BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009708
(528 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P72943|RSMB_SYNY3 Ribosomal RNA small subunit methyltransferase B OS=Synechocystis
sp. (strain PCC 6803 / Kazusa) GN=rsmB PE=3 SV=1
Length = 446
Score = 202 bits (515), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 147/426 (34%), Positives = 213/426 (50%), Gaps = 19/426 (4%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L D R T++V G +R +R LD LI L ++ P L +I+++G Y++ LD
Sbjct: 35 LSPPDRRFCTELVYGVVRRQRTLDCLIEQL--GDRPIGKQPPDLRRIVQLGLYQLRYLDQ 92
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A V+ V LAK G +VNG+LR+ ++ L + + +L
Sbjct: 93 VPASAAVNTGVDLAKANGLKGLSKVVNGMLRRYQRAEEQGKNILDQ-------EKISLGE 145
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV 285
YS P W++ + + G+ E L + N +PS LR N K +R ++ L L L
Sbjct: 146 QYSFPDWLMELFEQTWGKAETESLCAYFNQNPSLDLRINPLK-TSRVEVAQSLAELNLTT 204
Query: 286 PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAA 345
L + KTG + Q EG VQD SA V +++PQP ++I D CAA
Sbjct: 205 TAMAGLPQGLRLGGKTG--AITQLPGFAEGWWTVQDASAQWVAQILNPQPEETIFDVCAA 262
Query: 346 PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTV 405
PGGKT ++A + QG +YA D + RL+ L T + + S I+ DL V
Sbjct: 263 PGGKTTHIAELMGDQGQIYAGDRHGWRLQKLAVTQQRLGLTS-IKIWEGDLTQPGVKPPV 321
Query: 406 K-CDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464
+ D+ LLD PCSGLG L + DLRW + + L LQ LL A + LVK GG LVYS
Sbjct: 322 ELVDRALLDVPCSGLGTLHRNPDLRWRQTPATIATLLPLQQALLKAIAPLVKSGGTLVYS 381
Query: 465 TCSIDPEENEERVEAFLLRHPEFSIDPADGLVP---SDFVTKHGFFFSDPIKHSLDGAFA 521
TC+++P ENE ++E FL H ++ +P + P ++ VT G P H DG F
Sbjct: 382 TCTLNPAENEAQIERFLQDHEDWRSEPFEWTSPQGQTNSVTS-GMLTILPHHHHQDGFFI 440
Query: 522 ARLVRA 527
A L +A
Sbjct: 441 ANLKKA 446
>sp|P94464|RSMB_BACSU Ribosomal RNA small subunit methyltransferase B OS=Bacillus
subtilis (strain 168) GN=rsmB PE=3 SV=2
Length = 447
Score = 194 bits (492), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 117/391 (29%), Positives = 218/391 (55%), Gaps = 18/391 (4%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
++ +L D++ L+T++V GT++ + LD+++ + + ++P ++Q+LR+ Y++
Sbjct: 32 IKSNELSDQNRGLLTELVYGTLQNKIALDYMLKPFINKPQ---KVKPWVIQLLRLSLYQM 88
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
L+ +P A + E V +AK+ G + VNG+LR + +P + +
Sbjct: 89 EYLEKIPDRAAIHEAVEIAKIRGHKGIASFVNGVLRSI------QREGVPSFDAIEDP-V 141
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
R LAT SHP W+V+ W G E A K+ + P +LR N K RA+L+ Q+
Sbjct: 142 RRLATETSHPEWLVKEWADAYGFEAAEKICRIHLIPPKQTLRVNQMKA-DRAELLDQMAA 200
Query: 281 LKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIV 340
++V E ++ +++ G + + G ++QDES+ LV +DP+ ++++
Sbjct: 201 EGIEV--EKGDLAEDAVKLLKG--TIAGTHFFQNGEVSIQDESSMLVARALDPKSDETVL 256
Query: 341 DCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 400
D CAAPGGK+ ++A + +G V ++D++K +++++ E A + ++I D R
Sbjct: 257 DACAAPGGKSAHIAELMKNKGSVTSLDLHKHKVKLIKEAADRLGL-TIIHAETMDARKAG 315
Query: 401 DN-STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGG 459
+ + D++L+DAPCSG GV+ ++ D+++ ++ +D L +Q +L + LVK GG
Sbjct: 316 ETFENEQFDRILVDAPCSGFGVIRRKPDMKYTKKPDDSARLAEIQLSILREIAPLVKKGG 375
Query: 460 VLVYSTCSIDPEENEERVEAFLLRHPEFSID 490
LVYSTC++D EN+E + AF+ HP+F D
Sbjct: 376 TLVYSTCTMDRTENDEVIHAFIQEHPDFEPD 406
>sp|A9R925|RSMB_YERPG Ribosomal RNA small subunit methyltransferase B OS=Yersinia pestis
bv. Antiqua (strain Angola) GN=rsmB PE=3 SV=2
Length = 429
Score = 179 bits (455), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 135/420 (32%), Positives = 217/420 (51%), Gaps = 36/420 (8%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
K++ D+D L+ ++ GT+R L+ I L + + + + ++ +G Y+++
Sbjct: 34 KNISDKDRALLQELCFGTLRVLPQLEWCIQQLM--ARPMTGKQRVFHYLIMVGLYQLIYT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+PP+A + E V A V RP L+NG+LR+ + L + ND
Sbjct: 92 RIPPHAALAETVEGATVLKRPQLKGLINGVLRQF---QRQQVELLERAVNND-------- 140
Query: 225 TIYSHPVWMVRRWTK-YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKL 283
+ Y HP W++ R + Y Q + I + NN P LR N R+ +R++ + L +
Sbjct: 141 SHYLHPSWLLARIKQAYPAQWQQI--LDANNQRPPMWLRVN-RQHHSRSEYLELLTQADI 197
Query: 284 QV-PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 342
PH + + +R+ T V + G VQD SA V ++DPQ G+ I+D
Sbjct: 198 NAEPHPI---YRDAVRLITPC-AVNHLPGFELGWVTVQDASAQGCVDLLDPQNGEQILDL 253
Query: 343 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR---TF 399
CAAPGGKT ++ + + V A+DI++ RL + E + Q+ +V+R D R T+
Sbjct: 254 CAAPGGKTTHILEA-APKAHVLAVDIDEQRLSRVKENLQRLQLQAVVRV--GDGRAPDTW 310
Query: 400 ADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGG 459
+ + D++LLDAPCS GV+ + D++W RR D+ EL LQ E+++A +K GG
Sbjct: 311 CGDQ--QFDRILLDAPCSATGVIRRHPDIKWLRRDRDISELAQLQSEIIEAIWPKLKHGG 368
Query: 460 VLVYSTCSIDPEENEERVEAFLLRHPEFSI-DPADGLVPSDFVTKH-----GFFFSDPIK 513
VLVY+TCSI PEEN++++ AFL RHPE + + P H GFF++ IK
Sbjct: 369 VLVYATCSILPEENQQQIAAFLQRHPEAQLTETGTTAAPGKQNLPHPEDGDGFFYAKIIK 428
>sp|B1JJH6|RSMB_YERPY Ribosomal RNA small subunit methyltransferase B OS=Yersinia
pseudotuberculosis serotype O:3 (strain YPIII) GN=rsmB
PE=3 SV=1
Length = 429
Score = 177 bits (450), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 135/420 (32%), Positives = 216/420 (51%), Gaps = 36/420 (8%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
K++ D+D L+ ++ GT+R L+ I L + + + + ++ +G Y+++
Sbjct: 34 KNISDKDRALLQELCFGTLRVLPQLEWCIQQLM--ARPMTGKQRVFHYLIMVGLYQLIYT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+PP+A + E V A V RP L+NG+LR+ + L + ND
Sbjct: 92 RIPPHAALAETVEGATVLKRPQLKGLINGVLRQF---QRQQVELLERAVNND-------- 140
Query: 225 TIYSHPVWMVRRWTK-YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKL 283
+ Y HP W++ R + Y Q + I + NN P LR N R +R++ + L +
Sbjct: 141 SHYLHPSWLLARIKQAYPAQWQQI--LDANNQRPPMWLRVN-RLHHSRSEYLELLTQADI 197
Query: 284 QV-PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 342
PH + + +R+ T V + G VQD SA V ++DPQ G+ I+D
Sbjct: 198 NAEPHPI---YRDAVRLITPC-AVNHLPGFELGWVTVQDASAQGCVDLLDPQNGEQILDL 253
Query: 343 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR---TF 399
CAAPGGKT ++ + + V A+DI++ RL + E + Q+ +V+R D R T+
Sbjct: 254 CAAPGGKTTHILEA-APKAHVLAVDIDEQRLSRVKENLQRLQLQAVVRV--GDGRAPDTW 310
Query: 400 ADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGG 459
+ + D++LLDAPCS GV+ + D++W RR D+ EL LQ E+++A +K GG
Sbjct: 311 CGDQ--QFDRILLDAPCSATGVIRRHPDIKWLRRDRDISELAQLQSEIIEAIWPKLKHGG 368
Query: 460 VLVYSTCSIDPEENEERVEAFLLRHPEFSI-DPADGLVPSDFVTKH-----GFFFSDPIK 513
VLVY+TCSI PEEN++++ AFL RHPE + + P H GFF++ IK
Sbjct: 369 VLVYATCSILPEENQQQIAAFLQRHPEAQLTETGTTAAPGKQNLPHPEDGDGFFYAKIIK 428
>sp|Q664V2|RSMB_YERPS Ribosomal RNA small subunit methyltransferase B OS=Yersinia
pseudotuberculosis serotype I (strain IP32953) GN=rsmB
PE=3 SV=1
Length = 429
Score = 177 bits (450), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 135/420 (32%), Positives = 216/420 (51%), Gaps = 36/420 (8%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
K++ D+D L+ ++ GT+R L+ I L + + + + ++ +G Y+++
Sbjct: 34 KNISDKDRALLQELCFGTLRVLPQLEWCIQQLM--ARPMTGKQRVFHYLIMVGLYQLIYT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+PP+A + E V A V RP L+NG+LR+ + L + ND
Sbjct: 92 RIPPHAALAETVEGATVLKRPQLKGLINGVLRQF---QRQQVELLERAVNND-------- 140
Query: 225 TIYSHPVWMVRRWTK-YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKL 283
+ Y HP W++ R + Y Q + I + NN P LR N R +R++ + L +
Sbjct: 141 SHYLHPSWLLARIKQAYPAQWQQI--LDANNQRPPMWLRVN-RLHHSRSEYLELLTQADI 197
Query: 284 QV-PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 342
PH + + +R+ T V + G VQD SA V ++DPQ G+ I+D
Sbjct: 198 NAEPHPI---YRDAVRLITPC-AVNHLPGFELGWVTVQDASAQGCVDLLDPQNGEQILDL 253
Query: 343 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR---TF 399
CAAPGGKT ++ + + V A+DI++ RL + E + Q+ +V+R D R T+
Sbjct: 254 CAAPGGKTTHILEA-APKAHVLAVDIDEQRLSRVKENLQRLQLQAVVRV--GDGRAPDTW 310
Query: 400 ADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGG 459
+ + D++LLDAPCS GV+ + D++W RR D+ EL LQ E+++A +K GG
Sbjct: 311 CGDQ--QFDRILLDAPCSATGVIRRHPDIKWLRRDRDISELAQLQSEIIEAIWPKLKHGG 368
Query: 460 VLVYSTCSIDPEENEERVEAFLLRHPEFSI-DPADGLVPSDFVTKH-----GFFFSDPIK 513
VLVY+TCSI PEEN++++ AFL RHPE + + P H GFF++ IK
Sbjct: 369 VLVYATCSILPEENQQQIAAFLQRHPEAQLTETGTTAAPGKQNLPHPEDGDGFFYAKIIK 428
>sp|A4TH21|RSMB_YERPP Ribosomal RNA small subunit methyltransferase B OS=Yersinia pestis
(strain Pestoides F) GN=rsmB PE=3 SV=1
Length = 429
Score = 177 bits (450), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 135/420 (32%), Positives = 216/420 (51%), Gaps = 36/420 (8%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
K++ D+D L+ ++ GT+R L+ I L + + + + ++ +G Y+++
Sbjct: 34 KNISDKDRALLQELCFGTLRVLPQLEWCIQQLM--ARPMTGKQRVFHYLIMVGLYQLIYT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+PP+A + E V A V RP L+NG+LR+ + L + ND
Sbjct: 92 RIPPHAALAETVEGATVLKRPQLKGLINGVLRQF---QRQQVELLERAVNND-------- 140
Query: 225 TIYSHPVWMVRRWTK-YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKL 283
+ Y HP W++ R + Y Q + I + NN P LR N R +R++ + L +
Sbjct: 141 SHYLHPSWLLARIKQAYPAQWQQI--LDANNQRPPMWLRVN-RLHHSRSEYLELLTQADI 197
Query: 284 QV-PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 342
PH + + +R+ T V + G VQD SA V ++DPQ G+ I+D
Sbjct: 198 NAEPHPI---YRDAVRLITPC-AVNHLPGFELGWVTVQDASAQGCVDLLDPQNGEQILDL 253
Query: 343 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR---TF 399
CAAPGGKT ++ + + V A+DI++ RL + E + Q+ +V+R D R T+
Sbjct: 254 CAAPGGKTTHILEA-APKAHVLAVDIDEQRLSRVKENLQRLQLQAVVRV--GDGRAPDTW 310
Query: 400 ADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGG 459
+ + D++LLDAPCS GV+ + D++W RR D+ EL LQ E+++A +K GG
Sbjct: 311 CGDQ--QFDRILLDAPCSATGVIRRHPDIKWLRRDRDISELAQLQSEIIEAIWPKLKHGG 368
Query: 460 VLVYSTCSIDPEENEERVEAFLLRHPEFSI-DPADGLVPSDFVTKH-----GFFFSDPIK 513
VLVY+TCSI PEEN++++ AFL RHPE + + P H GFF++ IK
Sbjct: 369 VLVYATCSILPEENQQQIAAFLQRHPEAQLTETGTTAAPGKQNLPHPEDGDGFFYAKIIK 428
>sp|Q1CCX4|RSMB_YERPN Ribosomal RNA small subunit methyltransferase B OS=Yersinia pestis
bv. Antiqua (strain Nepal516) GN=rsmB PE=3 SV=1
Length = 429
Score = 177 bits (450), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 135/420 (32%), Positives = 216/420 (51%), Gaps = 36/420 (8%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
K++ D+D L+ ++ GT+R L+ I L + + + + ++ +G Y+++
Sbjct: 34 KNISDKDRALLQELCFGTLRVLPQLEWCIQQLM--ARPMTGKQRVFHYLIMVGLYQLIYT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+PP+A + E V A V RP L+NG+LR+ + L + ND
Sbjct: 92 RIPPHAALAETVEGATVLKRPQLKGLINGVLRQF---QRQQVELLERAVNND-------- 140
Query: 225 TIYSHPVWMVRRWTK-YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKL 283
+ Y HP W++ R + Y Q + I + NN P LR N R +R++ + L +
Sbjct: 141 SHYLHPSWLLARIKQAYPAQWQQI--LDANNQRPPMWLRVN-RLHHSRSEYLELLTQADI 197
Query: 284 QV-PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 342
PH + + +R+ T V + G VQD SA V ++DPQ G+ I+D
Sbjct: 198 NAEPHPI---YRDAVRLITPC-AVNHLPGFELGWVTVQDASAQGCVDLLDPQNGEQILDL 253
Query: 343 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR---TF 399
CAAPGGKT ++ + + V A+DI++ RL + E + Q+ +V+R D R T+
Sbjct: 254 CAAPGGKTTHILEA-APKAHVLAVDIDEQRLSRVKENLQRLQLQAVVRV--GDGRAPDTW 310
Query: 400 ADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGG 459
+ + D++LLDAPCS GV+ + D++W RR D+ EL LQ E+++A +K GG
Sbjct: 311 CGDQ--QFDRILLDAPCSATGVIRRHPDIKWLRRDRDISELAQLQSEIIEAIWPKLKHGG 368
Query: 460 VLVYSTCSIDPEENEERVEAFLLRHPEFSI-DPADGLVPSDFVTKH-----GFFFSDPIK 513
VLVY+TCSI PEEN++++ AFL RHPE + + P H GFF++ IK
Sbjct: 369 VLVYATCSILPEENQQQIAAFLQRHPEAQLTETGTTAAPGKQNLPHPEDGDGFFYAKIIK 428
>sp|Q8ZJ81|RSMB_YERPE Ribosomal RNA small subunit methyltransferase B OS=Yersinia pestis
GN=rsmB PE=3 SV=1
Length = 429
Score = 177 bits (450), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 135/420 (32%), Positives = 216/420 (51%), Gaps = 36/420 (8%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
K++ D+D L+ ++ GT+R L+ I L + + + + ++ +G Y+++
Sbjct: 34 KNISDKDRALLQELCFGTLRVLPQLEWCIQQLM--ARPMTGKQRVFHYLIMVGLYQLIYT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+PP+A + E V A V RP L+NG+LR+ + L + ND
Sbjct: 92 RIPPHAALAETVEGATVLKRPQLKGLINGVLRQF---QRQQVELLERAVNND-------- 140
Query: 225 TIYSHPVWMVRRWTK-YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKL 283
+ Y HP W++ R + Y Q + I + NN P LR N R +R++ + L +
Sbjct: 141 SHYLHPSWLLARIKQAYPAQWQQI--LDANNQRPPMWLRVN-RLHHSRSEYLELLTQADI 197
Query: 284 QV-PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 342
PH + + +R+ T V + G VQD SA V ++DPQ G+ I+D
Sbjct: 198 NAEPHPI---YRDAVRLITPC-AVNHLPGFELGWVTVQDASAQGCVDLLDPQNGEQILDL 253
Query: 343 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR---TF 399
CAAPGGKT ++ + + V A+DI++ RL + E + Q+ +V+R D R T+
Sbjct: 254 CAAPGGKTTHILEA-APKAHVLAVDIDEQRLSRVKENLQRLQLQAVVRV--GDGRAPDTW 310
Query: 400 ADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGG 459
+ + D++LLDAPCS GV+ + D++W RR D+ EL LQ E+++A +K GG
Sbjct: 311 CGDQ--QFDRILLDAPCSATGVIRRHPDIKWLRRDRDISELAQLQSEIIEAIWPKLKHGG 368
Query: 460 VLVYSTCSIDPEENEERVEAFLLRHPEFSI-DPADGLVPSDFVTKH-----GFFFSDPIK 513
VLVY+TCSI PEEN++++ AFL RHPE + + P H GFF++ IK
Sbjct: 369 VLVYATCSILPEENQQQIAAFLQRHPEAQLTETGTTAAPGKQNLPHPEDGDGFFYAKIIK 428
>sp|B2K506|RSMB_YERPB Ribosomal RNA small subunit methyltransferase B OS=Yersinia
pseudotuberculosis serotype IB (strain PB1/+) GN=rsmB
PE=3 SV=1
Length = 429
Score = 177 bits (450), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 135/420 (32%), Positives = 216/420 (51%), Gaps = 36/420 (8%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
K++ D+D L+ ++ GT+R L+ I L + + + + ++ +G Y+++
Sbjct: 34 KNISDKDRALLQELCFGTLRVLPQLEWCIQQLM--ARPMTGKQRVFHYLIMVGLYQLIYT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+PP+A + E V A V RP L+NG+LR+ + L + ND
Sbjct: 92 RIPPHAALAETVEGATVLKRPQLKGLINGVLRQF---QRQQVELLERAVNND-------- 140
Query: 225 TIYSHPVWMVRRWTK-YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKL 283
+ Y HP W++ R + Y Q + I + NN P LR N R +R++ + L +
Sbjct: 141 SHYLHPSWLLARIKQAYPAQWQQI--LDANNQRPPMWLRVN-RLHHSRSEYLELLTQADI 197
Query: 284 QV-PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 342
PH + + +R+ T V + G VQD SA V ++DPQ G+ I+D
Sbjct: 198 NAEPHPI---YRDAVRLITPC-AVNHLPGFELGWVTVQDASAQGCVDLLDPQNGEQILDL 253
Query: 343 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR---TF 399
CAAPGGKT ++ + + V A+DI++ RL + E + Q+ +V+R D R T+
Sbjct: 254 CAAPGGKTTHILEA-APKAHVLAVDIDEQRLSRVKENLQRLQLQAVVRV--GDGRAPDTW 310
Query: 400 ADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGG 459
+ + D++LLDAPCS GV+ + D++W RR D+ EL LQ E+++A +K GG
Sbjct: 311 CGDQ--QFDRILLDAPCSATGVIRRHPDIKWLRRDRDISELAQLQSEIIEAIWPKLKHGG 368
Query: 460 VLVYSTCSIDPEENEERVEAFLLRHPEFSI-DPADGLVPSDFVTKH-----GFFFSDPIK 513
VLVY+TCSI PEEN++++ AFL RHPE + + P H GFF++ IK
Sbjct: 369 VLVYATCSILPEENQQQIAAFLQRHPEAQLTETGTTAAPGKQNLPHPEDGDGFFYAKIIK 428
>sp|Q1C2X7|RSMB_YERPA Ribosomal RNA small subunit methyltransferase B OS=Yersinia pestis
bv. Antiqua (strain Antiqua) GN=rsmB PE=3 SV=1
Length = 429
Score = 177 bits (450), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 135/420 (32%), Positives = 216/420 (51%), Gaps = 36/420 (8%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
K++ D+D L+ ++ GT+R L+ I L + + + + ++ +G Y+++
Sbjct: 34 KNISDKDRALLQELCFGTLRVLPQLEWCIQQLM--ARPMTGKQRVFHYLIMVGLYQLIYT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+PP+A + E V A V RP L+NG+LR+ + L + ND
Sbjct: 92 RIPPHAALAETVEGATVLKRPQLKGLINGVLRQF---QRQQVELLERAVNND-------- 140
Query: 225 TIYSHPVWMVRRWTK-YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKL 283
+ Y HP W++ R + Y Q + I + NN P LR N R +R++ + L +
Sbjct: 141 SHYLHPSWLLARIKQAYPAQWQQI--LDANNQRPPMWLRVN-RLHHSRSEYLELLTQADI 197
Query: 284 QV-PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 342
PH + + +R+ T V + G VQD SA V ++DPQ G+ I+D
Sbjct: 198 NAEPHPI---YRDAVRLITPC-AVNHLPGFELGWVTVQDASAQGCVDLLDPQNGEQILDL 253
Query: 343 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR---TF 399
CAAPGGKT ++ + + V A+DI++ RL + E + Q+ +V+R D R T+
Sbjct: 254 CAAPGGKTTHILEA-APKAHVLAVDIDEQRLSRVKENLQRLQLQAVVRV--GDGRAPDTW 310
Query: 400 ADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGG 459
+ + D++LLDAPCS GV+ + D++W RR D+ EL LQ E+++A +K GG
Sbjct: 311 CGDQ--QFDRILLDAPCSATGVIRRHPDIKWLRRDRDISELAQLQSEIIEAIWPKLKHGG 368
Query: 460 VLVYSTCSIDPEENEERVEAFLLRHPEFSI-DPADGLVPSDFVTKH-----GFFFSDPIK 513
VLVY+TCSI PEEN++++ AFL RHPE + + P H GFF++ IK
Sbjct: 369 VLVYATCSILPEENQQQIAAFLQRHPEAQLTETGTTAAPGKQNLPHPEDGDGFFYAKIIK 428
>sp|A7FNK4|RSMB_YERP3 Ribosomal RNA small subunit methyltransferase B OS=Yersinia
pseudotuberculosis serotype O:1b (strain IP 31758)
GN=rsmB PE=3 SV=1
Length = 429
Score = 177 bits (450), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 135/420 (32%), Positives = 216/420 (51%), Gaps = 36/420 (8%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
K++ D+D L+ ++ GT+R L+ I L + + + + ++ +G Y+++
Sbjct: 34 KNISDKDRALLQELCFGTLRVLPQLEWCIQQLM--ARPMTGKQRVFHYLIMVGLYQLIYT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+PP+A + E V A V RP L+NG+LR+ + L + ND
Sbjct: 92 RIPPHAALAETVEGATVLKRPQLKGLINGVLRQF---QRQQVELLERAVNND-------- 140
Query: 225 TIYSHPVWMVRRWTK-YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKL 283
+ Y HP W++ R + Y Q + I + NN P LR N R +R++ + L +
Sbjct: 141 SHYLHPSWLLARIKQAYPAQWQQI--LDANNQRPPMWLRVN-RLHHSRSEYLELLTQADI 197
Query: 284 QV-PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 342
PH + + +R+ T V + G VQD SA V ++DPQ G+ I+D
Sbjct: 198 NAEPHPI---YRDAVRLITPC-AVNHLPGFELGWVTVQDASAQGCVDLLDPQNGEQILDL 253
Query: 343 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR---TF 399
CAAPGGKT ++ + + V A+DI++ RL + E + Q+ +V+R D R T+
Sbjct: 254 CAAPGGKTTHILEA-APKAHVLAVDIDEQRLSRVKENLQRLQLQAVVRV--GDGRAPDTW 310
Query: 400 ADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGG 459
+ + D++LLDAPCS GV+ + D++W RR D+ EL LQ E+++A +K GG
Sbjct: 311 CGDQ--QFDRILLDAPCSATGVIRRHPDIKWLRRDRDISELAQLQSEIIEAIWPKLKHGG 368
Query: 460 VLVYSTCSIDPEENEERVEAFLLRHPEFSI-DPADGLVPSDFVTKH-----GFFFSDPIK 513
VLVY+TCSI PEEN++++ AFL RHPE + + P H GFF++ IK
Sbjct: 369 VLVYATCSILPEENQQQIAAFLQRHPEAQLTETGTTAAPGKQNLPHPEDGDGFFYAKIIK 428
>sp|A8GKG7|RSMB_SERP5 Ribosomal RNA small subunit methyltransferase B OS=Serratia
proteamaculans (strain 568) GN=rsmB PE=3 SV=1
Length = 429
Score = 169 bits (429), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 133/417 (31%), Positives = 209/417 (50%), Gaps = 30/417 (7%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
K + D+D L+ ++ GT+R L+ I L K + + L +L +G Y+++
Sbjct: 34 KTISDKDRALLQELCFGTLRVLPQLEWCIQQLM--AKPMTGKQRTLHYLLMVGLYQLLYT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P +AV+ E V A RP L+NG+LR+ + L + ND
Sbjct: 92 RIPAHAVLAETVEGAVALKRPQLKGLINGVLRQF---QRQQEELLQRAANND-------- 140
Query: 225 TIYSHPVWMVRRWTK-YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKL 283
+ Y HP W+++R + Y Q E I + NN P LR N R TR D + + +
Sbjct: 141 SRYLHPSWLLKRIQQAYPAQWEQI--IDANNQKPPMWLRVN-RLHHTREDYLQLME--QA 195
Query: 284 QVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCC 343
+ E + +R+ G +G VQD SA V ++DPQ G+ I+D C
Sbjct: 196 GIAAEPHAEYRDAVRLLAPCAVTDLPGF-ADGWVTVQDASAQGCVDLLDPQDGEQILDLC 254
Query: 344 AAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS 403
AAPGGKT ++ + + V A+DI++ RL+ + E + ++++ ++ D RT
Sbjct: 255 AAPGGKTTHILEA-APKAHVMAVDIDEQRLKRVKENLQRLRLHAEVK--QGDGRTPQQWC 311
Query: 404 TVK-CDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLV 462
K D++LLDAPCS GV+ + D++W RR D+ EL LQ E+++A +K GGV+V
Sbjct: 312 GDKQFDRILLDAPCSATGVIRRHPDIKWLRRDSDIAELAALQAEIIEAIWPHLKSGGVMV 371
Query: 463 YSTCSIDPEENEERVEAFLLRHPEFS-IDPADGLVPSDFVTKH-----GFFFSDPIK 513
Y+TCSI P EN E+V AFL RH + ++ + P H GFF++ IK
Sbjct: 372 YATCSILPAENAEQVSAFLQRHADARLVETGNQQQPGRQNLPHPEDGDGFFYAKLIK 428
>sp|A1JRZ3|RSMB_YERE8 Ribosomal RNA small subunit methyltransferase B OS=Yersinia
enterocolitica serotype O:8 / biotype 1B (strain 8081)
GN=rsmB PE=3 SV=1
Length = 429
Score = 168 bits (425), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 132/425 (31%), Positives = 218/425 (51%), Gaps = 33/425 (7%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
K + D+D L+ ++ GT+R L+ I L + + + + ++ +G Y+++
Sbjct: 34 KSISDKDRALLQELCFGTLRVLPQLEWCIQQLM--ARPMTGKQRVFHYLIMVGLYQLIYT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+PP+A + E V A RP L+NG+LR+ + L + ND
Sbjct: 92 RIPPHAALAETVEGATALKRPQLKGLINGVLRQF---QRQQVELLERAANND-------- 140
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRAN--SRKGVTRADLVMQLNLLK 282
+ Y HP W++ R K ++ +++ NN P LR N + +L+ Q N+
Sbjct: 141 SHYLHPSWLLAR-IKLAYPDQWQQILDANNQKPPMWLRVNRLHHSRIEYLELLKQANIEA 199
Query: 283 LQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 342
L PH+ + +R+ T G + G VQD SA V ++DPQ G+ I+D
Sbjct: 200 L--PHDF---YPDAVRLITPCAVSDLPGF-ELGWVTVQDASAQGCVDLLDPQDGEQILDL 253
Query: 343 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD- 401
CAAPGGKT ++ + + V A+DI++ RL + E + ++++ +R D RT +
Sbjct: 254 CAAPGGKTTHILEA-APKVHVLAVDIDEQRLSRVKENLQRLRLHADVRV--GDGRTPDEW 310
Query: 402 NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVL 461
+ D++LLDAPCS GV+ + D++W RR D+ EL LQ E+++A +K GGV+
Sbjct: 311 CGDQQFDRILLDAPCSATGVIRRHPDIKWLRRDSDIAELAQLQSEIIEAIWPKLKKGGVM 370
Query: 462 VYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFA 521
VY+TCSI PEEN++++ FL RH E AD LV + V+ G + P DG +
Sbjct: 371 VYATCSILPEENQQQIATFLQRHSE-----AD-LVETGTVSALG-RQNLPHPEDGDGFYY 423
Query: 522 ARLVR 526
A+L++
Sbjct: 424 AKLIK 428
>sp|A8AQI3|RSMB_CITK8 Ribosomal RNA small subunit methyltransferase B OS=Citrobacter
koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696)
GN=rsmB PE=3 SV=1
Length = 428
Score = 167 bits (422), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 133/417 (31%), Positives = 212/417 (50%), Gaps = 30/417 (7%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
+ + D+D L+ ++ G +R L+ LI L + + + + ++ +GFY+++
Sbjct: 33 QKVSDKDKALLQELCFGVLRTLSQLEWLINKLM--SRPMTGKQRTVHYLIMVGFYQLLHT 90
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+PP+A + E V A RP L+NG+LR+ + +L L ++AR L
Sbjct: 91 RIPPHAALAETVEGAVAIKRPQLKGLINGVLRQFQ--RQQEAL----LAEFATSEARFL- 143
Query: 225 TIYSHPVWMVRRWTK-YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKL 283
HP W+++R K Y Q EAI + NN P LR N + L + +
Sbjct: 144 ----HPSWLLKRLQKSYPTQWEAI--VEANNQRPPMWLRVNRTHHSRDSWLTLLQDAGMN 197
Query: 284 QVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCC 343
PH S + D +R+++ G +EG VQD SA V+ + PQ G+ I+D C
Sbjct: 198 GFPH--SAYPDA-LRLESPAPVHALPGF-EEGWVTVQDASAQGCVSFLAPQNGEKILDLC 253
Query: 344 AAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-N 402
AAPGGKT ++ + + V A+D+++ RL + + K + + ++ D R A
Sbjct: 254 AAPGGKTTHILEA-APEAQVLAVDVDEQRLSRVYDNLKRLGMKATVK--QGDGRYPAQWC 310
Query: 403 STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLV 462
K D++LLDAPCS GV+ + D++W RR D+ EL LQ E+LDA +K GG LV
Sbjct: 311 GEQKFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAKLQSEILDAIWPHLKSGGTLV 370
Query: 463 YSTCSIDPEENEERVEAFLLRHPEFSI----DPADGLVPS--DFVTKHGFFFSDPIK 513
Y+TCS+ PEEN +++ AFL R P+ ++ PA V + GFF++ IK
Sbjct: 371 YATCSVLPEENSQQILAFLQRTPDATLTGTGTPAQPGVQNLPGAEEGDGFFYAKLIK 427
>sp|Q6D000|RSMB_ERWCT Ribosomal RNA small subunit methyltransferase B OS=Erwinia
carotovora subsp. atroseptica (strain SCRI 1043 / ATCC
BAA-672) GN=rsmB PE=3 SV=1
Length = 429
Score = 166 bits (421), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 128/423 (30%), Positives = 206/423 (48%), Gaps = 32/423 (7%)
Query: 100 LGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFY 159
L +D+ D+D L+ ++ G +R L+ I L K + + L ++ +G Y
Sbjct: 29 LPIHQRDVSDKDRALLQELCFGVLRVLPQLEWCIQQLM--AKPLTGKQRTLHYLIMVGIY 86
Query: 160 EIVKLDMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQ 219
++ +PP+A + E V A RP L+NG+LR+ ++ L + E +
Sbjct: 87 QLHYTRIPPHAALAETVEGAVALKRPQLKGLINGVLRQFQRQQEE----LLQREATHSSH 142
Query: 220 ARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRA--DLVMQ 277
Y HP W++ R ++ ++ NN P LR N A +L+MQ
Sbjct: 143 -------YLHPSWLLAR-IEHAYPNNWRGIVEANNQRPPMWLRVNRLHHTREAYLNLLMQ 194
Query: 278 LNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQ 337
+ PH + IR+ + V Q +G VQD SA V +DPQ G+
Sbjct: 195 GGIEAF--PHT---EYSDAIRLASPC-AVDQLPGFSQGWATVQDASAQGCVYWLDPQDGE 248
Query: 338 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR 397
I+D CAAPGGKT ++ + + V A+D+++ RL + E Q+++ ++ D R
Sbjct: 249 QILDLCAAPGGKTTHILEA-APKSHVLAVDVDETRLGRVKENLLRLQMHAEVK--QGDGR 305
Query: 398 TFADNSTVKC-DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVK 456
+ D++LLDAPCS GV+ + D++W RR D+EEL LQ E+LDA +K
Sbjct: 306 YPDSWCEARVFDRILLDAPCSATGVIRRHPDIKWLRRDRDIEELVALQKEILDAIWPHLK 365
Query: 457 PGGVLVYSTCSIDPEENEERVEAFLLRHPEFS-IDPADGLVPSDFVTKH-----GFFFSD 510
GG +VY+TCSI P+EN ++V FL RH + + +D +P + H GFF++
Sbjct: 366 TGGTMVYATCSILPQENTQQVTGFLSRHADAALVDTGTSEIPGIQILPHADSGDGFFYAK 425
Query: 511 PIK 513
+K
Sbjct: 426 LVK 428
>sp|A7MPE7|RSMB_CROS8 Ribosomal RNA small subunit methyltransferase B OS=Cronobacter
sakazakii (strain ATCC BAA-894) GN=rsmB PE=3 SV=1
Length = 429
Score = 166 bits (420), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 127/418 (30%), Positives = 209/418 (50%), Gaps = 36/418 (8%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDM 166
+ D+D L+ ++ G +R L+ LI L + + + + ++ +G Y+++ +
Sbjct: 36 VSDKDKALLQELCFGVLRTLSQLEWLINKLM--SRPMTGKQRTIHYLIMVGLYQLLYTRI 93
Query: 167 PPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATI 226
PP+A + E V A R L+NG+LR+ +D L + G D AR L
Sbjct: 94 PPHAALAETVEGAVAIKRMQFKGLINGVLRQFQRQQDEL---LAEFSGQD---ARWL--- 144
Query: 227 YSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVP 286
HP+W++ R+ +E + NN P LR N R+ +R + LKL
Sbjct: 145 --HPMWLLNRFQTAWPREWQAVVEA-NNERPPMWLRVN-RQHHSRDEW------LKLLEE 194
Query: 287 HELSLHLD----EFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 342
+ ++ H+ + +R+ G ++G VQD SA V ++ PQ G++I+D
Sbjct: 195 NGMTGHIHPRYPDAVRLDAPAPVSALPGF-EQGWVTVQDASAQGCVELLAPQNGETILDL 253
Query: 343 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN 402
CAAPGGKT ++ + Q V A+D++ R+ + E K ++ + ++ +
Sbjct: 254 CAAPGGKTTHILEA-APQASVMAVDVDAQRISRVYENLKRLKMKADVKVGDGRFPSTWCG 312
Query: 403 STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLV 462
T + D++LLDAPCS GV+ + D++W RR D+ EL LQ E+LDA +KPGG L+
Sbjct: 313 ET-QFDRILLDAPCSATGVIRRHPDIKWLRRDSDINELAQLQSEILDAIWPHLKPGGTLL 371
Query: 463 YSTCSIDPEENEERVEAFLLRHPEFSID-------PADGLVPSDFVTKHGFFFSDPIK 513
Y+TCS+ PEEN E++ AFL R P+ +D P +P GFF++ IK
Sbjct: 372 YATCSVLPEENSEQIRAFLSRTPDAQLDGTGSTQTPGIQNLPGA-TEGDGFFYAKLIK 428
>sp|B4F1L5|RSMB_PROMH Ribosomal RNA small subunit methyltransferase B OS=Proteus
mirabilis (strain HI4320) GN=rsmB PE=3 SV=1
Length = 422
Score = 166 bits (420), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 121/406 (29%), Positives = 204/406 (50%), Gaps = 23/406 (5%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
K++ D+D L+ ++ GT+R L+ +I L +K + +L ++ +G Y+++
Sbjct: 34 KNISDKDKALLQELCFGTLRTLPQLEWIIQQLM--DKPLKGKQRILHYLIMVGLYQLLYT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P +A + E V A +P L+NG+LR+ +D + + + + ND
Sbjct: 92 RVPAHAALAETVNGAIALKKPQLKGLINGVLRQFQRQQD---VLMERFQNND-------- 140
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQ 284
+ Y HP W++ R K E ++ NN P LR N L + L K
Sbjct: 141 SRYLHPSWLLTR-IKNAYPELWESIIEGNNQKPPMWLRVNQIHHSREQYLAL---LEKEG 196
Query: 285 VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 344
+ H IR++T + G EG VQD SA ++ PQ + I+D CA
Sbjct: 197 ISAFSDDHHPNAIRLETPCNVHLLPGF-NEGWVTVQDRSAQRCAELLAPQNNEQILDLCA 255
Query: 345 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-NS 403
APGGKT ++ ++ + V AIDI++ RL + E ++++ +++ D R +
Sbjct: 256 APGGKTTHILE-IAPKAHVLAIDIDEQRLARVKENLNRLKLHATVKS--GDGRYPEQWCA 312
Query: 404 TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463
++ D++LLDAPCS GV+ + D++W RR ED+ +L +Q E+L A +K GG LVY
Sbjct: 313 NMQFDRILLDAPCSATGVIRRHPDIKWLRRNEDIAQLAQIQKEILHAIWPYLKSGGTLVY 372
Query: 464 STCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFS 509
+TCSI PEEN +++ AFL + D +P + + GFF++
Sbjct: 373 ATCSILPEENSQQIAAFLSSMQDAQCDYQHQCLPEQY-SGDGFFYA 417
>sp|A6TEU2|RSMB_KLEP7 Ribosomal RNA small subunit methyltransferase B OS=Klebsiella
pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH
78578) GN=rsmB PE=3 SV=1
Length = 431
Score = 165 bits (417), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 129/419 (30%), Positives = 207/419 (49%), Gaps = 34/419 (8%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
+ + D+D L+ ++ G +R L+ LI L + + + + ++ +G Y+++
Sbjct: 34 QKVSDKDKALLQELCFGVLRTLSQLEWLISKLM--ARPMTGKQRTVHFLIMVGLYQLLYT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+PP+A + E V A RP L+NG+LR+ + +L E +R
Sbjct: 92 RIPPHAALAETVEGAVAIKRPQLKGLINGVLRQFQ--RQQEALLAEFAEHENR------- 142
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQ 284
Y HP W+++R + E+ +++ NN P LR N R +R + + LN L
Sbjct: 143 --YLHPKWLLKR-LQQAWPEQWQEIVEANNQRPPMWLRVN-RNHHSRDEWLALLNEAGL- 197
Query: 285 VPHELSLHLDEFIRVKTGLQNVIQA-GLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCC 343
E H D V+ + A EG VQD SA + + P+ G+ I+D C
Sbjct: 198 ---EGFTHPDYPDAVRLATPAPVHALPGFAEGWVTVQDASAQGCMRYLQPENGERILDLC 254
Query: 344 AAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN- 402
AAPGGKT ++ ++ Q V A+DI++ RL + + K V + ++ D R F +
Sbjct: 255 AAPGGKTTHILE-VAPQAQVMAVDIDEQRLSRVYDNLKRLGVKAEVK--QGDGR-FPEQW 310
Query: 403 -STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVL 461
+ D++LLDAPCS GV+ + D++W RR D+ EL LQ E+L+A +KPGG L
Sbjct: 311 CGNEQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQAEILNAIWGHLKPGGTL 370
Query: 462 VYSTCSIDPEENEERVEAFLLRHPEFSI-------DPADGLVPSDFVTKHGFFFSDPIK 513
VY+TCSI PEEN +++ AFL R P+ + P +P GFF++ IK
Sbjct: 371 VYATCSILPEENSQQIAAFLARTPDAELHATGTPASPGQQNLPG-VEEGDGFFYAKLIK 428
>sp|A4WF97|RSMB_ENT38 Ribosomal RNA small subunit methyltransferase B OS=Enterobacter sp.
(strain 638) GN=rsmB PE=3 SV=1
Length = 428
Score = 163 bits (413), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 119/393 (30%), Positives = 194/393 (49%), Gaps = 48/393 (12%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
+ + D+D L+ ++ G +R + LI L + + + + ++ +GFY+++
Sbjct: 33 QKVSDKDKALLQELCFGVLRTLPQQEWLISKLM--SRPMTGKQRTIHYLIMVGFYQLLHT 90
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+PP+A + E V A V RP L+NG+LR+ R Q LA
Sbjct: 91 RIPPHAALAETVEGAVVIKRPQLKGLINGVLRQF-----------------QRQQEELLA 133
Query: 225 TI------YSHPVWMVRRWTK-YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQ 277
+ HP W+++R K Y + EAI + NN P LR N R TR + +
Sbjct: 134 EFADSDKRFLHPEWLLKRLQKAYPSKWEAI--VEANNQRPPMWLRVN-RNHHTRDEWLAL 190
Query: 278 LNLLKLQ------VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVV 331
L ++ P + L ++ G + +G VQD SA + +
Sbjct: 191 LETAEMNGFTHDAYPDAIRLASPAPVQALPGFE---------QGWVTVQDASAQGCMTYL 241
Query: 332 DPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRT 391
+PQ G I+D CAAPGGKT ++ ++ + V A+D+++ RL + + K + + ++
Sbjct: 242 EPQNGDHILDLCAAPGGKTTHILE-IAPKASVMAVDVDEQRLSRVYDNLKRLGMKAEVK- 299
Query: 392 IHADLRTFAD-NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDA 450
D RT + + D++L+DAPCS GV+ + D++W RR D+ EL LQ E+LDA
Sbjct: 300 -QGDGRTPGEWCGDEQFDRILVDAPCSATGVIRRHPDIKWLRRDRDINELAQLQSEILDA 358
Query: 451 ASLLVKPGGVLVYSTCSIDPEENEERVEAFLLR 483
+KPGG LVY+TCS+ PEEN +++ AFL R
Sbjct: 359 VWPHLKPGGTLVYATCSVLPEENSQQIAAFLKR 391
>sp|A9MN78|RSMB_SALAR Ribosomal RNA small subunit methyltransferase B OS=Salmonella
arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980)
GN=rsmB PE=3 SV=1
Length = 429
Score = 163 bits (412), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 134/415 (32%), Positives = 207/415 (49%), Gaps = 34/415 (8%)
Query: 109 DRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPP 168
D+D L+ ++ G +R L+ LI L + + + + ++ +GFY+++ +PP
Sbjct: 38 DKDKALLQELCFGVLRTLSQLEWLINKLM--SRPMTGKQRTVHYLIMVGFYQLLYTRVPP 95
Query: 169 YAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYS 228
+A + E V A RP L+NG+LR+ + +L L + +D AR L
Sbjct: 96 HAALAETVEGAVSIKRPQLKGLINGVLRQFQ--RQQETL-LNEFATSD---ARFL----- 144
Query: 229 HPVWMVRR-WTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQ-VP 286
HP W+V+R Y Q + I + NN P LR N R TR + L ++ P
Sbjct: 145 HPGWLVKRLQNAYPTQWQHI--IEANNQRPPMWLRVN-RTHHTRDGWLGLLEDAGMKGYP 201
Query: 287 HELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAP 346
H + +R++T G EG VQD SA VA + PQ G+ I+D CAAP
Sbjct: 202 HP---DYPDAVRLETPAPVHALPGF-AEGWVTVQDASAQKCVAFLAPQNGEHILDLCAAP 257
Query: 347 GGKTLYMASCLSGQGLVYAIDINKGRL-RILNETAKLHQVNSVIRTIHADLRTFADNSTV 405
GGKT ++ + + V A+D+++ RL RI + +L +V + + D
Sbjct: 258 GGKTTHILEA-APEADVLAVDVDEQRLSRIYDNLKRLGMKATVKQGDGRYPAQWCDEQ-- 314
Query: 406 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465
+ D++LLDAPCS GV+ + D++W RR D+ EL LQ E+LD +KPGG LVY+T
Sbjct: 315 QFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAKLQAEILDTVWPRLKPGGTLVYAT 374
Query: 466 CSIDPEENEERVEAFLLRHPEFSI-------DPADGLVPSDFVTKHGFFFSDPIK 513
CS+ PEEN ++ AFL R P+ ++ P +P GFF++ IK
Sbjct: 375 CSVLPEENSAQINAFLQRTPDAALSETGTPDQPGQQNLPG-AEEGDGFFYAKLIK 428
>sp|C6DFR7|RSMB_PECCP Ribosomal RNA small subunit methyltransferase B OS=Pectobacterium
carotovorum subsp. carotovorum (strain PC1) GN=rsmB PE=3
SV=1
Length = 429
Score = 163 bits (412), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 130/426 (30%), Positives = 207/426 (48%), Gaps = 38/426 (8%)
Query: 100 LGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFY 159
L +++ ++D L+ ++ G +R L+ I L K + + L ++ +G Y
Sbjct: 29 LPVHQREVSEKDRALLQELCFGVLRVLPQLEWCIQQLM--AKPLTGKQRTLHYLIMVGIY 86
Query: 160 EIVKLDMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQ 219
++ +PP+A + E V A RP L+NG+LR+ ++ L + E N +
Sbjct: 87 QLHYTRIPPHAALAETVEGAVALKRPQLKGLINGVLRQFQRQQEE----LIQREANHSSH 142
Query: 220 ARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLN 279
Y HP W++ R ++ ++ NN P LR N A LN
Sbjct: 143 -------YLHPSWLLAR-IEHAYPNHWQTIVEANNQRPPMWLRVNRLHHTREA----YLN 190
Query: 280 LLKLQ----VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQP 335
LL + PH + IR+ + V Q +G VQD SA V +DPQ
Sbjct: 191 LLAQEGIEAFPHT---EFTDAIRLASPC-AVDQLPGFSQGWATVQDASAQGCVYWLDPQD 246
Query: 336 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHAD 395
G+ I+D CAAPGGKT ++ + Q V A+DI++ RL + E Q+++ ++ D
Sbjct: 247 GEQILDLCAAPGGKTTHILEA-APQSHVLAVDIDETRLGRVKENLLRLQMHAEVK--QGD 303
Query: 396 LRTFADN--STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASL 453
R + D+ D++LLDAPCS GV+ + D++W RR D+EEL LQ E+ DA
Sbjct: 304 GR-YPDSWCEGRMFDRILLDAPCSATGVIRRHPDIKWLRRDRDIEELVALQKEIFDAIWP 362
Query: 454 LVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFS-IDPADGLVPSDFVTKH-----GFF 507
+K GG +VY+TCSI P+EN ++V FL RH + + +D +P + H GFF
Sbjct: 363 HLKVGGTMVYATCSILPQENAQQVTDFLTRHADATLVDTGTRELPGIQMLPHADGGDGFF 422
Query: 508 FSDPIK 513
++ +K
Sbjct: 423 YAKLVK 428
>sp|Q8Z1X1|RSMB_SALTI Ribosomal RNA small subunit methyltransferase B OS=Salmonella typhi
GN=rsmB PE=3 SV=1
Length = 429
Score = 162 bits (411), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 132/415 (31%), Positives = 210/415 (50%), Gaps = 34/415 (8%)
Query: 109 DRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPP 168
D+D L+ ++ G +R L+ LI L + + + + ++ +GFY+++ +PP
Sbjct: 38 DKDKALLQELCFGVLRTLSQLEWLINKLM--SRPMTGKQRTVHYLIMVGFYQLLYTRVPP 95
Query: 169 YAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYS 228
+A + E V A RP L+NG+LR+ + +L L + +D AR L
Sbjct: 96 HAALAETVEGAVSIKRPQLKGLINGVLRQFQ--RQQETL-LNEFATSD---ARFL----- 144
Query: 229 HPVWMVRR-WTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQ-VP 286
HP W+V+R Y Q + +++ NN P LR N R TR + L ++ P
Sbjct: 145 HPGWLVKRLQNAYPTQWQ--RIIEANNQRPPMWLRVN-RTHHTRDGWLGLLEDAGMKGYP 201
Query: 287 HELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAP 346
H + +R++T G EG VQD SA + PQ G+ I+D CAAP
Sbjct: 202 HP---DYPDAVRLETPAPVHALPGF-AEGWVTVQDASAQGCAVFLAPQNGEHILDLCAAP 257
Query: 347 GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-NSTV 405
GGKT ++ ++ + V A+DI++ RL + + K + + ++ D R A
Sbjct: 258 GGKTTHILE-VAPEADVLAVDIDEQRLSRVYDNLKRLGMKATVK--QGDGRYPAQWCGEQ 314
Query: 406 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465
+ D++LLDAPCS GV+ + D++W RR D+ EL LQ E+LDA +KPGG LVY+T
Sbjct: 315 QFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQAEILDAVWPRLKPGGTLVYAT 374
Query: 466 CSIDPEENEERVEAFLLRHPEFSI-------DPADGLVPSDFVTKHGFFFSDPIK 513
CS+ PEEN ++++AFL R P+ ++ P +P GFF++ IK
Sbjct: 375 CSVLPEENRDQIKAFLQRTPDAALSETGTPDQPGQQNLPGG-EEGDGFFYAKLIK 428
>sp|B4SUR0|RSMB_SALNS Ribosomal RNA small subunit methyltransferase B OS=Salmonella
newport (strain SL254) GN=rsmB PE=3 SV=1
Length = 429
Score = 162 bits (409), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 132/415 (31%), Positives = 209/415 (50%), Gaps = 34/415 (8%)
Query: 109 DRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPP 168
D+D L+ ++ G +R L+ LI L + + + + ++ +GFY+++ +PP
Sbjct: 38 DKDKALLQELCFGVLRTLSQLEWLINKLM--SRPMTGKQRTVHYLIMVGFYQLLYTRVPP 95
Query: 169 YAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYS 228
+A + E V A RP L+NG+LR+ + +L L + +D AR L
Sbjct: 96 HAALAETVEGAVAIKRPQLKGLINGVLRQFQ--RQQETL-LNEFATSD---ARFL----- 144
Query: 229 HPVWMVRR-WTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQ-VP 286
HP W+V+R Y Q + I + NN P LR N R TR + L ++ P
Sbjct: 145 HPGWLVKRLQNAYPTQWQHI--IEANNQRPPMWLRVN-RTHHTRDGWLGLLEDAGMKGYP 201
Query: 287 HELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAP 346
H + +R++T G EG VQD SA + PQ G+ I+D CAAP
Sbjct: 202 HP---DYPDAVRLETPAPVHALPGF-AEGWVTVQDASAQGCAVFLAPQNGEHILDLCAAP 257
Query: 347 GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-NSTV 405
GGKT ++ ++ + V A+DI++ RL + + K + + ++ D R +
Sbjct: 258 GGKTTHILE-VAPEADVLAVDIDEQRLSRVYDNLKRLGMKATVK--QGDGRYPSQWCGEQ 314
Query: 406 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465
+ D++LLDAPCS GV+ + D++W RR D+ EL LQ E+LDA +KPGG LVY+T
Sbjct: 315 QFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQAEILDAVWPRLKPGGTLVYAT 374
Query: 466 CSIDPEENEERVEAFLLRHPEFSI-------DPADGLVPSDFVTKHGFFFSDPIK 513
CS+ PEEN ++++AFL R P+ ++ P +P GFF++ IK
Sbjct: 375 CSVLPEENRDQIKAFLQRTPDAALSETGTPDQPGQQNLPGG-EEGDGFFYAKLIK 428
>sp|B5RH47|RSMB_SALG2 Ribosomal RNA small subunit methyltransferase B OS=Salmonella
gallinarum (strain 287/91 / NCTC 13346) GN=rsmB PE=3
SV=1
Length = 429
Score = 161 bits (408), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 132/415 (31%), Positives = 208/415 (50%), Gaps = 34/415 (8%)
Query: 109 DRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPP 168
D+D L+ ++ G +R L+ LI L + + + + ++ +GFY+++ +PP
Sbjct: 38 DKDKALLQELCFGVLRTLSQLEWLINKLM--SRPMTGKQRTVHYLIMVGFYQLLYTRVPP 95
Query: 169 YAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYS 228
+A + E V A RP L+NG+LR+ + +L L + +D AR L
Sbjct: 96 HAALAETVEGAVAIKRPQLKGLINGVLRQFQ--RQQETL-LNEFATSD---ARFL----- 144
Query: 229 HPVWMVRRWTK-YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQ-VP 286
HP W+V+R Y Q + I + NN P LR N R TR + L ++ P
Sbjct: 145 HPGWLVKRLQNAYPTQWQHI--IEANNQRPPMWLRVN-RTHHTRDGWLGLLEDAGMKGYP 201
Query: 287 HELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAP 346
H + +R++T G EG VQD SA + PQ G+ I+D CAAP
Sbjct: 202 HP---DYPDAVRLETPAPVHALPGF-AEGWVTVQDASAQGCAVFLAPQNGEHILDLCAAP 257
Query: 347 GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-NSTV 405
GGKT ++ ++ + V A+DI++ RL + + K + + ++ D R A
Sbjct: 258 GGKTTHILE-VAPEADVLAVDIDEQRLSRVYDNLKRLGMKATVK--QGDGRYPAQWCGEQ 314
Query: 406 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465
+ D++LLDAPCS GV+ + D++W RR D+ EL LQ E+LDA +KPGG LVY+T
Sbjct: 315 QFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQAEILDAVWPRLKPGGTLVYAT 374
Query: 466 CSIDPEENEERVEAFLLRHPEFSI-------DPADGLVPSDFVTKHGFFFSDPIK 513
CS+ PEEN ++++ FL R P+ ++ P +P GFF++ IK
Sbjct: 375 CSVLPEENRDQIKTFLQRTPDAALSETGTPDQPGQQNLPGG-EEGDGFFYAKLIK 428
>sp|B5R1E5|RSMB_SALEP Ribosomal RNA small subunit methyltransferase B OS=Salmonella
enteritidis PT4 (strain P125109) GN=rsmB PE=3 SV=1
Length = 429
Score = 161 bits (408), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 132/415 (31%), Positives = 208/415 (50%), Gaps = 34/415 (8%)
Query: 109 DRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPP 168
D+D L+ ++ G +R L+ LI L + + + + ++ +GFY+++ +PP
Sbjct: 38 DKDKALLQELCFGVLRTLSQLEWLINKLM--SRPMTGKQRTVHYLIMVGFYQLLYTRVPP 95
Query: 169 YAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYS 228
+A + E V A RP L+NG+LR+ + +L L + +D AR L
Sbjct: 96 HAALAETVEGAVAIKRPQLKGLINGVLRQFQ--RQQETL-LNEFATSD---ARFL----- 144
Query: 229 HPVWMVRRWTK-YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQ-VP 286
HP W+V+R Y Q + I + NN P LR N R TR + L ++ P
Sbjct: 145 HPGWLVKRLQNAYPTQWQHI--IEANNQRPPMWLRVN-RTHHTRDGWLGLLEDAGMKGYP 201
Query: 287 HELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAP 346
H + +R++T G EG VQD SA + PQ G+ I+D CAAP
Sbjct: 202 HP---DYPDAVRLETPAPVHALPGF-AEGWVTVQDASAQGCAVFLAPQNGEHILDLCAAP 257
Query: 347 GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-NSTV 405
GGKT ++ ++ + V A+DI++ RL + + K + + ++ D R A
Sbjct: 258 GGKTTHILE-VAPEADVLAVDIDEQRLSRVYDNLKRLGMKATVK--QGDGRYPAQWCGEQ 314
Query: 406 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465
+ D++LLDAPCS GV+ + D++W RR D+ EL LQ E+LDA +KPGG LVY+T
Sbjct: 315 QFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQAEILDAVWPRLKPGGTLVYAT 374
Query: 466 CSIDPEENEERVEAFLLRHPEFSI-------DPADGLVPSDFVTKHGFFFSDPIK 513
CS+ PEEN ++++ FL R P+ ++ P +P GFF++ IK
Sbjct: 375 CSVLPEENRDQIKTFLQRTPDAALSETGTPDQPGQQNLPGG-EEGDGFFYAKLIK 428
>sp|B7LRQ5|RSMB_ESCF3 Ribosomal RNA small subunit methyltransferase B OS=Escherichia
fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73)
GN=rsmB PE=3 SV=1
Length = 429
Score = 161 bits (408), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 128/425 (30%), Positives = 209/425 (49%), Gaps = 46/425 (10%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
+ + D+D L+ ++ G +R LD LI L + + + + ++ +G Y+++
Sbjct: 34 QKVSDKDKALLQELCFGVLRTLSQLDWLINKLM--ARPMTGKQRTVHYLIMVGLYQLLYT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+PP+A + E V A RP L+NG+LR+ R Q LA
Sbjct: 92 RIPPHAALAETVEGAVAIKRPQLKGLINGVLRQF-----------------QRQQEELLA 134
Query: 225 TI------YSHPVWMVRRWTK-YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQ 277
Y HP W+++R K Y Q ++I + NN P LR N R +R +
Sbjct: 135 EFNASDARYLHPSWLLKRLQKAYPEQWQSI--IEANNQRPPMWLRVN-RTHHSRDSWLAL 191
Query: 278 LNLLKLQ-VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPG 336
L+ ++ PH + +R++T + G +EG VQD SA +A + PQ G
Sbjct: 192 LDEAGMKGFPHA---DYPDAVRLETPAPVHVLPGF-EEGWVTVQDASAQGCMAWLAPQNG 247
Query: 337 QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADL 396
+ I+D CAAPGGKT ++ ++ + V A+DI++ RL + + K + + ++ D
Sbjct: 248 EHILDLCAAPGGKTTHILE-VAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVK--QGDG 304
Query: 397 RTFAD-NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLV 455
R + + D++LLDAPCS GV+ + D++W RR D+ EL LQ E+LDA +
Sbjct: 305 RYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHL 364
Query: 456 KPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSI-------DPADGLVPSDFVTKHGFFF 508
K GG+L+Y+TCS+ PEEN +++AFL R + + P +P GFF+
Sbjct: 365 KSGGILIYATCSVLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNLPG-AEEGDGFFY 423
Query: 509 SDPIK 513
+ IK
Sbjct: 424 AKLIK 428
>sp|A9N8B3|RSMB_SALPB Ribosomal RNA small subunit methyltransferase B OS=Salmonella
paratyphi B (strain ATCC BAA-1250 / SPB7) GN=rsmB PE=3
SV=1
Length = 429
Score = 161 bits (407), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 131/415 (31%), Positives = 209/415 (50%), Gaps = 34/415 (8%)
Query: 109 DRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPP 168
D+D L+ ++ G +R L+ LI L + + + + ++ +GFY+++ +PP
Sbjct: 38 DKDKALLQELCFGVLRTLSQLEWLINKLM--SRPMTGKQRTVHYLIMVGFYQLLYTRVPP 95
Query: 169 YAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYS 228
+A + E V A RP L+NG+LR+ + +L L + +D AR L
Sbjct: 96 HAALAETVEGAVSIKRPQLKGLINGVLRQFQ--RQQETL-LNEFATSD---ARFL----- 144
Query: 229 HPVWMVRR-WTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQ-VP 286
HP W+V+R Y Q + +++ NN P LR N R TR + L ++ P
Sbjct: 145 HPGWLVKRLQNAYPTQWQ--RIIEANNQRPPMWLRVN-RTHHTRDGWLGLLEDAGMKGYP 201
Query: 287 HELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAP 346
H + +R++T G EG VQD SA + PQ G+ I+D CAAP
Sbjct: 202 HP---DYPDAVRLETPAPVHALPGF-AEGWVTVQDASAQGCAVFLAPQNGEHILDLCAAP 257
Query: 347 GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-NSTV 405
GGKT ++ ++ + V A+DI++ RL + + K + + ++ D R A
Sbjct: 258 GGKTTHILE-VAPEADVVAVDIDEQRLSRVYDNLKRLGMKATVK--QGDGRYPAQWCGEQ 314
Query: 406 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465
+ D++LLDAPCS GV+ + D++W RR D+ EL LQ E+LDA +KPGG LVY+T
Sbjct: 315 QFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQAEILDAVWPRLKPGGTLVYAT 374
Query: 466 CSIDPEENEERVEAFLLRHPEFSI-------DPADGLVPSDFVTKHGFFFSDPIK 513
CS+ PEEN ++++ FL R P+ ++ P +P GFF++ IK
Sbjct: 375 CSVLPEENRDQIKTFLQRTPDAALSETGTPDQPGQQNLPGG-EEGDGFFYAKLIK 428
>sp|Q87KD3|RSMB_VIBPA Ribosomal RNA small subunit methyltransferase B OS=Vibrio
parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
GN=rsmB PE=3 SV=1
Length = 427
Score = 161 bits (407), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 124/419 (29%), Positives = 205/419 (48%), Gaps = 31/419 (7%)
Query: 110 RDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPPY 169
RD L+ +I G +R+ L+ + L +K + + ++ +G Y++ + +P +
Sbjct: 35 RDHALLQEICYGALRYLPRLEMIANQLM--DKPLKGKQRVFHHLILVGIYQLSFMRIPAH 92
Query: 170 AVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSH 229
A V E V K P L+N +LR N L ++ ++ A Y H
Sbjct: 93 AAVGETVEGTKELKGPRLRGLINAVLRNY----QRNQEELDQMAVSNNAGK------YGH 142
Query: 230 PVWMVRRWTK-YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHE 288
P W+++ Y Q E+I + NN LR N + L + N PH
Sbjct: 143 PSWLLKLLQDAYPQQWESI--VDANNQKAPMWLRVNHQHHTRDEYLALLKNENIDSTPHT 200
Query: 289 LSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGG 348
++ + I++ +V++ +G +VQD +A L + + PQ G+ I+DCCAAPGG
Sbjct: 201 EAM---DAIKLAAPC-DVMKLPGFDKGWVSVQDAAAQLSINYLKPQDGELILDCCAAPGG 256
Query: 349 KTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVKC 407
KT ++ SG +V AID + RL+ ++E L ++N + + D R + +
Sbjct: 257 KTAHILERTSGSEVV-AIDCDDTRLKRVHEN--LKRLNLQAKVVCGDARNPQEWWQGEQF 313
Query: 408 DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467
D++LLDAPCS GV+ + D++W RR +D+ L LQ E+ DA +KPGG +VY+TCS
Sbjct: 314 DRILLDAPCSATGVIRRHPDIKWLRRADDIAALAELQSEIFDAMWTQLKPGGTMVYATCS 373
Query: 468 IDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARLVR 526
I P+EN E+V+AFL R + + +D P + P + +DG + A L +
Sbjct: 374 ITPQENVEQVKAFLARTADAQLLDSDPDQPGRQIL--------PGEEDMDGFYYAVLTK 424
>sp|B5F7R5|RSMB_SALA4 Ribosomal RNA small subunit methyltransferase B OS=Salmonella agona
(strain SL483) GN=rsmB PE=3 SV=1
Length = 429
Score = 160 bits (406), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 131/415 (31%), Positives = 209/415 (50%), Gaps = 34/415 (8%)
Query: 109 DRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPP 168
D+D L+ ++ G +R L+ LI L + + + + ++ +GFY+++ +PP
Sbjct: 38 DKDKALLQELCFGVLRTLSQLEWLINKLM--SRPMTGKQRTVHYLIMVGFYQLLYTRVPP 95
Query: 169 YAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYS 228
+A + E V A RP L+NG+LR+ + +L L + +D AR L
Sbjct: 96 HAALAETVEGAVSIKRPQLKGLINGVLRQFQ--RQQETL-LNEFATSD---ARFL----- 144
Query: 229 HPVWMVRR-WTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQ-VP 286
HP W+V+R Y Q + +++ NN P LR N R TR + L ++ P
Sbjct: 145 HPGWLVKRLQNAYPTQWQ--RIIEANNQRPPMWLRVN-RTHHTRDGWLGLLEDAGMKGYP 201
Query: 287 HELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAP 346
H + +R++T G EG VQD SA + PQ G+ I+D CAAP
Sbjct: 202 HP---DYPDAVRLETPAPVHALPGF-AEGWVTVQDASAQGCAVFLAPQNGEHILDLCAAP 257
Query: 347 GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-NSTV 405
GGKT ++ ++ + V A+DI++ RL + + K + + ++ D R A
Sbjct: 258 GGKTTHILE-VAPEADVLAVDIDEQRLSRVYDNLKRLGMKATVK--QGDGRYPAQWCGEQ 314
Query: 406 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465
+ D++LLDAPCS GV+ + D++W RR D+ EL LQ E+LDA + PGG LVY+T
Sbjct: 315 QFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQAEILDAVWPRLNPGGTLVYAT 374
Query: 466 CSIDPEENEERVEAFLLRHPEFSI-------DPADGLVPSDFVTKHGFFFSDPIK 513
CS+ PEEN ++++AFL R P+ ++ P +P GFF++ IK
Sbjct: 375 CSVLPEENRDQIKAFLQRTPDAALSETGTPDQPGQQNLPGG-EEGDGFFYAKLIK 428
>sp|B4TXB2|RSMB_SALSV Ribosomal RNA small subunit methyltransferase B OS=Salmonella
schwarzengrund (strain CVM19633) GN=rsmB PE=3 SV=1
Length = 429
Score = 160 bits (406), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 131/415 (31%), Positives = 209/415 (50%), Gaps = 34/415 (8%)
Query: 109 DRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPP 168
D+D L+ ++ G +R L+ LI L + + + + ++ +GFY+++ +PP
Sbjct: 38 DKDKALLQELCFGVLRTLSQLEWLINKLM--SRPMTGKQRTVHYLIMVGFYQLLYTRVPP 95
Query: 169 YAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYS 228
+A + E V A RP L+NG+LR+ + +L L + +D AR L
Sbjct: 96 HAALAETVEGAVAIKRPQLKGLINGVLRQFQ--RQQETL-LNEFATSD---ARFL----- 144
Query: 229 HPVWMVRRWTK-YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQ-VP 286
HP W+V+R Y Q + +++ NN P LR N R TR + L ++ P
Sbjct: 145 HPGWLVKRLQNAYPTQWQ--RIIDANNQRPPMWLRVN-RTHHTRDGWLGLLEDAGMKGYP 201
Query: 287 HELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAP 346
H + +R++T G EG VQD SA + PQ G+ I+D CAAP
Sbjct: 202 HP---DYPDAVRLETPAPVHALPGF-AEGWVTVQDASAQGCAVFLAPQNGEHILDLCAAP 257
Query: 347 GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-NSTV 405
GGKT ++ ++ + V A+DI++ RL + + K + + ++ D R A
Sbjct: 258 GGKTSHILE-VAPEADVLAVDIDEQRLSRVYDNLKRLGMKATVK--QGDGRYPAQWCGEQ 314
Query: 406 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465
+ D++LLDAPCS GV+ + D++W RR D+ EL LQ E+LDA +KPGG LVY+T
Sbjct: 315 QFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQAEILDAVWPRLKPGGTLVYAT 374
Query: 466 CSIDPEENEERVEAFLLRHPEFSI-------DPADGLVPSDFVTKHGFFFSDPIK 513
CS+ PEEN ++++ FL R P+ ++ P +P GFF++ IK
Sbjct: 375 CSVLPEENRDQIKTFLQRTPDAALSETGTPDQPGQQNLPGG-EEGDGFFYAKLIK 428
>sp|C0PZV1|RSMB_SALPC Ribosomal RNA small subunit methyltransferase B OS=Salmonella
paratyphi C (strain RKS4594) GN=rsmB PE=3 SV=1
Length = 429
Score = 160 bits (406), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 131/415 (31%), Positives = 209/415 (50%), Gaps = 34/415 (8%)
Query: 109 DRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPP 168
D+D L+ ++ G +R L+ LI L + + + + ++ +GFY+++ +PP
Sbjct: 38 DKDKALLQELCFGVLRTLSQLEWLINKLM--SRPMTGKQRTVHYLIMVGFYQLLYTRVPP 95
Query: 169 YAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYS 228
+A + E V A RP L+NG+LR+ + +L L + +D AR L
Sbjct: 96 HAALAETVEGAVSIKRPQLKGLINGVLRQFQ--RQQETL-LNEFATSD---ARFL----- 144
Query: 229 HPVWMVRRWTK-YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQ-VP 286
HP W+V+R Y Q + +++ NN P LR N R TR + L ++ P
Sbjct: 145 HPGWLVKRLQNAYPTQWQ--RIIDANNQRPPMWLRVN-RTHHTRDGWLGLLEDAGMKGYP 201
Query: 287 HELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAP 346
H + +R++T G EG VQD SA + PQ G+ I+D CAAP
Sbjct: 202 HP---DYPDAVRLETPAPVHALPGF-AEGWVTVQDASAQGCAVFLAPQNGEHILDLCAAP 257
Query: 347 GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-NSTV 405
GGKT ++ ++ + V A+DI++ RL + + K + + ++ D R A
Sbjct: 258 GGKTTHILE-VAPEADVLAVDIDEQRLSRVYDNLKRLGMKATVK--QGDGRYPAQWCGEQ 314
Query: 406 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465
+ D++LLDAPCS GV+ + D++W RR D+ EL LQ E+LDA +KPGG LVY+T
Sbjct: 315 QFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQAEILDAVWPRLKPGGTLVYAT 374
Query: 466 CSIDPEENEERVEAFLLRHPEFSI-------DPADGLVPSDFVTKHGFFFSDPIK 513
CS+ PEEN ++++ FL R P+ ++ P +P GFF++ IK
Sbjct: 375 CSVLPEENRDQIKTFLQRTPDAALSETGTPDQPGQQNLPGG-EEGDGFFYAKLIK 428
>sp|B4TJX9|RSMB_SALHS Ribosomal RNA small subunit methyltransferase B OS=Salmonella
heidelberg (strain SL476) GN=rsmB PE=3 SV=1
Length = 429
Score = 160 bits (406), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 132/415 (31%), Positives = 208/415 (50%), Gaps = 34/415 (8%)
Query: 109 DRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPP 168
D+D L+ ++ G +R L+ LI L + + + + ++ +GFY+++ +PP
Sbjct: 38 DKDKALLQELCFGVLRTLSQLEWLINKLM--SRPMTGKQRTVHYLIMVGFYQLLYTRVPP 95
Query: 169 YAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYS 228
+A + E V A RP L+NG+LR+ + +L L + +D AR L
Sbjct: 96 HAALAETVEGAVSIKRPQLKGLINGVLRQFQ--RQQETL-LNEFATSD---ARFL----- 144
Query: 229 HPVWMVRR-WTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQ-VP 286
HP W+V+R Y Q + I + NN P LR N R TR + L ++ P
Sbjct: 145 HPGWLVKRLQNAYPTQWQHI--IEANNQRPPMWLRVN-RTHHTRDGWLGLLEDAGMKGYP 201
Query: 287 HELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAP 346
H + +R++T G EG VQD SA + PQ G+ I+D CAAP
Sbjct: 202 HP---DYPDAVRLETPAPVHALPGF-AEGWVTVQDASAQGCAVFLAPQNGEHILDLCAAP 257
Query: 347 GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-NSTV 405
GGKT ++ ++ + V A+DI++ RL + + K + + ++ D R A
Sbjct: 258 GGKTTHILE-VAPEADVLAVDIDEQRLSRVYDNLKRLGMKATVK--QGDGRYPAQWCGEQ 314
Query: 406 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465
+ D++LLDAPCS GV+ + D++W RR D+ EL LQ E+LDA +KPGG LVY+T
Sbjct: 315 QFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQAEILDAVWPRLKPGGTLVYAT 374
Query: 466 CSIDPEENEERVEAFLLRHPEFSI-------DPADGLVPSDFVTKHGFFFSDPIK 513
CS+ PEEN ++++ FL R P+ ++ P +P GFF++ IK
Sbjct: 375 CSVLPEENRDQIKTFLQRTPDAALSETGTPDQPGQQNLPGG-EEGDGFFYAKLIK 428
>sp|Q57J62|RSMB_SALCH Ribosomal RNA small subunit methyltransferase B OS=Salmonella
choleraesuis (strain SC-B67) GN=rsmB PE=3 SV=1
Length = 429
Score = 160 bits (406), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 131/415 (31%), Positives = 209/415 (50%), Gaps = 34/415 (8%)
Query: 109 DRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPP 168
D+D L+ ++ G +R L+ LI L + + + + ++ +GFY+++ +PP
Sbjct: 38 DKDKALLQELCFGVLRTLSQLEWLINKLM--SRPMTGKQRTVHYLIMVGFYQLLYTRVPP 95
Query: 169 YAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYS 228
+A + E V A RP L+NG+LR+ + +L L + +D AR L
Sbjct: 96 HAALAETVEGAVSIKRPQLKGLINGVLRQFQ--RQQETL-LNEFATSD---ARFL----- 144
Query: 229 HPVWMVRRWTK-YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQ-VP 286
HP W+V+R Y Q + +++ NN P LR N R TR + L ++ P
Sbjct: 145 HPGWLVKRLQNAYPTQWQ--RIIDANNQRPPMWLRVN-RTHHTRDGWLGLLEDAGMKGYP 201
Query: 287 HELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAP 346
H + +R++T G EG VQD SA + PQ G+ I+D CAAP
Sbjct: 202 HP---DYPDAVRLETPAPVHALPGF-AEGWVTVQDASAQGCAVFLAPQNGEHILDLCAAP 257
Query: 347 GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-NSTV 405
GGKT ++ ++ + V A+DI++ RL + + K + + ++ D R A
Sbjct: 258 GGKTTHILE-VAPEADVLAVDIDEQRLSRVYDNLKRLGMKATVK--QGDGRYPAQWCGEQ 314
Query: 406 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465
+ D++LLDAPCS GV+ + D++W RR D+ EL LQ E+LDA +KPGG LVY+T
Sbjct: 315 QFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQAEILDAVWPRLKPGGTLVYAT 374
Query: 466 CSIDPEENEERVEAFLLRHPEFSI-------DPADGLVPSDFVTKHGFFFSDPIK 513
CS+ PEEN ++++ FL R P+ ++ P +P GFF++ IK
Sbjct: 375 CSVLPEENRDQIKTFLQRTPDAALSETGTPDQPGQQNLPGG-EEGDGFFYAKLIK 428
>sp|B5XNC2|RSMB_KLEP3 Ribosomal RNA small subunit methyltransferase B OS=Klebsiella
pneumoniae (strain 342) GN=rsmB PE=3 SV=1
Length = 431
Score = 160 bits (405), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 128/418 (30%), Positives = 207/418 (49%), Gaps = 32/418 (7%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
+ + D+D L+ ++ G +R L+ LI L + + + + ++ +G Y+++
Sbjct: 34 QKVSDKDKALLQELCFGVLRTLSQLEWLINKLM--ARPMTGKQRTVHFLIMVGLYQLLYT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+PP+A + E V A RP L+NG+LR+ + +L + E +R
Sbjct: 92 RIPPHAALAETVEGAVAIKRPQLKGLINGVLRQFQ--RQQEALLVEFAEHENR------- 142
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQ 284
Y HP W+++R + Q+ +++ NN P LR N R +R + L LLK +
Sbjct: 143 --YLHPKWLLKRLQQAWPQQWQ-EIVDANNQRPPMWLRVN-RNHHSRDEW---LALLK-E 194
Query: 285 VPHELSLHLDEFIRVKTGLQNVIQA-GLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCC 343
E H D V+ + A EG VQD SA + + P+ G+ I+D C
Sbjct: 195 AGLEGFTHPDYPDAVRLATPAPVHALPGFAEGWVTVQDASAQGCMRYLLPENGERILDLC 254
Query: 344 AAPGGKTLYMASCLSGQGLVYAIDINKGRL-RILNETAKLHQVNSVIRTIHADLRTFADN 402
AAPGGKT ++ ++ Q V A+DI++ RL R+ + +L V + + N
Sbjct: 255 AAPGGKTTHILE-VAPQAQVMAVDIDEQRLSRVYDNLKRLGMKAEVKQGDGRFPEQWCGN 313
Query: 403 STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLV 462
+ D++LLDAPCS GV+ + D++W RR D+ EL LQ E+L++ +KPGG LV
Sbjct: 314 E--QFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQAEILNSTWEHLKPGGTLV 371
Query: 463 YSTCSIDPEENEERVEAFLLRHPEFSI-------DPADGLVPSDFVTKHGFFFSDPIK 513
Y+TCSI PEEN +++ AFL R P+ + P +P GFF++ IK
Sbjct: 372 YATCSILPEENSQQISAFLARTPDAELHATGTPASPGQQNLPGP-EEGDGFFYAKLIK 428
>sp|B7NDR0|RSMB_ECOLU Ribosomal RNA small subunit methyltransferase B OS=Escherichia coli
O17:K52:H18 (strain UMN026 / ExPEC) GN=rsmB PE=3 SV=1
Length = 429
Score = 160 bits (405), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 126/419 (30%), Positives = 209/419 (49%), Gaps = 34/419 (8%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
+ + D+D L+ ++ G +R LD LI L + + + + ++ +G Y+++
Sbjct: 34 QKVSDKDKALLQELCFGVLRTLSQLDWLINKLM--ARPMTGKQRTVHYLIMVGLYQLLYT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+PP+A + E V A RP L+NG+LR+ + + A+ A
Sbjct: 92 RIPPHAALAETVEGAVAIKRPQLKGLINGVLRQFQ-----------RQQEELLAEFNASD 140
Query: 225 TIYSHPVWMVRRWTK-YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKL 283
Y HP W+++R K Y Q ++I + NN P LR N R +R + L+ +
Sbjct: 141 ACYLHPSWLLKRLQKAYPEQWQSI--VEANNQRPPMWLRVN-RTHHSRDSWLALLDEAGM 197
Query: 284 Q-VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 342
+ PH + +R++T + G +EG VQD SA +A + PQ G+ I+D
Sbjct: 198 KGFPHA---DYPDAVRLETPAPVHVLPGF-EEGWVTVQDASAQGCMAWLAPQNGEHILDL 253
Query: 343 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD- 401
CAAPGGKT ++ ++ + V A+DI++ RL + + K + + ++ D R +
Sbjct: 254 CAAPGGKTTHILE-VAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVK--QGDGRYPSQW 310
Query: 402 NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVL 461
+ D++LLDAPCS GV+ + D++W RR D+ EL LQ E+LDA +K GG L
Sbjct: 311 CGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTL 370
Query: 462 VYSTCSIDPEENEERVEAFLLRHPEFSI-------DPADGLVPSDFVTKHGFFFSDPIK 513
+Y+TCS+ PEEN +++AFL R + + P +P GFF++ IK
Sbjct: 371 IYATCSVLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNLPG-AEEGDGFFYAKLIK 428
>sp|Q8ZLM5|RSMB_SALTY Ribosomal RNA small subunit methyltransferase B OS=Salmonella
typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
GN=rsmB PE=3 SV=1
Length = 429
Score = 159 bits (403), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 131/415 (31%), Positives = 208/415 (50%), Gaps = 34/415 (8%)
Query: 109 DRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPP 168
D+D L+ ++ G +R L+ LI L + + + + ++ +GFY+++ +PP
Sbjct: 38 DKDKALLQELCFGVLRTLSQLEWLINKLM--SRPMTGKQRTVHYLIMVGFYQLLYTRVPP 95
Query: 169 YAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYS 228
+A + E V A RP L+NG+LR+ + +L L + +D AR L
Sbjct: 96 HAALAETVEGAVSIKRPQLKGLINGVLRQFQ--RQQETL-LNEFATSD---ARFL----- 144
Query: 229 HPVWMVRR-WTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQ-VP 286
HP W+V+R Y Q + I + NN P LR N R TR + L ++ P
Sbjct: 145 HPGWLVKRLQNAYPTQWQHI--IEANNQRPPMWLRVN-RTHHTRDGWLGLLEDAGMKGYP 201
Query: 287 HELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAP 346
H + +R++T G EG VQD SA + PQ G+ I+D CAAP
Sbjct: 202 HP---DYPDAVRLETPAPVHALPGF-AEGWVTVQDASAQGCAVFLAPQNGEHILDLCAAP 257
Query: 347 GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-NSTV 405
GGKT ++ ++ + V A+DI++ RL + + K + + ++ D R +
Sbjct: 258 GGKTTHILE-VAPEADVLAVDIDEQRLSRVYDNLKRLGMKATVK--QGDGRYPSQWCGEQ 314
Query: 406 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465
+ D++LLDAPCS GV+ + D++W RR D+ EL LQ E+LDA +KPGG LVY+T
Sbjct: 315 QFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQAEILDAVWPRLKPGGTLVYAT 374
Query: 466 CSIDPEENEERVEAFLLRHPEFSI-------DPADGLVPSDFVTKHGFFFSDPIK 513
CS+ PEEN ++++ FL R P+ ++ P +P GFF++ IK
Sbjct: 375 CSVLPEENRDQIKTFLQRTPDAALSETGTPDQPGQQNLPGG-EEGDGFFYAKLIK 428
>sp|B5BGV5|RSMB_SALPK Ribosomal RNA small subunit methyltransferase B OS=Salmonella
paratyphi A (strain AKU_12601) GN=rsmB PE=3 SV=1
Length = 429
Score = 159 bits (403), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 130/415 (31%), Positives = 208/415 (50%), Gaps = 34/415 (8%)
Query: 109 DRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPP 168
D+D L+ ++ G +R L+ LI L + + + + ++ +GFY+++ +PP
Sbjct: 38 DKDKALLQELCFGVLRTLSQLEWLINKLM--SRPMTGKQRTVHYLIMVGFYQLLYTRVPP 95
Query: 169 YAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYS 228
+A + E V A RP L+NG+LR+ + +L L + +D AR L
Sbjct: 96 HAALAETVEGAVSIKRPQLKGLINGVLRQFQ--RQQETL-LNEFATSD---ARFL----- 144
Query: 229 HPVWMVRR-WTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQ-VP 286
HP W+V+R Y Q + +++ NN P LR N R TR + L ++ P
Sbjct: 145 HPGWLVKRLQNAYPTQWQ--RIIEANNQRPPMWLRVN-RTHHTRDGWLGLLEDAGMKGYP 201
Query: 287 HELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAP 346
H + +R++T G EG VQD SA + PQ G+ I+D CAAP
Sbjct: 202 HP---DYPDAVRLETPAPVHALPGF-AEGWVTVQDASAQGCAVFLAPQNGEHILDLCAAP 257
Query: 347 GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-NSTV 405
GGKT ++ ++ + V A+DI++ RL + + K + + ++ D R A
Sbjct: 258 GGKTTHILE-VAPEADVLAVDIDEQRLSRVYDNLKRLGMKATVK--QGDGRYPAQWCGEQ 314
Query: 406 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465
+ D++LLDAPCS GV+ + D++W RR D+ EL LQ E+LD +KPGG LVY+T
Sbjct: 315 QFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQAEILDTVWPRLKPGGTLVYAT 374
Query: 466 CSIDPEENEERVEAFLLRHPEFSI-------DPADGLVPSDFVTKHGFFFSDPIK 513
CS+ PEEN ++++ FL R P+ ++ P +P GFF++ IK
Sbjct: 375 CSVLPEENRDQIKTFLQRTPDAALSETGTPDQPGQQNLPGG-EEGDGFFYAKLIK 428
>sp|Q5PIT6|RSMB_SALPA Ribosomal RNA small subunit methyltransferase B OS=Salmonella
paratyphi A (strain ATCC 9150 / SARB42) GN=rsmB PE=3
SV=1
Length = 429
Score = 159 bits (403), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 130/415 (31%), Positives = 208/415 (50%), Gaps = 34/415 (8%)
Query: 109 DRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPP 168
D+D L+ ++ G +R L+ LI L + + + + ++ +GFY+++ +PP
Sbjct: 38 DKDKALLQELCFGVLRTLSQLEWLINKLM--SRPMTGKQRTVHYLIMVGFYQLLYTRVPP 95
Query: 169 YAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYS 228
+A + E V A RP L+NG+LR+ + +L L + +D AR L
Sbjct: 96 HAALAETVEGAVSIKRPQLKGLINGVLRQFQ--RQQETL-LNEFATSD---ARFL----- 144
Query: 229 HPVWMVRR-WTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQ-VP 286
HP W+V+R Y Q + +++ NN P LR N R TR + L ++ P
Sbjct: 145 HPGWLVKRLQNAYPTQWQ--RIIEANNQRPPMWLRVN-RTHHTRDGWLGLLEDAGMKGYP 201
Query: 287 HELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAP 346
H + +R++T G EG VQD SA + PQ G+ I+D CAAP
Sbjct: 202 HP---DYPDAVRLETPAPVHALPGF-AEGWVTVQDASAQGCAVFLAPQNGEHILDLCAAP 257
Query: 347 GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-NSTV 405
GGKT ++ ++ + V A+DI++ RL + + K + + ++ D R A
Sbjct: 258 GGKTTHILE-VAPEADVLAVDIDEQRLSRVYDNLKRLGMKATVK--QGDGRYPAQWCGEQ 314
Query: 406 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465
+ D++LLDAPCS GV+ + D++W RR D+ EL LQ E+LD +KPGG LVY+T
Sbjct: 315 QFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQAEILDTVWPRLKPGGTLVYAT 374
Query: 466 CSIDPEENEERVEAFLLRHPEFSI-------DPADGLVPSDFVTKHGFFFSDPIK 513
CS+ PEEN ++++ FL R P+ ++ P +P GFF++ IK
Sbjct: 375 CSVLPEENRDQIKTFLQRTPDAALSETGTPDQPGQQNLPGG-EEGDGFFYAKLIK 428
>sp|B5FJI4|RSMB_SALDC Ribosomal RNA small subunit methyltransferase B OS=Salmonella
dublin (strain CT_02021853) GN=rsmB PE=3 SV=1
Length = 429
Score = 159 bits (402), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 130/415 (31%), Positives = 209/415 (50%), Gaps = 34/415 (8%)
Query: 109 DRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPP 168
D+D L+ ++ G +R L+ LI L + + + + ++ +GFY+++ +PP
Sbjct: 38 DKDKALLQELCFGVLRTLSQLEWLINKLM--SRPMTGKQRTVHYLIMVGFYQLLYTRVPP 95
Query: 169 YAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYS 228
+A + E V A RP L+NG+LR+ + +L L + +D AR L
Sbjct: 96 HAALAETVEGAVSIKRPQLKGLINGVLRQFQ--RQQETL-LNEFATSD---ARFL----- 144
Query: 229 HPVWMVRRWTK-YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQ-VP 286
HP W+V+R Y Q + +++ NN P LR N R TR + L ++ P
Sbjct: 145 HPGWLVKRLQNAYPTQWQ--RIIEANNQRPPMWLRVN-RTHHTRDGWLGLLEDAGMKGYP 201
Query: 287 HELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAP 346
H + +R++T G EG VQD SA + PQ G+ I+D C+AP
Sbjct: 202 HP---DYPDAVRLETPAPVHALPGF-AEGWVTVQDASAQGCAVFLAPQNGEHILDLCSAP 257
Query: 347 GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-NSTV 405
GGKT ++ ++ + V A+DI++ RL + + K + + ++ D R A
Sbjct: 258 GGKTTHILE-VAPEADVLAVDIDEQRLSRVYDNLKRLGMKATVK--QGDGRYPAQWCGEQ 314
Query: 406 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465
+ D++LLDAPCS GV+ + D++W RR D+ EL LQ E+LDA +KPGG LVY+T
Sbjct: 315 QFDRILLDAPCSATGVIRRHPDIKWLRRDRDIVELAQLQAEILDAVWPRLKPGGTLVYAT 374
Query: 466 CSIDPEENEERVEAFLLRHPEFSI-------DPADGLVPSDFVTKHGFFFSDPIK 513
CS+ PEEN ++++ FL R P+ ++ P +P GFF++ IK
Sbjct: 375 CSVLPEENRDQIKTFLQRTPDAALSETGTPDQPGQQNLPGG-EEGDGFFYAKLIK 428
>sp|Q7MGK4|RSMB_VIBVY Ribosomal RNA small subunit methyltransferase B OS=Vibrio
vulnificus (strain YJ016) GN=rsmB PE=3 SV=1
Length = 426
Score = 159 bits (401), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 123/414 (29%), Positives = 202/414 (48%), Gaps = 30/414 (7%)
Query: 110 RDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPPY 169
RD L+ +I G +R+ L+ + L +K + + ++ +G Y++ + +P +
Sbjct: 35 RDHALLQEICYGALRYLPRLESIAGKLM--DKPLKGKQRVFHHLILVGLYQLGHMRIPAH 92
Query: 170 AVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSH 229
A V E V A+ P L+N +LR ++ +L D A Y H
Sbjct: 93 AAVGETVEGAQALKGPRLRGLINAVLRNYQ--REQQAL--------DEFSVSHNAGKYVH 142
Query: 230 PVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHEL 289
P W+++ ++ + NN P + LR N D L LLK +
Sbjct: 143 PSWLLKILQDAYPEQWQTIVEANNNKAPMW-LRVNH----AHHDRDEYLQLLK-NANIDS 196
Query: 290 SLHLDEFIRVKTGLQ-NVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGG 348
+LH + +K +V ++G +VQD +A L + P+ G+ I+DCCAAPGG
Sbjct: 197 TLHSEAMDAIKLAAPCDVHSLPGFEQGWVSVQDAAAQLSFNYLQPKDGELILDCCAAPGG 256
Query: 349 KTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVKC 407
KT ++ +S + +V A+D ++ RL+ + E L ++N + I D R +
Sbjct: 257 KTAHILERVSAREVV-ALDCDEQRLKRVTEN--LKRLNLQAKVICGDARNPEQWWQGEQF 313
Query: 408 DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467
D++LLDAPCS GV+ + D++W RR ED+ L LQ E+ DA +KPGG LVY+TCS
Sbjct: 314 DRILLDAPCSATGVIRRHPDIKWLRRAEDITALAQLQSEIFDAMWAQLKPGGTLVYATCS 373
Query: 468 IDPEENEERVEAFLLRHPEFSI------DPADGLVPSDFVTKHGFFFSDPIKHS 515
I P EN E+V+AFL R P + +P ++P + GF+++ +K +
Sbjct: 374 ITPMENVEQVKAFLARTPAAQLVGSERENPGRQILPGE-EDMDGFYYAVLVKQA 426
>sp|B2VK95|RSMB_ERWT9 Ribosomal RNA small subunit methyltransferase B OS=Erwinia
tasmaniensis (strain DSM 17950 / Et1/99) GN=rsmB PE=3
SV=1
Length = 429
Score = 158 bits (399), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 128/423 (30%), Positives = 207/423 (48%), Gaps = 29/423 (6%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
K + D+D L+ ++ G +R L+ +I L + + + + ++ +G Y+++
Sbjct: 34 KSVGDKDAALLQELCYGVLRTLPQLEWVIGRLM--SRPMTGKQRAVHFLIMVGLYQLMFT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P +A + E V A RP L+NG+LR+ +D + ND Q
Sbjct: 92 RIPAHAALAETVEGAVALKRPQLKGLINGVLRQFQRQQDELMQQM-----NDGDQQ---- 142
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQ 284
Y HP W++ R K + +++ NN P LR N + A L + K
Sbjct: 143 --YLHPKWLLER-LKRAWPAQWKQIVDANNQRPPMWLRVNRQHHSRDAWLTLLEESGKQA 199
Query: 285 VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 344
H H D +R+++ V Q +G VQD SA VA++ P+ G+ I+D CA
Sbjct: 200 FAH--PQHGDA-LRLESPC-AVGQLPGFDQGWITVQDVSAQGCVALLAPRDGEQILDLCA 255
Query: 345 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-NS 403
APGGKT ++ + Q V A+D++ RL ++E L ++ D RT A
Sbjct: 256 APGGKTTHILEA-APQAKVMAVDVDAQRLARVSEN--LQRLTMQAEVKQGDGRTPAAWCG 312
Query: 404 TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463
+ D++LLDAPCS GV+ + D++W RR D+ EL LQ ++LDA +KPGG L+Y
Sbjct: 313 DTQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAALQQQILDAVWPHLKPGGTLLY 372
Query: 464 STCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAAR 523
+TCS+ PEEN ++ FL RH + + L+ + +T+ G P DG + A+
Sbjct: 373 ATCSVLPEENHVQIGQFLQRHADAT------LIETGDLTQPGIQVF-PQADGGDGFYYAK 425
Query: 524 LVR 526
LV+
Sbjct: 426 LVK 428
>sp|Q9KVU5|RSMB_VIBCH Ribosomal RNA small subunit methyltransferase B OS=Vibrio cholerae
serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
GN=rsmB PE=3 SV=1
Length = 434
Score = 157 bits (398), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 129/415 (31%), Positives = 209/415 (50%), Gaps = 34/415 (8%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
+ + RD L+ +I G +R L+ + L K + + ++ +G Y++ +
Sbjct: 38 QQIRPRDHALLQEICYGVLRQLPRLESISQALM--GKPLKGKQRVFHFLILVGLYQLSFM 95
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P +A V E V A+ P L+N +LR +D EG D A
Sbjct: 96 RIPAHAAVGETVEGAQDLKGPRLRGLINAVLRNYQ--RDQ--------EGLDAQATSHDA 145
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRAD---LVMQLNLL 281
Y HP W+++ K E+ +++ NNS LR N + TRA+ L+ Q ++
Sbjct: 146 GRYGHPGWLLKL-LKESYPEQWQQIVEANNSKAPMWLRVNHQHH-TRAEYQALLEQAGIV 203
Query: 282 KLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVD 341
PH + ++ + ++T +V Q EG +VQD +A L + + PQ G+ I+D
Sbjct: 204 T--TPHAQA---EDALCLETPC-DVHQLPGFAEGWVSVQDAAAQLALTYLAPQAGELILD 257
Query: 342 CCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD 401
CCAAPGGKT ++ + + V AID ++ RL+ + E L ++ + I D R
Sbjct: 258 CCAAPGGKTAHILE-RTPESQVVAIDCDETRLKRVREN--LQRLELTAQVICGDARYPQQ 314
Query: 402 N-STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGV 460
+ D++LLDAPCS GV+ + D++W RR +D+ L LQ E+LDA +KPGG
Sbjct: 315 WWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIAALAELQREILDAMWQQLKPGGS 374
Query: 461 LVYSTCSIDPEENEERVEAFLLRHPEFSI---DPAD---GLVPSDFVTKHGFFFS 509
LVY+TCSI P+EN +V+AFL R P+ + DPA ++P + GF+++
Sbjct: 375 LVYATCSITPQENRLQVKAFLERTPDARLVGSDPAQPGRQILPGEEAMD-GFYYA 428
>sp|B7NLK8|RSMB_ECO7I Ribosomal RNA small subunit methyltransferase B OS=Escherichia coli
O7:K1 (strain IAI39 / ExPEC) GN=rsmB PE=3 SV=1
Length = 429
Score = 157 bits (397), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 128/419 (30%), Positives = 210/419 (50%), Gaps = 34/419 (8%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
+ + D+D L+ ++ G +R LD LI L + + + + ++ +G Y+++
Sbjct: 34 QKVSDKDKALLQELCFGVLRTLSQLDWLINKLM--ARPMTGKQRTVHYLIMVGLYQLLYT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+PP+A + E V A RP L+NG+LR+ +D L + +D AR
Sbjct: 92 RIPPHAALAETVEGAVAIKRPQLKGLINGVLRQFQRQQDEL---LAEFNASD---AR--- 142
Query: 225 TIYSHPVWMVRRWTK-YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKL 283
Y HP W+++R K Y Q ++I + NN P LR N R +R + L+ +
Sbjct: 143 --YLHPSWLLKRLQKAYPEQWQSI--VEANNQRPPMWLRVN-RTHHSRDSWLALLDEAGM 197
Query: 284 Q-VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 342
+ PH + ++++T G +EG VQD SA + + PQ G+ I+D
Sbjct: 198 KGFPHA---DYPDAVQLETPAPVHALPGF-EEGWVTVQDASAQGCMTWLAPQNGEHILDL 253
Query: 343 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD- 401
CAAPGGKT ++ ++ + V A+DI++ RL + + K + + ++ D R +
Sbjct: 254 CAAPGGKTTHILE-VAPEAQVLAVDIDEQRLSRVYDNLKRLGMKATVK--QGDGRYPSQW 310
Query: 402 NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVL 461
+ D++LLDAPCS GV+ + D++W RR D+ EL LQ E+LDA +K GG L
Sbjct: 311 CGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTL 370
Query: 462 VYSTCSIDPEENEERVEAFLLRHPEFSI-------DPADGLVPSDFVTKHGFFFSDPIK 513
VY+TCS+ PEEN +++AFL R + + P +P GFF++ IK
Sbjct: 371 VYATCSVLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNLPG-AEEGDGFFYAKLIK 428
>sp|Q7UBD3|RSMB_SHIFL Ribosomal RNA small subunit methyltransferase B OS=Shigella
flexneri GN=rsmB PE=3 SV=1
Length = 429
Score = 157 bits (397), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 128/431 (29%), Positives = 207/431 (48%), Gaps = 45/431 (10%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
+ + D+D L+ ++ G +R LD LI L + + + + ++ +G Y+++
Sbjct: 34 QKVSDKDKALLQELCFGVLRTLSQLDWLINKLM--ARPMTGKQRTVHYLIMVGLYQLLYT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+PP+A + E V A RP L+NG+LR+ R Q LA
Sbjct: 92 RIPPHAALAETVEGAIAIKRPQLKGLINGVLRQF-----------------QRRQEELLA 134
Query: 225 TI------YSHPVWMVRRWTK-YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQ 277
Y HP W+++R K Y Q ++I NN P LR N R +R +
Sbjct: 135 EFNTRDARYLHPSWLLKRLQKAYPEQWQSIAEA--NNQRPPMWLRIN-RTHHSRDSWLAL 191
Query: 278 LNLLKLQ-VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPG 336
L+ ++ PH + +R++T G ++G VQD SA + + PQ G
Sbjct: 192 LDEAGMKGFPHA---DYPDAVRLETPAPVHALPGF-EDGWVTVQDASAQGCMTWLAPQNG 247
Query: 337 QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADL 396
+ I+D CAAPGGKT ++ ++ + V A+DI++ RL + + K + + ++ D
Sbjct: 248 EHILDLCAAPGGKTTHILE-VAPEAQVVAVDIDEQRLSRIYDNLKRLGMKATVK--QGDG 304
Query: 397 RTFAD-NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLV 455
R + + D++LLDAPCS GV+ + D++W RR D+ EL LQ E+LDA +
Sbjct: 305 RYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHL 364
Query: 456 KPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHS 515
K GG LVY+TCS+ PEEN +++AFL R AD + + + P
Sbjct: 365 KSGGTLVYATCSVLPEENSLQIKAFLQRT-------ADAELCETGTPEQPGKQNQPGAEE 417
Query: 516 LDGAFAARLVR 526
DG F A+L++
Sbjct: 418 GDGFFYAKLIK 428
>sp|Q31VY8|RSMB_SHIBS Ribosomal RNA small subunit methyltransferase B OS=Shigella boydii
serotype 4 (strain Sb227) GN=rsmB PE=3 SV=1
Length = 429
Score = 157 bits (397), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 129/419 (30%), Positives = 210/419 (50%), Gaps = 34/419 (8%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
+ + D+D L+ ++ G +R LD LI L + + + + ++ +G Y+++
Sbjct: 34 QKVSDKDKALLQELCFGVLRTLSQLDWLINKLM--ARPMTGKQRTVHYLIMVGLYQLLYT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+PP+A + E V A RP L+NG+LR+ + L L K +D AR
Sbjct: 92 RIPPHAALAETVEGAIAIKRPQLKGLINGVLRQFQ--RQQEEL-LAKFNASD---AR--- 142
Query: 225 TIYSHPVWMVRRWTK-YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKL 283
Y HP W+++R K Y Q ++I + NN P LR N R +R + L+ +
Sbjct: 143 --YLHPSWLLKRLQKAYPEQWQSI--VEANNQRPPMWLRVN-RTHHSRDSWLALLDEAGM 197
Query: 284 Q-VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 342
+ PH + +R++T G ++G VQD SA + + PQ G+ I+D
Sbjct: 198 KGFPHA---DYPDAVRLETPAPVHALPGF-EDGWVTVQDASAQGCMTWLAPQNGEHILDL 253
Query: 343 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD- 401
CAAPGGKT ++ ++ + V A+DI++ RL + + K + + ++ D R +
Sbjct: 254 CAAPGGKTTHILE-VAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVK--QGDGRYPSQW 310
Query: 402 NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVL 461
+ D++LLDAPCS GV+ + D++W RR D+ EL LQ E+LDA +K GG L
Sbjct: 311 CGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTL 370
Query: 462 VYSTCSIDPEENEERVEAFLLRHPEFSI-------DPADGLVPSDFVTKHGFFFSDPIK 513
VY+TCS+ PEEN +++AFL R + + P +P GFF++ IK
Sbjct: 371 VYATCSVLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNLPG-AEEGDGFFYAKLIK 428
>sp|Q1R644|RSMB_ECOUT Ribosomal RNA small subunit methyltransferase B OS=Escherichia coli
(strain UTI89 / UPEC) GN=rsmB PE=3 SV=1
Length = 429
Score = 157 bits (396), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 128/419 (30%), Positives = 210/419 (50%), Gaps = 34/419 (8%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
+ + D+D L+ ++ G +R LD LI L + + + + ++ +G Y+++
Sbjct: 34 QKVSDKDKALLQELCFGVLRTLSQLDWLINKLM--ARPMTGKQRTVHYLIMVGLYQLLYT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+PP+A + E V A RP L+NG+LR+ +D L + +D AR
Sbjct: 92 RIPPHAALAETVEGAVAIKRPQLKGLINGVLRQFQRQQDEL---LAEFNASD---AR--- 142
Query: 225 TIYSHPVWMVRRWTK-YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKL 283
Y HP W+++R K Y Q ++I + NN P LR N R +R + L+ +
Sbjct: 143 --YLHPSWLLKRLQKAYPEQWQSI--VEANNQRPPMWLRVN-RTHHSRDSWLALLDEAGM 197
Query: 284 Q-VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 342
+ PH + ++++T G +EG VQD SA + + PQ G+ I+D
Sbjct: 198 KGFPHA---DYPDAVQLETPAPVHALPGF-EEGWVTVQDASAQGCMTWLAPQNGEHILDL 253
Query: 343 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD- 401
CAAPGGKT ++ ++ + V A+DI++ RL + + K + + ++ D R +
Sbjct: 254 CAAPGGKTTHILE-VAPEAQVLAVDIDEQRLSRVYDNLKRLGMKATVK--QGDGRYPSQW 310
Query: 402 NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVL 461
+ D++LLDAPCS GV+ + D++W RR D+ EL LQ E+LDA +K GG L
Sbjct: 311 CGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWSHLKSGGTL 370
Query: 462 VYSTCSIDPEENEERVEAFLLRHPEFSI-------DPADGLVPSDFVTKHGFFFSDPIK 513
VY+TCS+ PEEN +++AFL R + + P +P GFF++ IK
Sbjct: 371 VYATCSMLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNLPG-AEEGDGFFYAKLIK 428
>sp|A1AGI0|RSMB_ECOK1 Ribosomal RNA small subunit methyltransferase B OS=Escherichia coli
O1:K1 / APEC GN=rsmB PE=3 SV=1
Length = 429
Score = 157 bits (396), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 128/419 (30%), Positives = 210/419 (50%), Gaps = 34/419 (8%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
+ + D+D L+ ++ G +R LD LI L + + + + ++ +G Y+++
Sbjct: 34 QKVSDKDKALLQELCFGVLRTLSQLDWLINKLM--ARPMTGKQRTVHYLIMVGLYQLLYT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+PP+A + E V A RP L+NG+LR+ +D L + +D AR
Sbjct: 92 RIPPHAALAETVEGAVAIKRPQLKGLINGVLRQFQRQQDEL---LAEFNASD---AR--- 142
Query: 225 TIYSHPVWMVRRWTK-YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKL 283
Y HP W+++R K Y Q ++I + NN P LR N R +R + L+ +
Sbjct: 143 --YLHPSWLLKRLQKAYPEQWQSI--VEANNQRPPMWLRVN-RTHHSRDSWLALLDEAGM 197
Query: 284 Q-VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 342
+ PH + ++++T G +EG VQD SA + + PQ G+ I+D
Sbjct: 198 KGFPHA---DYPDAVQLETPAPVHALPGF-EEGWVTVQDASAQGCMTWLAPQNGEHILDL 253
Query: 343 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD- 401
CAAPGGKT ++ ++ + V A+DI++ RL + + K + + ++ D R +
Sbjct: 254 CAAPGGKTTHILE-VAPEAQVLAVDIDEQRLSRVYDNLKRLGMKATVK--QGDGRYPSQW 310
Query: 402 NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVL 461
+ D++LLDAPCS GV+ + D++W RR D+ EL LQ E+LDA +K GG L
Sbjct: 311 CGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWSHLKSGGTL 370
Query: 462 VYSTCSIDPEENEERVEAFLLRHPEFSI-------DPADGLVPSDFVTKHGFFFSDPIK 513
VY+TCS+ PEEN +++AFL R + + P +P GFF++ IK
Sbjct: 371 VYATCSMLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNLPG-AEEGDGFFYAKLIK 428
>sp|B7MCQ4|RSMB_ECO45 Ribosomal RNA small subunit methyltransferase B OS=Escherichia coli
O45:K1 (strain S88 / ExPEC) GN=rsmB PE=3 SV=1
Length = 429
Score = 157 bits (396), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 128/419 (30%), Positives = 210/419 (50%), Gaps = 34/419 (8%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
+ + D+D L+ ++ G +R LD LI L + + + + ++ +G Y+++
Sbjct: 34 QKVSDKDKALLQELCFGVLRTLSQLDWLINKLM--ARPMTGKQRTVHYLIMVGLYQLLYT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+PP+A + E V A RP L+NG+LR+ +D L + +D AR
Sbjct: 92 RIPPHAALAETVEGAVAIKRPQLKGLINGVLRQFQRQQDEL---LAEFNASD---AR--- 142
Query: 225 TIYSHPVWMVRRWTK-YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKL 283
Y HP W+++R K Y Q ++I + NN P LR N R +R + L+ +
Sbjct: 143 --YLHPSWLLKRLQKAYPEQWQSI--VEANNQRPPMWLRVN-RTHHSRDSWLALLDEAGM 197
Query: 284 Q-VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 342
+ PH + ++++T G +EG VQD SA + + PQ G+ I+D
Sbjct: 198 KGFPHA---DYPDAVQLETPAPVHALPGF-EEGWVTVQDASAQGCMTWLAPQNGEHILDL 253
Query: 343 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD- 401
CAAPGGKT ++ ++ + V A+DI++ RL + + K + + ++ D R +
Sbjct: 254 CAAPGGKTTHILE-VAPEAQVLAVDIDEQRLSRVYDNLKRLGMKATVK--QGDGRYPSQW 310
Query: 402 NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVL 461
+ D++LLDAPCS GV+ + D++W RR D+ EL LQ E+LDA +K GG L
Sbjct: 311 CGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWSHLKSGGTL 370
Query: 462 VYSTCSIDPEENEERVEAFLLRHPEFSI-------DPADGLVPSDFVTKHGFFFSDPIK 513
VY+TCS+ PEEN +++AFL R + + P +P GFF++ IK
Sbjct: 371 VYATCSMLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNLPG-AEEGDGFFYAKLIK 428
>sp|Q3YWX1|RSMB_SHISS Ribosomal RNA small subunit methyltransferase B OS=Shigella sonnei
(strain Ss046) GN=rsmB PE=3 SV=1
Length = 429
Score = 157 bits (396), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 127/425 (29%), Positives = 207/425 (48%), Gaps = 46/425 (10%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
+ + D+D L+ ++ G +R LD LI L + + + + ++ +G Y+++
Sbjct: 34 QKVSDKDKALLQELCFGVLRTLSQLDWLINKLM--ARPMTGKQRTVHYLIMVGLYQLLYT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+PP+A + E V A RP L+NG+LR+ R Q LA
Sbjct: 92 RIPPHAALAETVEGAIAIKRPQLKGLINGVLRQF-----------------QRQQEELLA 134
Query: 225 TI------YSHPVWMVRRWTK-YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQ 277
Y HP W+++R K Y Q ++I + NN P LR N R +R +
Sbjct: 135 EFNTSDARYLHPSWLLKRLQKAYPEQWQSI--VEANNQRPPMWLRVN-RTHHSRDSWLAL 191
Query: 278 LNLLKLQ-VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPG 336
L+ ++ PH + +R++T G ++G VQD SA + + PQ G
Sbjct: 192 LDEAGMKGFPHA---DYPDAVRLETPAPVHALPGF-EDGWVTVQDASAQGCMTWLAPQNG 247
Query: 337 QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADL 396
+ I+D CAAPGGKT ++ ++ + V A+DI++ RL +++ K + + ++ D
Sbjct: 248 EHILDLCAAPGGKTTHILE-VAPEAQVVAVDIDEQRLSRVHDNLKRLGMKATVK--QGDG 304
Query: 397 RTFAD-NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLV 455
R + + D++LLDAPCS GV+ + D++W RR D+ EL LQ E+LDA +
Sbjct: 305 RYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHL 364
Query: 456 KPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSI-------DPADGLVPSDFVTKHGFFF 508
K GG LVY+TCS+ PEEN +++AFL R + + P +P GFF+
Sbjct: 365 KSGGTLVYATCSVLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNLPG-AEEGDGFFY 423
Query: 509 SDPIK 513
+ IK
Sbjct: 424 AKLIK 428
>sp|Q0T014|RSMB_SHIF8 Ribosomal RNA small subunit methyltransferase B OS=Shigella
flexneri serotype 5b (strain 8401) GN=rsmB PE=3 SV=2
Length = 429
Score = 157 bits (396), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 128/431 (29%), Positives = 207/431 (48%), Gaps = 45/431 (10%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
+ + D+D L+ ++ G +R LD LI L + + + + ++ +G Y+++
Sbjct: 34 QKVSDKDKALLQELCFGVLRTLSQLDWLINKLM--ARPMTGKQRTVHYLIMVGLYQLLYT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+PP+A + E V A RP L+NG+LR+ R Q LA
Sbjct: 92 RIPPHAALAETVEGAIAIKRPQLKGLINGVLRQF-----------------QRRQEELLA 134
Query: 225 TI------YSHPVWMVRRWTK-YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQ 277
Y HP W+++R K Y Q ++I NN P LR N R +R +
Sbjct: 135 EFNTRDARYLHPSWLLKRLQKAYPEQWQSIAEA--NNQRPPMWLRIN-RTHHSRDSWLAL 191
Query: 278 LNLLKLQ-VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPG 336
L+ ++ PH + +R++T G ++G VQD SA + + PQ G
Sbjct: 192 LDEAGMKGFPHA---DYPDAVRLETPAPVHALPGF-EDGWVTVQDASAQGCMTWLAPQNG 247
Query: 337 QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADL 396
+ I+D CAAPGGKT ++ ++ + V A+DI++ RL + + K + + ++ D
Sbjct: 248 EHILDLCAAPGGKTTHILE-VAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVK--QGDG 304
Query: 397 RTFAD-NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLV 455
R + + D++LLDAPCS GV+ + D++W RR D+ EL LQ E+LDA +
Sbjct: 305 RYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHL 364
Query: 456 KPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHS 515
K GG LVY+TCS+ PEEN +++AFL R AD + + + P
Sbjct: 365 KSGGTLVYATCSVLPEENSLQIKAFLQRT-------ADAELCETGTPEQPGKQNQPGAEE 417
Query: 516 LDGAFAARLVR 526
DG F A+L++
Sbjct: 418 GDGFFYAKLIK 428
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.136 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 192,008,119
Number of Sequences: 539616
Number of extensions: 8269979
Number of successful extensions: 22557
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 359
Number of HSP's successfully gapped in prelim test: 322
Number of HSP's that attempted gapping in prelim test: 21659
Number of HSP's gapped (non-prelim): 704
length of query: 528
length of database: 191,569,459
effective HSP length: 122
effective length of query: 406
effective length of database: 125,736,307
effective search space: 51048940642
effective search space used: 51048940642
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)