sbjct: 313 DKM---YDKILVDAPCSGLGVLRHKPEIKYSQSQNSIKSLVELQLQILENVKDNIKPGGT 369
Query: 461 LVYSTCSIDPEENEERVEAFLLRHPEFSID----PADG-------LVPSDFVTKHGFFFS 509
+VYSTC+I+ ENE + FL RH +F + PA G ++P DF GFF S
Sbjct: 370 IVYSTCTIEQMENENVIYTFLKRHKDFEFEPFQNPATGEQVKTLQILPQDF-NSDGFFIS 428
>gi|57866755|ref|YP_188366.1| sun protein [Staphylococcus epidermidis RP62A]
gi|242242499|ref|ZP_04796944.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus epidermidis
W23144]
gi|418327694|ref|ZP_12938836.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis 14.1.R1.SE]
gi|418612965|ref|ZP_13175986.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis VCU117]
gi|418626770|ref|ZP_13189366.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis VCU126]
gi|418631938|ref|ZP_13194382.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis VCU128]
gi|420175015|ref|ZP_14681460.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIHLM061]
gi|420192761|ref|ZP_14698618.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIHLM023]
gi|57637413|gb|AAW54201.1| sun protein [Staphylococcus epidermidis RP62A]
gi|242234073|gb|EES36385.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus epidermidis
W23144]
gi|365232724|gb|EHM73710.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis 14.1.R1.SE]
gi|374817275|gb|EHR81460.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis VCU117]
gi|374831314|gb|EHR95056.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis VCU126]
gi|374833607|gb|EHR97282.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis VCU128]
gi|394244301|gb|EJD89646.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIHLM061]
gi|394260577|gb|EJE05386.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIHLM023]
Length = 435
Score = 185 bits (470), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 128/422 (30%), Positives = 218/422 (51%), Gaps = 42/422 (9%)
Query: 104 TKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTF--SSMEPLLLQILRIGFYEI 161
T +++ D L T++V GT++ + LD+L+ K F + ++ + Q+L + Y+
Sbjct: 33 TNNINTVDKNLFTELVYGTLKRKYTLDYLL-------KPFIKTKIKSWVRQLLWMSLYQY 85
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
+ LD +P +A++ E V +AK GN+VNGILR ++ + LP E D +
Sbjct: 86 LYLDKIPNHAIIHEAVDIAKKRGGYHTGNIVNGILRTVMRTE------LPSFEDIDDTKK 139
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSF--SLRANSRKGVTRADLVMQL 278
R +A YS P W+V W + G E+ N SF + R ++R + +
Sbjct: 140 R-IAIQYSLPKWIVDHWVTHFGIEKT------ENIAQSFLEPVATTVRANISRGSIDSII 192
Query: 279 NLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQS 338
+ L+ + H + F +GL V+ + KEG ++QD+S+ +V V++
Sbjct: 193 SKLEQEGYHVKKDDMLPFCLHISGLP-VVNSNAFKEGYISIQDKSSMMVAYVMNLGRDDK 251
Query: 339 IVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT 398
++D C+APGGK +MA LS +G V A DI++ ++ ++ + K ++N+ I+ D
Sbjct: 252 VLDACSAPGGKACHMAEILSPEGHVDATDIHEHKINLIKQNIKKLKLNN-IKAFQHDATE 310
Query: 399 FADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPG 458
D DK+L+DAPCSGLGVL + ++++++ ++ L LQ ++L+ +KPG
Sbjct: 311 VYDKM---YDKILVDAPCSGLGVLRHKPEIKYSQSQNSIKSLVELQLQILENVKDNIKPG 367
Query: 459 GVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADG-----------LVPSDFVTKHGFF 507
G +VYSTC+I+ ENE + FL RH +F +P ++P DF GFF
Sbjct: 368 GTIVYSTCTIEQMENENVIYTFLKRHKDFEFEPIQNPVTGEQVKTLQILPQDF-NSDGFF 426
Query: 508 FS 509
S
Sbjct: 427 IS 428
>gi|153938943|ref|YP_001391803.1| ribosomal RNA small subunit methyltransferase B [Clostridium
botulinum F str. Langeland]
gi|152934839|gb|ABS40337.1| ribosomal RNA small subunit methyltransferase B [Clostridium
botulinum F str. Langeland]
Length = 442
Score = 185 bits (470), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 127/421 (30%), Positives = 222/421 (52%), Gaps = 17/421 (4%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD 165
+L D D L+T+IV GT++++ LD I + + +M+ ++ ILRI Y+I LD
Sbjct: 34 NLKDNDKALITEIVYGTLKYKETLD--IIIQSYLRNPIKTMDKNIVNILRITIYQIRYLD 91
Query: 166 -MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P +A V+E V ++K + LVNG+LR + N + R +
Sbjct: 92 KIPSFAAVNEAVEMSK-KISIKYSKLVNGVLRNYIRTYKNKKFY------DHRNNLEKFS 144
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQ 284
+YS+P W+++ + G E A K++ N P+ ++R N+ K + + +L
Sbjct: 145 FMYSYPKWLIKMFISQYGIEMAEKILKGLNERPNITVRVNNLK-IDYDEAFEKLGEYGYN 203
Query: 285 VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 344
+ E E I++ G +N+ + L EG VQDESA LV ++ ++D C+
Sbjct: 204 I--EEGYICPEAIQIIKG-KNIEKNPLFIEGNITVQDESAMLVAPSMELDEESIVLDLCS 260
Query: 345 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNST 404
APGGKT +++ ++ + VYA D+++ +L ++ AK + + I T D F
Sbjct: 261 APGGKTTHISEIMNNKSKVYAYDVHQNKLSLIESNAKRLGIKN-IETDVGDAAVFNKKLK 319
Query: 405 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464
K +VL+D PCSGLG++ K+ +++W + +++ + +Q ++++ + +K GG+L+YS
Sbjct: 320 EKAHRVLMDVPCSGLGIIRKKPEIKWTKNEREIKNIIAIQRKIMNNGASYLKEGGILLYS 379
Query: 465 TCSIDPEENEERVEAFLLRHPEFSIDP-ADGLVPSDFVTKHGFFFSDPIKHSLDGAFAAR 523
TC+++ EENEE + FL +H F I+P G V + K GF P +DG F A+
Sbjct: 380 TCTLNKEENEENINWFLKKHKNFKIEPLYYGDVDNIIYHKEGFVSILP-NDKMDGFFIAK 438
Query: 524 L 524
L
Sbjct: 439 L 439
>gi|319947546|ref|ZP_08021776.1| RNA methyltransferase Sun [Streptococcus australis ATCC 700641]
gi|319746234|gb|EFV98497.1| RNA methyltransferase Sun [Streptococcus australis ATCC 700641]
Length = 440
Score = 185 bits (469), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 149/481 (30%), Positives = 235/481 (48%), Gaps = 51/481 (10%)
Query: 52 NLNLEVSPHRAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRD 111
NL ++ R V+ L I GAF+++ KK G L D D
Sbjct: 3 NLVNKMQTAREVALSTLGEIFQDGAFSNISLKKSLGKAT----------------LSDVD 46
Query: 112 LRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYA 170
LVT+IV GT+ + L+ + D ++P + +L + Y+ V L+ +P +A
Sbjct: 47 KSLVTEIVYGTVSRKLTLEWYLSHFVADR---DQVDPWIYHLLLMSLYQFVYLEKIPLHA 103
Query: 171 VVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHP 230
VV E V LAK + G+ VN +LRK+ L++ LP ++ R R L+ YS P
Sbjct: 104 VVHEAVELAK-QRKKGSEKYVNALLRKM--LREE----LPSIDQIKRINKR-LSIRYSLP 155
Query: 231 VWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELS 290
VW+V++ G+E AI + SL ++ V DL + ++ +
Sbjct: 156 VWLVKKLMDEYGEERAIAIFE--------SLYVRNKASVRVVDLDKKEDIKE-------Q 200
Query: 291 LHLDEFIRVKTGL--QNVIQAG--LLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAP 346
L + + T L +N AG K+G +QDE++ LV ++ QP ++D CAAP
Sbjct: 201 LQASDSLLASTALVKENGYFAGSDYFKQGKLTIQDETSQLVAPALEVQPSDQVLDACAAP 260
Query: 347 GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADL-RTFADNSTV 405
GGKT ++AS L G V A+D+ +L+++ E A+ V I+T D + F
Sbjct: 261 GGKTTHLASYLV-DGQVTALDLYDHKLQLIQENAERLGVADKIQTKKLDASKVFEAFGAD 319
Query: 406 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465
DK+L+DAPCSG+G++ ++ D+++N+ D L+ +Q E+LD V+ G++VYST
Sbjct: 320 AFDKILVDAPCSGIGLIRRKPDIKYNKDNADFASLQAIQLEILDGVCQSVRKDGIIVYST 379
Query: 466 CSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARLV 525
C+I EEN + V+ FL HP F + P D + K G P + DG F +R
Sbjct: 380 CTIIGEENFDVVDQFLETHPNFELVPLDH--ERKDILKDGCILITPELYGSDGFFISRFR 437
Query: 526 R 526
R
Sbjct: 438 R 438
>gi|408356908|ref|YP_006845439.1| rRNA methyltransferase [Amphibacillus xylanus NBRC 15112]
gi|407727679|dbj|BAM47677.1| putative rRNA methyltransferase [Amphibacillus xylanus NBRC 15112]
Length = 452
Score = 185 bits (469), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 131/436 (30%), Positives = 221/436 (50%), Gaps = 39/436 (8%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD 165
D +D L T++V GT++ + LD+ + K +E + +L + FY++ LD
Sbjct: 36 DWAHKDQALFTELVYGTLQRKLTLDYFLNHFVDPNK---KVEKWVKWLLYLSFYQMHYLD 92
Query: 166 -MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P +A++ E V +AK G VNG+LR+ PL + L+
Sbjct: 93 KIPDHAIIHEAVEIAKQKGHQGIAKFVNGVLRE----AQRQGFPLF---DTIKDPIERLS 145
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQ 284
SHP W+V RW G+E+ + N S+R NS K +TR + + QL +
Sbjct: 146 IETSHPYWLVERWIDSYGEEQTEAMCKANLETKPISVRVNSLK-LTRDEAIEQLTHDGFE 204
Query: 285 VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 344
V + SL ++ I ++ G +++ L K G +QD+S+ LVV ++D + Q ++D C+
Sbjct: 205 V--KASLFSNQGIIIEKG--HILDHPLFKSGSLTIQDQSSMLVVEMLDIKQDQIVLDACS 260
Query: 345 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETA-KLHQVNSVIRTIHADLRTFADNS 403
APGGK ++ L+ G VYA D+++ ++ ++ A +L +N I T D R
Sbjct: 261 APGGKATHIGEKLNNTGRVYAYDLHQKKVNLVKRKAEQLGLIN--ISTAAIDGRQLNQKY 318
Query: 404 TVKC-DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLV 462
+ D++L+DAPCSG GV+ + D+++ + +D++ L +Q ELL+ + L+K G L+
Sbjct: 319 EPETFDRILVDAPCSGFGVIRTKPDIKYAKTAKDVDNLAHVQYELLEKIAPLLKKNGKLL 378
Query: 463 YSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKH-------- 514
YSTC++DP ENE V FL+ + + +DP DF + F + I+H
Sbjct: 379 YSTCTVDPTENEVVVTEFLINNQRYEVDP-------DFFKELPEFLNKEIEHLQVGIQIF 431
Query: 515 ----SLDGAFAARLVR 526
+ DG F R+ R
Sbjct: 432 PNEFNSDGFFLTRIRR 447
>gi|302872122|ref|YP_003840758.1| sun protein [Caldicellulosiruptor obsidiansis OB47]
gi|302574981|gb|ADL42772.1| sun protein [Caldicellulosiruptor obsidiansis OB47]
Length = 423
Score = 185 bits (469), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 122/411 (29%), Positives = 216/411 (52%), Gaps = 19/411 (4%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
F K +++D L ++V G +R++ +D+ I + + +L ILR+ YE+
Sbjct: 21 FHQKLKNEKDRALFVELVHGVLRYKNLIDYYINFVTKK----GVKDKRILNILRVATYEL 76
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
+ L+ +P YA V+E +A + P VN ILR ++ K+ L K++ D
Sbjct: 77 LFLEKIPEYATVNEACEVAS-KISPHLKAFVNAILRNIIRNKNQIQESLEKIKDVDYKSY 135
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
++ S+P++++ + G E+ +K++ + N+ P S++ N++K + L+ +L+
Sbjct: 136 ISIKL--SYPIFLIDYLEESYGFEKTLKILEFLNTKPPQSIKINTKKTDVKV-LIQELD- 191
Query: 281 LKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAV--VDPQPGQS 338
K +E++ + E I V G N+ + L K+G QD ++ LVV + D + +
Sbjct: 192 -KNGFEYEINFYNQEVIYVLKG--NIKETELYKKGYFYFQDLASSLVVKLNQEDFKEARK 248
Query: 339 IVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT 398
++D CAAPGGKT A + G V A DIN +L +L E +++I +D
Sbjct: 249 VIDLCAAPGGKTFNCAEVIDG--FVVACDINDHKLDVLRENILRLGFDNII-VAKSDAEV 305
Query: 399 FADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPG 458
F + + D V+ D PC+G G + K+ D++WN+ +D+E L LQ +LD A+ +K G
Sbjct: 306 FNPDFAGRFDIVIADLPCTGFGAIRKKPDIKWNKSYQDIENLHELQVRILDNAASYLKRG 365
Query: 459 GVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFS 509
G+L YSTC++ +ENE V FL +H +FS+ + P +F GF+ +
Sbjct: 366 GLLFYSTCTLGRKENEGTVLKFLDKHKDFSLVSQTTIFPDEFKC-DGFYIA 415
>gi|27467810|ref|NP_764447.1| RNA-binding Sun protein [Staphylococcus epidermidis ATCC 12228]
gi|293366818|ref|ZP_06613494.1| RNA methyltransferase Sun [Staphylococcus epidermidis
M23864:W2(grey)]
gi|417656552|ref|ZP_12306235.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis VCU028]
gi|417658902|ref|ZP_12308515.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis VCU045]
gi|417909812|ref|ZP_12553545.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis VCU037]
gi|418605430|ref|ZP_13168755.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis VCU041]
gi|418606347|ref|ZP_13169628.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis VCU057]
gi|418609800|ref|ZP_13172934.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis VCU065]
gi|418616486|ref|ZP_13179410.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis VCU120]
gi|418622181|ref|ZP_13184937.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis VCU123]
gi|418628991|ref|ZP_13191507.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis VCU127]
gi|418664830|ref|ZP_13226296.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis VCU081]
gi|419768657|ref|ZP_14294773.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus IS-250]
gi|419772571|ref|ZP_14298602.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus IS-K]
gi|420182887|ref|ZP_14689020.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIHLM049]
gi|420187578|ref|ZP_14693598.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIHLM039]
gi|420197109|ref|ZP_14702833.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIHLM020]
gi|420202069|ref|ZP_14707664.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIHLM018]
gi|420214303|ref|ZP_14719582.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIH05005]
gi|420216133|ref|ZP_14721355.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIH05001]
gi|420219998|ref|ZP_14724988.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIH04008]
gi|420227008|ref|ZP_14731781.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIH05003]
gi|420229330|ref|ZP_14734036.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIH04003]
gi|420231689|ref|ZP_14736334.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIH051668]
gi|27315354|gb|AAO04489.1|AE016746_279 RNA-binding Sun protein [Staphylococcus epidermidis ATCC 12228]
gi|291319119|gb|EFE59489.1| RNA methyltransferase Sun [Staphylococcus epidermidis
M23864:W2(grey)]
gi|329736213|gb|EGG72485.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis VCU028]
gi|329736541|gb|EGG72807.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis VCU045]
gi|341652421|gb|EGS76209.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis VCU037]
gi|374402527|gb|EHQ73552.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis VCU041]
gi|374406136|gb|EHQ77039.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis VCU065]
gi|374408300|gb|EHQ79131.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis VCU057]
gi|374410276|gb|EHQ81037.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis VCU081]
gi|374820564|gb|EHR84640.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis VCU120]
gi|374827556|gb|EHR91418.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis VCU123]
gi|374834985|gb|EHR98616.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis VCU127]
gi|383359198|gb|EID36628.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus IS-K]
gi|383359483|gb|EID36906.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus IS-250]
gi|394249350|gb|EJD94563.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIHLM049]
gi|394256020|gb|EJE00956.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIHLM039]
gi|394265916|gb|EJE10562.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIHLM020]
gi|394270042|gb|EJE14565.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIHLM018]
gi|394283668|gb|EJE27833.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIH05005]
gi|394287005|gb|EJE30979.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIH04008]
gi|394292583|gb|EJE36325.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIH05001]
gi|394297509|gb|EJE41106.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIH05003]
gi|394299096|gb|EJE42647.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIH04003]
gi|394302231|gb|EJE45679.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIH051668]
Length = 435
Score = 185 bits (469), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 129/420 (30%), Positives = 222/420 (52%), Gaps = 38/420 (9%)
Query: 104 TKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTF--SSMEPLLLQILRIGFYEI 161
T +++ D L T++V GTI+ + LD+L+ K F + ++ + Q+L + Y+
Sbjct: 33 TNNINTVDKNLFTELVYGTIKRKYTLDYLL-------KPFIKTKIKSWVRQLLWMSLYQY 85
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
+ LD +P +A++ E V +AK GN+VNGILR ++ + LP E D +
Sbjct: 86 LYLDKIPNHAIIHEAVDIAKKRGGFHTGNIVNGILRTVMRTE------LPSFEDIDDTKK 139
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
R +A YS P W+V W + G E+ + + ++RAN ++R + ++
Sbjct: 140 R-IAIQYSLPKWIVDHWVTHFGVEKTENIARSFLEPVTTTVRAN----ISRDSIDSIISK 194
Query: 281 LKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIV 340
L+ + H + F +G+ V+ + KEG ++QD+S+ +V V++ ++
Sbjct: 195 LEQEGYHVKKDDMLPFCLHISGMP-VVNSNAFKEGYISIQDKSSMMVAYVMNLGRDDKVL 253
Query: 341 DCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 400
D C+APGGK +MA LS +G V A DI++ ++ ++ + K ++N+ I+ D
Sbjct: 254 DACSAPGGKACHMAEILSPEGHVDATDIHEHKINLIKQNIKKLKLNN-IKAFQHDATEVY 312
Query: 401 DNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGV 460
D DK+L+DAPCSGLGVL + ++++++ ++ L LQ ++L+ +KPGG
Sbjct: 313 DKM---YDKILVDAPCSGLGVLRHKPEIKYSQSQNSIKSLVELQLQILENVKDNIKPGGT 369
Query: 461 LVYSTCSIDPEENEERVEAFLLRHPEFSID----PADG-------LVPSDFVTKHGFFFS 509
+VYSTC+I+ ENE + FL RH +F + PA G ++P DF GFF S
Sbjct: 370 IVYSTCTIEQMENENVIYTFLKRHKDFEFEPFQNPATGEQVKTLQILPQDF-NSDGFFIS 428
>gi|420165246|ref|ZP_14671950.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIHLM088]
gi|394236413|gb|EJD81947.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIHLM088]
Length = 435
Score = 185 bits (469), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 129/420 (30%), Positives = 222/420 (52%), Gaps = 38/420 (9%)
Query: 104 TKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTF--SSMEPLLLQILRIGFYEI 161
T +++ D L T++V GTI+ + LD+L+ K F + ++ + Q+L + Y+
Sbjct: 33 TNNINTVDKNLFTELVYGTIKRKYTLDYLL-------KPFIKTKIKSWVRQLLWMSLYQY 85
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
+ LD +P +A++ E V +AK GN+VNGILR ++ + LP E D +
Sbjct: 86 LYLDKIPNHAIIHEAVDIAKKRGGFHTGNIVNGILRTVMRTE------LPSFEDIDDTKK 139
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
R +A YS P W+V W + G E+ + + ++RAN ++R + ++
Sbjct: 140 R-IAIQYSLPKWIVDHWVTHFGVEKTENIARSFLEPVTTTVRAN----ISRDSIDSIISK 194
Query: 281 LKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIV 340
L+ + H + F +G+ V+ + KEG ++QD+S+ +V V++ ++
Sbjct: 195 LEQEGYHVKKDDMLPFCLHISGMP-VVNSNAFKEGYISIQDKSSMMVAYVMNLGRDDKVL 253
Query: 341 DCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 400
D C+APGGK +MA LS +G V A DI++ ++ ++ + K ++N+ I+ D
Sbjct: 254 DACSAPGGKACHMAQILSPEGHVDATDIHEHKINLIKQNIKKLKLNN-IKAFQHDATEVY 312
Query: 401 DNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGV 460
D DK+L+DAPCSGLGVL + ++++++ ++ L LQ ++L+ +KPGG
Sbjct: 313 DKM---YDKILVDAPCSGLGVLRHKPEIKYSQSQNSIKSLVELQLQILENVKDNIKPGGT 369
Query: 461 LVYSTCSIDPEENEERVEAFLLRHPEFSID----PADG-------LVPSDFVTKHGFFFS 509
+VYSTC+I+ ENE + FL RH +F + PA G ++P DF GFF S
Sbjct: 370 IVYSTCTIEQMENENVIYTFLKRHKDFEFEPFQNPATGEQVKTLQILPQDF-NSDGFFIS 428
>gi|168182584|ref|ZP_02617248.1| ribosomal RNA small subunit methyltransferase B [Clostridium
botulinum Bf]
gi|182674127|gb|EDT86088.1| ribosomal RNA small subunit methyltransferase B [Clostridium
botulinum Bf]
Length = 442
Score = 185 bits (469), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 128/421 (30%), Positives = 222/421 (52%), Gaps = 17/421 (4%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD 165
+L D D L+T+IV GT++++ LD I + + +M+ ++ ILRI Y+I LD
Sbjct: 34 NLKDNDKALITEIVYGTLKYKETLD--IIIQSYLRNPIKTMDKNIINILRITIYQIRYLD 91
Query: 166 -MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P +A V+E V ++K + LVNG+LR + N + R +
Sbjct: 92 KIPSFAAVNEAVEMSK-KISIKYSKLVNGVLRNYIRTYKNKKFY------DHRNNLEKFS 144
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQ 284
+YS+P W+++ + G E A K++ N P+ ++R N+ K + + +L
Sbjct: 145 FMYSYPKWLIKMFISQYGIEIAEKILKGLNERPNITVRVNNLK-IDYDEAFEKLGEYGYN 203
Query: 285 VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 344
+ E E I++ G +N+ + L EG VQDESA LV ++ ++D C+
Sbjct: 204 I--EEGYICPEAIQIIKG-KNIEKNPLFIEGNITVQDESAMLVAPSMELDEESIVLDLCS 260
Query: 345 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNST 404
APGGKT +++ ++ + VYA DI++ +L ++ AK + + I T D F
Sbjct: 261 APGGKTTHISEIMNNKSKVYAYDIHQNKLSLIESNAKRLGIKN-IETDVGDAAVFNKKLK 319
Query: 405 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464
K +VL+D PCSGLG++ K+ +++W + +++ + +Q ++++ + +K GG+L+YS
Sbjct: 320 EKAHRVLMDVPCSGLGIIRKKPEIKWTKNEREIKNIIDIQRKIMNNGASYLKEGGILLYS 379
Query: 465 TCSIDPEENEERVEAFLLRHPEFSIDP-ADGLVPSDFVTKHGFFFSDPIKHSLDGAFAAR 523
TC+++ EENEE + FL +H F I+P G V + K GF P +DG F A+
Sbjct: 380 TCTLNKEENEENINWFLKKHKNFKIEPLYYGDVDNIIYHKEGFVSILP-NDKMDGFFIAK 438
Query: 524 L 524
L
Sbjct: 439 L 439
>gi|329120994|ref|ZP_08249625.1| RNA methyltransferase Sun [Dialister micraerophilus DSM 19965]
gi|327471156|gb|EGF16610.1| RNA methyltransferase Sun [Dialister micraerophilus DSM 19965]
Length = 448
Score = 185 bits (469), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 133/429 (31%), Positives = 221/429 (51%), Gaps = 22/429 (5%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
F++ L RD L+T++V G R YL +++ L + ++ + + + +L +G Y++
Sbjct: 37 FKSHKLLSRDKALITELVYGICRKCNYLQYIVEKLSN--RSINKIHKSVRILLYLGLYQL 94
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKD--NNSLPLPKLEGNDRA 218
+ LD +P A V+E V+L K G VN ILR + K N+ L K E
Sbjct: 95 IYLDKIPESAAVNETVKLTKKITHQGNVRFVNAILRNFLRKKAEINDFSKLSKFE----- 149
Query: 219 QARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQL 278
L+ IY+ P+W++++W K G + +++ N + +R N K +T DL+
Sbjct: 150 ---KLSLIYNQPIWLIQKWNKDYGINKTKEILQAFNLPENLFVRCNELK-ITTNDLIKIF 205
Query: 279 NLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQS 338
+ K++ + + +K G+ N+ + LL++G +Q S+ + +DP+P +
Sbjct: 206 DENKIE--YSGVENFPNIFLIKNGV-NLFKTDLLEKGYIFIQSISSIIPAYALDPKPYEK 262
Query: 339 IVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT 398
++D CAAPG KT +A + +G + A D+ +++++ E V V + D
Sbjct: 263 VLDMCAAPGSKTTQIAQLMDNKGSIDAWDLYPHKIKLIEENINRLGVKIVTPKLQ-DATK 321
Query: 399 FADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPG 458
T + DKVLLDAPCSGLGVL + +LRW R E +E L Q +LL AS VK G
Sbjct: 322 LLPTLTGQYDKVLLDAPCSGLGVLGHKPELRWRRTEETIESLISTQKDLLKCASTYVKKG 381
Query: 459 GVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFV-TKHGFFFSDPIKHSLD 517
G LVYSTC+++ ENE+ V+ FL + EF + D + +D + +++G P D
Sbjct: 382 GTLVYSTCTLNINENEKIVDWFLNQKKEFYL---DSIAVNDIINSENGMLTLWPDTLKSD 438
Query: 518 GAFAARLVR 526
G F A+ R
Sbjct: 439 GFFIAKFKR 447
>gi|395243947|ref|ZP_10420925.1| Ribosomal RNA small subunit methyltransferase B [Lactobacillus
hominis CRBIP 24.179]
gi|394483779|emb|CCI81933.1| Ribosomal RNA small subunit methyltransferase B [Lactobacillus
hominis CRBIP 24.179]
Length = 438
Score = 185 bits (469), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 131/425 (30%), Positives = 221/425 (52%), Gaps = 27/425 (6%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD 165
+L D L T IV GTI+++ YL++ + L ++PLLL + Y+ L+
Sbjct: 35 NLSHTDKALATKIVYGTIQYKIYLEYQLKPLIKTRLKDKFIKPLLL----MSAYQYFFLE 90
Query: 166 -MPPYAVVDENVRLAKVALRPGAGN--LVNGILRKLVLLKDNNSLPLPKLEGNDRAQARA 222
+P A+ DE +LAK + +G+ LVNGILR L D LP+ + + +
Sbjct: 91 KVPTNAIFDEANKLAKSFGKKNSGSYRLVNGILRSL----DRRGEILPQ----KQDEIKY 142
Query: 223 LATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLK 282
L+ YS+P W+V+ + G + +++ N S+R + + + L K
Sbjct: 143 LSVKYSYPEWLVKYLIEQFGSKTGPEILESGNKAIPVSIRITANGQLQEVEQA----LTK 198
Query: 283 LQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 342
+ + L+ D + V G V++ L KEG +QD +A L V D + ++D
Sbjct: 199 EKFEYRLTPLTDHNLFVHPG--QVVKTDLFKEGKITIQDSAASLAVDAFDFNGDEKVLDA 256
Query: 343 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN 402
CAAPGGKT+ +A L G V A+DI++ +L ++ AK +V+ ++T D R D
Sbjct: 257 CAAPGGKTVQIAEHLI-TGTVTALDIHENKLSLIKNAAKRLKVSEKVKTKACDARLAKDY 315
Query: 403 -STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVL 461
S + DK+L+DAPCSGLG++ ++ ++R+ + L D+E L +Q ++L++ + L+ G L
Sbjct: 316 FSQKQFDKILVDAPCSGLGLIRRKPEIRYEKSLADIEHLSKIQLDILNSVAPLLVENGEL 375
Query: 462 VYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFA 521
VYSTC+I +E+E+ VE FL HP+F + + + K P ++ DG F
Sbjct: 376 VYSTCTITKQEDEDVVENFLQMHPDFELTT----IQVGNLDKQKMVKILPNQYDSDGFFI 431
Query: 522 ARLVR 526
A+ ++
Sbjct: 432 AKFIK 436
>gi|433655119|ref|YP_007298827.1| ribosomal RNA small subunit methyltransferase RsmB
[Thermoanaerobacterium thermosaccharolyticum M0795]
gi|433293308|gb|AGB19130.1| ribosomal RNA small subunit methyltransferase RsmB
[Thermoanaerobacterium thermosaccharolyticum M0795]
Length = 447
Score = 185 bits (469), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 127/440 (28%), Positives = 224/440 (50%), Gaps = 20/440 (4%)
Query: 94 GYVERTLG--FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLL 151
GY+ L ++ D D + +IV GTI + LD +I C K ++ +L
Sbjct: 19 GYLNIVLNKYLNNNEIADVDRSFIKEIVFGTIERKYTLDRIIDY-CS-TKDIEKIDNKVL 76
Query: 152 QILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLP 210
IL +G ++++ +D +P YA ++E+V L K + A VN +LR L+++ + P
Sbjct: 77 IILEMGLFQLMYMDKVPDYAAINESVNLTKEHVGKYASKFVNAVLRSY--LRNSMKIKFP 134
Query: 211 KLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVT 270
+ + N + YS P W+V+R ++ ++ N P SLR N+ K +
Sbjct: 135 QPDEN---LIEYFSIKYSFPEWIVKRLLNNYDRDATESILESLNDKPEISLRLNTLK-IG 190
Query: 271 RADLVMQLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAV 330
+ + +LN L+ L + +I L+N+ + KEGL VQDE A ++ V
Sbjct: 191 KEEFEKKLNERGLKYRKGLYNNDAYYI----DLRNITNDEMYKEGLIQVQDEGAMIISKV 246
Query: 331 VDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIR 390
+ P+P ++D C+APGGKT +++ ++ +G + A DI + ++ ++ + +++V
Sbjct: 247 LSPKPDDMVMDVCSAPGGKTTHLSQLMNNKGKIVAFDIYEHKIDLIKRNCRRLGIDNVDA 306
Query: 391 TIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRW-NRRLEDMEELKILQDELLD 449
+ + ++ K DKVL+D PCSG+G++ K+ D++ N +D EEL +Q +L
Sbjct: 307 FVFDSTKVNSE-YIDKADKVLVDVPCSGIGIIRKKPDIKLKNYTKKDFEELNNIQYRILS 365
Query: 450 AASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVP---SDFVTKHGF 506
++S VK GG ++YSTC+I EEN V+ FL + EF I +P + +V G
Sbjct: 366 SSSKYVKRGGYILYSTCTIGREENMNIVDKFLNENKEFKISDIRSFLPEKLTSYVDDRGC 425
Query: 507 FFSDPIKHSLDGAFAARLVR 526
P ++ DG F ++ R
Sbjct: 426 IQLLPNINNTDGFFICKMQR 445
>gi|392948710|ref|ZP_10314313.1| Ribosomal RNA small subunit methyltransferase B [Lactobacillus
pentosus KCA1]
gi|392435987|gb|EIW13908.1| Ribosomal RNA small subunit methyltransferase B [Lactobacillus
pentosus KCA1]
Length = 447
Score = 185 bits (469), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 135/427 (31%), Positives = 220/427 (51%), Gaps = 46/427 (10%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDH-LICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD 165
+D RD+ L+T++V G I+ R L+ L + H + ++P + ++L Y+ LD
Sbjct: 38 MDRRDINLLTNMVYGVIQHRLTLEFWLKPFVRHPHQ----LDPWVRELLLSALYQWQYLD 93
Query: 166 -MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLP-LPKLEGNDRAQARAL 223
+P AV +E + +AKV PG V G+L ++ D + LP +E D L
Sbjct: 94 KIPQRAVFNETIEIAKVKGHPGIRRFVTGVLHQM----DRSGLPAFDTIEDPDER----L 145
Query: 224 ATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKL 283
+ YS PVW+++ + LG + ++ N SLR N+ T +D+ L L
Sbjct: 146 SVTYSMPVWLIQELRRQLGATKMEAIIASLNQPAKQSLRVNTALS-TVSDVTTALTNAGL 204
Query: 284 QV-PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 342
V P ++S V T Q I ++ G+ VQDESA LVV ++PQPG ++D
Sbjct: 205 TVEPSKIS----PLGLVVTDGQ-AINTEAMRYGMFTVQDESAQLVVPALNPQPGDRVLDA 259
Query: 343 CAAPGGKTLYMASCLSGQ--GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR--- 397
CAAPGGKT +A+ L G V A+DI+ ++R++ + A V + D R
Sbjct: 260 CAAPGGKTTQIAAELDADAGGEVVALDIHANKVRLIGQNAARMHVADRVAATELDARKVQ 319
Query: 398 -TFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVK 456
F D S D++L+DAPCSGLG++ ++ ++R+ ++L+D L+ +Q +L A + +K
Sbjct: 320 TQFDDES---FDRILVDAPCSGLGLMRRKPEIRYEKQLQDSLNLQKIQLAILTAVAPTLK 376
Query: 457 PGGVLVYSTCSIDPEENEERVEAFLLRHPEFSI--------------DPADGLVPSDFVT 502
GG++ YSTC+I +EN++ + FL HPEF + D + P D+++
Sbjct: 377 KGGIMTYSTCTILQQENQDVIVKFLADHPEFELQTTPTEQDLKADRTDKTLSIYPDDYLS 436
Query: 503 KHGFFFS 509
GFF +
Sbjct: 437 D-GFFIA 442
>gi|237795946|ref|YP_002863498.1| ribosomal RNA small subunit methyltransferase B [Clostridium
botulinum Ba4 str. 657]
gi|229261794|gb|ACQ52827.1| ribosomal RNA small subunit methyltransferase B [Clostridium
botulinum Ba4 str. 657]
Length = 442
Score = 185 bits (469), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 128/421 (30%), Positives = 222/421 (52%), Gaps = 17/421 (4%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD 165
+L D D L+T+IV GT++++ LD I + + +M+ ++ ILRI Y+I LD
Sbjct: 34 NLKDNDKALITEIVYGTLKYKETLD--IIIQSYLRNPIKTMDKNIINILRITIYQIRYLD 91
Query: 166 -MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P +A V+E V ++K + LVNG+LR + N + R +
Sbjct: 92 KIPSFAAVNEAVEMSK-KISIKYSKLVNGVLRNYIRTYKNKKFY------DHRNNLEKFS 144
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQ 284
+YS+P W+++ + G E A K++ N P+ ++R N+ K + + +L
Sbjct: 145 FMYSYPKWLIKMFISQYGIEIAEKILKGLNERPNITVRVNNLK-IDYDEAFEKLGEYGYN 203
Query: 285 VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 344
+ E E I++ G +N+ + L EG VQDESA LV ++ ++D C+
Sbjct: 204 I--EEGYICPEAIQIIKG-KNIEKNPLFIEGNITVQDESAMLVAPSMELDEESIVLDLCS 260
Query: 345 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNST 404
APGGKT +++ ++ + VYA DI++ +L ++ AK + + I T D F
Sbjct: 261 APGGKTTHISEIMNNKSKVYAYDIHQNKLSLIESNAKRLGIKN-IETDVGDAAVFNKKLK 319
Query: 405 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464
K +VL+D PCSGLG++ K+ +++W + +++ + +Q ++++ + +K GG+L+YS
Sbjct: 320 EKAHRVLMDVPCSGLGIIRKKPEIKWTKNEREIKNIIDIQRKIMNNGASYLKEGGILLYS 379
Query: 465 TCSIDPEENEERVEAFLLRHPEFSIDP-ADGLVPSDFVTKHGFFFSDPIKHSLDGAFAAR 523
TC+++ EENEE + FL +H F I+P G V + K GF P +DG F A+
Sbjct: 380 TCTLNKEENEENINWFLKKHKNFKIEPLYYGDVDNIIYHKEGFVSILP-NDKMDGFFIAK 438
Query: 524 L 524
L
Sbjct: 439 L 439
>gi|329921088|ref|ZP_08277611.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
iners SPIN 1401G]
gi|328934995|gb|EGG31484.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
iners SPIN 1401G]
Length = 437
Score = 185 bits (469), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 130/417 (31%), Positives = 221/417 (52%), Gaps = 35/417 (8%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPY 169
D L T IV GT++++ YL++ + L + + PLLL + Y+ LD +P
Sbjct: 40 DKALTTQIVYGTVQYKLYLEYQLKSLVKTKLKEDYLWPLLL----MSAYQYFFLDKIPTA 95
Query: 170 AVVDENVRLAKVALRPGAGN--LVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIY 227
++VDE +LAK G+ + LVNGILR LV + LP E D Q ++ Y
Sbjct: 96 SIVDEANKLAKSYSPKGSQSYRLVNGILRSLV--RRGEILP----EEKDDVQYMSIK--Y 147
Query: 228 SHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPH 287
S+P W+V+ G+ + I ++ N S+R +++ D ++ KL +
Sbjct: 148 SYPQWLVKYCLDNFGKAKTISILQAGNMPSVNSIRI---ADMSKKDEILH----KLTTEY 200
Query: 288 ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPG 347
++S+ V ++ + L K+GL +QD +A LVV + + + ++D C+APG
Sbjct: 201 KISISNLTNHNVNLDHGSITNSQLFKDGLITIQDSAASLVVDAFNFKGDEKVLDACSAPG 260
Query: 348 GKTLYMASCLSGQGLVYAIDINKGRLRILNET-AKLHQVNSVIRTIHADLRTFADNSTVK 406
GKT +A L+ G V+A+DI++ +L ++ +T +LHQ +I + +
Sbjct: 261 GKTAQIAEYLT-TGKVFALDIHQKKLNLVKQTLTRLHQDQKLIMKALDARKVNEYFFGQQ 319
Query: 407 CDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTC 466
DK+L+DAPCSGLG++ ++ ++R+ +++ED++ L +Q +LD + L+ G LVYSTC
Sbjct: 320 FDKILVDAPCSGLGLIRRKPEVRYEKQMEDLKHLSEIQYNILDHVAGLLAENGELVYSTC 379
Query: 467 SIDPEENEERVEAFLLRHPEFSIDPAD----------GLVPSDFVTKHGFFFSDPIK 513
+I EENE+ V+ FL HP+FS+ P + + P D+ GFF + +K
Sbjct: 380 TISIEENEDVVKRFLTNHPDFSLAPFEVGNLSKCKMIKIFPDDY-NSDGFFIAKFVK 435
>gi|238921411|ref|YP_002934926.1| ribosomal RNA small subunit methyltransferase B, putative
[Edwardsiella ictaluri 93-146]
gi|238870980|gb|ACR70691.1| ribosomal RNA small subunit methyltransferase B, putative
[Edwardsiella ictaluri 93-146]
Length = 430
Score = 185 bits (469), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 133/416 (31%), Positives = 217/416 (52%), Gaps = 28/416 (6%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
+ L ++D L+ ++ GT+R L+ ++ L K + + L +L +G Y++V
Sbjct: 35 QSLSEKDRALLQELCFGTLRVLPQLEWILQQLM--AKVLTGKQRTLHYLLMVGLYQLVYT 92
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+PP+A + E V A RP L+NG+LR+ + +L L Q++ A
Sbjct: 93 RIPPHAALAETVDGATALKRPQLKGLINGVLRQFQ--RQQEALLL---------QSQQHA 141
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQ 284
+ + HP W+++R ++ E+ ++ NN P LR N R A L +
Sbjct: 142 SHWLHPSWLLKR-LQHAYPEQWPAIVEANNQRPPMWLRVNRRHHTRDAYLTLLQQAGIEA 200
Query: 285 VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 344
V H+ + + IR+ Q V + + G VQD SA V ++DPQ + I+D C
Sbjct: 201 VAHD---YFPDAIRLLVA-QPVTRLPGFEHGWVTVQDASAQHSVDLLDPQDSEQILDLCC 256
Query: 345 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-NS 403
APGGKT ++ + + V A+D+++ RL+ + E + Q ++ IR D RT + S
Sbjct: 257 APGGKTTHILEA-APKAHVLAVDVDETRLKRVRENLQRLQQHAEIRC--GDGRTPDEWAS 313
Query: 404 TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463
+ D++LLDAPCS GV+ + D++W RR D+ EL LQ E++DA +K GGV+VY
Sbjct: 314 GRQFDRILLDAPCSATGVIRRHPDIKWLRRDSDITELAALQREIIDAVWPFLKSGGVMVY 373
Query: 464 STCSIDPEENEERVEAFLLRHPEFSI-DPADGLVPS-DFVTK----HGFFFSDPIK 513
+TCSI P+EN+E++ FL RHP+ + D D P F+ + GFF++ IK
Sbjct: 374 ATCSILPQENQEQILTFLSRHPDARLSDTGDIQRPGLQFLPRPDAGDGFFYTKLIK 429
>gi|187933697|ref|YP_001885416.1| ribosomal RNA small subunit methyltransferase B [Clostridium
botulinum B str. Eklund 17B]
gi|187721850|gb|ACD23071.1| ribosomal RNA small subunit methyltransferase B [Clostridium
botulinum B str. Eklund 17B]
Length = 438
Score = 185 bits (469), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 145/431 (33%), Positives = 232/431 (53%), Gaps = 40/431 (9%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD 165
+L++RD L+T+IV G +R ++ LD +I D K M+ +L ILR+ Y++ LD
Sbjct: 33 NLEERDKALLTEIVYGVLRRKKTLDLIIANFVRDIKL---MDHEVLNILRVAIYQMTFLD 89
Query: 166 -MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P YA +E V AK + P AG LVNGILR KD + + + GN + A
Sbjct: 90 KVPTYAACNEAVDEAK-KISPEAGKLVNGILRNFS--KDPDDITI---NGN---KINEYA 140
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQ 284
+S WM+R K G++ A K+MV N P ++R N K + V + L ++
Sbjct: 141 YKFSFEPWMIRLLIKQYGEDLAKKIMVGLNQIPQTTVRVNDTK--CEYNEVFE-KLEEIG 197
Query: 285 VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 344
E E I +K G ++ + L K+G VQDESA LV +++ + ++D C+
Sbjct: 198 YCVEEGFMCPEAILIKGG-SSIQENPLFKDGEITVQDESAMLVAPLLELENDMKVLDLCS 256
Query: 345 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSV------IRTIHADLRT 398
APGGKT ++A L G V A D+++ +L ++ E + +N+V ++ADL +
Sbjct: 257 APGGKTTHIAELLQNTGEVRAFDLHESKLGLIKENCERLDLNNVKIEVGDATKLNADLVS 316
Query: 399 FADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPG 458
+AD +VL+D PCSGLG++ K+ +++WN+ E++ E+ +Q E+++ A +K G
Sbjct: 317 YAD-------RVLIDVPCSGLGIIRKKPEIKWNKTRENLREIIPVQREIMNNAWEYLKNG 369
Query: 459 GVLVYSTCSIDPEENEERVEAFLLRHPE-----FSIDPADGLVPSDFVTKHGFFFSDPIK 513
GV++YSTC+++ EENEE +E FL H + I D L+ K+G P
Sbjct: 370 GVMIYSTCTLNKEENEENIEWFLNTHKDCKLKTIFIGKEDNLI----YNKNGTLTILP-N 424
Query: 514 HSLDGAFAARL 524
+DG F A+L
Sbjct: 425 AKMDGFFVAKL 435
>gi|227878882|ref|ZP_03996787.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus crispatus
JV-V01]
gi|227861516|gb|EEJ69130.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus crispatus
JV-V01]
Length = 427
Score = 185 bits (469), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 140/423 (33%), Positives = 222/423 (52%), Gaps = 36/423 (8%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPY 169
D L T+IV GTI++R +L++ + L + T ++PLLL + Y+++ LD +P
Sbjct: 28 DQNLATNIVYGTIQYRLFLEYQLKGLVRTKLTEKYIKPLLL----MSLYQLIFLDKVPDR 83
Query: 170 AVVDENVRLAK-VALRPGAG-NLVNGILRKL-----VLLKDNNSLPLPKLEGNDRAQARA 222
AV+DE +LAK R AG LVNGILR +L +NN + +
Sbjct: 84 AVLDEANKLAKQYGKRHSAGFRLVNGILRSFTRRGVILPAENNPV-------------KY 130
Query: 223 LATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLK 282
L+ S P W+V+ G ++A ++ N S+R + K + + QL
Sbjct: 131 LSVKESVPEWLVQYLIDNWGLDKAKSVLNSINEPAKNSVRIS--KLADKEQVFAQLERDN 188
Query: 283 LQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 342
Q P L D+ I G+ ++ L +EG +QDE+A LVV D + + ++D
Sbjct: 189 YQ-PQWSKLSSDDVILSHGGIS---ESDLFEEGKLTIQDEAASLVVEAFDFEQDEHVLDA 244
Query: 343 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD- 401
C+APGGKT+ +A + G V A+DI+ +LR++ + A+ V + ++T D R +
Sbjct: 245 CSAPGGKTVQIAESIVN-GDVTALDIHDKKLRLVRDNAQRMHVANKVKTKACDARKATEI 303
Query: 402 NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVL 461
+ + K+L+DAPCSGLG+L ++ ++R+ +R +D++ L+ +Q +L A S L+K G L
Sbjct: 304 FAAGEFTKILVDAPCSGLGLLRRKPEIRYTKRQQDLQNLQKIQLAILTAVSSLLKKNGEL 363
Query: 462 VYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFA 521
VYSTCSI EENEE V+ FL HP+F + P + +K G P DG F
Sbjct: 364 VYSTCSISMEENEEVVKKFLQAHPDFELVP---FKLTKLESKTGMLKIMPDLDGNDGFFI 420
Query: 522 ARL 524
A+
Sbjct: 421 AKF 423
>gi|226949860|ref|YP_002804951.1| ribosomal RNA small subunit methyltransferase B [Clostridium
botulinum A2 str. Kyoto]
gi|226843504|gb|ACO86170.1| ribosomal RNA small subunit methyltransferase B [Clostridium
botulinum A2 str. Kyoto]
Length = 442
Score = 185 bits (469), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 129/421 (30%), Positives = 221/421 (52%), Gaps = 17/421 (4%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD 165
+L D D L+T+IV GT++++ LD I + + +M+ ++ ILRI Y+I LD
Sbjct: 34 NLKDNDKALITEIVYGTLKYKETLD--IIIQSYLRNPIKTMDKNIVNILRITIYQIRYLD 91
Query: 166 -MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P +A V+E V ++K + LVNG+LR + N + R +
Sbjct: 92 KIPSFAAVNEAVEMSK-KISIKYSKLVNGVLRNYIRTYKNKKFY------DHRNNLEKFS 144
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQ 284
+YS+P W+++ + G E A K++ N P+ ++R N+ K D + L K
Sbjct: 145 FMYSYPKWLIKMFISQYGIEIAEKILKGLNERPNITVRVNNLK--IDYDEAFE-KLGKYG 201
Query: 285 VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 344
E E I++ G +N+ + L EG VQDESA LV ++ ++D C+
Sbjct: 202 YNIEEGYICPEAIQIIKG-KNIEKNPLFIEGNITVQDESAMLVAPSMELDEESIVLDLCS 260
Query: 345 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNST 404
APGGKT +++ ++ + VYA D+++ +L ++ AK + + I T D F
Sbjct: 261 APGGKTTHISEIMNNKSKVYAYDVHQNKLSLIESNAKRLGIKN-IETDVGDAAVFNKKLK 319
Query: 405 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464
K +VL+D PCSGLG++ K+ +++W + +++ + +Q ++++ + +K GG+L+YS
Sbjct: 320 EKAHRVLMDVPCSGLGIIRKKPEIKWTKNEREIKNIIAIQRKIMNNGASYLKEGGILLYS 379
Query: 465 TCSIDPEENEERVEAFLLRHPEFSIDP-ADGLVPSDFVTKHGFFFSDPIKHSLDGAFAAR 523
TC+++ EENEE + FL +H F I+P G V + K GF P +DG F A+
Sbjct: 380 TCTLNKEENEENINWFLKKHKNFKIEPLYYGDVDNIIYHKEGFVSILP-NDKMDGFFIAK 438
Query: 524 L 524
L
Sbjct: 439 L 439
>gi|420199003|ref|ZP_14704687.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIHLM031]
gi|394272689|gb|EJE17139.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIHLM031]
Length = 435
Score = 184 bits (468), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 128/424 (30%), Positives = 221/424 (52%), Gaps = 46/424 (10%)
Query: 104 TKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTF--SSMEPLLLQILRIGFYEI 161
T +++ D L T++V GT++ + LD+L+ K F + ++ + Q+L + Y+
Sbjct: 33 TNNINTVDKNLFTELVYGTLKRKYTLDYLL-------KPFIKTKIKSWVRQLLWMSLYQY 85
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
+ LD +P +A++ E V +AK GN+VNGILR ++ LP E D +
Sbjct: 86 LYLDKIPNHAIIHEAVDIAKKRGGYHTGNIVNGILRTVM------RTELPSFEDIDDTKK 139
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
R +A YS P W+V W + G E+ + + ++RAN +G + ++ +L
Sbjct: 140 R-IAIQYSLPKWIVDHWVTHFGIEKTENIAQSFLEPVATTVRANISRGSIDS-IISKLEQ 197
Query: 281 LKLQVPHE----LSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPG 336
QV + LH+ +GL V+ + KEG ++QD+S+ +V V++
Sbjct: 198 EGYQVKKDDMLPFCLHI-------SGLP-VVNSNAFKEGYISIQDKSSMMVAYVMNLGRD 249
Query: 337 QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADL 396
++D C+APGGK +MA LS +G V A DI++ ++ ++ + K ++N++ H
Sbjct: 250 DKVLDACSAPGGKACHMAEILSPEGHVDATDIHEHKINLIKQNIKKLKLNNIKAFQHDAT 309
Query: 397 RTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVK 456
+ DK+L+DAPCSGLGVL + ++++++ ++ L LQ ++L+ +K
Sbjct: 310 EVYNK----MYDKILVDAPCSGLGVLRHKPEIKYSQSQNSIKSLVELQLQILENVKDNIK 365
Query: 457 PGGVLVYSTCSIDPEENEERVEAFLLRHPEFSID----PADG-------LVPSDFVTKHG 505
PGG +VYSTC+I+ ENE + FL +H +F + PA G ++P DF G
Sbjct: 366 PGGTIVYSTCTIEQMENENVIYTFLKKHKDFEFEPFQNPATGEQVKTLQILPQDF-NSDG 424
Query: 506 FFFS 509
FF S
Sbjct: 425 FFIS 428
>gi|337283502|ref|YP_004622973.1| RNA methyltransferase Sun [Streptococcus parasanguinis ATCC 15912]
gi|387878759|ref|YP_006309062.1| RNA methyltransferase Sun [Streptococcus parasanguinis FW213]
gi|419800678|ref|ZP_14325947.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
parasanguinis F0449]
gi|335371095|gb|AEH57045.1| RNA methyltransferase Sun [Streptococcus parasanguinis ATCC 15912]
gi|385694409|gb|EIG25015.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
parasanguinis F0449]
gi|386792216|gb|AFJ25251.1| RNA methyltransferase Sun [Streptococcus parasanguinis FW213]
Length = 437
Score = 184 bits (468), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 136/428 (31%), Positives = 218/428 (50%), Gaps = 60/428 (14%)
Query: 107 LDDRDLRLVTDIVGGTI------RWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYE 160
L D+D VT++V GT+ W YL H+I +++T ++P + +L + Y+
Sbjct: 39 LSDKDRSFVTEVVYGTVARKITLEW--YLSHVI-----EDRT--KLDPWVYYLLMMSLYQ 89
Query: 161 IVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQ 219
+V LD +P +A+V+E VR+AK + + G+ VN ILRKL L++ LP ++ R
Sbjct: 90 LVYLDRIPDHAIVNEAVRIAK-SRKEGSEKFVNAILRKL--LREG----LPAVDTIKRKN 142
Query: 220 ARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLN 279
R + YS PVW+V+ + G+E A + SL ++ + DL +
Sbjct: 143 KR-YSVQYSLPVWLVKALIEEYGEERACAIFK--------SLYQRNKSSIRVVDLSEK-- 191
Query: 280 LLKLQVPHELSLHLDEFIRVKTGLQNVIQAG------LLKEGLCAVQDESAGLVVAVVDP 333
+L+ L+ + V G L KEG +QDES+ LV +D
Sbjct: 192 -------EKLAQELEASASLIASSALVKDQGHFAAHSLFKEGRITIQDESSQLVAPALDL 244
Query: 334 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETA-KLHQVNSVIRTI 392
Q + ++D CAAPGGKT ++AS L+ G V A+D+ +L+++ E A +LH + ++
Sbjct: 245 QGDEWVLDACAAPGGKTTHIASFLTT-GKVTALDLYDHKLKLIQENANRLHVADKILTKK 303
Query: 393 HADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAAS 452
R F DKVL+DAPCSG+G++ ++ D+++N+ D L+ +Q +LD+
Sbjct: 304 LDATRVFETFGPDAFDKVLVDAPCSGIGLIRRKPDIKYNKESVDFVSLQAIQLAILDSVC 363
Query: 453 LLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADG-----------LVPSDFV 501
V+ GG++VYSTC+I +EN E V+ FL HP F P D L+ +
Sbjct: 364 QSVRKGGIIVYSTCTIIGKENFEVVDRFLKSHPNFEQVPLDHKRKDILENNCILITPELY 423
Query: 502 TKHGFFFS 509
GFF S
Sbjct: 424 ESDGFFIS 431
>gi|417917958|ref|ZP_12561512.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
parasanguinis SK236]
gi|342829273|gb|EGU63631.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
parasanguinis SK236]
Length = 437
Score = 184 bits (468), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 133/422 (31%), Positives = 220/422 (52%), Gaps = 27/422 (6%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L D+D VT++V GT+ + L+ + + D + ++P L +L + Y++V LD
Sbjct: 39 LSDKDRSFVTEVVYGTVARKITLEWYLAHVIEDR---TKLDPWLYYLLMMSLYQLVYLDR 95
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P +A+V+E V++AK + G+ VN ILRKL L++ LP ++ R R +
Sbjct: 96 IPDHAIVNEAVQIAK-RRKEGSEKFVNAILRKL--LREG----LPAVDTIKRKNKR-YSV 147
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
YS PVW+V+ + G+E A + SL ++ + DL + L +L +
Sbjct: 148 EYSLPVWLVKALIEEYGEERACAIFK--------SLYQRNKSSIRVIDLDEKEELAQL-L 198
Query: 286 PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAA 345
SL + + G + L KEG +QDES+ LV +D Q + ++D CAA
Sbjct: 199 EATSSLFAPSALVKEQG--HFAAHSLFKEGRITIQDESSQLVAPALDLQGDEWVLDACAA 256
Query: 346 PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETA-KLHQVNSVIRTIHADLRTFADNST 404
PGGKT ++AS L+ G V A+D+ +L+++ E A +LH + ++ + F
Sbjct: 257 PGGKTTHLASYLTT-GKVTALDLYDHKLKLIQENANRLHVADKILTKKLDATKVFETFGP 315
Query: 405 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464
DK+L+DAPCSG+G++ ++ D+++N+ D L+ +Q +LD+ V+ GG++VYS
Sbjct: 316 DAFDKILVDAPCSGIGLIRRKPDIKYNKESADFVSLQAIQLAILDSVCQSVRKGGIIVYS 375
Query: 465 TCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARL 524
TC+I +EN E V+ FL HP F P D + K+ P + DG F +R
Sbjct: 376 TCTIMGKENFEVVDQFLKNHPNFEQVPLDH--ERKDILKNDCILITPELYGSDGFFISRF 433
Query: 525 VR 526
R
Sbjct: 434 KR 435
>gi|148380461|ref|YP_001255002.1| ribosomal RNA small subunit methyltransferase B [Clostridium
botulinum A str. ATCC 3502]
gi|153931256|ref|YP_001384684.1| ribosomal RNA small subunit methyltransferase B [Clostridium
botulinum A str. ATCC 19397]
gi|153936344|ref|YP_001388205.1| ribosomal RNA small subunit methyltransferase B [Clostridium
botulinum A str. Hall]
gi|168180610|ref|ZP_02615274.1| ribosomal RNA small subunit methyltransferase B [Clostridium
botulinum NCTC 2916]
gi|170756128|ref|YP_001782050.1| ribosomal RNA small subunit methyltransferase B [Clostridium
botulinum B1 str. Okra]
gi|148289945|emb|CAL84058.1| putative ribosomal RNA methyltransferase [Clostridium botulinum A
str. ATCC 3502]
gi|152927300|gb|ABS32800.1| ribosomal RNA small subunit methyltransferase B [Clostridium
botulinum A str. ATCC 19397]
gi|152932258|gb|ABS37757.1| ribosomal RNA small subunit methyltransferase B [Clostridium
botulinum A str. Hall]
gi|169121340|gb|ACA45176.1| ribosomal RNA small subunit methyltransferase B [Clostridium
botulinum B1 str. Okra]
gi|182668623|gb|EDT80602.1| ribosomal RNA small subunit methyltransferase B [Clostridium
botulinum NCTC 2916]
Length = 442
Score = 184 bits (468), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 127/421 (30%), Positives = 222/421 (52%), Gaps = 17/421 (4%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD 165
+L D D L+T+IV GT++++ LD I + + +M+ ++ ILRI Y+I LD
Sbjct: 34 NLKDNDKALITEIVYGTLKYKETLD--IIIQSYLRNPIKTMDKNIVNILRITIYQIRYLD 91
Query: 166 -MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P +A V+E V ++K + LVNG+LR + N + R +
Sbjct: 92 KIPSFAAVNEAVEMSK-KISIKYSKLVNGVLRNYIRTYKNKKFY------DHRNNLEKFS 144
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQ 284
+YS+P W+++ + G E A K++ N P+ ++R N+ K + + +L
Sbjct: 145 FMYSYPKWLIKMFISQYGIEIAEKILKGLNERPNITVRVNNLK-IDYDEAFEKLGEYGYN 203
Query: 285 VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 344
+ E E I++ G +N+ + L EG VQDESA LV ++ ++D C+
Sbjct: 204 I--EEGYICPEAIQIIKG-KNIEKNPLFIEGNITVQDESAMLVAPSMELDEESIVLDLCS 260
Query: 345 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNST 404
APGGKT +++ ++ + VYA D+++ +L ++ AK + + I T D F
Sbjct: 261 APGGKTTHISEIMNNKSKVYAYDVHQNKLSLIESNAKRLGIKN-IETDVGDAAVFNKKLK 319
Query: 405 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464
K +VL+D PCSGLG++ K+ +++W + +++ + +Q ++++ + +K GG+L+YS
Sbjct: 320 EKAHRVLMDVPCSGLGIIRKKPEIKWTKNEREIKNIIAIQRKIMNNGASYLKEGGILLYS 379
Query: 465 TCSIDPEENEERVEAFLLRHPEFSIDP-ADGLVPSDFVTKHGFFFSDPIKHSLDGAFAAR 523
TC+++ EENEE + FL +H F I+P G V + K GF P +DG F A+
Sbjct: 380 TCTLNKEENEENINWFLKKHKNFKIEPLYYGDVDNIIYHKEGFVSILP-NDKMDGFFIAK 438
Query: 524 L 524
L
Sbjct: 439 L 439
>gi|414157003|ref|ZP_11413304.1| ribosomal RNA small subunit methyltransferase B [Streptococcus sp.
F0442]
gi|410869996|gb|EKS17956.1| ribosomal RNA small subunit methyltransferase B [Streptococcus sp.
F0442]
Length = 432
Score = 184 bits (468), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 127/422 (30%), Positives = 215/422 (50%), Gaps = 27/422 (6%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
D+D VT++V GT+ + L+ + + D + ++ L +L + Y++ LD
Sbjct: 34 FSDKDKSFVTEVVYGTVARKITLEWYLAHVIEDR---TKLDQWLYYLLMMSLYQLAYLDR 90
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P +AVV+E VR+AK + G+ VN ILRKL+ LP E R R +
Sbjct: 91 IPDHAVVNEAVRIAK-RRKEGSEKFVNAILRKLI------REGLPDTETIKRKNKR-YSV 142
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
YS PVW+V+ + G+E A+ + SL ++ + DL + L ++
Sbjct: 143 QYSLPVWLVKALIEEYGEERALAIFE--------SLYQRNKSSIRVIDLSEKEQLAQMLE 194
Query: 286 PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAA 345
+E + ++ + L +EG +QDES+ LV +D Q + ++D CAA
Sbjct: 195 ANESLIATSALVKNQGHFAG---HSLFREGRITIQDESSQLVAPALDLQGDEWVLDACAA 251
Query: 346 PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETA-KLHQVNSVIRTIHADLRTFADNST 404
PGGKT ++AS L+ G V A+D+ +L+++ E A +LH + ++ + F +
Sbjct: 252 PGGKTTHLASYLT-TGKVTALDLYDHKLKLIQENANRLHVADKILTKKLDATKVFEAFGS 310
Query: 405 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464
DK+L+DAPCSG+G++ ++ D+++N+ D L+ +Q +LD+ V+ GG++VYS
Sbjct: 311 DAFDKILVDAPCSGIGLIRRKPDIKYNKESADFASLQAIQLAILDSVCQSVRKGGIIVYS 370
Query: 465 TCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARL 524
TC+I +EN E V+ FL HP F P + + K+ P + DG F +R
Sbjct: 371 TCTIMGKENFEVVDQFLKHHPNFKQVPLEH--ERKDILKNDCILITPELYGSDGFFISRF 428
Query: 525 VR 526
R
Sbjct: 429 KR 430
>gi|313891936|ref|ZP_07825537.1| ribosomal RNA small subunit methyltransferase B [Dialister
microaerophilus UPII 345-E]
gi|313119579|gb|EFR42770.1| ribosomal RNA small subunit methyltransferase B [Dialister
microaerophilus UPII 345-E]
Length = 448
Score = 184 bits (468), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 133/439 (30%), Positives = 225/439 (51%), Gaps = 42/439 (9%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
F++ L RD L+T++V G R YL +++ L + ++ + + + +L +G Y++
Sbjct: 37 FKSHKLLSRDKALITELVYGICRKCNYLQYIVEKLSN--RSINKIHKSVRILLYLGLYQL 94
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKD--NNSLPLPKLEGNDRA 218
+ LD +P A V+E V+L K G VN ILR + K N+ L K E
Sbjct: 95 IYLDKIPESAAVNETVKLTKKITHQGNVRFVNAILRNFLRKKAEINDFSKLSKFE----- 149
Query: 219 QARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQL 278
L+ IY+ P+W++++W K G + +++ N + +R N K +T DL+
Sbjct: 150 ---KLSLIYNQPIWLIQKWNKDYGINKTKEILQAFNLPENLFVRCNELK-ITTNDLIKIF 205
Query: 279 NLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQS 338
+ K++ + + +K G+ N+ + LL++G +Q S+ + +DP+P +
Sbjct: 206 DENKIE--YSGVENFPNIFLIKNGV-NLFKTDLLEKGYIFIQSISSIIPAYALDPKPYEK 262
Query: 339 IVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNE----------TAKLHQVNSV 388
++D CAAPG KT +A + +G + A D+ +++++ E T KL +
Sbjct: 263 VLDMCAAPGSKTTQIAQLMDNKGSIDAWDLYPHKIKLIEENINRLGVKIVTPKLQDATKL 322
Query: 389 IRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELL 448
+ T++ + DKVLLDAPCSGLGVL + +LRW R E +E L Q +LL
Sbjct: 323 LPTLNE-----------QYDKVLLDAPCSGLGVLGHKPELRWRRTEETIESLISTQKDLL 371
Query: 449 DAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFV-TKHGFF 507
AS+ VK GG LVYSTC+++ ENE+ V+ FL + EF + D + +D + +++G
Sbjct: 372 KCASIYVKKGGTLVYSTCTLNINENEKVVDWFLNQKKEFYL---DSIAVNDIINSENGML 428
Query: 508 FSDPIKHSLDGAFAARLVR 526
P DG F A+ R
Sbjct: 429 TLWPDTLKSDGFFIAKFKR 447
>gi|317133047|ref|YP_004092361.1| sun protein [Ethanoligenens harbinense YUAN-3]
gi|315471026|gb|ADU27630.1| sun protein [Ethanoligenens harbinense YUAN-3]
Length = 436
Score = 184 bits (468), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 139/422 (32%), Positives = 212/422 (50%), Gaps = 24/422 (5%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L RD L T +V G + R LD+L L + M+P+L ILR+G Y++ LD
Sbjct: 35 LSRRDAALATALVYGVVARRITLDYL--LETASGRPVQKMQPVLRAILRLGAYQLCYLDK 92
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A V+E V+LAK A VNG+LR L + +LP P E + RA
Sbjct: 93 IPARAAVNEAVQLAKKRHLGHASGFVNGVLRGLD--RKRGALPFPSEEAD---VLRAWEV 147
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
YS P ++ W + G E +++ N+ P ++R N+ + A L +L ++
Sbjct: 148 RYSCPRALIALWRQAYGPERTREILEQLNAVPPLAVRVNTLRTTPDA-LRAELAEAGIEA 206
Query: 286 PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAA 345
+ S+ D + + + A EG VQD ++ + A +DPQPG+++ D CAA
Sbjct: 207 APDASVP-DALLLSHSADLRTLPA--FTEGCFFVQDIASQMACAALDPQPGETVYDLCAA 263
Query: 346 PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTV 405
PGGK+ +A + GQG+V A D++ R+R++ E A ++ +++ D
Sbjct: 264 PGGKSFTLALHMRGQGMVRAFDLHAHRVRLIEEGAGWLGLSGIVQASVRD--ATGGEPLP 321
Query: 406 KCDKVLLDAPCSGLGVLSKRADLRW-NRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464
D+VL D PCSGLGV+ ++ ++R+ N ++ D L LQ +L + +KPGGVLVYS
Sbjct: 322 PADRVLCDVPCSGLGVIRRKPEIRYKNPKIFD--GLPDLQYHILCDGAANLKPGGVLVYS 379
Query: 465 TCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARL 524
TC+++P ENE V FL H F P PS F P DG F A+L
Sbjct: 380 TCALNPAENEAVVRRFLDGHAGFEPVP----FPSAPAGNATLF---PQADGTDGFFIAKL 432
Query: 525 VR 526
+R
Sbjct: 433 LR 434
>gi|312622710|ref|YP_004024323.1| sun protein [Caldicellulosiruptor kronotskyensis 2002]
gi|312203177|gb|ADQ46504.1| sun protein [Caldicellulosiruptor kronotskyensis 2002]
Length = 431
Score = 184 bits (468), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 125/411 (30%), Positives = 214/411 (52%), Gaps = 19/411 (4%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
F K +++D L ++V G +R++ +D+ I + + +L ILR+ YE+
Sbjct: 29 FHQKLKNEKDRALFVELVHGVLRYKNLIDYYINFVAKK----GVKDKRILNILRVATYEL 84
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
+ L+ +P YA V+E +A + P VN ILR ++ K+ L +++ D
Sbjct: 85 LFLEKIPEYATVNEACEIAS-KINPHLKAFVNAILRNIIRNKNQIEESLERIK--DVNYK 141
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
L+ S+P +++ + G E+ IK++ + N+ P S++ N++K T + + Q L
Sbjct: 142 SYLSIKLSYPRFLIDYLEESYGLEKTIKILEFLNTKPPQSIKINTKK--TNVNTLTQ-EL 198
Query: 281 LKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAV--VDPQPGQS 338
K +E++ +E + + G N+ + L K+G QD ++ LVV D + +
Sbjct: 199 EKNGFKYEINSRNNEIVLILKG--NIKETELYKKGYFYFQDLASSLVVKSNQEDFERAKK 256
Query: 339 IVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT 398
++D CAAPGGKT A + G V A DIN+ +L IL E +++I D
Sbjct: 257 VLDLCAAPGGKTFNCAEVIDG--FVVACDINEHKLDILRENILRLGFDNII-VAKNDAEV 313
Query: 399 FADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPG 458
F + K D V+ D PC+G G + K+ D++WN+ +D+E L LQ +LD ++ +K G
Sbjct: 314 FNPDFAEKFDIVIADLPCTGFGAIRKKPDIKWNKSYQDIENLHELQVRILDNSAGYLKRG 373
Query: 459 GVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFS 509
G+L YSTC++ +ENEE V FL +H +FS+ + P +F GFF +
Sbjct: 374 GILFYSTCTLGKKENEETVIEFLDKHKDFSLVSQTTIFPDEFEC-DGFFIA 423
>gi|251810647|ref|ZP_04825120.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus epidermidis
BCM-HMP0060]
gi|282876351|ref|ZP_06285218.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis SK135]
gi|417913398|ref|ZP_12557065.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis VCU109]
gi|418624473|ref|ZP_13187148.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis VCU125]
gi|420169761|ref|ZP_14676339.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIHLM070]
gi|420172783|ref|ZP_14679281.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIHLM067]
gi|420194045|ref|ZP_14699874.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIHLM021]
gi|420209504|ref|ZP_14714941.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIHLM003]
gi|421607281|ref|ZP_16048527.1| 16S rRNA methyltransferase B [Staphylococcus epidermidis AU12-03]
gi|251805807|gb|EES58464.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus epidermidis
BCM-HMP0060]
gi|281295376|gb|EFA87903.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis SK135]
gi|341655680|gb|EGS79404.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis VCU109]
gi|374827702|gb|EHR91563.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis VCU125]
gi|394241460|gb|EJD86874.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIHLM067]
gi|394243061|gb|EJD88435.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIHLM070]
gi|394266743|gb|EJE11368.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIHLM021]
gi|394278951|gb|EJE23263.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIHLM003]
gi|406657073|gb|EKC83466.1| 16S rRNA methyltransferase B [Staphylococcus epidermidis AU12-03]
Length = 435
Score = 184 bits (468), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 128/420 (30%), Positives = 222/420 (52%), Gaps = 38/420 (9%)
Query: 104 TKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTF--SSMEPLLLQILRIGFYEI 161
T +++ D L T++V GTI+ + LD+L+ K F + ++ + Q+L + Y+
Sbjct: 33 TNNINTVDKNLFTELVYGTIKRKYSLDYLL-------KPFIKTKIKSWVRQLLWMSLYQY 85
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
+ LD +P +A++ E V +AK GN+VNG+LR ++ + LP E D +
Sbjct: 86 LYLDKIPNHAIIHEAVDIAKKRGGYHTGNIVNGVLRTVMRTE------LPSFEDIDDTKK 139
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
R +A YS P W+V W + G E+ + + ++RAN ++R + ++
Sbjct: 140 R-IAIQYSLPKWIVDHWVTHFGVEKTENIARSFLEPVTTTVRAN----ISRDSIDSIISK 194
Query: 281 LKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIV 340
L+ + H + F +G+ V+ + KEG ++QD+S+ +V V++ ++
Sbjct: 195 LEQEGYHVKKDDMLPFCLHISGMP-VVNSNAFKEGYISIQDKSSMMVAYVMNLGRDDKVL 253
Query: 341 DCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 400
D C+APGGK +MA LS +G V A DI++ ++ ++ + K ++N+ I+ D
Sbjct: 254 DACSAPGGKACHMAEILSPEGHVDATDIHEHKINLIKQNIKKLKLNN-IKAFQHDATEVY 312
Query: 401 DNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGV 460
D DK+L+DAPCSGLGVL + ++++++ ++ L LQ ++L+ +KPGG
Sbjct: 313 DKM---YDKILVDAPCSGLGVLRHKPEIKYSQSQNSIKSLVELQLQILENVKDNIKPGGT 369
Query: 461 LVYSTCSIDPEENEERVEAFLLRHPEFSID----PADG-------LVPSDFVTKHGFFFS 509
+VYSTC+I+ ENE + FL RH +F + PA G ++P DF GFF S
Sbjct: 370 IVYSTCTIEQMENENVIYTFLKRHKDFEFEPFQNPATGEQVKTLQILPQDF-NSDGFFIS 428
>gi|325294320|ref|YP_004280834.1| sun protein [Desulfurobacterium thermolithotrophum DSM 11699]
gi|325064768|gb|ADY72775.1| sun protein [Desulfurobacterium thermolithotrophum DSM 11699]
Length = 442
Score = 184 bits (467), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 135/426 (31%), Positives = 220/426 (51%), Gaps = 21/426 (4%)
Query: 104 TKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVK 163
T L +D + +IV GT+R+ R LD I K + + LR+ Y+I
Sbjct: 31 TSRLHPQDRAFIREIVSGTVRFLRLLDFSIEKATG--KNLKRQKNTVRNSLRVIAYQIFF 88
Query: 164 LDMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARAL 223
++PPYA ++E V K L A VN I +K++ + +D + L
Sbjct: 89 TNVPPYAALNETVEAVKKILGKKAAGFVNAISKKIIGFDYKKEIE----RISDYFER--L 142
Query: 224 ATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLL-K 282
+ +YS WMV+RW+ + G+EE KL+ N +R N+ K +++ +L LNLL K
Sbjct: 143 SILYSFETWMVKRWSNFYGKEEIEKLLKGLNRVAPLFIRVNTIK-ISQQEL---LNLLEK 198
Query: 283 LQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 342
++ E + IR+K G + KEG +QD ++ L ++DP+ G+ I+D
Sbjct: 199 TKIDAEPHPFIPYMIRIK-GRVPIESIPGYKEGFFYIQDPASFLSAYLLDPKQGEIILDV 257
Query: 343 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAK---LHQVNSVIRTIHADLRTF 399
AAPGGKT ++S + + A+DINK R+++L K + V V+ I D + F
Sbjct: 258 GAAPGGKTTALSSLTIDKARIIAVDINKERMKLLKNNLKRLGISNVELVLTDIQKD-KNF 316
Query: 400 ADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGG 459
+ DK+L+DAPCS GV+ + + +WN+ L+ ++ + +Q LL + L+KPGG
Sbjct: 317 IEKHENSFDKILIDAPCSATGVIRRHPEGKWNKSLKLIKYNQTIQRNLLSSCYKLLKPGG 376
Query: 460 VLVYSTCSIDPEENEERVE-AFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDG 518
VL+YS CS++ EE E+ ++ A + E S+ L+ S F KH F P K+++DG
Sbjct: 377 VLLYSVCSLEKEEGEDILKFAQEIGFKESSLYNLPELLKS-FAKKH-FLRVFPHKNNMDG 434
Query: 519 AFAARL 524
F ++
Sbjct: 435 FFYSKF 440
>gi|319646043|ref|ZP_08000273.1| YloM protein [Bacillus sp. BT1B_CT2]
gi|317391793|gb|EFV72590.1| YloM protein [Bacillus sp. BT1B_CT2]
Length = 444
Score = 184 bits (467), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 125/394 (31%), Positives = 208/394 (52%), Gaps = 20/394 (5%)
Query: 101 GFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYE 160
+ DL D+D L+T++V GT++ + LD+++ K ++ ++ +LR+ Y+
Sbjct: 26 AMKANDLSDKDRGLLTELVYGTLQNKLALDYMLKPFI---KKPEKVKDWVIHLLRMSLYQ 82
Query: 161 IVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQ 219
+ L+ +P A + E V +AK G + VNG+LR + +P
Sbjct: 83 MEYLEKIPDRAALFEAVEIAKRRGHKGISSFVNGVLRSV------QREGVPSFADIADPI 136
Query: 220 ARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLN 279
R LA SHP W+VR WT G E A ++ + P ++R N K R L+ +LN
Sbjct: 137 ER-LAVETSHPEWLVREWTDAYGFEAAEQICRIHMIPPKQTIRVNRLKN-DRDTLLSRLN 194
Query: 280 LLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSI 339
++ E L D VK + KEG +QDES+ LV + P+ G+++
Sbjct: 195 EAGIEA-EEGDLSKDA---VKLLKGTIASTPFFKEGEVTIQDESSMLVARALGPERGETV 250
Query: 340 VDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETA-KLHQVNSVIRTIHADLRT 398
+D CAAPGGK+ ++ L G V ++D+++ +++++ E A ++ N R + D R
Sbjct: 251 LDACAAPGGKSTHIGELLEDTGKVVSLDLHQHKVKLIKEAAGRIGLSNIEARAL--DARK 308
Query: 399 FAD-NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKP 457
+ + D++L+DAPCSG GV+ ++ DL++++ ED L +Q +L+ + L+K
Sbjct: 309 AGEVFEPEQFDRILVDAPCSGFGVIRRKPDLKYSKTPEDSARLAGIQLAILNEIAPLLKT 368
Query: 458 GGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDP 491
GG LVYSTC++DP ENE+ + AFL H EF DP
Sbjct: 369 GGTLVYSTCTMDPTENEQVMHAFLEEHDEFEADP 402
>gi|163119428|ref|YP_078968.2| rRNA SAM-dependent methyltransferase RmsB [Bacillus licheniformis
DSM 13 = ATCC 14580]
gi|404489065|ref|YP_006713171.1| 16S rRNA methyltransferase B [Bacillus licheniformis DSM 13 = ATCC
14580]
gi|423682119|ref|ZP_17656958.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus licheniformis
WX-02]
gi|52348056|gb|AAU40690.1| rRNA large subunit methyltransferase B [Bacillus licheniformis DSM
13 = ATCC 14580]
gi|145902935|gb|AAU23330.2| rRNA SAM-dependent methyltransferase RmsB [Bacillus licheniformis
DSM 13 = ATCC 14580]
gi|383438893|gb|EID46668.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus licheniformis
WX-02]
Length = 448
Score = 184 bits (467), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 125/394 (31%), Positives = 208/394 (52%), Gaps = 20/394 (5%)
Query: 101 GFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYE 160
+ DL D+D L+T++V GT++ + LD+++ K ++ ++ +LR+ Y+
Sbjct: 30 AMKANDLSDKDRGLLTELVYGTLQNKLALDYMLKPFI---KKPEKVKDWVIHLLRMSLYQ 86
Query: 161 IVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQ 219
+ L+ +P A + E V +AK G + VNG+LR + +P
Sbjct: 87 MEYLEKIPDRAALFEAVEIAKRRGHKGISSFVNGVLRSV------QREGVPSFADIADPI 140
Query: 220 ARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLN 279
R LA SHP W+VR WT G E A ++ + P ++R N K R L+ +LN
Sbjct: 141 ER-LAVETSHPEWLVREWTDAYGFEAAEQICRIHMIPPKQTIRVNRLKN-DRDTLLSRLN 198
Query: 280 LLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSI 339
++ E L D VK + KEG +QDES+ LV + P+ G+++
Sbjct: 199 EAGIEA-EEGDLSKDA---VKLLKGTIASTPFFKEGEVTIQDESSMLVARALGPERGETV 254
Query: 340 VDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETA-KLHQVNSVIRTIHADLRT 398
+D CAAPGGK+ ++ L G V ++D+++ +++++ E A ++ N R + D R
Sbjct: 255 LDACAAPGGKSTHIGELLEDTGKVVSLDLHQHKVKLIKEAAGRIGLSNIEARAL--DARK 312
Query: 399 FAD-NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKP 457
+ + D++L+DAPCSG GV+ ++ DL++++ ED L +Q +L+ + L+K
Sbjct: 313 AGEVFEPEQFDRILVDAPCSGFGVIRRKPDLKYSKTPEDSARLAGIQLAILNEIAPLLKT 372
Query: 458 GGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDP 491
GG LVYSTC++DP ENE+ + AFL H EF DP
Sbjct: 373 GGTLVYSTCTMDPTENEQVMHAFLEEHDEFEADP 406
>gi|168704061|ref|ZP_02736338.1| Fmu, rRNA SAM-dependent methyltransferase:Nop2p [Gemmata
obscuriglobus UQM 2246]
Length = 465
Score = 184 bits (467), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 133/414 (32%), Positives = 193/414 (46%), Gaps = 54/414 (13%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL- 164
+L +D R VT +V G IR LD L+ H +++ + +LR+G +++ L
Sbjct: 35 NLSPQDRRFVTQLVFGVIRRGGTLDALLKPFIHLPT--HAVQDRVWDLLRLGAFQLTFLT 92
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNN----------------SLP 208
+P +A V E V LA+ P A VNG+LR++ L + S P
Sbjct: 93 HVPKHAAVHETVELAEHVGAPKAKGFVNGVLRRIAELTTDEFTDAPGAAAVPFALVESAP 152
Query: 209 LPKLEGNDRAQARAL----------------ATIYSHPVWMVRRWTKYLGQEEAIKLMVW 252
P EG R R L A +S P W+ RW K G +E ++L W
Sbjct: 153 TPS-EGGGRGSYRRLTKPVLPDPATDPAPYFAAAFSFPQWLANRWLKRYGVDECVRLGFW 211
Query: 253 NNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV-----PHELSLHLDEFIRVKTGLQNVI 307
N+ P +R N + +R +QL ++V P L IR G
Sbjct: 212 FNAAPPLWVRVNKLR-ASRESYRIQLAAQTIEVEPGEHPQALRFSQHHSIRDLPGY---- 266
Query: 308 QAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAID 367
EG AVQD S+ LV + + QPG I+D CAAPGGKT ++ + G+G + A D
Sbjct: 267 -----AEGDFAVQDHSSMLVASALGVQPGMRILDACAAPGGKTTHLMELMDGRGHITACD 321
Query: 368 INKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRAD 427
I+ RL + A+ ++ + + D F D L+D PCS GV+ +R +
Sbjct: 322 IDPKRLETVAALAQRMRLTGIETVLLKDNEEFPAGP---FDAALVDVPCSNTGVIGRRPE 378
Query: 428 LRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFL 481
+RW + + E L LQ LL A+ VKPGG +VYSTCSI+P+ENE V+A L
Sbjct: 379 VRWRLKPNEFEYLIRLQTRLLILAADRVKPGGAVVYSTCSIEPDENEGVVKAVL 432
>gi|383453320|ref|YP_005367309.1| ribosomal RNA small subunit methyltransferase B [Corallococcus
coralloides DSM 2259]
gi|380734274|gb|AFE10276.1| ribosomal RNA small subunit methyltransferase B [Corallococcus
coralloides DSM 2259]
Length = 438
Score = 184 bits (467), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 138/441 (31%), Positives = 217/441 (49%), Gaps = 22/441 (4%)
Query: 90 DNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPL 149
D + V T+ T D RD LVT++ G R + LD+ I ++ ++E
Sbjct: 18 DAYLNVVLDTVLSETPPKDPRDAALVTELTYGATRRQLALDYAITRFA--DRKLDALEDK 75
Query: 150 LLQILRIGFYEIVKLDMPPYAVVDENVR-LAKVALRPGAGNLVNGILRKLVLLKDNNSLP 208
+L LR+G Y++ +P A V E V+ L V L AG VN ILRKL + LP
Sbjct: 76 VLAALRVGAYQLFHTRVPARAAVAETVQALKDVGLARAAG-FVNAILRKL------SELP 128
Query: 209 LPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKG 268
P L + + L+ SHP W+V RW + G+E A ++V NN P+ +RANS K
Sbjct: 129 SPPLP-SQKDPVEYLSVRESHPRWLVERWIRQFGRERAEAMLVANNLPPAVVIRANSAK- 186
Query: 269 VTRADLVMQLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVV 328
VTR L+ QL + ++ + + + +++V EGL VQDE+A LV
Sbjct: 187 VTRDALLAQLKDVGVEARATEASPVGIVLPPVGRVEDVYG---YAEGLWQVQDEAAQLVG 243
Query: 329 AVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSV 388
++D CAAPGGK + A V A+D++ +LR + A ++
Sbjct: 244 VYGAIPESARVLDACAAPGGKACHQAETHD----VVAVDLHANKLRKIEAEAHRLGLSGR 299
Query: 389 IRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELL 448
++ D + +++DAPCSGLG L + +LR+ R+ ED+ L LQ +L
Sbjct: 300 LKAYAHDASEPFPEGWGEFHALVVDAPCSGLGTLRRHPELRYRRKEEDVARLATLQRRIL 359
Query: 449 DAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPS-DFVTKHGFF 507
+ V GG+LVY+ C+ +P+E +++V+ FL HPE++ +P ++P +
Sbjct: 360 ENCQEAVPAGGLLVYAVCTPEPQEGQDQVDMFLRSHPEWTAEPP--VLPGLKLPLAQAWL 417
Query: 508 FSDPIKHSLDGAFAARLVRAF 528
+ P DG FAARL + +
Sbjct: 418 RTLPGPEGYDGFFAARLRKLY 438
>gi|420211892|ref|ZP_14717248.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIHLM001]
gi|394280402|gb|EJE24683.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIHLM001]
Length = 435
Score = 184 bits (467), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 127/420 (30%), Positives = 221/420 (52%), Gaps = 38/420 (9%)
Query: 104 TKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTF--SSMEPLLLQILRIGFYEI 161
T +++ D L T++V GTI+ + LD+L+ K F + ++ + Q+L + Y+
Sbjct: 33 TNNINTVDKNLFTELVYGTIKRKYTLDYLL-------KPFIKTKIKSWVRQLLWMSLYQY 85
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
+ LD +P +A++ E V +AK GN+VNG+LR ++ + LP E D +
Sbjct: 86 LYLDKIPNHAIIHEAVDIAKKRGGYHTGNIVNGVLRTVMRTE------LPSFEDIDDTKK 139
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
R +A YS P W+V W + G E+ + + ++RAN ++R + ++
Sbjct: 140 R-IAIQYSLPKWIVNHWVTHFGVEKTENIARSFLEPVATTVRAN----ISRDSIDSIISK 194
Query: 281 LKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIV 340
L+ + H + F +G+ V+ + KEG ++QD+S+ +V V++ ++
Sbjct: 195 LEQEGYHVKKDDMLPFCLHISGMP-VVNSNAFKEGYISIQDKSSMMVAYVMNLGRDDKVL 253
Query: 341 DCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 400
D C+APGGK +MA LS +G V A DI++ ++ ++ + K ++N+ I+ D
Sbjct: 254 DACSAPGGKACHMAEILSPEGHVDATDIHEHKINLIKQNIKKLKLNN-IKAFQHDATEVY 312
Query: 401 DNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGV 460
D DK+L+DAPCSG GVL + ++++++ ++ L LQ ++L+ +KPGG
Sbjct: 313 DKM---YDKILVDAPCSGFGVLRHKPEIKYSQSQNSIKSLVELQLQILENVKDNIKPGGT 369
Query: 461 LVYSTCSIDPEENEERVEAFLLRHPEFSID----PADG-------LVPSDFVTKHGFFFS 509
+VYSTC+I+ ENE + FL RH +F + PA G ++P DF GFF S
Sbjct: 370 IVYSTCTIEQMENENVIYTFLKRHKDFEFEPFQNPATGEQVKTLQILPQDF-NSDGFFIS 428
>gi|256843396|ref|ZP_05548884.1| ribosomal small subunit methyltransferase B [Lactobacillus
crispatus 125-2-CHN]
gi|256614816|gb|EEU20017.1| ribosomal small subunit methyltransferase B [Lactobacillus
crispatus 125-2-CHN]
Length = 453
Score = 184 bits (467), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 150/474 (31%), Positives = 241/474 (50%), Gaps = 54/474 (11%)
Query: 61 RAVSAVRLMRIQFGGAFADL-LNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIV 119
RAVS L+++ G+++++ LN K S +L D L T+IV
Sbjct: 20 RAVSLETLIKVLDQGSYSNISLNNSLKHS-----------------NLSIADQNLATNIV 62
Query: 120 GGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRL 178
GTI++R +L++ + L + T ++PLLL + Y+++ LD +P AV+DE +L
Sbjct: 63 YGTIQYRLFLEYQLKGLVRTKLTEKYIKPLLL----MSLYQLIFLDKVPDRAVLDEANKL 118
Query: 179 AK-VALRPGAG-NLVNGILRKL-----VLLKDNNSLPLPKLEGNDRAQARALATIYSHPV 231
AK R AG L NGILR +L +NN + + L+ S P
Sbjct: 119 AKQYGKRHSAGFRLANGILRSFTRRGVILPAENNPV-------------KYLSVKESVPE 165
Query: 232 WMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSL 291
W+V+ G ++A ++ N S+R + K + + QL Q P L
Sbjct: 166 WLVQYLIDNWGLDKAKSVLNSINEPAKNSVRIS--KLADKEQVFAQLERDNYQ-PQWSKL 222
Query: 292 HLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTL 351
D+ I G+ ++ L +EG +QDE+A LVV D + + ++D C+APGGKT+
Sbjct: 223 SSDDVILSHGGIS---ESDLFEEGKLTIQDEAASLVVEAFDFEQDEHVLDACSAPGGKTV 279
Query: 352 YMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-NSTVKCDKV 410
+A + G V A+DI+ +LR++ + A+ V + ++T D R + + + K+
Sbjct: 280 QIAESIVN-GDVTALDIHDKKLRLVRDNAQRMHVANKVKTKACDARKATEIFAAGEFTKI 338
Query: 411 LLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDP 470
L+DAPCSGLG+L ++ ++R+ +R +D++ L+ +Q +L A S L+K G LVYSTCSI
Sbjct: 339 LVDAPCSGLGLLRRKPEIRYTKRQQDLQNLQKIQLAILTAVSSLLKKNGELVYSTCSISM 398
Query: 471 EENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARL 524
EENEE V+ FL HP+F + P + +K G P DG F A+
Sbjct: 399 EENEEVVKKFLQAHPDFELVP---FKLTKLESKTGMLKIMPDLDGNDGFFIAKF 449
>gi|325662242|ref|ZP_08150857.1| ribosomal RNA small subunit methyltransferase B [Lachnospiraceae
bacterium 4_1_37FAA]
gi|325471494|gb|EGC74715.1| ribosomal RNA small subunit methyltransferase B [Lachnospiraceae
bacterium 4_1_37FAA]
Length = 452
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 136/424 (32%), Positives = 211/424 (49%), Gaps = 17/424 (4%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
LD ++ +T +V GT+ +D++I + + + M+P++ ILR Y++ +D
Sbjct: 39 LDKKERAFITRVVEGTLERMIEIDYIINQFSNVK--VNKMKPVIRTILRSAVYQLKYMDG 96
Query: 166 MPPYAVVDENVRLA-KVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P AV +E V+LA K R G VNG+LR + ++ + + P+ E N L+
Sbjct: 97 VPDSAVCNEAVKLAEKKGFRSLKG-FVNGVLRTIA--RNMDQIRYPEKEKN---PVSWLS 150
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQ 284
YS P WMV+ W G E K++ + +R N RK +++ + L K
Sbjct: 151 IHYSIPEWMVKLWLSEYGAETVEKMLKGFLEEHPTVIRCNLRK---QSEKELTERLRKEG 207
Query: 285 VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 344
V E +L + + +G ++ ++G VQD S+ LV + PQ G ++D CA
Sbjct: 208 VKVEAHPYLS-YAKKISGYDHLGGLESFRDGAFQVQDISSMLVAEIAAPQRGDQVIDVCA 266
Query: 345 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNST 404
APGGK++++A L G G+V A D+ + ++ ++ E + IR D F +S
Sbjct: 267 APGGKSMHIADLLDGSGMVAARDLTEYKVGLIEENICRTGFQN-IRAEQKDATVFDKDSE 325
Query: 405 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464
D V+ D PCSGLGVL+K+ DL++ E E L LQ E+L+ VK GG LVYS
Sbjct: 326 RIADIVIADLPCSGLGVLAKKTDLKYKMTKEGTESLAKLQREILEVVRNYVKEGGALVYS 385
Query: 465 TCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFV--TKHGFFFSDPIKHSLDGAFAA 522
TC+I+P EN E V FL PEF + + + K G P H DG F A
Sbjct: 386 TCTINPAENLENVRWFLDNSPEFEAEDITSFLCGELQKDVKEGCLQLLPGVHDSDGFFIA 445
Query: 523 RLVR 526
+ R
Sbjct: 446 KFRR 449
>gi|229174531|ref|ZP_04302063.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
MM3]
gi|228609091|gb|EEK66381.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
MM3]
Length = 402
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 125/380 (32%), Positives = 206/380 (54%), Gaps = 22/380 (5%)
Query: 114 LVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVV 172
++T+IV GTI+ R LD+ + +E + +LR+ Y+++ LD +P A +
Sbjct: 1 MLTEIVYGTIQRRDTLDYYLQPFLK-----KKVEAWVRVLLRLSLYQMIYLDRVPERAAI 55
Query: 173 DENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVW 232
E V +AK G +VNG+LR + +P E D + A+AT SHP+W
Sbjct: 56 HEAVEIAKRRGHKGIAGMVNGVLRSI----QREGVPSVD-EIKDPIERLAIAT--SHPMW 108
Query: 233 MVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPH-ELSL 291
+V+ W G E A K+ N P + R N K +T + + L ++ +LS
Sbjct: 109 LVQDWASEYGLETAEKMCEVNMLPPVPTARVNVDK-ITVEEAIELLAGEGIEAKRGDLS- 166
Query: 292 HLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTL 351
++ I+++ G NV K+G ++QDES+ LV ++P G ++D CAAPGGKT
Sbjct: 167 --EDAIQIERG--NVAHTDAFKKGFLSIQDESSMLVARALEPNEGDEVLDSCAAPGGKTT 222
Query: 352 YMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVKCDKV 410
++A L G G V ++D++ ++R++ + A+ + +V T D R ++ + DK+
Sbjct: 223 HIAERLKGTGQVMSLDLHAHKVRLIKQQAERLGLENV-ETKALDARKVQEHFANETFDKI 281
Query: 411 LLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDP 470
L+DAPCSG GV+ ++ D++ + D E L +Q +L+ + L+K GG LVYSTC+I+
Sbjct: 282 LVDAPCSGFGVIRRKPDIKLGKNKGDSERLSTIQLAILEKIAPLLKQGGRLVYSTCTIEK 341
Query: 471 EENEERVEAFLLRHPEFSID 490
ENE+ ++ FL HPEF D
Sbjct: 342 IENEQVIKQFLQEHPEFEWD 361
>gi|108760453|ref|YP_629658.1| ribosomal RNA small subunit methyltransferase B [Myxococcus xanthus
DK 1622]
gi|108464333|gb|ABF89518.1| ribosomal RNA small subunit methyltransferase B [Myxococcus xanthus
DK 1622]
Length = 438
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 141/428 (32%), Positives = 214/428 (50%), Gaps = 32/428 (7%)
Query: 108 DDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMP 167
D RD LVT++ G R + LD+ I ++ ++E +L LRIG Y+I +P
Sbjct: 36 DPRDAALVTELTYGATRRQLALDYAITRFA--DRKLDALEDKVLAALRIGAYQIFHTRVP 93
Query: 168 PYAVVDENVR-LAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATI 226
A V E V+ L +V L AG N ILRKL L P + A L+
Sbjct: 94 ARAAVAETVQALKEVGLTRAAG-FTNAILRKLAALPAPPLPPASDV-------ALHLSVR 145
Query: 227 YSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLL----K 282
SHP W+V RW + G+E A ++V +N P+ +RAN+ K VTR L+ QL + K
Sbjct: 146 ESHPQWLVERWLRQFGRERAEAMLVADNQAPAVVVRANTAK-VTRDALLAQLQEMGVDAK 204
Query: 283 LQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLV-VAVVDPQPGQSIVD 341
+ + L RV ++V EGL VQDE+A LV V P+ + ++D
Sbjct: 205 ATTVSPVGITLPSVGRV----EDVYG---YAEGLWQVQDEAAQLVGVYGAIPETAR-VLD 256
Query: 342 CCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD 401
CAAPGGK+ + A V A+D++ +LR + A+ + ++ D
Sbjct: 257 ACAAPGGKSCHQAQSHD----VVAVDLHAHKLRKIEAEARRLGLQPRLKAYAHDAAEPFP 312
Query: 402 NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVL 461
+ L+DAPCSGLG L + +LR+ R+ ED+ L LQ +L+ V PGG+L
Sbjct: 313 EEWGEFHAFLVDAPCSGLGTLRRHPELRYRRKEEDISRLATLQRRILENCQDAVPPGGLL 372
Query: 462 VYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPS-DFVTKHGFFFSDPIKHSLDGAF 520
VY+ C+++P+E +++VE FL HPE++ +P ++P + + P DG F
Sbjct: 373 VYAVCTMEPQEGQDQVEMFLRSHPEWTAEPP--VLPGLKLPMSQAYLRTLPGPEGFDGFF 430
Query: 521 AARLVRAF 528
AARL + +
Sbjct: 431 AARLRKLY 438
>gi|304316972|ref|YP_003852117.1| sun protein [Thermoanaerobacterium thermosaccharolyticum DSM 571]
gi|302778474|gb|ADL69033.1| sun protein [Thermoanaerobacterium thermosaccharolyticum DSM 571]
Length = 447
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 124/425 (29%), Positives = 220/425 (51%), Gaps = 18/425 (4%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
++D + + +IV GTI + LD +I C K ++ +L IL +G ++++ +D
Sbjct: 34 IEDVEKSFIKEIVFGTIERKYTLDRIIDY-CS-TKDIKKIDNKVLIILEMGLFQLMYMDK 91
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P YA ++E+V L K + A VN +LR + NS+ + L+ N+ L+
Sbjct: 92 VPDYAAINESVNLTKEHVGKYASKFVNAVLRSYL----RNSMKIKFLQPNENL-IEYLSF 146
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
YS P W+V+R ++ ++ N P S+R N+ K + + +LN L+
Sbjct: 147 KYSFPEWIVKRLLNNYDRDATESILESLNGKPEISIRLNTLK-IDGKNFEKKLNDRGLKY 205
Query: 286 PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAA 345
+ + +I L+N+ + K+GL VQDE A ++ V+ P+PG ++D C+A
Sbjct: 206 KKGMYNNDAYYI----DLKNITNDEIYKDGLIQVQDEGAMIISKVLSPKPGDMVIDVCSA 261
Query: 346 PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTV 405
PGGKT +++ ++ +G + A D+ + ++ ++ + V++V + + ++
Sbjct: 262 PGGKTTHLSQLMNNKGKIVAFDVYEHKIDLIKRNCRRLGVDNVDAFVFDSTKVNSE-YID 320
Query: 406 KCDKVLLDAPCSGLGVLSKRADLRW-NRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464
K DKVL D PCSG+G++ K+ D++ N +D +EL +Q +L ++S VK GG ++YS
Sbjct: 321 KADKVLADVPCSGIGIIRKKPDIKLKNYTKKDFDELNNIQYRILSSSSKYVKKGGYILYS 380
Query: 465 TCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSD---FVTKHGFFFSDPIKHSLDGAFA 521
TC+I EEN V+ FL + EF I +P + FV G P ++ DG F
Sbjct: 381 TCTIGKEENINIVDKFLNENKEFKIADIRPFLPQNLVHFVDDKGCIQLLPNLNNTDGFFI 440
Query: 522 ARLVR 526
+L R
Sbjct: 441 CKLQR 445
>gi|383817278|ref|ZP_09972655.1| 16S rRNA methyltransferase B [Serratia sp. M24T3]
gi|383293898|gb|EIC82255.1| 16S rRNA methyltransferase B [Serratia sp. M24T3]
Length = 429
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 134/417 (32%), Positives = 215/417 (51%), Gaps = 30/417 (7%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
K + D+D L+ ++ GT+R L+ CL K + + L +L +G Y+++
Sbjct: 34 KSIADKDKALLQELCFGTLRVLPELE--WCLQQLMAKPLTGKQRTLHYLLMVGLYQMLHT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+PP+A++ E V A RP L+NG+LR+ + L +++ ND
Sbjct: 92 RIPPHAILAETVEGAVALKRPQLKGLINGVLRQF---QRQQVDLLQRMQNND-------- 140
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQ 284
+ Y HP W+++R K E+ +++ NN P LR N + A L + +
Sbjct: 141 SRYLHPSWLLKR-IKNAYPEQWQQILDANNQRPPMWLRVNRQHHTRDAYLALLIEAGIEA 199
Query: 285 VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 344
PH + +R++T V +G VQD SA V ++DPQ G++I+D C
Sbjct: 200 HPHP---DYADALRLETPC-GVTSLPGFDQGWVTVQDASAQGSVDLLDPQDGEAILDLCC 255
Query: 345 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNST 404
APGGKT ++ + + V A+D++K RL+ ++E + +++ ++ D R +T
Sbjct: 256 APGGKTTHILEA-APKAHVLAVDVDKQRLQRVHENLQRLGLHAEVK--QGDGREPHVWAT 312
Query: 405 VKC-DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463
K DK+LLDAPCS GV+ + D++W RR D+ EL LQ E+L+A +KP G LVY
Sbjct: 313 GKVFDKILLDAPCSATGVIRRHPDIKWLRRDSDITELASLQAEILEAIWPTLKPQGTLVY 372
Query: 464 STCSIDPEENEERVEAFLLRHPEFSI-------DPADGLVPSDFVTKHGFFFSDPIK 513
+TCSI PEEN E++ AFL RHPE + P +P D + GF+++ IK
Sbjct: 373 ATCSILPEENSEQITAFLARHPEARLVETGDIERPGKQNLP-DANSGDGFYYAKLIK 428
>gi|417919600|ref|ZP_12563129.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
australis ATCC 700641]
gi|342832367|gb|EGU66663.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
australis ATCC 700641]
Length = 433
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 147/472 (31%), Positives = 231/472 (48%), Gaps = 51/472 (10%)
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVG 120
R V+ L I GAF+++ KK G L D D LVT+IV
Sbjct: 5 REVALSTLGEIFQDGAFSNISLKKSLGKAT----------------LSDVDKSLVTEIVY 48
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLA 179
GT+ + L+ + D ++P + +L + Y+ V L+ +P +AVV E V LA
Sbjct: 49 GTVSRKLTLEWYLSHFVADR---DQVDPWIYHLLLMSLYQFVYLEKIPLHAVVHEAVELA 105
Query: 180 KVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTK 239
K + G+ VN +LRK+ L++ LP ++ R R L+ YS PVW+V++
Sbjct: 106 K-QRKKGSEKYVNALLRKM--LREE----LPSIDQIKRINKR-LSIRYSLPVWLVKKLMD 157
Query: 240 YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFIRV 299
G+E AI + SL ++ V DL + ++ + L + +
Sbjct: 158 EYGEERAIAIFE--------SLYVRNKASVRVVDLDKKEDIKE-------QLQASDSLLA 202
Query: 300 KTGL--QNVIQAG--LLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMAS 355
T L +N AG K+G +QDE++ LV ++ QP ++D CAAPGGKT ++AS
Sbjct: 203 STALVKENGYFAGSDYFKQGKLTIQDETSQLVAPALEVQPSDQVLDACAAPGGKTTHLAS 262
Query: 356 CLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADL-RTFADNSTVKCDKVLLDA 414
L G V A+D+ +L+++ E A+ V I+T D + F DK+L+DA
Sbjct: 263 YLV-DGQVTALDLYDHKLQLIQENAERLGVADKIQTKKLDASKVFEAFGADAFDKILVDA 321
Query: 415 PCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENE 474
PCSG+G++ ++ D+++N+ D L+ +Q E+LD V+ G++VYSTC+I EEN
Sbjct: 322 PCSGIGLIRRKPDIKYNKDNADFASLQAIQLEILDGVCQSVRKDGIIVYSTCTIIGEENF 381
Query: 475 ERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARLVR 526
+ V+ FL HP F + P D + K G P + DG F +R R
Sbjct: 382 DVVDQFLETHPNFELVPLDH--ERKDILKDGCILITPELYGSDGFFISRFRR 431
>gi|416124380|ref|ZP_11595376.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis FRI909]
gi|319401490|gb|EFV89700.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis FRI909]
Length = 435
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 127/422 (30%), Positives = 219/422 (51%), Gaps = 42/422 (9%)
Query: 104 TKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTF--SSMEPLLLQILRIGFYEI 161
T +++ D L T++V GT++ + LD+L+ K F + ++ + Q+L + Y+
Sbjct: 33 TNNINTVDKNLFTELVYGTLKRKYTLDYLL-------KPFIKTKIKSWVRQLLWMSLYQY 85
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
+ LD +P +A++ E V +AK GN+VNGILR ++ + LP E D +
Sbjct: 86 LYLDKIPNHAIIHEAVDIAKKRGGYHTGNIVNGILRTVMRTE------LPSFEDIDDTKK 139
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSF--SLRANSRKGVTRADLVMQL 278
R +A YS P W+V W + G E+ N SF + R ++R + +
Sbjct: 140 R-IAIQYSLPKWIVDHWVTHFGIEKT------ENIAQSFLEPIATTVRANISRGSIDSII 192
Query: 279 NLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQS 338
+ L+ + H + F +GL V+ + KEG ++QD+S+ +V V++
Sbjct: 193 SKLEQEGYHVKKDDMLPFCLHISGLP-VVNSNAFKEGYISIQDKSSMMVAYVMNLGRDDK 251
Query: 339 IVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT 398
++D C+APGGK +MA LS +G V A DI++ ++ ++ + K ++N++ H
Sbjct: 252 VLDACSAPGGKACHMAEILSPEGHVDATDIHEHKINLIKQNIKKLKLNNIKAFQHDATEV 311
Query: 399 FADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPG 458
+ DK+L+DAPCSGLGVL + ++++++ ++ L LQ ++L+ +KPG
Sbjct: 312 YNK----MYDKILVDAPCSGLGVLRHKPEIKYSQSQNSIKSLVELQLQILENVKDNIKPG 367
Query: 459 GVLVYSTCSIDPEENEERVEAFLLRHPEFSID----PADG-------LVPSDFVTKHGFF 507
G +VYSTC+I+ ENE + FL +H +F + PA G ++P DF GFF
Sbjct: 368 GTIVYSTCTIEQMENENVIYTFLKKHKDFEFEPFQNPATGEQVKTLQILPQDF-NSDGFF 426
Query: 508 FS 509
S
Sbjct: 427 IS 428
>gi|423335551|ref|ZP_17313326.1| rRNA methylase [Lactobacillus reuteri ATCC 53608]
gi|337728781|emb|CCC03900.1| rRNA methylase [Lactobacillus reuteri ATCC 53608]
Length = 449
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 134/424 (31%), Positives = 223/424 (52%), Gaps = 42/424 (9%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L D+D RL T+I+ G ++ + L++ + ++ ++P + +L Y+ L+
Sbjct: 41 LADKDRRLATNIIYGVLQHKLTLEYWLNGFVQGKR----LDPWVKTLLLSALYQYHYLER 96
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P +AV DE++ +AK PG V G+L ++ LP L + R L+
Sbjct: 97 VPDWAVTDESIEIAKRRGNPGIRKFVTGVLHAIL------RKGLPDLRQINERDLR-LSI 149
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
S P W+V T G+E+ K++ N +R N+ K T V Q+ L +
Sbjct: 150 ENSVPRWLVNELTSEYGEEDTEKILQSINEPAHQVIRVNTAK--TNLPTVKQV-LDAAGI 206
Query: 286 PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAA 345
++ S + + G +I + L K G +QDESA LVV + +PG ++D CAA
Sbjct: 207 EYQESQVAQNALVITKG--EIISSDLFKNGEITIQDESAMLVVESMHIEPGDKVLDACAA 264
Query: 346 PGGKTLYMASCLSGQ-GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHA-DLRT----F 399
PGGKT+ +A L+ + G V A+DI++ ++R++ + A+ V + T HA D R F
Sbjct: 265 PGGKTVQIAEALADEDGHVDALDIHQHKVRLIEKNARRLGVEKRV-TAHALDAREVDQLF 323
Query: 400 ADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGG 459
D S +K+L+DAPCSG+G+L ++ ++R+ + L D ++L +Q +L+A + VK GG
Sbjct: 324 DDES---FNKILVDAPCSGIGLLRRKPEIRYTKTLNDSKQLHKIQLAILNAVAAKVKKGG 380
Query: 460 VLVYSTCSIDPEENEERVEAFLLRHPEFSI--------------DPADGLVPSDFVTKHG 505
++ YSTC+I +EN++ V+AFL HPEF + P ++PSDF + G
Sbjct: 381 IITYSTCTILQQENDDTVQAFLAEHPEFELVKTTTARKVKDTRHSPTLTILPSDFDSD-G 439
Query: 506 FFFS 509
FF S
Sbjct: 440 FFIS 443
>gi|403514778|ref|YP_006655598.1| 16S rRNA methyltransferase B [Lactobacillus helveticus R0052]
gi|403080216|gb|AFR21794.1| 16S rRNA methyltransferase B [Lactobacillus helveticus R0052]
Length = 442
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 149/471 (31%), Positives = 240/471 (50%), Gaps = 47/471 (9%)
Query: 61 RAVSAVRLMRIQFGGAFADL-LNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIV 119
RA+S L+++ G+++++ LN K S DL D L T IV
Sbjct: 8 RAISLETLIKVLQNGSYSNISLNNSLKHS-----------------DLSIADQNLATRIV 50
Query: 120 GGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRL 178
GTI++R ++++ + L + T ++PLLL + Y+I+ LD +P AV+DE +L
Sbjct: 51 YGTIQYRLFVEYQLTGLLKTKITEKYLKPLLL----MSLYQIIFLDKVPNRAVLDEANKL 106
Query: 179 AKVALRPGAGN--LVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRR 236
AK + + +VNGILR + + LP +++ + L+ S P W+V+
Sbjct: 107 AKQFGKHHSSGYRVVNGILRAFI----RRGVILP----DEKDTTKYLSIKESVPEWLVKY 158
Query: 237 WTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEF 296
G ++A ++ N S+R +S R + QL Q P +L L++
Sbjct: 159 LIDNWGMQKAQSVLSSINDPAKNSVRISSL--ADRNKVFDQLKKEGYQ-PEWSNLSLNDA 215
Query: 297 IRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQS--IVDCCAAPGGKTLYMA 354
+ G+ + L ++G +QDE+A LVV D Q+ ++D C+APGGKT+ +A
Sbjct: 216 VLNHGGIS---ENDLFEQGKLTIQDEAASLVVEAFDFDQNQTEHVLDACSAPGGKTVQIA 272
Query: 355 SCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-NSTVKCDKVLLD 413
+ G V A+DI++ +LR++ E A+ V + T D R + K K+L+D
Sbjct: 273 ENIHGD--VTALDIHEKKLRLVKENARRMHVLDKVTTKACDARKAHEIFKAGKFTKILVD 330
Query: 414 APCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEEN 473
APCSGLG+L ++ ++R+ + L+D+ L+ +Q +LD+ S L+K G LVYSTCSI EEN
Sbjct: 331 APCSGLGLLRRKPEIRYTKSLQDLRNLQKIQLTILDSISKLLKAEGELVYSTCSISMEEN 390
Query: 474 EERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARL 524
EE V+ FL HP F + P S +K G P + DG F A+
Sbjct: 391 EEVVKQFLRIHPGFELKP---FSLSKLESKTGMLKIMPDQDGNDGFFIAKF 438
>gi|218282589|ref|ZP_03488827.1| hypothetical protein EUBIFOR_01409 [Eubacterium biforme DSM 3989]
gi|218216460|gb|EEC89998.1| hypothetical protein EUBIFOR_01409 [Eubacterium biforme DSM 3989]
Length = 397
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 129/428 (30%), Positives = 212/428 (49%), Gaps = 67/428 (15%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD 165
++D++D L T I GTI+ RY C C + + + P + +L + Y+++ LD
Sbjct: 29 EVDEKDRALATRIFYGTIQNYRY-----CKACWSKYVKNKLNPKMDVLLTMSTYQLLFLD 83
Query: 166 -MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P YA+V++ V +AK AG L N +L K+ ++ +N +A
Sbjct: 84 KVPSYAIVNDAVNIAKKINMKYAG-LTNAVLHKVKPIETDN-----------------MA 125
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQ 284
YS P W+ + WT GQE+A+ + ++ V + ++ N+L
Sbjct: 126 LKYSLPDWLYKMWTSQYGQEKALVM---------------AKASVNILPMYVRRNVLN-- 168
Query: 285 VPHELSLHLDEFIRVKTGL-----QNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSI 339
+E LD F+RV+ L + ++G + QDE + + VDPQ + I
Sbjct: 169 -TNESDFDLDMFVRVQDALYIYKGNDYFHHDYYQKGYMSAQDEGSFEIAKFVDPQENERI 227
Query: 340 VDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF 399
+DCCAAPG K++ MA + +G + A D++ R ++ AK I IHA ++
Sbjct: 228 LDCCAAPGTKSMAMAEMMHNKGHIDAYDLHAHRKDLIENDAK----RLGIDIIHAGVQDA 283
Query: 400 AD-NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPG 458
+ S+ D++L D PCSG GVLS++ D++ + EDM+ L LQ +L+ VK G
Sbjct: 284 TEFKSSNMYDRILCDVPCSGYGVLSRKPDIKLHMVPEDMDTLIPLQYSILNNVCQYVKVG 343
Query: 459 GVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDG 518
G LVYSTC+++ +ENE+++E FL H EFS+ + FS+ + DG
Sbjct: 344 GTLVYSTCTMNKKENEKQIEKFLKAHKEFSL------------VEEKTIFSNATQ---DG 388
Query: 519 AFAARLVR 526
+ A+LVR
Sbjct: 389 FYMAKLVR 396
>gi|420206463|ref|ZP_14711973.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIHLM008]
gi|394278302|gb|EJE22619.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIHLM008]
Length = 435
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 127/420 (30%), Positives = 221/420 (52%), Gaps = 38/420 (9%)
Query: 104 TKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTF--SSMEPLLLQILRIGFYEI 161
T +++ D L T++V GTI+ + LD+L+ K F + ++ + Q+L + Y+
Sbjct: 33 TNNINTVDKNLFTELVYGTIKRKYTLDYLL-------KPFIKTKIKSWVRQLLWMSLYQY 85
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
+ LD +P +A++ E V +AK GN+VNG+LR ++ + LP E D +
Sbjct: 86 LYLDKIPNHAIIHEAVDIAKKRGGYHTGNIVNGVLRTVMRTE------LPSFEDIDDTKK 139
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
R +A YS P W+V W + G E+ + + ++RAN ++R + ++
Sbjct: 140 R-IAIQYSLPKWIVDHWVTHFGVEKTENIARSFLEPVATTVRAN----ISRDSIDSIISK 194
Query: 281 LKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIV 340
L+ + H + F +G+ V+ + KEG ++QD+S+ +V V++ ++
Sbjct: 195 LEQEGYHVKKDDMLPFCLHISGMP-VVNSNAFKEGYISIQDKSSMMVAYVMNLGRDDKVL 253
Query: 341 DCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 400
D C+APGGK +MA LS +G V A DI++ ++ ++ + K ++N+ I+ D
Sbjct: 254 DACSAPGGKACHMAEILSPEGHVDATDIHEHKINLIKQNIKKLKLNN-IKAFQHDATEVY 312
Query: 401 DNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGV 460
D DK+L+DAPCSG GVL + ++++++ ++ L LQ ++L+ +KPGG
Sbjct: 313 DKM---YDKILVDAPCSGFGVLRHKPEIKYSQSQNSIKSLVELQLQILENVKDNIKPGGT 369
Query: 461 LVYSTCSIDPEENEERVEAFLLRHPEFSID----PADG-------LVPSDFVTKHGFFFS 509
+VYSTC+I+ ENE + FL RH +F + PA G ++P DF GFF S
Sbjct: 370 IVYSTCTIEQMENENVIYTFLKRHKDFEFEPFQNPATGEQVKTLQILPQDF-NSDGFFIS 428
>gi|75762655|ref|ZP_00742497.1| 16S rRNA m(5)C 967 methyltransferase [Bacillus thuringiensis
serovar israelensis ATCC 35646]
gi|74489854|gb|EAO53228.1| 16S rRNA m(5)C 967 methyltransferase [Bacillus thuringiensis
serovar israelensis ATCC 35646]
Length = 368
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 118/341 (34%), Positives = 189/341 (55%), Gaps = 17/341 (4%)
Query: 153 ILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPK 211
+LR+ Y+++ LD +P A + E V +AK G +VNG+LR + +P
Sbjct: 1 MLRLSLYQMIYLDRVPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSI------QREGVPS 54
Query: 212 LEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTR 271
++ R LA SHPVW+V+ WT G E A K+ N P + R N K VT
Sbjct: 55 VDEIKDPVER-LAIAMSHPVWLVQEWTSAYGLETAEKMCEVNMLPPVPTARVNVDK-VTV 112
Query: 272 ADLVMQLNLLKLQVPH-ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAV 330
+ + L ++ +LS D+ I+++ G NV K+G ++QDES+ LV
Sbjct: 113 EEAIELLASEGIEAKRGDLS---DDAIQIERG--NVAHTEAFKKGFLSIQDESSMLVARA 167
Query: 331 VDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIR 390
++P G++++D CAAPGGKT ++A L G G V ++D++ ++R++ + A+ + +V
Sbjct: 168 LEPNEGETVLDSCAAPGGKTTHIAERLKGTGKVMSLDLHAHKVRLIKQQAERLGLENV-E 226
Query: 391 TIHADLRTFADN-STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLD 449
T D R ++ S DK+L+DAPCSG GV+ ++ D++ + D E L +Q +L+
Sbjct: 227 TKALDARKVQEHFSNETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSERLSTIQLAILE 286
Query: 450 AASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSID 490
+ L+K GG LVYSTC+I+ ENE+ ++ FL HPEF D
Sbjct: 287 KIAPLLKQGGRLVYSTCTIEKIENEQVIDKFLKEHPEFEWD 327
>gi|124023762|ref|YP_001018069.1| Sun protein (Fmu protein) [Prochlorococcus marinus str. MIT 9303]
gi|123964048|gb|ABM78804.1| Sun protein (Fmu protein) [Prochlorococcus marinus str. MIT 9303]
Length = 450
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 146/448 (32%), Positives = 223/448 (49%), Gaps = 33/448 (7%)
Query: 65 AVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIR 124
A L++ GA+AD+ +ER L R + D LV ++ G IR
Sbjct: 24 AWELLQAVAAGAYADV--------------ALERAL--RQNPMSGADRGLVMELAYGAIR 67
Query: 125 WRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVAL 183
R++LD + L + P+L +L +G Y+I+++ +P A V+ +V LAK
Sbjct: 68 QRQWLDAWLDRL--GKVPACKQPPVLRWLLHLGLYQILRMQRIPAAAAVNTSVELAKTGK 125
Query: 184 RPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQ 243
+VNGILR + +D + LE D A AR LA S P+W+V + + G+
Sbjct: 126 LARLAPVVNGILRAALRARDAGMV---LLEPEDSA-AR-LAQAESLPLWLVEQLLVWRGE 180
Query: 244 EEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQ-VPHELSLHLDEFIRVKTG 302
A +N P+ LR N R+ +R ++ + L + ++ P E + + V
Sbjct: 181 VGAELFARASNQVPTLDLRINRRR-TSRENVRLALEAIGVESTPIE---SCPDGLMVTGS 236
Query: 303 LQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGL 362
++ Q ++G VQD SA LV ++ PQPG I+D CAAPGGK ++ + G G
Sbjct: 237 AGDLSQWPGYQQGHWCVQDRSAQLVAPLLGPQPGDRILDACAAPGGKATHLVELMGGSGE 296
Query: 363 VYAIDINKGRLRILNETAKLHQVNSVIRTIHAD---LRTFADNSTVKCDKVLLDAPCSGL 419
V+A+D + GRL+ L E A + + AD L + ++L+DAPCSGL
Sbjct: 297 VWAVDRSAGRLKRLAENAA-RLGGDCLHALVADATNLLAVKPSWRGSFQRILVDAPCSGL 355
Query: 420 GVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEA 479
G L++ AD RW +E L ILQ +LL+ L+ GG LVY+TC+I P EN ++++A
Sbjct: 356 GTLARHADARWRVTPLQVEGLVILQSKLLEGLLPLLSSGGRLVYATCTIHPAENFDQIKA 415
Query: 480 FLLRHPEFSIDPADGLVPSDFVTKHGFF 507
FL RHPE S+ L P GF+
Sbjct: 416 FLGRHPELSLSQEQQLWPDPEHGGDGFY 443
>gi|424779926|ref|ZP_18206812.1| Ribosomal RNA small subunit methyltransferase B [Catellicoccus
marimammalium M35/04/3]
gi|422843465|gb|EKU27902.1| Ribosomal RNA small subunit methyltransferase B [Catellicoccus
marimammalium M35/04/3]
Length = 452
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 153/499 (30%), Positives = 250/499 (50%), Gaps = 81/499 (16%)
Query: 38 TKKRAKVSP----SRRTQNLNLEVSPHRAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEM 93
+KK KVSP + R Q L + L+R++ A+++L+ KK K
Sbjct: 2 SKKERKVSPELEKTVRYQALEI------------LLRVRKNQAYSNLMIKKAK------- 42
Query: 94 GYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQI 153
++++D L+ ++V GTI R L++++ +K ++ + ++
Sbjct: 43 -------------VEEKDRALLAELVYGTISRRYTLEYILSPFIQGKK----VQDWVQEL 85
Query: 154 LRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVL--LKDNNSLPLP 210
L + Y+++ LD +P +AVVDE+V++AK PG G VNG+LR L+ LKD ++ P
Sbjct: 86 LLLALYQLLFLDRVPNHAVVDESVKIAKEKGNPGIGKFVNGVLRNLLRSDLKDPRAIQDP 145
Query: 211 KLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVT 270
L+ +YS P +V G++EA L+ + S R R+
Sbjct: 146 ---------IERLSIMYSVPKDLVSLIVDQYGKKEAEDLLASLLTPSHASARLTKRED-D 195
Query: 271 RADLVMQLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAV 330
R D + L V E + D I TG ++ + KEG +QDES+ LV
Sbjct: 196 REDCLETLKKEGFSV-KESPVSPDGII-AATG--HLAGSKAFKEGRITIQDESSMLVAPA 251
Query: 331 VDPQPGQSIVDCCAAPGGKTLYMASCLSGQ--GLVYAIDINKGRLRILNETAKLHQVNSV 388
+ +P ++D CAAPGGKT ++AS L G V A+DI++ + ++ ETA V
Sbjct: 252 LQVEPQHQVLDACAAPGGKTGHIASYLDATQGGKVTALDIHQHKCELIEETAARLHVTDR 311
Query: 389 IRTIHADLR----TFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQ 444
+ D R TFA S D++L+DAPCSGLG++ ++ D+++++ + D+ L +Q
Sbjct: 312 VTAQTLDARKVGDTFAKES---FDRILVDAPCSGLGLMRRKPDIKYSKSITDLSRLSTIQ 368
Query: 445 DELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADG---------- 494
++L+A + +K GG++VYSTC+I+ EENE V FL HPEF++ P G
Sbjct: 369 LQILNACAPCLKQGGIMVYSTCTINKEENEAVVTQFLKEHPEFTLIPVQGAESIPASVHP 428
Query: 495 ----LVPSDFVTKHGFFFS 509
++P + T GFF S
Sbjct: 429 LGVTILPHQYHTD-GFFIS 446
>gi|418325013|ref|ZP_12936223.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis VCU071]
gi|365228919|gb|EHM70091.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis VCU071]
Length = 435
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 128/420 (30%), Positives = 221/420 (52%), Gaps = 38/420 (9%)
Query: 104 TKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTF--SSMEPLLLQILRIGFYEI 161
T +++ D L T++V GTI+ + LD+L+ K F + ++ + Q+L + Y+
Sbjct: 33 TNNINTVDKNLFTELVYGTIKRKYTLDYLL-------KPFIKTKIKSWVRQLLWMSLYQY 85
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
+ LD +P +A++ E V +AK GN+VNGILR ++ + LP E D +
Sbjct: 86 LYLDKIPNHAIIHEAVDIAKKRGGYHTGNIVNGILRTVMRTE------LPNFEDIDDTKK 139
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
R +A YS P W+V W + G E+ + + ++RAN ++R + ++
Sbjct: 140 R-IAIQYSLPKWIVDHWVTHFGVEKTENIARSFLEPVATTVRAN----ISRDSIDSIISK 194
Query: 281 LKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIV 340
L+ + H + F +G+ V+ + KEG ++QD+S+ +V V++ ++
Sbjct: 195 LEQEGYHVKKDDMLPFCLHISGMP-VVNSNAFKEGYISIQDKSSMMVAYVMNLGRDDKVL 253
Query: 341 DCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 400
D C+APGGK +MA LS +G V A DI++ ++ ++ + ++N+ I+ D
Sbjct: 254 DACSAPGGKACHMAEILSPEGHVDATDIHEHKINLIKQNITKLKLNN-IKAFQHDATEVY 312
Query: 401 DNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGV 460
D DK+L+DAPCSGLGVL + ++++++ ++ L LQ ++L+ +KPGG
Sbjct: 313 DKM---YDKILVDAPCSGLGVLRHKPEIKYSQSQNSIKSLVELQLQILENVKDNIKPGGT 369
Query: 461 LVYSTCSIDPEENEERVEAFLLRHPEFSID----PADG-------LVPSDFVTKHGFFFS 509
+VYSTC+I+ ENE + FL RH +F + PA G ++P DF GFF S
Sbjct: 370 IVYSTCTIEQMENENVIYTFLKRHKDFEFEPFQNPATGEQVKTLQILPQDF-NSDGFFIS 428
>gi|228922619|ref|ZP_04085919.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
thuringiensis serovar huazhongensis BGSC 4BD1]
gi|228837048|gb|EEM82389.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
thuringiensis serovar huazhongensis BGSC 4BD1]
Length = 368
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 119/341 (34%), Positives = 189/341 (55%), Gaps = 17/341 (4%)
Query: 153 ILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPK 211
+LR+ Y+++ LD +P A + E V +AK G +VNG+LR + +P
Sbjct: 1 MLRLSLYQMIYLDRVPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSI----QREGVPSVD 56
Query: 212 LEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTR 271
E D + A+ T SHPVW+V+ WT G E A K+ N P + R N K VT
Sbjct: 57 -EIKDPVERLAITT--SHPVWLVQEWTSEYGLETAEKMCEVNMLPPVPTARVNVDK-VTV 112
Query: 272 ADLVMQLNLLKLQVPH-ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAV 330
+ + L ++ +LS D+ I+++ G NV K+G ++QDES+ LV
Sbjct: 113 EEAIELLASEGIEAKRGDLS---DDAIQIERG--NVAHTEAFKKGFLSIQDESSMLVARA 167
Query: 331 VDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIR 390
++P G +++D CAAPGGKT ++A L G G V ++D++ ++R++ + A+ + +V
Sbjct: 168 LEPNTGDAVLDSCAAPGGKTTHIAERLKGTGKVMSLDLHAHKVRLIKQQAERLGLENV-E 226
Query: 391 TIHADLRTFADN-STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLD 449
T D R ++ + DK+L+DAPCSG GV+ ++ D++ + D E L +Q +L+
Sbjct: 227 TKALDARKVQEHFANETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSERLSTIQIAILE 286
Query: 450 AASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSID 490
+ L+K GG LVYSTC+I+ ENE+ +E FL HPEF D
Sbjct: 287 KIAPLLKQGGRLVYSTCTIEKIENEQVIEKFLQEHPEFEWD 327
>gi|161507728|ref|YP_001577689.1| rRNA methylase [Lactobacillus helveticus DPC 4571]
gi|260101420|ref|ZP_05751657.1| RNA methyltransferase Sun [Lactobacillus helveticus DSM 20075]
gi|160348717|gb|ABX27391.1| rRNA methylase [Lactobacillus helveticus DPC 4571]
gi|260084760|gb|EEW68880.1| RNA methyltransferase Sun [Lactobacillus helveticus DSM 20075]
Length = 454
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 149/471 (31%), Positives = 241/471 (51%), Gaps = 47/471 (9%)
Query: 61 RAVSAVRLMRIQFGGAFADL-LNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIV 119
RA+S L+++ G+++++ LN K S DL D L T IV
Sbjct: 20 RAISLETLIKVLQNGSYSNISLNNSLKHS-----------------DLSIADQNLATRIV 62
Query: 120 GGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRL 178
GTI++R +L++ + L + T ++PLLL + Y+I+ LD +P AV+DE +L
Sbjct: 63 YGTIQYRLFLEYQLTGLLKTKITEKYLKPLLL----MSLYQIIFLDKVPNRAVLDEANKL 118
Query: 179 AKVALRPGAGN--LVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRR 236
AK + + +VNGILR + + LP +++ + L+ S P W+V+
Sbjct: 119 AKQFGKHHSSGYRVVNGILRAFI----RRGVILP----DEKDTIKYLSIKESVPEWLVKY 170
Query: 237 WTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEF 296
G ++A ++ N S+R +S R + QL Q P +L L++
Sbjct: 171 LIDNWGMQKAQSVLSSINDPAKNSVRISSL--ADRNKVFDQLKKEGYQ-PEWSNLSLNDA 227
Query: 297 IRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQS--IVDCCAAPGGKTLYMA 354
+ G+ ++ L ++G +QDE+A LVV D Q+ ++D C+APGGKT+ +A
Sbjct: 228 VLSHGGIS---ESDLFEQGKLIIQDEAASLVVEAFDFDQNQTEHVLDACSAPGGKTVQIA 284
Query: 355 SCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTV-KCDKVLLD 413
+ G V A+DI++ +LR++ E A+ V + T D R + + K+L+D
Sbjct: 285 ENIHGD--VTALDIHEKKLRLVKENARRMHVLDKVTTKACDARKAHEIFKAGEFTKILVD 342
Query: 414 APCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEEN 473
APCSGLG+L ++ ++R+ + L+D+ L+ +Q +LD+ S L+K G LVYSTCSI EEN
Sbjct: 343 APCSGLGLLRRKPEIRYTKSLQDLRNLQKIQLTILDSISKLLKAEGELVYSTCSISMEEN 402
Query: 474 EERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARL 524
EE V+ FL HP F + P S +K G P + DG F A+
Sbjct: 403 EEVVKRFLRIHPGFELKP---FSLSKLESKTGMLKIMPDQDGNDGFFIAKF 450
>gi|387818730|ref|YP_005679077.1| ribosomal RNA small subunit methyltransferase B [Clostridium
botulinum H04402 065]
gi|322806774|emb|CBZ04343.1| ribosomal RNA small subunit methyltransferase B [Clostridium
botulinum H04402 065]
Length = 442
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 126/421 (29%), Positives = 222/421 (52%), Gaps = 17/421 (4%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD 165
+L D D L+T+IV GT++++ LD I + + +M+ ++ ILRI Y+I LD
Sbjct: 34 NLKDNDKALITEIVYGTLKYKETLD--IIIQSYLRNPIKTMDKNIVNILRITIYQIRYLD 91
Query: 166 -MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P +A V+E V ++K + LVNG+LR + N + R +
Sbjct: 92 KIPSFAAVNEAVEMSK-KISIKYSKLVNGVLRNYIRTYKNKKFY------DHRNNLEKFS 144
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQ 284
+YS+P W+++ + G E A K++ N P+ ++R N+ K + + +L
Sbjct: 145 FMYSYPKWLIKMFISQYGIEIAEKILKGLNERPNITVRVNNLK-IDYDEAFEKLGEYGYN 203
Query: 285 VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 344
+ E E I++ G +N+ + L EG VQDESA LV ++ ++D C+
Sbjct: 204 I--EEGYICPEAIQIIKG-KNIEKNPLFIEGNITVQDESAMLVAPSMELDEESIVLDLCS 260
Query: 345 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNST 404
APGGKT +++ ++ + VYA D+++ +L ++ AK + + I T D F
Sbjct: 261 APGGKTTHISEIMNNKSKVYAYDVHQNKLSLIESNAKRLGIKN-IETDVGDAAVFNKKLK 319
Query: 405 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464
K +VL+D PCSGLG++ K+ +++W + +++ + +Q ++++ + ++ GG+L+YS
Sbjct: 320 EKAHRVLMDVPCSGLGIIRKKPEIKWTKNEREIKNIIAIQRKIMNNGASYLEEGGILLYS 379
Query: 465 TCSIDPEENEERVEAFLLRHPEFSIDP-ADGLVPSDFVTKHGFFFSDPIKHSLDGAFAAR 523
TC+++ EENEE + FL +H F I+P G V + K GF P +DG F A+
Sbjct: 380 TCTLNKEENEENINWFLKKHKNFKIEPLYYGDVDNIIYHKEGFVSILP-NDKMDGFFIAK 438
Query: 524 L 524
L
Sbjct: 439 L 439
>gi|343520828|ref|ZP_08757797.1| ribosomal RNA small subunit methyltransferase B [Parvimonas sp.
oral taxon 393 str. F0440]
gi|343397786|gb|EGV10320.1| ribosomal RNA small subunit methyltransferase B [Parvimonas sp.
oral taxon 393 str. F0440]
Length = 434
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 125/421 (29%), Positives = 213/421 (50%), Gaps = 22/421 (5%)
Query: 104 TKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVK 163
TK++ D D + + +IV GT+ R YLD++I LC + P +L ILRI Y+I+
Sbjct: 27 TKNISDLDSKFLREIVYGTLENRIYLDYIIKKLC--KLRIKKFNPYILNILRISIYQIIF 84
Query: 164 LD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARA 222
+D +P +A+++E V L KV + VNG LR + N K+E +D +A +
Sbjct: 85 MDKIPEFAIINEAVNLTKVFKLKKFSSFVNGSLRNFL----RNKEDFIKIEADDVEEAIS 140
Query: 223 LATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLK 282
+ YS + +V+ G+EE IK++ + P F++R +S + T +V L
Sbjct: 141 IK--YSANMDIVKILLSDYGREETIKILENSMFKPHFAIRISSFEK-TEEKVVKDLKKDG 197
Query: 283 LQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 342
++ + +F N+++ K G VQD + L V+ P+ ++D
Sbjct: 198 YKLKKS---EISKFTYFVENPTNILETESFKRGDFTVQDVGSILTGEVLAPKENSKVLDI 254
Query: 343 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN 402
C+APGGKT ++A + G ++A DI K +L+ + E K + +V + ++ D + +
Sbjct: 255 CSAPGGKTCHLAFQMKNSGEIFANDIVKSKLKKIEENCKRLNIKNV-KLLNFDASIYKEE 313
Query: 403 STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLV 462
+ D +L D CSG+GV+ ++ +++ R E ++E+ LQ ++ D A +K G +V
Sbjct: 314 YKEQFDYILCDVICSGIGVMDRKPEIKLFRSQETIDEIIELQRKIFDNAVEYLKDKGEIV 373
Query: 463 YSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTK--------HGFFFSDPIKH 514
YSTCS+ ENEE V+ FL +H I + L S+ K +GFF IK
Sbjct: 374 YSTCSVLKCENEENVKYFLEKHKNLKIKDVEFLGKSEKFIKLLPEKQKHNGFFIIKFIKE 433
Query: 515 S 515
+
Sbjct: 434 N 434
>gi|91204618|emb|CAJ70846.1| conserved hypothetical protein [Candidatus Kuenenia
stuttgartiensis]
Length = 462
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 134/422 (31%), Positives = 202/422 (47%), Gaps = 42/422 (9%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD 165
++ RD L+ ++V G R R LD ++ + +EP LL LR+G Y+++ LD
Sbjct: 33 NVSRRDKHLLLELVNGITRHRLSLDTILSFF--SKIPPQKIEPWLLYALRLGIYQMIFLD 90
Query: 166 MPPY-AVVDENVRLAKVALR-PGAGNLVNGILR--------------------KLVLLKD 203
P+ A V+ +V L K +R P A N ILR KL+ K+
Sbjct: 91 KIPHSAAVNTSVELVKNLIRRPDAARFANAILRAVDRTIKNKYSVNHKNVNQQKLLYKKE 150
Query: 204 N--NSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSL 261
N P +A YSHP W+++RW G ++ I++ NN P+ SL
Sbjct: 151 NVWCEFSEPIFPDPGENLTSYIAKNYSHPEWLIKRWLTRYGIDKTIEICKANNHIPTLSL 210
Query: 262 RANSRKGVTR--ADLVMQLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAV 319
R N K A L+ Q +L + + + + G N GL +V
Sbjct: 211 RINHNKTSINEFASLLEQNGILARVIDNNALIINKSVVSDIPGFSN---------GLFSV 261
Query: 320 QDESA---GLVVAVVDPQPGQ-SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRI 375
QD ++ G + P G +++D CAAPGGKT ++A + +G +YA+DI+ RL
Sbjct: 262 QDITSMKVGTFLIAETPTAGAITLLDMCAAPGGKTTHIAEIIQNKGSIYALDISLKRLHR 321
Query: 376 LNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLE 435
+ E + + + I I D K D+VL D PCS GVLS+R + RW +
Sbjct: 322 VKENCQRLGIKN-ITIICCDASEGKIPFRGKFDRVLADVPCSNTGVLSRRVEARWRITEK 380
Query: 436 DMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGL 495
++++L LQ LL S ++K G+LVYSTCSI+PEEN+E V+ FL P+F +D D
Sbjct: 381 NIKQLAALQYSLLKTGSTMLKQDGILVYSTCSIEPEENQEVVQKFLKNEPQFYLDKEDCY 440
Query: 496 VP 497
P
Sbjct: 441 SP 442
>gi|313885233|ref|ZP_07818985.1| ribosomal RNA small subunit methyltransferase B [Eremococcus
coleocola ACS-139-V-Col8]
gi|312619924|gb|EFR31361.1| ribosomal RNA small subunit methyltransferase B [Eremococcus
coleocola ACS-139-V-Col8]
Length = 456
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 127/427 (29%), Positives = 217/427 (50%), Gaps = 37/427 (8%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPY 169
D LV +V G I+ R LD+ + +K ++ + +LR+ Y+ + LD +P +
Sbjct: 50 DTNLVVKLVYGVIQRRYSLDYFLAPFIKGKK----VDDWVASLLRLSIYQFIYLDRIPDH 105
Query: 170 AVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSH 229
AV + V +AK+ G G VNG+LR D L L KLE +ALA YS
Sbjct: 106 AVFSQAVEMAKLIGHAGLGGFVNGVLRNFQRRAD---LDLNKLENP----LQALAVKYSI 158
Query: 230 PVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLR--------ANSRKGVTRADLVMQLNLL 281
W+++ + + + L+ +P S R +R+ ++ L Q + +
Sbjct: 159 APWIIKELQHQISEADLEALLGSLLEEPYVSARIVKSGLNSQAAREQLSEEGLTSQASPI 218
Query: 282 KLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVD 341
P L R ++G N + + L ++G +QDES+ LV ++ Q G +++D
Sbjct: 219 S---PVGL--------RFESG--NPVHSSLFQQGALTIQDESSQLVASLGKLQAGMTVLD 265
Query: 342 CCAAPGGKTLYMASCLS--GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF 399
CAAPGGK ++A L G G + A+DI+ +L +++ + ++ + D F
Sbjct: 266 ACAAPGGKATHIAQILRDLGGGKLQALDISSAKLTKVDDHLQRLGLSQFVSLQVEDASKF 325
Query: 400 ADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGG 459
D++ LDAPCSGLG++ ++ +++++++ ++ L +Q ELL+ S L+KPGG
Sbjct: 326 IPTDGKLYDRIYLDAPCSGLGLMRRKPEIKYSKQANHIQALAEIQAELLNHTSSLLKPGG 385
Query: 460 VLVYSTCSIDPEENEERVEAFLLRHPEFSIDP--ADGLVPSDFVTKHGFFFSDPIKHSLD 517
L+YSTC++ +ENEE+V AFL H +F +D AD ++ + + G P ++ D
Sbjct: 386 YLIYSTCTLASQENEEQVGAFLQEHEDFELDQIIADEVMAAGLINDQGMIRIWPHQYHTD 445
Query: 518 GAFAARL 524
G F ARL
Sbjct: 446 GFFIARL 452
>gi|380032453|ref|YP_004889444.1| 16S rRNA m(5)C 967 methyltransferase [Lactobacillus plantarum
WCFS1]
gi|342241696|emb|CCC78930.1| 16S rRNA m(5)C 967 methyltransferase [Lactobacillus plantarum
WCFS1]
Length = 447
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 125/425 (29%), Positives = 216/425 (50%), Gaps = 25/425 (5%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDH-LICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD 165
+D RD+ L+T++V G I+ R L++ L + H + ++P + ++L Y+ LD
Sbjct: 38 MDRRDINLLTNMVYGVIQHRLTLEYWLTPFVRHPHQ----IDPWVRELLLSALYQWQYLD 93
Query: 166 -MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P AV +E + +AKV PG V G+L ++ + LP + R L+
Sbjct: 94 KIPQRAVFNETIEIAKVKGHPGIRRFVTGVLHQM------DRSGLPSFDAIKNPDER-LS 146
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQ 284
YS P+W+++ + LG E+ +++ N +LR N +N
Sbjct: 147 VTYSMPIWLIQELRRQLGAEKMERILSSLNQPAKQALRVNPALSTVEDVTTALINDGLTI 206
Query: 285 VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 344
P E+S + T Q I ++ G+ VQDESA LVV ++PQP ++D CA
Sbjct: 207 TPSEIS----PLGLIATDGQ-AINTEAMRYGMFTVQDESAQLVVPALNPQPNDRVLDACA 261
Query: 345 APGGKTLYMASCLSGQ--GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN 402
APGGKT +A+ L + G V A+DI+ +++++ + A V + D R
Sbjct: 262 APGGKTTQIAASLDAEQGGTVVALDIHANKVKLIGQNAARMHVADRVEATELDARKVETQ 321
Query: 403 STVKC-DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVL 461
+ D++L+DAPCSGLG++ ++ ++R+ ++L+D L+ +Q +L A + +K GG++
Sbjct: 322 FNAESFDRILVDAPCSGLGLMRRKPEIRYEKQLQDSLNLQRIQLAILTAVAPTLKKGGIM 381
Query: 462 VYSTCSIDPEENEERVEAFLLRHPEFSID--PADGLVPSDFVTKHGFFFSDPIKHSLDGA 519
YSTC+I +EN++ + FL HP+F + P + + +D K + D + DG
Sbjct: 382 TYSTCTILQQENQDVITKFLADHPDFELQTTPTERDLKTDRTEKTLSIYPD--DYLSDGF 439
Query: 520 FAARL 524
F A L
Sbjct: 440 FIACL 444
>gi|373115333|ref|ZP_09529508.1| ribosomal RNA small subunit methyltransferase B [Lachnospiraceae
bacterium 7_1_58FAA]
gi|371670487|gb|EHO35567.1| ribosomal RNA small subunit methyltransferase B [Lachnospiraceae
bacterium 7_1_58FAA]
Length = 436
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 143/440 (32%), Positives = 224/440 (50%), Gaps = 35/440 (7%)
Query: 94 GYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQI 153
GY+++ +G LD RD L T + G ++ R LD + LC +E + +
Sbjct: 24 GYLKKAIG--GAKLDGRDAALATRLCFGVLQNRMLLDFYLSKLC--ATPLHKLEASIRNL 79
Query: 154 LRIGFYEIVKLD-MPPYAVVDENVRLA-KVALRPGAGNLVNGILRKLVLLKDNNSLPLPK 211
LR+G Y+++ L+ +P +A V E V LA K A P A LVNG+LR L+ ++ P
Sbjct: 80 LRLGAYQLLYLNRVPDHAAVSEAVSLARKKAKNPRAAGLVNGVLRSLIRQREAMEPPAD- 138
Query: 212 LEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTR 271
L+T YSHP W+V + LG+EEA L+ +N +P + N+ K ++
Sbjct: 139 -----------LSTRYSHPQWLVDSFVARLGREEAEALLAADNGEPPTCAQVNTLK-ISA 186
Query: 272 ADLVMQLNLLKLQV-PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAV 330
+L L + V PH D TG ++A ++G +QD +A L V
Sbjct: 187 EELAAMLTAEGVAVEPH--PWLPDCLFLNGTGSLEHLEA--FQKGYFYIQDAAAHLAVLA 242
Query: 331 VDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIR 390
PQPG ++D CAAPGGK+ A + +G V + DI+ +LR++ A ++ +
Sbjct: 243 AAPQPGWRVLDACAAPGGKSFAAAIAMENRGSVTSCDIHPHKLRLIE--AGYQRLG--LD 298
Query: 391 TIHADLRTFADNSTV---KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDEL 447
IHA+L + D ++ D PCSGLG++ K+ D+R+ + E +E L +Q +
Sbjct: 299 IIHANLLDGKERKAELLNSFDLIIADVPCSGLGIIRKKPDIRY-KDPEPLENLPCVQAAI 357
Query: 448 LDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFV-TKHGF 506
LD + V+PGGVL+Y+TC++ ENE V AFL + +F+++ V F+ T G
Sbjct: 358 LDNVADYVRPGGVLLYATCTLLERENEGVVRAFLDKQRDFTLEGFQ--VSGPFLDTDTGM 415
Query: 507 FFSDPIKHSLDGAFAARLVR 526
P +H DG F A+L R
Sbjct: 416 LTCWPHRHGTDGFFFAKLRR 435
>gi|294638022|ref|ZP_06716282.1| ribosomal RNA small subunit methyltransferase B [Edwardsiella tarda
ATCC 23685]
gi|451967545|ref|ZP_21920784.1| 16S rRNA methyltransferase RsmB [Edwardsiella tarda NBRC 105688]
gi|291088814|gb|EFE21375.1| ribosomal RNA small subunit methyltransferase B [Edwardsiella tarda
ATCC 23685]
gi|451313644|dbj|GAC66146.1| 16S rRNA methyltransferase RsmB [Edwardsiella tarda NBRC 105688]
Length = 430
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 134/426 (31%), Positives = 217/426 (50%), Gaps = 31/426 (7%)
Query: 104 TKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVK 163
+ L ++D L+ ++ GT+R L+ ++ L K + + L +L +G Y++V
Sbjct: 34 AQSLSEKDRALLQELCFGTLRVLPQLEWILQQLM--AKALTGKQRPLHYLLMVGLYQLVY 91
Query: 164 LDMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARAL 223
+PP+A + E V A RP L+NG+LR+ + +L L Q++
Sbjct: 92 TRIPPHAALAETVDGATALKRPQLKGLINGVLRQFQ--RQQEALLL---------QSQQH 140
Query: 224 ATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKL 283
A+ + HP W+++R ++ E+ ++ NN P LR N R A L +
Sbjct: 141 ASHWLHPSWLLKR-LQHAYPEQWPAIVEANNQRPPMWLRVNRRHHTRDAYLTLLQQAGIE 199
Query: 284 QVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCC 343
V H+ H + IR+ Q V + + G VQD SA V ++DP G+ I+D C
Sbjct: 200 AVAHD---HFPDAIRLLVA-QPVTRLPGFEHGWVTVQDASAQHCVDLLDPHDGEQILDLC 255
Query: 344 AAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF-ADN 402
APGGKT ++ + + V A+D ++ RL+ + E + Q + +R D RT A
Sbjct: 256 CAPGGKTTHILEA-APKAQVLAVDADEQRLKRVRENLQRLQQQAEVRC--GDGRTPDAWA 312
Query: 403 STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLV 462
+ + D++LLDAPCS GV+ + D++W RR D+ EL LQ E+L+A L+KPGGV+V
Sbjct: 313 NGRQFDRILLDAPCSATGVIRRHPDIKWLRRDSDIAELAALQREILEAVWPLLKPGGVMV 372
Query: 463 YSTCSIDPEENEERVEAFLLRHPEFSI-DPADGLVPSDFVTKHGFFFSDPIKHSLDGAFA 521
Y+TCS+ P+EN E++ AFL H + + + D P G + P DG F
Sbjct: 373 YATCSVLPQENREQILAFLAHHDDARLAETGDAQQP-------GLQYL-PQSEGGDGFFY 424
Query: 522 ARLVRA 527
A+L++A
Sbjct: 425 AKLIKA 430
>gi|170758272|ref|YP_001787822.1| ribosomal RNA small subunit methyltransferase B [Clostridium
botulinum A3 str. Loch Maree]
gi|169405261|gb|ACA53672.1| ribosomal RNA small subunit methyltransferase B [Clostridium
botulinum A3 str. Loch Maree]
Length = 442
Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 127/421 (30%), Positives = 222/421 (52%), Gaps = 17/421 (4%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD 165
+L D D L+T+IV GT++++ LD I + + +M+ ++ ILRI Y+I LD
Sbjct: 34 NLKDNDKALITEIVYGTLKYKETLD--IIIQSYLRNPIKTMDKNIVNILRITIYQIRYLD 91
Query: 166 -MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P +A V+E V ++K + LVNG+LR + N + R +
Sbjct: 92 KIPSFAAVNEAVEMSK-KISIKYSKLVNGVLRNYIRTYKNKKFY------DHRNNLEKFS 144
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQ 284
+YS+P W+++ + G E A K++ N P+ ++R N+ K + + +L
Sbjct: 145 FMYSYPKWLIKMFISQYGIEIAEKILKGLNERPNITVRVNNLK-IDYDEAFEKLGEYGYN 203
Query: 285 VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 344
+ E E I++ G +N+ + L EG VQDESA LV ++ ++D C+
Sbjct: 204 I--EEGYICPEAIQIIKG-KNIEKNPLFIEGNITVQDESAMLVAPSMELDEESIVLDLCS 260
Query: 345 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNST 404
APGGKT +++ ++ + VYA DI++ +L ++ AK + + I T D F
Sbjct: 261 APGGKTTHISEIMNNKSKVYAYDIHQNKLSLIEANAKRLGIKN-IETDVGDAAVFNKKLK 319
Query: 405 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464
K +V++D PCSGLG++ K+ +++W + +++ + +Q ++++ + +K GG+L+YS
Sbjct: 320 EKAYRVVMDVPCSGLGIIRKKPEIKWTKNEREIKNIIDIQRKIMNNGASYLKEGGILLYS 379
Query: 465 TCSIDPEENEERVEAFLLRHPEFSIDP-ADGLVPSDFVTKHGFFFSDPIKHSLDGAFAAR 523
TC+++ EENEE + FL +H F I+P G V + K GF P +DG F A+
Sbjct: 380 TCTLNKEENEENINWFLKKHKNFKIEPLYYGDVDNIIYHKEGFVSILP-NDKMDGFFIAK 438
Query: 524 L 524
L
Sbjct: 439 L 439
>gi|338530020|ref|YP_004663354.1| ribosomal RNA small subunit methyltransferase B [Myxococcus fulvus
HW-1]
gi|337256116|gb|AEI62276.1| ribosomal RNA small subunit methyltransferase B [Myxococcus fulvus
HW-1]
Length = 438
Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 139/427 (32%), Positives = 210/427 (49%), Gaps = 30/427 (7%)
Query: 108 DDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMP 167
D RD LVT++ G R + LD+ I ++ ++E +L LRIG Y+I +P
Sbjct: 36 DPRDAALVTELAYGATRRQLALDYAIARFA--DRKLDALEDKVLAALRIGAYQIFHTRVP 93
Query: 168 PYAVVDENVR-LAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATI 226
A V E V+ L +V L AG N ILRKL L P + A L+
Sbjct: 94 ARAAVAETVQALKEVGLTRAAG-FTNAILRKLADLPAPPLPPASDV-------ALHLSVR 145
Query: 227 YSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLL----K 282
SHP W+V RW + G+E A ++V +N P+ +RAN+ K VTR L+ QL + K
Sbjct: 146 ESHPQWLVERWLRQFGRERAEAMLVADNQAPAVVVRANTAK-VTRDALLTQLQEMGVDAK 204
Query: 283 LQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 342
+ + L RV ++V EGL VQDE+A LV ++D
Sbjct: 205 ATTVSPVGITLPPVGRV----EDVYG---YAEGLWQVQDEAAQLVGVYGAIPESARVLDA 257
Query: 343 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN 402
CAAPGGK+ + A V A+D++ +LR ++ AK + ++ D
Sbjct: 258 CAAPGGKSCHQAQSHD----VVAVDLHAHKLRKIDAEAKRLGLQPRLKAYAHDAAEPFPE 313
Query: 403 STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLV 462
+ L+DAPCSGLG L + +LR+ R+ ED+ L LQ +L+ V GG+LV
Sbjct: 314 EWGEFHAFLVDAPCSGLGTLRRHPELRYRRKEEDISRLATLQRRILENCQEAVPAGGLLV 373
Query: 463 YSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPS-DFVTKHGFFFSDPIKHSLDGAFA 521
Y+ C+++P+E +++VE FL HPE++ +P ++P + + P DG FA
Sbjct: 374 YAVCTMEPQEGQDQVEMFLRSHPEWTAEPP--VLPGLKLPLSQAYLRTLPGPEGFDGFFA 431
Query: 522 ARLVRAF 528
ARL + +
Sbjct: 432 ARLRKLY 438
>gi|422007064|ref|ZP_16354051.1| 16S rRNA methyltransferase B [Providencia rettgeri Dmel1]
gi|414097910|gb|EKT59562.1| 16S rRNA methyltransferase B [Providencia rettgeri Dmel1]
Length = 427
Score = 182 bits (462), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 138/431 (32%), Positives = 219/431 (50%), Gaps = 48/431 (11%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
++++D+D L+ +I G +R+ L+ I L EK + + L ++ +G Y+++
Sbjct: 34 RNINDKDKALLQEICFGVLRYLPKLEWFISQLM--EKPLTGKQRTLHYLIMVGIYQLLYT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+PP+A + E V A +P L+NG+LR + L + N+ +Q
Sbjct: 92 RIPPHAALAETVNGAVALKKPQLKGLINGVLRSF----QRQQVQLEERITNNTSQ----- 142
Query: 225 TIYSHPVWMVRR-WTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLK- 282
Y HP W+++R T Y ++I + NN P LR NS+ LNLL+
Sbjct: 143 --YLHPSWLLKRLQTAYPDDWQSI--IEANNQRPPMWLRVNSQHHTA----TQYLNLLEQ 194
Query: 283 ------LQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPG 336
L H ++ LDE V + ++G VQD SA +++PQ G
Sbjct: 195 SEITAHLHSSHPNAIRLDEPTAVS-------RLPGFEDGWSTVQDISAQGCAELLEPQNG 247
Query: 337 QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNET-AKLHQVNSVIRTIHAD 395
++I+D CAAPGGKT ++ L+ + V A+DI++ RL+ + E +L Q VI+
Sbjct: 248 ENILDLCAAPGGKTTHILE-LAPKANVIAVDIDESRLKRVKENLIRLKQHAVVIQGDGTQ 306
Query: 396 LRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLV 455
T+A + D++LLDAPCS GV+ + D++W RR D+ EL LQ ++L+A +
Sbjct: 307 PETWAQGQ--QFDRILLDAPCSATGVIRRHPDIKWLRRDSDINELAQLQSQILEAIWPYL 364
Query: 456 KPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHS 515
KPGG LVY+TCSI PEEN +++ FL +H + ++ DG T G P +
Sbjct: 365 KPGGTLVYATCSIMPEENGKQIHNFLSKHNDACLN--DG-------TDAGLQIL-PSTNG 414
Query: 516 LDGAFAARLVR 526
DG F ARLV+
Sbjct: 415 GDGFFYARLVK 425
>gi|226323830|ref|ZP_03799348.1| hypothetical protein COPCOM_01605 [Coprococcus comes ATCC 27758]
gi|225208014|gb|EEG90368.1| putative ribosomal RNA small subunit methyltransferase B
[Coprococcus comes ATCC 27758]
Length = 357
Score = 182 bits (462), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 122/372 (32%), Positives = 187/372 (50%), Gaps = 22/372 (5%)
Query: 146 MEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNL---VNGILRKLVLL 201
M+P++ ILR Y+I +D +P A +E V LA +R G NL VNG+LR +
Sbjct: 1 MKPVIRNILRCAVYQIKYMDQVPDSAACNEAVNLA---IRKGFKNLRGFVNGVLRNIARN 57
Query: 202 KDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSL 261
D + P E L+ YS P W++R W + G+E+ ++ + + ++
Sbjct: 58 IDKIAYPENTEE--------FLSIKYSMPQWIIRMWVRDYGEEKTKYILEGFYKERATTI 109
Query: 262 RANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQD 321
R N T+ +L+ +L +QV L I +G + +EG VQD
Sbjct: 110 RING-NATTKEELIRELTGEGIQVKEHPLLASALLI---SGYDYLAAIPAFREGKFQVQD 165
Query: 322 ESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAK 381
++ +V + G I+D CAAPGGK L+ A L+G G+V A D+ + ++ ++ E
Sbjct: 166 AASIMVAEQAGIKEGDYILDVCAAPGGKALHAAQILNGTGMVEARDLTEMKVELIRENIS 225
Query: 382 LHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELK 441
+ IR + D F +S K D ++ D PCSGLGVL+K+ DL++ E E+
Sbjct: 226 RMGFEN-IRAVQQDATCFDADSEEKADVLIADLPCSGLGVLAKKTDLKYKMNPETETEVA 284
Query: 442 ILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFV 501
LQ E+LDA VKP G L+YSTC+I ENEE F +HPEF ++ + PSD
Sbjct: 285 ALQREILDAVCRYVKPEGTLMYSTCTISRTENEENAGWFAEKHPEFDLEWEKQIFPSDIT 344
Query: 502 TKHGFFFSDPIK 513
GF+ + I+
Sbjct: 345 --DGFYIAKFIR 354
>gi|241895667|ref|ZP_04782963.1| RNA methyltransferase [Weissella paramesenteroides ATCC 33313]
gi|241871034|gb|EER74785.1| RNA methyltransferase [Weissella paramesenteroides ATCC 33313]
Length = 456
Score = 182 bits (462), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 144/482 (29%), Positives = 243/482 (50%), Gaps = 46/482 (9%)
Query: 54 NLEVSPHRAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLR 113
N E++ RA+S L ++Q GA+++L + + DL ++++
Sbjct: 11 NWELTNPRALSVRVLEKVQ-NGAYSNL----------------QLDSMIKQADLSEKNVH 53
Query: 114 LVTDIVGGTIRWRRYLDH-LICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAV 171
L+T +V G I+ R L++ LI + +K +E + ++L I +++ LD +P +A+
Sbjct: 54 LMTTMVYGVIQHRLTLEYWLIPFIKQPQK----LESWVRELLYISIFQMQYLDKIPDHAI 109
Query: 172 VDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPV 231
DE + +AK G V G+L + LP E + + + + L+ S P+
Sbjct: 110 FDEAINIAKRRGHDGTRKFVTGVLHAI------QRQGLPDFE-DIKDETKRLSIKTSLPL 162
Query: 232 WMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV-PHELS 290
W++ LG + + + N+ PS S+R N R+ ++ DL+ L QV P E++
Sbjct: 163 WLIETLNGQLGWPKTVSIASTINAAPSQSVRVN-RELISPTDLIKLLENDGYQVTPSEVT 221
Query: 291 LHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKT 350
+ + V G +V + +GL +QDESA L+V +D PG ++D AAPGGKT
Sbjct: 222 ---PDALLVSGG--HVAGSQAFHDGLLTLQDESAMLMVPSLDVHPGDKVLDAAAAPGGKT 276
Query: 351 LYMASCL--SGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT----FADNST 404
+A+ L + G V A+DI+ + +++ E A QV I T D R F D +
Sbjct: 277 TQIATYLEKTQGGHVVALDIHDHKAKLIKENATRLQVADRIETQVLDARKVDEKFKDET- 335
Query: 405 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464
D++L+DAPCSG G+L ++ ++R+ + L+D +L+ +Q +LDA + +K GG LVY
Sbjct: 336 --FDRILVDAPCSGFGLLRRKPEIRYEKSLKDSYQLQKIQLSILDAVANKLKKGGRLVYG 393
Query: 465 TCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARL 524
TC+I ENE+ + FL H +F + P + D + G P DG F A L
Sbjct: 394 TCTILSTENEDVINEFLAAHNDFKLVPTKTVNNLDVLDTQGMLHVYPDDFGSDGFFIATL 453
Query: 525 VR 526
V+
Sbjct: 454 VK 455
>gi|318040449|ref|ZP_07972405.1| sun protein [Synechococcus sp. CB0101]
Length = 454
Score = 182 bits (462), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 137/426 (32%), Positives = 212/426 (49%), Gaps = 15/426 (3%)
Query: 94 GYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQI 153
G +ER LG RT L D L T++ G IR RR LD + L + P L +
Sbjct: 37 GALERELG-RTS-LSPADRGLATELAYGAIRQRRLLDAWLDQL--GKVPAERQPPKLRWL 92
Query: 154 LRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKD-NNSLPLPK 211
L IG Y+++ D +PP A V V LAK + NG+LR + ++ ++LPL
Sbjct: 93 LHIGLYQLLASDRVPPSAAVSTTVELAKRGGLARLAPVANGMLRAFLRRREAGDTLPLTP 152
Query: 212 LEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTR 271
+ D A AL S P W+ ++ E A + N+ PS LR N R T
Sbjct: 153 EQAGD--PATALGVRQSLPPWLAAELLGWVPPERAEAFGLACNTPPSLDLRVN-RLRSTP 209
Query: 272 ADLVMQLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVV 331
A++ L ++ L ++ ++G ++ + EG VQD +A + ++
Sbjct: 210 AEVCAALAAAGVEALPIEGLPAGITLQGRSG--DLSRLPGFGEGHWCVQDRAAQRIAPLL 267
Query: 332 DPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRT 391
DPQPG+ I+D CAAPGGK+ ++A + QG+V A+D + RLR ++ A+ + S I
Sbjct: 268 DPQPGERILDACAAPGGKSTHLAEWMGDQGMVLALDRGEARLRRVSRNAERLGLRS-IAV 326
Query: 392 IHADLRTFADNSTV---KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELL 448
H D A D++L+DAPCSGLG L++ AD RW + EL +LQ +LL
Sbjct: 327 QHGDATALAQEQPELQGSFDRILVDAPCSGLGTLARHADARWRIDPAAIGELVVLQRQLL 386
Query: 449 DAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFF 508
+ L+KP G +VY+TC++ P EN ++AF+ HP + + L P + F+
Sbjct: 387 EGLLPLLKPKGRMVYATCTVHPSENSALIDAFVADHPALQVQQSWQLWPGELAGAGDGFY 446
Query: 509 SDPIKH 514
+ ++H
Sbjct: 447 AAVLEH 452
>gi|392988387|ref|YP_006486980.1| Sun protein [Enterococcus hirae ATCC 9790]
gi|392335807|gb|AFM70089.1| Sun protein [Enterococcus hirae ATCC 9790]
Length = 452
Score = 182 bits (461), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 136/467 (29%), Positives = 235/467 (50%), Gaps = 52/467 (11%)
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVG 120
R ++ + L R+ GGA+++LL NEM DL+ +D+ L T++V
Sbjct: 13 RYMALITLERVNKGGAYSNLLL--------NEM--------INQGDLNQKDVGLFTELVY 56
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLA 179
GTI + L+ + L K ++ + +L + Y++ LD +P +A+++E V +A
Sbjct: 57 GTISRQLLLEFYVAPLIAKAK---KVDDWVKTLLYLSVYQLEFLDKVPAHAILNEAVEIA 113
Query: 180 KVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTK 239
K+ PG G VNG+LR + P +E R L+ S P+W+ +R T
Sbjct: 114 KIKGNPGTGKFVNGVLR------NYQRQGKPDVEQIGDPIER-LSVKISLPIWLTKRLTD 166
Query: 240 YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQ-VPHELSLHLDEFIR 298
+G EE KL + S R + RK R + L ++ +LS +
Sbjct: 167 QIGYEETEKLGLSLYQPSHVSGRVDIRK-YPREQAIETLQAEEISATASKLSPY-----G 220
Query: 299 VKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCL- 357
V ++ + L +G+ +QDES+ LV + +P ++D CAAPGGKT ++A+ L
Sbjct: 221 VIAEKGHLASSSLFHDGVMTIQDESSMLVAPAMQIEPEHHVLDACAAPGGKTTHIATFLD 280
Query: 358 -SGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKC-DKVLLDAP 415
+ G V A+D+++ +++++ E A+ V + + D R + + + D++L+DAP
Sbjct: 281 PTCGGEVTALDVHEHKVKLIEENAERLGVFTTVYAQKMDAREVKEEFSAETFDRILVDAP 340
Query: 416 CSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEE 475
CSGLG+L ++ D+R+ + ++ L ++Q +L++ + ++K G+L YSTC+I EEN+E
Sbjct: 341 CSGLGLLRRKPDIRYKKNASELANLPVIQLAILESCASVLKSSGILTYSTCTILKEENQE 400
Query: 476 RVEAFLLRHPEFS-----IDPA---------DGLVPSDFVTKHGFFF 508
+E FL RH +F +DP L P F T GFF
Sbjct: 401 VIETFLQRHTDFERIDVLVDPVLQSSIEDKMLTLYPHQFYTD-GFFI 446
>gi|33862543|ref|NP_894103.1| Sun protein (Fmu protein) [Prochlorococcus marinus str. MIT 9313]
gi|33640656|emb|CAE20445.1| Sun protein (Fmu protein) [Prochlorococcus marinus str. MIT 9313]
Length = 451
Score = 182 bits (461), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 145/448 (32%), Positives = 227/448 (50%), Gaps = 33/448 (7%)
Query: 65 AVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIR 124
A L++ GA+AD+ +ER L R + D LV ++ G IR
Sbjct: 25 AWELLQAVAAGAYADV--------------ALERAL--RQNPMSGADRGLVMELAYGAIR 68
Query: 125 WRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVAL 183
R++LD + L + P+L +L +G Y+I+++ +P A V+ +V LAK
Sbjct: 69 QRQWLDAWLDRL--GKVPACKQPPVLRWLLHLGLYQILRMQRIPAAAAVNTSVELAKTGK 126
Query: 184 RPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQ 243
+VNGILR + +D + LE D A AR LA S P+W+V + + G+
Sbjct: 127 LARLAPVVNGILRAALRARDAGMV---LLEPEDSA-AR-LAQAESLPLWLVEQLLVWRGE 181
Query: 244 EEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQ-VPHELSLHLDEFIRVKTG 302
A +N P+ LR N R+ +R + + L + ++ P E + + V
Sbjct: 182 VGAELFARASNQVPTLDLRINRRR-TSREKVRLALEAIGVESTPIE---SCPDGLMVTGS 237
Query: 303 LQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGL 362
++ Q ++G VQD S+ LV ++ PQPG I+D CAAPGGK ++ + G G
Sbjct: 238 AGDLSQWPGYQQGHWCVQDRSSQLVAPLLRPQPGDRILDACAAPGGKATHLVELMGGSGE 297
Query: 363 VYAIDINKGRL-RILNETAKLHQ--VNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGL 419
V+A+D + GRL R+ + A+L +N+++ ++L + ++L+DAPCSGL
Sbjct: 298 VWAVDRSAGRLKRLADNAARLGGDCLNALVADA-SNLLAVKPSWRGSFQRILVDAPCSGL 356
Query: 420 GVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEA 479
G L++ AD RW +E L ILQ +LL+ L+ GG LVY+TC+I P EN +++EA
Sbjct: 357 GTLARHADARWRVTPLQVEGLVILQSKLLEGLLPLLSSGGRLVYATCTIHPAENFDQIEA 416
Query: 480 FLLRHPEFSIDPADGLVPSDFVTKHGFF 507
FL RHPE S+ L P GF+
Sbjct: 417 FLGRHPELSLSQEQQLWPDPEHGGDGFY 444
>gi|300767253|ref|ZP_07077165.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
plantarum subsp. plantarum ATCC 14917]
gi|308180467|ref|YP_003924595.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
plantarum subsp. plantarum ST-III]
gi|418275217|ref|ZP_12890540.1| 16S rRNA m(5)C 967 methyltransferase [Lactobacillus plantarum
subsp. plantarum NC8]
gi|300495072|gb|EFK30228.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
plantarum subsp. plantarum ATCC 14917]
gi|308045958|gb|ADN98501.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
plantarum subsp. plantarum ST-III]
gi|376008768|gb|EHS82097.1| 16S rRNA m(5)C 967 methyltransferase [Lactobacillus plantarum
subsp. plantarum NC8]
Length = 447
Score = 182 bits (461), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 125/425 (29%), Positives = 216/425 (50%), Gaps = 25/425 (5%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDH-LICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD 165
+D RD+ L+T++V G I+ R L++ L + H + ++P + ++L Y+ LD
Sbjct: 38 MDRRDINLLTNMVYGVIQHRLTLEYWLTPFVRHPHQ----IDPWVRELLLSALYQWQYLD 93
Query: 166 -MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P AV +E + +AKV PG V G+L ++ + LP + R L+
Sbjct: 94 KIPQRAVFNETIEIAKVKGHPGIRRFVTGVLHQM------DRSGLPSFDAIKDPDER-LS 146
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQ 284
YS P+W+++ + LG E+ +++ N +LR N +N
Sbjct: 147 VTYSMPIWLIQELRRQLGAEKMERILSSLNQPAKQALRVNPALSTVEDVTTALINDGLTI 206
Query: 285 VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 344
P E+S + T Q I ++ G+ VQDESA LVV ++PQP ++D CA
Sbjct: 207 TPSEIS----PLGLIATDGQ-AINTEAMRYGMFTVQDESAQLVVPALNPQPNDRVLDACA 261
Query: 345 APGGKTLYMASCLSGQ--GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN 402
APGGKT +A+ L + G V A+DI+ +++++ + A V + D R
Sbjct: 262 APGGKTTQIAASLDAEQGGTVVALDIHANKVKLIGQNAARMHVADRVEATELDARKVETQ 321
Query: 403 STVKC-DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVL 461
+ D++L+DAPCSGLG++ ++ ++R+ ++L+D L+ +Q +L A + +K GG++
Sbjct: 322 FNAESFDRILVDAPCSGLGLMRRKPEIRYEKQLQDSLNLQRIQLAILTAVAPTLKKGGIM 381
Query: 462 VYSTCSIDPEENEERVEAFLLRHPEFSID--PADGLVPSDFVTKHGFFFSDPIKHSLDGA 519
YSTC+I +EN++ + FL HP+F + P + + +D K + D + DG
Sbjct: 382 TYSTCTILQQENQDVITKFLADHPDFELQTTPTERDLKTDRTEKTLSIYPD--DYLSDGF 439
Query: 520 FAARL 524
F A L
Sbjct: 440 FIACL 444
>gi|333897220|ref|YP_004471094.1| sun protein [Thermoanaerobacterium xylanolyticum LX-11]
gi|333112485|gb|AEF17422.1| sun protein [Thermoanaerobacterium xylanolyticum LX-11]
Length = 447
Score = 182 bits (461), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 131/444 (29%), Positives = 213/444 (47%), Gaps = 28/444 (6%)
Query: 94 GYVERTLG--FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLI--CLLCHDEKTFSSMEPL 149
GY L +L D D + +IV GTI ++ LD +I C K ++
Sbjct: 19 GYSNIVLNKYLNNNELRDIDKSFIKEIVFGTIERKQTLDQIIDHC----SSKGSKKIDNK 74
Query: 150 LLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLP 208
+L IL +G Y+I+ +D +P YA + E V LAK A VN +LR NS
Sbjct: 75 ILIILEMGLYQIIYMDKVPQYAAISEAVNLAKEYAGIHASKFVNAVLRNYA----RNSAK 130
Query: 209 LPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKG 268
+ L D+ LA YS+P W+V+R + ++ N P S+R N+ K
Sbjct: 131 IDILRS-DKNVVEYLAFKYSYPEWIVKRLLNNYDKAATEDILKSLNEKPQISIRLNTLK- 188
Query: 269 VTRADLVMQLNLLKLQVPHELSLHLDEFIR--VKTGLQNVIQAGLLKEGLCAVQDESAGL 326
+ + K+ + L+ ++ L+N+ + K G +QDE A +
Sbjct: 189 ------IGSKDFEKILIDKGLNFKKGSYVDDAYYIDLKNIAGDEIYKNGFMQIQDEGAMI 242
Query: 327 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVN 386
+ V+ P P I+D C+APGGKT +++ ++ +G V A DI++ ++ ++ K VN
Sbjct: 243 ISKVLSPNPDDLIIDVCSAPGGKTTHISQLMNNKGKVIAFDIHEHKIDLIRMNCKRLGVN 302
Query: 387 SVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRW-NRRLEDMEELKILQD 445
+V + D + K DKVL D PC+G+G++ K+ D++ N ED+++L +Q
Sbjct: 303 NVDAYVF-DSTKINEKYIEKADKVLADVPCTGIGIIRKKPDIKLKNYTDEDIKKLNNIQY 361
Query: 446 ELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDF---VT 502
+L ++S VK GG ++YSTC+I EEN ++ FL + F I L+P V
Sbjct: 362 NILSSSSKYVKKGGYILYSTCTIGREENMNIIDRFLGENKNFEISDIRPLLPDKLASQVD 421
Query: 503 KHGFFFSDPIKHSLDGAFAARLVR 526
G+ P ++ DG F +L R
Sbjct: 422 NKGYLQLLPNINNTDGFFICKLKR 445
>gi|390934823|ref|YP_006392328.1| sun protein [Thermoanaerobacterium saccharolyticum JW/SL-YS485]
gi|389570324|gb|AFK86729.1| sun protein [Thermoanaerobacterium saccharolyticum JW/SL-YS485]
Length = 447
Score = 182 bits (461), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 129/431 (29%), Positives = 218/431 (50%), Gaps = 20/431 (4%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
F + +L D D + +IV GTI ++ LD +I C K ++ +L IL +G Y+I
Sbjct: 29 FNSNELSDVDRSFIKEIVFGTIERKQTLDRIIDY-CS-TKGIKKIDNRILIILEMGLYQI 86
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
+ +D +P YA + E V LAK A VN +LR V NS + L+ D+
Sbjct: 87 IYMDKVPHYAAISEAVNLAKKYAGTYASKFVNAVLRNYV----RNSEKIDVLKS-DQNLV 141
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRK-GVTRADLVMQLN 279
LA YS+P W+V+R + ++ N P S+R N+ K G+ + + +
Sbjct: 142 EYLAFKYSYPEWIVKRLLNNYDKGVVEDILKSLNERPEISVRLNTLKVGMQKFEKI---- 197
Query: 280 LLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSI 339
L+ + + L++D+ + L+N+ + K+G +QDE A ++ + P G I
Sbjct: 198 LMDRGLNFKKGLYVDDAYYI--DLKNIADDEIYKDGFVQIQDEGAMIISKALSPNLGDLI 255
Query: 340 VDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF 399
+D C+APGGKT +++ ++ +G V A DI++ ++ ++ K VN+V + D
Sbjct: 256 IDVCSAPGGKTTHISQLMNNEGKVIAFDIHEHKIDLIKMNCKRLGVNNVDAYVF-DSTKI 314
Query: 400 ADNSTVKCDKVLLDAPCSGLGVLSKRADLRW-NRRLEDMEELKILQDELLDAASLLVKPG 458
+ K DKVL D PC+G+G++ K+ D++ + ED+++L +Q +L ++S VK G
Sbjct: 315 NEKYIDKADKVLADVPCTGIGIIRKKPDIKLKDYTEEDIKKLNNIQYSILSSSSKYVKKG 374
Query: 459 GVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDF---VTKHGFFFSDPIKHS 515
G ++YSTC+I EEN ++ FL + F I +P V G P ++
Sbjct: 375 GYILYSTCTIGKEENMNIIDKFLDENRNFEISDITPFLPEALKSQVDIKGCLQLLPNVNN 434
Query: 516 LDGAFAARLVR 526
DG F +L R
Sbjct: 435 TDGFFICKLQR 445
>gi|268593572|ref|ZP_06127793.1| ribosomal RNA small subunit methyltransferase B [Providencia
rettgeri DSM 1131]
gi|291310849|gb|EFE51302.1| ribosomal RNA small subunit methyltransferase B [Providencia
rettgeri DSM 1131]
Length = 427
Score = 182 bits (461), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 138/431 (32%), Positives = 221/431 (51%), Gaps = 48/431 (11%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
++++D+D L+ +I G +R+ L+ I L EK + + L ++ +G Y+++
Sbjct: 34 RNINDKDKALLQEICFGVLRYLPKLEWFISQLM--EKPLTGKQRTLHYLIMVGIYQLLYT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+PP+A + E V A +P L+NG+LR + L + N+ +Q
Sbjct: 92 RIPPHAALAETVDGAVALKKPQLKGLINGVLRSF----QRQQVQLEERIANNTSQ----- 142
Query: 225 TIYSHPVWMVRR-WTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLK- 282
Y HP W+++R T Y E+ ++ NN P LR NS+ LNLL+
Sbjct: 143 --YLHPSWLLKRLQTAY--PEDWQSIIEANNQRPPMWLRVNSQHHTA----AQYLNLLEQ 194
Query: 283 ------LQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPG 336
L H ++ LDE V + ++G VQD SA +++PQ G
Sbjct: 195 SEITAHLHPSHPNAIRLDEPTAVS-------RLPGFEDGWSTVQDVSAQGCAELLEPQNG 247
Query: 337 QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNET-AKLHQVNSVIRTIHAD 395
+SI+D CAAPGGKT ++ L+ + V A+DI++ RL+ + E +L Q VI+
Sbjct: 248 ESILDLCAAPGGKTTHILE-LAPRANVIAVDIDEYRLKRVKENLIRLKQHAVVIQGDGTQ 306
Query: 396 LRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLV 455
+A + + D++LLDAPCS GV+ + D++W RR D+ EL LQ ++L+A +
Sbjct: 307 PEKWAKDQ--QFDRILLDAPCSATGVIRRHPDIKWLRRDSDINELAQLQAQILEAIWPYL 364
Query: 456 KPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHS 515
KPGG L+Y+TCSI PEEN ++++ FL +H + S++ DG T G P +
Sbjct: 365 KPGGTLLYATCSIMPEENGKQIQNFLSKHNDASLN--DG-------TDAGLQVL-PSTNG 414
Query: 516 LDGAFAARLVR 526
DG F ARLV+
Sbjct: 415 GDGFFYARLVK 425
>gi|406659599|ref|ZP_11067737.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
iniae 9117]
gi|405577708|gb|EKB51856.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
iniae 9117]
Length = 440
Score = 181 bits (460), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 134/432 (31%), Positives = 218/432 (50%), Gaps = 41/432 (9%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L +D +T+IV GTI + L+ + + D ++ + +L + Y++V LD
Sbjct: 40 LSPKDKGFITEIVYGTISRKITLEWYLSHVVTDR---DKLDKWVYYLLMLSLYQLVYLDK 96
Query: 166 MPPYAVVDENVRLAKV-ALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P +A+V+E V +AK + GA VN ILR+L + LP E R Q + +
Sbjct: 97 VPKHAIVNEAVNIAKNRGNKRGAEKYVNAILRQLT------ASDLPDYETIKR-QNKRYS 149
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQ 284
YS P W+V++ G+ A+ +M S+R VT + +M++
Sbjct: 150 IKYSLPTWLVKKLMDQFGETRALAIMESLLETSKASIR------VTDENRLMEI------ 197
Query: 285 VPHELSLHLDEFIRVKTGLQ----NVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIV 340
+ +L E + GL N + G +QDES+ LV + + + I+
Sbjct: 198 ---KEALGAQESVISPLGLTKTSANFATSDYFTSGAITIQDESSQLVAPTLQIEGHEHIL 254
Query: 341 DCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR--- 397
D C+APGGKTL+MAS LS G V A+DI + +L ++ E AK + I T D R
Sbjct: 255 DACSAPGGKTLHMASYLSS-GRVTALDIYQHKLDLVKENAKRLGLTDKIETRQLDARKVN 313
Query: 398 -TFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVK 456
TF +S DK+L+DAPCSG+G++ ++ D+++N+ ++D E+L+ LQ E+L + V+
Sbjct: 314 QTFPADS---FDKILVDAPCSGIGLMRRKPDIKYNKEIQDFEQLQGLQLEILASVCQTVR 370
Query: 457 PGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSL 516
GG++ YSTC+I EEN + VE FL H F + + + K G + P ++
Sbjct: 371 KGGIITYSTCTIFDEENFQVVEKFLQSHSNFEQVKLNH--TQEDIVKDGCLYITPEQYQT 428
Query: 517 DGAFAARLVRAF 528
DG F ++ R
Sbjct: 429 DGFFISQFRRVL 440
>gi|194466505|ref|ZP_03072492.1| sun protein [Lactobacillus reuteri 100-23]
gi|194453541|gb|EDX42438.1| sun protein [Lactobacillus reuteri 100-23]
Length = 449
Score = 181 bits (460), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 129/424 (30%), Positives = 223/424 (52%), Gaps = 42/424 (9%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L D+D RL T+I+ G ++ + L++ + ++ ++P + +L Y+ L+
Sbjct: 41 LADKDRRLATNIIYGVLQHKLTLEYWLNGFVQGKR----LDPWVKTLLLSALYQYHYLER 96
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P +AV DE++ +AK PG V G+L ++ LP L + R L+
Sbjct: 97 VPDWAVTDESIEIAKRRGNPGIRKFVTGVLHAIL------RKGLPDLRQINERDLR-LSI 149
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADL-VMQLNLLKLQ 284
S P W+V T+ G+E+ K++ N +R N+ K DL ++ L
Sbjct: 150 ENSVPRWLVNELTREYGEEDTEKILQSINEPAHQVIRVNTAK----TDLPTVKQALDAAG 205
Query: 285 VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 344
+ ++ S + + G +I + L K G +QDESA L V + +PG ++D CA
Sbjct: 206 IEYQESQVAQNALVITKG--EIISSDLFKNGEITIQDESAMLAVESMHIEPGDKVLDACA 263
Query: 345 APGGKTLYMASCLSGQ-GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHA----DLRTF 399
APGGKT+ +A L+ + G V A+DI++ ++R++ + A+ V + T HA ++
Sbjct: 264 APGGKTVQIAEALADEDGHVDALDIHQHKVRLIEKNARRLGVEKRV-TAHALNAREVDQL 322
Query: 400 ADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGG 459
D+ DK+L+DAPCSG+G+L ++ ++R+ + L D ++L +Q +L+A + VK GG
Sbjct: 323 FDDENF--DKILVDAPCSGIGLLRRKPEIRYTKTLSDSKQLHKIQLAILNAVAAKVKKGG 380
Query: 460 VLVYSTCSIDPEENEERVEAFLLRHPEFSI--------------DPADGLVPSDFVTKHG 505
++ YSTC+I +EN++ V+AFL HPEF++ P ++PSDF + G
Sbjct: 381 IITYSTCTILRQENDDTVQAFLAEHPEFALVKTTTARKVKDTRHSPTLTILPSDFDSD-G 439
Query: 506 FFFS 509
FF S
Sbjct: 440 FFIS 443
>gi|196230011|ref|ZP_03128874.1| sun protein [Chthoniobacter flavus Ellin428]
gi|196225608|gb|EDY20115.1| sun protein [Chthoniobacter flavus Ellin428]
Length = 410
Score = 181 bits (460), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 129/382 (33%), Positives = 189/382 (49%), Gaps = 42/382 (10%)
Query: 146 MEPLLLQILRIGFYEIVKLDMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNN 205
++P +LR+G Y+I + P+A V+E+V AL A LVN ILR+ + K+
Sbjct: 68 IDPQTRAVLRLGLYQIFHMRTAPHAAVNESV-----ALGGRARGLVNAILRRALREKE-- 120
Query: 206 SLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANS 265
LE + A + A+ T SHP +++ RW + G E L WNN +RAN
Sbjct: 121 -----ALESDLLAASSAVRT--SHPEFLIARWEEVFGPEATRILCEWNNEPADVHVRANG 173
Query: 266 RKGVTRADLVMQLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAG 325
+ VT +L+ H L++ ++ I + GLC VQD S
Sbjct: 174 LR-VTVGELLRSSTSAMPSPVHPLAIKVEH-----------IPPSWIAMGLCYVQDPSTL 221
Query: 326 LVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQV 385
L ++ PQPG++++D CAAPGGKT Y+A + QG + A D+ R+ L E K V
Sbjct: 222 LSCDLLAPQPGETVLDACAAPGGKTTYLAQLMHDQGRIIACDLYDSRVARLRENLKRLGV 281
Query: 386 NSVIRTIHAD-LRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQ 444
++ R I D ++ D++L+DAPCS GV+ +R D+RW ED + Q
Sbjct: 282 -TIARAIRHDCMQAGPPLDPDSFDRILVDAPCSNTGVIRRRVDVRWRLTEEDFIRMPAQQ 340
Query: 445 DELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKH 504
LL + L+KPGG LVYSTCS++PEEN+ VE P + +P FV +
Sbjct: 341 LALLRRTATLLKPGGTLVYSTCSLEPEENDLLVEKVCAAIPSLRFVESRRALP--FVDR- 397
Query: 505 GFFFSDPIKHSLDGAFAARLVR 526
+DGAFAA+ VR
Sbjct: 398 -----------IDGAFAAKFVR 408
>gi|420185478|ref|ZP_14691570.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIHLM040]
gi|394254464|gb|EJD99433.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIHLM040]
Length = 435
Score = 181 bits (460), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 128/420 (30%), Positives = 221/420 (52%), Gaps = 38/420 (9%)
Query: 104 TKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTF--SSMEPLLLQILRIGFYEI 161
T +++ D L T++V GTI+ + LD+L+ K F + ++ + Q+L + Y+
Sbjct: 33 TNNINTVDKNLFTELVYGTIKRKYTLDYLL-------KPFIKTKIKSWVRQLLWMSLYQY 85
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
+ LD +P +A++ E V +AK GN+VNGILR ++ + LP E D +
Sbjct: 86 LYLDKIPNHAIIHEAVDIAKKRGGYHTGNIVNGILRTVMRTE------LPSFEDIDDIKK 139
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
R +A YS P W+V W + G E+ + + ++RAN ++R + ++
Sbjct: 140 R-IAIQYSLPKWIVDHWGTHFGVEKTENIARSFLEPVATTVRAN----ISRDSIDSIISK 194
Query: 281 LKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIV 340
L+ + H + F +G+ V+ + KEG ++QD+S+ +V V++ ++
Sbjct: 195 LEQEGYHVKKDDMLPFCLHISGMP-VVNSNAFKEGYISIQDKSSMMVAYVMNLGRDDKVL 253
Query: 341 DCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 400
D C+APGGK +MA LS +G V A DI++ ++ ++ + ++N+ I+ D
Sbjct: 254 DACSAPGGKACHMAEILSPEGHVDATDIHEHKINLIKQNITKLKLNN-IKAFQHDATEVY 312
Query: 401 DNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGV 460
D DK+L+DAPCSGLGVL + ++++++ ++ L LQ ++L+ +KPGG
Sbjct: 313 DKM---YDKILVDAPCSGLGVLRHKPEIKYSQSQNSIKSLVELQLQILENVKDNIKPGGT 369
Query: 461 LVYSTCSIDPEENEERVEAFLLRHPEFSID----PADG-------LVPSDFVTKHGFFFS 509
+VYSTC+I+ ENE + FL RH +F + PA G ++P DF GFF S
Sbjct: 370 IVYSTCTIEQMENENVIYTFLKRHKDFEFEPFQNPATGEQVKMLQILPQDF-NSDGFFIS 428
>gi|124027398|ref|YP_001012718.1| tRNA and rRNA cytosine-C5-methylase [Hyperthermus butylicus DSM
5456]
gi|123978092|gb|ABM80373.1| tRNA and rRNA cytosine-C5-methylase [Hyperthermus butylicus DSM
5456]
Length = 472
Score = 181 bits (460), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 110/311 (35%), Positives = 172/311 (55%), Gaps = 21/311 (6%)
Query: 222 ALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLN-- 279
AL Y P W++RR LG+EE+ KL N P S+R N+ K T ++V +L
Sbjct: 169 ALEWKYLLPAWLIRRMRSLLGEEESEKLFEALNKRPLISIRVNTLK-TTVEEVVEELKRE 227
Query: 280 ----LLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQP 335
++ +VP + G + ++ L +EG +Q+E++ ++DP+P
Sbjct: 228 GKNPIVSTRVPVIVKFE---------GPYDFDRSRLYREGKFVIQEEASAAASIILDPKP 278
Query: 336 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHAD 395
G ++VD AAPGGKT ++A + G +YA DI++ R++ + + + +++R D
Sbjct: 279 GMTVVDLAAAPGGKTSHIAELMKNHGRIYAFDIDRVRIKRMRMILRRMGI-TIVRIFEKD 337
Query: 396 LRTFADNSTVK-CDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLL 454
R + D+VLLDAPC+ G ++K +LRW R E +EE+ LQ E+L+AA+ L
Sbjct: 338 AREAPRILGEEIADRVLLDAPCTSTGTIAKNPELRWRVREEGLEEIVKLQREMLEAAAKL 397
Query: 455 VKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLV-PSDFVTKHGFFFSDPIK 513
VKPGG L+Y+TCS+ PEENE+ ++ FL RH EF + P +G PS + HG + P +
Sbjct: 398 VKPGGRLLYTTCSLLPEENEDNIKWFLKRHSEFKLVPLNGPYDPSPLL--HGTMRAWPHR 455
Query: 514 HSLDGAFAARL 524
H G F A L
Sbjct: 456 HDTIGFFYALL 466
>gi|302023430|ref|ZP_07248641.1| ribosomal RNA small subunit methyltransferase [Streptococcus suis
05HAS68]
Length = 444
Score = 181 bits (460), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 128/385 (33%), Positives = 200/385 (51%), Gaps = 30/385 (7%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L +D L T++V GT+ + L+ + D + ++ + +L + Y++V LD
Sbjct: 40 LSAQDKGLATELVYGTVSRKITLEWYLAHFIEDRE---KLDTWVYYLLMLSLYQLVYLDK 96
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P +AVV+E V +AK +PG VN ILRKL +SLP P + + + + L+
Sbjct: 97 LPTHAVVNEAVNIAK--RKPGTDKFVNAILRKL----SQDSLPKP---ADIKRKNKRLSV 147
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
YS PVW+V+ G E A K+ S R + VT V QL
Sbjct: 148 QYSVPVWLVQTLIAEYGDERAEKIF------QSLHDRNKASVRVTDGQQVEQL------- 194
Query: 286 PHELSLHLDEFIRVKTGLQNVIQAG--LLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCC 343
EL + V + AG K+GL +QDE++ LV + Q + I+D C
Sbjct: 195 AEELGAQHSQLSPVGLVKSHGHFAGTDYFKKGLITIQDETSQLVAPTLGIQGDEIILDAC 254
Query: 344 AAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADL-RTFADN 402
AAPGGKT +MAS L+ G VYA+D+ +L ++ E A+ + I T D R +
Sbjct: 255 AAPGGKTCHMASYLT-DGKVYALDLYDHKLNLIEENARRLGLEDKIETKGLDASRVHEEF 313
Query: 403 STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLV 462
DK+L+DAPCSG+G++ ++ D+R+N+ D + LK +Q ++LD+ +K GG++
Sbjct: 314 GPDTFDKILVDAPCSGIGLIRRKPDIRYNKASMDFDSLKTIQLQILDSVCQSLKIGGIIT 373
Query: 463 YSTCSIDPEENEERVEAFLLRHPEF 487
YSTC+I +EN+E ++ FL HP F
Sbjct: 374 YSTCTIIAKENQEVIQEFLQNHPNF 398
>gi|296121363|ref|YP_003629141.1| sun protein [Planctomyces limnophilus DSM 3776]
gi|296013703|gb|ADG66942.1| sun protein [Planctomyces limnophilus DSM 3776]
Length = 471
Score = 181 bits (460), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 143/423 (33%), Positives = 206/423 (48%), Gaps = 50/423 (11%)
Query: 88 SGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSME 147
+G+ +G V RT L D RL +++ G +R + L L+ L H + ++E
Sbjct: 33 AGNKHIGEVFDQAVDRTT-LSPSDRRLAYELICGIVRRQSTLQALLMSLVH--RQMETLE 89
Query: 148 PLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVA-LRPGAGNLVNGILRKLVLLKDNN 205
L I++IG Y+I +P +A V E V LAK A LR G VNG+LR + L N
Sbjct: 90 RPLQTIIKIGLYQIFLCQGIPQHAAVHETVELAKRANLR--WGGFVNGVLRSAIQLMTEN 147
Query: 206 SLPLPKLEG--NDRAQARALAT----------------IYSHPVWMVRRWTKYLGQEEAI 247
L P + Q R L T +S P +V RW G E I
Sbjct: 148 ILTAPSSKALPIGHHQYRELTTDLFPSPTLTPGSYIAAAFSFPHDLVERWVGQYGVEATI 207
Query: 248 KLMVWNNSDPSFSLRAN--------SRKGVTRADLVMQLNLLKLQVPHELSLHLDEFIRV 299
++ W N +LR N R+ + AD V + L E IR+
Sbjct: 208 RMAFWFNQVTETALRVNLLKTDRETFRQKLFAADFVAEAG------------DLPETIRL 255
Query: 300 KTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSG 359
+ ++ G EG +VQD SA ++PQPG+ ++D CAAPG KT +MA +
Sbjct: 256 LSTVRISTLPGF-PEGEFSVQDLSAQHAARRLNPQPGEVVLDLCAAPGSKTCHMAELMQN 314
Query: 360 QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVKCDKVLLDAPCSG 418
QG + A D + GR+R + E A+ + S+IRTI R +N +++ DKVL D PCS
Sbjct: 315 QGEIIAADTHGGRIRQVYENAERLGL-SIIRTITIGPR--GENLPSMEFDKVLADVPCSN 371
Query: 419 LGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVE 478
GVL KR + RW ++EL+ +Q +L A+ V+ GG ++YSTCSI+P ENEE V+
Sbjct: 372 TGVLGKRPEARWKYSPAHLDELREMQATILRTAAGKVRIGGRILYSTCSIEPLENEEIVQ 431
Query: 479 AFL 481
FL
Sbjct: 432 QFL 434
>gi|126695788|ref|YP_001090674.1| Sun protein (Fmu protein) [Prochlorococcus marinus str. MIT 9301]
gi|126542831|gb|ABO17073.1| Sun protein (Fmu protein) [Prochlorococcus marinus str. MIT 9301]
Length = 438
Score = 181 bits (460), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 127/426 (29%), Positives = 215/426 (50%), Gaps = 19/426 (4%)
Query: 87 GSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEK-TFSS 145
SGD +E+ L + + D+ +T++ G IR+R++LD H K T
Sbjct: 19 SSGDFSDHALEKVL--KNYQFNPLDIAFITELSFGCIRYRKFLD---LWTDHTSKITHKK 73
Query: 146 MEPLLLQILRIGFYEIVKLDMPPY-AVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDN 204
P L +L IG Y+++K+D P+ A + V +AK G VN ILR +
Sbjct: 74 QPPKLRWLLHIGLYQLLKMDKIPFPAAISTTVEVAKKTDLNGLAGTVNAILRNASRKLEQ 133
Query: 205 NSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRAN 264
P + +R ++ + S P+W+V+ K++G E ++ N PS LR N
Sbjct: 134 KIFPELSSDRKER-----ISYLESFPLWLVKDLYKWVGNSEGENIIKALNKKPSIDLRIN 188
Query: 265 SRKGVTRADLVMQLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESA 324
K T D +++ L + ++ E+ L I +K+ +++ +GL +QD S+
Sbjct: 189 KLK--TNLDNFLKV-LHENKIDAEIIKDLHNGITLKSNPRSIKNLPGYSDGLWTIQDRSS 245
Query: 325 GLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQ 384
+ +++P+ G+ I+D CAAPG K+ ++A + + A+D + RL+IL +
Sbjct: 246 QWIAPLLNPKQGEKILDACAAPGSKSTHLAELTNDSSEIIAVDRSAKRLKILQSNLERLN 305
Query: 385 VNSVIRTIHADLRTFAD---NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELK 441
+ SV T+ AD + + DK+LLDAPCSG+G LS+ D RW+ E ++ L
Sbjct: 306 LKSV-NTLKADATSLIELNPKFISYFDKILLDAPCSGIGTLSRNPDSRWSLSKEKIKSLT 364
Query: 442 ILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFV 501
+LQ++LLD+ L+K G LVYSTC+I P+EN +E F+ ++ + ++PS
Sbjct: 365 LLQEKLLDSIFPLLKKDGTLVYSTCTICPDENNLLIERFIEKNKTLKLVSEKQILPSLDY 424
Query: 502 TKHGFF 507
GF+
Sbjct: 425 PGDGFY 430
>gi|365841978|ref|ZP_09383022.1| ribosomal RNA small subunit methyltransferase B [Flavonifractor
plautii ATCC 29863]
gi|364576620|gb|EHM53936.1| ribosomal RNA small subunit methyltransferase B [Flavonifractor
plautii ATCC 29863]
Length = 436
Score = 181 bits (460), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 144/440 (32%), Positives = 225/440 (51%), Gaps = 35/440 (7%)
Query: 94 GYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQI 153
GY+++ +G LD RD L T + G ++ R LD + LC +E + +
Sbjct: 24 GYLKKAIG--GAKLDGRDAALATRLCFGVLQNRMLLDFYLSKLC--ATPLHKLEASIRNL 79
Query: 154 LRIGFYEIVKLD-MPPYAVVDENVRLA-KVALRPGAGNLVNGILRKLVLLKDNNSLPLPK 211
LR+G Y+++ L+ +P +A V E V LA K A P A LVNG+LR L+ + +L P
Sbjct: 80 LRLGAYQLLYLNRVPDHAAVSEAVSLARKKAKNPRAAGLVNGVLRSLI--RQREALEPPA 137
Query: 212 LEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTR 271
L+T YSHP W+V + LG+EEA L+ +N +P + N+ K ++
Sbjct: 138 ----------DLSTRYSHPQWLVDSFVARLGREEAEALLAADNGEPPTCAQVNTLK-ISA 186
Query: 272 ADLVMQLNLLKLQV-PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAV 330
+L L + V PH D TG ++A ++G +QD +A L V
Sbjct: 187 EELAAMLTAEGVAVEPH--PWLPDCLFLNGTGSLEHLEA--FQKGYFYIQDAAAHLAVLA 242
Query: 331 VDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIR 390
PQPG ++D CAAPGGK+ A + +G V + DI+ +LR++ A ++ +
Sbjct: 243 AAPQPGWRVLDACAAPGGKSFAAAIAMENRGSVTSCDIHPHKLRLIE--AGYQRLG--LD 298
Query: 391 TIHADLRTFADNSTV---KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDEL 447
IHA+L + D ++ D PCSGLG++ K+ D+R+ + E +E L +Q +
Sbjct: 299 IIHANLLDGKERKAELLNSFDLIIADVPCSGLGIIRKKPDIRY-KDPEPLENLPRVQAAI 357
Query: 448 LDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFV-TKHGF 506
LD + V+PGGVL+Y+TC++ ENE V AFL + +F+++ V F+ T G
Sbjct: 358 LDNVADYVRPGGVLLYATCTLLERENEGVVRAFLDKQRDFTLEGFQ--VSGPFLDTDTGM 415
Query: 507 FFSDPIKHSLDGAFAARLVR 526
P +H DG F A+L R
Sbjct: 416 LTCWPHRHGTDGFFFAKLRR 435
>gi|409386861|ref|ZP_11239205.1| Ribosomal RNA small subunit methyltransferase B [Lactococcus
raffinolactis 4877]
gi|399205948|emb|CCK20120.1| Ribosomal RNA small subunit methyltransferase B [Lactococcus
raffinolactis 4877]
Length = 437
Score = 181 bits (459), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 137/444 (30%), Positives = 217/444 (48%), Gaps = 59/444 (13%)
Query: 103 RTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIV 162
+++ L + D +LVT +V GTI + LD + + + + +L + Y+I+
Sbjct: 32 KSEHLTELDKKLVTQLVYGTISKKITLD------WYTKPYVKKTKKWVKNLLAMTVYQII 85
Query: 163 KLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQAR 221
+D +P A VDE V++AK VNG+LR RA+ R
Sbjct: 86 YMDRIPTSAAVDEAVKIAKKQGDQRLSGFVNGVLRNFT-----------------RAELR 128
Query: 222 ALATI----------YSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTR 271
+ I YS P + +++ G E+ + + + +PS RA+ R T
Sbjct: 129 SFDEISDSTEKLGIQYSMPAELTQKFVTQFGFEKT-RQIFKSLEEPS---RASLRVNTTL 184
Query: 272 ADLVMQLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLL--KEGLCAVQDESAGLVVA 329
D+ + N L + E S I K+G A LL +GL +QDES+ LV
Sbjct: 185 TDVETEFNKLSQEFDVEKSELSSTGIVAKSGHF----ADLLDFNDGLITIQDESSQLVAV 240
Query: 330 VVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETA-KLHQVNSV 388
+D QP I+D CAAPGGKT+++A LS QG + A+D+ +LR++ + A +LHQ +
Sbjct: 241 ALDAQPTDKILDACAAPGGKTVHIAEYLSEQGHIEALDLYDHKLRLIQQNAVRLHQAEKI 300
Query: 389 IRTIHADLRTFADNSTVKC-DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDEL 447
T D R + +C DK+L+DAPCSGLG++ ++ D+++ + D L+ +Q E+
Sbjct: 301 SLT-KLDARQSFEKFGAECFDKILVDAPCSGLGLIRRKPDIKYRKETTDFVNLQKVQLEI 359
Query: 448 LDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDP-----ADGLVPSDFVT 502
L+ + G +VYSTC+I EEN + +E FL +HPEF P AD +
Sbjct: 360 LENTCKTLVSSGTIVYSTCTIFDEENFQVIEKFLAKHPEFEQVPLTHEKAD-------II 412
Query: 503 KHGFFFSDPIKHSLDGAFAARLVR 526
K+G P + DG F A+L +
Sbjct: 413 KNGCIMLTPDAYHTDGFFIAKLCK 436
>gi|331086043|ref|ZP_08335126.1| ribosomal RNA small subunit methyltransferase B [Lachnospiraceae
bacterium 9_1_43BFAA]
gi|330406966|gb|EGG86471.1| ribosomal RNA small subunit methyltransferase B [Lachnospiraceae
bacterium 9_1_43BFAA]
Length = 452
Score = 181 bits (459), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 136/424 (32%), Positives = 209/424 (49%), Gaps = 17/424 (4%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
LD ++ +T +V GT+ +D++I + + + M+P++ ILR Y++ +D
Sbjct: 39 LDKKERAFITRVVEGTLERMIEIDYIINQFSNVK--VNKMKPVIRTILRSAVYQLKYMDG 96
Query: 166 MPPYAVVDENVRLA-KVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P AV +E V+LA K R G VNG+LR + ++ + + P+ E N L+
Sbjct: 97 VPDSAVCNEAVKLAEKKGFRSLKG-FVNGVLRTIA--RNMDQIRYPEKEKN---PVSWLS 150
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQ 284
YS P WMV+ W G E K++ + +R N RK ++ + L K
Sbjct: 151 IHYSIPEWMVKLWLSEYGAETVEKMLKGFLEEHPTVIRCNLRK---HSEKELTERLRKEG 207
Query: 285 VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 344
V E +L + + +G ++ ++G VQD S+ LV + PQ G ++D CA
Sbjct: 208 VKVEAHPYLS-YAKKISGYDHLGGLESFRDGAFQVQDISSMLVAEIAAPQRGDQVIDVCA 266
Query: 345 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNST 404
APGGK++++A L G G+V A D+ + ++ ++ E + IR D F +S
Sbjct: 267 APGGKSMHIADLLDGSGMVAARDLTEYKVGLIEENICRTGFQN-IRAEQKDATVFDKDSE 325
Query: 405 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464
D V+ D PCSGLGVL+K+ DL++ E E L LQ E+L VK GG LVYS
Sbjct: 326 RIADIVIADLPCSGLGVLAKKTDLKYKMTKEGTESLAKLQREILGVVKNYVKEGGALVYS 385
Query: 465 TCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFV--TKHGFFFSDPIKHSLDGAFAA 522
TC+I+P EN E V FL PEF + + + K G P H DG F A
Sbjct: 386 TCTINPAENLENVRWFLDNSPEFKAEDITPFLCGELQKDVKEGCLQLLPGVHDSDGFFIA 445
Query: 523 RLVR 526
+ R
Sbjct: 446 KFRR 449
>gi|116073315|ref|ZP_01470577.1| Fmu, rRNA SAM-dependent methyltransferase [Synechococcus sp.
RS9916]
gi|116068620|gb|EAU74372.1| Fmu, rRNA SAM-dependent methyltransferase [Synechococcus sp.
RS9916]
Length = 456
Score = 181 bits (459), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 145/427 (33%), Positives = 212/427 (49%), Gaps = 36/427 (8%)
Query: 96 VERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILR 155
+ER L R + L D LVT++ G IR RR+LD + L + P L +L
Sbjct: 46 LERAL--RGQQLSGPDRGLVTELAYGAIRQRRWLDGWLDRL--GKVPARKQPPRLRWLLH 101
Query: 156 IGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNL---VNGILRKLVLLKD-NNSLPLP 210
+G Y+++ ++ +P A V+ +V LAK R G L VNG+LR + ++ L LP
Sbjct: 102 VGLYQLLCMERIPAAAAVNTSVELAK---RHGLNRLAPVVNGLLRGALRAQEAGEQLTLP 158
Query: 211 KLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVT 270
+D A LA S P W ++ ++ G E+A ++ N PS LR N +
Sbjct: 159 ----DD--PALRLALQQSLPDWFCQQLQQWCGPEQAERVAQACNQVPSLDLRVNRLRSTP 212
Query: 271 RADLVMQLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKE------GLCAVQDESA 324
A +K + + L + GLQ + G L++ G VQD +A
Sbjct: 213 EA--------VKAAL-EDAGLTVVAIPECPDGLQVLSHGGDLRQWPGYDDGHWCVQDRAA 263
Query: 325 GLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQ 384
V ++ PQPG ++D CAAPGGK ++A + QG V+AID + GRL+ + A
Sbjct: 264 QWVAPLLAPQPGDRVLDACAAPGGKATHLAELMGDQGEVWAIDRSAGRLQRVAANAARLG 323
Query: 385 VNSV--IRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKI 442
N + + ADL T ++LLDAPCSGLG L++ AD RW + + EL
Sbjct: 324 TNCLQAMAADAADLLTLKPEWKGSFQRILLDAPCSGLGTLARHADARWRVSAKSVAELVP 383
Query: 443 LQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVT 502
LQ LL+ L+ PGG LVY+TC+I P EN ER+EAFL HP+ S+ + P D
Sbjct: 384 LQARLLEGMLPLLSPGGSLVYATCTIHPAENTERIEAFLQAHPQLSLQHQEQRWP-DPEG 442
Query: 503 KHGFFFS 509
GF+ +
Sbjct: 443 GDGFYAA 449
>gi|271502215|ref|YP_003335241.1| sun protein [Dickeya dadantii Ech586]
gi|270345770|gb|ACZ78535.1| sun protein [Dickeya dadantii Ech586]
Length = 431
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 140/425 (32%), Positives = 210/425 (49%), Gaps = 31/425 (7%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
+D+ +RD L+ +I G +R LD + L K + + +L +L +G Y+++
Sbjct: 34 RDISERDRGLLQEICFGVLRVLPQLDWYLRQLM--AKPLTGKQKVLHYLLMVGLYQLIHT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+PP+A + E V A RP L+NG+LR+ ++ +L +L+ N AR
Sbjct: 92 RIPPHAALAETVNGAVALKRPQLKGLINGVLRQFQ--REQEALQ-QRLQNNP---AR--- 142
Query: 225 TIYSHPVWMVRRWTK-YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKL 283
YSHP W+++R K Y GQ E I + NN P LR N R A L +
Sbjct: 143 --YSHPDWLLQRLKKAYPGQWEQI--IDANNQHPPMWLRVNRRHHTREAYLALLQEKGIE 198
Query: 284 QVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCC 343
PH H + IR+ T + G K G VQD SA + + PQ + I+D C
Sbjct: 199 AHPHA---HYPDAIRLSTPCAVNVLPGFEK-GFVTVQDASAQGCIHWLSPQDHEDILDLC 254
Query: 344 AAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS 403
AAPGGKT ++ + V A+D+++ RL+ + E L ++N D RT
Sbjct: 255 AAPGGKTTHILEA-APHARVLAVDVDEQRLKRVREN--LQRLNLHAEVKCGDGRTPTQWC 311
Query: 404 TVKC-DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLV 462
KC D++LLDAPCS GV+ + D++W RR D+ EL LQ+ +L+A +K GG LV
Sbjct: 312 GDKCFDRILLDAPCSATGVIRRHPDIKWLRRDSDIAELASLQNTILEAIWPRLKNGGTLV 371
Query: 463 YSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAA 522
Y+TCS+ PEEN +++ FL RH AD ++ P DG F A
Sbjct: 372 YATCSVLPEENCQQIADFLQRH-------ADAMLVDTGTPASPGIQMLPAAEDGDGFFYA 424
Query: 523 RLVRA 527
+LV++
Sbjct: 425 KLVKS 429
>gi|160939810|ref|ZP_02087157.1| hypothetical protein CLOBOL_04701 [Clostridium bolteae ATCC
BAA-613]
gi|158437244|gb|EDP15009.1| hypothetical protein CLOBOL_04701 [Clostridium bolteae ATCC
BAA-613]
Length = 455
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 130/420 (30%), Positives = 200/420 (47%), Gaps = 23/420 (5%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPY 169
D +T V GT+ + +D +I + + + M+P + +LR+ Y+I+ +D +P
Sbjct: 47 DRSFITRAVEGTLEYLIQIDEVINR--YSKTKINKMKPFIRSLLRMSVYQILYMDRVPDS 104
Query: 170 AVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSH 229
AV +E V++A G VNG+LR + K+N + P L YS
Sbjct: 105 AVCNEAVKMAVKRHFSGLKGFVNGVLRTISREKENLTFDTPSLR-------------YSI 151
Query: 230 PVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHEL 289
P WM W K G+E+A K+ D +R N + RAD L LK Q
Sbjct: 152 PEWMYAMWEKEFGKEKAEKIAASFLEDKPTWVRCN----LHRADRESILASLKAQGTSVR 207
Query: 290 SLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGK 349
L E + G + ++G VQD ++ V + P+ I+D CAAPGGK
Sbjct: 208 ELPFMESMIAIDGYDYLEGLDAFRKGWIQVQDVTSAFVGEIASPEKDSYIIDVCAAPGGK 267
Query: 350 TLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDK 409
+L++A L G G+V A D+ + ++ E V + ++T+ D ++ K D
Sbjct: 268 SLHLADKLEGTGMVEARDLTYQKTALIEENMARCGVTN-MKTLVWDALETDLSAMAKADI 326
Query: 410 VLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSID 469
V+ D PCSGLG++ ++ D+++N E +EEL LQ E+L VKPGG+L YSTC+ID
Sbjct: 327 VIADLPCSGLGIIGRKPDIKYNMTPEKLEELAGLQREILSVVWQYVKPGGLLCYSTCTID 386
Query: 470 PEENEERVEAFLLRHPEFSIDPAD--GLVPSDFVTKHGFFFSDPIKHSLDGAFAARLVRA 527
EN++ R P +D D G +P + K G+ P H DG F + RA
Sbjct: 387 RLENQDNAAWLRDRFPLVPVDLTDRFGGLPQEPSLKDGWIQFLPGVHPYDGFFISVFRRA 446
>gi|334880649|emb|CCB81412.1| putative rRNA methylase [Lactobacillus pentosus MP-10]
Length = 447
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 134/427 (31%), Positives = 219/427 (51%), Gaps = 46/427 (10%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDH-LICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD 165
+D RD+ L+T++V G I+ R L+ L + H + ++P + ++L Y+ LD
Sbjct: 38 MDRRDINLLTNMVYGVIQHRLTLEFWLKPFVRHPHQ----LDPWVRELLLSALYQWQYLD 93
Query: 166 -MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLP-LPKLEGNDRAQARAL 223
+P AV +E + +AKV PG V G+L ++ D + LP +E D L
Sbjct: 94 KIPQRAVFNETIEIAKVKGHPGIRRFVTGVLHQM----DRSGLPAFDTIEDPDER----L 145
Query: 224 ATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKL 283
+ YS PVW+++ + LG + ++ N SLR N+ T +D+ L L
Sbjct: 146 SVTYSMPVWLIQELRQQLGATKMEAIIASLNQPAKQSLRVNTALS-TVSDVTTALTNDGL 204
Query: 284 QV-PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 342
V P ++S V T Q I ++ G+ VQDESA LVV ++ QPG ++D
Sbjct: 205 TVEPSKIS----PLGLVVTDGQ-AINTEAMRYGMFTVQDESAQLVVPALNVQPGDQVLDA 259
Query: 343 CAAPGGKTLYMASCLSGQ--GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR--- 397
CAAPGGKT +A+ L G V A+DI+ ++R++ + A V + D R
Sbjct: 260 CAAPGGKTTQIAAELDADAGGEVVALDIHANKVRLIGQNAARMHVADRVAATELDARKVQ 319
Query: 398 -TFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVK 456
F D S D++L+DAPCSGLG++ ++ ++R+ ++L+D L+ +Q +L A + +K
Sbjct: 320 TQFDDES---FDRILVDAPCSGLGLMRRKPEIRYEKQLQDSLNLQKIQLAILAAVAPTLK 376
Query: 457 PGGVLVYSTCSIDPEENEERVEAFLLRHPEFSI--------------DPADGLVPSDFVT 502
GG++ YSTC+I +EN++ + FL HPEF + D + P D+++
Sbjct: 377 KGGIMTYSTCTILQQENQDVIAKFLADHPEFELQTTPTEQDLKADRTDKTLSIYPDDYLS 436
Query: 503 KHGFFFS 509
GFF +
Sbjct: 437 D-GFFIA 442
>gi|291518519|emb|CBK73740.1| ribosomal RNA small subunit methyltransferase RsmB [Butyrivibrio
fibrisolvens 16/4]
Length = 423
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 129/404 (31%), Positives = 206/404 (50%), Gaps = 27/404 (6%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L+ + + +V GT+ + LD++I + M+PL+ ++R+G YEI +D
Sbjct: 38 LEKNERAFLNRLVNGTVERKLQLDYII--DSFSKTKVKKMKPLIRTVMRLGVYEIYYMDA 95
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A +E V+LAK G VNG+LR N S KLE D L+
Sbjct: 96 VPDSATCNEYVKLAKKRGFAGLSGFVNGVLR-------NISREKGKLEFKD------LSV 142
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
YS P W+V +W+ G E+ +++ S +R N K ++R DL +L + V
Sbjct: 143 KYSMPQWIVDKWSADYGVEKTEEILAGFLSSEDLCIRVNLGK-ISREDLSERLKKQGISV 201
Query: 286 PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAA 345
++ +I L ++ + EGL VQD S+ LV Q+I+D CAA
Sbjct: 202 RICDTVVSACYISDYDSLASIPE---FNEGLFYVQDYSSQLVPYAAKISRSQNILDVCAA 258
Query: 346 PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHA-DLRTFADNST 404
PGGK L+ L+ +G V A D+ + ++ ++ E +++ ++ T D ++S
Sbjct: 259 PGGKALHCGE-LAYKGQVVARDLTEQKVSLIQEN--INRTGALNVTAQQWDATVLDEDSI 315
Query: 405 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464
K D V+ D PCSGLG++ K+ D+++N+ E + EL LQ ++LD VK GGVL YS
Sbjct: 316 RKYDTVIADLPCSGLGIIRKKPDIKYNQTEESLSELTQLQKKILDTVCQYVKDGGVLSYS 375
Query: 465 TCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFF 508
TC+I+ ENE ++E FL H EF ++ L P++ +H FF
Sbjct: 376 TCTINKSENENQIEDFLSSHKEFKVESMTQLFPNE---EHDGFF 416
>gi|260588062|ref|ZP_05853975.1| ribosomal RNA small subunit methyltransferase B [Blautia hansenii
DSM 20583]
gi|260541589|gb|EEX22158.1| ribosomal RNA small subunit methyltransferase B [Blautia hansenii
DSM 20583]
Length = 454
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 139/453 (30%), Positives = 235/453 (51%), Gaps = 29/453 (6%)
Query: 81 LNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDE 140
+NK+G+ S V R+ + + L+ ++ +T + GT+ ++ LD++ L +
Sbjct: 18 INKEGQHSH-----LVIRSTLEKYQYLEKQERAFLTRVCEGTLEYKLRLDYI--LDQYSS 70
Query: 141 KTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNL---VNGILR 196
M+P++ +ILR Y+++ +D +P AV DE V+LA+ + G NL VNG+LR
Sbjct: 71 VPVEKMKPVIREILRSSVYQLLYMDNVPDSAVCDEAVKLAR---KKGFYNLTGFVNGVLR 127
Query: 197 KLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSD 256
K+ ++ S+ P+ + L+ +YS P W+V ++ G E+ K++ ++
Sbjct: 128 KVA--REYGSIHFPEKD----QPVEYLSVLYSMPKWLVEKFLGEYGFEKTEKMLEAFLTE 181
Query: 257 PSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGL 316
++R R+ + V+ +L + +V E + +++ +K + + G
Sbjct: 182 KPTTIRI--RQHLVDKGAVLD-SLKRQKVTVEPAPYVENAYYIK-DYDYLPALEAFRMGN 237
Query: 317 CAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRIL 376
VQD S+ LV V DP+ G ++D CAAPGGKTL +A L G G + A DI++ + ++
Sbjct: 238 IQVQDVSSMLVGEVADPKEGDYVIDLCAAPGGKTLCIADKLKGTGRIDARDISRTKTDLI 297
Query: 377 NETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLED 436
E A +V+ T D S K D ++ D PCSGLGV+ K+ D+++N
Sbjct: 298 RENAIRQNFLNVVVT-EKDATQLDSESFEKADILIADVPCSGLGVIGKKTDIKYNITQNG 356
Query: 437 MEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLV 496
+ EL LQ ++L+ AS VKPGG L+YSTC+I+ EEN E V F+ +P + ++ D +
Sbjct: 357 IAELVNLQRKILEQASTYVKPGGTLIYSTCTINKEENIENVRWFVENYP-YELESIDDYL 415
Query: 497 PSDF---VTKHGFFFSDPIKHSLDGAFAARLVR 526
+ TK G+ H DG F ARL R
Sbjct: 416 CEELRSDTTKEGYLQLLSGVHDCDGFFIARLKR 448
>gi|160947101|ref|ZP_02094268.1| hypothetical protein PEPMIC_01033 [Parvimonas micra ATCC 33270]
gi|158446235|gb|EDP23230.1| ribosomal RNA small subunit methyltransferase B [Parvimonas micra
ATCC 33270]
Length = 434
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 125/424 (29%), Positives = 215/424 (50%), Gaps = 19/424 (4%)
Query: 104 TKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVK 163
TK++ D D + + +IV GT+ R YLD++I LC + P +L ILRI Y+I+
Sbjct: 27 TKNISDLDSKFLREIVYGTLENRIYLDYIIKKLC--KLRIKKFNPYILNILRISIYQIIF 84
Query: 164 LD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARA 222
+D +P +A+++E V L KV + VNG LR L++ K+E ++ A
Sbjct: 85 MDKIPEFAIINEAVNLTKVFKLKKFSSFVNGSLRNF--LRNKEDFMKIKVE----SEEEA 138
Query: 223 LATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLK 282
++ YS + +V+ G+EE IK++ + + P F++R +S + T +V L
Sbjct: 139 ISIKYSANMDIVKLLLGDYGREETIKILENSMTKPHFAIRISSFEK-TEEKVVKDLEKDG 197
Query: 283 LQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 342
++ L F+ T N+++ K G VQD + L ++ P+ ++D
Sbjct: 198 YKLKKSEISKLTYFVENPT---NILETESFKSGDFTVQDVGSILTGEILAPKENSKVLDI 254
Query: 343 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN 402
C+APGGKT ++A + G ++A DI K +L+ + E K V +V + ++ D + +
Sbjct: 255 CSAPGGKTCHLAFQMKNSGEIFANDIVKSKLKKIEENCKRLNVQNV-KLLNFDASIYKEE 313
Query: 403 STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLV 462
+ +L D CSG+GV+ ++ +++ R E ++E+ LQ ++ D A +K G +V
Sbjct: 314 YKEQFGYILCDVICSGIGVMDRKPEIKLFRSQETIDEIIELQRKIFDNAVEYLKDKGEIV 373
Query: 463 YSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAA 522
YSTCS+ ENEE V+ FL +H I + L S+ F P K +G F
Sbjct: 374 YSTCSVLKCENEENVKYFLEKHKNLKIKDVEFLGKSE-----KFIKLLPEKQKHNGFFII 428
Query: 523 RLVR 526
+ V+
Sbjct: 429 KFVK 432
>gi|315038633|ref|YP_004032201.1| rRNA methylase [Lactobacillus amylovorus GRL 1112]
gi|385817900|ref|YP_005854290.1| 16S rRNA methyltransferase B [Lactobacillus amylovorus GRL1118]
gi|312276766|gb|ADQ59406.1| rRNA methylase [Lactobacillus amylovorus GRL 1112]
gi|327183838|gb|AEA32285.1| 16S rRNA methyltransferase B [Lactobacillus amylovorus GRL1118]
Length = 442
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 141/426 (33%), Positives = 221/426 (51%), Gaps = 31/426 (7%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD 165
DL D L T IV GTI++R +L++ + L + T ++PLLL + Y+IV LD
Sbjct: 37 DLSQADQNLATKIVYGTIQYRLFLEYQLKGLVRIKLTEKYLKPLLL----MSIYQIVFLD 92
Query: 166 -MPPYAVVDENVRLAKVALRPGAGN--LVNGILRKLVLLKDNNSLPLPKLEGNDRAQARA 222
+P AV+DE +LAK + + +VNGILR + + LP + + + +
Sbjct: 93 KVPNRAVLDEANKLAKQFGKHHSSGYRVVNGILRSFI----RRGVILP----DAKDEIKY 144
Query: 223 LATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLK 282
L+ S P W+V + + G + KL+ N S+R ++ D N LK
Sbjct: 145 LSVKESMPEWLVNYFANHWGMDRTKKLLESINQPAKNSVRISAL-----CDRDQVFNQLK 199
Query: 283 LQ--VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVD-PQPGQSI 339
+ P +L +++ I G V Q+ L K G +QDE+A LV+ D + I
Sbjct: 200 TEGYEPEWSNLSVNDII---LGHGGVSQSDLFKRGKLTIQDEAASLVIESFDFDSKEEHI 256
Query: 340 VDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF 399
+D C+APGGKT+ MA + G V A+DI++ +L ++ E AK V + ++ D R
Sbjct: 257 LDACSAPGGKTVQMAERVV-VGDVTALDIHEKKLHLVKENAKRMNVANKVKIKACDARKV 315
Query: 400 AD-NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPG 458
D + K+L+DAPCSGLG+L ++ ++R+ + D++ L+ +Q +L++ S L+K
Sbjct: 316 QDVFKPGEFTKILVDAPCSGLGLLRRKPEIRYTKTERDLQNLQKIQLAILESVSPLLKED 375
Query: 459 GVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDG 518
G LVYSTCSI EE+E VE FL HP+F + P S +K G P + + DG
Sbjct: 376 GELVYSTCSISVEEDEAVVEKFLKLHPDFELKP---FKLSKLESKTGMLKIMPDQDNNDG 432
Query: 519 AFAARL 524
F A+
Sbjct: 433 FFIAKF 438
>gi|386743663|ref|YP_006216842.1| 16S rRNA methyltransferase B [Providencia stuartii MRSN 2154]
gi|384480356|gb|AFH94151.1| 16S rRNA methyltransferase B [Providencia stuartii MRSN 2154]
Length = 428
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 130/418 (31%), Positives = 216/418 (51%), Gaps = 33/418 (7%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
K+++++D L+ +I G +R+ L+ + L EK + + L ++ +G Y+++
Sbjct: 34 KNINEKDKSLLQEICFGVLRYLPKLEWFVAQLM--EKPLTGKQRTLHYLIMVGIYQLLYT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+PP+A + E V A RP L+NG+LR L + N+ +Q
Sbjct: 92 RIPPHAALAETVNGAVALKRPQLKGLINGVLRSF----QRQQTQLEERNTNNSSQ----- 142
Query: 225 TIYSHPVWMVRRWTK-YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKL 283
Y HP W+++R Y + + I + NN P LR NS+ Q L +
Sbjct: 143 --YLHPSWLLKRLQNAYPDKWQTI--IDANNQRPPMWLRVNSQHHTAEQ---YQKYLEEN 195
Query: 284 QVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCC 343
++ EL H I++ +V + +EG VQD SA +++PQ ++I+D C
Sbjct: 196 EIASELHPHHPCAIKLSEPT-SVTRLPGFEEGWATVQDVSAQGCAELLEPQNHETILDLC 254
Query: 344 AAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNET-AKLHQVNSVIRTIHADLRTFADN 402
AAPGGKT ++ L+ + V A+DI++ RL+ + E +L Q +VI+ +A+
Sbjct: 255 AAPGGKTTHILE-LAPKAHVVAVDIDEHRLKRVKENLQRLQQQAAVIQGDGTKPEEWANG 313
Query: 403 STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLV 462
D++LLDAPCS GV+ + D++W RR D+ EL LQ ++L++ +K GG LV
Sbjct: 314 QLF--DRILLDAPCSATGVIRRHPDIKWLRRDSDINELTELQAKILESIWPYLKVGGTLV 371
Query: 463 YSTCSIDPEENEERVEAFLLRHPEFSIDPADG------LVPSDFVTKHGFFFSDPIKH 514
Y+TCSI PEEN +++ FL +HPE S++ DG ++PS GFF++ +K
Sbjct: 372 YATCSIMPEENSLQIKNFLAKHPEASLN--DGTTAGLQILPS-ITGGDGFFYARLVKQ 426
>gi|325261900|ref|ZP_08128638.1| ribosomal RNA small subunit methyltransferase B [Clostridium sp.
D5]
gi|324033354|gb|EGB94631.1| ribosomal RNA small subunit methyltransferase B [Clostridium sp.
D5]
Length = 451
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 135/425 (31%), Positives = 214/425 (50%), Gaps = 25/425 (5%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
LD ++ +T + GT+ LD+++ + M+P++ ILR Y++ +D
Sbjct: 39 LDKKERAFITRVTEGTLEHLMELDYILGQF--SKVKVKKMKPVIRNILRSAVYQLKYMDS 96
Query: 166 MPPYAVVDENVRLAKVALRPGAGNL---VNGILRKLVLLKDNNSLPLPKLEGNDRAQARA 222
+P AV +E V+LA ++ G G+L VNG+LR + D P L A
Sbjct: 97 VPDSAVCNEAVKLA---VKKGFGSLRGFVNGVLRNVARGLDTVEYPKDALA--------A 145
Query: 223 LATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLK 282
L+ YS P W++++W +E ++ + ++R N + + ++ L
Sbjct: 146 LSVRYSMPEWILKKWLTEYDRETVETMLADFQKEKPVTIRCNINRCLPEE---LEARLES 202
Query: 283 LQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 342
V L+L R+ TG + +EGL AVQD S+ LV + DP+ G I+D
Sbjct: 203 EGVKAVRHLYLPYAYRI-TGYDYLGDMESFREGLFAVQDVSSMLVGEIADPKQGDYIIDV 261
Query: 343 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN 402
CAAPGGK++++A LSG G V A D+ + + ++ + Q+ + I + D
Sbjct: 262 CAAPGGKSIHLADRLSGTGHVDARDLTEYKTSLIRDNIDRMQMKN-ISAVQMDASVLDAA 320
Query: 403 STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLV 462
S K D V+ D PCSGLGVL ++ DL++ + EEL +LQ ++LD VKPGGVL+
Sbjct: 321 SVEKADIVIADLPCSGLGVLGRKTDLKYRTTEKQTEELVLLQRKILDVVCSYVKPGGVLL 380
Query: 463 YSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPS---DFVTKHGFFFSDPIKHSLDGA 519
YSTC+I+ EN+E V+ FL HP+F+ + + + + D V G P H DG
Sbjct: 381 YSTCTINRAENQENVKWFLETHPDFAPEQLEDRLCTELQDDVRDSGCLQLLPGVHDSDGF 440
Query: 520 FAARL 524
F AR
Sbjct: 441 FIARF 445
>gi|148544395|ref|YP_001271765.1| sun protein [Lactobacillus reuteri DSM 20016]
gi|184153759|ref|YP_001842100.1| rRNA methylase [Lactobacillus reuteri JCM 1112]
gi|227363180|ref|ZP_03847314.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus reuteri
MM2-3]
gi|325682715|ref|ZP_08162231.1| RNA methyltransferase Sun [Lactobacillus reuteri MM4-1A]
gi|148531429|gb|ABQ83428.1| sun protein [Lactobacillus reuteri DSM 20016]
gi|183225103|dbj|BAG25620.1| rRNA methylase [Lactobacillus reuteri JCM 1112]
gi|227071786|gb|EEI10075.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus reuteri
MM2-3]
gi|324977065|gb|EGC14016.1| RNA methyltransferase Sun [Lactobacillus reuteri MM4-1A]
Length = 449
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 132/425 (31%), Positives = 221/425 (52%), Gaps = 44/425 (10%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L D+D RL T+I+ G ++ + L++ + ++ ++P + +L Y+ L+
Sbjct: 41 LADKDRRLATNIIYGVLQHKLTLEYWLNGFIQGKR----LDPWVKTLLLSALYQYHYLER 96
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P +AV DE++ +AK PG V G+L ++ LP L + R L+
Sbjct: 97 VPDWAVTDESIEIAKRRGNPGIRKFVTGVLHAIL------RKGLPDLRQINERDLR-LSI 149
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADL-VMQLNLLKLQ 284
S P W+V T G+E+ K++ N +R N+ K DL ++ L
Sbjct: 150 ENSVPRWLVNELTGEYGEEDTEKILQSINEPAHQVIRVNTAK----TDLPTVKQTLDAAG 205
Query: 285 VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 344
+ ++ + + G +I + L K G +QDESA L V + +PG ++D CA
Sbjct: 206 IEYQEGQVAQNALVITKG--EIISSDLFKNGEITIQDESAMLAVESMHIEPGDKVLDACA 263
Query: 345 APGGKTLYMASCLSGQ-GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHA-DLRT---- 398
APGGKT+ +A L+ + G V A+DI++ ++R++ + A+ V + T HA D R
Sbjct: 264 APGGKTVQIAETLADEDGHVDALDIHQHKVRLIEKNARRLGVEKRV-TAHALDAREVDQL 322
Query: 399 FADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPG 458
F D S DK+L+DAPCSG+G+L ++ ++R+ + L D ++L +Q +L+A + VK G
Sbjct: 323 FDDES---FDKILVDAPCSGIGLLRRKPEIRYTKTLNDSKQLHKIQLAILNAVAAKVKKG 379
Query: 459 GVLVYSTCSIDPEENEERVEAFLLRHPEFSI--------------DPADGLVPSDFVTKH 504
G++ YSTC+I +EN++ V+AFL HPEF + P ++PSDF +
Sbjct: 380 GIITYSTCTILRQENDDTVQAFLAEHPEFELVKTTTARKVKDNRHSPTLTILPSDFDSD- 438
Query: 505 GFFFS 509
GFF S
Sbjct: 439 GFFIS 443
>gi|357053205|ref|ZP_09114305.1| ribosomal RNA small subunit methyltransferase B [Clostridium
clostridioforme 2_1_49FAA]
gi|355385972|gb|EHG33016.1| ribosomal RNA small subunit methyltransferase B [Clostridium
clostridioforme 2_1_49FAA]
Length = 455
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 132/424 (31%), Positives = 200/424 (47%), Gaps = 23/424 (5%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L D +T V GT+ + +D +I + + M+P + +LR+ Y+I+ +D
Sbjct: 43 LGKADRSFITRAVEGTLEYLIQIDEVINR--YSKTKIYKMKPFIRSLLRMSVYQILYMDR 100
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P AV +E V+LA G VNG+LR + K+ + P L
Sbjct: 101 VPDSAVCNEAVKLAVKRHFSGLKGFVNGVLRTISREKEKLTFDTPSLR------------ 148
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
YS P WM W K G+E+A K+ D +R N + RAD L LK Q
Sbjct: 149 -YSIPEWMYAMWEKEFGKEKAGKIAASFLEDKPTWVRCN----LHRADRERILASLKAQG 203
Query: 286 PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAA 345
L E + G + ++G VQD ++ V + P+ G I+D CAA
Sbjct: 204 TLVRELPFMESMIAIDGYDYLEGLDAFRKGWIQVQDVTSAFVGEIASPEKGSYIIDVCAA 263
Query: 346 PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTV 405
PGGK+L++A L G G+V A D+ + ++ E V + ++T+ D ++
Sbjct: 264 PGGKSLHLADKLRGTGMVEARDLTYQKTALIEENMARCGVTN-MKTLVWDALEPDPSAAG 322
Query: 406 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465
K D V+ D PCSGLG++ ++ D+++N E +EEL LQ E+L VKPGG+L YST
Sbjct: 323 KADIVIADLPCSGLGIIGRKPDIKYNITPEKLEELAGLQREILSVVWQYVKPGGLLCYST 382
Query: 466 CSIDPEENEERVEAFLLRHPEFSIDPAD--GLVPSDFVTKHGFFFSDPIKHSLDGAFAAR 523
C+ID EN++ R P +D D G +P + K G+ P H DG F +
Sbjct: 383 CTIDRLENQDNAAWLRERFPLVPVDLTDRFGGLPQESSLKEGWIQFLPGVHPYDGFFISV 442
Query: 524 LVRA 527
RA
Sbjct: 443 FRRA 446
>gi|240147074|ref|ZP_04745675.1| ribosomal RNA small subunit methyltransferase B [Roseburia
intestinalis L1-82]
gi|257200759|gb|EEU99043.1| ribosomal RNA small subunit methyltransferase B [Roseburia
intestinalis L1-82]
Length = 446
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 123/405 (30%), Positives = 206/405 (50%), Gaps = 19/405 (4%)
Query: 114 LVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVV 172
+T +V GTI+ LD++I + ++ ILR+G Y+I +D +P A
Sbjct: 46 FLTRLVEGTIQHMIELDYVIDQFSKVKVKKMKP--VIRNILRMGVYQIQYMDSVPDSAAC 103
Query: 173 DENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVW 232
+E V+LA+ + VNG+LR + +++ S+ P E + AL+ YS P W
Sbjct: 104 NEAVKLARKSGFSTLSGFVNGVLRNIA--RNSGSIRYPDEE---KEPVLALSVRYSMPEW 158
Query: 233 MVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL--LKLQVPHELS 290
+V W G E+ ++ + + ++R N K +T L QL + +Q ELS
Sbjct: 159 IVEEWLNAYGMEQTKAILDAFSKETPITIRTNVTK-ITPDALKEQLKAEGVTVQTLEELS 217
Query: 291 L----HLD--EFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 344
+ D + +G +++ ++GL VQD S+ +V P+ G ++D CA
Sbjct: 218 YAGLPYTDAYHYAFAISGFDHLMALPSFQDGLFYVQDISSMMVAEAAAPEKGAHVIDVCA 277
Query: 345 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNST 404
APGGK++++A L G G V + D+ + ++ E +Q+ ++ + D +++
Sbjct: 278 APGGKSIHLAEMLDGTGSVESRDLTGYKTGLIEENISRYQIKNMTTKVW-DATVPDESAE 336
Query: 405 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464
D ++ D PCSGLGVL K+ D+R+ EEL+ LQ +LD VK G++VYS
Sbjct: 337 DTADVLVADLPCSGLGVLRKKTDIRYKMSRGQQEELEALQRRILDTVCSYVKKDGIMVYS 396
Query: 465 TCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFS 509
TC+I+P EN+E V FL +HPEF + + + P V GFF++
Sbjct: 397 TCTINPGENQENVAWFLGKHPEFELLDMEQIYPGTQV-GDGFFYA 440
>gi|385813567|ref|YP_005849960.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus helveticus
H10]
gi|323466286|gb|ADX69973.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus helveticus
H10]
Length = 448
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 147/471 (31%), Positives = 239/471 (50%), Gaps = 47/471 (9%)
Query: 61 RAVSAVRLMRIQFGGAFADL-LNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIV 119
RA+S L+++ G+++++ LN K S DL D L T IV
Sbjct: 14 RAISLETLIKVLQNGSYSNISLNNSLKHS-----------------DLSIADQNLATRIV 56
Query: 120 GGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRL 178
GTI++R + ++ + L + T ++PLLL + Y+I+ LD +P AV+DE +L
Sbjct: 57 YGTIQYRLFFEYQLTGLLKTKITEKYLKPLLL----MSLYQIIFLDKVPNRAVLDEANKL 112
Query: 179 AKVALRPGAGN--LVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRR 236
AK + + +VNGILR + + LP +++ + L+ S P W+V+
Sbjct: 113 AKQFGKHHSSGYRVVNGILRAFI----RRGVILP----DEKDTIKYLSIKESVPEWLVKY 164
Query: 237 WTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEF 296
G ++A ++ N S+R +S R + QL Q P +L L++
Sbjct: 165 LIDNWGMQKAQSVLSSINDPAKNSVRISSL--ADRNKVFDQLKKEGYQ-PEWSNLSLNDA 221
Query: 297 IRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQS--IVDCCAAPGGKTLYMA 354
+ G+ ++ L ++G +QDE+A LVV D Q+ ++D C+APGGKT+ +A
Sbjct: 222 VLSHGGIS---ESDLFEQGKLTIQDEAASLVVEAFDFDQNQTEHVLDACSAPGGKTVQIA 278
Query: 355 SCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTV-KCDKVLLD 413
+ G V A+DI++ +LR++ E A+ V + T D R + + K+L+D
Sbjct: 279 ENIHGD--VTALDIHEKKLRLVKENARRMHVLDKVTTKACDARKAHEIFKAGEFTKILVD 336
Query: 414 APCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEEN 473
APCSGLG+L ++ ++R+ + L+D+ L+ +Q +LD+ S L+K G LVYSTCSI EEN
Sbjct: 337 APCSGLGLLRRKPEIRYTKSLQDLRNLQKIQLTILDSISKLLKAEGELVYSTCSISMEEN 396
Query: 474 EERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARL 524
EE V+ L HP F + P S +K G P + DG F A+
Sbjct: 397 EEVVKQLLRIHPGFELKP---FSLSKLESKTGMLKIMPDQDGNDGFFIAKF 444
>gi|254526482|ref|ZP_05138534.1| ribosomal RNA small subunit methyltransferase B [Prochlorococcus
marinus str. MIT 9202]
gi|221537906|gb|EEE40359.1| ribosomal RNA small subunit methyltransferase B [Prochlorococcus
marinus str. MIT 9202]
Length = 438
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 126/426 (29%), Positives = 214/426 (50%), Gaps = 19/426 (4%)
Query: 87 GSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEK-TFSS 145
SGD +E+ L + + D+ +T++ G IR+R++LD H K T
Sbjct: 19 SSGDFSDHALEKVL--KNYQFNPLDIAFITELSFGCIRYRKFLD---LWTDHTSKITHKK 73
Query: 146 MEPLLLQILRIGFYEIVKLDMPPY-AVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDN 204
P L +L IG Y+++K+D P+ A + V +AK G VN ILR +
Sbjct: 74 QPPKLRWLLHIGLYQLLKMDKIPFSAAISTTVEVAKKTDLNGLAGTVNAILRNASRKLEQ 133
Query: 205 NSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRAN 264
P + +R ++ + S P+W+V+ K++G E ++ N PS LR N
Sbjct: 134 KIFPELSSDRKER-----ISYLESFPLWLVKDLYKWVGNSEGENIIKAFNKKPSIDLRIN 188
Query: 265 SRKGVTRADLVMQLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESA 324
K T D +++ L K + E+ L I +K+ +++ +GL +QD S+
Sbjct: 189 QLK--TNLDNFLKV-LHKNNIDAEIIKDLHNGITLKSNPRSIKNLPGYSDGLWTIQDRSS 245
Query: 325 GLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILN---ETAK 381
+ +++P+ G+ I+D CAAPG K+ ++A + + A+D + RL+IL E
Sbjct: 246 QWIAPLLNPKEGEKILDACAAPGSKSTHLAELTNDSAEILAVDRSAKRLKILQSNLERLN 305
Query: 382 LHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELK 441
L VN+ ++T L N DK+L+DAPCSG+G LS+ D RW+ E ++ L
Sbjct: 306 LKSVNT-LKTDATSLIELNPNFISYFDKILIDAPCSGIGTLSRNPDSRWSLSKEKIKSLT 364
Query: 442 ILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFV 501
+LQ++LL++ L+K G LVYSTC+I P++N ++ F+ ++ + ++PS
Sbjct: 365 LLQEKLLESIFPLLKKDGTLVYSTCTICPDDNNLLIKRFIEKNKTLKLVSQKQILPSLDY 424
Query: 502 TKHGFF 507
GF+
Sbjct: 425 PGDGFY 430
>gi|70726699|ref|YP_253613.1| hypothetical protein SH1698 [Staphylococcus haemolyticus JCSC1435]
gi|68447423|dbj|BAE05007.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
Length = 435
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 128/420 (30%), Positives = 214/420 (50%), Gaps = 38/420 (9%)
Query: 104 TKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVK 163
T D+ D D L T++V GT++ + LD + + ++ + Q+L + Y+ +
Sbjct: 33 TGDVSDIDKPLYTELVYGTVKRKMTLDFYLRPFVK-----TKIKSWVRQLLWMSLYQYIY 87
Query: 164 LD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARA 222
LD +P +A+++E V +AK P GN+VN ILR + + LP LE + R
Sbjct: 88 LDKVPNHAIINEAVNIAKHRGGPHNGNVVNAILRTIFRSE------LPSLESIKNDKQR- 140
Query: 223 LATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLK 282
+A YS P W++ W + G E K+ + ++R N+ K D+V L
Sbjct: 141 MAVEYSIPKWIIEHWITHYGVETTRKMASSFFDQTAGTVRVNTSKNKVE-DVVSSLQSEG 199
Query: 283 LQVPHELSLHLDEFIRVKTGLQN--VIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIV 340
+V +DE I L+ +I++ K G ++QD+S+ V ++ + I+
Sbjct: 200 YEV------EVDELIPYCLHLKGHPIIESSNFKNGNISIQDKSSMFVGYLMGVEENDVIL 253
Query: 341 DCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 400
D C+APGGK ++A L+ G V A DI+K ++ ++ E Q+N++ H + +
Sbjct: 254 DACSAPGGKACHIAELLAPSGHVDATDIHKHKIGLIKENIVKLQLNNIKAFDHDATKPYK 313
Query: 401 DNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGV 460
D DK+L+DAPCSGLGVL + ++++ + +D+++L LQ E+LD +KPGG
Sbjct: 314 D----VYDKILVDAPCSGLGVLRHKPEIKYVQTQQDIQDLVELQLEILDNVKDNLKPGGT 369
Query: 461 LVYSTCSIDPEENEERVEAFLLRHPEFSID----PADG-------LVPSDFVTKHGFFFS 509
LVYSTC+I+ ENE + FL + +F + P G ++P DF GFF +
Sbjct: 370 LVYSTCTIEQLENENVIYTFLKNNKDFEFELMTHPVTGEQVKTIQILPQDF-NSDGFFIT 428
>gi|326803898|ref|YP_004321716.1| ribosomal RNA small subunit methyltransferase B [Aerococcus urinae
ACS-120-V-Col10a]
gi|326650964|gb|AEA01147.1| ribosomal RNA small subunit methyltransferase B [Aerococcus urinae
ACS-120-V-Col10a]
Length = 470
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 122/388 (31%), Positives = 198/388 (51%), Gaps = 18/388 (4%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
++D D L T +V G++++ L L+ + K + + LL +L + Y+ LD
Sbjct: 54 VEDSDRDLYTRLVYGSLQFHWTLQELLKQVL---KLYKRTKKWLLALLELSAYQHYYLDA 110
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P +A+VDE VR+AK G NG LR L P +E QA A
Sbjct: 111 VPDHAIVDEAVRIAKKRGNQTMGRFTNGTLRNLFRT-------YPTIEDFISQQAGDQAY 163
Query: 226 IYSHPVWMVRRWTKYLGQE---EAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLK 282
+ S + W KY Q E + + +P+ SR D + Q +L
Sbjct: 164 VLSLETSLPLDWVKYFTQRFGFETTQQIAQAMVEPAQVNVRISRDYWQDQDKISQ-SLAD 222
Query: 283 LQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 342
P++ S ++VKTG N Q+ L ++G+ +QDE+A L V +++P+ G ++D
Sbjct: 223 QGFPNQSSQIAPHQLKVKTG--NPAQSELFEKGVITIQDEAASLAVDILNPKAGDRVLDA 280
Query: 343 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN 402
CAAPGGKT+ +A + G V A DI + +L ++ + K V+S + D +
Sbjct: 281 CAAPGGKTVQLAEYVGKTGQVLAFDIAENKLPLIADNVKRMHVDSQVSIQQGDASQLGEK 340
Query: 403 STVKC-DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVL 461
+ D +L+DAPCSG+G+ ++ D + N+ +D++ L+ +Q E+L+ S L+K G L
Sbjct: 341 FPAESFDGILVDAPCSGVGLFRRKPDTKLNKDFQDLKNLQKIQLEILNNVSPLLKKAGRL 400
Query: 462 VYSTCSIDPEENEERVEAFLLRHPEFSI 489
VYSTC+I EEN + VE FL HP+F++
Sbjct: 401 VYSTCTITAEENWQVVEKFLATHPDFAL 428
>gi|325957114|ref|YP_004292526.1| 16S rRNA methyltransferase B [Lactobacillus acidophilus 30SC]
gi|325333679|gb|ADZ07587.1| 16S rRNA methyltransferase B [Lactobacillus acidophilus 30SC]
Length = 442
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 140/426 (32%), Positives = 221/426 (51%), Gaps = 31/426 (7%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD 165
DL D L T +V GTI++R +L++ + L + T ++PLLL + Y+IV LD
Sbjct: 37 DLSQADQNLATKVVYGTIQYRLFLEYQLKGLVRIKLTEKYLKPLLL----MSIYQIVFLD 92
Query: 166 -MPPYAVVDENVRLAKVALRPGAGN--LVNGILRKLVLLKDNNSLPLPKLEGNDRAQARA 222
+P AV+DE +LAK + + +VNGILR + + LP + + + +
Sbjct: 93 KVPNRAVLDEANKLAKQFGKHHSSGYRVVNGILRSFI----RRGVILP----DAKDEIKY 144
Query: 223 LATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLK 282
L+ S P W+V + + G + KL+ N S+R ++ D N LK
Sbjct: 145 LSVKESMPEWLVNYFANHWGMDRTKKLLESINQSAKNSVRISAL-----CDRDQVFNQLK 199
Query: 283 LQ--VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVD-PQPGQSI 339
+ P +L +++ I G V Q+ L K G +QDE+A LV+ D + I
Sbjct: 200 TEGYEPEWSNLSVNDII---LGHGGVSQSDLFKRGKLTIQDEAASLVIESFDFDSKEEHI 256
Query: 340 VDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF 399
+D C+APGGKT+ MA + G V A+DI++ +L ++ E AK V + ++ D R
Sbjct: 257 LDACSAPGGKTVQMAERVV-VGDVTALDIHEKKLHLVKENAKRMNVANKVKIKACDARKV 315
Query: 400 AD-NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPG 458
D + K+L+DAPCSGLG+L ++ ++R+ + D++ L+ +Q +L++ S L+K
Sbjct: 316 QDVFKPGEFTKILVDAPCSGLGLLRRKPEIRYTKTERDLQNLQKIQLAILESVSPLLKED 375
Query: 459 GVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDG 518
G LVYSTCSI EE+E VE FL HP+F + P S +K G P + + DG
Sbjct: 376 GELVYSTCSISVEEDEAVVEKFLKLHPDFELKP---FKLSKLESKTGMLKIMPDQDNNDG 432
Query: 519 AFAARL 524
F A+
Sbjct: 433 FFIAKF 438
>gi|331701497|ref|YP_004398456.1| sun protein [Lactobacillus buchneri NRRL B-30929]
gi|329128840|gb|AEB73393.1| sun protein [Lactobacillus buchneri NRRL B-30929]
Length = 443
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 137/426 (32%), Positives = 216/426 (50%), Gaps = 36/426 (8%)
Query: 111 DLRLVTDIVGGTIRWRRYLDH-LICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPP 168
D L T+IV G I+ R L++ L L EKT E + ++L Y++ LD +P
Sbjct: 42 DKGLFTNIVYGVIQHRLTLEYQLRPFLREPEKT----EAWVKELLYTAMYQLEYLDRVPK 97
Query: 169 YAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYS 228
A+ DE +++AK G V GIL ++ + +P L+ + R L+ YS
Sbjct: 98 RAIFDETIKIAKQMGHDGTRRFVTGILHQM------DRQGMPNLDDIQDEKTR-LSIEYS 150
Query: 229 HPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHE 288
P W+V + LG+ + ++ N P S+RAN K +++ DL+ +L K E
Sbjct: 151 VPTWLVEMLDEQLGKPKTASILASLNKAPKQSVRANLAK-ISQKDLLA--DLAKDGYDAE 207
Query: 289 LSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGG 348
S E I + G +I + +GL +QDESA L V + P +++D C+APGG
Sbjct: 208 PSQVSSEGIIINDG--QIIHSDFFTDGLLTIQDESAMLPVESMQISPDNNVLDACSAPGG 265
Query: 349 KTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT----FADNST 404
KT +AS L G V+A+DI+K +L+ + A V + T D R F D
Sbjct: 266 KTTQIASRLKA-GKVFALDIHKNKLKTVQRNATRLGVYKQVETFELDARKVDTKFEDGL- 323
Query: 405 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464
D +L+DAPCSGLG+L ++ ++R+++ + D+ L +Q ++L+A S VK GG + YS
Sbjct: 324 --FDSILVDAPCSGLGLLRRKPEIRYDKTIADINRLSEIQLQILNAVSAKVKTGGTITYS 381
Query: 465 TCSIDPEENEERVEAFLLRHPEFSI---DPADGLVP-SDFVTKHGFFFSDPIKHSLDGAF 520
TC+I +EN++ + F+ +P F I A+ L P S V + P + DG F
Sbjct: 382 TCTIVKQENQDVIAKFISENPNFEITKTKTANHLNPDSKMVQIY------PDDYDSDGFF 435
Query: 521 AARLVR 526
L+R
Sbjct: 436 VCSLIR 441
>gi|451947127|ref|YP_007467722.1| ribosomal RNA small subunit methyltransferase RsmB [Desulfocapsa
sulfexigens DSM 10523]
gi|451906475|gb|AGF78069.1| ribosomal RNA small subunit methyltransferase RsmB [Desulfocapsa
sulfexigens DSM 10523]
Length = 460
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 134/438 (30%), Positives = 215/438 (49%), Gaps = 46/438 (10%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L++ D +L +++ G +R R LD ++ LC + P +LQ LR+G ++I+ LD
Sbjct: 40 LENNDRQLAANLIFGLLRNRESLDIMLQYLC--RQPLKKFHPFVLQALRVGLFQIMYLDR 97
Query: 166 MPPYAVVDENVR-LAKVALRPGAGNLVNGILR-------KLVLLKDNNSLPLPKLEGNDR 217
+P A V+E+V+ L + L VNG+LR +L+ L +N + P
Sbjct: 98 IPESAAVNESVKALQAMHLPKRLHGFVNGVLRNAIRKREELLSLTENPASP--------- 148
Query: 218 AQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQ 277
I +HP W+ + W K G+ E +++ NN + SL+ NS VT D
Sbjct: 149 --------ILNHPEWLTKSWEKRYGRLETLRICRQNNDQAALSLQINS--CVTDRD---- 194
Query: 278 LNLLKLQVPHELSLHLDEFIRVKTGLQN----VIQAGLLKEGLCAVQDESAGLVVAVVDP 333
K+ + ++ H ++ L++ V + EG +QD+ A L+ +V P
Sbjct: 195 -TFGKILSQNGINSHSGKYCYNTLILEDFNGTVHEIPGFTEGHFQIQDQGAQLLAHLVGP 253
Query: 334 QPGQ-SIVDCCAAPGGKT-LYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRT 391
+ +D CA GGKT + + + V A + +KGR E K + I
Sbjct: 254 MTDKGEYLDACAGVGGKTSVLIQMAKTPMASVAAAEPDKGRRTRFTENMKRLHPDLDIPL 313
Query: 392 IHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAA 451
L+ A ++ + +LLDAPCSG GV+ + D+RWNRR ED+ + +Q ELL A
Sbjct: 314 FSGTLQELATITSKRFHGILLDAPCSGTGVIRRHPDIRWNRRPEDLNRYQEIQLELLQAG 373
Query: 452 SLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPS---DFVTKHGFFF 508
+ L+ PGG LVY+TCS+ EENE+ +E FL + +F ++ +PS K+ FF
Sbjct: 374 TTLLLPGGTLVYATCSLQEEENEQVIERFLAANTDFILEECSASLPSKAHSLCNKN--FF 431
Query: 509 SDPIKHSLDGAFAARLVR 526
+ + +DG F ARL R
Sbjct: 432 APLPGNEIDGFFGARLKR 449
>gi|332653342|ref|ZP_08419087.1| ribosomal RNA small subunit methyltransferase B [Ruminococcaceae
bacterium D16]
gi|332518488|gb|EGJ48091.1| ribosomal RNA small subunit methyltransferase B [Ruminococcaceae
bacterium D16]
Length = 445
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 136/420 (32%), Positives = 209/420 (49%), Gaps = 17/420 (4%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL-D 165
L+ R+ L T + G ++ LD I + ME ++Q LR+G Y+++ L
Sbjct: 34 LEGREAALATQLCFGVVQNEMLLDFYISKFSN--IPLRRMESKVVQALRLGLYQMLFLTK 91
Query: 166 MPPYAVVDENVRLAKVALR-PGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P A V+ +V L + + P A +VN ILR L N LP + ND A+ +
Sbjct: 92 IPQSAAVNCSVELTRTHCKNPRAPGMVNAILRSL----QRNLNQLPTIPQNDLAEY--FS 145
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQ 284
+YSHPVW+V LG E + + NNS P + N+ K + +
Sbjct: 146 ILYSHPVWLVEELLPLLGSEGTAEFLQANNSQPPMTAMVNTTKAAAQEATELLAEQGVEV 205
Query: 285 VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 344
PH + I KTG N+ + +GL VQD ++ L+ PG ++D CA
Sbjct: 206 TPHPWLENC--LILNKTG--NLERLDAYGQGLFYVQDPASRLMALASGAAPGMRVLDMCA 261
Query: 345 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNST 404
APGGK+ A + QG V + D++ + +++ A + S+I+ + AD + +
Sbjct: 262 APGGKSFAAAIQMDNQGEVISCDLHPHKKKLIQAGADRLGL-SIIKPMTADGKVRREEWV 320
Query: 405 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464
D VL+DAPCSGLGV+ K+ D+R+ + + +E+L +Q +L+ A+ VK GGVL+YS
Sbjct: 321 SAFDLVLVDAPCSGLGVIRKKPDIRY-KDPKPLEDLPQVQQAILENAAGYVKAGGVLMYS 379
Query: 465 TCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARL 524
TC+I P EN E V AFL +HPEF + A L + + G P H DG F +L
Sbjct: 380 TCTILPRENGEVVSAFLEKHPEF-VREACELPGAAGRVEAGEITLWPQVHQTDGFFICKL 438
>gi|162420599|ref|YP_001605204.1| 16S rRNA methyltransferase B [Yersinia pestis Angola]
gi|162353414|gb|ABX87362.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
Angola]
Length = 435
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 135/420 (32%), Positives = 217/420 (51%), Gaps = 36/420 (8%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
K++ D+D L+ ++ GT+R L+ I L + + + + ++ +G Y+++
Sbjct: 40 KNISDKDRALLQELCFGTLRVLPQLEWCIQQLM--ARPMTGKQRVFHYLIMVGLYQLIYT 97
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+PP+A + E V A V RP L+NG+LR+ + L + ND
Sbjct: 98 RIPPHAALAETVEGATVLKRPQLKGLINGVLRQF---QRQQVELLERAVNND-------- 146
Query: 225 TIYSHPVWMVRRWTK-YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKL 283
+ Y HP W++ R + Y Q + I + NN P LR N R+ +R++ + L +
Sbjct: 147 SHYLHPSWLLARIKQAYPAQWQQI--LDANNQRPPMWLRVN-RQHHSRSEYLELLTQADI 203
Query: 284 QV-PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 342
PH + + +R+ T V + G VQD SA V ++DPQ G+ I+D
Sbjct: 204 NAEPHPI---YRDAVRLITPC-AVNHLPGFELGWVTVQDASAQGCVDLLDPQNGEQILDL 259
Query: 343 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR---TF 399
CAAPGGKT ++ + + V A+DI++ RL + E + Q+ +V+R D R T+
Sbjct: 260 CAAPGGKTTHILEA-APKAHVLAVDIDEQRLSRVKENLQRLQLQAVVRV--GDGRAPDTW 316
Query: 400 ADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGG 459
+ + D++LLDAPCS GV+ + D++W RR D+ EL LQ E+++A +K GG
Sbjct: 317 CGDQ--QFDRILLDAPCSATGVIRRHPDIKWLRRDRDISELAQLQSEIIEAIWPKLKHGG 374
Query: 460 VLVYSTCSIDPEENEERVEAFLLRHPEFSI-DPADGLVPSDFVTKH-----GFFFSDPIK 513
VLVY+TCSI PEEN++++ AFL RHPE + + P H GFF++ IK
Sbjct: 375 VLVYATCSILPEENQQQIAAFLQRHPEAQLTETGTTAAPGKQNLPHPEDGDGFFYAKIIK 434
>gi|406027058|ref|YP_006725890.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
buchneri CD034]
gi|405125547|gb|AFS00308.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
buchneri CD034]
Length = 443
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 137/426 (32%), Positives = 216/426 (50%), Gaps = 36/426 (8%)
Query: 111 DLRLVTDIVGGTIRWRRYLDH-LICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPP 168
D L T+IV G I+ R L++ L L EKT E + ++L Y++ LD +P
Sbjct: 42 DKGLFTNIVYGVIQHRLTLEYQLRPFLREPEKT----ETWVKELLYTAMYQLEYLDRVPK 97
Query: 169 YAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYS 228
A+ DE +++AK G V GIL ++ + +P L+ + R L+ YS
Sbjct: 98 RAIFDETIKIAKQMGHDGTRRFVTGILHQM------DRQGMPNLDDIQDEKTR-LSIEYS 150
Query: 229 HPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHE 288
P W+V + LG+ + ++ N P S+RAN K +++ DL+ +L K E
Sbjct: 151 VPTWLVEMLDEQLGKPKTASILASLNKAPKQSVRANLAK-ISQKDLLA--DLAKDGYDAE 207
Query: 289 LSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGG 348
S E I + G +I + +GL +QDESA L V + P +++D C+APGG
Sbjct: 208 PSQVSSEGIIINDG--QIIHSDFFTDGLLTIQDESAMLPVESMQISPDDNVLDACSAPGG 265
Query: 349 KTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT----FADNST 404
KT +AS L G V+A+DI+K +L+ + A V + T D R F D
Sbjct: 266 KTTQIASRLKA-GKVFALDIHKNKLKTVQRNATRLGVYKQVETFELDARKVDTKFEDGL- 323
Query: 405 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464
D +L+DAPCSGLG+L ++ ++R+++ + D+ L +Q ++L+A S VK GG + YS
Sbjct: 324 --FDSILVDAPCSGLGLLRRKPEIRYDKTIADINRLSEIQLQILNAVSAKVKTGGTITYS 381
Query: 465 TCSIDPEENEERVEAFLLRHPEFSI---DPADGLVP-SDFVTKHGFFFSDPIKHSLDGAF 520
TC+I +EN++ + F+ +P F I A+ L P S V + P + DG F
Sbjct: 382 TCTIVKQENQDVIAKFISENPNFDITKTKTANHLNPDSKMVQIY------PDDYDSDGFF 435
Query: 521 AARLVR 526
L+R
Sbjct: 436 VCSLIR 441
>gi|357239284|ref|ZP_09126619.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
ictaluri 707-05]
gi|356751853|gb|EHI68983.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
ictaluri 707-05]
Length = 426
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 129/433 (29%), Positives = 221/433 (51%), Gaps = 43/433 (9%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
K L+D+D L+T+IV GTI + L+ + D ++ + +L I Y+++ L
Sbjct: 24 KGLNDKDKALITEIVYGTISRKLTLEWYLSHYIQDR---DKLDKWVYYLLMISLYQMLYL 80
Query: 165 D-MPPYAVVDENVRLAKV-ALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARA 222
D +P +A+V++ V +AK + GA VN ILR+ PLP++ R R
Sbjct: 81 DKIPNHAIVNDAVTIAKNRGNKKGAEKFVNAILRQFT------DKPLPEISSIKRKNKR- 133
Query: 223 LATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLK 282
A YS P W+V++ G+ A+ +M S R+ + V + L Q+ K
Sbjct: 134 YAIQYSLPTWLVKKLYDQFGENRALAIM------ESLFKRSKASIRVVNSALFEQI---K 184
Query: 283 LQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 342
+ SL + + +G + + K G +QDE++ LV ++ + + I+D
Sbjct: 185 EDTGAQESLLAETALTKASG--HFAASDYFKNGNITIQDETSQLVAPTLEIKGDEKILDA 242
Query: 343 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT---- 398
C+APGGKT++MAS L+ G + A+D+ +L ++ E A+ ++ I T D R
Sbjct: 243 CSAPGGKTVHMASYLTS-GQITALDLYDHKLALVRENAERLNLSDKIETKVMDAREVHKE 301
Query: 399 FADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPG 458
FA +S DK+L+DAPCSG+G++ ++ D+++N+ +D L+ +Q E+L + ++ G
Sbjct: 302 FAKDS---FDKILVDAPCSGIGLIRRKPDIKYNKDSQDFMTLQEIQLEILSSVCQTLRKG 358
Query: 459 GVLVYSTCSIDPEENEERVEAFLLRHPEF-----SIDPADGLVPSDFVTKHGFFFSDPIK 513
G++ YSTC+I EEN + +E FL HP F + + AD + K G P +
Sbjct: 359 GIITYSTCTIFDEENSQVIEKFLQSHPNFEQVKLNHERAD-------IVKDGCLTITPEQ 411
Query: 514 HSLDGAFAARLVR 526
+ DG F ++ R
Sbjct: 412 YQTDGFFIGQVRR 424
>gi|307132808|ref|YP_003884824.1| ribosomal RNA small subunit methyltransferase B [Dickeya dadantii
3937]
gi|306530337|gb|ADN00268.1| Ribosomal RNA small subunit methyltransferase B [Dickeya dadantii
3937]
Length = 431
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 139/425 (32%), Positives = 215/425 (50%), Gaps = 33/425 (7%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLD-HLICLLCHDEKTFSSMEPLLLQILRIGFYEIVK 163
+D+ ++D L+ +I G +R LD HL L+ K + + +L +L +G Y+++
Sbjct: 34 RDISEKDRGLLQEICFGVLRVLPQLDWHLRQLMA---KPLTGKQKVLHYLLMVGLYQLIH 90
Query: 164 LDMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARAL 223
+PP+A + E V A RP L+NG+LR+ +D +L+ N AR
Sbjct: 91 TRIPPHAALAETVNGAVALKRPQLKGLINGVLRQFQRQQDELQ---QRLQNNP---AR-- 142
Query: 224 ATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKL 283
Y+HP W+++R K Q+ +++ NN P LR N R+ TRA + L ++
Sbjct: 143 ---YAHPDWLLQRLKKAYPQQWE-RIVEANNQHPPMWLRVN-RQHHTRAAYLALLQEKEI 197
Query: 284 QV-PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 342
PH + IR+ T V Q ++G VQD SA + + PQ + I+D
Sbjct: 198 TAYPHAF---YPDAIRLGTPC-AVNQLPGFEQGWVTVQDASAQGCIHWLAPQDHEEILDL 253
Query: 343 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN 402
CAAPGGKT ++ + V A+D+++ RL+ + E L ++ D RT +
Sbjct: 254 CAAPGGKTTHILEA-APHAHVLAVDVDEQRLKRVREN--LQRLGQHAEVKCGDGRTPTEW 310
Query: 403 STVKC-DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVL 461
K D++LLDAPCS GV+ + D++W RR D+ EL LQ +L+A +K GG L
Sbjct: 311 CGDKLFDRILLDAPCSATGVIRRHPDIKWLRRDSDIAELASLQQAILEAIWPRLKSGGTL 370
Query: 462 VYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFA 521
VY+TCSI PEEN ++V AFL RHP D ++ +H + P DG F
Sbjct: 371 VYATCSILPEENHQQVAAFLQRHP-------DAVLVDTGRLEHPGIQNLPAAEDGDGFFY 423
Query: 522 ARLVR 526
A+LV+
Sbjct: 424 AKLVK 428
>gi|224493303|sp|A9R925.2|RSMB_YERPG RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
Length = 429
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 135/420 (32%), Positives = 217/420 (51%), Gaps = 36/420 (8%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
K++ D+D L+ ++ GT+R L+ I L + + + + ++ +G Y+++
Sbjct: 34 KNISDKDRALLQELCFGTLRVLPQLEWCIQQLM--ARPMTGKQRVFHYLIMVGLYQLIYT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+PP+A + E V A V RP L+NG+LR+ + L + ND
Sbjct: 92 RIPPHAALAETVEGATVLKRPQLKGLINGVLRQF---QRQQVELLERAVNND-------- 140
Query: 225 TIYSHPVWMVRRWTK-YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKL 283
+ Y HP W++ R + Y Q + I + NN P LR N R+ +R++ + L +
Sbjct: 141 SHYLHPSWLLARIKQAYPAQWQQI--LDANNQRPPMWLRVN-RQHHSRSEYLELLTQADI 197
Query: 284 QV-PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 342
PH + + +R+ T V + G VQD SA V ++DPQ G+ I+D
Sbjct: 198 NAEPHPI---YRDAVRLITPC-AVNHLPGFELGWVTVQDASAQGCVDLLDPQNGEQILDL 253
Query: 343 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR---TF 399
CAAPGGKT ++ + + V A+DI++ RL + E + Q+ +V+R D R T+
Sbjct: 254 CAAPGGKTTHILEA-APKAHVLAVDIDEQRLSRVKENLQRLQLQAVVRV--GDGRAPDTW 310
Query: 400 ADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGG 459
+ + D++LLDAPCS GV+ + D++W RR D+ EL LQ E+++A +K GG
Sbjct: 311 CGDQ--QFDRILLDAPCSATGVIRRHPDIKWLRRDRDISELAQLQSEIIEAIWPKLKHGG 368
Query: 460 VLVYSTCSIDPEENEERVEAFLLRHPEFSI-DPADGLVPSDFVTKH-----GFFFSDPIK 513
VLVY+TCSI PEEN++++ AFL RHPE + + P H GFF++ IK
Sbjct: 369 VLVYATCSILPEENQQQIAAFLQRHPEAQLTETGTTAAPGKQNLPHPEDGDGFFYAKIIK 428
>gi|347532281|ref|YP_004839044.1| 16S rRNA methyltransferase B [Roseburia hominis A2-183]
gi|345502429|gb|AEN97112.1| 16S rRNA methyltransferase B [Roseburia hominis A2-183]
Length = 444
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 130/426 (30%), Positives = 216/426 (50%), Gaps = 31/426 (7%)
Query: 96 VERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILR 155
V R++ + + LD R+ +T + GTI+ + LD+++ + M+P++ ILR
Sbjct: 29 VIRSVLEKYQYLDKRERAFLTRVAEGTIQRQIELDYILDQF--SKVKVRKMKPVIRAILR 86
Query: 156 IGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNL---VNGILRKLVLLKDNNSLPLPK 211
+G Y++ +D +P A +E V+LAK + G G L VNG+LR + D + P
Sbjct: 87 MGVYQLKYMDSVPASAACNEAVKLAK---KKGFGQLSGFVNGVLRGVSRGLDQLTYPKES 143
Query: 212 LEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTR 271
++ +A + YS P W+V +W G+E +++ + + ++RAN +
Sbjct: 144 VDA-----VKAWSVCYSMPEWIVAQWIGDYGKERTKEILAASLLEAPITVRANLERITPE 198
Query: 272 A-------DLVMQLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESA 324
A + V + L + P LS F G ++ KEGL VQD S+
Sbjct: 199 ALAERFKEEGVTAVPLDTEKYPG-LSYAYTIF-----GFDHLNGLSSFKEGLFYVQDISS 252
Query: 325 GLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQ 384
+V P+ G +D CAAPGGK++++A L G G V A D+++ ++ +++E K +
Sbjct: 253 MMVAEYAAPKEGDHCIDVCAAPGGKSIHLAEKLRGTGHVEARDVSEQKVALIDENIKRCR 312
Query: 385 VNSVIRTIHADLRTFADNSTVKCDKVLL-DAPCSGLGVLSKRADLRWNRRLEDMEELKIL 443
+ ++ T T D ++V+ VL+ D PCSGLGVL ++ D+++ E E L L
Sbjct: 313 LTNI--TAKCQDATVLDETSVRTADVLIADLPCSGLGVLRRKTDIKYRMNPEGEESLVAL 370
Query: 444 QDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTK 503
Q ++L VKPGG L+YSTC+I ENE F HPEF++D + P + +
Sbjct: 371 QRQILSVVCEYVKPGGTLIYSTCTIHTAENEGNARWFEQTHPEFALDTMRQMFPEEHLGD 430
Query: 504 HGFFFS 509
GFF +
Sbjct: 431 -GFFIA 435
>gi|299143974|ref|ZP_07037054.1| ribosomal RNA small subunit methyltransferase B [Peptoniphilus sp.
oral taxon 386 str. F0131]
gi|298518459|gb|EFI42198.1| ribosomal RNA small subunit methyltransferase B [Peptoniphilus sp.
oral taxon 386 str. F0131]
Length = 440
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 120/424 (28%), Positives = 224/424 (52%), Gaps = 23/424 (5%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+D RD L+ +I G ++ + L+H++ + + + +L IL++G Y+I
Sbjct: 34 IDKRDYNLIVNITTGVVQNKLLLEHIVS--KYSKIKIKKIHRTILTILQMGIYQIFFTSR 91
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQ---ARA 222
+P Y++++E+V LAK+ G+ VNG+LR + L+D ++ + ND + A
Sbjct: 92 IPDYSIINESVNLAKIFGNQGSAGFVNGLLRNI--LRDKENIEKSEFWLNDVKETDYAEY 149
Query: 223 LATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLK 282
L+ YSHP + V + G++ +L+ NN F++R N+ K + DL +L K
Sbjct: 150 LSIYYSHPKFYVDLILEEKGKDFTKELLKCNNVQAPFTIRVNTLK-CSVEDLAGKLK--K 206
Query: 283 LQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 342
E + + + VK ++++ + L KEG +QDE++ LV ++D
Sbjct: 207 RGFDTEKTKYSKNALIVKNP-ESILDSFLFKEGYFYIQDEASMLVSEFTKFNEKAKVLDL 265
Query: 343 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN 402
C+APGGK+ +A L+ + + DI+ ++ ++ E + + + I+ + D +
Sbjct: 266 CSAPGGKSFNIA-MLNRDASIISCDISNKKISLIRENMERLGIKN-IKILKNDATIYNKT 323
Query: 403 STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLV 462
D V++DAPCSGLG+ ++ +++WNR+ ED+E+L +Q +++ AS VK GG++
Sbjct: 324 FYNLFDNVIVDAPCSGLGLYRRKPEIKWNRKPEDIEKLTKIQMNIINNASKYVKIGGIIT 383
Query: 463 YSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAA 522
YSTC+I EENE+ + FL + F I+ + SD + +++ H++DG A
Sbjct: 384 YSTCTITREENEDIINKFLDENKNFEIEKIEN---SDILK----IYTNT--HNMDGFSIA 434
Query: 523 RLVR 526
++ R
Sbjct: 435 KIKR 438
>gi|301063983|ref|ZP_07204448.1| ribosomal RNA small subunit methyltransferase B [delta
proteobacterium NaphS2]
gi|300441894|gb|EFK06194.1| ribosomal RNA small subunit methyltransferase B [delta
proteobacterium NaphS2]
Length = 447
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 140/452 (30%), Positives = 229/452 (50%), Gaps = 30/452 (6%)
Query: 84 KGKGSGDNEMGYVERTLGF---RTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDE 140
K S N G ER L F + + +RD +V G +RW+ LD + L +
Sbjct: 8 KSLNSVTNAPGGAERRLEFLFSKNPHISERDRAFAVHLVQGVLRWQIRLDWI--LKQYVR 65
Query: 141 KTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLV 199
F ++P +L ILR+ ++I+ LD +P A V+E V+ A R VNGILR++
Sbjct: 66 FPFGKIDPEVLDILRLALFQIIFLDRVPDSAAVNEAVKQADKKGRKHVARFVNGILRQIC 125
Query: 200 LLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSF 259
++ LP P E R R++ +++P+W+V++WT+ LG + A++LM N P
Sbjct: 126 --REKGQLPYPHSE-KQRDFYRSV--YHAYPMWLVKKWTRELGPDMALRLMETGNQTPRL 180
Query: 260 SLRANSRKGVTRADLVMQL---NLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGL 316
+R N+ + TR DL+ +L N+ VP+ E I + +V + KEG
Sbjct: 181 VVRTNTLRN-TREDLLERLEKENIEARAVPYA-----PEGIELTRVGGSVSRLRSFKEGR 234
Query: 317 CAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRIL 376
VQ E+A + ++ P ++D CA GGK+ +MA + +G + A+D + RLR L
Sbjct: 235 FQVQGEAAQICARLLSPGKSHRVLDMCAGLGGKSTHMAQLMGDRGWILALDTSIPRLRGL 294
Query: 377 ---NETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRR 433
E + ++ V+ A L F K ++D+PCSGLGV+SK D + ++
Sbjct: 295 KRNTERLGIRSISPVVADATASLSCFRS----VFHKSMVDSPCSGLGVISKHPDTKLTKK 350
Query: 434 LEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPAD 493
+D++ L ++Q +L + + GG ++Y TC+I EENEE VE+ L ++
Sbjct: 351 EDDIKRLAMVQKSILFRSCEKLAAGGEMLYVTCTISEEENEEVVESILRKNNRIIFQDLR 410
Query: 494 GLVPS---DFVTKHGFFFSDPIKHSLDGAFAA 522
+P+ D V +GFF + P H ++G FAA
Sbjct: 411 QRIPAWGFDLVNDNGFFKTFPHVHGMEGFFAA 442
>gi|340398389|ref|YP_004727414.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
salivarius CCHSS3]
gi|338742382|emb|CCB92887.1| ribosomal RNA small subunit methyltransferase B (rRNA
(cytosine-C(5)-)-methyltransferase) [Streptococcus
salivarius CCHSS3]
Length = 440
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 137/430 (31%), Positives = 226/430 (52%), Gaps = 45/430 (10%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L D+D LVT++V GT+ + L+ ++ + D +EP + +L + Y++ LD
Sbjct: 40 LTDKDKALVTEVVYGTVARKITLEWILAHVIEDR---DKLEPWVYDLLLLSLYQLAYLDK 96
Query: 166 MPPYAVVDENVRLAKV-ALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P +AVV++ V +AK + GA LVN +LRKL +S PLP R R +
Sbjct: 97 IPAHAVVNDAVSIAKNRGNKKGAEKLVNAVLRKL------SSQPLPDPSQIKRVNKR-YS 149
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQ 284
YS PVW+V++ G++ A+ + S +R + VT A + ++
Sbjct: 150 VQYSLPVWLVKKLIDQYGEDRALAIF------QSLFVRNKASVRVTDASRLEEI------ 197
Query: 285 VPHELSLHLDEFIRVKTGLQNVIQAG------LLKEGLCAVQDESAGLVVAVVDPQPGQS 338
E + + GL V +G KEGL +QDE++ LV + Q +
Sbjct: 198 ---EEATGAQRSVLSPVGL--VKSSGYFAGTDYFKEGLLTIQDETSQLVAPTLGIQGEEE 252
Query: 339 IVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADL-- 396
I+D CAAPGGKT++MAS L+ G V A+D+ +L ++ E A+ + ++T D
Sbjct: 253 ILDACAAPGGKTVHMASYLTS-GHVTALDLYDHKLALIEENAQRLGLADKVKTQKLDASQ 311
Query: 397 --RTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLL 454
+ F +S DK+L+DAPCSG+G++ ++ D+++N+ L+D E LK +Q ++L +
Sbjct: 312 VHQVFPADS---FDKILVDAPCSGIGLIRRKPDIKYNKDLQDFESLKAVQLDILSSVCQT 368
Query: 455 VKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKH 514
++ GG++ YSTC+I EEN+E ++AFL HP+F D P + +G P ++
Sbjct: 369 LRKGGIITYSTCTIIAEENQEVIQAFLESHPDFEQVALDH--PCKDIVVNGCLAITPEQY 426
Query: 515 SLDGAFAARL 524
DG F A+L
Sbjct: 427 LTDGFFIAQL 436
>gi|227890276|ref|ZP_04008081.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus johnsonii
ATCC 33200]
gi|227849090|gb|EEJ59176.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus johnsonii
ATCC 33200]
Length = 438
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 137/431 (31%), Positives = 226/431 (52%), Gaps = 38/431 (8%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD 165
DL D L T IV GTI+++ +L++ + L + S ++PLLL + Y+ L+
Sbjct: 34 DLKLADKALATRIVYGTIQYKIFLEYQLKPLIKTKLRDSFLKPLLL----MSAYQYFFLE 89
Query: 166 -MPPYAVVDENVRLAKVALRPGAGN--LVNGILRKLVLLKDNNSLPLPKLEGNDRAQARA 222
+P A+ DE +LAK + +G+ LVNGILR L + LP ND +
Sbjct: 90 KVPANAIFDEANKLAKKYSKRNSGSYKLVNGILR--ALERQGKILP----PTNDLVEY-- 141
Query: 223 LATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKG-VTRADLVMQLNLL 281
L+ S P W+V + G+ E K++V +N + S+R +++ ++ +
Sbjct: 142 LSIKESFPKWLVEYLLDHFGENETKKILVRSNQPAANSIRMTTKESDFEEIKEELKKDTF 201
Query: 282 KLQ----VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQ 337
+ PH L+L+ K G V Q L K G +QD +A L V D + +
Sbjct: 202 SFEESSLTPHNLNLN-------KGG---VAQTALFKNGKITIQDAAASLAVDAFDFKGSE 251
Query: 338 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR 397
++D C+APGGKT+ +A L+ G V A+DI++ +LR++ A+ V+ ++T D R
Sbjct: 252 QVLDACSAPGGKTVQIAENLT-TGSVIALDIHENKLRLVRNAAERLHVSDKVKTKALDAR 310
Query: 398 TFADN-STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVK 456
+ + + DK+L+DAPCSGLG++ ++ ++R+ + L D++ L +Q +L++ S L+
Sbjct: 311 KSKEYFNQRQFDKILVDAPCSGLGLIRRKPEIRYEKSLNDIKNLAKIQLAILESVSGLLA 370
Query: 457 PGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPAD-GLVPSDFVTKHGFFFSDPIKHS 515
GG LVYSTC+I EE+E V+ FL HP+F + P G +P + + F P
Sbjct: 371 NGGELVYSTCTISYEEDEGIVKQFLKLHPDFELIPVQVGKLPKQEMVR--IF---PSSDG 425
Query: 516 LDGAFAARLVR 526
DG F A+L +
Sbjct: 426 SDGFFIAKLKK 436
>gi|146297084|ref|YP_001180855.1| 16S rRNA methyltransferase B [Caldicellulosiruptor saccharolyticus
DSM 8903]
gi|145410660|gb|ABP67664.1| sun protein [Caldicellulosiruptor saccharolyticus DSM 8903]
Length = 433
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 123/404 (30%), Positives = 215/404 (53%), Gaps = 23/404 (5%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPY 169
D L ++V G +R++ LD+ I + + +L ILRI YE++ LD +P Y
Sbjct: 40 DRALFVELVHGVLRYKNILDYYINFVAKK----GVKDKKILNILRIATYELLFLDKIPDY 95
Query: 170 AVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSH 229
A V+E LAK + + VN ILR ++ KD L +++ + L+ S+
Sbjct: 96 ATVNEACELAK-NVNKNQKDFVNAILRNIIRRKDEIEKALERVK--EVNIKDFLSIKLSY 152
Query: 230 PVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL--LKLQVPH 287
P +++ K G ++ +K++ + N+ P S++ N++K +++A+ + +L + +VP
Sbjct: 153 PKFLIDYLEKSYGFDKTVKILEFLNTKPLQSIKINTKK-ISQAEFLKKLEACGYEYKVP- 210
Query: 288 ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVV--DPQPGQSIVDCCAA 345
EL+ E + + G N+ ++ L ++G QD ++ +V D + SI+D CAA
Sbjct: 211 ELN---REIVYIVKG--NIKESELYRDGYFYYQDLASSFIVKWNRDDFEKASSILDLCAA 265
Query: 346 PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTV 405
PGGKT A +G V + D+NK ++ L E ++V+ D T ++
Sbjct: 266 PGGKTFNCAEV--TRGFVVSCDVNKSKIERLRENLLRLGFDNVV-VAENDALTLNEDFVG 322
Query: 406 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465
K D V+ D PCSG G + K+ D++WN+ ED+E L LQ ++LD A+ +K GG++ YST
Sbjct: 323 KFDIVIADLPCSGFGTIRKKPDIKWNKTKEDIENLHELQLKMLDNAAQYLKEGGIIFYST 382
Query: 466 CSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFS 509
C++ ENE+ V FL +H +FS+ + + P ++ GFF +
Sbjct: 383 CTLGHRENEDTVLKFLEKHKDFSLISQNTIFPDEYKC-DGFFIA 425
>gi|335357195|ref|ZP_08549065.1| 16S rRNA m(5)C 967 methyltransferase [Lactobacillus animalis KCTC
3501]
Length = 449
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 129/392 (32%), Positives = 207/392 (52%), Gaps = 26/392 (6%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
+ +L RD L+T+IV G I+ + L++ + K + ++ + Q+L Y+
Sbjct: 35 IKQNELTKRDAHLLTNIVYGVIQHKLTLEYYLKPFI---KRPNKLQSWVKQLLLTALYQQ 91
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEG-NDRAQ 219
+ LD +P AV +E + +AKV G V GIL + + +P L+ D +
Sbjct: 92 IYLDNIPKRAVFNETIEIAKVKGHAGVRKFVTGILHAI------DRQGIPSLDAITDPIE 145
Query: 220 ARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLN 279
A ++AT S P W+V + K +G + ++ N P ++R N+ K T L QL
Sbjct: 146 ALSIAT--STPRWLVEQLQKEVGTAKTKSILETINQAPKQTVRINT-KVTTAEALAAQLE 202
Query: 280 LLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSI 339
KL+V L ++V TG +A K G VQDESA LVV + G +
Sbjct: 203 AEKLEVAKSPVTPLA--LQVNTGFIPATEA--FKTGQAIVQDESAMLVVESMAINAGDQV 258
Query: 340 VDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT- 398
+D CAAPGGKT +A+ L G V ++DI+K ++ ++ + A V + ++ + D R
Sbjct: 259 LDACAAPGGKTTQIAAQLET-GQVTSLDIHKHKVALIEQNALRAHVEAQVKALQMDARKA 317
Query: 399 ---FADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLV 455
FA S DK+L+DAPCSG+G+L ++ ++++ ++ +D +L +Q +LDA + L+
Sbjct: 318 SEEFAKES---FDKILVDAPCSGIGLLRRKPEVKYEKKYQDSLDLHRIQVSILDAVAPLL 374
Query: 456 KPGGVLVYSTCSIDPEENEERVEAFLLRHPEF 487
K GG L YSTC+I EN++ V AFL HPEF
Sbjct: 375 KVGGTLTYSTCTILDSENQQTVSAFLKAHPEF 406
>gi|153953997|ref|YP_001394762.1| hypothetical protein CKL_1372 [Clostridium kluyveri DSM 555]
gi|219854611|ref|YP_002471733.1| hypothetical protein CKR_1268 [Clostridium kluyveri NBRC 12016]
gi|146346878|gb|EDK33414.1| Hypothetical protein CKL_1372 [Clostridium kluyveri DSM 555]
gi|219568335|dbj|BAH06319.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 443
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 125/430 (29%), Positives = 225/430 (52%), Gaps = 31/430 (7%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKT-FSSMEPLLLQILRIGFYEIVKL 164
DL+ +D L+T++V GT++++ +D C+L + K+ M +L +LRI ++ L
Sbjct: 34 DLNKKDRALITELVYGTLKYKYTID---CILKNFIKSNLEKMNKDILNMLRISICQLRYL 90
Query: 165 D-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARAL 223
D +P +AVV+E V +K + LVNG+LR + K N+ GN + +
Sbjct: 91 DKIPEFAVVNEAVEFSK-NISFKLSKLVNGVLRNYLRNKSNS------FGGNKEDKIEGI 143
Query: 224 ATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTR---ADLVMQLNL 280
YS P WM + G++ +M N P ++R N+ K + +L++
Sbjct: 144 CFEYSFPRWMAELFINQYGEDLGKFIMGSLNVVPKVTVRINTLKTDYKHAWNELIVNGYD 203
Query: 281 LKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIV 340
+K ++ E + + G N+ L ++G VQDESA LV +D + +I+
Sbjct: 204 VKRGNVYK------EAVIINKG-SNIELNPLFEKGHITVQDESAMLVSYFMDVEENMTIL 256
Query: 341 DCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 400
D C+APGGK+ ++ + G V+ D+ + +L ++ A+ + + I D +
Sbjct: 257 DLCSAPGGKSCHIGELMKNTGNVHCYDLYESKLSLVRHNAERLGIKN-ITCKKLDAAKYL 315
Query: 401 DNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGV 460
+ D+VL+D PCSGLG++ K+ +++WN++ + +++L +Q +++ A+ VK GG
Sbjct: 316 EKLKDTADRVLIDVPCSGLGIIRKKPEIKWNKKEDSLKDLIEIQRKIILNAARYVKVGGK 375
Query: 461 LVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDF----VTKHGFFFSDPIKHSL 516
LVYSTC+++ +ENEE + F+ R+P++ +D L DF + G+ P H +
Sbjct: 376 LVYSTCTLNKKENEENINWFISRNPQYKLDK---LYCGDFHNIIYHEEGYMTILPDNH-M 431
Query: 517 DGAFAARLVR 526
DG F ARL++
Sbjct: 432 DGFFIARLIK 441
>gi|291536615|emb|CBL09727.1| ribosomal RNA small subunit methyltransferase RsmB [Roseburia
intestinalis M50/1]
gi|291541043|emb|CBL14154.1| ribosomal RNA small subunit methyltransferase RsmB [Roseburia
intestinalis XB6B4]
Length = 446
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 123/405 (30%), Positives = 206/405 (50%), Gaps = 19/405 (4%)
Query: 114 LVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVV 172
+T +V GTI+ LD++I + ++ ILR+G Y+I +D +P A
Sbjct: 46 FLTRLVEGTIQHMIELDYVIDQFSKVKVKKMKP--VIRNILRMGVYQIQYMDSVPDSAAC 103
Query: 173 DENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVW 232
+E V+LA+ + VNG+LR + +++ S+ P E + AL+ YS P W
Sbjct: 104 NEAVKLARKSGFSTLSGFVNGVLRNIA--RNSGSIRYPDEE---KEPVLALSVRYSMPEW 158
Query: 233 MVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL--LKLQVPHELS 290
+V W G E+ ++ + + ++R N K +T L QL + +Q ELS
Sbjct: 159 IVEEWLNAYGMEQTKAILDAFSKEAPITIRTNVTK-ITPDALKEQLKAEGVTVQTLEELS 217
Query: 291 L----HLD--EFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 344
+ D + +G +++ ++GL VQD S+ +V P+ G ++D CA
Sbjct: 218 YAGLPYTDAYHYAFAISGFDHLMALPSFQDGLFYVQDISSMMVAEAAAPEKGAHVIDVCA 277
Query: 345 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNST 404
APGGK++++A L G G V + D+ + ++ E +Q+ ++ + D +++
Sbjct: 278 APGGKSIHLAEMLDGTGSVESRDLTGYKTGLIEENISRYQIKNMTTKVW-DATVPDESAE 336
Query: 405 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464
D ++ D PCSGLGVL K+ D+R+ EEL+ LQ +LD VK G++VYS
Sbjct: 337 DTADVLVADLPCSGLGVLRKKTDIRYKMSRGQQEELEELQRRILDTICSYVKKDGIMVYS 396
Query: 465 TCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFS 509
TC+I+P EN+E V FL +HPEF + + + P V GFF++
Sbjct: 397 TCTINPGENQENVAWFLGKHPEFELLDMEQIYPGTQVGD-GFFYA 440
>gi|363891855|ref|ZP_09319030.1| ribosomal RNA small subunit methyltransferase B [Eubacteriaceae
bacterium CM2]
gi|361964850|gb|EHL17856.1| ribosomal RNA small subunit methyltransferase B [Eubacteriaceae
bacterium CM2]
Length = 436
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 122/407 (29%), Positives = 215/407 (52%), Gaps = 24/407 (5%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
F+ DLD +T IV G + YLD+ I + + FS + IL + F+EI
Sbjct: 30 FKNVDLDYEMRGFITYIVYGVLSNINYLDYFIKK--YSDIAFSKISKKAKLILEMAFFEI 87
Query: 162 VKLDMP-PYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPK-LEGND-RA 218
+ ++ YA V+ENV+L K A + VN +LRK D N++ K E +D +
Sbjct: 88 IFMNSSVNYASVNENVKLVK-KYDNRAKSFVNAVLRKFT--SDENNIKNAKNYEFSDIKE 144
Query: 219 QARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQL 278
+ ++T YS ++ +R + +L++ + P+ +R N K T D ++
Sbjct: 145 DIKYISTRYSVSDYIAQRLLDNYKNKFTEELLMSMSDTPNIFIRGNRLK--TDID-DLKR 201
Query: 279 NLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQS 338
NL KL E+ + + +K +++ + + + G +VQD ++ V + P+P ++
Sbjct: 202 NLQKLGNKFEIIDEENMIVSLK-NFKDISKNDMYRNGFFSVQDYASMKAVLALSPEPFEN 260
Query: 339 IVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT 398
++D CAAPGGK+++MA + +G + ++DI+ +L++L E AK +N +I+T D
Sbjct: 261 VLDICAAPGGKSVFMAELMGNKGSITSLDISSKKLKLLEEQAKRLGIN-IIKTYVNDATI 319
Query: 399 FADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPG 458
+ K DKVL D PCSG+G+L ++ ++R+ ++ ED++ + +Q ++L ASL +K
Sbjct: 320 YKSEYKNKFDKVLCDVPCSGIGILRRKPEIRY-KKFEDIQNIIDVQKQILKNASLYLKKD 378
Query: 459 GVLVYSTCSIDPEENEERVEAFLLRHPEFS----------IDPADGL 495
G+LVYSTC++ EEN + + FL ++ F ID DG
Sbjct: 379 GILVYSTCTLGKEENSDIISEFLSKNINFELIFQKEYYPHIDSTDGF 425
>gi|224541737|ref|ZP_03682276.1| hypothetical protein CATMIT_00909 [Catenibacterium mitsuokai DSM
15897]
gi|224525341|gb|EEF94446.1| ribosomal RNA small subunit methyltransferase B [Catenibacterium
mitsuokai DSM 15897]
Length = 439
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 126/420 (30%), Positives = 220/420 (52%), Gaps = 36/420 (8%)
Query: 94 GYVERTLGFR-TKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQ 152
Y+ TL T+D + L+T +V GTI+ R YL++ L H +E +LL
Sbjct: 44 SYLNITLNHTLTQDFSPSERGLITTLVYGTIQNRLYLEY--QLEPHIHTRLKVVEKMLL- 100
Query: 153 ILRIGFYEIVKLDMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKL 212
+ Y+ LD P YA+V+E V + K AG ++N IL K+ SL
Sbjct: 101 --LMSLYQHFYLDTPDYAIVNEAVEIIKERRNKRAGGMINAILHSC--FKETRSL----- 151
Query: 213 EGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRA 272
+D L+ SHP+WMV+ + G+E K++ +N P S R N+ K ++R
Sbjct: 152 --DDLDHDERLSISTSHPLWMVKMFNAQYGKETTEKILHADNEVPLKSGRMNTYK-MSRE 208
Query: 273 DLVMQLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVD 332
+ + + P LS + + +K G N+ KEGL +QDES+ +V +++
Sbjct: 209 EFLKKYPEF---TPGYLS---PDSVLLKEG--NIAHTEAFKEGLVTIQDESSQMVARLLN 260
Query: 333 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTI 392
P ++D C APG KT ++ ++ +GL+ D+ + +++ + AK ++++ +
Sbjct: 261 PGEEDVVLDMCGAPGSKTTHLGILMNNKGLIDVYDLYPHKAKLIEDNAKRLGLSNI--HV 318
Query: 393 H----ADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELL 448
H DL F T K+LLD PCSGLGVLS++ +++++ + M+E+ ++Q +LL
Sbjct: 319 HTGDSTDLSLFDKQYT----KILLDGPCSGLGVLSRKPEIKYHDS-DAMDEIILIQAKLL 373
Query: 449 DAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFF 508
+ A L GG +VYSTC+I+ +ENE+++E F+ +HP+ + ++P ++ + GF+
Sbjct: 374 ENAYSLCIKGGNIVYSTCTINKKENEKQIEKFIKKHPDMHVVEERTILPFEYHSD-GFYM 432
>gi|295425221|ref|ZP_06817924.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
amylolyticus DSM 11664]
gi|295064997|gb|EFG55902.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
amylolyticus DSM 11664]
Length = 447
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 145/473 (30%), Positives = 234/473 (49%), Gaps = 52/473 (10%)
Query: 61 RAVSAVRLMRIQFGGAFADL-LNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIV 119
RA++ L+R+ G+++++ LN K S +L D L T IV
Sbjct: 14 RAIALETLIRVLENGSYSNISLNNNLKHS-----------------NLSVADQNLATKIV 56
Query: 120 GGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRL 178
GTI+++ YL++ + L + T ++PLLL + Y+I+ LD +P AV+DE +L
Sbjct: 57 YGTIQYKIYLEYQLHDLIKSKITEKYLKPLLL----MSAYQILFLDKVPNRAVLDEANKL 112
Query: 179 AK-VALRPGAG-NLVNGILRKLV----LLKDNNSLPLPKLEGNDRAQARALATIYSHPVW 232
AK + +G LVNGILR L +L D N L L+ S P W
Sbjct: 113 AKQFGKKHSSGFRLVNGILRSLTRRGPILPDKNDL------------VNYLSVKESFPRW 160
Query: 233 MVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLH 292
+V + G+ K++ N S+R + + + V L + P L
Sbjct: 161 LVEYFISLWGEARTEKILASYNETAKNSVRLSILQDEEKT--VAALKQAGYE-PTPSKLA 217
Query: 293 LDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLY 352
+ I V G + + L K+G +QDE+A LVV D + + ++D C+APGGKT+
Sbjct: 218 ANVAILVHGG---IASSSLFKQGKLTIQDEAASLVVDAFDFKGNEKVLDACSAPGGKTVQ 274
Query: 353 MASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVKCDKVL 411
+A L G V A+DI+ +LR++ + K V ++T+ D R D S + K+L
Sbjct: 275 IAEHLQ-TGEVTALDIHDKKLRLVQQNTKRMNVADKVKTVAIDARKADDYFSKQQFAKIL 333
Query: 412 LDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPE 471
+DAPCSGLG+L ++ ++R+ + D+ L +Q +L+ S L++ G L+YSTC+I E
Sbjct: 334 VDAPCSGLGLLRRKPEIRYTKSKNDLFSLAKIQLAILNHVSCLLENDGELIYSTCTISKE 393
Query: 472 ENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARL 524
E+E+ + FL HP+F++ P +K G P ++ DG F A+L
Sbjct: 394 EDEDVIRKFLAAHPDFALQP---FKLEKISSKTGMLKILPDEYGSDGFFIAKL 443
>gi|335047382|ref|ZP_08540403.1| ribosomal RNA small subunit methyltransferase B [Parvimonas sp.
oral taxon 110 str. F0139]
gi|333761190|gb|EGL38745.1| ribosomal RNA small subunit methyltransferase B [Parvimonas sp.
oral taxon 110 str. F0139]
Length = 434
Score = 179 bits (453), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 129/427 (30%), Positives = 214/427 (50%), Gaps = 26/427 (6%)
Query: 100 LGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFY 159
L TK++ D D + + +IV GT+ R YLD++I LC + P +L ILRI Y
Sbjct: 23 LNKNTKNISDLDSKFLREIVYGTLENRIYLDYIIKKLC--KLRIKKFNPYILNILRISIY 80
Query: 160 EIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRA 218
+I+ +D +P +A+++E V L KV + VNG LR + N K++ +D
Sbjct: 81 QIIFMDKIPEFAIINEAVNLTKVFKLKKFSSFVNGSLRNFL----RNKEDFIKIKADDVE 136
Query: 219 QARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQL 278
+A ++ YS + +V+ G+EE IK++ + S P F +R +S + T +V L
Sbjct: 137 EAISIK--YSANMDIVKILLSDYGREETIKILENSISKPHFVIRISSFEK-TEEKVVKDL 193
Query: 279 NLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQS 338
++ L F+ T N+++ K G VQD + L V+ P+
Sbjct: 194 EKDGYKLKKSEISKLTYFVENPT---NILETESFKIGDFTVQDVGSILTGEVLSPKENSK 250
Query: 339 IVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT 398
++D C+APGGKT ++A + G ++A DI K +L+ + E K + +V + ++ D
Sbjct: 251 VLDICSAPGGKTCHLAFQMKNSGEIFANDIVKTKLKKIEENCKRLNIKNV-KLLNFDASI 309
Query: 399 FADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPG 458
+ + + D +L D CSG+GV+ ++ +++ R E ++E+ LQ ++ D A +K
Sbjct: 310 YKEEYKEQFDYILCDVICSGIGVMDRKPEIKLFRSQETIDEIIELQRKIFDNAVEYLKDK 369
Query: 459 GVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPAD---------GLVPSDFVTKH-GFFF 508
G +VYSTCS+ ENEE V+ FL +H I L+P KH GFF
Sbjct: 370 GEIVYSTCSVLKCENEENVKYFLEKHKNLKIKEVKFLGKLEKFIKLLPEK--QKHNGFFI 427
Query: 509 SDPIKHS 515
IK +
Sbjct: 428 IKFIKEN 434
>gi|73662864|ref|YP_301645.1| tRNA and rRNA cytosine-C5-methylase [Staphylococcus saprophyticus
subsp. saprophyticus ATCC 15305]
gi|72495379|dbj|BAE18700.1| putative tRNA and rRNA cytosine-C5-methylase [Staphylococcus
saprophyticus subsp. saprophyticus ATCC 15305]
Length = 436
Score = 179 bits (453), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 124/430 (28%), Positives = 225/430 (52%), Gaps = 63/430 (14%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD 165
+L+ D L T++V GT++ + LD+L+ + ++ + Q+L + Y+ V LD
Sbjct: 37 ELNRADKGLYTELVYGTLKRKYTLDYLLKPFVQ-----TKLKGWVRQLLWMSIYQYVYLD 91
Query: 166 -MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P +A+++E V +AK P GN+VNGILR ++ + LP +D+ + +A
Sbjct: 92 KIPEHAIINEAVEIAKYKGGPHNGNVVNGILRNIM----RSDLPDFTEITDDK---KRIA 144
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQ 284
YS P W+V WT + G E+ + ++ + + +++NL ++
Sbjct: 145 IEYSLPKWLVDHWTTHFGIEKTETI---------------AQSFLDKVTTTVRVNLTRIS 189
Query: 285 VPHELSLHLDEFI-----RVKTGL----QNVIQAGLLKEGLCAVQDESAGLVVAVVDPQP 335
V + D++I ++T L + +I++ + K+GL ++QD+S+ + ++ +
Sbjct: 190 VDDAIRRLTDDYIVEQDREIETCLHISGKPIIESRMFKDGLISIQDKSSMFIGELMALKE 249
Query: 336 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIH-A 394
G ++D C+APGGK ++A L+G G V A DI++ ++ +++ IR + +
Sbjct: 250 GDQVLDACSAPGGKACHIAEILNGTGHVDATDIHEHKIDLIDFN---------IRKLRLS 300
Query: 395 DLRTFADNSTVKCDKV----LLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDA 450
++ F ++T K DKV L+DAPCSGLGVL + ++++ + +E L +Q E+L+
Sbjct: 301 NISAFEHDATEKYDKVYDKILVDAPCSGLGVLRHKPEIKYEQSQHAIESLVEIQLEILNN 360
Query: 451 ASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSID----PADG-------LVPSD 499
VKPGG ++YSTC+I+ ENE V FL + +F D P G ++P D
Sbjct: 361 VKYNVKPGGTMIYSTCTIEQMENENVVYTFLKENKDFEFDQFEHPITGEKVKTMQILPQD 420
Query: 500 FVTKHGFFFS 509
F GFF +
Sbjct: 421 F-NSDGFFIT 429
>gi|78778810|ref|YP_396922.1| sun protein [Prochlorococcus marinus str. MIT 9312]
gi|78712309|gb|ABB49486.1| sun protein [Prochlorococcus marinus str. MIT 9312]
Length = 438
Score = 179 bits (453), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 126/424 (29%), Positives = 214/424 (50%), Gaps = 19/424 (4%)
Query: 89 GDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEK-TFSSME 147
GD +E+ L R + D+ +T++ G IR+R++LD H K T
Sbjct: 21 GDFSDHALEKVL--RNYQFNPLDIAFITELSFGCIRYRKFLD---LWTDHTSKITHKKQP 75
Query: 148 PLLLQILRIGFYEIVKLDMPPY-AVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNS 206
P L +L IG Y+++K+D P+ A + V +AK G VN ILR +
Sbjct: 76 PKLRWLLHIGLYQLLKMDKIPFPAAISTTVEVAKKTDLNGLAGTVNAILRNASRKLEQKI 135
Query: 207 LPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSR 266
LP + +R ++ + S P+W+++ K++G E ++ N PS LR N
Sbjct: 136 LPELSSDRKER-----ISYLESFPLWLLKDLYKWVGNSEGENIIKAFNKKPSIDLRINQL 190
Query: 267 KGVTRADLVMQLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGL 326
K T D +++ L + + E+ L I +K+ +++ +GL +QD S+
Sbjct: 191 K--TNLDNFLKV-LHENNIDAEIIKDLHNGITLKSNPRSIKNLPGYSDGLWTIQDRSSQW 247
Query: 327 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVN 386
+ +++P+ G+ I+D CAAPG K+ ++A + + A+D + RL+IL + +
Sbjct: 248 IAPLLNPKEGEKILDACAAPGSKSTHLAELTNDSAEIIAVDRSAKRLKILQSNLERLNLK 307
Query: 387 SVIRTIHADLRTFAD---NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKIL 443
SV T+ AD + + DK+LLDAPCSG+G LS+ D RW+ E ++ L +L
Sbjct: 308 SV-NTLKADATSLIELNPKFISYFDKILLDAPCSGIGTLSRNPDSRWSLSKEKIKSLTLL 366
Query: 444 QDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTK 503
Q++LL++ L+K G LVYSTC+I P+EN +E F+ ++ + ++PS
Sbjct: 367 QEKLLESIFPLLKKEGTLVYSTCTICPDENNLLIERFIEKNKTLKLVGQKQILPSLDYPG 426
Query: 504 HGFF 507
GF+
Sbjct: 427 DGFY 430
>gi|157412841|ref|YP_001483707.1| Sun protein [Prochlorococcus marinus str. MIT 9215]
gi|157387416|gb|ABV50121.1| Sun protein (Fmu protein) [Prochlorococcus marinus str. MIT 9215]
Length = 438
Score = 178 bits (452), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 123/426 (28%), Positives = 212/426 (49%), Gaps = 19/426 (4%)
Query: 87 GSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEK-TFSS 145
SGD +E+ L + + D+ +T++ G IR+R++LD H K T
Sbjct: 19 SSGDFSDHALEKVL--KNYQFNSLDIAFITELSFGCIRYRKFLD---LWTDHTSKITHKK 73
Query: 146 MEPLLLQILRIGFYEIVKLDMPPY-AVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDN 204
P L +L IG Y+++K+D P+ A + V +AK G VN ILR +
Sbjct: 74 QPPKLRWLLHIGLYQLLKMDKIPFPAAISTTVEVAKKTDLNGLAGTVNAILRNASRKLEQ 133
Query: 205 NSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRAN 264
P + +R ++ + S P+W+V+ K++G E ++ N PS LR N
Sbjct: 134 KIFPELSSDKKER-----ISYLESFPLWLVKDLYKWVGNSEGENIIKAFNKKPSIDLRIN 188
Query: 265 SRKGVTRADLVMQLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESA 324
K L++ L + ++ E+ L I +K+ +++ +GL +QD S+
Sbjct: 189 QLKTNLDKFLIV---LYENKIDAEIIKDLHNGITLKSNPRSIKNLPGYSDGLWTIQDRSS 245
Query: 325 GLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQ 384
+ +++P+ G+ I+D CAAPG K+ ++A + + A+D ++ RL+IL
Sbjct: 246 QWIAPLLNPKEGEKILDACAAPGSKSTHLAELTNDSAEILAVDRSEKRLKILQSNLVRLN 305
Query: 385 VNSVIRTIHADLRTFAD---NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELK 441
+ SV T+ AD + + DK+LLDAPCSG+G LS+ D RW+ E ++ L
Sbjct: 306 LKSV-NTLKADATSLIELNPKFISYFDKILLDAPCSGIGTLSRNPDSRWSLSKEKIKSLT 364
Query: 442 ILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFV 501
+LQ++LL+ L+K G++VYSTC+I P+EN +E F+ ++ + ++P
Sbjct: 365 LLQEKLLEKIFPLLKKDGIMVYSTCTICPDENNLLIEKFIEKNKGLKLVSQKQILPRLDY 424
Query: 502 TKHGFF 507
GF+
Sbjct: 425 PGDGFY 430
>gi|218290478|ref|ZP_03494598.1| sun protein [Alicyclobacillus acidocaldarius LAA1]
gi|218239499|gb|EED06694.1| sun protein [Alicyclobacillus acidocaldarius LAA1]
Length = 451
Score = 178 bits (452), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 149/434 (34%), Positives = 224/434 (51%), Gaps = 33/434 (7%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+D+RD L T+I GT+R + LD L+ L + S ++P + ILR+G Y++ L+
Sbjct: 36 VDERDRALATEIAYGTLRRQITLDRLLSPLVR--RPMSKLDPEVRVILRMGAYQMTWLNR 93
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P YAV ++ V LAK RP A LVN +LR+ + L K + R +
Sbjct: 94 VPAYAVANDAVELAK-RHRPQAAALVNAVLRRYAERAQDWEDLLNKAIAGAKDVER-WSV 151
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLL-KLQ 284
+YS P W+V R G + + + N SLRAN +G TR + + +L +
Sbjct: 152 MYSVPAWIVERLVADHGADRVLAALASMNEPAPMSLRANRLRG-TREEAIARLGAEGAVA 210
Query: 285 VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 344
P L+ ++ +RV+ G +V + ++G +QDE A LV ++ P+PG +VD CA
Sbjct: 211 RPAALA---EDGLRVQ-GQIDVTRLQAYRDGYVTIQDEGAMLVAPLLRPEPGMRVVDLCA 266
Query: 345 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNST 404
APGGKT ++A + +G + A D+ ++R + + A+ + SV R D R +
Sbjct: 267 APGGKTTHVAELMGDRGEIDAYDVTVAKVRAIRQQAERLGLQSV-RPRLGDGRQVQPEAL 325
Query: 405 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464
D L+DAPC+GLGV+ +R DLR+ RR ED+ +L LQ ELL A +V+ GG +VYS
Sbjct: 326 Y--DAALVDAPCTGLGVMRRRPDLRYRRRPEDVAKLAQLQRELLRRACAIVRSGGCVVYS 383
Query: 465 TCSIDPEENEERVEAFLLRHPEFSIDPADGL----VPSDFVT--------KHGFFFSDPI 512
TC++ EENE V E + DP+ G+ V D T + F P
Sbjct: 384 TCTLLKEENESVVR-------EVASDPSVGVRIEDVRCDLATPLAAMVGERSAGFLLWPN 436
Query: 513 KHSLDGAFAARLVR 526
H DG F ARL R
Sbjct: 437 WHETDGFFMARLRR 450
>gi|227904234|ref|ZP_04022039.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus
acidophilus ATCC 4796]
gi|227867882|gb|EEJ75303.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus
acidophilus ATCC 4796]
Length = 446
Score = 178 bits (452), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 149/478 (31%), Positives = 236/478 (49%), Gaps = 60/478 (12%)
Query: 61 RAVSAVRLMRIQFGGAFADL-LNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIV 119
RA+S L+++ G+++++ LN K S DL D L T IV
Sbjct: 11 RAISLETLIKVLGNGSYSNISLNNSLKNS-----------------DLAIADQNLATRIV 53
Query: 120 GGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRL 178
GTI++R +L++ + L + T ++PLLL + Y+I+ LD +P A++DE +L
Sbjct: 54 YGTIQYRIFLEYQLNGLIKTKLTEKYIKPLLL----MSLYQIIFLDKVPNRAILDEANKL 109
Query: 179 AKVALRPGAGN--LVNGILRKL----VLLKDNNSLPLPKLEGNDRAQARALATIYSHPVW 232
AK + + +VNGILR V+L D N+ + L+ S P W
Sbjct: 110 AKKFGKHHSSGYRIVNGILRSFIRRGVILPDKNN------------EIEYLSIKESVPEW 157
Query: 233 MVRRWTKYLGQEEAIKLMVWNNSDPSFSLRAN---SRKGVTRADLVMQLNLLKLQVPHEL 289
+V+ G E+ ++ N S+R + +K V N P+
Sbjct: 158 LVKYLISNWGIEKTKSVLSSINEPAKNSVRISMFSDKKKVFEELDNEGFN------PNWS 211
Query: 290 SLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVD--PQPGQSIVDCCAAPG 347
+L ++ + G V Q+ L K G +QDE+A LVV D + ++D C+APG
Sbjct: 212 NLSANDIVLDHGG---VSQSNLFKSGNLTIQDEAASLVVEAFDFDKDKPEHVLDACSAPG 268
Query: 348 GKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF-ADNSTVK 406
GKT+ +A G V A+DI++ +LR++ E AK V+ ++T D R A +
Sbjct: 269 GKTVQLAESFK-NGTVTALDIHEKKLRLVKENAKRMHVSDKVKTQACDAREAQARFDAGE 327
Query: 407 CDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTC 466
K+L+DAPCSGLG+L ++ ++R+ + L+D++ L+ +Q +LD+ SLL+ G LVYSTC
Sbjct: 328 FTKILVDAPCSGLGLLRRKPEIRYTKSLKDLKNLQKIQLAILDSVSLLLHVNGELVYSTC 387
Query: 467 SIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARL 524
SI EENE+ V+ FL H F + P S +K G P + DG F A+
Sbjct: 388 SISMEENEDVVKKFLQTHSNFELKP---FKLSKLESKTGMLKIMPDQDGNDGFFIAKF 442
>gi|183600721|ref|ZP_02962214.1| hypothetical protein PROSTU_04317 [Providencia stuartii ATCC 25827]
gi|188019701|gb|EDU57741.1| ribosomal RNA small subunit methyltransferase B [Providencia
stuartii ATCC 25827]
Length = 428
Score = 178 bits (452), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 129/418 (30%), Positives = 216/418 (51%), Gaps = 33/418 (7%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
K+++++D L+ +I G +R+ L+ + L EK + + L ++ +G Y+++
Sbjct: 34 KNINEKDKSLLQEICFGVLRYLPKLEWFVAQLM--EKPLTGKQRTLHYLIMVGIYQLLYT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+PP+A + E V A RP L+NG+LR L + N+ +Q
Sbjct: 92 RIPPHAALAETVNGAVALKRPQLKGLINGVLRSF----QRQQTQLEERNTNNSSQ----- 142
Query: 225 TIYSHPVWMVRRWTK-YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKL 283
Y HP W+++R Y + + I + NN P LR NS+ Q L +
Sbjct: 143 --YLHPSWLLKRLQNAYPDKWQTI--IDANNQRPPMWLRVNSQHHTAEQ---YQKYLEEN 195
Query: 284 QVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCC 343
++ EL H I++ +V + ++G VQD SA +++PQ ++I+D C
Sbjct: 196 EIASELHPHHPCAIKLSEPT-SVTRLPGFEKGWATVQDVSAQGCAELLEPQNHETILDLC 254
Query: 344 AAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNET-AKLHQVNSVIRTIHADLRTFADN 402
AAPGGKT ++ L+ + V A+DI++ RL+ + E +L Q +VI+ +A+
Sbjct: 255 AAPGGKTTHILE-LAPKAHVVAVDIDEHRLKRVKENLQRLQQQAAVIQGDGTKPEEWANG 313
Query: 403 STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLV 462
D++LLDAPCS GV+ + D++W RR D+ EL LQ ++L++ +K GG LV
Sbjct: 314 QLF--DRILLDAPCSATGVIRRHPDIKWLRRDSDINELTELQAKILESIWPYLKVGGTLV 371
Query: 463 YSTCSIDPEENEERVEAFLLRHPEFSIDPADG------LVPSDFVTKHGFFFSDPIKH 514
Y+TCSI PEEN +++ FL +HPE S++ DG ++PS GFF++ +K
Sbjct: 372 YATCSIMPEENSLQIKNFLAKHPEASLN--DGTTAGLQILPS-ITGGDGFFYARLVKQ 426
>gi|58337594|ref|YP_194179.1| rRNA methylase [Lactobacillus acidophilus NCFM]
gi|58254911|gb|AAV43148.1| rRNA methylase [Lactobacillus acidophilus NCFM]
Length = 455
Score = 178 bits (452), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 149/478 (31%), Positives = 236/478 (49%), Gaps = 60/478 (12%)
Query: 61 RAVSAVRLMRIQFGGAFADL-LNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIV 119
RA+S L+++ G+++++ LN K S DL D L T IV
Sbjct: 20 RAISLETLIKVLGNGSYSNISLNNSLKNS-----------------DLAIADQNLATRIV 62
Query: 120 GGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRL 178
GTI++R +L++ + L + T ++PLLL + Y+I+ LD +P A++DE +L
Sbjct: 63 YGTIQYRIFLEYQLNGLIKTKLTEKYIKPLLL----MSLYQIIFLDKVPNRAILDEANKL 118
Query: 179 AKVALRPGAGN--LVNGILRKL----VLLKDNNSLPLPKLEGNDRAQARALATIYSHPVW 232
AK + + +VNGILR V+L D N+ + L+ S P W
Sbjct: 119 AKKFGKHHSSGYRIVNGILRSFIRRGVILPDKNN------------EIEYLSIKESVPEW 166
Query: 233 MVRRWTKYLGQEEAIKLMVWNNSDPSFSLRAN---SRKGVTRADLVMQLNLLKLQVPHEL 289
+V+ G E+ ++ N S+R + +K V N P+
Sbjct: 167 LVKYLISNWGIEKTKSVLSSINEPAKNSVRISMFSDKKKVFEELDNEGFN------PNWS 220
Query: 290 SLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVD--PQPGQSIVDCCAAPG 347
+L ++ + G V Q+ L K G +QDE+A LVV D + ++D C+APG
Sbjct: 221 NLSANDIVLDHGG---VSQSNLFKSGNLTIQDEAASLVVEAFDFDKDKPEHVLDACSAPG 277
Query: 348 GKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF-ADNSTVK 406
GKT+ +A G V A+DI++ +LR++ E AK V+ ++T D R A +
Sbjct: 278 GKTVQLAESFKN-GTVTALDIHEKKLRLVKENAKRMHVSDKVKTQACDAREAQARFDAGE 336
Query: 407 CDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTC 466
K+L+DAPCSGLG+L ++ ++R+ + L+D++ L+ +Q +LD+ SLL+ G LVYSTC
Sbjct: 337 FTKILVDAPCSGLGLLRRKPEIRYTKSLKDLKNLQKIQLAILDSVSLLLHVNGELVYSTC 396
Query: 467 SIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARL 524
SI EENE+ V+ FL H F + P S +K G P + DG F A+
Sbjct: 397 SISMEENEDVVKKFLQTHSNFELKP---FKLSKLESKTGMLKIMPDQDGNDGFFIAKF 451
>gi|269140542|ref|YP_003297243.1| 16S rRNA methyltransferase B [Edwardsiella tarda EIB202]
gi|387869014|ref|YP_005700483.1| Ribosomal RNA small subunit methyltransferase B [Edwardsiella tarda
FL6-60]
gi|267986203|gb|ACY86032.1| 16S rRNA methyltransferase B [Edwardsiella tarda EIB202]
gi|304560327|gb|ADM42991.1| Ribosomal RNA small subunit methyltransferase B [Edwardsiella tarda
FL6-60]
Length = 430
Score = 178 bits (452), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 137/427 (32%), Positives = 222/427 (51%), Gaps = 33/427 (7%)
Query: 104 TKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVK 163
+ L D+D L+ ++ GT+R L+ ++ L K + + L +L +G Y+++
Sbjct: 34 AQPLSDKDRALLQELCFGTLRVLPQLEWIVQQLM--AKVLTGKQRPLHYLLLVGLYQLIY 91
Query: 164 LDMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARAL 223
+PP+A + E V A RP L+NG+LR+ + Q++
Sbjct: 92 TRIPPHAALAETVDGAVALKRPQLKGLINGVLRQFQRQQQPLL-----------LQSQQH 140
Query: 224 ATIYSHPVWMVRRWTK-YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLK 282
A+ + HP W+++R + Y Q ++I NN P LR N A L + L
Sbjct: 141 ASHWLHPSWLLKRLQQAYPEQWQSIADA--NNQRPPMWLRVNRCHHTRDAYLALLLQAGI 198
Query: 283 LQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 342
VPHE + +R++ Q V + ++G VQD SA V ++DPQ G+ I+D
Sbjct: 199 DAVPHET---FPDALRLQDP-QPVSRLPGFEQGWVTVQDASAQHSVDLLDPQDGEQILDL 254
Query: 343 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN 402
C APGGKT ++ + + V A+D+++ RL+ + E + Q ++ IR D RT +
Sbjct: 255 CCAPGGKTTHILEA-APKAHVLAVDVDESRLKRVRENLQRLQQHAEIRC--GDGRTPDEW 311
Query: 403 STVK-CDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVL 461
+ + D++LLDAPCS GV+ + D++W RR D+ EL LQ E++DA +K GGV+
Sbjct: 312 ARGRQFDRILLDAPCSATGVIRRHPDIKWLRRDSDIAELAALQREIIDAVWPFLKSGGVM 371
Query: 462 VYSTCSIDPEENEERVEAFLLRHPEFSI-DPADGLVPSDFVTKHGFFFSDPIKHSLDGAF 520
VY+TCSI P+EN+E++ AFL RHP+ + D D + + G F P + DG F
Sbjct: 372 VYATCSILPQENQEQILAFLSRHPDARLSDTGD-------IQRPGLQFL-PRPDAGDGFF 423
Query: 521 AARLVRA 527
A+L++A
Sbjct: 424 YAKLIKA 430
>gi|116333602|ref|YP_795129.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus brevis ATCC 367]
gi|116098949|gb|ABJ64098.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus brevis ATCC 367]
Length = 447
Score = 178 bits (452), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 129/436 (29%), Positives = 224/436 (51%), Gaps = 44/436 (10%)
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVG 120
RA++ L R+ GGA+++L +E+TL + L D D R VT++V
Sbjct: 8 RALAVEALTRVA-GGAYSNL--------------QLEQTL--ESHRLSDVDRRFVTNLVY 50
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLA 179
GTI+ + L++ + ++ + P + L + Y+ + LD +P A+ +E ++LA
Sbjct: 51 GTIQHQLTLEYYLSKFIKPQQ---KVLPWVKMTLMVALYQELYLDRVPKRAIFNEAIQLA 107
Query: 180 KVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQAR----ALATIYSHPVWMVR 235
K G V G+L + D LP D AQ + L+ YS P W++
Sbjct: 108 KDRGHEGIRRFVTGVLHAI----DRQGLP-------DLAQIKDPIERLSLQYSVPTWLIT 156
Query: 236 RWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDE 295
+ +G+++ ++++ N + S+RAN A P +++ +
Sbjct: 157 ALQEQVGEDKTMQILATINQPAAQSIRANVAVTTAEAVQAALAAEGYQVTPSQVAANA-- 214
Query: 296 FIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMAS 355
R+ N Q+ L +G +QDESA L V + +PG ++D CAAPGGKT +A+
Sbjct: 215 -FRLDDKAAN--QSALFADGAITIQDESAMLPVEALQLRPGDQVLDACAAPGGKTTQIAA 271
Query: 356 CLSGQ--GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVK-CDKVLL 412
L G V A+D+++ +++++ A+ V + + D R D K D++L+
Sbjct: 272 QLDAHSGGKVTALDLHEKKVKLIEANAERLHVTDRVDAVALDARKIDDQFPKKQFDRILV 331
Query: 413 DAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEE 472
DAPCSGLG++ ++ ++R+ + +D+++L+ +Q ++L+A S +KP G+LVYSTC+I E
Sbjct: 332 DAPCSGLGLIRRKPEIRYEKTPQDIQQLQRVQLDILNAVSKKLKPNGILVYSTCTILDTE 391
Query: 473 NEERVEAFLLRHPEFS 488
N+E V FL HPEFS
Sbjct: 392 NDEVVAQFLATHPEFS 407
>gi|160933495|ref|ZP_02080883.1| hypothetical protein CLOLEP_02341 [Clostridium leptum DSM 753]
gi|156867372|gb|EDO60744.1| ribosomal RNA small subunit methyltransferase B [Clostridium leptum
DSM 753]
Length = 446
Score = 178 bits (452), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 133/434 (30%), Positives = 214/434 (49%), Gaps = 50/434 (11%)
Query: 101 GFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYE 160
G LD RD + + G + R LD+ I + + S M + +ILR+GFY+
Sbjct: 32 GLAASGLDGRDAAFASALFYGVLERRITLDYQISR--YSKMPLSQMAAPVREILRLGFYQ 89
Query: 161 IVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQ 219
++ +D +P A V+E+V+L + + A VNGILR + +D LP +D
Sbjct: 90 LLYMDKVPQSAAVNESVKLTRAVKKDKASGFVNGILRSFI--RDGCPCRLPAETADD--- 144
Query: 220 ARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQL- 278
L Y+ P W++ W G+E A++L+ P ++R NS K TR L +L
Sbjct: 145 --YLMVKYACPQWIIDLWITSYGRERALELVENLTGRPPLAVRVNSCK-TTREALTERLK 201
Query: 279 --NLLKLQVPH-ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQP 335
+ +VP E +L L+ ++G ++ ++G VQD ++ L + P+P
Sbjct: 202 EEGVETKEVPGVEQALTLE-----RSG--SIESLSSFQDGFFHVQDLASQLCCQALSPKP 254
Query: 336 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAK---LHQVNSVIRTI 392
G+ + D CAAPGGKT MA + QG + + D+ +++++ + AK L VN+ IR
Sbjct: 255 GERVYDVCAAPGGKTFTMAELMENQGELSSFDLYPAKVKLIQQGAKRLGLSVVNARIRDA 314
Query: 393 HADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAAS 452
+ DKVL D PCSGLG++ ++ ++R+ + ++ L LQ +L ++
Sbjct: 315 -----AHPEEMLPPGDKVLCDVPCSGLGIIRRKPEIRYKNK-NMLDSLPDLQYLILCISA 368
Query: 453 LLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSD------------- 499
L K GVL+YSTC+++P EN + FLL HP+F P +P
Sbjct: 369 NLTKKHGVLLYSTCTLNPGENNQVARRFLLEHPDFEPYPVS--LPEGYERNSFDRENEAT 426
Query: 500 -FVTKH---GFFFS 509
FV K+ GFFFS
Sbjct: 427 LFVKKNGTDGFFFS 440
>gi|300861499|ref|ZP_07107583.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TUSoD Ef11]
gi|422740058|ref|ZP_16795215.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX2141]
gi|428768232|ref|YP_007154343.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis str. Symbioflor 1]
gi|295114431|emb|CBL33068.1| ribosomal RNA small subunit methyltransferase RsmB [Enterococcus
sp. 7L76]
gi|300848960|gb|EFK76713.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TUSoD Ef11]
gi|315144147|gb|EFT88163.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX2141]
gi|427186405|emb|CCO73629.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis str. Symbioflor 1]
Length = 459
Score = 178 bits (452), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 134/432 (31%), Positives = 227/432 (52%), Gaps = 37/432 (8%)
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVG 120
R V+ + R+ GGA+++LL NEM +L ++D RL T++V
Sbjct: 14 RYVALETIERVDKGGAYSNLLL--------NEM--------MTKSELSEKDGRLFTELVY 57
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLA 179
GTI + L++ + K ++ + +L + Y+++ LD +P +AV++E V +
Sbjct: 58 GTISRKLLLEYYLTPFV---KKPQKVDNWVKNLLILSLYQLLYLDKVPDHAVINEAVEIG 114
Query: 180 KVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGN-DRAQARALATIYSHPVWMVRRWT 238
K PG G VNG+LR + N + L + DR LAT S P W+ +
Sbjct: 115 KRRGNPGIGKFVNGVLRAF---QRNGAPSLAAISDPVDR-----LATEISMPRWLTEKLL 166
Query: 239 KYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFIR 298
LG+EE +L + S R N+R ++R + + +L + E L +
Sbjct: 167 AQLGEEETRQLGLSLFEKSHASGRVNTR-FISREEALEELQETGI-AAKESQLSPYGVVA 224
Query: 299 VKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLS 358
K L + L G +QDES+ LV + +P ++D CAAPGGKT ++A+ L
Sbjct: 225 EKGYLAG---SELFINGCLTIQDESSMLVAPAMQIEPHHCVLDACAAPGGKTTHIATFLE 281
Query: 359 GQ--GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKC-DKVLLDAP 415
+ G V ++DI+ +++++NE A+ V V++ D R A+ + D++L+DAP
Sbjct: 282 AEAGGRVTSLDIHAHKIKLINENAQRLHVADVVQAEKLDARQVAEEFPAETFDRILVDAP 341
Query: 416 CSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEE 475
CSGLG++ ++ D+++++ D + L +Q E+L++ + +K G++VYSTC+I PEEN+E
Sbjct: 342 CSGLGLMRRKPDIKYHKTANDFQNLPKIQLEILESVAPTLKQWGIMVYSTCTITPEENQE 401
Query: 476 RVEAFLLRHPEF 487
V AFL +HPEF
Sbjct: 402 VVAAFLAKHPEF 413
>gi|257080479|ref|ZP_05574840.1| ribosomal RNA small subunit methyltransferase [Enterococcus
faecalis E1Sol]
gi|256988509|gb|EEU75811.1| ribosomal RNA small subunit methyltransferase [Enterococcus
faecalis E1Sol]
Length = 459
Score = 178 bits (452), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 134/433 (30%), Positives = 227/433 (52%), Gaps = 37/433 (8%)
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVG 120
R V+ + R+ GGA+++LL NEM +L ++D RL T++V
Sbjct: 14 RYVALETIERVDKGGAYSNLLL--------NEM--------MTKSELSEKDGRLFTELVY 57
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLA 179
GTI + L++ + K ++ + +L + Y+++ LD +P +AV++E V +
Sbjct: 58 GTISRKLLLEYYLTPFV---KKPQKIDNWVKNLLILSLYQLLYLDKVPDHAVINEAVEIG 114
Query: 180 KVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGN-DRAQARALATIYSHPVWMVRRWT 238
K PG G VNG+LR + N + L + DR LAT S P W+ +
Sbjct: 115 KRRGNPGIGKFVNGVLRAF---QRNGAPSLAAISDPVDR-----LATEISMPRWLTEKLL 166
Query: 239 KYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFIR 298
LG+EE +L + S R N+R ++R + + +L + E L +
Sbjct: 167 AQLGEEETRQLGLSLFEKSHASGRVNTR-FISREEALEELQETGI-AAKESQLSPYGVVA 224
Query: 299 VKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLS 358
K L + L G +QDES+ LV + +P ++D CAAPGGKT ++A+ L
Sbjct: 225 EKGYLAG---SELFINGCLTIQDESSMLVAPAMQIEPHHRVLDACAAPGGKTTHIATFLE 281
Query: 359 GQ--GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKC-DKVLLDAP 415
+ G V ++DI+ +++++NE A+ V V++ D R A+ + D++L+DAP
Sbjct: 282 AEAGGRVTSLDIHAHKIKLINENAQRLHVADVVQAEKLDARQVAEEFPAETFDRILVDAP 341
Query: 416 CSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEE 475
CSGLG++ ++ D+++++ D + L +Q E+L++ + +K G++VYSTC+I PEEN+E
Sbjct: 342 CSGLGLMRRKPDIKYHKTANDFQNLPKIQLEILESVAPTLKQWGIMVYSTCTITPEENQE 401
Query: 476 RVEAFLLRHPEFS 488
V AFL +HPEF
Sbjct: 402 VVAAFLAKHPEFE 414
>gi|319790535|ref|YP_004152168.1| sun protein [Thermovibrio ammonificans HB-1]
gi|317115037|gb|ADU97527.1| sun protein [Thermovibrio ammonificans HB-1]
Length = 445
Score = 178 bits (452), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 123/383 (32%), Positives = 190/383 (49%), Gaps = 32/383 (8%)
Query: 104 TKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVK 163
T L ++ + ++V GT+R+ R LD + + +S +P + LR+ Y++
Sbjct: 32 TAALTPQERAFLRELVNGTVRFLRLLD--FSVERASGRRLASQKPTVRNALRLLAYQLFF 89
Query: 164 LDMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARA- 222
+PPYA ++E V + K L GA VN + +KL L N R + +
Sbjct: 90 TGVPPYAALNETVEVVKQRLGKGAAGFVNAVGKKL-------------LNFNYREEVESI 136
Query: 223 ------LATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVM 276
LAT++S WMV+RW + G E L+ N +R N + +
Sbjct: 137 KDPLERLATLHSFETWMVKRWESFYGPRELPHLLEGLNKVAPLFIRVN----LIKTQPQE 192
Query: 277 QLNLLK-LQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQP 335
LNLLK V E L E IR+K G N+ + KEGL +QD ++ L ++ P+P
Sbjct: 193 LLNLLKSAGVEAEPHPFLKEMIRIK-GRVNLPELPGFKEGLFYIQDPASYLAAYLLQPKP 251
Query: 336 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAK---LHQVNSVIRTI 392
G+ I+D AAPGGKT +AS + A+D+N+ R +L E + + VI I
Sbjct: 252 GELILDVGAAPGGKTTAIASLTGNGAKIVAVDVNRERAELLKENLRKLGVENTEVVITDI 311
Query: 393 HADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAAS 452
D F + K D++L+DAPCS GV+ + + +WN+ L ++ + +Q LL AA
Sbjct: 312 ARD-PNFLNRFRGKFDRILIDAPCSATGVIRRHPEGKWNKSLSLIKHNQTIQRSLLKAAK 370
Query: 453 LLVKPGGVLVYSTCSIDPEENEE 475
L+KP G L+YS CS++ EE EE
Sbjct: 371 ELLKPTGTLLYSVCSLEREEGEE 393
>gi|257417249|ref|ZP_05594243.1| fmu family protein [Enterococcus faecalis ARO1/DG]
gi|307292139|ref|ZP_07572005.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX0411]
gi|422696070|ref|ZP_16754047.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX4244]
gi|257159077|gb|EEU89037.1| fmu family protein [Enterococcus faecalis ARO1/DG]
gi|306496792|gb|EFM66343.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX0411]
gi|315146584|gb|EFT90600.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX4244]
Length = 459
Score = 178 bits (451), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 134/433 (30%), Positives = 227/433 (52%), Gaps = 37/433 (8%)
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVG 120
R V+ + R+ GGA+++LL NEM +L ++D RL T++V
Sbjct: 14 RYVALETIERVDKGGAYSNLLL--------NEM--------MTKSELSEKDGRLFTELVY 57
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLA 179
GTI + L++ + K ++ + +L + Y+++ LD +P +AV++E V +
Sbjct: 58 GTISRKLLLEYYLTPFV---KKPQKVDNWVRNLLILSLYQLLYLDKVPDHAVINEAVEIG 114
Query: 180 KVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGN-DRAQARALATIYSHPVWMVRRWT 238
K PG G VNG+LR + N + L + DR LAT S P W+ +
Sbjct: 115 KRRGNPGIGKFVNGVLRAF---QRNGAPSLAAISDPVDR-----LATEISMPRWLTEKLL 166
Query: 239 KYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFIR 298
LG+EE +L + S R N+R ++R + + +L + E L +
Sbjct: 167 AQLGEEETRQLGLSLFEKSHASGRVNTR-FISREEALEELQETGI-AAKESQLSPYGVVA 224
Query: 299 VKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLS 358
K L + L G +QDES+ LV + +P ++D CAAPGGKT ++A+ L
Sbjct: 225 EKGYLAG---SELFINGCLTIQDESSMLVAPAMQIEPHHRVLDACAAPGGKTTHIATFLE 281
Query: 359 GQ--GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKC-DKVLLDAP 415
+ G V ++DI+ +++++NE A+ V V++ D R A+ + D++L+DAP
Sbjct: 282 AEAGGRVTSLDIHAHKIKLINENAQRLHVADVVQAEKLDARQVAEEFPAETFDRILVDAP 341
Query: 416 CSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEE 475
CSGLG++ ++ D+++++ D + L +Q E+L++ + +K G++VYSTC+I PEEN+E
Sbjct: 342 CSGLGLMRRKPDIKYHKTANDFQNLPKIQLEILESVAPTLKQWGIMVYSTCTITPEENQE 401
Query: 476 RVEAFLLRHPEFS 488
V AFL +HPEF
Sbjct: 402 VVAAFLAKHPEFE 414
>gi|123968018|ref|YP_001008876.1| Sun protein (Fmu protein) [Prochlorococcus marinus str. AS9601]
gi|123198128|gb|ABM69769.1| Sun protein (Fmu protein) [Prochlorococcus marinus str. AS9601]
Length = 438
Score = 178 bits (451), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 127/426 (29%), Positives = 214/426 (50%), Gaps = 19/426 (4%)
Query: 87 GSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEK-TFSS 145
SGD +E+ L + + D+ +T++ G IR+R++LD H K T
Sbjct: 19 SSGDFSDHALEKVL--KNYQFNPLDIAFITELSFGCIRYRKFLD---LWTDHTSKITHKK 73
Query: 146 MEPLLLQILRIGFYEIVKLDMPPY-AVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDN 204
P L +L IG Y+++K+D P+ A + V +AK G VN ILR +
Sbjct: 74 QPPKLRWLLHIGLYQLLKMDKIPFPAAITTTVEVAKKTDLNGLAGTVNAILRNASRKLEQ 133
Query: 205 NSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRAN 264
P + +R ++ + S P+W+V+ K++G E ++ N PS LR N
Sbjct: 134 KIFPELSSDRKER-----ISYLESFPLWLVKDLYKWVGNSEGENIIRAFNKKPSIDLRIN 188
Query: 265 SRKGVTRADLVMQLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESA 324
K T D +++ L + ++ E+ L+ I +K+ +++ +GL +QD S+
Sbjct: 189 QLK--TNLDNFLKV-LHENKIDAEIINDLNNGITLKSNPRSIKNLPGYSDGLWTIQDRSS 245
Query: 325 GLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQ 384
+ +++P+ G+ I+D CAAPG K+ ++A + + A+D + RL+IL +
Sbjct: 246 QWIAPLLNPKEGEKILDACAAPGSKSTHLAELTNDSAEIIAVDRSAKRLKILQSNLERLN 305
Query: 385 VNSVIRTIHAD---LRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELK 441
+ SV T+ AD L DK+LLDAPCSG+G LS+ D RW+ E ++ L
Sbjct: 306 LKSV-NTLKADATRLIELNPKFISYFDKILLDAPCSGIGTLSRNPDSRWSLSKEKIKSLT 364
Query: 442 ILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFV 501
+LQ +LL++ L+K G LVYSTC+I P+EN +E F+ ++ + ++PS
Sbjct: 365 LLQGKLLESILPLLKKDGTLVYSTCTICPDENNLLIERFIEKNKTLKLVSQKQILPSLDY 424
Query: 502 TKHGFF 507
GF+
Sbjct: 425 PGDGFY 430
>gi|227517271|ref|ZP_03947320.1| RNA methyltransferase [Enterococcus faecalis TX0104]
gi|229548022|ref|ZP_04436747.1| RNA methyltransferase [Enterococcus faecalis ATCC 29200]
gi|255970686|ref|ZP_05421272.1| sun protein [Enterococcus faecalis T1]
gi|255974266|ref|ZP_05424852.1| sun protein [Enterococcus faecalis T2]
gi|256618123|ref|ZP_05474969.1| fmu family protein [Enterococcus faecalis ATCC 4200]
gi|256761053|ref|ZP_05501633.1| sun protein [Enterococcus faecalis T3]
gi|256854793|ref|ZP_05560157.1| sun protein [Enterococcus faecalis T8]
gi|256962961|ref|ZP_05567132.1| fmu [Enterococcus faecalis HIP11704]
gi|257083204|ref|ZP_05577565.1| conserved hypothetical protein [Enterococcus faecalis Fly1]
gi|257088233|ref|ZP_05582594.1| conserved hypothetical protein [Enterococcus faecalis D6]
gi|257091364|ref|ZP_05585725.1| SUN protein [Enterococcus faecalis CH188]
gi|307273621|ref|ZP_07554849.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX0855]
gi|307284853|ref|ZP_07565009.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX0860]
gi|307288887|ref|ZP_07568860.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX0109]
gi|312902128|ref|ZP_07761388.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX0470]
gi|312905428|ref|ZP_07764542.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX0635]
gi|312953217|ref|ZP_07772063.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX0102]
gi|384514350|ref|YP_005709443.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis OG1RF]
gi|384516917|ref|YP_005704222.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis 62]
gi|422687001|ref|ZP_16745191.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX4000]
gi|422689950|ref|ZP_16748040.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX0630]
gi|422692427|ref|ZP_16750448.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX0031]
gi|422700442|ref|ZP_16758289.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX1342]
gi|422704093|ref|ZP_16761908.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX1302]
gi|422720858|ref|ZP_16777465.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX0017]
gi|422723543|ref|ZP_16780078.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX2137]
gi|422725675|ref|ZP_16782133.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX0312]
gi|422728590|ref|ZP_16784998.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX0012]
gi|422732807|ref|ZP_16789136.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX0645]
gi|422736050|ref|ZP_16792315.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX1341]
gi|424674077|ref|ZP_18111003.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis 599]
gi|424677375|ref|ZP_18114227.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis ERV103]
gi|424681011|ref|ZP_18117807.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis ERV116]
gi|424685260|ref|ZP_18121960.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis ERV129]
gi|424688620|ref|ZP_18125225.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis ERV25]
gi|424690594|ref|ZP_18127126.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis ERV31]
gi|424694330|ref|ZP_18130733.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis ERV37]
gi|424697942|ref|ZP_18134254.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis ERV41]
gi|424701496|ref|ZP_18137668.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis ERV62]
gi|424704552|ref|ZP_18140647.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis ERV63]
gi|424711680|ref|ZP_18143892.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis ERV65]
gi|424716459|ref|ZP_18145770.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis ERV68]
gi|424721975|ref|ZP_18151042.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis ERV72]
gi|424724707|ref|ZP_18153645.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis ERV73]
gi|424727585|ref|ZP_18156214.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis ERV81]
gi|424744474|ref|ZP_18172768.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis ERV85]
gi|424753885|ref|ZP_18181814.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis ERV93]
gi|424759066|ref|ZP_18186739.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis R508]
gi|430360176|ref|ZP_19426153.1| ribosomal RNA small subunit methyltransferase [Enterococcus
faecalis OG1X]
gi|430366206|ref|ZP_19427387.1| ribosomal RNA small subunit methyltransferase [Enterococcus
faecalis M7]
gi|227075278|gb|EEI13241.1| RNA methyltransferase [Enterococcus faecalis TX0104]
gi|229306898|gb|EEN72894.1| RNA methyltransferase [Enterococcus faecalis ATCC 29200]
gi|255961704|gb|EET94180.1| sun protein [Enterococcus faecalis T1]
gi|255967138|gb|EET97760.1| sun protein [Enterococcus faecalis T2]
gi|256597650|gb|EEU16826.1| fmu family protein [Enterococcus faecalis ATCC 4200]
gi|256682304|gb|EEU21999.1| sun protein [Enterococcus faecalis T3]
gi|256710353|gb|EEU25397.1| sun protein [Enterococcus faecalis T8]
gi|256953457|gb|EEU70089.1| fmu [Enterococcus faecalis HIP11704]
gi|256991234|gb|EEU78536.1| conserved hypothetical protein [Enterococcus faecalis Fly1]
gi|256996263|gb|EEU83565.1| conserved hypothetical protein [Enterococcus faecalis D6]
gi|257000176|gb|EEU86696.1| SUN protein [Enterococcus faecalis CH188]
gi|306500159|gb|EFM69503.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX0109]
gi|306503112|gb|EFM72369.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX0860]
gi|306509634|gb|EFM78676.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX0855]
gi|310628834|gb|EFQ12117.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX0102]
gi|310631157|gb|EFQ14440.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX0635]
gi|311290792|gb|EFQ69348.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX0470]
gi|315026431|gb|EFT38363.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX2137]
gi|315028355|gb|EFT40287.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX4000]
gi|315031807|gb|EFT43739.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX0017]
gi|315150899|gb|EFT94915.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX0012]
gi|315152786|gb|EFT96802.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX0031]
gi|315159379|gb|EFU03396.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX0312]
gi|315161202|gb|EFU05219.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX0645]
gi|315164414|gb|EFU08431.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX1302]
gi|315167222|gb|EFU11239.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX1341]
gi|315171200|gb|EFU15217.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX1342]
gi|315577118|gb|EFU89309.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX0630]
gi|323479050|gb|ADX78489.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis 62]
gi|327536239|gb|AEA95073.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis OG1RF]
gi|402352021|gb|EJU86886.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis 599]
gi|402352398|gb|EJU87249.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis ERV116]
gi|402354668|gb|EJU89471.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis ERV103]
gi|402359241|gb|EJU93883.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis ERV129]
gi|402360079|gb|EJU94688.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis ERV25]
gi|402363792|gb|EJU98250.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis ERV31]
gi|402370986|gb|EJV05165.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis ERV37]
gi|402371527|gb|EJV05684.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis ERV62]
gi|402374178|gb|EJV08214.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis ERV41]
gi|402381574|gb|EJV15277.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis ERV63]
gi|402383112|gb|EJV16729.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis ERV65]
gi|402387976|gb|EJV21428.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis ERV68]
gi|402389889|gb|EJV23264.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis ERV72]
gi|402394127|gb|EJV27323.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis ERV73]
gi|402396200|gb|EJV29271.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis ERV81]
gi|402398874|gb|EJV31787.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis ERV85]
gi|402403411|gb|EJV36085.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis ERV93]
gi|402405242|gb|EJV37840.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis R508]
gi|429513088|gb|ELA02681.1| ribosomal RNA small subunit methyltransferase [Enterococcus
faecalis OG1X]
gi|429517220|gb|ELA06687.1| ribosomal RNA small subunit methyltransferase [Enterococcus
faecalis M7]
Length = 459
Score = 178 bits (451), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 134/433 (30%), Positives = 227/433 (52%), Gaps = 37/433 (8%)
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVG 120
R V+ + R+ GGA+++LL NEM +L ++D RL T++V
Sbjct: 14 RYVALETIERVDKGGAYSNLLL--------NEM--------MTKSELSEKDGRLFTELVY 57
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLA 179
GTI + L++ + K ++ + +L + Y+++ LD +P +AV++E V +
Sbjct: 58 GTISRKLLLEYYLTPFV---KKPQKVDNWVKNLLILSLYQLLYLDKVPDHAVINEAVEIG 114
Query: 180 KVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGN-DRAQARALATIYSHPVWMVRRWT 238
K PG G VNG+LR + N + L + DR LAT S P W+ +
Sbjct: 115 KRRGNPGIGKFVNGVLRAF---QRNGAPSLAAISDPVDR-----LATEISMPRWLTEKLL 166
Query: 239 KYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFIR 298
LG+EE +L + S R N+R ++R + + +L + E L +
Sbjct: 167 AQLGEEETRQLGLSLFEKSHASGRVNTR-FISREEALEELQETGI-AAKESQLSPYGVVA 224
Query: 299 VKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLS 358
K L + L G +QDES+ LV + +P ++D CAAPGGKT ++A+ L
Sbjct: 225 EKGYLAG---SELFINGCLTIQDESSMLVAPAMQIEPHHRVLDACAAPGGKTTHIATFLE 281
Query: 359 GQ--GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKC-DKVLLDAP 415
+ G V ++DI+ +++++NE A+ V V++ D R A+ + D++L+DAP
Sbjct: 282 AEAGGRVTSLDIHAHKIKLINENAQRLHVADVVQAEKLDARQVAEEFPAETFDRILVDAP 341
Query: 416 CSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEE 475
CSGLG++ ++ D+++++ D + L +Q E+L++ + +K G++VYSTC+I PEEN+E
Sbjct: 342 CSGLGLMRRKPDIKYHKTANDFQNLPKIQLEILESVAPTLKQWGIMVYSTCTITPEENQE 401
Query: 476 RVEAFLLRHPEFS 488
V AFL +HPEF
Sbjct: 402 VVAAFLAKHPEFE 414
>gi|268319212|ref|YP_003292868.1| rRNA methylase [Lactobacillus johnsonii FI9785]
gi|262397587|emb|CAX66601.1| rRNA methylase [Lactobacillus johnsonii FI9785]
Length = 440
Score = 178 bits (451), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 136/431 (31%), Positives = 226/431 (52%), Gaps = 38/431 (8%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD 165
DL D L T IV GTI+++ +L++ + L + S ++PLLL + Y+ L+
Sbjct: 34 DLKLADKALATRIVYGTIQYKIFLEYQLKPLIKTKLRDSFLKPLLL----MSAYQYFFLE 89
Query: 166 -MPPYAVVDENVRLAKVALRPGAGN--LVNGILRKLVLLKDNNSLPLPKLEGNDRAQARA 222
+P A+ DE +LAK + +G+ LVNGILR L + LP ND +
Sbjct: 90 KVPANAIFDEANKLAKKYSKRNSGSYKLVNGILR--ALERQGKILP----PTNDLVEY-- 141
Query: 223 LATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKG-VTRADLVMQLNLL 281
L+ S P W+V + G+ E +++V +N + S+R +++ ++ +
Sbjct: 142 LSIKESFPKWLVEYLLDHFGENETKEILVRSNQPAANSIRMTTKESDFEEIKEELKKDTF 201
Query: 282 KLQ----VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQ 337
+ PH L+L+ K G V Q L K G +QD +A L V D + +
Sbjct: 202 SFEESSLTPHNLNLN-------KGG---VAQTALFKNGKITIQDAAASLAVDAFDFKGSE 251
Query: 338 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR 397
++D C+APGGKT+ +A L+ G V A+DI++ +LR++ A+ V+ ++T D R
Sbjct: 252 QVLDACSAPGGKTVQIAENLT-TGSVIALDIHENKLRLVRNAAERLHVSDKVKTKALDAR 310
Query: 398 TFADN-STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVK 456
+ + + DK+L+DAPCSGLG++ ++ ++R+ + L D++ L +Q +L++ S L+
Sbjct: 311 KAKEYFNQGQFDKILVDAPCSGLGLIRRKPEIRYEKSLNDIKNLAKIQLAILESVSGLLA 370
Query: 457 PGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPAD-GLVPSDFVTKHGFFFSDPIKHS 515
GG LVYSTC+I EE+E V+ FL HP+F + P G +P + + F P
Sbjct: 371 NGGELVYSTCTISYEEDEGVVKQFLKLHPDFELMPVQVGKLPKQEMVR--IF---PSSDG 425
Query: 516 LDGAFAARLVR 526
DG F A+L +
Sbjct: 426 SDGFFIAKLKK 436
>gi|422020862|ref|ZP_16367388.1| 16S rRNA methyltransferase B [Providencia alcalifaciens Dmel2]
gi|414100357|gb|EKT61976.1| 16S rRNA methyltransferase B [Providencia alcalifaciens Dmel2]
Length = 428
Score = 178 bits (451), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 131/422 (31%), Positives = 218/422 (51%), Gaps = 39/422 (9%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
++++D+D L+ +I G +R+ L+ I L EK + + L ++ +G Y+++
Sbjct: 34 RNINDKDKALLQEICFGVLRYLPKLEWFISQLM--EKPLTGKQRTLHYLIMVGIYQLLYT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P +A + E V A RP L+NG+LR + + L + N+ +Q
Sbjct: 92 RIPAHAALAETVDGAVALKRPQLKGLINGVLRSFL----RQQVQLEERNTNNNSQ----- 142
Query: 225 TIYSHPVWMVRR-WTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVM--QLNLL 281
Y HP W+++R T Y E ++ NN P LR NS+ L + Q N+
Sbjct: 143 --YLHPSWLLKRIQTAY--PETWQNIVDANNQRPPMWLRVNSQHHTAEQYLALLEQANIT 198
Query: 282 KLQVP-HELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIV 340
P H ++ L+E +V + ++G VQD SA ++ P G++I+
Sbjct: 199 AYLHPSHPSAIRLEEAT-------SVTRLPGFEDGWSTVQDVSAQGCAELLSPINGENIL 251
Query: 341 DCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNET-AKLHQVNSVIRTIHADLRTF 399
D CAAPGGKT ++ L+ + V A+DI+ RL+ + E +L Q +VI+ +
Sbjct: 252 DLCAAPGGKTTHILE-LAPKAHVLAVDIDDARLKRVKENLQRLKQHATVIQGDGTKPEEW 310
Query: 400 ADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGG 459
A + D++LLDAPCS GV+ + D++W RR D++EL LQ ++L+A +KPGG
Sbjct: 311 AKDQLF--DRILLDAPCSATGVIRRHPDIKWLRRDSDIQELSQLQAQILEAVWSYLKPGG 368
Query: 460 VLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADG------LVPSDFVTKHGFFFSDPIK 513
LVY+TCSI PEEN ++++ FL +H + I+ DG ++PS GFF++ +K
Sbjct: 369 TLVYATCSIMPEENSQQIKHFLSKHVDARIN--DGTELGLQILPS-ATGGDGFFYARLLK 425
Query: 514 HS 515
+
Sbjct: 426 QA 427
>gi|229019063|ref|ZP_04175901.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
AH1273]
gi|228742231|gb|EEL92393.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
AH1273]
Length = 369
Score = 178 bits (451), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 116/341 (34%), Positives = 182/341 (53%), Gaps = 17/341 (4%)
Query: 153 ILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPK 211
+LR+ Y+++ LD +P A + E V +AK G +VNG+LR + +P
Sbjct: 2 LLRLSLYQMLYLDRVPERAAIHEAVEIAKRRGHKGISGMVNGVLRSI------QREGVPS 55
Query: 212 LEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTR 271
LE + LA SHP W+V+ W G E A K+ N P + R N K
Sbjct: 56 LE-EIKDPVERLAITTSHPAWLVQDWVSEYGLETAGKMCEVNMLPPVPTARVNVDKVTVE 114
Query: 272 ADLVMQLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVV 331
+ + N +LS D+ I+++ G NV K+G ++QDES+ LV +
Sbjct: 115 EAIGLLANEGIEAKRGDLS---DDAIQIERG--NVAHTEAFKKGFLSIQDESSMLVARAL 169
Query: 332 DPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETA-KLHQVNSVIR 390
+P G ++D CAAPGGKT ++A L G G V ++D++ ++R++ + A +L N +
Sbjct: 170 EPNEGDEVLDSCAAPGGKTTHIAERLKGTGKVMSLDLHAHKVRLIRQQADRLGLENVETK 229
Query: 391 TIHA-DLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLD 449
+ A ++ +N T DK+L+DAPCSG GV+ ++ D++ + D E L +Q +L+
Sbjct: 230 ALDARKVQEHFENETF--DKILVDAPCSGFGVIRRKPDIKLGKDKGDSERLSTIQFAILE 287
Query: 450 AASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSID 490
+ L+K GG LVYSTC+I+ ENE+ +E FL HPEF D
Sbjct: 288 KIAPLLKQGGRLVYSTCTIEKIENEQVIERFLQEHPEFEWD 328
>gi|254556524|ref|YP_003062941.1| rRNA methylase () [Lactobacillus plantarum JDM1]
gi|254045451|gb|ACT62244.1| rRNA methylase (putative) [Lactobacillus plantarum JDM1]
Length = 447
Score = 178 bits (451), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 124/425 (29%), Positives = 216/425 (50%), Gaps = 25/425 (5%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDH-LICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD 165
+D RD+ L+T++V G I+ R L++ L + H + ++P + ++L Y+ LD
Sbjct: 38 MDRRDINLLTNMVYGVIQHRLTLEYWLTPFVRHPHQ----IDPWVRELLLSALYQWQYLD 93
Query: 166 -MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P AV +E + +AKV PG V G+L ++ + LP + R L+
Sbjct: 94 KIPQRAVFNETIEIAKVKGHPGIRRFVTGVLHQM------DRSGLPSFDAIKDPDER-LS 146
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQ 284
YS P+W+++ + LG E+ +++ N +LR N + +N
Sbjct: 147 VTYSMPIWLIQELRRQLGAEKMERILSSLNQPAKQALRVNPALSTVEDVTTVLINDGLTI 206
Query: 285 VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 344
P E+S + T Q I ++ G+ VQDESA LVV ++ QP ++D CA
Sbjct: 207 TPSEIS----PLGLIATDGQ-AINTEAMRYGMFTVQDESAQLVVPALNLQPSDRVLDACA 261
Query: 345 APGGKTLYMASCLSGQ--GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN 402
APGGKT +A+ L + G V A+DI+ +++++ + A V + D R
Sbjct: 262 APGGKTTQIAASLDAEQGGTVVALDIHANKVKLIGQNAARMHVADRVEATELDARKVETQ 321
Query: 403 STVKC-DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVL 461
+ D++L+DAPCSGLG++ ++ ++R+ ++L+D L+ +Q +L A + +K GG++
Sbjct: 322 FNAESFDRILVDAPCSGLGLMRRKPEIRYEKQLQDSLNLQRIQLAILTAVAPTLKKGGIM 381
Query: 462 VYSTCSIDPEENEERVEAFLLRHPEFSID--PADGLVPSDFVTKHGFFFSDPIKHSLDGA 519
YSTC+I +EN++ + FL HP+F + P + + +D K + D + DG
Sbjct: 382 TYSTCTILQQENQDVITKFLADHPDFELQTTPTERDLKTDRTEKTLSIYPD--DYLSDGF 439
Query: 520 FAARL 524
F A L
Sbjct: 440 FIACL 444
>gi|421452839|ref|ZP_15902195.1| 16S rRNA m(5)C methyltransferase [Streptococcus salivarius K12]
gi|400181148|gb|EJO15415.1| 16S rRNA m(5)C methyltransferase [Streptococcus salivarius K12]
Length = 443
Score = 178 bits (451), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 138/437 (31%), Positives = 225/437 (51%), Gaps = 59/437 (13%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L D+D LVT+IV GT+ + L+ ++ + D +EP + +L + Y++ LD
Sbjct: 43 LTDKDKALVTEIVYGTVARKITLEWVLAHVIEDR---DKLEPWVYDLLLLSLYQLAYLDK 99
Query: 166 MPPYAVVDENVRLAKV-ALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P +AVV++ V +AK + GA LVN +LRKL +S PLP R R +
Sbjct: 100 IPAHAVVNDAVSIAKNRGNKKGAEKLVNAVLRKL------SSQPLPDPSTIKRVNKR-YS 152
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQ 284
YS PVW+V++ G++ A+ + S +R + VT A
Sbjct: 153 VQYSLPVWLVKKLIDQYGEDRALAIF------QSLFVRNKASVRVTDAS----------- 195
Query: 285 VPHELSLHLDEFIRVKTGLQNVIQ-AGLL------------KEGLCAVQDESAGLVVAVV 331
HL+E +V+ GL+ KEGL +QDE++ LV +
Sbjct: 196 -------HLEEIAEATGAECSVLSPVGLVKSSGYFAGTDYFKEGLLTIQDETSQLVAPTL 248
Query: 332 DPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRT 391
+ + I+D CAAPGGKT++MAS L+ G V A+D+ +L ++ E A+ + ++T
Sbjct: 249 GIKGEEEILDACAAPGGKTVHMASYLTS-GHVTALDLYDHKLALIEENAQRLGLADKVKT 307
Query: 392 IHADL----RTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDEL 447
D + F +S DK+L+DAPCSG+G++ ++ D+++N+ L+D E LK +Q ++
Sbjct: 308 QKLDASQVHQVFPADS---FDKILVDAPCSGIGLIRRKPDIKYNKDLQDFESLKAVQLDI 364
Query: 448 LDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFF 507
L + ++ GG++ YSTC+I EEN+E ++AFL HP+F D P + +G
Sbjct: 365 LSSVCQTLRKGGIITYSTCTIIAEENQEVIQAFLESHPDFEQVALDH--PCKDIVVNGCL 422
Query: 508 FSDPIKHSLDGAFAARL 524
P ++ DG F A+L
Sbjct: 423 AITPEQYLTDGFFIAQL 439
>gi|229025307|ref|ZP_04181726.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
AH1272]
gi|228735998|gb|EEL86574.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
AH1272]
Length = 387
Score = 178 bits (451), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 117/341 (34%), Positives = 182/341 (53%), Gaps = 17/341 (4%)
Query: 153 ILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPK 211
+LR+ Y+++ LD +P A + E V +AK G +VNG+LR + +P
Sbjct: 20 LLRLSLYQMLYLDRVPERAAIHEAVEIAKRRGHKGISGMVNGVLRSI------QREGVPS 73
Query: 212 LEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTR 271
LE R LA SHP W+V+ W G E A K+ N P + R N K
Sbjct: 74 LEEIKDPVER-LAITTSHPAWLVQDWVSEYGLETAGKMCEVNMLPPVPTARVNVDKVTVE 132
Query: 272 ADLVMQLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVV 331
+ + N +LS D+ I+++ G NV K+G ++QDES+ LV +
Sbjct: 133 EAIGLLANEGIEAKRGDLS---DDAIQIERG--NVAHTEAFKKGFLSIQDESSMLVARAL 187
Query: 332 DPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETA-KLHQVNSVIR 390
+P G ++D CAAPGGKT ++A L G G V ++D++ ++R++ + A +L N +
Sbjct: 188 EPNEGDEVLDSCAAPGGKTTHIAERLKGTGKVMSLDLHAHKVRLIRQQADRLGLENVETK 247
Query: 391 TIHA-DLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLD 449
+ A ++ +N T DK+L+DAPCSG GV+ ++ D++ + D E L +Q +L+
Sbjct: 248 ALDARKVQEHFENETF--DKILVDAPCSGFGVIRRKPDIKLGKDKGDSERLSTIQFAILE 305
Query: 450 AASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSID 490
+ L+K GG LVYSTC+I+ ENE+ +E FL HPEF D
Sbjct: 306 KIAPLLKQGGRLVYSTCTIEKIENEQVIERFLQEHPEFEWD 346
>gi|45434953|gb|AAS60514.1| tRNA and rRNA cytosine-C5-methylases [Yersinia pestis biovar
Microtus str. 91001]
Length = 435
Score = 178 bits (451), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 135/420 (32%), Positives = 216/420 (51%), Gaps = 36/420 (8%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
K++ D+D L+ ++ GT+R L+ I L + + + + ++ +G Y+++
Sbjct: 40 KNISDKDRALLQELCFGTLRVLPQLEWCIQQLM--ARPMTGKQRVFHYLIMVGLYQLIYT 97
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+PP+A + E V A V RP L+NG+LR+ + L + ND
Sbjct: 98 RIPPHAALAETVEGATVLKRPQLKGLINGVLRQF---QRQQVELLERAVNND-------- 146
Query: 225 TIYSHPVWMVRRWTK-YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKL 283
+ Y HP W++ R + Y Q + I + NN P LR N R +R++ + L +
Sbjct: 147 SHYLHPSWLLARIKQAYPAQWQQI--LDANNQRPPMWLRVN-RLHHSRSEYLELLTQADI 203
Query: 284 QV-PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 342
PH + + +R+ T V + G VQD SA V ++DPQ G+ I+D
Sbjct: 204 NAEPHPI---YRDAVRLITPC-AVNHLPGFELGWVTVQDASAQGCVDLLDPQNGEQILDL 259
Query: 343 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR---TF 399
CAAPGGKT ++ + + V A+DI++ RL + E + Q+ +V+R D R T+
Sbjct: 260 CAAPGGKTTHILEA-APKAHVLAVDIDEQRLSRVKENLQRLQLQAVVRV--GDGRAPDTW 316
Query: 400 ADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGG 459
+ + D++LLDAPCS GV+ + D++W RR D+ EL LQ E+++A +K GG
Sbjct: 317 CGDQ--QFDRILLDAPCSATGVIRRHPDIKWLRRDRDISELAQLQSEIIEAIWPKLKHGG 374
Query: 460 VLVYSTCSIDPEENEERVEAFLLRHPEFSI-DPADGLVPSDFVTKH-----GFFFSDPIK 513
VLVY+TCSI PEEN++++ AFL RHPE + + P H GFF++ IK
Sbjct: 375 VLVYATCSILPEENQQQIAAFLQRHPEAQLTETGTTAAPGKQNLPHPEDGDGFFYAKIIK 434
>gi|256960468|ref|ZP_05564639.1| fmu [Enterococcus faecalis Merz96]
gi|293385126|ref|ZP_06630952.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis R712]
gi|293389099|ref|ZP_06633571.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis S613]
gi|312906690|ref|ZP_07765690.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis DAPTO 512]
gi|312910848|ref|ZP_07769684.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis DAPTO 516]
gi|256950964|gb|EEU67596.1| fmu [Enterococcus faecalis Merz96]
gi|291077603|gb|EFE14967.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis R712]
gi|291081567|gb|EFE18530.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis S613]
gi|310627338|gb|EFQ10621.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis DAPTO 512]
gi|311288871|gb|EFQ67427.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis DAPTO 516]
Length = 459
Score = 178 bits (451), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 134/433 (30%), Positives = 227/433 (52%), Gaps = 37/433 (8%)
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVG 120
R V+ + R+ GGA+++LL NEM +L ++D RL T++V
Sbjct: 14 RYVALETIERVDKGGAYSNLLL--------NEM--------MTKSELSEKDGRLFTELVY 57
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLA 179
GTI + L++ + K ++ + +L + Y+++ LD +P +AV++E V +
Sbjct: 58 GTISRKLLLEYYLTPFV---KKPQRVDNWVKNLLILSLYQLLYLDKVPDHAVINEAVEIG 114
Query: 180 KVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGN-DRAQARALATIYSHPVWMVRRWT 238
K PG G VNG+LR + N + L + DR LAT S P W+ +
Sbjct: 115 KRRGNPGIGKFVNGVLRAF---QRNGAPSLAAISDPVDR-----LATEISMPRWLTEKLL 166
Query: 239 KYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFIR 298
LG+EE +L + S R N+R ++R + + +L + E L +
Sbjct: 167 AQLGEEETRQLGLSLFEKSHASGRVNTR-FISREEALEELQETGI-AAKESQLSPYGVVA 224
Query: 299 VKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLS 358
K L + L G +QDES+ LV + +P ++D CAAPGGKT ++A+ L
Sbjct: 225 EKGYLAG---SELFINGCLTIQDESSMLVAPAMQIEPHHRVLDACAAPGGKTTHIATFLE 281
Query: 359 GQ--GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKC-DKVLLDAP 415
+ G V ++DI+ +++++NE A+ V V++ D R A+ + D++L+DAP
Sbjct: 282 AEAGGRVTSLDIHAHKIKLINENAQRLHVADVVQAEKLDARQVAEEFPAETFDRILVDAP 341
Query: 416 CSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEE 475
CSGLG++ ++ D+++++ D + L +Q E+L++ + +K G++VYSTC+I PEEN+E
Sbjct: 342 CSGLGLMRRKPDIKYHKTANDFQNLPKIQLEILESVAPTLKQWGIMVYSTCTITPEENQE 401
Query: 476 RVEAFLLRHPEFS 488
V AFL +HPEF
Sbjct: 402 VVAAFLAKHPEFE 414
>gi|94994842|ref|YP_602940.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus pyogenes
MGAS10750]
gi|94548350|gb|ABF38396.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus pyogenes
MGAS10750]
Length = 440
Score = 178 bits (451), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 133/433 (30%), Positives = 220/433 (50%), Gaps = 41/433 (9%)
Query: 104 TKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVK 163
+K L +D L+T+IV GT+ + L+ L H K ++ + +L + Y+++
Sbjct: 37 SKALSAKDRALLTEIVYGTVSRKISLE---WYLAHYVKDRDKLDKWVYYLLMLSLYQLIY 93
Query: 164 LD-MPPYAVVDENVRLAKV-ALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQAR 221
LD +P +A+V++ V +AK + GA VN ILR+ S PLP +E R + +
Sbjct: 94 LDKLPAHAIVNDAVGIAKNRGNKKGAEKFVNAILRQFT------SHPLPDMETIKR-RNK 146
Query: 222 ALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLL 281
+ YS PVW+V++ G + A+ +M S +R+ + VT + L
Sbjct: 147 YYSVKYSLPVWLVKKLEDQFGSDRAVAIM------ESLFMRSKASTRVT--------DPL 192
Query: 282 KLQVPHELSLHLDEFIRVKTGLQ----NVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQ 337
KL+ E +L + + TGL + + G +QDES+ LV ++
Sbjct: 193 KLEEVAE-ALDAERSLLSATGLTKASGHFAASDYFTNGDITIQDESSQLVAPTLNIDGDD 251
Query: 338 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR 397
I+D C+APGGKT ++AS L G V A+D+ +L ++ E A V I T D R
Sbjct: 252 IILDACSAPGGKTSHIASYLK-TGKVIALDLYDHKLELVKENANRLGVADNIETRKLDAR 310
Query: 398 T----FADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASL 453
F +S DK+L+DAPCSG+G++ ++ D+++N+ +D L+ +Q E+L +
Sbjct: 311 EVHRHFEKDS---FDKILVDAPCSGIGLIRRKPDIKYNKESQDFNALQAIQLEILSSVCQ 367
Query: 454 LVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIK 513
++ GG++ YSTC+I EEN + +EAFL HP F + +D V K G+ P +
Sbjct: 368 TLRKGGIITYSTCTIFDEENRQVIEAFLQSHPNFEQVKLNH-TQADIV-KDGYLIITPEQ 425
Query: 514 HSLDGAFAARLVR 526
+ DG F ++ R
Sbjct: 426 YQTDGFFIGQVRR 438
>gi|229098334|ref|ZP_04229281.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
Rock3-29]
gi|229117351|ref|ZP_04246729.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
Rock1-3]
gi|228666251|gb|EEL21715.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
Rock1-3]
gi|228685232|gb|EEL39163.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
Rock3-29]
Length = 354
Score = 177 bits (450), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 115/328 (35%), Positives = 179/328 (54%), Gaps = 18/328 (5%)
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKL-EGNDRAQARALA 224
MP A + E V +AK G +VNG+LR + +P L E D + A+A
Sbjct: 1 MPERAAIHEAVEIAKRRGHKGISGMVNGVLRSI------QREGVPSLDEIKDPVERLAIA 54
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQ 284
T SHPVW+V+ W G E A K+ N P + R N V + + + LL +
Sbjct: 55 T--SHPVWLVQDWASEYGLETAEKMCEVNMLPPVPTARVN----VDKVTVEEAIELLASE 108
Query: 285 VPHELSLHL-DEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCC 343
S L D+ I+++ G NV K+G ++QDES+ LV +DP G++++D C
Sbjct: 109 GIEAKSGDLSDDAIQIERG--NVAHTEAFKKGFLSIQDESSMLVARALDPNEGETVLDSC 166
Query: 344 AAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN- 402
AAPGGKT ++A L G G V ++D++ ++R++ + A+ + + I T D R ++
Sbjct: 167 AAPGGKTTHIAERLKGTGKVMSLDLHAHKVRLIKQQAERLGLEN-IETKALDARKVQEHF 225
Query: 403 STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLV 462
+ DK+L+DAPCSG GV+ ++ D++ + D E L +Q +L+ + L+K GG LV
Sbjct: 226 ANETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSERLSTIQLAILEKIAPLLKQGGRLV 285
Query: 463 YSTCSIDPEENEERVEAFLLRHPEFSID 490
YSTC+I+ ENE+ ++ FL HPEF D
Sbjct: 286 YSTCTIEKIENEQVIDKFLKEHPEFEWD 313
>gi|22127891|ref|NP_671314.1| 16S rRNA methyltransferase GidB [Yersinia pestis KIM10+]
gi|51597957|ref|YP_072148.1| 16S rRNA methyltransferase GidB [Yersinia pseudotuberculosis IP
32953]
gi|108809224|ref|YP_653140.1| 16S rRNA methyltransferase B [Yersinia pestis Antiqua]
gi|108813989|ref|YP_649756.1| 16S rRNA methyltransferase B [Yersinia pestis Nepal516]
gi|145597481|ref|YP_001161556.1| 16S rRNA methyltransferase B [Yersinia pestis Pestoides F]
gi|150260712|ref|ZP_01917440.1| 16S rRNA m5C967 methyltransferase [Yersinia pestis CA88-4125]
gi|153947745|ref|YP_001402832.1| 16S rRNA methyltransferase B [Yersinia pseudotuberculosis IP 31758]
gi|161511468|ref|NP_991637.2| 16S rRNA methyltransferase GidB [Yersinia pestis biovar Microtus
str. 91001]
gi|165927896|ref|ZP_02223728.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
biovar Orientalis str. F1991016]
gi|166010534|ref|ZP_02231432.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
biovar Antiqua str. E1979001]
gi|167468244|ref|ZP_02332948.1| 16S rRNA methyltransferase B [Yersinia pestis FV-1]
gi|170022575|ref|YP_001719080.1| 16S rRNA methyltransferase B [Yersinia pseudotuberculosis YPIII]
gi|186897153|ref|YP_001874265.1| 16S rRNA methyltransferase B [Yersinia pseudotuberculosis PB1/+]
gi|218927446|ref|YP_002345321.1| 16S rRNA methyltransferase GidB [Yersinia pestis CO92]
gi|229836278|ref|ZP_04456445.1| 16S rRNA m5C967 methyltransferase [Yersinia pestis Pestoides A]
gi|229840098|ref|ZP_04460257.1| 16S rRNA m5C967 methyltransferase [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229842180|ref|ZP_04462335.1| 16S rRNA m5C967 methyltransferase [Yersinia pestis biovar
Orientalis str. India 195]
gi|229904520|ref|ZP_04519631.1| 16S rRNA m5C967 methyltransferase [Yersinia pestis Nepal516]
gi|384137783|ref|YP_005520485.1| 16S rRNA methyltransferase B [Yersinia pestis A1122]
gi|384412869|ref|YP_005622231.1| 16S rRNA methyltransferase B [Yersinia pestis biovar Medievalis
str. Harbin 35]
gi|420544668|ref|ZP_15042874.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-01]
gi|420549966|ref|ZP_15047612.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-02]
gi|420555423|ref|ZP_15052467.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-03]
gi|420561069|ref|ZP_15057380.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-04]
gi|420566104|ref|ZP_15061921.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-05]
gi|420571725|ref|ZP_15067026.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-06]
gi|420577062|ref|ZP_15071849.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-07]
gi|420582425|ref|ZP_15076736.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-08]
gi|420587556|ref|ZP_15081374.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-09]
gi|420592870|ref|ZP_15086154.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-10]
gi|420598558|ref|ZP_15091254.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-11]
gi|420604095|ref|ZP_15096181.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-12]
gi|420609431|ref|ZP_15101031.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-13]
gi|420614675|ref|ZP_15105710.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-14]
gi|420620109|ref|ZP_15110441.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-15]
gi|420625176|ref|ZP_15115030.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-16]
gi|420630337|ref|ZP_15119720.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-19]
gi|420635467|ref|ZP_15124306.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-25]
gi|420641087|ref|ZP_15129371.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-29]
gi|420646224|ref|ZP_15134086.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-32]
gi|420651870|ref|ZP_15139142.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-34]
gi|420657290|ref|ZP_15144036.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-36]
gi|420662645|ref|ZP_15148813.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-42]
gi|420667636|ref|ZP_15153323.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-45]
gi|420672962|ref|ZP_15158167.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-46]
gi|420678457|ref|ZP_15163170.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-47]
gi|420683687|ref|ZP_15167872.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-48]
gi|420688852|ref|ZP_15172463.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-52]
gi|420694629|ref|ZP_15177518.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-53]
gi|420699899|ref|ZP_15182139.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-54]
gi|420706071|ref|ZP_15187007.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-55]
gi|420711362|ref|ZP_15191815.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-56]
gi|420716724|ref|ZP_15196573.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-58]
gi|420722375|ref|ZP_15201380.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-59]
gi|420728003|ref|ZP_15206376.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-60]
gi|420733127|ref|ZP_15210991.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-61]
gi|420738589|ref|ZP_15215927.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-63]
gi|420743830|ref|ZP_15220623.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-64]
gi|420749713|ref|ZP_15225556.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-65]
gi|420754755|ref|ZP_15230087.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-66]
gi|420760885|ref|ZP_15234944.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-71]
gi|420766044|ref|ZP_15239617.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-72]
gi|420771080|ref|ZP_15244122.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-76]
gi|420776425|ref|ZP_15248948.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-88]
gi|420781883|ref|ZP_15253739.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-89]
gi|420787340|ref|ZP_15258516.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-90]
gi|420792784|ref|ZP_15263423.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-91]
gi|420797914|ref|ZP_15268028.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-92]
gi|420803308|ref|ZP_15272884.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-93]
gi|420808486|ref|ZP_15277574.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-94]
gi|420814279|ref|ZP_15282752.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-95]
gi|420819406|ref|ZP_15287411.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-96]
gi|420824501|ref|ZP_15291961.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-98]
gi|420830323|ref|ZP_15297222.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-99]
gi|420835134|ref|ZP_15301557.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-100]
gi|420840260|ref|ZP_15306201.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-101]
gi|420845873|ref|ZP_15311283.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-102]
gi|420851196|ref|ZP_15316045.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-103]
gi|420856800|ref|ZP_15320755.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-113]
gi|421761664|ref|ZP_16198464.1| 16S rRNA methyltransferase B [Yersinia pestis INS]
gi|46396984|sp|Q8ZJ81.1|RSMB_YERPE RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|81638254|sp|Q664V2.1|RSMB_YERPS RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|122979388|sp|Q1C2X7.1|RSMB_YERPA RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|122979880|sp|Q1CCX4.1|RSMB_YERPN RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|224493292|sp|A7FNK4.1|RSMB_YERP3 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|224493293|sp|B2K506.1|RSMB_YERPB RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|224493294|sp|A4TH21.1|RSMB_YERPP RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|224493295|sp|B1JJH6.1|RSMB_YERPY RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|21961028|gb|AAM87565.1|AE014004_3 hypothetical protein y4021 [Yersinia pestis KIM10+]
gi|51591239|emb|CAH22905.1| conserved hypothetical protein [Yersinia pseudotuberculosis IP
32953]
gi|108777637|gb|ABG20156.1| hypothetical protein YPN_3829 [Yersinia pestis Nepal516]
gi|108781137|gb|ABG15195.1| hypothetical protein YPA_3233 [Yersinia pestis Antiqua]
gi|115346057|emb|CAL18923.1| conserved hypothetical protein [Yersinia pestis CO92]
gi|145209177|gb|ABP38584.1| hypothetical protein YPDSF_0162 [Yersinia pestis Pestoides F]
gi|149290120|gb|EDM40197.1| 16S rRNA m5C967 methyltransferase [Yersinia pestis CA88-4125]
gi|152959240|gb|ABS46701.1| ribosomal RNA small subunit methyltransferase B [Yersinia
pseudotuberculosis IP 31758]
gi|165920172|gb|EDR37473.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
biovar Orientalis str. F1991016]
gi|165990624|gb|EDR42925.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
biovar Antiqua str. E1979001]
gi|169749109|gb|ACA66627.1| sun protein [Yersinia pseudotuberculosis YPIII]
gi|186700179|gb|ACC90808.1| sun protein [Yersinia pseudotuberculosis PB1/+]
gi|229678638|gb|EEO74743.1| 16S rRNA m5C967 methyltransferase [Yersinia pestis Nepal516]
gi|229690490|gb|EEO82544.1| 16S rRNA m5C967 methyltransferase [Yersinia pestis biovar
Orientalis str. India 195]
gi|229696464|gb|EEO86511.1| 16S rRNA m5C967 methyltransferase [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229706346|gb|EEO92353.1| 16S rRNA m5C967 methyltransferase [Yersinia pestis Pestoides A]
gi|320013373|gb|ADV96944.1| 16S rRNA methyltransferase B [Yersinia pestis biovar Medievalis
str. Harbin 35]
gi|342852912|gb|AEL71465.1| 16S rRNA methyltransferase B [Yersinia pestis A1122]
gi|391433129|gb|EIQ94498.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-01]
gi|391434056|gb|EIQ95300.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-02]
gi|391436791|gb|EIQ97716.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-03]
gi|391449124|gb|EIR08873.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-04]
gi|391449705|gb|EIR09403.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-05]
gi|391451930|gb|EIR11386.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-06]
gi|391465073|gb|EIR23296.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-07]
gi|391466641|gb|EIR24697.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-08]
gi|391468789|gb|EIR26631.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-09]
gi|391482538|gb|EIR38980.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-10]
gi|391483086|gb|EIR39481.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-12]
gi|391483447|gb|EIR39806.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-11]
gi|391497329|gb|EIR52199.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-13]
gi|391498333|gb|EIR53114.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-15]
gi|391501871|gb|EIR56231.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-14]
gi|391512937|gb|EIR66209.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-16]
gi|391514595|gb|EIR67687.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-19]
gi|391516192|gb|EIR69109.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-25]
gi|391528546|gb|EIR80351.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-29]
gi|391531485|gb|EIR82977.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-34]
gi|391532642|gb|EIR84003.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-32]
gi|391545647|gb|EIR95713.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-36]
gi|391547340|gb|EIR97244.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-42]
gi|391548058|gb|EIR97894.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-45]
gi|391561705|gb|EIS10211.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-46]
gi|391562825|gb|EIS11203.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-47]
gi|391564902|gb|EIS13062.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-48]
gi|391577032|gb|EIS23505.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-52]
gi|391577905|gb|EIS24246.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-53]
gi|391589064|gb|EIS34005.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-55]
gi|391592618|gb|EIS37014.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-54]
gi|391593183|gb|EIS37515.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-56]
gi|391606017|gb|EIS48799.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-60]
gi|391608007|gb|EIS50545.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-58]
gi|391608700|gb|EIS51165.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-59]
gi|391620658|gb|EIS61791.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-61]
gi|391621568|gb|EIS62596.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-63]
gi|391629940|gb|EIS69782.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-64]
gi|391632105|gb|EIS71670.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-65]
gi|391643391|gb|EIS81568.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-71]
gi|391646143|gb|EIS83934.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-72]
gi|391649499|gb|EIS86880.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-66]
gi|391655941|gb|EIS92624.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-76]
gi|391662855|gb|EIS98753.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-88]
gi|391667903|gb|EIT03182.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-89]
gi|391669457|gb|EIT04587.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-90]
gi|391673084|gb|EIT07839.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-91]
gi|391687122|gb|EIT20468.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-93]
gi|391688708|gb|EIT21903.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-92]
gi|391690002|gb|EIT23078.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-94]
gi|391701249|gb|EIT33273.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-95]
gi|391704389|gb|EIT36051.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-96]
gi|391705044|gb|EIT36644.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-98]
gi|391715923|gb|EIT46422.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-99]
gi|391720697|gb|EIT50697.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-100]
gi|391721254|gb|EIT51208.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-101]
gi|391731700|gb|EIT60369.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-102]
gi|391734364|gb|EIT62627.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-103]
gi|391737532|gb|EIT65409.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
PY-113]
gi|411177986|gb|EKS47998.1| 16S rRNA methyltransferase B [Yersinia pestis INS]
Length = 429
Score = 177 bits (450), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 135/420 (32%), Positives = 216/420 (51%), Gaps = 36/420 (8%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
K++ D+D L+ ++ GT+R L+ I L + + + + ++ +G Y+++
Sbjct: 34 KNISDKDRALLQELCFGTLRVLPQLEWCIQQLM--ARPMTGKQRVFHYLIMVGLYQLIYT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+PP+A + E V A V RP L+NG+LR+ + L + ND
Sbjct: 92 RIPPHAALAETVEGATVLKRPQLKGLINGVLRQF---QRQQVELLERAVNND-------- 140
Query: 225 TIYSHPVWMVRRWTK-YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKL 283
+ Y HP W++ R + Y Q + I + NN P LR N R +R++ + L +
Sbjct: 141 SHYLHPSWLLARIKQAYPAQWQQI--LDANNQRPPMWLRVN-RLHHSRSEYLELLTQADI 197
Query: 284 QV-PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 342
PH + + +R+ T V + G VQD SA V ++DPQ G+ I+D
Sbjct: 198 NAEPHPI---YRDAVRLITPC-AVNHLPGFELGWVTVQDASAQGCVDLLDPQNGEQILDL 253
Query: 343 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR---TF 399
CAAPGGKT ++ + + V A+DI++ RL + E + Q+ +V+R D R T+
Sbjct: 254 CAAPGGKTTHILEA-APKAHVLAVDIDEQRLSRVKENLQRLQLQAVVRV--GDGRAPDTW 310
Query: 400 ADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGG 459
+ + D++LLDAPCS GV+ + D++W RR D+ EL LQ E+++A +K GG
Sbjct: 311 CGDQ--QFDRILLDAPCSATGVIRRHPDIKWLRRDRDISELAQLQSEIIEAIWPKLKHGG 368
Query: 460 VLVYSTCSIDPEENEERVEAFLLRHPEFSI-DPADGLVPSDFVTKH-----GFFFSDPIK 513
VLVY+TCSI PEEN++++ AFL RHPE + + P H GFF++ IK
Sbjct: 369 VLVYATCSILPEENQQQIAAFLQRHPEAQLTETGTTAAPGKQNLPHPEDGDGFFYAKIIK 428
>gi|229547453|ref|ZP_04436178.1| RNA methyltransferase [Enterococcus faecalis TX1322]
gi|229307485|gb|EEN73472.1| RNA methyltransferase [Enterococcus faecalis TX1322]
Length = 459
Score = 177 bits (450), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 134/432 (31%), Positives = 227/432 (52%), Gaps = 37/432 (8%)
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVG 120
R V+ + R+ GGA+++LL NEM +L ++D RL T++V
Sbjct: 14 RYVALETIERVDKGGAYSNLLL--------NEM--------MTKSELSEKDGRLFTELVY 57
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLA 179
GTI + L++ + K ++ + +L + Y+++ LD +P +AV++E V +
Sbjct: 58 GTISRKLLLEYYLTPFV---KKPQKVDNWVKNLLILSLYQLLYLDKVPDHAVINEAVEIG 114
Query: 180 KVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGN-DRAQARALATIYSHPVWMVRRWT 238
K PG G VNG+LR + N + L + DR LAT S P W+ +
Sbjct: 115 KRRGNPGIGKFVNGVLRAF---QRNGAPSLAAISDPVDR-----LATEISMPRWLTEKLL 166
Query: 239 KYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFIR 298
LG+EE +L + S R N+R ++R + + +L + E L +
Sbjct: 167 AQLGEEETRQLGLSLFEKSHASGRVNTR-FISREEALEELQETGI-AAKESQLSPYGVVA 224
Query: 299 VKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLS 358
K L + L G +QDES+ LV + +P ++D CAAPGGKT ++A+ L
Sbjct: 225 EKGYLAG---SELFINGCLTIQDESSMLVAPAMQIEPHHRVLDACAAPGGKTTHIATFLE 281
Query: 359 GQ--GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKC-DKVLLDAP 415
+ G V ++DI+ +++++NE A+ V V++ D R A+ + D++L+DAP
Sbjct: 282 AEAGGRVTSLDIHAHKIKLINENAQRLNVADVVQAEKLDARQVAEEFPAETFDRILVDAP 341
Query: 416 CSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEE 475
CSGLG++ ++ D+++++ D + L +Q E+L++ + +K G++VYSTC+I PEEN+E
Sbjct: 342 CSGLGLMRRKPDIKYHKTANDFQNLPKIQLEILESVAPTLKQWGIMVYSTCTITPEENQE 401
Query: 476 RVEAFLLRHPEF 487
V AFL +HPEF
Sbjct: 402 VVAAFLAKHPEF 413
>gi|29377578|ref|NP_816732.1| Sun protein [Enterococcus faecalis V583]
gi|227554542|ref|ZP_03984589.1| RNA methyltransferase [Enterococcus faecalis HH22]
gi|257417966|ref|ZP_05594960.1| SUN protein [Enterococcus faecalis T11]
gi|422713873|ref|ZP_16770621.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX0309A]
gi|422718502|ref|ZP_16775155.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX0309B]
gi|29345045|gb|AAO82802.1| Sun protein [Enterococcus faecalis V583]
gi|227176340|gb|EEI57312.1| RNA methyltransferase [Enterococcus faecalis HH22]
gi|257159794|gb|EEU89754.1| SUN protein [Enterococcus faecalis T11]
gi|315573270|gb|EFU85461.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX0309B]
gi|315581156|gb|EFU93347.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX0309A]
Length = 459
Score = 177 bits (450), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 134/432 (31%), Positives = 227/432 (52%), Gaps = 37/432 (8%)
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVG 120
R V+ + R+ GGA+++LL NEM +L ++D RL T++V
Sbjct: 14 RYVALETIERVDKGGAYSNLLL--------NEM--------MTKSELSEKDGRLFTELVY 57
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLA 179
GTI + L++ + K ++ + +L + Y+++ LD +P +AV++E V +
Sbjct: 58 GTISRKLLLEYYLTPFV---KKPQKVDNWVKNLLILSLYQLLYLDKVPDHAVINEAVEIG 114
Query: 180 KVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGN-DRAQARALATIYSHPVWMVRRWT 238
K PG G VNG+LR + N + L + DR LAT S P W+ +
Sbjct: 115 KRRGNPGIGKFVNGVLRAF---QRNGAPSLAAISDPVDR-----LATEISMPRWLTEKLL 166
Query: 239 KYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFIR 298
LG+EE +L + S R N+R ++R + + +L + E L +
Sbjct: 167 AQLGEEETRQLGLSLFEKSHASGRVNTR-FISREEALEELQETGI-AAKESQLSPYGVVA 224
Query: 299 VKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLS 358
K L + L G +QDES+ LV + +P ++D CAAPGGKT ++A+ L
Sbjct: 225 EKGYLAG---SELFINGCLTIQDESSMLVAPSMQIEPHHRVLDACAAPGGKTTHIATFLE 281
Query: 359 GQ--GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKC-DKVLLDAP 415
+ G V ++DI+ +++++NE A+ V V++ D R A+ + D++L+DAP
Sbjct: 282 AEAGGRVTSLDIHAHKIKLINENAQRLHVADVVQAEKLDARQVAEEFPAETFDRILVDAP 341
Query: 416 CSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEE 475
CSGLG++ ++ D+++++ D + L +Q E+L++ + +K G++VYSTC+I PEEN+E
Sbjct: 342 CSGLGLMRRKPDIKYHKTANDFQNLPKIQLEILESVAPTLKQWGIMVYSTCTITPEENQE 401
Query: 476 RVEAFLLRHPEF 487
V AFL +HPEF
Sbjct: 402 VVAAFLAKHPEF 413
>gi|392329767|ref|ZP_10274383.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus canis FSL
Z3-227]
gi|391419639|gb|EIQ82450.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus canis FSL
Z3-227]
Length = 440
Score = 177 bits (450), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 129/434 (29%), Positives = 219/434 (50%), Gaps = 45/434 (10%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
K + +D L+T+IV GTI + L+ + D ++ + +L I Y++V L
Sbjct: 38 KAVSAKDKALLTEIVYGTIARKMSLEWYLAHYIQDR---DKLDKWVYYLLMISLYQLVYL 94
Query: 165 D-MPPYAVVDENVRLAKV-ALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARA 222
D +P +AVV++ V +AK + GA VN ILR++ S PLP + R Q +
Sbjct: 95 DRLPAHAVVNDAVTIAKNRGNKKGAEKFVNAILRQVT------SQPLPDMATIKR-QNKY 147
Query: 223 LATIYSHPVWMVRRWTKYLGQEEAIKLM--VWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
+ YS PVW+V++ G A+ +M ++ + S + ++++ + L + +L
Sbjct: 148 YSIKYSLPVWLVKKLRDQFGTARAVAIMESLFVRNKASIRVVDSTKREMIGHALGAEFSL 207
Query: 281 LKLQVPHELSLHLDEFIRVKTGLQ----NVIQAGLLKEGLCAVQDESAGLVVAVVDPQPG 336
L TGL + + G +QDES+ LV + +
Sbjct: 208 LS-----------------STGLTKPSGHFAASDYFTNGDITIQDESSQLVAPTLSIEGE 250
Query: 337 QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADL 396
++I+D C+APGGKT +MAS L+ G + A+D+ +L ++ E A+ V I T D
Sbjct: 251 ETILDACSAPGGKTAHMASYLT-TGKIIALDLYDHKLDLVKENARRLGVADKIETKKLDA 309
Query: 397 R----TFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAAS 452
R F +S DK+L+DAPCSG+G++ ++ D+++N+ +D L+ +Q E+L +
Sbjct: 310 RGVHRYFEKDS---FDKILVDAPCSGIGLIRRKPDIKYNKESQDFNALQTIQLEILSSVC 366
Query: 453 LLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPI 512
++ GG++ YSTC+I EEN + +EAFL HP F + +D V K G+ P
Sbjct: 367 QTLRKGGIITYSTCTIFDEENRQVIEAFLQSHPNFEQVKLNH-TQADIV-KDGYLIITPE 424
Query: 513 KHSLDGAFAARLVR 526
++ DG F ++ R
Sbjct: 425 QYQTDGFFIGQVRR 438
>gi|448821134|ref|YP_007414296.1| 16S rRNA m(5)C 967 methyltransferase [Lactobacillus plantarum
ZJ316]
gi|448274631|gb|AGE39150.1| 16S rRNA m(5)C 967 methyltransferase [Lactobacillus plantarum
ZJ316]
Length = 447
Score = 177 bits (450), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 124/425 (29%), Positives = 216/425 (50%), Gaps = 25/425 (5%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDH-LICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD 165
+D RD+ L+T++V G I+ R L++ L + H + ++P + ++L Y+ LD
Sbjct: 38 MDRRDINLLTNMVYGVIQHRLTLEYWLTPFVRHPHQ----IDPWVRELLLSALYQWQYLD 93
Query: 166 -MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P AV +E + +AKV PG V G+L ++ + LP + R L+
Sbjct: 94 KIPQRAVFNETIEIAKVKGHPGIRRFVTGVLHQM------DRSGLPSFDAIKDPDER-LS 146
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQ 284
YS P+W+++ + LG E+ +++ N +LR N + +N
Sbjct: 147 VTYSMPIWLIQELRRQLGAEKMERILSSLNQPAKQALRVNPALSTVEDVTTVLINDGLTI 206
Query: 285 VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 344
P E+S + T Q I ++ G+ VQDESA LVV ++ QP ++D CA
Sbjct: 207 TPSEIS----PLGLIATDGQ-AINTEAMRYGMFIVQDESAQLVVPALNLQPSDRVLDACA 261
Query: 345 APGGKTLYMASCLSGQ--GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN 402
APGGKT +A+ L + G V A+DI+ +++++ + A V + D R
Sbjct: 262 APGGKTTQIAASLDAEQGGTVVALDIHANKVKLIGQNAARMHVADRVEATELDARKVETQ 321
Query: 403 STVKC-DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVL 461
+ D++L+DAPCSGLG++ ++ ++R+ ++L+D L+ +Q +L A + +K GG++
Sbjct: 322 FNAESFDRILVDAPCSGLGLMRRKPEIRYEKQLQDSLNLQRIQLAILTAVAPTLKKGGIM 381
Query: 462 VYSTCSIDPEENEERVEAFLLRHPEFSID--PADGLVPSDFVTKHGFFFSDPIKHSLDGA 519
YSTC+I +EN++ + FL HP+F + P + + +D K + D + DG
Sbjct: 382 TYSTCTILQQENQDVITKFLADHPDFELQTTPTERDLKTDRTEKTLSIYPD--DYLSDGF 439
Query: 520 FAARL 524
F A L
Sbjct: 440 FIACL 444
>gi|165936548|ref|ZP_02225116.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
biovar Orientalis str. IP275]
gi|166213307|ref|ZP_02239342.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
biovar Antiqua str. B42003004]
gi|167399475|ref|ZP_02304999.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
biovar Antiqua str. UG05-0454]
gi|167419402|ref|ZP_02311155.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
biovar Orientalis str. MG05-1020]
gi|167425618|ref|ZP_02317371.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
biovar Mediaevalis str. K1973002]
gi|270488262|ref|ZP_06205336.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
KIM D27]
gi|294502314|ref|YP_003566376.1| hypothetical protein YPZ3_0204 [Yersinia pestis Z176003]
gi|384120798|ref|YP_005503418.1| hypothetical protein YPD4_0206 [Yersinia pestis D106004]
gi|384124680|ref|YP_005507294.1| hypothetical protein YPD8_0211 [Yersinia pestis D182038]
gi|165915664|gb|EDR34273.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
biovar Orientalis str. IP275]
gi|166205605|gb|EDR50085.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
biovar Antiqua str. B42003004]
gi|166963396|gb|EDR59417.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
biovar Orientalis str. MG05-1020]
gi|167051979|gb|EDR63387.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
biovar Antiqua str. UG05-0454]
gi|167055308|gb|EDR65102.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
biovar Mediaevalis str. K1973002]
gi|262360394|gb|ACY57115.1| hypothetical protein YPD4_0206 [Yersinia pestis D106004]
gi|262364344|gb|ACY60901.1| hypothetical protein YPD8_0211 [Yersinia pestis D182038]
gi|270336766|gb|EFA47543.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
KIM D27]
gi|294352773|gb|ADE63114.1| hypothetical protein YPZ3_0204 [Yersinia pestis Z176003]
Length = 431
Score = 177 bits (450), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 135/420 (32%), Positives = 216/420 (51%), Gaps = 36/420 (8%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
K++ D+D L+ ++ GT+R L+ I L + + + + ++ +G Y+++
Sbjct: 36 KNISDKDRALLQELCFGTLRVLPQLEWCIQQLM--ARPMTGKQRVFHYLIMVGLYQLIYT 93
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+PP+A + E V A V RP L+NG+LR+ + L + ND
Sbjct: 94 RIPPHAALAETVEGATVLKRPQLKGLINGVLRQF---QRQQVELLERAVNND-------- 142
Query: 225 TIYSHPVWMVRRWTK-YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKL 283
+ Y HP W++ R + Y Q + I + NN P LR N R +R++ + L +
Sbjct: 143 SHYLHPSWLLARIKQAYPAQWQQI--LDANNQRPPMWLRVN-RLHHSRSEYLELLTQADI 199
Query: 284 QV-PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 342
PH + + +R+ T V + G VQD SA V ++DPQ G+ I+D
Sbjct: 200 NAEPHPI---YRDAVRLITPC-AVNHLPGFELGWVTVQDASAQGCVDLLDPQNGEQILDL 255
Query: 343 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR---TF 399
CAAPGGKT ++ + + V A+DI++ RL + E + Q+ +V+R D R T+
Sbjct: 256 CAAPGGKTTHILEA-APKAHVLAVDIDEQRLSRVKENLQRLQLQAVVRV--GDGRAPDTW 312
Query: 400 ADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGG 459
+ + D++LLDAPCS GV+ + D++W RR D+ EL LQ E+++A +K GG
Sbjct: 313 CGDQ--QFDRILLDAPCSATGVIRRHPDIKWLRRDRDISELAQLQSEIIEAIWPKLKHGG 370
Query: 460 VLVYSTCSIDPEENEERVEAFLLRHPEFSI-DPADGLVPSDFVTKH-----GFFFSDPIK 513
VLVY+TCSI PEEN++++ AFL RHPE + + P H GFF++ IK
Sbjct: 371 VLVYATCSILPEENQQQIAAFLQRHPEAQLTETGTTAAPGKQNLPHPEDGDGFFYAKIIK 430
>gi|257420431|ref|ZP_05597421.1| SUN protein [Enterococcus faecalis X98]
gi|422708017|ref|ZP_16765551.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX0043]
gi|257162255|gb|EEU92215.1| SUN protein [Enterococcus faecalis X98]
gi|315154707|gb|EFT98723.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX0043]
Length = 459
Score = 177 bits (450), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 134/433 (30%), Positives = 228/433 (52%), Gaps = 37/433 (8%)
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVG 120
R V+ + R+ GGA+++LL NEM +L ++D RL T++V
Sbjct: 14 RYVALETIERVDKGGAYSNLLL--------NEM--------MTKSELSEKDGRLFTELVY 57
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLA 179
GTI + L++ + K ++ + +L + Y+++ LD +P +AV++E V +
Sbjct: 58 GTISRKLLLEYYLTPFV---KKPQKVDNWVKNLLILSLYQLLYLDKVPDHAVINEAVEIG 114
Query: 180 KVALRPGAGNLVNGILRKLVLLKDNNSLPLPKL-EGNDRAQARALATIYSHPVWMVRRWT 238
K PG G VNG+LR + N + L + + DR LAT S P W+ +
Sbjct: 115 KRRGNPGIGKFVNGVLRAF---QRNGAPSLAAISDPVDR-----LATEISMPRWLTEKLL 166
Query: 239 KYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFIR 298
LG+EE +L + S R N+R ++R + + +L + E L +
Sbjct: 167 VQLGEEETRQLGLSLFEKSHASGRVNTR-FISREEALEELQETGI-AAKESQLSPYGVVA 224
Query: 299 VKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLS 358
K L + L G +QDES+ LV + +P ++D CAAPGGKT ++A+ L
Sbjct: 225 EKGYLAG---SELFINGCLTIQDESSMLVAPAMQIEPHHRVLDACAAPGGKTTHIATFLE 281
Query: 359 GQ--GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKC-DKVLLDAP 415
+ G V ++DI+ +++++NE A+ V V++ D R A+ + D++L+DAP
Sbjct: 282 AEAGGRVTSLDIHAHKIKLINENAQRLHVADVVQAEKLDARQVAEEFPAETFDRILVDAP 341
Query: 416 CSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEE 475
CSGLG++ ++ D+++++ D + L +Q E+L++ + +K G++VYSTC+I PEEN+E
Sbjct: 342 CSGLGLMRRKPDIKYHKTANDFQNLPKIQLEILESVAPTLKQWGIMVYSTCTITPEENQE 401
Query: 476 RVEAFLLRHPEFS 488
V AFL +HPEF
Sbjct: 402 VVAAFLAKHPEFE 414
>gi|307244450|ref|ZP_07526559.1| ribosomal RNA small subunit methyltransferase B [Peptostreptococcus
stomatis DSM 17678]
gi|306492143|gb|EFM64187.1| ribosomal RNA small subunit methyltransferase B [Peptostreptococcus
stomatis DSM 17678]
Length = 447
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 126/424 (29%), Positives = 223/424 (52%), Gaps = 19/424 (4%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
LDD+D VT++V G I +RYLD++I + + M+ + +LR+G Y++V +D
Sbjct: 34 LDDQDKGFVTELVYGIIEKKRYLDYMINKVS--KIKVRKMQHSVKLVLRMGVYQLVYMDG 91
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+ YA ++E+V + K L + + VN +LR N S L +++ LA
Sbjct: 92 VTDYAAINESVNIMK-KLDKRSASFVNAVLR-------NISRNLDEVKDISLNTVDKLAI 143
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANS---RKGVTRADLVMQL--NL 280
YS+ W+V K G E ++ + P+ LR N R G + LV Q+ +
Sbjct: 144 YYSYENWIVENLVKEYGFERTEAILRALSQKPNIYLRVNRTKLRPGQSMDYLVGQIIGRI 203
Query: 281 LKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIV 340
+ + L+E I+VK GL+++ + L +EG +VQD S+ LV V++P+ ++
Sbjct: 204 IDQGLEASRVEGLEEAIKVK-GLKSIDKHPLFREGYVSVQDISSILVAKVMNPKRESRVL 262
Query: 341 DCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 400
D CAAPGGK+ ++ + G + + DI +++++N A+ +N++ + D
Sbjct: 263 DLCAAPGGKSTHIGELMENTGHLISQDIFDHKIKLMNTYARRLGLNNMEARL-GDALVLN 321
Query: 401 DNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGV 460
D+ K D VL D PCSG+G++ ++ ++++ + E++ L LQ ++L+ AS +K GG+
Sbjct: 322 DDYIGKFDYVLCDVPCSGMGIVRRKPEIKYKKE-EEVLNLPDLQYQILENASSYLKEGGI 380
Query: 461 LVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAF 520
L+YSTC+I +EN E V+ FL H +F +D + + P ++ +DG F
Sbjct: 381 LIYSTCTIFRQENMEVVDRFLANHKDFDLDDLGSVKEFLGIGDKDLVKILPDRYEMDGFF 440
Query: 521 AARL 524
R+
Sbjct: 441 ICRM 444
>gi|417837315|ref|ZP_12483554.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
johnsonii pf01]
gi|338762510|gb|EGP13778.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
johnsonii pf01]
Length = 438
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 135/434 (31%), Positives = 228/434 (52%), Gaps = 44/434 (10%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD 165
DL D L T IV GTI+++ +L++ + L + S ++PLLL + Y+ L+
Sbjct: 34 DLKPADKALATRIVYGTIQYKIFLEYQLKPLIKTKLRDSFLKPLLL----MSAYQYFFLE 89
Query: 166 -MPPYAVVDENVRLAKVALRPGAGN--LVNGILRKLVLLKDNNSLPLPKLEGNDRAQARA 222
+P A+ DE +LAK + +G+ L+NGILR L + LP ND +
Sbjct: 90 KVPANAIFDEANKLAKKYSKRNSGSYKLINGILR--ALERQGEILP----PTNDLVEY-- 141
Query: 223 LATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKG--------VTRADL 274
L+ S P W+V + G+ + +++V +N + S+R +++ + + +
Sbjct: 142 LSIKESFPKWLVEYLLDHFGENKTKEILVRSNQPAANSIRMTTKESDFEEIKEELKKDNF 201
Query: 275 VMQLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQ 334
+ + L PH L+L+ K G V Q L K G +QD +A L V D +
Sbjct: 202 SFEESSL---TPHNLNLN-------KGG---VAQTALFKNGKITIQDAAASLAVDAFDFK 248
Query: 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHA 394
+ ++D C+APGGKT+ +A L+ G V A+DI++ +LR++ A+ V+ ++T
Sbjct: 249 GSEQVLDSCSAPGGKTVQIAENLT-TGSVIALDIHENKLRLVRNAAERLHVSDKVKTKAL 307
Query: 395 DLRTFADN-STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASL 453
D R + + + DK+L+DAPCSGLG++ ++ ++R+ + L D++ L +Q +L++ S
Sbjct: 308 DARKAKEYFNQGQFDKILVDAPCSGLGLIRRKPEIRYEKSLNDIKNLAKIQLAILESVSG 367
Query: 454 LVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPAD-GLVPSDFVTKHGFFFSDPI 512
L+ GG LVYSTC+I EE+E V+ FL HP+F + P G +P + + F P
Sbjct: 368 LLANGGELVYSTCTISYEEDEGVVKQFLKLHPDFELIPVQVGKLPKQEMVR--IF---PS 422
Query: 513 KHSLDGAFAARLVR 526
DG F A+L +
Sbjct: 423 SDGSDGFFIAKLKK 436
>gi|315924509|ref|ZP_07920730.1| RNA methyltransferase Sun [Pseudoramibacter alactolyticus ATCC
23263]
gi|315622213|gb|EFV02173.1| RNA methyltransferase Sun [Pseudoramibacter alactolyticus ATCC
23263]
Length = 440
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 141/462 (30%), Positives = 232/462 (50%), Gaps = 44/462 (9%)
Query: 68 LMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRR 127
L++I GAF++L E+ L F +D + L T +V G ++ +
Sbjct: 19 LLKIDREGAFSNL-----------EIRQTLSRLSFNAEDAN-----LYTLLVYGVLQNQI 62
Query: 128 YLDHLICLLCHDEK--TFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALR 184
+LD+ + L + K F + E ILRI Y+I+KLD +P YA V E V L R
Sbjct: 63 FLDYCLDQLIKEPKRVDFETRE-----ILRIAAYQILKLDRIPDYAAVSEAVLLCGKVNR 117
Query: 185 PGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQE 244
G VNG+LR L+ N + G+ R + LAT +S P+ +V + + G+E
Sbjct: 118 RAKG-FVNGVLRNLI---RNKTRLFDISNGSFRNEKEVLATRFSIPLPVVHYYFEAYGKE 173
Query: 245 EAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFIRVKTGLQ 304
A ++ N S+R N+ K ++R DL +L L V L D
Sbjct: 174 AAPAILAQMNVPAPLSVRVNTLK-LSREDLAAKLQAEGLAV-EVGQLSSDCLYLKGISAS 231
Query: 305 NVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVY 364
++Q+ K+G +QD+ A L+ ++DP+PG+ I+D CAAPGGKT ++A +S G +
Sbjct: 232 ELVQSCWFKDGWLTIQDQGAMLIAELLDPRPGERILDMCAAPGGKTTHLAQLMSDAGEII 291
Query: 365 AIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSK 424
A DI RL+++ + AK ++++ + ++ + + DK+LLDAPCSG GV+ +
Sbjct: 292 ARDIYPSRLQLIEDAAKRLGISNIKTELWDGIQPPKEEAAF--DKILLDAPCSGYGVIRR 349
Query: 425 RADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRH 484
+ ++R+ ED ++ Q LL+ L++ G LVY+TC+IDPEEN ++ A ++R
Sbjct: 350 KPEIRYRGTKEDRRAIRQTQRTLLNNGLDLLRSDGKLVYATCTIDPEENNRQI-ARVVRE 408
Query: 485 PEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARLVR 526
I A+ T+ + P+ DG + RL++
Sbjct: 409 RSDVIAEAE--------TER---MTSPLTDGCDGFYMIRLIK 439
>gi|307276657|ref|ZP_07557775.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX2134]
gi|306506767|gb|EFM75919.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX2134]
Length = 459
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 134/433 (30%), Positives = 227/433 (52%), Gaps = 37/433 (8%)
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVG 120
R V+ + R+ GGA+++LL NEM +L ++D RL T++V
Sbjct: 14 RYVALETIERVDKGGAYSNLLL--------NEM--------MTKSELSEKDGRLFTELVY 57
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLA 179
GTI + L++ + K ++ + +L + Y+++ LD +P +AV++E V +
Sbjct: 58 GTISRKLLLEYYLTPFV---KKPQKVDNWVKNLLILSLYQLLYLDKVPDHAVINEAVEIG 114
Query: 180 KVALRPGAGNLVNGILRKLVLLKDNNSLPLPKL-EGNDRAQARALATIYSHPVWMVRRWT 238
K PG G VNG+LR + N + L + + DR LAT S P W+ +
Sbjct: 115 KRRGNPGIGKFVNGVLRAF---QRNGAPSLAAISDPVDR-----LATEISMPRWLTEKLL 166
Query: 239 KYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFIR 298
LG+EE +L + S R N+R ++R + + +L + E L +
Sbjct: 167 AQLGEEETRQLGLSLFEKSHASGRVNTR-FISREEALEELQETGI-AAKESQLSPYGVVA 224
Query: 299 VKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLS 358
K L + L G +QDES+ LV + +P ++D CAAPGGKT ++A+ L
Sbjct: 225 EKGYLAG---SELFINGCLTIQDESSMLVAPAMQIEPHHRVLDACAAPGGKTTHIATFLE 281
Query: 359 GQ--GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKC-DKVLLDAP 415
+ G V ++DI+ +++++NE A+ V V++ D R A+ + D++L+DAP
Sbjct: 282 AEAGGRVTSLDIHAHKIKLINENAQRLHVADVVQAEKLDARQVAEEFPAETFDRILVDAP 341
Query: 416 CSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEE 475
CSGLG++ ++ D+++++ D + L +Q E+L+ + +K G++VYSTC+I PEEN+E
Sbjct: 342 CSGLGLMRRKPDIKYHKTANDFQNLPKIQLEILENVAPTLKQWGIMVYSTCTITPEENQE 401
Query: 476 RVEAFLLRHPEFS 488
V AFL +HPEF
Sbjct: 402 VVAAFLAKHPEFE 414
>gi|414160518|ref|ZP_11416784.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
simulans ACS-120-V-Sch1]
gi|410878038|gb|EKS25927.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
simulans ACS-120-V-Sch1]
Length = 434
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 125/426 (29%), Positives = 224/426 (52%), Gaps = 46/426 (10%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTF--SSMEPLLLQILRIGFY 159
+ +L D L+T++V GT++ + LD+ + K F + ++ + ++L + Y
Sbjct: 30 LKENELSRADKGLLTELVYGTLKHQYTLDYYL-------KPFVKTKIKGWMRRLLWMSIY 82
Query: 160 EIVKLD-MPPYAVVDENVRLAKVALRPGAGN--LVNGILRKLVLLKDNNSLPLPKLEGND 216
+ LD +P +A+++E V + K R G N +VNGILR ++ + LP P ND
Sbjct: 83 QYQYLDKIPDHAIINEAVEITK--QRGGLHNSKVVNGILRNMM----RSDLPNPADIEND 136
Query: 217 RAQARALATIYSHPVWMVRRWTKYLGQE--EAIKLMVWNNSDPSFSLRANSRKGVTRADL 274
+ + +A +YS P W+V+ W + G E EAI + P ++R N+ + T D
Sbjct: 137 QQR---IAIMYSLPKWIVKHWVTHFGLETTEAIAQSLLER--PGQTVRVNTHR-TTIEDA 190
Query: 275 VMQLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQ 334
+++L +V + +H + + V+++ K+G ++QD+S+ V ++ P
Sbjct: 191 IVRLEKEDYEVSQDKDIHY----CLHVSGRPVVESRAFKDGYVSIQDKSSMFVAEILAPV 246
Query: 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHA 394
G++I+D C+APGGK A L G G V A DI++ ++ ++ + ++ +V H
Sbjct: 247 EGENILDACSAPGGKACQTAELLKGSGHVDATDIHEHKIDLIEHNIRKLRLKNVTAFQHD 306
Query: 395 DLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLL 454
+ + K DK+L+DAPCSGLGVL + ++++ + E ++ L LQ E+++
Sbjct: 307 ATKPY----DAKYDKILVDAPCSGLGVLRHKPEIKYTQNPETVDGLVDLQLEIMNNIKDS 362
Query: 455 VKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADG-----------LVPSDFVTK 503
VKPGGV+VYSTC+I+ ENE + FL ++ +F +P ++P DF +
Sbjct: 363 VKPGGVIVYSTCTIEQMENENVIYTFLKQNKDFEFEPFPHPRTGEEVKTLQILPQDFDSD 422
Query: 504 HGFFFS 509
GFF +
Sbjct: 423 -GFFIT 427
>gi|295109189|emb|CBL23142.1| ribosomal RNA small subunit methyltransferase RsmB [Ruminococcus
obeum A2-162]
Length = 450
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 136/427 (31%), Positives = 216/427 (50%), Gaps = 37/427 (8%)
Query: 114 LVTDIVGGTIRWRRYLDHLICLLCHDEKTFSS-----MEPLLLQILRIGFYEIVKLD-MP 167
+T + GT+ +R +D++I +FS M+ + +ILR Y++ +D +P
Sbjct: 46 FITRVCEGTLEYRILIDYII-------NSFSKIPVDKMKAPIREILRSAIYQMKFMDRVP 98
Query: 168 PYAVVDENVRLAKVALRPGAGNL---VNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
AV +E V+LA+ + G NL VNG+LR + N L P E N R L+
Sbjct: 99 DSAVCNEAVKLAQ---KKGFYNLKPFVNGVLRTAA--RQMNELEYPSREEN---LVRYLS 150
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQ 284
YS P +V RW + G+E K++ + +R R + D + + LK Q
Sbjct: 151 VRYSMPEELVNRWLEDYGEEITEKMLADFLREKPVMIRC--RTYLNSVDKI--CDSLKSQ 206
Query: 285 -VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCC 343
V E + +L R+ +G +++ +G VQD S+ LV + +P G ++D C
Sbjct: 207 GVTVEPAPYLPYAKRI-SGYNHILALDAFIQGKILVQDVSSMLVAEIANPSRGDYVIDMC 265
Query: 344 AAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSV-IRTIHADLRTFADN 402
AAPGGK+L+M + G G V A DI++ ++ ++ E + + S+ ++ D F
Sbjct: 266 AAPGGKSLHMGDKMEGFGTVDARDISQYKVNLIEEN--IQRTGSINVQAKVQDATLFDVE 323
Query: 403 STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLV 462
S K D VL D PCSG GV+ K+ ++++ + +EL ILQ +LD A+ VKP GVL+
Sbjct: 324 SECKADIVLADVPCSGYGVIGKKPEIKYRSTAQKEDELVILQRTILDKAAEYVKPRGVLI 383
Query: 463 YSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDF---VTKHGFFFSDPIKHSLDGA 519
+STC+I EENEE + F+ HP F ++ D +P + T G+ P H DG
Sbjct: 384 FSTCTIAKEENEENMMWFMNNHP-FKLESIDDCIPEELRSETTALGYLQLLPGVHGTDGF 442
Query: 520 FAARLVR 526
F A+ R
Sbjct: 443 FIAKFRR 449
>gi|222151048|ref|YP_002560202.1| hypothetical protein MCCL_0799 [Macrococcus caseolyticus JCSC5402]
gi|222120171|dbj|BAH17506.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
Length = 434
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 134/468 (28%), Positives = 241/468 (51%), Gaps = 44/468 (9%)
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVG 120
R+V+ L + GA+++LL + + GYVE D L+T++V
Sbjct: 6 RSVALEILDAVLTEGAYSNLLINEAI-----KKGYVEPV-----------DRALLTELVY 49
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLA 179
GT++ + L+ ++++ + +++ + Y+ V LD +P +A+++E V +
Sbjct: 50 GTLQRKLTLEFYAAPYIK-----TNIKGWMRRLILMSIYQSVYLDKVPDHAIINEAVEIT 104
Query: 180 KVALRPGAGNLVNGILRKLVLLKDNNSLPLPKL-EGNDRAQARALATIYSHPVWMVRRWT 238
K G N VN ILR PL L E D + ++AT S P+W+++ W
Sbjct: 105 KRRGSMGGANTVNAILRNF------QRNPLRDLSEIKDDLKRLSVAT--STPLWLIKHWN 156
Query: 239 KYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFIR 298
+ G + +++ + P ++R N+ K +T D + +L V E S + E +
Sbjct: 157 THFGFDTTLEMAEEFLNYPDTTVRVNTTK-ITPEDAIKRLTEAGYTV--EQSEIIPECLT 213
Query: 299 VKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLS 358
+ ++Q L K G +VQD S+ LV V+DPQP ++I+D C+APGGK ++A ++
Sbjct: 214 IDG--PPIVQHELFKHGFLSVQDASSMLVANVLDPQPDETILDACSAPGGKACHIAEKMN 271
Query: 359 GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSG 418
G + + D++ ++ ++ + + +R IH + + D+VL+DAPCSG
Sbjct: 272 RTGHIDSHDVHPHKIDLI----QYNITRLSLRNIHPSVHDATIPYDKQYDRVLVDAPCSG 327
Query: 419 LGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVE 478
GV+ ++ ++++++ +D++ L LQ E+L A+ VKPGGVLVYSTC+I+ ENE V
Sbjct: 328 FGVMKRKPEIKYDKTQKDIDTLWPLQLEILKNAANAVKPGGVLVYSTCTIEQMENENVVY 387
Query: 479 AFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARLVR 526
+F+ ++ +F I+P + V + K P + DG F A+L R
Sbjct: 388 SFIKQNEDFEIEPIELPV----IGKQKLLQVLPQDFNSDGFFIAKLRR 431
>gi|390436441|ref|ZP_10224979.1| 16S rRNA methyltransferase B [Pantoea agglomerans IG1]
Length = 433
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 135/424 (31%), Positives = 213/424 (50%), Gaps = 40/424 (9%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
K L D+D LV +I G +R L+ LI L E+ + + +L ++ +G Y++
Sbjct: 34 KKLSDKDSALVQEICFGVLRTLPQLEALIGKLM--ERPLTGKQRVLHYLIMVGLYQLEYT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P +A + E V A+V R L+NG+LR+ R + LA
Sbjct: 92 RVPAHAALAETVAGAEVLKRTSMKGLLNGVLRQF-----------------QRQREELLA 134
Query: 225 TI------YSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQL 278
T+ Y HP W+++R ++ E+ +++ NN P LR N + L M
Sbjct: 135 TVQDGPQRYLHPGWLLKR-LQHAWPEQWQQIVEANNLRPPMWLRVNRQHHDRDTWLAMLA 193
Query: 279 NLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQS 338
+ P ++ + + +R+ V Q +G VQD SA +++PQ G+
Sbjct: 194 ESGRNAQP---TVDVPDALRLDAPA-PVSQLPGFDQGWVTVQDLSAQRCALLLEPQNGEQ 249
Query: 339 IVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT 398
I+D CAAPGGKT ++ ++ Q V A+D++ RL+ +NE L ++ D RT
Sbjct: 250 ILDLCAAPGGKTTHILE-IAPQAEVMAVDVDAQRLKRVNEN--LQRLGMKADVKQGDGRT 306
Query: 399 FAD-NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKP 457
+ D++LLDAPCS GV+ + D++W RR D+ EL LQ E+LDA L +KP
Sbjct: 307 PQQWCGDRQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAKLQGEILDAIWLHLKP 366
Query: 458 GGVLVYSTCSIDPEENEERVEAFLLRHPEFSID-----PADGL-VPSDFVTKHGFFFSDP 511
GG L+Y+TCSI PEEN ++++AFL R + + PA+GL V + GFF++
Sbjct: 367 GGTLIYATCSILPEENHQQIDAFLQRQHDAQAEPLRDAPANGLQVFPEAEGGDGFFYAKL 426
Query: 512 IKHS 515
IK S
Sbjct: 427 IKKS 430
>gi|385825620|ref|YP_005861962.1| RNA methylase [Lactobacillus johnsonii DPC 6026]
gi|329667064|gb|AEB93012.1| RNA methylase [Lactobacillus johnsonii DPC 6026]
Length = 434
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 135/433 (31%), Positives = 227/433 (52%), Gaps = 46/433 (10%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD 165
DL D L T IV GTI+++ +L++ + L + S ++PLLL + Y+ L+
Sbjct: 34 DLKPADKALATRIVYGTIQYKIFLEYQLKPLIKTKLRDSFLKPLLL----MSAYQYFFLE 89
Query: 166 -MPPYAVVDENVRLAKVALRPGAGN--LVNGILRKLVLLKDNNSLPLPKLEGNDRAQARA 222
+P A+ DE +LAK + +G+ L+NGILR L + LP ND +
Sbjct: 90 KVPANAIFDEANKLAKKYSKRNSGSYKLINGILR--ALERQGEILP----PTNDLVEY-- 141
Query: 223 LATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKG--------VTRADL 274
L+ S P W+V + G+ + +++V +N + S+R +++ + + +
Sbjct: 142 LSIKESFPKWLVEYLLDHFGENKTKEILVRSNQPAANSIRMTTKESDFEEIKEELKKDNF 201
Query: 275 VMQLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQ 334
+ + L PH L+L+ K G V Q L K G +QD +A L V D +
Sbjct: 202 SFEESSL---TPHNLNLN-------KGG---VAQTALFKNGKITIQDAAASLAVDAFDFK 248
Query: 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHA 394
+ ++D C+APGGKT+ +A L+ G V A+DI++ +LR++ A+ V+ ++T
Sbjct: 249 GSEQVLDACSAPGGKTVQIAENLT-TGSVIALDIHENKLRLVRNAAERLHVSDKVKTKAL 307
Query: 395 DLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLL 454
D R + + DK+L+DAPCSGLG++ ++ ++R+ + L D++ L +Q +L++ S L
Sbjct: 308 DARK---ANQGQFDKILVDAPCSGLGLIRRKPEIRYEKSLNDIKNLAKIQLAILESVSGL 364
Query: 455 VKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPAD-GLVPSDFVTKHGFFFSDPIK 513
+ GG LVYSTC+I EE+E V+ FL HP+F + P G +P + + F P
Sbjct: 365 LANGGELVYSTCTISYEEDEGVVKQFLKVHPDFELIPVQVGKLPKQEMVR--IF---PSS 419
Query: 514 HSLDGAFAARLVR 526
DG F A+L +
Sbjct: 420 DGSDGFFIAKLKK 432
>gi|291522862|emb|CBK81155.1| ribosomal RNA small subunit methyltransferase RsmB [Coprococcus
catus GD/7]
Length = 455
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 131/431 (30%), Positives = 204/431 (47%), Gaps = 32/431 (7%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSS-----MEPLLLQILRIGFYEI 161
LD RD ++ + GT+ + +LD +I + FSS ++ + ILR+ Y+I
Sbjct: 39 LDKRDRAFISRLFRGTLEYEIFLDGVI-------RQFSSVRLNKIKTPIKAILRMSVYQI 91
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
+K+D +P A DE V+L + VNG+LR + K+ P P ++ A
Sbjct: 92 LKMDHIPDAAACDEAVKLTRKRGLKNLSGFVNGVLRNISRNKEVIHYPDP-----EKTPA 146
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
L+ YS P W+ W + G E ++ D ++R + + ++
Sbjct: 147 AYLSMRYSVPEWLAEMWLRDYGFEMTAEMGQAMLDDQKTTVRVRDSQNMAAVKEALRSEG 206
Query: 281 LKLQVPHEL--SLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQS 338
L ++ L +LHL +G + G +G QDESA L G+S
Sbjct: 207 LHIEEGCMLPEALHL-------SGYDYLGNVGPFADGRITAQDESAMLAAVAAGIAGGES 259
Query: 339 IVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT 398
I+D CAAPGGK+++MA L G G V A D+ + ++ + E K + +V + D
Sbjct: 260 IIDVCAAPGGKSMHMADILKGSGQVSARDLTEAKVLKIQENLKRTGLKNVSAEVK-DALV 318
Query: 399 FADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPG 458
F K D V+ D PCSGLGV+ ++AD++ + E + L LQ E+L VKPG
Sbjct: 319 FYPEDAQKADIVMADLPCSGLGVMGRKADIKRSVTPEKITALAALQREILSVVQHYVKPG 378
Query: 459 GVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDF---VTKHGFFFSDPIKHS 515
G+LVYSTC++ ENEE ++ F P F ++ D +P TK G+ P ++
Sbjct: 379 GILVYSTCTVSKAENEENMQWFEEHFP-FGLESLDAYIPEKVRNEQTKAGWIQILPGQYQ 437
Query: 516 LDGAFAARLVR 526
DG F AR R
Sbjct: 438 SDGFFIARFRR 448
>gi|377831247|ref|ZP_09814228.1| rRNA methylase [Lactobacillus mucosae LM1]
gi|377554925|gb|EHT16623.1| rRNA methylase [Lactobacillus mucosae LM1]
Length = 448
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 129/436 (29%), Positives = 221/436 (50%), Gaps = 53/436 (12%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
++ L + D RL T++V G ++ + L++ + +K S ++ LLL + Y+
Sbjct: 35 LKSSQLSEVDKRLATNLVYGVLQHKLTLEYWLAPFIKGKKIESWVKTLLL----MSIYQY 90
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVL--LKDNNSLPLPKLEGNDRA 218
LD +P +AV +E++ LAK PG V G+L ++ L D N++ P
Sbjct: 91 RYLDRVPDWAVTNESIELAKQLGNPGTRRFVTGVLHAVLRQGLGDVNAIEDP-------- 142
Query: 219 QARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQL 278
+ + +S P W+V K GQ A + N SLR N + + +
Sbjct: 143 -IKRRSVEFSLPQWLVDELIKQYGQPTADAIFKAVNEPARVSLRVNE----VKTTIPQAI 197
Query: 279 NLLKLQ----VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQ 334
+LK Q VP +++ + VK+G +V+ +GL +QDESA L V +
Sbjct: 198 AILKEQGVEVVPSQVA---KAGLVVKSG--DVVNTDSFMQGLVTIQDESAMLAVESMTIN 252
Query: 335 PGQSIVDCCAAPGGKTLYMASCLSGQ--GLVYAIDINKGRLRILNETAKLHQVNSVIRTI 392
P ++D CAAPGGKT+ +A+ L + G V A+DI+ +++++ + A+ V +
Sbjct: 253 PADQVLDACAAPGGKTVQIAAALDEKQGGSVTALDIHAHKIKLIEKNAQRLGVAERVHAC 312
Query: 393 HADLRT----FADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELL 448
D R F D + DK+L+DAPCSG+G+L ++ ++R++++L D + L +Q +L
Sbjct: 313 QLDARKVDEKFEDG---QFDKILVDAPCSGIGLLRRKPEIRYDKKLSDSQNLHEIQLAIL 369
Query: 449 DAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPAD--------------G 494
+A + +K GG++ YSTC+I +EN+ V+AFL HPEF +
Sbjct: 370 NAVAPKLKKGGIMTYSTCTILQQENDGTVQAFLAAHPEFRLLKTQTARALKNARTGATLT 429
Query: 495 LVPSDFVTKHGFFFSD 510
++PSD+ + GFF S+
Sbjct: 430 ILPSDYGS-DGFFISN 444
>gi|229918581|ref|YP_002887227.1| sun protein [Exiguobacterium sp. AT1b]
gi|229470010|gb|ACQ71782.1| sun protein [Exiguobacterium sp. AT1b]
Length = 443
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 129/419 (30%), Positives = 218/419 (52%), Gaps = 41/419 (9%)
Query: 68 LMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRR 127
LM+I+ GGA++ + V TL + K + +D+ L T++V GT+ +
Sbjct: 11 LMKIEQGGAYSTI--------------AVNDTL--KQKKVAPKDVGLYTELVYGTLSRKG 54
Query: 128 YLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKV-ALRP 185
LD+++ K ++ +L +LR+ Y++ LD +P AV+ E V +AK
Sbjct: 55 TLDYILKDRIRSPK---KLDKFVLPLLRMSVYQLFYLDKVPDRAVLHEAVEIAKKRGHHL 111
Query: 186 GAGNLVNGILRKLVL--LKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQ 243
G VNG+LR ++ D +SL A +A +SHP W+V W + G
Sbjct: 112 GTSKFVNGVLRNVLREGFPDFSSL----------TDAERIAIEHSHPEWLVSDWIELYGV 161
Query: 244 EEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFIRVKTGL 303
E A + NN ++R N RK ++ +++ +L + L D + V++G
Sbjct: 162 ETAEAICRLNNEPAPVTIRVN-RKRISVDEMMNRLADAGVMTSRS-ELSADGLV-VESG- 217
Query: 304 QNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLV 363
NV ++EGL ++QDES+ +V + I+D CAAPGGK ++ A + G G +
Sbjct: 218 -NVHATPFIEEGLLSIQDESSMIVADALGVSKDDVILDACAAPGGKAMHTAERMQG-GSL 275
Query: 364 YAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKC-DKVLLDAPCSGLGVL 422
A+D++ + +++++ AK +N V + D R + + D++LLD PCSGLGV+
Sbjct: 276 TALDLHPHKAKLIDQQAKRLHINGVT-ALALDARLAGERFEEESFDRILLDVPCSGLGVI 334
Query: 423 SKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFL 481
++ D++W + +E L +Q +++DA L+KPGG LVYSTC+IDP ENE + + L
Sbjct: 335 RRKPDIKWTKDKAQLENLPKIQRQIIDAVLPLLKPGGTLVYSTCTIDPSENETQADYML 393
>gi|336053902|ref|YP_004562189.1| rRNA methylase [Lactobacillus kefiranofaciens ZW3]
gi|333957279|gb|AEG40087.1| rRNA methylase [Lactobacillus kefiranofaciens ZW3]
Length = 441
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 140/469 (29%), Positives = 239/469 (50%), Gaps = 44/469 (9%)
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVG 120
RA+S L+R+ G+++++ S +N + + +L D L T IV
Sbjct: 8 RAISLETLIRVLADGSYSNI-------SLNNSLQHSSLSLT---------DQNLATRIVY 51
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLA 179
GTI++R +L++ + L + T ++PLLL + Y+I+ LD +P AV+DE +LA
Sbjct: 52 GTIQYRLFLEYQLKGLVRTKITEKYLKPLLL----MSLYQIIFLDKVPNRAVLDEANKLA 107
Query: 180 KVALRPGAGN--LVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRW 237
K R + ++NGILR + + LP + + + R L+ S P W+V +
Sbjct: 108 KQFGRHHSSGYRIINGILRSFI----RRGVILP----DKKDRIRYLSIKESVPEWLVNYF 159
Query: 238 TKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFI 297
G ++ ++ N S+R +S V + +L + P +L + +
Sbjct: 160 INNFGIKKTESVLTSINQPAKNSVRISSL--VDSKQVFAKLKADGYE-PQWSNLSTHDVV 216
Query: 298 RVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVD-PQPGQSIVDCCAAPGGKTLYMASC 356
G+ Q+ L K+G +QDE+A LVV + Q ++D C+APGGKT+ +A
Sbjct: 217 LNHGGIS---QSDLFKQGKLTIQDEAASLVVEAFNFDQEADHVLDACSAPGGKTVQIAEN 273
Query: 357 LSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-NSTVKCDKVLLDAP 415
+ G V A+DI++ +L ++ E A+ V ++T D R + + K+L+DAP
Sbjct: 274 IKGD--VIALDIHEKKLNLVRENARRMHVEDRVKTKACDARKAPEIFKPGEFSKILVDAP 331
Query: 416 CSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEE 475
CSGLG+L ++ ++R+ + L+D+ L+ +Q +L++ S L+K G LVYSTCSI EENE+
Sbjct: 332 CSGLGLLRRKPEIRYTKSLQDLRNLQKIQLAILNSVSSLLKEQGELVYSTCSISIEENEQ 391
Query: 476 RVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARL 524
V+ FL +HP + ++P S ++ G P DG F A+
Sbjct: 392 VVKQFLRQHPSYKLEP---FKLSKLESETGMLKVMPDLDGNDGFFIAKF 437
>gi|199597150|ref|ZP_03210582.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus rhamnosus HN001]
gi|199591954|gb|EDZ00029.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus rhamnosus HN001]
Length = 446
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 141/458 (30%), Positives = 221/458 (48%), Gaps = 48/458 (10%)
Query: 85 GKGSGDNEMGYVERTLG--FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKT 142
GKG GY TL LD RD L+T++V G I+ + LD+L+ + +
Sbjct: 19 GKG------GYSNLTLDHVITKYQLDSRDAGLLTNVVYGVIQHQLTLDYLLAPFVKNRQ- 71
Query: 143 FSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLL 201
++ + +L+ Y++ LD +P AV ++ +AK G V G+LR+
Sbjct: 72 ---LDTWVRCLLQTAVYQLQYLDKVPARAVFFDSTEIAKKLGHQGVAKFVTGVLRQ---- 124
Query: 202 KDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSL 261
+ P P + + LA S PVW+V++ LG+ + K++ N S+
Sbjct: 125 AQRSGYPDPMTIADP---IQRLAITSSTPVWLVKKLQAQLGETKTAKILAAINQPAHASI 181
Query: 262 RANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLK------EG 315
R N+ K A L L E GL V G L +G
Sbjct: 182 RVNTTKTTAAALLKALQLQFPA---------LKESPLTPVGL--VAPGGHLAGTREFADG 230
Query: 316 LCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQ--GLVYAIDINKGRL 373
L +QDES+ LV +D QPG ++D CAAPGGKT ++A L G V A+D++ ++
Sbjct: 231 LYTMQDESSMLVAPSLDVQPGDQVLDACAAPGGKTTHIAQYLDPDQGGRVTALDLHANKV 290
Query: 374 RILNETAKLHQVNSVIRTIHADLRTFADNSTVKC-DKVLLDAPCSGLGVLSKRADLRWNR 432
R++ + AK ++ + D R A N + DK+L+DAPCSGLG++ ++ ++++ +
Sbjct: 291 RLIQQNAKRLDLDDRVAAQVMDARQVAANFAAESFDKILVDAPCSGLGLIRRKPEIKYTK 350
Query: 433 RLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPA 492
+ ED++ L+ +Q +LD+ + +K GG L YSTC++ EEN++ V FL HPEF P
Sbjct: 351 QPEDLQHLQKIQLAILDSVAPTLKIGGRLTYSTCTMVKEENQDVVAHFLATHPEFEQVPV 410
Query: 493 DGLVPSDFVTKHGF----FFSDPIKHSLDGAFAARLVR 526
L P HG F D + DG F A L+R
Sbjct: 411 LTLKP--LAKTHGAPALQLFPD--DYDTDGFFIASLIR 444
>gi|259503543|ref|ZP_05746445.1| RNA methyltransferase Sun [Lactobacillus antri DSM 16041]
gi|259168621|gb|EEW53116.1| RNA methyltransferase Sun [Lactobacillus antri DSM 16041]
Length = 448
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 133/424 (31%), Positives = 222/424 (52%), Gaps = 39/424 (9%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L+D D RL T IV GT++ + L++ + +K S +E LLL L Y+ L+
Sbjct: 39 LNDNDRRLATRIVYGTLQRQLTLEYWLQPFVKGKKLDSWVETLLLTAL----YQYQYLER 94
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P +AV DE + +AK PG V G+L ++ P+ + R ++ LA
Sbjct: 95 VPDWAVTDETIEIAKQWGNPGIRKFVTGVLHAVL------RQGFPRFD-QLRDESERLAV 147
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADL-VMQLNLLKLQ 284
+S P W+V GQ +A +++ N +R N+ VT DL ++ L
Sbjct: 148 QFSVPRWLVDELVSQYGQSQATRVLQSVNDPARLVVRVNT--AVT--DLATVESQLRAAG 203
Query: 285 VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 344
+ + S + + G ++ + L G VQDESA L V ++ QPG ++D CA
Sbjct: 204 IEFQKSRVAPNALVITKG--ELLGSALFATGQITVQDESAMLAVDSMNVQPGDRVLDACA 261
Query: 345 APGGKTLYMASCL--SGQGLVYAIDINKGRLRILNETA-KLHQVNSVIRTIHADLRTFAD 401
APGGKT+ +A L + G V A+DI++ + +++ + A ++H + V+ T D R AD
Sbjct: 262 APGGKTVQIAERLDPATGGRVDALDIHEHKTKLIQKNASRMHMADRVV-THTLDARRVAD 320
Query: 402 N-STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGV 460
+ DK+L+DAPCSG+G+L ++ ++R+ + L D ++L +Q +L+A + VK GG+
Sbjct: 321 EFADETFDKILVDAPCSGIGLLRRKPEIRYTKSLADSQKLHKIQGSILNAVAPKVKKGGI 380
Query: 461 LVYSTCSIDPEENEERVEAFLLRHPEFSI-----------DPADG---LVPSDFVTKHGF 506
+ YSTC+I +ENE+ V+ FL H +F + D A ++P+D+ + GF
Sbjct: 381 ITYSTCTILQQENEQTVQEFLAAHSDFRLLTTKTSRNLKDDRASATLTILPADYGSD-GF 439
Query: 507 FFSD 510
F S+
Sbjct: 440 FISN 443
>gi|389856110|ref|YP_006358353.1| sun protein [Streptococcus suis ST1]
gi|353739828|gb|AER20835.1| sun protein [Streptococcus suis ST1]
Length = 437
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 135/426 (31%), Positives = 212/426 (49%), Gaps = 36/426 (8%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDM 166
L +D LVT+++ GT+ + L+ + D + + LL + + KL
Sbjct: 40 LSAQDKGLVTELIYGTVSRKITLEWYLAHFIEDREKLDTWVYYLLMLSLYQLLYLDKL-- 97
Query: 167 PPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATI 226
P +AVV+E V +AK +PG VN ILRK+ ++LP P + + + + L+
Sbjct: 98 PTHAVVNEAVNIAK--RKPGTDKFVNAILRKI----SQSTLPNP---ADIKRKNKRLSVQ 148
Query: 227 YSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTR-ADLV----MQLNLL 281
YS PVW+V+ G E A K+ + S+R + V R AD + QL+ +
Sbjct: 149 YSVPVWLVQTLIAEYGDERAEKVFQSLHDRNKASVRVTDGQQVERLADELGAQHSQLSPV 208
Query: 282 KLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVD 341
L H D F KEGL +QDE++ LV +D Q + I+D
Sbjct: 209 GLVKSHGHFAGTDYF----------------KEGLITIQDETSQLVAPTLDIQGDEIILD 252
Query: 342 CCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADL-RTFA 400
CAAPGGKT +MAS L+ G VYA+D+ +L ++ E A+ + I T D R
Sbjct: 253 ACAAPGGKTCHMASYLT-DGKVYALDLYDHKLNLIEENARRLGLEDKIETKGLDASRVHE 311
Query: 401 DNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGV 460
+ DK+L+DAPCSG+G++ ++ D+R+N+ D + LK +Q ++LD+ +K GG+
Sbjct: 312 EFGPDTFDKILVDAPCSGIGLIRRKPDIRYNKASMDFDSLKTIQLQILDSVCQSLKIGGI 371
Query: 461 LVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAF 520
+ YSTC+I +EN+E ++ FL HP F + P + G P ++ DG F
Sbjct: 372 ITYSTCTIIAKENQEVIQEFLQNHPNFEQVILEH--PQTDIMVDGCLLITPEQYKTDGFF 429
Query: 521 AARLVR 526
+L R
Sbjct: 430 IGQLRR 435
>gi|418576403|ref|ZP_13140549.1| putative tRNA and rRNA cytosine-C5-methylase [Staphylococcus
saprophyticus subsp. saprophyticus KACC 16562]
gi|379325465|gb|EHY92597.1| putative tRNA and rRNA cytosine-C5-methylase [Staphylococcus
saprophyticus subsp. saprophyticus KACC 16562]
Length = 437
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 125/431 (29%), Positives = 226/431 (52%), Gaps = 64/431 (14%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD 165
+L+ D L T++V GT++ + LD+L+ + ++ + Q+L + Y+ V LD
Sbjct: 37 ELNRADKGLYTELVYGTLKRKYTLDYLLKPFVQ-----TKLKGWVRQLLWMSIYQYVYLD 91
Query: 166 -MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P +A+++E V +AK P GN+VNGILR ++ + LP +D+ + +A
Sbjct: 92 KIPEHAIINEAVEIAKYKGGPHNGNVVNGILRNIM----RSDLPDFTEITDDK---KRIA 144
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQ 284
YS P W+V WT + G E+ + ++ + + +++NL ++
Sbjct: 145 IEYSLPKWLVDHWTTHFGIEKTETI---------------AQSFLDKVTTTVRVNLTRIS 189
Query: 285 VPHELS-LHLDEFI-----RVKTGL----QNVIQAGLLKEGLCAVQDESAGLVVAVVDPQ 334
V + L D++I ++T L + +I++ + K+GL ++QD+S+ + ++ +
Sbjct: 190 VDDAIRRLTDDDYIVEQDREIETCLHISGKPIIESRMFKDGLISIQDKSSMFIGELMALK 249
Query: 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIH- 393
G ++D C+APGGK ++A L+G G V A DI++ ++ +++ IR +
Sbjct: 250 EGDQVLDACSAPGGKACHIAEILNGTGHVDATDIHEHKIDLIDFN---------IRKLRL 300
Query: 394 ADLRTFADNSTVKCDKV----LLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLD 449
+++ F ++T K DKV L+DAPCSGLGVL + ++++ + +E L +Q E+L+
Sbjct: 301 SNISAFEHDATEKYDKVYDKILVDAPCSGLGVLRHKPEIKYEQSQHAIESLVEIQLEILN 360
Query: 450 AASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSID----PADG-------LVPS 498
VKPGG ++YSTC+I+ ENE V FL + +F D P G ++P
Sbjct: 361 NVKYNVKPGGTMIYSTCTIEQMENENVVYTFLKENKDFEFDQFEHPITGEKVKTMQILPQ 420
Query: 499 DFVTKHGFFFS 509
DF GFF +
Sbjct: 421 DF-NSDGFFIT 430
>gi|212709010|ref|ZP_03317138.1| hypothetical protein PROVALCAL_00042 [Providencia alcalifaciens DSM
30120]
gi|212688376|gb|EEB47904.1| hypothetical protein PROVALCAL_00042 [Providencia alcalifaciens DSM
30120]
Length = 428
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 130/422 (30%), Positives = 218/422 (51%), Gaps = 39/422 (9%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
++++D+D L+ +I G +R+ L+ I L EK + + L ++ +G Y+++
Sbjct: 34 RNINDKDKALLQEICFGVLRYLPKLEWFISQLM--EKPLTGKQRTLHYLIMVGIYQLLYT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P +A + E V A RP L+NG+LR + + L + N+ +Q
Sbjct: 92 RIPAHAALAETVDGAVALKRPQLKGLINGVLRSFL----RQQVQLEERNTNNNSQ----- 142
Query: 225 TIYSHPVWMVRR-WTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVM--QLNLL 281
Y HP W+++R T Y E ++ NN P LR NS+ L + Q ++
Sbjct: 143 --YLHPSWLLKRIQTAY--PETWQNIVDANNQRPPMWLRVNSQHHTAEQYLALLEQADIT 198
Query: 282 KLQVP-HELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIV 340
P H ++ L+E +V + ++G VQD SA ++ P G++I+
Sbjct: 199 AYLHPSHPSAIRLEEAT-------SVTRLPGFEDGWSTVQDVSAQGCAELLSPINGENIL 251
Query: 341 DCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNET-AKLHQVNSVIRTIHADLRTF 399
D CAAPGGKT ++ L+ + V A+DI+ RL+ + E +L Q +VI+ +
Sbjct: 252 DLCAAPGGKTTHILE-LAPKAHVLAVDIDDARLKRVKENLQRLKQHATVIQGDGTKPEEW 310
Query: 400 ADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGG 459
A + D++LLDAPCS GV+ + D++W RR D++EL LQ ++L+A +KPGG
Sbjct: 311 AKDQLF--DRILLDAPCSATGVIRRHPDIKWLRRDSDIQELSQLQAQILEAVWSYLKPGG 368
Query: 460 VLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADG------LVPSDFVTKHGFFFSDPIK 513
LVY+TCSI PEEN ++++ FL +H + I+ DG ++PS GFF++ +K
Sbjct: 369 TLVYATCSIMPEENSQQIKHFLSKHVDARIN--DGTELGLQILPS-ATGGDGFFYARLLK 425
Query: 514 HS 515
+
Sbjct: 426 QA 427
>gi|312143910|ref|YP_003995356.1| sun protein [Halanaerobium hydrogeniformans]
gi|311904561|gb|ADQ15002.1| sun protein [Halanaerobium hydrogeniformans]
Length = 444
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 122/386 (31%), Positives = 204/386 (52%), Gaps = 37/386 (9%)
Query: 108 DDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-M 166
D RD L T+I G IR + YLDH+I + K+ M+ +L LRIG Y+++ LD +
Sbjct: 34 DQRDKNLFTEIFYGVIRNKLYLDHIIKHFSN--KSLEKMDKEVLLGLRIGIYQLLFLDKI 91
Query: 167 PPYAVVDENVRLAKVALR-PGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
P A + E+V K+ L+ GA VNGILR + D S+ +P+ +++ + +
Sbjct: 92 PARAAIYESVEAVKLMLKNKGAAAFVNGILRNVNRKIDQVSI-IPR----EKSPLKHFSI 146
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
YS+P WM++R+ G E+A K++ + G RA+++ + N LK+
Sbjct: 147 KYSYPEWMIKRFIDQYGIEKAEKII---------------KAGNKRAEVIYRHNSLKMSK 191
Query: 286 PHELSLHLDEFIRVKT----GLQNVIQAG------LLKEGLCAVQDESAGLVVAVVDPQP 335
L E + K G N++ A + K+G +Q SAGL +++P+
Sbjct: 192 QEFLRSLKREGLDFKETFVPGFYNLLNANNPVDTEVFKKGGAYIQGTSAGLASLLLEPKE 251
Query: 336 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHAD 395
++D AAPGGKT ++A + G + A+DIN RL ++ E + V +V AD
Sbjct: 252 DMDVLDLAAAPGGKTTHLAMLMENTGHIKALDINPTRLNLIKENMQRLGVKNV-SLEKAD 310
Query: 396 LRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLV 455
+ S K D++L D PCSGLG++S + +++W ++ +D++ + LQ E+L+ +
Sbjct: 311 AAEY--QSEKKYDRILADLPCSGLGLISAKPEIKWQKKEKDIKNMAKLQYEILNNNISKL 368
Query: 456 KPGGVLVYSTCSIDPEENEERVEAFL 481
K G+L+YSTC++ EEN+ +E L
Sbjct: 369 KSEGMLLYSTCTLTREENQLLIERIL 394
>gi|228916502|ref|ZP_04080068.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
gi|228928913|ref|ZP_04091945.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|228935179|ref|ZP_04098006.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228947584|ref|ZP_04109874.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|229123379|ref|ZP_04252583.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus cereus 95/8201]
gi|229186105|ref|ZP_04313274.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus cereus BGSC
6E1]
gi|228597281|gb|EEK54932.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus cereus BGSC
6E1]
gi|228660155|gb|EEL15791.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus cereus 95/8201]
gi|228812104|gb|EEM58435.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|228824544|gb|EEM70349.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228830720|gb|EEM76325.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|228843081|gb|EEM88163.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
Length = 360
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 117/333 (35%), Positives = 184/333 (55%), Gaps = 17/333 (5%)
Query: 161 IVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQ 219
++ LD +P A + E V +AK G +VNG+LR + +P E D +
Sbjct: 1 MIYLDRVPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSI----QREGVPSVD-EIKDPVE 55
Query: 220 ARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLN 279
A+AT SHPVW+V+ WT G E A K+ N P + R N K +T + + L
Sbjct: 56 RLAIAT--SHPVWLVQEWTAEYGLETAEKMCEVNMLPPVPTARVNVDK-ITVEEAITLLA 112
Query: 280 LLKLQVPH-ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQS 338
++ +LS D+ I+++ G NV K+G ++QDES+ LV ++P G
Sbjct: 113 SEGIEAKRGDLS---DDAIQIEKG--NVAHTDAFKKGFLSIQDESSMLVARALEPDEGDV 167
Query: 339 IVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT 398
I+D CAAPGGKT ++A L G G V ++D++ ++R++ + A+ + +V T D R
Sbjct: 168 ILDSCAAPGGKTTHIAERLKGTGQVMSLDLHAHKVRLIKQQAERLGLENV-ETKALDARK 226
Query: 399 FADN-STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKP 457
++ + DK+L+DAPCSG GV+ ++ D++ + D E L ++Q +L+ + L+K
Sbjct: 227 VQEHFANETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSERLSMIQFAILEKIAPLLKQ 286
Query: 458 GGVLVYSTCSIDPEENEERVEAFLLRHPEFSID 490
GG LVYSTC+I+ ENE+ +E FL HPEF D
Sbjct: 287 GGRLVYSTCTIEKIENEQVIERFLQEHPEFEWD 319
>gi|229092908|ref|ZP_04224042.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus cereus
Rock3-42]
gi|228690530|gb|EEL44313.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus cereus
Rock3-42]
Length = 360
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 117/333 (35%), Positives = 183/333 (54%), Gaps = 17/333 (5%)
Query: 161 IVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQ 219
++ LD +P A + E V +AK G +VNG+LR + +P E D +
Sbjct: 1 MIYLDRVPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSI----QREGVPSVD-EIKDPVE 55
Query: 220 ARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLN 279
A+AT SHPVW+V+ WT G E A K+ N P + R N K +T + + L
Sbjct: 56 RLAIAT--SHPVWLVQEWTAEYGLETAEKMCEMNMLPPVPTARVNVDK-ITVEEAITLLA 112
Query: 280 LLKLQVPH-ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQS 338
++ +LS D+ I+++ G NV K+G ++QDES+ LV ++P G
Sbjct: 113 SEGIEAKRGDLS---DDAIQIEKG--NVAHTDAFKKGFLSIQDESSMLVARALEPDEGDV 167
Query: 339 IVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT 398
I+D CAAPGGKT ++A L G G V ++D++ ++R++ + A+ + +V T D R
Sbjct: 168 ILDSCAAPGGKTTHIAERLKGTGQVMSLDLHAHKVRLIKQQAERLGLENV-ETKALDARK 226
Query: 399 FADN-STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKP 457
++ + DK+L+DAPCSG GV+ ++ D++ + D E L +Q +L+ + L+K
Sbjct: 227 VQEHFANETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSERLSTIQFAILEKIAPLLKQ 286
Query: 458 GGVLVYSTCSIDPEENEERVEAFLLRHPEFSID 490
GG LVYSTC+I+ ENE+ +E FL HPEF D
Sbjct: 287 GGRLVYSTCTIEKIENEQVIERFLQEHPEFEWD 319
>gi|312869942|ref|ZP_07730081.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus oris
PB013-T2-3]
gi|417886267|ref|ZP_12530414.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus oris
F0423]
gi|311094527|gb|EFQ52832.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus oris
PB013-T2-3]
gi|341593765|gb|EGS36590.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus oris
F0423]
Length = 449
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 135/425 (31%), Positives = 219/425 (51%), Gaps = 43/425 (10%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L+D D RL T IV GT++ + L++ + ++ S +E LLL L Y+ L+
Sbjct: 40 LNDSDRRLATRIVYGTLQHQLTLEYWLQPFVKGKRLDSWVETLLLTAL----YQYHYLER 95
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P +AV DE + +AK PG V G+L ++ P + + R LA
Sbjct: 96 VPDWAVTDETIEIAKHWGNPGIRKFVTGVLHAVL------RRGFPDFDQVQDPEER-LAV 148
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADL-VMQLNLLKLQ 284
YS P W+V G+ +A +++ N +R N+ VT DL ++ L
Sbjct: 149 QYSIPRWLVHELGAQYGRAQAAQILKAVNDPARLVVRVNT--AVT--DLATVKAGLHAAG 204
Query: 285 VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 344
+ ++ S + + + G ++ + L G VQDESA L V + QPG ++D CA
Sbjct: 205 IEYQESRVVPNALVITKG--EILDSPLFATGQITVQDESAMLAVDSMAVQPGDRVLDACA 262
Query: 345 APGGKTLYMASCL--SGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR----T 398
APGGKT+ +A L + G V A+DI++ + R++ + A+ QV+ + D R
Sbjct: 263 APGGKTVQIAERLDPTAGGRVDALDIHQHKARLIQKNARRMQVDDRVVAHTLDARRVDEE 322
Query: 399 FADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPG 458
FAD S DK+L+DAPCSG+G+L ++ ++R+ ++L D + L +Q +L+A + VK G
Sbjct: 323 FADES---FDKILVDAPCSGIGLLRRKPEIRYTKKLADSQNLHQIQGSILNAVAPKVKKG 379
Query: 459 GVLVYSTCSIDPEENEERVEAFLLRHPEFSI-----------DPADG---LVPSDFVTKH 504
G++ YSTC+I +ENE+ V+ FL H +F + D A ++PSD+ +
Sbjct: 380 GIITYSTCTILQQENEQTVQEFLAAHSDFRLLTTKTSRNLKDDRALATLTILPSDYGSD- 438
Query: 505 GFFFS 509
GFF S
Sbjct: 439 GFFIS 443
>gi|365853491|ref|ZP_09393760.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
parafarraginis F0439]
gi|363712381|gb|EHL96075.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
parafarraginis F0439]
Length = 444
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 129/425 (30%), Positives = 219/425 (51%), Gaps = 25/425 (5%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDH-LICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD 165
+ D D L T IV G I+ R L++ L + EKT E + ++L Y++ LD
Sbjct: 38 MSDVDKGLFTTIVYGVIQHRLTLEYQLAPFIKEPEKT----ENWVKELLYSAMYQLQYLD 93
Query: 166 -MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P A+ DE++++AK G V GIL ++ D L P + + L+
Sbjct: 94 RVPKRAIFDESIKIAKSMGHDGTRRFVTGILHQM----DRKGLSNP---SDIKDPLERLS 146
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQ 284
S P W+V+ + LG+++A + N P S+R N K ++++DL+ QL+
Sbjct: 147 IQTSVPQWLVKLVSDQLGEKKAATIFRSLNRAPKQSVRVNKHK-ISKSDLLGQLSKAGFD 205
Query: 285 VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 344
PH + + + K V+ + +GL A+QDESA L V + + I+D C+
Sbjct: 206 -PHPSEVASEGLVLEKG---QVLHSSFFDDGLVAIQDESAMLPVESMPIKADDLILDACS 261
Query: 345 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNST 404
APGGKT +A+ L +G V A+DI++ +LR +N A+ ++ + T D R +
Sbjct: 262 APGGKTTQIAANLK-EGRVVALDIHQNKLRNVNHNAQRLGLSERVETHALDARQVDEQFD 320
Query: 405 VKC-DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463
+ D +L+DAPC+G G++ ++ ++R+++ + D+ L +Q ++L A + VKPGG + Y
Sbjct: 321 DEFFDHILVDAPCTGFGLMRRKPEIRYDKTMADVNHLAEIQGQILAAVAYKVKPGGTITY 380
Query: 464 STCSIDPEENEERVEAFLLRHPEFSIDP--ADGLVPSDFVTKHGFFFSDPIKHSLDGAFA 521
STC+I +EN+ + F+ HPEF + P D + +D ++G P DG F
Sbjct: 381 STCTIVRQENQGVIAKFIDAHPEFEVQPTKTDMDLKTD---ENGMLNIYPDDFDSDGFFV 437
Query: 522 ARLVR 526
+VR
Sbjct: 438 CSMVR 442
>gi|325977628|ref|YP_004287344.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
gallolyticus subsp. gallolyticus ATCC BAA-2069]
gi|386337149|ref|YP_006033318.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
gallolyticus subsp. gallolyticus ATCC 43143]
gi|325177556|emb|CBZ47600.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
gallolyticus subsp. gallolyticus ATCC BAA-2069]
gi|334279785|dbj|BAK27359.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
gallolyticus subsp. gallolyticus ATCC 43143]
Length = 440
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 130/423 (30%), Positives = 214/423 (50%), Gaps = 27/423 (6%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L +D LVT+IV GT+ + L+ L H K ++ + +L + Y++V LD
Sbjct: 40 LSPKDKSLVTEIVYGTVARKITLE---WYLAHYIKDRDKLDSWVYYLLMLSLYQLVYLDK 96
Query: 166 MPPYAVVDENVRLAKV-ALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P +AVV++ V +AK + GA VN +LR+ LP PK + + + +
Sbjct: 97 IPAHAVVNDAVNIAKNRGNKKGAEKFVNAVLRRFT----KEELPNPK---TIKRKNKRYS 149
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQ 284
+YS PVW+V++ G+E A +M S +R + VT D +L +K
Sbjct: 150 VLYSLPVWLVKKLIDQFGEERAAAIM------QSLFVRNKASIRVTDPD---KLAEIKAA 200
Query: 285 VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 344
E S+ L VKT + G +QDES+ LV +D Q + I+D CA
Sbjct: 201 TGAEQSI-LSPVGLVKTS-GHFAGTDYFANGDITIQDESSQLVAPTLDIQGNEDILDACA 258
Query: 345 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNST 404
APGGKT +MAS L +G + A+D+ +L ++ + AK V I T D T ++
Sbjct: 259 APGGKTTHMASYLK-KGHITALDLYDHKLTLVMDNAKRLHVADKISTQKMDATTVHEHFV 317
Query: 405 VKC-DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463
DK+L+DAPCSG+G++ ++ D+++N+ +D L+ +Q ++LD+ ++ GG++ Y
Sbjct: 318 PDSFDKILVDAPCSGIGLIRRKPDIKYNKENQDFSALQEIQLQILDSVCQTLRKGGIITY 377
Query: 464 STCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAAR 523
STC+I EEN + + FL HP F + + + + G P ++ DG F +
Sbjct: 378 STCTIFDEENFQVIHKFLETHPNF--EQVKLSHTQEDIVRDGCIAITPEQYQTDGFFIGQ 435
Query: 524 LVR 526
+ R
Sbjct: 436 VKR 438
>gi|225574499|ref|ZP_03783109.1| hypothetical protein RUMHYD_02576 [Blautia hydrogenotrophica DSM
10507]
gi|225038286|gb|EEG48532.1| ribosomal RNA small subunit methyltransferase B [Blautia
hydrogenotrophica DSM 10507]
Length = 446
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 133/432 (30%), Positives = 228/432 (52%), Gaps = 34/432 (7%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFS-SMEPLLLQILRIGFYEIVKLD 165
L ++ +T + GT+ ++ +D++ L H K + M+P++ +ILR Y++ +D
Sbjct: 35 LPKQERAFITRVCEGTLEYQITIDYI---LNHFSKVKTDKMKPVIREILRSSVYQLKYMD 91
Query: 166 -MPPYAVVDENVRLAKVALRPGAGNL---VNGILRKLVLLKDNNSLPLPK---LEGNDRA 218
+P AV +E V+LA+ + G NL VNG+LR + ++ +P P+ LE +
Sbjct: 92 SVPDSAVCNEAVKLAQ---KKGFYNLKPFVNGVLRTIA--REMEEVPYPERSDLENH--- 143
Query: 219 QARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQL 278
L+ YS P ++V++W + G+E K++ ++ ++R R+ +T + ++
Sbjct: 144 ----LSVKYSMPPFLVQKWLREYGEEITEKMLADFLTERPTTVRC--RQYLTNQEETLE- 196
Query: 279 NLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQS 338
++ + + + +LD + +G +++ EG VQD S+ LV V P+ G
Sbjct: 197 SIREQGIQVSPAPYLD-YAFYLSGYNHILTIQAFLEGKIQVQDVSSMLVAEVAAPKKGDQ 255
Query: 339 IVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNET-AKLHQVNSVIRTIHADLR 397
I+D CAAPGGK+L++A ++G G+V A D+ + ++ ++ E + +N R + A +
Sbjct: 256 ILDLCAAPGGKSLHVADKMAGFGMVEARDLTEYKVGLIQENIVRAGTINVQTRCMDATVL 315
Query: 398 TFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKP 457
+S D VL D PCSG GV+ K+ D+++ EE+ ILQ ++LD A+ VK
Sbjct: 316 DI--DSEDSADIVLADVPCSGYGVIGKKPDIKYKVTPSKQEEIVILQRKILDRAARYVKR 373
Query: 458 GGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDF---VTKHGFFFSDPIKH 514
GG LVYSTC+I EEN+E V FL +P F D +P + TK G+ P H
Sbjct: 374 GGTLVYSTCTIAKEENQENVSWFLENYP-FEAVELDSCLPQELCCETTKLGYLQLLPGVH 432
Query: 515 SLDGAFAARLVR 526
DG F A+ R
Sbjct: 433 KTDGFFIAKFKR 444
>gi|256958399|ref|ZP_05562570.1| fmu family protein [Enterococcus faecalis DS5]
gi|257078290|ref|ZP_05572651.1| fmu [Enterococcus faecalis JH1]
gi|294779981|ref|ZP_06745361.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis PC1.1]
gi|307270563|ref|ZP_07551861.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX4248]
gi|397701267|ref|YP_006539055.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis D32]
gi|422711158|ref|ZP_16768091.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX0027]
gi|256948895|gb|EEU65527.1| fmu family protein [Enterococcus faecalis DS5]
gi|256986320|gb|EEU73622.1| fmu [Enterococcus faecalis JH1]
gi|294452962|gb|EFG21384.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis PC1.1]
gi|306513144|gb|EFM81778.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX4248]
gi|315034823|gb|EFT46755.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX0027]
gi|397337906|gb|AFO45578.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis D32]
Length = 459
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 133/432 (30%), Positives = 227/432 (52%), Gaps = 37/432 (8%)
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVG 120
R V+ + R+ GGA+++LL NEM +L ++D RL T++V
Sbjct: 14 RYVALETIERVDKGGAYSNLLL--------NEM--------MTKSELSEKDGRLFTELVY 57
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLA 179
GTI + L++ + K ++ + +L + Y+++ LD +P +AV++E V +
Sbjct: 58 GTISRKLLLEYYLTPFV---KKPQKVDNWVRNLLILSLYQLLYLDKVPDHAVINEAVEIG 114
Query: 180 KVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGN-DRAQARALATIYSHPVWMVRRWT 238
K PG G VNG+LR + N + L + + DR LAT S P W+ +
Sbjct: 115 KRRGNPGIGKFVNGVLRAF---QRNGAPSLAAISDSVDR-----LATEISMPRWLTEKLL 166
Query: 239 KYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFIR 298
LG+EE +L + S R N+R ++R + + +L + E L +
Sbjct: 167 AQLGEEETRQLGLSLFEKSHASGRVNTR-FISREEALEELQETGI-AAKESQLSPYGVVA 224
Query: 299 VKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLS 358
K L + L G +QDES+ LV + +P ++D CAAPGGKT ++A+ L
Sbjct: 225 EKGYLAG---SELFINGCLTIQDESSMLVAPAMQIEPHHRVLDACAAPGGKTTHIATFLE 281
Query: 359 GQ--GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKC-DKVLLDAP 415
+ G V ++DI+ +++++NE A+ V V++ D R A+ + D++L+DAP
Sbjct: 282 AEAGGRVTSLDIHAHKIKLINENAQRLHVADVVQAEKLDARQVAEEFPAETFDRILVDAP 341
Query: 416 CSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEE 475
CSGLG++ ++ D+++++ D + L +Q E+L++ + +K G++VYSTC+I EEN+E
Sbjct: 342 CSGLGLMRRKPDIKYHKTANDFQNLPKIQLEILESVAPTLKQWGIMVYSTCTITSEENQE 401
Query: 476 RVEAFLLRHPEF 487
V AFL +HPEF
Sbjct: 402 VVAAFLAKHPEF 413
>gi|227500111|ref|ZP_03930182.1| possible rRNA SAM-dependent methyltransferase RmsB [Anaerococcus
tetradius ATCC 35098]
gi|227217826|gb|EEI83123.1| possible rRNA SAM-dependent methyltransferase RmsB [Anaerococcus
tetradius ATCC 35098]
Length = 433
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 137/415 (33%), Positives = 203/415 (48%), Gaps = 29/415 (6%)
Query: 112 LRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPPYAV 171
L T ++ G + + YLD++I L + + +L IL +G Y I L YA+
Sbjct: 35 LAYATKLIYGVLENKIYLDYMIGKLS--KVKIKKIHKNVLTILEMGLYNIHFLATKDYAI 92
Query: 172 VDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPV 231
VD+ V L K + A N VN ILR + N L K+ ND +AL+ YS P
Sbjct: 93 VDKLVELCKKKNKRSA-NFVNAILRNFI----RNEEDLAKIYIND--DIKALSIRYSMPE 145
Query: 232 WMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSL 291
+ R G + + N + S+R NS K R L +L L +ELSL
Sbjct: 146 EISRYIYDNYGMAYTKNFLRYTNDEARLSIRVNSLK-TDRESLKKRLEAL----GYELSL 200
Query: 292 HLDE----FIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPG 347
I +GL N ++ KEGL +Q E++ V V++P+ I+D CAAPG
Sbjct: 201 SKISDRALIIHNPSGLANSLE---FKEGLFTIQQEASMKTVEVLNPKRNSRILDICAAPG 257
Query: 348 GKTLYMASCLSGQGLVYAIDINKGRLRILNET-AKLHQVNSVIRTIHADLRTFADNSTVK 406
KT Y+A S G + A DI+ +L ++ E +L N I++ D F
Sbjct: 258 TKTSYLAEYTSNTGKIIANDISTNKLCLIKENIERLALTNIEIKSF--DGSVFNKEYEKS 315
Query: 407 CDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTC 466
D +L+DAPCSGLGV++++ ++R+NR L+D+ L ILQ E+LD + +K GG LVYSTC
Sbjct: 316 FDYILVDAPCSGLGVMARKPEIRYNRSLDDIRTLSILQREILDTSIRYLKDGGELVYSTC 375
Query: 467 SIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFV----TKHGFFFSDPIKHSLD 517
++ P EN + +L H + + +G +FV GFF S K + D
Sbjct: 376 TLGPIENLDNFN-YLKGHDQLELVQVEGKDYIEFVCFEDKTDGFFISKFKKKNYD 429
>gi|229104427|ref|ZP_04235096.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
Rock3-28]
gi|228679125|gb|EEL33333.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
Rock3-28]
Length = 354
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 114/328 (34%), Positives = 179/328 (54%), Gaps = 18/328 (5%)
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKL-EGNDRAQARALA 224
MP A + E V +AK G +VNG+LR + +P L E D + A+A
Sbjct: 1 MPERAAIHEAVEIAKRRGHKGISGMVNGVLRSI------QREGVPSLDEIKDPVERLAIA 54
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQ 284
T SHPVW+V+ W G E A K+ N P + R N V + + + LL +
Sbjct: 55 T--SHPVWLVQDWASEYGLETAEKMCEVNMLPPVPTARVN----VDKVTVEEAIELLASE 108
Query: 285 VPHELSLHL-DEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCC 343
S L ++ I+++ G NV K+G ++QDES+ LV +DP G++++D C
Sbjct: 109 GIEAKSGDLSNDAIQIERG--NVAHTEAFKKGFLSIQDESSMLVARALDPNEGETVLDSC 166
Query: 344 AAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN- 402
AAPGGKT ++A L G G V ++D++ ++R++ + A+ + + I T D R ++
Sbjct: 167 AAPGGKTTHIAERLKGTGKVMSLDLHAHKVRLIKQQAERLGLEN-IETKALDARKVQEHF 225
Query: 403 STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLV 462
+ DK+L+DAPCSG GV+ ++ D++ + D E L +Q +L+ + L+K GG LV
Sbjct: 226 ANETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSERLSTIQLAILEKIAPLLKQGGRLV 285
Query: 463 YSTCSIDPEENEERVEAFLLRHPEFSID 490
YSTC+I+ ENE+ ++ FL HPEF D
Sbjct: 286 YSTCTIEKIENEQVIDKFLKEHPEFEWD 313
>gi|340750427|ref|ZP_08687271.1| ribosomal RNA small subunit methyltransferase B [Fusobacterium
mortiferum ATCC 9817]
gi|229420063|gb|EEO35110.1| ribosomal RNA small subunit methyltransferase B [Fusobacterium
mortiferum ATCC 9817]
Length = 433
Score = 176 bits (445), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 124/431 (28%), Positives = 212/431 (49%), Gaps = 37/431 (8%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
F+ +L ++ +T++ G IR + +LD+ I D++T + + + ILRI Y+I
Sbjct: 28 FKENNLSKKERGFITELFYGVIRNKIFLDYEI-----DKRTTTIKKDWIRNILRISMYQI 82
Query: 162 VKLDMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQAR 221
++ V+ E LAK G +NG+LR S E +
Sbjct: 83 SFMNSDDKGVIWEATELAKKKFSVPVGKFINGVLR---------SYQREWQEDVKELKES 133
Query: 222 ALATIY-SHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRK----GVTRADLVM 276
IY S+P W + G+EE + P S R N K +
Sbjct: 134 GKNYIYLSYPEWFYNKLVSEYGEEEGELFLQSLKKIPYISFRVNRLKYSCEEFEKLLEEK 193
Query: 277 QLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPG 336
+++++K +D V +G+ ++ + ++G VQD S+ L ++P+P
Sbjct: 194 KIDIIK---------KVDSVYYVDSGI--LLYSDEFRDGKIIVQDASSYLSARNLNPKPD 242
Query: 337 QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADL 396
+S++D C+APGGKT + + +G + A+DI +L+++ E V+ ++RT+ D
Sbjct: 243 ESVLDTCSAPGGKTAVLGELMENRGELLALDIYPHKLKLIEENCHKCGVD-IVRTVKMDA 301
Query: 397 RTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVK 456
R + K DK+L+DAPCSG GVL K+ + +N+ E++EEL LQ E+L++AS ++K
Sbjct: 302 RKLKEQGK-KFDKILVDAPCSGYGVLRKKPEAIYNKNSENVEELAKLQFEILESASQVLK 360
Query: 457 PGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKH---GFFFSDPIK 513
G LVYSTC+I EEN E ++ FL ++P F + + +P + + G F D +
Sbjct: 361 DNGELVYSTCTILKEENGENIKKFLEKYPNF--ETVELYIPENVNGSYDNVGGFTVDYKE 418
Query: 514 HSLDGAFAARL 524
LDG + +L
Sbjct: 419 DILDGFYIVKL 429
>gi|363895560|ref|ZP_09322555.1| hypothetical protein HMPREF9629_00837 [Eubacteriaceae bacterium
ACC19a]
gi|361957312|gb|EHL10622.1| hypothetical protein HMPREF9629_00837 [Eubacteriaceae bacterium
ACC19a]
Length = 435
Score = 176 bits (445), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 121/411 (29%), Positives = 216/411 (52%), Gaps = 17/411 (4%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
F+ DLD +T IV G + YLD+ I + + FS + IL + F+EI
Sbjct: 30 FKNIDLDYEMRGFITYIVYGVLSNINYLDYFIK--QYSDIAFSKISKKAKLILEMAFFEI 87
Query: 162 VKLDMP-PYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPK-LEGND-RA 218
+ ++ YA V+ENV+L K A + VN +LRK D N++ + K E +D +
Sbjct: 88 IFMNSSVNYASVNENVKLVK-KYDNRAKSFVNAVLRKFT--SDENNINIAKNYEFSDIKE 144
Query: 219 QARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLV-MQ 277
+ + T YS ++ +R E +L+ P +R N K D+ ++
Sbjct: 145 DVKYILTRYSVSEYIAQRLLDNYKIEFTQELLRSMADTPDIFIRGNRLK----TDIYDLK 200
Query: 278 LNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQ 337
NL KL ++ + + +K +++ + + K+GL +VQD ++ V V+ P+ +
Sbjct: 201 TNLQKLGNKFDIIDEENMIVSLK-NFKDISKNDMYKKGLFSVQDYASMKTVLVLSPKSYE 259
Query: 338 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR 397
++D CAAPGGK+++MA + +G + ++DI+ +L++L E K ++ +I+T D
Sbjct: 260 DVLDICAAPGGKSVFMAELMENKGSITSLDISSKKLKLLEEQTKRLGID-IIKTYVNDAT 318
Query: 398 TFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKP 457
+ K DKVL D PCSG+G+L ++ ++R+ ++ ED++ + +Q ++L ASL +K
Sbjct: 319 IYKSEYKNKFDKVLCDVPCSGIGILRRKPEIRY-KKFEDIQNIIDVQKQILKNASLYLKK 377
Query: 458 GGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFF 508
G+LVYSTC++ EEN + + FL ++ F + + P + GFF+
Sbjct: 378 DGILVYSTCTLGKEENSDVISEFLDKNGNFELLSQNEYYPH-IDSTDGFFY 427
>gi|427391865|ref|ZP_18886089.1| ribosomal RNA small subunit methyltransferase B [Actinobaculum
massiliae ACS-171-V-Col2]
gi|425731832|gb|EKU94645.1| ribosomal RNA small subunit methyltransferase B [Actinobaculum
massiliae ACS-171-V-Col2]
Length = 470
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 130/442 (29%), Positives = 219/442 (49%), Gaps = 44/442 (9%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDM 166
L+ D T++ GT+R + D +I C ++ ++ +L +LR+G +++++L
Sbjct: 50 LNKLDASFATNLTYGTLRLQGRYDAVIAR-CSQDRPVDDIDAPVLDLLRMGCHQLIELGT 108
Query: 167 PPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATI 226
PP+A ++E V +A+ L G G +N ILR++ D + L + + L+
Sbjct: 109 PPHAAINETVAIARNELGQGTGGFINAILRRVSERGDWREV----LRSTSANKEQFLSVW 164
Query: 227 YSHPVWMV---RRWTKYLGQEEAIKLMVWNNSDPS-FSLRANS------RKGVTRADLVM 276
YSHP W+V R G+E+A++ ++ +++P+ +LRA ++ + RA +
Sbjct: 165 YSHPRWIVAELRESLAQFGREDALEDVLAADNEPAKVALRARDMSVDALKERIERAKMAW 224
Query: 277 QLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAV-----V 331
L VP + L R+ +++ +QDE + LV V V
Sbjct: 225 SAPYL---VPSAVLLAHGNPGRLWP----------VQDAAAGIQDEGSQLVSLVFANLEV 271
Query: 332 DPQPGQSIVDCCAAPGGKTLYMASCLSGQG-LVYAIDINKGRLRILNETAKLHQVNSVIR 390
+ +D CA PGGKT +A+ + +G V+A + + RL ++ E + + + ++
Sbjct: 272 SAGTDERWLDMCAGPGGKTATIAALAAQRGATVFANEPHAHRLDLVAEA--VERFSDIVA 329
Query: 391 TIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDA 450
D R D D+VL+DAPCSGLG L +R + RW +R ED+EEL LQ +LLD+
Sbjct: 330 LREGDGREIGDLEPNGYDRVLVDAPCSGLGALRRRPEARWRKRPEDIEELTQLQGQLLDS 389
Query: 451 ASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDP------ADGLVPSDFVTKH 504
A V+PGGVL+Y+TCS E +EAFL RHPE + ++ LVP
Sbjct: 390 AYQAVRPGGVLLYTTCSPVVRETAGVIEAFLARHPEAEVADVTQTANSEALVPVSSTGTT 449
Query: 505 GFFFSDPIKHSLDGAFAARLVR 526
+ D H D + AR+++
Sbjct: 450 AQLWPD--LHHADAMYMARILK 469
>gi|291557813|emb|CBL34930.1| ribosomal RNA small subunit methyltransferase RsmB [Eubacterium
siraeum V10Sc8a]
Length = 439
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 114/388 (29%), Positives = 204/388 (52%), Gaps = 17/388 (4%)
Query: 101 GFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYE 160
F D D RD + G + R LD+LI E F ++ +++ILR+GFY+
Sbjct: 29 AFTQNDADRRDKAFSAALFYGVLERRMTLDYLIRYYSGIE--FDKIKTAVVEILRMGFYQ 86
Query: 161 IVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQ 219
++ ++ +P A V+E+V L A VN ILR L++ + L G +
Sbjct: 87 LLFMNSVPDSAAVNESVALCDYCNSTKAKGYVNAILR--TFLRNEKQIDYGNLTGEAK-- 142
Query: 220 ARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLN 279
L+ YS P W+V++W LG++ A++++ P R N+ + T D++ +L
Sbjct: 143 ---LSIEYSCPKWLVKKWNSELGEQRAMQMINSCFGRPPIYARVNTVR-YTVDDVIGELE 198
Query: 280 LLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSI 339
+ SL +D I + + + Q+ K+G+ +QD S+ + + P +++
Sbjct: 199 SEGISATKN-SL-IDACIEL-ANTKGIEQSSAYKKGMFHIQDISSQICCKIAAPVFNETV 255
Query: 340 VDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF 399
VD C+APGGKT A ++ +G +Y+ D+ G++ ++ TAK + ++I D F
Sbjct: 256 VDLCSAPGGKTFTCAEIMNDRGRIYSYDLYDGKVSVIANTAKRLDL-TIITAAENDATKF 314
Query: 400 ADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGG 459
+ K D+V+ D PCSGLGV+ ++ ++++ + ++ +E L Q ++++ A+ VKPGG
Sbjct: 315 -NPGIPKADRVICDVPCSGLGVIRRKPEIKY-KPMKQLETLPDTQRKIINNAAEYVKPGG 372
Query: 460 VLVYSTCSIDPEENEERVEAFLLRHPEF 487
LVYSTC++ EN++ V+ FL H +F
Sbjct: 373 TLVYSTCTVSRTENDDIVDEFLKEHSDF 400
>gi|238797213|ref|ZP_04640714.1| Ribosomal RNA small subunit methyltransferase B [Yersinia
mollaretii ATCC 43969]
gi|238718850|gb|EEQ10665.1| Ribosomal RNA small subunit methyltransferase B [Yersinia
mollaretii ATCC 43969]
Length = 431
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 133/418 (31%), Positives = 215/418 (51%), Gaps = 36/418 (8%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDM 166
+ D+D L+ ++ GT+R L+ I L + + + + ++ +G Y+++ +
Sbjct: 36 ISDKDRALLQELCFGTLRVLPQLEWCIQQLM--ARPMTGKQRVFHYLIMVGLYQLIYTRI 93
Query: 167 PPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATI 226
P +A + E V A RP L+NG+LR+ + L + N+ ++
Sbjct: 94 PHHAALAETVEGATALKRPQLKGLINGVLRQF----QRQQVELLERAANNESR------- 142
Query: 227 YSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQ-- 284
Y HP W++ R K ++ +++ NN P LR N R TR++ L LLK
Sbjct: 143 YLHPSWLLAR-IKLAYPDQWQQILDANNQKPPMWLRVN-RLHHTRSEY---LELLKQADI 197
Query: 285 --VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 342
VPH+L + +R+ T G + G VQD SA V ++DP G+ I+D
Sbjct: 198 DAVPHDL---YSDALRLITPCAVSALPGF-ELGWATVQDASAQGCVDLLDPHNGEQILDL 253
Query: 343 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD- 401
CAAPGGKT ++ + + V A+DI++ RL + E + ++++V+R D RT D
Sbjct: 254 CAAPGGKTTHILEA-APKAHVLAVDIDEQRLDRVKENLQRLKLHAVVRV--GDGRTPEDW 310
Query: 402 NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVL 461
+ D++LLDAPCS GV+ + D++W RR D+ EL LQ E+++A +K GGV+
Sbjct: 311 CGDQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQSEIIEAIWPKLKKGGVM 370
Query: 462 VYSTCSIDPEENEERVEAFLLRHPEFS-IDPADGLVPSDFVTKH-----GFFFSDPIK 513
VY+TCSI PEEN++++ AFL RH E ++ VP H GFF++ IK
Sbjct: 371 VYATCSILPEENQQQIAAFLQRHSEAELVETGTTAVPGKQNLPHPEDGDGFFYAKLIK 428
>gi|222153508|ref|YP_002562685.1| ribosomal RNA small subunit methyltransferase [Streptococcus uberis
0140J]
gi|222114321|emb|CAR43000.1| putative ribosomal RNA small subunit methyltransferase
[Streptococcus uberis 0140J]
Length = 440
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 128/428 (29%), Positives = 223/428 (52%), Gaps = 33/428 (7%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L+ +D L+T+IV GT+ + L+ + + D + ++ + +L I Y+++ LD
Sbjct: 40 LNAKDKALITEIVYGTVSRKLTLEWHLSHVIEDR---NRLDKWVYYLLMISLYQLLYLDK 96
Query: 166 MPPYAVVDENVRLAKV-ALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P +A+V++ V +AK GA VN +LR+L N+ LP P L + + + +
Sbjct: 97 VPQHAIVNDAVNIAKNRGNNRGAEKFVNAVLRQLT----NHPLPDPSL---IKRKNKRYS 149
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQ 284
+YS P W+V + G+E A+K+M S SL + V D ++ ++K
Sbjct: 150 ILYSIPTWLVIKLIDQFGEERALKIM------ESLSLNSKISLRVINLD---KMEIIKEA 200
Query: 285 VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 344
+ E+SL + + G + + G +QDES+ LV + Q ++D C+
Sbjct: 201 LDAEMSLLSPCGLTKENGYMAL--HDFFQRGDITIQDESSQLVAPTLAIQENDIVLDACS 258
Query: 345 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR----TFA 400
APGGKT +MAS L G V A+DI++ +L ++ E A+ ++ I T D R F
Sbjct: 259 APGGKTSHMASYLKT-GKVVALDIHEHKLDLVRENAERLGLSEKIETRLLDARQVHEVFG 317
Query: 401 DNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGV 460
+S DK+L+DAPCSG+G++ ++ D+++N+ L+D+++L+ +Q E+L + ++ GG+
Sbjct: 318 PDS---FDKILVDAPCSGIGLIRRKPDIKYNKDLQDLKQLQAVQLEILSSVCQTIRKGGI 374
Query: 461 LVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAF 520
+ YSTC+I EEN + ++ FL HP F + K G P + DG F
Sbjct: 375 ITYSTCTIFDEENVQVIKRFLKEHPNFEQIKLKHTQAE--IVKDGCLVITPEQFQTDGFF 432
Query: 521 AARLVRAF 528
A++ R
Sbjct: 433 IAQIRRVL 440
>gi|197302406|ref|ZP_03167462.1| hypothetical protein RUMLAC_01134 [Ruminococcus lactaris ATCC
29176]
gi|197298527|gb|EDY33071.1| ribosomal RNA small subunit methyltransferase B [Ruminococcus
lactaris ATCC 29176]
Length = 458
Score = 175 bits (444), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 134/386 (34%), Positives = 194/386 (50%), Gaps = 30/386 (7%)
Query: 153 ILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPK 211
ILR G Y++ +D +P +AV E V+LA G VNG+LR + D P
Sbjct: 83 ILRSGVYQLKYMDSVPDHAVCSEAVKLAVRKGFSGLKGYVNGVLRSVARGLDTLDYPQEG 142
Query: 212 LEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTR 271
+E AL+ YS P W++R W K G+E + + ++R K VT
Sbjct: 143 IE--------ALSIQYSIPTWILRLWEKSYGEEVTRTMAADFLKERPVTIRCCQNK-VTP 193
Query: 272 ADLVMQLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVV 331
L +L + V L FI +G + +G VQD S+ LV +
Sbjct: 194 EQLKKELEQEGVTVQEHPYLPYAFFI---SGYDYLESLDCFWKGWFTVQDVSSMLVAELA 250
Query: 332 DPQPGQSIVDCCAAPGGKTLYMASCL-------SGQGLVYAIDINKGRLRILNETAKLHQ 384
P+ G IVD CAAPGGK+L++A L + +G V A D+ + ++ ++ E +
Sbjct: 251 APEAGNKIVDICAAPGGKSLHIAEKLWITDRNEAKKGEVEARDLTEYKVGLIEENIARME 310
Query: 385 VNSVIRTIHADLR--TFADNS-TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELK 441
+ IHA R T D + K D VL D PCSGLGV K+ DL++ + ED++EL
Sbjct: 311 ----LENIHAVCRDATVPDEAWKEKADIVLADLPCSGLGVFGKKPDLKYRVKEEDLKELA 366
Query: 442 ILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPA-DGLVP--S 498
LQ ++L+ A +VK GG L+YSTC+IDP ENEE V FL ++P+FS++ + L P +
Sbjct: 367 GLQRKILENAQAMVKKGGTLLYSTCTIDPMENEENVHWFLKKYPQFSLNSIREKLCPQLA 426
Query: 499 DFVTKHGFFFSDPIKHSLDGAFAARL 524
+ V + G P H DG F ARL
Sbjct: 427 ESVEEEGCIQLLPGIHCSDGFFIARL 452
>gi|33239874|ref|NP_874816.1| tRNA and rRNA cytosine-C5-methylase [Prochlorococcus marinus subsp.
marinus str. CCMP1375]
gi|33237400|gb|AAP99468.1| tRNA and rRNA cytosine-C5-methylase [Prochlorococcus marinus subsp.
marinus str. CCMP1375]
Length = 438
Score = 175 bits (444), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 129/417 (30%), Positives = 207/417 (49%), Gaps = 29/417 (6%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLL-CHDEKTFSSMEPLLLQILRIGFYE 160
FR L D L T++ G IR R LD C + C + + PLL +L +G Y+
Sbjct: 33 FRKYSLSIADRALATELACGAIRQRLVLD---CWIDCLAKVSAEKQPPLLRWLLHVGLYQ 89
Query: 161 IVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKL-EGNDRA 218
I +D +P A V+ V LAK +VN ILR+ + +D LP L E DR
Sbjct: 90 IFYMDRIPVSAAVNTTVELAKKKNLKSLAPVVNAILREAIRARDLGK-ELPGLIEPQDR- 147
Query: 219 QARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRA------ 272
L+ +S P W+ ++ G++ A + N P+ LR NS++ ++
Sbjct: 148 ----LSLKHSIPTWLAYELIEWKGEKGAEIIAKAFNQAPAIDLRVNSKRSSVKSLRQKFQ 203
Query: 273 DLVMQLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVD 332
D ++ L++ P+ L+ V +G ++ Q ++G +VQD SA VV +++
Sbjct: 204 DSGIESKLIE-TCPYGLT--------VTSGAGDLRQWPGYEQGEWSVQDRSAQWVVPLLE 254
Query: 333 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLR--ILNETAKLHQVNSVIR 390
P+ G+ ++D C+APGGKT ++A ++ G ++A+D + RL+ LN H +
Sbjct: 255 PRSGEVVLDACSAPGGKTTHLAELMNDIGEIWAVDRSPKRLQKVSLNAARLGHHCIKFLS 314
Query: 391 TIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDA 450
+L + +K+LLD PCSGLG L++ D RW +E L LQ LL+
Sbjct: 315 ADATNLIELKPSWKGYFNKILLDVPCSGLGTLARNPDARWRMSPSQIEGLIQLQFNLLEG 374
Query: 451 ASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFF 507
L+KPGG +VYSTC+I P+EN ++E F+ H +++ + P D GF+
Sbjct: 375 ILPLLKPGGRIVYSTCTIHPDENFRQIEKFVSMHQPLNLERQKQIWPGDAQGGDGFY 431
>gi|42519411|ref|NP_965341.1| SUN protein [Lactobacillus johnsonii NCC 533]
gi|41583699|gb|AAS09307.1| SUN protein [Lactobacillus johnsonii NCC 533]
Length = 438
Score = 175 bits (444), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 135/434 (31%), Positives = 227/434 (52%), Gaps = 44/434 (10%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD 165
DL D L T IV GTI+++ +L++ + L + S ++PLLL + Y+ L+
Sbjct: 34 DLKPADKALATRIVYGTIQYKIFLEYQLKPLIKTKLRDSFLKPLLL----MSAYQYFFLE 89
Query: 166 -MPPYAVVDENVRLAKVALRPGAGN--LVNGILRKLVLLKDNNSLPLPKLEGNDRAQARA 222
+P A+ DE +LAK + +G+ L+NGILR L + LP ND +
Sbjct: 90 KVPANAIFDEANKLAKKYSKRNSGSYKLINGILR--ALERQGEILP----PTNDLVEY-- 141
Query: 223 LATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKG--------VTRADL 274
L+ S P W+V + G+ + +++V +N + S+R +++ + + +
Sbjct: 142 LSIKESFPKWLVEYLLDHFGENKTKEILVRSNQPAANSIRMTTKESDFEEIKEELKKDNF 201
Query: 275 VMQLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQ 334
+ + L PH L+L+ K G V Q L K G +QD +A L V +
Sbjct: 202 SFEESSL---TPHNLNLN-------KGG---VAQTALFKNGKITIQDAAASLAVDAFYFK 248
Query: 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHA 394
+ ++D C+APGGKT+ +A L+ G V A+DI++ +LR++ A+ V+ +RT
Sbjct: 249 GSEQVLDACSAPGGKTVQIAENLT-TGSVIALDIHENKLRLVRNAAERLHVSDKVRTKAL 307
Query: 395 DLRTFADN-STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASL 453
D R + + + DK+L+DAPCSGLG++ ++ ++R+ + L D++ L +Q +L++ S
Sbjct: 308 DARKAKEYFNQGQFDKILVDAPCSGLGLIRRKPEIRYEKSLNDIKNLAKIQLAILESVSG 367
Query: 454 LVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPAD-GLVPSDFVTKHGFFFSDPI 512
L+ GG LVYSTC+I EE+E V+ FL HP+F + P G +P + + F P
Sbjct: 368 LLANGGELVYSTCTISYEEDEGVVKQFLKLHPDFELIPVQVGKLPKQEMVR--IF---PS 422
Query: 513 KHSLDGAFAARLVR 526
DG F A+L +
Sbjct: 423 SDGSDGFFIAKLKK 436
>gi|417936745|ref|ZP_12580052.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
infantis X]
gi|343400261|gb|EGV12781.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
infantis X]
Length = 437
Score = 175 bits (444), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 124/382 (32%), Positives = 201/382 (52%), Gaps = 31/382 (8%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPY 169
D LVT++V GT+ + L+ + D S L +L + Y++ LD +P +
Sbjct: 42 DKGLVTELVYGTVARKLTLEWYLSHFIEDRDKLDSW---LYVLLLMSVYQLQYLDKLPDH 98
Query: 170 AVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSH 229
AVV+E V LAK+ + G+ LVN +LR++ L++ LP + R R + YS
Sbjct: 99 AVVNEAVELAKLR-KKGSEKLVNAVLRRI--LREG----LPDITSIKRKNKRD-SIAYSL 150
Query: 230 PVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHEL 289
PVW+V + + G+E A + SL ++ + DL + + L +
Sbjct: 151 PVWLVSKLKEEYGEERAQAIFE--------SLLQRNKASIRVTDLTRKEEIKALLDASDS 202
Query: 290 SLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGK 349
+L ++ + + L EGL +QDES+ LV +D Q + ++D CAAPGGK
Sbjct: 203 ALSASGLVKEQGHFAGL---DLFSEGLITIQDESSQLVAPTLDLQGEEQVLDACAAPGGK 259
Query: 350 TLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT----FADNSTV 405
T +MAS L+ G V A+D+ +L ++ E A+ V ++T D R F N
Sbjct: 260 TAHMASYLT-TGQVTALDLYDHKLTLIQENAQRLGVADRVQTQKLDARKVHEFFGKN--- 315
Query: 406 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465
+ DK+L+DAPCSG+G+L ++ D+++N+ D L+ +Q E+L + ++ GG++ YST
Sbjct: 316 QFDKILVDAPCSGIGLLRRKPDIKYNKDTADFASLQEIQLEILGSVCQTLRKGGIITYST 375
Query: 466 CSIDPEENEERVEAFLLRHPEF 487
C+I EEN + V+AFL HPEF
Sbjct: 376 CTIVSEENFQVVQAFLESHPEF 397
>gi|296327374|ref|ZP_06869923.1| ribosomal RNA small subunit methyltransferase B [Fusobacterium
nucleatum subsp. nucleatum ATCC 23726]
gi|296155489|gb|EFG96257.1| ribosomal RNA small subunit methyltransferase B [Fusobacterium
nucleatum subsp. nucleatum ATCC 23726]
Length = 435
Score = 175 bits (443), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 121/409 (29%), Positives = 207/409 (50%), Gaps = 28/409 (6%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
F+T +++ ++ +T+I G IR +++LD++I ++ T + + +LRI Y+I
Sbjct: 28 FKTLNVNSKEKAFITEIFYGVIRNKKFLDYII-----EKNTKEIKKEWIRNLLRISIYQI 82
Query: 162 VKLDMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQAR 221
+D VV E LAK +NG LR + KD L L +L+ +
Sbjct: 83 TFMDSDDKGVVWEGTELAKKKYGIPISKFINGTLRNYLRNKD---LELKRLD-----DEK 134
Query: 222 ALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLL 281
+YS P W K G E + + P S+R N K + + L
Sbjct: 135 NYEVLYSIPKWFYNTLEKQYGNENLKQAITSLKKIPYLSVRVNKLK-YSEEEFEEFLKEK 193
Query: 282 KLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVD 341
+Q+ ++ D V +GL +I + K G QD S+ L +D P + ++D
Sbjct: 194 DIQIIKKV----DTVYYVNSGL--IINSEEFKTGKIIAQDASSYLAAKNLDAMPNELVLD 247
Query: 342 CCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD 401
CAAPGGKT +A + G + AIDI++ ++++++ K +++ +++ I D R +
Sbjct: 248 ICAAPGGKTAVLAENMKNMGEIIAIDIHQHKIKLIDTNMKKLRID-IVKAIVMDARN-VN 305
Query: 402 NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVL 461
K DK+L+D PCSG GV+ K+ ++ +++ E++EEL LQ E+L++A+ ++K GG L
Sbjct: 306 KQGRKFDKILVDVPCSGYGVIRKKPEILYSKNRENVEELAKLQLEILNSAADILKDGGEL 365
Query: 462 VYSTCSIDPEENEERVEAFLLRHPEFSID----PADGLVPSDFVTKHGF 506
+YSTC+I EEN ++ FL EF ++ P + V DF + GF
Sbjct: 366 IYSTCTITDEENTNNIKKFLEERKEFKVEKLYIPEN--VLGDFDSLGGF 412
>gi|451818110|ref|YP_007454311.1| ribosomal RNA small subunit methyltransferase B [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
gi|451784089|gb|AGF55057.1| ribosomal RNA small subunit methyltransferase B [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
Length = 438
Score = 175 bits (443), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 129/420 (30%), Positives = 220/420 (52%), Gaps = 18/420 (4%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD 165
+L+D+D L+T+IV G +R ++ LD +I D K M+ +L ILR+ Y++ LD
Sbjct: 33 ELNDKDKALLTEIVYGVLRRKKTLDIIISNFVKDIKL---MDRNILNILRVAIYQMNFLD 89
Query: 166 -MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P YA +E V AK + LVNGILR D+ +P K++ A
Sbjct: 90 KIPSYAACNEAVEEAK-EISENDSKLVNGILRNFTKNPDDIEVPGNKID--------EYA 140
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQ 284
+S WM+R K G+ + K+M N+ P S+R N K D V + L L+
Sbjct: 141 YKFSFEPWMIRLLIKQYGEALSKKIMSGLNTIPQVSVRVNELKA--DYDEVFE-ELEALE 197
Query: 285 VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 344
E E I +K G +++ L EG VQDESA ++ +++ + +++D C+
Sbjct: 198 YDVEEGAVCPEAICIKGG-KSIENNPLFNEGKITVQDESAMIIAPLLELEENMTVIDLCS 256
Query: 345 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNST 404
APGGKT ++A L G V A DI++ +L ++ E + + +V ++ D
Sbjct: 257 APGGKTTHIAEILQNTGKVLAFDIHESKLGLIKENCERLGITNVEVNVN-DATKLNPELV 315
Query: 405 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464
D++L+D PCSG+G++ K+ +++WN+ D+ EL +Q ++++ A +K GG+++YS
Sbjct: 316 SSSDRILIDVPCSGIGIIRKKPEIKWNKTRSDLRELIPIQRDIMENAWQYLKKGGIMIYS 375
Query: 465 TCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARL 524
TC+++ EENEE +E F+ +H + +I ++ V + ++DG F A+L
Sbjct: 376 TCTLNKEENEENIEWFIDKHKDCNIKKIFIGNQNNLVYNRNGSLTIIPNENMDGFFMAKL 435
>gi|296110622|ref|YP_003621003.1| rRNA methylase () [Leuconostoc kimchii IMSNU 11154]
gi|339490286|ref|YP_004704791.1| 16S rRNA methyltransferase GidB [Leuconostoc sp. C2]
gi|295832153|gb|ADG40034.1| rRNA methylase (putative) [Leuconostoc kimchii IMSNU 11154]
gi|338851958|gb|AEJ30168.1| 16S rRNA methyltransferase B [Leuconostoc sp. C2]
Length = 457
Score = 175 bits (443), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 126/426 (29%), Positives = 215/426 (50%), Gaps = 37/426 (8%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
+ L + D RL+T +V G I+ R ++ + ++K ++ + ++L +++
Sbjct: 36 IKQHQLGEADKRLLTTLVYGVIQHRLTFEYWLTPFIGNKK----IDAWVRELLYTAMFQM 91
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVL--LKDNNSLPLPKLEGNDRA 218
LD +P +A+ +E++ +AK+ G G V IL + L+D + + P
Sbjct: 92 EFLDKIPEHAIFNESIEVAKILGHVGTGKFVTAILHNIARQGLRDIDDIKDP-------- 143
Query: 219 QARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQL 278
+ L+ S PVW++ K G+E+ L+ N PS S+R N+ T D+V L
Sbjct: 144 -IQRLSIEKSLPVWLINELVKQHGEEKTRALVETINDAPSQSIRVNTVVA-TDDDVVKSL 201
Query: 279 NLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVD-PQPGQ 337
SL D V G +V + +G +QDESA L V + +
Sbjct: 202 ESENYTTVK--SLVADHAYIVSGG--HVASSKAYHDGWLTIQDESAMLPVESMHLTAEVK 257
Query: 338 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR 397
+I+D AAPGGKT +A C+S + A+DI++ +++++N A+ V I+T D R
Sbjct: 258 TILDAAAAPGGKTTQIAQCISADAKITALDIHEHKIKLINNNAQRLHVADRIQTRILDAR 317
Query: 398 TFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKP 457
+ K D++L+DAPCSG G+L ++ ++R+++ LED++ L LQ ++LD+ S V
Sbjct: 318 KVPNEIDTKFDRILVDAPCSGFGLLRRKPEIRYDKTLEDVQNLAQLQFDILDSVSQNVAD 377
Query: 458 GGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADG--------------LVPSDFVTK 503
G++VYSTC+I +EN++ V FLL H EF + P + P+D+ T
Sbjct: 378 NGMMVYSTCTILSQENDDVVTKFLLAHTEFELIPTQTVKNLKSNRGEDVLHVYPNDYQTD 437
Query: 504 HGFFFS 509
GFF +
Sbjct: 438 -GFFVA 442
>gi|224476326|ref|YP_002633932.1| putative NusB_Sun RNA binding protein [Staphylococcus carnosus
subsp. carnosus TM300]
gi|222420933|emb|CAL27747.1| putative NusB_Sun RNA binding protein [Staphylococcus carnosus
subsp. carnosus TM300]
Length = 435
Score = 175 bits (443), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 123/423 (29%), Positives = 221/423 (52%), Gaps = 40/423 (9%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
+ +L D L+T++V GTI+ + L++ + + ++ + +L + Y+
Sbjct: 30 LKANELSRADKNLLTELVYGTIKRKITLEYYLKPFVQ-----TRIKGWMRHLLWMSIYQY 84
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGN--LVNGILRKLVLLKDNNSLPLPKLEGNDRA 218
LD +P +A+++E V +AKV R G N +VNGILR ++ ++LP P +D+
Sbjct: 85 QYLDKVPDHAIINEAVEIAKV--RGGLHNSKVVNGILRNMM----RSNLPNPADIKDDKQ 138
Query: 219 QARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRAN-SRKGVTRADLVMQ 277
+ ++ +YS P W+V+ W + G + ++ P ++R N +RK V +A + Q
Sbjct: 139 R---ISIMYSMPKWIVKHWVTHYGVDTTERIAQSMLERPGQTVRVNLTRKTVAQA--IQQ 193
Query: 278 LNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQ 337
L V + + E+ +G + V ++ K+G+ ++QD+S+ V ++ P G
Sbjct: 194 LQDEGYTVVQDSDI---EYCLHASG-KPVAESRAFKDGIVSIQDKSSMFVAQILAPAEGD 249
Query: 338 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR 397
I+D C+APGGK A L G G V A DI++ ++ ++ + ++ +V H D +
Sbjct: 250 DILDACSAPGGKACQTAELLDGTGHVDATDIHEHKIDLIEHNVRKLRLKNVTAFQHDDTK 309
Query: 398 TFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKP 457
+ DK+L+DAPCSGLGVL + ++++ + E + L LQ E+++ VKP
Sbjct: 310 PYEK----MYDKILVDAPCSGLGVLRHKPEIKYMQTPETINNLVELQLEIMNNIKDSVKP 365
Query: 458 GGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADG-----------LVPSDFVTKHGF 506
GGV+VYSTC+I+ ENE + FL ++ +F +P ++P DF + GF
Sbjct: 366 GGVIVYSTCTIEQMENENVIYTFLKQNKDFEFEPFSHPRTKEEVKTLQILPQDFDSD-GF 424
Query: 507 FFS 509
F +
Sbjct: 425 FIT 427
>gi|19746552|ref|NP_607688.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus pyogenes
MGAS8232]
gi|19748764|gb|AAL98187.1| putative RNA-binding Sun protein [Streptococcus pyogenes MGAS8232]
Length = 440
Score = 175 bits (443), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 132/433 (30%), Positives = 219/433 (50%), Gaps = 41/433 (9%)
Query: 104 TKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVK 163
K L +D L+T+IV GT+ + L+ L H K ++ + +L + Y+++
Sbjct: 37 NKALSAKDRALLTEIVYGTVSRKISLE---WYLAHYVKDRDKLDKWVYYLLMLSLYQLIY 93
Query: 164 LD-MPPYAVVDENVRLAKV-ALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQAR 221
LD +P +A+V++ V +AK + GA VN ILR+ S PLP +E R + +
Sbjct: 94 LDKLPAHAIVNDAVGIAKNRGNKKGAEKFVNAILRQFT------SHPLPDMETIKR-RNK 146
Query: 222 ALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLL 281
+ YS PVW+V++ G + A+ +M S +R+ + VT + L
Sbjct: 147 YYSVKYSLPVWLVKKLEDQFGSDRAVAIM------ESLFVRSKASIRVT--------DPL 192
Query: 282 KLQVPHELSLHLDEFIRVKTGLQ----NVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQ 337
KL+ E +L + + TGL + + G +QDES+ LV ++
Sbjct: 193 KLEEVAE-ALDAERSLLSATGLTKASGHFAASDYFTNGDITIQDESSQLVAPTLNIDGDD 251
Query: 338 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR 397
I+D C+APGGKT ++AS L G V A+D+ +L ++ E A V I T D R
Sbjct: 252 IILDACSAPGGKTSHIASYLK-TGKVIALDLYDHKLELVKENANRLGVADNIETRKLDAR 310
Query: 398 T----FADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASL 453
F +S DK+L+DAPCSG+G++ ++ D+++N+ +D L+ +Q E+L +
Sbjct: 311 EVHRHFEKDS---FDKILVDAPCSGIGLIRRKPDIKYNKESQDFNALQAIQLEILSSVCQ 367
Query: 454 LVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIK 513
++ GG++ YSTC+I EEN + +EAFL HP F + +D + K G+ P +
Sbjct: 368 TLRKGGIITYSTCTIFDEENRQVIEAFLQSHPNFEQVKLNH-TQADII-KDGYLIITPEQ 425
Query: 514 HSLDGAFAARLVR 526
+ DG F ++ R
Sbjct: 426 YQTDGFFIGQVRR 438
>gi|379795582|ref|YP_005325580.1| hypothetical protein SAMSHR1132_10580 [Staphylococcus aureus subsp.
aureus MSHR1132]
gi|356872572|emb|CCE58911.1| Bacterial Fmu (Sun) [Staphylococcus aureus subsp. aureus MSHR1132]
Length = 435
Score = 175 bits (443), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 128/423 (30%), Positives = 217/423 (51%), Gaps = 48/423 (11%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTF--SSMEPLLLQILRIGFYEIVK 163
DL+ D L T+IV GT++ + LD + K F + ++ + Q+L + Y+ V
Sbjct: 35 DLNAMDKGLFTEIVYGTVKRKYTLDFYL-------KPFVKTKIKAWVRQLLWMSIYQYVY 87
Query: 164 LD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVL--LKDNNSLPLPKLEGNDRAQA 220
LD +P +A+++E V +AK GN+VNGILR ++ L D N + PK
Sbjct: 88 LDKVPNHAIINEAVEIAKERGGFHNGNVVNGILRTIMRSELPDYNEITDPK--------- 138
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRA---DLVMQ 277
+ +A YS P W+V W + G EE ++ PS ++RAN +TRA D++ +
Sbjct: 139 KRMAIEYSMPKWIVDHWVTHYGLEETESILQSFLKSPSTTVRAN----LTRASLEDIIAK 194
Query: 278 LNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQ 337
L +V ++ L + +G Q VI + K+G ++QD+S+ V V++
Sbjct: 195 LQNEGFEVKKDVDL---PYCLHISG-QPVIHSRSFKDGFVSIQDKSSMFVAHVMNVDRHD 250
Query: 338 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR 397
++D C+APGGK ++A L +G V A DI++ ++ ++N K ++ ++ H +
Sbjct: 251 DVLDACSAPGGKACHIAEVLMPEGHVDASDIHEHKIDLINFNIKKLRLTNISAFQHDATK 310
Query: 398 TFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKP 457
+ DK+L+DAPCSGLGV+ + ++++++ E + L LQ E+L+ VK
Sbjct: 311 PYEQ----MYDKILVDAPCSGLGVMRHKPEIKYSQSKEQIASLVDLQLEILENVKNNVKI 366
Query: 458 GGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADG-----------LVPSDFVTKHGF 506
GG ++YSTC+I+ ENE + FL + F +P ++P DF GF
Sbjct: 367 GGEIIYSTCTIEQLENENVIYTFLKNNKNFEFEPFQHPLTGEMVKTLQIMPQDF-NSDGF 425
Query: 507 FFS 509
F +
Sbjct: 426 FIT 428
>gi|419766946|ref|ZP_14293120.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
mitis SK579]
gi|383353590|gb|EID31196.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
mitis SK579]
Length = 437
Score = 175 bits (443), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 137/438 (31%), Positives = 219/438 (50%), Gaps = 49/438 (11%)
Query: 56 EVSPHRAVSAVRLMRIQFGGAFADL-LNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRL 114
+V R+++ L + A++++ LNK KGS L D L
Sbjct: 3 KVETARSLALAVLEDVFINQAYSNIALNKHLKGS-----------------QLSAADKGL 45
Query: 115 VTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVD 173
VT+IV GT+ + L+ + D S L +L + Y++ LD +P +AVV+
Sbjct: 46 VTEIVYGTVARKLTLEWYLSHFIEDRDQLDSW---LYVLLLMSAYQLRYLDKIPDHAVVN 102
Query: 174 ENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWM 233
E V LAKV + G+ LVN +LR++ L++ P + R R + YS PVW+
Sbjct: 103 EAVELAKVR-KKGSEKLVNAVLRRI--LREG----WPDIASIKRKNKRD-SIAYSLPVWL 154
Query: 234 VRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHL 293
V + + G+E A + SL ++ + DL + + L + SL +
Sbjct: 155 VSKLKEEYGEERAQAIFE--------SLLVRNKASIRVTDLSRKEEIQALLEASDSSLSV 206
Query: 294 DEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYM 353
++ + L EG +QDES+ LV +D Q + ++D CAAPGGKT ++
Sbjct: 207 SGLVKEQGHFAG---HDLFAEGAITIQDESSQLVAPTLDLQGDEQVLDACAAPGGKTAHI 263
Query: 354 ASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT----FADNSTVKCDK 409
AS L+ G V A+D+ +L ++ E A+ V ++T D R F NS DK
Sbjct: 264 ASYLT-TGQVTALDLYDHKLDLIQENAQRLGVAERVQTQKLDARKVHELFGQNS---FDK 319
Query: 410 VLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSID 469
+L+DAPCSG+G+L ++ D+++N+ D L+ +Q E+L + ++ GG++ YSTC+I
Sbjct: 320 ILVDAPCSGIGLLRRKPDIKYNKETADFASLQEIQLEILGSVCQTLRKGGIITYSTCTIV 379
Query: 470 PEENEERVEAFLLRHPEF 487
EEN + VEAFL HPEF
Sbjct: 380 SEENFQVVEAFLESHPEF 397
>gi|363891053|ref|ZP_09318336.1| hypothetical protein HMPREF9628_00820 [Eubacteriaceae bacterium
CM5]
gi|361962020|gb|EHL15169.1| hypothetical protein HMPREF9628_00820 [Eubacteriaceae bacterium
CM5]
Length = 436
Score = 175 bits (443), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 121/410 (29%), Positives = 215/410 (52%), Gaps = 17/410 (4%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
F+ DLD +T IV G + YLD+ I + + FS + IL + F+EI
Sbjct: 30 FKNIDLDYEMRGFITYIVYGVLSNINYLDYFIK--QYSDIAFSKISKKAKLILEMAFFEI 87
Query: 162 VKLDMP-PYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPK-LEGND-RA 218
+ ++ YA V+ENV+L K A + VN +LRK D N++ + K E +D +
Sbjct: 88 IFMNSSVNYASVNENVKLVK-KYDNRAKSFVNAVLRKFT--SDENNINIAKNYEFSDVKE 144
Query: 219 QARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLV-MQ 277
+ + T YS ++ +R E +L+ P +R N K D+ ++
Sbjct: 145 DVKYILTRYSVSEYIAQRLLDNYKIEFTQELLRSMADTPDIFIRGNRLK----TDIYDLK 200
Query: 278 LNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQ 337
NL KL ++ + + +K +++ + + K+GL +VQD ++ V V+ P+ +
Sbjct: 201 TNLQKLGNKFDIIDEENMIVSLK-NFKDISKNDMYKKGLFSVQDYASMKTVLVLSPKSYE 259
Query: 338 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR 397
++D CAAPGGK+++MA + +G + ++DI+ +L++L E K ++ +I+T D
Sbjct: 260 DVLDICAAPGGKSVFMAELMENKGSITSLDISSKKLKLLEEQTKRLGID-IIKTYVNDAT 318
Query: 398 TFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKP 457
+ K DKVL D PCSG+G+L ++ ++R+ ++ ED++ + +Q ++L ASL +K
Sbjct: 319 IYKSEYKNKFDKVLCDVPCSGIGILRRKPEIRY-KKFEDIQNIIDVQKQILKNASLYLKK 377
Query: 458 GGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFF 507
G+LVYSTC++ EEN + + FL ++ F + + P + GFF
Sbjct: 378 DGILVYSTCTLGKEENSDVISEFLDKNGNFELLSQNEYYPH-IDSTDGFF 426
>gi|167750828|ref|ZP_02422955.1| hypothetical protein EUBSIR_01811 [Eubacterium siraeum DSM 15702]
gi|167656263|gb|EDS00393.1| ribosomal RNA small subunit methyltransferase B [Eubacterium
siraeum DSM 15702]
Length = 439
Score = 175 bits (443), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 114/388 (29%), Positives = 204/388 (52%), Gaps = 17/388 (4%)
Query: 101 GFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYE 160
F D D RD + G + R LD+LI E F ++ +++ILR+GFY+
Sbjct: 29 AFTQNDADRRDKAFSAALFYGVLERRMTLDYLIRYYSGIE--FDKIKTAVVEILRMGFYQ 86
Query: 161 IVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQ 219
++ ++ +P A V+E+V L A VN ILR L++ + L G +
Sbjct: 87 LLFMNSVPDSAAVNESVALCDYCNSTKAKGYVNAILR--TFLRNEKQIDYGNLTGEAK-- 142
Query: 220 ARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLN 279
L+ YS P W+V++W LG++ A++++ P R N+ + T D++ +L
Sbjct: 143 ---LSIEYSCPKWLVKKWNSELGEQRAMQMINSCFGRPPIYARVNTVR-YTVDDVIGELE 198
Query: 280 LLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSI 339
+ SL +D I + + + Q+ K+G+ +QD S+ + + P +++
Sbjct: 199 SEGISAAKN-SL-IDACIEL-ANTKGIEQSSAYKKGMFHIQDISSQICCKIAAPVFNETV 255
Query: 340 VDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF 399
VD C+APGGKT A ++ +G +Y+ D+ G++ ++ TAK + ++I D F
Sbjct: 256 VDLCSAPGGKTFTCAEIMNDRGRIYSYDLYDGKVSVIANTAKRLGL-TIITAAENDATKF 314
Query: 400 ADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGG 459
+ K D+V+ D PCSGLGV+ ++ ++++ + ++ +E L Q ++++ A+ VKPGG
Sbjct: 315 -NPDIPKADRVICDVPCSGLGVIRRKPEIKY-KPMKQLETLPDTQRKIINNAAEYVKPGG 372
Query: 460 VLVYSTCSIDPEENEERVEAFLLRHPEF 487
LVYSTC++ EN++ V+ FL H +F
Sbjct: 373 TLVYSTCTVSRTENDDIVDEFLKEHSDF 400
>gi|336391238|ref|ZP_08572637.1| 16S rRNA methyltransferase B [Lactobacillus coryniformis subsp.
torquens KCTC 3535]
Length = 450
Score = 175 bits (443), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 138/431 (32%), Positives = 216/431 (50%), Gaps = 49/431 (11%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
+ L D L+T++V G I+ + LD + K +E Q LR+ Y++V L
Sbjct: 38 EQLQPADASLLTNLVYGVIQRQLTLDFYLKPFI---KKPQRLERWARQNLRVAVYQMVYL 94
Query: 165 D-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARAL 223
D +P A+ E +AK G L+ ILR++ +P+L R L
Sbjct: 95 DKIPNRAIFYEATEIAKKMGNRGVAGLMTAILRQI------ERQGVPRLTTISEPLKR-L 147
Query: 224 ATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVM-QLNLLK 282
+ S P W+V + LG+++ ++ N + S+R N+ + D V +L L
Sbjct: 148 SISASVPEWLVAKLIDQLGEKKTEAILQTINQPAAASIRVNT--AIATVDEVQAELAELG 205
Query: 283 LQV-PHELSLHLDEFIRVKTGLQNVIQAGLLK------EGLCAVQDESAGLVVAVVDPQP 335
L+ P ELS GL V Q G L G VQDES+ LV A + +P
Sbjct: 206 LETTPSELS---------PVGL--VRQGGFLAGTTAFAYGQYTVQDESSMLVAASMQIEP 254
Query: 336 GQSIVDCCAAPGGKTLYMASCLSGQ--GLVYAIDINKGRLRILNETAKLHQVNSVIRTIH 393
++D CAAPGGKT ++AS LS + G V A D++ +++++ + AK V V+
Sbjct: 255 QHQVLDACAAPGGKTTHIASYLSAEAGGHVEAFDLHPHKVKLIKDNAKRLHVADVVNARA 314
Query: 394 ADLRTFADNSTVKC-DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAAS 452
D R D K D+VL+DAPCSGLG++ ++ ++++ R+ ED+ L+ +Q E+LD+ +
Sbjct: 315 FDARKLRDVVANKSFDRVLVDAPCSGLGLMRRKPEIKYTRQPEDLLNLQKIQLEILDSVA 374
Query: 453 LLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEF-------------SIDPADGLVPSD 499
+ VKPGG+L YSTC+I EEN++ ++ FL +H EF + P L P D
Sbjct: 375 IKVKPGGILTYSTCTIVDEENQDVIKQFLAKHAEFEPIPVHTDKALKVATTPYLRLYPDD 434
Query: 500 FVTKHGFFFSD 510
+ T GFF +
Sbjct: 435 YGTD-GFFICN 444
>gi|383480362|ref|YP_005389256.1| ribosomal RNA small subunit methyltransferase protein Sun
[Streptococcus pyogenes MGAS15252]
gi|383494344|ref|YP_005412020.1| ribosomal RNA small subunit methyltransferase protein Sun
[Streptococcus pyogenes MGAS1882]
gi|378928352|gb|AFC66558.1| ribosomal RNA small subunit methyltransferase protein Sun
[Streptococcus pyogenes MGAS15252]
gi|378930071|gb|AFC68488.1| ribosomal RNA small subunit methyltransferase protein Sun
[Streptococcus pyogenes MGAS1882]
Length = 440
Score = 175 bits (443), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 133/432 (30%), Positives = 218/432 (50%), Gaps = 41/432 (9%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
K L +D L+T+IV GT+ + L+ L H K ++ + +L + Y++ L
Sbjct: 38 KALSAKDRALLTEIVYGTVSRKISLE---WYLAHYVKDRDKLDKWVYYLLMLSLYQLTYL 94
Query: 165 D-MPPYAVVDENVRLAKV-ALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARA 222
D +P +A+V++ V +AK + GA VN ILR+ S PLP +E R + +
Sbjct: 95 DKLPAHAIVNDAVGIAKNRGNKKGAEKFVNAILRQFT------SHPLPDMETIKR-RNKY 147
Query: 223 LATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLK 282
+ YS PVW+V++ G + A+ +M S +R+ + VT + LK
Sbjct: 148 YSVKYSLPVWLVKKLEDQFGSDRAVAIM------ESLFVRSKASIRVT--------DPLK 193
Query: 283 LQVPHELSLHLDEFIRVKTGLQ----NVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQS 338
L+ E +L + + TGL + + G +QDES+ LV ++
Sbjct: 194 LEEVAE-ALDAERSLLSATGLTKASGHFAASDYFTNGDITIQDESSQLVAPTLNIDGDDI 252
Query: 339 IVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT 398
I+D C+APGGKT ++AS L G V A+D+ +L ++ E A V I T D R
Sbjct: 253 ILDACSAPGGKTSHIASYLK-TGKVIALDLYDHKLELVKENANRLGVADNIETRKLDARE 311
Query: 399 ----FADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLL 454
F +S DK+L+DAPCSG+G++ ++ D+++N+ +D L+ +Q E+L +
Sbjct: 312 VHRHFEKDS---FDKILVDAPCSGIGLIRRKPDIKYNKESQDFNALQAIQLEILSSVCQT 368
Query: 455 VKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKH 514
++ GG++ YSTC+I EEN + +EAFL HP F + +D V K G+ P ++
Sbjct: 369 LRKGGIITYSTCTIFDEENRQVIEAFLQSHPNFEQVKLNH-TQADIV-KDGYLIITPEQY 426
Query: 515 SLDGAFAARLVR 526
DG F ++ R
Sbjct: 427 QTDGFFIGQVRR 438
>gi|154505951|ref|ZP_02042689.1| hypothetical protein RUMGNA_03493 [Ruminococcus gnavus ATCC 29149]
gi|336432654|ref|ZP_08612485.1| ribosomal RNA small subunit methyltransferase B [Lachnospiraceae
bacterium 2_1_58FAA]
gi|153793969|gb|EDN76389.1| ribosomal RNA small subunit methyltransferase B [Ruminococcus
gnavus ATCC 29149]
gi|336017936|gb|EGN47689.1| ribosomal RNA small subunit methyltransferase B [Lachnospiraceae
bacterium 2_1_58FAA]
Length = 448
Score = 174 bits (442), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 137/431 (31%), Positives = 213/431 (49%), Gaps = 37/431 (8%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L+ ++ +T + GT+ LD+++ + + M+P++ ILR Y++ +D
Sbjct: 39 LEKKERAFITRVTEGTLEHMIELDYILNQF--SKVKVNKMKPVIRNILRSAVYQLKYMDS 96
Query: 166 MPPYAVVDENVRLAKVALRPGAGNL---VNGILRKLVLLKDNNSLPLPKLEGNDRAQARA 222
+P AV +E V+LA ++ G G L VNG+LR + D P EG +R
Sbjct: 97 VPDSAVCNEAVKLA---VKKGFGTLRGFVNGVLRNVARGLDQVEYPT---EGIER----- 145
Query: 223 LATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLK 282
L+ +YS P W+++ W K + ++ + ++R N K T +L L
Sbjct: 146 LSVVYSMPEWILKLWKKTYDLDVIESMLQAFQEETPVTIRCNLAK-TTPENLKESLQKEG 204
Query: 283 LQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 342
+ V L +I+ L + ++G VQD S+ LV + DP+ G ++D
Sbjct: 205 VTVTPHPYLSYAFWIQDYDHLSELES---FQKGEFYVQDISSMLVGELADPKKGDRVIDV 261
Query: 343 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNET------AKLHQVNSVIRTIHADL 396
CAAPGGK L++A L G G V A D++ ++ ++ E +H V AD+
Sbjct: 262 CAAPGGKALHVAEKLRGTGSVEARDLSLYKVGLITENIERSGLTNIHAVQKDATVCDADV 321
Query: 397 RTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVK 456
+ AD V+ D PCSGLGVL+K+ DL++ + +EL LQ E+L A+ V+
Sbjct: 322 KDAAD-------LVIADLPCSGLGVLAKKTDLKYKATEQSTKELAGLQREILKNAASYVR 374
Query: 457 PGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDP-ADGLVPS--DFVTKHGFFFSDPIK 513
PGG L+YSTC+I+P EN E V FL PEF +DP AD L + + V + G P
Sbjct: 375 PGGTLIYSTCTINPAENIENVHWFLKEFPEFVLDPIADRLCSTLQNSVEEAGCLQLLPGI 434
Query: 514 HSLDGAFAARL 524
H DG F AR
Sbjct: 435 HKSDGFFIARF 445
>gi|373454494|ref|ZP_09546360.1| ribosomal RNA small subunit methyltransferase B [Dialister
succinatiphilus YIT 11850]
gi|371935769|gb|EHO63512.1| ribosomal RNA small subunit methyltransferase B [Dialister
succinatiphilus YIT 11850]
Length = 448
Score = 174 bits (442), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 140/457 (30%), Positives = 223/457 (48%), Gaps = 34/457 (7%)
Query: 76 AFADLLNKKGKGSGDNEMGYVERTLGFRTKD--LDDRDLRLVTDIVGGTIRWRRYLDHLI 133
A D+L KK Y TL K+ L+ + RL+T++V G +R YL +I
Sbjct: 19 ALYDILEKKA---------YANLTLQHVLKEYPLNGPESRLLTELVYGVLRKYNYLLWII 69
Query: 134 CLLCHDEKTFSSMEP-LLLQILRIGFYEIVKLDMPPYAVVDENVRLAKVALRPGAGNLVN 192
L + + P + + + + + +P A V+E V++AK G +N
Sbjct: 70 SRLS--TYSLKKIHPSVKILLCLGLYQLLYLSRIPASAAVNETVKIAKKITHKGNVGFIN 127
Query: 193 GILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVW 252
+LR + K +L P+ ND + ++ P W+V+ W + +E A L +
Sbjct: 128 AVLRGYIRKKKELAL-FPR---NDNPLLYD-SLYWNEPEWLVKWWQSHYSREAASILEAF 182
Query: 253 NNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLL 312
N + P ++R N+ K T D + ++ K + + I ++ G L
Sbjct: 183 NET-PKLAVRVNTLK--TNRDALQKMMAEKGIKTEAVPWDNNALILLE-GAHAFWP--LA 236
Query: 313 KEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGR 372
+EGL VQ S+ + A++ P+ G ++D CAAPG KT MA + G + A D+ +
Sbjct: 237 EEGLAYVQSLSSMIPAAILSPKEGDRVLDMCAAPGSKTTQMAEMMKNNGTIDAWDLYPHK 296
Query: 373 LRILNETAKLHQVNSVIRTIHADLRTFADNSTV---KCDKVLLDAPCSGLGVLSKRADLR 429
+ ++ AK I IHA R + DKVLLDAPCSGLGVLS + ++R
Sbjct: 297 ISLIKNNAK----KLGISIIHAGARDSGKPFPALFGRYDKVLLDAPCSGLGVLSHKPEIR 352
Query: 430 WNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSI 489
W+R+ ED++E LQ++LL A+ VK GG+LVYSTC+++P ENE+RV FL H EF+
Sbjct: 353 WHRKEEDLKEFPPLQEKLLSCAASYVKEGGLLVYSTCTLNPAENEDRVRQFLKEHQEFT- 411
Query: 490 DPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARLVR 526
P + + + G P + DG F A+L++
Sbjct: 412 -PLEFSLGDQKKSADGMMTILPYELQSDGFFIAKLLK 447
>gi|333395972|ref|ZP_08477789.1| 16S rRNA methyltransferase B [Lactobacillus coryniformis subsp.
coryniformis KCTC 3167]
gi|420145071|ref|ZP_14652547.1| Putative rRNA methytransferase (Sun protein) [Lactobacillus
coryniformis subsp. coryniformis CECT 5711]
gi|398403306|gb|EJN56561.1| Putative rRNA methytransferase (Sun protein) [Lactobacillus
coryniformis subsp. coryniformis CECT 5711]
Length = 450
Score = 174 bits (442), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 138/431 (32%), Positives = 216/431 (50%), Gaps = 49/431 (11%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
+ L D L+T++V G I+ + LD + K +E Q LR+ Y++V L
Sbjct: 38 EQLQPADASLLTNLVYGVIQRQLTLDFYLKPFI---KKPQRLERWARQNLRVAVYQMVYL 94
Query: 165 D-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARAL 223
D +P A+ E +AK G L+ ILR++ +P+L R L
Sbjct: 95 DKIPNRAIFYEATEIAKKMGNRGVAGLMTAILRQI------ERQGVPQLTTISEPLKR-L 147
Query: 224 ATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVM-QLNLLK 282
+ S P W+V + LG+++ ++ N + S+R N+ + D V +L L
Sbjct: 148 SISASVPEWLVAKLIDQLGEKKTEAILQTINQPAAASIRVNT--AIATVDEVQAELAELG 205
Query: 283 LQV-PHELSLHLDEFIRVKTGLQNVIQAGLLK------EGLCAVQDESAGLVVAVVDPQP 335
L+ P ELS GL V Q G L G VQDES+ LV A + +P
Sbjct: 206 LETTPSELS---------PVGL--VRQGGFLAGTTAFAYGQYTVQDESSMLVAASMQIEP 254
Query: 336 GQSIVDCCAAPGGKTLYMASCLSGQ--GLVYAIDINKGRLRILNETAKLHQVNSVIRTIH 393
++D CAAPGGKT ++AS LS + G V A D++ +++++ + AK V V+
Sbjct: 255 QHQVLDACAAPGGKTTHIASYLSAEAGGHVEAFDLHPHKVKLIKDNAKRLHVADVVNARA 314
Query: 394 ADLRTFADNSTVKC-DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAAS 452
D R D K D+VL+DAPCSGLG++ ++ ++++ R+ ED+ L+ +Q E+LD+ +
Sbjct: 315 FDARKLRDVVANKSFDRVLVDAPCSGLGLMRRKPEIKYTRQPEDLLNLQKIQLEILDSVA 374
Query: 453 LLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEF-------------SIDPADGLVPSD 499
+ VKPGG+L YSTC+I EEN++ ++ FL +H EF + P L P D
Sbjct: 375 IKVKPGGILTYSTCTIVNEENQDVIKQFLAKHAEFEPIPVHTDKALKVATTPYLRLYPDD 434
Query: 500 FVTKHGFFFSD 510
+ T GFF +
Sbjct: 435 YGTD-GFFICN 444
>gi|89074758|ref|ZP_01161216.1| Putative Sun protein [Photobacterium sp. SKA34]
gi|89049522|gb|EAR55083.1| Putative Sun protein [Photobacterium sp. SKA34]
Length = 426
Score = 174 bits (442), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 129/425 (30%), Positives = 211/425 (49%), Gaps = 31/425 (7%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
+D+ +RD L+ +I G +RW L+ + L +K + + ++ +G Y++ +
Sbjct: 30 QDIRERDHALLQEICYGVLRWLPRLESITQALM--DKPLKGKQRVFHHLILVGLYQLGYM 87
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P +A V E V K +P L+N ILR + +L + + A
Sbjct: 88 RIPAHAAVAETVNATKTLKKPQLRGLINAILRNYQ--RQQETLDAQAISHD--------A 137
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQ 284
Y HP W+++ K E+ + NN+ LR N + A + L
Sbjct: 138 GKYGHPSWLLKL-LKESYPEQFADICEANNTKAPMWLRVNRQHNTRDAYRAL---LDAED 193
Query: 285 VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 344
+ EL + +R+ + +V Q +G +VQD +A L V + P+ + I+DCCA
Sbjct: 194 IATELHPQAADALRLVSPC-DVTQLPGFSDGWVSVQDAAAQLAVDYLQPKADELILDCCA 252
Query: 345 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-- 402
APGGKT ++ + +V AID ++ RL+ ++E L ++N + AD R + +
Sbjct: 253 APGGKTAHIMEHVPSTKVV-AIDCDENRLKRVHEN--LARLNLDATVLCADAR-YPEQWW 308
Query: 403 STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLV 462
K D++LLDAPCS GV+ + D++W RR ED+ L LQ E+ DA L +KPGG LV
Sbjct: 309 QGDKFDRILLDAPCSATGVIRRHPDIKWLRRGEDIAALATLQAEIFDAMWLQLKPGGTLV 368
Query: 463 YSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAA 522
Y+TCSI P+EN ++V+AFL R P ++ +D P + P + S+DG + A
Sbjct: 369 YATCSITPQENCDQVKAFLARTPNVTLIGSDPAKPGRQIL--------PGEESMDGFYYA 420
Query: 523 RLVRA 527
L +A
Sbjct: 421 VLTKA 425
>gi|238788880|ref|ZP_04632670.1| Ribosomal RNA small subunit methyltransferase B [Yersinia
frederiksenii ATCC 33641]
gi|238722907|gb|EEQ14557.1| Ribosomal RNA small subunit methyltransferase B [Yersinia
frederiksenii ATCC 33641]
Length = 429
Score = 174 bits (441), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 137/421 (32%), Positives = 216/421 (51%), Gaps = 38/421 (9%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
K + D+D L+ ++ GT+R L+ I L + + + + ++ +G Y+++
Sbjct: 34 KSISDKDRALLQELCFGTLRVLPQLEWCIQQLM--ARPMTGKQRVFHYLIMVGLYQLIYT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+PP+A + E V A RP L+NG+LR+ + L + ND
Sbjct: 92 RIPPHAALAETVEGATALKRPQLKGLINGVLRQF---QRQQVELLERAANND-------- 140
Query: 225 TIYSHPVWMVRRWTK-YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRA---DLVMQLNL 280
+ Y HP W++ R + Y Q + I + NN P LR SR +R DL+ Q N+
Sbjct: 141 SRYLHPSWLLARIKQTYPAQWQQI--LDANNQKPPMWLRV-SRLHHSRNEYLDLLKQANI 197
Query: 281 LKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIV 340
L PH++ + +R+ T G + G VQD SA V ++DPQ G+ I+
Sbjct: 198 DAL--PHDV---YPDAVRLITPCAVSDLPGF-ELGWVTVQDASAQGCVDLLDPQNGEQIL 251
Query: 341 DCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 400
D CAAPGGKT ++ + + V A+DI++ RL + E + ++N+V+R D RT
Sbjct: 252 DLCAAPGGKTTHILEA-APKTHVLAVDIDEQRLNRVKENLQRLKLNAVVRV--GDGRT-P 307
Query: 401 DN--STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPG 458
D + D++LLDAPCS GV+ + D++W RR D+ EL LQ E+++A +K G
Sbjct: 308 DTWCGDQQFDRILLDAPCSATGVIRRHPDIKWLRRDSDIAELAKLQSEIIEAIWPKLKKG 367
Query: 459 GVLVYSTCSIDPEENEERVEAFLLRHPEFS-IDPADGLVPSDFVTKH-----GFFFSDPI 512
GV+VY+TCSI PEEN++++ AFL RH E ++ P H GFF++ I
Sbjct: 368 GVMVYATCSILPEENQQQITAFLQRHDEAELVETGTASAPGRQNLPHPEDGDGFFYAKLI 427
Query: 513 K 513
K
Sbjct: 428 K 428
>gi|427392427|ref|ZP_18886432.1| ribosomal RNA small subunit methyltransferase B [Alloiococcus
otitis ATCC 51267]
gi|425731388|gb|EKU94206.1| ribosomal RNA small subunit methyltransferase B [Alloiococcus
otitis ATCC 51267]
Length = 463
Score = 174 bits (441), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 144/451 (31%), Positives = 224/451 (49%), Gaps = 38/451 (8%)
Query: 90 DNEMGYVERTLGFRTKDLD--DRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSME 147
D E GY + R ++ D L+T +V G ++ + LD + K ++
Sbjct: 22 DQEAGYANLEVNARLDKMNASQEDKNLMTALVYGVLQHQYLLDFYLEPYIKKPK---KLQ 78
Query: 148 PLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNS 206
+ Q+LR+ Y++V LD +P YA ++E V+ AK G LVNG+LR L+ +
Sbjct: 79 AWVRQVLRLAVYQLVFLDHIPDYAAINEAVQYAKKRGHKGVSGLVNGVLRNF--LRHDLR 136
Query: 207 LPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSR 266
P + DR + YS P W+V + GQ+ AI + N SLR N
Sbjct: 137 NPKDLADPVDR-----IRVSYSLPKWLVDKLITQYGQKTAIDMAASYNKPAKLSLRVNLD 191
Query: 267 KGVTRADLVMQLNLLKLQVPHELSLHLDEFIRVKTGL---QNVIQAGLLKEGLCAVQDES 323
K V+R + QL QV + L I V GL + QAG ++ +QDES
Sbjct: 192 K-VSREEACTQLEASGYQV-QKSDLAPCGLI-VAGGLPTSHPLYQAGAIR-----IQDES 243
Query: 324 AGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQ--GLVYAIDINKGRLRILNETAK 381
A LV +D + + D CA PGGK+ ++AS L + G +YA DI +L ++ ++ +
Sbjct: 244 AMLVGLALDLKSHYKVADLCAGPGGKSGHIASYLKAEAGGQLYASDIYDHKLDLIEDSLE 303
Query: 382 LHQVNSVIRTIHADLR----TFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDM 437
S+ + D R + DN D++L+DAPCSG+G+L ++ D+R+++ + +
Sbjct: 304 SQGYASLAQVKKLDGRIAGQVYPDNY---FDRILIDAPCSGMGLLRRKPDMRYSKDVASL 360
Query: 438 EELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSID--PADGL 495
L LQ +L+AA L+K GG LVY+TC+I EEN+ +AFL +PEF ++ P D
Sbjct: 361 TALPELQLAILNAAGPLLKEGGKLVYATCTILQEENQAVTQAFLKENPEFFLEKIPFD-- 418
Query: 496 VPSDFVTKHGFFFSDPIKHSLDGAFAARLVR 526
S ++ G P DG + ARLV+
Sbjct: 419 -QSQYLDNEGQVTILPSDFDSDGFYLARLVK 448
>gi|332159509|ref|YP_004424788.1| fmu protein [Pyrococcus sp. NA2]
gi|331034972|gb|AEC52784.1| fmu protein [Pyrococcus sp. NA2]
Length = 451
Score = 174 bits (441), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 107/299 (35%), Positives = 159/299 (53%), Gaps = 8/299 (2%)
Query: 227 YSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVP 286
Y P W ++R K LG+E N S+R N+ K + +
Sbjct: 157 YLAPAWFIQRVKKILGEETEQFFKAVNEKHEWISIRVNTLKADVEEIIEELEEEGVEVIR 216
Query: 287 HELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAP 346
E + +++K G N + K+G VQ+E++ + V++PQPG+ +VD AAP
Sbjct: 217 SE---RVPTILKIK-GPYNFDSSKAFKKGKIIVQEEASAVASIVLNPQPGEIVVDLAAAP 272
Query: 347 GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVK 406
GGKT +MA + +G +YA DI+K R++ L E + + +++ I D R + +
Sbjct: 273 GGKTTHMAELMKNKGKIYAFDIDKMRMKRLKEFVQRMGIK-IVKPIIKDARKAPEIIGEE 331
Query: 407 -CDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465
DKVLLDAPC+ G + K +LRW R E ++E+ LQ ELL++A+ LVKPGG L+Y+T
Sbjct: 332 VADKVLLDAPCTSSGTIGKNPELRWRLREEKIKEMAELQRELLESAAKLVKPGGRLLYTT 391
Query: 466 CSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARL 524
CSI EENEE ++ FL HPEF + P + P D G + P +HS G F A L
Sbjct: 392 CSIFKEENEENIKWFLANHPEFKLVPLNS--PYDPGFLEGTMRAWPHRHSTIGFFYALL 448
>gi|238783195|ref|ZP_04627221.1| Ribosomal RNA small subunit methyltransferase B [Yersinia
bercovieri ATCC 43970]
gi|238715991|gb|EEQ07977.1| Ribosomal RNA small subunit methyltransferase B [Yersinia
bercovieri ATCC 43970]
Length = 431
Score = 174 bits (441), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 133/418 (31%), Positives = 213/418 (50%), Gaps = 36/418 (8%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDM 166
+ D+D L+ ++ GT+R L+ I L + + + + ++ +G Y+++ +
Sbjct: 36 ISDKDRALLQELCFGTLRVLPQLEWCIQQLM--ARPMTGKQRVFHYLIMVGLYQLIYTRI 93
Query: 167 PPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATI 226
PP+A + E V A RP L+NG+LR+ + L + ND +
Sbjct: 94 PPHAALAETVEGATALKRPQLKGLINGVLRQF---QRQQVELLERAANND--------SR 142
Query: 227 YSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQ-- 284
Y HP W++ R K ++ +++ NN P LR N R +R++ L LLK
Sbjct: 143 YLHPSWLLAR-IKLAYPDQWQQILDANNQKPPMWLRVN-RLHHSRSEY---LELLKQADI 197
Query: 285 --VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 342
PH+ + +R+ T G + G VQD SA V ++DPQ G+ I+D
Sbjct: 198 DAAPHDA---YPDALRLITPCAVSALPGF-ELGWVTVQDASAQGCVELLDPQNGEQILDL 253
Query: 343 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT-FAD 401
CAAPGGKT ++ + + V A+DI++ RL + E + Q+++V+R D RT A
Sbjct: 254 CAAPGGKTTHILEA-APKAHVLAVDIDEQRLSRVKENLQRLQLHAVVRV--GDGRTPEAW 310
Query: 402 NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVL 461
+ D++LLDAPCS GV+ + D++W RR D+ EL LQ E+++A +K GGV+
Sbjct: 311 CGDQQFDRILLDAPCSATGVIRRHPDIKWLRRDSDIAELAQLQSEIIEAIWPKLKKGGVM 370
Query: 462 VYSTCSIDPEENEERVEAFLLRHPEFS-IDPADGLVPSDFVTKH-----GFFFSDPIK 513
VY+TCSI PEEN++++ AFL RH E ++ P H GFF++ IK
Sbjct: 371 VYATCSILPEENQQQIAAFLQRHSEAELVETGTTAAPGKQNLPHPEDGDGFFYAKLIK 428
>gi|251783087|ref|YP_002997390.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus dysgalactiae
subsp. equisimilis GGS_124]
gi|408402181|ref|YP_006860145.1| 16S rRNA m(5)C 967 methyl transferase [Streptococcus dysgalactiae
subsp. equisimilis RE378]
gi|242391717|dbj|BAH82176.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus dysgalactiae
subsp. equisimilis GGS_124]
gi|407968410|dbj|BAM61648.1| 16S rRNA m(5)C 967 methyl transferase [Streptococcus dysgalactiae
subsp. equisimilis RE378]
Length = 452
Score = 174 bits (441), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 131/434 (30%), Positives = 219/434 (50%), Gaps = 41/434 (9%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
K L +D L+T+IV GT+ + L+ L H K ++ + +L + Y+++ L
Sbjct: 50 KALSTKDRALLTEIVYGTVSRKISLE---WYLAHYVKDRDKLDKWVYYLLMLSLYQLIYL 106
Query: 165 D-MPPYAVVDENVRLAKV-ALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARA 222
D +P +A+V++ V +AK + GA VN ILR+ S PLP + G + + +
Sbjct: 107 DKLPAHAIVNDAVGIAKNRGNKKGAEKFVNAILRQFT------SHPLPDM-GTIKRRNKY 159
Query: 223 LATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLK 282
+ YS PVW+V++ G + ++ +M S +R+ + VT + LK
Sbjct: 160 YSVKYSLPVWLVKKLEDQFGSDRSVAIM------ESLFVRSKASIRVT--------DPLK 205
Query: 283 LQVPHELSLHLDEFIRVKTGLQ----NVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQS 338
L+ E L + + TGL + + G +QDES+ LV ++ +
Sbjct: 206 LEKIAE-DLDAERSLLSATGLTKASGHFAASDYFTNGDITIQDESSQLVAPTLNIDGDEI 264
Query: 339 IVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT 398
I+D C+APGGKT ++AS L G V A+D+ +L ++ E A V I T D R
Sbjct: 265 ILDACSAPGGKTSHIASYLK-TGKVIALDLYDHKLELVKENANRLGVADNIETRKLDARE 323
Query: 399 ----FADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLL 454
F +S DK+L+DAPCSG+G++ ++ D+++N+ +D L+ +Q E+L +
Sbjct: 324 VHRHFEKDS---FDKILVDAPCSGIGLIRRKPDIKYNKESQDFNALQAIQLEILSSVCQT 380
Query: 455 VKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKH 514
++ GG++ YSTC+I EEN + +EAFL HP F + +D V K G+ P ++
Sbjct: 381 LRKGGIITYSTCTIFDEENRQVIEAFLQSHPNFEQVKLNH-TQADIV-KDGYLIITPEQY 438
Query: 515 SLDGAFAARLVRAF 528
DG F ++ R
Sbjct: 439 QTDGFFIGQVRRVL 452
>gi|238792967|ref|ZP_04636597.1| Ribosomal RNA small subunit methyltransferase B [Yersinia
intermedia ATCC 29909]
gi|238727821|gb|EEQ19345.1| Ribosomal RNA small subunit methyltransferase B [Yersinia
intermedia ATCC 29909]
Length = 429
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 132/417 (31%), Positives = 214/417 (51%), Gaps = 30/417 (7%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
K++ D+D L+ ++ GT+R L+ I L + + + + ++ IG Y++V
Sbjct: 34 KNISDKDRALLQELCFGTLRVLPQLEWCIQQLM--ARPMTGKQRIFHYLIMIGLYQLVYT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+PP+A + E V A RP L+NG+LR+ + L + ND
Sbjct: 92 RIPPHAALAETVEGATALKRPQLKGLINGVLRQF---QRQQVELLERAANND-------- 140
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLK-L 283
+ Y HP W++ R K ++ +++ NN P LR SR TR + L+LLK
Sbjct: 141 SRYLHPSWLLAR-IKQAYPDQWQQIVDANNQKPPMWLRV-SRLHHTRGEY---LDLLKEA 195
Query: 284 QVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCC 343
+ E + + +R+ T G + G VQD SA V ++DPQ G+ I+D C
Sbjct: 196 GIDAEPHAYYPDAVRLITPCAVSDLPGF-ELGWVTVQDASAQGCVDLLDPQNGEQILDLC 254
Query: 344 AAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-N 402
AAPGGKT ++ + + V A+DI++ RL +NE + ++++V+R D RT
Sbjct: 255 AAPGGKTTHILEA-APKAHVLAVDIDEQRLSRVNENLQRLKLHAVVRV--GDGRTPETWC 311
Query: 403 STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLV 462
+ D++LLDAPCS GV+ + D++W RR D+ +L LQ E+++A +K GGV+V
Sbjct: 312 GDQQFDRILLDAPCSATGVIRRHPDIKWLRRDSDIADLAALQSEIIEAIWPRLKKGGVMV 371
Query: 463 YSTCSIDPEENEERVEAFLLRHPEFS-IDPADGLVPSDFVTKH-----GFFFSDPIK 513
Y+TCSI PEEN++++ AFL RH + ++ P H GFF++ K
Sbjct: 372 YATCSILPEENQQQIAAFLQRHSDAELVETGTNTAPGKQNLPHPEDGDGFFYAKLFK 428
>gi|422698512|ref|ZP_16756404.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX1346]
gi|315172961|gb|EFU16978.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX1346]
Length = 459
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 133/432 (30%), Positives = 226/432 (52%), Gaps = 37/432 (8%)
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVG 120
R V+ + R+ GGA+++LL NEM +L ++D RL T++V
Sbjct: 14 RYVALETIERVDKGGAYSNLLL--------NEM--------MTKSELSEKDGRLFTELVY 57
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLA 179
GTI + L++ + K ++ + +L + Y+++ LD +P +AV++E V +
Sbjct: 58 GTISRKLLLEYYLTPFV---KKPQRVDNWVKNLLILSLYQLLYLDKVPDHAVINEAVEIG 114
Query: 180 KVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGN-DRAQARALATIYSHPVWMVRRWT 238
K G G VNG+LR + N + L + DR LAT S P W+ +
Sbjct: 115 KRRGNTGIGKFVNGVLRAF---QRNGAPSLAAISDPVDR-----LATEISMPRWLTEKLL 166
Query: 239 KYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFIR 298
LG+EE +L + S R N+R ++R + + +L + E L +
Sbjct: 167 AQLGEEETRQLGLSLFEKSHASGRVNTR-FISREEALEELQETGI-AAKESQLSPYGVVA 224
Query: 299 VKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLS 358
K L + L G +QDES+ LV + +P ++D CAAPGGKT ++A+ L
Sbjct: 225 EKGYLAG---SELFINGCLTIQDESSMLVAPAMQIEPHHRVLDACAAPGGKTTHIATFLE 281
Query: 359 GQ--GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKC-DKVLLDAP 415
+ G V ++DI+ +++++NE A+ V V++ D R A+ + D++L+DAP
Sbjct: 282 AEAGGRVTSLDIHAHKIKLINENAQRLHVADVVQAEKLDARQVAEEFPAETFDRILVDAP 341
Query: 416 CSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEE 475
CSGLG++ ++ D+++++ D + L +Q E+L++ + +K G++VYSTC+I PEEN+E
Sbjct: 342 CSGLGLMRRKPDIKYHKTANDFQNLPKIQLEILESVAPTLKQWGIMVYSTCTITPEENQE 401
Query: 476 RVEAFLLRHPEF 487
V AFL +HPEF
Sbjct: 402 VVAAFLAKHPEF 413
>gi|228987008|ref|ZP_04147134.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
gi|229157441|ref|ZP_04285519.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus cereus ATCC
4342]
gi|228626168|gb|EEK82917.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus cereus ATCC
4342]
gi|228772786|gb|EEM21226.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
Length = 360
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 113/328 (34%), Positives = 180/328 (54%), Gaps = 18/328 (5%)
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKL-EGNDRAQARALA 224
+P A + E V +AK G +VNG+LR + +P + E D + A+A
Sbjct: 7 VPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSI------QREGVPSVDEIKDPVERLAIA 60
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQ 284
T SHP+W+V+ WT G E A K+ N P + R N K +T + + L ++
Sbjct: 61 T--SHPIWLVQEWTSEYGLETAEKMCEVNMLPPVPTARVNVDK-ITVEEAIALLASEGIE 117
Query: 285 VPH-ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCC 343
+LS D+ I+++ G NV K+G ++QDES+ LV ++P G ++D C
Sbjct: 118 AKRGDLS---DDAIQIEKG--NVAHTDAFKKGFLSIQDESSMLVARALEPDEGDVVLDSC 172
Query: 344 AAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN- 402
AAPGGKT ++A L G G V ++D++ ++R++ + A+ + +V T D R ++
Sbjct: 173 AAPGGKTTHIAERLKGTGQVMSLDLHAHKVRLIKQQAERLGLENV-ETKALDARKVQEHF 231
Query: 403 STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLV 462
+ DK+L+DAPCSG GV+ ++ D++ + D E L +Q +L+ + L+K GG LV
Sbjct: 232 ANETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSERLSTIQLAILEKIAPLLKQGGRLV 291
Query: 463 YSTCSIDPEENEERVEAFLLRHPEFSID 490
YSTC+I+ ENE+ +E FL HPEF D
Sbjct: 292 YSTCTIEKIENEQVIERFLQEHPEFEWD 319
>gi|229197976|ref|ZP_04324690.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus cereus m1293]
gi|228585455|gb|EEK43559.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus cereus m1293]
Length = 360
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 113/327 (34%), Positives = 179/327 (54%), Gaps = 16/327 (4%)
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A + E V +AK G +VNG+LR + +P E D + A+AT
Sbjct: 7 VPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSI----QREGVPSVD-EIKDPVERLAIAT 61
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
SHP+W+V+ WT G E A K+ N P + R N K +T + + L ++
Sbjct: 62 --SHPIWLVQEWTSEYGLETAEKMCEVNMLPPVPTARVNVDK-ITVEEAIALLASEGIEA 118
Query: 286 PH-ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 344
+LS D+ I+++ G NV K+G ++QDES+ LV ++P G ++D CA
Sbjct: 119 KRGDLS---DDAIQIEKG--NVAHTDAFKKGFLSIQDESSMLVARALEPDEGDVVLDSCA 173
Query: 345 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-S 403
APGGKT ++A L G G V ++D++ ++R++ + A+ + +V T D R ++ +
Sbjct: 174 APGGKTTHIAERLKGTGQVMSLDLHAHKVRLIKQQAERLGLGNV-ETKALDARKVQEHFA 232
Query: 404 TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463
DK+L+DAPCSG GV+ ++ D++ + D E L +Q +L+ + L+K GG LVY
Sbjct: 233 NETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSERLSTIQLAILEKIAPLLKQGGRLVY 292
Query: 464 STCSIDPEENEERVEAFLLRHPEFSID 490
STC+I+ ENE+ +E FL HPEF D
Sbjct: 293 STCTIEKIENEQVIERFLQEHPEFEWD 319
>gi|372275657|ref|ZP_09511693.1| 16S rRNA methyltransferase B [Pantoea sp. SL1_M5]
Length = 433
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 134/424 (31%), Positives = 212/424 (50%), Gaps = 40/424 (9%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
K L D+D LV +I G +R L+ LI L E+ + + +L ++ +G Y++
Sbjct: 34 KKLSDKDSALVQEICFGVLRTLPQLEALIGKLM--ERPLTGKQRVLHYLIMVGLYQLEYT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P +A + E V A+V R L+NG+LR+ R + LA
Sbjct: 92 RVPAHAALAETVAGAEVLKRTSMKGLLNGVLRQF-----------------QRQREELLA 134
Query: 225 TI------YSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQL 278
T+ Y HP W+++R ++ E+ +++ NN P LR N + L M
Sbjct: 135 TVQDGPQRYLHPGWLLKR-LQHAWPEQWQQIVEANNLRPPMWLRVNRQHHDRDTWLAMLA 193
Query: 279 NLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQS 338
+ P ++ + + +R+ V Q +G VQD SA +++PQ G+
Sbjct: 194 ESGRNAQP---AVDVPDALRLDAPA-PVSQLPGFDQGWVTVQDLSAQRCALLLEPQNGEQ 249
Query: 339 IVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT 398
I+D CAAPGGKT ++ ++ Q V A+D++ RL+ +NE L ++ D RT
Sbjct: 250 ILDLCAAPGGKTTHILE-IAPQAEVIAVDVDAQRLKRVNEN--LQRLGMKADVKQGDGRT 306
Query: 399 FAD-NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKP 457
+ D++LLDAPCS GV+ + D++W RR D+ EL LQ E+LDA +KP
Sbjct: 307 PQQWCGDRQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAKLQGEILDAIWPHLKP 366
Query: 458 GGVLVYSTCSIDPEENEERVEAFLLRHPEFSID-----PADGL-VPSDFVTKHGFFFSDP 511
GG L+Y+TCSI PEEN ++++AFL R + + PA+GL V + GFF++
Sbjct: 367 GGTLIYATCSILPEENHQQIDAFLQRQHDAQAEPLGDAPANGLQVFPEAEGGDGFFYAKL 426
Query: 512 IKHS 515
IK S
Sbjct: 427 IKKS 430
>gi|94988962|ref|YP_597063.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus pyogenes
MGAS9429]
gi|94992855|ref|YP_600954.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus pyogenes
MGAS2096]
gi|94542470|gb|ABF32519.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus pyogenes
MGAS9429]
gi|94546363|gb|ABF36410.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus pyogenes
MGAS2096]
Length = 440
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 133/432 (30%), Positives = 217/432 (50%), Gaps = 41/432 (9%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
K L +D L+T+IV GT+ + L+ L H K ++ + +L + Y++ L
Sbjct: 38 KALSAKDRALLTEIVYGTVSRKISLE---WYLAHYVKDRDKLDKWVYYLLMLSLYQLTYL 94
Query: 165 D-MPPYAVVDENVRLAKV-ALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARA 222
D +P +A+V++ V +AK + GA VN ILR+ S PLP +E R + +
Sbjct: 95 DKLPAHAIVNDAVGIAKNRGNKKGAEKFVNAILRQFT------SHPLPDMETIKR-RNKY 147
Query: 223 LATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLK 282
+ YS PVW+V++ G A+ +M S +R+ + VT + LK
Sbjct: 148 YSVKYSLPVWLVKKLEDQFGSHRAVAIM------ESLFVRSKASIRVT--------DPLK 193
Query: 283 LQVPHELSLHLDEFIRVKTGLQ----NVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQS 338
L+ E +L + + TGL + + G +QDES+ LV ++
Sbjct: 194 LEEVAE-ALDAERSLLSATGLTKASGHFAASDYFTNGDITIQDESSQLVAPTLNIDGDDI 252
Query: 339 IVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT 398
I+D C+APGGKT ++AS L G V A+D+ +L ++ E A V I T D R
Sbjct: 253 ILDACSAPGGKTSHIASYLK-TGKVIALDLYDHKLELVKENANRLGVADNIETRKLDARE 311
Query: 399 ----FADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLL 454
F +S DK+L+DAPCSG+G++ ++ D+++N+ +D L+ +Q E+L +
Sbjct: 312 VHRHFEKDS---FDKILVDAPCSGIGLIRRKPDIKYNKESQDFNALQAIQLEILSSVCQT 368
Query: 455 VKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKH 514
++ GG++ YSTC+I EEN + +EAFL HP F + +D V K G+ P ++
Sbjct: 369 LRKGGIITYSTCTIFDEENRQVIEAFLQSHPNFEQVKLNH-TQADIV-KDGYLIITPEQY 426
Query: 515 SLDGAFAARLVR 526
DG F ++ R
Sbjct: 427 QTDGFFIGQVRR 438
>gi|358052141|ref|ZP_09146067.1| sun protein [Staphylococcus simiae CCM 7213]
gi|357258369|gb|EHJ08500.1| sun protein [Staphylococcus simiae CCM 7213]
Length = 435
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 127/431 (29%), Positives = 214/431 (49%), Gaps = 39/431 (9%)
Query: 104 TKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVK 163
T DL+ D L T+IV GT++ + LD+ + + ++ + Q+L + Y+ V
Sbjct: 33 TNDLNAMDKGLFTEIVYGTVKRKYTLDYFLKPFVQ-----TKIKAWVRQLLWMSIYQYVY 87
Query: 164 LD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARA 222
LD +P +A+++E V +AK GN+VNGILR ++ LP E + R
Sbjct: 88 LDKVPDHAIINEAVEIAKERGGYHNGNVVNGILRTMM------RSDLPHFEEIADPKKR- 140
Query: 223 LATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRA---DLVMQLN 279
+A YS P W++ W + G EE ++ ++RAN +TRA D++ +L
Sbjct: 141 MAIEYSMPKWIIDHWVTHYGIEETKAILQSFMEQNDTTVRAN----ITRASIDDIISKLQ 196
Query: 280 LLKLQVPHE----LSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQP 335
+V + LH+ G Q +I + K+G ++QD+S+ V ++ +
Sbjct: 197 DEGYEVEQDQDLPYCLHI-------LG-QPIINSRSFKDGFVSIQDKSSMFVGHIIGLER 248
Query: 336 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHAD 395
I+D C+APGGK ++A L +G V A DI++ ++ ++N K ++N++ H
Sbjct: 249 HDHILDACSAPGGKACHIAELLMPEGHVDATDIHEHKIDLINYNIKKLRLNNIKAFQHDA 308
Query: 396 LRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLV 455
+ + DKVL+DAPCSGLGVL + ++++ + E + L LQ E+L+ V
Sbjct: 309 TKPYQQT----YDKVLVDAPCSGLGVLRHKPEIKYTQSKEQIASLVDLQLEILENVKNNV 364
Query: 456 KPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHS 515
K GG L+YSTC+I+ EN+ + FL + F +P V + V P +
Sbjct: 365 KIGGTLIYSTCTIEQLENDNVIYTFLKNNKNFEFEPFQHPVTGEMVKTMQIM---PQDFN 421
Query: 516 LDGAFAARLVR 526
DG F ++ R
Sbjct: 422 SDGFFITKITR 432
>gi|417003276|ref|ZP_11942347.1| putative ribosomal RNA small subunit methyltransferase B
[Anaerococcus prevotii ACS-065-V-Col13]
gi|325478752|gb|EGC81863.1| putative ribosomal RNA small subunit methyltransferase B
[Anaerococcus prevotii ACS-065-V-Col13]
Length = 426
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 125/416 (30%), Positives = 202/416 (48%), Gaps = 45/416 (10%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPPYA 170
+L +T ++ G + + YLD++I L + + +L IL IG Y I L+ YA
Sbjct: 34 NLSYITKVIYGVLENKIYLDYMIDKLS--KVKLRKIHKNVLLILEIGIYNIHFLETKDYA 91
Query: 171 VVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHP 230
VD+ V L K + AG VN ILR + N + K++ +D ++L+ YS P
Sbjct: 92 TVDKLVDLTKKKNKRSAG-FVNAILRNFI----RNEKEISKIKISD--DLKSLSVRYSMP 144
Query: 231 VWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRK-------------GVTRADLVMQ 277
+ + G + + + + N + S+R N+ K G T D +
Sbjct: 145 YDITKYIFDNYGMDYTKEFLRYANKESKLSIRVNTTKINVKSLKKDLESIGYTVKDSNIS 204
Query: 278 LNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQ 337
N L + P+ L + L K GL +Q E++ V V++P+
Sbjct: 205 KNALIVDNPNGL-----------------VSTDLFKNGLFTIQQEASMKTVEVLNPRHNS 247
Query: 338 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR 397
+I+D CAAPG KT Y+A G + A DI+ +L ++ E + ++ T + D R
Sbjct: 248 NILDICAAPGTKTTYIAEYTENTGKILANDISFNKLDLIMENINRLGLRNIELT-NFDAR 306
Query: 398 TFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKP 457
+ D K D +L+DAPCSGLGV++++ ++R+NR LED+++L LQ E++ A +K
Sbjct: 307 VYKDEYKEKFDYILVDAPCSGLGVMARKPEIRYNRSLEDIKKLAKLQREIIINAIKYLKV 366
Query: 458 GGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVT----KHGFFFS 509
GGVL+YSTC+I EN E + ++ + P DG +FV+ GFF S
Sbjct: 367 GGVLIYSTCTIGNIENRENFD-YIKNMETMEVIPIDGKDYIEFVSFKENTDGFFIS 421
>gi|386317550|ref|YP_006013714.1| Putative RNA-binding Sun protein [Streptococcus dysgalactiae subsp.
equisimilis ATCC 12394]
gi|417752543|ref|ZP_12400738.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
dysgalactiae subsp. equisimilis SK1249]
gi|417927671|ref|ZP_12571059.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
dysgalactiae subsp. equisimilis SK1250]
gi|323127837|gb|ADX25134.1| Putative RNA-binding Sun protein [Streptococcus dysgalactiae subsp.
equisimilis ATCC 12394]
gi|333771687|gb|EGL48604.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
dysgalactiae subsp. equisimilis SK1249]
gi|340765545|gb|EGR88071.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
dysgalactiae subsp. equisimilis SK1250]
Length = 440
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 131/432 (30%), Positives = 219/432 (50%), Gaps = 41/432 (9%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
K L +D L+T+IV GT+ + L+ L H K ++ + +L + Y+++ L
Sbjct: 38 KALSTKDRALLTEIVYGTVSRKISLE---WYLAHYVKDRDKLDKWVYYLLMLSLYQLIYL 94
Query: 165 D-MPPYAVVDENVRLAKV-ALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARA 222
D +P +A+V++ V +AK + GA VN ILR+ S PLP + G + + +
Sbjct: 95 DKLPAHAIVNDAVGIAKNRGNKKGAEKFVNAILRQFT------SHPLPDM-GTIKRRNKY 147
Query: 223 LATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLK 282
+ YS PVW+V++ G + ++ +M S +R+ + VT + LK
Sbjct: 148 YSVKYSLPVWLVKKLEDQFGSDRSVAIM------ESLFVRSKASIRVT--------DPLK 193
Query: 283 LQVPHELSLHLDEFIRVKTGLQ----NVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQS 338
L+ E L + + TGL + + G +QDES+ LV ++ +
Sbjct: 194 LEKIAE-DLDAERSLLSATGLTKASGHFAASDYFTNGDITIQDESSQLVAPTLNIDGDEI 252
Query: 339 IVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT 398
I+D C+APGGKT ++AS L G V A+D+ +L ++ E A V I T D R
Sbjct: 253 ILDACSAPGGKTSHIASYLK-TGKVIALDLYDHKLELVKENANRLGVADNIETRKLDARE 311
Query: 399 ----FADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLL 454
F +S DK+L+DAPCSG+G++ ++ D+++N+ +D L+ +Q E+L +
Sbjct: 312 VHRHFEKDS---FDKILVDAPCSGIGLIRRKPDIKYNKESQDFNALQAIQLEILSSVCQT 368
Query: 455 VKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKH 514
++ GG++ YSTC+I EEN + +EAFL HP F + +D V K G+ P ++
Sbjct: 369 LRKGGIITYSTCTIFDEENRQVIEAFLQSHPNFEQVKLNH-TQADIV-KDGYLIITPEQY 426
Query: 515 SLDGAFAARLVR 526
DG F ++ R
Sbjct: 427 QTDGFFIGQVRR 438
>gi|402839079|ref|ZP_10887572.1| ribosomal RNA small subunit methyltransferase B [Eubacteriaceae
bacterium OBRC8]
gi|402270618|gb|EJU19876.1| ribosomal RNA small subunit methyltransferase B [Eubacteriaceae
bacterium OBRC8]
Length = 436
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 120/407 (29%), Positives = 213/407 (52%), Gaps = 24/407 (5%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
F+ DLD +T IV G + YLD+ I + + FS + IL + F+EI
Sbjct: 30 FKNVDLDYEMRGFITYIVYGVLSNINYLDYFIKK--YSDIAFSKISKKAKLILEMAFFEI 87
Query: 162 VKLDMP-PYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPK-LEGND-RA 218
+ ++ YA V+ENV+L K A + VN +LRK D N++ K E +D +
Sbjct: 88 IFMNSSVNYASVNENVKLVK-KYDNRAKSFVNAVLRKFT--SDENNIKNAKNYEFSDIKE 144
Query: 219 QARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQL 278
+ ++T YS ++ +R + +L++ + P+ +R N K T D ++
Sbjct: 145 DIKYISTRYSVSDYIAQRLLDNYKNKFTEELLMSMSDTPNIFIRGNRLK--TDID-DLKR 201
Query: 279 NLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQS 338
+L KL E+ + + +K +++ + + + G +VQD ++ V + P+P ++
Sbjct: 202 SLQKLGNKFEIIDEENMIVSLK-NFKDISKNDMYRNGFFSVQDYASMKAVLALSPEPFEN 260
Query: 339 IVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT 398
++D CAAPGGK+++MA + +G + ++DI+ +L++L E AK +N +I+T D
Sbjct: 261 VLDICAAPGGKSVFMAELMGNKGSITSLDISSKKLKLLEEQAKRLGIN-IIKTYVNDATI 319
Query: 399 FADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPG 458
+ K DKVL D PCSG+G+L ++ ++R+ ++ ED++ + +Q + L SL +K
Sbjct: 320 YKSEYKNKFDKVLCDVPCSGIGILRRKPEIRY-KKFEDIQNIIDVQKQTLKNTSLYLKKD 378
Query: 459 GVLVYSTCSIDPEENEERVEAFLLRHPEFS----------IDPADGL 495
G+LVYSTC++ EEN + + FL ++ F ID DG
Sbjct: 379 GILVYSTCTLGKEENSDIISEFLSKNINFELIFQKEYYPHIDSTDGF 425
>gi|283835706|ref|ZP_06355447.1| hypothetical protein CIT292_10098 [Citrobacter youngae ATCC 29220]
gi|291068385|gb|EFE06494.1| ribosomal RNA small subunit methyltransferase B [Citrobacter
youngae ATCC 29220]
Length = 429
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 131/420 (31%), Positives = 206/420 (49%), Gaps = 44/420 (10%)
Query: 109 DRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPP 168
D+D L+ ++ G +R L+ +I L E+ + + + ++ +GFY+++ +PP
Sbjct: 38 DKDKALLQELCFGALRTLSQLEWMIQQLM--ERPMTGKQRTVHYLIMVGFYQLLHTRIPP 95
Query: 169 YAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATI-- 226
+A + E V A V RP L+NG+LR+ R Q L
Sbjct: 96 HAALAETVEGAVVIKRPQLKGLINGVLRQF-----------------QRRQEELLTEFAQ 138
Query: 227 ----YSHPVWMVRRW-TKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLL 281
+ HP W+V+R Y Q EAI + NN P LR N A L +
Sbjct: 139 SDLRFLHPSWLVKRIKAAYPQQWEAI--LEANNQRPPMWLRVNRNHHTRDAWLELLAEAG 196
Query: 282 KLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVD 341
PH + +R++T + G ++G VQD SA V+ + PQ G+ I+D
Sbjct: 197 LTGFPHP---DYPDAVRLETPAPVLALPGF-EQGWVTVQDASAQGCVSYLQPQNGEQILD 252
Query: 342 CCAAPGGKTLYMASCLSGQGLVYAIDINKGRL-RILNETAKLHQVNSVIRTIHADLRTFA 400
CAAPGGKT ++ ++ Q V A+D+++ RL R+ + +L +V + + +
Sbjct: 253 LCAAPGGKTTHILE-VAPQANVMAVDVDEKRLSRVYDNLKRLGMKATVKQGDGRYPQQWC 311
Query: 401 DNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGV 460
+ D++LLDAPCS GV+ + D++W RR D+ EL LQ E+L+A +KPGG
Sbjct: 312 GEQ--QFDRILLDAPCSASGVIRRHPDIKWLRRDRDIAELAQLQAEILNATWTHLKPGGT 369
Query: 461 LVYSTCSIDPEENEERVEAFLLRHPEFSI-------DPADGLVPSDFVTKHGFFFSDPIK 513
LVY+TCSI PEEN++++ AFL R P+ + P +P D GFF++ IK
Sbjct: 370 LVYATCSILPEENQQQIAAFLARTPDAVLSETGTPEQPGRQNLP-DAEDGDGFFYAKLIK 428
>gi|184155726|ref|YP_001844066.1| rRNA methylase [Lactobacillus fermentum IFO 3956]
gi|183227070|dbj|BAG27586.1| rRNA methylase [Lactobacillus fermentum IFO 3956]
Length = 448
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 140/477 (29%), Positives = 237/477 (49%), Gaps = 62/477 (12%)
Query: 56 EVSPHRAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLV 115
+++ RA++ L +++ GA+++L + SG L D RLV
Sbjct: 7 QLTGARAIALATLDKVRTSGAYSNLQLNQALESGQ----------------LSGADRRLV 50
Query: 116 TDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDE 174
T +V GT++ +R LD+ + +K + P + +L + ++ LD +P +A DE
Sbjct: 51 TALVYGTLQHQRTLDYWLSPFIAGKK----VRPWVKTLLLMALFQYQYLDRVPNFAATDE 106
Query: 175 NVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMV 234
+ +AK PG V G+L ++ N + K+E D Q LA S P W+V
Sbjct: 107 AIEIAKRRGNPGVRRFVTGVLHAIL---RNGVADVEKIE--DPKQ--RLAIQASLPDWLV 159
Query: 235 RRWTKYLG--QEEAIKLMVWNNSDPSFSLRANSRKG-VTRADLVMQLNLLKLQVPHELSL 291
G Q EA+ ++ N SLR N K V A +++ ++ + P E++
Sbjct: 160 DELVAQYGLAQTEALAKVI--NEPARISLRVNRAKATVEEAQALLRSAGVETK-PSEVA- 215
Query: 292 HLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTL 351
+ V G V++ K G+ +QDESA L V + + ++D CAAPGGKT+
Sbjct: 216 --QNGLVVTKG--AVLKTAAFKNGVVTIQDESAMLAVESMHLTGHERVLDACAAPGGKTV 271
Query: 352 YMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT----FADNSTVKC 407
+A L+ G VYA+DI++ ++ ++ + A+ V+ + D R FAD
Sbjct: 272 QIAETLT-DGEVYALDIHRHKVGLIEKNAQRMGVDDRVFACQLDARQVGQEFADQF---F 327
Query: 408 DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467
D++L+DAPCSG+G+L ++ ++R++++L D + L +Q +LD+ + VK GG++ YSTC+
Sbjct: 328 DQILVDAPCSGMGLLRRKPEIRYDKQLGDSQRLHQIQGAILDSVATKVKKGGIITYSTCT 387
Query: 468 IDPEENEERVEAFLLRHPEFSIDPAD--------------GLVPSDFVTKHGFFFSD 510
I +EN+E V FL HP F + L+PSD+ + GFF S+
Sbjct: 388 ILRQENDETVAEFLKHHPNFRLQKTTTARMLKDNRQAQTLTLLPSDYGSD-GFFISN 443
>gi|227515682|ref|ZP_03945731.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus fermentum
ATCC 14931]
gi|227085930|gb|EEI21242.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus fermentum
ATCC 14931]
Length = 448
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 142/477 (29%), Positives = 238/477 (49%), Gaps = 62/477 (12%)
Query: 56 EVSPHRAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLV 115
+++ RA++ L +++ GA+++L + SG L D RLV
Sbjct: 7 QLTGARAIALATLDKVRTSGAYSNLQLNQALESGQ----------------LSGADRRLV 50
Query: 116 TDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDE 174
T +V GT++ +R LD+ + +K ++ LLL L ++ LD +P +A DE
Sbjct: 51 TALVYGTLQHQRTLDYWLSPFIAGKKVRPWVKTLLLMTL----FQYQYLDRVPNFAATDE 106
Query: 175 NVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMV 234
+ +AK PG V G+L ++ N + K+E D Q LA S P W+V
Sbjct: 107 AIEIAKRRGNPGVRRFVTGVLHAIL---RNGVADVEKIE--DPKQ--RLAIQASLPDWLV 159
Query: 235 RRWTKYLG--QEEAIKLMVWNNSDPSFSLRANSRKG-VTRADLVMQLNLLKLQVPHELSL 291
G Q EA+ ++ N SLR N K V A +++ ++ + P E++
Sbjct: 160 DELVAQYGLAQTEALAKVI--NEPARISLRVNRAKATVEEAQALLRSAGVETK-PSEVA- 215
Query: 292 HLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTL 351
+ V G V++ K G+ +QDESA L V + + ++D CAAPGGKT+
Sbjct: 216 --QNGLVVTKGA--VLKTAAFKNGVVTIQDESAMLAVESMHLTGHERVLDACAAPGGKTV 271
Query: 352 YMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT----FADNSTVKC 407
+A L+ G VYA+DI++ ++ ++ + A+ V++ + D R FAD
Sbjct: 272 QIAEALT-DGEVYALDIHRHKVGLIEKNAQRMGVDNRVFARQLDARQVGQEFADQF---F 327
Query: 408 DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467
D++L+DAPCSG+G+L ++ ++R++++L D + L +Q +LD+ + VK GG++ YSTC+
Sbjct: 328 DQILVDAPCSGMGLLRRKPEIRYDKQLGDSQRLHQIQGAILDSVATKVKKGGIITYSTCT 387
Query: 468 IDPEENEERVEAFLLRHPEFSIDPAD--------------GLVPSDFVTKHGFFFSD 510
I +EN+E V FL HP F + L+PSD+ + GFF S+
Sbjct: 388 ILRQENDETVAEFLKHHPNFRLQKTTTARMLEDNRQAQTLTLLPSDYGSD-GFFISN 443
>gi|381403015|ref|ZP_09927699.1| 16S rRNA methyltransferase B [Pantoea sp. Sc1]
gi|380736214|gb|EIB97277.1| 16S rRNA methyltransferase B [Pantoea sp. Sc1]
Length = 433
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 135/423 (31%), Positives = 208/423 (49%), Gaps = 38/423 (8%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
K L D+D LV +I G +R L+ LI L E+ + + +L ++ +G Y++
Sbjct: 34 KKLTDKDSALVQEICFGVLRTLPQLEALIGKLM--ERPLTGKQRVLHYLIMVGLYQLEYT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P +A + E V A+V R L+NG+LR+ + +L +G R
Sbjct: 92 RVPAHAALAETVAGAEVLKRTSLKGLLNGVLRQFQ--RQRETLLASIQDGPQR------- 142
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLK-- 282
Y HP W+++R ++ E+ ++ NN P LR N + A L M +
Sbjct: 143 --YLHPGWLLKR-LQHAWPEQWEHIVEANNLRPPMWLRVNRQHHSRDAWLTMLTESGRNA 199
Query: 283 ---LQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSI 339
VP L L + + G +G VQD SA +++PQ G+ I
Sbjct: 200 QPAADVPDALRLDVPALVSQLPGF---------DQGWVTVQDLSAQRCALLLEPQNGEQI 250
Query: 340 VDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF 399
+D CAAPGGKT ++ ++ V A+D++ RL+ ++E L ++ D RT
Sbjct: 251 LDLCAAPGGKTTHILE-IAPDADVLAVDVDAQRLKRVDEN--LQRLGMKAEVKQGDGRTP 307
Query: 400 AD-NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPG 458
+ D++LLDAPCS GV+ + D++W RR D+ EL LQ E+LDA +KPG
Sbjct: 308 QQWCGDRQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAKLQREILDAIWPHLKPG 367
Query: 459 GVLVYSTCSIDPEENEERVEAFLLRHPEFSID-----PADGL-VPSDFVTKHGFFFSDPI 512
G L+Y+TCSI PEEN +++EAFL R + + PA GL V D GFF++ I
Sbjct: 368 GTLIYATCSILPEENHQQIEAFLQRQHDAQAEPLRDAPASGLQVFPDAEGGDGFFYAKLI 427
Query: 513 KHS 515
K+S
Sbjct: 428 KNS 430
>gi|308188325|ref|YP_003932456.1| ribosomal RNA small subunit methyltransferase B [Pantoea vagans
C9-1]
gi|308058835|gb|ADO11007.1| Ribosomal RNA small subunit methyltransferase B [Pantoea vagans
C9-1]
Length = 433
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 134/424 (31%), Positives = 212/424 (50%), Gaps = 40/424 (9%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
K L D+D LV +I G +R L+ LI L E+ + + +L ++ +G Y++
Sbjct: 34 KKLSDKDSALVQEICFGVLRTLPQLEALIGRLM--ERPLTGKQRVLHYLIMVGLYQLEYT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P +A + E V A+V R L+NG+LR+ R + LA
Sbjct: 92 RVPAHAALAETVAGAEVLKRTSLKGLLNGVLRQF-----------------QRQREELLA 134
Query: 225 TI------YSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQL 278
+I Y HP W+++R ++ E+ +++ NN P LR N + A L M +
Sbjct: 135 SIQDGPQRYLHPGWLLKR-LQHAWPEQWQQIVEANNLRPPMWLRVNRQHHNRDAWLAMLV 193
Query: 279 NLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQS 338
+ + P + + + +R+ V Q +G VQD SA +++PQ G+
Sbjct: 194 EIDRNAQPAD---DVPDALRLDAPA-PVSQLPGFDQGWVTVQDLSAQRCALLLEPQNGEQ 249
Query: 339 IVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT 398
I+D CAAPGGKT ++ ++ + V A+D++ RL+ + E L ++ D RT
Sbjct: 250 ILDLCAAPGGKTTHILE-IAPEAEVMAVDVDAQRLKRVEEN--LQRLGMKADVKQGDGRT 306
Query: 399 FAD-NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKP 457
+ D++LLDAPCS GV+ + D++W RR D+ EL LQ E+LDA +KP
Sbjct: 307 PQQWCGDRQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAKLQSEILDAIWPHLKP 366
Query: 458 GGVLVYSTCSIDPEENEERVEAFLLRHPEFSID-----PADGL-VPSDFVTKHGFFFSDP 511
GG L+Y+TCSI PEEN +++EAFL R + + PA+GL V GFF++
Sbjct: 367 GGTLIYATCSILPEENHQQIEAFLQRQHDAQAESLRGAPANGLQVFPQAEGGDGFFYAKL 426
Query: 512 IKHS 515
IK S
Sbjct: 427 IKKS 430
>gi|291530595|emb|CBK96180.1| ribosomal RNA small subunit methyltransferase RsmB [Eubacterium
siraeum 70/3]
Length = 439
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 113/388 (29%), Positives = 203/388 (52%), Gaps = 17/388 (4%)
Query: 101 GFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYE 160
F D D RD + G + R LD+LI E F ++ +++ILR+GFY+
Sbjct: 29 AFTQNDADRRDKAFSAALFYGVLERRMTLDYLIRYYSGIE--FDKIKTAVVEILRMGFYQ 86
Query: 161 IVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQ 219
++ ++ +P A V+E+V L A VN ILR L++ + L G +
Sbjct: 87 LLFMNSVPDSAAVNESVALCDYCNSTKAKGYVNAILR--TFLRNEKQIDYGNLTGEAK-- 142
Query: 220 ARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLN 279
L+ YS P W+V++W LG++ A++++ P R N+ + D++ +L
Sbjct: 143 ---LSIEYSCPKWLVKKWNSELGEQRAMQMINSCFGRPPIYARVNTVRYAVD-DVIGELE 198
Query: 280 LLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSI 339
+ SL +D I + + + Q+ K+G+ +QD S+ + + P +++
Sbjct: 199 SEGISAAKN-SL-IDACIEL-ANTKGIEQSSAYKKGMFHIQDISSQICCKIAAPMFNETV 255
Query: 340 VDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF 399
VD C+APGGKT A ++ +G +Y+ D+ G++ ++ TAK + ++I D F
Sbjct: 256 VDLCSAPGGKTFTCAEIMNDRGRIYSYDLYDGKVSVIANTAKRLGL-TIITAAENDATKF 314
Query: 400 ADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGG 459
+ K D+V+ D PCSGLGV+ ++ ++++ + ++ +E L Q ++++ A+ VKPGG
Sbjct: 315 -NPDIPKADRVVCDVPCSGLGVIRRKPEIKY-KPMKQLETLPDTQRKIINNAAEYVKPGG 372
Query: 460 VLVYSTCSIDPEENEERVEAFLLRHPEF 487
LVYSTC++ EN++ V+ FL H +F
Sbjct: 373 TLVYSTCTVSRTENDDIVDEFLKEHSDF 400
>gi|417856484|ref|ZP_12501543.1| 16S rRNA methyltransferase B [Streptococcus pyogenes HKU
QMH11M0907901]
gi|387933439|gb|EIK41552.1| 16S rRNA methyltransferase B [Streptococcus pyogenes HKU
QMH11M0907901]
Length = 440
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 133/432 (30%), Positives = 217/432 (50%), Gaps = 41/432 (9%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
K L +D L+T+IV GT+ + L+ L H K ++ + +L + Y++ L
Sbjct: 38 KVLSAKDRALLTEIVYGTVSRKISLE---WYLAHYVKDRDKLDKWVYYLLMLSLYQLTYL 94
Query: 165 D-MPPYAVVDENVRLAKV-ALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARA 222
D +P +A+V++ V +AK + GA VN ILR+ S PLP +E R + +
Sbjct: 95 DKLPAHAIVNDAVGIAKNRGNKKGAEKFVNAILRQFT------SHPLPDMETIKR-RNKY 147
Query: 223 LATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLK 282
+ YS PVW+V++ G A+ +M S +R+ + VT + LK
Sbjct: 148 YSVKYSLPVWLVKKLEDQFGSHRAVAIM------ESLFVRSKASIRVT--------DPLK 193
Query: 283 LQVPHELSLHLDEFIRVKTGLQ----NVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQS 338
L+ E +L + + TGL + + G +QDES+ LV ++
Sbjct: 194 LEEVAE-ALDAERSLLSATGLTKASGHFAASDYFTNGDITIQDESSQLVAPTLNIDGDDI 252
Query: 339 IVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT 398
I+D C+APGGKT ++AS L G V A+D+ +L ++ E A V I T D R
Sbjct: 253 ILDACSAPGGKTSHIASYLK-TGKVIALDLYDHKLELVKENANRLGVADNIETRKLDARE 311
Query: 399 ----FADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLL 454
F +S DK+L+DAPCSG+G++ ++ D+++N+ +D L+ +Q E+L +
Sbjct: 312 VHRHFEKDS---FDKILVDAPCSGIGLIRRKPDIKYNKESQDFNALQAIQLEILSSVCQT 368
Query: 455 VKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKH 514
++ GG++ YSTC+I EEN + +EAFL HP F + +D V K G+ P ++
Sbjct: 369 LRKGGIITYSTCTIFDEENRQVIEAFLQSHPNFEQVKLNH-TQADIV-KDGYLIITPEQY 426
Query: 515 SLDGAFAARLVR 526
DG F ++ R
Sbjct: 427 QTDGFFIGQVRR 438
>gi|239626556|ref|ZP_04669587.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239516702|gb|EEQ56568.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 447
Score = 174 bits (440), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 133/436 (30%), Positives = 206/436 (47%), Gaps = 49/436 (11%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
LD D +T + GT+ + +DH+I + M+PL+ +LR+ Y+I+ +D
Sbjct: 44 LDKSDRAFITRVTEGTLEYLLQIDHIINK--YSRTKTDKMKPLIRNLLRMSVYQILYMDR 101
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P AV +E V+LA G VNG+LR + K + P L
Sbjct: 102 VPDSAVCNEAVKLAVKRRFTGLKGFVNGVLRTISREKASLVFDSPSLA------------ 149
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLM--------VWNNSDPSFSLRANSRKGV-TRADLVM 276
YS P WM W K G +A + W + S +LR K + ++ +V
Sbjct: 150 -YSIPQWMYDMWEKEYGSAKAEMIAASFLEDRPTWVRCNLSRALREAILKSLDSQGVMVK 208
Query: 277 QLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPG 336
+L+ L P L++ +++ QN G VQD ++ V + DP+ G
Sbjct: 209 ELDCL----PSVLAISGYDYMEGLECFQN---------GWIQVQDATSAFVGELADPKEG 255
Query: 337 QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNET-AKLHQVNSVIRTIHAD 395
I+D CAAPGGK+L++A + G G+V A D++ + ++ E A+ N I+ + D
Sbjct: 256 DYIIDVCAAPGGKSLHLADKMKGTGMVEARDLSYQKTALIEENVARSGAAN--IKAVVWD 313
Query: 396 LRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLV 455
+++ K D V+ D PCSGLG++ K+ D+++N ++ M EL LQ ++L V
Sbjct: 314 ALVPDEDAREKADIVIADLPCSGLGIIGKKPDIKYNMTMDKMRELSRLQRDILSVVWQYV 373
Query: 456 KPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPAD--GLVPSDF---VTKHGFFFSD 510
KPGG LVYSTC+IDP ENE + F ++P D G + DF K G
Sbjct: 374 KPGGTLVYSTCTIDPMENEGNA---MWLSENFPLEPVDLSGRLGEDFDEPSLKDGRIQFL 430
Query: 511 PIKHSLDGAFAARLVR 526
P H DG F + R
Sbjct: 431 PGIHPFDGFFISVFRR 446
>gi|21910907|ref|NP_665175.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus pyogenes
MGAS315]
gi|28895403|ref|NP_801753.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus pyogenes SSI-1]
gi|71911150|ref|YP_282700.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus pyogenes
MGAS5005]
gi|209559767|ref|YP_002286239.1| RNA-binding Sun protein [Streptococcus pyogenes NZ131]
gi|306826944|ref|ZP_07460244.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
pyogenes ATCC 10782]
gi|386363182|ref|YP_006072513.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
pyogenes Alab49]
gi|410681000|ref|YP_006933402.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
pyogenes A20]
gi|21905113|gb|AAM79978.1| putative RNA-binding Sun protein [Streptococcus pyogenes MGAS315]
gi|28810649|dbj|BAC63586.1| putative RNA-binding Sun protein [Streptococcus pyogenes SSI-1]
gi|71853932|gb|AAZ51955.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus pyogenes
MGAS5005]
gi|209540968|gb|ACI61544.1| Putative RNA-binding Sun protein [Streptococcus pyogenes NZ131]
gi|304430962|gb|EFM33971.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
pyogenes ATCC 10782]
gi|350277591|gb|AEQ24959.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
pyogenes Alab49]
gi|395454394|dbj|BAM30733.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus pyogenes M1
476]
gi|409693589|gb|AFV38449.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
pyogenes A20]
Length = 440
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 132/432 (30%), Positives = 218/432 (50%), Gaps = 41/432 (9%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
K L +D L+T+IV GT+ + L+ L H K ++ + +L + Y++ L
Sbjct: 38 KALSAKDRALLTEIVYGTVSRKISLE---WYLAHYVKDRDKLDKWVYYLLMLSLYQLTYL 94
Query: 165 D-MPPYAVVDENVRLAKV-ALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARA 222
D +P +A+V++ V +AK + GA VN ILR+ S PLP +E R + +
Sbjct: 95 DKLPAHAIVNDAVGIAKNRGNKKGAEKFVNAILRQFT------SHPLPDMETIKR-RNKY 147
Query: 223 LATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLK 282
+ YS PVW+V++ G + ++ +M S +R+ + VT + LK
Sbjct: 148 YSVKYSLPVWLVKKLEDQFGSDRSVAIM------ESLFVRSKASIRVT--------DPLK 193
Query: 283 LQVPHELSLHLDEFIRVKTGLQ----NVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQS 338
L+ E +L + + TGL + + G +QDES+ LV ++
Sbjct: 194 LEEVAE-ALDAERSLLSATGLTKASGHFAASDYFTNGDITIQDESSQLVAPTLNIDGDDI 252
Query: 339 IVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT 398
I+D C+APGGKT ++AS L G V A+D+ +L ++ E A V I T D R
Sbjct: 253 ILDACSAPGGKTSHIASYLK-TGKVIALDLYDHKLELVKENANRLGVADNIETRKLDARE 311
Query: 399 ----FADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLL 454
F +S DK+L+DAPCSG+G++ ++ D+++N+ +D L+ +Q E+L +
Sbjct: 312 VHRHFEKDS---FDKILVDAPCSGIGLIRRKPDIKYNKESQDFNALQAIQLEILSSVCQT 368
Query: 455 VKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKH 514
++ GG++ YSTC+I EEN + +EAFL HP F + +D V K G+ P ++
Sbjct: 369 LRKGGIITYSTCTIFDEENRQVIEAFLQSHPNFEQVKLNH-TQADIV-KDGYLIITPEQY 426
Query: 515 SLDGAFAARLVR 526
DG F ++ R
Sbjct: 427 QTDGFFIGQVRR 438
>gi|322388304|ref|ZP_08061908.1| RNA methyltransferase Sun [Streptococcus infantis ATCC 700779]
gi|419842399|ref|ZP_14365747.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
infantis ATCC 700779]
gi|321140976|gb|EFX36477.1| RNA methyltransferase Sun [Streptococcus infantis ATCC 700779]
gi|385703876|gb|EIG40978.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
infantis ATCC 700779]
Length = 437
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 121/379 (31%), Positives = 201/379 (53%), Gaps = 25/379 (6%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPY 169
D LVT++V GT+ + L+ + D S L +L + Y++ LD +P +
Sbjct: 42 DKGLVTELVYGTVARKLTLEWYLSHFIEDRDKLDSW---LYILLLMSVYQLEYLDKLPDH 98
Query: 170 AVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSH 229
AVV+E+V +AK+ + G+ LVN +LR++ L++ LP + R R + YS
Sbjct: 99 AVVNESVEIAKLR-KKGSEKLVNAVLRRI--LREG----LPDIASIKRKNKRD-SIAYSL 150
Query: 230 PVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHEL 289
PVW+V + + G+E A + SL ++ + DL + + K+ +
Sbjct: 151 PVWLVSKLKEEYGEERAQAIFE--------SLLQRNKASIRVTDLSRKEEIKKMLDASDS 202
Query: 290 SLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGK 349
+L ++ + L EGL +QDES+ LV +D Q + ++D CAAPGGK
Sbjct: 203 ALSASGLVKEQGHFAG---HDLFSEGLITIQDESSQLVTPTLDLQGEEQVLDACAAPGGK 259
Query: 350 TLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVKCD 408
T +MAS L+ G V A+D+ +L ++ E A+ V ++T D R + + D
Sbjct: 260 TAHMASYLT-TGQVTALDLYDHKLTLIQENAERLGVADRVQTQKLDARKVHEFFGKDQFD 318
Query: 409 KVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSI 468
K+L+DAPCSG+G+L ++ D+++N+ D L+ +Q E+L + ++ GG++ YSTC+I
Sbjct: 319 KILVDAPCSGIGLLRRKPDIKYNKDTADFASLQEIQLEILGSVCQTLRKGGIITYSTCTI 378
Query: 469 DPEENEERVEAFLLRHPEF 487
EEN + V+AFL HPEF
Sbjct: 379 VSEENFQVVQAFLESHPEF 397
>gi|302341793|ref|YP_003806322.1| sun protein [Desulfarculus baarsii DSM 2075]
gi|301638406|gb|ADK83728.1| sun protein [Desulfarculus baarsii DSM 2075]
Length = 443
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 130/419 (31%), Positives = 198/419 (47%), Gaps = 14/419 (3%)
Query: 110 RDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPPY 169
RD + T++ +R R +LDHL+ L + + ++ + LR+G E+V L P +
Sbjct: 38 RDKAMATNLTHTVLRHRAWLDHLLTPLV--SRPLAKLDAPVRAALRLGAAELVVLATPAH 95
Query: 170 AVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSH 229
A V V K A LVNG+LR L + P + DR L +SH
Sbjct: 96 AAVGATVEAVKAGPAAKASGLVNGVLRALTRALPAAAQAEPPGDELDR-----LCLRHSH 150
Query: 230 PVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV-PHE 288
P W++ + G E+A N S P LR N+ K + A + L + V H
Sbjct: 151 PRWLLEPLARRFGLEQAAAWAQANQSQPPLCLRVNALK-ASPAQVAESLAPVCEAVEAHA 209
Query: 289 LSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGG 348
L+ E + V+ + +EGL QD A + ++ PG +++D CA GG
Sbjct: 210 LA---PEALIVRGAAGPLWDLPGFREGLWQAQDAGAQALGRLLGVGPGMTVLDLCAGAGG 266
Query: 349 KTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCD 408
K+ ++A+ ++ QG + A+D + GRL L E V +++ + AD + D +
Sbjct: 267 KSGHLAALMANQGRIVAVDDSAGRLEALAENMARLGV-TIVEPVLADGAAW-DGGGRLFE 324
Query: 409 KVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSI 468
+L+DAPCSGLGV+ +R D+RW R D + +Q L A+ L+ PGG LVY TC++
Sbjct: 325 AILVDAPCSGLGVIGRRPDIRWRRSPADSAAMARIQLALARNAARLLAPGGALVYCTCTV 384
Query: 469 DPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARLVRA 527
ENE A L PE A + + GF+ S P + D FAARLV+A
Sbjct: 385 AEAENEGVARALLAARPELRPSWAGAEAAGEMIGADGFWRSFPRPMAADSFFAARLVKA 443
>gi|410495482|ref|YP_006905328.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
dysgalactiae subsp. equisimilis AC-2713]
gi|410440642|emb|CCI63270.1| K03500 ribosomal RNA small subunit methyltransferase B
[Streptococcus dysgalactiae subsp. equisimilis AC-2713]
Length = 452
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 131/435 (30%), Positives = 218/435 (50%), Gaps = 41/435 (9%)
Query: 104 TKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVK 163
K L +D L+T+IV GT+ + L+ L H K ++ + +L + Y+++
Sbjct: 49 NKALSTKDRALLTEIVYGTVSRKISLE---WYLAHYVKDRDKLDKWVYYLLMLSLYQLIY 105
Query: 164 LD-MPPYAVVDENVRLAKV-ALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQAR 221
LD +P +A+V++ V +AK + GA VN ILR+ S PLP + G + + +
Sbjct: 106 LDKLPAHAIVNDAVGIAKNRGNKKGAEKFVNAILRQFT------SHPLPDM-GTIKRRNK 158
Query: 222 ALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLL 281
+ YS PVW+V++ G + ++ +M S +R+ + VT + L
Sbjct: 159 YYSVKYSLPVWLVKKLEDQFGSDRSVAIM------ESLFVRSKASIRVT--------DPL 204
Query: 282 KLQVPHELSLHLDEFIRVKTGLQ----NVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQ 337
KL+ E L + + TGL + + G +QDES+ LV + +
Sbjct: 205 KLEKIAE-DLDAERSLLSATGLTKASGHFAASDYFANGDITIQDESSQLVAPTLSIDGDE 263
Query: 338 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR 397
I+D C+APGGKT ++AS L G V A+D+ +L ++ E A V I T D R
Sbjct: 264 IILDACSAPGGKTSHIASYLK-TGKVIALDLYDHKLELVKENANRLGVADNIETRKLDAR 322
Query: 398 T----FADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASL 453
F +S DK+L+DAPCSG+G++ ++ D+++N+ +D L+ +Q E+L +
Sbjct: 323 EVHRHFEKDS---FDKILVDAPCSGIGLIRRKPDIKYNKESQDFNALQAIQLEILSSVCQ 379
Query: 454 LVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIK 513
++ GG++ YSTC+I EEN + +EAFL HP F + +D V K G+ P +
Sbjct: 380 TLRKGGIITYSTCTIFDEENRQVIEAFLQSHPNFEQVKLNH-TQADIV-KDGYLIITPEQ 437
Query: 514 HSLDGAFAARLVRAF 528
+ DG F ++ R
Sbjct: 438 YQTDGFFIGQVRRVL 452
>gi|94544470|gb|ABF34518.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus pyogenes
MGAS10270]
Length = 440
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 131/433 (30%), Positives = 219/433 (50%), Gaps = 41/433 (9%)
Query: 104 TKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVK 163
K L +D L+T+IV GT+ + L+ L H K ++ + +L + Y+++
Sbjct: 37 NKALSAKDRALLTEIVYGTVSRKISLE---WYLAHYVKDRDKLDKWVYYLLMLSLYQLIY 93
Query: 164 LD-MPPYAVVDENVRLAKV-ALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQAR 221
LD +P +A+V++ V +AK + GA VN ILR+ + PLP +E R + +
Sbjct: 94 LDKLPAHAIVNDAVGIAKNRGNKKGAEKFVNAILRQFT------NHPLPDMETIKR-RNK 146
Query: 222 ALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLL 281
+ YS PVW+V++ G + ++ +M S +R+ + VT + L
Sbjct: 147 YYSVKYSLPVWLVKKLEDQFGSDRSVAIM------ESLFVRSKASIRVT--------DPL 192
Query: 282 KLQVPHELSLHLDEFIRVKTGLQ----NVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQ 337
KL+ E +L + + TGL + + G +QDES+ LV ++
Sbjct: 193 KLEEVAE-ALDAERSLLSATGLTKASGHFAASDYFTNGDITIQDESSQLVAPTLNIDGDD 251
Query: 338 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR 397
I+D C+APGGKT ++AS L G V A+D+ +L ++ E A V I T D R
Sbjct: 252 IILDACSAPGGKTSHIASYLK-TGKVIALDLYDHKLELVKENANRLGVADNIETRKLDAR 310
Query: 398 T----FADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASL 453
F +S DK+L+DAPCSG+G++ ++ D+++N+ +D L+ +Q E+L +
Sbjct: 311 EVHRHFEKDS---FDKILVDAPCSGIGLIRRKPDIKYNKESQDFNALQAIQLEILSSVCQ 367
Query: 454 LVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIK 513
++ GG++ YSTC+I EEN + +EAFL HP F + +D V K G+ P +
Sbjct: 368 TLRKGGIITYSTCTIFDEENRQVIEAFLQSHPNFEQVKLNH-TQADIV-KDGYLIITPEQ 425
Query: 514 HSLDGAFAARLVR 526
+ DG F ++ R
Sbjct: 426 YQTDGFFIGQVRR 438
>gi|317472520|ref|ZP_07931840.1| ribosomal RNA small subunit methyltransferase B [Anaerostipes sp.
3_2_56FAA]
gi|316899997|gb|EFV21991.1| ribosomal RNA small subunit methyltransferase B [Anaerostipes sp.
3_2_56FAA]
Length = 448
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 130/430 (30%), Positives = 207/430 (48%), Gaps = 29/430 (6%)
Query: 108 DDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-M 166
+ +D T + GT+ R +D++I L ++ M+PL+ +LR+G +I+ +D +
Sbjct: 37 EKKDRAFFTRLCQGTLERRLTIDYVIDLYSKTKE--RKMKPLVRSLLRMGACQILFMDHI 94
Query: 167 PPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATI 226
P A +E V+LAK VNG+LR + + +P P ++ + L+
Sbjct: 95 PDSAACNECVKLAKKRGFSKLSGFVNGVLR--TISRQKQEIPFP---DRNKDFVKYLSVA 149
Query: 227 YSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV- 285
S P W++R + + +EE + +V + +P + + +R +L+ L +V
Sbjct: 150 CSMPEWIIRHFLRSYSEEET-ETIVSSFLEPKKTTVSWMESSGSREELIASLEKDGAKVE 208
Query: 286 -----PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIV 340
P L + +F+R T +EG VQDES+ L DP+ GQ I+
Sbjct: 209 DGKLLPEALRISHYDFLRRLTSF---------REGRFIVQDESSMLAGKAADPKEGQKIL 259
Query: 341 DCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 400
D C+APGGK LY A L G G V A D+ + + +L E + + IRT D R
Sbjct: 260 DMCSAPGGKALYAADKLHGTGQVLARDLTEYKEELLKENIERVGFEN-IRTQIWDARIPD 318
Query: 401 DNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGV 460
+ D VL D PCSGLG++ K+ D+++N +E+L LQ E+L A VKPGG
Sbjct: 319 ERLAESMDVVLCDVPCSGLGIMGKKQDIKYNLEESALEDLVKLQREILKTALTYVKPGGS 378
Query: 461 LVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDF---VTKHGFFFSDPIKHSLD 517
L++STC+I+P+ENEE +L + + +P K G+ P H D
Sbjct: 379 LLFSTCTINPKENEENFR-WLAGQTGYEPEDLTPFLPETLDIKTAKEGYIQLLPGIHPCD 437
Query: 518 GAFAARLVRA 527
G F +L R
Sbjct: 438 GFFIGKLRRT 447
>gi|260663557|ref|ZP_05864447.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
fermentum 28-3-CHN]
gi|260552098|gb|EEX25151.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
fermentum 28-3-CHN]
Length = 448
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 142/477 (29%), Positives = 237/477 (49%), Gaps = 62/477 (12%)
Query: 56 EVSPHRAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLV 115
+++ RA++ L +++ GA+++L + SG L D RLV
Sbjct: 7 QLTGARAIALATLDKVRTSGAYSNLQLNQALESGQ----------------LSGADRRLV 50
Query: 116 TDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDE 174
T +V GT++ +R LD+ + +K ++ LLL L ++ LD +P +A DE
Sbjct: 51 TALVYGTLQHQRTLDYWLSPFIAGKKVRPWVKTLLLMTL----FQYQYLDRVPNFAATDE 106
Query: 175 NVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMV 234
+ +AK PG V G+L ++ N + K+E D Q LA S P W+V
Sbjct: 107 AIEIAKRRGNPGVRRFVTGVLHAIL---RNGVADVEKIE--DPKQ--RLAIQASLPDWLV 159
Query: 235 RRWTKYLG--QEEAIKLMVWNNSDPSFSLRANSRKG-VTRADLVMQLNLLKLQVPHELSL 291
G Q EA+ ++ N SLR N K V A +++ ++ + P E++
Sbjct: 160 DELVAQYGLAQTEALAKVI--NEPARISLRVNRAKATVEEAQALLRSAGVETK-PSEVA- 215
Query: 292 HLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTL 351
+ V G V++ K G+ +QDESA L V + + ++D CAAPGGKT+
Sbjct: 216 --QNGLVVTKG--AVLKTAAFKNGVVTIQDESAMLAVESMHLTGHERVLDACAAPGGKTV 271
Query: 352 YMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT----FADNSTVKC 407
+A L+ G VYA+DI++ ++ ++ + A+ V+ + D R FAD
Sbjct: 272 QIAEALT-DGEVYALDIHRHKVGLIEKNAQRMGVDDRVFARQLDARQVGQEFADQF---F 327
Query: 408 DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467
D++L+DAPCSG+G+L ++ ++R++++L D + L +Q +LD+ + VK GG++ YSTC+
Sbjct: 328 DQILVDAPCSGMGLLRRKPEIRYDKQLGDSQRLHQIQGAILDSVATKVKKGGIITYSTCT 387
Query: 468 IDPEENEERVEAFLLRHPEFSIDPAD--------------GLVPSDFVTKHGFFFSD 510
I +EN+E V FL HP F + L+PSD+ + GFF S+
Sbjct: 388 ILRQENDETVAEFLKHHPNFRLQKTTTARMLKDNRQAQTLTLLPSDYGSD-GFFISN 443
>gi|377579903|ref|ZP_09808861.1| ribosomal RNA small subunit methyltransferase B [Escherichia
hermannii NBRC 105704]
gi|377538770|dbj|GAB54026.1| ribosomal RNA small subunit methyltransferase B [Escherichia
hermannii NBRC 105704]
Length = 430
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 129/420 (30%), Positives = 212/420 (50%), Gaps = 32/420 (7%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
+ + ++D L+ ++ G +R L+ I L + + + L ++ +G Y+++
Sbjct: 34 QKVPEKDKALLQELSFGVLRTLSQLEWFIGKLM--ARPMTGKQRTLHYLIMVGLYQLLYT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+PP+A + E V A V RP L+NG+LR+ + +L N+ AQ +
Sbjct: 92 RIPPHAALAETVEGAVVLKRPQLKGLINGVLREFQ--RQQEAL------LNEFAQHDSR- 142
Query: 225 TIYSHPVWMVRRW-TKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKL 283
+ HP W+V+R T Y Q E I + NN P LR N + A L +
Sbjct: 143 --FLHPSWLVKRLRTAYPAQWEEI--VEANNQRPPMWLRVNRQHHSRDAWLALLEESGIT 198
Query: 284 QVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCC 343
PH + +R++T + G ++G VQD SA + ++DPQ G+ I+D C
Sbjct: 199 GFPHS---DYPDAVRLETPVSVHTLPGF-EQGWVTVQDASAQGCIPLLDPQDGEDILDLC 254
Query: 344 AAPGGKTLYMASCLSGQGLVYAIDINKGRL-RILNETAKLHQVNSVIRTIHADLRTFADN 402
AAPGGKT ++ + V A+DI++ RL R+ +L +V + + + +N
Sbjct: 255 AAPGGKTTHILEA-APHANVMAVDIDEQRLSRVYENLKRLGMTATVKQGDGRYPQQWCEN 313
Query: 403 STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLV 462
+ D++LLDAPCS GV+ + D++W RR D+ EL LQ ++LDA L+KPGG L+
Sbjct: 314 K--QFDRILLDAPCSATGVIRRHPDIKWLRRDRDISELAALQSQILDAIWPLLKPGGTLL 371
Query: 463 YSTCSIDPEENEERVEAFLLRHPEFSI-------DPADGLVPSDFVTKHGFFFSDPIKHS 515
Y+TCS+ PEEN ++V AFL R P+ + P +P+ GFF++ +K +
Sbjct: 372 YATCSVLPEENTQQVAAFLKRTPDAQLTLTGTPDSPGIQNLPAS-TEGDGFFYAKLLKKA 430
>gi|357638303|ref|ZP_09136176.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
urinalis 2285-97]
gi|418417388|ref|ZP_12990584.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
urinalis FB127-CNA-2]
gi|357586757|gb|EHJ56165.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
urinalis 2285-97]
gi|410871864|gb|EKS19810.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
urinalis FB127-CNA-2]
Length = 440
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 127/430 (29%), Positives = 217/430 (50%), Gaps = 27/430 (6%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
+ L ++D LVT+IV GT+ + L+ + D + +E + +L + Y+I
Sbjct: 35 LKASQLSEKDKSLVTEIVYGTVARKMTLEWYLSHYIEDRE---KIEKWVYYLLLLSLYQI 91
Query: 162 VKLD-MPPYAVVDENVRLAKV-ALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQ 219
+ LD +P +AVV+E V +AK R GA VN ILRK+ LP + R +
Sbjct: 92 IYLDKIPNHAVVNEAVNIAKNRGNRKGAEKYVNAILRKIT------QEELPDIHSIKR-K 144
Query: 220 ARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLN 279
+ + +YS PVW+V++ G++ A +M S R+ + VT + +
Sbjct: 145 NKKYSILYSIPVWLVKKLMDQFGEQRAKAIM------ESLFQRSKASIRVTDVSKLESIQ 198
Query: 280 LLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSI 339
L +LS + + N L +G +QDES+ LV + + I
Sbjct: 199 TLTNTQKSQLST-----VGLVKEHGNFSTDALFLKGEITIQDESSQLVAPTLKIENNDII 253
Query: 340 VDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF 399
+D C+APGGKT++MAS L+ G V A+D+ + +L ++N+ AK ++ I T D R
Sbjct: 254 LDACSAPGGKTVHMASYLTN-GRVIALDLYQHKLNLVNDNAKRLHLSDKIETKQLDARKV 312
Query: 400 AD-NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPG 458
+ S DK+L+DAPCSG+G++ ++ D+++ + D + L+ +Q E+L + +K G
Sbjct: 313 HEVFSADSFDKILVDAPCSGIGLIRRKPDIKYQKSTLDFQNLQAIQLEILSSVCQTIKKG 372
Query: 459 GVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDG 518
G++ YSTC+I EEN + + +FL HP F + + + + G P ++ DG
Sbjct: 373 GIITYSTCTIFDEENFQVINSFLETHPNF--EQVNLNHRQKDIVRDGCIAITPEQYQTDG 430
Query: 519 AFAARLVRAF 528
F A++ R +
Sbjct: 431 FFIAQVKRVW 440
>gi|229140511|ref|ZP_04269066.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus cereus
BDRD-ST26]
gi|228643072|gb|EEK99348.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus cereus
BDRD-ST26]
Length = 360
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 113/332 (34%), Positives = 179/332 (53%), Gaps = 15/332 (4%)
Query: 161 IVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQ 219
++ LD +P A + E V +AK G +VNG+LR + +P E D +
Sbjct: 1 MIYLDRVPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSI----QREGVPSVD-EIKDPVE 55
Query: 220 ARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLN 279
A+AT SHP+W+V+ WT G E A K+ N P + R N K + + +
Sbjct: 56 RLAIAT--SHPIWLVQEWTSEYGLETAEKMCEVNMLPPVPTARVNVDKITVEGAIALLAS 113
Query: 280 LLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSI 339
+LS D+ I+++ G NV K+G ++QDES+ LV ++P G +
Sbjct: 114 EGIEAKRGDLS---DDAIQIEKG--NVAHTDAFKKGFLSIQDESSMLVARALEPDEGDVV 168
Query: 340 VDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF 399
+D CAAPGGKT ++A L G G V ++D++ ++R++ + A+ + +V T D R
Sbjct: 169 LDSCAAPGGKTTHIAERLKGTGQVMSLDLHAHKVRLIKQQAERLGLGNV-ETKALDARKV 227
Query: 400 ADN-STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPG 458
++ + DK+L+DAPCSG GV+ ++ D++ + D E L +Q +L+ + L+K G
Sbjct: 228 QEHFANETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSERLSTIQLAILEKIAPLLKQG 287
Query: 459 GVLVYSTCSIDPEENEERVEAFLLRHPEFSID 490
G LVYSTC+I+ ENE+ +E FL HPEF D
Sbjct: 288 GRLVYSTCTIEKIENEQVIERFLQEHPEFEWD 319
>gi|419960317|ref|ZP_14476359.1| 16S rRNA methyltransferase B [Enterobacter cloacae subsp. cloacae
GS1]
gi|388604809|gb|EIM34037.1| 16S rRNA methyltransferase B [Enterobacter cloacae subsp. cloacae
GS1]
Length = 420
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 130/428 (30%), Positives = 210/428 (49%), Gaps = 39/428 (9%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
+ + D+D L+ ++ G +R L+ LI L + S + + ++ +GFY+++
Sbjct: 25 QKVSDKDKALLQELCFGVLRTLSQLEWLINKLM--SRPMSGKQRTVHYLIMVGFYQLLHT 82
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+PP+A + E V A RP L+NG+LR+ +D L +++AR L
Sbjct: 83 RIPPHAALAETVEGAVAIKRPQLKGLINGVLRQFQRQQDE------LLAEFAQSEARFL- 135
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVM-----QLN 279
HP W++ R K Q+ ++ NN P LR N A L +
Sbjct: 136 ----HPEWLLNRLKKAYPQQWQ-DIVDANNQRPPMWLRVNRNHHTRDAWLALLEETGMSG 190
Query: 280 LLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSI 339
P + L + G + EG VQD SA +A ++P+ G+ I
Sbjct: 191 FTHAAYPDAVRLASPAPVHALPGFE---------EGWVTVQDASAQGCMAWLEPKDGEQI 241
Query: 340 VDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF 399
+D CAAPGGKT ++ ++ Q V A+D+++ RL + + K + + ++ D R
Sbjct: 242 LDLCAAPGGKTTHILE-VAPQASVMAVDVDEQRLSRVYDNLKRLGMKAQVK--QGDGRKP 298
Query: 400 AD-NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPG 458
AD + D++LLDAPCS GV+ + D++W RR D++EL LQ E+LDA +KPG
Sbjct: 299 ADWCGDTRFDRILLDAPCSATGVIRRHPDIKWLRRDRDIKELAQLQSEILDAIWPHLKPG 358
Query: 459 GVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDG 518
G LVY+TCS+ PEEN +++ AFL R P+ ++ D P +H + P DG
Sbjct: 359 GTLVYATCSVLPEENSQQIAAFLKRTPDATLH--DTGTP-----EHPGLQNLPGAEEGDG 411
Query: 519 AFAARLVR 526
F A+L++
Sbjct: 412 FFYAKLIK 419
>gi|320527282|ref|ZP_08028467.1| ribosomal RNA small subunit methyltransferase B [Solobacterium
moorei F0204]
gi|320132306|gb|EFW24851.1| ribosomal RNA small subunit methyltransferase B [Solobacterium
moorei F0204]
Length = 405
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 122/422 (28%), Positives = 213/422 (50%), Gaps = 55/422 (13%)
Query: 99 TLGFRTKDLDDRDLRLVTDIVGGTIR--------WRRYLDHLICLLCHDEKTFSSMEPLL 150
+L R ++ ++ L ++I+ GTIR WR + H+ +P +
Sbjct: 22 SLLLRRANISKEEMGLASEIIYGTIRNKTLLEEQWRPFTKHV--------------KPRV 67
Query: 151 LQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPL 209
+ +L + Y+++ LD +P YAV+ E V LA + + VN +LRK+ + L
Sbjct: 68 VALLNMSVYQLLFLDSIPSYAVIFEAVELAGKSEK----EFVNAVLRKVQVAG------L 117
Query: 210 PKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSL-RANSRKG 268
K GN LA + SHP+W+++ W + G E +K + +N +PS R N+ K
Sbjct: 118 RKPAGNT---IEELAVLTSHPLWILQLWKAHYGFE-TMKEIALHNQEPSLVYGRVNTLK- 172
Query: 269 VTRADLVMQLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQ-AGLLKEGLCAVQDESAGLV 327
+ ++ Q+P L D F ++Q L +G+ +QD + V
Sbjct: 173 CKKTEIA--------QMPDVRMLEDDCFFYA-----GILQRTELFSKGMVLIQDRHSQKV 219
Query: 328 VAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNS 387
V +D PG ++D CAAPG KT +A + QG + A D+ + R +++E V S
Sbjct: 220 VRKLDVLPGMQVLDACAAPGTKTQQIACLMKNQGKIIATDLYEARCNLIDELMNRTGV-S 278
Query: 388 VIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDEL 447
++ T D D++L+DAPCSGLG LS + ++RW+ ++EL Q+ +
Sbjct: 279 IVSTQQNDATIAGKFPKESFDRILIDAPCSGLGDLSHKPEIRWHLEPTSIDELVHTQEAI 338
Query: 448 LDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFF 507
LDA + ++ GG+LVYSTC+++ +ENE++++ FL++HP + + + L P + GF+
Sbjct: 339 LDANAEYLRVGGILVYSTCTLNRKENEQQIKKFLVKHPNYVLLEEETLFPME-NDADGFY 397
Query: 508 FS 509
++
Sbjct: 398 YA 399
>gi|167747881|ref|ZP_02420008.1| hypothetical protein ANACAC_02610 [Anaerostipes caccae DSM 14662]
gi|167652703|gb|EDR96832.1| ribosomal RNA small subunit methyltransferase B [Anaerostipes
caccae DSM 14662]
Length = 448
Score = 173 bits (438), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 130/430 (30%), Positives = 206/430 (47%), Gaps = 29/430 (6%)
Query: 108 DDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-M 166
+ +D T + GT+ R +D++I L + + M+PL+ +LR+G +I+ +D +
Sbjct: 37 EKKDRAFFTRLCQGTLERRLTIDYVIDL--YSKTKVRKMKPLVRSLLRMGACQILFMDHI 94
Query: 167 PPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATI 226
P A +E V+LAK VNG+LR + + +P P ++ + L+
Sbjct: 95 PDSAACNECVKLAKKRGFSKLSGFVNGVLR--TISRQKQEIPFP---DRNKDFEKYLSVA 149
Query: 227 YSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV- 285
S P W++R + + + E + +V + +P + + +R +L+ L +V
Sbjct: 150 CSMPEWIIRHFLRSYSEAET-ETIVSSFLEPKKTTVSWMESSGSREELIASLEKDGAKVE 208
Query: 286 -----PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIV 340
P L + +F+R T +EG VQDES+ L DP+ GQ I+
Sbjct: 209 DGKLLPEALRISHYDFLRRLTSF---------REGRFIVQDESSMLAGKAADPKEGQKIL 259
Query: 341 DCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 400
D C+APGGK LY A L G G V A D+ + + +L E + + IRT D R
Sbjct: 260 DMCSAPGGKALYAADKLHGTGQVLARDLTEYKEELLKENIERVGFEN-IRTQIWDARIPD 318
Query: 401 DNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGV 460
+ D VL D PCSGLG++ K+ D+++N +E+L LQ E+L A VKPGG
Sbjct: 319 ERLAESMDVVLCDVPCSGLGIMGKKQDIKYNLEESALEDLVKLQREILKTALTYVKPGGS 378
Query: 461 LVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDF---VTKHGFFFSDPIKHSLD 517
L++STC+I+P+ENEE +L F + +P K G+ P H D
Sbjct: 379 LLFSTCTINPKENEENFR-WLAGQTGFEPEDLTPFLPETLDIKTVKEGYIQLLPGIHPCD 437
Query: 518 GAFAARLVRA 527
G F +L R
Sbjct: 438 GFFIGKLRRT 447
>gi|367468304|ref|ZP_09468183.1| Ribosomal RNA small subunit methyltransferase B [Patulibacter sp.
I11]
gi|365816611|gb|EHN11630.1| Ribosomal RNA small subunit methyltransferase B [Patulibacter sp.
I11]
Length = 352
Score = 173 bits (438), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 125/327 (38%), Positives = 166/327 (50%), Gaps = 20/327 (6%)
Query: 154 LRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKL 212
L IG YE++ D P A V V LAK L LVN +LR+ V+ D L LP
Sbjct: 18 LHIGLYELLFSDGTPNRAAVASAVELAKPNL---GFKLVNAVLRR-VIDDDGGKLRLPAD 73
Query: 213 EGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANS-RKGVTR 271
+ D A R +SHP+W+V+RW K+LG L+ N LR N+ R G
Sbjct: 74 DTPDGAAIR-----HSHPLWLVKRWWKWLGPNPTRALLAAGNRPTELVLRVNTLRTGPLG 128
Query: 272 ADLVMQLNLLKLQVPHE-LSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAV 330
D ++ VP E L E RV GL + G +EG +
Sbjct: 129 EDGAPAGGIV---VPGEPFDDALPEARRVTGGLDVLADPGW-REGHYVAMSRGSMRAARA 184
Query: 331 VDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIR 390
VDPQPG+ ++D CAAPGGKT +MA+ + G+G + AI+ + GR R L T + +V
Sbjct: 185 VDPQPGERVLDLCAAPGGKTTHMAALMGGEGTIVAIEKHGGRARALRRTCERVGAGNV-E 243
Query: 391 TIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDA 450
I D + + D+VLLDAPCSGLG L+ DLRW + D+ EL LQ LL+
Sbjct: 244 VISGDALEV-ELAAGSFDRVLLDAPCSGLGTLASHPDLRWRVQERDLPELGRLQGRLLEV 302
Query: 451 ASLLVKPGGVLVYSTCSIDPEENEERV 477
A VKPGG LVYS C+++P EER+
Sbjct: 303 AQRAVKPGGRLVYSVCTLNP--GEERL 327
>gi|295397805|ref|ZP_06807870.1| ribosomal RNA small subunit methyltransferase B [Aerococcus
viridans ATCC 11563]
gi|294973940|gb|EFG49702.1| ribosomal RNA small subunit methyltransferase B [Aerococcus
viridans ATCC 11563]
Length = 482
Score = 173 bits (438), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 123/392 (31%), Positives = 205/392 (52%), Gaps = 26/392 (6%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLI-CLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPP 168
D L T++V G+++ LD + + K S + LL+ + Y++ LD +P
Sbjct: 64 DRNLYTNLVYGSVQNYYTLDAFVRDFVAKPNKVKSWVWSLLI----VSAYQMYYLDNIPN 119
Query: 169 YAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYS 228
YAVVDE VR+ + NG+LR + + + + + R + A++
Sbjct: 120 YAVVDEAVRIVRKRGNQTLAKFANGVLRNFTRRYETMA-DFIQTKEDPREKLTLEASL-- 176
Query: 229 HPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLN-LLKLQ--- 284
PVW V + G +EA KL N P ++RAN++ D + + +L+ +
Sbjct: 177 PPVW-VDYFVDRFGLDEAEKLANSLNQTPFITVRANNKFNNLDNDKMTEYQEILEAEGFS 235
Query: 285 -VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCC 343
P LS +RV G N + L G +QDESA L V ++P+PG++++D C
Sbjct: 236 VAPSPLSPFA---LRVTKG--NPAHSSLFMNGEITIQDESALLAVEALNPKPGETVLDAC 290
Query: 344 AAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHAD----LRTF 399
AAPGGKT+ +A + G V A DI + +L ++ E QV + +H D L F
Sbjct: 291 AAPGGKTVQIAEAVGRTGHVIACDIAENKLPLIQENVDRMQVADHVEILHQDATALLDRF 350
Query: 400 ADNST--VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKP 457
+N + DK+L+DAPCSG+G+ ++ D ++++ L+D++ L +Q +++ A L+K
Sbjct: 351 GENGSEPTSFDKILVDAPCSGVGLFRRKPDTKYHKTLQDLDALHDIQVTIMNQALPLLKK 410
Query: 458 GGVLVYSTCSIDPEENEERVEAFLLRHPEFSI 489
GGV+ YSTC+I EENE+ V+A L +HP+ ++
Sbjct: 411 GGVITYSTCTITREENEDVVKAILDQHPDLTL 442
>gi|385812511|ref|YP_005848902.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
fermentum CECT 5716]
gi|299783408|gb|ADJ41406.1| Ribosomal RNA small subunit methyltransferase B [Lactobacillus
fermentum CECT 5716]
Length = 448
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 141/477 (29%), Positives = 238/477 (49%), Gaps = 62/477 (12%)
Query: 56 EVSPHRAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLV 115
+++ RA++ L +++ GA+++L + SG L D RLV
Sbjct: 7 QLTGARAIALATLDKVRTSGAYSNLQLNQALESGQ----------------LSGADRRLV 50
Query: 116 TDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDE 174
T +V GT++ +R LD+ + +K ++ LLL L ++ LD +P +A DE
Sbjct: 51 TALVYGTLQHQRTLDYWLSPFIAGKKVRPWVKTLLLMTL----FQYQYLDRVPNFAATDE 106
Query: 175 NVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMV 234
+ +AK PG V G+L ++ N + K+E D Q LA S P W+V
Sbjct: 107 AIEIAKRRGNPGVRRFVTGVLHAIL---RNGVADVEKIE--DPKQ--RLAIQASLPDWLV 159
Query: 235 RRWTKYLG--QEEAIKLMVWNNSDPSFSLRAN-SRKGVTRADLVMQLNLLKLQVPHELSL 291
G Q EA+ ++ N SLR N ++ V A +++ ++ + P E++
Sbjct: 160 DELVAQYGLAQTEALAKVI--NEPARISLRVNLAKATVEEAQALLRSAGVETK-PSEVA- 215
Query: 292 HLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTL 351
+ V G V++ K G+ +QDESA L V + + ++D CAAPGGKT+
Sbjct: 216 --QNGLVVTKG--AVLKTAAFKNGVVTIQDESAMLAVESMHLTGHERVLDACAAPGGKTV 271
Query: 352 YMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT----FADNSTVKC 407
+A L+ G VYA+DI++ ++ ++ + A+ V+ + D R FAD
Sbjct: 272 QIAEALT-DGEVYALDIHRHKVGLIEKNAQRMGVDDRVFARQLDARQVGQEFADQF---F 327
Query: 408 DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467
D++L+DAPCSG+G+L ++ ++R++++L D + L +Q +LD+ + VK GG++ YSTC+
Sbjct: 328 DQILVDAPCSGMGLLRRKPEIRYDKQLGDSQRLHQIQGAILDSVATKVKKGGIITYSTCT 387
Query: 468 IDPEENEERVEAFLLRHPEFSIDPAD--------------GLVPSDFVTKHGFFFSD 510
I +EN+E V FL HP F + L+PSD+ + GFF S+
Sbjct: 388 ILRQENDETVAEFLKHHPNFRLQKTTTARMLKDNRQAQTLTLLPSDYGSD-GFFISN 443
>gi|237742476|ref|ZP_04572957.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium sp. 4_1_13]
gi|294785012|ref|ZP_06750300.1| ribosomal RNA small subunit methyltransferase B [Fusobacterium sp.
3_1_27]
gi|229430124|gb|EEO40336.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium sp. 4_1_13]
gi|294486726|gb|EFG34088.1| ribosomal RNA small subunit methyltransferase B [Fusobacterium sp.
3_1_27]
Length = 435
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 122/428 (28%), Positives = 210/428 (49%), Gaps = 25/428 (5%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
F+T +++ ++ +T+I G IR +++LD++I ++ T + + +LRI Y+I
Sbjct: 28 FKTLNINSKEKAFITEIFYGVIRNKKFLDYII-----EKNTKEIKKEWIRNLLRISIYQI 82
Query: 162 VKLDMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQAR 221
+D VV E LAK +NG LR + KD+ L A +
Sbjct: 83 TFMDSDNKGVVWEATELAKKKYGVPISKFINGTLRNYLRNKDSELKSL--------ADEK 134
Query: 222 ALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLL 281
+YS P W K G E + + P S+R N K T + L
Sbjct: 135 NYEVLYSIPKWFCDMLEKQYGNENLKQAITSLKKIPYLSVRVNKLK-YTEKEFEEFLKEK 193
Query: 282 KLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVD 341
+Q+ ++ D + +GL +I + K G QD S+ L + P + ++D
Sbjct: 194 DIQIIKKI----DTVYYINSGL--IINSEEFKTGKIIAQDASSYLAAKNLGVMPNELVLD 247
Query: 342 CCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD 401
CAAPGGKT + + +G + AIDI++ +++++ K ++ +++ I D R +
Sbjct: 248 ICAAPGGKTAVLTENMENRGEIIAIDIHQHKIKLIETNMKKLGID-IVKAIVMDARN-VN 305
Query: 402 NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVL 461
K DK+L+D PCSG GV+ K+ ++ +++ E++EEL LQ E+L++A+ ++K GG L
Sbjct: 306 KQGRKFDKILVDVPCSGYGVIRKKPEILYSKNRENIEELAKLQLEILNSAADILKDGGEL 365
Query: 462 VYSTCSIDPEENEERVEAFLLRHPEFSIDPADGL--VPSDFVTKHGFFFSDPIKHSLDGA 519
+YSTC+I EEN +E FL EF ++ L V D+ K G F + + +D
Sbjct: 366 IYSTCTITDEENTNNIEKFLKEREEFKVEKLYILENVSGDY-DKLGGFCINYKEEIMDNF 424
Query: 520 FAARLVRA 527
+ +LV+
Sbjct: 425 YIIKLVKG 432
>gi|450072133|ref|ZP_21848420.1| putative RNA-binding Sun protein [Streptococcus mutans M2A]
gi|449211697|gb|EMC12090.1| putative RNA-binding Sun protein [Streptococcus mutans M2A]
Length = 437
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 126/420 (30%), Positives = 219/420 (52%), Gaps = 44/420 (10%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L D L+T++V GT+ + L+ + D + +E + +L + Y+I+ LD
Sbjct: 39 LSQADRSLLTELVYGTLTRKITLEWYLAHYIEDR---NKLETWIYYLLMLSLYQILYLDK 95
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P +A+V+E V LAK R GA LVN +LR+ + K P + R R T
Sbjct: 96 IPQHAIVNEAVDLAKSRNR-GAEKLVNAVLRQFLRQKR------PDITVIKRKNKRYSIT 148
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
YS PVW+V++ G++ AI ++ S +R+ + V D Q+ ++
Sbjct: 149 -YSVPVWLVKKMISQFGEDRAISIL------KSLLVRSKASIRVVNPD---QIEVIAKAT 198
Query: 286 PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAA 345
+ S+ L VK Q + L K+G +QDES+ LV + + ++++D C+A
Sbjct: 199 GAKKSV-LSPCGLVKASGQ-FFDSDLFKQGKITIQDESSQLVAPTLAIKGNETVLDACSA 256
Query: 346 PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT----FAD 401
PGGK +++AS L+ G + A+D+ +L+++ + A L + + I+ D R FA
Sbjct: 257 PGGKAVHIASYLTT-GQIIALDLYDHKLKLIKDNADLLKAANYIKPQKLDARKVHKYFAK 315
Query: 402 NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVL 461
++ DK+L+DAPCSG+G++ ++ D+++N+ +D L+ +Q E+LD+ +K GG++
Sbjct: 316 DT---FDKILVDAPCSGIGLIRRKPDIKYNKDSKDFTSLQKIQLEILDSVCQTIKKGGII 372
Query: 462 VYSTCSIDPEENEERVEAFLLRHPEFS------------IDPADGLVPSDFVTKHGFFFS 509
YSTC+I EEN+ ++ FL +HP F +D + P ++T GFF S
Sbjct: 373 TYSTCTIFAEENQMVLKQFLEQHPNFEQVKLNHKKKDIVVDGCLLITPEQYLT-DGFFIS 431
>gi|306829015|ref|ZP_07462206.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
mitis ATCC 6249]
gi|304428820|gb|EFM31909.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
mitis ATCC 6249]
Length = 437
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 132/415 (31%), Positives = 211/415 (50%), Gaps = 42/415 (10%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPY 169
D LVT+IV GT+ + L+ + D ++ L +L + Y++ LD +P +
Sbjct: 42 DKGLVTEIVYGTVARKLTLEWYLSHFIQDR---DKLDNWLYVLLLMSAYQVRFLDKVPDH 98
Query: 170 AVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSH 229
AVV+E V +AK A + G+ LVN +LR++ L++ P E R R + YS
Sbjct: 99 AVVNEAVEIAK-ARKKGSEKLVNAVLRRI--LREG----WPDFETIKRKNKRD-SIAYSL 150
Query: 230 PVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHEL 289
PVW+V + + G+E A + SL ++ + DL + + + ++
Sbjct: 151 PVWLVSKLKEEYGEERAQAIFE--------SLLVRNKASIRVTDLSRKEEIKAVLEANDS 202
Query: 290 SLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGK 349
L ++ + L EG +QDES+ LV +D Q + ++D CAAPGGK
Sbjct: 203 PLAASGLVKEQGHFAG---HDLFSEGAITIQDESSQLVAPTLDLQGDEQVLDACAAPGGK 259
Query: 350 TLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT----FADNSTV 405
T++MAS L+ G V A+D+ +L ++ E A+ V ++T D R F +S
Sbjct: 260 TVHMASYLTS-GKVTALDLYDHKLDLIQENAQRLGVADRVQTQKLDARKVHEFFEKDS-- 316
Query: 406 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465
DK+L+DAPCSG+G+L ++ D+++N+ D L+ +Q E+L + ++ GG++ YST
Sbjct: 317 -FDKILVDAPCSGIGLLRRKPDIKYNKETADFTSLQEIQLEILGSVCQTLRKGGIITYST 375
Query: 466 CSIDPEENEERVEAFLLRHPEFS--------IDP-ADG--LVPSDFVTKHGFFFS 509
C+I EEN + VEAFL HPEF ID DG L+ + GFF S
Sbjct: 376 CTIVSEENFQVVEAFLESHPEFEQVKLEHECIDILKDGCILITPELYGSDGFFIS 430
>gi|90581174|ref|ZP_01236973.1| Putative Sun protein [Photobacterium angustum S14]
gi|90437695|gb|EAS62887.1| Putative Sun protein [Vibrio angustum S14]
Length = 426
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 128/425 (30%), Positives = 211/425 (49%), Gaps = 31/425 (7%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
+D+ +RD L+ +I G +RW L+ + L +K + + ++ +G Y++ +
Sbjct: 30 QDIRERDHALLQEICYGVLRWLPRLESITQALM--DKPLKGKQRVFHHLILVGLYQLGYM 87
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P +A V E V K +P L+N ILR + L + + A
Sbjct: 88 RIPAHAAVAETVNATKTLKKPQLRGLINAILRNYQ--RQQEELDTKAISHD--------A 137
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQ 284
Y HP W+++ K E+ + NN+ LR N + A + L
Sbjct: 138 GKYGHPSWLLKL-LKESYPEQFADICEANNTKAPMWLRVNRQHNTRDAYRAL---LDAED 193
Query: 285 VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 344
+ EL + +R+ + +V + +G +VQD +A L V + P+ G+ I+DCCA
Sbjct: 194 IATELHPQAADALRLVSPC-DVTKLPGFSDGWVSVQDAAAQLAVDYLQPKAGELILDCCA 252
Query: 345 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-- 402
APGGKT ++ + +V AID ++ RL+ ++E L ++N + AD R + +
Sbjct: 253 APGGKTAHIMEHVPSTKVV-AIDCDENRLKRVHEN--LARLNLDATVLCADAR-YPEQWW 308
Query: 403 STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLV 462
K D++LLDAPCS GV+ + D++W RR ED+ L LQ E+ DA L +KPGG LV
Sbjct: 309 QGDKFDRILLDAPCSATGVIRRHPDIKWLRRGEDIAALATLQAEIFDAMWLQLKPGGTLV 368
Query: 463 YSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAA 522
Y+TCSI P+EN ++V+AFL R + ++ +D P + P + S+DG + A
Sbjct: 369 YATCSITPQENCDQVKAFLARTSDATLIGSDPAKPGRQIL--------PGEESMDGFYYA 420
Query: 523 RLVRA 527
L +A
Sbjct: 421 VLTKA 425
>gi|387887661|ref|YP_006317959.1| 16S rRNA m5C967 methyltransferase [Escherichia blattae DSM 4481]
gi|414595865|ref|ZP_11445472.1| ribosomal RNA small subunit methyltransferase B [Escherichia
blattae NBRC 105725]
gi|386922494|gb|AFJ45448.1| 16S rRNA m5C967 methyltransferase [Escherichia blattae DSM 4481]
gi|403193153|dbj|GAB83124.1| ribosomal RNA small subunit methyltransferase B [Escherichia
blattae NBRC 105725]
Length = 429
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 129/418 (30%), Positives = 210/418 (50%), Gaps = 32/418 (7%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
+ + D+D L+ ++ G +R L+ L+ L + + + + ++ +G Y+++
Sbjct: 34 QKVSDKDKALLQELCFGVLRTLPRLEWLVGQLM--SRKMTGKQRTVHYLILVGIYQLLYT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+PP+A + E V A RP ++NG+LR+ +D L D + R L
Sbjct: 92 RIPPHAALAETVEGAVAIKRPAFKGVINGVLRQFQRQQDA------LLAEADSQEIRFL- 144
Query: 225 TIYSHPVWMVRRW-TKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKL 283
HP W+++R Y Q EA+ + NN P LR N + A L + + +
Sbjct: 145 ----HPGWLLKRLRAAYPTQWEAV--VEANNQRPPMWLRVNRQHHTRDAWLALLNDAGHV 198
Query: 284 QVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCC 343
PH + +R+++ L V Q +G VQD SA V ++DPQ G+ I+D C
Sbjct: 199 AYPHP---DYSDALRLESPL-PVHQLPGFDQGWVTVQDASAQGCVDLLDPQNGEEILDLC 254
Query: 344 AAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS 403
AAPGGKT ++ G V A+D++ RLR ++E Q+ + ++ D R
Sbjct: 255 AAPGGKTTHILEAAPGAN-VLAVDVDPQRLRRVSENLARLQMQAEVKC--GDGRYPQQWC 311
Query: 404 TVKC-DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLV 462
+ D++LLDAPCS GV+ + D++W RR D+ +L LQ E+LDA +K GG LV
Sbjct: 312 GDRLFDRILLDAPCSATGVIRRHPDIKWLRRDTDIADLAQLQGEILDAIWPRLKTGGTLV 371
Query: 463 YSTCSIDPEENEERVEAFLLRHPEFSI-------DPADGLVPSDFVTKHGFFFSDPIK 513
Y+TCS+ P+EN +++ AFL RHPE ++ P +P+ GFF++ IK
Sbjct: 372 YATCSVLPDENSQQIAAFLARHPEATLVETGTPEQPGRQNLPA-AEEGDGFFYAKLIK 428
>gi|310659156|ref|YP_003936877.1| RsmB [[Clostridium] sticklandii]
gi|308825934|emb|CBH21972.1| RsmB [[Clostridium] sticklandii]
Length = 444
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 123/427 (28%), Positives = 224/427 (52%), Gaps = 33/427 (7%)
Query: 101 GFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYE 160
F +D+R+ VT++V G + YLD+ I + S + +L +GFY+
Sbjct: 40 AFNKNTIDNREKGFVTELVYGALSRLIYLDYQIEQFL--DMRASKLSKQAKTVLEMGFYQ 97
Query: 161 IVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRA- 218
+ +D + +A VDE+V+L K AG ++N ++RK V K E D+
Sbjct: 98 LEFMDSVSDFASVDESVKLIKKVDNRSAG-IINAVMRKRV--------KEGKAEYTDKIS 148
Query: 219 -QARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQ 277
+A++L+ +S ++ RR+ K +E +L+ PS +R N + T A+L
Sbjct: 149 DKAKSLSIEFSISEYIARRFLKIYKEEFTRQLLSSMLEKPSLFIRLNKLRS-TEAELFE- 206
Query: 278 LNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQ 337
NL + + + + +D + +G++N+ L +G +QD S+ L V ++P PG
Sbjct: 207 -NLEQQGIYSKKNDIIDSAYEI-SGMKNIGSNPLFVKGGFVIQDLSSMLAVKALNPLPGD 264
Query: 338 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR 397
+++D C+APGGK+ Y+A + +G + ++DI++ ++++L + A V+ +I D
Sbjct: 265 TVLDICSAPGGKSFYIADLMENKGQLDSMDISEHKIQMLKKRAVELGVD-IINARVMDAT 323
Query: 398 TFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKP 457
F + T + DK+L+DAPCSG G++ ++ ++R+ + ED+ +L +Q ++L AS +K
Sbjct: 324 VFNEEMTNRYDKILVDAPCSGFGIIRRKPEIRY-KSYEDVNQLPEIQYQILSNASKYLKD 382
Query: 458 GGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLD 517
G LVYSTC+++ +EN E V+ FL + EF ++ P + P H+ D
Sbjct: 383 TGSLVYSTCTLEKKENIEIVDKFLENNKEFYLEEE----PKELY---------PHIHNTD 429
Query: 518 GAFAARL 524
G F A+
Sbjct: 430 GFFIAKF 436
>gi|421847960|ref|ZP_16281086.1| 16S rRNA methyltransferase B [Citrobacter freundii ATCC 8090 = MTCC
1658]
gi|411770645|gb|EKS54407.1| 16S rRNA methyltransferase B [Citrobacter freundii ATCC 8090 = MTCC
1658]
Length = 429
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 126/382 (32%), Positives = 197/382 (51%), Gaps = 28/382 (7%)
Query: 109 DRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPP 168
D+D L+ ++ G +R L+ +I L E+ + + + ++ +GFY+++ +PP
Sbjct: 38 DKDKALLQELCFGVLRTLSQLEWMIQQLM--ERPMTGKQRTVHYLIMVGFYQLLHTRIPP 95
Query: 169 YAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYS 228
+A + E V A V RP L+NG+LR+ +D L + +D +
Sbjct: 96 HAALAETVEGAVVIKRPQLKGLINGVLRQFQRRQDEL---LAEFAQSD--------LRFL 144
Query: 229 HPVWMVRRW-TKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRA--DLVMQLNLLKLQV 285
HP W+V+R Y Q EAI + NN P LR N A DL+ + L
Sbjct: 145 HPSWLVKRIKAAYPQQWEAI--LEANNQRPPMWLRVNRNHHTRDAWLDLLSEAGLTGF-- 200
Query: 286 PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAA 345
PH + +R++T G EG VQD SA V + P+ G+ I+D C A
Sbjct: 201 PHP---DYPDAVRLETPAPVHALPGF-DEGWVTVQDASAQGCVTYLLPENGEQILDLCCA 256
Query: 346 PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-NST 404
PGGKT ++ ++ Q V A+D+++ RL + + K +N+ ++ D R
Sbjct: 257 PGGKTTHILE-VAPQANVMAVDVDEKRLSRVYDNLKRLGMNATVK--QGDGRYPQQWCGE 313
Query: 405 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464
+ D++LLDAPCS GV+ + D++W RR D+ EL LQ E+L+A L +KPGG LVY+
Sbjct: 314 QQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQAEILNATWLHLKPGGTLVYA 373
Query: 465 TCSIDPEENEERVEAFLLRHPE 486
TCSI PEEN++++ AFL R P+
Sbjct: 374 TCSILPEENQQQITAFLARTPD 395
>gi|398800925|ref|ZP_10560185.1| ribosomal RNA small subunit methyltransferase RsmB [Pantoea sp.
GM01]
gi|398093742|gb|EJL84117.1| ribosomal RNA small subunit methyltransferase RsmB [Pantoea sp.
GM01]
Length = 428
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 134/427 (31%), Positives = 213/427 (49%), Gaps = 38/427 (8%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
K L D+D L+ ++ G +R L+ LI L E+T + + +L +L +G Y+++
Sbjct: 34 KALSDKDGALLQELCFGVMRTLPQLEALIGKLM--ERTLTGKQRVLHYLLMVGLYQLLYT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P +A + E V A+V R L+NG+LR+ L+ +L +G R
Sbjct: 92 RVPAHAALAETVAGAEVLKRANLKGLLNGVLRQF--LRQQEALLAEVDQGTQR------- 142
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQ 284
Y HP W+++R + E+ ++ NN P LR N + A L + K
Sbjct: 143 --YWHPGWLLKR-LQAAWPEQWQHIVEANNQRPPMWLRVNRQHHSRDAWLALLQAADKQA 199
Query: 285 VPHEL--SLHLDEFIRVK--TGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIV 340
P + +L LD V G ++ G VQD SA +++PQ G+SI+
Sbjct: 200 FPGDAPDALRLDSPAPVSHLPGFEH---------GWVTVQDLSAQRCALLLEPQNGESIL 250
Query: 341 DCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 400
D CAAPGGKT ++ ++ Q V A+DI++ RL ++E + + + +R D RT A
Sbjct: 251 DLCAAPGGKTTHILE-IAPQAKVLAVDIDQQRLLRVHENLQRLDMQAEVR--QGDGRTPA 307
Query: 401 D-NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGG 459
+ ++ D++LLDAPCS GV+ + D++W RR D+ EL ILQ E+L+A +K GG
Sbjct: 308 EWCGEMQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAILQREILEAVWPHLKSGG 367
Query: 460 VLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGA 519
++Y+TCSI PEEN +++ FL H D +P F P DG
Sbjct: 368 TMIYATCSILPEENHQQISTFLAAHS----DAVAETLPQGQANGWQVF---PTVDGGDGF 420
Query: 520 FAARLVR 526
F A+L++
Sbjct: 421 FYAKLMK 427
>gi|50914729|ref|YP_060701.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus pyogenes
MGAS10394]
gi|139473325|ref|YP_001128040.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus pyogenes str.
Manfredo]
gi|50903803|gb|AAT87518.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus pyogenes
MGAS10394]
gi|134271571|emb|CAM29796.1| putative ribosomal RNA small subunit methyltransferase
[Streptococcus pyogenes str. Manfredo]
Length = 440
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 131/432 (30%), Positives = 218/432 (50%), Gaps = 41/432 (9%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
K L +D L+T+IV GT+ + L+ L H K ++ + +L + Y++ L
Sbjct: 38 KALSAKDRALLTEIVYGTVSRKISLE---WYLAHYVKDRDKLDKWVYYLLMLSLYQLTYL 94
Query: 165 D-MPPYAVVDENVRLAKV-ALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARA 222
D +P +A+V++ V +AK + GA VN ILR+ + PLP +E R + +
Sbjct: 95 DKLPAHAIVNDAVGIAKNRGNKKGAEKFVNAILRQFT------NHPLPDMETIKR-RNKY 147
Query: 223 LATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLK 282
+ YS PVW+V++ G + ++ +M S +R+ + VT + LK
Sbjct: 148 YSVKYSLPVWLVKKLEDQFGSDRSVAIM------ESLFVRSKASIRVT--------DPLK 193
Query: 283 LQVPHELSLHLDEFIRVKTGLQ----NVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQS 338
L+ E +L + + TGL + + G +QDES+ LV ++
Sbjct: 194 LEEVAE-ALDAERSLLSATGLTKASGHFAASDYFTNGDITIQDESSQLVAPTLNIDGDDI 252
Query: 339 IVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT 398
I+D C+APGGKT ++AS L G V A+D+ +L ++ E A V I T D R
Sbjct: 253 ILDACSAPGGKTSHIASYLK-TGKVIALDLYDHKLELVKENANRLGVADNIETRKLDARE 311
Query: 399 ----FADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLL 454
F +S DK+L+DAPCSG+G++ ++ D+++N+ +D L+ +Q E+L +
Sbjct: 312 VHRHFEKDS---FDKILVDAPCSGIGLIRRKPDIKYNKESQDFNALQAIQLEILSSVCQT 368
Query: 455 VKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKH 514
++ GG++ YSTC+I EEN + +EAFL HP F + +D V K G+ P ++
Sbjct: 369 LRKGGIITYSTCTIFDEENRQVIEAFLQSHPNFEQVKLNH-TQADIV-KDGYLIITPEQY 426
Query: 515 SLDGAFAARLVR 526
DG F ++ R
Sbjct: 427 QTDGFFIGQVRR 438
>gi|366161349|ref|ZP_09461211.1| 16S rRNA methyltransferase B [Escherichia sp. TW09308]
gi|432373858|ref|ZP_19616889.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE11]
gi|430893280|gb|ELC15604.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE11]
Length = 429
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 135/419 (32%), Positives = 217/419 (51%), Gaps = 34/419 (8%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
+ + D+D L+ ++ G +R LD LI L + + + + ++ +G Y+++
Sbjct: 34 QKVSDKDKALLQELCFGVLRTLSQLDWLINKLM--ARPMTGKQRTVHYLIMVGLYQLLYT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+PP+A + E V A RP L+NG+LR+ +D L + +D AR
Sbjct: 92 RIPPHAALAETVEGAVAIKRPQLKGLINGVLRQFQRQQDEL---LAEFNASD---AR--- 142
Query: 225 TIYSHPVWMVRRWTK-YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKL 283
Y HP W+++R K Y Q ++I + NN P LR N R +R + L +
Sbjct: 143 --YLHPSWLLKRLQKAYPEQWQSI--VEANNQRPPMWLRVN-RTHHSRDSWIALLEEAGM 197
Query: 284 Q-VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 342
PH +++LD +R++T G +EG VQD SA V +DPQ G++I+D
Sbjct: 198 NGFPH--AVYLDA-VRLETPTPVHALPGF-EEGWITVQDASAQGCVTYLDPQNGENILDL 253
Query: 343 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD- 401
CAAPGGKT ++ ++ + V A+DI++ RL + + K + + ++ D R A
Sbjct: 254 CAAPGGKTTHILE-VAPEAQVLAVDIDEQRLSRVYDNLKRLGMKATVK--QGDGRYPAQW 310
Query: 402 NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVL 461
+ + D++LLDAPCS GV+ + D++W RR D+ EL LQ E+LDA +K GG L
Sbjct: 311 CGSQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQAEILDAVWPHLKSGGTL 370
Query: 462 VYSTCSIDPEENEERVEAFLLRHPEFSI-------DPADGLVPSDFVTKHGFFFSDPIK 513
VY+TCS+ PEEN ++++AFL R + + P +P D GFF++ IK
Sbjct: 371 VYATCSVLPEENSQQIKAFLQRTEDAMLCETGTPEQPGKQNLP-DAEEGDGFFYAKLIK 428
>gi|51243976|ref|YP_063860.1| SUN protein (Fmu protein) [Desulfotalea psychrophila LSv54]
gi|50875013|emb|CAG34853.1| related to SUN protein (FMU protein) [Desulfotalea psychrophila
LSv54]
Length = 454
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 139/442 (31%), Positives = 227/442 (51%), Gaps = 41/442 (9%)
Query: 103 RTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIV 162
+ K L+ R+ L ++V G +R R+YLD L+ L ++P + Q L +G Y++
Sbjct: 32 QQKQLNPRERSLAMNMVFGVLRKRQYLDILLRKL--STVRLKKLDPFVHQALTVGLYQLF 89
Query: 163 KLD-MPPYAVVDENVRLAKVA-LRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
LD +P A+V+E V K A + VNGILR K+ L + Q
Sbjct: 90 FLDSIPESAIVNEAVNSCKTAKVHKRLHGFVNGILRNATRQKE-------ALANGMKEQE 142
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRAD----LVM 276
+ I++ P + +RW + G E+A + N +P +LR NS K T D L+
Sbjct: 143 QE---IHTTPSGLFKRWQERFGLEKARYICEINGEEPPLTLRVNSTK--TSIDDFEALLT 197
Query: 277 QLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDP-QP 335
+ + + P SL ++++ GL I K+GL VQD +A L ++ P +
Sbjct: 198 REGITGTRGPAPESLIIEDY----QGLIGDIPG--YKDGLFQVQDSAAQLASLLLLPIKS 251
Query: 336 GQSIVDCCAAPGGKTLYMASCLSGQGL-VYAIDIN-KGRLRILNETAKLHQVNSVIRTIH 393
G +D CA GGKT ++ + + + V A++ + K + + + +L + V +H
Sbjct: 252 GGHYLDACAGLGGKTSHIIQLGADKEIKVIAVEPDAKRKEKFITNIERLFTHHEV--ELH 309
Query: 394 -ADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAAS 452
L+ F ++T D +L+DAPCSG GV+ ++ D+RWNR+ ED + +I+Q E+L A+
Sbjct: 310 PTSLQEFKASNTQAFDGILVDAPCSGTGVIRRQPDIRWNRKEEDFLQKQIIQLEILSLAA 369
Query: 453 LLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKH-------- 504
++ P G+LVY+TCS++ EENE+ ++ FLL P+F + +P + V +H
Sbjct: 370 EMLAPTGILVYATCSLEIEENEDLIKKFLLLFPDFYLTDCQNYLPEE-VGEHIRPAKDGD 428
Query: 505 GFFFSDPIKHSLDGAFAARLVR 526
G FF+ LDG FAARL R
Sbjct: 429 GSFFAPLPSKRLDGFFAARLAR 450
>gi|88194923|ref|YP_499723.1| sun protein [Staphylococcus aureus subsp. aureus NCTC 8325]
gi|379014408|ref|YP_005290644.1| 16S rRNA methyltransferase B [Staphylococcus aureus subsp. aureus
VC40]
gi|417650103|ref|ZP_12299880.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21189]
gi|440734663|ref|ZP_20914275.1| sun protein [Staphylococcus aureus subsp. aureus DSM 20231]
gi|87202481|gb|ABD30291.1| sun protein [Staphylococcus aureus subsp. aureus NCTC 8325]
gi|329724759|gb|EGG61264.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21189]
gi|374363105|gb|AEZ37210.1| 16S rRNA methyltransferase B [Staphylococcus aureus subsp. aureus
VC40]
gi|436431691|gb|ELP29044.1| sun protein [Staphylococcus aureus subsp. aureus DSM 20231]
Length = 435
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 130/428 (30%), Positives = 215/428 (50%), Gaps = 58/428 (13%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTF--SSMEPLLLQILRIGFYEIVK 163
+L+ D L T+IV GT++ + LD + K F + ++ + Q+L + Y+ V
Sbjct: 35 ELNAMDKALFTEIVYGTVKRKYTLDFYL-------KPFVKTKIKAWVRQLLWMSIYQYVY 87
Query: 164 LD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVL--LKDNNSLPLPKLEGNDRAQA 220
LD +P +A+++E V +AK GN+VNGILR ++ L D N + PK
Sbjct: 88 LDKVPNHAIINEAVEIAKERGGYHNGNVVNGILRTMMRSDLPDFNEIADPK--------- 138
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADL-----V 275
+ +A YS P W++ W + G EE K++ S ++RAN +TRA L
Sbjct: 139 KRMAIEYSMPKWIIDHWATHYGLEETEKILQSFLETTSTTVRAN----LTRASLDDIIEK 194
Query: 276 MQLNLLKLQVPHEL--SLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDP 333
+Q ++ H+L LH+ G Q +I + K+G ++QD+S+ V +++
Sbjct: 195 LQDEGYDVEKDHDLPYCLHI--------GGQPIIHSRSFKDGFVSIQDKSSMFVAHIMNV 246
Query: 334 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILN-ETAKLHQVNSVIRTI 392
++D C+APGGK ++A L +G V A DI+ ++ ++N KL N I+
Sbjct: 247 DRHDHVLDACSAPGGKACHIAEVLMPEGQVDASDIHDHKIDLINFNIKKLRLTN--IKAF 304
Query: 393 HADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAAS 452
D D + DK+L+DAPCSGLGV+ + ++++ + + +E L LQ E+L+
Sbjct: 305 QHDATKPYDKT---YDKILVDAPCSGLGVMRHKPEIKYTQSKQHIESLVELQLEILENVK 361
Query: 453 LLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADG-----------LVPSDFV 501
VK GG ++YSTC+I+ ENE + FL + F +P ++P DF
Sbjct: 362 NNVKIGGEIIYSTCTIEQLENENVIYTFLKNNKNFEFEPFQHPITGELVKTLQIMPQDF- 420
Query: 502 TKHGFFFS 509
GFF +
Sbjct: 421 NSDGFFIT 428
>gi|378765423|ref|YP_005193882.1| ribosomal RNA small subunit methyltransferase B [Pantoea ananatis
LMG 5342]
gi|365184895|emb|CCF07845.1| ribosomal RNA small subunit methyltransferase B [Pantoea ananatis
LMG 5342]
Length = 433
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 131/436 (30%), Positives = 212/436 (48%), Gaps = 64/436 (14%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
K L D+D LV +I G +R L+ LI L E+ + + L ++ +G Y+++
Sbjct: 34 KKLSDKDAALVQEICFGVLRTLPQLEALIGKLM--ERPLTGKQRTLHFLIMVGLYQLLYT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P +A + E V A+V R L+NG+LR+ R Q LA
Sbjct: 92 RVPAHAALAETVAGAEVLKRANLKGLINGVLRQF-----------------QRQQEALLA 134
Query: 225 TI------YSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQL 278
+I + HP W++ R + E+ +++ NN P LR N R+ +R + +L
Sbjct: 135 SIQDGPQRHLHPGWLLNR-LQQAWPEQWQQIVEANNQRPPMWLRVN-RQHHSRDSWLARL 192
Query: 279 NL------LKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVD 332
+ VP L L + + G + +G VQD SA +++
Sbjct: 193 TAEEKSAAVAQDVPEALRLTAPAPVTLLPGFE---------QGWFTVQDLSAQRCALLLE 243
Query: 333 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNE-------TAKLHQV 385
P+ G+ I+D CAAPGGKT ++ ++ Q V A+D++ RL+ +NE TA++ Q
Sbjct: 244 PKNGEQILDLCAAPGGKTTHILE-IAPQAQVLAVDVDAQRLKRVNENLTRLGMTAEVKQG 302
Query: 386 NSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQD 445
+ D R F D++LLDAPCS GV+ + D++W RR D+ EL LQ
Sbjct: 303 DGRTPQQWCDQRQF--------DRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAALQR 354
Query: 446 ELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPE-----FSIDPADGL-VPSD 499
E+LDA L+KPGG ++Y+TCS+ P+EN+ ++ F+ RH + S P +G V +
Sbjct: 355 EILDATWPLLKPGGTMIYATCSVLPDENQRQISEFIERHADAEAVSLSGAPLNGWQVFPE 414
Query: 500 FVTKHGFFFSDPIKHS 515
GFF++ +K +
Sbjct: 415 AEGGDGFFYAKLVKRT 430
>gi|319937497|ref|ZP_08011902.1| SUN protein [Coprobacillus sp. 29_1]
gi|319807337|gb|EFW03946.1| SUN protein [Coprobacillus sp. 29_1]
Length = 416
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 122/408 (29%), Positives = 216/408 (52%), Gaps = 26/408 (6%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
F+ + + +T +V GT++ YL++L L H + + E +LL + Y+
Sbjct: 28 FQNQQISREQKDFITRVVYGTVQNMLYLEYL--LEPHLKTRVKAYEKMLL---LMSLYQH 82
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
+D +P YA+V+E VRLAK +N +L + SL E +D +
Sbjct: 83 EFMDSIPDYAIVNEAVRLAKKKKGTKTAQFINAVLNHA--FHQHRSLD----ELDDEKER 136
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
++ T SHP+W+V+ +K G+EE K+ +N P S R N+ K T+ + +L
Sbjct: 137 LSIET--SHPLWLVKMLSKQYGEEETRKICYADNEVPYKSARVNTLK--TKKE-----SL 187
Query: 281 LKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIV 340
LK + E L D + + G N+ +EGL +QDES+ +V +++PQP + I+
Sbjct: 188 LKDDMWSEGQLSPD-CLYYQRG--NIANTKYYQEGLVTIQDESSQMVARLLNPQPHEYIL 244
Query: 341 DCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 400
D C APGGKT ++A+ + QG + A D+ + ++ ++ E + V+ V +
Sbjct: 245 DMCCAPGGKTSHLAALMKNQGRIDAYDLYEHKIPLVKEQMQRLGVDIVHVQAYDSTHLIE 304
Query: 401 DNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGV 460
D++LLDAPCSGLGVL+++ +++++ + M+E+ +Q +LL+ A L+K GG
Sbjct: 305 LYPADTFDRILLDAPCSGLGVLARKPEIKYHDS-DSMDEIIQIQQKLLENAYFLLKNGGR 363
Query: 461 LVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFF 508
+VYSTC+I+ +EN +++E F+ H + ++P + + GF+
Sbjct: 364 IVYSTCTINKKENGKQIETFIKNHSDMKKIEETTILPYQYHSD-GFYM 410
>gi|19703658|ref|NP_603220.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium nucleatum
subsp. nucleatum ATCC 25586]
gi|19713776|gb|AAL94519.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium nucleatum
subsp. nucleatum ATCC 25586]
Length = 435
Score = 172 bits (435), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 115/389 (29%), Positives = 197/389 (50%), Gaps = 22/389 (5%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
F+T +++ ++ +T+I G IR +++LD++I ++ T + + +LRI Y+I
Sbjct: 28 FKTLNVNSKEKAFITEIFYGVIRNKKFLDYII-----EKNTKEIKKEWIRNLLRISIYQI 82
Query: 162 VKLDMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQAR 221
+D VV E LAK +NG LR + KD L L KL +
Sbjct: 83 TFMDSDDKGVVWEGTELAKKKYGIPISKFINGTLRNYLRNKD---LELKKL-----YDEK 134
Query: 222 ALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLL 281
+YS P W K G + + P S+R N K + + L
Sbjct: 135 NYEVLYSIPKWFYDILEKQYGDNNLKQAITSLKKIPYLSVRVNKLK-YSEEEFEEFLKER 193
Query: 282 KLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVD 341
+Q+ ++ D V +GL +I + K G QD S+ L +D P + ++D
Sbjct: 194 DIQIIKKI----DTVYYVNSGL--IINSEEFKTGKIIAQDASSYLAAKNLDAMPNELVLD 247
Query: 342 CCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD 401
CAAPGGKT +A + G + AIDI++ ++++++ K +++ +++ I D R +
Sbjct: 248 ICAAPGGKTAVLAENMKNMGEIIAIDIHQHKIKLIDTNMKKLRID-IVKAIVMDARN-VN 305
Query: 402 NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVL 461
K DK+L+D PCSG GV+ K+ ++ +++ E++EEL LQ E+L++A+ ++K GG L
Sbjct: 306 KQGRKFDKILVDVPCSGYGVIRKKPEILYSKNRENVEELAKLQLEILNSAADILKDGGEL 365
Query: 462 VYSTCSIDPEENEERVEAFLLRHPEFSID 490
+YSTC+I EEN ++ FL EF ++
Sbjct: 366 IYSTCTITDEENTNNIKKFLEERKEFKVE 394
>gi|398792545|ref|ZP_10553139.1| ribosomal RNA small subunit methyltransferase RsmB [Pantoea sp.
YR343]
gi|398212923|gb|EJM99524.1| ribosomal RNA small subunit methyltransferase RsmB [Pantoea sp.
YR343]
Length = 428
Score = 172 bits (435), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 131/423 (30%), Positives = 215/423 (50%), Gaps = 30/423 (7%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
K L D+D L+ ++ G +R L+ LI L E+T + + +L +L +G Y+++
Sbjct: 34 KTLSDKDSALLQELCFGVMRTLPQLEALIGKLM--ERTLTGKQRVLHYLLMVGLYQLLYT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P +A + E V A+V R L+NG+LR+ L+ +L +G+ R
Sbjct: 92 RVPAHAALAETVAGAEVLKRTALKGLLNGVLRQF--LRQQEALLAEVDQGSQR------- 142
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQ 284
Y HP W+++R + E+ +++ NN P LR N + A L + K+
Sbjct: 143 --YWHPGWLLKR-LQAAWPEQWQQIVEANNQRPPMWLRVNRQHHSRDAWLALLQAEEKVA 199
Query: 285 VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 344
P + + +R+++ V Q +G VQD SA +++P+ G+SI+D CA
Sbjct: 200 FPGDAQ----DALRLESP-APVSQLPGFDQGWVTVQDLSAQRCALLLEPKDGESILDLCA 254
Query: 345 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-NS 403
APGGKT ++ ++ Q V A+D++ RL ++E + + + +R D RT AD
Sbjct: 255 APGGKTTHILE-IAPQAKVLAVDVDPQRLLRVHENLQRLGMQAEVR--QGDGRTPADWCG 311
Query: 404 TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463
++ D++LLDAPCS GV+ + D++W RR D+ EL LQ E+L+A +K GG ++Y
Sbjct: 312 DMQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELANLQREILEAVWPRLKSGGTMIY 371
Query: 464 STCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAAR 523
+TCSI PEEN ++ AFL H D +P F P DG F A+
Sbjct: 372 ATCSILPEENHNQISAFLAAHS----DAVAETLPQGQTNGWQVF---PTIDGGDGFFYAK 424
Query: 524 LVR 526
L++
Sbjct: 425 LMK 427
>gi|421893071|ref|ZP_16323641.1| Ribosomal RNA small subunit methyltransferase B [Streptococcus
pyogenes NS88.2]
gi|379981173|emb|CCG27363.1| Ribosomal RNA small subunit methyltransferase B [Streptococcus
pyogenes NS88.2]
Length = 440
Score = 172 bits (435), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 131/433 (30%), Positives = 218/433 (50%), Gaps = 41/433 (9%)
Query: 104 TKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVK 163
K L +D L+T+IV GT+ + L+ L H K ++ + +L + Y+++
Sbjct: 37 NKALSAKDRALLTEIVYGTVSRKISLE---WYLAHYVKDRDKLDKWVYYLLMLSLYQLIY 93
Query: 164 LD-MPPYAVVDENVRLAKV-ALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQAR 221
LD +P +A+V++ V +AK + GA VN ILR+ S PLP +E R + +
Sbjct: 94 LDKLPAHAIVNDAVGIAKNRGNKKGAEKFVNAILRQFT------SHPLPDMETIKR-RNK 146
Query: 222 ALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLL 281
+ YS PVW+V++ G + ++ +M S +R+ + VT + L
Sbjct: 147 YYSVKYSLPVWLVKKLEDQFGSDRSVAIM------ESLFVRSKASIRVT--------DPL 192
Query: 282 KLQVPHELSLHLDEFIRVKTGLQ----NVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQ 337
KL+ E +L + + TGL + + G +QDES+ LV ++
Sbjct: 193 KLEEVAE-ALDAERSLLSATGLTKASGHFAASDYFTNGDITIQDESSQLVAPTLNIDGDD 251
Query: 338 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR 397
I+D C+APGGKT ++A L G V A+D+ +L ++ E A V I T D R
Sbjct: 252 IILDACSAPGGKTSHIAFYLK-TGKVIALDLYDHKLELVKENANRLGVADNIETRKLDAR 310
Query: 398 T----FADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASL 453
F +S DK+L+DAPCSG+G++ ++ D+++N+ +D L+ +Q E+L +
Sbjct: 311 EVHRHFEKDS---FDKILVDAPCSGIGLIRRKPDIKYNKESQDFNALQAIQLEILSSVCQ 367
Query: 454 LVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIK 513
++ GG++ YSTC+I EEN + +EAFL HP F + +D V K G+ P +
Sbjct: 368 TLRKGGIITYSTCTIFDEENRQVIEAFLQSHPNFEQVKLNH-TQADIV-KDGYLIITPEQ 425
Query: 514 HSLDGAFAARLVR 526
+ DG F ++ R
Sbjct: 426 YQTDGFFIGQVRR 438
>gi|170016869|ref|YP_001727788.1| putative rRNA methylase [Leuconostoc citreum KM20]
gi|169803726|gb|ACA82344.1| Putative rRNA methylase [Leuconostoc citreum KM20]
Length = 450
Score = 172 bits (435), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 124/425 (29%), Positives = 217/425 (51%), Gaps = 45/425 (10%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L+D D RL+T +V G I+ R D+ + +K +EP + ++L +++ LD
Sbjct: 41 LNDSDKRLLTTLVYGVIQHRLTFDYWLTPFIKQKK----IEPWVRELLYTALFQLQYLDK 96
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVL--LKDNNSLPLPKLEGNDRAQARAL 223
+P +A+ +E++ +AK G V IL + L D N++ P + L
Sbjct: 97 IPQHAIFNESIEVAKTLGHIGTAKFVTAILHNISRQGLPDINAIQNP---------IQRL 147
Query: 224 ATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSR----KGVTRADLVMQLN 279
+ S PVW++ K G+ + +++ N P+ ++R N+ + V +A L
Sbjct: 148 SVEASLPVWLIETLVKQNGEAKTRQIIGSINDAPAQAIRVNTALSTDEAVEQALLDEHFT 207
Query: 280 LLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGL-VVAVVDPQPGQS 338
+K +V + V TG +V + ++GL +QDESA L V A+ ++
Sbjct: 208 FVKSKVA--------DHAYVVTG-GHVAGSKAYQDGLLTLQDESAMLPVEALQITTQVKT 258
Query: 339 IVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT 398
++D AAPGGKT +A ++ + A+DI+ ++R++ AK +V+ I D R
Sbjct: 259 VLDAAAAPGGKTTQIAQYIADDATIIALDIHAHKIRLIEANAKRLRVSDKITAQVLDARQ 318
Query: 399 FADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPG 458
A+ T K D++L+DAPCSG G+L ++ ++R+++ LED+ L LQ E+LD+ S V
Sbjct: 319 TANQLTTKFDRILVDAPCSGFGLLRRKPEIRYDKTLEDVMNLASLQGEILDSVSQNVADN 378
Query: 459 GVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADG--------------LVPSDFVTKH 504
G++VYSTC+I +EN++ + FL +H +F + P + P+D+ T
Sbjct: 379 GMIVYSTCTILRQENDDVIARFLSKHTDFELVPTMTNKALKSNRQETVLHIYPNDYHTD- 437
Query: 505 GFFFS 509
GFF +
Sbjct: 438 GFFVA 442
>gi|414597017|ref|ZP_11446588.1| Putative rRNA methylase [Leuconostoc citreum LBAE E16]
gi|390482131|emb|CCF28649.1| Putative rRNA methylase [Leuconostoc citreum LBAE E16]
Length = 437
Score = 172 bits (435), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 124/425 (29%), Positives = 217/425 (51%), Gaps = 45/425 (10%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L+D D RL+T +V G I+ R D+ + +K +EP + ++L +++ LD
Sbjct: 28 LNDSDKRLLTTLVYGVIQHRLTFDYWLTPFIKQKK----IEPWVRELLYTALFQLQYLDK 83
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVL--LKDNNSLPLPKLEGNDRAQARAL 223
+P +A+ +E++ +AK G V IL + L D N++ P + L
Sbjct: 84 IPQHAIFNESIEVAKTLGHIGTAKFVTAILHNISRQGLPDINAIQNP---------IQRL 134
Query: 224 ATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSR----KGVTRADLVMQLN 279
+ S PVW++ K G+ + +++ N P+ ++R N+ + V +A L
Sbjct: 135 SVEASLPVWLIETLVKQNGEAKTRQIIGSINDAPAQAIRVNTALSTDEAVEQALLDEHFT 194
Query: 280 LLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGL-VVAVVDPQPGQS 338
+K +V + V TG +V + ++GL +QDESA L V A+ ++
Sbjct: 195 FVKSKVA--------DHAYVVTG-GHVAGSKAYQDGLLTLQDESAMLPVEALQITTQVKT 245
Query: 339 IVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT 398
++D AAPGGKT +A ++ + A+DI+ ++R++ AK +V+ I D R
Sbjct: 246 VLDAAAAPGGKTTQIAQYIADDATIIALDIHAHKIRLIEANAKRLRVSDKITAQVLDARQ 305
Query: 399 FADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPG 458
A+ T K D++L+DAPCSG G+L ++ ++R+++ LED+ L LQ E+LD+ S V
Sbjct: 306 TANQLTTKFDRILVDAPCSGFGLLRRKPEIRYDKTLEDVMNLASLQGEILDSVSQNVADN 365
Query: 459 GVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADG--------------LVPSDFVTKH 504
G++VYSTC+I +EN++ + FL +H +F + P + P+D+ T
Sbjct: 366 GMIVYSTCTILRQENDDVIARFLSKHTDFELVPTMTNKALKSNRQETVLHIYPNDYHTD- 424
Query: 505 GFFFS 509
GFF +
Sbjct: 425 GFFVA 429
>gi|445059863|ref|YP_007385267.1| 16S rRNA methyltransferase B [Staphylococcus warneri SG1]
gi|443425920|gb|AGC90823.1| 16S rRNA methyltransferase B [Staphylococcus warneri SG1]
Length = 435
Score = 172 bits (435), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 124/427 (29%), Positives = 219/427 (51%), Gaps = 31/427 (7%)
Query: 104 TKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTF--SSMEPLLLQILRIGFYEI 161
T ++ D D L T++V GT++ + LD + K F + ++ + ++L + Y+
Sbjct: 33 TYEISDLDKGLFTELVYGTVKRKYTLDFYL-------KPFLKTKIKGWVRELLWMSIYQY 85
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
V LD +P +A+++E V +AK GN+VNGILR ++ + LP + +D+
Sbjct: 86 VYLDKVPDHAIINEAVEIAKEEGGYYTGNVVNGILRNIM----RSELPDVQDIQDDK--- 138
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
+ +A YS P W+V W + G E+ + + ++RAN +G + D++ L
Sbjct: 139 KRIAIQYSLPKWLVDHWVTHYGLEQTEAIAQSFLEPVATTVRANITRG-SIDDIISALEK 197
Query: 281 LKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIV 340
V + L I K ++ + K+GL ++QD+S+ V ++D S++
Sbjct: 198 ESYIVDRDDVLPFCLHISGKP----IVNSRAFKDGLVSIQDKSSMFVAHIMDLNRNDSVL 253
Query: 341 DCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILN-ETAKLHQVNSVIRTIHADLRTF 399
D C+APGGK ++A LS +G V A DI+ ++++++ KL ++ I A
Sbjct: 254 DACSAPGGKACHIAEILSPEGHVDATDIHDHKIKLIDFNIRKLR-----LKNIEAYQHDA 308
Query: 400 ADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGG 459
+ + DK+L+DAPCSG GVL + ++++ + ++ L LQ ++L+ VKPGG
Sbjct: 309 TEPYVTQYDKILVDAPCSGFGVLRHKPEIKYTQSKNSIQSLVELQLQILENVKHNVKPGG 368
Query: 460 VLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGA 519
++YSTC+I+ ENE V FL ++ +F +P + + V F P + DG
Sbjct: 369 SIIYSTCTIEQMENENVVYTFLKQNKDFEFEPFQHPMTGEMVKTLQIF---PQDYHSDGF 425
Query: 520 FAARLVR 526
F AR+ R
Sbjct: 426 FIARIKR 432
>gi|392547674|ref|ZP_10294811.1| 16S rRNA methyltransferase [Pseudoalteromonas rubra ATCC 29570]
Length = 427
Score = 172 bits (435), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 124/399 (31%), Positives = 196/399 (49%), Gaps = 34/399 (8%)
Query: 100 LGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFY 159
L + ++ L +D L+ I G +R L+H L E+ + +L +G Y
Sbjct: 26 LPYASRQLPVKDRALLQQICYGVLRHLPSLEHYCQQLL--EQPLKGKNRVFQFLLYVGIY 83
Query: 160 EIVKLDMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDN-----NSLPLPKLEG 214
++ + +P +A V E V A PG L+N +LR +D N++P+ K
Sbjct: 84 QLQHMRVPAHAAVAETVNAANKLQAPGLKGLINAVLRNFQRAQDTLEASANAIPVCK--- 140
Query: 215 NDRAQARALATIYSHPVWMVRR-WTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRAD 273
Y+HP W +++ Y Q EAI + N LR N R+ T AD
Sbjct: 141 ------------YNHPGWFIKKLQAAYPEQWEAI--LTANQQQAPMWLRVNQRQSTT-AD 185
Query: 274 LVMQLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDP 333
+L+ + H L + I + + +V Q +G +VQD +A + ++ P
Sbjct: 186 YAERLDAQG--IAHTLDADFADGILLTKPV-DVQQLPAFAQGASSVQDAAAQMAARLLAP 242
Query: 334 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIH 393
Q G+ I+D CAAPGGKT ++ V A+D + RL+ ++E L +++ + +
Sbjct: 243 QDGEHILDACAAPGGKTCHILELADAN--VIALDADGERLKRVDEN--LQRLHLSAQCLE 298
Query: 394 ADLRTF-ADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAAS 452
AD T A + D++LLD PCS GV+ + D++W RR D++EL LQ +LDA
Sbjct: 299 ADAATPDAWWQGEQFDRILLDVPCSATGVIRRHPDIKWLRRATDIDELATLQARILDAIW 358
Query: 453 LLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDP 491
L+KPGG LVY+TCS+ P+EN E+V AFL R + + P
Sbjct: 359 PLLKPGGTLVYATCSVLPQENAEQVAAFLSRTADAQLTP 397
>gi|392971815|ref|ZP_10337208.1| putative RNA methyltransferase [Staphylococcus equorum subsp.
equorum Mu2]
gi|392510354|emb|CCI60498.1| putative RNA methyltransferase [Staphylococcus equorum subsp.
equorum Mu2]
Length = 437
Score = 171 bits (434), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 122/430 (28%), Positives = 224/430 (52%), Gaps = 62/430 (14%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD 165
+L+ D L T++V GT++ + LD+L+ + ++ + Q+L + Y+ V LD
Sbjct: 37 ELNRADKGLFTELVYGTLKRKFSLDYLLKPFVQ-----TKLKGWVRQLLWMSIYQYVYLD 91
Query: 166 -MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P +A+++E V +AK P GN+VNGILR ++ + LP +D+ + +A
Sbjct: 92 KVPEHAIINEAVEIAKRKGGPHNGNVVNGILRNIM----RSDLPDFTEITDDK---KRIA 144
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQ 284
YS P W+V W+ + G E+ A + +T+ +++NL ++
Sbjct: 145 IEYSLPKWLVDHWSTHFGIEKT---------------EAIAESFLTKVATTVRVNLTRIS 189
Query: 285 VPHELS-LHLDEFI-----RVKTGL----QNVIQAGLLKEGLCAVQDESAGLVVAVVDPQ 334
+ + L D++I + T L + +I++ + K+GL ++QD+S+ V ++
Sbjct: 190 IEDAIRRLVEDDYIVEQDNEIDTCLHISGKPIIESRMFKDGLVSIQDKSSMFVAELMGLN 249
Query: 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHA 394
G ++D C+APGGK ++A L+G G + A DI + ++ +++ K ++ +
Sbjct: 250 EGDEVLDACSAPGGKACHIAEVLNGTGHIDATDIYEHKIDLIDFNIKKLRL--------S 301
Query: 395 DLRTFADNSTVKC----DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDA 450
++ F ++T K DK+L+DAPCSGLGVL + ++++ + + ++ L +Q E+L+
Sbjct: 302 NISAFEHDATEKYGKVYDKILVDAPCSGLGVLRHKPEIKYEQSQQSIQSLVEIQLEILNN 361
Query: 451 ASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSID----PADG-------LVPSD 499
+KPGG L+YSTC+I+ ENE V FL + +F D P G ++P D
Sbjct: 362 VKDNLKPGGTLIYSTCTIEQLENENVVYTFLKDNKDFEFDTFEHPITGEKVKTMQVLPQD 421
Query: 500 FVTKHGFFFS 509
F GFF +
Sbjct: 422 F-NSDGFFIT 430
>gi|323692061|ref|ZP_08106308.1| sun protein [Clostridium symbiosum WAL-14673]
gi|323503861|gb|EGB19676.1| sun protein [Clostridium symbiosum WAL-14673]
Length = 449
Score = 171 bits (434), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 125/423 (29%), Positives = 204/423 (48%), Gaps = 31/423 (7%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L+ +D + +V GT+ +R LD++ L + + + M+P++ ILR+ Y+I +D
Sbjct: 45 LEKQDRSFIKRVVDGTVEYRIQLDYI--LNSYSKVKVNKMKPVIRTILRMSAYQICHMDR 102
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A +E V+LA+ G VNG+LR + KDN P +
Sbjct: 103 VPDSAACNEAVKLAEKRGFSGLKGFVNGVLRSISRGKDNLVFPDDSIR------------ 150
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQ- 284
YS P W+ W G+E ++M D +R + RA+ L+ L Q
Sbjct: 151 -YSMPEWLASMWKSAYGEETFRRMMESFLKDRPLM----ARLCLNRAEKQQILDSLGAQG 205
Query: 285 VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 344
V + S + D+ I ++ G+ + +EG +QD S+ L + G ++D C
Sbjct: 206 VTAKDSRYADDVICLE-GVDYLEGLEAFREGWLQIQDLSSSLAGDAAGIKDGDYVIDVCG 264
Query: 345 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNST 404
APGGK L+ A L G G+V DI++ ++ ++ E + + +R D +F +S
Sbjct: 265 APGGKGLHAADILGGTGMVEIRDISEAKVSLIEENIGRSGLTN-LRAAVCDALSFDPDSE 323
Query: 405 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464
D V+ D PCSGLG++ ++ D+++N E + +L LQ E+L VKPGG LVYS
Sbjct: 324 EAADVVIADLPCSGLGIIGRKPDIKYNMTPEKLHDLACLQREILSVVQRYVKPGGTLVYS 383
Query: 465 TCSIDPEENEERVEAFLLRHPEFSIDPAD-----GLVPSDFVTKHGFFFSDPIKHSLDGA 519
TC+++ EENE+ + FL F +P + G S+ + G+ P H DG
Sbjct: 384 TCTVNREENEDNMRWFL---EHFPFEPVNLKGRLGEKLSELSMESGYIQFLPGIHPCDGF 440
Query: 520 FAA 522
F A
Sbjct: 441 FIA 443
>gi|449946991|ref|ZP_21807132.1| putative RNA-binding Sun protein [Streptococcus mutans 11SSST2]
gi|449169161|gb|EMB71947.1| putative RNA-binding Sun protein [Streptococcus mutans 11SSST2]
Length = 437
Score = 171 bits (434), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 126/420 (30%), Positives = 219/420 (52%), Gaps = 44/420 (10%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L D L+T++V GT+ + L+ + D + +E + +L + Y+I+ LD
Sbjct: 39 LSQADRSLLTELVYGTLTRKITLEWYLAHYIEDR---NKLETWIYYLLMLSLYQILYLDK 95
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P +A+V+E V LAK R GA LVN +LR+ + K P + R R T
Sbjct: 96 IPQHAIVNEAVDLAKSRNR-GAEKLVNAVLRQFLRQKR------PDITVIKRKNKRYSIT 148
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
YS PVW+V++ G++ AI ++ S +R+ + V D Q+ ++
Sbjct: 149 -YSVPVWLVKKMIGQFGEDRAISIL------KSLLVRSKASIRVVNPD---QIEVIAKAT 198
Query: 286 PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAA 345
+ S+ L VK Q + L K+G +QDES+ LV + + ++++D C+A
Sbjct: 199 GAKKSV-LSPCGLVKASGQ-FFDSDLFKQGKITIQDESSQLVAPTLAIKGNETVLDACSA 256
Query: 346 PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT----FAD 401
PGGKT+++AS L+ G + A+D+ +L+++ + A + + I+ D R FA
Sbjct: 257 PGGKTVHIASYLTT-GQIIALDLYDHKLKLIKDNADRLKAANYIKPQKLDARKVHKYFAK 315
Query: 402 NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVL 461
++ DK+L+DAPCSG+G++ ++ D+++N+ +D L+ +Q E+LD+ +K GG++
Sbjct: 316 DT---FDKILVDAPCSGIGLIRRKPDIKYNKDSKDFTSLQKIQLEILDSVCQTIKKGGII 372
Query: 462 VYSTCSIDPEENEERVEAFLLRHPEFS------------IDPADGLVPSDFVTKHGFFFS 509
YSTC+I EEN+ ++ FL +HP F +D + P ++T GFF S
Sbjct: 373 TYSTCTIFAEENQMVLKQFLEQHPNFEQVKLNHKKKDIVVDGCLLITPEQYLT-DGFFIS 431
>gi|333929434|ref|YP_004503013.1| ribosomal RNA small subunit methyltransferase B [Serratia sp. AS12]
gi|333934387|ref|YP_004507965.1| ribosomal RNA small subunit methyltransferase B [Serratia
plymuthica AS9]
gi|386331257|ref|YP_006027427.1| Ribosomal RNA small subunit methyltransferase B [Serratia sp. AS13]
gi|333475994|gb|AEF47704.1| Ribosomal RNA small subunit methyltransferase B [Serratia
plymuthica AS9]
gi|333493494|gb|AEF52656.1| Ribosomal RNA small subunit methyltransferase B [Serratia sp. AS12]
gi|333963590|gb|AEG30363.1| Ribosomal RNA small subunit methyltransferase B [Serratia sp. AS13]
Length = 429
Score = 171 bits (434), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 134/422 (31%), Positives = 211/422 (50%), Gaps = 40/422 (9%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
K + D+D L+ ++ GT+R L+ I L K + + L +L +G Y+++
Sbjct: 34 KTISDKDRALLQELCFGTLRVLPQLEWCIQQLM--AKPMTGKQRTLHYLLMVGLYQLLYT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P +AV+ E V A RP L+NG+LR+ + L + ND
Sbjct: 92 RIPAHAVLAETVEGAVALKRPQLKGLINGVLRQF---QRQQEELLQRAANND-------- 140
Query: 225 TIYSHPVWMVRRWTK-YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKL 283
+ Y HP W+++R + Y Q E I + NN P LR N R TR D L
Sbjct: 141 SRYLHPSWLLKRIQQAYPAQWEQI--IDANNQKPPMWLRVN-RLHHTREDY--------L 189
Query: 284 QVPHELSLHLDEFIRVKTGLQNVIQAGL-----LKEGLCAVQDESAGLVVAVVDPQPGQS 338
++ + + + + L+ ++ + +G VQD SA V ++DPQ G+
Sbjct: 190 RLMEQAGIAAEPHAEYRDALRLLVPCAVTDLPGFADGWVTVQDASAQGCVDLLDPQDGEQ 249
Query: 339 IVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT 398
I+D CAAPGGKT ++ + + V A+DI++ RL + E + ++++ ++ D RT
Sbjct: 250 ILDLCAAPGGKTTHILEA-APKAHVMAVDIDEQRLGRVKENLQRLRLHAEVKL--GDGRT 306
Query: 399 FADNSTVK-CDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKP 457
K D++LLDAPCS GV+ + D++W RR D+ EL LQ E++DA +K
Sbjct: 307 PQQWCGDKQFDRILLDAPCSATGVIRRHPDIKWLRRDSDIAELAKLQAEIIDAIWPHLKS 366
Query: 458 GGVLVYSTCSIDPEENEERVEAFLLRHPEFS-IDPADGLVPSDFVTKH-----GFFFSDP 511
GGV+VY+TCSI P EN E+V AFL RHP+ ++ + P H GFF++
Sbjct: 367 GGVMVYATCSILPTENAEQVTAFLQRHPDARLVETGNEQQPGRQNLPHPEDGDGFFYAKL 426
Query: 512 IK 513
IK
Sbjct: 427 IK 428
>gi|417797986|ref|ZP_12445172.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21310]
gi|418656900|ref|ZP_13218686.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus IS-105]
gi|334277108|gb|EGL95347.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21310]
gi|375032068|gb|EHS25324.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus IS-105]
Length = 435
Score = 171 bits (434), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 129/428 (30%), Positives = 214/428 (50%), Gaps = 58/428 (13%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTF--SSMEPLLLQILRIGFYEIVK 163
+L+ D L T+IV GT++ + LD + K F + ++ + Q+L + Y+ V
Sbjct: 35 ELNAMDKALFTEIVYGTVKRKYTLDFYL-------KPFVKTKIKAWVRQLLWMSIYQYVY 87
Query: 164 LD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVL--LKDNNSLPLPKLEGNDRAQA 220
LD +P +A+++E V +AK GN+VNGILR ++ L D N + PK
Sbjct: 88 LDKVPNHAIINEAVEIAKERGGYHNGNVVNGILRTMMRSDLPDFNEIADPK--------- 138
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADL-----V 275
+ +A YS P W++ W + G EE ++ S ++RAN +TRA L
Sbjct: 139 KRMAIEYSMPKWIIDHWATHYGLEETETILQSFLETTSTTVRAN----LTRASLDDIIEK 194
Query: 276 MQLNLLKLQVPHEL--SLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDP 333
+Q ++ H+L LH+ G Q +I + K+G ++QD+S+ V +++
Sbjct: 195 LQDEGYDVEKDHDLPYCLHI--------GGQPIIHSRSFKDGFVSIQDKSSMFVAHIMNV 246
Query: 334 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILN-ETAKLHQVNSVIRTI 392
++D C+APGGK ++A L +G V A DI+ ++ ++N KL N I+
Sbjct: 247 DRHDHVLDACSAPGGKACHIAEVLMPEGQVDASDIHDHKIDLINFNIKKLRLTN--IKAF 304
Query: 393 HADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAAS 452
D D + DK+L+DAPCSGLGV+ + ++++ + + +E L LQ E+L+
Sbjct: 305 QHDATKLYDKT---YDKILVDAPCSGLGVMRHKPEIKYTQSKQHIESLVDLQLEILENVK 361
Query: 453 LLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADG-----------LVPSDFV 501
VK GG ++YSTC+I+ ENE + FL + F +P ++P DF
Sbjct: 362 NNVKIGGEIIYSTCTIEQLENENVIYTFLKNNKNFEFEPFQHPITGELVKTLQIMPQDF- 420
Query: 502 TKHGFFFS 509
GFF +
Sbjct: 421 NSDGFFIT 428
>gi|302671346|ref|YP_003831306.1| rRNA small subunit methyltransferase B Sun [Butyrivibrio
proteoclasticus B316]
gi|302395819|gb|ADL34724.1| rRNA small subunit methyltransferase B Sun [Butyrivibrio
proteoclasticus B316]
Length = 450
Score = 171 bits (434), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 128/430 (29%), Positives = 209/430 (48%), Gaps = 26/430 (6%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
LD RD + + G + +D++I + + M+P + ++R+ Y+I+ +D
Sbjct: 36 LDTRDKSFIKRVTEGCLERNIQIDYIID--SYAKTPVRQMQPFIRALMRMSTYQIMFMDS 93
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A +E V+LA G VNG+LR + KD P K G L+
Sbjct: 94 VPDSAACNEAVKLAAKHKFAGLKGFVNGVLRNVSRGKDQIKYPDKKENGG----TDYLSV 149
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRA--NSRKGVTRADLVMQLNLLKL 283
+YS P W+ W G ++ K++ + S ++R N + ++ +L L
Sbjct: 150 MYSMPEWLCEMWIGEYGFDKTEKMLEFFLSPRPTTIRVTRNLPQSISVQELEQNLGEAGA 209
Query: 284 QV------PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQ 337
V P+ L L + I+ G KEG AVQD S+ LVV V DPQ Q
Sbjct: 210 TVRANSLLPYALELEKTDNIKYLPGF---------KEGQFAVQDVSSMLVVEVADPQNKQ 260
Query: 338 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR 397
++D CAAPGGK+++ A + G VY+ D++ +++++ + A +N+V ++ D +
Sbjct: 261 VVIDVCAAPGGKSMHAAERVYPDGTVYSRDLSDKKIQLIEDNALRLGLNNVNIKVN-DAK 319
Query: 398 TFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKP 457
+ + D +LLD PCSGLG+L ++ D++ N + + +EEL LQ E++ + VK
Sbjct: 320 IHDEELKSQADILLLDVPCSGLGILGRKNDIKHNIKPKGLEELTKLQWEIVKSCWDYVKI 379
Query: 458 GGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGL-VPSDFVTKHGFFFSDPIKHSL 516
GG L+YSTC+++ ENEE V P D D L P G+ P ++
Sbjct: 380 GGTLIYSTCTVNKAENEEMVRKICNELPFKLEDFTDKLPEPLRESASKGYIQLIPGEYGT 439
Query: 517 DGAFAARLVR 526
DG F A+L R
Sbjct: 440 DGFFIAKLKR 449
>gi|331091584|ref|ZP_08340420.1| ribosomal RNA small subunit methyltransferase B [Lachnospiraceae
bacterium 2_1_46FAA]
gi|330403611|gb|EGG83167.1| ribosomal RNA small subunit methyltransferase B [Lachnospiraceae
bacterium 2_1_46FAA]
Length = 449
Score = 171 bits (434), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 126/424 (29%), Positives = 205/424 (48%), Gaps = 22/424 (5%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
LD ++ +T +V GT+ +D++I + + M+P++ I+R Y+I +D
Sbjct: 39 LDKKERAFITRVVEGTLEHLIEIDYIINQF--SKVKVNKMKPVIRTIIRNSVYQIKYMDS 96
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P AV +E V+LA+ VNG+LR + N P + + ++
Sbjct: 97 VPNSAVCNEAVKLAEKKGFFQLKGFVNGVLRNIDRNVSNIQYP------DKKNMVEYMSI 150
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
YS P+W++ W K +++ + ++R N K +++ +LV +L ++V
Sbjct: 151 KYSMPIWILEEWGKSYDFSVIERILQGFLEEKGTTIRCNLNK-ISKEELVEKLKKENVRV 209
Query: 286 PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAA 345
L I +G + +EG VQD S+ LV + DP+ ++D C+A
Sbjct: 210 KEHAYLPYALEI---SGYNYLGDMESFREGDFQVQDISSMLVSEIADPKKEDYVIDVCSA 266
Query: 346 PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTV 405
PGGK L+MA L G V A D+ ++ ++ + + + + IR + D + S
Sbjct: 267 PGGKALHMADKLGETGYVEARDLTDYKVSLIEDNIERSGMKN-IRAVKQDALICDEESKE 325
Query: 406 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465
K D VL D PCSGLGVL K+ D+++ E +ELK LQ ++L KPGG LVYST
Sbjct: 326 KADIVLADLPCSGLGVLGKKTDIKYKMTRETQQELKKLQRKILSVVQNYTKPGGTLVYST 385
Query: 466 CSIDPEENEERVEAFLLRHPEFSIDP-----ADGLVPSDFVTKHGFFFSDPIKHSLDGAF 520
C+I+ EEN V FL ++P++ + D L PS K G P H+ DG F
Sbjct: 386 CTINEEENIGNVRWFLKQYPQYQLVSVEDRLCDELKPS---VKEGCLQLLPGIHNSDGFF 442
Query: 521 AARL 524
A+
Sbjct: 443 IAKF 446
>gi|270264342|ref|ZP_06192608.1| hypothetical protein SOD_h00090 [Serratia odorifera 4Rx13]
gi|270041478|gb|EFA14576.1| hypothetical protein SOD_h00090 [Serratia odorifera 4Rx13]
Length = 429
Score = 171 bits (434), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 135/417 (32%), Positives = 209/417 (50%), Gaps = 30/417 (7%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
K + D+D L+ ++ GT+R L+ I L K + + L +L +G Y+++
Sbjct: 34 KTISDKDRALLQELCFGTLRVLPQLEWCIQQLM--AKPMTGKQRTLHYLLMVGLYQLLYT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P +AV+ E V A RP L+NG+LR+ + L + ND
Sbjct: 92 RIPAHAVLAETVEGAVALKRPQLKGLINGVLRQF---QRQQEELLQRAANND-------- 140
Query: 225 TIYSHPVWMVRRWTK-YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKL 283
+ Y HP W+++R + Y Q E I + NN P LR N R TR D + + +
Sbjct: 141 SRYLHPSWLLKRIQQAYPAQWEQI--IDANNQKPPMWLRVN-RLHHTREDYLRLME--QA 195
Query: 284 QVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCC 343
+ E + +R+ G +G VQD SA V ++DPQ G+ I+D C
Sbjct: 196 GIAAEPHAEYPDALRLLVPCAVTDLPGF-ADGWVTVQDASAQGCVDLLDPQNGEQILDLC 254
Query: 344 AAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS 403
AAPGGKT ++ + + V A+DI++ RL + E + ++++ ++ D RT
Sbjct: 255 AAPGGKTTHILEA-APKAHVMAVDIDEQRLGRVKENLQRLRLHAEVKL--GDGRTPQQWC 311
Query: 404 TVK-CDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLV 462
K D++LLDAPCS GV+ + D++W RR D+ EL LQ E++DA +K GGV+V
Sbjct: 312 GDKQFDRILLDAPCSATGVIRRHPDIKWLRRDSDIAELAKLQAEIIDAIWPHLKSGGVMV 371
Query: 463 YSTCSIDPEENEERVEAFLLRHPEFS-IDPADGLVPSDFVTKH-----GFFFSDPIK 513
Y+TCSI P EN E++ AFL RHP+ ++ D P H GFF++ IK
Sbjct: 372 YATCSILPTENAEQITAFLQRHPDARLVETGDEQQPGRQNLPHPEDGDGFFYAKLIK 428
>gi|228475051|ref|ZP_04059779.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
hominis SK119]
gi|314936621|ref|ZP_07843968.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
hominis subsp. hominis C80]
gi|418620475|ref|ZP_13183279.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
hominis VCU122]
gi|228271036|gb|EEK12424.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
hominis SK119]
gi|313655240|gb|EFS18985.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
hominis subsp. hominis C80]
gi|374822605|gb|EHR86625.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
hominis VCU122]
Length = 435
Score = 171 bits (434), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 129/417 (30%), Positives = 215/417 (51%), Gaps = 46/417 (11%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTF--SSMEPLLLQILRIGFYEIVKLD-MP 167
D L T++V GTI+ + LD + K F + ++ + Q+L + Y+ V LD +P
Sbjct: 40 DKALFTELVYGTIKRKMTLDFYL-------KPFVKTRIKGWVRQLLWMSLYQYVFLDKIP 92
Query: 168 PYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIY 227
+A+++E V +AK GN+VN ILR + LP LE + R + Y
Sbjct: 93 NHAIINEAVNIAKRRGGQHNGNIVNAILRHIF------KSDLPTLETIKNEKQR-MTIEY 145
Query: 228 SHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANS--RKGVTRADLVMQLNLLKLQV 285
S P W++ W + G E K+ SF +++ S R +R D V ++ LQ
Sbjct: 146 SIPRWIIEHWITHYGIETTHKIA------KSFLVQSASTVRVNTSRTD-VETISKALLQE 198
Query: 286 PHELSLHLDEFIRVKTGLQN--VIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCC 343
+ + + D+ I L VI++ K+GL ++QD+S+ LV ++D Q +I+D C
Sbjct: 199 GYHVDI--DQLIPYCLHLTGKPVIESRAFKDGLISIQDKSSMLVGYLMDVQKDDTILDAC 256
Query: 344 AAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS 403
+APGGK +MA L+ G V A DI+K ++ ++ E K ++ +V H + +++
Sbjct: 257 SAPGGKACHMAELLASTGHVDATDIHKHKIGLIKENIKKLKLKNVSTFDHDATKPYSE-- 314
Query: 404 TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463
DK+L+DAPCSGLGVL + ++++ + + + +L +Q +LD +KPGG L+Y
Sbjct: 315 --LYDKILVDAPCSGLGVLKHKPEIKYVQSKDSINDLVEIQLSILDNVKHNLKPGGSLIY 372
Query: 464 STCSIDPEENEERVEAFLLRHPEFSID----PADG-------LVPSDFVTKHGFFFS 509
STC+I+ ENE + FL + +F + P G ++P DF GFF +
Sbjct: 373 STCTIEQMENENVIYTFLKENKDFEFELITHPITGEKVKTLQILPQDF-NSDGFFIT 428
>gi|300361951|ref|ZP_07058128.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
gasseri JV-V03]
gi|300354570|gb|EFJ70441.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
gasseri JV-V03]
Length = 438
Score = 171 bits (434), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 133/424 (31%), Positives = 216/424 (50%), Gaps = 28/424 (6%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD 165
+L D L T IV GTI+++ +L++ + L + + PLLL + Y+ L+
Sbjct: 34 ELKPADKALATRIVYGTIQYKIFLEYQLKPLIKTKLRDKFLMPLLL----MSAYQYFFLE 89
Query: 166 -MPPYAVVDENVRLAKVALRPGAGN--LVNGILRKLVLLKDNNSLPLPKLEGNDRAQARA 222
+P A+ DE +LAK + +G+ LVNGILR L + LP +
Sbjct: 90 KVPANAIFDEANKLAKKFSKKNSGSYKLVNGILR--ALERQGKVLP------SSDNLVDY 141
Query: 223 LATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLK 282
L+ S P W+V + G+++ +++V +N + S+R + KG ++ L K
Sbjct: 142 LSIKESFPKWLVEYLLDHFGEDQTKEILVRSNQPAANSIRMAAVKGKFEE---IKTALRK 198
Query: 283 LQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 342
+ S + + G V Q L K+G +QD +A L V + + ++D
Sbjct: 199 DGFDFKESCLTRHNLNLSKG--GVAQTSLFKDGKITIQDAAASLAVDAFNFTGNEQVLDA 256
Query: 343 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN 402
C+APGGKT+ +A L+ G V A+DI++ +LR++ AK V+ ++T D R +
Sbjct: 257 CSAPGGKTVQIAEKLTN-GSVIALDIHENKLRLVKNAAKRLHVSDKVKTKALDARKAQEY 315
Query: 403 STV-KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVL 461
T + DK+L+DAPCSGLG++ ++ ++R+ + L+D++ L +Q +L+ S L+ P G L
Sbjct: 316 FTAGQFDKILVDAPCSGLGLIRRKPEIRYEKSLDDIKNLARIQLSILENISGLLAPSGEL 375
Query: 462 VYSTCSIDPEENEERVEAFLLRHPEFSIDPAD-GLVPSDFVTKHGFFFSDPIKHSLDGAF 520
VYSTC+I EE+E V FL HPEF + P G +P K P DG F
Sbjct: 376 VYSTCTISLEEDEGVVNQFLKLHPEFDLVPVQVGKLP-----KQNMVRIFPSVDGSDGFF 430
Query: 521 AARL 524
A+L
Sbjct: 431 IAKL 434
>gi|450092684|ref|ZP_21856156.1| putative RNA-binding Sun protein [Streptococcus mutans W6]
gi|449217932|gb|EMC17958.1| putative RNA-binding Sun protein [Streptococcus mutans W6]
Length = 437
Score = 171 bits (434), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 126/420 (30%), Positives = 218/420 (51%), Gaps = 44/420 (10%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L D L+T+IV GT+ + L+ + D + +E + +L + Y+I+ LD
Sbjct: 39 LSQADRSLLTEIVYGTLTRKITLEWYLAHYIEDR---NKLETWIYYLLMLSLYQILYLDK 95
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P +A+V+E V LAK R GA LVN +LR+ + K P + R R T
Sbjct: 96 IPQHAIVNEAVDLAKSRNR-GAEKLVNAVLRQFLRQKR------PDITVIKRKNKRYSIT 148
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
YS PVW+V++ G++ AI ++ S +R+ + V D Q+ ++
Sbjct: 149 -YSVPVWLVKKMISQFGEDRAISIL------KSLLVRSKASIRVVNPD---QIEVIAKAT 198
Query: 286 PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAA 345
+ S+ L VK Q + L K+G +QDES+ LV + + ++++D C+A
Sbjct: 199 GAKKSV-LSPCGLVKASGQ-FFDSDLFKQGKITIQDESSQLVAPTLAIKGNETVLDACSA 256
Query: 346 PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT----FAD 401
PGGK +++AS L+ G + A+D+ +L+++ + A + + I+ D R FA
Sbjct: 257 PGGKAVHIASYLTT-GQIIALDLYDHKLKLIKDNADRLKAANYIKPQKLDARKVHKYFAK 315
Query: 402 NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVL 461
++ DK+L+DAPCSG+G++ ++ D+++N+ +D L+ +Q E+LD+ +K GG++
Sbjct: 316 DT---FDKILVDAPCSGIGLIRRKPDIKYNKDSKDFTSLQKIQLEILDSVCQTIKKGGII 372
Query: 462 VYSTCSIDPEENEERVEAFLLRHPEFS------------IDPADGLVPSDFVTKHGFFFS 509
YSTC+I EEN+ ++ FL +HP F +D + P ++T GFF S
Sbjct: 373 TYSTCTIFAEENQMVLKQFLEQHPNFEQVKLNHKKKDIVVDGCLLITPEQYLT-DGFFIS 431
>gi|397649211|ref|YP_006489738.1| 16S rRNA methyltransferase B [Streptococcus mutans GS-5]
gi|449886950|ref|ZP_21786541.1| putative RNA-binding Sun protein [Streptococcus mutans SA41]
gi|449916415|ref|ZP_21796841.1| putative RNA-binding Sun protein [Streptococcus mutans 15JP3]
gi|449988659|ref|ZP_21820657.1| putative RNA-binding Sun protein [Streptococcus mutans NVAB]
gi|450040809|ref|ZP_21837032.1| putative RNA-binding Sun protein [Streptococcus mutans T4]
gi|450062588|ref|ZP_21844433.1| putative RNA-binding Sun protein [Streptococcus mutans NLML5]
gi|450076770|ref|ZP_21850022.1| putative RNA-binding Sun protein [Streptococcus mutans N3209]
gi|392602780|gb|AFM80944.1| 16S rRNA methyltransferase B [Streptococcus mutans GS-5]
gi|449155262|gb|EMB58785.1| putative RNA-binding Sun protein [Streptococcus mutans 15JP3]
gi|449183602|gb|EMB85580.1| putative RNA-binding Sun protein [Streptococcus mutans NVAB]
gi|449198479|gb|EMB99591.1| putative RNA-binding Sun protein [Streptococcus mutans T4]
gi|449205661|gb|EMC06397.1| putative RNA-binding Sun protein [Streptococcus mutans NLML5]
gi|449212174|gb|EMC12551.1| putative RNA-binding Sun protein [Streptococcus mutans N3209]
gi|449253552|gb|EMC51502.1| putative RNA-binding Sun protein [Streptococcus mutans SA41]
Length = 437
Score = 171 bits (434), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 126/420 (30%), Positives = 218/420 (51%), Gaps = 44/420 (10%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L D L+T++V GT+ + L+ I D + +E + +L + Y+I+ LD
Sbjct: 39 LSQADRSLLTELVYGTLTRKITLEWYIAHYIEDR---NKLETWIYYLLMLSLYQILYLDK 95
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P +A+V+E V LAK R GA LVN +LR+ + K P + R R T
Sbjct: 96 IPQHAIVNEAVDLAKSRNR-GAEKLVNAVLRQFLRQKR------PDITVIKRKNKRYSIT 148
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
YS PVW+V++ G++ AI ++ S +R+ + V D Q+ ++
Sbjct: 149 -YSVPVWLVKKMISQFGEDRAISIL------KSLLVRSKASIRVVNPD---QIEVIAKAT 198
Query: 286 PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAA 345
+ S+ L VK Q + L K+G +QDES+ LV + + ++++D C+A
Sbjct: 199 GAKKSV-LSPCGLVKASGQ-FFDSDLFKQGKITIQDESSQLVAPTLAIKGNETVLDACSA 256
Query: 346 PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT----FAD 401
PGGK +++AS L+ G + A+D+ +L+++ + A + + I+ D R FA
Sbjct: 257 PGGKAVHIASYLTT-GQIIALDLYDHKLKLIKDNADRLKAANYIKPQKLDARKVHKYFAK 315
Query: 402 NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVL 461
++ DK+L+DAPCSG+G++ ++ D+++N+ +D L+ +Q E+LD+ +K GG++
Sbjct: 316 DT---FDKILVDAPCSGIGLIRRKPDIKYNKDSKDFTSLQKIQLEILDSVCQTIKKGGII 372
Query: 462 VYSTCSIDPEENEERVEAFLLRHPEFS------------IDPADGLVPSDFVTKHGFFFS 509
YSTC+I EEN+ ++ FL +HP F +D + P ++T GFF S
Sbjct: 373 TYSTCTIFAEENQMVLKQFLEQHPNFEQVKLNHKKKDIVVDGCLLITPEQYLT-DGFFIS 431
>gi|385260165|ref|ZP_10038314.1| ribosomal RNA small subunit methyltransferase B [Streptococcus sp.
SK140]
gi|385192085|gb|EIF39495.1| ribosomal RNA small subunit methyltransferase B [Streptococcus sp.
SK140]
Length = 437
Score = 171 bits (434), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 133/420 (31%), Positives = 214/420 (50%), Gaps = 35/420 (8%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPY 169
D LVT++V GT+ + L+ I D S L +L + Y++ LD +P +
Sbjct: 42 DKGLVTELVYGTVARKLTLEWYISHFIEDRDKLDSW---LYVLLLMSVYQLQYLDKIPDH 98
Query: 170 AVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSH 229
AVV+E V +AK A + G+ LVN +LR++ L++ LP++ R R + YS
Sbjct: 99 AVVNEAVEIAK-ARKKGSEKLVNAVLRRI--LREG----LPEIASIKRKNKRD-SIAYSL 150
Query: 230 PVWMVRRWTKYLGQE--EAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPH 287
PVW++ + + G+E +AI + + S + SRK + L +LL P
Sbjct: 151 PVWLISKLKEEYGEERAQAIFESLLQRNKASIRVTDLSRKEQIKTLLGASDSLLS---PA 207
Query: 288 ELSLHLDEFIRVKTGLQNVIQAG--LLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAA 345
L F AG L EG +QDES+ LV ++ Q + ++D CAA
Sbjct: 208 GLVKEQGHF------------AGHDLFAEGAITIQDESSQLVAPTLELQGDEQVLDACAA 255
Query: 346 PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-ST 404
PGGKT +MAS L+ G V A+D+ +L ++ E A+ V + ++T D R +
Sbjct: 256 PGGKTAHMASYLT-TGQVTALDLYDHKLTLIQENAERLGVANRVQTQKLDARKVHEFFGK 314
Query: 405 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464
+ DK+L+DAPCSG+G+L ++ D+++N+ D L+ +Q E+L + ++ GG++ YS
Sbjct: 315 DQFDKILVDAPCSGIGLLRRKPDIKYNKETADFASLQEIQLEILGSVCQTLRKGGIITYS 374
Query: 465 TCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARL 524
TC+I EEN + V+AFL HPEF + + K+G P + DG F ++
Sbjct: 375 TCTIVSEENFQVVQAFLESHPEFEQVKLEHECKD--IVKNGCILITPELYGSDGFFISQF 432
>gi|15644260|ref|NP_229312.1| sun protein [Thermotoga maritima MSB8]
gi|418045570|ref|ZP_12683665.1| sun protein [Thermotoga maritima MSB8]
gi|4982078|gb|AAD36579.1|AE001799_11 sun protein [Thermotoga maritima MSB8]
gi|351676455|gb|EHA59608.1| sun protein [Thermotoga maritima MSB8]
Length = 431
Score = 171 bits (434), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 119/385 (30%), Positives = 199/385 (51%), Gaps = 30/385 (7%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
LDDRD R ++V G +R LD I L + + P + LR+G Y+++ ++
Sbjct: 34 LDDRDRRFFKELVWGVVRKEELLDWYINQLLKKK----DIPPAVRVALRMGAYQLLFMNS 89
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P YA V E V+L K LVN +LR+L ++P PK L
Sbjct: 90 VPDYAAVSETVKLVK---NENFKKLVNAVLRRL------RTVPEPK----------ELHL 130
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQ- 284
+YSHP W+V W +L +E +++M WN LR NS T+ +++ L +
Sbjct: 131 VYSHPEWIVNYWRSFLPEEAVLRIMKWNQEPLPVMLRVNSL-AATKEEVIKILAEEGTEA 189
Query: 285 VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 344
VP + + I K G+ + + ++ +GL +VQ ES+ LV ++ +PG ++D CA
Sbjct: 190 VPGKHAPF--SLIVRKLGVP-MNDSRVINDGLASVQGESSQLVPFFMELRPGLRVLDTCA 246
Query: 345 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNST 404
APGGKT +A + QG + A+DI++ +++++ + AK +++S I T AD +
Sbjct: 247 APGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSS-IETKIADAERLTEYVQ 305
Query: 405 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464
D+VL+DAPC+ LG ++ ED E+ +Q ++ A L++ GG+L+YS
Sbjct: 306 DTFDRVLVDAPCTSLGTARNHPEVLRRVNKEDFEKFSEIQLRMVQQAWQLLEKGGILLYS 365
Query: 465 TCSIDPEENEERVEAFLLRHPEFSI 489
TC++ EEN E V+ F+ + +
Sbjct: 366 TCTVTKEENTEVVKRFVYEQKDVEV 390
>gi|381183025|ref|ZP_09891794.1| 16S rRNA methyltransferase B [Listeriaceae bacterium TTU M1-001]
gi|380317083|gb|EIA20433.1| 16S rRNA methyltransferase B [Listeriaceae bacterium TTU M1-001]
Length = 441
Score = 171 bits (434), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 121/394 (30%), Positives = 209/394 (53%), Gaps = 26/394 (6%)
Query: 101 GFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEP--LLLQILRIGF 158
+ +DL+ D L+T++V GTI+ + LD + + F EP + +LR+
Sbjct: 30 ALKKQDLNAADRGLLTELVYGTIQRKITLDFYL-------EPFLKKEPEDWVQNLLRLSV 82
Query: 159 YEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDR 217
Y++ LD +P +A++ E +A+ G VNG+LR ++ + P +D
Sbjct: 83 YQLAFLDKIPEHAILHEAGEIARKRGHEGVTKFVNGVLRNII----RSGFPAFNDISDDV 138
Query: 218 AQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQ 277
+ L+ S P W+ R G +A++L P+ ++R N+ + ++ LV +
Sbjct: 139 LR---LSIEASLPEWLAERLIDQYGYRQALELGEAFLVPPNQTVRVNTTETNPKS-LVKE 194
Query: 278 LNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQ 337
+ ++S + + ++ G ++ K G C +QDES+ +V ++ +
Sbjct: 195 FA--DQGIASKVSETIPWALEIEKG--SIANTNAFKTGKCTIQDESSMVVAYALELKDDL 250
Query: 338 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAK-LHQVNSVIRTIHADL 396
++D CAAPGGKT +A ++G G V A+DI+ + +++ + A+ L+ +N IRT+ D
Sbjct: 251 DVLDACAAPGGKTTLIAEKMNGTGSVMALDIHAHKTKLVEQAARRLNLLN--IRTLALDA 308
Query: 397 RTFADNSTVKC-DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLV 455
R K D+VL+DAPCSG GVL ++ D++++++ ED+ L +Q +LD S LV
Sbjct: 309 RKATTEFEEKSFDRVLVDAPCSGFGVLKRKPDIKYSKKPEDITRLSEIQLAILDEVSQLV 368
Query: 456 KPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSI 489
K G+LVYSTC+ID EN E V+ FL HPEF +
Sbjct: 369 KENGILVYSTCTIDEMENAEVVQKFLNSHPEFEM 402
>gi|257438997|ref|ZP_05614752.1| ribosomal RNA small subunit methyltransferase B [Faecalibacterium
prausnitzii A2-165]
gi|257198582|gb|EEU96866.1| ribosomal RNA small subunit methyltransferase B [Faecalibacterium
prausnitzii A2-165]
Length = 440
Score = 171 bits (434), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 132/433 (30%), Positives = 211/433 (48%), Gaps = 44/433 (10%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
R + L+ RD I + + LD ++ K + ++P + +ILR +
Sbjct: 30 LRRQKLEGRDKAFAGAIFYTVLEHQGTLDFILEQFL--PKGLARLDPQVREILRAALAQA 87
Query: 162 VKLDMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQAR 221
+ +P A V+E V+L + + A LVN +LRK N L + N+ +
Sbjct: 88 RYMQVPVSAAVNEAVKLTRTFKKASASGLVNAVLRKAC----NYDLETARFR-NETQRLM 142
Query: 222 ALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRK--GVTRADLVMQLN 279
L + +R T Y EEA+ ++ SLRAN K + +++
Sbjct: 143 VLGSAGQDVAEFLR--THY--PEEALGILTHTADGGCTSLRANCLKMDAAALCEKLLESG 198
Query: 280 LLKLQ---VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPG 336
+ Q VP + + + + L KEG V+ +++ L V+ +PG
Sbjct: 199 VKSAQPGLVPGSVLAKFE---------GSPAEHPLFKEGCFHVEGQASQLAALCVEAKPG 249
Query: 337 QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADL 396
+++D CAAPGGKTL +A + GQG +Y+ D+ + R+ ++ ++V R A +
Sbjct: 250 DTVIDLCAAPGGKTLLLAEEMQGQGALYSCDVAEHRVGLIR--------SAVERMGFAHV 301
Query: 397 RTFADNST------VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDM--EELKILQDELL 448
+++T D++L+DAPCSGLG+L+K+ D+R+ + LE +EL Q +L
Sbjct: 302 TALCNDATRPNPKLPAADRILVDAPCSGLGILAKKPDIRY-KTLEKARHDELLATQSSIL 360
Query: 449 DAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFS-IDPADGLVPSDFVTKHGFF 507
D A+ L+K GG LVYSTC+IDP ENEE+V AFL RHPEF + PA V +HG
Sbjct: 361 DTAAALLKAGGRLVYSTCTIDPAENEEQVAAFLARHPEFRVVRPAVAFPDGMTVGEHG-A 419
Query: 508 FSDPIKHSLDGAF 520
S P + +DG F
Sbjct: 420 LSVPTRTGMDGFF 432
>gi|449892335|ref|ZP_21788400.1| putative RNA-binding Sun protein [Streptococcus mutans SF12]
gi|449256182|gb|EMC54014.1| putative RNA-binding Sun protein [Streptococcus mutans SF12]
Length = 440
Score = 171 bits (433), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 126/420 (30%), Positives = 218/420 (51%), Gaps = 44/420 (10%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L D L+T++V GT+ + L+ I D + +E + +L + Y+I+ LD
Sbjct: 42 LSQADRSLLTELVYGTLTRKITLEWYIAHYIEDR---NKLETWIYYLLMLSLYQILYLDK 98
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P +A+V+E V LAK R GA LVN +LR+ + K P + R R T
Sbjct: 99 IPQHAIVNEAVDLAKSRNR-GAEKLVNAVLRQFLRQKR------PDITVIKRKNKRYSIT 151
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
YS PVW+V++ G++ AI ++ S +R+ + V D Q+ ++
Sbjct: 152 -YSVPVWLVKKMISQFGEDRAISIL------KSLLVRSKASIRVVNPD---QIEVIAKAT 201
Query: 286 PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAA 345
+ S+ L VK Q + L K+G +QDES+ LV + + ++++D C+A
Sbjct: 202 GAKKSV-LSPCGLVKASGQ-FFDSDLFKQGKITIQDESSQLVAPTLAIKGNETVLDACSA 259
Query: 346 PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT----FAD 401
PGGK +++AS L+ G + A+D+ +L+++ + A + + I+ D R FA
Sbjct: 260 PGGKAVHIASYLTT-GQIIALDLYDHKLKLIKDNADRLKAANYIKPQKLDARKVHKYFAK 318
Query: 402 NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVL 461
++ DK+L+DAPCSG+G++ ++ D+++N+ +D L+ +Q E+LD+ +K GG++
Sbjct: 319 DT---FDKILVDAPCSGIGLIRRKPDIKYNKDSKDFTSLQKIQLEILDSVCQTIKKGGII 375
Query: 462 VYSTCSIDPEENEERVEAFLLRHPEFS------------IDPADGLVPSDFVTKHGFFFS 509
YSTC+I EEN+ ++ FL +HP F +D + P ++T GFF S
Sbjct: 376 TYSTCTIFAEENQMVLKQFLEQHPNFEQVKLNHKKKDIVVDGCLLITPEQYLT-DGFFIS 434
>gi|295096932|emb|CBK86022.1| 16S rRNA m(5)C-967 methyltransferase [Enterobacter cloacae subsp.
cloacae NCTC 9394]
Length = 420
Score = 171 bits (433), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 129/428 (30%), Positives = 208/428 (48%), Gaps = 39/428 (9%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
+ + D+D L+ ++ G +R L+ LI L + S + + ++ +GFY+++
Sbjct: 25 QKVSDKDKALLQELCFGVLRTLSQLEWLINKLM--SRPMSGKQRTVHYLIMVGFYQLLHT 82
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+PP+A + E V A RP L+NG+LR+ +D L +++AR L
Sbjct: 83 RIPPHAALAETVEGAVSIKRPQLKGLINGVLRQFQRQQDE------LLAEFAQSEARFL- 135
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVM-----QLN 279
HP W++ R K Q+ + NN P LR N A L +
Sbjct: 136 ----HPEWLLNRLKKAYPQQWQ-DIADANNQRPPMWLRVNRNHHTRDAWLALLEEAGMSG 190
Query: 280 LLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSI 339
P + L + G + EG VQD SA + ++P+ G+ I
Sbjct: 191 FTHAAYPDAVRLASPALVHALPGFE---------EGWLTVQDASAQGCMTWLEPKDGEQI 241
Query: 340 VDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF 399
+D CAAPGGKT ++ ++ Q V A+D+++ RL + + K + + ++ D R
Sbjct: 242 LDLCAAPGGKTTHILE-VAPQASVMAVDVDEQRLSRVYDNLKRLGMKAQVK--QGDGRKP 298
Query: 400 AD-NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPG 458
AD + D++LLDAPCS GV+ + D++W RR D++EL LQ E+LDA +KPG
Sbjct: 299 ADWCGDTRFDRILLDAPCSATGVIRRHPDIKWLRRDRDIKELAQLQSEILDAIWPHLKPG 358
Query: 459 GVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDG 518
G LVY+TCS+ PEEN +++ AFL R P+ ++ D P +H + P DG
Sbjct: 359 GTLVYATCSVLPEENSQQIAAFLKRTPDATLH--DTGTP-----EHPGLQNLPGAEEGDG 411
Query: 519 AFAARLVR 526
F A+L++
Sbjct: 412 FFYAKLIK 419
>gi|403046860|ref|ZP_10902329.1| tRNA and rRNA cytosine-C5-methylase [Staphylococcus sp. OJ82]
gi|402763556|gb|EJX17649.1| tRNA and rRNA cytosine-C5-methylase [Staphylococcus sp. OJ82]
Length = 437
Score = 171 bits (433), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 122/430 (28%), Positives = 224/430 (52%), Gaps = 62/430 (14%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD 165
+L+ D L T++V GT++ + LD+L+ + ++ + Q+L + Y+ V LD
Sbjct: 37 ELNRADKGLFTELVYGTLKRKFSLDYLLKPFVQ-----TKLKGWVRQLLWMSIYQYVYLD 91
Query: 166 -MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P +A+++E V +AK P GN+VNGILR ++ + LP +D+ + +A
Sbjct: 92 KVPEHAIINEAVEIAKRKGGPHNGNVVNGILRNIM----RSDLPDFTEITDDK---KRIA 144
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQ 284
YS P W+V W+ + G E+ A + +T+ +++NL ++
Sbjct: 145 IEYSLPKWLVDHWSTHFGIEKT---------------EAIAESFLTKVATTVRVNLTRIS 189
Query: 285 VPHELS-LHLDEFI-----RVKTGL----QNVIQAGLLKEGLCAVQDESAGLVVAVVDPQ 334
+ + L D++I + T L + +I++ + K+GL ++QD+S+ V ++
Sbjct: 190 IEDVIRRLVEDDYIVEQDNEIDTCLHISGKPIIESRMFKDGLVSIQDKSSMFVAELMGLN 249
Query: 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHA 394
G ++D C+APGGK ++A L+G G + A DI + ++ +++ K ++ +
Sbjct: 250 EGDEVLDACSAPGGKACHIAEVLNGTGHIDATDIYEHKIDLIDFNIKKLRL--------S 301
Query: 395 DLRTFADNSTVKC----DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDA 450
++ F ++T K DK+L+DAPCSGLGVL + ++++ + + ++ L +Q E+L+
Sbjct: 302 NISAFEHDATEKYGKVYDKILVDAPCSGLGVLRHKPEIKYEQSQQSIQSLVEIQLEILNN 361
Query: 451 ASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSID----PADG-------LVPSD 499
+KPGG L+YSTC+I+ ENE V FL + +F D P G ++P D
Sbjct: 362 VKDNLKPGGTLIYSTCTIEQLENENVVYTFLKDNKDFEFDTFEHPITGEKVKTMQVLPQD 421
Query: 500 FVTKHGFFFS 509
F GFF +
Sbjct: 422 F-NSDGFFIT 430
>gi|425736791|ref|ZP_18855067.1| 16S rRNA methyltransferase B [Staphylococcus massiliensis S46]
gi|425483263|gb|EKU50415.1| 16S rRNA methyltransferase B [Staphylococcus massiliensis S46]
Length = 434
Score = 171 bits (433), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 125/420 (29%), Positives = 217/420 (51%), Gaps = 44/420 (10%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L D L T++V GT+ R LD+ + + ++ + Q+L + Y+ V L+
Sbjct: 35 LSSSDRGLYTELVYGTLARRYALDYFL-----KPHVNTRIKRWVRQLLWMSIYQYVYLNK 89
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLV--LLKDNNSLPLPKLEGNDRAQARAL 223
+P +A+++E V +AK GN+VN ILR L+ L + + PK + +
Sbjct: 90 IPNHAIINEAVEIAKARGGRHQGNVVNAILRSLMNHELASFDEIKDPK---------KRI 140
Query: 224 ATIYSHPVWMVRRWTKYLGQEEA---IKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
+ YS P+W++ WT + G ++ K M+ S P ++R N + +T ++ QL
Sbjct: 141 SIEYSIPLWIIEHWTTHHGLDQTRDIAKAML--QSAPQ-TVRVNETR-ITPSEAKAQLET 196
Query: 281 LKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIV 340
QV E L E + V + ++ +GL K G ++QD+S+ V V+ P+ G +I+
Sbjct: 197 EGYQV--ETCDELPECLHVSG--KPIMTSGLFKAGKVSIQDKSSMFVANVLQPETGDAIL 252
Query: 341 DCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 400
D C+APGGK ++ L+ G V A D++ +++++ K + ++ H + +
Sbjct: 253 DTCSAPGGKACHIGEKLNQTGHVLASDVHAHKMKLIEHNVKKLGLKNIEAIQHDATQPY- 311
Query: 401 DNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGV 460
N T DK+L+DAPCSGLGV+ + ++++ + + L +Q ++L AS +KPGG
Sbjct: 312 -NQTF--DKILVDAPCSGLGVMRHKPEIKYRETKDSVLSLVDIQLDILTNASKHLKPGGT 368
Query: 461 LVYSTCSIDPEENEERVEAFLLRHPEFSIDPADG-----------LVPSDFVTKHGFFFS 509
LVYSTC+I+ ENE + FL ++PEF P + ++P DF + GFF +
Sbjct: 369 LVYSTCTIEQMENENVIYTFLKQNPEFEFLPFEDFKSGEPVKTLQILPQDFNSD-GFFIT 427
>gi|418965584|ref|ZP_13517349.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
constellatus subsp. constellatus SK53]
gi|423069088|ref|ZP_17057876.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
intermedius F0395]
gi|355365488|gb|EHG13211.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
intermedius F0395]
gi|383342076|gb|EID20315.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
constellatus subsp. constellatus SK53]
Length = 437
Score = 171 bits (433), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 123/383 (32%), Positives = 202/383 (52%), Gaps = 25/383 (6%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L D RLVT+IV GT+ + L+ + + D + S L +L + Y++ LD
Sbjct: 39 LSSVDKRLVTEIVYGTVARKMTLEWYLSHVVEDREKLDSW---LYILLLMSLYQLQYLDK 95
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P +AVV+E V L+K A + G+ VN +LR+L L+D + N R +
Sbjct: 96 IPTHAVVNEAVELSK-ARKKGSEKFVNAVLRRL--LRDGVADIASIKRKNKRYSIQ---- 148
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
YS PVW+V+ + G++ A+ + S LR ++ V ADL + L +L
Sbjct: 149 -YSLPVWLVKVIIEEYGEKRALAIF------ESLFLR--NKASVRVADLSRKEELKQLLQ 199
Query: 286 PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAA 345
+ L ++ L +EG+ +QDES+ LV +D Q + ++D C+A
Sbjct: 200 AEDSLLAPSALVKNHGHFAG---HALFEEGVITIQDESSQLVAPTLDLQGDEKVLDACSA 256
Query: 346 PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETA-KLHQVNSVIRTIHADLRTFADNST 404
PGGKT+++AS L+ G V A+D+ +L ++ E A +L + VI R F
Sbjct: 257 PGGKTMHIASYLT-TGQVTALDLYDHKLTLIEENAQRLGLADRVITKKLDARRVFETFGV 315
Query: 405 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464
DK+L+DAPCSG+G++ ++ D+++N++ D L+ +Q E+LD+ ++ GG++ YS
Sbjct: 316 DAFDKILVDAPCSGIGLIRRKPDIKYNKKNADFISLQKIQLEILDSVCQSLRKGGIITYS 375
Query: 465 TCSIDPEENEERVEAFLLRHPEF 487
TC+I +EN + VE FL HP F
Sbjct: 376 TCTIVSQENFQVVEQFLAAHPNF 398
>gi|418561429|ref|ZP_13125920.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21262]
gi|371977640|gb|EHO94904.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21262]
Length = 435
Score = 171 bits (433), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 130/428 (30%), Positives = 214/428 (50%), Gaps = 58/428 (13%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTF--SSMEPLLLQILRIGFYEIVK 163
+L+ D L T+IV GT++ + LD + K F + ++ + Q+L + Y+ V
Sbjct: 35 ELNAMDKALFTEIVYGTVKRKYTLDFYL-------KPFVKTKIKAWVRQLLWMSIYQYVY 87
Query: 164 LD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVL--LKDNNSLPLPKLEGNDRAQA 220
LD +P +A+++E V +AK GN+VNGILR ++ L D N + PK
Sbjct: 88 LDKVPNHAIINEAVEIAKERGGYHNGNVVNGILRTMMRSDLPDFNEIADPK--------- 138
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADL-----V 275
+ +A YS P W++ W + G EE ++ + ++RAN +TRA L
Sbjct: 139 KRMAIEYSMPKWIIDHWATHFGLEETETILQSFLETTTTTVRAN----LTRASLDDIIEK 194
Query: 276 MQLNLLKLQVPHEL--SLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDP 333
+Q ++ H+L LH+ G Q +I + K+G ++QD+S+ V +++
Sbjct: 195 LQDEGYDVEKDHDLPYCLHI--------GGQPIIHSRSFKDGFVSIQDKSSMFVAHIMNV 246
Query: 334 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILN-ETAKLHQVNSVIRTI 392
++D C+APGGK ++A L +G V A DI+ ++ ++N KL N I+
Sbjct: 247 DRHDHVLDACSAPGGKACHIAEVLMPEGQVDASDIHDHKIDLINFNIKKLRLTN--IKAF 304
Query: 393 HADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAAS 452
D D + DK+L+DAPCSGLGV+ + ++++ + + +E L LQ E+L+
Sbjct: 305 QHDATKPYDKT---YDKILVDAPCSGLGVMRHKPEIKYTQSKQHIESLVDLQLEILENVK 361
Query: 453 LLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADG-----------LVPSDFV 501
VK GG +VYSTC+I+ ENE + FL + F +P ++P DF
Sbjct: 362 NNVKIGGEIVYSTCTIEQLENENVIYTFLKNNKNFEFEPFQHPITGELVKTLQIMPQDF- 420
Query: 502 TKHGFFFS 509
GFF S
Sbjct: 421 NSDGFFIS 428
>gi|281412717|ref|YP_003346796.1| sun protein [Thermotoga naphthophila RKU-10]
gi|281373820|gb|ADA67382.1| sun protein [Thermotoga naphthophila RKU-10]
Length = 431
Score = 171 bits (433), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 117/380 (30%), Positives = 198/380 (52%), Gaps = 30/380 (7%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
LDD+D R ++V G +R LD I L + + P + LR+G Y+++ ++
Sbjct: 34 LDDKDRRFFKELVWGVVRKEELLDWYINQLLKKK----DIPPAVRVALRMGAYQLLFMNS 89
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P YA V E V+L K LVN +LR+L ++P PK L
Sbjct: 90 VPDYAAVSETVKLVK---SENFKKLVNAVLRRL------RTVPEPK----------ELHL 130
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQ- 284
IYSHP W+V W +L +E +++M WN LR NS T+ +++ L +
Sbjct: 131 IYSHPEWIVNYWRSFLPEEAVLRIMKWNQEPLPVMLRVNSL-ATTKEEVIKILAEEGTEA 189
Query: 285 VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 344
VP + H + V+ ++ + ++K+GL +VQ ES+ LV ++ +PG ++D CA
Sbjct: 190 VPGK---HAPFSLVVRKLGISMNDSRVIKDGLASVQGESSQLVPFFMELKPGLRVLDTCA 246
Query: 345 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNST 404
APGGKT +A + QG + A+DI++ + +++ + AK +++S I T AD+ +
Sbjct: 247 APGGKTTAIAELMKDQGKILAVDISREKTQLVEKHAKRLKLSS-IETKIADVERLTEYVQ 305
Query: 405 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464
D++L+DAPC+ LG ++ ED ++ +Q ++ A L++ GG+L+YS
Sbjct: 306 DTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKFSEIQLRMVQQAWQLLEKGGILLYS 365
Query: 465 TCSIDPEENEERVEAFLLRH 484
TC++ EEN E V+ F+
Sbjct: 366 TCTVTKEENTEVVKRFVYEQ 385
>gi|421876595|ref|ZP_16308151.1| Putative rRNA methylase [Leuconostoc citreum LBAE C10]
gi|372557672|emb|CCF24271.1| Putative rRNA methylase [Leuconostoc citreum LBAE C10]
Length = 450
Score = 171 bits (433), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 125/428 (29%), Positives = 218/428 (50%), Gaps = 34/428 (7%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L+D D RL+T +V G I+ R D+ + +K +EP + ++L +++ LD
Sbjct: 41 LNDSDKRLLTTLVYGVIQHRLTFDYWLTPFIKQKK----IEPWVRELLYTALFQLQYLDK 96
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVL--LKDNNSLPLPKLEGNDRAQARAL 223
+P +A+ +E++ +AK G V IL + L D N++ P + L
Sbjct: 97 IPQHAIFNESIEVAKTLGHIGTAKFVTAILHNISRQGLPDINAIQNP---------IQRL 147
Query: 224 ATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSR----KGVTRADLVMQLN 279
+ S PVW++ + G+ + +++ N P+ ++R N+ + V +A L
Sbjct: 148 SVEASLPVWLIETLVEQNGEAKTRQIIGSINDAPAQAIRVNTALSTDEAVEQALLDEHFT 207
Query: 280 LLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGL-VVAVVDPQPGQS 338
+K +V + V TG +V + ++GL +QDESA L V A+ ++
Sbjct: 208 FVKSKVA--------DHAYVVTG-GHVAGSKAYQDGLLTLQDESAMLPVEALQITTQVKT 258
Query: 339 IVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT 398
++D AAPGGKT +A ++ + A+DI+ ++R++ AK V+ I D R
Sbjct: 259 VLDAAAAPGGKTTQIAQYIADDATIIALDIHAHKIRLIEANAKRLHVSDKITAQVLDARQ 318
Query: 399 FADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPG 458
A+ T K D++L+DAPCSG G+L ++ ++R+++ LED+ L LQ E+LD+ S V
Sbjct: 319 TANQLTTKFDRILVDAPCSGFGLLRRKPEIRYDKTLEDVMNLASLQGEILDSVSQNVADN 378
Query: 459 GVLVYSTCSIDPEENEERVEAFLLRHPEFSIDP--ADGLVPSDFVTKHGFFFSDPIKHSL 516
G++VYSTC+I +EN++ + FL +H +F + P + + SD + P +
Sbjct: 379 GMIVYSTCTILRQENDDVIARFLSKHTDFELVPTMTNKALKSD--RQETVLHIYPNDYHT 436
Query: 517 DGAFAARL 524
DG F A L
Sbjct: 437 DGFFVATL 444
>gi|365834673|ref|ZP_09376116.1| ribosomal RNA small subunit methyltransferase B [Hafnia alvei ATCC
51873]
gi|364568786|gb|EHM46424.1| ribosomal RNA small subunit methyltransferase B [Hafnia alvei ATCC
51873]
Length = 430
Score = 171 bits (433), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 131/425 (30%), Positives = 211/425 (49%), Gaps = 44/425 (10%)
Query: 104 TKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVK 163
+K++ ++D L+ ++ G +R L+ I L K + + L ++ +G Y++V
Sbjct: 34 SKEVSEKDRALLQELCFGVLRVLPQLEWYIQQLM--AKVLTGKQRPLHYLIMVGIYQLVY 91
Query: 164 LDMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARAL 223
+PP+A + E V A RP L+NG+LR+ +D + +RAQ
Sbjct: 92 TRIPPHAALAETVNGAVALKRPQLKGLINGVLRQFQRQED---------QLKERAQNNEC 142
Query: 224 ATIYSHPVWMVRRWTK-YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLK 282
+ HP W+++R + Y Q E+I + NN P LR N R TR + + L +
Sbjct: 143 R--FLHPSWLLKRLQQAYPQQWESI--VDANNQRPPMWLRVN-RLHHTRDEYLALLAKAE 197
Query: 283 L------QVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPG 336
+ Q P + L + G + +G VQD SA V ++DPQ G
Sbjct: 198 INAFAHPQFPDAICLEEASPVGRLPGFE---------QGWVTVQDASAQHCVDLLDPQNG 248
Query: 337 QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADL 396
+ I+D C APGGKT ++ + + V A+D+++ RL+ + E LH++ D
Sbjct: 249 EQILDLCCAPGGKTTHILEA-APKAHVLAVDVDENRLKRVKEN--LHRLQQQAEVKCGDG 305
Query: 397 RTFADN--STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLL 454
R + +N + D++LLDAPCS GV+ + D++W RR D+ EL LQ E+++A
Sbjct: 306 R-YPENWCGDRQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAALQKEIIEAIWPH 364
Query: 455 VKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFS-IDPADGLVPSDFVTKH-----GFFF 508
+K GGV+VY+TCS+ PEEN +++ FL RHPE + D P H GFF+
Sbjct: 365 LKSGGVMVYATCSVLPEENAQQMREFLARHPEAQLVTTGDQENPGQQHLPHAQDGDGFFY 424
Query: 509 SDPIK 513
+ IK
Sbjct: 425 AKLIK 429
>gi|339634054|ref|YP_004725695.1| 16S rRNA methyltransferase B [Weissella koreensis KACC 15510]
gi|420161397|ref|ZP_14668162.1| RNA methyltransferase [Weissella koreensis KCTC 3621]
gi|420161534|ref|ZP_14668298.1| RNA methyltransferase [Weissella koreensis KCTC 3621]
gi|338853850|gb|AEJ23016.1| 16S rRNA methyltransferase B [Weissella koreensis KACC 15510]
gi|394745072|gb|EJF33968.1| RNA methyltransferase [Weissella koreensis KCTC 3621]
gi|394745374|gb|EJF34258.1| RNA methyltransferase [Weissella koreensis KCTC 3621]
Length = 452
Score = 171 bits (433), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 143/479 (29%), Positives = 240/479 (50%), Gaps = 53/479 (11%)
Query: 56 EVSPHRAVSAVRLMRIQFGGAFADL-LNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRL 114
E S RA+S L R++ GA+++L LN+ K S L++RD+ L
Sbjct: 13 EQSNARALSVRVLERVK-DGAYSNLQLNQLAKAS-----------------KLEERDIHL 54
Query: 115 VTDIVGGTIRWRRYLDHLICLLCHDEKTF--SSMEPLLLQILRIGFYEIVKLD-MPPYAV 171
+T IV G I+ R L++ + K F +++P + ++L I Y++ LD +P +A+
Sbjct: 55 LTTIVYGVIQHRLTLEYWL-------KPFLRGNVDPFVKELLMISVYQMQYLDKIPQHAI 107
Query: 172 VDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPV 231
DE +++AK G V G+L L + LP + Q A++ PV
Sbjct: 108 FDEAIQIAKRRGHDGIRKYVTGVLHSL----ERQGLPEFTTIKDPIEQLSIEASL---PV 160
Query: 232 WMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSL 291
W++++ +G E+ +K+ N P+ S R N R T+ + L +V E S
Sbjct: 161 WLLKQLESEVGHEKMVKIARSINDAPAQSARIN-RAVTTQEQVTTVLEAEGFEV--EASK 217
Query: 292 HLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTL 351
E +R+K G +V + ++GL +QDESA L+V ++ P ++D AAPGGKT
Sbjct: 218 VTPEALRIKHG--HVASSKAFEDGLLTLQDESAMLMVPNLNLTPSMKVLDAAAAPGGKTT 275
Query: 352 YMASCLSGQ--GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR----TFADNSTV 405
+AS L + G+V A+DI+ +++++ E A+ V+ + D R F D +
Sbjct: 276 QIASYLDPKQGGIVEALDIHPHKIKLIEENAQRLHVSDQVHAQELDARKVDEQFDDET-- 333
Query: 406 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465
D +L+DAPCSG G+L ++ ++R+ + D +L +Q ++L+A + +K GG LVY T
Sbjct: 334 -FDAILVDAPCSGFGLLRRKPEIRYEKSYADSMKLHQIQLDMLNAVAPKLKKGGNLVYGT 392
Query: 466 CSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARL 524
C+I EN+ V+ FL ++ ++ + P G +P F P DG F A L
Sbjct: 393 CTILEIENDAVVQDFLEQNSDYELVPTIGPLPQRSQLTMQVF---PDDFDSDGFFVATL 448
>gi|238758791|ref|ZP_04619965.1| Ribosomal RNA small subunit methyltransferase B [Yersinia aldovae
ATCC 35236]
gi|238703088|gb|EEP95631.1| Ribosomal RNA small subunit methyltransferase B [Yersinia aldovae
ATCC 35236]
Length = 429
Score = 171 bits (433), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 130/419 (31%), Positives = 215/419 (51%), Gaps = 34/419 (8%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
K++ D+D L+ ++ G +R L+ I L + + + + ++ +G Y+++
Sbjct: 34 KNISDKDRALLQELCFGALRVLPQLEWCIQQLM--ARPLTGKQRIFHYLIMVGLYQLIYT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+PP+A + E V A RP L+NG+LR+ + L + ND
Sbjct: 92 RIPPHAALAETVEGATALKRPQLKGLINGVLRQF---QRQQVELLERAANND-------- 140
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRAD---LVMQLNLL 281
+ Y HP W++ R K ++ +++ NN P LR SR +R + L+ Q N+
Sbjct: 141 SRYLHPSWLLAR-IKQAYPDQWQQILEANNQKPPMWLRV-SRLHHSRNEYLELLKQANID 198
Query: 282 KLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVD 341
L PH+ + +R+ T G + G VQD SA V ++DPQ G+ I+D
Sbjct: 199 AL--PHDF---YSDAVRLITPCAVNDLPGF-ELGWVTVQDASAQGCVDLLDPQDGEQILD 252
Query: 342 CCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD 401
CAAPGGKT ++ + + V AIDI++ RL + E + +++V+R D RT +
Sbjct: 253 LCAAPGGKTTHILEA-APKAHVLAIDIDEQRLSRVKENLQRLNLHAVVRV--GDGRTPDE 309
Query: 402 -NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGV 460
+ D++LLDAPCS GV+ + D++W RR D+ +L LQ E+++A +K GGV
Sbjct: 310 WCGDQQFDRILLDAPCSATGVIRRHPDIKWLRRDSDIADLAKLQSEIVEAIWPKLKKGGV 369
Query: 461 LVYSTCSIDPEENEERVEAFLLRHPEFS-IDPADGLVPSDFVTKH-----GFFFSDPIK 513
+VY+TCSI P+EN++++ AFL RH E ++ + P H GFF++ IK
Sbjct: 370 MVYATCSILPDENQQQIAAFLQRHSEAELVETGTAVAPGKQNLPHPEDGDGFFYAKLIK 428
>gi|266624677|ref|ZP_06117612.1| ribosomal RNA small subunit methyltransferase B [Clostridium
hathewayi DSM 13479]
gi|288863456|gb|EFC95754.1| ribosomal RNA small subunit methyltransferase B [Clostridium
hathewayi DSM 13479]
Length = 442
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 125/420 (29%), Positives = 198/420 (47%), Gaps = 25/420 (5%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
LD ++ ++ IV GT+ + LD++I + M+P++ +LR+ Y+I+ +D
Sbjct: 39 LDKQERAFISRIVEGTVEYTLQLDYVIN--SYSSVKVKKMKPVIRTLLRMSVYQILYMDR 96
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P AV +E V+LA+ G VNG+LR + K+ P +D +
Sbjct: 97 VPDSAVCNEAVKLAQKRKFTGLKGFVNGVLRGISRNKEQLKWP------DDSVR------ 144
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
YS P W++ W G+E + M PS R R + RA ++ LK Q
Sbjct: 145 -YSMPSWILDMWKDTYGEEITVS-MAKAFLKPS---RTAVRCNLNRASKQEIMDSLKSQG 199
Query: 286 PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAA 345
L E + + + GL +VQD S+ V + DP+ G +D C A
Sbjct: 200 VTVEETPLSETVLYLSKYDYLESLDAFASGLISVQDMSSSFVGEIADPKEGDVCIDVCGA 259
Query: 346 PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS-T 404
PGGK+L++A L G G+V D+ + ++ ++ E ++ +H L D +
Sbjct: 260 PGGKSLHIADKLKGTGMVTVRDLTEQKVALIEENIARSGFTNIRAEVHDAL--VPDQAWE 317
Query: 405 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464
+ D VL D PCSGLG++ ++ D+++ +E + EL LQ E+L VKPGG L+YS
Sbjct: 318 GRADIVLADLPCSGLGIIGRKPDIKYRMTMEQLAELAALQREILSVVQSYVKPGGKLIYS 377
Query: 465 TCSIDPEENEERVEAFLLRHP--EFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAA 522
TC+ID +ENEE FL P +++ G + K G P H DG F A
Sbjct: 378 TCTIDSQENEENAAWFLENFPFDAVNLEGKLGETLNAASMKSGMIQLLPGIHPCDGFFIA 437
>gi|291619144|ref|YP_003521886.1| RsmB [Pantoea ananatis LMG 20103]
gi|291154174|gb|ADD78758.1| RsmB [Pantoea ananatis LMG 20103]
Length = 433
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 130/436 (29%), Positives = 212/436 (48%), Gaps = 64/436 (14%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
K L D+D LV +I G +R L+ LI L E+ + + L ++ +G Y+++
Sbjct: 34 KKLSDKDAALVQEICFGVLRTLPQLEALIGKLM--ERPLTGKQRTLHFLIMVGLYQLLYT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P +A + E V A+V R L+NG+LR+ R Q LA
Sbjct: 92 RVPAHAALAETVAGAEVLKRANLKGLINGVLRQF-----------------QRQQEALLA 134
Query: 225 TI------YSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQL 278
+I + HP W++ R + E+ +++ NN P LR N R+ +R + +L
Sbjct: 135 SIQDGPQRHLHPGWLLNR-LQQAWPEQWQQIVEANNQRPPMWLRVN-RQHHSRDSWLARL 192
Query: 279 NL------LKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVD 332
+ VP L L + + G + +G VQD SA +++
Sbjct: 193 TAEEKSAAVAQDVPEALRLTAPAPVTLLPGFE---------QGWFTVQDLSAQRCALLLE 243
Query: 333 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNE-------TAKLHQV 385
P+ G+ I+D CAAPGGKT ++ ++ + V A+D++ RL+ +NE TA++ Q
Sbjct: 244 PKNGEQILDLCAAPGGKTTHILE-IAPEAQVLAVDVDAQRLKRVNENLTRLGMTAEVKQG 302
Query: 386 NSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQD 445
+ D R F D++LLDAPCS GV+ + D++W RR D+ EL LQ
Sbjct: 303 DGRTPQQWCDQRQF--------DRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAALQR 354
Query: 446 ELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPE-----FSIDPADGL-VPSD 499
E+LDA L+KPGG ++Y+TCS+ P+EN+ ++ F+ RH + S P +G V +
Sbjct: 355 EILDATWPLLKPGGTMIYATCSVLPDENQRQISEFIERHADAEAVSLSGAPLNGWQVFPE 414
Query: 500 FVTKHGFFFSDPIKHS 515
GFF++ +K +
Sbjct: 415 AEGGDGFFYAKLVKRT 430
>gi|225018695|ref|ZP_03707887.1| hypothetical protein CLOSTMETH_02645 [Clostridium methylpentosum
DSM 5476]
gi|224948423|gb|EEG29632.1| hypothetical protein CLOSTMETH_02645 [Clostridium methylpentosum
DSM 5476]
Length = 441
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 132/430 (30%), Positives = 213/430 (49%), Gaps = 39/430 (9%)
Query: 104 TKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLL-----QILRIGF 158
+ L RD + G + + LD++I ++++M+P + ILR+G
Sbjct: 34 SSSLSPRDRDFAAKLFYGVLETKITLDYIIA-------SYATMKPEKISSDVRNILRLGL 86
Query: 159 YEIVKLDMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRA 218
Y+I LD+ +A V+E+V L K+ + A VN ILR L+D ++PLP+ + ++R
Sbjct: 87 YQIKYLDLEDFAAVNESVNLVKLRGKKSASGFVNAILR--AFLRDGKNIPLPE-DPDERL 143
Query: 219 QARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRK--GVTRADLVM 276
R +S PVW+VR + G+E A +++ P +LR N+ K T L+
Sbjct: 144 SVR-----FSCPVWLVRSFVGEYGRETAERILESQLGRPPLTLRVNTLKTSAETLCALLQ 198
Query: 277 QLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPG 336
Q + VPH E + G + EGL VQD S+ L V
Sbjct: 199 QEGIEA--VPHPQEQTCVEVL----GGGALTGTKAFAEGLFHVQDISSQLCARTVASYAP 252
Query: 337 QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADL 396
++++D CAAPGGKT +A L + A D++K R+ ++ + A + SV + +D
Sbjct: 253 RTLLDVCAAPGGKTFTIAEELGDAAEITACDLHKKRVGLIKQGAARLGLCSV-DAVESDA 311
Query: 397 RTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVK 456
A++ + D VL D PCSG GV+ ++ ++++ + E ++ L +Q +L ++ VK
Sbjct: 312 SK-ANDRFGQFDAVLCDVPCSGFGVIRRKPEIKYKPQ-ESLQGLPAIQGNILQTSASYVK 369
Query: 457 PGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGL----VPSDFVTKHGFFFSDPI 512
GG+L+YSTC+I ENE+ V+ FL R+P F G VP D V + F P
Sbjct: 370 EGGMLIYSTCTIAKRENEQVVDEFLRRNPAFVPAKLPGFLHQWVP-DAVNRVTFL---PG 425
Query: 513 KHSLDGAFAA 522
H+ DG F A
Sbjct: 426 VHNSDGFFLA 435
>gi|148270410|ref|YP_001244870.1| sun protein [Thermotoga petrophila RKU-1]
gi|147735954|gb|ABQ47294.1| sun protein [Thermotoga petrophila RKU-1]
Length = 431
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 117/377 (31%), Positives = 198/377 (52%), Gaps = 30/377 (7%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
LDD+D R ++V G +R LD I L + + P + LR+G Y+++ ++
Sbjct: 34 LDDKDRRFFKELVWGVVRKEELLDWYINQLLKKK----DIPPAVRVALRMGAYQLLFMNS 89
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P YA V E V+L K LVN +LR+L ++P PK L
Sbjct: 90 VPDYAAVSETVKLVK---NENFKKLVNAVLRRL------RTVPEPK----------ELHL 130
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQ- 284
IYSHP W+V W +L +E +++M WN LR NS T+ +++ L +
Sbjct: 131 IYSHPEWIVNYWRSFLPEEAVLRIMKWNQEPLPVMLRVNSL-ATTKEEVIKILAEEGTEA 189
Query: 285 VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 344
VP + H + V+ ++ + ++K+GL +VQ ES+ LV ++ +PG ++D CA
Sbjct: 190 VPGK---HAPFSLVVRKLGISMNDSRVIKDGLASVQGESSQLVPFFMELKPGLRVLDTCA 246
Query: 345 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNST 404
APGGKT +A + QG + A+DI++ + +++ + AK +++S I T AD+ +
Sbjct: 247 APGGKTTAIAELVKDQGKILAVDISREKTQLVEKHAKRLKLSS-IETKIADVERLTEYVQ 305
Query: 405 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464
D++L+DAPC+ LG ++ ED ++ +Q ++ A L++ GG+L+YS
Sbjct: 306 DTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKFSEIQLRMVQQAWQLLEKGGILLYS 365
Query: 465 TCSIDPEENEERVEAFL 481
TC++ EEN E V+ F+
Sbjct: 366 TCTVTKEENTEVVKRFV 382
>gi|386077676|ref|YP_005991201.1| ribosomal RNA small subunit methyltransferase B RsmB [Pantoea
ananatis PA13]
gi|354986857|gb|AER30981.1| ribosomal RNA small subunit methyltransferase B RsmB [Pantoea
ananatis PA13]
Length = 433
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 130/436 (29%), Positives = 212/436 (48%), Gaps = 64/436 (14%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
K L D+D LV +I G +R L+ LI L E+ + + L ++ +G Y+++
Sbjct: 34 KKLSDKDAALVQEICFGVLRTLPQLEALIGKLM--ERPLTGKQRTLHFLIMVGLYQLLYT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P +A + E V A+V R L+NG+LR+ R Q LA
Sbjct: 92 RVPAHAALAETVAGAEVLKRANLKGLINGVLRQF-----------------QRQQEALLA 134
Query: 225 TI------YSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQL 278
+I + HP W++ R + E+ +++ NN P LR N R+ +R + +L
Sbjct: 135 SIQDGPQRHLHPGWLLNR-LQQAWPEQWQQIVEANNQRPPMWLRVN-RQHHSRDSWLARL 192
Query: 279 NL------LKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVD 332
+ VP L L + + G + +G VQD SA +++
Sbjct: 193 TAEEKSAAVAQDVPEALRLAAPAPVTLLPGFE---------QGWFTVQDLSAQRCALLLE 243
Query: 333 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNE-------TAKLHQV 385
P+ G+ I+D CAAPGGKT ++ ++ + V A+D++ RL+ +NE TA++ Q
Sbjct: 244 PKNGEQILDLCAAPGGKTTHILE-IAPEAQVLAVDVDAQRLKRVNENLTRLGMTAEVKQG 302
Query: 386 NSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQD 445
+ D R F D++LLDAPCS GV+ + D++W RR D+ EL LQ
Sbjct: 303 DGRTPQQWCDQRQF--------DRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAALQR 354
Query: 446 ELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPE-----FSIDPADGL-VPSD 499
E+LDA L+KPGG ++Y+TCS+ P+EN+ ++ F+ RH + S P +G V +
Sbjct: 355 EILDATWPLLKPGGTMIYATCSVLPDENQRQISEFIERHADAEAVSLSGAPLNGWQVFPE 414
Query: 500 FVTKHGFFFSDPIKHS 515
GFF++ +K +
Sbjct: 415 AEGGDGFFYAKLVKRT 430
>gi|375088919|ref|ZP_09735256.1| ribosomal RNA small subunit methyltransferase B [Dolosigranulum
pigrum ATCC 51524]
gi|374561086|gb|EHR32435.1| ribosomal RNA small subunit methyltransferase B [Dolosigranulum
pigrum ATCC 51524]
Length = 446
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 130/428 (30%), Positives = 220/428 (51%), Gaps = 46/428 (10%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
+DL ++ L+T++V G ++ +R +D+ + K ++ + Q+LR+ Y++V L
Sbjct: 35 EDLSPQERALLTELVYGVMQNKRLIDYYLSKFL---KPSQKLDGWVRQLLRVAVYQLVFL 91
Query: 165 D-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARAL 223
D +P YA ++E V+ AK G LVNG+LR + + PL L+ ++ +
Sbjct: 92 DQIPTYAAINEAVQYAKRRGHRGISGLVNGVLRNI------DRHPLKSLD-EITSKIERI 144
Query: 224 ATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKL 283
T YS P W+V++ G+E + N S+R N+ + ++R +++ QL +
Sbjct: 145 GTQYSLPDWLVKQLVADYGEETTEAIAQSFNKRAHVSVRVNTNQ-LSRDEVLEQLQVAGF 203
Query: 284 QVPH-ELSLHLDEFIRVKTGLQNVIQAGL------LKEGLCAVQDESAGLVVAVVDPQPG 336
+V ELS GL +IQ GL ++G +QDE+A LV ++ P
Sbjct: 204 EVTRSELS---------PVGL--IIQGGLPTDTELFQQGAITIQDEAAMLVAPALEVTPS 252
Query: 337 QSIVDCCAAPGGKTLYMASCL--SGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHA 394
+ D CAAPGGK+ ++A+ L + G + + DI+ +L ++ + + + R
Sbjct: 253 DYVWDACAAPGGKSAHIATYLDNASGGQLLSTDIHPHKLSLIQASLDRQKQDDKSRVEQL 312
Query: 395 DLR-TFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASL 453
D R A + + DK+L+DAPCSG+G+L ++ D+R+ + + L Q E+L AA+
Sbjct: 313 DAREVVAQYGSEQFDKILVDAPCSGVGLLRRKPDIRFQKSAYTSQALAQSQSEILAAAAE 372
Query: 454 LVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSID---------PADGLV---PSDFV 501
+K GG LVY+TC+I EENE +EAFL +H F + DG+V P F
Sbjct: 373 ALKVGGRLVYATCTILKEENEAVIEAFLKQHSNFQLCRIPLEQEALANDGMVTILPHQFE 432
Query: 502 TKHGFFFS 509
+ GFF +
Sbjct: 433 SD-GFFIA 439
>gi|384547461|ref|YP_005736714.1| RNA-binding protein [Staphylococcus aureus subsp. aureus ED133]
gi|387780326|ref|YP_005755124.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus LGA251]
gi|417903350|ref|ZP_12547197.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21269]
gi|298694510|gb|ADI97732.1| probable RNA-binding protein [Staphylococcus aureus subsp. aureus
ED133]
gi|341849971|gb|EGS91104.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21269]
gi|344177428|emb|CCC87896.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus LGA251]
Length = 435
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 131/428 (30%), Positives = 214/428 (50%), Gaps = 58/428 (13%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTF--SSMEPLLLQILRIGFYEIVK 163
+L+ D L T+IV GT++ + LD + K F + ++ + Q+L + Y+ V
Sbjct: 35 ELNVMDKALFTEIVYGTVKRKYTLDFYL-------KPFVKTKIKAWVRQLLWMSIYQYVY 87
Query: 164 LD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVL--LKDNNSLPLPKLEGNDRAQA 220
LD +P +A+++E V +AK GN+VNGILR ++ L D N + PK
Sbjct: 88 LDKVPNHAIINEAVEIAKERGGYHNGNVVNGILRTMMRSDLPDFNEIADPK--------- 138
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADL-----V 275
+ +A YS P W++ W + G EE ++ S S+RAN +TRA L
Sbjct: 139 KRMAIEYSMPKWIIDHWATHYGLEETETILQSFLETTSTSVRAN----LTRASLDDIIEK 194
Query: 276 MQLNLLKLQVPHEL--SLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDP 333
+Q ++ H+L LH+ G Q +I + K+G ++QD+S+ V +++
Sbjct: 195 LQDEGYDVEKDHDLPYCLHI--------GGQPIIHSRSFKDGFVSIQDKSSMFVAHIMNV 246
Query: 334 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILN-ETAKLHQVNSVIRTI 392
++D C+APGGK ++A L +G V A DI+ ++ ++N KL N I+
Sbjct: 247 DRHDHVLDACSAPGGKACHIAEVLMPEGQVDASDIHDHKIDLINFNIKKLRLTN--IKAF 304
Query: 393 HADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAAS 452
D D + DK+L+DAPCSGLGV+ + ++++ + + +E L LQ E+L+
Sbjct: 305 QHDATKPYDKT---YDKILVDAPCSGLGVMRHKPEIKYTQSKQHIESLVDLQLEILENVK 361
Query: 453 LLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADG-----------LVPSDFV 501
VK GG +VYSTC+I+ ENE + FL + F +P ++P DF
Sbjct: 362 NNVKIGGEIVYSTCTIEQLENENVIYTFLKNNKNFEFEPFQHPITGELVKTLQIMPQDF- 420
Query: 502 TKHGFFFS 509
GFF +
Sbjct: 421 NSDGFFIT 428
>gi|417937843|ref|ZP_12581143.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
infantis SK970]
gi|343392107|gb|EGV04680.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
infantis SK970]
Length = 438
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 127/385 (32%), Positives = 201/385 (52%), Gaps = 29/385 (7%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L D LVT++V GT+ + L+ + D S L +L + Y++ LD
Sbjct: 39 LSTADKGLVTELVYGTVARKLTLEWYLSHFIEDRDKLDSW---LYVLLLMSVYQLQYLDK 95
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P +AVV+E V +AK+ + G+ LVN +LR++ L++ LP ++ R R +
Sbjct: 96 LPDHAVVNEAVEIAKLR-KKGSEKLVNAVLRRI--LREG----LPDIDSIKRKNKRD-SI 147
Query: 226 IYSHPVWMVRRWTKYLGQE--EAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKL 283
YS PVW++ + + G+E +AI + + S + SRK + L +LL
Sbjct: 148 AYSLPVWLISKLKEEYGEERAQAIFESLLQRNKASIRVTDLSRKEEIKTLLGASDSLLS- 206
Query: 284 QVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCC 343
P L F L EGL +QDES+ LV +D Q + I+D C
Sbjct: 207 --PAGLVKEQGHFA----------SHDLFSEGLITIQDESSQLVAPTLDLQGPEQILDAC 254
Query: 344 AAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN- 402
AAPGGKT +MAS L+ G V A+D+ +L ++ E A+ V ++T D R +
Sbjct: 255 AAPGGKTAHMASYLT-TGQVTALDLYDHKLTLIQENAERLGVADRVKTQKLDARKVHEFF 313
Query: 403 STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLV 462
+ DK+L+DAPCSG+G+L ++ D+++N+ D L+ +Q E+L + ++ GG++
Sbjct: 314 GKDQFDKILVDAPCSGIGLLRRKPDIKYNKDTTDFVSLQEIQLEILGSVCQTLRKGGIIT 373
Query: 463 YSTCSIDPEENEERVEAFLLRHPEF 487
YSTC+I EEN + V+AFL HPEF
Sbjct: 374 YSTCTIVSEENFQVVQAFLESHPEF 398
>gi|15675503|ref|NP_269677.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus pyogenes SF370]
gi|13622700|gb|AAK34398.1| putative RNA-binding Sun protein [Streptococcus pyogenes M1 GAS]
Length = 440
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 131/432 (30%), Positives = 217/432 (50%), Gaps = 41/432 (9%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
K L +D L+T+IV GT+ + L+ L H K ++ + +L + Y++ L
Sbjct: 38 KALSAKDRALLTEIVYGTVSRKISLE---WYLAHYVKDRDKLDKWVYYLLMLSLYQLTYL 94
Query: 165 D-MPPYAVVDENVRLAKV-ALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARA 222
D +P +A+V++ V +AK + GA VN ILR+ S PLP +E R + +
Sbjct: 95 DKLPAHAIVNDAVGIAKNRGNKKGAEKFVNAILRQFT------SHPLPDMETIKR-RNKY 147
Query: 223 LATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLK 282
+ YS PVW+V++ G + ++ +M S +R+ + VT + LK
Sbjct: 148 YSVKYSLPVWLVKKLEDQFGSDRSVAIM------ESLFVRSKASIRVT--------DPLK 193
Query: 283 LQVPHELSLHLDEFIRVKTGLQ----NVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQS 338
L+ E +L + + TGL + + G +QDES+ LV ++
Sbjct: 194 LEEVAE-ALDAERSLLSATGLTKASGHFAASDYFTNGDITIQDESSQLVAPTLNIDGDDI 252
Query: 339 IVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT 398
I+D C+APGGKT ++AS L G V A+D+ +L ++ E A V I T D R
Sbjct: 253 ILDACSAPGGKTSHIASYLK-TGKVIALDLYDHKLELVKENANRLGVADNIETRKLDARE 311
Query: 399 ----FADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLL 454
F +S DK+L+DAPCSG+G++ ++ D+++N+ + L+ +Q E+L +
Sbjct: 312 VHRHFEKDS---FDKILVDAPCSGIGLIRRKPDIKYNKESQGFNALQAIQLEILSSVCQT 368
Query: 455 VKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKH 514
++ GG++ YSTC+I EEN + +EAFL HP F + +D V K G+ P ++
Sbjct: 369 LRKGGIITYSTCTIFDEENRQVIEAFLQSHPNFEQVKLNH-TQADIV-KDGYLIITPEQY 426
Query: 515 SLDGAFAARLVR 526
DG F ++ R
Sbjct: 427 QTDGFFIGQVRR 438
>gi|386017393|ref|YP_005935691.1| ribosomal RNA small subunit methyltransferase B RsmB [Pantoea
ananatis AJ13355]
gi|327395473|dbj|BAK12895.1| ribosomal RNA small subunit methyltransferase B RsmB [Pantoea
ananatis AJ13355]
Length = 433
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 128/430 (29%), Positives = 215/430 (50%), Gaps = 52/430 (12%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
K L D+D LV +I G +R L+ LI L E+ + + L ++ +G Y+++
Sbjct: 34 KKLSDKDAALVQEICFGVLRTLPQLEALIGKLM--ERPLTGKQRTLHFLIMVGLYQLLYT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P +A + E V A+V R L+NG+LR+ R Q LA
Sbjct: 92 RVPAHAALAETVAGAEVLKRANLKGLINGVLRQF-----------------QRQQEALLA 134
Query: 225 TI------YSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQL 278
+I + HP W++ R + E+ +++ NN P LR N R+ +R + +L
Sbjct: 135 SIQDGPQRHLHPGWLLNR-LQQAWPEQWQQIVEANNQRPPMWLRVN-RQHHSRDSWLARL 192
Query: 279 NLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQS 338
+ + ++ + E +R+ + G ++G VQD SA +++P+ G+
Sbjct: 193 --IAEEKSAAVAQDVPEALRLTAPAPVTLLPGF-EQGWFTVQDLSAQRCALLLEPKNGEQ 249
Query: 339 IVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNE-------TAKLHQVNSVIRT 391
I+D CAAPGGKT ++ ++ + V A+D++ RL+ +NE TA++ Q +
Sbjct: 250 ILDLCAAPGGKTTHILE-IAPEAQVLAVDVDAQRLKRVNENLTRLGMTAEVKQGDGRTPQ 308
Query: 392 IHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAA 451
D R F D++LLDAPCS GV+ + D++W RR D+ EL LQ E+LDA
Sbjct: 309 QWCDQRQF--------DRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAALQREILDAT 360
Query: 452 SLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPE-----FSIDPADGL-VPSDFVTKHG 505
L+KPGG ++Y+TCS+ P+EN+ ++ F+ RH + S P +G V + G
Sbjct: 361 WPLLKPGGTMIYATCSVLPDENQRQISEFIERHADAEAVSLSGAPLNGWQVFPEAEGGDG 420
Query: 506 FFFSDPIKHS 515
FF++ +K +
Sbjct: 421 FFYAKLVKRT 430
>gi|417891867|ref|ZP_12535924.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21200]
gi|341851153|gb|EGS92082.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21200]
Length = 435
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 130/428 (30%), Positives = 214/428 (50%), Gaps = 58/428 (13%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTF--SSMEPLLLQILRIGFYEIVK 163
+L+ D L T+IV GT++ + LD + K F + ++P + Q+L + Y+ V
Sbjct: 35 ELNAMDKALFTEIVYGTVKRKYTLDFYL-------KPFVKTKIKPWVRQLLWMSIYQYVY 87
Query: 164 LD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVL--LKDNNSLPLPKLEGNDRAQA 220
LD +P +A+++E V +AK GN+VNGILR ++ L D N + PK
Sbjct: 88 LDKVPNHAIINEAVEIAKERGGYHNGNVVNGILRTMMRSDLPDFNKIADPK--------- 138
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADL-----V 275
+ +A YS P W++ W + G E ++ S ++RAN +TRA L
Sbjct: 139 KRMAIEYSMPKWIIDHWATHYGLEGTETILQSFLETTSTTVRAN----LTRASLDDIIEK 194
Query: 276 MQLNLLKLQVPHEL--SLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDP 333
+Q ++ H+L LH+ G Q +I + K+G ++QD+S+ V +++
Sbjct: 195 LQDEGYDVEKDHDLPYCLHI--------GGQPIIHSRSFKDGFVSIQDKSSMFVAHIMNV 246
Query: 334 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILN-ETAKLHQVNSVIRTI 392
++D C+APGGK ++A L +G V A DI+ ++ ++N KL N I+
Sbjct: 247 DRHDHVLDACSAPGGKACHIAEVLMPEGQVDASDIHDHKIDLINFNIKKLRLTN--IKAF 304
Query: 393 HADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAAS 452
D D + DK+L+DAPCSGLGV+ + ++++ + + +E L LQ E+L+
Sbjct: 305 QHDATKPYDKT---YDKILVDAPCSGLGVMRHKPEIKYTQSKQHIESLVDLQLEILENVK 361
Query: 453 LLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADG-----------LVPSDFV 501
VK GG +VYSTC+I+ ENE + FL + F +P ++P DF
Sbjct: 362 NNVKIGGEIVYSTCTIEQLENENVIYTFLKNNKNFEFEPFQHPITGELVKTLQIMPQDF- 420
Query: 502 TKHGFFFS 509
GFF +
Sbjct: 421 NSDGFFIT 428
>gi|255282547|ref|ZP_05347102.1| ribosomal RNA small subunit methyltransferase B [Bryantella
formatexigens DSM 14469]
gi|255266840|gb|EET60045.1| ribosomal RNA small subunit methyltransferase B [Marvinbryantia
formatexigens DSM 14469]
Length = 453
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 131/434 (30%), Positives = 208/434 (47%), Gaps = 37/434 (8%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSS-----MEPLLLQILRIGFYEI 161
L+ RD ++ V GT+ +D+++ + FS+ M+P + ILR+ Y++
Sbjct: 41 LEKRDRAFISRTVEGTMENMIQIDYIL-------EQFSTVKVQNMKPAIRNILRMSIYQM 93
Query: 162 VKLDMPPYA-VVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
+D P+A VV+E V+L + VNG+LR + + +R
Sbjct: 94 QYMDGVPHAAVVNEAVKLTQKKGFYTLKGFVNGVLRAA-----ERGIGEVRFPDAERTPR 148
Query: 221 RALATIYSHPVWMVRRWTKYL--GQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQL 278
+ L+ YS P W++++W E I +W S + T + + +
Sbjct: 149 KYLSVRYSMPEWILQKWLAQFDFATVEKICRGLWQESRTCIRCNLSRAPKETIIEKLREQ 208
Query: 279 NLLKLQVPH-ELSLHLDEFIRVKTGLQNVIQA-GLLKEGLCAVQDESAGLVVAVVDPQPG 336
N+ +VP+ +L + ++ N +QA KEGL VQD S+ LV V P+ G
Sbjct: 209 NITVKEVPYLPYALEISDY--------NYLQAINAFKEGLFQVQDVSSMLVAEVAAPKWG 260
Query: 337 QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNET-AKLHQVNSVIRTIHAD 395
+D CAAPGGK+L+++ L+G G V A D+ ++ ++ E + ++N + I D
Sbjct: 261 DYCIDVCAAPGGKSLHLSDKLNGSGYVEARDLTDYKVSLMQENLERTGRIN--MTAIRQD 318
Query: 396 LRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLV 455
F S K D +L D PCSGLGV+ ++ D+++ +EL LQ ++LD V
Sbjct: 319 ATVFDGASVEKADILLADLPCSGLGVIGRKPDIKYKMTEAKQQELVKLQRKILDTVWSYV 378
Query: 456 KPGGVLVYSTCSIDPEENEERVEAFLLRHPEF---SIDPADGLVPSDFVTKHGFFFSDPI 512
K GG L+YSTC+I +EN+ V+ FL +P F SIDP TK G+ P
Sbjct: 379 KVGGTLIYSTCTIGADENQYNVKWFLENYP-FRLESIDPYLCDALKSRTTKAGYLQLLPG 437
Query: 513 KHSLDGAFAARLVR 526
H DG F AR R
Sbjct: 438 VHGTDGFFIARFKR 451
>gi|258511305|ref|YP_003184739.1| sun protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius
DSM 446]
gi|257478031|gb|ACV58350.1| sun protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius
DSM 446]
Length = 451
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 146/432 (33%), Positives = 220/432 (50%), Gaps = 29/432 (6%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+D+RD L T+I GT+R + LD L+ L + S ++P + ILR+G Y++ L+
Sbjct: 36 VDERDRALATEIAYGTLRRQITLDRLLSPLVR--RPMSKLDPEVRVILRMGAYQMTWLNR 93
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P YA ++ V LAK RP A LVN +LR+ + L K + R +
Sbjct: 94 VPAYAAANDAVELAK-RHRPQAAALVNAVLRRYAERAQDWEDLLNKAVAGAKDVER-WSV 151
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLL-KLQ 284
+YS P W+V R G + + + N SLRAN +G +R + + +L +
Sbjct: 152 MYSVPAWIVERLVADHGADRVLAALASMNEPAPMSLRANRLRG-SREEAIARLGAEGAVA 210
Query: 285 VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 344
P L+ ++ +RV+ G +V + ++G +QDE A LV ++ P+PG +VD CA
Sbjct: 211 RPAALA---EDGLRVQ-GQVDVTRLQAYRDGYVTIQDEGAMLVAPLLRPEPGMRVVDLCA 266
Query: 345 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNST 404
APGGKT ++A + +G + A D+ ++R + + A+ + SV H L D
Sbjct: 267 APGGKTTHLAELMGDRGEIDAYDVTVAKVRAIRQQAERLGLQSV----HPRL---GDGRQ 319
Query: 405 VK----CDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGV 460
V D L+DAPC+GLGV+ +R DLR+ RR ED+ +L LQ LL A +V+ GG
Sbjct: 320 VTPEGLYDAALVDAPCTGLGVMRRRPDLRYRRRPEDVAQLAQLQRALLRRACAIVRSGGC 379
Query: 461 LVYSTCSIDPEENEERVE------AFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKH 514
+VYSTC++ EENE V + +R + D A L S GF P H
Sbjct: 380 VVYSTCTLLKEENESVVRDVASDPSVGVRIEDIGGDLAPTLAVSVGERSPGFLLW-PDWH 438
Query: 515 SLDGAFAARLVR 526
DG F ARL R
Sbjct: 439 ETDGFFMARLRR 450
>gi|313890028|ref|ZP_07823664.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
pseudoporcinus SPIN 20026]
gi|416852116|ref|ZP_11909261.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
pseudoporcinus LQ 940-04]
gi|313121619|gb|EFR44722.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
pseudoporcinus SPIN 20026]
gi|356739605|gb|EHI64837.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
pseudoporcinus LQ 940-04]
Length = 440
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 125/428 (29%), Positives = 222/428 (51%), Gaps = 37/428 (8%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+ D+D L+T+IV GTI + L+ + D + ++ + +L + Y+++ L+
Sbjct: 40 VQDKDKGLITEIVYGTIAKKITLEWYLSHYVEDRE---KLDKWVYYLLMLSLYQMLYLEK 96
Query: 166 MPPYAVVDENVRLAKV-ALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P +A+V++ V +AK + GA +N ILR++ + LP L+ R R +
Sbjct: 97 IPSHAIVNDAVDIAKNRGYKRGAEKYINAILRQVSVGN------LPSLDSIKRKNKR-YS 149
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLM--VWNNSDPSFSLRANSRKGVTRADLVMQLNLLK 282
YS P+W+V++ + G + AI +M + +S S + + R R L Q + L
Sbjct: 150 IAYSVPIWLVKKLCEQFGDDRAIAIMESLSFHSKASIRVTNSQRFDEVRDYLEAQTSAL- 208
Query: 283 LQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 342
P L+ F +EGL +QDE++ LV + + ++++D
Sbjct: 209 --APTALTKTTGHFA----------SHAYFQEGLITIQDETSQLVAPTLAIKGDENVLDA 256
Query: 343 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR----T 398
C+APGGKT ++AS L+ G + A+DI++ +L ++ + A+ V I T D R
Sbjct: 257 CSAPGGKTCHLASYLT-TGKITALDIHEHKLTLVRQNAERLGVLDKIETRALDARKVHEV 315
Query: 399 FADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPG 458
FA++S DK+L+DAPCSG+G++ ++ D+++N+ +D+ L+ LQ E+L + ++ G
Sbjct: 316 FANDS---FDKILVDAPCSGIGLIRRKPDIKYNKDGQDLTALQNLQLEILSSVCQTIRKG 372
Query: 459 GVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDG 518
G++ YSTC+I EEN + +E FL H F +D V K G P ++ DG
Sbjct: 373 GIITYSTCTIFDEENFQVIEKFLESHSNFE-QVKLKHTQADIV-KDGCILVTPEQYQTDG 430
Query: 519 AFAARLVR 526
F +++ R
Sbjct: 431 FFISQVRR 438
>gi|419783366|ref|ZP_14309154.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
oralis SK610]
gi|383182250|gb|EIC74808.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
oralis SK610]
Length = 437
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 124/382 (32%), Positives = 200/382 (52%), Gaps = 31/382 (8%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPY 169
D LVT+IV GT+ + L+ + D ++ L +L + Y++ LD +P +
Sbjct: 42 DKGLVTEIVYGTVARKLTLEWYLSHFIQDR---DKLDNWLYILLLLSAYQLRYLDKIPNH 98
Query: 170 AVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSH 229
AVV+E V LAK A + G+ LVN +LR++ L++ P ++ R R + YS
Sbjct: 99 AVVNEAVELAK-ARKKGSEKLVNAVLRRI--LREG----WPDIDSIKRKNKRD-SIAYSL 150
Query: 230 PVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHEL 289
PVW+V + + G+E A + SL ++ + ADL + + + +
Sbjct: 151 PVWLVSKLKEEYGEERAQAIFK--------SLLVRNKASIRVADLSRKEEIKAVLEATDS 202
Query: 290 SLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGK 349
L ++ + L EG +QDES+ LV +D Q + ++D CAAPGGK
Sbjct: 203 PLAATGLVKEQGHFAG---HDLFAEGAITIQDESSQLVAPTLDLQGDEQVLDACAAPGGK 259
Query: 350 TLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT----FADNSTV 405
T +MAS L+ G V A+D+ +L ++ E A+ V ++T D R F +S
Sbjct: 260 TAHMASYLTS-GKVTALDLYDHKLDLIQENAERLGVADQVQTQKLDARKVHEFFGRDS-- 316
Query: 406 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465
DK+L+DAPCSG+G+L ++ D+++N+ D L+ +Q E+L + ++ GG++ YST
Sbjct: 317 -FDKILVDAPCSGIGLLRRKPDIKYNKETADFTSLQEIQLEILGSVCQTLRKGGIITYST 375
Query: 466 CSIDPEENEERVEAFLLRHPEF 487
C+I EEN + VEAFL HPEF
Sbjct: 376 CTIVSEENFQVVEAFLESHPEF 397
>gi|149910330|ref|ZP_01898973.1| Putative Sun protein [Moritella sp. PE36]
gi|149806578|gb|EDM66546.1| Putative Sun protein [Moritella sp. PE36]
Length = 431
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 134/424 (31%), Positives = 204/424 (48%), Gaps = 30/424 (7%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDM 166
L +D L+ +I G +RW L+ + L + P+ IL +G Y++ + +
Sbjct: 32 LPAKDRALLQEICYGVLRWLPRLEFMSRQLM-SKPLIGKQRPVHFLIL-VGLYQLKYMRI 89
Query: 167 PPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKL-EGNDRAQARALAT 225
P +A V E V KV P LVN ILR +D+ L L +GND A
Sbjct: 90 PAHAAVAETVNAIKVLKSPKLSGLVNAILRNYQRQQDD----LETLADGND-------AC 138
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
+ HP W+++R ++ LM NN P +R N + +AD Q L ++
Sbjct: 139 KFGHPGWLIKRIKAAYPKQWQDVLMA-NNERPPMWIRVNQQHH-NQAD--YQALLAADEI 194
Query: 286 PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAA 345
E+ D +R+ +V + EG +VQD +A +D QPG+ ++D CAA
Sbjct: 195 VAEIVDSADSALRLAKPT-DVYKLAGFAEGHSSVQDGAAQFAAQFLDAQPGELVLDACAA 253
Query: 346 PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-ST 404
PGGKT ++ + A+D + RL + E Q+++ + IH D D
Sbjct: 254 PGGKTAHILERQPALKHLVAVDFDATRLSRVQENLTRMQLDAEL--IHGDASKPEDWWQG 311
Query: 405 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464
K D++LLDAPCS GV+ + D++W RR D+ L LQ E+LDA L +KPGG L+Y+
Sbjct: 312 DKFDRILLDAPCSATGVIRRHPDIKWLRRDSDIAPLVQLQAEILDAMWLQLKPGGTLLYA 371
Query: 465 TCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSD--PIKHSLDGAFAA 522
TCSI P EN E++ +F+ R P+ LVP + + F P +DG F A
Sbjct: 372 TCSILPAENSEQISSFVARTPDAV------LVPLNADSNDQAFSWQILPNTQGMDGFFYA 425
Query: 523 RLVR 526
+L +
Sbjct: 426 KLQK 429
>gi|242373505|ref|ZP_04819079.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus epidermidis
M23864:W1]
gi|242348868|gb|EES40470.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus epidermidis
M23864:W1]
Length = 435
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 124/417 (29%), Positives = 215/417 (51%), Gaps = 46/417 (11%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTF--SSMEPLLLQILRIGFYEIVKLD-MP 167
D L T++V GTI+ + LD+++ K F + ++ + Q+L + Y+ V LD +P
Sbjct: 40 DRNLYTELVYGTIKRKYTLDYIL-------KPFVKTKIKGWMRQLLWMSIYQYVYLDKVP 92
Query: 168 PYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIY 227
+A+++E V +AK GN+VNGILR ++ + LP+ + + R +A Y
Sbjct: 93 DHAIINEAVDIAKHRGGYHNGNVVNGILRSIMRSE------LPQFDEIKDDKKR-IAIKY 145
Query: 228 SHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPH 287
S P W+V W + G E + ++R N +G + +V +L +V
Sbjct: 146 SIPKWIVDHWVTHHGIETTEAIAQSFLEPVKTTVRVNISRGSVDS-IVAELEKEGFKVEK 204
Query: 288 E----LSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCC 343
+ LH+ TG Q +I + K+G +VQD+S+ +V +++ ++D C
Sbjct: 205 DEILPFCLHI-------TG-QPIINSRAFKDGYVSVQDKSSMMVAHIMNLGRNDVVLDAC 256
Query: 344 AAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS 403
+APGGK +MA LS +G V A DI+ ++ ++N K +++++ H +
Sbjct: 257 SAPGGKACHMAEILSPEGHVDATDIHTHKIDLINFNIKKLKLDNISAFQHDATEPY---- 312
Query: 404 TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463
T DK+L+DAPCSGLGVL + ++++ + E ++ L LQ ++L+ +KPGG +VY
Sbjct: 313 TRTYDKILVDAPCSGLGVLRHKPEIKYTQSKESIQSLVELQLQILENIKRNIKPGGTIVY 372
Query: 464 STCSIDPEENEERVEAFLLRHPEFSIDPADG-----------LVPSDFVTKHGFFFS 509
STC+I+ ENE + FL ++ EF +P ++P DF + GFF +
Sbjct: 373 STCTIEQMENENVIYTFLKQNEEFEFEPFQHPVTGKEVNTLQILPQDFDSD-GFFIT 428
>gi|417922932|ref|ZP_12566415.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
mitis SK569]
gi|342837462|gb|EGU71647.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
mitis SK569]
Length = 437
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 125/382 (32%), Positives = 197/382 (51%), Gaps = 31/382 (8%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPY 169
D LVT+IV GT+ + L+ + D S L +L + Y++ LD +P +
Sbjct: 42 DKGLVTEIVYGTVARKLTLEWYLSHFIEDRDQLDSW---LYVLLLMSAYQLRYLDKIPDH 98
Query: 170 AVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSH 229
AVV+E V LAKV + G+ LVN +LR++ L++ P + R R + YS
Sbjct: 99 AVVNEAVELAKVR-KKGSEKLVNAVLRRI--LREG----WPDITSIKRKNKRD-SIAYSL 150
Query: 230 PVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHEL 289
PVW+V + + G+E A + SL ++ + DL + + L +
Sbjct: 151 PVWLVAKLKEEYGEERAQAIFE--------SLLVRNKASIRVTDLSRKEEIQALLEASDS 202
Query: 290 SLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGK 349
SL ++ + L +G +QDES+ LV +D Q + ++D CAAPGGK
Sbjct: 203 SLSPSGLVKEQGHFAG---HDLFADGAITIQDESSQLVAPTLDLQGNEKVLDACAAPGGK 259
Query: 350 TLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT----FADNSTV 405
T ++AS L+ G V A+D+ +L ++ E A+ V ++T D R F NS
Sbjct: 260 TAHIASYLT-TGQVTALDLYDHKLDLIQENAQRLGVADRVQTQKLDARKVHEFFGQNS-- 316
Query: 406 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465
DK+L+DAPCSG+G+L ++ D+++N+ D L+ +Q E+L + + GG++ YST
Sbjct: 317 -FDKILVDAPCSGIGLLRRKPDIKYNKETADFASLQEIQLEILGSVCQTLGKGGIITYST 375
Query: 466 CSIDPEENEERVEAFLLRHPEF 487
C+I EEN + VEAFL HPEF
Sbjct: 376 CTIVSEENFQVVEAFLESHPEF 397
>gi|148240114|ref|YP_001225501.1| ribosomal RNA small subunit methyltransferase B [Synechococcus sp.
WH 7803]
gi|147848653|emb|CAK24204.1| Ribosomal RNA small subunit methyltransferase B [Synechococcus sp.
WH 7803]
Length = 447
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 131/422 (31%), Positives = 203/422 (48%), Gaps = 30/422 (7%)
Query: 96 VERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILR 155
+ER L R L D L T++ G IRWR++LD + L + P L +L
Sbjct: 36 LERAL--RQHPLQAADRGLATELAYGAIRWRQWLDAWLDKL--GKVPARKQPPRLRWLLH 91
Query: 156 IGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKD-NNSLPLPKLE 213
+G Y++++++ +P A V+ V LAK +VNG+LR + ++ + L P
Sbjct: 92 LGLYQVLRMERIPAAAAVNTTVELAKRGKLARLAPVVNGLLRAALRAREAGDGLVQPT-- 149
Query: 214 GNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRAD 273
A ALA S P+W + ++ G +A ++ N P LR N R + A+
Sbjct: 150 ----DPALALAQNQSLPLWFTQDLLRWCGPAQAAQVAQACNQVPPLDLRIN-RLRSSPAE 204
Query: 274 LVMQLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLK------EGLCAVQDESAGLV 327
+ +L E S+ GLQ + AG L+ EG VQD +A V
Sbjct: 205 MAARLA--------ECSMPTAAIPGCPDGLQVLHSAGDLRQWPGYEEGHWCVQDRAAQWV 256
Query: 328 VAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNS 387
++ +PGQ ++D CAAPGGK ++A + QG V+A+D + GRL+ + A
Sbjct: 257 APLLAVEPGQRVLDACAAPGGKATHLAELMGDQGEVWAVDRSGGRLQRVAANAARLGCGC 316
Query: 388 VIRTIHADLRTFADNSTVKC--DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQD 445
+ + + + D++LLDAPCSGLG L++ D RW + +L LQ
Sbjct: 317 INALAADAAQLLEERPQWRASFDRILLDAPCSGLGTLARHPDARWRISEASIADLVKLQA 376
Query: 446 ELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHG 505
LLDA L+KPGG +VY+TC++ P EN E++ +L RHP+ + P D G
Sbjct: 377 GLLDALVPLLKPGGRIVYATCTVHPAENTEQIHGWLQRHPQLVLASEQQRWP-DPQGGDG 435
Query: 506 FF 507
F+
Sbjct: 436 FY 437
>gi|194476557|ref|YP_002048736.1| Sun protein (Fmu protein) [Paulinella chromatophora]
gi|171191564|gb|ACB42526.1| Sun protein (Fmu protein) [Paulinella chromatophora]
Length = 451
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 126/402 (31%), Positives = 203/402 (50%), Gaps = 18/402 (4%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQ-ILRIGFYEIVKLD-MPP 168
D L T+I G+IR R LD L H K ++ +P LL+ +L +G Y+++ ++ +P
Sbjct: 57 DRGLATEIAYGSIRRRLTLD---TYLSHLGKVLANKQPPLLRWLLHVGLYQLLFVERVPS 113
Query: 169 YAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYS 228
A ++ V LAK + +VNGILR + + + ++ +A I+S
Sbjct: 114 AAAINTTVELAKKSSLATLAPVVNGILRTAHRFQQSGKAFVTLSNSSNNLEA-----IHS 168
Query: 229 HPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHE 288
P W+ + GQ V +N P LR N +RA ++ L +KL + +
Sbjct: 169 LPNWLTNNLLSWRGQMGLEAFAVTSNDSPPIDLRINPLN-TSRAQVLHAL--IKLGIKAQ 225
Query: 289 LSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGG 348
L + I + L N+ K G +QD +A + ++DP PG ++D C+APGG
Sbjct: 226 PLPGLSQGIAILGRLGNLQILPGFKLGHWCIQDRAAQWISPLLDPHPGHRVLDVCSAPGG 285
Query: 349 KTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD---NSTV 405
K+ ++A + G ++A+D +K RL+ + AK + + I T+ AD T +D
Sbjct: 286 KSTHIAELMGDVGEIWALDSSKVRLQKVVLNAKRLGLQT-IHTLVADGITISDLKPEWKG 344
Query: 406 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465
D++L+DAPCSGLG L + +D RW D++EL+ +Q+ LL L+KPGG LVY+T
Sbjct: 345 TFDRILIDAPCSGLGTLVRHSDARWRITFNDIKELERIQERLLKGIIPLLKPGGKLVYAT 404
Query: 466 CSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFF 507
C+I+P ENE ++ L +S PS +GFF
Sbjct: 405 CTINPNENETQITKLLNSSSNYSCIFQQTRWPSS-AYGNGFF 445
>gi|317059336|ref|ZP_07923821.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium sp. 3_1_5R]
gi|313685012|gb|EFS21847.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium sp. 3_1_5R]
Length = 440
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 114/387 (29%), Positives = 198/387 (51%), Gaps = 23/387 (5%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
F K + +T++ G IR + YLD++I +K + L Q+ R+ FY+I
Sbjct: 28 FHRKVFKKGEKNFITEVFYGVIRNKIYLDYMI-----SQKVKEVKKDWLQQLFRLSFYQI 82
Query: 162 VKLDMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQAR 221
+ V+ E V LAK VNG+LR N + E N + + R
Sbjct: 83 RFMKSDDKGVIWEGVELAKKKYGVSVSRFVNGVLR-------NFQRSFIEEEENLKREGR 135
Query: 222 ALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLL 281
++S+P W + K E I+++ P S+R N K + L
Sbjct: 136 E-EVLFSYPKWFFEQ-IKKESPERYIEILKSLKRTPLLSVRVNLLKYSCEE---FEEYLR 190
Query: 282 KLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVD 341
K ++ E+ ++ +K G N++ + +EG VQD ++ L + +PG+ ++D
Sbjct: 191 KEEI--EIIKKVETVYYMKAG--NLLNSSEFQEGKIIVQDAASYLAAKNLGAKPGEIVLD 246
Query: 342 CCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD 401
C+APGGKT +A + +G + ++DI+ +++++ E K + ++++ + D R +
Sbjct: 247 TCSAPGGKTSVLAEAMKNEGQILSLDIHTHKIKLIQENCKKLGI-TIVQAVKLDARHLSL 305
Query: 402 NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVL 461
K D++L+DAPCSG GVL+K+ + +N++ E+++EL LQ E+L AA+ ++K GG +
Sbjct: 306 QGK-KFDRILVDAPCSGYGVLAKKPEGLYNKKEENIKELVTLQREILMAAAEVLKVGGEM 364
Query: 462 VYSTCSIDPEENEERVEAFLLRHPEFS 488
VYSTC+I P EN+E + FL HP F
Sbjct: 365 VYSTCTILPAENQENAKWFLETHPNFE 391
>gi|315658498|ref|ZP_07911370.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
lugdunensis M23590]
gi|315496827|gb|EFU85150.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
lugdunensis M23590]
Length = 435
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 124/418 (29%), Positives = 211/418 (50%), Gaps = 34/418 (8%)
Query: 104 TKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVK 163
++DL D L T++V GTI+ + LD+ + + ++ + Q+L + Y+ V
Sbjct: 33 SQDLSAVDKGLYTELVYGTIKRKFTLDYYLRPFVQ-----TKIKGWVRQLLWMSIYQYVY 87
Query: 164 LD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARA 222
LD +P +A+++E V +AK P GN+VN ILR+++ LP ++ + R
Sbjct: 88 LDKVPNHAIINEAVEIAKHRGGPHNGNIVNAILRQIM------RSDLPNVDDITDEKKR- 140
Query: 223 LATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLK 282
++ YS P W+V W + G + ++ + ++RAN K D++ L
Sbjct: 141 MSIAYSLPKWIVDHWVTHYGLAQTHRIGQALLTPTETTVRANIVKASIN-DIIYALE--- 196
Query: 283 LQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 342
Q + ++ D + + VI+A KEGL ++QD+S+ V + + Q ++D
Sbjct: 197 -QDGYTVTKDSDILSCLHIQGRPVIEARAFKEGLISIQDKSSMFVAQLANLQAHDKVLDA 255
Query: 343 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN 402
C+APGGK +MA L+ G V A DI+ ++ ++ K +N+V HA
Sbjct: 256 CSAPGGKACHMAEILAPTGSVDATDIHAHKINLIKYNIKKLGLNNV----HAFQHDATQP 311
Query: 403 STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLV 462
T DK+L+DAPCSGLGVL + ++++ + E + L LQ +L+ +KPGG ++
Sbjct: 312 YTEMYDKILVDAPCSGLGVLRHKPEIKYTQSKEGTQALVDLQLNILNNVKHHLKPGGTII 371
Query: 463 YSTCSIDPEENEERVEAFLLRHPEFS----IDPADG-------LVPSDFVTKHGFFFS 509
YSTC+I+ ENE + +FL + +F I P G ++P DF GFF +
Sbjct: 372 YSTCTIEQLENENVIYSFLKENKDFEFETMIHPQTGEQIKTLQILPQDF-NSDGFFIT 428
>gi|366085800|ref|ZP_09452285.1| 16S rRNA methyltransferase B [Lactobacillus zeae KCTC 3804]
Length = 446
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 136/438 (31%), Positives = 217/438 (49%), Gaps = 48/438 (10%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
LD RD L+T+IV G I+ + LD+L+ + + ++P + +L+ Y++ LD
Sbjct: 37 LDSRDAGLLTNIVYGVIQHQLTLDYLLKPFVKNRQ----LDPWVRCLLQTAVYQLQYLDK 92
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKL--VLLKDNNSLPLPKLEGNDRAQARAL 223
+P AV ++ +AK G V G+LR+ D ++P P LE L
Sbjct: 93 VPARAVFFDSTEIAKQLGHQGIAKFVTGVLRQAQRTGFPDPATIPDP-LE--------RL 143
Query: 224 ATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKL 283
A S P+W+V++ + LG + ++ N S+R N+ K A LLK+
Sbjct: 144 AVTSSTPLWLVKKLQEQLGATKTASILAAINQPAHASIRVNTTKTTPDA-------LLKI 196
Query: 284 QVPHELSLHLDEFIRVKTGLQNVIQAGL--LKEGLCAVQDESAGLVVAVVDPQPGQSIVD 341
P L + AG G +QDES+ LV +D QPG +++D
Sbjct: 197 LQPSFPELRESPLTPIGLIAPGGHLAGTPEFAAGDYTMQDESSMLVAPSLDIQPGDAVLD 256
Query: 342 CCAAPGGKTLYMASCLSGQ--GLVYAIDINKGRLRILNETA-KLHQVNSV------IRTI 392
CAAPGGKT ++A L G V A+D++ ++R++ + A +L V+ V R +
Sbjct: 257 ACAAPGGKTTHIAQYLDPDQGGHVTALDLHANKIRLIQQNANRLGLVDRVSARMLDARQV 316
Query: 393 HADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAAS 452
A TFA S DK+L+DAPCSGLG++ ++ ++++ ++ +D L+ +Q +L++ +
Sbjct: 317 DA---TFAPES---FDKILVDAPCSGLGLIRRKPEIKYTKQADDPRHLQQIQLAILNSVA 370
Query: 453 LLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGF----FF 508
+K GG L YSTC++ EEN++ V FL HPEF P L P HG F
Sbjct: 371 PTLKIGGRLTYSTCTMVKEENQDVVAQFLADHPEFEQVPVLSLKP--LTKAHGAPALQLF 428
Query: 509 SDPIKHSLDGAFAARLVR 526
D + DG F A ++R
Sbjct: 429 PD--DYDTDGFFIASMIR 444
>gi|323487019|ref|ZP_08092331.1| ribosomal RNA small subunit methyltransferase B [Clostridium
symbiosum WAL-14163]
gi|355630345|ref|ZP_09050804.1| ribosomal RNA small subunit methyltransferase B [Clostridium sp.
7_3_54FAA]
gi|323399667|gb|EGA92053.1| ribosomal RNA small subunit methyltransferase B [Clostridium
symbiosum WAL-14163]
gi|354818693|gb|EHF03160.1| ribosomal RNA small subunit methyltransferase B [Clostridium sp.
7_3_54FAA]
Length = 444
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 125/423 (29%), Positives = 204/423 (48%), Gaps = 31/423 (7%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L+ +D + +V GT+ +R LD++ L + + + M+P++ ILR+ Y+I +D
Sbjct: 40 LEKQDRSFIKRVVDGTVEYRIQLDYI--LNSYSKVKVNKMKPVIRTILRMSAYQICHMDR 97
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A +E V+LA+ G VNG+LR + KDN P +
Sbjct: 98 VPDSAACNEAVKLAEKRGFSGLKGFVNGVLRSISRGKDNLVFPDDSIR------------ 145
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQ- 284
YS P W+ W G+E ++M D +R + RA+ L+ L Q
Sbjct: 146 -YSMPEWLASMWKSTYGEETFRRMMESFLKDRPLM----ARLCLNRAEKQQILDSLGAQG 200
Query: 285 VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 344
V + S + D+ I ++ G+ + +EG +QD S+ L + G ++D C
Sbjct: 201 VTAKDSRYADDVICLE-GVDYLEGLEAFREGWLQIQDLSSSLAGDAAGIKDGDYVIDVCG 259
Query: 345 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNST 404
APGGK L+ A L G G+V DI++ ++ ++ E + + +R D +F +S
Sbjct: 260 APGGKGLHAADILGGTGMVEIRDISEAKVSLIEENIGRSGLTN-LRAAVCDALSFDPDSE 318
Query: 405 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464
D V+ D PCSGLG++ ++ D+++N E + +L LQ E+L VKPGG LVYS
Sbjct: 319 EAADVVIADLPCSGLGIIGRKPDIKYNMTPEKLHDLACLQREILSVVQRYVKPGGTLVYS 378
Query: 465 TCSIDPEENEERVEAFLLRHPEFSIDPAD-----GLVPSDFVTKHGFFFSDPIKHSLDGA 519
TC+++ EENE+ + FL F +P + G S+ + G+ P H DG
Sbjct: 379 TCTVNREENEDNMRWFL---EHFPFEPVNLKGRLGEKLSEPSMESGYIQFLPGIHPCDGF 435
Query: 520 FAA 522
F A
Sbjct: 436 FIA 438
>gi|410727115|ref|ZP_11365338.1| ribosomal RNA small subunit methyltransferase RsmB [Clostridium sp.
Maddingley MBC34-26]
gi|410599450|gb|EKQ54003.1| ribosomal RNA small subunit methyltransferase RsmB [Clostridium sp.
Maddingley MBC34-26]
Length = 438
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 137/425 (32%), Positives = 225/425 (52%), Gaps = 28/425 (6%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD 165
DL+++D L+T+IV G +R ++ LD +I D K M +L ILR+ Y++ LD
Sbjct: 33 DLNEKDKALLTEIVYGVLRRKKTLDIIISNFVKDIKL---MNKDILNILRVAIYQMNFLD 89
Query: 166 -MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P YA +E V AK + LVNGILR D+ + K++ A
Sbjct: 90 KIPSYAACNEAVEEAK-EISEEDSKLVNGILRNFTKNPDDIEVSGNKID--------EYA 140
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQ 284
+S WM+R K G+ + K+M NS P S+R N K D V + L +L+
Sbjct: 141 YKFSFEPWMIRLLIKQYGENLSKKIMSGLNSIPQVSVRVNEIKA--DYDDVFEK-LEELE 197
Query: 285 VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 344
E + E I +K G +++ L KEG VQDESA ++ +++ + G +++D C+
Sbjct: 198 YEVEEGVICPEAICIKGG-KSIENNPLFKEGKITVQDESAMIIAPLLELEEGMTVLDLCS 256
Query: 345 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNST 404
APGGKT ++A L G V A D+++ +L ++ E + + +V + R D
Sbjct: 257 APGGKTTHIAEILQNTGKVLAYDLHESKLGLIKENCERLGITNVEVNTNDATRLNPD-LI 315
Query: 405 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464
D++L+D PCSGLG++ K+ +++WN+ D+ E+ +Q +++++A + +K GV++YS
Sbjct: 316 AASDRILIDVPCSGLGIIRKKPEIKWNKTRNDLREIIKIQRDIMESAWMYLKADGVMIYS 375
Query: 465 TCSIDPEENEERVEAFLLRHPEFS-----IDPADGLVPSDFVTKHGFFFSDPIKHSLDGA 519
TC+++ EENEE +E F+ RH + S I D LV + G P ++DG
Sbjct: 376 TCTLNKEENEENIEWFVNRHKDCSVKKIFIGKQDNLV----YNRDGSLTILP-NENMDGF 430
Query: 520 FAARL 524
F A+L
Sbjct: 431 FVAKL 435
>gi|449996282|ref|ZP_21823448.1| putative RNA-binding Sun protein [Streptococcus mutans A9]
gi|449183319|gb|EMB85304.1| putative RNA-binding Sun protein [Streptococcus mutans A9]
Length = 437
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 125/420 (29%), Positives = 218/420 (51%), Gaps = 44/420 (10%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L D L+T++V GT+ + L+ + D + +E + +L + Y+I+ LD
Sbjct: 39 LSQTDRSLLTELVYGTLTRKITLEWYLAHYIEDR---NKLETWIYYLLMLSLYQILYLDK 95
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P +A+V+E V LAK R GA LVN +LR+ + K P + R R T
Sbjct: 96 IPQHAIVNEAVDLAKSRNR-GAEKLVNAVLRQFLRQKR------PDITVIKRKNKRYSIT 148
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
YS PVW+V++ G++ AI ++ S +R+ + V D Q+ ++
Sbjct: 149 -YSVPVWLVKKMIDQFGEDRAISIL------KSLLVRSKASIRVVNPD---QIEVIAKAT 198
Query: 286 PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAA 345
+ S+ L VK Q + L K+G +QDES+ LV + + ++++D C+A
Sbjct: 199 GAKKSV-LSPCGLVKASGQ-FFDSDLFKQGKITIQDESSQLVAPTLAIKGNETVLDACSA 256
Query: 346 PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT----FAD 401
PGGK +++AS L+ G + A+D+ +L+++ + A + + I+ D R FA
Sbjct: 257 PGGKAVHIASYLTT-GQIIALDLYDHKLKLIKDNADRLKAANYIKPQKLDARKVHKYFAK 315
Query: 402 NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVL 461
++ DK+L+DAPCSG+G++ ++ D+++N+ +D L+ +Q E+LD+ +K GG++
Sbjct: 316 DT---FDKILVDAPCSGIGLIRRKPDIKYNKDSKDFTSLQKIQLEILDSVCQTIKKGGII 372
Query: 462 VYSTCSIDPEENEERVEAFLLRHPEFS------------IDPADGLVPSDFVTKHGFFFS 509
YSTC+I EEN+ ++ FL +HP F +D + P ++T GFF S
Sbjct: 373 TYSTCTIFAEENQMVLKQFLEQHPNFEQVKLNHKKKDIVVDGCLLITPEQYLT-DGFFIS 431
>gi|449865792|ref|ZP_21779185.1| putative RNA-binding Sun protein [Streptococcus mutans U2B]
gi|449264089|gb|EMC61441.1| putative RNA-binding Sun protein [Streptococcus mutans U2B]
Length = 437
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 125/420 (29%), Positives = 218/420 (51%), Gaps = 44/420 (10%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L D L+T++V GT+ + L+ + D + +E + +L + Y+I+ LD
Sbjct: 39 LSQADRSLLTELVYGTLTRKITLEWYLAHYIEDR---NKLETWIYYLLMLSLYQILYLDK 95
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P +A+V+E V LAK R GA LVN +LR+ + K P + R R T
Sbjct: 96 IPQHAIVNEAVDLAKSRNR-GAEKLVNAVLRQFLRQKR------PDITVIKRKNKRYSIT 148
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
YS PVW+V++ G++ AI ++ S +R+ + V D Q+ ++
Sbjct: 149 -YSVPVWLVKKMIDQFGEDRAISIL------KSLLVRSKTSIRVVNPD---QIEVIAKAT 198
Query: 286 PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAA 345
+ S+ L VK Q + L K+G +QDES+ LV + + ++++D C+A
Sbjct: 199 GAKKSV-LSPCGLVKASGQ-FFDSDLFKQGKITIQDESSQLVAPTLAIKGNETVLDACSA 256
Query: 346 PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT----FAD 401
PGGK +++AS L+ G + A+D+ +L+++ + A + + I+ D R FA
Sbjct: 257 PGGKAVHIASYLTT-GQIIALDLYDHKLKLIKDNADRLKAANYIKPQKLDARKVHKYFAK 315
Query: 402 NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVL 461
++ DK+L+DAPCSG+G++ ++ D+++N+ +D L+ +Q E+LD+ +K GG++
Sbjct: 316 DT---FDKILVDAPCSGIGLIRRKPDIKYNKDSKDFTSLQKIQLEILDSVCQTIKKGGII 372
Query: 462 VYSTCSIDPEENEERVEAFLLRHPEFS------------IDPADGLVPSDFVTKHGFFFS 509
YSTC+I EEN+ ++ FL +HP F +D + P ++T GFF S
Sbjct: 373 TYSTCTIFAEENQMVLKQFLEQHPNFEQVKLNHKKKDIVVDGCLLITPEQYLT-DGFFIS 431
>gi|57651786|ref|YP_186092.1| sun protein [Staphylococcus aureus subsp. aureus COL]
gi|148267708|ref|YP_001246651.1| sun protein [Staphylococcus aureus subsp. aureus JH9]
gi|150393766|ref|YP_001316441.1| sun protein [Staphylococcus aureus subsp. aureus JH1]
gi|151221339|ref|YP_001332161.1| hypothetical protein NWMN_1127 [Staphylococcus aureus subsp. aureus
str. Newman]
gi|161509389|ref|YP_001575048.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus aureus subsp.
aureus USA300_TCH1516]
gi|221142007|ref|ZP_03566500.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus aureus subsp.
aureus str. JKD6009]
gi|253315575|ref|ZP_04838788.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus aureus subsp.
aureus str. CF-Marseille]
gi|255006004|ref|ZP_05144605.2| rRNA (cytosine-5-)-methyltransferase [Staphylococcus aureus subsp.
aureus Mu50-omega]
gi|257795727|ref|ZP_05644706.1| ribosomal small subunit methyltransferase B [Staphylococcus aureus
A9781]
gi|258415951|ref|ZP_05682221.1| RNA-binding Sun protein [Staphylococcus aureus A9763]
gi|258419698|ref|ZP_05682665.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus A9719]
gi|258438740|ref|ZP_05689893.1| ribosomal RNA small subunit methyltransferase [Staphylococcus
aureus A9299]
gi|258444554|ref|ZP_05692883.1| ribosomal RNA small subunit methyltransferase [Staphylococcus
aureus A8115]
gi|258447613|ref|ZP_05695757.1| RNA-binding Sun protein [Staphylococcus aureus A6300]
gi|258449455|ref|ZP_05697558.1| RNA-binding Sun protein [Staphylococcus aureus A6224]
gi|258452514|ref|ZP_05700520.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus A5948]
gi|258454834|ref|ZP_05702798.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus A5937]
gi|269202832|ref|YP_003282101.1| sun protein [Staphylococcus aureus subsp. aureus ED98]
gi|282892703|ref|ZP_06300938.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus A8117]
gi|282919999|ref|ZP_06327728.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus A9765]
gi|282927557|ref|ZP_06335173.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus A10102]
gi|284024141|ref|ZP_06378539.1| sun protein [Staphylococcus aureus subsp. aureus 132]
gi|294848210|ref|ZP_06788957.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus A9754]
gi|296275238|ref|ZP_06857745.1| sun protein [Staphylococcus aureus subsp. aureus MR1]
gi|297245959|ref|ZP_06929818.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus A8796]
gi|384861811|ref|YP_005744531.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus str. JKD6008]
gi|384864444|ref|YP_005749803.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus ECT-R 2]
gi|384869751|ref|YP_005752465.1| SA1060 protein [Staphylococcus aureus subsp. aureus T0131]
gi|415686404|ref|ZP_11450493.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus aureus subsp.
aureus CGS01]
gi|415691064|ref|ZP_11453303.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus aureus subsp.
aureus CGS03]
gi|417650916|ref|ZP_12300679.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21172]
gi|417892141|ref|ZP_12536195.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21201]
gi|418286418|ref|ZP_12899064.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21209]
gi|418317747|ref|ZP_12929163.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21232]
gi|418321722|ref|ZP_12933061.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus VCU006]
gi|418424357|ref|ZP_12997479.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus VRS1]
gi|418427352|ref|ZP_13000364.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus VRS2]
gi|418430193|ref|ZP_13003109.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus VRS3a]
gi|418433154|ref|ZP_13005934.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus VRS4]
gi|418436829|ref|ZP_13008631.1| sun- sun protein ribosomal RNA small subunit methyltransferase B
[Staphylococcus aureus subsp. aureus VRS5]
gi|418439700|ref|ZP_13011408.1| sun- sun protein ribosomal RNA small subunit methyltransferase B
[Staphylococcus aureus subsp. aureus VRS6]
gi|418442753|ref|ZP_13014355.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus VRS7]
gi|418445812|ref|ZP_13017288.1| sun- sun protein ribosomal RNA small subunit methyltransferase B
[Staphylococcus aureus subsp. aureus VRS8]
gi|418448756|ref|ZP_13020148.1| sun- sun protein ribosomal RNA small subunit methyltransferase B
[Staphylococcus aureus subsp. aureus VRS9]
gi|418451580|ref|ZP_13022914.1| sun- sun protein ribosomal RNA small subunit methyltransferase B
[Staphylococcus aureus subsp. aureus VRS10]
gi|418454636|ref|ZP_13025898.1| sun- sun protein ribosomal RNA small subunit methyltransferase B
[Staphylococcus aureus subsp. aureus VRS11a]
gi|418457512|ref|ZP_13028715.1| sun- sun protein ribosomal RNA small subunit methyltransferase B
[Staphylococcus aureus subsp. aureus VRS11b]
gi|418569097|ref|ZP_13133437.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21272]
gi|418570824|ref|ZP_13135085.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21283]
gi|418579048|ref|ZP_13143143.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG1114]
gi|418599666|ref|ZP_13163146.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21343]
gi|418642849|ref|ZP_13205035.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus IS-24]
gi|418647673|ref|ZP_13209736.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus IS-88]
gi|418658916|ref|ZP_13220613.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus IS-111]
gi|418663118|ref|ZP_13224643.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus IS-122]
gi|418873545|ref|ZP_13427840.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus IS-125]
gi|418875152|ref|ZP_13429412.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIGC93]
gi|418878066|ref|ZP_13432301.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG1165]
gi|418880894|ref|ZP_13435113.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG1213]
gi|418883823|ref|ZP_13438018.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG1769]
gi|418886478|ref|ZP_13440626.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG1150]
gi|418894916|ref|ZP_13449011.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG1057]
gi|418903426|ref|ZP_13457467.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG1770]
gi|418906152|ref|ZP_13460179.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIGC345D]
gi|418911823|ref|ZP_13465806.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG547]
gi|418920294|ref|ZP_13474227.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIGC348]
gi|418925450|ref|ZP_13479352.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG2018]
gi|418928474|ref|ZP_13482360.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG1612]
gi|418931287|ref|ZP_13485128.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG1750]
gi|418946950|ref|ZP_13499349.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus IS-157]
gi|418955443|ref|ZP_13507383.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus IS-189]
gi|418991079|ref|ZP_13538740.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG1096]
gi|419775209|ref|ZP_14301151.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CO-23]
gi|419784875|ref|ZP_14310634.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus IS-M]
gi|422742333|ref|ZP_16796339.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus MRSA177]
gi|422745553|ref|ZP_16799492.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus MRSA131]
gi|424768720|ref|ZP_18195980.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CM05]
gi|424785047|ref|ZP_18211850.1| Ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus CN79]
gi|440707204|ref|ZP_20887904.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21282]
gi|443636962|ref|ZP_21121055.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21236]
gi|448744035|ref|ZP_21725939.1| sun protein [Staphylococcus aureus KT/Y21]
gi|57285972|gb|AAW38066.1| sun protein [Staphylococcus aureus subsp. aureus COL]
gi|147740777|gb|ABQ49075.1| sun protein [Staphylococcus aureus subsp. aureus JH9]
gi|149946218|gb|ABR52154.1| sun protein [Staphylococcus aureus subsp. aureus JH1]
gi|150374139|dbj|BAF67399.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
str. Newman]
gi|160368198|gb|ABX29169.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus aureus subsp.
aureus USA300_TCH1516]
gi|257789699|gb|EEV28039.1| ribosomal small subunit methyltransferase B [Staphylococcus aureus
A9781]
gi|257839287|gb|EEV63761.1| RNA-binding Sun protein [Staphylococcus aureus A9763]
gi|257844283|gb|EEV68665.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus A9719]
gi|257847999|gb|EEV71992.1| ribosomal RNA small subunit methyltransferase [Staphylococcus
aureus A9299]
gi|257850047|gb|EEV74000.1| ribosomal RNA small subunit methyltransferase [Staphylococcus
aureus A8115]
gi|257853804|gb|EEV76763.1| RNA-binding Sun protein [Staphylococcus aureus A6300]
gi|257857443|gb|EEV80341.1| RNA-binding Sun protein [Staphylococcus aureus A6224]
gi|257859732|gb|EEV82574.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus A5948]
gi|257863217|gb|EEV85981.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus A5937]
gi|262075122|gb|ACY11095.1| sun protein [Staphylococcus aureus subsp. aureus ED98]
gi|282590560|gb|EFB95637.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus A10102]
gi|282594715|gb|EFB99699.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus A9765]
gi|282764700|gb|EFC04825.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus A8117]
gi|294825010|gb|EFG41432.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus A9754]
gi|297177123|gb|EFH36377.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus A8796]
gi|302751040|gb|ADL65217.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus str. JKD6008]
gi|312829611|emb|CBX34453.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus ECT-R 2]
gi|315131008|gb|EFT86992.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus aureus subsp.
aureus CGS03]
gi|315198454|gb|EFU28783.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus aureus subsp.
aureus CGS01]
gi|320140968|gb|EFW32815.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus MRSA131]
gi|320144317|gb|EFW36083.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus MRSA177]
gi|329313886|gb|AEB88299.1| SA1060 protein [Staphylococcus aureus subsp. aureus T0131]
gi|329727100|gb|EGG63556.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21172]
gi|341858108|gb|EGS98909.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21201]
gi|365167126|gb|EHM58602.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21209]
gi|365224337|gb|EHM65602.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus VCU006]
gi|365245015|gb|EHM85667.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21232]
gi|371978282|gb|EHO95532.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21272]
gi|371983004|gb|EHP00152.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21283]
gi|374396324|gb|EHQ67565.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21343]
gi|375015962|gb|EHS09606.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus IS-24]
gi|375029383|gb|EHS22711.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus IS-88]
gi|375034751|gb|EHS27901.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus IS-122]
gi|375037178|gb|EHS30230.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus IS-111]
gi|375366082|gb|EHS70094.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus IS-125]
gi|375370926|gb|EHS74718.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus IS-189]
gi|375377147|gb|EHS80637.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus IS-157]
gi|377694188|gb|EHT18553.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG1165]
gi|377694722|gb|EHT19086.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG1057]
gi|377697075|gb|EHT21430.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG1114]
gi|377714569|gb|EHT38768.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG1750]
gi|377714910|gb|EHT39108.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG1769]
gi|377723201|gb|EHT47326.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG1096]
gi|377725201|gb|EHT49316.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG547]
gi|377725431|gb|EHT49544.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG1150]
gi|377731787|gb|EHT55840.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG1213]
gi|377738386|gb|EHT62395.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG1612]
gi|377742441|gb|EHT66426.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG1770]
gi|377744519|gb|EHT68496.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG2018]
gi|377765452|gb|EHT89302.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIGC345D]
gi|377765653|gb|EHT89502.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIGC348]
gi|377770212|gb|EHT93974.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIGC93]
gi|383363633|gb|EID40964.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus IS-M]
gi|383970893|gb|EID86983.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CO-23]
gi|387718588|gb|EIK06546.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus VRS3a]
gi|387718939|gb|EIK06895.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus VRS2]
gi|387720264|gb|EIK08176.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus VRS1]
gi|387725820|gb|EIK13418.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus VRS4]
gi|387727933|gb|EIK15433.1| sun- sun protein ribosomal RNA small subunit methyltransferase B
[Staphylococcus aureus subsp. aureus VRS5]
gi|387730803|gb|EIK18161.1| sun- sun protein ribosomal RNA small subunit methyltransferase B
[Staphylococcus aureus subsp. aureus VRS6]
gi|387735740|gb|EIK22850.1| sun- sun protein ribosomal RNA small subunit methyltransferase B
[Staphylococcus aureus subsp. aureus VRS8]
gi|387737418|gb|EIK24484.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus VRS7]
gi|387737972|gb|EIK25026.1| sun- sun protein ribosomal RNA small subunit methyltransferase B
[Staphylococcus aureus subsp. aureus VRS9]
gi|387744461|gb|EIK31225.1| sun- sun protein ribosomal RNA small subunit methyltransferase B
[Staphylococcus aureus subsp. aureus VRS10]
gi|387745751|gb|EIK32501.1| sun- sun protein ribosomal RNA small subunit methyltransferase B
[Staphylococcus aureus subsp. aureus VRS11a]
gi|387747244|gb|EIK33953.1| sun- sun protein ribosomal RNA small subunit methyltransferase B
[Staphylococcus aureus subsp. aureus VRS11b]
gi|402348490|gb|EJU83477.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CM05]
gi|421956457|gb|EKU08786.1| Ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus CN79]
gi|436506243|gb|ELP42076.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21282]
gi|443406939|gb|ELS65509.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21236]
gi|445562631|gb|ELY18798.1| sun protein [Staphylococcus aureus KT/Y21]
Length = 435
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 129/428 (30%), Positives = 214/428 (50%), Gaps = 58/428 (13%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTF--SSMEPLLLQILRIGFYEIVK 163
+L+ D L T+IV GT++ + LD + K F + ++ + Q+L + Y+ V
Sbjct: 35 ELNAMDKALFTEIVYGTVKRKYTLDFYL-------KPFVKTKIKAWVRQLLWMSIYQYVY 87
Query: 164 LD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVL--LKDNNSLPLPKLEGNDRAQA 220
LD +P +A+++E V +AK GN+VNGILR ++ L D N + PK
Sbjct: 88 LDKVPNHAIINEAVEIAKERGGYHNGNVVNGILRTMMRSDLPDFNEIADPK--------- 138
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADL-----V 275
+ +A YS P W++ W + G EE ++ S ++RAN +TRA L
Sbjct: 139 KRMAIEYSMPKWIIDHWATHYGLEETETILQSFLETTSTTVRAN----LTRASLDDIIEK 194
Query: 276 MQLNLLKLQVPHEL--SLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDP 333
+Q ++ H+L LH+ G Q +I + K+G ++QD+S+ V +++
Sbjct: 195 LQDEGYDVEKDHDLPYCLHI--------GGQPIIHSRSFKDGFVSIQDKSSMFVAHIMNV 246
Query: 334 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILN-ETAKLHQVNSVIRTI 392
++D C+APGGK ++A L +G V A DI+ ++ ++N KL N I+
Sbjct: 247 DRHDHVLDACSAPGGKACHIAEVLMPEGQVDASDIHDHKIDLINFNIKKLRLTN--IKAF 304
Query: 393 HADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAAS 452
D D + DK+L+DAPCSGLGV+ + ++++ + + +E L LQ E+L+
Sbjct: 305 QHDATKPYDKT---YDKILVDAPCSGLGVMRHKPEIKYTQSKQHIESLVELQLEILENVK 361
Query: 453 LLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADG-----------LVPSDFV 501
VK GG ++YSTC+I+ ENE + FL + F +P ++P DF
Sbjct: 362 NNVKIGGEIIYSTCTIEQLENENVIYTFLKNNKNFEFEPFQHPITGELVKTLQIMPQDF- 420
Query: 502 TKHGFFFS 509
GFF +
Sbjct: 421 NSDGFFIT 428
>gi|254784303|ref|YP_003071731.1| ribosomal RNA small subunit methyltransferase B [Teredinibacter
turnerae T7901]
gi|237683392|gb|ACR10656.1| ribosomal RNA small subunit methyltransferase B [Teredinibacter
turnerae T7901]
Length = 433
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 125/422 (29%), Positives = 211/422 (50%), Gaps = 23/422 (5%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDM 166
LD+RD L ++ GT+RW L+ + L +K + + + +L IG Y++ L +
Sbjct: 33 LDERDRGLFQELCYGTLRWYHRLEAIAGELL--QKPLRNKDQDVYALLLIGLYQLEYLRV 90
Query: 167 PPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATI 226
P +A + E V ++ +P A L+NG LR +D + K+ G +A
Sbjct: 91 PDHAAISETVNASRALKKPWASGLLNGALRSFQ--RDREQI-FKKISGKPQAS------- 140
Query: 227 YSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVP 286
+SHP W+V R + G +A +++ NN P LR N ++ +R + +++L LQ
Sbjct: 141 FSHPNWLVARLQQSWG-AQASRILHANNQQPPVCLRVNLKRQ-SRDEYLVKLQQAGLQAQ 198
Query: 287 HELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAP 346
S +R+ + L ++ Q EGL +VQDE+A L ++ +PGQ ++D C AP
Sbjct: 199 PLASS--PSAVRLLSPL-DIQQLPGFSEGLVSVQDEAAQLAAYLLALEPGQRVLDACCAP 255
Query: 347 GGKTLYMASCLSGQGLVYAIDINKGRL-RILNETAKLHQVNSVIRTIHADLRTFADNSTV 405
GGK+ ++ + +D + R+ R+ A+L + + T A + +N
Sbjct: 256 GGKSCHILEAEPALTELVCLDSEQDRMARVEENLARLQLSGATLTTGDASTCQWWNNQPF 315
Query: 406 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465
D+VLLD PCS GV+ + D++ RR +D+ +L LQ +L+ ++KPGG+LVY+T
Sbjct: 316 --DRVLLDVPCSATGVIRRHPDIKLLRREDDLAKLSALQQAILNNVWQMLKPGGLLVYAT 373
Query: 466 CSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARLV 525
CS+ PEEN E + F+ H + + P D + P DG + ARL+
Sbjct: 374 CSVLPEENSELITQFVTDHKDAELAPMDADWGIEQPAGRQLL---PQLEGPDGFYYARLI 430
Query: 526 RA 527
+A
Sbjct: 431 KA 432
>gi|315917987|ref|ZP_07914227.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium gonidiaformans
ATCC 25563]
gi|313691862|gb|EFS28697.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium gonidiaformans
ATCC 25563]
Length = 440
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 114/387 (29%), Positives = 197/387 (50%), Gaps = 23/387 (5%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
F K + +T++ G IR + YLD++I +K + L Q+ R+ FY+I
Sbjct: 28 FHRKVFKKGEKNFITEVFYGVIRNKIYLDYMI-----SQKVKEVKKDWLQQLFRLSFYQI 82
Query: 162 VKLDMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQAR 221
+ V+ E V LAK VNG+LR N + E N + + R
Sbjct: 83 RFMKSDDKGVIWEGVELAKKKYGVSVSRFVNGVLR-------NFQRSFIEEEENLKREGR 135
Query: 222 ALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLL 281
++S+P W + K E I+++ P S+R N K + L
Sbjct: 136 E-EVLFSYPKWFFEQ-IKKESPERYIEILKSLKRTPLLSVRVNLLKYSCEE---FEEYLR 190
Query: 282 KLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVD 341
K ++ E+ ++ K G N++ + +EG VQD ++ L + +PG+ ++D
Sbjct: 191 KEEI--EIIKKVETIYYTKAG--NLLNSSEFQEGKIIVQDAASYLAAKNLGAKPGEIVLD 246
Query: 342 CCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD 401
C+APGGKT +A + +G + ++DI+ +++++ E K + ++++ + D R +
Sbjct: 247 TCSAPGGKTSVLAEAMKNEGQILSLDIHTHKIKLIQENCKKLGI-TIVQAVKLDARHLSL 305
Query: 402 NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVL 461
K D++L+DAPCSG GVL+K+ + +N++ E+++EL LQ E+L AA+ ++K GG +
Sbjct: 306 QGK-KFDRILVDAPCSGYGVLAKKPEGLYNKKEENIKELVTLQREILMAAAEVLKVGGEM 364
Query: 462 VYSTCSIDPEENEERVEAFLLRHPEFS 488
VYSTC+I P EN+E + FL HP F
Sbjct: 365 VYSTCTILPAENQENAKWFLETHPNFE 391
>gi|449883629|ref|ZP_21785299.1| putative RNA-binding Sun protein [Streptococcus mutans SA38]
gi|449249709|gb|EMC47816.1| putative RNA-binding Sun protein [Streptococcus mutans SA38]
Length = 437
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 125/420 (29%), Positives = 218/420 (51%), Gaps = 44/420 (10%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L D L+T++V GT+ + L+ + D + +E + +L + Y+I+ LD
Sbjct: 39 LSQADRSLLTELVYGTLTRKITLEWYLAHYIEDR---NKLETWIYYLLMLSLYQILYLDK 95
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P +A+V+E V LAK R GA LVN +LR+ + K P + R R T
Sbjct: 96 IPQHAIVNEAVDLAKSRNR-GAEKLVNAVLRQFLRQKR------PDITVIKRKNKRYSIT 148
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
YS PVW+V++ G++ AI ++ S +R+ + V D Q+ ++
Sbjct: 149 -YSVPVWLVKKMIDQFGEDRAISIL------KSLLVRSKASIRVVNPD---QIEVIAKTT 198
Query: 286 PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAA 345
+ S+ L VK Q + L K+G +QDES+ LV + + ++++D C+A
Sbjct: 199 GAKKSV-LSPCGLVKASGQ-FFDSDLFKQGKITIQDESSQLVAPTLAIKGNETVLDACSA 256
Query: 346 PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT----FAD 401
PGGK +++AS L+ G + A+D+ +L+++ + A + + I+ D R FA
Sbjct: 257 PGGKAVHIASYLTT-GQIIALDLYDHKLKLIKDNADRLKAANYIKPQKLDARKVHKYFAK 315
Query: 402 NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVL 461
++ DK+L+DAPCSG+G++ ++ D+++N+ +D L+ +Q E+LD+ +K GG++
Sbjct: 316 DT---FDKILVDAPCSGIGLIRRKPDIKYNKDSKDFTSLQKIQLEILDSVCQTIKKGGII 372
Query: 462 VYSTCSIDPEENEERVEAFLLRHPEFS------------IDPADGLVPSDFVTKHGFFFS 509
YSTC+I EEN+ ++ FL +HP F +D + P ++T GFF S
Sbjct: 373 TYSTCTIFAEENQMVLKQFLEQHPNFEQVKLNHKKKDIVVDGCLLITPEQYLT-DGFFIS 431
>gi|270293272|ref|ZP_06199483.1| sun protein [Streptococcus sp. M143]
gi|270279251|gb|EFA25097.1| sun protein [Streptococcus sp. M143]
Length = 437
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 134/394 (34%), Positives = 205/394 (52%), Gaps = 55/394 (13%)
Query: 111 DLRLVTDIVGGTI------RWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
D LVT+IV GT+ W YL H I + ++ L +L + Y++ L
Sbjct: 42 DKGLVTEIVYGTVARKLTLEW--YLSHFI-------EDRDKLDNWLYILLLLSAYQLRYL 92
Query: 165 D-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARAL 223
D +P +AVV+E V LAK A + G+ LVN +LR++ L++ P ++ R R
Sbjct: 93 DKVPNHAVVNEAVELAK-ARKKGSEKLVNAVLRRI--LREG----WPDIDSIKRKNKRD- 144
Query: 224 ATIYSHPVWMVRRWTKYLGQEEAI----KLMVWNNSDPSFSLRANSRKGVTRADLVMQLN 279
+ YS PVW+V + + G+E A L+V N + S + SRK +A L +
Sbjct: 145 SIAYSLPVWLVSKLKEEYGEERAQAIFDSLLVRNKA--SIRVTDLSRKEEIKAVLEASDS 202
Query: 280 LLKLQVPHELSLHLDEFIRVKTGLQNVIQAG--LLKEGLCAVQDESAGLVVAVVDPQPGQ 337
LL + + H AG L EG +QDES+ LV +D Q +
Sbjct: 203 LLAVSGLVKEQGHF---------------AGHDLFAEGAITIQDESSQLVAPTLDLQGDE 247
Query: 338 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR 397
++D CAAPGGKT ++AS L+ G+V A+D+ +L ++ E A+ V ++T D R
Sbjct: 248 QVLDACAAPGGKTAHIASYLTS-GMVTALDLYDHKLDLIQENAQRLGVADRVQTQKLDAR 306
Query: 398 T----FADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASL 453
F +S DK+L+DAPCSG+G+L ++ D+++N+ D L+ +Q E+L +
Sbjct: 307 KVHEFFEKDS---FDKILVDAPCSGIGLLRRKPDIKYNKETADFASLQQIQLEILGSVCQ 363
Query: 454 LVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEF 487
++ GG++ YSTC+I EEN VEAFL HPEF
Sbjct: 364 TLRKGGIITYSTCTIVSEENFHVVEAFLESHPEF 397
>gi|290581015|ref|YP_003485407.1| RNA-binding Sun protein [Streptococcus mutans NN2025]
gi|449968923|ref|ZP_21812909.1| putative RNA-binding Sun protein [Streptococcus mutans 2VS1]
gi|254997914|dbj|BAH88515.1| putative RNA-binding Sun protein [Streptococcus mutans NN2025]
gi|449174570|gb|EMB77049.1| putative RNA-binding Sun protein [Streptococcus mutans 2VS1]
Length = 440
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 125/420 (29%), Positives = 218/420 (51%), Gaps = 44/420 (10%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L D L+T++V GT+ + L+ + D + +E + +L + Y+I+ LD
Sbjct: 42 LSQADRSLLTELVYGTLTRKITLEWYLAHYIEDR---NKLETWIYYLLMLSLYQILYLDK 98
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P +A+V+E V LAK R GA LVN +LR+ + K P + R R T
Sbjct: 99 IPQHAIVNEAVDLAKSRNR-GAEKLVNAVLRQFLRQKR------PDITVIKRKNKRYSIT 151
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
YS PVW+V++ G++ AI ++ S +R+ + V D Q+ ++
Sbjct: 152 -YSVPVWLVKKMISQFGEDRAISIL------KSLLVRSKASIRVVNPD---QIEVIAKAT 201
Query: 286 PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAA 345
+ S+ L VK Q + L K+G +QDES+ LV + + ++++D C+A
Sbjct: 202 GAKKSV-LSPCGLVKASGQ-FFDSDLFKQGKITIQDESSQLVAPTLAIKGNETVLDACSA 259
Query: 346 PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT----FAD 401
PGGK +++AS L+ G + A+D+ +L+++ + A + + I+ D R FA
Sbjct: 260 PGGKAVHIASYLTT-GQIIALDLYDHKLKLIKDNADRLKAANYIKPQKLDARKVHKYFAK 318
Query: 402 NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVL 461
++ DK+L+DAPCSG+G++ ++ D+++N+ +D L+ +Q E+LD+ +K GG++
Sbjct: 319 DT---FDKILVDAPCSGIGLIRRKPDIKYNKDSKDFTSLQKIQLEILDSVCQTIKKGGII 375
Query: 462 VYSTCSIDPEENEERVEAFLLRHPEFS------------IDPADGLVPSDFVTKHGFFFS 509
YSTC+I EEN+ ++ FL +HP F +D + P ++T GFF S
Sbjct: 376 TYSTCTIFAEENQMVLKQFLEQHPNFEQVKLNHKKKDIVVDGCLLITPEQYLT-DGFFIS 434
>gi|450044866|ref|ZP_21838121.1| putative RNA-binding Sun protein [Streptococcus mutans N34]
gi|449201187|gb|EMC02194.1| putative RNA-binding Sun protein [Streptococcus mutans N34]
Length = 437
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 125/420 (29%), Positives = 218/420 (51%), Gaps = 44/420 (10%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L D L+T++V GT+ + L+ + D + +E + +L + Y+I+ LD
Sbjct: 39 LSQADRSLLTELVYGTLTRKITLEWYLAHYIEDR---NKLETWIYYLLMLSLYQILYLDK 95
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P +A+V+E V LAK R GA LVN +LR+ + K P + R R T
Sbjct: 96 IPQHAIVNEAVDLAKSRNR-GAEKLVNAVLRQFLRQKR------PDITVIKRKNKRYSIT 148
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
YS PVW+V++ G++ AI ++ S +R+ + V D Q+ ++
Sbjct: 149 -YSVPVWLVKKMVDQFGEDRAISIL------KSLLVRSKASIRVVNPD---QIEVIAKAT 198
Query: 286 PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAA 345
+ S+ L VK Q + L K+G +QDES+ LV + + ++++D C+A
Sbjct: 199 GAKKSV-LSPCGLVKASGQ-FFDSDLFKQGKITIQDESSQLVAPTLAIKGNETVLDACSA 256
Query: 346 PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT----FAD 401
PGGK +++AS L+ G + A+D+ +L+++ + A + + I+ D R FA
Sbjct: 257 PGGKAVHIASYLTT-GQIIALDLYDHKLKLIKDNADRLKAANYIKPQKLDARKVHKYFAK 315
Query: 402 NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVL 461
++ DK+L+DAPCSG+G++ ++ D+++N+ +D L+ +Q E+LD+ +K GG++
Sbjct: 316 DT---FDKILVDAPCSGIGLIRRKPDIKYNKDSKDFTSLQKIQLEILDSVCQTIKKGGII 372
Query: 462 VYSTCSIDPEENEERVEAFLLRHPEFS------------IDPADGLVPSDFVTKHGFFFS 509
YSTC+I EEN+ ++ FL +HP F +D + P ++T GFF S
Sbjct: 373 TYSTCTIFAEENQMVLKQFLEQHPNFEQVKLNHKKKDIVVDGCLLITPEQYLT-DGFFIS 431
>gi|82750821|ref|YP_416562.1| RNA-binding protein [Staphylococcus aureus RF122]
gi|82656352|emb|CAI80770.1| probable RNA-binding protein [Staphylococcus aureus RF122]
Length = 435
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 129/428 (30%), Positives = 214/428 (50%), Gaps = 58/428 (13%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTF--SSMEPLLLQILRIGFYEIVK 163
+L+ D L T+IV GT++ + LD + K F + ++ + Q+L + Y+ V
Sbjct: 35 ELNAMDKALFTEIVYGTVKRKYTLDFYL-------KPFVKTKIKAWVRQLLWMSIYQYVY 87
Query: 164 LD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVL--LKDNNSLPLPKLEGNDRAQA 220
LD +P +A+++E V +AK GN+VNGILR ++ L D N + PK
Sbjct: 88 LDKVPNHAIINEAVEIAKERGGYHNGNVVNGILRTMMRSDLPDFNEIADPK--------- 138
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADL-----V 275
+ +A YS P W++ W + G EE ++ S ++RAN +TRA L
Sbjct: 139 KRMAVEYSMPKWIIDHWATHYGLEETETILQSFLETTSTTVRAN----LTRASLDDIIEK 194
Query: 276 MQLNLLKLQVPHEL--SLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDP 333
+Q ++ H+L LH+ G Q +I + K+G ++QD+S+ V +++
Sbjct: 195 LQDEGYDVEKDHDLPYCLHI--------GGQPIIHSRSFKDGFVSIQDKSSMFVAHIMNV 246
Query: 334 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILN-ETAKLHQVNSVIRTI 392
++D C+APGGK ++A L +G V A DI+ ++ ++N KL N I+
Sbjct: 247 DRHDHVLDACSAPGGKACHIAEVLMPEGQVGASDIHDHKIDLINFNIKKLRLTN--IKAF 304
Query: 393 HADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAAS 452
D D + DK+L+DAPCSGLGV+ + ++++ + + +E L LQ E+L+
Sbjct: 305 QHDATKPYDKT---YDKILVDAPCSGLGVMRHKPEIKYTQSKQHIESLVDLQLEILENVK 361
Query: 453 LLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADG-----------LVPSDFV 501
VK GG ++YSTC+I+ ENE + FL + F +P ++P DF
Sbjct: 362 NNVKIGGEIIYSTCTIEQLENENVIYTFLKNNKNFEFEPFQHPITGELVKTLQIMPQDF- 420
Query: 502 TKHGFFFS 509
GFF +
Sbjct: 421 NSDGFFIT 428
>gi|251788002|ref|YP_003002723.1| 16S rRNA methyltransferase B [Dickeya zeae Ech1591]
gi|247536623|gb|ACT05244.1| sun protein [Dickeya zeae Ech1591]
Length = 431
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 132/426 (30%), Positives = 211/426 (49%), Gaps = 33/426 (7%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
+D+ ++D L+ +I G +R LD + L K + + +L +L +G Y+++
Sbjct: 34 RDISEKDRGLLQEICFGVLRVLPQLDWYLRQLM--AKPLTGKQKVLHYLLMVGIYQLIHT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+PP+A + E V A RP L+NG+LR+ ++ + N+ A+
Sbjct: 92 RIPPHAALAETVNAAVTLKRPQLKGLINGVLRQFQRQQEELQ----QRLQNNTAR----- 142
Query: 225 TIYSHPVWMVRRWTK-YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKL 283
YSHP W+++R K Y Q E I + NN P LR N A LV+
Sbjct: 143 --YSHPDWLLQRLKKAYPDQWEQI--IDANNQHPPMWLRVNRLHHSREAYLVLLQEKGIE 198
Query: 284 QVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCC 343
PH + IR+ T G +G VQD SA + + P+ + I+D C
Sbjct: 199 AHPHPF---YTDAIRLITPCAVSGLPGF-DQGWVTVQDASAQGCIHWLSPKNHEDILDLC 254
Query: 344 AAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS 403
AAPGGKT ++ + Q V A+D+++ RL+ + E + ++++ ++ D RT
Sbjct: 255 AAPGGKTTHILEA-APQARVLAVDVDEQRLKRVKENLQRLRLHADVKC--GDGRTPEAWC 311
Query: 404 TVKC-DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLV 462
+C D++LLDAPCS GV+ + D++W RR D+ EL LQ +L+A +K GG LV
Sbjct: 312 ADQCFDRILLDAPCSATGVIRRHPDIKWLRRDSDIAELASLQQAILEAIWPRLKNGGTLV 371
Query: 463 YSTCSIDPEENEERVEAFLLRHPEFSI-DPADGLVPSDFVTKHGFFFSDPIKHSLDGAFA 521
Y+TCS+ PEEN +++ AFL HP+ + D + P V P+ DG F
Sbjct: 372 YATCSVLPEENSQQIAAFLQHHPDAILADTGNTTSPGIQVL--------PMPEDGDGFFY 423
Query: 522 ARLVRA 527
A+LV++
Sbjct: 424 AKLVKS 429
>gi|379020926|ref|YP_005297588.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus M013]
gi|418950782|ref|ZP_13502925.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus IS-160]
gi|359830235|gb|AEV78213.1| Ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus M013]
gi|375375613|gb|EHS79186.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus IS-160]
Length = 435
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 129/428 (30%), Positives = 214/428 (50%), Gaps = 58/428 (13%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTF--SSMEPLLLQILRIGFYEIVK 163
+L+ D L T+IV GT++ + LD + K F + ++ + Q+L + Y+ V
Sbjct: 35 ELNVMDKALFTEIVYGTVKRKYTLDFYL-------KPFVKTKIKAWVRQLLWMSIYQYVY 87
Query: 164 LD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVL--LKDNNSLPLPKLEGNDRAQA 220
LD +P +A+++E V +AK GN+VNGILR ++ L D N + PK
Sbjct: 88 LDKVPNHAIINEAVEIAKERGGYHNGNVVNGILRTMMRSDLPDFNEIADPK--------- 138
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADL-----V 275
+ +A YS P W++ W + G EE ++ S ++RAN +TRA L
Sbjct: 139 KRMAIEYSMPKWIIDHWATHFGLEETETILQSFLETTSTTVRAN----LTRASLDDIIEK 194
Query: 276 MQLNLLKLQVPHEL--SLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDP 333
+Q ++ H+L LH+ G Q +I + K+G ++QD+S+ V +++
Sbjct: 195 LQDEGYNVEKDHDLPYCLHI--------GGQPIIHSRSFKDGFVSIQDKSSMFVAHIMNV 246
Query: 334 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILN-ETAKLHQVNSVIRTI 392
++D C+APGGK ++A L +G V A DI+ ++ ++N KL N I+
Sbjct: 247 DRHDHVLDACSAPGGKACHIAEVLMPEGQVDASDIHDHKIDLINFNIKKLRLTN--IKAF 304
Query: 393 HADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAAS 452
D D + DK+L+DAPCSGLGV+ + ++++ + + +E L LQ E+L+
Sbjct: 305 QHDATKPYDKT---YDKILVDAPCSGLGVMRHKPEIKYTQSKQHIESLVDLQLEILENVK 361
Query: 453 LLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADG-----------LVPSDFV 501
VK GG ++YSTC+I+ ENE + FL + F +P ++P DF
Sbjct: 362 NNVKIGGEIIYSTCTIEQLENENVIYTFLKNNKNFEFEPFQHPITGELVKTLQIMPQDF- 420
Query: 502 TKHGFFFS 509
GFF +
Sbjct: 421 NSDGFFIT 428
>gi|449920121|ref|ZP_21798309.1| putative RNA-binding Sun protein [Streptococcus mutans 1SM1]
gi|449935469|ref|ZP_21803397.1| putative RNA-binding Sun protein [Streptococcus mutans 2ST1]
gi|450028301|ref|ZP_21832039.1| putative RNA-binding Sun protein [Streptococcus mutans G123]
gi|450051010|ref|ZP_21840582.1| putative RNA-binding Sun protein [Streptococcus mutans NFSM1]
gi|450056501|ref|ZP_21842050.1| putative RNA-binding Sun protein [Streptococcus mutans NLML4]
gi|450067975|ref|ZP_21846899.1| putative RNA-binding Sun protein [Streptococcus mutans NLML9]
gi|450149461|ref|ZP_21876168.1| putative RNA-binding Sun protein [Streptococcus mutans 14D]
gi|450155076|ref|ZP_21878053.1| putative RNA-binding Sun protein [Streptococcus mutans 21]
gi|450165842|ref|ZP_21882012.1| putative RNA-binding Sun protein [Streptococcus mutans B]
gi|450180622|ref|ZP_21887317.1| putative RNA-binding Sun protein [Streptococcus mutans 24]
gi|449158914|gb|EMB62312.1| putative RNA-binding Sun protein [Streptococcus mutans 1SM1]
gi|449166601|gb|EMB69533.1| putative RNA-binding Sun protein [Streptococcus mutans 2ST1]
gi|449195714|gb|EMB97023.1| putative RNA-binding Sun protein [Streptococcus mutans G123]
gi|449202141|gb|EMC03080.1| putative RNA-binding Sun protein [Streptococcus mutans NFSM1]
gi|449206624|gb|EMC07320.1| putative RNA-binding Sun protein [Streptococcus mutans NLML4]
gi|449207663|gb|EMC08331.1| putative RNA-binding Sun protein [Streptococcus mutans NLML9]
gi|449234569|gb|EMC33574.1| putative RNA-binding Sun protein [Streptococcus mutans 14D]
gi|449237446|gb|EMC36294.1| putative RNA-binding Sun protein [Streptococcus mutans 21]
gi|449240192|gb|EMC38879.1| putative RNA-binding Sun protein [Streptococcus mutans B]
gi|449248029|gb|EMC46292.1| putative RNA-binding Sun protein [Streptococcus mutans 24]
Length = 437
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 125/420 (29%), Positives = 218/420 (51%), Gaps = 44/420 (10%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L D L+T++V GT+ + L+ + D + +E + +L + Y+I+ LD
Sbjct: 39 LSQADRSLLTELVYGTLTRKITLEWYLAHYIEDR---NKLETWIYYLLMLSLYQILYLDK 95
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P +A+V+E V LAK R GA LVN +LR+ + K P + R R T
Sbjct: 96 IPQHAIVNEAVDLAKSRNR-GAEKLVNAVLRQFLRQKR------PDITVIKRKNKRYSIT 148
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
YS PVW+V++ G++ AI ++ S +R+ + V D Q+ ++
Sbjct: 149 -YSVPVWLVKKMISQFGEDRAISIL------KSLLVRSKASIRVVNPD---QIEVIAKAT 198
Query: 286 PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAA 345
+ S+ L VK Q + L K+G +QDES+ LV + + ++++D C+A
Sbjct: 199 GAKKSV-LSPCGLVKASGQ-FFDSDLFKQGKITIQDESSQLVAPTLAIKGNETVLDACSA 256
Query: 346 PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT----FAD 401
PGGK +++AS L+ G + A+D+ +L+++ + A + + I+ D R FA
Sbjct: 257 PGGKAVHIASYLTT-GQIIALDLYDHKLKLIKDNADRLKAANYIKPQKLDARKVHKYFAK 315
Query: 402 NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVL 461
++ DK+L+DAPCSG+G++ ++ D+++N+ +D L+ +Q E+LD+ +K GG++
Sbjct: 316 DT---FDKILVDAPCSGIGLIRRKPDIKYNKDSKDFTSLQKIQLEILDSVCQTIKKGGII 372
Query: 462 VYSTCSIDPEENEERVEAFLLRHPEFS------------IDPADGLVPSDFVTKHGFFFS 509
YSTC+I EEN+ ++ FL +HP F +D + P ++T GFF S
Sbjct: 373 TYSTCTIFAEENQMVLKQFLEQHPNFEQVKLNHKKKDIVVDGCLLITPEQYLT-DGFFIS 431
>gi|87161915|ref|YP_493807.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus USA300_FPR3757]
gi|87127889|gb|ABD22403.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus USA300_FPR3757]
Length = 435
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 129/428 (30%), Positives = 214/428 (50%), Gaps = 58/428 (13%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTF--SSMEPLLLQILRIGFYEIVK 163
+L+ D L T+IV GT++ + LD + K F + ++ + Q+L + Y+ V
Sbjct: 35 ELNAMDKALFTEIVYGTVKRKYTLDFYL-------KPFVKTKIKAWVRQLLWMSIYQYVY 87
Query: 164 LD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVL--LKDNNSLPLPKLEGNDRAQA 220
LD +P +A+++E V +AK GN+VNGILR ++ L D N + PK
Sbjct: 88 LDKVPNHAIINEAVEIAKERGGYHNGNVVNGILRTMMRSDLPDFNEIADPK--------- 138
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADL-----V 275
+ +A YS P W++ W + G EE ++ S ++RAN +TRA L
Sbjct: 139 KRMAIEYSMPKWIIDHWATHYGLEETETILQSFLETTSTTVRAN----LTRASLDDIIEK 194
Query: 276 MQLNLLKLQVPHEL--SLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDP 333
+Q ++ H+L LH+ G Q +I + K+G ++QD+S+ V +++
Sbjct: 195 LQDEGYDVEKDHDLPYCLHI--------GGQPIIHSRSFKDGFVSIQDKSSMFVAHIMNV 246
Query: 334 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILN-ETAKLHQVNSVIRTI 392
++D C+APGGK ++A L +G V A DI+ ++ ++N KL N I+
Sbjct: 247 DRHDHVLDACSAPGGKACHIAEVLMPEGQVDASDIHDHKIDLINFNIKKLRLTN--IKAF 304
Query: 393 HADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAAS 452
D D + DK+L+DAPCSGLGV+ + ++++ + + +E L LQ E+L+
Sbjct: 305 QYDATKPYDKT---YDKILVDAPCSGLGVMRHKPEIKYTQSKQHIESLVELQLEILENVK 361
Query: 453 LLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADG-----------LVPSDFV 501
VK GG ++YSTC+I+ ENE + FL + F +P ++P DF
Sbjct: 362 NNVKIGGEIIYSTCTIEQLENENVIYTFLKNNKNFEFEPFQHPITGELVKTLQIMPQDF- 420
Query: 502 TKHGFFFS 509
GFF +
Sbjct: 421 NSDGFFIT 428
>gi|403745318|ref|ZP_10954256.1| sun protein [Alicyclobacillus hesperidum URH17-3-68]
gi|403121546|gb|EJY55839.1| sun protein [Alicyclobacillus hesperidum URH17-3-68]
Length = 449
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 140/433 (32%), Positives = 229/433 (52%), Gaps = 29/433 (6%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
++L DRD L T+I GT+R + +D+L L + + +++E +L ILR+ Y++ L
Sbjct: 34 RELSDRDKALATEIAYGTVRRQLTIDYL--LAPYVRRGLAALEVEILTILRMSVYQLSWL 91
Query: 165 D-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNS----LPLPKLEGNDRAQ 219
+P YAV + V +AK + P + + VN +LR L+D + + + + +D AQ
Sbjct: 92 SRLPAYAVTSDAVDMAK-RVNPRSASFVNAVLRSY--LRDGTDWESRIHVRRTDRDDIAQ 148
Query: 220 ARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLN 279
L+ ++S+P WMV R G+E A ++ N + ++R N RA + +
Sbjct: 149 ---LSLLHSYPRWMVARLVAAYGRERAEAILAAGNRPGATAVRVNP----LRASVESVAS 201
Query: 280 LLKLQVPHEL---SLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPG 336
L Q E+ +L+ D +R+ TG ++ + L G VQDE A L+ ++ P+PG
Sbjct: 202 ALTAQGVGEIERGALY-DGALRI-TGAIDIERLDLYHHGSLTVQDEGAMLIAPLLRPEPG 259
Query: 337 QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLR-ILNETAKLHQVNSVIRTIHAD 395
++D CAAPGGKT +A + G++ A D+ +++ I++ ++LH + +R D
Sbjct: 260 MRVLDMCAAPGGKTTQIAELMRDTGVIDAYDVYISKIQTIVDACSRLHLTS--VRARLGD 317
Query: 396 LRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLV 455
R + N D VL+DAPCSGLGV+ +R D+R R D+ L LQ +LL A +V
Sbjct: 318 GRDVSGNP--PYDAVLVDAPCSGLGVMRRRPDIRQRRTEADVAALTALQTDLLRHACRIV 375
Query: 456 KPGGVLVYSTCSIDPEENEERVEAFLLR-HPEFSIDPADGLVPSDFVTKHGFFFS-DPIK 513
KPGG +VY+TC++ PEENE+ V + S+D VP+ + + P
Sbjct: 376 KPGGYVVYATCTLLPEENEKVVLGVVDELQGAVSLDDIAHDVPAPLAGQVAVGLTLTPDM 435
Query: 514 HSLDGAFAARLVR 526
+ DG + ARL R
Sbjct: 436 FATDGFYMARLRR 448
>gi|124025193|ref|YP_001014309.1| Sun protein (Fmu protein) [Prochlorococcus marinus str. NATL1A]
gi|123960261|gb|ABM75044.1| Sun protein (Fmu protein) [Prochlorococcus marinus str. NATL1A]
Length = 448
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 140/461 (30%), Positives = 226/461 (49%), Gaps = 53/461 (11%)
Query: 64 SAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTI 123
+A +++ GG+FAD+ +ER F D L+T++ G I
Sbjct: 18 AAWEVIQAVGGGSFADVA--------------LERI--FNLYSFKSIDKALITELSYGAI 61
Query: 124 RWRRYLDHLICLLCHDEKTFSSMEP-LLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKV 181
R R YLD C + H K + +P LL +L +G Y+++K+ +PP A ++ V LAK
Sbjct: 62 RQRYYLD---CWIDHLGKVPAKKQPPLLRWLLHLGLYQVLKMKRIPPAAAINTTVELAKT 118
Query: 182 ALRPGAGNLVNGILRK--------LVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWM 233
+VNGILR L+L K NN P LE LA S PVW
Sbjct: 119 HHLRKLAPVVNGILRSALRSKERGLLLPKSNN----PSLE---------LAKNESLPVWF 165
Query: 234 VRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLL-KLQVPHELSLH 292
+ G E A ++ NS +R N RADL L + ++L +
Sbjct: 166 AEELIAWKGVEHAQQIAKAFNSVSPIDIRVNK----LRADLKDVKELFDTCGIQNQLIPN 221
Query: 293 LDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLY 352
+ V+ G+ Q +EG +VQD S+ L+ + P PG+ I+D CAAPGGK+ +
Sbjct: 222 CPSGLEVRAGIGEPRQWPGYEEGKWSVQDRSSQLIAPSLGPLPGEKILDACAAPGGKSTH 281
Query: 353 MASCLSGQGLVYAIDINKGR-LRILNETAKLHQVNSVIRTIHADLRTF---ADNSTVKCD 408
+A ++ +G ++++D + R +IL + +L ++ + AD + D
Sbjct: 282 IAELINNEGNLWSVDRSSRRSKKILANSERLG--TKCLQILVADSNELLLKKPDWKGFFD 339
Query: 409 KVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSI 468
++L+DAPCSGLG L++ D RW +++++L +Q +LL++ + L+K GG LVYSTC+I
Sbjct: 340 RILIDAPCSGLGTLARHPDARWRMNQDNIQQLVAVQSQLLNSLAPLLKNGGKLVYSTCTI 399
Query: 469 DPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFS 509
PEEN +++ FL EF ++ + P + GF+ +
Sbjct: 400 HPEENSHQIKNFLQSKSEFLLEYEKQIWPGEGDNGDGFYIA 440
>gi|15924207|ref|NP_371741.1| RNA-binding Sun protein [Staphylococcus aureus subsp. aureus Mu50]
gi|15926800|ref|NP_374333.1| hypothetical protein SA1060 [Staphylococcus aureus subsp. aureus
N315]
gi|156979538|ref|YP_001441797.1| hypothetical protein SAHV_1207 [Staphylococcus aureus subsp. aureus
Mu3]
gi|387150360|ref|YP_005741924.1| Ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus 04-02981]
gi|13701017|dbj|BAB42312.1| SA1060 [Staphylococcus aureus subsp. aureus N315]
gi|14246987|dbj|BAB57379.1| similar to RNA-binding Sun protein [Staphylococcus aureus subsp.
aureus Mu50]
gi|156721673|dbj|BAF78090.1| hypothetical protein SAHV_1207 [Staphylococcus aureus subsp. aureus
Mu3]
gi|285816899|gb|ADC37386.1| Ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus 04-02981]
Length = 461
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 129/428 (30%), Positives = 215/428 (50%), Gaps = 58/428 (13%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTF--SSMEPLLLQILRIGFYEIVK 163
+L+ D L T+IV GT++ + LD + K F + ++ + Q+L + Y+ V
Sbjct: 61 ELNAMDKALFTEIVYGTVKRKYTLDFYL-------KPFVKTKIKAWVRQLLWMSIYQYVY 113
Query: 164 LD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVL--LKDNNSLPLPKLEGNDRAQA 220
LD +P +A+++E V +AK GN+VNGILR ++ L D N + PK
Sbjct: 114 LDKVPNHAIINEAVEIAKERGGYHNGNVVNGILRTMMRSDLPDFNEIADPK--------- 164
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADL-----V 275
+ +A YS P W++ W + G EE ++ S ++RAN +TRA L
Sbjct: 165 KRMAIEYSMPKWIIDHWATHYGLEETETILQSFLETTSTTVRAN----LTRASLDDIIEK 220
Query: 276 MQLNLLKLQVPHEL--SLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDP 333
+Q ++ H+L LH+ G Q +I + K+G ++QD+S+ V +++
Sbjct: 221 LQDEGYDVEKDHDLPYCLHI--------GGQPIIHSRSFKDGFVSIQDKSSMFVAHIMNV 272
Query: 334 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILN-ETAKLHQVNSVIRTI 392
++D C+APGGK ++A L +G V A DI+ ++ ++N KL N I+
Sbjct: 273 DRHDHVLDACSAPGGKACHIAEVLMPEGQVDASDIHDHKIDLINFNIKKLRLTN--IKAF 330
Query: 393 HADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAAS 452
D D + DK+L+DAPCSGLGV+ + ++++ + + +E L LQ E+L+
Sbjct: 331 QHDATKPYDKTY---DKILVDAPCSGLGVMRHKPEIKYTQSKQHIESLVELQLEILENVK 387
Query: 453 LLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADG-----------LVPSDFV 501
VK GG ++YSTC+I+ ENE + FL + F +P ++P DF
Sbjct: 388 NNVKIGGEIIYSTCTIEQLENENVIYTFLKNNKNFEFEPFQHPITGELVKTLQIMPQDFN 447
Query: 502 TKHGFFFS 509
+ GFF +
Sbjct: 448 SD-GFFIT 454
>gi|223984315|ref|ZP_03634458.1| hypothetical protein HOLDEFILI_01752 [Holdemania filiformis DSM
12042]
gi|223963715|gb|EEF68084.1| hypothetical protein HOLDEFILI_01752 [Holdemania filiformis DSM
12042]
Length = 412
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 129/423 (30%), Positives = 215/423 (50%), Gaps = 37/423 (8%)
Query: 91 NEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLL 150
NE Y L + L + + R VT ++ G +R R L L + EP +
Sbjct: 17 NEGQYANLWLRQHGQTLSEEEKRWVTAVIYGVLRHREPLRWQWRDLVRNVP-----EPSV 71
Query: 151 LQILRIGFYEIVKLDM-PPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPL 209
+L + Y++ LD YA+V++ V L + + LVN +LR+L+ PL
Sbjct: 72 AVLLDMSVYQLFYLDKGAEYAIVNDAVELCPRSKK----GLVNAVLRQLL---RRGPKPL 124
Query: 210 PKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGV 269
PK E LA + SHP W+++ W + G+E+ ++ + + + + S+R N K +
Sbjct: 125 PKPES-----IADLALVTSHPQWLLQLWKAHYGEEKMRRIALADLEEAAVSVRINPLK-L 178
Query: 270 TRADLVMQLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVA 329
+R L Q P + +L + + G N + LKEG +QD S+ V
Sbjct: 179 SREALA--------QRP-DWALESNGWTIRTAG--NPVSDPWLKEGKIVIQDRSSQQVAL 227
Query: 330 VVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSV- 388
++DP+P ++ D C+APG KT +A+ ++ +G + A D++ RL ++ E A+ +
Sbjct: 228 MLDPKPNDTVFDACSAPGTKTTQLAAMMNNEGSILACDLHAHRLALVEEAAQRCGATIIQ 287
Query: 389 IRTIHADLRTFADNSTV--KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDE 446
RT+ A AD + D+VLLD PCSGLGVL + ++ + ++E+ LQ
Sbjct: 288 TRTLDA---AQADQQLAGRQFDRVLLDVPCSGLGVLRHKPEILLRLTPDSLDEIVALQAA 344
Query: 447 LLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGF 506
+L + L KPGG LVYSTC+++ +EN+++V AFLL+HPEF + + P D + GF
Sbjct: 345 ILSHCAPLCKPGGTLVYSTCTLNRKENDKQVAAFLLQHPEFELMAEQTIFP-DEGAQDGF 403
Query: 507 FFS 509
+ +
Sbjct: 404 YIA 406
>gi|421894377|ref|ZP_16324866.1| ribosomal RNA small subunit methyltransferase B [Pediococcus
pentosaceus IE-3]
gi|385272681|emb|CCG90238.1| ribosomal RNA small subunit methyltransferase B [Pediococcus
pentosaceus IE-3]
Length = 444
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 132/448 (29%), Positives = 229/448 (51%), Gaps = 38/448 (8%)
Query: 79 DLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCH 138
D+L K +GS N ++ ++ L D D L+T+IV G ++ R LD +
Sbjct: 14 DILEKIDEGSFSN----IQLNQDIKSSSLIDIDKNLLTEIVYGVLQHRLTLDFYLA---- 65
Query: 139 DEKTFSSMEP-LLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILR 196
D M P ++ +LR +++ LD +P +A+ +E++ +AK+ G +V G+LR
Sbjct: 66 DYIRKPEMTPRWVINLLRTAVFQMEFLDRVPDFAIFNESIEIAKLRGNDGIRKMVTGVLR 125
Query: 197 KLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSD 256
+ N P + R L+T YS W+V + LG+E+ I ++ N
Sbjct: 126 SY---QRNGK---PSFDSIKNPVER-LSTQYSVAPWIVDQMLYELGEEKCISILKSINQP 178
Query: 257 PSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGL 316
++R N R T AD++ L + + S + +R+ G ++ +G
Sbjct: 179 SHLAVRIN-RWNKTHADIIKDL---EYEYTVTTSAIAKDGLRLSRG-ASISDTRSYIDGD 233
Query: 317 CAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRIL 376
VQDESA LV + + GQ ++D CAAPGGKT +A+ + G V DI + R++++
Sbjct: 234 LTVQDESAMLVAETMHLEKGQKVLDACAAPGGKTTQIAAMIGETGEVTGWDIYQKRVQLI 293
Query: 377 NETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLED 436
+ A+ +++V +T D F ++ D++L+DAPCSG+G++ ++ ++R+ + +D
Sbjct: 294 QDNAQRMHLDNV-KTEVQDAIAFREDLDESFDRILVDAPCSGIGLMRRKPEIRYLKSKKD 352
Query: 437 MEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFS---IDPAD 493
+L LQ ++LD + ++K GGVL YSTC+I +EN+E +E FL HPEF ++ A
Sbjct: 353 SSDLHQLQLKILDNIAKMLKVGGVLTYSTCTILRKENQETIEKFLAIHPEFEQLKVETAK 412
Query: 494 -----------GLVPSDFVTKHGFFFSD 510
+ P DF + GFF ++
Sbjct: 413 KIKQNRDELSLNIYPDDFES-DGFFIAN 439
>gi|408423415|emb|CCJ10826.1| Similar to RNA-binding Sun protein [Staphylococcus aureus subsp.
aureus ST228]
gi|408425405|emb|CCJ12792.1| Similar to RNA-binding Sun protein [Staphylococcus aureus subsp.
aureus ST228]
gi|408427393|emb|CCJ14756.1| Similar to RNA-binding Sun protein [Staphylococcus aureus subsp.
aureus ST228]
gi|408429380|emb|CCJ26545.1| Similar to RNA-binding Sun protein [Staphylococcus aureus subsp.
aureus ST228]
gi|408431368|emb|CCJ18683.1| Similar to RNA-binding Sun protein [Staphylococcus aureus subsp.
aureus ST228]
gi|408433362|emb|CCJ20647.1| Similar to RNA-binding Sun protein [Staphylococcus aureus subsp.
aureus ST228]
gi|408435353|emb|CCJ22613.1| Similar to RNA-binding Sun protein [Staphylococcus aureus subsp.
aureus ST228]
gi|408437338|emb|CCJ24581.1| Similar to RNA-binding Sun protein [Staphylococcus aureus subsp.
aureus ST228]
Length = 431
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 129/428 (30%), Positives = 215/428 (50%), Gaps = 58/428 (13%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTF--SSMEPLLLQILRIGFYEIVK 163
+L+ D L T+IV GT++ + LD + K F + ++ + Q+L + Y+ V
Sbjct: 31 ELNAMDKALFTEIVYGTVKRKYTLDFYL-------KPFVKTKIKAWVRQLLWMSIYQYVY 83
Query: 164 LD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVL--LKDNNSLPLPKLEGNDRAQA 220
LD +P +A+++E V +AK GN+VNGILR ++ L D N + PK
Sbjct: 84 LDKVPNHAIINEAVEIAKERGGYHNGNVVNGILRTMMRSDLPDFNEIADPK--------- 134
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADL-----V 275
+ +A YS P W++ W + G EE ++ S ++RAN +TRA L
Sbjct: 135 KRMAIEYSMPKWIIDHWATHYGLEETETILQSFLETTSTTVRAN----LTRASLDDIIEK 190
Query: 276 MQLNLLKLQVPHEL--SLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDP 333
+Q ++ H+L LH+ G Q +I + K+G ++QD+S+ V +++
Sbjct: 191 LQDEGYDVEKDHDLPYCLHI--------GGQPIIHSRSFKDGFVSIQDKSSMFVAHIMNV 242
Query: 334 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILN-ETAKLHQVNSVIRTI 392
++D C+APGGK ++A L +G V A DI+ ++ ++N KL N I+
Sbjct: 243 DRHDHVLDACSAPGGKACHIAEVLMPEGQVDASDIHDHKIDLINFNIKKLRLTN--IKAF 300
Query: 393 HADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAAS 452
D D + DK+L+DAPCSGLGV+ + ++++ + + +E L LQ E+L+
Sbjct: 301 QHDATKPYDKT---YDKILVDAPCSGLGVMRHKPEIKYTQSKQHIESLVELQLEILENVK 357
Query: 453 LLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADG-----------LVPSDFV 501
VK GG ++YSTC+I+ ENE + FL + F +P ++P DF
Sbjct: 358 NNVKIGGEIIYSTCTIEQLENENVIYTFLKNNKNFEFEPFQHPITGELVKTLQIMPQDFN 417
Query: 502 TKHGFFFS 509
+ GFF +
Sbjct: 418 SD-GFFIT 424
>gi|384549972|ref|YP_005739224.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus JKD6159]
gi|386830752|ref|YP_006237406.1| hypothetical protein SAEMRSA15_10500 [Staphylococcus aureus subsp.
aureus HO 5096 0412]
gi|302332821|gb|ADL23014.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus JKD6159]
gi|385196144|emb|CCG15765.1| hypothetical protein SAEMRSA15_10500 [Staphylococcus aureus subsp.
aureus HO 5096 0412]
Length = 435
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 129/428 (30%), Positives = 214/428 (50%), Gaps = 58/428 (13%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTF--SSMEPLLLQILRIGFYEIVK 163
+L+ D L T+IV GT++ + LD + K F + ++ + Q+L + Y+ V
Sbjct: 35 ELNAMDKALFTEIVYGTVKRKYTLDFYL-------KPFVKTKIKAWVRQLLWMSIYQYVY 87
Query: 164 LD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVL--LKDNNSLPLPKLEGNDRAQA 220
LD +P +A+++E V +AK GN+VNGILR ++ L D N + PK
Sbjct: 88 LDKVPNHAIINEAVEIAKERGGYHNGNVVNGILRTMMRSDLPDFNEIADPK--------- 138
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADL-----V 275
+ +A YS P W++ W + G EE ++ S ++RAN +TRA L
Sbjct: 139 KRMAIEYSMPKWIIDHWATHYGLEETETILQSFLETTSTTVRAN----LTRASLDDIIEK 194
Query: 276 MQLNLLKLQVPHEL--SLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDP 333
+Q ++ H+L LH+ G Q +I + K+G ++QD+S+ V +++
Sbjct: 195 LQDEGYDVEKDHDLPYCLHI--------GGQPIIHSRSFKDGFVSIQDKSSMFVAHIMNV 246
Query: 334 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILN-ETAKLHQVNSVIRTI 392
++D C+APGGK ++A L +G V A DI+ ++ ++N KL N I+
Sbjct: 247 DRHDHVLDACSAPGGKACHIAEVLMPEGQVDASDIHDHKIDLINFNIKKLRLTN--IKAF 304
Query: 393 HADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAAS 452
D D + DK+L+DAPCSGLGV+ + ++++ + + +E L LQ E+L+
Sbjct: 305 QHDATKPYDKT---YDKILVDAPCSGLGVMRHKPEIKYTQSKQHIESLVDLQLEILENVK 361
Query: 453 LLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADG-----------LVPSDFV 501
VK GG ++YSTC+I+ ENE + FL + F +P ++P DF
Sbjct: 362 NNVKIGGEIIYSTCTIEQLENENVIYTFLKNNKNFEFEPFQHPITGELVKTLQIMPQDF- 420
Query: 502 TKHGFFFS 509
GFF +
Sbjct: 421 NSDGFFIT 428
>gi|304381220|ref|ZP_07363873.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus ATCC BAA-39]
gi|304340203|gb|EFM06144.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus ATCC BAA-39]
Length = 435
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 129/428 (30%), Positives = 214/428 (50%), Gaps = 58/428 (13%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTF--SSMEPLLLQILRIGFYEIVK 163
+L+ D L T+IV GT++ + LD + K F + ++ + Q+L + Y+ V
Sbjct: 35 ELNAMDKALFTEIVYGTVKRKYTLDFYL-------KPFVKTKIKAWVRQLLWMSIYQYVY 87
Query: 164 LD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVL--LKDNNSLPLPKLEGNDRAQA 220
LD +P +A+++E V +AK GN+VNGILR ++ L D N + PK
Sbjct: 88 LDKVPNHAIINEAVEIAKERGGYHNGNVVNGILRTMMRSDLPDFNEIADPK--------- 138
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADL-----V 275
+ +A YS P W++ W + G EE ++ S ++RAN +TRA L
Sbjct: 139 KRMAIEYSMPKWIIDHWATHYGLEETETILQSFLETTSTTVRAN----LTRASLDDIIEK 194
Query: 276 MQLNLLKLQVPHEL--SLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDP 333
+Q ++ H+L LH+ G Q +I + K+G ++QD+S+ V +++
Sbjct: 195 LQDEGYDVEKXHDLPYCLHI--------GGQPIIHSRSFKDGFVSIQDKSSMFVAHIMNV 246
Query: 334 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILN-ETAKLHQVNSVIRTI 392
++D C+APGGK ++A L +G V A DI+ ++ ++N KL N I+
Sbjct: 247 DRHDHVLDACSAPGGKACHIAEVLMPEGQVDASDIHDHKIDLINFNIKKLRLTN--IKAF 304
Query: 393 HADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAAS 452
D D + DK+L+DAPCSGLGV+ + ++++ + + +E L LQ E+L+
Sbjct: 305 QHDATKPYDKT---YDKILVDAPCSGLGVMRHKPEIKYTQSKQHIESLVELQLEILENVK 361
Query: 453 LLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADG-----------LVPSDFV 501
VK GG ++YSTC+I+ ENE + FL + F +P ++P DF
Sbjct: 362 NNVKIGGEIIYSTCTIEQLENENVIYTFLKNNKNFEFEPFQHPITGELVKTLQIMPQDF- 420
Query: 502 TKHGFFFS 509
GFF +
Sbjct: 421 NSDGFFIT 428
>gi|390630530|ref|ZP_10258511.1| RNA methyltransferase [Weissella confusa LBAE C39-2]
gi|390484266|emb|CCF30859.1| RNA methyltransferase [Weissella confusa LBAE C39-2]
Length = 458
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 131/440 (29%), Positives = 217/440 (49%), Gaps = 47/440 (10%)
Query: 103 RTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIV 162
+ +LD+RD+ L+T +V G I+ R L++ + K ++P + ++L + +++
Sbjct: 43 KQAELDERDVHLMTTMVYGVIQRRMTLEYWLKPFV---KKPEKLDPWVRELLYVSLFQMK 99
Query: 163 KLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQAR 221
LD +P +A+ DE + +AK G V G+L + DR R
Sbjct: 100 FLDKVPNHAIFDEAINIAKRRGHDGVRKFVTGVLHAI-----------------DREGVR 142
Query: 222 ALATIY----------SHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTR 271
+ I S P W++ + T+ LG E+A ++ + N P+ S R N T
Sbjct: 143 SFDEITDKVERLSVEASLPTWLINQLTEELGWEKASRIAMAINDAPAQSARVN-LAVTTV 201
Query: 272 ADLVMQLNLLKLQV-PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAV 330
AD L V P +++ + + + G +V + K+GL +QDESA L+
Sbjct: 202 ADATKILEEEGFTVTPSKVT---PDALLLAGG--HVASSQAFKDGLVTLQDESAMLMAPS 256
Query: 331 VDPQPGQSIVDCCAAPGGKTLYMASCLSGQ--GLVYAIDINKGRLRILNETAKLHQVNSV 388
+D QP ++D AAPGGKT +A+ L+ G V A+DI+ ++ ++N+ A+ V
Sbjct: 257 LDIQPDDQVLDAAAAPGGKTTQIATYLNAAEGGHVEALDIHDHKVGLINQNAERLHVADR 316
Query: 389 IRTIHADLR----TFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQ 444
I D R FAD + D++L+DAPCSG G+L ++ ++R+++ +ED L+ +Q
Sbjct: 317 INARTLDARKVDEAFADG---QFDRILVDAPCSGFGLLRRKPEIRYDKSIEDSLSLQKIQ 373
Query: 445 DELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKH 504
+L+AA+ +K GG +VY TC+I ENE+ V+ FL HP+F + P D
Sbjct: 374 LGILEAAAPKLKAGGRMVYGTCTILRSENEDVVDMFLADHPDFELVPTYTAYDLDARDDR 433
Query: 505 GFFFSDPIKHSLDGAFAARL 524
G P DG F A L
Sbjct: 434 GMVHMFPDDFESDGFFIATL 453
>gi|417916450|ref|ZP_12560029.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
mitis bv. 2 str. SK95]
gi|342829657|gb|EGU64006.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
mitis bv. 2 str. SK95]
Length = 437
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 129/393 (32%), Positives = 205/393 (52%), Gaps = 53/393 (13%)
Query: 111 DLRLVTDIVGGTI------RWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
D LVT+IV GT+ W YL H I + ++ L +L + Y++ L
Sbjct: 42 DKGLVTEIVYGTVARKLTLEW--YLSHFI-------EDRDKLDNWLYILLLLSAYQLRYL 92
Query: 165 D-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARAL 223
D +P +AVV+E V +AKV + G+ LVN +LR++ L++ P ++ R R
Sbjct: 93 DKVPNHAVVNEAVEIAKVR-KKGSEKLVNAVLRRI--LREG----WPDIDSIKRKNKRD- 144
Query: 224 ATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKL 283
+ YS PVW+V + + G+E A + SL ++ + DL + + L
Sbjct: 145 SIAYSLPVWLVSKLKEEYGEERAQAIFE--------SLLVRNKASIRVTDLSRKEEIKAL 196
Query: 284 QVPHELSLHLDEFIRVKTGLQNVIQAG------LLKEGLCAVQDESAGLVVAVVDPQPGQ 337
L + + TGL V + G L EG +QDES+ LV + Q +
Sbjct: 197 -------LEATDSLLATTGL--VKEQGHFAGHDLFAEGAITIQDESSQLVAPTLRLQGDE 247
Query: 338 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR 397
++D CAAPGGKT++MAS L+ G V A+D+ +L ++ E A+ V ++T D R
Sbjct: 248 QVLDACAAPGGKTVHMASYLTS-GKVTALDLYDHKLDLIQENAQRLGVADRVQTQKLDAR 306
Query: 398 T---FADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLL 454
F D + DK+L+DAPCSG+G+L ++ D+++N+ + D L+ +Q E+L +
Sbjct: 307 KVHEFFDRDSF--DKILVDAPCSGIGLLRRKPDIKYNKEMADFASLQQIQLEILGSVCQT 364
Query: 455 VKPGGVLVYSTCSIDPEENEERVEAFLLRHPEF 487
++ GG++ YSTC+I EEN + V+AFL HPEF
Sbjct: 365 LRKGGIITYSTCTIVSEENFQVVQAFLESHPEF 397
>gi|449925421|ref|ZP_21800256.1| putative RNA-binding Sun protein [Streptococcus mutans 4SM1]
gi|450033804|ref|ZP_21833955.1| putative RNA-binding Sun protein [Streptococcus mutans M21]
gi|450109895|ref|ZP_21861755.1| putative RNA-binding Sun protein [Streptococcus mutans SM6]
gi|449161515|gb|EMB64700.1| putative RNA-binding Sun protein [Streptococcus mutans 4SM1]
gi|449196879|gb|EMB98110.1| putative RNA-binding Sun protein [Streptococcus mutans M21]
gi|449225650|gb|EMC25236.1| putative RNA-binding Sun protein [Streptococcus mutans SM6]
Length = 437
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 126/420 (30%), Positives = 219/420 (52%), Gaps = 44/420 (10%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L D L+T++V GT+ + L+ L H + + +E + +L + Y+I+ LD
Sbjct: 39 LSQADRSLLTELVYGTLTRKITLE---WYLAHHIEDRNKLETWIYYLLMLSLYQILYLDK 95
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P +A+V+E V LAK R GA LVN +LR+ + K P + R R T
Sbjct: 96 IPQHAIVNEAVDLAKSRNR-GAEKLVNAVLRQFLRQKR------PDITVIKRKNKRYSIT 148
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
YS PVW+V++ G++ AI ++ S +R+ + V D Q+ ++
Sbjct: 149 -YSVPVWLVKKMIGQFGEDRAISIL------KSLLVRSKASIRVVNPD---QIEVIAKAT 198
Query: 286 PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAA 345
+ S+ L VK Q + L K+G +QDES+ LV + + ++++D C+A
Sbjct: 199 GAKKSV-LSPCGLVKASGQ-FFDSDLFKQGKITIQDESSQLVAPTLAIKGNETVLDACSA 256
Query: 346 PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT----FAD 401
PGGK +++AS L+ G + A+D+ +L+++ + A + + I+ D R FA
Sbjct: 257 PGGKAVHIASYLTT-GQIIALDLYDHKLKLIKDNADRLKAANYIKPQKLDARKVHKYFAK 315
Query: 402 NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVL 461
++ DK+L+DAPCSG+G++ ++ D+++N+ +D L+ +Q E+LD+ +K GG++
Sbjct: 316 DT---FDKILVDAPCSGIGLIRRKPDIKYNKDSKDFTSLQKIQLEILDSVCQTIKKGGII 372
Query: 462 VYSTCSIDPEENEERVEAFLLRHPEFS------------IDPADGLVPSDFVTKHGFFFS 509
YSTC+I EEN+ ++ FL +HP F +D + P ++T GFF S
Sbjct: 373 TYSTCTIFAEENQMVLKQFLEQHPNFEQVKLNHKKKDIVVDGCLLITPEQYLT-DGFFIS 431
>gi|450087007|ref|ZP_21854001.1| putative RNA-binding Sun protein [Streptococcus mutans NV1996]
gi|449218728|gb|EMC18729.1| putative RNA-binding Sun protein [Streptococcus mutans NV1996]
Length = 440
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 125/420 (29%), Positives = 218/420 (51%), Gaps = 44/420 (10%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L D L+T++V GT+ + L+ + D + +E + +L + Y+I+ LD
Sbjct: 42 LSQADRSLLTELVYGTLTRKITLEWYLAHYIEDR---NKLETWIYYLLMLSLYQILYLDK 98
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P +A+V+E V LAK R GA LVN +LR+ + K P + R R T
Sbjct: 99 IPQHAIVNEAVDLAKSRNR-GAEKLVNAVLRQFLRQKR------PDITVIKRKNKRYSIT 151
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
YS PVW+V++ G++ AI ++ S +R+ + V D Q+ ++
Sbjct: 152 -YSVPVWLVKKMIDQFGEDRAISIL------KSLLVRSKASIRVVNPD---QIEVIAKAT 201
Query: 286 PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAA 345
+ S+ L VK Q + L K+G +QDES+ LV + + ++++D C+A
Sbjct: 202 GAKKSV-LSPCGLVKASGQ-FFDSDLFKQGKITIQDESSQLVAPTLAIKGNETVLDACSA 259
Query: 346 PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT----FAD 401
PGGK +++AS L+ G + A+D+ +L+++ + A + + I+ D R FA
Sbjct: 260 PGGKAVHIASYLTT-GQIIALDLYDHKLKLIKDNADRLKAANYIKPQKLDARKVHKYFAK 318
Query: 402 NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVL 461
++ DK+L+DAPCSG+G++ ++ D+++N+ +D L+ +Q E+LD+ +K GG++
Sbjct: 319 DT---FDKILVDAPCSGIGLIRRKPDIKYNKDSKDFTSLQKIQLEILDSVCQTIKKGGII 375
Query: 462 VYSTCSIDPEENEERVEAFLLRHPEFS------------IDPADGLVPSDFVTKHGFFFS 509
YSTC+I EEN+ ++ FL +HP F +D + P ++T GFF S
Sbjct: 376 TYSTCTIFAEENQMVLKQFLEQHPNFEQVKLNHKKKDIVVDGCLLITPEQYLT-DGFFIS 434
>gi|449875904|ref|ZP_21782464.1| putative RNA-binding Sun protein [Streptococcus mutans S1B]
gi|449903930|ref|ZP_21792423.1| putative RNA-binding Sun protein [Streptococcus mutans M230]
gi|449973997|ref|ZP_21815046.1| putative RNA-binding Sun protein [Streptococcus mutans 11VS1]
gi|449178812|gb|EMB81051.1| putative RNA-binding Sun protein [Streptococcus mutans 11VS1]
gi|449253292|gb|EMC51250.1| putative RNA-binding Sun protein [Streptococcus mutans S1B]
gi|449260224|gb|EMC57729.1| putative RNA-binding Sun protein [Streptococcus mutans M230]
Length = 437
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 125/420 (29%), Positives = 218/420 (51%), Gaps = 44/420 (10%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L D L+T++V GT+ + L+ + D + +E + +L + Y+I+ LD
Sbjct: 39 LSQADRSLLTELVYGTLTRKITLEWYLAHYIEDR---NKLETWIYYLLMLSLYQILYLDK 95
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P +A+V+E V LAK R GA LVN +LR+ + K P + R R T
Sbjct: 96 IPQHAIVNEAVDLAKSRNR-GAEKLVNAVLRQFLRQKR------PDITVIKRKNKRYSIT 148
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
YS PVW+V++ G++ AI ++ S +R+ + V D Q+ ++
Sbjct: 149 -YSVPVWLVKKMISQFGEDRAISIL------KSLLVRSKASIRVVNPD---QIEVIAKAT 198
Query: 286 PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAA 345
+ S+ L VK Q + L K+G +QDES+ LV + + ++++D C+A
Sbjct: 199 GAKKSV-LSPCGLVKASGQ-FFDSDLFKQGKITIQDESSQLVAPTLAIKGNEAVLDACSA 256
Query: 346 PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT----FAD 401
PGGK +++AS L+ G + A+D+ +L+++ + A + + I+ D R FA
Sbjct: 257 PGGKAVHIASYLTT-GQIIALDLYDHKLKLIKDNADRLKAANYIKPQKLDARKVHKYFAK 315
Query: 402 NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVL 461
++ DK+L+DAPCSG+G++ ++ D+++N+ +D L+ +Q E+LD+ +K GG++
Sbjct: 316 DT---FDKILVDAPCSGIGLIRRKPDIKYNKDSKDFTSLQKIQLEILDSVCQTIKKGGII 372
Query: 462 VYSTCSIDPEENEERVEAFLLRHPEFS------------IDPADGLVPSDFVTKHGFFFS 509
YSTC+I EEN+ ++ FL +HP F +D + P ++T GFF S
Sbjct: 373 TYSTCTIFAEENQMVLKQFLEQHPNFEQVKLNHKKKDIVVDGCLLITPEQYLT-DGFFIS 431
>gi|24378967|ref|NP_720922.1| 16S rRNA methyltransferase GidB [Streptococcus mutans UA159]
gi|449871990|ref|ZP_21781313.1| putative RNA-binding Sun protein [Streptococcus mutans 8ID3]
gi|449955275|ref|ZP_21809278.1| putative RNA-binding Sun protein [Streptococcus mutans 4VF1]
gi|449986159|ref|ZP_21820040.1| putative RNA-binding Sun protein [Streptococcus mutans NFSM2]
gi|449999996|ref|ZP_21824841.1| putative RNA-binding Sun protein [Streptococcus mutans N29]
gi|450005089|ref|ZP_21826473.1| putative RNA-binding Sun protein [Streptococcus mutans NMT4863]
gi|450107111|ref|ZP_21860851.1| putative RNA-binding Sun protein [Streptococcus mutans SF14]
gi|450126183|ref|ZP_21868028.1| putative RNA-binding Sun protein [Streptococcus mutans U2A]
gi|450131525|ref|ZP_21869539.1| putative RNA-binding Sun protein [Streptococcus mutans NLML8]
gi|450139040|ref|ZP_21872376.1| putative RNA-binding Sun protein [Streptococcus mutans NLML1]
gi|450143333|ref|ZP_21873372.1| putative RNA-binding Sun protein [Streptococcus mutans 1ID3]
gi|450175312|ref|ZP_21885103.1| putative RNA-binding Sun protein [Streptococcus mutans SM1]
gi|24376856|gb|AAN58228.1|AE014894_5 putative RNA-binding Sun protein; possible rRNA methylase
[Streptococcus mutans UA159]
gi|449152292|gb|EMB56002.1| putative RNA-binding Sun protein [Streptococcus mutans 1ID3]
gi|449153800|gb|EMB57440.1| putative RNA-binding Sun protein [Streptococcus mutans NLML8]
gi|449154824|gb|EMB58376.1| putative RNA-binding Sun protein [Streptococcus mutans 8ID3]
gi|449170985|gb|EMB73668.1| putative RNA-binding Sun protein [Streptococcus mutans 4VF1]
gi|449178302|gb|EMB80570.1| putative RNA-binding Sun protein [Streptococcus mutans NFSM2]
gi|449186240|gb|EMB88079.1| putative RNA-binding Sun protein [Streptococcus mutans N29]
gi|449188953|gb|EMB90637.1| putative RNA-binding Sun protein [Streptococcus mutans NMT4863]
gi|449222279|gb|EMC22008.1| putative RNA-binding Sun protein [Streptococcus mutans SF14]
gi|449231718|gb|EMC30883.1| putative RNA-binding Sun protein [Streptococcus mutans U2A]
gi|449233485|gb|EMC32556.1| putative RNA-binding Sun protein [Streptococcus mutans NLML1]
gi|449247174|gb|EMC45462.1| putative RNA-binding Sun protein [Streptococcus mutans SM1]
Length = 437
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 125/420 (29%), Positives = 218/420 (51%), Gaps = 44/420 (10%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L D L+T++V GT+ + L+ + D + +E + +L + Y+I+ LD
Sbjct: 39 LSQADRSLLTELVYGTLTRKITLEWYLAHYIEDR---NKLETWIYYLLMLSLYQILYLDK 95
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P +A+V+E V LAK R GA LVN +LR+ + K P + R R T
Sbjct: 96 IPQHAIVNEAVDLAKSRNR-GAEKLVNAVLRQFLRQKR------PDITVIKRKNKRYSIT 148
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
YS PVW+V++ G++ AI ++ S +R+ + V D Q+ ++
Sbjct: 149 -YSVPVWLVKKMIDQFGEDRAISIL------KSLLVRSKASIRVVNPD---QIEVIAKAT 198
Query: 286 PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAA 345
+ S+ L VK Q + L K+G +QDES+ LV + + ++++D C+A
Sbjct: 199 GAKKSV-LSPCGLVKASGQ-FFDSDLFKQGKITIQDESSQLVAPTLAIKGNETVLDACSA 256
Query: 346 PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT----FAD 401
PGGK +++AS L+ G + A+D+ +L+++ + A + + I+ D R FA
Sbjct: 257 PGGKAVHIASYLTT-GQIIALDLYDHKLKLIKDNADRLKAANYIKPQKLDARKVHKYFAK 315
Query: 402 NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVL 461
++ DK+L+DAPCSG+G++ ++ D+++N+ +D L+ +Q E+LD+ +K GG++
Sbjct: 316 DT---FDKILVDAPCSGIGLIRRKPDIKYNKDSKDFTSLQKIQLEILDSVCQTIKKGGII 372
Query: 462 VYSTCSIDPEENEERVEAFLLRHPEFS------------IDPADGLVPSDFVTKHGFFFS 509
YSTC+I EEN+ ++ FL +HP F +D + P ++T GFF S
Sbjct: 373 TYSTCTIFAEENQMVLKQFLEQHPNFEQVKLNHKKKDIVVDGCLLITPEQYLT-DGFFIS 431
>gi|157372746|ref|YP_001480735.1| 16S rRNA methyltransferase B [Serratia proteamaculans 568]
gi|224493268|sp|A8GKG7.1|RSMB_SERP5 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|157324510|gb|ABV43607.1| sun protein [Serratia proteamaculans 568]
Length = 429
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 133/417 (31%), Positives = 209/417 (50%), Gaps = 30/417 (7%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
K + D+D L+ ++ GT+R L+ I L K + + L +L +G Y+++
Sbjct: 34 KTISDKDRALLQELCFGTLRVLPQLEWCIQQLM--AKPMTGKQRTLHYLLMVGLYQLLYT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P +AV+ E V A RP L+NG+LR+ + L + ND
Sbjct: 92 RIPAHAVLAETVEGAVALKRPQLKGLINGVLRQF---QRQQEELLQRAANND-------- 140
Query: 225 TIYSHPVWMVRRWTK-YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKL 283
+ Y HP W+++R + Y Q E I + NN P LR N R TR D + + +
Sbjct: 141 SRYLHPSWLLKRIQQAYPAQWEQI--IDANNQKPPMWLRVN-RLHHTREDYLQLME--QA 195
Query: 284 QVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCC 343
+ E + +R+ G +G VQD SA V ++DPQ G+ I+D C
Sbjct: 196 GIAAEPHAEYRDAVRLLAPCAVTDLPGF-ADGWVTVQDASAQGCVDLLDPQDGEQILDLC 254
Query: 344 AAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS 403
AAPGGKT ++ + + V A+DI++ RL+ + E + ++++ ++ D RT
Sbjct: 255 AAPGGKTTHILEA-APKAHVMAVDIDEQRLKRVKENLQRLRLHAEVK--QGDGRTPQQWC 311
Query: 404 TVK-CDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLV 462
K D++LLDAPCS GV+ + D++W RR D+ EL LQ E+++A +K GGV+V
Sbjct: 312 GDKQFDRILLDAPCSATGVIRRHPDIKWLRRDSDIAELAALQAEIIEAIWPHLKSGGVMV 371
Query: 463 YSTCSIDPEENEERVEAFLLRHPEFS-IDPADGLVPSDFVTKH-----GFFFSDPIK 513
Y+TCSI P EN E+V AFL RH + ++ + P H GFF++ IK
Sbjct: 372 YATCSILPAENAEQVSAFLQRHADARLVETGNQQQPGRQNLPHPEDGDGFFYAKLIK 428
>gi|449908575|ref|ZP_21793799.1| putative RNA-binding Sun protein [Streptococcus mutans OMZ175]
gi|449262712|gb|EMC60155.1| putative RNA-binding Sun protein [Streptococcus mutans OMZ175]
Length = 437
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 125/420 (29%), Positives = 218/420 (51%), Gaps = 44/420 (10%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L D L+T++V GT+ + L+ + D + +E + +L + Y+I+ LD
Sbjct: 39 LSQADRSLLTELVYGTLTRKITLEWYLAHYIEDR---NKLETWIYYLLMLSLYQILYLDK 95
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P +A+V+E V LAK R GA LVN +LR+ + K P + R R T
Sbjct: 96 IPQHAIVNEAVDLAKSRNR-GAEKLVNAVLRQFLRQKR------PDITVIKRKNKRYSIT 148
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
YS PVW+V++ G++ AI ++ S +R+ + V D Q+ ++
Sbjct: 149 -YSVPVWLVKKMIDQFGEDRAISIL------KSLLVRSKASIRVVNPD---QIEVIAKAT 198
Query: 286 PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAA 345
+ S+ L VK Q + L K+G +QDES+ LV + + ++++D C+A
Sbjct: 199 GAKKSV-LSPCGLVKASGQ-FFDSDLFKQGKITIQDESSQLVAPTLAIKGNETVLDACSA 256
Query: 346 PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT----FAD 401
PGGK +++AS L+ G + A+D+ +L+++ + A + + I+ D R FA
Sbjct: 257 PGGKAVHIASYLTT-GQIIALDLYDHKLKLIKDNADRLKAANYIKPQKLDARKVHKYFAK 315
Query: 402 NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVL 461
++ DK+L+DAPCSG+G++ ++ D+++N+ +D L+ +Q E+LD+ +K GG++
Sbjct: 316 DT---FDKILVDAPCSGIGLIRRKPDIKYNKDSKDFTSLQKIQLEILDSVCQTIKKGGII 372
Query: 462 VYSTCSIDPEENEERVEAFLLRHPEFS------------IDPADGLVPSDFVTKHGFFFS 509
YSTC+I EEN+ ++ FL +HP F +D + P ++T GFF S
Sbjct: 373 TYSTCTIFAEENQMVLKQFLEQHPNFEQVKLNHKKKDIVVDGCLLITPEQYLT-DGFFIS 431
>gi|450083393|ref|ZP_21852882.1| putative RNA-binding Sun protein [Streptococcus mutans N66]
gi|449213390|gb|EMC13727.1| putative RNA-binding Sun protein [Streptococcus mutans N66]
Length = 437
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 125/420 (29%), Positives = 218/420 (51%), Gaps = 44/420 (10%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L D L+T++V GT+ + L+ + D + +E + +L + Y+I+ LD
Sbjct: 39 LSQADRSLLTELVYGTLTRKITLEWYLAHYIEDR---NKLETWIYYLLMLSLYQILYLDK 95
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P +A+V+E V LAK R GA LVN +LR+ + K P + R R T
Sbjct: 96 IPQHAIVNEAVALAKSRNR-GAEKLVNAVLRQFLRQKR------PDITVIKRKNKRYSIT 148
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
YS PVW+V++ G++ AI ++ S +R+ + V D Q+ ++
Sbjct: 149 -YSVPVWLVKKMIDQFGEDRAISIL------KSLLVRSKASIRVVNPD---QIEVIAKAT 198
Query: 286 PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAA 345
+ S+ L VK Q + L K+G +QDES+ LV + + ++++D C+A
Sbjct: 199 GAKKSV-LSPCGLVKASGQ-FFDSDLFKQGKITIQDESSQLVAPTLAIKGNETVLDACSA 256
Query: 346 PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT----FAD 401
PGGK +++AS L+ G + A+D+ +L+++ + A + + I+ D R FA
Sbjct: 257 PGGKAVHIASYLTT-GQIIALDLYDHKLKLIKDNADRLKAANYIKPQKLDARKVHKYFAK 315
Query: 402 NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVL 461
++ DK+L+DAPCSG+G++ ++ D+++N+ +D L+ +Q E+LD+ +K GG++
Sbjct: 316 DT---FDKILVDAPCSGIGLIRRKPDIKYNKDSKDFTSLQKIQLEILDSVCQTIKKGGII 372
Query: 462 VYSTCSIDPEENEERVEAFLLRHPEFS------------IDPADGLVPSDFVTKHGFFFS 509
YSTC+I EEN+ ++ FL +HP F +D + P ++T GFF S
Sbjct: 373 TYSTCTIFAEENQMVLKQFLEQHPNFEQVKLNHKKKDIVVDGCLLITPEQYLT-DGFFIS 431
>gi|450158848|ref|ZP_21879074.1| putative RNA-binding Sun protein [Streptococcus mutans 66-2A]
gi|449241868|gb|EMC40482.1| putative RNA-binding Sun protein [Streptococcus mutans 66-2A]
Length = 437
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 125/420 (29%), Positives = 218/420 (51%), Gaps = 44/420 (10%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L D L+T++V GT+ + L+ + D + +E + +L + Y+I+ LD
Sbjct: 39 LSQADSSLLTELVYGTLTRKITLEWYLAHYIEDR---NKLETWIYYLLMLSLYQILYLDK 95
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P +A+V+E V LAK R GA LVN +LR+ + K P + R R T
Sbjct: 96 IPQHAIVNEAVDLAKSRNR-GAEKLVNAVLRQFLRQKR------PDITVIKRKNKRYSIT 148
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
YS PVW+V++ G++ AI ++ S +R+ + V D Q+ ++
Sbjct: 149 -YSVPVWLVKKMIDQFGEDRAISIL------KSLLVRSKASIRVVNPD---QIEVIAKAT 198
Query: 286 PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAA 345
+ S+ L VK Q + L K+G +QDES+ LV + + ++++D C+A
Sbjct: 199 GAKKSV-LSPCGLVKASGQ-FFDSDLFKQGKITIQDESSQLVAPTLAIKGNETVLDACSA 256
Query: 346 PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT----FAD 401
PGGK +++AS L+ G + A+D+ +L+++ + A + + I+ D R FA
Sbjct: 257 PGGKAVHIASYLTT-GQIIALDLYDHKLKLIKDNADRLKAANYIKPQKLDARKVHKYFAK 315
Query: 402 NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVL 461
++ DK+L+DAPCSG+G++ ++ D+++N+ +D L+ +Q E+LD+ +K GG++
Sbjct: 316 DT---FDKILVDAPCSGIGLIRRKPDIKYNKDSKDFTSLQKIQLEILDSVCQTIKKGGII 372
Query: 462 VYSTCSIDPEENEERVEAFLLRHPEFS------------IDPADGLVPSDFVTKHGFFFS 509
YSTC+I EEN+ ++ FL +HP F +D + P ++T GFF S
Sbjct: 373 TYSTCTIFAEENQMVLKQFLEQHPNFEQVKLNHKKKDIVVDGCLLITPEQYLT-DGFFIS 431
>gi|295407155|ref|ZP_06816956.1| LOW QUALITY PROTEIN: ribosomal RNA small subunit methyltransferase
B [Staphylococcus aureus A8819]
gi|294968008|gb|EFG44036.1| LOW QUALITY PROTEIN: ribosomal RNA small subunit methyltransferase
B [Staphylococcus aureus A8819]
Length = 428
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 129/428 (30%), Positives = 214/428 (50%), Gaps = 58/428 (13%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTF--SSMEPLLLQILRIGFYEIVK 163
+L+ D L T+IV GT++ + LD + K F + ++ + Q+L + Y+ V
Sbjct: 35 ELNAMDKALFTEIVYGTVKRKYTLDFYL-------KPFVKTKIKAWVRQLLWMSIYQYVY 87
Query: 164 LD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVL--LKDNNSLPLPKLEGNDRAQA 220
LD +P +A+++E V +AK GN+VNGILR ++ L D N + PK
Sbjct: 88 LDKVPNHAIINEAVEIAKERGGYHNGNVVNGILRTMMRSDLPDFNEIADPK--------- 138
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADL-----V 275
+ +A YS P W++ W + G EE ++ S ++RAN +TRA L
Sbjct: 139 KRMAIEYSMPKWIIDHWATHYGLEETETILQSFLETTSTTVRAN----LTRASLDDIIEK 194
Query: 276 MQLNLLKLQVPHEL--SLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDP 333
+Q ++ H+L LH+ G Q +I + K+G ++QD+S+ V +++
Sbjct: 195 LQDEGYDVEKDHDLPYCLHI--------GGQPIIHSRSFKDGFVSIQDKSSMFVAHIMNV 246
Query: 334 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILN-ETAKLHQVNSVIRTI 392
++D C+APGGK ++A L +G V A DI+ ++ ++N KL N I+
Sbjct: 247 DRHDHVLDACSAPGGKACHIAEVLMPEGQVDASDIHDHKIDLINFNIKKLRLTN--IKAF 304
Query: 393 HADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAAS 452
D D + DK+L+DAPCSGLGV+ + ++++ + + +E L LQ E+L+
Sbjct: 305 QHDATKPYDKT---YDKILVDAPCSGLGVMRHKPEIKYTQSKQHIESLVELQLEILENVK 361
Query: 453 LLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADG-----------LVPSDFV 501
VK GG ++YSTC+I+ ENE + FL + F +P ++P DF
Sbjct: 362 NNVKIGGEIIYSTCTIEQLENENVIYTFLKNNKNFEFEPFQHPITGELVKTLQIMPQDF- 420
Query: 502 TKHGFFFS 509
GFF +
Sbjct: 421 NSDGFFIT 428
>gi|418464035|ref|ZP_13034977.1| 16S rRNA methyltransferase B [Aggregatibacter actinomycetemcomitans
RhAA1]
gi|359757376|gb|EHK91530.1| 16S rRNA methyltransferase B [Aggregatibacter actinomycetemcomitans
RhAA1]
Length = 451
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 133/427 (31%), Positives = 216/427 (50%), Gaps = 37/427 (8%)
Query: 110 RDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPPY 169
+DL L+ +I G R L+ +I L +K + ++ +L +G Y+I+ +P Y
Sbjct: 49 QDLPLLQEICFGVCRVLPRLEQIIAQLV--DKPLRGKKRIVHCLLLVGLYQILYTRIPAY 106
Query: 170 AVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSH 229
A VDE V AK LVN +LR+ L++ S+ L K++ + + H
Sbjct: 107 AAVDEVVNTAKALQLQSFQGLVNAVLRRF--LREQESM-LAKVDKHWQT---------LH 154
Query: 230 PVWMVRRWTK-YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHE 288
P W+V + K Y E I+ NN P LR N++K + L Q+ +
Sbjct: 155 PDWLVNKLKKQYPNWREIIEA---NNQKPPMWLRVNTQKNSLETYRTL---LTAQQMDAQ 208
Query: 289 LSLHLDEF-IRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPG 347
+ H + T +Q++ L EG VQD A ++ PQ G+ I+D CAAPG
Sbjct: 209 IRSHPQALGLTQPTAVQHL---PLFAEGGVTVQDLHAQWAALLLQPQNGELILDACAAPG 265
Query: 348 GKTLYMASCLSGQGLVYAIDINKGRL-RILNETAKLHQVNSVIRTIHADLRTFADN---S 403
GKT ++ L+ Q V A+D+ + RL R+ A++ Q +V+ A+ + + S
Sbjct: 266 GKTTHILE-LAPQAEVIALDVEENRLQRVKENLARMQQQATVVCGDAANPQAWLTKLGKS 324
Query: 404 TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463
V+ D++LLDAPCS GV+ + D++W R+ D+E L LQ+++L A +KP GVL+Y
Sbjct: 325 AVRFDRILLDAPCSATGVIRRHPDIKWLRKEADIEPLVELQEQILQALWTYLKPNGVLLY 384
Query: 464 STCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKH----GFFFSDPIKHSLDGA 519
+TCS+ EEN ++E FL R P+ + + +P + + ++ GF F I DG
Sbjct: 385 ATCSVLAEENARQIERFLQRTPDAQLAALN--LPEEVLARNQSAVGFQFIPQIDGG-DGF 441
Query: 520 FAARLVR 526
+ A+LV+
Sbjct: 442 YYAKLVK 448
>gi|334125893|ref|ZP_08499877.1| RNA methyltransferase Sun [Enterobacter hormaechei ATCC 49162]
gi|333386293|gb|EGK57510.1| RNA methyltransferase Sun [Enterobacter hormaechei ATCC 49162]
Length = 428
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 128/423 (30%), Positives = 213/423 (50%), Gaps = 29/423 (6%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
+ + D+D L+ ++ G +R L+ LI L + S + + ++ +GFY+++
Sbjct: 33 QKVSDKDKALLQELCFGVLRTLSQLEWLINKLM--SRPMSGKQRTVHYLIMVGFYQLLHT 90
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+PP+A + E V A RP L+NG+LR+ +D L +++AR L
Sbjct: 91 RIPPHAALAETVEGAVAIKRPQLKGLINGVLRQFQRQQDE------LLAEFAQSEARFL- 143
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQ 284
HP W++ R K Q+ + NN P +R N A L + L +
Sbjct: 144 ----HPEWLLNRLKKAYPQQWK-DIADANNQRPPMWVRVNRNHHTRDAWLAL---LEEAG 195
Query: 285 VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 344
+ + +R+ + G +EG VQD SA + ++P+ G+ I+D CA
Sbjct: 196 MGGFTHAAYPDAVRLASAAPVHALPGF-EEGWVTVQDASAQGCMTWLEPKDGEQILDLCA 254
Query: 345 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-NS 403
APGGKT ++ ++ + V A+D+++ RL + + K + + ++ D RT AD
Sbjct: 255 APGGKTTHILE-VAPRANVMAVDVDEQRLSRVYDNLKRLGMKAQVK--QGDGRTPADWCG 311
Query: 404 TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463
+ D++LLDAPCS GV+ + D++W RR D++EL LQ E+LDA +KPGG LVY
Sbjct: 312 DTRFDRILLDAPCSATGVIRRHPDIKWLRRDRDIKELAQLQSEILDAIWPHLKPGGTLVY 371
Query: 464 STCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAAR 523
+TCS+ PEEN +++ AFL R P+ ++ D P +H + P DG F A+
Sbjct: 372 ATCSVLPEENSQQIAAFLKRTPDATLH--DTGTP-----EHPGLQNLPGAEEGDGFFYAK 424
Query: 524 LVR 526
L++
Sbjct: 425 LIK 427
>gi|387142826|ref|YP_005731219.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus TW20]
gi|269940709|emb|CBI49090.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus TW20]
Length = 435
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 129/428 (30%), Positives = 214/428 (50%), Gaps = 58/428 (13%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTF--SSMEPLLLQILRIGFYEIVK 163
+L+ D L T+IV GT++ + LD + K F + ++ + Q+L + Y+ V
Sbjct: 35 ELNAMDKALFTEIVYGTVKRKYTLDFYL-------KPFVKTKIKAWVRQLLWMSIYQYVY 87
Query: 164 LD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVL--LKDNNSLPLPKLEGNDRAQA 220
LD +P +A+++E V +AK GN+VNGILR ++ L D N + PK
Sbjct: 88 LDKVPNHAIINEAVEIAKERGGYHNGNVVNGILRTMMRSDLPDFNEIADPK--------- 138
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADL-----V 275
+ +A YS P W++ W + G EE ++ S ++RAN +TRA L
Sbjct: 139 KRMAIEYSMPKWIIDHWATHYGLEETETILQSFLETTSTTVRAN----LTRASLDDIIEK 194
Query: 276 MQLNLLKLQVPHEL--SLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDP 333
+Q ++ H+L LH+ G Q +I + K+G ++QD+S+ V +++
Sbjct: 195 LQDEGYDVEKDHDLPYCLHI--------GGQPIIHSRSFKDGFVSIQDKSSMFVAHIMNV 246
Query: 334 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILN-ETAKLHQVNSVIRTI 392
++D C+APGGK ++A L +G V A DI+ ++ ++N KL N I+
Sbjct: 247 DRHDHVLDACSAPGGKACHIAEVLMPEGQVDAPDIHDHKIDLINFNIKKLRLTN--IKAF 304
Query: 393 HADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAAS 452
D D + DK+L+DAPCSGLGV+ + ++++ + + +E L LQ E+L+
Sbjct: 305 QHDATKPYDKT---YDKILVDAPCSGLGVMRHKPEIKYTQSKQHIESLVELQLEILENVK 361
Query: 453 LLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADG-----------LVPSDFV 501
VK GG ++YSTC+I+ ENE + FL + F +P ++P DF
Sbjct: 362 NNVKIGGEIIYSTCTIEQLENENVIYTFLKNNKNFEFEPFQHPITGELVKTLQIMPQDF- 420
Query: 502 TKHGFFFS 509
GFF +
Sbjct: 421 NSDGFFIT 428
>gi|449942024|ref|ZP_21805802.1| putative RNA-binding Sun protein [Streptococcus mutans 11A1]
gi|449151380|gb|EMB55119.1| putative RNA-binding Sun protein [Streptococcus mutans 11A1]
Length = 437
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 125/420 (29%), Positives = 218/420 (51%), Gaps = 44/420 (10%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L D L+T++V GT+ + L+ + D + +E + +L + Y+I+ LD
Sbjct: 39 LSQADRSLLTELVYGTLTRKITLEWYLAHYIEDR---NKLETWIYYLLMLSLYQILYLDK 95
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P +A+V+E V LAK R GA LVN +LR+ + K P + R R T
Sbjct: 96 IPQHAIVNEAVDLAKSRNR-GAEKLVNAVLRQFLRQKR------PDITVIKRKNKRYSIT 148
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
YS PVW+V++ G++ AI ++ S +R+ + V D Q+ ++
Sbjct: 149 -YSVPVWLVKKMIDQFGEDRAISIL------KSLLVRSKASIRVVNPD---QIEVIAKAT 198
Query: 286 PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAA 345
+ S+ L VK Q + L K+G +QDES+ LV + + ++++D C+A
Sbjct: 199 GAKKSV-LSPCGLVKASGQ-FFDSDLFKQGKITIQDESSQLVAPTLAIKGNETVLDACSA 256
Query: 346 PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT----FAD 401
PGGK +++AS L+ G + A+D+ +L+++ + A + + I+ D R FA
Sbjct: 257 PGGKAVHIASYLTT-GQIIALDLYDHKLKLIKDNADRLKAANYIKPQKLDARKVHKYFAK 315
Query: 402 NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVL 461
++ DK+L+DAPCSG+G++ ++ D+++N+ +D L+ +Q E+LD+ +K GG++
Sbjct: 316 DT---FDKILVDAPCSGIGLIRRKPDIKYNKDSKDFTSLQKIQLEILDSVCQTIKKGGII 372
Query: 462 VYSTCSIDPEENEERVEAFLLRHPEFS------------IDPADGLVPSDFVTKHGFFFS 509
YSTC+I EEN+ ++ FL +HP F +D + P ++T GFF S
Sbjct: 373 TYSTCTIFAEENQMVLKQFLEQHPNFEQVKLNHKKKDIVVDGCLLITPEQYLT-DGFFIS 431
>gi|406831139|ref|ZP_11090733.1| sun protein [Schlesneria paludicola DSM 18645]
Length = 477
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 136/431 (31%), Positives = 195/431 (45%), Gaps = 39/431 (9%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
FR L + L T++ G +R + LD ++ L + +E L ILR+G Y+I
Sbjct: 56 FRESALPASERGLATELACGVVRRQGTLDAILKTLV--ARPADQVEVSLWTILRLGVYQI 113
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
V LD +P +A V E V L K A R VNG+LR L + P +
Sbjct: 114 VMLDGIPSHAAVHETVELCKRAGRMRWSGFVNGVLRGATRLATDQFQTTPSASAVPVSVD 173
Query: 221 R------------------ALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLR 262
R LA +S P+W+ RW K EE ++ W NS R
Sbjct: 174 RHRILNKPVFFEPESDLPAYLAGAFSLPLWLTERWVKRFKPEELFRMGAWFNSPSPLMAR 233
Query: 263 ANSRKGVTRADLVMQLNLLKLQV-PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQD 321
N+ + + ++V + + P E + + F V G V EG +QD
Sbjct: 234 PNTLRS-SYDEVVADFQAAGITIQPLEGT---ESF--VIEGTTRVEALPGFVEGKFVIQD 287
Query: 322 ESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAK 381
SA + PQPGQ + D CAAPGGKT ++A+ + +G + A DI RL I++E A+
Sbjct: 288 FSASRAAVRLAPQPGQRVWDVCAAPGGKTCHLAALMKNEGHILATDIRSDRLEIVHENAQ 347
Query: 382 LHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELK 441
++IR+ D + F T D +L+D PCS GVL+KR + RW + + EL
Sbjct: 348 -RLGATIIRSQLVDEQGF-RLPTGPFDAILVDVPCSNTGVLAKRPEARWRITPDGVRELN 405
Query: 442 ILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSI---------DPA 492
+Q LL + + GG LVYSTCSI+P+ENE V L P + PA
Sbjct: 406 RVQANLLGWSLERLTSGGRLVYSTCSIEPDENENLVRRVLESFPNAKLVEEQTFLPGQPA 465
Query: 493 DGLVPSDFVTK 503
DG + VT
Sbjct: 466 DGAYQALIVTN 476
>gi|449966701|ref|ZP_21812446.1| putative RNA-binding Sun protein [Streptococcus mutans 15VF2]
gi|449169867|gb|EMB72621.1| putative RNA-binding Sun protein [Streptococcus mutans 15VF2]
Length = 437
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 125/420 (29%), Positives = 218/420 (51%), Gaps = 44/420 (10%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L D L+T++V GT+ + L+ + D + +E + +L + Y+I+ LD
Sbjct: 39 LSQADRSLLTELVYGTLTRKITLEWYLAHYIEDR---NKLETWIYYLLMLSLYQILYLDK 95
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P +A+V+E V LAK R GA LVN +LR+ + K P + R R T
Sbjct: 96 IPQHAIVNEAVDLAKSRNR-GAEKLVNAVLRQFLRQKR------PDITVIKRKNKRYSIT 148
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
YS PVW+V++ G++ AI ++ S +R+ + V D Q+ ++
Sbjct: 149 -YSVPVWLVKKMIDQFGEDRAISIL------KSLLVRSKASIRVVNPD---QIEVIAKAT 198
Query: 286 PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAA 345
+ S+ L VK Q + L K+G +QDES+ LV + + ++++D C+A
Sbjct: 199 GAKKSV-LSPCGLVKVSGQ-FFDSDLFKQGKITIQDESSQLVAPTLAIKGNENVLDACSA 256
Query: 346 PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT----FAD 401
PGGK +++AS L+ G + A+D+ +L+++ + A + + I+ D R FA
Sbjct: 257 PGGKAVHIASYLTT-GQIIALDLYDHKLKLIKDNADRLKAANYIKPQKLDARKVHKYFAK 315
Query: 402 NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVL 461
++ DK+L+DAPCSG+G++ ++ D+++N+ +D L+ +Q E+LD+ +K GG++
Sbjct: 316 DT---FDKILVDAPCSGIGLIRRKPDIKYNKDSKDFTSLQKIQLEILDSVCQTIKKGGII 372
Query: 462 VYSTCSIDPEENEERVEAFLLRHPEFS------------IDPADGLVPSDFVTKHGFFFS 509
YSTC+I EEN+ ++ FL +HP F +D + P ++T GFF S
Sbjct: 373 TYSTCTIFAEENQMVLKQFLEQHPNFEQVKLNHKKKDIVVDGCLLITPEQYLT-DGFFIS 431
>gi|392428262|ref|YP_006469273.1| rRNA methylase [Streptococcus intermedius JTH08]
gi|419777713|ref|ZP_14303623.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
intermedius SK54]
gi|383844737|gb|EID82149.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
intermedius SK54]
gi|391757408|dbj|BAM23025.1| rRNA methylase [Streptococcus intermedius JTH08]
Length = 437
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 124/389 (31%), Positives = 201/389 (51%), Gaps = 37/389 (9%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L D LVT+IV GT+ + L+ + + D + S +LL + Y+I LD
Sbjct: 39 LSSADQALVTEIVYGTVARKMTLEWYLSHVIKDREKLDSWVYILL---LLSLYQIHYLDK 95
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P +AVV+E LAK A + G+ VN +LR L L+D + + G R R +
Sbjct: 96 IPAHAVVNEAAELAK-ARKKGSEKFVNAVLRGL--LRDG----VADIAGIKRKNKR-YSV 147
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
YS PVW+V+ + G+ A+ + S LR + + ++ L+
Sbjct: 148 QYSLPVWLVKVLIEEYGETRALAIF------ESLFLRNKA-----------SIRVVDLKC 190
Query: 286 PHELS--LHLDEFIRVKTGL----QNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSI 339
EL L ++ + T L + L ++G +QDES+ LV ++D Q + +
Sbjct: 191 KEELKERLQAEDSLLAPTALVKSHDHFASHYLFEKGAITIQDESSQLVAPIMDVQGDEKV 250
Query: 340 VDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF 399
+D C+APGGKT ++AS L+ G V A+D+ +LR++ E AK V + T D R
Sbjct: 251 LDACSAPGGKTTHIASYLT-TGQVIALDLYDHKLRLIEENAKRLDVADRVITKKLDARRV 309
Query: 400 ADNSTVKC-DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPG 458
+ V DK+L+DAPCSG+G++ ++ D+++N+ D L+ +Q E+LD+ ++ G
Sbjct: 310 FETFGVDAFDKILVDAPCSGIGLIRRKPDIKYNKENADFTSLQKIQLEILDSVCQSLRKG 369
Query: 459 GVLVYSTCSIDPEENEERVEAFLLRHPEF 487
G++ YSTC+I +EN + VE FL HP F
Sbjct: 370 GIITYSTCTIVSQENFQVVEQFLAAHPNF 398
>gi|450100080|ref|ZP_21858652.1| putative RNA-binding Sun protein [Streptococcus mutans SF1]
gi|450169861|ref|ZP_21883239.1| putative RNA-binding Sun protein [Streptococcus mutans SM4]
gi|449220640|gb|EMC20493.1| putative RNA-binding Sun protein [Streptococcus mutans SF1]
gi|449246718|gb|EMC45016.1| putative RNA-binding Sun protein [Streptococcus mutans SM4]
Length = 437
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 124/420 (29%), Positives = 218/420 (51%), Gaps = 44/420 (10%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L D L+T++V GT+ + L+ + D + +E + +L + Y+I+ LD
Sbjct: 39 LSQADRSLLTELVYGTLTRKITLEWYLAHYIEDR---NKLETWIYYLLMLSLYQILYLDK 95
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P +A+V+E V LAK R GA LVN +LR+ + K P + R R T
Sbjct: 96 IPQHAIVNEAVDLAKSRNR-GAEKLVNAVLRQFLRQKR------PDITVIKRKNKRYSIT 148
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
YS PVW+V++ G++ AI ++ S +R+ + V D Q+ ++
Sbjct: 149 -YSVPVWLVKKMIDQFGEDRAISIL------KSLLVRSKASIRVVNPD---QIEVIAKAT 198
Query: 286 PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAA 345
+ S+ L +K Q + L K+G +QDES+ LV + + ++++D C+A
Sbjct: 199 GAKKSV-LSPCGLIKASGQ-FFDSDLFKQGKITIQDESSQLVAPTLAIKGNETVLDACSA 256
Query: 346 PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT----FAD 401
PGGK +++AS L+ G + A+D+ +L+++ + A + + I+ D R FA
Sbjct: 257 PGGKAVHIASYLTT-GQIIALDLYDHKLKLIKDNADRLKAANYIKPQKLDARKVHKYFAK 315
Query: 402 NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVL 461
++ DK+L+DAPCSG+G++ ++ D+++N+ +D L+ +Q E+LD+ +K GG++
Sbjct: 316 DT---FDKILVDAPCSGIGLIRRKPDIKYNKDSKDFTSLQKIQLEILDSVCQTIKKGGII 372
Query: 462 VYSTCSIDPEENEERVEAFLLRHPEFS------------IDPADGLVPSDFVTKHGFFFS 509
YSTC+I EEN+ ++ FL +HP F +D + P ++T GFF S
Sbjct: 373 TYSTCTIFAEENQMVLKQFLEQHPNFEQVKLNHKKKDIVVDGCLLITPEQYLT-DGFFIS 431
>gi|450119938|ref|ZP_21865366.1| putative RNA-binding Sun protein [Streptococcus mutans ST6]
gi|449230727|gb|EMC29975.1| putative RNA-binding Sun protein [Streptococcus mutans ST6]
Length = 437
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 125/420 (29%), Positives = 218/420 (51%), Gaps = 44/420 (10%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L D L+T++V GT+ + L+ + D + +E + +L + Y+I+ LD
Sbjct: 39 LSQADRSLLTELVYGTLTRKITLEWYLAHYIEDR---NKLETWIYYLLMLSLYQILYLDK 95
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P +A+V+E V LAK R GA LVN +LR+ + K P + R R T
Sbjct: 96 IPQHAIVNEAVDLAKSRNR-GAEKLVNAVLRQFLRQKR------PDITVIKRKNKRYSIT 148
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
YS PVW+V++ G++ AI ++ S +R+ + V D Q+ ++
Sbjct: 149 -YSVPVWLVKKMIGQFGEDRAISIL------KSLLVRSKASIRVVNPD---QIEVIAKAT 198
Query: 286 PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAA 345
+ S+ L VK Q + L K+G +QDES+ LV + + ++++D C+A
Sbjct: 199 GAKKSV-LSPCGLVKASGQ-FFDSDLFKQGKITIQDESSQLVAPTLAIKGNETVLDACSA 256
Query: 346 PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT----FAD 401
PGGK +++AS L+ G + A+D+ +L+++ + A + + I+ D R FA
Sbjct: 257 PGGKAVHIASYLTT-GQIIALDLYDHKLKLIKDNADRLKAANYIKPQKLDARKVHKYFAK 315
Query: 402 NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVL 461
++ DK+L+DAPCSG+G++ ++ D+++N+ +D L+ +Q E+LD+ +K GG++
Sbjct: 316 DT---FDKILVDAPCSGIGLIRRKPDIKYNKDSKDFTSLQKIQLEILDSVCQTIKKGGII 372
Query: 462 VYSTCSIDPEENEERVEAFLLRHPEFS------------IDPADGLVPSDFVTKHGFFFS 509
YSTC+I EEN+ ++ FL +HP F +D + P ++T GFF S
Sbjct: 373 TYSTCTIFAEENQMVLKQFLEQHPNFEQVKLNHKKKDIVVDGCLLITPEQYLT-DGFFIS 431
>gi|262273082|ref|ZP_06050899.1| ribosomal RNA small subunit methyltransferase B [Grimontia hollisae
CIP 101886]
gi|262222838|gb|EEY74146.1| ribosomal RNA small subunit methyltransferase B [Grimontia hollisae
CIP 101886]
Length = 426
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 131/422 (31%), Positives = 209/422 (49%), Gaps = 35/422 (8%)
Query: 110 RDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPPY 169
RD L+ +I G +RW L+ + L +K + + ++ +G Y++ + +P +
Sbjct: 35 RDGALLQEICYGVLRWLPRLESITQSLM--DKPLKGKQRVFHHLILVGLYQLSYMRIPAH 92
Query: 170 AVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSH 229
A V E V KV +P LVN +LR ++ +L D A A Y H
Sbjct: 93 AAVAETVNATKVLKKPQLRGLVNAVLRSY--QRNQETL--------DAASVAHDAGKYGH 142
Query: 230 PVWMVRRWTK-YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHE 288
P W++ + Y Q E +++ N+ LR N R TR L+ Q E
Sbjct: 143 PGWLLTLLQQAYPTQWE--QVVEANHEKAPMWLRVN-RTHHTREAYKALLD----QAGIE 195
Query: 289 LSLH--LDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAP 346
S+H ++ +++ T G EG +VQD +A L V + PQ G+ I+DCCAAP
Sbjct: 196 TSVHPEAEDALKLATPCDVTALPGF-SEGWVSVQDAAAQLAVDYLKPQAGELILDCCAAP 254
Query: 347 GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STV 405
GGKT ++ +V A+D++ RL + + K ++ + R I D RT +
Sbjct: 255 GGKTCHILEHEPSANVV-AMDVDAARLTRVEDNVKRLKLKA--RVICGDARTPDEWWQGE 311
Query: 406 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465
+ D++LLDAPCS GV+ + D++W RR +D+++L LQ E+LDA +K GG LVY+T
Sbjct: 312 QFDRILLDAPCSATGVIRRHPDIKWLRRADDIDQLVSLQSEILDAMWAQLKSGGTLVYAT 371
Query: 466 CSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARLV 525
CS+ P+EN E+V+AFL R P+ ++ P + P + +DG + A L
Sbjct: 372 CSVTPQENAEQVKAFLTRTPDAVLETGTPTQPGRQIL--------PGQEDMDGFYYAVLK 423
Query: 526 RA 527
+A
Sbjct: 424 KA 425
>gi|450012122|ref|ZP_21829480.1| putative RNA-binding Sun protein [Streptococcus mutans A19]
gi|449188766|gb|EMB90461.1| putative RNA-binding Sun protein [Streptococcus mutans A19]
Length = 440
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 125/420 (29%), Positives = 218/420 (51%), Gaps = 44/420 (10%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L D L+T++V GT+ + L+ + D + +E + +L + Y+I+ LD
Sbjct: 42 LSQADRSLLTELVYGTLTRKITLEWYLAHYIEDR---NKLETWIYYLLMLSLYQILYLDK 98
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P +A+V+E V LAK R GA LVN +LR+ + K P + R R T
Sbjct: 99 IPQHAIVNEAVDLAKSRNR-GAEKLVNAVLRQFLRQKR------PDITVIKRKNKRYSIT 151
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
YS PVW+V++ G++ AI ++ S +R+ + V D Q+ ++
Sbjct: 152 -YSVPVWLVKKMIGQFGEDRAISIL------KSLLVRSKASIRVVNPD---QIEVIAKAT 201
Query: 286 PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAA 345
+ S+ L VK Q + L K+G +QDES+ LV + + ++++D C+A
Sbjct: 202 GAKKSV-LSPCGLVKASGQ-FFDSDLFKQGKITIQDESSQLVAPTLAIKGNETVLDACSA 259
Query: 346 PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT----FAD 401
PGGK +++AS L+ G + A+D+ +L+++ + A + + I+ D R FA
Sbjct: 260 PGGKAVHIASYLTT-GQIIALDLYDHKLKLIKDNADRLKAANYIKPQKLDARKVHKYFAK 318
Query: 402 NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVL 461
++ DK+L+DAPCSG+G++ ++ D+++N+ +D L+ +Q E+LD+ +K GG++
Sbjct: 319 DT---FDKILVDAPCSGIGLIRRKPDIKYNKDSKDFTSLQKIQLEILDSVCQTIKKGGII 375
Query: 462 VYSTCSIDPEENEERVEAFLLRHPEFS------------IDPADGLVPSDFVTKHGFFFS 509
YSTC+I EEN+ ++ FL +HP F +D + P ++T GFF S
Sbjct: 376 TYSTCTIFAEENQMVLKQFLEQHPNFEQVKLNHKKKDIVVDGCLLITPEQYLT-DGFFIS 434
>gi|317501927|ref|ZP_07960111.1| sun protein [Lachnospiraceae bacterium 8_1_57FAA]
gi|336440096|ref|ZP_08619695.1| ribosomal RNA small subunit methyltransferase B [Lachnospiraceae
bacterium 1_1_57FAA]
gi|316896607|gb|EFV18694.1| sun protein [Lachnospiraceae bacterium 8_1_57FAA]
gi|336014445|gb|EGN44294.1| ribosomal RNA small subunit methyltransferase B [Lachnospiraceae
bacterium 1_1_57FAA]
Length = 456
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 140/430 (32%), Positives = 209/430 (48%), Gaps = 29/430 (6%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L+ R+ +T + GT+ +D++ L C + M+PL+ ILR Y+I +D
Sbjct: 39 LEKRERAFITRVTEGTLEHMTEIDYI--LDCFSKVKVKKMKPLIRAILRSAVYQIKYMDS 96
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P +AV E+V+LA G VNG+LR +V D P + + L+
Sbjct: 97 IPDHAVCSESVKLAVKKGFSGLRGYVNGVLRSVVKEIDEVEYPSDPI--------KRLSV 148
Query: 226 IYSHPVWMVRRW--TKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKL 283
YS P W++R W T L E + L + P+ R SR +T L +L +
Sbjct: 149 RYSCPEWIIRLWKETYDLSLIETM-LKDFQTEKPTTIRRCRSR--ITMEQLKKRLEEEHV 205
Query: 284 QVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCC 343
V + L D + K ++ +EGL VQD S+ LV + Q G ++D C
Sbjct: 206 LVENHPYLK-DALLISKYDYLESLET--FREGLFVVQDISSMLVGELAHVQAGAQVIDLC 262
Query: 344 AAPGGKTLYMAS--CLSGQ----GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR 397
AAPGGK L +A + GQ G V A D+ + ++ ++ E + + +V + D
Sbjct: 263 AAPGGKALDVAERILMEGQAGCSGHVEARDLTEYKVSLIEENIERMGLCNVT-AVCQDAS 321
Query: 398 TFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKP 457
+ + S K D V+ D PCSGLGVL K+ DL++ E + L LQ ++L A+ VKP
Sbjct: 322 VYDEKSAGKADIVIADLPCSGLGVLGKKTDLKYKASPEGIVSLVKLQRKILSCAASYVKP 381
Query: 458 GGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPAD---GLVPSDFVTKHGFFFSDPIKH 514
GG L+YSTC+++P+EN E V FL PEF D L + VT++G P H
Sbjct: 382 GGELLYSTCTVNPKENIENVHWFLKEFPEFYADDIREDLCLELRESVTENGCIQLLPGVH 441
Query: 515 SLDGAFAARL 524
DG F ARL
Sbjct: 442 KSDGFFIARL 451
>gi|257425270|ref|ZP_05601695.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 55/2053]
gi|257427930|ref|ZP_05604328.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 65-1322]
gi|257430563|ref|ZP_05606945.1| RNA-binding Sun protein [Staphylococcus aureus subsp. aureus
68-397]
gi|257433324|ref|ZP_05609682.1| RNA-binding Sun protein [Staphylococcus aureus subsp. aureus E1410]
gi|257436166|ref|ZP_05612213.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus M876]
gi|282903770|ref|ZP_06311658.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus C160]
gi|282905534|ref|ZP_06313389.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus Btn1260]
gi|282908510|ref|ZP_06316340.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus WW2703/97]
gi|282913992|ref|ZP_06321779.1| sun protein [Staphylococcus aureus subsp. aureus M899]
gi|282918914|ref|ZP_06326649.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus C427]
gi|282924037|ref|ZP_06331713.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus C101]
gi|283957958|ref|ZP_06375409.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus A017934/97]
gi|293501025|ref|ZP_06666876.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 58-424]
gi|293509984|ref|ZP_06668692.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus M809]
gi|293526572|ref|ZP_06671257.1| sun protein [Staphylococcus aureus subsp. aureus M1015]
gi|297591339|ref|ZP_06949977.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus MN8]
gi|415683805|ref|ZP_11449007.1| hypothetical protein CGSSa00_05338 [Staphylococcus aureus subsp.
aureus CGS00]
gi|417887102|ref|ZP_12531241.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21195]
gi|418566587|ref|ZP_13130960.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21264]
gi|418582051|ref|ZP_13146129.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG1605]
gi|418597658|ref|ZP_13161180.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21342]
gi|418603159|ref|ZP_13166550.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21345]
gi|418891850|ref|ZP_13445965.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG1176]
gi|418897754|ref|ZP_13451824.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIGC341D]
gi|418900624|ref|ZP_13454681.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG1214]
gi|418908928|ref|ZP_13462931.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG149]
gi|418917012|ref|ZP_13470971.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG1267]
gi|418922799|ref|ZP_13476716.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG1233]
gi|418982130|ref|ZP_13529838.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG1242]
gi|418985797|ref|ZP_13533483.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG1500]
gi|257271727|gb|EEV03865.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 55/2053]
gi|257274771|gb|EEV06258.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 65-1322]
gi|257278691|gb|EEV09310.1| RNA-binding Sun protein [Staphylococcus aureus subsp. aureus
68-397]
gi|257281417|gb|EEV11554.1| RNA-binding Sun protein [Staphylococcus aureus subsp. aureus E1410]
gi|257284448|gb|EEV14568.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus M876]
gi|282314009|gb|EFB44401.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus C101]
gi|282316724|gb|EFB47098.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus C427]
gi|282322060|gb|EFB52384.1| sun protein [Staphylococcus aureus subsp. aureus M899]
gi|282327572|gb|EFB57855.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus WW2703/97]
gi|282330826|gb|EFB60340.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus Btn1260]
gi|282595388|gb|EFC00352.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus C160]
gi|283790107|gb|EFC28924.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus A017934/97]
gi|290920644|gb|EFD97707.1| sun protein [Staphylococcus aureus subsp. aureus M1015]
gi|291096030|gb|EFE26291.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 58-424]
gi|291466928|gb|EFF09446.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus M809]
gi|297576225|gb|EFH94941.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus MN8]
gi|315194103|gb|EFU24496.1| hypothetical protein CGSSa00_05338 [Staphylococcus aureus subsp.
aureus CGS00]
gi|341858524|gb|EGS99314.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21195]
gi|371969857|gb|EHO87295.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21264]
gi|374393720|gb|EHQ65024.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21342]
gi|374393888|gb|EHQ65191.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21345]
gi|377703092|gb|EHT27408.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG1214]
gi|377704411|gb|EHT28720.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG1242]
gi|377705615|gb|EHT29919.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG1500]
gi|377710461|gb|EHT34699.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG1605]
gi|377731182|gb|EHT55239.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG1176]
gi|377736122|gb|EHT60152.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG1233]
gi|377750186|gb|EHT74124.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG1267]
gi|377753966|gb|EHT77876.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG149]
gi|377760789|gb|EHT84665.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIGC341D]
Length = 435
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 129/428 (30%), Positives = 214/428 (50%), Gaps = 58/428 (13%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTF--SSMEPLLLQILRIGFYEIVK 163
+L+ D L T+IV GT++ + LD + K F + ++ + Q+L + Y+ V
Sbjct: 35 ELNVMDKALFTEIVYGTVKRKYTLDFYL-------KPFVKTKIKAWVRQLLWMSIYQYVY 87
Query: 164 LD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVL--LKDNNSLPLPKLEGNDRAQA 220
LD +P +A+++E V +AK GN+VNGILR ++ L D N + PK
Sbjct: 88 LDKVPNHAIINEAVEIAKERGGYHNGNVVNGILRTMMRSDLPDFNEIADPK--------- 138
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADL-----V 275
+ +A YS P W++ W + G EE ++ S ++RAN +TRA L
Sbjct: 139 KRMAIEYSMPKWIIDHWATHYGLEETETILQSFLETTSTTVRAN----LTRASLDDIIEK 194
Query: 276 MQLNLLKLQVPHEL--SLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDP 333
+Q ++ H+L LH+ G Q +I + K+G ++QD+S+ V +++
Sbjct: 195 LQDEGYDVEKDHDLPYCLHI--------GGQPIIHSRSFKDGFVSIQDKSSMFVAHIMNV 246
Query: 334 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILN-ETAKLHQVNSVIRTI 392
++D C+APGGK ++A L +G V A DI+ ++ ++N KL N I+
Sbjct: 247 DRHDHVLDACSAPGGKACHIAEVLMPEGQVDASDIHDHKIDLINFNIKKLRLTN--IKAF 304
Query: 393 HADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAAS 452
D D + DK+L+DAPCSGLGV+ + ++++ + + +E L LQ E+L+
Sbjct: 305 QHDATKPYDKT---YDKILVDAPCSGLGVMRHKPEIKYTQSKQHIESLVDLQLEILENVK 361
Query: 453 LLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADG-----------LVPSDFV 501
VK GG ++YSTC+I+ ENE + FL + F +P ++P DF
Sbjct: 362 NNVKIGGEIIYSTCTIEQLENENVIYTFLKNNKNFEFEPFQHPITGELVKTLQIMPQDF- 420
Query: 502 TKHGFFFS 509
GFF +
Sbjct: 421 NSDGFFIT 428
>gi|261346903|ref|ZP_05974547.1| ribosomal RNA small subunit methyltransferase B [Providencia
rustigianii DSM 4541]
gi|282564970|gb|EFB70505.1| ribosomal RNA small subunit methyltransferase B [Providencia
rustigianii DSM 4541]
Length = 428
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 132/424 (31%), Positives = 212/424 (50%), Gaps = 34/424 (8%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
++++++D L+ ++ G +R+ L+ I L EK + + +L ++ +G Y+++
Sbjct: 34 RNINEKDKALLQEMCFGVLRYLPKLEWFISQLM--EKPLTGKQRILHYLIMVGIYQLLYT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P +A + E V A RP L+NG+LR + + L + N+ +Q
Sbjct: 92 RIPAHAALAETVDGAVALKRPQLKGLINGVLRSFL----RQQVQLEERNHNNNSQ----- 142
Query: 225 TIYSHPVWMVRRWT-KYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKL 283
Y HP W+++R Y Q + I + NN P LR N + T L + L +
Sbjct: 143 --YLHPSWLLKRLQIAYPDQWQDI--VDANNQRPPMWLRVNPQHNTTDQYLTL---LEQA 195
Query: 284 QVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCC 343
+ L +R++ +V + EG VQD SA ++ P G SI+D C
Sbjct: 196 GITAHLHPTHPNAVRLEDAT-SVNRLPGFDEGWSTVQDVSAQGCAELLSPVDGDSILDLC 254
Query: 344 AAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNET-AKLHQVNSVIRTIHADLRTFADN 402
AAPGGKT ++ L+ + V A+DI+ RL+ + E +L Q VI+ +A
Sbjct: 255 AAPGGKTTHILE-LAPKAHVLAVDIDDSRLKRVKENLQRLKQQAIVIQGDGTKPEEWAHG 313
Query: 403 STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLV 462
+ D++LLDAPCS GV+ + D++W RR D+ EL LQ ++L+A +KPGG LV
Sbjct: 314 Q--QFDRILLDAPCSATGVIRRHPDIKWLRRDSDINELSQLQFQILEAIWPYLKPGGTLV 371
Query: 463 YSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAA 522
Y+TCSI PEEN +++ FL +H + SI DG T+ G P DG F A
Sbjct: 372 YATCSIIPEENSLQIQRFLTKHVDASI--TDG-------TEFGLQIL-PSTTGGDGFFYA 421
Query: 523 RLVR 526
RL++
Sbjct: 422 RLLK 425
>gi|403253553|ref|ZP_10919854.1| 16S rRNA methyltransferase B [Thermotoga sp. EMP]
gi|402811087|gb|EJX25575.1| 16S rRNA methyltransferase B [Thermotoga sp. EMP]
Length = 431
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 118/393 (30%), Positives = 195/393 (49%), Gaps = 46/393 (11%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
LDDRD R ++V G +R LD I L + + P + LR+G Y+++ ++
Sbjct: 34 LDDRDRRFFKELVWGVVRKEELLDWYINQLLKKK----DIPPAVRVALRMGAYQLLFMNS 89
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P YA V E V+L K LVN +LR+L ++P PK L
Sbjct: 90 VPDYAAVSETVKLVK---NENFKKLVNAVLRRL------RTVPEPK----------ELHL 130
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
+YSHP W+V W +L +E +++M WN LR NS L K +V
Sbjct: 131 VYSHPEWIVNYWRSFLPEEAVLRIMKWNQEPLPVMLRVNS------------LAATKEEV 178
Query: 286 PHELSLHLDEFIRVKTGLQNVI---------QAGLLKEGLCAVQDESAGLVVAVVDPQPG 336
L+ E + K ++I + ++ +GL +VQ ES+ LV ++ +PG
Sbjct: 179 TKILAEEGTEAVPGKHAPFSLIVRKLGVPMNDSRVINDGLASVQGESSQLVPFFMELKPG 238
Query: 337 QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADL 396
++D CAAPGGKT +A + QG + A+DI++ +++++ + AK +++S I T AD
Sbjct: 239 LRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSS-IETKIADA 297
Query: 397 RTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVK 456
+ D+VL+DAPC+ LG ++ ED ++ +Q ++ A L++
Sbjct: 298 ERLTEYVQDTFDRVLVDAPCTSLGTARNHPEVLRRVNKEDFKKFSEIQLRMVQQAWQLLE 357
Query: 457 PGGVLVYSTCSIDPEENEERVEAFLLRHPEFSI 489
GG+L+YSTC++ EEN E V+ F+ + +
Sbjct: 358 KGGILLYSTCTVTKEENTEVVKRFVYEQKDVEV 390
>gi|49483380|ref|YP_040604.1| hypothetical protein SAR1193 [Staphylococcus aureus subsp. aureus
MRSA252]
gi|295427702|ref|ZP_06820334.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus EMRSA16]
gi|49241509|emb|CAG40195.1| hypothetical protein SAR1193 [Staphylococcus aureus subsp. aureus
MRSA252]
gi|295128060|gb|EFG57694.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus EMRSA16]
Length = 435
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 129/428 (30%), Positives = 214/428 (50%), Gaps = 58/428 (13%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTF--SSMEPLLLQILRIGFYEIVK 163
+L+ D L T+IV GT++ + LD + K F + ++ + Q+L + Y+ V
Sbjct: 35 ELNVMDKALFTEIVYGTVKRKYTLDFYL-------KPFVKTKIKAWVRQLLWMSIYQYVY 87
Query: 164 LD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVL--LKDNNSLPLPKLEGNDRAQA 220
LD +P +A+++E V +AK GN+VNGILR ++ L D N + PK
Sbjct: 88 LDKVPNHAIINEAVEIAKERGGYHNGNVVNGILRTMMRSDLPDFNEIADPK--------- 138
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADL-----V 275
+ +A YS P W++ W + G EE ++ S ++RAN +TRA L
Sbjct: 139 KRMAIEYSMPKWIIDHWATHYGLEETETILQSFLETTSTTVRAN----MTRASLDDIIEK 194
Query: 276 MQLNLLKLQVPHEL--SLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDP 333
+Q ++ H+L LH+ G Q +I + K+G ++QD+S+ V +++
Sbjct: 195 LQDEGYDVEKDHDLPYCLHI--------GGQPIIHSRSFKDGFVSIQDKSSMFVAHIMNV 246
Query: 334 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILN-ETAKLHQVNSVIRTI 392
++D C+APGGK ++A L +G V A DI+ ++ ++N KL N I+
Sbjct: 247 DRHDHVLDACSAPGGKACHIAEVLMPEGQVDASDIHDHKIDLINFNIKKLRLTN--IKAF 304
Query: 393 HADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAAS 452
D D + DK+L+DAPCSGLGV+ + ++++ + + +E L LQ E+L+
Sbjct: 305 QHDATKPYDKT---YDKILVDAPCSGLGVMRHKPEIKYTQSKQHIESLVDLQLEILENVK 361
Query: 453 LLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADG-----------LVPSDFV 501
VK GG ++YSTC+I+ ENE + FL + F +P ++P DF
Sbjct: 362 NNVKIGGEIIYSTCTIEQLENENVIYTFLKNNKNFEFEPFQHPITGELVKTLQIMPQDF- 420
Query: 502 TKHGFFFS 509
GFF +
Sbjct: 421 NSDGFFIT 428
>gi|387786689|ref|YP_006251785.1| putative RNA-binding Sun protein [Streptococcus mutans LJ23]
gi|449898983|ref|ZP_21790854.1| putative RNA-binding Sun protein [Streptococcus mutans R221]
gi|449928829|ref|ZP_21801336.1| putative RNA-binding Sun protein [Streptococcus mutans 3SN1]
gi|449979533|ref|ZP_21816739.1| putative RNA-binding Sun protein [Streptococcus mutans 5SM3]
gi|450023272|ref|ZP_21830508.1| putative RNA-binding Sun protein [Streptococcus mutans U138]
gi|450115914|ref|ZP_21864192.1| putative RNA-binding Sun protein [Streptococcus mutans ST1]
gi|379133090|dbj|BAL69842.1| putative RNA-binding Sun protein [Streptococcus mutans LJ23]
gi|449164901|gb|EMB67935.1| putative RNA-binding Sun protein [Streptococcus mutans 3SN1]
gi|449177809|gb|EMB80095.1| putative RNA-binding Sun protein [Streptococcus mutans 5SM3]
gi|449193686|gb|EMB95062.1| putative RNA-binding Sun protein [Streptococcus mutans U138]
gi|449227501|gb|EMC26919.1| putative RNA-binding Sun protein [Streptococcus mutans ST1]
gi|449259023|gb|EMC56573.1| putative RNA-binding Sun protein [Streptococcus mutans R221]
Length = 437
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 125/420 (29%), Positives = 218/420 (51%), Gaps = 44/420 (10%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L D L+T++V GT+ + L+ + D + +E + +L + Y+I+ LD
Sbjct: 39 LSQADRSLLTELVYGTLTRKITLEWYLAHYIEDR---NKLETWIYYLLMLSLYQILYLDK 95
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P +A+V+E V LAK R GA LVN +LR+ + K P + R R T
Sbjct: 96 IPQHAIVNEAVDLAKSRNR-GAEKLVNAVLRQFLRQKR------PDITVIKRKNKRYSIT 148
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
YS PVW+V++ G++ AI ++ S +R+ + V D Q+ ++
Sbjct: 149 -YSVPVWLVKKMIGQFGEDRAISIL------KSLLVRSKASIRVVNPD---QIEVIAKAT 198
Query: 286 PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAA 345
+ S+ L VK Q + L K+G +QDES+ LV + + ++++D C+A
Sbjct: 199 GAKKSV-LSPCGLVKASGQ-FFDSDLFKQGKITIQDESSQLVAPTLAIKGNETVLDACSA 256
Query: 346 PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT----FAD 401
PGGK +++AS L+ G + A+D+ +L+++ + A + + I+ D R FA
Sbjct: 257 PGGKAVHIASYLTT-GQIIALDLYDHKLKLIKDNADRLKAANYIKPQKLDARKVHKYFAK 315
Query: 402 NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVL 461
++ DK+L+DAPCSG+G++ ++ D+++N+ +D L+ +Q E+LD+ +K GG++
Sbjct: 316 DT---FDKILVDAPCSGIGLIRRKPDIKYNKDSKDFTSLQKIQLEILDSVCQTIKKGGII 372
Query: 462 VYSTCSIDPEENEERVEAFLLRHPEFS------------IDPADGLVPSDFVTKHGFFFS 509
YSTC+I EEN+ ++ FL +HP F +D + P ++T GFF S
Sbjct: 373 TYSTCTIFAEENQMVLKQFLEQHPNFEQVKLNHKKKDIVVDGCLLITPEQYLT-DGFFIS 431
>gi|418914315|ref|ZP_13468287.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIGC340D]
gi|377757817|gb|EHT81705.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIGC340D]
Length = 435
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 125/427 (29%), Positives = 214/427 (50%), Gaps = 56/427 (13%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTF--SSMEPLLLQILRIGFYEIVK 163
+L+ D L T+IV GT++ + LD + K F + ++ + Q+L + Y+ V
Sbjct: 35 ELNAMDKALFTEIVYGTVKRKYTLDFYL-------KPFVKTKIKAWVRQLLWMSIYQYVY 87
Query: 164 LD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVL--LKDNNSLPLPKLEGNDRAQA 220
LD +P +A+++E V +AK GN+VNGILR ++ L D N + PK
Sbjct: 88 LDKVPNHAIINEAVEIAKERGGYHNGNVVNGILRTMMRSDLPDFNEIADPK--------- 138
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADL-----V 275
+ +A YS P W++ W + G EE ++ S ++RAN +TRA L
Sbjct: 139 KRMAIEYSMPKWIIDHWATHYGLEETETILQSFLETTSTTVRAN----LTRASLDDIIEK 194
Query: 276 MQLNLLKLQVPHEL--SLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDP 333
+Q ++ H+L LH+ G Q +I + K+G ++QD+S+ V +++
Sbjct: 195 LQDEGYDVEKDHDLPYCLHI--------GGQPIIHSRSFKDGFVSIQDKSSMFVAHIMNV 246
Query: 334 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIH 393
++D C+APGGK ++A L +G V A DI+ ++ ++N K ++ ++ H
Sbjct: 247 DRHDHVLDACSAPGGKACHIAEVLMPEGQVDASDIHDHKIDLINFNIKKLRLTNIEAFQH 306
Query: 394 ADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASL 453
+ + DK+L+DAPCSGLGV+ + ++++ + + +E L LQ E+L+
Sbjct: 307 DATKPYDKT----YDKILVDAPCSGLGVMRHKPEIKYTQSKQHIESLVELQLEILENVKN 362
Query: 454 LVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADG-----------LVPSDFVT 502
VK GG ++YSTC+I+ ENE + FL + F +P ++P DF
Sbjct: 363 NVKIGGEIIYSTCTIEQLENENVIYTFLKNNKNFEFEPFQHPITGELVKTLQIMPQDF-N 421
Query: 503 KHGFFFS 509
GFF +
Sbjct: 422 SDGFFIT 428
>gi|347542352|ref|YP_004856988.1| ribosomal RNA small subunit methyltransferase B [Candidatus
Arthromitus sp. SFB-rat-Yit]
gi|346985387|dbj|BAK81062.1| ribosomal RNA small subunit methyltransferase B [Candidatus
Arthromitus sp. SFB-rat-Yit]
Length = 435
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 119/395 (30%), Positives = 209/395 (52%), Gaps = 36/395 (9%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCH--DEKTFSSMEPLLLQILRIGFYEIVK 163
DL D +LVT+IV GTIR++ +D ++ D+ S++ ILR Y++
Sbjct: 35 DLKYIDKKLVTEIVYGTIRYKLTIDGILSKFVKKLDQNDISTI------ILRSAIYQLKY 88
Query: 164 LD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARA 222
LD +P Y+V++E+V +AK R +G VNG+LR + K ++G
Sbjct: 89 LDKIPEYSVLNESVEVAKKLCRNKSG-FVNGVLRSYLRNK-------KLIDG----YKNT 136
Query: 223 LATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLK 282
L YS WM++ + + I LM N R NS K +++ D + +
Sbjct: 137 LQYEYSFSSWMIKLFKDQYSKN-YISLMEALNKRSETCYRVNS-KIISKKDFIEKF---- 190
Query: 283 LQVPHELSLH-LDEF---IRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQS 338
E + +D F I++K+ L N+ Q+ L K +VQ S+ + +++P
Sbjct: 191 ---GDEFKIEDIDGFKNAIKIKS-LINISQSELYKNSFISVQGLSSQVACEILNPIEDDV 246
Query: 339 IVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT 398
I+D CAAPGGK+ Y+A + + + D+ R+ ++ +A+ ++NS+ I+ D
Sbjct: 247 IIDLCAAPGGKSTYIAELSKDKCKIISCDVYDHRIELIKNSARRLKLNSIDYFIN-DATI 305
Query: 399 FADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPG 458
+ K DKVL+DAPCSGLGV++K+ +++W + + D++E+ +Q +++ AS VK
Sbjct: 306 LNEKFIDKADKVLVDAPCSGLGVINKKPEIKWFKNISDLKEIINIQRKIILNASRYVKSS 365
Query: 459 GVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPAD 493
GVL+Y+TC+++ ENEE ++ FL + +F ++ +
Sbjct: 366 GVLMYTTCTLNKNENEEIIKWFLRSNSDFVVEEIE 400
>gi|238752659|ref|ZP_04614130.1| Ribosomal RNA small subunit methyltransferase B [Yersinia rohdei
ATCC 43380]
gi|238709086|gb|EEQ01333.1| Ribosomal RNA small subunit methyltransferase B [Yersinia rohdei
ATCC 43380]
Length = 429
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 127/420 (30%), Positives = 215/420 (51%), Gaps = 34/420 (8%)
Query: 104 TKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVK 163
K + D+D L+ ++ GT+R L+ I L + + + + ++ +G Y+++
Sbjct: 33 NKSISDKDRALLQELCFGTLRVLPQLEWCIQQLM--ARPMTGKQRVFHYLIMVGLYQLIY 90
Query: 164 LDMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARAL 223
+PP+A + E V A RP L+NG+LR+ + L + N+ +
Sbjct: 91 TRIPPHAALAETVEGATALKRPQLKGLINGVLRQF----QRQQVELLERAANNESH---- 142
Query: 224 ATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKL 283
Y HP W++ R K ++ +++ NN P LR SR +R++ + L +
Sbjct: 143 ---YLHPSWLLAR-IKQAYPDQWQQILEANNQKPPMWLRV-SRLHHSRSEYLELLKQADI 197
Query: 284 Q-VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 342
+ +PH++ + +R+ T +V G VQD SA V ++ PQ G+ I+D
Sbjct: 198 EALPHDV---YPDAVRLITPC-SVNDLPGFDLGWVTVQDASAQGCVDLLSPQNGEQILDL 253
Query: 343 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT---F 399
CAAPGGKT ++ + + V A+DI++ RL + E + ++++ +R D RT +
Sbjct: 254 CAAPGGKTTHILEA-APKAHVLAVDIDEQRLSRVKENLQRLKLHADVRV--GDGRTPDEW 310
Query: 400 ADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGG 459
N + D++LLDAPCS GV+ + D++W RR D+ EL LQ E+++A +K GG
Sbjct: 311 CGNQ--QFDRILLDAPCSATGVIRRHPDIKWLRRNSDIAELAQLQSEIIEAIWPKLKKGG 368
Query: 460 VLVYSTCSIDPEENEERVEAFLLRHPEFS-IDPADGLVPSDFVTKH-----GFFFSDPIK 513
V+VY+TCSI PEEN++++ AFL RH E ++ P H GFF++ IK
Sbjct: 369 VMVYATCSILPEENQQQIAAFLQRHSEAELVETGTTSAPGRQNLPHPEDGDGFFYAKLIK 428
>gi|421276664|ref|ZP_15727485.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
mitis SPAR10]
gi|395876870|gb|EJG87942.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
mitis SPAR10]
Length = 437
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 122/381 (32%), Positives = 200/381 (52%), Gaps = 29/381 (7%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPY 169
D LVT++V GT+ + L+ + D S L +L + Y++ LD +P +
Sbjct: 42 DKGLVTELVYGTVARKLTLEWYLSHFIEDRDKLDSW---LYVLLLMSVYQLQYLDKLPDH 98
Query: 170 AVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSH 229
AVV+E V +AK+ + G+ LVN +LR++ L++ LP R R + YS
Sbjct: 99 AVVNEAVEIAKLR-KKGSEKLVNAVLRRI--LREG----LPDTASIKRKNKRD-SIAYSL 150
Query: 230 PVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHEL 289
PVW+V + + G+E A + SL ++ + DL ++ + L +
Sbjct: 151 PVWLVSKLKEEYGEERAQAIFE--------SLLQRNKASIRVTDLSLKEEIKALLDASDS 202
Query: 290 SLHLDEFIRVKTGLQNVIQAG--LLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPG 347
+L ++ + AG L EG +QDES+ LV +D Q + ++D CAAPG
Sbjct: 203 ALSASGLVKEQGHF-----AGHDLFAEGAITIQDESSQLVAPTLDLQGEEQVLDACAAPG 257
Query: 348 GKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVK 406
GKT +MAS L+ G V A+D+ +L ++ E A+ V ++T D R + +
Sbjct: 258 GKTAHMASYLT-TGQVTALDLYDHKLTLIQENAQRLGVADRVQTQKLDARKVHEFFGKDQ 316
Query: 407 CDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTC 466
DK+L+DAPCSG+G+L ++ D+++N+ D L+ +Q E+L + ++ GG++ YSTC
Sbjct: 317 FDKILVDAPCSGIGLLRRKPDIKYNKDTADFASLQEIQLEILGSVCQTLRKGGIITYSTC 376
Query: 467 SIDPEENEERVEAFLLRHPEF 487
+I EEN + V+AFL HPEF
Sbjct: 377 TIVSEENFQVVQAFLESHPEF 397
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.321 0.136 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,057,491,976
Number of Sequences: 23463169
Number of extensions: 343200828
Number of successful extensions: 844808
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 7300
Number of HSP's successfully gapped in prelim test: 1338
Number of HSP's that attempted gapping in prelim test: 820349
Number of HSP's gapped (non-prelim): 9776
length of query: 528
length of database: 8,064,228,071
effective HSP length: 147
effective length of query: 381
effective length of database: 8,910,109,524
effective search space: 3394751728644
effective search space used: 3394751728644
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 79 (35.0 bits)