Query 009708
Match_columns 528
No_of_seqs 462 out of 3386
Neff 7.6
Searched_HMMs 46136
Date Thu Mar 28 16:23:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009708.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009708hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK14901 16S rRNA methyltransf 100.0 1.1E-82 2.5E-87 678.1 47.7 427 59-527 2-433 (434)
2 PRK14903 16S rRNA methyltransf 100.0 5E-80 1.1E-84 655.0 48.5 422 59-527 4-430 (431)
3 TIGR00563 rsmB ribosomal RNA s 100.0 4.7E-79 1E-83 649.2 49.5 424 61-527 1-426 (426)
4 PRK14904 16S rRNA methyltransf 100.0 6.9E-79 1.5E-83 651.0 50.6 437 59-528 3-444 (445)
5 PRK14902 16S rRNA methyltransf 100.0 1.1E-78 2.4E-83 650.0 50.8 437 59-527 4-443 (444)
6 PRK10901 16S rRNA methyltransf 100.0 1.4E-78 3.1E-83 645.3 49.3 424 59-527 3-427 (427)
7 COG0144 Sun tRNA and rRNA cyto 100.0 1E-63 2.3E-68 516.9 36.3 346 166-527 1-354 (355)
8 PRK11933 yebU rRNA (cytosine-C 100.0 5.5E-59 1.2E-63 494.1 33.8 296 228-527 3-307 (470)
9 KOG1122 tRNA and rRNA cytosine 100.0 3.5E-56 7.5E-61 448.2 22.1 421 83-527 11-441 (460)
10 PF01189 Nol1_Nop2_Fmu: NOL1/N 100.0 2.7E-54 5.9E-59 434.1 21.8 273 249-525 1-283 (283)
11 TIGR00446 nop2p NOL1/NOP2/sun 100.0 3.5E-49 7.5E-54 394.5 29.8 260 261-526 1-264 (264)
12 KOG2360 Proliferation-associat 100.0 3.9E-30 8.5E-35 257.5 18.0 282 242-527 115-413 (413)
13 KOG2198 tRNA cytosine-5-methyl 100.0 2.2E-30 4.7E-35 259.8 14.7 182 312-494 132-326 (375)
14 COG0781 NusB Transcription ter 99.9 3.1E-27 6.8E-32 213.7 13.4 134 57-202 10-145 (151)
15 PF01029 NusB: NusB family; I 99.9 3E-27 6.5E-32 212.5 10.0 130 59-200 2-134 (134)
16 cd00619 Terminator_NusB Transc 99.9 1.8E-26 3.9E-31 206.3 13.4 127 58-201 2-129 (130)
17 PRK00202 nusB transcription an 99.9 2.5E-26 5.5E-31 207.2 13.5 128 58-202 4-132 (137)
18 TIGR01951 nusB transcription a 99.9 4.3E-26 9.4E-31 203.6 13.6 126 58-200 2-128 (129)
19 cd00620 Methyltransferase_Sun 99.9 1.2E-25 2.6E-30 199.9 14.1 123 60-201 3-125 (126)
20 cd00447 NusB_Sun RNA binding d 99.9 9.8E-23 2.1E-27 181.9 13.8 124 60-201 2-128 (129)
21 PRK09634 nusB transcription an 99.9 8.8E-21 1.9E-25 179.6 14.4 93 109-202 110-202 (207)
22 COG1092 Predicted SAM-dependen 99.7 6.7E-17 1.5E-21 167.7 17.4 163 310-490 195-364 (393)
23 PRK15128 23S rRNA m(5)C1962 me 99.7 1.5E-16 3.2E-21 167.3 18.7 165 309-491 197-368 (396)
24 PF10672 Methyltrans_SAM: S-ad 99.7 3.2E-16 6.9E-21 156.9 11.3 143 310-473 101-246 (286)
25 COG4123 Predicted O-methyltran 99.6 2.3E-15 5E-20 146.6 13.7 153 323-484 32-185 (248)
26 TIGR03533 L3_gln_methyl protei 99.6 1.3E-14 2.9E-19 146.5 18.0 129 333-466 119-252 (284)
27 COG2242 CobL Precorrin-6B meth 99.6 9.4E-15 2E-19 135.5 15.1 139 321-491 20-158 (187)
28 PF12847 Methyltransf_18: Meth 99.6 2.4E-15 5.1E-20 130.0 10.5 112 335-466 1-112 (112)
29 PRK11783 rlmL 23S rRNA m(2)G24 99.6 4.1E-15 8.8E-20 167.6 15.1 147 310-472 516-663 (702)
30 PF05175 MTS: Methyltransferas 99.6 2.2E-15 4.7E-20 141.0 9.5 126 321-467 17-142 (170)
31 PF13659 Methyltransf_26: Meth 99.6 3.6E-15 7.9E-20 130.0 9.4 115 336-466 1-116 (117)
32 PRK09328 N5-glutamine S-adenos 99.6 5.3E-14 1.2E-18 141.4 16.3 230 231-483 9-252 (275)
33 TIGR03704 PrmC_rel_meth putati 99.6 7.4E-14 1.6E-18 138.7 16.3 140 336-484 87-231 (251)
34 TIGR01177 conserved hypothetic 99.5 4.9E-14 1.1E-18 145.6 14.3 128 324-469 171-298 (329)
35 PRK00377 cbiT cobalt-precorrin 99.5 1.2E-13 2.6E-18 132.4 15.6 134 323-484 28-161 (198)
36 TIGR00537 hemK_rel_arch HemK-r 99.5 1.5E-13 3.2E-18 129.5 15.5 158 321-492 5-163 (179)
37 COG2519 GCD14 tRNA(1-methylade 99.5 2.4E-13 5.3E-18 131.4 16.2 127 311-466 70-197 (256)
38 PRK14967 putative methyltransf 99.5 2.4E-13 5.3E-18 132.7 16.4 144 314-468 13-162 (223)
39 COG2226 UbiE Methylase involve 99.5 2.1E-13 4.6E-18 132.9 14.1 117 326-467 42-158 (238)
40 TIGR00080 pimt protein-L-isoas 99.5 2.3E-13 4.9E-18 132.2 13.7 120 315-464 57-176 (215)
41 PRK11805 N5-glutamine S-adenos 99.5 3.2E-13 7E-18 137.8 14.7 125 337-464 135-262 (307)
42 PRK04266 fibrillarin; Provisio 99.5 2.2E-12 4.7E-17 126.0 18.9 113 324-464 59-175 (226)
43 PRK03522 rumB 23S rRNA methylu 99.5 3.6E-13 7.8E-18 138.3 14.1 88 329-420 167-254 (315)
44 PRK13944 protein-L-isoaspartat 99.5 6.5E-13 1.4E-17 128.1 14.4 112 324-464 61-172 (205)
45 PF01209 Ubie_methyltran: ubiE 99.5 9.7E-14 2.1E-18 136.1 8.2 118 326-467 38-155 (233)
46 TIGR00536 hemK_fam HemK family 99.5 1.3E-12 2.8E-17 132.3 16.3 128 337-467 116-246 (284)
47 PF13847 Methyltransf_31: Meth 99.5 5.5E-13 1.2E-17 122.2 12.0 111 334-467 2-112 (152)
48 TIGR02469 CbiT precorrin-6Y C5 99.5 1.7E-12 3.7E-17 113.8 14.5 112 327-465 11-122 (124)
49 PRK07402 precorrin-6B methylas 99.4 1.5E-12 3.3E-17 124.5 15.0 125 315-467 20-144 (196)
50 PF08704 GCD14: tRNA methyltra 99.4 5.4E-13 1.2E-17 131.1 11.9 126 314-466 19-148 (247)
51 PRK13942 protein-L-isoaspartat 99.4 1.3E-12 2.9E-17 126.6 13.7 119 315-463 56-174 (212)
52 PRK14966 unknown domain/N5-glu 99.4 2.1E-12 4.5E-17 135.0 15.9 163 315-484 230-396 (423)
53 PRK08287 cobalt-precorrin-6Y C 99.4 2.3E-12 4.9E-17 122.3 14.9 134 319-485 15-148 (187)
54 PLN02781 Probable caffeoyl-CoA 99.4 2.8E-12 6E-17 126.1 15.3 120 324-468 57-181 (234)
55 PRK15001 SAM-dependent 23S rib 99.4 2.3E-12 5.1E-17 134.2 15.1 127 321-467 214-342 (378)
56 PRK09489 rsmC 16S ribosomal RN 99.4 1.8E-12 3.8E-17 134.2 13.9 129 321-472 182-310 (342)
57 COG2890 HemK Methylase of poly 99.4 4E-12 8.6E-17 128.1 15.8 165 314-488 87-257 (280)
58 PLN02476 O-methyltransferase 99.4 3.4E-12 7.4E-17 127.4 15.0 125 320-469 103-232 (278)
59 COG2813 RsmC 16S RNA G1207 met 99.4 2.8E-12 6E-17 127.6 14.2 129 321-471 144-272 (300)
60 TIGR03534 RF_mod_PrmC protein- 99.4 5.2E-12 1.1E-16 125.0 15.9 142 335-484 87-232 (251)
61 PRK14968 putative methyltransf 99.4 3.4E-12 7.5E-17 120.5 13.4 156 324-489 12-168 (188)
62 PRK00107 gidB 16S rRNA methylt 99.4 5.5E-12 1.2E-16 119.6 14.3 106 335-470 45-150 (187)
63 COG1041 Predicted DNA modifica 99.4 3.1E-12 6.7E-17 129.5 12.3 128 321-466 183-311 (347)
64 PF01170 UPF0020: Putative RNA 99.4 1E-11 2.2E-16 117.1 15.0 129 321-466 14-150 (179)
65 PRK01544 bifunctional N5-gluta 99.4 1.6E-11 3.4E-16 133.6 18.4 139 335-484 138-284 (506)
66 KOG1540 Ubiquinone biosynthesi 99.4 4.1E-12 8.8E-17 122.1 12.0 139 326-491 91-236 (296)
67 TIGR00138 gidB 16S rRNA methyl 99.4 1.2E-11 2.5E-16 116.9 14.9 125 335-493 42-168 (181)
68 TIGR02752 MenG_heptapren 2-hep 99.4 1.7E-11 3.7E-16 120.0 16.7 117 325-465 35-151 (231)
69 TIGR00091 tRNA (guanine-N(7)-) 99.3 7.2E-12 1.6E-16 119.7 12.3 139 335-492 16-156 (194)
70 COG2230 Cfa Cyclopropane fatty 99.3 1E-11 2.3E-16 123.3 13.6 140 323-489 60-201 (283)
71 PLN02233 ubiquinone biosynthes 99.3 1E-11 2.2E-16 124.2 13.5 120 326-469 64-186 (261)
72 PF01135 PCMT: Protein-L-isoas 99.3 3.9E-12 8.5E-17 122.5 9.7 119 315-463 52-170 (209)
73 COG2518 Pcm Protein-L-isoaspar 99.3 9.1E-12 2E-16 118.1 11.6 119 314-465 51-169 (209)
74 TIGR02085 meth_trns_rumB 23S r 99.3 1.7E-11 3.7E-16 128.7 15.0 85 330-418 228-312 (374)
75 PRK00121 trmB tRNA (guanine-N( 99.3 6.6E-12 1.4E-16 120.7 10.9 116 335-466 40-157 (202)
76 COG4122 Predicted O-methyltran 99.3 2.7E-11 5.9E-16 116.5 14.6 124 321-469 45-170 (219)
77 PRK00312 pcm protein-L-isoaspa 99.3 2.3E-11 5.1E-16 117.7 14.1 119 315-466 58-176 (212)
78 PF05958 tRNA_U5-meth_tr: tRNA 99.3 1.2E-11 2.5E-16 128.9 12.6 150 326-527 188-352 (352)
79 COG2263 Predicted RNA methylas 99.3 4.1E-11 8.8E-16 111.0 14.7 119 332-485 42-160 (198)
80 PRK10909 rsmD 16S rRNA m(2)G96 99.3 1.9E-11 4E-16 117.0 12.5 80 334-416 52-131 (199)
81 PRK13168 rumA 23S rRNA m(5)U19 99.3 1.4E-11 3E-16 132.4 12.9 88 327-418 289-379 (443)
82 PF01596 Methyltransf_3: O-met 99.3 1.4E-11 2.9E-16 118.4 11.4 141 325-490 35-191 (205)
83 PLN02244 tocopherol O-methyltr 99.3 1.2E-11 2.7E-16 128.2 12.0 109 334-467 117-225 (340)
84 PRK11036 putative S-adenosyl-L 99.3 1.9E-11 4.2E-16 121.7 12.8 109 334-467 43-151 (255)
85 PF09445 Methyltransf_15: RNA 99.3 1.6E-11 3.6E-16 112.8 11.0 110 337-456 1-113 (163)
86 PF02475 Met_10: Met-10+ like- 99.3 7.5E-12 1.6E-16 119.4 8.8 102 333-463 99-200 (200)
87 KOG2904 Predicted methyltransf 99.3 6.7E-11 1.4E-15 114.7 15.3 148 335-485 148-303 (328)
88 PTZ00146 fibrillarin; Provisio 99.3 2.9E-11 6.2E-16 121.0 13.2 107 331-464 128-236 (293)
89 PRK11188 rrmJ 23S rRNA methylt 99.3 4.5E-11 9.8E-16 115.5 14.1 109 333-465 49-165 (209)
90 TIGR00406 prmA ribosomal prote 99.3 4E-11 8.7E-16 121.6 14.3 135 322-491 144-280 (288)
91 PRK11207 tellurite resistance 99.3 4.8E-11 1E-15 114.3 14.0 115 324-464 19-133 (197)
92 COG2265 TrmA SAM-dependent met 99.3 1.8E-11 3.9E-16 129.8 11.9 91 326-420 284-376 (432)
93 PF02353 CMAS: Mycolic acid cy 99.3 1.5E-11 3.3E-16 123.3 10.7 122 323-470 50-171 (273)
94 PF03602 Cons_hypoth95: Conser 99.3 9.3E-12 2E-16 117.6 8.5 107 335-465 42-153 (183)
95 COG2264 PrmA Ribosomal protein 99.3 5.5E-11 1.2E-15 119.0 14.3 139 321-492 146-286 (300)
96 TIGR00479 rumA 23S rRNA (uraci 99.3 2.9E-11 6.3E-16 129.6 13.2 88 327-418 284-374 (431)
97 COG2227 UbiG 2-polyprenyl-3-me 99.3 1.2E-11 2.5E-16 119.0 8.9 109 334-470 58-166 (243)
98 PRK05031 tRNA (uracil-5-)-meth 99.3 3.8E-11 8.2E-16 125.6 13.0 78 337-418 208-300 (362)
99 TIGR00477 tehB tellurite resis 99.3 4.8E-11 1E-15 114.2 12.5 114 325-465 20-133 (195)
100 PRK14121 tRNA (guanine-N(7)-)- 99.3 5.2E-11 1.1E-15 123.8 13.2 122 330-469 117-239 (390)
101 PRK11873 arsM arsenite S-adeno 99.3 1.1E-10 2.4E-15 117.3 15.3 112 331-466 73-184 (272)
102 TIGR00438 rrmJ cell division p 99.2 1.2E-10 2.6E-15 110.6 14.6 111 331-464 28-145 (188)
103 PLN02672 methionine S-methyltr 99.2 5.3E-11 1.2E-15 137.2 14.3 149 336-489 119-298 (1082)
104 COG0742 N6-adenine-specific me 99.2 6.6E-11 1.4E-15 110.6 12.0 108 334-463 42-152 (187)
105 TIGR02143 trmA_only tRNA (urac 99.2 8.8E-11 1.9E-15 122.3 13.5 78 337-418 199-291 (353)
106 PRK13943 protein-L-isoaspartat 99.2 1.1E-10 2.3E-15 119.7 13.8 109 326-464 71-179 (322)
107 PRK15451 tRNA cmo(5)U34 methyl 99.2 1.1E-10 2.3E-15 116.0 13.1 112 333-467 54-166 (247)
108 PLN02396 hexaprenyldihydroxybe 99.2 6.5E-11 1.4E-15 121.3 11.9 109 333-467 129-237 (322)
109 PHA03411 putative methyltransf 99.2 2.5E-10 5.5E-15 113.1 15.4 148 332-491 61-211 (279)
110 PF06325 PrmA: Ribosomal prote 99.2 4.5E-11 9.9E-16 120.6 10.4 134 321-491 145-280 (295)
111 TIGR00095 RNA methyltransferas 99.2 9.6E-11 2.1E-15 111.4 11.4 81 335-417 49-132 (189)
112 PHA03412 putative methyltransf 99.2 5E-11 1.1E-15 115.5 9.2 151 314-484 30-193 (241)
113 PRK00517 prmA ribosomal protei 99.2 2.8E-10 6.1E-15 113.1 14.9 119 333-491 117-235 (250)
114 TIGR00452 methyltransferase, p 99.2 4.5E-10 9.8E-15 114.7 16.4 116 328-469 114-229 (314)
115 KOG1271 Methyltransferases [Ge 99.2 1.1E-10 2.4E-15 106.9 10.6 120 337-477 69-193 (227)
116 PRK04338 N(2),N(2)-dimethylgua 99.2 2E-10 4.4E-15 120.4 12.8 114 324-467 45-159 (382)
117 PLN02589 caffeoyl-CoA O-methyl 99.2 3.1E-10 6.7E-15 112.0 13.2 121 322-467 66-192 (247)
118 TIGR00308 TRM1 tRNA(guanine-26 99.2 1.6E-10 3.6E-15 120.5 11.3 103 337-467 46-148 (374)
119 KOG1270 Methyltransferases [Co 99.2 1.2E-10 2.5E-15 112.9 9.2 106 333-467 87-197 (282)
120 PRK01683 trans-aconitate 2-met 99.1 5.6E-10 1.2E-14 111.3 14.4 116 319-465 15-130 (258)
121 TIGR00740 methyltransferase, p 99.1 7E-10 1.5E-14 109.4 14.4 110 334-466 52-162 (239)
122 PRK14103 trans-aconitate 2-met 99.1 2.6E-10 5.6E-15 113.7 11.3 105 327-464 21-125 (255)
123 PLN03075 nicotianamine synthas 99.1 5.8E-10 1.3E-14 112.1 13.7 110 335-466 123-234 (296)
124 PF02384 N6_Mtase: N-6 DNA Met 99.1 5.4E-11 1.2E-15 122.0 6.5 167 314-483 25-203 (311)
125 COG2520 Predicted methyltransf 99.1 4E-10 8.7E-15 115.1 12.1 122 334-484 187-311 (341)
126 PRK08317 hypothetical protein; 99.1 6.1E-10 1.3E-14 108.8 12.9 116 327-467 11-126 (241)
127 PRK04457 spermidine synthase; 99.1 1.6E-09 3.4E-14 108.4 15.9 115 334-467 65-179 (262)
128 PRK10258 biotin biosynthesis p 99.1 2.4E-10 5.2E-15 113.5 9.8 117 319-467 26-142 (251)
129 PTZ00098 phosphoethanolamine N 99.1 6.1E-10 1.3E-14 111.5 12.2 129 312-466 28-157 (263)
130 PF08241 Methyltransf_11: Meth 99.1 7.2E-11 1.6E-15 98.0 4.5 95 340-463 1-95 (95)
131 PF13649 Methyltransf_25: Meth 99.1 2.5E-10 5.3E-15 97.1 7.8 99 339-459 1-101 (101)
132 PLN02336 phosphoethanolamine N 99.1 6.7E-10 1.5E-14 120.5 12.6 117 325-468 256-372 (475)
133 smart00828 PKS_MT Methyltransf 99.1 8.4E-10 1.8E-14 107.5 12.1 105 337-466 1-105 (224)
134 KOG2915 tRNA(1-methyladenosine 99.1 3E-09 6.5E-14 103.3 15.4 125 317-471 87-212 (314)
135 PRK15068 tRNA mo(5)U34 methylt 99.1 7.7E-10 1.7E-14 113.9 12.0 115 326-466 113-227 (322)
136 PRK00216 ubiE ubiquinone/menaq 99.1 1.5E-09 3.2E-14 106.3 13.3 119 327-468 43-161 (239)
137 PRK12335 tellurite resistance 99.1 1.3E-09 2.9E-14 110.5 13.2 103 335-464 120-222 (287)
138 PRK11705 cyclopropane fatty ac 99.0 1.7E-09 3.7E-14 113.8 13.5 114 324-467 156-269 (383)
139 PF03848 TehB: Tellurite resis 99.0 1.6E-09 3.6E-14 102.4 11.9 111 328-465 23-133 (192)
140 TIGR02021 BchM-ChlM magnesium 99.0 1.1E-09 2.5E-14 106.4 11.2 73 333-412 53-125 (219)
141 TIGR02716 C20_methyl_CrtF C-20 99.0 3.1E-09 6.8E-14 108.7 14.8 125 323-472 137-261 (306)
142 COG0116 Predicted N6-adenine-s 99.0 2.8E-09 6E-14 109.7 13.9 141 310-465 160-344 (381)
143 PRK06922 hypothetical protein; 99.0 3.8E-09 8.3E-14 115.4 14.8 127 330-469 413-541 (677)
144 PRK00811 spermidine synthase; 99.0 4.1E-09 8.8E-14 106.7 14.1 114 335-467 76-193 (283)
145 cd02440 AdoMet_MTases S-adenos 99.0 3.2E-09 6.9E-14 88.1 11.0 103 338-464 1-103 (107)
146 smart00650 rADc Ribosomal RNA 99.0 3.8E-09 8.2E-14 98.6 12.2 84 326-416 4-87 (169)
147 COG0293 FtsJ 23S rRNA methylas 99.0 5.2E-09 1.1E-13 99.3 11.8 126 333-484 43-175 (205)
148 PF05401 NodS: Nodulation prot 99.0 1.3E-09 2.7E-14 102.4 7.2 139 318-484 26-171 (201)
149 PRK05134 bifunctional 3-demeth 98.9 1.2E-08 2.6E-13 100.0 13.9 117 325-468 38-154 (233)
150 TIGR00417 speE spermidine synt 98.9 1.2E-08 2.5E-13 102.7 13.9 115 336-469 73-190 (270)
151 TIGR03840 TMPT_Se_Te thiopurin 98.9 1.4E-08 3E-13 98.4 13.1 109 334-468 33-155 (213)
152 TIGR01934 MenG_MenH_UbiE ubiqu 98.9 2E-08 4.3E-13 97.2 14.1 116 327-468 31-146 (223)
153 KOG1663 O-methyltransferase [S 98.9 9.7E-09 2.1E-13 98.0 11.2 122 321-467 59-185 (237)
154 PRK03612 spermidine synthase; 98.9 7.4E-09 1.6E-13 113.3 11.8 133 334-484 296-435 (521)
155 TIGR01983 UbiG ubiquinone bios 98.9 1.3E-08 2.8E-13 99.1 12.2 107 335-467 45-151 (224)
156 PF02390 Methyltransf_4: Putat 98.9 7E-09 1.5E-13 99.1 9.7 134 338-490 20-156 (195)
157 PRK01581 speE spermidine synth 98.9 3.2E-08 6.9E-13 101.9 14.8 114 336-467 151-270 (374)
158 PF08242 Methyltransf_12: Meth 98.9 3.5E-10 7.5E-15 95.6 0.4 98 340-461 1-99 (99)
159 PLN02336 phosphoethanolamine N 98.9 1.4E-08 3E-13 110.3 12.9 119 324-468 26-145 (475)
160 TIGR03438 probable methyltrans 98.9 2.1E-08 4.6E-13 102.4 13.4 114 334-468 62-180 (301)
161 PTZ00338 dimethyladenosine tra 98.9 1.1E-08 2.3E-13 103.9 10.5 94 319-418 20-113 (294)
162 TIGR02072 BioC biotin biosynth 98.9 1E-08 2.2E-13 100.2 10.1 118 319-465 15-135 (240)
163 PRK11727 23S rRNA mA1618 methy 98.9 1.6E-08 3.5E-13 103.4 11.6 85 335-420 114-203 (321)
164 COG0220 Predicted S-adenosylme 98.9 1.1E-08 2.3E-13 99.7 9.7 114 337-466 50-165 (227)
165 PLN02366 spermidine synthase 98.8 4.1E-08 8.9E-13 100.2 13.7 113 335-466 91-207 (308)
166 PLN02490 MPBQ/MSBQ methyltrans 98.8 1.5E-08 3.2E-13 104.5 10.0 103 334-464 112-214 (340)
167 KOG2187 tRNA uracil-5-methyltr 98.8 7.9E-09 1.7E-13 108.7 8.1 116 327-471 375-495 (534)
168 KOG4589 Cell division protein 98.8 5.3E-08 1.1E-12 89.7 12.2 125 334-484 68-200 (232)
169 PRK00050 16S rRNA m(4)C1402 me 98.8 1.3E-08 2.9E-13 102.7 9.0 90 327-419 11-103 (296)
170 COG2521 Predicted archaeal met 98.8 5.4E-09 1.2E-13 99.5 5.6 115 328-463 127-243 (287)
171 COG4106 Tam Trans-aconitate me 98.8 1.8E-08 3.9E-13 95.0 8.9 112 321-464 17-128 (257)
172 PF08003 Methyltransf_9: Prote 98.8 6.4E-07 1.4E-11 89.6 20.4 200 229-472 17-226 (315)
173 PRK13255 thiopurine S-methyltr 98.8 3.9E-08 8.4E-13 95.7 11.4 110 332-467 34-157 (218)
174 KOG2730 Methylase [General fun 98.8 4.7E-09 1E-13 99.0 4.7 109 313-424 70-183 (263)
175 PRK11088 rrmA 23S rRNA methylt 98.8 4.1E-08 8.9E-13 98.8 11.5 96 334-465 84-181 (272)
176 smart00138 MeTrc Methyltransfe 98.8 4.5E-08 9.8E-13 98.1 11.2 112 334-466 98-243 (264)
177 PRK11783 rlmL 23S rRNA m(2)G24 98.7 1.1E-07 2.5E-12 107.6 14.9 89 329-417 183-314 (702)
178 PF01728 FtsJ: FtsJ-like methy 98.7 1.4E-08 2.9E-13 95.9 6.3 107 335-466 23-140 (181)
179 PRK14896 ksgA 16S ribosomal RN 98.7 3.6E-08 7.9E-13 98.4 9.6 90 319-417 13-102 (258)
180 TIGR02987 met_A_Alw26 type II 98.7 9.3E-08 2E-12 105.1 13.5 170 314-484 3-216 (524)
181 PRK00274 ksgA 16S ribosomal RN 98.7 3.5E-08 7.7E-13 99.3 8.9 89 321-417 28-116 (272)
182 PRK10742 putative methyltransf 98.7 8.1E-08 1.8E-12 93.8 9.9 91 324-417 75-175 (250)
183 PLN02823 spermine synthase 98.7 6E-07 1.3E-11 92.7 16.8 114 336-467 104-222 (336)
184 KOG3191 Predicted N6-DNA-methy 98.7 2.1E-07 4.6E-12 85.6 11.6 138 336-484 44-184 (209)
185 COG0286 HsdM Type I restrictio 98.7 7.9E-08 1.7E-12 104.3 10.2 170 314-483 165-346 (489)
186 PRK07580 Mg-protoporphyrin IX 98.7 2.2E-07 4.8E-12 90.7 12.1 73 334-413 62-134 (230)
187 PF13489 Methyltransf_23: Meth 98.6 4.2E-08 9.1E-13 89.7 6.1 108 324-468 10-118 (161)
188 PRK06202 hypothetical protein; 98.6 3.1E-07 6.7E-12 90.1 12.5 78 331-413 56-136 (232)
189 TIGR03587 Pse_Me-ase pseudamin 98.6 2.6E-07 5.7E-12 89.0 11.6 128 333-491 41-180 (204)
190 KOG2671 Putative RNA methylase 98.6 3.4E-08 7.4E-13 98.8 4.9 161 323-490 196-375 (421)
191 KOG1541 Predicted protein carb 98.6 4.7E-07 1E-11 85.8 10.8 141 315-483 28-174 (270)
192 PF01269 Fibrillarin: Fibrilla 98.6 6E-07 1.3E-11 85.9 11.7 114 324-465 56-178 (229)
193 KOG3420 Predicted RNA methylas 98.6 7.9E-08 1.7E-12 85.1 5.1 78 334-416 47-124 (185)
194 PRK01544 bifunctional N5-gluta 98.5 6.3E-07 1.4E-11 97.8 12.8 137 335-490 347-484 (506)
195 PRK05785 hypothetical protein; 98.5 2.6E-07 5.7E-12 90.4 8.3 91 335-459 51-141 (226)
196 KOG2899 Predicted methyltransf 98.5 1.1E-06 2.4E-11 84.3 11.5 46 336-382 59-104 (288)
197 TIGR00755 ksgA dimethyladenosi 98.5 1.1E-06 2.4E-11 87.6 11.4 85 323-416 17-104 (253)
198 PF07021 MetW: Methionine bios 98.4 1.7E-06 3.7E-11 81.3 10.8 75 326-412 6-81 (193)
199 KOG1499 Protein arginine N-met 98.4 1.1E-06 2.4E-11 89.1 10.1 112 335-469 60-171 (346)
200 KOG1661 Protein-L-isoaspartate 98.4 1.2E-06 2.7E-11 82.4 9.3 109 327-464 72-192 (237)
201 PF05185 PRMT5: PRMT5 arginine 98.4 6.3E-07 1.4E-11 96.0 8.2 110 336-467 187-299 (448)
202 PF12147 Methyltransf_20: Puta 98.4 6.5E-06 1.4E-10 81.6 14.6 130 336-486 136-268 (311)
203 COG4076 Predicted RNA methylas 98.4 4.1E-07 8.9E-12 84.0 5.5 99 337-462 34-132 (252)
204 PF01564 Spermine_synth: Sperm 98.4 6.3E-06 1.4E-10 81.7 13.8 130 335-483 76-210 (246)
205 PLN02585 magnesium protoporphy 98.4 1.4E-06 3.1E-11 89.2 9.2 71 335-412 144-218 (315)
206 COG0030 KsgA Dimethyladenosine 98.4 2E-06 4.3E-11 85.0 9.8 89 324-418 19-107 (259)
207 PF02005 TRM: N2,N2-dimethylgu 98.3 7.6E-07 1.7E-11 93.3 6.9 105 336-467 50-155 (377)
208 PRK13256 thiopurine S-methyltr 98.3 3.7E-06 8E-11 81.9 11.2 112 333-468 41-166 (226)
209 PF13578 Methyltransf_24: Meth 98.3 1.7E-07 3.6E-12 80.3 1.0 103 340-466 1-106 (106)
210 COG4976 Predicted methyltransf 98.3 6.2E-07 1.3E-11 85.4 4.4 108 332-470 122-230 (287)
211 KOG4300 Predicted methyltransf 98.3 2.7E-06 5.8E-11 80.0 8.2 103 337-465 78-182 (252)
212 COG0421 SpeE Spermidine syntha 98.3 5.5E-06 1.2E-10 83.3 11.0 120 327-467 69-192 (282)
213 COG0275 Predicted S-adenosylme 98.3 3.2E-05 7E-10 77.1 16.1 90 327-418 15-108 (314)
214 PF01861 DUF43: Protein of unk 98.3 5.9E-06 1.3E-10 80.2 10.7 129 335-491 44-175 (243)
215 PF03291 Pox_MCEL: mRNA cappin 98.3 3.5E-06 7.5E-11 86.9 9.8 110 335-465 62-186 (331)
216 COG3963 Phospholipid N-methylt 98.3 1E-05 2.3E-10 73.7 11.5 119 323-467 36-158 (194)
217 KOG1596 Fibrillarin and relate 98.2 5.3E-06 1.1E-10 79.5 9.6 124 332-483 153-282 (317)
218 PF10294 Methyltransf_16: Puta 98.2 2.2E-06 4.8E-11 80.4 6.9 111 333-469 43-159 (173)
219 COG1889 NOP1 Fibrillarin-like 98.2 1.7E-05 3.7E-10 74.5 11.9 130 332-490 73-210 (231)
220 KOG0820 Ribosomal RNA adenine 98.2 7E-06 1.5E-10 80.3 8.8 129 325-469 48-180 (315)
221 KOG1500 Protein arginine N-met 98.2 1.1E-05 2.3E-10 80.8 10.3 103 335-462 177-279 (517)
222 PF05724 TPMT: Thiopurine S-me 98.2 5.2E-06 1.1E-10 80.7 7.8 137 331-492 33-188 (218)
223 KOG1253 tRNA methyltransferase 98.2 1.5E-06 3.2E-11 91.3 4.1 107 334-467 108-217 (525)
224 PF02527 GidB: rRNA small subu 98.1 1.2E-05 2.6E-10 76.0 9.7 99 338-466 51-149 (184)
225 KOG1099 SAM-dependent methyltr 98.1 5.6E-06 1.2E-10 78.8 7.1 113 337-477 43-172 (294)
226 TIGR02081 metW methionine bios 98.1 9.8E-06 2.1E-10 77.3 8.9 72 334-415 12-84 (194)
227 TIGR00006 S-adenosyl-methyltra 98.1 1.2E-05 2.5E-10 81.7 9.6 90 327-419 12-105 (305)
228 PF04816 DUF633: Family of unk 98.1 2.5E-05 5.5E-10 75.1 11.5 121 339-491 1-121 (205)
229 PF00891 Methyltransf_2: O-met 98.1 2.3E-05 5.1E-10 77.3 11.5 115 326-473 91-207 (241)
230 KOG1975 mRNA cap methyltransfe 98.1 1.2E-05 2.5E-10 80.4 9.1 116 324-462 108-234 (389)
231 PRK04148 hypothetical protein; 98.1 4.5E-05 9.9E-10 67.9 11.1 76 326-412 7-83 (134)
232 COG0357 GidB Predicted S-adeno 98.0 4.7E-05 1E-09 73.4 11.0 98 336-462 68-165 (215)
233 KOG3010 Methyltransferase [Gen 98.0 1.6E-05 3.4E-10 76.7 7.4 130 326-482 23-157 (261)
234 PF06962 rRNA_methylase: Putat 98.0 3.1E-05 6.7E-10 69.4 8.4 116 362-490 1-121 (140)
235 COG1867 TRM1 N2,N2-dimethylgua 97.9 4.1E-05 8.9E-10 78.3 8.6 103 336-467 53-155 (380)
236 TIGR00478 tly hemolysin TlyA f 97.9 5.5E-05 1.2E-09 74.0 8.6 40 334-375 74-113 (228)
237 PLN02232 ubiquinone biosynthes 97.8 5.4E-05 1.2E-09 70.0 8.1 82 364-468 1-84 (160)
238 PF00398 RrnaAD: Ribosomal RNA 97.8 4.8E-05 1E-09 76.2 7.9 88 323-416 18-107 (262)
239 PF08123 DOT1: Histone methyla 97.8 0.00016 3.5E-09 69.6 11.0 120 328-472 35-164 (205)
240 PF06080 DUF938: Protein of un 97.8 0.00029 6.2E-09 67.3 11.9 144 325-491 16-172 (204)
241 PF05219 DREV: DREV methyltran 97.8 0.00011 2.4E-09 72.2 9.2 93 336-464 95-187 (265)
242 PRK11760 putative 23S rRNA C24 97.8 0.00017 3.8E-09 73.7 11.0 72 333-416 209-280 (357)
243 PF05971 Methyltransf_10: Prot 97.8 0.0001 2.2E-09 74.4 9.0 146 336-485 103-274 (299)
244 PF04989 CmcI: Cephalosporin h 97.7 7.6E-05 1.6E-09 71.3 6.9 152 314-491 10-187 (206)
245 KOG2361 Predicted methyltransf 97.7 8.1E-05 1.8E-09 71.9 6.8 107 338-467 74-185 (264)
246 PRK00536 speE spermidine synth 97.6 0.0011 2.3E-08 66.2 14.0 104 331-469 69-175 (262)
247 TIGR00497 hsdM type I restrict 97.6 0.00022 4.7E-09 78.1 10.1 150 313-462 193-352 (501)
248 cd00315 Cyt_C5_DNA_methylase C 97.6 8.2E-05 1.8E-09 75.1 6.2 78 338-424 2-80 (275)
249 COG4262 Predicted spermidine s 97.6 0.00082 1.8E-08 68.5 12.9 155 334-509 288-449 (508)
250 PRK10611 chemotaxis methyltran 97.6 0.00012 2.6E-09 74.0 6.9 109 337-465 117-262 (287)
251 COG3897 Predicted methyltransf 97.6 7E-05 1.5E-09 70.1 4.5 70 335-412 79-148 (218)
252 KOG1098 Putative SAM-dependent 97.6 0.00011 2.3E-09 79.1 6.2 108 333-463 42-156 (780)
253 TIGR03439 methyl_EasF probable 97.6 0.00089 1.9E-08 68.8 12.7 112 334-464 75-196 (319)
254 PF01795 Methyltransf_5: MraW 97.5 7.4E-05 1.6E-09 75.8 3.9 89 327-418 12-105 (310)
255 TIGR01444 fkbM_fam methyltrans 97.5 0.00033 7.1E-09 63.0 7.5 59 338-398 1-59 (143)
256 PF11599 AviRa: RRNA methyltra 97.5 0.0027 5.7E-08 60.5 13.3 127 322-463 35-212 (246)
257 PF05891 Methyltransf_PK: AdoM 97.4 0.0004 8.6E-09 66.7 6.9 104 336-463 56-159 (218)
258 COG2384 Predicted SAM-dependen 97.4 0.0025 5.3E-08 61.2 11.9 124 335-490 16-139 (226)
259 PF13679 Methyltransf_32: Meth 97.4 0.0019 4.2E-08 58.3 10.8 81 334-416 24-109 (141)
260 PF04445 SAM_MT: Putative SAM- 97.3 0.00051 1.1E-08 67.0 7.2 90 324-416 62-161 (234)
261 PF01739 CheR: CheR methyltran 97.3 0.00032 6.9E-09 67.1 5.1 109 337-466 33-176 (196)
262 COG1189 Predicted rRNA methyla 97.3 0.00048 1E-08 66.7 5.9 96 335-462 79-175 (245)
263 KOG1227 Putative methyltransfe 97.2 0.00018 4E-09 71.4 2.2 75 335-413 194-269 (351)
264 KOG3115 Methyltransferase-like 97.2 0.0013 2.8E-08 62.0 7.5 136 337-491 62-206 (249)
265 COG1352 CheR Methylase of chem 97.1 0.0013 2.9E-08 65.7 7.6 107 337-464 98-240 (268)
266 PF03059 NAS: Nicotianamine sy 97.1 0.0057 1.2E-07 61.3 11.6 107 337-465 122-230 (276)
267 PF00145 DNA_methylase: C-5 cy 96.9 0.0017 3.7E-08 66.5 6.4 77 338-424 2-79 (335)
268 COG0500 SmtA SAM-dependent met 96.8 0.013 2.9E-07 50.8 10.8 108 339-471 52-161 (257)
269 PF10354 DUF2431: Domain of un 96.7 0.03 6.5E-07 52.1 12.7 137 345-492 6-150 (166)
270 KOG1709 Guanidinoacetate methy 96.6 0.016 3.5E-07 55.3 10.1 106 334-465 100-206 (271)
271 KOG0024 Sorbitol dehydrogenase 96.5 0.013 2.8E-07 59.3 9.3 121 312-467 146-275 (354)
272 PF05148 Methyltransf_8: Hypot 96.5 0.005 1.1E-07 58.8 5.8 110 335-491 72-182 (219)
273 PF09243 Rsm22: Mitochondrial 96.4 0.013 2.7E-07 59.2 8.6 48 336-383 34-81 (274)
274 COG1568 Predicted methyltransf 96.4 0.016 3.4E-07 57.3 8.6 98 335-458 152-250 (354)
275 TIGR00675 dcm DNA-methyltransf 96.3 0.0054 1.2E-07 63.2 5.6 78 339-425 1-78 (315)
276 KOG2078 tRNA modification enzy 96.2 0.0017 3.7E-08 67.5 1.2 66 333-401 247-313 (495)
277 PF03141 Methyltransf_29: Puta 96.2 0.0094 2E-07 63.7 6.6 101 338-469 120-223 (506)
278 COG4798 Predicted methyltransf 96.2 0.09 1.9E-06 49.6 12.0 41 330-370 43-83 (238)
279 KOG1501 Arginine N-methyltrans 96.1 0.01 2.3E-07 61.8 6.3 60 338-399 69-128 (636)
280 KOG1269 SAM-dependent methyltr 96.0 0.017 3.8E-07 60.3 7.6 106 331-462 106-212 (364)
281 PHA01634 hypothetical protein 96.0 0.035 7.6E-07 48.7 7.7 72 335-413 28-99 (156)
282 KOG3178 Hydroxyindole-O-methyl 96.0 0.051 1.1E-06 55.8 10.2 101 337-469 179-279 (342)
283 PRK01747 mnmC bifunctional tRN 95.9 0.026 5.7E-07 64.1 8.8 129 337-492 59-225 (662)
284 PF01234 NNMT_PNMT_TEMT: NNMT/ 95.9 0.015 3.3E-07 57.8 5.9 156 335-526 56-256 (256)
285 COG0270 Dcm Site-specific DNA 95.9 0.016 3.5E-07 60.0 6.3 81 337-425 4-86 (328)
286 PF10237 N6-adenineMlase: Prob 95.8 0.19 4E-06 46.6 12.5 126 317-481 5-135 (162)
287 KOG3045 Predicted RNA methylas 95.8 0.028 6.1E-07 55.1 7.1 94 327-467 171-266 (325)
288 PRK11524 putative methyltransf 95.5 0.023 4.9E-07 57.6 5.9 46 334-382 207-252 (284)
289 PF07279 DUF1442: Protein of u 95.4 0.31 6.6E-06 46.9 12.5 92 320-413 26-122 (218)
290 PRK10458 DNA cytosine methylas 95.3 0.072 1.6E-06 57.6 9.2 83 336-423 88-186 (467)
291 PRK11524 putative methyltransf 95.2 0.042 9E-07 55.7 6.6 72 389-467 9-81 (284)
292 COG1064 AdhP Zn-dependent alco 95.2 0.1 2.2E-06 53.9 9.4 96 331-464 162-258 (339)
293 PF01555 N6_N4_Mtase: DNA meth 95.2 0.031 6.7E-07 53.7 5.4 43 333-378 189-231 (231)
294 COG3129 Predicted SAM-dependen 94.9 0.04 8.6E-07 53.2 5.0 83 335-418 78-165 (292)
295 PRK13699 putative methylase; P 94.8 0.056 1.2E-06 52.9 6.1 49 333-384 161-209 (227)
296 PRK09880 L-idonate 5-dehydroge 94.7 0.28 6.1E-06 50.7 11.4 101 332-466 166-267 (343)
297 KOG0822 Protein kinase inhibit 94.4 0.057 1.2E-06 57.9 5.1 103 338-462 370-475 (649)
298 PF07942 N2227: N2227-like pro 94.2 0.41 9E-06 48.0 10.7 41 335-378 56-96 (270)
299 KOG2782 Putative SAM dependent 94.2 0.031 6.7E-07 53.4 2.4 92 327-420 35-132 (303)
300 KOG2940 Predicted methyltransf 94.1 0.061 1.3E-06 51.9 4.2 107 336-473 73-179 (325)
301 PF00107 ADH_zinc_N: Zinc-bind 94.1 0.054 1.2E-06 47.4 3.7 90 345-468 1-92 (130)
302 KOG3987 Uncharacterized conser 93.9 0.012 2.7E-07 55.6 -0.7 92 336-463 113-205 (288)
303 COG1063 Tdh Threonine dehydrog 93.8 0.22 4.7E-06 52.1 8.3 102 333-467 166-271 (350)
304 PF07091 FmrO: Ribosomal RNA m 93.7 0.17 3.6E-06 49.9 6.7 72 336-412 106-177 (251)
305 PF05711 TylF: Macrocin-O-meth 93.6 0.5 1.1E-05 46.9 9.9 124 335-485 75-230 (248)
306 PRK13699 putative methylase; P 93.5 0.098 2.1E-06 51.2 4.7 73 389-469 2-75 (227)
307 COG3510 CmcI Cephalosporin hyd 93.3 0.42 9E-06 45.1 8.2 128 335-491 69-218 (237)
308 KOG1562 Spermidine synthase [A 92.9 0.34 7.4E-06 48.6 7.4 109 336-463 122-234 (337)
309 cd08237 ribitol-5-phosphate_DH 92.8 0.51 1.1E-05 48.9 9.1 96 332-465 160-256 (341)
310 COG5459 Predicted rRNA methyla 92.7 0.13 2.8E-06 52.7 4.1 107 337-465 115-225 (484)
311 cd08254 hydroxyacyl_CoA_DH 6-h 92.2 1.1 2.3E-05 45.8 10.5 100 331-464 161-262 (338)
312 PRK07576 short chain dehydroge 92.2 2.4 5.3E-05 41.9 12.8 78 335-415 8-95 (264)
313 cd08283 FDH_like_1 Glutathione 92.1 0.81 1.8E-05 48.3 9.7 50 329-379 178-228 (386)
314 KOG4058 Uncharacterized conser 91.6 0.29 6.4E-06 44.1 4.6 71 328-400 65-135 (199)
315 PF04672 Methyltransf_19: S-ad 91.4 1.5 3.2E-05 43.9 10.0 112 337-468 70-193 (267)
316 COG2933 Predicted SAM-dependen 90.9 0.51 1.1E-05 46.6 5.9 70 333-414 209-278 (358)
317 COG4301 Uncharacterized conser 90.8 5.2 0.00011 39.4 12.7 119 329-467 72-195 (321)
318 PRK06914 short chain dehydroge 90.5 4.7 0.0001 40.0 13.0 82 336-418 3-93 (280)
319 TIGR02822 adh_fam_2 zinc-bindi 90.4 2.8 6.1E-05 43.1 11.5 93 330-464 160-253 (329)
320 PRK08213 gluconate 5-dehydroge 90.3 4.2 9.1E-05 39.8 12.2 80 335-417 11-100 (259)
321 TIGR03201 dearomat_had 6-hydro 90.2 2.1 4.6E-05 44.3 10.4 50 331-386 162-212 (349)
322 KOG1331 Predicted methyltransf 90.1 0.55 1.2E-05 47.0 5.5 98 335-464 45-143 (293)
323 PF05430 Methyltransf_30: S-ad 90.1 0.21 4.6E-06 44.1 2.4 78 389-493 33-110 (124)
324 cd08230 glucose_DH Glucose deh 90.1 1.8 3.9E-05 44.9 9.8 95 333-464 170-268 (355)
325 PRK12939 short chain dehydroge 89.9 3.7 8E-05 39.7 11.4 78 335-415 6-93 (250)
326 cd08281 liver_ADH_like1 Zinc-d 89.9 2.1 4.5E-05 44.8 10.1 102 330-464 186-289 (371)
327 KOG2798 Putative trehalase [Ca 89.6 2.9 6.2E-05 42.6 10.1 39 336-377 151-189 (369)
328 PRK10309 galactitol-1-phosphat 89.6 2.7 5.9E-05 43.3 10.7 103 330-464 155-259 (347)
329 COG2961 ComJ Protein involved 89.5 5.6 0.00012 39.2 11.7 121 334-485 88-211 (279)
330 PRK07063 short chain dehydroge 89.5 6.7 0.00015 38.4 13.0 79 336-415 7-95 (260)
331 PLN03154 putative allyl alcoho 89.5 2.4 5.1E-05 44.1 10.2 100 330-463 153-256 (348)
332 KOG2352 Predicted spermine/spe 89.5 0.69 1.5E-05 49.6 6.0 130 336-480 296-431 (482)
333 PRK07533 enoyl-(acyl carrier p 89.2 5.2 0.00011 39.4 12.0 78 335-415 9-97 (258)
334 PRK06940 short chain dehydroge 89.2 5.2 0.00011 39.9 12.0 76 337-416 3-86 (275)
335 TIGR03366 HpnZ_proposed putati 89.1 3.6 7.8E-05 41.2 10.8 99 331-464 116-217 (280)
336 PF03721 UDPG_MGDP_dh_N: UDP-g 88.8 1.5 3.2E-05 41.5 7.3 120 345-485 7-139 (185)
337 PRK08594 enoyl-(acyl carrier p 88.7 6.2 0.00014 38.9 12.1 127 335-465 6-147 (257)
338 PRK08339 short chain dehydroge 88.4 9.1 0.0002 37.8 13.1 79 335-415 7-94 (263)
339 PRK07326 short chain dehydroge 88.4 5.6 0.00012 38.2 11.3 75 336-414 6-90 (237)
340 PF07669 Eco57I: Eco57I restri 88.4 1.1 2.4E-05 38.2 5.6 72 406-487 2-75 (106)
341 PRK05867 short chain dehydroge 88.3 6 0.00013 38.6 11.6 79 335-416 8-96 (253)
342 PRK09424 pntA NAD(P) transhydr 88.3 4.9 0.00011 44.1 11.8 48 333-386 162-210 (509)
343 TIGR03451 mycoS_dep_FDH mycoth 88.2 3.7 8E-05 42.6 10.5 103 330-465 171-276 (358)
344 PRK06949 short chain dehydroge 87.9 6.7 0.00015 38.2 11.7 79 335-416 8-96 (258)
345 TIGR02825 B4_12hDH leukotriene 87.9 3.1 6.6E-05 42.5 9.6 100 329-463 132-235 (325)
346 PRK09242 tropinone reductase; 87.8 11 0.00025 36.7 13.3 79 336-415 9-97 (257)
347 PRK07523 gluconate 5-dehydroge 87.6 8.9 0.00019 37.4 12.3 79 335-416 9-97 (255)
348 PRK07062 short chain dehydroge 87.5 13 0.00027 36.6 13.5 81 335-416 7-97 (265)
349 PRK07831 short chain dehydroge 87.5 9.2 0.0002 37.5 12.5 81 335-416 16-107 (262)
350 KOG1197 Predicted quinone oxid 87.5 3.1 6.7E-05 41.2 8.5 102 327-462 138-242 (336)
351 PRK07454 short chain dehydroge 87.4 9.8 0.00021 36.7 12.4 76 336-414 6-91 (241)
352 PRK08945 putative oxoacyl-(acy 87.3 7.5 0.00016 37.7 11.6 81 334-416 10-102 (247)
353 PF11968 DUF3321: Putative met 87.2 1.2 2.6E-05 43.0 5.6 103 323-464 31-148 (219)
354 KOG3201 Uncharacterized conser 87.2 1 2.2E-05 41.4 4.8 105 336-463 30-138 (201)
355 PRK07814 short chain dehydroge 87.1 7.8 0.00017 38.1 11.7 78 335-415 9-96 (263)
356 PRK07097 gluconate 5-dehydroge 87.1 14 0.0003 36.4 13.5 80 335-417 9-98 (265)
357 PRK05599 hypothetical protein; 87.0 11 0.00024 36.8 12.6 75 338-414 2-85 (246)
358 cd08293 PTGR2 Prostaglandin re 87.0 4 8.7E-05 41.8 9.9 100 331-463 148-252 (345)
359 cd08294 leukotriene_B4_DH_like 87.0 3.5 7.7E-05 41.8 9.4 101 329-464 137-240 (329)
360 PRK07109 short chain dehydroge 87.0 12 0.00026 38.7 13.4 79 335-416 7-95 (334)
361 PRK08085 gluconate 5-dehydroge 86.9 14 0.0003 36.0 13.3 79 336-417 9-97 (254)
362 PRK06139 short chain dehydroge 86.8 8.6 0.00019 39.7 12.2 83 335-420 6-98 (330)
363 PRK08415 enoyl-(acyl carrier p 86.8 9.4 0.0002 38.1 12.2 78 336-416 5-93 (274)
364 PRK07774 short chain dehydroge 86.8 6.6 0.00014 38.0 10.9 78 336-416 6-93 (250)
365 cd08239 THR_DH_like L-threonin 86.5 5.3 0.00012 40.9 10.5 103 329-464 157-261 (339)
366 cd05188 MDR Medium chain reduc 86.5 4.6 0.0001 39.2 9.6 99 333-465 132-232 (271)
367 KOG4174 Uncharacterized conser 86.4 7.2 0.00016 38.5 10.4 120 335-464 56-189 (282)
368 PRK08324 short chain dehydroge 86.4 7.1 0.00015 44.6 12.3 124 335-465 421-557 (681)
369 PF01555 N6_N4_Mtase: DNA meth 86.4 0.48 1E-05 45.3 2.5 55 407-464 1-55 (231)
370 PRK06124 gluconate 5-dehydroge 86.2 16 0.00034 35.6 13.3 79 335-416 10-98 (256)
371 PLN02989 cinnamyl-alcohol dehy 86.2 8.1 0.00018 39.3 11.6 79 336-415 5-86 (325)
372 PTZ00357 methyltransferase; Pr 86.1 2.1 4.6E-05 47.8 7.3 76 338-413 703-799 (1072)
373 cd08278 benzyl_alcohol_DH Benz 86.1 5.9 0.00013 41.3 10.7 102 330-464 181-284 (365)
374 PRK05876 short chain dehydroge 86.1 13 0.00027 37.1 12.7 80 335-417 5-94 (275)
375 KOG2352 Predicted spermine/spe 86.0 3.8 8.2E-05 44.1 9.0 112 335-466 47-162 (482)
376 PRK05993 short chain dehydroge 85.7 9.4 0.0002 38.0 11.5 72 336-416 4-86 (277)
377 PRK12937 short chain dehydroge 85.6 17 0.00037 35.0 13.1 122 336-467 5-141 (245)
378 PRK06172 short chain dehydroge 85.6 15 0.00032 35.8 12.7 77 336-415 7-93 (253)
379 KOG2912 Predicted DNA methylas 85.3 0.79 1.7E-05 46.5 3.4 79 340-419 107-191 (419)
380 PRK08159 enoyl-(acyl carrier p 85.3 14 0.00031 36.8 12.6 123 336-465 10-148 (272)
381 PLN03209 translocon at the inn 85.3 8.4 0.00018 42.8 11.6 82 332-414 76-167 (576)
382 PRK06505 enoyl-(acyl carrier p 85.3 13 0.00029 36.9 12.4 78 335-415 6-94 (271)
383 PRK10083 putative oxidoreducta 85.3 7.3 0.00016 39.8 10.8 52 329-386 154-208 (339)
384 TIGR01202 bchC 2-desacetyl-2-h 85.2 3.8 8.3E-05 41.7 8.6 88 334-465 143-231 (308)
385 cd08238 sorbose_phosphate_red 85.0 3.6 7.7E-05 43.8 8.5 49 331-379 171-222 (410)
386 PRK12744 short chain dehydroge 85.0 13 0.00028 36.3 12.0 122 336-467 8-147 (257)
387 KOG3924 Putative protein methy 85.0 4.4 9.5E-05 42.5 8.6 131 327-482 184-329 (419)
388 PF00106 adh_short: short chai 84.9 12 0.00027 33.5 11.1 84 338-424 2-98 (167)
389 KOG2651 rRNA adenine N-6-methy 84.9 2.5 5.4E-05 44.1 6.7 54 323-378 141-194 (476)
390 PRK08862 short chain dehydroge 84.9 19 0.00042 34.8 13.0 76 336-414 5-91 (227)
391 cd08232 idonate-5-DH L-idonate 84.8 7.2 0.00016 39.8 10.4 98 332-463 162-260 (339)
392 PRK12384 sorbitol-6-phosphate 84.7 13 0.00028 36.3 11.8 80 336-416 2-91 (259)
393 PRK06603 enoyl-(acyl carrier p 84.7 16 0.00034 36.0 12.5 125 335-465 7-146 (260)
394 PRK08063 enoyl-(acyl carrier p 84.6 16 0.00034 35.3 12.4 78 336-416 4-92 (250)
395 cd08295 double_bond_reductase_ 84.5 6 0.00013 40.6 9.7 100 330-463 146-249 (338)
396 PLN02740 Alcohol dehydrogenase 84.5 8.1 0.00018 40.6 10.9 102 330-464 193-299 (381)
397 PRK06701 short chain dehydroge 84.4 16 0.00035 36.7 12.6 126 335-466 45-182 (290)
398 cd05285 sorbitol_DH Sorbitol d 84.4 8.4 0.00018 39.5 10.8 103 329-464 156-264 (343)
399 PRK07677 short chain dehydroge 84.3 17 0.00036 35.4 12.4 78 336-416 1-88 (252)
400 PRK08589 short chain dehydroge 84.2 19 0.0004 35.7 12.9 77 336-416 6-92 (272)
401 COG1062 AdhC Zn-dependent alco 84.2 5.7 0.00012 41.0 9.0 110 326-467 176-287 (366)
402 PRK08643 acetoin reductase; Va 84.2 24 0.00052 34.3 13.5 77 336-415 2-88 (256)
403 PRK06079 enoyl-(acyl carrier p 84.0 11 0.00024 36.9 11.0 76 335-415 6-92 (252)
404 PRK05653 fabG 3-ketoacyl-(acyl 84.0 17 0.00036 34.8 12.1 78 336-416 5-92 (246)
405 PRK07889 enoyl-(acyl carrier p 83.7 9.4 0.0002 37.6 10.4 122 335-465 6-145 (256)
406 PF05050 Methyltransf_21: Meth 83.5 2.3 4.9E-05 38.4 5.5 53 341-393 1-58 (167)
407 PRK06500 short chain dehydroge 83.5 20 0.00044 34.5 12.6 75 336-416 6-90 (249)
408 PRK12746 short chain dehydroge 83.5 16 0.00035 35.4 11.9 125 336-466 6-147 (254)
409 cd05278 FDH_like Formaldehyde 83.2 6.4 0.00014 40.3 9.3 100 331-463 163-265 (347)
410 TIGR01963 PHB_DH 3-hydroxybuty 83.1 27 0.00059 33.7 13.4 77 338-417 3-89 (255)
411 PRK07067 sorbitol dehydrogenas 82.9 17 0.00037 35.4 11.9 75 336-416 6-90 (257)
412 PF04378 RsmJ: Ribosomal RNA s 82.8 3.9 8.4E-05 40.5 7.0 71 342-416 62-135 (245)
413 PF02254 TrkA_N: TrkA-N domain 82.7 3.6 7.8E-05 35.1 6.1 64 344-415 4-71 (116)
414 COG0604 Qor NADPH:quinone redu 82.6 8.4 0.00018 39.8 9.8 102 331-467 138-243 (326)
415 PRK07102 short chain dehydroge 82.6 22 0.00048 34.3 12.4 77 338-416 3-86 (243)
416 PRK06125 short chain dehydroge 82.5 25 0.00055 34.3 12.9 77 336-414 7-89 (259)
417 PRK08251 short chain dehydroge 82.3 34 0.00074 32.9 13.7 81 336-417 2-92 (248)
418 PRK09186 flagellin modificatio 82.2 20 0.00044 34.7 12.1 78 336-415 4-92 (256)
419 PRK06181 short chain dehydroge 82.1 18 0.00039 35.3 11.7 75 337-414 2-86 (263)
420 PRK07666 fabG 3-ketoacyl-(acyl 82.1 27 0.00058 33.5 12.8 78 336-416 7-94 (239)
421 PRK12826 3-ketoacyl-(acyl-carr 82.0 30 0.00065 33.2 13.2 79 336-417 6-94 (251)
422 PRK12429 3-hydroxybutyrate deh 81.9 23 0.00051 34.2 12.4 78 336-416 4-91 (258)
423 PRK09291 short chain dehydroge 81.8 25 0.00053 34.1 12.5 77 337-416 3-83 (257)
424 TIGR03206 benzo_BadH 2-hydroxy 81.7 33 0.00071 33.0 13.3 79 336-417 3-91 (250)
425 PF11899 DUF3419: Protein of u 81.7 4.3 9.4E-05 42.9 7.3 66 312-380 11-77 (380)
426 cd08261 Zn_ADH7 Alcohol dehydr 81.7 11 0.00025 38.3 10.5 101 329-463 153-256 (337)
427 cd08255 2-desacetyl-2-hydroxye 81.5 15 0.00032 36.2 11.0 48 330-378 92-140 (277)
428 TIGR02415 23BDH acetoin reduct 81.5 28 0.00062 33.6 12.8 80 338-420 2-91 (254)
429 PRK13394 3-hydroxybutyrate deh 81.1 28 0.0006 33.8 12.6 79 336-417 7-95 (262)
430 PRK05650 short chain dehydroge 81.1 24 0.00053 34.7 12.3 76 338-416 2-87 (270)
431 cd08285 NADP_ADH NADP(H)-depen 81.0 13 0.00028 38.3 10.7 103 329-464 160-265 (351)
432 PRK05872 short chain dehydroge 81.0 25 0.00054 35.4 12.5 79 335-417 8-96 (296)
433 cd08236 sugar_DH NAD(P)-depend 80.9 15 0.00032 37.6 10.9 102 330-464 154-257 (343)
434 PRK07806 short chain dehydroge 80.8 26 0.00056 33.8 12.2 118 336-465 6-134 (248)
435 PRK08263 short chain dehydroge 80.8 23 0.00049 35.0 12.0 76 336-417 3-88 (275)
436 PRK07904 short chain dehydroge 80.7 21 0.00046 35.0 11.6 79 334-414 6-95 (253)
437 PLN02662 cinnamyl-alcohol dehy 80.7 15 0.00032 37.2 10.8 80 336-416 4-86 (322)
438 PRK12742 oxidoreductase; Provi 80.6 25 0.00055 33.6 12.0 117 335-466 5-132 (237)
439 PRK08267 short chain dehydroge 80.6 24 0.00052 34.4 12.0 75 338-417 3-88 (260)
440 COG0677 WecC UDP-N-acetyl-D-ma 80.6 2.3 5E-05 44.7 4.6 119 346-488 17-150 (436)
441 cd08296 CAD_like Cinnamyl alco 80.5 14 0.0003 37.8 10.6 98 331-463 159-257 (333)
442 KOG0821 Predicted ribosomal RN 80.4 3.1 6.8E-05 40.2 5.1 64 332-399 47-110 (326)
443 PRK09072 short chain dehydroge 80.3 26 0.00056 34.3 12.1 77 336-416 5-90 (263)
444 TIGR02632 RhaD_aldol-ADH rhamn 80.0 25 0.00055 40.1 13.4 80 336-417 414-504 (676)
445 PRK07984 enoyl-(acyl carrier p 80.0 21 0.00046 35.3 11.4 79 335-416 5-94 (262)
446 PRK06482 short chain dehydroge 79.9 22 0.00047 35.1 11.5 74 338-417 4-87 (276)
447 PRK12829 short chain dehydroge 79.9 32 0.00069 33.4 12.6 79 333-416 8-96 (264)
448 PRK06101 short chain dehydroge 79.7 20 0.00043 34.7 10.9 113 338-464 3-126 (240)
449 PRK12481 2-deoxy-D-gluconate 3 79.7 18 0.00039 35.3 10.7 77 335-416 7-93 (251)
450 PRK05786 fabG 3-ketoacyl-(acyl 79.7 28 0.00061 33.3 12.0 117 336-465 5-135 (238)
451 PRK07890 short chain dehydroge 79.6 35 0.00076 33.0 12.8 77 336-415 5-91 (258)
452 PRK06198 short chain dehydroge 79.5 25 0.00055 34.2 11.7 79 335-416 5-94 (260)
453 KOG3350 Uncharacterized conser 79.4 9.4 0.0002 35.7 7.7 88 315-418 52-147 (217)
454 PLN02896 cinnamyl-alcohol dehy 79.0 25 0.00054 36.3 12.0 79 336-418 10-91 (353)
455 KOG0022 Alcohol dehydrogenase, 78.7 4.7 0.0001 41.2 6.0 57 327-387 184-240 (375)
456 PRK06194 hypothetical protein; 78.7 31 0.00067 34.2 12.3 83 336-421 6-98 (287)
457 PRK06182 short chain dehydroge 78.5 24 0.00051 34.9 11.2 73 336-417 3-85 (273)
458 PRK06196 oxidoreductase; Provi 78.4 22 0.00047 36.1 11.2 75 335-416 25-109 (315)
459 PRK07791 short chain dehydroge 78.2 32 0.00068 34.5 12.2 79 335-416 5-102 (286)
460 cd08234 threonine_DH_like L-th 78.0 19 0.00041 36.5 10.7 99 329-463 153-255 (334)
461 PRK07231 fabG 3-ketoacyl-(acyl 77.9 41 0.0009 32.3 12.6 77 336-416 5-91 (251)
462 PRK12747 short chain dehydroge 77.9 58 0.0013 31.5 13.7 124 336-465 4-144 (252)
463 cd08277 liver_alcohol_DH_like 77.8 23 0.00051 36.8 11.5 103 330-465 179-286 (365)
464 PRK08265 short chain dehydroge 77.8 41 0.00089 32.9 12.7 75 336-416 6-90 (261)
465 PRK12859 3-ketoacyl-(acyl-carr 77.7 39 0.00083 33.0 12.4 81 335-417 5-107 (256)
466 PRK07370 enoyl-(acyl carrier p 77.6 17 0.00037 35.8 9.8 80 335-416 5-97 (258)
467 PRK07792 fabG 3-ketoacyl-(acyl 77.6 31 0.00067 35.0 12.0 80 335-417 11-100 (306)
468 COG0863 DNA modification methy 77.4 4.7 0.0001 40.6 5.9 49 333-384 220-268 (302)
469 PRK08217 fabG 3-ketoacyl-(acyl 77.3 44 0.00096 32.1 12.6 79 335-416 4-92 (253)
470 PLN02827 Alcohol dehydrogenase 77.0 19 0.00042 37.7 10.6 101 331-464 189-294 (378)
471 PRK05855 short chain dehydroge 76.9 31 0.00067 37.9 12.7 82 336-420 315-406 (582)
472 PF04031 Las1: Las1-like ; In 76.9 16 0.00035 33.5 8.6 37 187-236 84-120 (154)
473 PRK08303 short chain dehydroge 76.7 45 0.00098 33.9 12.9 77 335-414 7-103 (305)
474 cd08301 alcohol_DH_plants Plan 76.6 19 0.00041 37.4 10.4 52 330-386 182-234 (369)
475 PRK07478 short chain dehydroge 76.4 61 0.0013 31.4 13.4 78 336-416 6-93 (254)
476 PF13561 adh_short_C2: Enoyl-( 76.3 6.5 0.00014 38.1 6.4 116 343-465 1-133 (241)
477 PRK12748 3-ketoacyl-(acyl-carr 76.3 41 0.00089 32.7 12.2 77 336-415 5-104 (256)
478 PRK05875 short chain dehydroge 76.2 55 0.0012 32.2 13.2 80 336-416 7-96 (276)
479 PLN02586 probable cinnamyl alc 76.1 22 0.00049 36.9 10.7 96 333-464 181-277 (360)
480 PRK06113 7-alpha-hydroxysteroi 76.1 47 0.001 32.2 12.5 78 336-416 11-98 (255)
481 PRK07985 oxidoreductase; Provi 75.9 59 0.0013 32.7 13.5 121 335-465 48-185 (294)
482 PRK05717 oxidoreductase; Valid 75.8 44 0.00096 32.4 12.2 76 335-416 9-94 (255)
483 TIGR03589 PseB UDP-N-acetylglu 75.8 32 0.00068 35.2 11.6 75 336-415 4-83 (324)
484 PRK07832 short chain dehydroge 75.7 55 0.0012 32.2 13.0 76 339-416 3-88 (272)
485 PRK06935 2-deoxy-D-gluconate 3 75.7 39 0.00084 32.9 11.8 78 335-416 14-101 (258)
486 cd08291 ETR_like_1 2-enoyl thi 75.6 19 0.0004 36.6 9.8 37 345-387 155-191 (324)
487 PRK08264 short chain dehydroge 75.3 34 0.00073 32.7 11.1 70 336-415 6-82 (238)
488 PRK06138 short chain dehydroge 75.2 48 0.001 31.9 12.3 79 336-418 5-93 (252)
489 PRK06128 oxidoreductase; Provi 75.2 64 0.0014 32.4 13.5 120 335-464 54-190 (300)
490 cd00401 AdoHcyase S-adenosyl-L 75.0 17 0.00038 38.8 9.5 89 334-465 200-289 (413)
491 cd08245 CAD Cinnamyl alcohol d 74.7 35 0.00075 34.5 11.5 97 331-464 158-255 (330)
492 PRK07578 short chain dehydroge 74.0 20 0.00044 33.4 9.0 103 338-467 2-113 (199)
493 TIGR02819 fdhA_non_GSH formald 74.0 23 0.0005 37.5 10.2 113 331-464 181-298 (393)
494 PRK08993 2-deoxy-D-gluconate 3 73.9 51 0.0011 32.1 12.1 75 336-415 10-94 (253)
495 cd08300 alcohol_DH_class_III c 73.9 30 0.00066 36.0 11.1 102 330-464 181-287 (368)
496 PRK09422 ethanol-active dehydr 73.6 35 0.00076 34.6 11.3 102 329-463 156-259 (338)
497 PRK06179 short chain dehydroge 73.6 27 0.00058 34.3 10.1 71 336-417 4-84 (270)
498 TIGR02818 adh_III_F_hyde S-(hy 73.5 33 0.00072 35.7 11.2 53 330-387 180-233 (368)
499 PRK06997 enoyl-(acyl carrier p 73.5 46 0.001 32.7 11.8 79 335-416 5-94 (260)
500 PRK15182 Vi polysaccharide bio 73.5 34 0.00073 36.8 11.4 114 345-483 13-137 (425)
No 1
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=100.00 E-value=1.1e-82 Score=678.14 Aligned_cols=427 Identities=37% Similarity=0.594 Sum_probs=378.1
Q ss_pred hHHHHHHHHHHHHHhCCCchHHHhhcCCCCCCCccchhhhhcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 009708 59 PHRAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCH 138 (528)
Q Consensus 59 ~aR~~A~~~Ly~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lv~gv~~~~~~LD~~i~~~l~ 138 (528)
++|+.|+|+||+++. +.+++.+++.. ++...++++|++|+++||+||+|++..||++|+++++
T Consensus 2 ~~R~~A~~~L~~i~~-~~~~~~~l~~~----------------~~~~~l~~~dr~~~~~lv~gvlr~~~~lD~~i~~~~~ 64 (434)
T PRK14901 2 NARQLAWEILQAVAR-GAYADVALERV----------------LRKYPLSGADRALVTELVYGCIRRRRTLDAWIDQLGK 64 (434)
T ss_pred CHHHHHHHHHHHHHc-CCchHHHHHHH----------------HHhcCCChhHHHHHHHHHHHHHHhHHHHHHHHHHhcC
Confidence 369999999999987 57777666432 1233578899999999999999999999999999986
Q ss_pred CCCCCCcccHHHHHHHHHHHHHHHhcC-CCCchhHHHHHHHHHHhcCCCchhhHHHHHHHHHhhcCCC-CCCCCcCcCCc
Q 009708 139 DEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNN-SLPLPKLEGND 216 (528)
Q Consensus 139 ~~~~~~~l~~~~~~iLrlg~~el~~~~-~p~~~~inEaV~lak~~~~~~~~~fVN~VL~~~~r~~~~~-~~~~~~~~~~~ 216 (528)
|++.++++++++|||+|+|||+|++ +|++++|||+|++||++++++.++|||||||++.+..+.. ....+ +
T Consensus 65 --~~~~~l~~~~r~iLrla~yel~~~~~~p~~aavneaVelak~~~~~~~~~fVNgVLr~~~r~~~~~~~~~~~----~- 137 (434)
T PRK14901 65 --KPAHKQPPDLRWLLHLGLYQLRYMDRIPASAAVNTTVELAKQNGLGGLAGVVNGILRQYLRAREAGDPLPLP----E- 137 (434)
T ss_pred --CChhhcCHHHHHHHHHHHHHHHhCccCCcHHHHHHHHHHHHHcCchhhhhhcCHHHHHHHHhhhccccccCC----c-
Confidence 7788899999999999999999987 8999999999999999999899999999999999964321 11111 1
Q ss_pred HHHHHHHHhhhcChHHHHHHHHHHhCHHHHHHHHHhcCCCCCeEEEEcCCCCCCHHHHHHHHhhcCCCCCceecccCCce
Q 009708 217 RAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEF 296 (528)
Q Consensus 217 ~~~~~~ls~~~s~P~w~~~~~~~~~g~~~~~~~~~~~~~~~~~~~rvn~~k~~~~~~~~~~L~~~~~~~~~~~~~~~~~~ 296 (528)
....+++++||+|+||+++|.+.||.+++++++++++++||+++|||++| .+++++.+.|++.|+ ..+..+++++.
T Consensus 138 -~~~~~l~~~~s~P~wl~~~~~~~~g~~~~~~~~~~~~~~~~~~~Rvn~~k-~~~~~~~~~l~~~g~--~~~~~~~~~~~ 213 (434)
T PRK14901 138 -DPIERLAILHSFPDWLVKLWLEWLGLEEAEQLCKWFNQPPSLDLRINPLR-TSLEEVQAALAEAGI--TATPIPGLPQG 213 (434)
T ss_pred -ChHHHHHHHhCCcHHHHHHHHHHhCHHHHHHHHHHhCCCCCeEEEECCCC-CCHHHHHHHHHHCCC--ceEECCCCCCe
Confidence 13467999999999999999999999999999999999999999999999 799999999999665 45667788888
Q ss_pred EEeeCCccchhcccccccceeEeecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHH
Q 009708 297 IRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRIL 376 (528)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~G~~~~Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~ 376 (528)
+++......+...+.|.+|++++||.+|++++.++++++|++|||+|||||++|+++++.+++.++|+|+|+++.+++.+
T Consensus 214 ~~~~~~~~~~~~~~~f~~g~~~~qd~~s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~ 293 (434)
T PRK14901 214 LRLTGNPGSIRQLPGYEEGWWTVQDRSAQLVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKL 293 (434)
T ss_pred EEecCCCCccccChHHhCCeEEEECHHHHHHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHH
Confidence 88865322466778999999999999999999999999999999999999999999999988788999999999999999
Q ss_pred HHHHHHcCCCccEEEEcCccccccc---cCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhc
Q 009708 377 NETAKLHQVNSVIRTIHADLRTFAD---NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASL 453 (528)
Q Consensus 377 ~~n~~~~g~~~~i~~~~~D~~~~~~---~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~ 453 (528)
++|++++|+++ ++++++|+..+.. ...++||.|++||||||+|+++++|+++|..++.++..+..+|.++|.++++
T Consensus 294 ~~n~~r~g~~~-v~~~~~D~~~~~~~~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~ 372 (434)
T PRK14901 294 QENAQRLGLKS-IKILAADSRNLLELKPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAP 372 (434)
T ss_pred HHHHHHcCCCe-EEEEeCChhhcccccccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999986 8999999987652 1236799999999999999999999999999999999999999999999999
Q ss_pred cCcCCCEEEEEcCCCCchhhHHHHHHHHhhCCCceEecCCCCCCCccccCCceEEEcCCCCCCCceEEEEEEec
Q 009708 454 LVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARLVRA 527 (528)
Q Consensus 454 ~LkpGG~LvysTcs~~~~Ene~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~P~~~~~dGff~a~l~k~ 527 (528)
+|||||+|||+|||++++||+++|.+|+++||+|++.+.. + +++||.|++||||+|+|+|.
T Consensus 373 ~lkpgG~lvystcsi~~~Ene~~v~~~l~~~~~~~~~~~~-----------~--~~~P~~~~~dGfF~a~l~k~ 433 (434)
T PRK14901 373 LLKPGGTLVYATCTLHPAENEAQIEQFLARHPDWKLEPPK-----------Q--KIWPHRQDGDGFFMAVLRKK 433 (434)
T ss_pred hcCCCCEEEEEeCCCChhhHHHHHHHHHHhCCCcEecCCC-----------C--ccCCCCCCCCcEEEEEEEeC
Confidence 9999999999999999999999999999999999865420 0 26899999999999999985
No 2
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=100.00 E-value=5e-80 Score=655.01 Aligned_cols=422 Identities=29% Similarity=0.466 Sum_probs=371.9
Q ss_pred hHHHHHHHHHHHHHhCCCchHHHhhcCCCCCCCccchhhhhcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 009708 59 PHRAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCH 138 (528)
Q Consensus 59 ~aR~~A~~~Ly~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lv~gv~~~~~~LD~~i~~~l~ 138 (528)
++|++|+++|+++...+.+++.+++.. +. .++++|++|+++|||||+|++..||++|+++++
T Consensus 4 ~~R~~A~~~L~~v~~~~~~~~~~l~~~----------------~~--~l~~~d~~~~~~lv~gvlr~~~~lD~~i~~~~~ 65 (431)
T PRK14903 4 NVRLLAYRLLRKYEKEKFIFREDVDSV----------------LS--FLDDKDRRFFKELVWGVVRKEELLDWYINQLLK 65 (431)
T ss_pred CHHHHHHHHHHHHHhCCCchHHHHHHH----------------HH--hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 369999999999999888877766431 12 588999999999999999999999999999997
Q ss_pred CCCCCCcccHHHHHHHHHHHHHHHhcC-CCCchhHHHHHHHHHHhcCCCchhhHHHHHHHHHhhcCCCCCCCCcCcCCcH
Q 009708 139 DEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDR 217 (528)
Q Consensus 139 ~~~~~~~l~~~~~~iLrlg~~el~~~~-~p~~~~inEaV~lak~~~~~~~~~fVN~VL~~~~r~~~~~~~~~~~~~~~~~ 217 (528)
+ | ++++++++|||+|+|||+|++ +|++++|||+|+|||++ ..++|||||||+++++.. +
T Consensus 66 ~-~---~l~~~~r~iLr~~~yel~~~~~~p~~aavneaV~lak~~---~~~~fVNaVLr~~~r~~~------~------- 125 (431)
T PRK14903 66 K-K---DIPPAVRVALRMGAYQLLFMNSVPDYAAVSETVKLVKNE---NFKKLVNAVLRRLRTVPE------P------- 125 (431)
T ss_pred C-C---CCCHHHHHHHHHHHHHHHhccCCCcceeHHHHHHHHhcc---chHHHHHHHHHHHHHhhc------c-------
Confidence 5 4 699999999999999999998 79999999999999985 578999999999998511 1
Q ss_pred HHHHHHHhhhcChHHHHHHHHHHhCHHHHHHHHHhcCCCCCeEEEEcCCCCCCHHHHHHHHhhcCCCCCceecccCCceE
Q 009708 218 AQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFI 297 (528)
Q Consensus 218 ~~~~~ls~~~s~P~w~~~~~~~~~g~~~~~~~~~~~~~~~~~~~rvn~~k~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~ 297 (528)
.+++++||+|+||+++|.+.||.+++++++++++++||+++|||++| .+++++.+.|+..|+ .....++.+..+
T Consensus 126 ---~~l~~~~s~P~wl~~~~~~~~g~~~~~~~~~~~~~~~~~~~RvN~~k-~~~~~~~~~l~~~g~--~~~~~~~~~~~~ 199 (431)
T PRK14903 126 ---KELHLKYSHPKWLVNYWRSFLPEEAVLRIMEWNQEPLPTMLRVNSLA-ITREEVIKILAEEGT--EAVPGKHSPFSL 199 (431)
T ss_pred ---hhhhhhhcCcHHHHHHHHHHcCHHHHHHHHHHhcCCCCeeEEeeCCc-CCHHHHHHHHHHCCC--eeEECCCCCceE
Confidence 25889999999999999999999999999999999999999999999 799999999998765 345667788888
Q ss_pred EeeCCccchhcccccccceeEeecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHH
Q 009708 298 RVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILN 377 (528)
Q Consensus 298 ~~~~~~~~~~~~~~~~~G~~~~Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~ 377 (528)
++......+..++.|++|.+++||.+|++++.++++++|++|||+|||||+||+++++.++++++|+|+|+++.+++.++
T Consensus 200 ~~~~~~~~~~~~~~~~~G~~~~Qd~~s~~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~ 279 (431)
T PRK14903 200 IVRKLGVNMNDSRVIKDGLATVQGESSQIVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVE 279 (431)
T ss_pred EEcCCCCCcccChHHHCCeEEEECHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHH
Confidence 77642224667788999999999999999999999999999999999999999999999988899999999999999999
Q ss_pred HHHHHcCCCccEEEEcCccccccccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcC
Q 009708 378 ETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKP 457 (528)
Q Consensus 378 ~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~Lkp 457 (528)
+|+++.|+++ ++++++|+..+.....++||.|++||||||+|+++++|+++|+.+++++..+..+|.++|.+++++|||
T Consensus 280 ~n~~r~g~~~-v~~~~~Da~~l~~~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~Lkp 358 (431)
T PRK14903 280 KHAKRLKLSS-IEIKIADAERLTEYVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEK 358 (431)
T ss_pred HHHHHcCCCe-EEEEECchhhhhhhhhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999986 899999998765333467999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEcCCCCchhhHHHHHHHHhhCCCceEecCCCCCCC----ccccCCceEEEcCCCCCCCceEEEEEEec
Q 009708 458 GGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPS----DFVTKHGFFFSDPIKHSLDGAFAARLVRA 527 (528)
Q Consensus 458 GG~LvysTcs~~~~Ene~~v~~~l~~~~~~~~~~~~~~~~~----~~~~~~g~~~~~P~~~~~dGff~a~l~k~ 527 (528)
||+|||||||+.++|||++|.+||++||+|++.+....... ......| ++++|+. .+||||+|+|+|.
T Consensus 359 GG~LvYsTCs~~~eEne~vv~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~P~~-~~dGFf~a~L~k~ 430 (431)
T PRK14903 359 GGILLYSTCTVTKEENTEVVKRFVYEQKDAEVIDIRDKLEEFEVEGIWDGYG-FLMLPDE-TLTPFYVSVLRKM 430 (431)
T ss_pred CCEEEEEECCCChhhCHHHHHHHHHhCCCcEEecccccccccccccccCCCc-EEECcCC-CCCcEEEEEEEeC
Confidence 99999999999999999999999999999987665321110 0111235 6899986 6899999999985
No 3
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=100.00 E-value=4.7e-79 Score=649.20 Aligned_cols=424 Identities=33% Similarity=0.461 Sum_probs=368.0
Q ss_pred HHHHHHHHHHHHhCCCchHHHhhcCCCCCCCccchhhhhcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 009708 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDE 140 (528)
Q Consensus 61 R~~A~~~Ly~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lv~gv~~~~~~LD~~i~~~l~~~ 140 (528)
|+.|+|+||+++.++.+++.+... ...+++.|++|+++||+||++++..||++|+++++
T Consensus 1 R~~A~~~L~~~~~~~~~~~~~~~~-------------------~~~l~~~d~~~~~~lv~gv~r~~~~lD~~i~~~~~-- 59 (426)
T TIGR00563 1 RSIAAQALEQLEQGQSLSNLLPPL-------------------QQKVSDQDRALLQELCFGVLRTLSQLDWLIKKLMD-- 59 (426)
T ss_pred CHHHHHHHHHHHcCCchHHHHHhh-------------------hcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHhC--
Confidence 789999999999888776665432 12478899999999999999999999999999997
Q ss_pred CCCCcccHHHHHHHHHHHHHHHh-cCCCCchhHHHHHHHHHHhcCCCchhhHHHHHHHHHhhcCCCCCCCCcCcCCcHHH
Q 009708 141 KTFSSMEPLLLQILRIGFYEIVK-LDMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQ 219 (528)
Q Consensus 141 ~~~~~l~~~~~~iLrlg~~el~~-~~~p~~~~inEaV~lak~~~~~~~~~fVN~VL~~~~r~~~~~~~~~~~~~~~~~~~ 219 (528)
|++.+++++++ +||+++||++| +++|++++|||||+|||+|++++.++|||||||+++++.+.. . ..
T Consensus 60 ~~~~~l~~~~~-~L~~~~~e~l~~~~~p~~aainEaVelaK~~~~~~~~~fVNgVLr~i~r~~~~~---~--------~~ 127 (426)
T TIGR00563 60 RPMKGKPRTVH-YLILVGLYQLLYTRIPAHAAVAETVEGAKAIKRKGLKGLVNGVLRRFQREQEEL---L--------AE 127 (426)
T ss_pred CCccccCHHHH-HHHHHHHHHHhcCCCCCEehHHHHHHHHHhcCCccchhhHHHHHHHHhhcchhh---c--------ch
Confidence 78889999877 88888888766 679999999999999999999999999999999999963310 0 12
Q ss_pred HHHHHhhhcChHHHHHHHHHHhCHHHHHHHHHhcCCCCCeEEEEcCCCCCCHHHHHHHHhhcCCCCCceecccCCceEEe
Q 009708 220 ARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFIRV 299 (528)
Q Consensus 220 ~~~ls~~~s~P~w~~~~~~~~~g~~~~~~~~~~~~~~~~~~~rvn~~k~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~ 299 (528)
.++||++||+|.|++++|.+.|+ +++++++++++++||+++|||+.| .+++++.+.|++.|+ .....++.++.+++
T Consensus 128 ~~~l~~~~s~P~wl~~~~~~~~~-~~~~~~l~~~~~~~~~~~Rvn~~k-~~~~~~~~~l~~~g~--~~~~~~~~~~~~~~ 203 (426)
T TIGR00563 128 FNALDARYLHPEWLVKRLQKAYP-GQWQSICEANNQRPPMWLRINRTK-HSRDEWLALLAEAGM--KGFPHDLAPDAVRL 203 (426)
T ss_pred hHhHHHHcCCCHHHHHHHHHHhH-HHHHHHHHHhCCCCCeEEEEcCCc-CCHHHHHHHHHhcCC--ceeeCCCCCCeEEE
Confidence 45699999999999999999996 457899999999999999999999 689999999999765 34566778888887
Q ss_pred eCCccchhcccccccceeEeecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHH
Q 009708 300 KTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNET 379 (528)
Q Consensus 300 ~~~~~~~~~~~~~~~G~~~~Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n 379 (528)
..+. .+...+.|++|++++||.+|++++..+++++|++|||+|||||++|+++++.++ .++|+|+|+++.+++.+++|
T Consensus 204 ~~~~-~~~~~~~~~~G~~~~Qd~~s~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n 281 (426)
T TIGR00563 204 ETPA-AVHALPGFEEGWVTVQDASAQWVATWLAPQNEETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYEN 281 (426)
T ss_pred CCCC-CcccCchhhCCeEEEECHHHHHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHH
Confidence 6432 466778899999999999999999999999999999999999999999999876 68999999999999999999
Q ss_pred HHHcCCCccEEEEcCcccccccc-CCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCC
Q 009708 380 AKLHQVNSVIRTIHADLRTFADN-STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPG 458 (528)
Q Consensus 380 ~~~~g~~~~i~~~~~D~~~~~~~-~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpG 458 (528)
++++|+...+++..+|....... ...+||.|++||||||+|+++++|+++|.++++++.++..+|.++|.+|+++||||
T Consensus 282 ~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~Lkpg 361 (426)
T TIGR00563 282 LKRLGLTIKAETKDGDGRGPSQWAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTG 361 (426)
T ss_pred HHHcCCCeEEEEeccccccccccccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 99999874455577777654321 23579999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEcCCCCchhhHHHHHHHHhhCCCceEecCCCCCCCccccCCceEEEcCCCCCCCceEEEEEEec
Q 009708 459 GVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARLVRA 527 (528)
Q Consensus 459 G~LvysTcs~~~~Ene~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~P~~~~~dGff~a~l~k~ 527 (528)
|+|||||||++++|||++|.+||++||+|.++... .+.. ...|+++++||.+++||||+|+|+|.
T Consensus 362 G~lvystcs~~~~Ene~~v~~~l~~~~~~~~~~~~--~~~~--~~~~~~~~~P~~~~~dGff~a~l~k~ 426 (426)
T TIGR00563 362 GTLVYATCSVLPEENSEQIKAFLQEHPDFPFEKTG--TPEQ--VRDGGLQILPHAEEGDGFFYAKLIKK 426 (426)
T ss_pred cEEEEEeCCCChhhCHHHHHHHHHhCCCCeeccCC--Cccc--cCCCcEEECCCCCCCCCeEEEEEEeC
Confidence 99999999999999999999999999999765431 1111 23567899999999999999999983
No 4
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=100.00 E-value=6.9e-79 Score=650.99 Aligned_cols=437 Identities=37% Similarity=0.619 Sum_probs=377.7
Q ss_pred hHHHHHHHHHHHHHhCCCchHHHhhcCCCCCCCccchhhhhcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 009708 59 PHRAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCH 138 (528)
Q Consensus 59 ~aR~~A~~~Ly~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lv~gv~~~~~~LD~~i~~~l~ 138 (528)
.+|++|+|+||+++.++.+++.+.... ++...+++.|++|+++||+||+|++..||++|+++++
T Consensus 3 ~~R~~A~~~L~~~~~~~~~~~~~l~~~----------------~~~~~l~~~dr~~~~~lv~gvlr~~~~lD~~i~~~~~ 66 (445)
T PRK14904 3 TARELALQVLQELETGERKSDTLLHRM----------------LERSSLERNDRALATELVNGVLRYRLQLDFIISRFYH 66 (445)
T ss_pred hHHHHHHHHHHHHHhcCCCHHHHHHHH----------------HHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 479999999999999998888776542 2233588899999999999999999999999999996
Q ss_pred CCCCCCcccHHHHHHHHHHHHHHHhcC-CCCchhHHHHHHHHHHhcCCCchhhHHHHHHHHHhhcCCCCCCCCcCcCCcH
Q 009708 139 DEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDR 217 (528)
Q Consensus 139 ~~~~~~~l~~~~~~iLrlg~~el~~~~-~p~~~~inEaV~lak~~~~~~~~~fVN~VL~~~~r~~~~~~~~~~~~~~~~~ 217 (528)
|++.++++++++|||+|+|||+|++ +|++++|||+|+|||+|+++.+++|||||||+++++........+. .
T Consensus 67 --~~~~rl~~~~r~iLrla~~ell~~~~~p~~a~vneaVelak~~~~~~~~~fVNgVLr~i~~~~~~~~~~~~~-----~ 139 (445)
T PRK14904 67 --HDLEKAAPVLKNILRLGVYQLLFLDRVPRWAAVNECVKLARKYKGEHMAKLVNGVLRNISPETISLDEWLKG-----M 139 (445)
T ss_pred --CChhhCCHHHHHHHHHHHHHHHhCCCCCCeeeHHHHHHHHHHhCCCccccchHHHHHHHHHhhccccccccc-----c
Confidence 8899999999999999999999986 8999999999999999999999999999999999964221111111 1
Q ss_pred HHHHHHHhhhcChHHHHHHHHHHhCHHHHHHHHHhcCCCCCeEEEEcCCCCCCHHHHHHHHhhcCCCCCceecccCCceE
Q 009708 218 AQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFI 297 (528)
Q Consensus 218 ~~~~~ls~~~s~P~w~~~~~~~~~g~~~~~~~~~~~~~~~~~~~rvn~~k~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~ 297 (528)
....+|+++||+|+||+++|.+.||.+++++++++++++|++++|||+++ .+++++.+.|+..|+. ....++ +. +
T Consensus 140 ~~~~~l~~~~s~P~wl~~~~~~~~g~~~~~~~~~~~~~~~~~~~Rvn~~~-~~~~~~~~~l~~~~~~--~~~~~~-~~-~ 214 (445)
T PRK14904 140 PEAERLSLLYSHPEWLLERWIARYGEERTEAMLSYNNQAPLFGFRINRLK-TTPEKFLAAPADASVT--FEKSGL-PN-F 214 (445)
T ss_pred chHHHHHHHhCCCHHHHHHHHHHhChHHHHHHHHHhCCCCCceeEeCCCC-CCHHHHHHHHHhCCCc--eEEcCc-ce-E
Confidence 23456999999999999999999999999999999999999999999998 6999999999986653 333333 22 3
Q ss_pred EeeCCccchhcccccccceeEeecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHH
Q 009708 298 RVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILN 377 (528)
Q Consensus 298 ~~~~~~~~~~~~~~~~~G~~~~Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~ 377 (528)
.+.... ....+.|.+|.+++||+++++++.++++.+|++|||+|||+|++|+++++.+++.++|+|+|+++.+++.++
T Consensus 215 ~~~~~~--~~~~~~~~~G~~~vqd~~s~l~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~ 292 (445)
T PRK14904 215 FLSKDF--SLFEPFLKLGLVSVQNPTQALACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIR 292 (445)
T ss_pred EEeccc--cccChHHhCcEEEEeCHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHH
Confidence 443321 112367999999999999999999999999999999999999999999998877789999999999999999
Q ss_pred HHHHHcCCCccEEEEcCccccccccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcC
Q 009708 378 ETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKP 457 (528)
Q Consensus 378 ~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~Lkp 457 (528)
+|++++|+++ |+++++|+..+.. ...||+|++||||||+|+++++|+++|..+++++..+...|.++|..++++|||
T Consensus 293 ~~~~~~g~~~-v~~~~~Da~~~~~--~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkp 369 (445)
T PRK14904 293 SHASALGITI-IETIEGDARSFSP--EEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKP 369 (445)
T ss_pred HHHHHhCCCe-EEEEeCccccccc--CCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999975 8999999987653 357999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEcCCCCchhhHHHHHHHHhhCCCceEecCCCCCCCcc---ccCCceEEEcCCCC-CCCceEEEEEEecC
Q 009708 458 GGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDF---VTKHGFFFSDPIKH-SLDGAFAARLVRAF 528 (528)
Q Consensus 458 GG~LvysTcs~~~~Ene~~v~~~l~~~~~~~~~~~~~~~~~~~---~~~~g~~~~~P~~~-~~dGff~a~l~k~~ 528 (528)
||+|||+|||++++|||++|.+||++|++|++......++..+ ....|+++++|+.+ ++||||+|+|+|..
T Consensus 370 gG~lvystcs~~~~Ene~~v~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~P~~~~~~dGfF~a~l~k~~ 444 (445)
T PRK14904 370 GGVLVYATCSIEPEENELQIEAFLQRHPEFSAEPSPGSLPEPFHEVAHPKGAILTLPGEHEGFDGGFAQRLRKNA 444 (445)
T ss_pred CcEEEEEeCCCChhhHHHHHHHHHHhCCCCEEeccccccccccccccCCCCcEEECCCCCCCCCcEEEEEEEecC
Confidence 9999999999999999999999999999998766543332211 23467889999987 88999999999963
No 5
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=100.00 E-value=1.1e-78 Score=649.95 Aligned_cols=437 Identities=36% Similarity=0.613 Sum_probs=387.1
Q ss_pred hHHHHHHHHHHHHHhCCCchHHHhhcCCCCCCCccchhhhhcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 009708 59 PHRAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCH 138 (528)
Q Consensus 59 ~aR~~A~~~Ly~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lv~gv~~~~~~LD~~i~~~l~ 138 (528)
.+|++|+|+||+++.++.+++.++... ++...+++.|++|+++||+|+++++..||++|+++++
T Consensus 4 ~~R~~A~~~L~~~~~~~~~~~~~l~~~----------------~~~~~l~~~d~~~~~~lv~g~lr~~~~ld~~i~~~~~ 67 (444)
T PRK14902 4 NARELALEVLIKVENNGAYSNIALNKV----------------LKKSELSDKDKALLTELVYGTIQRKLTLDYYLAPFIK 67 (444)
T ss_pred cHHHHHHHHHHHHHhcCCCHHHHHHHH----------------HHhcCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHhh
Confidence 479999999999999888887776542 2233588899999999999999999999999999997
Q ss_pred CCCCCCcccHHHHHHHHHHHHHHHhcC-CCCchhHHHHHHHHHHhcCCCchhhHHHHHHHHHhhcCCCCCCCCcCcCCcH
Q 009708 139 DEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDR 217 (528)
Q Consensus 139 ~~~~~~~l~~~~~~iLrlg~~el~~~~-~p~~~~inEaV~lak~~~~~~~~~fVN~VL~~~~r~~~~~~~~~~~~~~~~~ 217 (528)
+ ++++++++++|||+|+|||+|++ +|++++|||+|++||.|+++++++||||||++++++... ..+.. .
T Consensus 68 --~-~~~l~~~~r~iLrla~~el~~~~~~p~~~~ineav~lak~~~~~~~~~fVNaVL~~i~~~~~~---~~~~~----~ 137 (444)
T PRK14902 68 --K-RKKLDPWVRNLLRMSLYQLLYLDKVPDHAAVNEAVEIAKKRGHKGIAKFVNGVLRNILREGLP---DIDEI----K 137 (444)
T ss_pred --h-hhhCCHHHHHHHHHHHHHHHhccCCCCceeHHHHHHHHHHhCCCchhHHHHHHHHHHhhcccc---ccccc----c
Confidence 5 89999999999999999999986 999999999999999999999999999999999985311 11111 1
Q ss_pred HHHHHHHhhhcChHHHHHHHHHHhCHHHHHHHHHhcCCCCCeEEEEcCCCCCCHHHHHHHHhhcCCCCCceecccCCceE
Q 009708 218 AQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFI 297 (528)
Q Consensus 218 ~~~~~ls~~~s~P~w~~~~~~~~~g~~~~~~~~~~~~~~~~~~~rvn~~k~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~ 297 (528)
....+++++||+|.|++++|.+.||.+++++++++++++|++++|+|+.| .+++++.+.|++.|+ .....++.++.+
T Consensus 138 ~~~~~~~~~~~~P~w~~~~~~~~~g~~~~~~~l~~~~~~~~~~~Rvn~~k-~~~~~~~~~l~~~g~--~~~~~~~~~~~~ 214 (444)
T PRK14902 138 DPVKRLSIKYSHPVWLVKRWIDQYGEEKAEKILESLNEPPKASIRVNTLK-ISVEELIEKLEEEGY--EVEESLLSPEAL 214 (444)
T ss_pred CHHHHHHHHhCChHHHHHHHHHHhCHHHHHHHHHHcCCCCCeEEEEcCCC-CCHHHHHHHHHHcCc--eeEEcCCCCCeE
Confidence 23567999999999999999999999999999999999999999999998 689999999999765 455677888888
Q ss_pred EeeCCccchhcccccccceeEeecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHH
Q 009708 298 RVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILN 377 (528)
Q Consensus 298 ~~~~~~~~~~~~~~~~~G~~~~Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~ 377 (528)
.+.. ..+..++.|++|.+++||.++++++.++++++|++|||+|||||++|+++++.+++.++|+|+|+++.+++.++
T Consensus 215 ~~~~--~~~~~~~~~~~G~~~~qd~~s~lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~ 292 (444)
T PRK14902 215 VIEK--GNIAGTDLFKDGLITIQDESSMLVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIE 292 (444)
T ss_pred EEeC--CCcccChHHhCceEEEEChHHHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHH
Confidence 8875 34677889999999999999999999999999999999999999999999998867789999999999999999
Q ss_pred HHHHHcCCCccEEEEcCccccccccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcC
Q 009708 378 ETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKP 457 (528)
Q Consensus 378 ~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~Lkp 457 (528)
+|++++|+++ ++++++|+..+.....++||.|++||||||+|+++++|+++|.+++.++..+..+|.++|..++++|||
T Consensus 293 ~n~~~~g~~~-v~~~~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~Lkp 371 (444)
T PRK14902 293 ENAKRLGLTN-IETKALDARKVHEKFAEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKK 371 (444)
T ss_pred HHHHHcCCCe-EEEEeCCcccccchhcccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999987 999999998764333367999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEcCCCCchhhHHHHHHHHhhCCCceEecCCCCCCCccc--cCCceEEEcCCCCCCCceEEEEEEec
Q 009708 458 GGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFV--TKHGFFFSDPIKHSLDGAFAARLVRA 527 (528)
Q Consensus 458 GG~LvysTcs~~~~Ene~~v~~~l~~~~~~~~~~~~~~~~~~~~--~~~g~~~~~P~~~~~dGff~a~l~k~ 527 (528)
||+|||+|||++++||+.++.+|+++|++|++.++....+.... ...|+++++||.+++||||+|+|+|.
T Consensus 372 GG~lvystcs~~~~Ene~vv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~P~~~~~dGfF~a~l~k~ 443 (444)
T PRK14902 372 GGILVYSTCTIEKEENEEVIEAFLEEHPEFELVPLQHEKPDELVYEVKDGYLQILPNDYGTDGFFIAKLRKK 443 (444)
T ss_pred CCEEEEEcCCCChhhhHHHHHHHHHhCCCcEEecccccccccccccccCCeEEECCCCCCCCCeEEEEEEEC
Confidence 99999999999999999999999999999998876543222111 23578899999999999999999985
No 6
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=100.00 E-value=1.4e-78 Score=645.32 Aligned_cols=424 Identities=32% Similarity=0.467 Sum_probs=374.9
Q ss_pred hHHHHHHHHHHHHHhCCCchHHHhhcCCCCCCCccchhhhhcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 009708 59 PHRAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCH 138 (528)
Q Consensus 59 ~aR~~A~~~Ly~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lv~gv~~~~~~LD~~i~~~l~ 138 (528)
++|++|+|+||+++.++.+++.++... ++ .+++.|++|+++||+||++|+..||++|.++++
T Consensus 3 ~~R~~a~~~L~~~~~~~~~~~~~l~~~----------------~~--~l~~~d~~~~~~lv~gv~r~~~~lD~~i~~~~~ 64 (427)
T PRK10901 3 NLRALAAAAILQVVDQGQSLSAALPAL----------------QQ--KVSDKDRALLQELCYGVLRRLPRLEWLIAQLLA 64 (427)
T ss_pred hHHHHHHHHHHHHHHcCCcHHHHHHHH----------------Hh--hCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHhC
Confidence 479999999999999999888776542 11 477899999999999999999999999999997
Q ss_pred CCCCCCcccHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCCchhhHHHHHHHHHhhcCCCCCCCCcCcCCcHH
Q 009708 139 DEKTFSSMEPLLLQILRIGFYEIVKLDMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRA 218 (528)
Q Consensus 139 ~~~~~~~l~~~~~~iLrlg~~el~~~~~p~~~~inEaV~lak~~~~~~~~~fVN~VL~~~~r~~~~~~~~~~~~~~~~~~ 218 (528)
|++.++++++++|||+|+|||+|+++|++++|||+|+|||+|++++.++|||||||++++..+. .+..
T Consensus 65 --~~~~~l~~~~r~iLrla~yell~~~iP~~a~vneaVelak~~~~~~~~~fVNaVLr~i~~~~~~----~~~~------ 132 (427)
T PRK10901 65 --KPLKGKQRIVHALLLVGLYQLLYTRIPAHAAVDETVEAAKALKRPWAKGLVNAVLRRFQREQEE----LLAE------ 132 (427)
T ss_pred --CCccccCHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHhcCCccchhhHHHHHHHhhhhhhh----hhhh------
Confidence 7889999999999999999999999999999999999999999999999999999999986331 1110
Q ss_pred HHHHHHhhhcChHHHHHHHHHHhCHHHHHHHHHhcCCCCCeEEEEcCCCCCCHHHHHHHHhhcCCCCCceecccCCceEE
Q 009708 219 QARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFIR 298 (528)
Q Consensus 219 ~~~~ls~~~s~P~w~~~~~~~~~g~~~~~~~~~~~~~~~~~~~rvn~~k~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~ 298 (528)
....+|++||+|+||+++|.+.|| +++++++++++++||+++|||++| .+++++.+.|++.|+ ..+..++.++.++
T Consensus 133 ~~~~~~~~~s~P~wl~~~~~~~~~-~~~~~~~~~~~~~~~~~~Rvn~~k-~~~~~~~~~l~~~~~--~~~~~~~~~~~~~ 208 (427)
T PRK10901 133 LQADPVARYNHPSWLIKRLKKAYP-EQWQAILAANNQRPPMWLRVNRRH-HSRDAYLALLAEAGI--EAFPHAVGPDAIR 208 (427)
T ss_pred hhhchHhHhcCCHHHHHHHHHHhH-HHHHHHHHHcCCCCCeEEEEcCCC-CCHHHHHHHHHhCCC--ceeecCCCCCeEE
Confidence 123579999999999999999997 568899999999999999999999 689999999998665 3456678888888
Q ss_pred eeCCccchhcccccccceeEeecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHH
Q 009708 299 VKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNE 378 (528)
Q Consensus 299 ~~~~~~~~~~~~~~~~G~~~~Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~ 378 (528)
+..+. .+..++.|++|++++||.+|++++.++++++|++|||+|||||++|+++++.+++ ++|+|+|+++.+++.+++
T Consensus 209 ~~~~~-~~~~~~~~~~G~~~iQd~~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~-~~v~a~D~s~~~l~~~~~ 286 (427)
T PRK10901 209 LETPV-PVHQLPGFAEGWVSVQDAAAQLAATLLAPQNGERVLDACAAPGGKTAHILELAPQ-AQVVALDIDAQRLERVRE 286 (427)
T ss_pred ECCCC-CcccCchhhCceEEEECHHHHHHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcCC-CEEEEEeCCHHHHHHHHH
Confidence 86432 3566788999999999999999999999999999999999999999999998653 799999999999999999
Q ss_pred HHHHcCCCccEEEEcCcccccccc-CCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcC
Q 009708 379 TAKLHQVNSVIRTIHADLRTFADN-STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKP 457 (528)
Q Consensus 379 n~~~~g~~~~i~~~~~D~~~~~~~-~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~Lkp 457 (528)
|++++|+. ++++++|+..+... ..++||.|++||||||+|+++++|+++|..++.++.++...|.++|..+.++|||
T Consensus 287 n~~~~g~~--~~~~~~D~~~~~~~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~Lkp 364 (427)
T PRK10901 287 NLQRLGLK--ATVIVGDARDPAQWWDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKP 364 (427)
T ss_pred HHHHcCCC--eEEEEcCcccchhhcccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999986 57899999875432 1357999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEcCCCCchhhHHHHHHHHhhCCCceEecCCCCCCCccccCCceEEEcCCCCCCCceEEEEEEec
Q 009708 458 GGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARLVRA 527 (528)
Q Consensus 458 GG~LvysTcs~~~~Ene~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~P~~~~~dGff~a~l~k~ 527 (528)
||+|||+|||++++||+++|..|+++|++|++++... ...+.++++||.+++||||+|+|+|.
T Consensus 365 GG~lvystcs~~~~Ene~~v~~~l~~~~~~~~~~~~~-------~~~~~~~~~P~~~~~dGff~a~l~k~ 427 (427)
T PRK10901 365 GGTLLYATCSILPEENEQQIKAFLARHPDAELLDTGT-------PQQPGRQLLPGEEDGDGFFYALLIKR 427 (427)
T ss_pred CCEEEEEeCCCChhhCHHHHHHHHHhCCCCEEecCCC-------CCCCceEECCCCCCCCCeEEEEEEEC
Confidence 9999999999999999999999999999998766321 11233689999999999999999984
No 7
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1e-63 Score=516.92 Aligned_cols=346 Identities=39% Similarity=0.573 Sum_probs=296.2
Q ss_pred CCCchhHHHHHHHHHH-hcCCCchhhHHHHHHHHHhhcCCCCCCCCcCcCCcHHHHHHHHhhhcChHHHHHHHHHHhCHH
Q 009708 166 MPPYAVVDENVRLAKV-ALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQE 244 (528)
Q Consensus 166 ~p~~~~inEaV~lak~-~~~~~~~~fVN~VL~~~~r~~~~~~~~~~~~~~~~~~~~~~ls~~~s~P~w~~~~~~~~~g~~ 244 (528)
+|++++++++|+.|+. +......+|+|++|+++.+........ .. .-...|++|+|++++|.+.||.+
T Consensus 1 ~~~~a~~~~~~~~a~~~~~~~~~~~~~n~~lr~~~r~~~~~~~~---~~--------~~~~~~~~p~w~~~~~~~~~~~~ 69 (355)
T COG0144 1 VPPHAAVDETVEAAKERLGKDRAAKFVNAVLRRLERSEEALLEE---IL--------RPAFRYSHPEWLVEKLPDALGED 69 (355)
T ss_pred CCcHHHHHHHHHHHHhcccchhhhhhhhhhHhhhhhccchhhhh---hh--------cccccccCcHHHHHHHHHHcChH
Confidence 5889999999999995 466778999999999999865432111 00 00157999999999999999998
Q ss_pred HHHHHHHhcCCCCCeEEEEcCCCCCCHHHHHHHHhhcCCCCCceecccCCceEEeeCCccchhcccccccceeEeecchH
Q 009708 245 EAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESA 324 (528)
Q Consensus 245 ~~~~~~~~~~~~~~~~~rvn~~k~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~Qd~~s 324 (528)
++++++++++.+++.++|||+++ .+++++.+.|++.++.. ......+..+++..+. ++..++.|.+|+|++||.+|
T Consensus 70 ~~~~~~~a~~~~~~~~~Rvn~lk-~~~~~~~~~l~~~~~~~--~~~~~~~~~~~i~~~~-~~~~~~~~~~G~~~vQd~sS 145 (355)
T COG0144 70 EAEAIAAALLRPPPRSLRVNTLK-ADVEELLEALEEAGVLD--EKPWVLDEVLRIEASG-PIGRLPEFAEGLIYVQDEAS 145 (355)
T ss_pred HHHHHHHHcCCCCCeeEEEcCcc-CCHHHHHHHHhhccccc--ccCCccccEEEecCCC-CcccChhhhceEEEEcCHHH
Confidence 89999999999999999999999 79999999999865532 2224455667766543 45667789999999999999
Q ss_pred HHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcE-EEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccC
Q 009708 325 GLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGL-VYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS 403 (528)
Q Consensus 325 ~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~-v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~ 403 (528)
++++.+++++||++|||+||||||||+|+|++|.+.+. |+|+|+++.+++.+++|++++|+.| +.+++.|...+....
T Consensus 146 ~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~n-v~~~~~d~~~~~~~~ 224 (355)
T COG0144 146 QLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRN-VIVVNKDARRLAELL 224 (355)
T ss_pred HHHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCc-eEEEecccccccccc
Confidence 99999999999999999999999999999999988554 5999999999999999999999998 778888887665433
Q ss_pred C--CCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchhhHHHHHHHH
Q 009708 404 T--VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFL 481 (528)
Q Consensus 404 ~--~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~Ene~~v~~~l 481 (528)
. .+||.||+||||||+|+++|+||++|+++..++..++.+|.+||.+|+++|||||+|||||||++++|||++|.+||
T Consensus 225 ~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~eENE~vV~~~L 304 (355)
T COG0144 225 PGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPEENEEVVERFL 304 (355)
T ss_pred cccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchhcCHHHHHHHH
Confidence 2 35999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCceEecCCCCCCCcc----ccCCceEEEcCCCCCCCceEEEEEEec
Q 009708 482 LRHPEFSIDPADGLVPSDF----VTKHGFFFSDPIKHSLDGAFAARLVRA 527 (528)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~----~~~~g~~~~~P~~~~~dGff~a~l~k~ 527 (528)
+++++|+++++...+.... ....++++++||.|++||||+|+|+|.
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~p~~~~~dGFFia~l~k~ 354 (355)
T COG0144 305 ERHPDFELEPVRLPWGPLFEGLGSELGKTRRLYPHVHGTDGFFIAKLRKK 354 (355)
T ss_pred HhCCCceeecccccccccccccccccCCeEEECCCCCCCCCeEEEEEEeC
Confidence 9999999988743322211 123446899999998899999999985
No 8
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=100.00 E-value=5.5e-59 Score=494.09 Aligned_cols=296 Identities=27% Similarity=0.357 Sum_probs=263.2
Q ss_pred cChHHHHHHHHHHhCH-HHHHHHHHhcCCCCCeEEEEcCCCCCCHHHHHHHHhhcCCCCCceecccCCceEEeeCC---c
Q 009708 228 SHPVWMVRRWTKYLGQ-EEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFIRVKTG---L 303 (528)
Q Consensus 228 s~P~w~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~rvn~~k~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~---~ 303 (528)
.+|+||+++|.+.||. +++++++++++++++.+||||++| .+++++.+.|++.|+ ..+..+++++.+.+..+ .
T Consensus 3 ~lP~~fv~~~~~~lg~~ee~~~~l~a~~~~~~~~lRvN~lK-~~~~~~~~~L~~~g~--~~~~~p~~~~g~~~~~~~~~~ 79 (470)
T PRK11933 3 YLPDAFLTQMREAMPSHLSMDDFIAACQRPLRRSIRVNTLK-ISVADFLQLMAPYGW--TLTPIPWCEEGFWIERDDEDA 79 (470)
T ss_pred cChHHHHHHHHHHhCCcHHHHHHHHHcCCCCCeEEEEcCCc-CCHHHHHHHHHhCCC--ceeECCCCCceEEEecCcccc
Confidence 4899999999999997 689999999999999999999999 799999999988665 45667888888887642 1
Q ss_pred cchhcccccccceeEeecchHHHHHHhc--CCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHH
Q 009708 304 QNVIQAGLLKEGLCAVQDESAGLVVAVV--DPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAK 381 (528)
Q Consensus 304 ~~~~~~~~~~~G~~~~Qd~~s~l~~~~l--~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~ 381 (528)
..+..++.|..|.|++||++|++++.++ ++++|++|||+||||||||+++|++|++.|.|+|+|+++.|++.+++|++
T Consensus 80 ~~~~~~~~~~~G~~yvQd~sS~l~~~~L~~~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~ 159 (470)
T PRK11933 80 LPLGNTAEHLSGLFYIQEASSMLPVAALFADDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANIS 159 (470)
T ss_pred CCcccChHHHCCcEEEECHHHHHHHHHhccCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHH
Confidence 1356678899999999999999999998 88999999999999999999999999989999999999999999999999
Q ss_pred HcCCCccEEEEcCccccccccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEE
Q 009708 382 LHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVL 461 (528)
Q Consensus 382 ~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~L 461 (528)
++|+.+ +.+.+.|...+....+..||.||+|+||||+|+++++|+++|.++++++.+++.+|++||.+|+++|||||+|
T Consensus 160 r~G~~n-v~v~~~D~~~~~~~~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~L 238 (470)
T PRK11933 160 RCGVSN-VALTHFDGRVFGAALPETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTL 238 (470)
T ss_pred HcCCCe-EEEEeCchhhhhhhchhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEE
Confidence 999987 8889999987655445679999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCchhhHHHHHHHHhhCCCc-eEecCCCCCCC--ccccCCceEEEcCCCCCCCceEEEEEEec
Q 009708 462 VYSTCSIDPEENEERVEAFLLRHPEF-SIDPADGLVPS--DFVTKHGFFFSDPIKHSLDGAFAARLVRA 527 (528)
Q Consensus 462 vysTcs~~~~Ene~~v~~~l~~~~~~-~~~~~~~~~~~--~~~~~~g~~~~~P~~~~~dGff~a~l~k~ 527 (528)
||||||+.++|||++|++||++|+++ +++++...++. ......|++|++||.+++||||+|+|+|.
T Consensus 239 VYSTCT~~~eENE~vV~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~P~~~~~dGfFiA~lrk~ 307 (470)
T PRK11933 239 VYSTCTLNREENQAVCLWLKETYPDAVEFEPLGDLFPGAEKALTEEGFLHVFPQIYDSEGFFVARLRKT 307 (470)
T ss_pred EEECCCCCHHHHHHHHHHHHHHCCCcEEeccccccccccccccCCCCeEEECCCCCCCcceeeEEEEec
Confidence 99999999999999999999999984 45554321111 11234678999999999999999999985
No 9
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=100.00 E-value=3.5e-56 Score=448.22 Aligned_cols=421 Identities=32% Similarity=0.379 Sum_probs=338.5
Q ss_pred hcCCCCCCCccchhhhhcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHH
Q 009708 83 KKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIV 162 (528)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lv~gv~~~~~~LD~~i~~~l~~~~~~~~l~~~~~~iLrlg~~el~ 162 (528)
+..-++.++.+.+...+-++...++++.+... .+-+++.++++...+..+..-..+.-......+.+..+++ +..
T Consensus 11 ~~~~~~~~~~e~~~~~~d~~~~~d~~~~~~~~-~e~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~~l~lp~~~----~~~ 85 (460)
T KOG1122|consen 11 EYLPGSGSNPEVEDYFTDDFRDDDLDDIDLKL-IERKSRKLRKRESLEASEAEEELNTNTFEEGDPLLLPTLE----EEE 85 (460)
T ss_pred ccCcCCCCCccchhhhccccCccchhhhhhhh-hhhHHHHHHHhhcccchhhHHHHhhccccccccccCcccc----ccc
Confidence 44445556666555555555566777788777 8999999999998887777654432233445555555555 444
Q ss_pred hcC-CCCchhHHHHHHHHHHhcCCCchhhHHHHHHHHHhhcCCCCCCCCcCcCCcHHHHHHHHhhhcChHHHHHHHHHHh
Q 009708 163 KLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYL 241 (528)
Q Consensus 163 ~~~-~p~~~~inEaV~lak~~~~~~~~~fVN~VL~~~~r~~~~~~~~~~~~~~~~~~~~~~ls~~~s~P~w~~~~~~~~~ 241 (528)
.+. +| +.+.|.+...-..+....|.|.....-.+.. .-..-...++..|++-..+.+.+.+.+
T Consensus 86 ~~~~~P----~L~~v~~~~~~~~~~l~dfk~l~~~~~~~~~------------~~~~l~~~~~~~y~y~~~l~~~~~e~~ 149 (460)
T KOG1122|consen 86 EKDSVP----DLQNVDLRIVELVPVLGDFKNLKEPGRLRSE------------YCGQLKKDGAHYYAYGVFLAEKLMELF 149 (460)
T ss_pred ccccCC----ccchhhHHhhhhhhhhcchhcccccccchhh------------HHHHHHhcccceechHHHHHHHhcccc
Confidence 444 44 5566666665544444455554332221110 001123457888999999999999999
Q ss_pred CHHHHHHHHHhcCCCCCeEEEEcCCCCCCHHHHHHHHhhcCCCCCceecccCCceEEeeCCccchhcccccccceeEeec
Q 009708 242 GQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQD 321 (528)
Q Consensus 242 g~~~~~~~~~~~~~~~~~~~rvn~~k~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~Qd 321 (528)
...++.++++++..++|+++|.||+| +-+.+++..|...|+. ......|...++++..+..++-.++.|..|++.+|+
T Consensus 150 ~~~ev~~~~e~~~~~rp~tir~ntlk-~~rrd~~~~L~nrgv~-~~pl~~ws~vgl~v~~s~vpigat~e~lag~~~LQ~ 227 (460)
T KOG1122|consen 150 PLVEVYEFLEANEKPRPVTIRTNTLK-TRRRDLAVELSNRGVN-LDPLGKWSKVGLVVFDSVVPIGATPEYLAGHYMLQN 227 (460)
T ss_pred cHHHHHHHHHhhcCCCCeeEEecccc-hhhhhHHHHHHhcccC-cccccccccceEEEecCccccCCchhhcccceeecc
Confidence 99999999999999999999999998 5677788888776653 224556778888888777677788999999999999
Q ss_pred chHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccc
Q 009708 322 ESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD 401 (528)
Q Consensus 322 ~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~ 401 (528)
.+|.+++.+++|+||++||||||+|||||+++|++|+++|.|+|.|.+..++..++.|+.++|++| ..+++.|...++.
T Consensus 228 ~sS~Lpv~aL~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~n-tiv~n~D~~ef~~ 306 (460)
T KOG1122|consen 228 ASSFLPVMALDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTN-TIVSNYDGREFPE 306 (460)
T ss_pred CcccceeeecCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCc-eEEEccCcccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999997 6688899988763
Q ss_pred c-CCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchhhHHHHHHH
Q 009708 402 N-STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAF 480 (528)
Q Consensus 402 ~-~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~Ene~~v~~~ 480 (528)
. .+.+||+||+|+||||+|++.|.+.++|.++..++.++..+|++||.+|.+++++||+|||||||+.++|||.+|.++
T Consensus 307 ~~~~~~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~~ENE~vV~ya 386 (460)
T KOG1122|consen 307 KEFPGSFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITVEENEAVVDYA 386 (460)
T ss_pred cccCcccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecchhhhHHHHHHH
Confidence 3 345899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCceEecCCCCCCCcc-c-------cCCceEEEcCCCCCCCceEEEEEEec
Q 009708 481 LLRHPEFSIDPADGLVPSDF-V-------TKHGFFFSDPIKHSLDGAFAARLVRA 527 (528)
Q Consensus 481 l~~~~~~~~~~~~~~~~~~~-~-------~~~g~~~~~P~~~~~dGff~a~l~k~ 527 (528)
|.++|.+++.|..+.+.... + +...+.|++||.|.+||||+|+|+|.
T Consensus 387 L~K~p~~kL~p~~~~iG~~G~~~~~~~~psl~~~~r~yPh~hnmdgffvaKl~k~ 441 (460)
T KOG1122|consen 387 LKKRPEVKLVPTGLDIGGEGRFRGGRFHPSLKLTRRFYPHVHNMDGFFVAKLKKA 441 (460)
T ss_pred HHhCCceEeccccccCCCCCcccCcccCcchhheeeecCcccCCchHHHHHHHhh
Confidence 99999999999877665433 1 22344689999999999999999873
No 10
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=100.00 E-value=2.7e-54 Score=434.13 Aligned_cols=273 Identities=41% Similarity=0.636 Sum_probs=238.0
Q ss_pred HHHhcCCCCCeEEEEcCCCCCCHHHHHHHHhhcCCCCCceecccCCceEE-eeCCccchhcccccccceeEeecchHHHH
Q 009708 249 LMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFIR-VKTGLQNVIQAGLLKEGLCAVQDESAGLV 327 (528)
Q Consensus 249 ~~~~~~~~~~~~~rvn~~k~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~G~~~~Qd~~s~l~ 327 (528)
||+++|.+||+++|||++| .+++++.+.|++.|+ ..+..++.++.++ +......+..++.|++|++++||.+|+++
T Consensus 1 il~~~n~~~~~~iRvN~~k-~~~~~~~~~L~~~g~--~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~G~~~vQd~sS~l~ 77 (283)
T PF01189_consen 1 ILEANNCPPPVTIRVNTLK-ISREELLEELEEEGI--QLEPIPRSPDALRVIGKSPYSICSLPEFKNGLFYVQDESSQLV 77 (283)
T ss_dssp HHHHCTS--GEEEEE-TTT-SSHHHHHHHHHHTTH--EEEEETSTTCEEEEEEECSSCGGGSHHHHTTSEEEHHHHHHHH
T ss_pred CccccCCCCCeEEEECcCc-CCHHHHHHHHhhccc--ceEEcccccchhccccccccchhhchhhhCCcEEecccccccc
Confidence 6889999999999999999 799999999999775 4556666777733 22223356778899999999999999999
Q ss_pred HHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccC-CCC
Q 009708 328 VAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS-TVK 406 (528)
Q Consensus 328 ~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~-~~~ 406 (528)
+.++.+++|+.|||+||||||||+++++.|.+.|.|+|+|+++.++..++.|++++|+.+ +.+++.|.+...... ...
T Consensus 78 ~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~-v~~~~~D~~~~~~~~~~~~ 156 (283)
T PF01189_consen 78 ALALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFN-VIVINADARKLDPKKPESK 156 (283)
T ss_dssp HHHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SS-EEEEESHHHHHHHHHHTTT
T ss_pred cccccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCce-EEEEeeccccccccccccc
Confidence 999999999999999999999999999999999999999999999999999999999997 777779998874433 346
Q ss_pred CCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccC----cCCCEEEEEcCCCCchhhHHHHHHHHh
Q 009708 407 CDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLV----KPGGVLVYSTCSIDPEENEERVEAFLL 482 (528)
Q Consensus 407 fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~L----kpGG~LvysTcs~~~~Ene~~v~~~l~ 482 (528)
||.|++|+||||+|+++++|+++|.++++++..++.+|.++|++|++++ ||||+|||||||++++|||++|+.||+
T Consensus 157 fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~eENE~vV~~fl~ 236 (283)
T PF01189_consen 157 FDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSPEENEEVVEKFLK 236 (283)
T ss_dssp EEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHGGGTHHHHHHHHH
T ss_pred cchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred hCCCceEecCCCCCCCccc----cCCceEEEcCCCCCCCceEEEEEE
Q 009708 483 RHPEFSIDPADGLVPSDFV----TKHGFFFSDPIKHSLDGAFAARLV 525 (528)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~----~~~g~~~~~P~~~~~dGff~a~l~ 525 (528)
+||+|+++++......... ...++++++||.+++||||+|+|+
T Consensus 237 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~P~~~~~dGFFiA~lr 283 (283)
T PF01189_consen 237 RHPDFELVPIPLPEPPPGFKSYPIGEGCLRILPHRHGTDGFFIAKLR 283 (283)
T ss_dssp HSTSEEEECCESSTCEEESSGGCTGGGSEEESTTTSSSSSEEEEEEE
T ss_pred hCCCcEEEeccccccccccccccCCCCEEEeCCCCCCCCCEEEEEeC
Confidence 9999999887654433211 346789999999999999999996
No 11
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=100.00 E-value=3.5e-49 Score=394.49 Aligned_cols=260 Identities=32% Similarity=0.458 Sum_probs=224.1
Q ss_pred EEEcCCCCCCHHHHHHHHhhcCCCCCceecccCCceEEeeCCccchhcccccccceeEeecchHHHHHHhcCCCCCCeEE
Q 009708 261 LRANSRKGVTRADLVMQLNLLKLQVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIV 340 (528)
Q Consensus 261 ~rvn~~k~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~Qd~~s~l~~~~l~~~~g~~VL 340 (528)
+|||++| .+++++++.|++.|+.+ .... .+..+++..+...+..++.|.+|++++||.+|++++.++++++|++||
T Consensus 1 ~RvN~lk-~~~~~~~~~l~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~G~~~~qd~~s~~~~~~l~~~~g~~VL 76 (264)
T TIGR00446 1 IRVNTLK-ISVADLLQRLENRGVTL--IPWC-EEGFFEVNESPLPIGSTPEYLSGLYYIQEASSMIPPLALEPDPPERVL 76 (264)
T ss_pred CeecCCC-CCHHHHHHHHHhCCCce--eecC-CCceEEEeCCCCCcccChhHhCCeEEEECHHHHHHHHHhCCCCcCEEE
Confidence 5999999 79999999999977643 2222 445666653322366778899999999999999999999999999999
Q ss_pred EeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEcCCCCCCc
Q 009708 341 DCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLG 420 (528)
Q Consensus 341 Dl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G 420 (528)
|+|||||++|+++++++++.+.|+|+|+++.+++.+++|++++|+.+ +++++.|+..+... ...||+|++||||||+|
T Consensus 77 Dl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~-v~~~~~D~~~~~~~-~~~fD~Vl~D~Pcsg~G 154 (264)
T TIGR00446 77 DMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLN-VAVTNFDGRVFGAA-VPKFDAILLDAPCSGEG 154 (264)
T ss_pred EECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCc-EEEecCCHHHhhhh-ccCCCEEEEcCCCCCCc
Confidence 99999999999999998878899999999999999999999999976 89999998876432 34699999999999999
Q ss_pred cccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchhhHHHHHHHHhhCCCceEecCCCC-CCCc
Q 009708 421 VLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPADGL-VPSD 499 (528)
Q Consensus 421 ~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~Ene~~v~~~l~~~~~~~~~~~~~~-~~~~ 499 (528)
+++++|+.+|.++.+++..+..+|.++|++++++|||||+|||||||++++|||++|.+||++|+++.+.+.... .+..
T Consensus 155 ~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~~Ene~vv~~~l~~~~~~~~~~~~~~~~~~~ 234 (264)
T TIGR00446 155 VIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEPEENEAVVDYLLEKRPDVVEELPKGDEFFGA 234 (264)
T ss_pred ccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChHHHHHHHHHHHHhCCCcEEeccCCcccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999886632211 1110
Q ss_pred ---cccCCceEEEcCCCCCCCceEEEEEEe
Q 009708 500 ---FVTKHGFFFSDPIKHSLDGAFAARLVR 526 (528)
Q Consensus 500 ---~~~~~g~~~~~P~~~~~dGff~a~l~k 526 (528)
.....++++++||.|++||||+|+|+|
T Consensus 235 ~~~~~~~~~~~r~~P~~~~~dGfF~a~l~k 264 (264)
T TIGR00446 235 NKGKEEVKGALRVFPQIYDCEGFFVAKLRK 264 (264)
T ss_pred cccccccCCeEEECCCCCCCCcEEEEEEEC
Confidence 112456789999999999999999986
No 12
>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.97 E-value=3.9e-30 Score=257.54 Aligned_cols=282 Identities=26% Similarity=0.378 Sum_probs=219.7
Q ss_pred CHHHHHHHHHhcCCCCCeEEEEcCCCCCCHHHHHHHHhhcCCCC-------CceecccCCceEEeeCCccchhccccccc
Q 009708 242 GQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKLQV-------PHELSLHLDEFIRVKTGLQNVIQAGLLKE 314 (528)
Q Consensus 242 g~~~~~~~~~~~~~~~~~~~rvn~~k~~~~~~~~~~L~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (528)
+.+.++++....+.++|.++|+||++ .+.++....|..++... .+-.+++.+..+.+.. ...+...++|+.
T Consensus 115 ~~~~~~~l~~t~~~~~pr~vRINtlk-~~~~e~~~~L~~e~~~~~~~l~p~~~~~D~~~~~ll~~~~-~n~i~~~~ly~~ 192 (413)
T KOG2360|consen 115 KVKSLRELKLTMKIPLPRYVRINTLK-GTTDEALDYLDYEKWKMITELKPDEFYVDPHVENLIIFPP-SNFIVEHELYKN 192 (413)
T ss_pred hHHHHHHhhccCCCCCceeEEeeccc-CchhhhhhhhhhhhhhhhhhcCCcceeccccchhhcccCC-Ccceeecccccc
Confidence 34455555543446889999999999 57777777777644321 0112333344444432 223556789999
Q ss_pred ceeEeecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcC
Q 009708 315 GLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHA 394 (528)
Q Consensus 315 G~~~~Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~ 394 (528)
|.+++||.+|.+++.++++.+|+.|+|.||+||.+|+|+|..|.+.|+|+|+|.++.+.+.++..+...|+++ ++.+.+
T Consensus 193 g~~ilqd~asclpA~ll~p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~~-~~~~~~ 271 (413)
T KOG2360|consen 193 GKFILQDKASCLPAHLLDPRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVSI-VESVEG 271 (413)
T ss_pred CceEEechhhcchhhhcCCCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCCc-cccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999986 777799
Q ss_pred ccccccc-cCCCCCCEEEEcCCCCCCccccCCchhh--ccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCch
Q 009708 395 DLRTFAD-NSTVKCDKVLLDAPCSGLGVLSKRADLR--WNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPE 471 (528)
Q Consensus 395 D~~~~~~-~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~--~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~ 471 (528)
|+..... ..-...-.||+||+|||+|+..+.-... -..+++.++.+...|..++++|+.+-.. -.++|||||++.+
T Consensus 272 df~~t~~~~~~~~v~~iL~DpscSgSgm~~r~~~~~~~e~~~~~rL~~L~~fq~~~~~hal~fp~~-k~vvystcs~~re 350 (413)
T KOG2360|consen 272 DFLNTATPEKFRDVTYILVDPSCSGSGMVSRQDEDPGAETESPERLENLQSFQIRILKHALTFPNL-KRLVYSTCSLHRE 350 (413)
T ss_pred cccCCCCcccccceeEEEeCCCCCCCccccceeeccCCCcccHHHHHHHHHHHHHHHHHHhcCCch-hheeeecchhhhh
Confidence 9987521 1124467899999999999987765554 3456788999999999999999985443 4799999999999
Q ss_pred hhHHHHHHHHhhCCCce-Eec--CCCCCCC----ccccCCceEEEcCCCCCCCceEEEEEEec
Q 009708 472 ENEERVEAFLLRHPEFS-IDP--ADGLVPS----DFVTKHGFFFSDPIKHSLDGAFAARLVRA 527 (528)
Q Consensus 472 Ene~~v~~~l~~~~~~~-~~~--~~~~~~~----~~~~~~g~~~~~P~~~~~dGff~a~l~k~ 527 (528)
|||++|.+.|...|++. +.+ +.+.++. .+....++.+..|...+++|||+|.+.|+
T Consensus 351 ene~vv~d~l~~~p~~~~l~~kK~~p~w~~rg~~~~~~~e~~lr~~p~~~~~~gffva~fer~ 413 (413)
T KOG2360|consen 351 ENEQVVQEVLQQNPDAKRLAPKKVLPAWPHRGLSTFSGAEHCLRASPKSTLTIGFFVALFERV 413 (413)
T ss_pred hhhHHHHHHHhhChhHhhhchhhcchhhhhcCCccccccccceecccCCCCcceEEEEEeecC
Confidence 99999999999888643 333 2223332 22335677899999999999999988763
No 13
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=2.2e-30 Score=259.77 Aligned_cols=182 Identities=33% Similarity=0.479 Sum_probs=154.7
Q ss_pred cccceeEeecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCC---CcEEEEEcCChHHHHHHHHHHHHcCCCcc
Q 009708 312 LKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSG---QGLVYAIDINKGRLRILNETAKLHQVNSV 388 (528)
Q Consensus 312 ~~~G~~~~Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~---~~~v~avD~s~~~l~~~~~n~~~~g~~~~ 388 (528)
..-|.++.||..|++++.+|+++||++||||||+||+||+++.+.+.. .|.|+|.|.++.|+..+...+++..-.+
T Consensus 132 ~~vg~i~rqeavSmlPvL~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~- 210 (375)
T KOG2198|consen 132 TGVGNIYRQEAVSMLPVLALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPN- 210 (375)
T ss_pred cccccchhhhhhhccchhhcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcc-
Confidence 447899999999999999999999999999999999999999887753 3589999999999999999998877665
Q ss_pred EEEEcCcccccccc--------CCCCCCEEEEcCCCCCCccccCCchhhcc-CCHHHHHHHHHHHHHHHHHHhccCcCCC
Q 009708 389 IRTIHADLRTFADN--------STVKCDKVLLDAPCSGLGVLSKRADLRWN-RRLEDMEELKILQDELLDAASLLVKPGG 459 (528)
Q Consensus 389 i~~~~~D~~~~~~~--------~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~-~~~~~~~~l~~~q~~lL~~a~~~LkpGG 459 (528)
+.+.+.|+..++.. ....||+||+|+||||.|++++++++.-. +....-..+..+|..||.++.++||+||
T Consensus 211 ~~v~~~~~~~~p~~~~~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG 290 (375)
T KOG2198|consen 211 LLVTNHDASLFPNIYLKDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGG 290 (375)
T ss_pred eeeecccceeccccccccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCC
Confidence 66777777655432 23579999999999999999999998432 4444446788899999999999999999
Q ss_pred EEEEEcCCCCchhhHHHHHHHHhhCC-CceEecCCC
Q 009708 460 VLVYSTCSIDPEENEERVEAFLLRHP-EFSIDPADG 494 (528)
Q Consensus 460 ~LvysTcs~~~~Ene~~v~~~l~~~~-~~~~~~~~~ 494 (528)
+|||||||+.|.|||.||+..|++.. .+++.....
T Consensus 291 ~lVYSTCSLnpieNEaVV~~~L~~~~~~~~lv~~~~ 326 (375)
T KOG2198|consen 291 RLVYSTCSLNPIENEAVVQEALQKVGGAVELVDVSG 326 (375)
T ss_pred EEEEeccCCCchhhHHHHHHHHHHhcCcccceeecc
Confidence 99999999999999999999999874 455555443
No 14
>COG0781 NusB Transcription termination factor [Transcription]
Probab=99.95 E-value=3.1e-27 Score=213.67 Aligned_cols=134 Identities=22% Similarity=0.299 Sum_probs=110.6
Q ss_pred CChHHHHHHHHHHHHHhCCC-chHHHhhcCCCCCCCccchhhhhcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009708 57 VSPHRAVSAVRLMRIQFGGA-FADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICL 135 (528)
Q Consensus 57 ~~~aR~~A~~~Ly~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lv~gv~~~~~~LD~~i~~ 135 (528)
|+.+|+.|+|+||+|+.++. .++.+.+.. ...+.....+....+..|+..|+.||.+|+..||.+|.+
T Consensus 10 R~~aR~~avq~Ly~~~~~~~~~~~~~~~~~-----------~~~~~~~d~~~~~~~~~~~~~lv~gv~~~~~~iD~~I~~ 78 (151)
T COG0781 10 RRQARELAVQALYQWELSGSVSAEDILEDI-----------EEEFVENELDIELADSEYFRSLVKGVLENQEELDELISP 78 (151)
T ss_pred HHHHHHHHHHHHHHHHhcCCcchhHHHHHH-----------HHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34789999999999999665 222232211 000000011222388999999999999999999999999
Q ss_pred hccCCCCCCcccHHHHHHHHHHHHHHHhcC-CCCchhHHHHHHHHHHhcCCCchhhHHHHHHHHHhhc
Q 009708 136 LCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLK 202 (528)
Q Consensus 136 ~l~~~~~~~~l~~~~~~iLrlg~~el~~~~-~p~~~~inEaV~lak~~~~~~~~~fVN~VL~~~~r~~ 202 (528)
++++ |+++||++++|+|||+|+|||+|.+ +|..++|||||+|||.|+++++++||||||+++++..
T Consensus 79 ~L~~-w~~~rL~~verAILRla~yEl~~~~dvP~~VvInEaielaK~f~~e~s~kFINgVLd~i~~~~ 145 (151)
T COG0781 79 HLKK-WSLERLDLVERAILRLALYELLFRDDVPYKVVINEAIELAKKFSGEDSHKFVNGVLDKIAKKL 145 (151)
T ss_pred HHcc-CCHHHhhHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHhCCCCchHHHHHHHHHHHHHh
Confidence 9998 9999999999999999999999976 9999999999999999999999999999999999864
No 15
>PF01029 NusB: NusB family; InterPro: IPR006027 This domain is found in a number of functionally different proteins: NusB a prokaryotic transcription factor involved in antitermination TIM44, the mitochondrial inner membrane translocase subunit RsmB, the 16S rRNA m5C967 methyltransferase NusB is a prokaryotic transcription factor involved in antitermination processes, during which it interacts with the boxA portion of the mRNA nut site. Previous studies have shown that NusB exhibits an all-helical fold, and that the protein from Escherichia coli forms monomers, while Mycobacterium tuberculosis NusB is a dimer. The functional significance of NusB dimerization is unknown. An N-terminal arginine-rich sequence is the probable RNA binding site, exhibiting aromatic residues as potential stacking partners for the RNA bases. The RNA binding region is hidden in the subunit interface of dimeric NusB proteins, such as NusB from M. tuberculosis, suggesting that such dimers have to undergo a considerable conformational change or dissociate for engagement with RNA. In certain organisms, dimerization may be employed to package NusB in an inactive form until recruitment into antitermination complexes [, ]. The antitermination proteins of E. coli are recruited in the replication cycle of Bacteriophage lambda, where they play an important role in switching from the lysogenic to the lytic cycle.; GO: 0003723 RNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1SQG_A 1SQF_A 3IMQ_A 3D3C_C 3D3B_A 1EY1_A 1EYV_A 1TZV_A 1TZT_B 1TZX_B ....
Probab=99.94 E-value=3e-27 Score=212.48 Aligned_cols=130 Identities=26% Similarity=0.460 Sum_probs=109.0
Q ss_pred hHHHHHHHHHHHHHhCCCchHHHhhcCCCCCCCccchhhhhcc--cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009708 59 PHRAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLG--FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLL 136 (528)
Q Consensus 59 ~aR~~A~~~Ly~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~~lv~gv~~~~~~LD~~i~~~ 136 (528)
++|+.|+|+||+++.++.. +..... +....+. .....+++.|++|+++|++|+++++..||++|+++
T Consensus 2 ~aR~~A~q~L~~~~~~~~~-~~~~~~----------~~~~~l~~~~~~~~~~~~d~~~~~~lv~gv~~~~~~ld~~i~~~ 70 (134)
T PF01029_consen 2 KARELALQALYQVEFNDEE-DEEEGQ----------FLDEALEEELEESELSEEDRAFARELVYGVLRNKEELDALISKL 70 (134)
T ss_dssp HHHHHHHHHHHHHHHHTSS-HHHHHH----------HHHHHHHHHHHHTTSTHHHHHHHHHHHHHHHHTHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHccCCc-hhhhhh----------hHHHHHhhcccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999766655 111111 1111111 12356899999999999999999999999999998
Q ss_pred ccCCCCCCcccHHHHHHHHHHHHHHHhc-CCCCchhHHHHHHHHHHhcCCCchhhHHHHHHHHHh
Q 009708 137 CHDEKTFSSMEPLLLQILRIGFYEIVKL-DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVL 200 (528)
Q Consensus 137 l~~~~~~~~l~~~~~~iLrlg~~el~~~-~~p~~~~inEaV~lak~~~~~~~~~fVN~VL~~~~r 200 (528)
+++ |+++++++++++|||+|+|||+|+ ++|++++|||||++||+|+++++++|||||||+++|
T Consensus 71 ~~~-~~~~rl~~~~~~iLrla~~El~~~~~~p~~v~InEaVelak~~~~~~~~~fVNaVL~~~~R 134 (134)
T PF01029_consen 71 LKN-WPLERLPPVDRAILRLAIYELLFLDDIPPHVAINEAVELAKKYGDEKSAGFVNAVLRRIAR 134 (134)
T ss_dssp STS-STGGGSGHHHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHH
T ss_pred hcc-CCccccCHHHHHHHHHHHHHHHhcCCCCccchHHHHHHHHHHhCCCCcchhHHHHHHHhhC
Confidence 855 999999999999999999999998 799999999999999999999999999999999986
No 16
>cd00619 Terminator_NusB Transcription termination factor NusB (N protein-Utilization Substance B). NusB plays a key role in the regulation of ribosomal RNA biosynthesis in eubacteria by modulating the efficiency of transcriptional antitermination. NusB along with other Nus factors (NusA, NusE/S10 and NusG) forms the core complex with the boxA element of the nut site of the rRNA operons. These interactions help RNA polymerase to counteract polarity during transcription of rRNA operons and allow stable antitermination. The transcription antitermination system can be appropriated by some bacteriophages such as lambda, which use the system to switch between the lysogenic and lytic modes of phage propagation.
Probab=99.94 E-value=1.8e-26 Score=206.30 Aligned_cols=127 Identities=20% Similarity=0.215 Sum_probs=114.0
Q ss_pred ChHHHHHHHHHHHHHhCCCchHHHhhcCCCCCCCccchhhhhcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 009708 58 SPHRAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLC 137 (528)
Q Consensus 58 ~~aR~~A~~~Ly~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lv~gv~~~~~~LD~~i~~~l 137 (528)
+.+|+.|+|+||+++..+.+.+.+.+.. .....+++.|++|+++||+|++++...||++|++++
T Consensus 2 ~~~R~~a~~~L~~~~~~~~~~~~~l~~~----------------~~~~~~~~~d~~~~~~lv~gvlr~~~~ld~ii~~~l 65 (130)
T cd00619 2 RRARELAVQALYAWELAPEILAEVVSLL----------------ELLQYKSKKVLPFALKLVRGVLENIEEIDELIEKHL 65 (130)
T ss_pred hHHHHHHHHHHHHHHhcCCCHHHHHHHH----------------HHhcccchhHHHHHHHHHHHHHHhHHHHHHHHHHHc
Confidence 3679999999999999888877766542 112246788999999999999999999999999999
Q ss_pred cCCCCCCcccHHHHHHHHHHHHHHHhcC-CCCchhHHHHHHHHHHhcCCCchhhHHHHHHHHHhh
Q 009708 138 HDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLL 201 (528)
Q Consensus 138 ~~~~~~~~l~~~~~~iLrlg~~el~~~~-~p~~~~inEaV~lak~~~~~~~~~fVN~VL~~~~r~ 201 (528)
++ |++.++++++++|||+|+||++|++ +|++++|||+|+|||+|+++++++||||||+++.++
T Consensus 66 ~~-~~~~~l~~~~~~iLria~~el~~~~~~p~~~vinEaV~lak~~~~~~~~~fVNaVLr~i~r~ 129 (130)
T cd00619 66 RN-WSLDRLAIVERAILRLAVYELLFLPDVPHPVVINEAIELAKRFGGDDSHKFVNGVLDKIAKD 129 (130)
T ss_pred cC-CCHHHhhHHHHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHHCCCcchhHHHHHHHHHhhc
Confidence 75 8899999999999999999999987 999999999999999999999999999999999874
No 17
>PRK00202 nusB transcription antitermination protein NusB; Reviewed
Probab=99.94 E-value=2.5e-26 Score=207.20 Aligned_cols=128 Identities=24% Similarity=0.343 Sum_probs=115.5
Q ss_pred ChHHHHHHHHHHHHHhCCCchHHHhhcCCCCCCCccchhhhhcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 009708 58 SPHRAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLC 137 (528)
Q Consensus 58 ~~aR~~A~~~Ly~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lv~gv~~~~~~LD~~i~~~l 137 (528)
+.+|+.|+|+||+++..+.+.+.+.+.. +....+++.|++|+++||+|+++|+..||++|++++
T Consensus 4 ~~~R~~a~~~L~~~~~~~~~~~~~l~~~----------------~~~~~~~~~d~~~~~~lv~gvlr~~~~lD~ii~~~l 67 (137)
T PRK00202 4 RKAREAAVQALYQWELSGNDIAEIIEAQ----------------LLEEQYDKADPAYFRSLVRGVVENQAELDELISPYL 67 (137)
T ss_pred HHHHHHHHHHHHHHHccCCCHHHHHHHH----------------HHhcccchhhHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 4789999999999999888887766542 122247789999999999999999999999999999
Q ss_pred cCCCCCCcccHHHHHHHHHHHHHHHhc-CCCCchhHHHHHHHHHHhcCCCchhhHHHHHHHHHhhc
Q 009708 138 HDEKTFSSMEPLLLQILRIGFYEIVKL-DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLK 202 (528)
Q Consensus 138 ~~~~~~~~l~~~~~~iLrlg~~el~~~-~~p~~~~inEaV~lak~~~~~~~~~fVN~VL~~~~r~~ 202 (528)
++ |+++++++++++|||+|+||++|+ ++|++++|||+|++||.|++++.++|||||||++.++.
T Consensus 68 ~~-~~~~~l~~~~~~iLr~a~~Ell~~~~~p~~~vinEaV~lak~~~~~~~~~fVNaVLr~i~r~~ 132 (137)
T PRK00202 68 KD-WTLERLDPVERAILRLALYELLFRDDVPYKVVINEAIELAKKFGDEDSHKFVNGVLDKIAKEL 132 (137)
T ss_pred cC-CCHHHhhHHHHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHHCCCCcchhHHHHHHHHHHHh
Confidence 66 999999999999999999999998 69999999999999999999999999999999999864
No 18
>TIGR01951 nusB transcription antitermination factor NusB. A transcription antitermination complex active in many bacteria was designated N-utilization substance (Nus) in E. coli because of its interaction with phage lambda protein N. This model represents NusB. Other components are NusA and NusG. NusE is, in fact, ribosomal protein S10.
Probab=99.94 E-value=4.3e-26 Score=203.58 Aligned_cols=126 Identities=25% Similarity=0.386 Sum_probs=113.7
Q ss_pred ChHHHHHHHHHHHHHhCCCchHHHhhcCCCCCCCccchhhhhcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 009708 58 SPHRAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLC 137 (528)
Q Consensus 58 ~~aR~~A~~~Ly~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lv~gv~~~~~~LD~~i~~~l 137 (528)
+.+|+.|+++||+++..+.+.+.+.+.. .+..++++.|++|++++++|+++++..||++|++++
T Consensus 2 ~~~R~~a~~~l~~~~~~~~~~~~~l~~~----------------~~~~~l~~~d~~~~~~lv~~~lr~~~~ld~~i~~~~ 65 (129)
T TIGR01951 2 RKARELALQALYQWELSGNDVEEIIEEF----------------LEERELDEEDREYFLELVRGVLENQEEIDELISPHL 65 (129)
T ss_pred hHHHHHHHHHHHHHHcCCCCHHHHHHHH----------------HHhcccchhHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 4679999999999998888887776542 122357889999999999999999999999999999
Q ss_pred cCCCCCCcccHHHHHHHHHHHHHHHhc-CCCCchhHHHHHHHHHHhcCCCchhhHHHHHHHHHh
Q 009708 138 HDEKTFSSMEPLLLQILRIGFYEIVKL-DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVL 200 (528)
Q Consensus 138 ~~~~~~~~l~~~~~~iLrlg~~el~~~-~~p~~~~inEaV~lak~~~~~~~~~fVN~VL~~~~r 200 (528)
++ |+++++++++++|||+|+||++|+ ++|++++|||+|++||.++++++++|||||||++++
T Consensus 66 ~~-~~~~~l~~~~~~iLr~a~~el~~~~~~p~~avineaV~lak~~~~~~~~~fVNaVLr~i~r 128 (129)
T TIGR01951 66 KD-WSLERLDPVDRAILRLAAYELLYRPDVPYKVVINEAVELAKKFGDEDSHKFVNGVLDKIAK 128 (129)
T ss_pred cC-CCHHHhhHHHHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHHCCCCchhhHHHHHHHHhh
Confidence 63 999999999999999999999999 699999999999999999999999999999999986
No 19
>cd00620 Methyltransferase_Sun N-terminal RNA binding domain of the methyltransferase Sun. The rRNA-specific 5-methylcytidine transferase Sun, also known as RrmB or Fmu shares the RNA-binding non-catalytic domain with the transcription termination factor NusB. The precise biological role of this domain in Sun is unknown, although it is likely to be involved in sequence-specific RNA binding. The C-terminal methyltransferase domain of Sun has been shown to catalyze formation of m5C at position 967 of 16S rRNA in Escherichia coli.
Probab=99.93 E-value=1.2e-25 Score=199.88 Aligned_cols=123 Identities=34% Similarity=0.502 Sum_probs=109.4
Q ss_pred HHHHHHHHHHHHHhCCCchHHHhhcCCCCCCCccchhhhhcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 009708 60 HRAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHD 139 (528)
Q Consensus 60 aR~~A~~~Ly~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lv~gv~~~~~~LD~~i~~~l~~ 139 (528)
+|+.|+|+||+++..+.+.+.+.... ..... ++.|++|+++|++|+++|+.+||++|+++++
T Consensus 3 ~R~~A~~~L~~v~~~~~~~~~~l~~~----------------~~~~~-~~~d~~~~~~lv~g~~r~~~~ld~~i~~~l~- 64 (126)
T cd00620 3 ARSTAAEVLRDVLQRGASLNAVLSAL----------------QKKDK-SDRDRGLATELVYGTLRWLALLDWIINPLLK- 64 (126)
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHH----------------HHhcC-CHHHHHHHHHHHHHHHHhHHHHHHHHHHHhC-
Confidence 69999999999988888877766542 11112 6789999999999999999999999999997
Q ss_pred CCCCCcccHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCCchhhHHHHHHHHHhh
Q 009708 140 EKTFSSMEPLLLQILRIGFYEIVKLDMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLL 201 (528)
Q Consensus 140 ~~~~~~l~~~~~~iLrlg~~el~~~~~p~~~~inEaV~lak~~~~~~~~~fVN~VL~~~~r~ 201 (528)
|++.++++++++|||+|+|||+|+++|++++|||+|++||+++++++++|||||||++.|+
T Consensus 65 -~~~~~~~~~~~~iLr~a~~el~~~~~p~~avvneaVelak~~~~~~~~~fVNaVLr~i~r~ 125 (126)
T cd00620 65 -KPDVGKDPDVRNLLRLGLYQLLYLDVPPHAAVDETVEIAKIRKDLGRAGLVNAVLRRFERE 125 (126)
T ss_pred -CCccccCHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhCCCchhhHHHHHHHHHhcc
Confidence 5567899999999999999999999999999999999999999999999999999999873
No 20
>cd00447 NusB_Sun RNA binding domain of NusB (N protein-Utilization Substance B) and Sun (also known as RrmB or Fmu) proteins. This family includes two orthologous groups exemplified by the transcription termination factor NusB and the N-terminal domain of the rRNA-specific 5-methylcytidine transferase (m5C-methyltransferase) Sun. The NusB protein plays a key role in the regulation of ribosomal RNA biosynthesis in eubacteria by modulating the efficiency of transcriptional antitermination. NusB along with other Nus factors (NusA, NusE/S10 and NusG) forms the core complex with the boxA element of the nut site of the rRNA operons. These interactions help RNA polymerase to counteract polarity during transcription of rRNA operons and allow stable antitermination. The transcription antitermination system can be appropriated by some bacteriophages such as lambda, which use the system to switch between the lysogenic and lytic modes of phage propagation. The m5C-methyltransferase Sun shares the
Probab=99.89 E-value=9.8e-23 Score=181.87 Aligned_cols=124 Identities=24% Similarity=0.337 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHHHhC-CCchHHHhhcCCCCCCCccchhhhhcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 009708 60 HRAVSAVRLMRIQFG-GAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCH 138 (528)
Q Consensus 60 aR~~A~~~Ly~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lv~gv~~~~~~LD~~i~~~l~ 138 (528)
+|+.|+++||+++.. +...+.+.... . ...+++.|++|+++|++||++++..||++|+++++
T Consensus 2 ~R~~a~~~L~~~~~~~~~~~~~~~~~~----------------~-~~~~~~~d~~~~~~lv~gv~r~~~~ld~~i~~~~~ 64 (129)
T cd00447 2 AREIAFQALYQVEIRNGISLEAVLSAL----------------E-KLQLAKKDRPFALELVYGVLRNLPELDDIISPLLK 64 (129)
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHH----------------H-HcccchhHHHHHHHHHHHHHHhHHHHHHHHHHHcc
Confidence 599999999999887 77776666442 1 12466789999999999999999999999999997
Q ss_pred CCCCCCcccHHHHHHHHHHHHHHHhcC--CCCchhHHHHHHHHHHhcCCCchhhHHHHHHHHHhh
Q 009708 139 DEKTFSSMEPLLLQILRIGFYEIVKLD--MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLL 201 (528)
Q Consensus 139 ~~~~~~~l~~~~~~iLrlg~~el~~~~--~p~~~~inEaV~lak~~~~~~~~~fVN~VL~~~~r~ 201 (528)
+ |+++|++.+++.||+++.+|+.++. +|++++|||+|++||++++++.++|||||||++.++
T Consensus 65 ~-~~~~r~~~~~~~il~l~~~el~~~~~~~p~~~vineaVelak~~~~~~~~~fVNaVLr~~~r~ 128 (129)
T cd00447 65 K-WLLDRLDKVDRAILRLLLYELYQLLYDVPPPVAINEAVELAKRFGDDDSAKFVNGVLRRIAKE 128 (129)
T ss_pred C-CChhhhhHHHHHHHHHHHHHHHhCcCCCCchhHHHHHHHHHHHHCCCCcchhHHHHHHHHhhc
Confidence 6 9999999999999999999988864 899999999999999999999999999999999874
No 21
>PRK09634 nusB transcription antitermination protein NusB; Provisional
Probab=99.85 E-value=8.8e-21 Score=179.60 Aligned_cols=93 Identities=25% Similarity=0.347 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCCch
Q 009708 109 DRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPPYAVVDENVRLAKVALRPGAG 188 (528)
Q Consensus 109 ~~d~~~~~~lv~gv~~~~~~LD~~i~~~l~~~~~~~~l~~~~~~iLrlg~~el~~~~~p~~~~inEaV~lak~~~~~~~~ 188 (528)
+.+++|+++||+||++++..||++|.+++++ |++.++++++++|||+|+|||+|+++|++++|||||++||+|++++++
T Consensus 110 ~~~r~~a~~Lv~gvlr~~~~LD~iI~~~l~~-W~l~rL~~idr~ILRlavyELl~l~~P~~vaINEAVeLAK~~~~~~~~ 188 (207)
T PRK09634 110 EEVREYALERIGAVIRNRKEIDQLLDTVMVG-WQLKRLPRIDRDILRLAVVEILFLNTPAAVAINEAVELAKRYSDEQGR 188 (207)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhcc-ccccCCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhCCCccc
Confidence 8999999999999999999999999999976 999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhhc
Q 009708 189 NLVNGILRKLVLLK 202 (528)
Q Consensus 189 ~fVN~VL~~~~r~~ 202 (528)
+|||||||++.+..
T Consensus 189 ~FVNaVLrri~r~~ 202 (207)
T PRK09634 189 RFINGVLRRLQDAL 202 (207)
T ss_pred chHHHHHHHHHHHh
Confidence 99999999999864
No 22
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.73 E-value=6.7e-17 Score=167.75 Aligned_cols=163 Identities=23% Similarity=0.271 Sum_probs=131.2
Q ss_pred cccccceeEeecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCC-cc
Q 009708 310 GLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVN-SV 388 (528)
Q Consensus 310 ~~~~~G~~~~Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~-~~ 388 (528)
...+.|.|..|..+...+...+. |++|||+||.||++++++|. ++..+||+||+|...++.+++|++.+|++ ..
T Consensus 195 ~g~kTGfFlDqR~~R~~l~~~~~---GkrvLNlFsYTGgfSv~Aa~--gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~ 269 (393)
T COG1092 195 DGLKTGFFLDQRDNRRALGELAA---GKRVLNLFSYTGGFSVHAAL--GGASEVTSVDLSKRALEWARENAELNGLDGDR 269 (393)
T ss_pred CcccceeeHHhHHHHHHHhhhcc---CCeEEEecccCcHHHHHHHh--cCCCceEEEeccHHHHHHHHHHHHhcCCCccc
Confidence 45789999999999988888765 89999999999999999986 45669999999999999999999999986 45
Q ss_pred EEEEcCccccccccC---CCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEc
Q 009708 389 IRTIHADLRTFADNS---TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465 (528)
Q Consensus 389 i~~~~~D~~~~~~~~---~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysT 465 (528)
+.++++|++++.... +.+||+|++|||.. .+++ .......+.+..++..+.++|+|||+++.||
T Consensus 270 ~~~i~~Dvf~~l~~~~~~g~~fDlIilDPPsF-----~r~k--------~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s 336 (393)
T COG1092 270 HRFIVGDVFKWLRKAERRGEKFDLIILDPPSF-----ARSK--------KQEFSAQRDYKDLNDLALRLLAPGGTLVTSS 336 (393)
T ss_pred eeeehhhHHHHHHHHHhcCCcccEEEECCccc-----ccCc--------ccchhHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 789999999987654 45899999999994 3433 3445667778899999999999999999999
Q ss_pred CCCCchhh--HHHHH-HHHhhCCCceEe
Q 009708 466 CSIDPEEN--EERVE-AFLLRHPEFSID 490 (528)
Q Consensus 466 cs~~~~En--e~~v~-~~l~~~~~~~~~ 490 (528)
|+.+-... .+.+. .+.......+..
T Consensus 337 ~~~~~~~~~f~~~i~~a~~~~~~~~~~~ 364 (393)
T COG1092 337 CSRHFSSDLFLEIIARAAAAAGRRAQEI 364 (393)
T ss_pred cCCccCHHHHHHHHHHHHHhcCCcEEEe
Confidence 99665443 23333 333444445444
No 23
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.72 E-value=1.5e-16 Score=167.27 Aligned_cols=165 Identities=18% Similarity=0.204 Sum_probs=125.1
Q ss_pred ccccccceeEeecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCC-c
Q 009708 309 AGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVN-S 387 (528)
Q Consensus 309 ~~~~~~G~~~~Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~-~ 387 (528)
...++.|+|..|.....++..+. +|.+|||+|||+|+++++++. .+..+|+++|+|+.+++.+++|++.+|++ .
T Consensus 197 ~~g~ktG~flDqr~~R~~~~~~~---~g~rVLDlfsgtG~~~l~aa~--~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~ 271 (396)
T PRK15128 197 QGGHKTGYYLDQRDSRLATRRYV---ENKRVLNCFSYTGGFAVSALM--GGCSQVVSVDTSQEALDIARQNVELNKLDLS 271 (396)
T ss_pred ccccccCcChhhHHHHHHHHHhc---CCCeEEEeccCCCHHHHHHHh--CCCCEEEEEECCHHHHHHHHHHHHHcCCCCC
Confidence 35678999999987777766553 478999999999999987664 44569999999999999999999999986 3
Q ss_pred cEEEEcCcccccccc---CCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 388 VIRTIHADLRTFADN---STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 388 ~i~~~~~D~~~~~~~---~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
+++++++|+.++... ..++||+|++|||+... +...+......+.+++..+.++|+|||.|+++
T Consensus 272 ~v~~i~~D~~~~l~~~~~~~~~fDlVilDPP~f~~-------------~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~ 338 (396)
T PRK15128 272 KAEFVRDDVFKLLRTYRDRGEKFDVIVMDPPKFVE-------------NKSQLMGACRGYKDINMLAIQLLNPGGILLTF 338 (396)
T ss_pred cEEEEEccHHHHHHHHHhcCCCCCEEEECCCCCCC-------------ChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 589999999887532 13579999999999431 11344455556788899999999999999999
Q ss_pred cCCCCc--hhhHHHHHHHHh-hCCCceEec
Q 009708 465 TCSIDP--EENEERVEAFLL-RHPEFSIDP 491 (528)
Q Consensus 465 Tcs~~~--~Ene~~v~~~l~-~~~~~~~~~ 491 (528)
+||.+- ++-.+.+.+... ....+++..
T Consensus 339 scs~~~~~~~f~~~v~~aa~~~~~~~~~l~ 368 (396)
T PRK15128 339 SCSGLMTSDLFQKIIADAAIDAGRDVQFIE 368 (396)
T ss_pred eCCCcCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 999554 333445544433 233455443
No 24
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=99.66 E-value=3.2e-16 Score=156.90 Aligned_cols=143 Identities=27% Similarity=0.369 Sum_probs=108.2
Q ss_pred cccccceeEeecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCC-cc
Q 009708 310 GLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVN-SV 388 (528)
Q Consensus 310 ~~~~~G~~~~Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~-~~ 388 (528)
...+.|+|..|.+...++..... |.+|||++|.+|+++++++. ++..+|++||.|...++.+++|++.+|++ ..
T Consensus 101 ~gqktGlFlDqR~nR~~v~~~~~---gkrvLnlFsYTGgfsv~Aa~--gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~ 175 (286)
T PF10672_consen 101 DGQKTGLFLDQRENRKWVRKYAK---GKRVLNLFSYTGGFSVAAAA--GGAKEVVSVDSSKRALEWAKENAALNGLDLDR 175 (286)
T ss_dssp SSSSTSS-GGGHHHHHHHHHHCT---TCEEEEET-TTTHHHHHHHH--TTESEEEEEES-HHHHHHHHHHHHHTT-CCTC
T ss_pred CCCcceEcHHHHhhHHHHHHHcC---CCceEEecCCCCHHHHHHHH--CCCCEEEEEeCCHHHHHHHHHHHHHcCCCccc
Confidence 45789999999999988887753 78999999999999998875 45568999999999999999999999986 56
Q ss_pred EEEEcCcccccccc--CCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcC
Q 009708 389 IRTIHADLRTFADN--STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTC 466 (528)
Q Consensus 389 i~~~~~D~~~~~~~--~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTc 466 (528)
++++++|+.++... ..++||+|++|||..+-|. + . +.+.+.+++..+.++|+|||.|+.+||
T Consensus 176 ~~~~~~Dvf~~l~~~~~~~~fD~IIlDPPsF~k~~--------~-----~---~~~~y~~L~~~a~~ll~~gG~l~~~sc 239 (286)
T PF10672_consen 176 HRFIQGDVFKFLKRLKKGGRFDLIILDPPSFAKSK--------F-----D---LERDYKKLLRRAMKLLKPGGLLLTCSC 239 (286)
T ss_dssp EEEEES-HHHHHHHHHHTT-EEEEEE--SSEESST--------C-----E---HHHHHHHHHHHHHHTEEEEEEEEEEE-
T ss_pred eEEEecCHHHHHHHHhcCCCCCEEEECCCCCCCCH--------H-----H---HHHHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 89999999886542 2468999999999853221 1 1 234577889999999999999999999
Q ss_pred CCCchhh
Q 009708 467 SIDPEEN 473 (528)
Q Consensus 467 s~~~~En 473 (528)
|.+-...
T Consensus 240 s~~i~~~ 246 (286)
T PF10672_consen 240 SHHISPD 246 (286)
T ss_dssp -TTS-HH
T ss_pred CcccCHH
Confidence 9776543
No 25
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.64 E-value=2.3e-15 Score=146.64 Aligned_cols=153 Identities=20% Similarity=0.285 Sum_probs=118.0
Q ss_pred hHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc
Q 009708 323 SAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN 402 (528)
Q Consensus 323 ~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~ 402 (528)
.+.+++.+..+....+|||+|||+|..++.+|++.. ..+|++||+++.+.+.|++|++.+++..+|+++++|+.++.+.
T Consensus 32 DaiLL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~-~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~ 110 (248)
T COG4123 32 DAILLAAFAPVPKKGRILDLGAGNGALGLLLAQRTE-KAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKA 110 (248)
T ss_pred HHHHHHhhcccccCCeEEEecCCcCHHHHHHhccCC-CCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhc
Confidence 367888888887788999999999999999999855 3899999999999999999999999999999999999998765
Q ss_pred C-CCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchhhHHHHHHHH
Q 009708 403 S-TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFL 481 (528)
Q Consensus 403 ~-~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~Ene~~v~~~l 481 (528)
. ..+||+|+||||+.-.|.- ++++-... ....+....-.++++.|.++|||||++.+ +++.|.-.-+...+
T Consensus 111 ~~~~~fD~Ii~NPPyf~~~~~-~~~~~~~~---~Ar~e~~~~le~~i~~a~~~lk~~G~l~~----V~r~erl~ei~~~l 182 (248)
T COG4123 111 LVFASFDLIICNPPYFKQGSR-LNENPLRA---IARHEITLDLEDLIRAAAKLLKPGGRLAF----VHRPERLAEIIELL 182 (248)
T ss_pred ccccccCEEEeCCCCCCCccc-cCcChhhh---hhhhhhcCCHHHHHHHHHHHccCCCEEEE----EecHHHHHHHHHHH
Confidence 4 3469999999999877764 22211100 01111122235679999999999999975 46666654555666
Q ss_pred hhC
Q 009708 482 LRH 484 (528)
Q Consensus 482 ~~~ 484 (528)
.++
T Consensus 183 ~~~ 185 (248)
T COG4123 183 KSY 185 (248)
T ss_pred Hhc
Confidence 653
No 26
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.62 E-value=1.3e-14 Score=146.55 Aligned_cols=129 Identities=22% Similarity=0.273 Sum_probs=98.9
Q ss_pred CCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEE
Q 009708 333 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 412 (528)
Q Consensus 333 ~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~ 412 (528)
..++.+|||+|||+|..++.++... +..+|+|+|+|+.+++.+++|++.+|+.++++++++|+..... ..+||+|++
T Consensus 119 ~~~~~~vLDlG~GsG~i~~~la~~~-~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~--~~~fD~Iv~ 195 (284)
T TIGR03533 119 PEPVKRILDLCTGSGCIAIACAYAF-PEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALP--GRKYDLIVS 195 (284)
T ss_pred cCCCCEEEEEeCchhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccC--CCCccEEEE
Confidence 3445799999999999999999874 3579999999999999999999999997779999999865432 247999999
Q ss_pred cCCCCCCccccCCc-hhhccCCHHHH----HHHHHHHHHHHHHHhccCcCCCEEEEEcC
Q 009708 413 DAPCSGLGVLSKRA-DLRWNRRLEDM----EELKILQDELLDAASLLVKPGGVLVYSTC 466 (528)
Q Consensus 413 D~Pcsg~G~~~~~p-d~~~~~~~~~~----~~l~~~q~~lL~~a~~~LkpGG~LvysTc 466 (528)
|||+...+.+...+ +.+ ..+... ......++.++..+.++|+|||++++-+.
T Consensus 196 NPPy~~~~~~~~l~~~~~--~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g 252 (284)
T TIGR03533 196 NPPYVDAEDMADLPAEYH--HEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVG 252 (284)
T ss_pred CCCCCCccchhhCCHhhh--cCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 99997665543222 221 111110 12346678899999999999999986543
No 27
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.62 E-value=9.4e-15 Score=135.49 Aligned_cols=139 Identities=24% Similarity=0.318 Sum_probs=112.7
Q ss_pred cchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccc
Q 009708 321 DESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 400 (528)
Q Consensus 321 d~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~ 400 (528)
.+-..+....|.+++|++++|+|||+|+.++.++ ++.+.++|+|+|.++++++..++|++++|++| ++++.+|+.+..
T Consensus 20 ~EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a-~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n-~~vv~g~Ap~~L 97 (187)
T COG2242 20 EEIRALTLSKLRPRPGDRLWDIGAGTGSITIEWA-LAGPSGRVIAIERDEEALELIERNAARFGVDN-LEVVEGDAPEAL 97 (187)
T ss_pred HHHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHH-HhCCCceEEEEecCHHHHHHHHHHHHHhCCCc-EEEEeccchHhh
Confidence 4455667778899999999999999999999999 56889999999999999999999999999887 999999998877
Q ss_pred ccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchhhHHHHHHH
Q 009708 401 DNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAF 480 (528)
Q Consensus 401 ~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~Ene~~v~~~ 480 (528)
...+ +||.||+ .|.|. ...+|+.++..|||||+||...- ..|++......
T Consensus 98 ~~~~-~~daiFI----GGg~~----------------------i~~ile~~~~~l~~ggrlV~nai---tlE~~~~a~~~ 147 (187)
T COG2242 98 PDLP-SPDAIFI----GGGGN----------------------IEEILEAAWERLKPGGRLVANAI---TLETLAKALEA 147 (187)
T ss_pred cCCC-CCCEEEE----CCCCC----------------------HHHHHHHHHHHcCcCCeEEEEee---cHHHHHHHHHH
Confidence 6543 7999998 33332 23469999999999999995443 34666667777
Q ss_pred HhhCCCceEec
Q 009708 481 LLRHPEFSIDP 491 (528)
Q Consensus 481 l~~~~~~~~~~ 491 (528)
++++..+++..
T Consensus 148 ~~~~g~~ei~~ 158 (187)
T COG2242 148 LEQLGGREIVQ 158 (187)
T ss_pred HHHcCCceEEE
Confidence 77765434443
No 28
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.62 E-value=2.4e-15 Score=130.02 Aligned_cols=112 Identities=25% Similarity=0.328 Sum_probs=88.6
Q ss_pred CCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEcC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDA 414 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~ 414 (528)
||.+|||+|||+|..+..+++.. +..+|+|+|+|+.+++.+++++...+...+++++++|+ ........+||+|+++.
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~~~~~D~v~~~~ 78 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLF-PGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDPDFLEPFDLVICSG 78 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGTTTSSCEEEEEECS
T ss_pred CCCEEEEEcCcCCHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCcccCCCCCEEEECC
Confidence 57899999999999999999853 46899999999999999999998888877899999999 33333346799999865
Q ss_pred CCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcC
Q 009708 415 PCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTC 466 (528)
Q Consensus 415 Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTc 466 (528)
.+.... ... ..+.++++.+.+.|+|||+|++.+|
T Consensus 79 -~~~~~~----------------~~~-~~~~~~l~~~~~~L~pgG~lvi~~~ 112 (112)
T PF12847_consen 79 -FTLHFL----------------LPL-DERRRVLERIRRLLKPGGRLVINTC 112 (112)
T ss_dssp -GSGGGC----------------CHH-HHHHHHHHHHHHHEEEEEEEEEEE-
T ss_pred -Cccccc----------------cch-hHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 211001 011 3456679999999999999999988
No 29
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.62 E-value=4.1e-15 Score=167.65 Aligned_cols=147 Identities=20% Similarity=0.280 Sum_probs=118.5
Q ss_pred cccccceeEeecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCC-cc
Q 009708 310 GLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVN-SV 388 (528)
Q Consensus 310 ~~~~~G~~~~Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~-~~ 388 (528)
...+.|.|..|.....++..+. .|.+|||+|||+|+++++++.. +..+|+++|+|+.+++.+++|++.+|++ ++
T Consensus 516 ~~~~tG~flDqr~~R~~~~~~~---~g~rVLDlf~gtG~~sl~aa~~--Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~ 590 (702)
T PRK11783 516 DYLDTGLFLDHRPTRRMIGQMA---KGKDFLNLFAYTGTASVHAALG--GAKSTTTVDMSNTYLEWAERNFALNGLSGRQ 590 (702)
T ss_pred CCCcceECHHHHHHHHHHHHhc---CCCeEEEcCCCCCHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHhCCCccc
Confidence 4467899999988877777664 3789999999999999999974 4458999999999999999999999997 56
Q ss_pred EEEEcCccccccccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCC
Q 009708 389 IRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSI 468 (528)
Q Consensus 389 i~~~~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~ 468 (528)
++++++|+.++.....++||+|++|||+.+.+- ...++......+.+++..+.++|+|||+|++++|+-
T Consensus 591 v~~i~~D~~~~l~~~~~~fDlIilDPP~f~~~~-----------~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~ 659 (702)
T PRK11783 591 HRLIQADCLAWLKEAREQFDLIFIDPPTFSNSK-----------RMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKR 659 (702)
T ss_pred eEEEEccHHHHHHHcCCCcCEEEECCCCCCCCC-----------ccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence 999999998865433468999999999965321 111233445567888999999999999999999986
Q ss_pred Cchh
Q 009708 469 DPEE 472 (528)
Q Consensus 469 ~~~E 472 (528)
+-..
T Consensus 660 ~~~~ 663 (702)
T PRK11783 660 GFKM 663 (702)
T ss_pred cCCh
Confidence 6554
No 30
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.60 E-value=2.2e-15 Score=140.98 Aligned_cols=126 Identities=22% Similarity=0.322 Sum_probs=100.3
Q ss_pred cchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccc
Q 009708 321 DESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 400 (528)
Q Consensus 321 d~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~ 400 (528)
|.++.++++.+...++.+|||+|||+|..++.+++. .+..+|+++|+++.+++.+++|++.+++++ +++++.|..+..
T Consensus 17 d~~t~lL~~~l~~~~~~~vLDlG~G~G~i~~~la~~-~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~-v~~~~~d~~~~~ 94 (170)
T PF05175_consen 17 DAGTRLLLDNLPKHKGGRVLDLGCGSGVISLALAKR-GPDAKVTAVDINPDALELAKRNAERNGLEN-VEVVQSDLFEAL 94 (170)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEETSTTSHHHHHHHHT-STCEEEEEEESBHHHHHHHHHHHHHTTCTT-EEEEESSTTTTC
T ss_pred CHHHHHHHHHHhhccCCeEEEecCChHHHHHHHHHh-CCCCEEEEEcCCHHHHHHHHHHHHhcCccc-cccccccccccc
Confidence 667888888777667889999999999999999987 445689999999999999999999999998 999999997755
Q ss_pred ccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 401 DNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 401 ~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
. ..+||.|++|||....+ ........++++.+.++|||||.|++..-+
T Consensus 95 ~--~~~fD~Iv~NPP~~~~~-----------------~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~ 142 (170)
T PF05175_consen 95 P--DGKFDLIVSNPPFHAGG-----------------DDGLDLLRDFIEQARRYLKPGGRLFLVINS 142 (170)
T ss_dssp C--TTCEEEEEE---SBTTS-----------------HCHHHHHHHHHHHHHHHEEEEEEEEEEEET
T ss_pred c--ccceeEEEEccchhccc-----------------ccchhhHHHHHHHHHHhccCCCEEEEEeec
Confidence 4 47899999999963211 112334577899999999999998754433
No 31
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.60 E-value=3.6e-15 Score=129.96 Aligned_cols=115 Identities=23% Similarity=0.312 Sum_probs=91.8
Q ss_pred CCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccc-cCCCCCCEEEEcC
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-NSTVKCDKVLLDA 414 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~-~~~~~fD~Vl~D~ 414 (528)
|.+|||+|||+|..++.+++.. ..+++++|+++..++.++.|+..+++..+++++++|+..... ....+||+|++||
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~np 78 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNP 78 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--
T ss_pred CCEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECC
Confidence 5689999999999999999873 579999999999999999999999997779999999988763 2357899999999
Q ss_pred CCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcC
Q 009708 415 PCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTC 466 (528)
Q Consensus 415 Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTc 466 (528)
|+........ .....+..+++.+.++|||||.+++.+|
T Consensus 79 P~~~~~~~~~--------------~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 79 PYGPRSGDKA--------------ALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp STTSBTT------------------GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCccccccch--------------hhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 9964321110 1111556789999999999999999876
No 32
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.57 E-value=5.3e-14 Score=141.40 Aligned_cols=230 Identities=17% Similarity=0.141 Sum_probs=140.9
Q ss_pred HHHHHHHHHHhCHHHHHHHHHhcCCCCCeEEEEcCCCCCCHHHH---HHHHhh--cCCCCCc--eecccCCceEEeeCCc
Q 009708 231 VWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADL---VMQLNL--LKLQVPH--ELSLHLDEFIRVKTGL 303 (528)
Q Consensus 231 ~w~~~~~~~~~g~~~~~~~~~~~~~~~~~~~rvn~~k~~~~~~~---~~~L~~--~~~~~~~--~~~~~~~~~~~~~~~~ 303 (528)
.|..+.|.+ +..+++.++......++..++.|..+..+.++. .+.+.. .|.+..+ +..++....+.+
T Consensus 9 ~~~~~~l~~--~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~g~~~f~~~~~~~---- 82 (275)
T PRK09328 9 REATARLAS--PRLDAELLLAHVLGLSRTDLLLNPEEELTPEELERFRALVARRAAGEPLQYILGEAEFWGLDFKV---- 82 (275)
T ss_pred HHHHHHHhC--cHHHHHHHHHHHHCcCHHHHhhcccCCCCHHHHHHHHHHHHHHHcCCCHHHHceeceEcCcEEEE----
Confidence 566666665 777888888888777788888887654455433 222222 1111110 001111111111
Q ss_pred cchhcccccccceeEeecchHHHHHH---hcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHH
Q 009708 304 QNVIQAGLLKEGLCAVQDESAGLVVA---VVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETA 380 (528)
Q Consensus 304 ~~~~~~~~~~~G~~~~Qd~~s~l~~~---~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~ 380 (528)
..+.+.....+..++.. .+...++.+|||+|||+|..++.++... +..+++++|+++.+++.+++|+
T Consensus 83 ---------~~~~lipr~~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~-~~~~v~~iDis~~~l~~a~~n~ 152 (275)
T PRK09328 83 ---------SPGVLIPRPETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKER-PDAEVTAVDISPEALAVARRNA 152 (275)
T ss_pred ---------CCCceeCCCCcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHH
Confidence 12222222222222222 2334567899999999999999999875 3579999999999999999999
Q ss_pred HHcCCCccEEEEcCccccccccCCCCCCEEEEcCCCCCCcccc-CCchhhccCCHHHH---HHHHHHHHHHHHHHhccCc
Q 009708 381 KLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLS-KRADLRWNRRLEDM---EELKILQDELLDAASLLVK 456 (528)
Q Consensus 381 ~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~~-~~pd~~~~~~~~~~---~~l~~~q~~lL~~a~~~Lk 456 (528)
+ .+...++.++++|+..... .++||+|++||||...+.+. ..+++++......+ ......+..+++.+.++|+
T Consensus 153 ~-~~~~~~i~~~~~d~~~~~~--~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk 229 (275)
T PRK09328 153 K-HGLGARVEFLQGDWFEPLP--GGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLK 229 (275)
T ss_pred H-hCCCCcEEEEEccccCcCC--CCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcc
Confidence 8 3333458999999865332 36899999999997766543 22333321111111 1244667889999999999
Q ss_pred CCCEEEEEcCCCCchhhHHHHHHHHhh
Q 009708 457 PGGVLVYSTCSIDPEENEERVEAFLLR 483 (528)
Q Consensus 457 pGG~LvysTcs~~~~Ene~~v~~~l~~ 483 (528)
|||++++... . .. .+.+..++.+
T Consensus 230 ~gG~l~~e~g-~--~~-~~~~~~~l~~ 252 (275)
T PRK09328 230 PGGWLLLEIG-Y--DQ-GEAVRALLAA 252 (275)
T ss_pred cCCEEEEEEC-c--hH-HHHHHHHHHh
Confidence 9999997532 2 22 2235556654
No 33
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.56 E-value=7.4e-14 Score=138.66 Aligned_cols=140 Identities=16% Similarity=0.141 Sum_probs=104.3
Q ss_pred CCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc-CCCCCCEEEEcC
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVKCDKVLLDA 414 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~-~~~~fD~Vl~D~ 414 (528)
+.+|||+|||+|.+++.++...+ ..+|+++|+|+.+++.+++|++.++. +++++|+.+.... ..++||+|++||
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~-~~~v~~vDis~~al~~A~~N~~~~~~----~~~~~D~~~~l~~~~~~~fDlVv~NP 161 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALD-GIELHAADIDPAAVRCARRNLADAGG----TVHEGDLYDALPTALRGRVDILAANA 161 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCC----EEEEeechhhcchhcCCCEeEEEECC
Confidence 45899999999999999998743 46899999999999999999998763 5788898764321 135799999999
Q ss_pred CCCCCccccC-CchhhccCCHHHH---HHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchhhHHHHHHHHhhC
Q 009708 415 PCSGLGVLSK-RADLRWNRRLEDM---EELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRH 484 (528)
Q Consensus 415 Pcsg~G~~~~-~pd~~~~~~~~~~---~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~Ene~~v~~~l~~~ 484 (528)
||...+.+.+ .|+.++......+ ......+++++..+.++|||||.+++.+.. ...+ .+...+.++
T Consensus 162 Py~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~---~~~~-~v~~~l~~~ 231 (251)
T TIGR03704 162 PYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSE---RQAP-LAVEAFARA 231 (251)
T ss_pred CCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc---chHH-HHHHHHHHC
Confidence 9988776554 4555443222222 245677899999999999999999987653 2223 345556553
No 34
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.55 E-value=4.9e-14 Score=145.62 Aligned_cols=128 Identities=16% Similarity=0.151 Sum_probs=103.1
Q ss_pred HHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccC
Q 009708 324 AGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS 403 (528)
Q Consensus 324 s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~ 403 (528)
+..++.++.+++|+.|||+|||+|++++.++.. +.+|+|+|+++.++..++.|++.+|+.+ +.++++|+.+++..
T Consensus 171 a~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~---~~~v~g~Di~~~~~~~a~~nl~~~g~~~-i~~~~~D~~~l~~~- 245 (329)
T TIGR01177 171 ARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLM---GAKVIGCDIDWKMVAGARINLEHYGIED-FFVKRGDATKLPLS- 245 (329)
T ss_pred HHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHh---CCeEEEEcCCHHHHHHHHHHHHHhCCCC-CeEEecchhcCCcc-
Confidence 445556667889999999999999999887653 5789999999999999999999999987 88999999986542
Q ss_pred CCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCC
Q 009708 404 TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSID 469 (528)
Q Consensus 404 ~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~ 469 (528)
.++||.|++||||....... ......++.++|..+.+.|||||++++.+++-.
T Consensus 246 ~~~~D~Iv~dPPyg~~~~~~-------------~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~ 298 (329)
T TIGR01177 246 SESVDAIATDPPYGRSTTAA-------------GDGLESLYERSLEEFHEVLKSEGWIVYAVPTRI 298 (329)
T ss_pred cCCCCEEEECCCCcCccccc-------------CCchHHHHHHHHHHHHHHccCCcEEEEEEcCCC
Confidence 46899999999995322111 012345678899999999999999999887643
No 35
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.54 E-value=1.2e-13 Score=132.35 Aligned_cols=134 Identities=19% Similarity=0.262 Sum_probs=104.0
Q ss_pred hHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc
Q 009708 323 SAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN 402 (528)
Q Consensus 323 ~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~ 402 (528)
...+....+.+.++++|||+|||+|..++.++..+++.++|+++|+++.+++.+++|++.+|+.++++++++|+.+....
T Consensus 28 ~r~~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~ 107 (198)
T PRK00377 28 IRALALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFT 107 (198)
T ss_pred HHHHHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhh
Confidence 34444556788899999999999999999999877667899999999999999999999999655589999999775443
Q ss_pred CCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchhhHHHHHHHHh
Q 009708 403 STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLL 482 (528)
Q Consensus 403 ~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~Ene~~v~~~l~ 482 (528)
....||.|+++... .. ...+++.+.++|||||++++.+|++ ++...+...++
T Consensus 108 ~~~~~D~V~~~~~~------------------~~-------~~~~l~~~~~~LkpgG~lv~~~~~~---~~~~~~~~~l~ 159 (198)
T PRK00377 108 INEKFDRIFIGGGS------------------EK-------LKEIISASWEIIKKGGRIVIDAILL---ETVNNALSALE 159 (198)
T ss_pred cCCCCCEEEECCCc------------------cc-------HHHHHHHHHHHcCCCcEEEEEeecH---HHHHHHHHHHH
Confidence 34679999985321 11 1346889999999999999888754 33445556665
Q ss_pred hC
Q 009708 483 RH 484 (528)
Q Consensus 483 ~~ 484 (528)
++
T Consensus 160 ~~ 161 (198)
T PRK00377 160 NI 161 (198)
T ss_pred Hc
Confidence 54
No 36
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.54 E-value=1.5e-13 Score=129.51 Aligned_cols=158 Identities=21% Similarity=0.208 Sum_probs=111.1
Q ss_pred cchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccc
Q 009708 321 DESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 400 (528)
Q Consensus 321 d~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~ 400 (528)
...+.++...+...++.+|||+|||+|..+..++.. ..+|+++|+++.+++.+++|++.+++. ++++++|.....
T Consensus 5 ~~d~~~l~~~l~~~~~~~vLdlG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~--~~~~~~d~~~~~ 79 (179)
T TIGR00537 5 AEDSLLLEANLRELKPDDVLEIGAGTGLVAIRLKGK---GKCILTTDINPFAVKELRENAKLNNVG--LDVVMTDLFKGV 79 (179)
T ss_pred CccHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHhc---CCEEEEEECCHHHHHHHHHHHHHcCCc--eEEEEccccccc
Confidence 344566666666667789999999999999999875 238999999999999999999988863 788999987643
Q ss_pred ccCCCCCCEEEEcCCCCCCcc-ccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchhhHHHHHH
Q 009708 401 DNSTVKCDKVLLDAPCSGLGV-LSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEA 479 (528)
Q Consensus 401 ~~~~~~fD~Vl~D~Pcsg~G~-~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~Ene~~v~~ 479 (528)
..+||.|+++||+..... ...++...+... ........+.++++.+.++|||||++++.+++... ...+..
T Consensus 80 ---~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~---~~~~~~ 151 (179)
T TIGR00537 80 ---RGKFDVILFNPPYLPLEDDLRRGDWLDVAID--GGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNG---EPDTFD 151 (179)
T ss_pred ---CCcccEEEECCCCCCCcchhcccchhhhhhh--cCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCC---hHHHHH
Confidence 258999999999943221 111111111000 00011244678899999999999999988876543 344566
Q ss_pred HHhhCCCceEecC
Q 009708 480 FLLRHPEFSIDPA 492 (528)
Q Consensus 480 ~l~~~~~~~~~~~ 492 (528)
++++. +|....+
T Consensus 152 ~l~~~-gf~~~~~ 163 (179)
T TIGR00537 152 KLDER-GFRYEIV 163 (179)
T ss_pred HHHhC-CCeEEEE
Confidence 77665 4655443
No 37
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.53 E-value=2.4e-13 Score=131.43 Aligned_cols=127 Identities=27% Similarity=0.430 Sum_probs=112.0
Q ss_pred ccccceeEeecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEE
Q 009708 311 LLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIR 390 (528)
Q Consensus 311 ~~~~G~~~~Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~ 390 (528)
.|+.+--++..+.+.+++..+++.||++|||.|+|+|..|..||..+++.|+|+.+|+.++.++.|++|++..|+.++++
T Consensus 70 ~~~R~tQiIyPKD~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~ 149 (256)
T COG2519 70 SMKRRTQIIYPKDAGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVT 149 (256)
T ss_pred hCcCCCceecCCCHHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceE
Confidence 37777777778888889999999999999999999999999999988889999999999999999999999999998899
Q ss_pred EEcCccccccccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEE-EEcC
Q 009708 391 TIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLV-YSTC 466 (528)
Q Consensus 391 ~~~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lv-ysTc 466 (528)
+..+|..+.... ..||+|++|.|- .| +.++++...|||||.++ |+.|
T Consensus 150 ~~~~Dv~~~~~~--~~vDav~LDmp~------------PW---------------~~le~~~~~Lkpgg~~~~y~P~ 197 (256)
T COG2519 150 LKLGDVREGIDE--EDVDAVFLDLPD------------PW---------------NVLEHVSDALKPGGVVVVYSPT 197 (256)
T ss_pred EEeccccccccc--cccCEEEEcCCC------------hH---------------HHHHHHHHHhCCCcEEEEEcCC
Confidence 999999887654 489999999886 24 35899999999999876 4444
No 38
>PRK14967 putative methyltransferase; Provisional
Probab=99.53 E-value=2.4e-13 Score=132.71 Aligned_cols=144 Identities=24% Similarity=0.404 Sum_probs=103.9
Q ss_pred cceeEeecchHHHHHHhc---CCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEE
Q 009708 314 EGLCAVQDESAGLVVAVV---DPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIR 390 (528)
Q Consensus 314 ~G~~~~Qd~~s~l~~~~l---~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~ 390 (528)
.|.|..|..+ .++...+ .+.++++|||+|||+|..+..++.. +.++|+++|+++.+++.+++|++.++.. ++
T Consensus 13 ~g~~~p~~ds-~~l~~~l~~~~~~~~~~vLDlGcG~G~~~~~la~~--~~~~v~~vD~s~~~l~~a~~n~~~~~~~--~~ 87 (223)
T PRK14967 13 PGVYRPQEDT-QLLADALAAEGLGPGRRVLDLCTGSGALAVAAAAA--GAGSVTAVDISRRAVRSARLNALLAGVD--VD 87 (223)
T ss_pred CCCcCCCCcH-HHHHHHHHhcccCCCCeEEEecCCHHHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHHhCCe--eE
Confidence 3445555544 3444333 4677889999999999999998875 3459999999999999999999998874 78
Q ss_pred EEcCccccccccCCCCCCEEEEcCCCCC---CccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 391 TIHADLRTFADNSTVKCDKVLLDAPCSG---LGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 391 ~~~~D~~~~~~~~~~~fD~Vl~D~Pcsg---~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
++++|+..... ..+||+|++|||+.. .+...+.++..|....+. ...+..+++.+.++||+||++++...+
T Consensus 88 ~~~~d~~~~~~--~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~a~~~Lk~gG~l~~~~~~ 161 (223)
T PRK14967 88 VRRGDWARAVE--FRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDG----RAVLDRLCDAAPALLAPGGSLLLVQSE 161 (223)
T ss_pred EEECchhhhcc--CCCeeEEEECCCCCCCCcccccccChhHhhhCCCcH----HHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 88999876432 368999999998742 233334444445422222 234567899999999999999975444
Q ss_pred C
Q 009708 468 I 468 (528)
Q Consensus 468 ~ 468 (528)
.
T Consensus 162 ~ 162 (223)
T PRK14967 162 L 162 (223)
T ss_pred c
Confidence 4
No 39
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.51 E-value=2.1e-13 Score=132.86 Aligned_cols=117 Identities=23% Similarity=0.422 Sum_probs=95.4
Q ss_pred HHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCC
Q 009708 326 LVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTV 405 (528)
Q Consensus 326 l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~ 405 (528)
.++..+...+|.+|||+|||||-.++.+++..+ .++|+++|+|+.||+.+++.+...|..+ ++++++|+.+++. ...
T Consensus 42 ~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~~-i~fv~~dAe~LPf-~D~ 118 (238)
T COG2226 42 ALISLLGIKPGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQN-VEFVVGDAENLPF-PDN 118 (238)
T ss_pred HHHHhhCCCCCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCccc-eEEEEechhhCCC-CCC
Confidence 345555666899999999999999999999866 7999999999999999999999999887 9999999999884 468
Q ss_pred CCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 406 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 406 ~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
+||+|.+ +.|+ +.-+ ++ .+.|++++++|||||+++...-+
T Consensus 119 sFD~vt~-----~fgl-rnv~---------d~-------~~aL~E~~RVlKpgG~~~vle~~ 158 (238)
T COG2226 119 SFDAVTI-----SFGL-RNVT---------DI-------DKALKEMYRVLKPGGRLLVLEFS 158 (238)
T ss_pred ccCEEEe-----eehh-hcCC---------CH-------HHHHHHHHHhhcCCeEEEEEEcC
Confidence 9999986 2333 2211 22 34599999999999988854433
No 40
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.50 E-value=2.3e-13 Score=132.19 Aligned_cols=120 Identities=16% Similarity=0.228 Sum_probs=95.8
Q ss_pred ceeEeecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcC
Q 009708 315 GLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHA 394 (528)
Q Consensus 315 G~~~~Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~ 394 (528)
|....+......+...+.+++|++|||+|||+|..+..++...+..++|+++|+++.+++.+++|++++|+++ ++++++
T Consensus 57 ~~~~~~p~~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~-v~~~~~ 135 (215)
T TIGR00080 57 GQTISAPHMVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDN-VIVIVG 135 (215)
T ss_pred CCEechHHHHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCC-eEEEEC
Confidence 3333333334566677888999999999999999999999986656889999999999999999999999975 899999
Q ss_pred ccccccccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 395 DLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 395 D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
|+...... ..+||+|++++++.. +...+.+.|+|||+|++.
T Consensus 136 d~~~~~~~-~~~fD~Ii~~~~~~~----------------------------~~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 136 DGTQGWEP-LAPYDRIYVTAAGPK----------------------------IPEALIDQLKEGGILVMP 176 (215)
T ss_pred CcccCCcc-cCCCCEEEEcCCccc----------------------------ccHHHHHhcCcCcEEEEE
Confidence 99765432 357999999877621 234456789999999964
No 41
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.49 E-value=3.2e-13 Score=137.83 Aligned_cols=125 Identities=21% Similarity=0.262 Sum_probs=95.5
Q ss_pred CeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEcCCC
Q 009708 337 QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPC 416 (528)
Q Consensus 337 ~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~Pc 416 (528)
.+|||+|||+|..++.++... +..+|+|+|+|+.+++.+++|++.+|+.++++++++|+....+ ..+||+|++|||+
T Consensus 135 ~~VLDlG~GsG~iai~la~~~-p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~--~~~fDlIvsNPPy 211 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAF-PDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALP--GRRYDLIVSNPPY 211 (307)
T ss_pred CEEEEEechhhHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCC--CCCccEEEECCCC
Confidence 689999999999999999874 4579999999999999999999999987779999999865432 2579999999999
Q ss_pred CCCccccCC-chhhccCCH--HHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 417 SGLGVLSKR-ADLRWNRRL--EDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 417 sg~G~~~~~-pd~~~~~~~--~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
.+.+.+... ++.++.... ..-......++.++..+.++|+|||.+++.
T Consensus 212 i~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E 262 (307)
T PRK11805 212 VDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVE 262 (307)
T ss_pred CCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 876554321 122110000 000123356788999999999999999864
No 42
>PRK04266 fibrillarin; Provisional
Probab=99.48 E-value=2.2e-12 Score=125.96 Aligned_cols=113 Identities=24% Similarity=0.356 Sum_probs=86.1
Q ss_pred HHHHHHh--cCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccc-
Q 009708 324 AGLVVAV--VDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA- 400 (528)
Q Consensus 324 s~l~~~~--l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~- 400 (528)
+.++..+ +++.+|++|||+|||+|.++..++..++ .++|+|+|+++.+++.+.++++.. .| +.++.+|+....
T Consensus 59 ~~ll~~~~~l~i~~g~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~~--~n-v~~i~~D~~~~~~ 134 (226)
T PRK04266 59 AAILKGLKNFPIKKGSKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEER--KN-IIPILADARKPER 134 (226)
T ss_pred HHHHhhHhhCCCCCCCEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhhc--CC-cEEEECCCCCcch
Confidence 3444433 7888999999999999999999999875 689999999999999888887653 44 788899987521
Q ss_pred -ccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 401 -DNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 401 -~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
....++||.|++|.+- |+ . ...+|.++.++|||||.|+++
T Consensus 135 ~~~l~~~~D~i~~d~~~---------p~--------~-------~~~~L~~~~r~LKpGG~lvI~ 175 (226)
T PRK04266 135 YAHVVEKVDVIYQDVAQ---------PN--------Q-------AEIAIDNAEFFLKDGGYLLLA 175 (226)
T ss_pred hhhccccCCEEEECCCC---------hh--------H-------HHHHHHHHHHhcCCCcEEEEE
Confidence 1113569999987442 10 0 123588999999999999983
No 43
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.48 E-value=3.6e-13 Score=138.31 Aligned_cols=88 Identities=23% Similarity=0.249 Sum_probs=73.7
Q ss_pred HhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCC
Q 009708 329 AVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCD 408 (528)
Q Consensus 329 ~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD 408 (528)
.++...++.+|||+|||+|..++.++.. ..+|+|+|+++.+++.+++|++.+|+++ ++++++|+.++.......||
T Consensus 167 ~~l~~~~~~~VLDl~cG~G~~sl~la~~---~~~V~gvD~s~~av~~A~~n~~~~~l~~-v~~~~~D~~~~~~~~~~~~D 242 (315)
T PRK03522 167 DWVRELPPRSMWDLFCGVGGFGLHCATP---GMQLTGIEISAEAIACAKQSAAELGLTN-VQFQALDSTQFATAQGEVPD 242 (315)
T ss_pred HHHHhcCCCEEEEccCCCCHHHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEEcCHHHHHHhcCCCCe
Confidence 3444345789999999999999999984 4699999999999999999999999964 99999999876543335799
Q ss_pred EEEEcCCCCCCc
Q 009708 409 KVLLDAPCSGLG 420 (528)
Q Consensus 409 ~Vl~D~Pcsg~G 420 (528)
.|++|||+.|.+
T Consensus 243 ~Vv~dPPr~G~~ 254 (315)
T PRK03522 243 LVLVNPPRRGIG 254 (315)
T ss_pred EEEECCCCCCcc
Confidence 999999997633
No 44
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.47 E-value=6.5e-13 Score=128.06 Aligned_cols=112 Identities=21% Similarity=0.347 Sum_probs=91.7
Q ss_pred HHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccC
Q 009708 324 AGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS 403 (528)
Q Consensus 324 s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~ 403 (528)
...+.+.+.+.++++|||+|||+|..+..+++.++..++|+++|+++.+++.+++|++.+++.++++++++|+......
T Consensus 61 ~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~- 139 (205)
T PRK13944 61 VAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEK- 139 (205)
T ss_pred HHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCcc-
Confidence 4455667788899999999999999999999987666899999999999999999999999877789999999765432
Q ss_pred CCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 404 TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 404 ~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
..+||.|+++.... .+...+.+.|+|||+|++.
T Consensus 140 ~~~fD~Ii~~~~~~----------------------------~~~~~l~~~L~~gG~lvi~ 172 (205)
T PRK13944 140 HAPFDAIIVTAAAS----------------------------TIPSALVRQLKDGGVLVIP 172 (205)
T ss_pred CCCccEEEEccCcc----------------------------hhhHHHHHhcCcCcEEEEE
Confidence 35899999976541 0123456789999999864
No 45
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.47 E-value=9.7e-14 Score=136.13 Aligned_cols=118 Identities=23% Similarity=0.368 Sum_probs=82.6
Q ss_pred HHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCC
Q 009708 326 LVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTV 405 (528)
Q Consensus 326 l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~ 405 (528)
.++..+.+.+|.+|||+|||||-.+..+++.+++.++|+++|+|+.+++.++++++..+..+ |+++++|+.+++.. .+
T Consensus 38 ~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~-i~~v~~da~~lp~~-d~ 115 (233)
T PF01209_consen 38 KLIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQN-IEFVQGDAEDLPFP-DN 115 (233)
T ss_dssp HHHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--S-EEEEE-BTTB--S--TT
T ss_pred HHHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCC-eeEEEcCHHHhcCC-CC
Confidence 44556678889999999999999999999887778899999999999999999999998874 99999999998743 47
Q ss_pred CCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 406 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 406 ~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
+||.|++ +.|+ +.-|| +.+.|+++.++|||||++++...+
T Consensus 116 sfD~v~~-----~fgl-rn~~d----------------~~~~l~E~~RVLkPGG~l~ile~~ 155 (233)
T PF01209_consen 116 SFDAVTC-----SFGL-RNFPD----------------RERALREMYRVLKPGGRLVILEFS 155 (233)
T ss_dssp -EEEEEE-----ES-G-GG-SS----------------HHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred ceeEEEH-----HhhH-HhhCC----------------HHHHHHHHHHHcCCCeEEEEeecc
Confidence 8999985 3333 22221 234599999999999999976544
No 46
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.46 E-value=1.3e-12 Score=132.27 Aligned_cols=128 Identities=20% Similarity=0.239 Sum_probs=96.3
Q ss_pred CeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEcCCC
Q 009708 337 QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPC 416 (528)
Q Consensus 337 ~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~Pc 416 (528)
.+|||+|||+|..++.++...+ ..+|+|+|+|+.+++.+++|++++++.++++++++|+..... ..+||+|++|||+
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~-~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~--~~~fDlIvsNPPy 192 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFP-NAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLA--GQKIDIIVSNPPY 192 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCc--CCCccEEEECCCC
Confidence 6899999999999999998743 579999999999999999999999997679999999876432 2379999999999
Q ss_pred CCCccccCCchhhccCCHHHH---HHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 417 SGLGVLSKRADLRWNRRLEDM---EELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 417 sg~G~~~~~pd~~~~~~~~~~---~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
.....+...++.........+ ......++.++..+.++|+|||.|++..+.
T Consensus 193 i~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~ 246 (284)
T TIGR00536 193 IDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGN 246 (284)
T ss_pred CCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECc
Confidence 655432222222110000000 123356788999999999999999976553
No 47
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.46 E-value=5.5e-13 Score=122.17 Aligned_cols=111 Identities=20% Similarity=0.300 Sum_probs=90.9
Q ss_pred CCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEc
Q 009708 334 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLD 413 (528)
Q Consensus 334 ~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D 413 (528)
+.+.+|||+|||+|..+..++..+.+.++++++|+|+.+++.++++++..++++ ++++++|+.++.....++||+|+++
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~n-i~~~~~d~~~l~~~~~~~~D~I~~~ 80 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDN-IEFIQGDIEDLPQELEEKFDIIISN 80 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTT-EEEEESBTTCGCGCSSTTEEEEEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccc-cceEEeehhccccccCCCeeEEEEc
Confidence 457899999999999999999666667899999999999999999999999994 9999999999542212689999998
Q ss_pred CCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 414 APCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 414 ~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
.++.. . . ....+++.+.++|++||+++...+.
T Consensus 81 ~~l~~------~---------~-------~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 81 GVLHH------F---------P-------DPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp STGGG------T---------S-------HHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred Cchhh------c---------c-------CHHHHHHHHHHHcCCCcEEEEEECC
Confidence 76611 0 1 1234688999999999999987776
No 48
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.45 E-value=1.7e-12 Score=113.75 Aligned_cols=112 Identities=27% Similarity=0.419 Sum_probs=89.6
Q ss_pred HHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCC
Q 009708 327 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVK 406 (528)
Q Consensus 327 ~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~ 406 (528)
+...+.+.++.+|||+|||+|..+..+++.++ .++|+++|+++.+++.++++++.+++.+ ++++.+|+.........+
T Consensus 11 ~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 88 (124)
T TIGR02469 11 TLSKLRLRPGDVLWDIGAGSGSITIEAARLVP-NGRVYAIERNPEALRLIERNARRFGVSN-IVIVEGDAPEALEDSLPE 88 (124)
T ss_pred HHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCC-CceEEEEcCCHHHHHHHHHHHHHhCCCc-eEEEeccccccChhhcCC
Confidence 44556677788999999999999999998754 4799999999999999999999998875 888888876533323468
Q ss_pred CCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEc
Q 009708 407 CDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465 (528)
Q Consensus 407 fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysT 465 (528)
||.|+++.+- . .+.++++.+.++|||||+++...
T Consensus 89 ~D~v~~~~~~------------------~-------~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 89 PDRVFIGGSG------------------G-------LLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred CCEEEECCcc------------------h-------hHHHHHHHHHHHcCCCCEEEEEe
Confidence 9999985421 0 12367999999999999999653
No 49
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.45 E-value=1.5e-12 Score=124.52 Aligned_cols=125 Identities=20% Similarity=0.268 Sum_probs=99.9
Q ss_pred ceeEeecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcC
Q 009708 315 GLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHA 394 (528)
Q Consensus 315 G~~~~Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~ 394 (528)
|.-..|.+...++...+.+.++++|||+|||+|..++.++.. .+.++|+++|+++.+++.+++|++++++.+ ++++++
T Consensus 20 ~~p~t~~~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~-~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~-v~~~~~ 97 (196)
T PRK07402 20 GIPLTKREVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLL-CPKGRVIAIERDEEVVNLIRRNCDRFGVKN-VEVIEG 97 (196)
T ss_pred CCCCCHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHH-CCCCEEEEEeCCHHHHHHHHHHHHHhCCCC-eEEEEC
Confidence 444667778888888888889999999999999999999875 345899999999999999999999999875 899999
Q ss_pred ccccccccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 395 DLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 395 D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
|+..........+|.|++|... . ...+++.+.++|+|||++++.+++
T Consensus 98 d~~~~~~~~~~~~d~v~~~~~~-------------------~-------~~~~l~~~~~~LkpgG~li~~~~~ 144 (196)
T PRK07402 98 SAPECLAQLAPAPDRVCIEGGR-------------------P-------IKEILQAVWQYLKPGGRLVATASS 144 (196)
T ss_pred chHHHHhhCCCCCCEEEEECCc-------------------C-------HHHHHHHHHHhcCCCeEEEEEeec
Confidence 9865322222357888775311 0 134689999999999999988875
No 50
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.45 E-value=5.4e-13 Score=131.12 Aligned_cols=126 Identities=21% Similarity=0.381 Sum_probs=96.1
Q ss_pred cceeEeecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEc
Q 009708 314 EGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIH 393 (528)
Q Consensus 314 ~G~~~~Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~ 393 (528)
.+--++....+.++...+++.||++||+.|+|+|..|..++..+++.|+|+.+|+.+++++.|++|++.+|+.+++++.+
T Consensus 19 rrtQIiYpkD~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~ 98 (247)
T PF08704_consen 19 RRTQIIYPKDISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHH 98 (247)
T ss_dssp SSS----HHHHHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEE
T ss_pred CCcceeeCchHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEe
Confidence 33334445556677888999999999999999999999999999999999999999999999999999999987899999
Q ss_pred Cccccccc--cCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccC-cCCCEEE-EEcC
Q 009708 394 ADLRTFAD--NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLV-KPGGVLV-YSTC 466 (528)
Q Consensus 394 ~D~~~~~~--~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~L-kpGG~Lv-ysTc 466 (528)
.|+..-.. .....||.|++|.|. .|. .+.++.+.| |+||+|+ |+-|
T Consensus 99 ~Dv~~~g~~~~~~~~~DavfLDlp~------------Pw~---------------~i~~~~~~L~~~gG~i~~fsP~ 148 (247)
T PF08704_consen 99 RDVCEEGFDEELESDFDAVFLDLPD------------PWE---------------AIPHAKRALKKPGGRICCFSPC 148 (247)
T ss_dssp S-GGCG--STT-TTSEEEEEEESSS------------GGG---------------GHHHHHHHE-EEEEEEEEEESS
T ss_pred cceecccccccccCcccEEEEeCCC------------HHH---------------HHHHHHHHHhcCCceEEEECCC
Confidence 99975322 223679999999997 343 488889999 8999875 5544
No 51
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.44 E-value=1.3e-12 Score=126.56 Aligned_cols=119 Identities=16% Similarity=0.200 Sum_probs=94.0
Q ss_pred ceeEeecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcC
Q 009708 315 GLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHA 394 (528)
Q Consensus 315 G~~~~Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~ 394 (528)
|....+......+...+++++|++|||+|||+|..+..+++.++..++|+++|+++.+++.++++++.+|+.+ ++++++
T Consensus 56 g~~~~~p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~-v~~~~g 134 (212)
T PRK13942 56 GQTISAIHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDN-VEVIVG 134 (212)
T ss_pred CCEeCcHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-eEEEEC
Confidence 4444555555667778889999999999999999999999887666899999999999999999999999875 899999
Q ss_pred ccccccccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEE
Q 009708 395 DLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463 (528)
Q Consensus 395 D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvy 463 (528)
|+...... ...||+|+++.... + +.....+.|||||+|+.
T Consensus 135 d~~~~~~~-~~~fD~I~~~~~~~------------------~----------~~~~l~~~LkpgG~lvi 174 (212)
T PRK13942 135 DGTLGYEE-NAPYDRIYVTAAGP------------------D----------IPKPLIEQLKDGGIMVI 174 (212)
T ss_pred CcccCCCc-CCCcCEEEECCCcc------------------c----------chHHHHHhhCCCcEEEE
Confidence 98764322 36799999864320 0 12334567999999985
No 52
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.43 E-value=2.1e-12 Score=134.96 Aligned_cols=163 Identities=20% Similarity=0.163 Sum_probs=108.2
Q ss_pred ceeEeecchHHHHHHhcC-CCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEc
Q 009708 315 GLCAVQDESAGLVVAVVD-PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIH 393 (528)
Q Consensus 315 G~~~~Qd~~s~l~~~~l~-~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~ 393 (528)
|.++....+..++..++. ..++.+|||+|||+|..++.++... +..+|+|+|+|+.+++.+++|++.++. ++++++
T Consensus 230 ~vLIPRpeTE~LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~-p~a~VtAVDiS~~ALe~AreNa~~~g~--rV~fi~ 306 (423)
T PRK14966 230 NVLIPRPETEHLVEAVLARLPENGRVWDLGTGSGAVAVTVALER-PDAFVRASDISPPALETARKNAADLGA--RVEFAH 306 (423)
T ss_pred CccCCCccHHHHHHHhhhccCCCCEEEEEeChhhHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCC--cEEEEE
Confidence 333333334444444433 3456799999999999999998763 467999999999999999999999886 489999
Q ss_pred CccccccccCCCCCCEEEEcCCCCCCccccCCc-hhhccCC--HHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCc
Q 009708 394 ADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRA-DLRWNRR--LEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDP 470 (528)
Q Consensus 394 ~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~p-d~~~~~~--~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~ 470 (528)
+|+.+.......+||+|++|||+...+.....+ ++++... ...-......++++++.+.++|+|||.+++.. ..
T Consensus 307 gDl~e~~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEi---G~ 383 (423)
T PRK14966 307 GSWFDTDMPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEH---GF 383 (423)
T ss_pred cchhccccccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEE---Cc
Confidence 998654211235799999999996654322211 1111000 00112334567889999999999999987432 22
Q ss_pred hhhHHHHHHHHhhC
Q 009708 471 EENEERVEAFLLRH 484 (528)
Q Consensus 471 ~Ene~~v~~~l~~~ 484 (528)
.. .+.+..++.+.
T Consensus 384 ~Q-~e~V~~ll~~~ 396 (423)
T PRK14966 384 DQ-GAAVRGVLAEN 396 (423)
T ss_pred cH-HHHHHHHHHHC
Confidence 22 33455666654
No 53
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.43 E-value=2.3e-12 Score=122.33 Aligned_cols=134 Identities=21% Similarity=0.274 Sum_probs=102.0
Q ss_pred eecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccc
Q 009708 319 VQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT 398 (528)
Q Consensus 319 ~Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~ 398 (528)
.++....++...+.+.++.+|||+|||+|..++.+++.. +.++|+++|+++.+++.+++|++++++.+ ++++++|+..
T Consensus 15 ~~~~~r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~n~~~~~~~~-i~~~~~d~~~ 92 (187)
T PRK08287 15 TKEEVRALALSKLELHRAKHLIDVGAGTGSVSIEAALQF-PSLQVTAIERNPDALRLIKENRQRFGCGN-IDIIPGEAPI 92 (187)
T ss_pred chHHHHHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhCCCC-eEEEecCchh
Confidence 345555666677788889999999999999999999874 45799999999999999999999998875 8999988743
Q ss_pred ccccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchhhHHHHH
Q 009708 399 FADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVE 478 (528)
Q Consensus 399 ~~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~Ene~~v~ 478 (528)
. ...+||+|+++... + .+ ..+++.+.+.|+|||++++.... .++...+.
T Consensus 93 ~---~~~~~D~v~~~~~~---~---------------~~-------~~~l~~~~~~Lk~gG~lv~~~~~---~~~~~~~~ 141 (187)
T PRK08287 93 E---LPGKADAIFIGGSG---G---------------NL-------TAIIDWSLAHLHPGGRLVLTFIL---LENLHSAL 141 (187)
T ss_pred h---cCcCCCEEEECCCc---c---------------CH-------HHHHHHHHHhcCCCeEEEEEEec---HhhHHHHH
Confidence 2 23579999985321 0 11 23588899999999999975432 34455666
Q ss_pred HHHhhCC
Q 009708 479 AFLLRHP 485 (528)
Q Consensus 479 ~~l~~~~ 485 (528)
.+++++.
T Consensus 142 ~~l~~~g 148 (187)
T PRK08287 142 AHLEKCG 148 (187)
T ss_pred HHHHHCC
Confidence 7777653
No 54
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.43 E-value=2.8e-12 Score=126.12 Aligned_cols=120 Identities=22% Similarity=0.194 Sum_probs=98.2
Q ss_pred HHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccC
Q 009708 324 AGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS 403 (528)
Q Consensus 324 s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~ 403 (528)
.+++..++...++.+|||+|||+|.-++.++..+.+.++|+++|+++++++.+++|++++|+.++++++.+|+.+..+..
T Consensus 57 g~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l 136 (234)
T PLN02781 57 GLFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQL 136 (234)
T ss_pred HHHHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHH
Confidence 44555555566678999999999999999998887789999999999999999999999999888999999998764321
Q ss_pred -----CCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCC
Q 009708 404 -----TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSI 468 (528)
Q Consensus 404 -----~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~ 468 (528)
.++||.|++|++- ..+..+++.+.++|+|||.|+...+-+
T Consensus 137 ~~~~~~~~fD~VfiDa~k-------------------------~~y~~~~~~~~~ll~~GG~ii~dn~l~ 181 (234)
T PLN02781 137 LNNDPKPEFDFAFVDADK-------------------------PNYVHFHEQLLKLVKVGGIIAFDNTLW 181 (234)
T ss_pred HhCCCCCCCCEEEECCCH-------------------------HHHHHHHHHHHHhcCCCeEEEEEcCCc
Confidence 3589999999764 123346888999999999998766543
No 55
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.42 E-value=2.3e-12 Score=134.24 Aligned_cols=127 Identities=14% Similarity=0.061 Sum_probs=99.1
Q ss_pred cchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCC--ccEEEEcCcccc
Q 009708 321 DESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVN--SVIRTIHADLRT 398 (528)
Q Consensus 321 d~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~--~~i~~~~~D~~~ 398 (528)
|.++.++...+....+.+|||+|||+|..++.+++. .+..+|+++|+|+.+++.+++|++.++.. .+++++..|+..
T Consensus 214 D~GtrllL~~lp~~~~~~VLDLGCGtGvi~i~la~~-~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~ 292 (378)
T PRK15001 214 DIGARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDK-NPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS 292 (378)
T ss_pred ChHHHHHHHhCCcccCCeEEEEeccccHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccc
Confidence 778888888887665679999999999999999987 45689999999999999999999988754 257888888865
Q ss_pred ccccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 399 FADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 399 ~~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
... ..+||+|++|||+.-... .+.. .-.+++..+.+.|+|||.|++..-.
T Consensus 293 ~~~--~~~fDlIlsNPPfh~~~~----------~~~~-------ia~~l~~~a~~~LkpGG~L~iV~nr 342 (378)
T PRK15001 293 GVE--PFRFNAVLCNPPFHQQHA----------LTDN-------VAWEMFHHARRCLKINGELYIVANR 342 (378)
T ss_pred cCC--CCCEEEEEECcCcccCcc----------CCHH-------HHHHHHHHHHHhcccCCEEEEEEec
Confidence 332 357999999999832111 0111 1235799999999999999877533
No 56
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.42 E-value=1.8e-12 Score=134.17 Aligned_cols=129 Identities=15% Similarity=0.184 Sum_probs=101.7
Q ss_pred cchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccc
Q 009708 321 DESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 400 (528)
Q Consensus 321 d~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~ 400 (528)
|.++.++...+......+|||+|||+|..+..++++ .+..+|+++|+|+.+++.+++|++.+++.. +++..|+....
T Consensus 182 D~gt~lLl~~l~~~~~g~VLDlGCG~G~ls~~la~~-~p~~~v~~vDis~~Al~~A~~nl~~n~l~~--~~~~~D~~~~~ 258 (342)
T PRK09489 182 DVGSQLLLSTLTPHTKGKVLDVGCGAGVLSAVLARH-SPKIRLTLSDVSAAALESSRATLAANGLEG--EVFASNVFSDI 258 (342)
T ss_pred CHHHHHHHHhccccCCCeEEEeccCcCHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHcCCCC--EEEEccccccc
Confidence 667788877776555668999999999999999987 345689999999999999999999999863 56778876532
Q ss_pred ccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchh
Q 009708 401 DNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEE 472 (528)
Q Consensus 401 ~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~E 472 (528)
.++||.|++|||.- .|. ......-.+++..+.++|||||.|++..+++.+.+
T Consensus 259 ---~~~fDlIvsNPPFH-~g~----------------~~~~~~~~~~i~~a~~~LkpgG~L~iVan~~l~y~ 310 (342)
T PRK09489 259 ---KGRFDMIISNPPFH-DGI----------------QTSLDAAQTLIRGAVRHLNSGGELRIVANAFLPYP 310 (342)
T ss_pred ---CCCccEEEECCCcc-CCc----------------cccHHHHHHHHHHHHHhcCcCCEEEEEEeCCCChH
Confidence 36899999999972 111 00012235679999999999999999988887765
No 57
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.41 E-value=4e-12 Score=128.07 Aligned_cols=165 Identities=20% Similarity=0.187 Sum_probs=106.8
Q ss_pred cceeEeecchHHHHHHhc-CCCCCC-eEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEE
Q 009708 314 EGLCAVQDESAGLVVAVV-DPQPGQ-SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRT 391 (528)
Q Consensus 314 ~G~~~~Qd~~s~l~~~~l-~~~~g~-~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~ 391 (528)
.+.++....+..++..++ ...... +|||+|||+|..++.++... +...|+|+|+|+.+++.|++|++++|+. ++.+
T Consensus 87 ~~vliPr~dTe~Lve~~l~~~~~~~~~ilDlGTGSG~iai~la~~~-~~~~V~a~Dis~~Al~~A~~Na~~~~l~-~~~~ 164 (280)
T COG2890 87 EGVLIPRPDTELLVEAALALLLQLDKRILDLGTGSGAIAIALAKEG-PDAEVIAVDISPDALALARENAERNGLV-RVLV 164 (280)
T ss_pred CCceecCCchHHHHHHHHHhhhhcCCcEEEecCChHHHHHHHHhhC-cCCeEEEEECCHHHHHHHHHHHHHcCCc-cEEE
Confidence 444555444544444432 222222 79999999999999999874 3479999999999999999999999984 4666
Q ss_pred EcCccccccccCCCCCCEEEEcCCCCCCccccCCchhhccCCHH----HHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 392 IHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLE----DMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 392 ~~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~----~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
+.+|.+.... ++||+|++|||+-..-.....|+.... .+. .-....+..++++..+..+|+|||.+++- ++
T Consensus 165 ~~~dlf~~~~---~~fDlIVsNPPYip~~~~~~~~~~~~~-EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le-~g 239 (280)
T COG2890 165 VQSDLFEPLR---GKFDLIVSNPPYIPAEDPELLPEVVRY-EPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILE-IG 239 (280)
T ss_pred EeeecccccC---CceeEEEeCCCCCCCcccccChhhhcc-CHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEE-EC
Confidence 7667765432 489999999999433211111211100 000 00134567889999999999999988743 33
Q ss_pred CCchhhHHHHHHHHhhCCCce
Q 009708 468 IDPEENEERVEAFLLRHPEFS 488 (528)
Q Consensus 468 ~~~~Ene~~v~~~l~~~~~~~ 488 (528)
... .+ .|.+.+.+...|.
T Consensus 240 ~~q--~~-~v~~~~~~~~~~~ 257 (280)
T COG2890 240 LTQ--GE-AVKALFEDTGFFE 257 (280)
T ss_pred CCc--HH-HHHHHHHhcCCce
Confidence 333 33 3445555543244
No 58
>PLN02476 O-methyltransferase
Probab=99.41 E-value=3.4e-12 Score=127.35 Aligned_cols=125 Identities=18% Similarity=0.206 Sum_probs=103.3
Q ss_pred ecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccc
Q 009708 320 QDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF 399 (528)
Q Consensus 320 Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~ 399 (528)
.....+++..++...+..+|||+|+|+|..|+++|..+++.|+|+++|.++++++.+++|+++.|+.++|+++.+|+.+.
T Consensus 103 ~~~~g~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~ 182 (278)
T PLN02476 103 SPDQAQLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAES 182 (278)
T ss_pred CHHHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHH
Confidence 34445566666666667899999999999999999988878899999999999999999999999998899999999876
Q ss_pred cccC-----CCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCC
Q 009708 400 ADNS-----TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSID 469 (528)
Q Consensus 400 ~~~~-----~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~ 469 (528)
.+.. .++||.||+|++- ..+...++.+.++|+|||.||+-.+-++
T Consensus 183 L~~l~~~~~~~~FD~VFIDa~K-------------------------~~Y~~y~e~~l~lL~~GGvIV~DNvL~~ 232 (278)
T PLN02476 183 LKSMIQNGEGSSYDFAFVDADK-------------------------RMYQDYFELLLQLVRVGGVIVMDNVLWH 232 (278)
T ss_pred HHHHHhcccCCCCCEEEECCCH-------------------------HHHHHHHHHHHHhcCCCcEEEEecCccC
Confidence 5432 3579999999875 1245568888999999999997766443
No 59
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.41 E-value=2.8e-12 Score=127.61 Aligned_cols=129 Identities=22% Similarity=0.283 Sum_probs=104.8
Q ss_pred cchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccc
Q 009708 321 DESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 400 (528)
Q Consensus 321 d~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~ 400 (528)
|..|+++.+.+....+.+|||+|||.|-.++.+++. .+..+|+-+|+|..+++.+++|++.+++++. .++..|...-.
T Consensus 144 D~GS~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~-~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~-~v~~s~~~~~v 221 (300)
T COG2813 144 DKGSRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKK-SPQAKLTLVDVNARAVESARKNLAANGVENT-EVWASNLYEPV 221 (300)
T ss_pred ChHHHHHHHhCCccCCCcEEEeCCCccHHHHHHHHh-CCCCeEEEEecCHHHHHHHHHhHHHcCCCcc-EEEEecccccc
Confidence 789999999998887779999999999999999998 4578999999999999999999999999974 66777776543
Q ss_pred ccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCch
Q 009708 401 DNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPE 471 (528)
Q Consensus 401 ~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~ 471 (528)
. ++||.|++|||.. .|. ......-.+++..|...|++||.|.+..-...+-
T Consensus 222 ~---~kfd~IisNPPfh-~G~----------------~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~l~y 272 (300)
T COG2813 222 E---GKFDLIISNPPFH-AGK----------------AVVHSLAQEIIAAAARHLKPGGELWIVANRHLPY 272 (300)
T ss_pred c---ccccEEEeCCCcc-CCc----------------chhHHHHHHHHHHHHHhhccCCEEEEEEcCCCCh
Confidence 2 4899999999983 121 1122233468999999999999998776654443
No 60
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.40 E-value=5.2e-12 Score=125.02 Aligned_cols=142 Identities=19% Similarity=0.215 Sum_probs=101.0
Q ss_pred CCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEcC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDA 414 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~ 414 (528)
.+.+|||+|||+|..+..++...+ ..+++++|+++.+++.++++++.+++++ ++++++|+.... ..++||+|++||
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~~-~~~~~~d~~~~~--~~~~fD~Vi~np 162 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERP-DARVTAVDISPEALAVARKNAARLGLDN-VTFLQSDWFEPL--PGGKFDLIVSNP 162 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCe-EEEEECchhccC--cCCceeEEEECC
Confidence 345899999999999999998753 5699999999999999999999999874 899999987633 236899999999
Q ss_pred CCCCCccccCC-chhhccCCHHH---HHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchhhHHHHHHHHhhC
Q 009708 415 PCSGLGVLSKR-ADLRWNRRLED---MEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRH 484 (528)
Q Consensus 415 Pcsg~G~~~~~-pd~~~~~~~~~---~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~Ene~~v~~~l~~~ 484 (528)
|+...+..... ++++....... -.........+++.+.++|+|||.+++.. +.. ..+.+..++.++
T Consensus 163 Py~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~-~~~---~~~~~~~~l~~~ 232 (251)
T TIGR03534 163 PYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEI-GYD---QGEAVRALFEAA 232 (251)
T ss_pred CCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEE-Ccc---HHHHHHHHHHhC
Confidence 99876543321 11110000000 01122345678999999999999998753 222 223455666664
No 61
>PRK14968 putative methyltransferase; Provisional
Probab=99.40 E-value=3.4e-12 Score=120.48 Aligned_cols=156 Identities=21% Similarity=0.258 Sum_probs=107.8
Q ss_pred HHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCcc-EEEEcCcccccccc
Q 009708 324 AGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSV-IRTIHADLRTFADN 402 (528)
Q Consensus 324 s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~-i~~~~~D~~~~~~~ 402 (528)
+.++...+...++.+|||+|||+|..+..++.. ..+|+++|+++.+++.+++++..+++.++ +.++++|+.+...
T Consensus 12 ~~~l~~~~~~~~~~~vLd~G~G~G~~~~~l~~~---~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~- 87 (188)
T PRK14968 12 SFLLAENAVDKKGDRVLEVGTGSGIVAIVAAKN---GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFR- 87 (188)
T ss_pred HHHHHHhhhccCCCEEEEEccccCHHHHHHHhh---cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccccc-
Confidence 455556666678889999999999999999986 47999999999999999999999888654 7888888866432
Q ss_pred CCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchhhHHHHHHHHh
Q 009708 403 STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLL 482 (528)
Q Consensus 403 ~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~Ene~~v~~~l~ 482 (528)
...||+|++|+|+...+......+ .|......-.........+++++.++|||||.+++..++....+ .+..++.
T Consensus 88 -~~~~d~vi~n~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~~~---~l~~~~~ 162 (188)
T PRK14968 88 -GDKFDVILFNPPYLPTEEEEEWDD-WLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTGED---EVLEYLE 162 (188)
T ss_pred -ccCceEEEECCCcCCCCchhhhhh-hhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCCHH---HHHHHHH
Confidence 247999999999854321111000 00000000001123456789999999999999988777765432 3445666
Q ss_pred hCCCceE
Q 009708 483 RHPEFSI 489 (528)
Q Consensus 483 ~~~~~~~ 489 (528)
+. +|++
T Consensus 163 ~~-g~~~ 168 (188)
T PRK14968 163 KL-GFEA 168 (188)
T ss_pred HC-CCee
Confidence 54 4544
No 62
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.39 E-value=5.5e-12 Score=119.57 Aligned_cols=106 Identities=20% Similarity=0.250 Sum_probs=88.0
Q ss_pred CCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEcC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDA 414 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~ 414 (528)
++.+|||+|||+|..++.++... +.++|+++|+++.+++.++++++.+++++ ++++++|+.++.. .++||+|+++.
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~-~~~~V~giD~s~~~l~~A~~~~~~~~l~~-i~~~~~d~~~~~~--~~~fDlV~~~~ 120 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIAR-PELKVTLVDSLGKKIAFLREVAAELGLKN-VTVVHGRAEEFGQ--EEKFDVVTSRA 120 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHcCCCC-EEEEeccHhhCCC--CCCccEEEEcc
Confidence 47899999999999999998764 46899999999999999999999999987 9999999988654 46899999852
Q ss_pred CCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCc
Q 009708 415 PCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDP 470 (528)
Q Consensus 415 Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~ 470 (528)
- ..+ ..+++.++++|||||++++.......
T Consensus 121 ~-------------------~~~-------~~~l~~~~~~LkpGG~lv~~~~~~~~ 150 (187)
T PRK00107 121 V-------------------ASL-------SDLVELCLPLLKPGGRFLALKGRDPE 150 (187)
T ss_pred c-------------------cCH-------HHHHHHHHHhcCCCeEEEEEeCCChH
Confidence 0 011 34689999999999999987655433
No 63
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=99.38 E-value=3.1e-12 Score=129.50 Aligned_cols=128 Identities=20% Similarity=0.253 Sum_probs=104.5
Q ss_pred cchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcC-ccccc
Q 009708 321 DESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHA-DLRTF 399 (528)
Q Consensus 321 d~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~-D~~~~ 399 (528)
..-|..++.+..+++|+.|||-+||||++.+.+... +.+++|+|++..++.-++.|++.+|+++ ..+... |++++
T Consensus 183 P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~---G~~viG~Did~~mv~gak~Nl~~y~i~~-~~~~~~~Da~~l 258 (347)
T COG1041 183 PRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLM---GARVIGSDIDERMVRGAKINLEYYGIED-YPVLKVLDATNL 258 (347)
T ss_pred HHHHHHHHHHhccccCCEeecCcCCccHHHHhhhhc---CceEeecchHHHHHhhhhhhhhhhCcCc-eeEEEecccccC
Confidence 345778888889999999999999999999988754 5799999999999999999999999886 555555 99888
Q ss_pred cccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcC
Q 009708 400 ADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTC 466 (528)
Q Consensus 400 ~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTc 466 (528)
+-. ..+||.|.+|||+.-+.. .....+.+++.++|+.+.+.||+||++|+.+-
T Consensus 259 pl~-~~~vdaIatDPPYGrst~-------------~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 259 PLR-DNSVDAIATDPPYGRSTK-------------IKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred CCC-CCccceEEecCCCCcccc-------------cccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 732 336999999999942221 11222667789999999999999999998765
No 64
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=99.38 E-value=1e-11 Score=117.08 Aligned_cols=129 Identities=21% Similarity=0.245 Sum_probs=94.3
Q ss_pred cchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCc--------EEEEEcCChHHHHHHHHHHHHcCCCccEEEE
Q 009708 321 DESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQG--------LVYAIDINKGRLRILNETAKLHQVNSVIRTI 392 (528)
Q Consensus 321 d~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~--------~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~ 392 (528)
..-+..++.+.++++|+.|||.+||+|++.+..+....+.. +++|+|+++.+++.+++|++..|+.+.+.+.
T Consensus 14 ~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~ 93 (179)
T PF01170_consen 14 PTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFI 93 (179)
T ss_dssp HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEE
T ss_pred HHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEE
Confidence 33466677778889999999999999999998887654333 3899999999999999999999999889999
Q ss_pred cCccccccccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcC
Q 009708 393 HADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTC 466 (528)
Q Consensus 393 ~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTc 466 (528)
+.|+..+.. ..+.+|.|++|||+. . ....-..+.+++.++++.+.+.+++ ..++.++
T Consensus 94 ~~D~~~l~~-~~~~~d~IvtnPPyG---~-----------r~~~~~~~~~ly~~~~~~~~~~l~~--~~v~l~~ 150 (179)
T PF01170_consen 94 QWDARELPL-PDGSVDAIVTNPPYG---R-----------RLGSKKDLEKLYRQFLRELKRVLKP--RAVFLTT 150 (179)
T ss_dssp E--GGGGGG-TTSBSCEEEEE--ST---T-----------SHCHHHHHHHHHHHHHHHHHCHSTT--CEEEEEE
T ss_pred ecchhhccc-ccCCCCEEEECcchh---h-----------hccCHHHHHHHHHHHHHHHHHHCCC--CEEEEEE
Confidence 999999872 346899999999993 1 1123344577899999999999998 3444443
No 65
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.37 E-value=1.6e-11 Score=133.62 Aligned_cols=139 Identities=19% Similarity=0.214 Sum_probs=101.0
Q ss_pred CCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEcC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDA 414 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~ 414 (528)
++.+|||+|||+|..++.++..++ ..+|+|+|+|+.+++.+++|++.+++.++++++++|+..... .++||+|++||
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p-~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~--~~~fDlIvsNP 214 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELP-NANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIE--KQKFDFIVSNP 214 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCC-CCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCc--CCCccEEEECC
Confidence 346899999999999999988753 579999999999999999999999987779999999865332 35799999999
Q ss_pred CCCCCccccC--------CchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchhhHHHHHHHHhhC
Q 009708 415 PCSGLGVLSK--------RADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRH 484 (528)
Q Consensus 415 Pcsg~G~~~~--------~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~Ene~~v~~~l~~~ 484 (528)
|+........ .|...+-- -......++.++..+.++|+|||.+++. +... . .+.+..++.+.
T Consensus 215 PYi~~~~~~~l~~~v~~~EP~~AL~g----g~dGl~~~~~il~~a~~~L~~gG~l~lE-ig~~--q-~~~v~~~~~~~ 284 (506)
T PRK01544 215 PYISHSEKSEMAIETINYEPSIALFA----EEDGLQAYFIIAENAKQFLKPNGKIILE-IGFK--Q-EEAVTQIFLDH 284 (506)
T ss_pred CCCCchhhhhcCchhhccCcHHHhcC----CccHHHHHHHHHHHHHHhccCCCEEEEE-ECCc--h-HHHHHHHHHhc
Confidence 9965443211 11111110 1123456788999999999999999864 3322 2 23445555543
No 66
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.37 E-value=4.1e-12 Score=122.08 Aligned_cols=139 Identities=19% Similarity=0.334 Sum_probs=108.6
Q ss_pred HHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCC-----cEEEEEcCChHHHHHHHHHHHHcCCCcc--EEEEcCcccc
Q 009708 326 LVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQ-----GLVYAIDINKGRLRILNETAKLHQVNSV--IRTIHADLRT 398 (528)
Q Consensus 326 l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~-----~~v~avD~s~~~l~~~~~n~~~~g~~~~--i~~~~~D~~~ 398 (528)
+.+..+.|..|.+|||+|||+|-.+.-+....+.. ++|+.+|+|+++|..+++++++.++... +.++++|+.+
T Consensus 91 ~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~ 170 (296)
T KOG1540|consen 91 MFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAED 170 (296)
T ss_pred HhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCccc
Confidence 34566788889999999999999999999987654 7999999999999999999988888654 8999999999
Q ss_pred ccccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchhhHHHHH
Q 009708 399 FADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVE 478 (528)
Q Consensus 399 ~~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~Ene~~v~ 478 (528)
++ .+..+||...+ +.|+ +.- .++.+ -|++|+++|||||++. |--++.+|.+.+.
T Consensus 171 Lp-Fdd~s~D~yTi-----afGI-RN~---------th~~k-------~l~EAYRVLKpGGrf~---cLeFskv~~~~l~ 224 (296)
T KOG1540|consen 171 LP-FDDDSFDAYTI-----AFGI-RNV---------THIQK-------ALREAYRVLKPGGRFS---CLEFSKVENEPLK 224 (296)
T ss_pred CC-CCCCcceeEEE-----ecce-ecC---------CCHHH-------HHHHHHHhcCCCcEEE---EEEccccccHHHH
Confidence 87 34578998764 4444 221 22322 4999999999999988 7666666656788
Q ss_pred HHHhhCCCceEec
Q 009708 479 AFLLRHPEFSIDP 491 (528)
Q Consensus 479 ~~l~~~~~~~~~~ 491 (528)
+|...+. |++.|
T Consensus 225 ~fy~~ys-f~Vlp 236 (296)
T KOG1540|consen 225 WFYDQYS-FDVLP 236 (296)
T ss_pred HHHHhhh-hhhhc
Confidence 8877653 44444
No 67
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.37 E-value=1.2e-11 Score=116.95 Aligned_cols=125 Identities=14% Similarity=0.180 Sum_probs=93.8
Q ss_pred CCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEcC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDA 414 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~ 414 (528)
+|.+|||+|||+|..+..++.. .+.++|+|+|.|+.+++.++++++++|+++ ++++++|+.++.. .++||.|+++.
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~-~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~-i~~i~~d~~~~~~--~~~fD~I~s~~ 117 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIA-RPELKLTLLESNHKKVAFLREVKAELGLNN-VEIVNGRAEDFQH--EEQFDVITSRA 117 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHH-CCCCeEEEEeCcHHHHHHHHHHHHHhCCCC-eEEEecchhhccc--cCCccEEEehh
Confidence 3789999999999999998865 456799999999999999999999999876 9999999988632 36899999863
Q ss_pred CCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchhhHHHHHHHHhhC--CCceEecC
Q 009708 415 PCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRH--PEFSIDPA 492 (528)
Q Consensus 415 Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~Ene~~v~~~l~~~--~~~~~~~~ 492 (528)
. .++ ..+++.+.++|+|||++++.. ....+..+....++. .++++++.
T Consensus 118 -~------------------~~~-------~~~~~~~~~~LkpgG~lvi~~----~~~~~~~~~~~~e~~~~~~~~~~~~ 167 (181)
T TIGR00138 118 -L------------------ASL-------NVLLELTLNLLKVGGYFLAYK----GKKYLDEIEEAKRKCQVLGVEPLEV 167 (181)
T ss_pred -h------------------hCH-------HHHHHHHHHhcCCCCEEEEEc----CCCcHHHHHHHHHhhhhcCceEeec
Confidence 1 011 235777899999999999652 333344454555542 35665554
Q ss_pred C
Q 009708 493 D 493 (528)
Q Consensus 493 ~ 493 (528)
+
T Consensus 168 ~ 168 (181)
T TIGR00138 168 P 168 (181)
T ss_pred c
Confidence 3
No 68
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.37 E-value=1.7e-11 Score=120.02 Aligned_cols=117 Identities=19% Similarity=0.277 Sum_probs=93.0
Q ss_pred HHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCC
Q 009708 325 GLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNST 404 (528)
Q Consensus 325 ~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~ 404 (528)
..+...+.+++|.+|||+|||+|..+..+++..++.++|+++|+++.+++.++++++..++++ ++++++|+..++. ..
T Consensus 35 ~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~-~~ 112 (231)
T TIGR02752 35 KDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHN-VELVHGNAMELPF-DD 112 (231)
T ss_pred HHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCc-eEEEEechhcCCC-CC
Confidence 344556778889999999999999999999887667899999999999999999999888864 8999999987642 24
Q ss_pred CCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEc
Q 009708 405 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465 (528)
Q Consensus 405 ~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysT 465 (528)
++||.|+++-.. ...++ ..++|+++.++|+|||+++..+
T Consensus 113 ~~fD~V~~~~~l------~~~~~----------------~~~~l~~~~~~Lk~gG~l~~~~ 151 (231)
T TIGR02752 113 NSFDYVTIGFGL------RNVPD----------------YMQVLREMYRVVKPGGKVVCLE 151 (231)
T ss_pred CCccEEEEeccc------ccCCC----------------HHHHHHHHHHHcCcCeEEEEEE
Confidence 689999975322 11111 1346899999999999998654
No 69
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.35 E-value=7.2e-12 Score=119.74 Aligned_cols=139 Identities=19% Similarity=0.187 Sum_probs=100.0
Q ss_pred CCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc--CCCCCCEEEE
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN--STVKCDKVLL 412 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~--~~~~fD~Vl~ 412 (528)
.+.+|||+|||+|..+..+|... +...++|+|+++.+++.++++++..++.+ ++++++|+..+... ..+.+|.|++
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~-p~~~v~gvD~~~~~l~~a~~~~~~~~l~n-i~~i~~d~~~~~~~~~~~~~~d~v~~ 93 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQN-PDKNFLGIEIHTPIVLAANNKANKLGLKN-LHVLCGDANELLDKFFPDGSLSKVFL 93 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHhCCCC-EEEEccCHHHHHHhhCCCCceeEEEE
Confidence 45689999999999999999874 56799999999999999999999999985 99999999876432 1357999999
Q ss_pred cCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchhhHHHHHHHHhhCCCceEecC
Q 009708 413 DAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPA 492 (528)
Q Consensus 413 D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~Ene~~v~~~l~~~~~~~~~~~ 492 (528)
+.|.- +.+....+.+ -.+..+++.+.++|||||.|+++|- ....-+.+...+..++.|+....
T Consensus 94 ~~pdp----w~k~~h~~~r----------~~~~~~l~~~~r~LkpgG~l~~~td---~~~~~~~~~~~~~~~~~f~~~~~ 156 (194)
T TIGR00091 94 NFPDP----WPKKRHNKRR----------ITQPHFLKEYANVLKKGGVIHFKTD---NEPLFEDMLKVLSENDLFENTSK 156 (194)
T ss_pred ECCCc----CCCCCccccc----------cCCHHHHHHHHHHhCCCCEEEEEeC---CHHHHHHHHHHHHhCCCeEeccc
Confidence 87631 0000000000 1135679999999999999987662 22222233455666777776543
No 70
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.35 E-value=1e-11 Score=123.25 Aligned_cols=140 Identities=19% Similarity=0.323 Sum_probs=107.5
Q ss_pred hHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc
Q 009708 323 SAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN 402 (528)
Q Consensus 323 ~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~ 402 (528)
.-.++...+.++||++|||+|||.|+.++++|+.. +.+|+|+++|++..+.+++.++..|++.++++...|..++.
T Consensus 60 k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y--~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~-- 135 (283)
T COG2230 60 KLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEY--GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE-- 135 (283)
T ss_pred HHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHc--CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc--
Confidence 34566777899999999999999999999999985 57999999999999999999999999977999999998876
Q ss_pred CCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchhhHHHHHHHHh
Q 009708 403 STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLL 482 (528)
Q Consensus 403 ~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~Ene~~v~~~l~ 482 (528)
++||.|++ .|++-+- . .+.+..+++.+.++|+|||.++..+-+....+.. ....|+.
T Consensus 136 --e~fDrIvS------vgmfEhv-------g-------~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~-~~~~~i~ 192 (283)
T COG2230 136 --EPFDRIVS------VGMFEHV-------G-------KENYDDFFKKVYALLKPGGRMLLHSITGPDQEFR-RFPDFID 192 (283)
T ss_pred --cccceeee------hhhHHHh-------C-------cccHHHHHHHHHhhcCCCceEEEEEecCCCcccc-cchHHHH
Confidence 34999985 2332110 0 1224567999999999999999876654443222 3445666
Q ss_pred hC--CCceE
Q 009708 483 RH--PEFSI 489 (528)
Q Consensus 483 ~~--~~~~~ 489 (528)
++ |+..+
T Consensus 193 ~yiFPgG~l 201 (283)
T COG2230 193 KYIFPGGEL 201 (283)
T ss_pred HhCCCCCcC
Confidence 65 55443
No 71
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.34 E-value=1e-11 Score=124.23 Aligned_cols=120 Identities=17% Similarity=0.292 Sum_probs=90.4
Q ss_pred HHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHH---cCCCccEEEEcCcccccccc
Q 009708 326 LVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKL---HQVNSVIRTIHADLRTFADN 402 (528)
Q Consensus 326 l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~---~g~~~~i~~~~~D~~~~~~~ 402 (528)
++...+.+.++++|||+|||+|..+..+++.+++.++|+|+|+|+.+++.++++... .+.+ +++++++|+.+++.
T Consensus 64 ~~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~-~i~~~~~d~~~lp~- 141 (261)
T PLN02233 64 MAVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYK-NIEWIEGDATDLPF- 141 (261)
T ss_pred HHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCC-CeEEEEcccccCCC-
Confidence 344566778899999999999999999998766567999999999999999887642 2233 48999999988653
Q ss_pred CCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCC
Q 009708 403 STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSID 469 (528)
Q Consensus 403 ~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~ 469 (528)
..++||.|++.- + +..-+ + ...+|.++.++|||||+++..+.+-.
T Consensus 142 ~~~sfD~V~~~~-----~-l~~~~---------d-------~~~~l~ei~rvLkpGG~l~i~d~~~~ 186 (261)
T PLN02233 142 DDCYFDAITMGY-----G-LRNVV---------D-------RLKAMQEMYRVLKPGSRVSILDFNKS 186 (261)
T ss_pred CCCCEeEEEEec-----c-cccCC---------C-------HHHHHHHHHHHcCcCcEEEEEECCCC
Confidence 246899998631 1 11111 1 23469999999999999998876543
No 72
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.34 E-value=3.9e-12 Score=122.49 Aligned_cols=119 Identities=15% Similarity=0.228 Sum_probs=91.3
Q ss_pred ceeEeecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcC
Q 009708 315 GLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHA 394 (528)
Q Consensus 315 G~~~~Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~ 394 (528)
|....|......+.++++++||++|||+|||+|..|..++.+.+..++|+++|+++..++.+++|++.++..| ++++++
T Consensus 52 ~~~is~P~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~n-v~~~~g 130 (209)
T PF01135_consen 52 GQTISAPSMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDN-VEVVVG 130 (209)
T ss_dssp TEEE--HHHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHS-EEEEES
T ss_pred eeechHHHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCc-eeEEEc
Confidence 4444444445567778899999999999999999999999998888899999999999999999999999986 899999
Q ss_pred ccccccccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEE
Q 009708 395 DLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463 (528)
Q Consensus 395 D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvy 463 (528)
|...-.+. ...||+|++.+.+.. +-....+.|++||+||.
T Consensus 131 dg~~g~~~-~apfD~I~v~~a~~~----------------------------ip~~l~~qL~~gGrLV~ 170 (209)
T PF01135_consen 131 DGSEGWPE-EAPFDRIIVTAAVPE----------------------------IPEALLEQLKPGGRLVA 170 (209)
T ss_dssp -GGGTTGG-G-SEEEEEESSBBSS------------------------------HHHHHTEEEEEEEEE
T ss_pred chhhcccc-CCCcCEEEEeeccch----------------------------HHHHHHHhcCCCcEEEE
Confidence 98764433 357999999876621 12335677999999994
No 73
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=9.1e-12 Score=118.12 Aligned_cols=119 Identities=16% Similarity=0.208 Sum_probs=98.2
Q ss_pred cceeEeecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEc
Q 009708 314 EGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIH 393 (528)
Q Consensus 314 ~G~~~~Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~ 393 (528)
.|.++-|-.....+.++|.+++|++||++|||+|..+..||+. .++|+++|+.+...+.|++|++.+|+.| |.+++
T Consensus 51 ~gqtis~P~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l---~~~V~siEr~~~L~~~A~~~L~~lg~~n-V~v~~ 126 (209)
T COG2518 51 CGQTISAPHMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARL---VGRVVSIERIEELAEQARRNLETLGYEN-VTVRH 126 (209)
T ss_pred CCceecCcHHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHH---hCeEEEEEEcHHHHHHHHHHHHHcCCCc-eEEEE
Confidence 6777777666778888999999999999999999999999998 3599999999999999999999999998 99999
Q ss_pred CccccccccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEc
Q 009708 394 ADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465 (528)
Q Consensus 394 ~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysT 465 (528)
+|...-.+. ...||+|++.+-+.. +=+...+.||+||+||.-.
T Consensus 127 gDG~~G~~~-~aPyD~I~Vtaaa~~----------------------------vP~~Ll~QL~~gGrlv~Pv 169 (209)
T COG2518 127 GDGSKGWPE-EAPYDRIIVTAAAPE----------------------------VPEALLDQLKPGGRLVIPV 169 (209)
T ss_pred CCcccCCCC-CCCcCEEEEeeccCC----------------------------CCHHHHHhcccCCEEEEEE
Confidence 999774432 368999998755511 1233456799999999643
No 74
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.33 E-value=1.7e-11 Score=128.70 Aligned_cols=85 Identities=20% Similarity=0.248 Sum_probs=71.2
Q ss_pred hcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCE
Q 009708 330 VVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDK 409 (528)
Q Consensus 330 ~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~ 409 (528)
++...++.+|||+|||+|..++.++.. ..+|+|+|+++.+++.+++|++.+++++ ++++++|+.++......+||+
T Consensus 228 ~l~~~~~~~vLDL~cG~G~~~l~la~~---~~~v~~vE~~~~av~~a~~N~~~~~~~~-~~~~~~d~~~~~~~~~~~~D~ 303 (374)
T TIGR02085 228 WVREIPVTQMWDLFCGVGGFGLHCAGP---DTQLTGIEIESEAIACAQQSAQMLGLDN-LSFAALDSAKFATAQMSAPEL 303 (374)
T ss_pred HHHhcCCCEEEEccCCccHHHHHHhhc---CCeEEEEECCHHHHHHHHHHHHHcCCCc-EEEEECCHHHHHHhcCCCCCE
Confidence 333345679999999999999999864 4689999999999999999999999974 999999998765322246999
Q ss_pred EEEcCCCCC
Q 009708 410 VLLDAPCSG 418 (528)
Q Consensus 410 Vl~D~Pcsg 418 (528)
|++|||..|
T Consensus 304 vi~DPPr~G 312 (374)
T TIGR02085 304 VLVNPPRRG 312 (374)
T ss_pred EEECCCCCC
Confidence 999999864
No 75
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.33 E-value=6.6e-12 Score=120.74 Aligned_cols=116 Identities=16% Similarity=0.238 Sum_probs=87.9
Q ss_pred CCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcc-ccccc-cCCCCCCEEEE
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADL-RTFAD-NSTVKCDKVLL 412 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~-~~~~~-~~~~~fD~Vl~ 412 (528)
++.+|||+|||+|..+..+++.. +..+|+|+|+|+.+++.++++++..++.+ +.++++|+ ..+.. ...+.||.|++
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~-p~~~v~gVD~s~~~i~~a~~~~~~~~~~~-v~~~~~d~~~~l~~~~~~~~~D~V~~ 117 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKAN-PDINFIGIEVHEPGVGKALKKIEEEGLTN-LRLLCGDAVEVLLDMFPDGSLDRIYL 117 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHC-CCccEEEEEechHHHHHHHHHHHHcCCCC-EEEEecCHHHHHHHHcCccccceEEE
Confidence 56799999999999999999875 45789999999999999999999998865 89999999 55432 22467999998
Q ss_pred cCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcC
Q 009708 413 DAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTC 466 (528)
Q Consensus 413 D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTc 466 (528)
+.|.. |......... ..+..+++.+.++|||||+++++++
T Consensus 118 ~~~~p------------~~~~~~~~~~--~~~~~~l~~i~~~LkpgG~l~i~~~ 157 (202)
T PRK00121 118 NFPDP------------WPKKRHHKRR--LVQPEFLALYARKLKPGGEIHFATD 157 (202)
T ss_pred ECCCC------------CCCccccccc--cCCHHHHHHHHHHcCCCCEEEEEcC
Confidence 75431 1000000000 1245679999999999999998765
No 76
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.32 E-value=2.7e-11 Score=116.50 Aligned_cols=124 Identities=23% Similarity=0.285 Sum_probs=105.0
Q ss_pred cchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEc-Cccccc
Q 009708 321 DESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIH-ADLRTF 399 (528)
Q Consensus 321 d~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~-~D~~~~ 399 (528)
.+...++..++...+..+||++|++.|.-+++||..++..++++++|+++++.+.|++|+++.|+.++|+++. +|+.+.
T Consensus 45 ~e~g~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~ 124 (219)
T COG4122 45 PETGALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDV 124 (219)
T ss_pred hhHHHHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHH
Confidence 5556677777777778899999999999999999999878899999999999999999999999999888888 588876
Q ss_pred ccc-CCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCC
Q 009708 400 ADN-STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSID 469 (528)
Q Consensus 400 ~~~-~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~ 469 (528)
... ..++||.||+|+--+ .|..+++.+.++|+|||.+|.-...+.
T Consensus 125 l~~~~~~~fDliFIDadK~-------------------------~yp~~le~~~~lLr~GGliv~DNvl~~ 170 (219)
T COG4122 125 LSRLLDGSFDLVFIDADKA-------------------------DYPEYLERALPLLRPGGLIVADNVLFG 170 (219)
T ss_pred HHhccCCCccEEEEeCChh-------------------------hCHHHHHHHHHHhCCCcEEEEeecccC
Confidence 653 357899999996652 245579999999999999987666554
No 77
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.32 E-value=2.3e-11 Score=117.71 Aligned_cols=119 Identities=17% Similarity=0.193 Sum_probs=92.7
Q ss_pred ceeEeecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcC
Q 009708 315 GLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHA 394 (528)
Q Consensus 315 G~~~~Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~ 394 (528)
|.++.+......+...+.++++.+|||+|||+|..+..++... ++|+++|+++.+++.++++++++++.+ ++++++
T Consensus 58 ~~~~~~p~~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~---~~v~~vd~~~~~~~~a~~~~~~~~~~~-v~~~~~ 133 (212)
T PRK00312 58 GQTISQPYMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLV---RRVFSVERIKTLQWEAKRRLKQLGLHN-VSVRHG 133 (212)
T ss_pred CCeeCcHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHh---CEEEEEeCCHHHHHHHHHHHHHCCCCc-eEEEEC
Confidence 3344444444566677888899999999999999999888762 589999999999999999999999986 899999
Q ss_pred ccccccccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcC
Q 009708 395 DLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTC 466 (528)
Q Consensus 395 D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTc 466 (528)
|+...... .++||+|+++.++.. +.....+.|+|||+|+....
T Consensus 134 d~~~~~~~-~~~fD~I~~~~~~~~----------------------------~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 134 DGWKGWPA-YAPFDRILVTAAAPE----------------------------IPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred CcccCCCc-CCCcCEEEEccCchh----------------------------hhHHHHHhcCCCcEEEEEEc
Confidence 98653221 367999999876521 13345678999999997653
No 78
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=99.32 E-value=1.2e-11 Score=128.88 Aligned_cols=150 Identities=22% Similarity=0.344 Sum_probs=92.2
Q ss_pred HHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---
Q 009708 326 LVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN--- 402 (528)
Q Consensus 326 l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~--- 402 (528)
.+..+++..++ .|||++||.|.+|+.+|.. ..+|+|||+++.+++.|++|++.+|++| ++++++++.++...
T Consensus 188 ~~~~~l~~~~~-~vlDlycG~G~fsl~la~~---~~~V~gvE~~~~av~~A~~Na~~N~i~n-~~f~~~~~~~~~~~~~~ 262 (352)
T PF05958_consen 188 QALEWLDLSKG-DVLDLYCGVGTFSLPLAKK---AKKVIGVEIVEEAVEDARENAKLNGIDN-VEFIRGDAEDFAKALAK 262 (352)
T ss_dssp HHHHHCTT-TT-EEEEES-TTTCCHHHHHCC---SSEEEEEES-HHHHHHHHHHHHHTT--S-EEEEE--SHHCCCHHCC
T ss_pred HHHHHhhcCCC-cEEEEeecCCHHHHHHHhh---CCeEEEeeCCHHHHHHHHHHHHHcCCCc-ceEEEeeccchhHHHHh
Confidence 34566776666 8999999999999999975 5799999999999999999999999997 99998876554221
Q ss_pred ------------CCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCc
Q 009708 403 ------------STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDP 470 (528)
Q Consensus 403 ------------~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~ 470 (528)
....+|.|++|||-+|.+- . +++.+.+ + .++||.+|....
T Consensus 263 ~r~~~~~~~~~~~~~~~d~vilDPPR~G~~~--------------~----------~~~~~~~-~---~~ivYvSCnP~t 314 (352)
T PF05958_consen 263 AREFNRLKGIDLKSFKFDAVILDPPRAGLDE--------------K----------VIELIKK-L---KRIVYVSCNPAT 314 (352)
T ss_dssp S-GGTTGGGS-GGCTTESEEEE---TT-SCH--------------H----------HHHHHHH-S---SEEEEEES-HHH
T ss_pred hHHHHhhhhhhhhhcCCCEEEEcCCCCCchH--------------H----------HHHHHhc-C---CeEEEEECCHHH
Confidence 0236899999999988553 1 1222222 2 489999996432
Q ss_pred hhhHHHHHHHHhhCCCceEecCCCCCCCccccCCceEEEcCCCCCCCceEEEEEEec
Q 009708 471 EENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARLVRA 527 (528)
Q Consensus 471 ~Ene~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~P~~~~~dGff~a~l~k~ 527 (528)
-- .-+. .|.+ ++++..+. -+-.+|+.+..+- +++|+|+
T Consensus 315 la--RDl~-~L~~--~y~~~~v~------------~~DmFP~T~HvE~--v~lL~rk 352 (352)
T PF05958_consen 315 LA--RDLK-ILKE--GYKLEKVQ------------PVDMFPQTHHVET--VALLERK 352 (352)
T ss_dssp HH--HHHH-HHHC--CEEEEEEE------------EE-SSTTSS--EE--EEEEEE-
T ss_pred HH--HHHH-HHhh--cCEEEEEE------------EeecCCCCCcEEE--EEEEEeC
Confidence 21 1122 2332 57665542 1345788777776 7778774
No 79
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.32 E-value=4.1e-11 Score=110.99 Aligned_cols=119 Identities=27% Similarity=0.322 Sum_probs=93.8
Q ss_pred CCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEE
Q 009708 332 DPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVL 411 (528)
Q Consensus 332 ~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl 411 (528)
..-.|..|+|+|||+|..++.++.+ +..+|+|+|+++++++.+++|+++++ ..+.++++|+..+. .+||.|+
T Consensus 42 g~l~g~~V~DlG~GTG~La~ga~~l--Ga~~V~~vdiD~~a~ei~r~N~~~l~--g~v~f~~~dv~~~~----~~~dtvi 113 (198)
T COG2263 42 GDLEGKTVLDLGAGTGILAIGAALL--GASRVLAVDIDPEALEIARANAEELL--GDVEFVVADVSDFR----GKFDTVI 113 (198)
T ss_pred CCcCCCEEEEcCCCcCHHHHHHHhc--CCcEEEEEecCHHHHHHHHHHHHhhC--CceEEEEcchhhcC----CccceEE
Confidence 3446778999999999999988765 45799999999999999999999944 34999999998875 5799999
Q ss_pred EcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchhhHHHHHHHHhhCC
Q 009708 412 LDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHP 485 (528)
Q Consensus 412 ~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~Ene~~v~~~l~~~~ 485 (528)
.|||. |..++++|. .+|..|++.- ..||| +|..-+.+-+..+...+.
T Consensus 114 mNPPF---G~~~rhaDr-----------------~Fl~~Ale~s----~vVYs---iH~a~~~~f~~~~~~~~G 160 (198)
T COG2263 114 MNPPF---GSQRRHADR-----------------PFLLKALEIS----DVVYS---IHKAGSRDFVEKFAADLG 160 (198)
T ss_pred ECCCC---ccccccCCH-----------------HHHHHHHHhh----heEEE---eeccccHHHHHHHHHhcC
Confidence 99998 556777763 3567777664 47774 666666667777777664
No 80
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.31 E-value=1.9e-11 Score=117.01 Aligned_cols=80 Identities=15% Similarity=0.213 Sum_probs=68.1
Q ss_pred CCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEc
Q 009708 334 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLD 413 (528)
Q Consensus 334 ~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D 413 (528)
.++.+|||+|||+|..++.++.+ ...+|+++|+++..++.+++|++.+|+.+ ++++++|+..........||+|++|
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr--~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~-v~~~~~D~~~~l~~~~~~fDlV~~D 128 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSR--YAAGATLLEMDRAVAQQLIKNLATLKAGN-ARVVNTNALSFLAQPGTPHNVVFVD 128 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHc--CCCEEEEEECCHHHHHHHHHHHHHhCCCc-EEEEEchHHHHHhhcCCCceEEEEC
Confidence 46789999999999999976554 24699999999999999999999999875 8999999987543223469999999
Q ss_pred CCC
Q 009708 414 APC 416 (528)
Q Consensus 414 ~Pc 416 (528)
||+
T Consensus 129 PPy 131 (199)
T PRK10909 129 PPF 131 (199)
T ss_pred CCC
Confidence 997
No 81
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.31 E-value=1.4e-11 Score=132.43 Aligned_cols=88 Identities=27% Similarity=0.378 Sum_probs=74.6
Q ss_pred HHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---C
Q 009708 327 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---S 403 (528)
Q Consensus 327 ~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---~ 403 (528)
+...+.+.+|++|||+|||+|..++.++.. ..+|+|+|+|+.+++.+++|++.+|+++ ++++++|+.+.... .
T Consensus 289 vl~~l~~~~~~~VLDlgcGtG~~sl~la~~---~~~V~gvD~s~~al~~A~~n~~~~~~~~-v~~~~~d~~~~l~~~~~~ 364 (443)
T PRK13168 289 ALEWLDPQPGDRVLDLFCGLGNFTLPLARQ---AAEVVGVEGVEAMVERARENARRNGLDN-VTFYHANLEEDFTDQPWA 364 (443)
T ss_pred HHHHhcCCCCCEEEEEeccCCHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEEeChHHhhhhhhhh
Confidence 344556778899999999999999999986 3689999999999999999999999976 99999999764321 1
Q ss_pred CCCCCEEEEcCCCCC
Q 009708 404 TVKCDKVLLDAPCSG 418 (528)
Q Consensus 404 ~~~fD~Vl~D~Pcsg 418 (528)
..+||+|++|||+.|
T Consensus 365 ~~~fD~Vi~dPPr~g 379 (443)
T PRK13168 365 LGGFDKVLLDPPRAG 379 (443)
T ss_pred cCCCCEEEECcCCcC
Confidence 357999999999975
No 82
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.31 E-value=1.4e-11 Score=118.44 Aligned_cols=141 Identities=21% Similarity=0.316 Sum_probs=104.5
Q ss_pred HHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccC-
Q 009708 325 GLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS- 403 (528)
Q Consensus 325 ~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~- 403 (528)
+++..++......+||++|++.|.-|+++|+.+++.++|+++|+++.+.+.+++++++.|+.++|+++.+|+.+..+..
T Consensus 35 ~lL~~l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~ 114 (205)
T PF01596_consen 35 QLLQMLVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELA 114 (205)
T ss_dssp HHHHHHHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHH
T ss_pred HHHHHHHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHH
Confidence 3333333333455999999999999999999888889999999999999999999999999989999999998764421
Q ss_pred ----CCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCc------hhh
Q 009708 404 ----TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDP------EEN 473 (528)
Q Consensus 404 ----~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~------~En 473 (528)
.++||.||+|+.-. .|...++.+.++|+|||.||.-.+-+.. .++
T Consensus 115 ~~~~~~~fD~VFiDa~K~-------------------------~y~~y~~~~~~ll~~ggvii~DN~l~~G~V~~~~~~~ 169 (205)
T PF01596_consen 115 NDGEEGQFDFVFIDADKR-------------------------NYLEYFEKALPLLRPGGVIIADNVLWRGSVADPDDED 169 (205)
T ss_dssp HTTTTTSEEEEEEESTGG-------------------------GHHHHHHHHHHHEEEEEEEEEETTTGGGGGGSTTGGS
T ss_pred hccCCCceeEEEEccccc-------------------------chhhHHHHHhhhccCCeEEEEccccccceecCccchh
Confidence 25799999998752 1344577888999999999977665331 112
Q ss_pred HH-----HHHHHHhhCCCceEe
Q 009708 474 EE-----RVEAFLLRHPEFSID 490 (528)
Q Consensus 474 e~-----~v~~~l~~~~~~~~~ 490 (528)
.. ....++..+|+|+..
T Consensus 170 ~~~~~ir~f~~~i~~d~~~~~~ 191 (205)
T PF01596_consen 170 PKTVAIREFNEYIANDPRFETV 191 (205)
T ss_dssp HHHHHHHHHHHHHHH-TTEEEE
T ss_pred hhHHHHHHHHHHHHhCCCeeEE
Confidence 22 233456667877654
No 83
>PLN02244 tocopherol O-methyltransferase
Probab=99.30 E-value=1.2e-11 Score=128.21 Aligned_cols=109 Identities=18% Similarity=0.174 Sum_probs=87.9
Q ss_pred CCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEc
Q 009708 334 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLD 413 (528)
Q Consensus 334 ~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D 413 (528)
.++.+|||+|||+|+.+..+++.. +.+|+|+|+|+.+++.++++++..|+.++++++++|+.+++. ..+.||+|++.
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~--g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~-~~~~FD~V~s~ 193 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY--GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPF-EDGQFDLVWSM 193 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCC-CCCCccEEEEC
Confidence 678899999999999999999864 469999999999999999999999987679999999987643 24689999963
Q ss_pred CCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 414 APCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 414 ~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
- .+.+-++ ...+++++.++|||||+|+++++.
T Consensus 194 ~------~~~h~~d----------------~~~~l~e~~rvLkpGG~lvi~~~~ 225 (340)
T PLN02244 194 E------SGEHMPD----------------KRKFVQELARVAAPGGRIIIVTWC 225 (340)
T ss_pred C------chhccCC----------------HHHHHHHHHHHcCCCcEEEEEEec
Confidence 1 1111111 234689999999999999987754
No 84
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.30 E-value=1.9e-11 Score=121.73 Aligned_cols=109 Identities=17% Similarity=0.270 Sum_probs=86.6
Q ss_pred CCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEc
Q 009708 334 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLD 413 (528)
Q Consensus 334 ~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D 413 (528)
.++.+|||+|||+|..+..+++. +.+|+++|+|+.+++.++++++..|+.++++++++|+.++.....++||+|++.
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~---g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~ 119 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAEL---GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFH 119 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEeh
Confidence 45679999999999999999985 468999999999999999999999987678999999987654345789999974
Q ss_pred CCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 414 APCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 414 ~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
.... | ......++..+.++|||||+|+.....
T Consensus 120 ~vl~------------~----------~~~~~~~l~~~~~~LkpgG~l~i~~~n 151 (255)
T PRK11036 120 AVLE------------W----------VADPKSVLQTLWSVLRPGGALSLMFYN 151 (255)
T ss_pred hHHH------------h----------hCCHHHHHHHHHHHcCCCeEEEEEEEC
Confidence 3220 1 011235689999999999999865444
No 85
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=99.30 E-value=1.6e-11 Score=112.81 Aligned_cols=110 Identities=27% Similarity=0.326 Sum_probs=74.5
Q ss_pred CeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCC--CCCCEEEEcC
Q 009708 337 QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNST--VKCDKVLLDA 414 (528)
Q Consensus 337 ~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~--~~fD~Vl~D~ 414 (528)
+.|+|+|||.||-++++|.. ..+|+|+|+++.+++.++.|++-+|+.++|+++++|+.+...... ..||.|+++|
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~---~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSP 77 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFART---FDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSP 77 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHT---T-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE--
T ss_pred CEEEEeccCcCHHHHHHHHh---CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECC
Confidence 37999999999999999986 458999999999999999999999998889999999998765431 2289999999
Q ss_pred CCCCCccccCC-chhhccCCHHHHHHHHHHHHHHHHHHhccCc
Q 009708 415 PCSGLGVLSKR-ADLRWNRRLEDMEELKILQDELLDAASLLVK 456 (528)
Q Consensus 415 Pcsg~G~~~~~-pd~~~~~~~~~~~~l~~~q~~lL~~a~~~Lk 456 (528)
|+.|....... -|+.....+-.+.++ ++.+.++-+
T Consensus 78 PWGGp~Y~~~~~fdL~~~~~p~~~~~l-------~~~~~~~t~ 113 (163)
T PF09445_consen 78 PWGGPSYSKKDVFDLEKSMQPFNLEDL-------LKAARKITP 113 (163)
T ss_dssp -BSSGGGGGSSSB-TTTSSSS--HHHH-------HHHHHHH-S
T ss_pred CCCCccccccCccCHHHccCCCCHHHH-------HHHHHhhCC
Confidence 99987775542 233223344445444 555555543
No 86
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=99.29 E-value=7.5e-12 Score=119.42 Aligned_cols=102 Identities=36% Similarity=0.571 Sum_probs=79.0
Q ss_pred CCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEE
Q 009708 333 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 412 (528)
Q Consensus 333 ~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~ 412 (528)
..+|+.|+|++||-|.+++.+|.. .....|+|+|++|..++.+++|++.+++++++.++++|+..+.. ...||.|++
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~-~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~--~~~~drvim 175 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKH-GKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP--EGKFDRVIM 175 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHH-T-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG-----TT-EEEEEE
T ss_pred CCcceEEEEccCCccHHHHHHhhh-cCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC--ccccCEEEE
Confidence 568999999999999999999985 34678999999999999999999999999999999999999876 478999999
Q ss_pred cCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEE
Q 009708 413 DAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463 (528)
Q Consensus 413 D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvy 463 (528)
+.|-++. ++|..+..++++||++.|
T Consensus 176 ~lp~~~~--------------------------~fl~~~~~~~~~~g~ihy 200 (200)
T PF02475_consen 176 NLPESSL--------------------------EFLDAALSLLKEGGIIHY 200 (200)
T ss_dssp --TSSGG--------------------------GGHHHHHHHEEEEEEEEE
T ss_pred CChHHHH--------------------------HHHHHHHHHhcCCcEEEC
Confidence 9997542 248889999999999876
No 87
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=99.29 E-value=6.7e-11 Score=114.73 Aligned_cols=148 Identities=18% Similarity=0.166 Sum_probs=106.8
Q ss_pred CCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccc----ccccCCCCCCEE
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT----FADNSTVKCDKV 410 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~----~~~~~~~~fD~V 410 (528)
.+..|||+|||+|..++.++..++ .++|+|+|.|+.++..+.+|++++++.+++.+++.++.. -.+...++.|++
T Consensus 148 ~~~~ildlgtGSGaIslsll~~L~-~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dll 226 (328)
T KOG2904|consen 148 KHTHILDLGTGSGAISLSLLHGLP-QCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLL 226 (328)
T ss_pred ccceEEEecCCccHHHHHHHhcCC-CceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEE
Confidence 356899999999999999999887 789999999999999999999999999999988665433 221124789999
Q ss_pred EEcCCCCCCcccc-CCchhhccCCHHHH---HHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchhhHHHHHHHHhhCC
Q 009708 411 LLDAPCSGLGVLS-KRADLRWNRRLEDM---EELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHP 485 (528)
Q Consensus 411 l~D~Pcsg~G~~~-~~pd~~~~~~~~~~---~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~Ene~~v~~~l~~~~ 485 (528)
++|||+-..--+. -+|+++-......+ .+.......++.-|.++|+|||.+++.+--. .+....|..++...+
T Consensus 227 vsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~~--~~~~~lv~~~m~s~~ 303 (328)
T KOG2904|consen 227 VSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVER--KEHSYLVRIWMISLK 303 (328)
T ss_pred ecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEeccc--ccCcHHHHHHHHhch
Confidence 9999994322111 24555433222221 1344555677889999999999999876522 334456666766543
No 88
>PTZ00146 fibrillarin; Provisional
Probab=99.29 E-value=2.9e-11 Score=121.01 Aligned_cols=107 Identities=23% Similarity=0.286 Sum_probs=80.2
Q ss_pred cCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccc--cCCCCCC
Q 009708 331 VDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD--NSTVKCD 408 (528)
Q Consensus 331 l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~--~~~~~fD 408 (528)
+.+++|++|||+|||||.++.+++..+.+.+.|+|||+++.+++.+.+.++.. +| |.++..|+..... .....||
T Consensus 128 l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r--~N-I~~I~~Da~~p~~y~~~~~~vD 204 (293)
T PTZ00146 128 IPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR--PN-IVPIIEDARYPQKYRMLVPMVD 204 (293)
T ss_pred eccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc--CC-CEEEECCccChhhhhcccCCCC
Confidence 45789999999999999999999999887889999999988776665554432 33 7788899865211 1135799
Q ss_pred EEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 409 KVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 409 ~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
+|++|... |+ ....++.++.++|||||+|+++
T Consensus 205 vV~~Dva~---------pd---------------q~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 205 VIFADVAQ---------PD---------------QARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred EEEEeCCC---------cc---------------hHHHHHHHHHHhccCCCEEEEE
Confidence 99999742 11 1122456789999999999973
No 89
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.29 E-value=4.5e-11 Score=115.53 Aligned_cols=109 Identities=28% Similarity=0.390 Sum_probs=78.3
Q ss_pred CCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccc-------ccCCC
Q 009708 333 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA-------DNSTV 405 (528)
Q Consensus 333 ~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~-------~~~~~ 405 (528)
..+|.+|||+|||||..+..+++..++.++|+|+|+++. .+..+ ++++++|+.+.. .....
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~-----------~~~~~-v~~i~~D~~~~~~~~~i~~~~~~~ 116 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM-----------DPIVG-VDFLQGDFRDELVLKALLERVGDS 116 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc-----------cCCCC-cEEEecCCCChHHHHHHHHHhCCC
Confidence 356889999999999999999998776789999999981 23444 889999998742 11246
Q ss_pred CCCEEEEcC-CCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEc
Q 009708 406 KCDKVLLDA-PCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465 (528)
Q Consensus 406 ~fD~Vl~D~-Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysT 465 (528)
.||.|++|+ |.. .|. |. .+......+...+|+.+.++|||||.++..+
T Consensus 117 ~~D~V~S~~~~~~-~g~----~~-------~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~ 165 (209)
T PRK11188 117 KVQVVMSDMAPNM-SGT----PA-------VDIPRAMYLVELALDMCRDVLAPGGSFVVKV 165 (209)
T ss_pred CCCEEecCCCCcc-CCC----hH-------HHHHHHHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 899999986 331 121 10 1112222234578999999999999999643
No 90
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.29 E-value=4e-11 Score=121.60 Aligned_cols=135 Identities=21% Similarity=0.240 Sum_probs=96.7
Q ss_pred chHHHHHHhcC--CCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccc
Q 009708 322 ESAGLVVAVVD--PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF 399 (528)
Q Consensus 322 ~~s~l~~~~l~--~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~ 399 (528)
++..++..++. ..+|.+|||+|||+|..++.++.. +..+|+|+|+++.+++.+++|+..+++.+.+.+...|....
T Consensus 144 ~tt~l~l~~l~~~~~~g~~VLDvGcGsG~lai~aa~~--g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~ 221 (288)
T TIGR00406 144 PTTSLCLEWLEDLDLKDKNVIDVGCGSGILSIAALKL--GAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQP 221 (288)
T ss_pred HHHHHHHHHHHhhcCCCCEEEEeCCChhHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccc
Confidence 34444444433 457889999999999999888764 35699999999999999999999999887677777664332
Q ss_pred cccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchhhHHHHHH
Q 009708 400 ADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEA 479 (528)
Q Consensus 400 ~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~Ene~~v~~ 479 (528)
. .++||+|++|... .. ...++..+.++|||||+|++|... . +..+.+..
T Consensus 222 ~---~~~fDlVvan~~~------------------~~-------l~~ll~~~~~~LkpgG~li~sgi~--~-~~~~~v~~ 270 (288)
T TIGR00406 222 I---EGKADVIVANILA------------------EV-------IKELYPQFSRLVKPGGWLILSGIL--E-TQAQSVCD 270 (288)
T ss_pred c---CCCceEEEEecCH------------------HH-------HHHHHHHHHHHcCCCcEEEEEeCc--H-hHHHHHHH
Confidence 2 3689999987432 11 235688999999999999987642 2 33334555
Q ss_pred HHhhCCCceEec
Q 009708 480 FLLRHPEFSIDP 491 (528)
Q Consensus 480 ~l~~~~~~~~~~ 491 (528)
.++++ |++..
T Consensus 271 ~~~~~--f~~~~ 280 (288)
T TIGR00406 271 AYEQG--FTVVE 280 (288)
T ss_pred HHHcc--Cceee
Confidence 55654 65543
No 91
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.28 E-value=4.8e-11 Score=114.31 Aligned_cols=115 Identities=19% Similarity=0.152 Sum_probs=87.8
Q ss_pred HHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccC
Q 009708 324 AGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS 403 (528)
Q Consensus 324 s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~ 403 (528)
...+...+...++.+|||+|||+|..+..+++. +.+|+|+|+|+.+++.++++++..++.+ +++++.|+..+..
T Consensus 19 ~~~l~~~l~~~~~~~vLDiGcG~G~~a~~La~~---g~~V~gvD~S~~~i~~a~~~~~~~~~~~-v~~~~~d~~~~~~-- 92 (197)
T PRK11207 19 HSEVLEAVKVVKPGKTLDLGCGNGRNSLYLAAN---GFDVTAWDKNPMSIANLERIKAAENLDN-LHTAVVDLNNLTF-- 92 (197)
T ss_pred hHHHHHhcccCCCCcEEEECCCCCHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHHHHcCCCc-ceEEecChhhCCc--
Confidence 334555666667789999999999999999975 4699999999999999999999988875 8888899876543
Q ss_pred CCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 404 TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 404 ~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
...||.|++.... .. ..+.+ ...+++.+.++|||||++++.
T Consensus 93 ~~~fD~I~~~~~~------~~-------~~~~~-------~~~~l~~i~~~LkpgG~~~~~ 133 (197)
T PRK11207 93 DGEYDFILSTVVL------MF-------LEAKT-------IPGLIANMQRCTKPGGYNLIV 133 (197)
T ss_pred CCCcCEEEEecch------hh-------CCHHH-------HHHHHHHHHHHcCCCcEEEEE
Confidence 3579999964221 10 11122 245699999999999996543
No 92
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.28 E-value=1.8e-11 Score=129.82 Aligned_cols=91 Identities=20% Similarity=0.270 Sum_probs=80.5
Q ss_pred HHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccC--
Q 009708 326 LVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS-- 403 (528)
Q Consensus 326 l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~-- 403 (528)
.+.++++..++++|||+.||.|++|+.+|.. ..+|+|+|+++.+++.|++|++.+|++| ++++.+|+..+....
T Consensus 284 ~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~---~~~V~gvEi~~~aV~~A~~NA~~n~i~N-~~f~~~~ae~~~~~~~~ 359 (432)
T COG2265 284 TALEWLELAGGERVLDLYCGVGTFGLPLAKR---VKKVHGVEISPEAVEAAQENAAANGIDN-VEFIAGDAEEFTPAWWE 359 (432)
T ss_pred HHHHHHhhcCCCEEEEeccCCChhhhhhccc---CCEEEEEecCHHHHHHHHHHHHHcCCCc-EEEEeCCHHHHhhhccc
Confidence 4556677788899999999999999999964 5799999999999999999999999998 999999999887654
Q ss_pred CCCCCEEEEcCCCCCCc
Q 009708 404 TVKCDKVLLDAPCSGLG 420 (528)
Q Consensus 404 ~~~fD~Vl~D~Pcsg~G 420 (528)
...||.|++|||-+|.+
T Consensus 360 ~~~~d~VvvDPPR~G~~ 376 (432)
T COG2265 360 GYKPDVVVVDPPRAGAD 376 (432)
T ss_pred cCCCCEEEECCCCCCCC
Confidence 35799999999998855
No 93
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.28 E-value=1.5e-11 Score=123.33 Aligned_cols=122 Identities=20% Similarity=0.305 Sum_probs=88.3
Q ss_pred hHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc
Q 009708 323 SAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN 402 (528)
Q Consensus 323 ~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~ 402 (528)
....+.+.++++||++|||+|||.|+.+..+|+.. +.+|+|+.+|+...+.+++.+++.|+.+++++...|..++.
T Consensus 50 k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~--g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~-- 125 (273)
T PF02353_consen 50 KLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERY--GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLP-- 125 (273)
T ss_dssp HHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG----
T ss_pred HHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHc--CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccC--
Confidence 34467777889999999999999999999999985 47999999999999999999999999999999999998765
Q ss_pred CCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCc
Q 009708 403 STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDP 470 (528)
Q Consensus 403 ~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~ 470 (528)
.+||.|++ .|++-+-. .+. ...+++.+.++|||||+++..+++...
T Consensus 126 --~~fD~IvS------i~~~Ehvg-------~~~-------~~~~f~~~~~~LkpgG~~~lq~i~~~~ 171 (273)
T PF02353_consen 126 --GKFDRIVS------IEMFEHVG-------RKN-------YPAFFRKISRLLKPGGRLVLQTITHRD 171 (273)
T ss_dssp ---S-SEEEE------ESEGGGTC-------GGG-------HHHHHHHHHHHSETTEEEEEEEEEE--
T ss_pred --CCCCEEEE------EechhhcC-------hhH-------HHHHHHHHHHhcCCCcEEEEEeccccc
Confidence 37999985 23322211 112 245699999999999999877665443
No 94
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=99.28 E-value=9.3e-12 Score=117.61 Aligned_cols=107 Identities=23% Similarity=0.338 Sum_probs=78.1
Q ss_pred CCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---CCCCCCEEE
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---STVKCDKVL 411 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---~~~~fD~Vl 411 (528)
+|.+|||+|||+|..++.++++ +..+|+.||.++..+..+++|++..++.+.+++++.|+...... ...+||+|+
T Consensus 42 ~g~~vLDLFaGSGalGlEALSR--GA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIf 119 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSR--GAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIF 119 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHT--T-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEE
T ss_pred CCCeEEEcCCccCccHHHHHhc--CCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEE
Confidence 5889999999999999998886 56799999999999999999999999998899999998765432 257899999
Q ss_pred EcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHH--hccCcCCCEEEEEc
Q 009708 412 LDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAA--SLLVKPGGVLVYST 465 (528)
Q Consensus 412 ~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a--~~~LkpGG~LvysT 465 (528)
+|||+.. ... ..+++... ..+|+++|.+|+-+
T Consensus 120 lDPPY~~----------------~~~------~~~~l~~l~~~~~l~~~~~ii~E~ 153 (183)
T PF03602_consen 120 LDPPYAK----------------GLY------YEELLELLAENNLLNEDGLIIIEH 153 (183)
T ss_dssp E--STTS----------------CHH------HHHHHHHHHHTTSEEEEEEEEEEE
T ss_pred ECCCccc----------------chH------HHHHHHHHHHCCCCCCCEEEEEEe
Confidence 9999931 010 12234433 38999999888543
No 95
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.28 E-value=5.5e-11 Score=119.04 Aligned_cols=139 Identities=21% Similarity=0.298 Sum_probs=99.2
Q ss_pred cchHHHHHHhcC--CCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccc
Q 009708 321 DESAGLVVAVVD--PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT 398 (528)
Q Consensus 321 d~~s~l~~~~l~--~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~ 398 (528)
.++..++..++. .++|.+|||+|||+|..++.++.+ +..+|+|+|++|.+++.+++|+++|+++..++.-..+...
T Consensus 146 HpTT~lcL~~Le~~~~~g~~vlDvGcGSGILaIAa~kL--GA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~ 223 (300)
T COG2264 146 HPTTSLCLEALEKLLKKGKTVLDVGCGSGILAIAAAKL--GAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLE 223 (300)
T ss_pred ChhHHHHHHHHHHhhcCCCEEEEecCChhHHHHHHHHc--CCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchh
Confidence 445566666654 468999999999999999998876 4678999999999999999999999998523233333322
Q ss_pred ccccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchhhHHHHH
Q 009708 399 FADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVE 478 (528)
Q Consensus 399 ~~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~Ene~~v~ 478 (528)
... .++||+|++| + ++..-..+...+..+|||||+++.|- +..+. ++.|.
T Consensus 224 ~~~--~~~~DvIVAN-----------------------I--LA~vl~~La~~~~~~lkpgg~lIlSG--Il~~q-~~~V~ 273 (300)
T COG2264 224 VPE--NGPFDVIVAN-----------------------I--LAEVLVELAPDIKRLLKPGGRLILSG--ILEDQ-AESVA 273 (300)
T ss_pred hcc--cCcccEEEeh-----------------------h--hHHHHHHHHHHHHHHcCCCceEEEEe--ehHhH-HHHHH
Confidence 222 2589999975 1 44455677899999999999999775 44444 34444
Q ss_pred HHHhhCCCceEecC
Q 009708 479 AFLLRHPEFSIDPA 492 (528)
Q Consensus 479 ~~l~~~~~~~~~~~ 492 (528)
..+.+. +|++.+.
T Consensus 274 ~a~~~~-gf~v~~~ 286 (300)
T COG2264 274 EAYEQA-GFEVVEV 286 (300)
T ss_pred HHHHhC-CCeEeEE
Confidence 444332 4666553
No 96
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.28 E-value=2.9e-11 Score=129.58 Aligned_cols=88 Identities=22% Similarity=0.284 Sum_probs=74.0
Q ss_pred HHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---C
Q 009708 327 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---S 403 (528)
Q Consensus 327 ~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---~ 403 (528)
+...+.+.++++|||+|||+|..++.+|.. ..+|+|+|+++.+++.+++|++.+|+++ ++++++|+...... .
T Consensus 284 ~~~~l~~~~~~~vLDl~cG~G~~sl~la~~---~~~V~~vE~~~~av~~a~~n~~~~~~~n-v~~~~~d~~~~l~~~~~~ 359 (431)
T TIGR00479 284 ALEALELQGEELVVDAYCGVGTFTLPLAKQ---AKSVVGIEVVPESVEKAQQNAELNGIAN-VEFLAGTLETVLPKQPWA 359 (431)
T ss_pred HHHHhccCCCCEEEEcCCCcCHHHHHHHHh---CCEEEEEEcCHHHHHHHHHHHHHhCCCc-eEEEeCCHHHHHHHHHhc
Confidence 344556677889999999999999999975 3589999999999999999999999875 99999999765322 1
Q ss_pred CCCCCEEEEcCCCCC
Q 009708 404 TVKCDKVLLDAPCSG 418 (528)
Q Consensus 404 ~~~fD~Vl~D~Pcsg 418 (528)
...||+|++|||..|
T Consensus 360 ~~~~D~vi~dPPr~G 374 (431)
T TIGR00479 360 GQIPDVLLLDPPRKG 374 (431)
T ss_pred CCCCCEEEECcCCCC
Confidence 346999999999865
No 97
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.27 E-value=1.2e-11 Score=119.00 Aligned_cols=109 Identities=27% Similarity=0.273 Sum_probs=87.8
Q ss_pred CCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEc
Q 009708 334 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLD 413 (528)
Q Consensus 334 ~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D 413 (528)
-+|.+|||+|||-|..+..||+. +..|+|+|+++..++.++..+...|+. ++..+....++... .++||+|+|-
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~---Ga~VtgiD~se~~I~~Ak~ha~e~gv~--i~y~~~~~edl~~~-~~~FDvV~cm 131 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARL---GASVTGIDASEKPIEVAKLHALESGVN--IDYRQATVEDLASA-GGQFDVVTCM 131 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHC---CCeeEEecCChHHHHHHHHhhhhcccc--ccchhhhHHHHHhc-CCCccEEEEh
Confidence 36889999999999999999986 489999999999999999999999986 66777777776643 3799999962
Q ss_pred CCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCc
Q 009708 414 APCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDP 470 (528)
Q Consensus 414 ~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~ 470 (528)
+-++++ ..-..+++.+.+++||||.++.||-.-+.
T Consensus 132 ---------------------EVlEHv-~dp~~~~~~c~~lvkP~G~lf~STinrt~ 166 (243)
T COG2227 132 ---------------------EVLEHV-PDPESFLRACAKLVKPGGILFLSTINRTL 166 (243)
T ss_pred ---------------------hHHHcc-CCHHHHHHHHHHHcCCCcEEEEeccccCH
Confidence 222222 22345899999999999999999976443
No 98
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=99.26 E-value=3.8e-11 Score=125.55 Aligned_cols=78 Identities=17% Similarity=0.286 Sum_probs=66.8
Q ss_pred CeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccC-------------
Q 009708 337 QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS------------- 403 (528)
Q Consensus 337 ~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~------------- 403 (528)
.+|||+|||+|.+++.++.. ..+|+|+|+++.+++.+++|++.+|+++ ++++++|+.++....
T Consensus 208 ~~vLDl~~G~G~~sl~la~~---~~~v~~vE~~~~ai~~a~~N~~~~~~~~-v~~~~~d~~~~l~~~~~~~~~~~~~~~~ 283 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARN---FRRVLATEISKPSVAAAQYNIAANGIDN-VQIIRMSAEEFTQAMNGVREFNRLKGID 283 (362)
T ss_pred CeEEEEeccccHHHHHHHhh---CCEEEEEECCHHHHHHHHHHHHHhCCCc-EEEEECCHHHHHHHHhhccccccccccc
Confidence 57999999999999988875 3589999999999999999999999985 999999998754321
Q ss_pred --CCCCCEEEEcCCCCC
Q 009708 404 --TVKCDKVLLDAPCSG 418 (528)
Q Consensus 404 --~~~fD~Vl~D~Pcsg 418 (528)
..+||+|++|||.+|
T Consensus 284 ~~~~~~D~v~lDPPR~G 300 (362)
T PRK05031 284 LKSYNFSTIFVDPPRAG 300 (362)
T ss_pred ccCCCCCEEEECCCCCC
Confidence 125899999999865
No 99
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.26 E-value=4.8e-11 Score=114.15 Aligned_cols=114 Identities=17% Similarity=0.136 Sum_probs=84.8
Q ss_pred HHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCC
Q 009708 325 GLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNST 404 (528)
Q Consensus 325 ~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~ 404 (528)
..+...+...++.+|||+|||+|..+..++++ +.+|+|+|+|+.+++.++++++..|++ +.+...|+..... .
T Consensus 20 ~~l~~~~~~~~~~~vLDiGcG~G~~a~~la~~---g~~V~~iD~s~~~l~~a~~~~~~~~~~--v~~~~~d~~~~~~--~ 92 (195)
T TIGR00477 20 SAVREAVKTVAPCKTLDLGCGQGRNSLYLSLA---GYDVRAWDHNPASIASVLDMKARENLP--LRTDAYDINAAAL--N 92 (195)
T ss_pred HHHHHHhccCCCCcEEEeCCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHHhCCC--ceeEeccchhccc--c
Confidence 34445566656679999999999999999975 469999999999999999999888875 6677777754332 3
Q ss_pred CCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEc
Q 009708 405 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465 (528)
Q Consensus 405 ~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysT 465 (528)
.+||.|++..+... .+..+ ...+++.+.++|||||++++.+
T Consensus 93 ~~fD~I~~~~~~~~-------------~~~~~-------~~~~l~~~~~~LkpgG~lli~~ 133 (195)
T TIGR00477 93 EDYDFIFSTVVFMF-------------LQAGR-------VPEIIANMQAHTRPGGYNLIVA 133 (195)
T ss_pred CCCCEEEEeccccc-------------CCHHH-------HHHHHHHHHHHhCCCcEEEEEE
Confidence 57999997554311 11122 2346999999999999966543
No 100
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.25 E-value=5.2e-11 Score=123.76 Aligned_cols=122 Identities=19% Similarity=0.355 Sum_probs=97.5
Q ss_pred hcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc-CCCCCC
Q 009708 330 VVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVKCD 408 (528)
Q Consensus 330 ~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~-~~~~fD 408 (528)
.+....+..+||+|||+|..++++|... +...++|+|+++.++..+.+++...|++| +.++++|+..+... ..+.+|
T Consensus 117 ~~~~~~~p~vLEIGcGsG~~ll~lA~~~-P~~~~iGIEI~~~~i~~a~~ka~~~gL~N-V~~i~~DA~~ll~~~~~~s~D 194 (390)
T PRK14121 117 FISKNQEKILIEIGFGSGRHLLYQAKNN-PNKLFIGIEIHTPSIEQVLKQIELLNLKN-LLIINYDARLLLELLPSNSVE 194 (390)
T ss_pred HhcCCCCCeEEEEcCcccHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCCc-EEEEECCHHHhhhhCCCCcee
Confidence 3344567799999999999999999984 56899999999999999999999999987 99999999765322 247899
Q ss_pred EEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCC
Q 009708 409 KVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSID 469 (528)
Q Consensus 409 ~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~ 469 (528)
.|++..|+ .|..... .++ .+..+|+.+.++|+|||.+.+.|.+..
T Consensus 195 ~I~lnFPd------------PW~KkrH--RRl--v~~~fL~e~~RvLkpGG~l~l~TD~~~ 239 (390)
T PRK14121 195 KIFVHFPV------------PWDKKPH--RRV--ISEDFLNEALRVLKPGGTLELRTDSEL 239 (390)
T ss_pred EEEEeCCC------------Cccccch--hhc--cHHHHHHHHHHHcCCCcEEEEEEECHH
Confidence 99998766 2322211 122 367889999999999999999987643
No 101
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.25 E-value=1.1e-10 Score=117.34 Aligned_cols=112 Identities=16% Similarity=0.283 Sum_probs=89.3
Q ss_pred cCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEE
Q 009708 331 VDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKV 410 (528)
Q Consensus 331 l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~V 410 (528)
..+.+|++|||+|||+|..++.++..++..++|+++|+++.+++.++++.+..++++ ++++.+|+..++. ..+.||+|
T Consensus 73 ~~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~-v~~~~~d~~~l~~-~~~~fD~V 150 (272)
T PRK11873 73 AELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTN-VEFRLGEIEALPV-ADNSVDVI 150 (272)
T ss_pred ccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCC-EEEEEcchhhCCC-CCCceeEE
Confidence 456789999999999999888888877666799999999999999999999999874 8899999877543 23589999
Q ss_pred EEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcC
Q 009708 411 LLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTC 466 (528)
Q Consensus 411 l~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTc 466 (528)
+++.-. ...|+ ...++++++++|||||+|++++-
T Consensus 151 i~~~v~------~~~~d----------------~~~~l~~~~r~LkpGG~l~i~~~ 184 (272)
T PRK11873 151 ISNCVI------NLSPD----------------KERVFKEAFRVLKPGGRFAISDV 184 (272)
T ss_pred EEcCcc------cCCCC----------------HHHHHHHHHHHcCCCcEEEEEEe
Confidence 976321 11111 12468999999999999998653
No 102
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.25 E-value=1.2e-10 Score=110.58 Aligned_cols=111 Identities=27% Similarity=0.390 Sum_probs=79.6
Q ss_pred cCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccc-------ccC
Q 009708 331 VDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA-------DNS 403 (528)
Q Consensus 331 l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~-------~~~ 403 (528)
..+++|++|||+|||+|+.+..++....+.++|+++|+++.+ +..+ ++++++|+.+.. ...
T Consensus 28 ~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~~~-i~~~~~d~~~~~~~~~l~~~~~ 95 (188)
T TIGR00438 28 KLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PIEN-VDFIRGDFTDEEVLNKIRERVG 95 (188)
T ss_pred cccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cCCC-ceEEEeeCCChhHHHHHHHHhC
Confidence 345789999999999999999999887666799999999864 2233 678888876532 012
Q ss_pred CCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 404 TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 404 ~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
.++||+|++|+++...|. |.. .... -...+..++..+.++|+|||++++.
T Consensus 96 ~~~~D~V~~~~~~~~~g~--------~~~--~~~~-~~~~~~~~l~~~~~~LkpgG~lvi~ 145 (188)
T TIGR00438 96 DDKVDVVMSDAAPNISGY--------WDI--DHLR-SIDLVELALDIAKEVLKPKGNFVVK 145 (188)
T ss_pred CCCccEEEcCCCCCCCCC--------ccc--cHHH-HHHHHHHHHHHHHHHccCCCEEEEE
Confidence 357999999975433333 111 1111 1234677899999999999999975
No 103
>PLN02672 methionine S-methyltransferase
Probab=99.25 E-value=5.3e-11 Score=137.24 Aligned_cols=149 Identities=14% Similarity=0.208 Sum_probs=106.8
Q ss_pred CCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCC---------------ccEEEEcCcccccc
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVN---------------SVIRTIHADLRTFA 400 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~---------------~~i~~~~~D~~~~~ 400 (528)
+.+|||+|||+|..++.++...+ ..+|+|+|+|+.+++.+++|+++++++ ++++++++|+....
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~-~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~ 197 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWL-PSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYC 197 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhc
Confidence 46899999999999999998753 469999999999999999999987642 36899999998755
Q ss_pred ccCCCCCCEEEEcCCCCCCccccC-Cchhh--------cc----CCHHHH---HHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 401 DNSTVKCDKVLLDAPCSGLGVLSK-RADLR--------WN----RRLEDM---EELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 401 ~~~~~~fD~Vl~D~Pcsg~G~~~~-~pd~~--------~~----~~~~~~---~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
.....+||+|++|||+-..+-+.. .|+++ +. .-.... ......+++++..+.++|+|||.++
T Consensus 198 ~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~-- 275 (1082)
T PLN02672 198 RDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMI-- 275 (1082)
T ss_pred cccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEE--
Confidence 322236999999999965553221 22332 10 000011 3456778999999999999999998
Q ss_pred cCCCCchhhHHHHHHHHhhCCCceE
Q 009708 465 TCSIDPEENEERVEAFLLRHPEFSI 489 (528)
Q Consensus 465 Tcs~~~~Ene~~v~~~l~~~~~~~~ 489 (528)
|-+.....+.+.+.++.+. +|..
T Consensus 276 -lEiG~~q~~~v~~~l~~~~-gf~~ 298 (1082)
T PLN02672 276 -FNMGGRPGQAVCERLFERR-GFRI 298 (1082)
T ss_pred -EEECccHHHHHHHHHHHHC-CCCe
Confidence 4555555555553566653 3444
No 104
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=99.24 E-value=6.6e-11 Score=110.56 Aligned_cols=108 Identities=24% Similarity=0.294 Sum_probs=85.1
Q ss_pred CCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCC--CCCEEE
Q 009708 334 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTV--KCDKVL 411 (528)
Q Consensus 334 ~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~--~fD~Vl 411 (528)
-.|.+|||++||+|+.++.++++ +..+++.||.|...+..+++|++.+++...++++..|+..+...... .||+|+
T Consensus 42 i~g~~~LDlFAGSGaLGlEAlSR--GA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVf 119 (187)
T COG0742 42 IEGARVLDLFAGSGALGLEALSR--GAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVF 119 (187)
T ss_pred cCCCEEEEecCCccHhHHHHHhC--CCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEE
Confidence 35889999999999999999986 56799999999999999999999999887899999999866544434 499999
Q ss_pred EcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHH-HHHHhccCcCCCEEEE
Q 009708 412 LDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDEL-LDAASLLVKPGGVLVY 463 (528)
Q Consensus 412 ~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~l-L~~a~~~LkpGG~Lvy 463 (528)
+|||+- .|+ ...+..+ +-.-..+|+|+|.+|.
T Consensus 120 lDPPy~-~~l-------------------~~~~~~~~~~~~~~~L~~~~~iv~ 152 (187)
T COG0742 120 LDPPYA-KGL-------------------LDKELALLLLEENGWLKPGALIVV 152 (187)
T ss_pred eCCCCc-cch-------------------hhHHHHHHHHHhcCCcCCCcEEEE
Confidence 999993 222 1111111 2234678999998884
No 105
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=99.23 E-value=8.8e-11 Score=122.34 Aligned_cols=78 Identities=17% Similarity=0.342 Sum_probs=66.7
Q ss_pred CeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccC-------------
Q 009708 337 QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS------------- 403 (528)
Q Consensus 337 ~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~------------- 403 (528)
.+|||+|||+|.+++.++.. ..+|+|+|+++.+++.+++|++.+|+++ ++++++|+.++....
T Consensus 199 ~~vlDl~~G~G~~sl~la~~---~~~v~~vE~~~~av~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~~~~~~~~ 274 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQN---FRRVLATEIAKPSVNAAQYNIAANNIDN-VQIIRMSAEEFTQAMNGVREFRRLKGID 274 (353)
T ss_pred CcEEEEeccccHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHHHcCCCc-EEEEEcCHHHHHHHHhhccccccccccc
Confidence 47999999999999999876 3589999999999999999999999986 999999998755321
Q ss_pred --CCCCCEEEEcCCCCC
Q 009708 404 --TVKCDKVLLDAPCSG 418 (528)
Q Consensus 404 --~~~fD~Vl~D~Pcsg 418 (528)
...||.|++|||-+|
T Consensus 275 ~~~~~~d~v~lDPPR~G 291 (353)
T TIGR02143 275 LKSYNCSTIFVDPPRAG 291 (353)
T ss_pred cccCCCCEEEECCCCCC
Confidence 124899999999765
No 106
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.23 E-value=1.1e-10 Score=119.66 Aligned_cols=109 Identities=13% Similarity=0.205 Sum_probs=86.9
Q ss_pred HHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCC
Q 009708 326 LVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTV 405 (528)
Q Consensus 326 l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~ 405 (528)
.+...++++++++|||+|||+|..+..+++..+..+.|+++|+++.+++.++++++.+|+++ +.++++|+....... .
T Consensus 71 ~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~n-V~~i~gD~~~~~~~~-~ 148 (322)
T PRK13943 71 LFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIEN-VIFVCGDGYYGVPEF-A 148 (322)
T ss_pred HHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCc-EEEEeCChhhccccc-C
Confidence 44556678889999999999999999999986655789999999999999999999999975 889999987654332 5
Q ss_pred CCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 406 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 406 ~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
.||+|+++... .. +...+.+.|+|||+++..
T Consensus 149 ~fD~Ii~~~g~------------------~~----------ip~~~~~~LkpgG~Lvv~ 179 (322)
T PRK13943 149 PYDVIFVTVGV------------------DE----------VPETWFTQLKEGGRVIVP 179 (322)
T ss_pred CccEEEECCch------------------HH----------hHHHHHHhcCCCCEEEEE
Confidence 69999986432 01 123356789999998864
No 107
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.22 E-value=1.1e-10 Score=115.95 Aligned_cols=112 Identities=22% Similarity=0.242 Sum_probs=87.3
Q ss_pred CCCCCeEEEeCCccchHHHHHHHHc-CCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEE
Q 009708 333 PQPGQSIVDCCAAPGGKTLYMASCL-SGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVL 411 (528)
Q Consensus 333 ~~~g~~VLDl~aG~G~kt~~la~~~-~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl 411 (528)
+.++.+|||+|||+|..+..+++.+ .+.++|+|+|+|+.+++.+++++...+..++++++++|+..++. ..+|.|+
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~---~~~D~vv 130 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI---ENASMVV 130 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCC---CCCCEEe
Confidence 3467899999999999999888754 35689999999999999999999998887679999999987643 3589888
Q ss_pred EcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 412 LDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 412 ~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
+...- .. ... ..+..+++++.+.|||||.|++++..
T Consensus 131 ~~~~l------~~-------l~~-------~~~~~~l~~i~~~LkpGG~l~l~e~~ 166 (247)
T PRK15451 131 LNFTL------QF-------LEP-------SERQALLDKIYQGLNPGGALVLSEKF 166 (247)
T ss_pred hhhHH------Hh-------CCH-------HHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 53111 00 011 11345799999999999999988743
No 108
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.22 E-value=6.5e-11 Score=121.32 Aligned_cols=109 Identities=25% Similarity=0.255 Sum_probs=84.8
Q ss_pred CCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEE
Q 009708 333 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 412 (528)
Q Consensus 333 ~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~ 412 (528)
+.+|.+|||+|||+|..+..+++. +.+|+|+|.++.+++.++.++...+...+++++++|+.++.. ..++||+|++
T Consensus 129 ~~~g~~ILDIGCG~G~~s~~La~~---g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~-~~~~FD~Vi~ 204 (322)
T PLN02396 129 PFEGLKFIDIGCGGGLLSEPLARM---GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLAD-EGRKFDAVLS 204 (322)
T ss_pred CCCCCEEEEeeCCCCHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhh-ccCCCCEEEE
Confidence 456789999999999999988863 569999999999999999988776654458999999987653 2468999996
Q ss_pred cCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 413 DAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 413 D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
- +++.+ ......+|+.+.++|||||.++++|-.
T Consensus 205 ~------~vLeH----------------v~d~~~~L~~l~r~LkPGG~liist~n 237 (322)
T PLN02396 205 L------EVIEH----------------VANPAEFCKSLSALTIPNGATVLSTIN 237 (322)
T ss_pred h------hHHHh----------------cCCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 2 12111 111245799999999999999988643
No 109
>PHA03411 putative methyltransferase; Provisional
Probab=99.22 E-value=2.5e-10 Score=113.09 Aligned_cols=148 Identities=14% Similarity=0.189 Sum_probs=96.6
Q ss_pred CCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEE
Q 009708 332 DPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVL 411 (528)
Q Consensus 332 ~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl 411 (528)
.+.++.+|||+|||+|..++.++.+.. ..+|+++|+++.+++.+++++ + .++++++|+..+.. ..+||.|+
T Consensus 61 ~~~~~grVLDLGcGsGilsl~la~r~~-~~~V~gVDisp~al~~Ar~n~-----~-~v~~v~~D~~e~~~--~~kFDlII 131 (279)
T PHA03411 61 DAHCTGKVLDLCAGIGRLSFCMLHRCK-PEKIVCVELNPEFARIGKRLL-----P-EAEWITSDVFEFES--NEKFDVVI 131 (279)
T ss_pred ccccCCeEEEcCCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhC-----c-CCEEEECchhhhcc--cCCCcEEE
Confidence 445567999999999999998887632 469999999999999998863 2 37889999988653 36799999
Q ss_pred EcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEE--EEcCCC-CchhhHHHHHHHHhhCCCce
Q 009708 412 LDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLV--YSTCSI-DPEENEERVEAFLLRHPEFS 488 (528)
Q Consensus 412 ~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lv--ysTcs~-~~~Ene~~v~~~l~~~~~~~ 488 (528)
+|||+.....-.+.....|.-.......+ .-.+++.....+|+|+|.+. |+.-.+ |..-..+....+|+.+ +|+
T Consensus 132 sNPPF~~l~~~d~~~~~~~~GG~~g~~~l--~~~~~l~~v~~~L~p~G~~~~~yss~~~y~~sl~~~~y~~~l~~~-g~~ 208 (279)
T PHA03411 132 SNPPFGKINTTDTKDVFEYTGGEFEFKVM--TLGQKFADVGYFIVPTGSAGFAYSGRPYYDGTMKSNKYLKWSKQT-GLV 208 (279)
T ss_pred EcCCccccCchhhhhhhhhccCccccccc--cHHHHHhhhHheecCCceEEEEEeccccccccCCHHHHHHHHHhc-CcE
Confidence 99999643332222111111000000000 01456888899999999754 554332 3333445566777775 455
Q ss_pred Eec
Q 009708 489 IDP 491 (528)
Q Consensus 489 ~~~ 491 (528)
..+
T Consensus 209 ~~~ 211 (279)
T PHA03411 209 TYA 211 (279)
T ss_pred ecC
Confidence 544
No 110
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.22 E-value=4.5e-11 Score=120.64 Aligned_cols=134 Identities=25% Similarity=0.308 Sum_probs=92.9
Q ss_pred cchHHHHHHhcC--CCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccc
Q 009708 321 DESAGLVVAVVD--PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT 398 (528)
Q Consensus 321 d~~s~l~~~~l~--~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~ 398 (528)
.++.+++..++. ..+|.+|||+|||+|..++.++.+ +..+|+|+|++|.+++.+++|++.+|+.+++.+. ...+
T Consensus 145 H~TT~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~kl--GA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~~~~ 220 (295)
T PF06325_consen 145 HPTTRLCLELLEKYVKPGKRVLDVGCGSGILAIAAAKL--GAKKVVAIDIDPLAVEAARENAELNGVEDRIEVS--LSED 220 (295)
T ss_dssp CHHHHHHHHHHHHHSSTTSEEEEES-TTSHHHHHHHHT--TBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--CTSC
T ss_pred CHHHHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHc--CCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--Eecc
Confidence 445566665543 467899999999999999988875 4679999999999999999999999999866553 1112
Q ss_pred ccccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchhhHHHHH
Q 009708 399 FADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVE 478 (528)
Q Consensus 399 ~~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~Ene~~v~ 478 (528)
.. ..+||+|++|-- +.....++....++|+|||+|+.|- +..++.+.+.
T Consensus 221 ~~---~~~~dlvvANI~-------------------------~~vL~~l~~~~~~~l~~~G~lIlSG--Il~~~~~~v~- 269 (295)
T PF06325_consen 221 LV---EGKFDLVVANIL-------------------------ADVLLELAPDIASLLKPGGYLILSG--ILEEQEDEVI- 269 (295)
T ss_dssp TC---CS-EEEEEEES--------------------------HHHHHHHHHHCHHHEEEEEEEEEEE--EEGGGHHHHH-
T ss_pred cc---cccCCEEEECCC-------------------------HHHHHHHHHHHHHhhCCCCEEEEcc--ccHHHHHHHH-
Confidence 11 268999998621 1223446778889999999999542 3344444454
Q ss_pred HHHhhCCCceEec
Q 009708 479 AFLLRHPEFSIDP 491 (528)
Q Consensus 479 ~~l~~~~~~~~~~ 491 (528)
..+++ +|++..
T Consensus 270 ~a~~~--g~~~~~ 280 (295)
T PF06325_consen 270 EAYKQ--GFELVE 280 (295)
T ss_dssp HHHHT--TEEEEE
T ss_pred HHHHC--CCEEEE
Confidence 44453 777654
No 111
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.21 E-value=9.6e-11 Score=111.45 Aligned_cols=81 Identities=15% Similarity=0.120 Sum_probs=69.2
Q ss_pred CCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccC---CCCCCEEE
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS---TVKCDKVL 411 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~---~~~fD~Vl 411 (528)
+|.+|||+|||+|..++.++.+ +..+|++||+++..++.+++|++.+++.++++++++|+..+.... ...||+|+
T Consensus 49 ~g~~vLDLfaGsG~lglea~sr--ga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~ 126 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSR--GAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIY 126 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEE
Confidence 4789999999999999999986 345899999999999999999999999766899999997654321 22489999
Q ss_pred EcCCCC
Q 009708 412 LDAPCS 417 (528)
Q Consensus 412 ~D~Pcs 417 (528)
+|||+.
T Consensus 127 ~DPPy~ 132 (189)
T TIGR00095 127 LDPPFF 132 (189)
T ss_pred ECcCCC
Confidence 999994
No 112
>PHA03412 putative methyltransferase; Provisional
Probab=99.20 E-value=5e-11 Score=115.51 Aligned_cols=151 Identities=17% Similarity=0.188 Sum_probs=99.6
Q ss_pred cceeEeecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcC--CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEE
Q 009708 314 EGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLS--GQGLVYAIDINKGRLRILNETAKLHQVNSVIRT 391 (528)
Q Consensus 314 ~G~~~~Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~--~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~ 391 (528)
.|.|+.....+..++. ....+.+|||+|||+|.+++.+++.+. +...|+|+|+++.+++.+++|.. .+.+
T Consensus 30 ~GqFfTP~~iAr~~~i--~~~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~------~~~~ 101 (241)
T PHA03412 30 LGAFFTPIGLARDFTI--DACTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP------EATW 101 (241)
T ss_pred CCccCCCHHHHHHHHH--hccCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc------CCEE
Confidence 4555554443333331 122367999999999999999998653 34689999999999999998753 2678
Q ss_pred EcCccccccccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEE--------E
Q 009708 392 IHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLV--------Y 463 (528)
Q Consensus 392 ~~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lv--------y 463 (528)
+++|+..... ..+||+|++|||+.-... .+. .. ...-......++..|.+++++|+.|+ |
T Consensus 102 ~~~D~~~~~~--~~~FDlIIsNPPY~~~~~--~d~--~a------r~~g~~~~~~li~~A~~Ll~~G~~ILP~~~~~~~y 169 (241)
T PHA03412 102 INADALTTEF--DTLFDMAISNPPFGKIKT--SDF--KG------KYTGAEFEYKVIERASQIARQGTFIIPQMSANFRY 169 (241)
T ss_pred EEcchhcccc--cCCccEEEECCCCCCccc--ccc--CC------cccccHHHHHHHHHHHHHcCCCEEEeCcccccCcc
Confidence 8999976542 358999999999964331 111 00 01112345568999999888877655 6
Q ss_pred EcCCCCc-hhh--HHHHHHHHhhC
Q 009708 464 STCSIDP-EEN--EERVEAFLLRH 484 (528)
Q Consensus 464 sTcs~~~-~En--e~~v~~~l~~~ 484 (528)
|-|-... .++ -..+.+|+++.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~ 193 (241)
T PHA03412 170 SGTHYFRQDESTTSSKCKKFLDET 193 (241)
T ss_pred cCccceeeccCcccHHHHHHHHhc
Confidence 6666552 222 23455666653
No 113
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.20 E-value=2.8e-10 Score=113.10 Aligned_cols=119 Identities=25% Similarity=0.317 Sum_probs=85.4
Q ss_pred CCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEE
Q 009708 333 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 412 (528)
Q Consensus 333 ~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~ 412 (528)
..++.+|||+|||+|..++.++.. + ..+|+|+|+|+.+++.+++|++.+++...+.+..+|. +||+|++
T Consensus 117 ~~~~~~VLDiGcGsG~l~i~~~~~-g-~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~---------~fD~Vva 185 (250)
T PRK00517 117 VLPGKTVLDVGCGSGILAIAAAKL-G-AKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGDL---------KADVIVA 185 (250)
T ss_pred cCCCCEEEEeCCcHHHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCC---------CcCEEEE
Confidence 457889999999999988877653 3 4579999999999999999999998854455444332 6999998
Q ss_pred cCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchhhHHHHHHHHhhCCCceEec
Q 009708 413 DAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDP 491 (528)
Q Consensus 413 D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~Ene~~v~~~l~~~~~~~~~~ 491 (528)
+... . ....++..+.++|||||+++++.... +..+.+...+.++ +|++..
T Consensus 186 ni~~------------------~-------~~~~l~~~~~~~LkpgG~lilsgi~~---~~~~~v~~~l~~~-Gf~~~~ 235 (250)
T PRK00517 186 NILA------------------N-------PLLELAPDLARLLKPGGRLILSGILE---EQADEVLEAYEEA-GFTLDE 235 (250)
T ss_pred cCcH------------------H-------HHHHHHHHHHHhcCCCcEEEEEECcH---hhHHHHHHHHHHC-CCEEEE
Confidence 6321 1 12456889999999999999875432 2333444555554 465543
No 114
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.20 E-value=4.5e-10 Score=114.69 Aligned_cols=116 Identities=22% Similarity=0.188 Sum_probs=83.2
Q ss_pred HHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCC
Q 009708 328 VAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKC 407 (528)
Q Consensus 328 ~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~f 407 (528)
...+.+.+|.+|||+|||+|..+..++.. +...|+|+|.|+.++..++...+..+....+.+...|+.+++.. ..|
T Consensus 114 l~~l~~~~g~~VLDvGCG~G~~~~~~~~~--g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~--~~F 189 (314)
T TIGR00452 114 LPHLSPLKGRTILDVGCGSGYHMWRMLGH--GAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL--YAF 189 (314)
T ss_pred HHhcCCCCCCEEEEeccCCcHHHHHHHHc--CCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC--CCc
Confidence 33456677899999999999999888865 34589999999999877654444333334577888888776542 479
Q ss_pred CEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCC
Q 009708 408 DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSID 469 (528)
Q Consensus 408 D~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~ 469 (528)
|.|++. |++-+.+ ++ ...|+++.+.|||||.||+.|..+.
T Consensus 190 D~V~s~------gvL~H~~------dp----------~~~L~el~r~LkpGG~Lvletl~i~ 229 (314)
T TIGR00452 190 DTVFSM------GVLYHRK------SP----------LEHLKQLKHQLVIKGELVLETLVID 229 (314)
T ss_pred CEEEEc------chhhccC------CH----------HHHHHHHHHhcCCCCEEEEEEEEec
Confidence 999962 3332221 11 2358999999999999998876544
No 115
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.19 E-value=1.1e-10 Score=106.86 Aligned_cols=120 Identities=23% Similarity=0.305 Sum_probs=91.1
Q ss_pred CeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEE----E
Q 009708 337 QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVL----L 412 (528)
Q Consensus 337 ~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl----~ 412 (528)
++|||+|||.|.....+++. +=.+.++++|.|+.+++.|+..+++.|++|.|++.+.|++.. ....++||+|+ .
T Consensus 69 ~~VlDLGtGNG~~L~~L~~e-gf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~-~~~~~qfdlvlDKGT~ 146 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKE-GFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDP-DFLSGQFDLVLDKGTL 146 (227)
T ss_pred cceeeccCCchHHHHHHHHh-cCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCC-cccccceeEEeecCce
Confidence 48999999999999999885 335679999999999999999999999999899999999885 33457889886 2
Q ss_pred cCCC-CCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchhhHHHH
Q 009708 413 DAPC-SGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERV 477 (528)
Q Consensus 413 D~Pc-sg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~Ene~~v 477 (528)
|+-. |+.+...|. .-.+...-++|+|||++|+.+|.+...|-.+.+
T Consensus 147 DAisLs~d~~~~r~-------------------~~Y~d~v~~ll~~~gifvItSCN~T~dELv~~f 193 (227)
T KOG1271|consen 147 DAISLSPDGPVGRL-------------------VVYLDSVEKLLSPGGIFVITSCNFTKDELVEEF 193 (227)
T ss_pred eeeecCCCCcccce-------------------eeehhhHhhccCCCcEEEEEecCccHHHHHHHH
Confidence 2221 222221110 112666778899999999999999887654443
No 116
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=99.17 E-value=2e-10 Score=120.43 Aligned_cols=114 Identities=25% Similarity=0.338 Sum_probs=88.2
Q ss_pred HHHHHHhcCCC-CCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc
Q 009708 324 AGLVVAVVDPQ-PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN 402 (528)
Q Consensus 324 s~l~~~~l~~~-~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~ 402 (528)
+.+++..+... ++.+|||++||+|..++.++...+ ..+|+++|+++..++.+++|++.+++++ ++++++|+..+...
T Consensus 45 ~~~v~~~~~~~~~~~~vLDl~aGsG~~~l~~a~~~~-~~~V~a~Din~~Av~~a~~N~~~N~~~~-~~v~~~Da~~~l~~ 122 (382)
T PRK04338 45 SVLVLRAFGPKLPRESVLDALSASGIRGIRYALETG-VEKVTLNDINPDAVELIKKNLELNGLEN-EKVFNKDANALLHE 122 (382)
T ss_pred HHHHHHHHHhhcCCCEEEECCCcccHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCc-eEEEhhhHHHHHhh
Confidence 33444444433 457899999999999999988643 4589999999999999999999999986 77999999776532
Q ss_pred CCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 403 STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 403 ~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
..+||+|++||| |++. .+++.|...+++||.|.++ |+
T Consensus 123 -~~~fD~V~lDP~--Gs~~------------------------~~l~~al~~~~~~gilyvS-At 159 (382)
T PRK04338 123 -ERKFDVVDIDPF--GSPA------------------------PFLDSAIRSVKRGGLLCVT-AT 159 (382)
T ss_pred -cCCCCEEEECCC--CCcH------------------------HHHHHHHHHhcCCCEEEEE-ec
Confidence 357999999998 3221 3578888889998865544 54
No 117
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=99.17 E-value=3.1e-10 Score=111.97 Aligned_cols=121 Identities=18% Similarity=0.138 Sum_probs=98.5
Q ss_pred chHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccc
Q 009708 322 ESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD 401 (528)
Q Consensus 322 ~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~ 401 (528)
...+++..++......+||++|++.|.-|+++|..++..++|+++|.++...+.+++++++.|+.++|+++.+|+.+..+
T Consensus 66 ~~g~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~ 145 (247)
T PLN02589 66 DEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLD 145 (247)
T ss_pred HHHHHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHH
Confidence 34455555555555669999999999999999998877899999999999999999999999999899999999988654
Q ss_pred cC------CCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 402 NS------TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 402 ~~------~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
.. .++||.||+|+-- ..+...++.+.++|+|||.||.-.+-
T Consensus 146 ~l~~~~~~~~~fD~iFiDadK-------------------------~~Y~~y~~~~l~ll~~GGviv~DNvl 192 (247)
T PLN02589 146 QMIEDGKYHGTFDFIFVDADK-------------------------DNYINYHKRLIDLVKVGGVIGYDNTL 192 (247)
T ss_pred HHHhccccCCcccEEEecCCH-------------------------HHhHHHHHHHHHhcCCCeEEEEcCCC
Confidence 32 2589999999654 12344577888999999999876554
No 118
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=99.16 E-value=1.6e-10 Score=120.54 Aligned_cols=103 Identities=20% Similarity=0.252 Sum_probs=85.3
Q ss_pred CeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEcCCC
Q 009708 337 QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPC 416 (528)
Q Consensus 337 ~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~Pc 416 (528)
-+|||++||+|..++.++...++..+|+++|+++..++.+++|++.+++.+ +++++.|+..+......+||+|++||+-
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~-~~v~~~Da~~~l~~~~~~fDvIdlDPfG 124 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVEN-IEVPNEDAANVLRYRNRKFHVIDIDPFG 124 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEchhHHHHHHHhCCCCCEEEeCCCC
Confidence 489999999999999999875455789999999999999999999999875 8899999988765444679999999963
Q ss_pred CCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 417 SGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 417 sg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
+. ..+++.+.+.+++||.|. .|||
T Consensus 125 s~--------------------------~~fld~al~~~~~~glL~-vTaT 148 (374)
T TIGR00308 125 TP--------------------------APFVDSAIQASAERGLLL-VTAT 148 (374)
T ss_pred Cc--------------------------HHHHHHHHHhcccCCEEE-EEec
Confidence 21 135889999999988554 5554
No 119
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.15 E-value=1.2e-10 Score=112.90 Aligned_cols=106 Identities=25% Similarity=0.291 Sum_probs=83.6
Q ss_pred CCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCc-----cEEEEcCccccccccCCCCC
Q 009708 333 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNS-----VIRTIHADLRTFADNSTVKC 407 (528)
Q Consensus 333 ~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~-----~i~~~~~D~~~~~~~~~~~f 407 (528)
+..|.+|||+|||.|..+..||+. +..|+|+|+++.+++.|++........+ ++++.+.|+.... ++|
T Consensus 87 ~~~g~~ilDvGCGgGLLSepLArl---ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~----~~f 159 (282)
T KOG1270|consen 87 PLLGMKILDVGCGGGLLSEPLARL---GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT----GKF 159 (282)
T ss_pred ccCCceEEEeccCccccchhhHhh---CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc----ccc
Confidence 334688999999999999999987 5799999999999999999955544333 2556666665543 569
Q ss_pred CEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 408 DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 408 D~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
|.|+| .++-+..+...++++...++|||||.|+++|-.
T Consensus 160 DaVvc----------------------sevleHV~dp~~~l~~l~~~lkP~G~lfittin 197 (282)
T KOG1270|consen 160 DAVVC----------------------SEVLEHVKDPQEFLNCLSALLKPNGRLFITTIN 197 (282)
T ss_pred ceeee----------------------HHHHHHHhCHHHHHHHHHHHhCCCCceEeeehh
Confidence 99996 345555555678899999999999999999864
No 120
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.15 E-value=5.6e-10 Score=111.29 Aligned_cols=116 Identities=21% Similarity=0.256 Sum_probs=87.5
Q ss_pred eecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccc
Q 009708 319 VQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT 398 (528)
Q Consensus 319 ~Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~ 398 (528)
.|...+..+...+.+.++.+|||+|||+|..+..+++.. +.++|+|+|+|+.+++.++++. ++ +.++.+|+..
T Consensus 15 ~~~~~~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~i~~a~~~~-----~~-~~~~~~d~~~ 87 (258)
T PRK01683 15 ERTRPARDLLARVPLENPRYVVDLGCGPGNSTELLVERW-PAARITGIDSSPAMLAEARSRL-----PD-CQFVEADIAS 87 (258)
T ss_pred HhhcHHHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhC-----CC-CeEEECchhc
Confidence 344445455556677788999999999999999999875 4579999999999999998763 33 7788999876
Q ss_pred ccccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEc
Q 009708 399 FADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465 (528)
Q Consensus 399 ~~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysT 465 (528)
+.. ..+||+|+++.... |.. .+..+++.+.+.|||||.++..+
T Consensus 88 ~~~--~~~fD~v~~~~~l~------------~~~----------d~~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 88 WQP--PQALDLIFANASLQ------------WLP----------DHLELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred cCC--CCCccEEEEccChh------------hCC----------CHHHHHHHHHHhcCCCcEEEEEC
Confidence 543 35899999865431 111 12456999999999999998753
No 121
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.14 E-value=7e-10 Score=109.43 Aligned_cols=110 Identities=19% Similarity=0.187 Sum_probs=85.3
Q ss_pred CCCCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEE
Q 009708 334 QPGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 412 (528)
Q Consensus 334 ~~g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~ 412 (528)
.++.+|||+|||+|..+..+++.+. +.++++++|+|+.+++.++++++..+...+++++++|+..+.. ..+|.|++
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~---~~~d~v~~ 128 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEI---KNASMVIL 128 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCC---CCCCEEee
Confidence 4678999999999999999998753 4689999999999999999999887765568999999987653 35898875
Q ss_pred cCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcC
Q 009708 413 DAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTC 466 (528)
Q Consensus 413 D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTc 466 (528)
.-.. .. ....+ ...+++++.+.|||||.++++..
T Consensus 129 ~~~l------~~-------~~~~~-------~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 129 NFTL------QF-------LPPED-------RIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred ecch------hh-------CCHHH-------HHHHHHHHHHhcCCCeEEEEeec
Confidence 3221 11 11111 23579999999999999998754
No 122
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.14 E-value=2.6e-10 Score=113.65 Aligned_cols=105 Identities=21% Similarity=0.290 Sum_probs=81.2
Q ss_pred HHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCC
Q 009708 327 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVK 406 (528)
Q Consensus 327 ~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~ 406 (528)
+...+...++.+|||+|||+|..+..++... +.++|+|+|+|+.+++.++++ .++++++|+..+.. .++
T Consensus 21 ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~-p~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~--~~~ 89 (255)
T PRK14103 21 LLARVGAERARRVVDLGCGPGNLTRYLARRW-PGAVIEALDSSPEMVAAARER--------GVDARTGDVRDWKP--KPD 89 (255)
T ss_pred HHHhCCCCCCCEEEEEcCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHhc--------CCcEEEcChhhCCC--CCC
Confidence 3455666788999999999999999999875 457999999999999988652 26788999887642 368
Q ss_pred CCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 407 CDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 407 fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
||+|+++.... |-. .+..+++++.+.|||||.+++.
T Consensus 90 fD~v~~~~~l~------------~~~----------d~~~~l~~~~~~LkpgG~l~~~ 125 (255)
T PRK14103 90 TDVVVSNAALQ------------WVP----------EHADLLVRWVDELAPGSWIAVQ 125 (255)
T ss_pred ceEEEEehhhh------------hCC----------CHHHHHHHHHHhCCCCcEEEEE
Confidence 99999865431 110 1245689999999999999875
No 123
>PLN03075 nicotianamine synthase; Provisional
Probab=99.14 E-value=5.8e-10 Score=112.09 Aligned_cols=110 Identities=14% Similarity=0.118 Sum_probs=85.7
Q ss_pred CCCeEEEeCCccchHHHH-HHHHcCCCcEEEEEcCChHHHHHHHHHHHH-cCCCccEEEEcCccccccccCCCCCCEEEE
Q 009708 335 PGQSIVDCCAAPGGKTLY-MASCLSGQGLVYAIDINKGRLRILNETAKL-HQVNSVIRTIHADLRTFADNSTVKCDKVLL 412 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~-la~~~~~~~~v~avD~s~~~l~~~~~n~~~-~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~ 412 (528)
++++|+|+|||+|+.|.. +++...++++++++|+++.+++.++++++. .|+.++++|..+|+.+.... .+.||+|++
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~-l~~FDlVF~ 201 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTES-LKEYDVVFL 201 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccc-cCCcCEEEE
Confidence 568999999999977544 343445678999999999999999999965 88988899999999886432 367999999
Q ss_pred cCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcC
Q 009708 413 DAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTC 466 (528)
Q Consensus 413 D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTc 466 (528)
+ -+-+ | + ...+.+++++..+.|+|||.|++-+.
T Consensus 202 ~-ALi~-----------~--d-------k~~k~~vL~~l~~~LkPGG~Lvlr~~ 234 (296)
T PLN03075 202 A-ALVG-----------M--D-------KEEKVKVIEHLGKHMAPGALLMLRSA 234 (296)
T ss_pred e-cccc-----------c--c-------cccHHHHHHHHHHhcCCCcEEEEecc
Confidence 7 2211 0 0 01245679999999999999998764
No 124
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=99.14 E-value=5.4e-11 Score=121.97 Aligned_cols=167 Identities=19% Similarity=0.282 Sum_probs=105.2
Q ss_pred cceeEeecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHc------CCCcEEEEEcCChHHHHHHHHHHHHcCCCc
Q 009708 314 EGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCL------SGQGLVYAIDINKGRLRILNETAKLHQVNS 387 (528)
Q Consensus 314 ~G~~~~Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~------~~~~~v~avD~s~~~l~~~~~n~~~~g~~~ 387 (528)
.|.|+....-+.+++.++.+.++++|+|.|||+|++.+.+...+ .....++|+|+++..+..++.|+...|...
T Consensus 25 ~G~~~TP~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~ 104 (311)
T PF02384_consen 25 LGQFYTPREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDN 104 (311)
T ss_dssp CGGC---HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHC
T ss_pred cceeehHHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccc
Confidence 57888888889999999999999999999999999999888754 245789999999999999999998877653
Q ss_pred c-EEEEcCccccccccC-CCCCCEEEEcCCCCCCcccc--CCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEE
Q 009708 388 V-IRTIHADLRTFADNS-TVKCDKVLLDAPCSGLGVLS--KRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463 (528)
Q Consensus 388 ~-i~~~~~D~~~~~~~~-~~~fD~Vl~D~Pcsg~G~~~--~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvy 463 (528)
. ..+.++|........ ..+||.|++|||++..+... ...+.+|... ...-......++.++.+.||+||++++
T Consensus 105 ~~~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~Fi~~~l~~Lk~~G~~~~ 181 (311)
T PF02384_consen 105 SNINIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKY---FPPKSNAEYAFIEHALSLLKPGGRAAI 181 (311)
T ss_dssp BGCEEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTC---SSSTTEHHHHHHHHHHHTEEEEEEEEE
T ss_pred ccccccccccccccccccccccccccCCCCcccccccccccccccccccc---CCCccchhhhhHHHHHhhcccccceeE
Confidence 2 357788876554332 46899999999997653311 1112233221 000011122378999999999999765
Q ss_pred EcCC--CCchhhHHHHHHHHhh
Q 009708 464 STCS--IDPEENEERVEAFLLR 483 (528)
Q Consensus 464 sTcs--~~~~Ene~~v~~~l~~ 483 (528)
..-+ +.....+..+..+|.+
T Consensus 182 Ilp~~~L~~~~~~~~iR~~ll~ 203 (311)
T PF02384_consen 182 ILPNGFLFSSSSEKKIRKYLLE 203 (311)
T ss_dssp EEEHHHHHGSTHHHHHHHHHHH
T ss_pred EecchhhhccchHHHHHHHHHh
Confidence 5433 2232223445544443
No 125
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=99.12 E-value=4e-10 Score=115.11 Aligned_cols=122 Identities=28% Similarity=0.430 Sum_probs=97.7
Q ss_pred CCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEc
Q 009708 334 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLD 413 (528)
Q Consensus 334 ~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D 413 (528)
.+|++|+||+||-|.+|+.+|.. +..+|+|+|+||.+++.+++|++.|++.+.++.+++|+..+.... ..||.|+++
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~--g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~-~~aDrIim~ 263 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKK--GRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPEL-GVADRIIMG 263 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhc--CCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhcc-ccCCEEEeC
Confidence 46999999999999999999986 334599999999999999999999999998999999999987653 679999998
Q ss_pred CCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchh---hHHHHHHHHhhC
Q 009708 414 APCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEE---NEERVEAFLLRH 484 (528)
Q Consensus 414 ~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~E---ne~~v~~~l~~~ 484 (528)
-|-+. .+++..|.+.+++||++.|.+-.-.... ....+..+..+.
T Consensus 264 ~p~~a--------------------------~~fl~~A~~~~k~~g~iHyy~~~~e~~~~~~~~~~i~~~~~~~ 311 (341)
T COG2520 264 LPKSA--------------------------HEFLPLALELLKDGGIIHYYEFVPEDDIEERPEKRIKSAARKG 311 (341)
T ss_pred CCCcc--------------------------hhhHHHHHHHhhcCcEEEEEeccchhhcccchHHHHHHHHhhc
Confidence 88743 3458899999999999987665433221 334444444443
No 126
>PRK08317 hypothetical protein; Provisional
Probab=99.12 E-value=6.1e-10 Score=108.77 Aligned_cols=116 Identities=20% Similarity=0.252 Sum_probs=87.8
Q ss_pred HHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCC
Q 009708 327 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVK 406 (528)
Q Consensus 327 ~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~ 406 (528)
+...+.+.++.+|||+|||+|..+..++..+++.++++++|+++.+++.++++.... ..+++++.+|+..... ....
T Consensus 11 ~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~--~~~~~~~~~d~~~~~~-~~~~ 87 (241)
T PRK08317 11 TFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGL--GPNVEFVRGDADGLPF-PDGS 87 (241)
T ss_pred HHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCC--CCceEEEecccccCCC-CCCC
Confidence 344567788899999999999999999998755679999999999999999883332 2348889999876542 2468
Q ss_pred CCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 407 CDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 407 fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
||.|+++... ..- .....+++++.++|||||.+++..+.
T Consensus 88 ~D~v~~~~~~------~~~----------------~~~~~~l~~~~~~L~~gG~l~~~~~~ 126 (241)
T PRK08317 88 FDAVRSDRVL------QHL----------------EDPARALAEIARVLRPGGRVVVLDTD 126 (241)
T ss_pred ceEEEEechh------hcc----------------CCHHHHHHHHHHHhcCCcEEEEEecC
Confidence 9999975322 100 11234689999999999999988764
No 127
>PRK04457 spermidine synthase; Provisional
Probab=99.12 E-value=1.6e-09 Score=108.42 Aligned_cols=115 Identities=18% Similarity=0.240 Sum_probs=89.3
Q ss_pred CCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEc
Q 009708 334 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLD 413 (528)
Q Consensus 334 ~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D 413 (528)
.++.+|||+|||.|..+..++... +..+|+++|+++..++.+++++...+...+++++++|+.++......+||+|++|
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D 143 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYL-PDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVD 143 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEe
Confidence 345689999999999999998875 4689999999999999999998766554569999999988765445689999999
Q ss_pred CCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 414 APCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 414 ~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
+.. +.+. |. .+ ...++++.+.+.|+|||++++..++
T Consensus 144 ~~~-~~~~----~~--------~l-----~t~efl~~~~~~L~pgGvlvin~~~ 179 (262)
T PRK04457 144 GFD-GEGI----ID--------AL-----CTQPFFDDCRNALSSDGIFVVNLWS 179 (262)
T ss_pred CCC-CCCC----cc--------cc-----CcHHHHHHHHHhcCCCcEEEEEcCC
Confidence 632 2221 10 00 1246799999999999999976544
No 128
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.11 E-value=2.4e-10 Score=113.49 Aligned_cols=117 Identities=20% Similarity=0.303 Sum_probs=88.3
Q ss_pred eecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccc
Q 009708 319 VQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT 398 (528)
Q Consensus 319 ~Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~ 398 (528)
+|...+..+...+...++.+|||+|||+|..+..++.. ..+|+++|+|+.+++.++++.. . +.++++|+..
T Consensus 26 ~q~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~~D~s~~~l~~a~~~~~-----~-~~~~~~d~~~ 96 (251)
T PRK10258 26 LQRQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRER---GSQVTALDLSPPMLAQARQKDA-----A-DHYLAGDIES 96 (251)
T ss_pred HHHHHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhCC-----C-CCEEEcCccc
Confidence 57777777777777666789999999999999888764 4799999999999999887642 1 3578888877
Q ss_pred ccccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 399 FADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 399 ~~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
++. ..++||+|+++.+- .|..+ ...+|.++.++|||||.+++++-.
T Consensus 97 ~~~-~~~~fD~V~s~~~l------------~~~~d----------~~~~l~~~~~~Lk~gG~l~~~~~~ 142 (251)
T PRK10258 97 LPL-ATATFDLAWSNLAV------------QWCGN----------LSTALRELYRVVRPGGVVAFTTLV 142 (251)
T ss_pred CcC-CCCcEEEEEECchh------------hhcCC----------HHHHHHHHHHHcCCCeEEEEEeCC
Confidence 543 24679999975332 12111 234689999999999999988643
No 129
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.10 E-value=6.1e-10 Score=111.51 Aligned_cols=129 Identities=13% Similarity=0.155 Sum_probs=92.3
Q ss_pred cccceeEeecc-hHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEE
Q 009708 312 LKEGLCAVQDE-SAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIR 390 (528)
Q Consensus 312 ~~~G~~~~Qd~-~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~ 390 (528)
|..|++..... ....++..+.+.++.+|||+|||+|..+..++... .++|+++|+++.+++.+++++.. .+++.
T Consensus 28 ~g~~~~~~gg~~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~~~~~~a~~~~~~---~~~i~ 102 (263)
T PTZ00098 28 FGEDYISSGGIEATTKILSDIELNENSKVLDIGSGLGGGCKYINEKY--GAHVHGVDICEKMVNIAKLRNSD---KNKIE 102 (263)
T ss_pred hCCCCCCCCchHHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhc--CCEEEEEECCHHHHHHHHHHcCc---CCceE
Confidence 44455555422 24455566788899999999999999999988753 46999999999999999987654 23588
Q ss_pred EEcCccccccccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcC
Q 009708 391 TIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTC 466 (528)
Q Consensus 391 ~~~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTc 466 (528)
++++|+...+. ..++||+|++..... + .... ....+++++.++|||||+|+++..
T Consensus 103 ~~~~D~~~~~~-~~~~FD~V~s~~~l~------h-------~~~~-------d~~~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 103 FEANDILKKDF-PENTFDMIYSRDAIL------H-------LSYA-------DKKKLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred EEECCcccCCC-CCCCeEEEEEhhhHH------h-------CCHH-------HHHHHHHHHHHHcCCCcEEEEEEe
Confidence 99999876432 236899999721110 0 0001 234579999999999999997654
No 130
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.10 E-value=7.2e-11 Score=97.98 Aligned_cols=95 Identities=21% Similarity=0.215 Sum_probs=72.3
Q ss_pred EEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEcCCCCCC
Q 009708 340 VDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGL 419 (528)
Q Consensus 340 LDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~Pcsg~ 419 (528)
||+|||+|..+..+++. +..+|+++|+++.+++.++++....+ +.++++|+..++. ..++||.|++.--.
T Consensus 1 LdiG~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~~~~~~~~~~----~~~~~~d~~~l~~-~~~sfD~v~~~~~~--- 70 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR--GGASVTGIDISEEMLEQARKRLKNEG----VSFRQGDAEDLPF-PDNSFDVVFSNSVL--- 70 (95)
T ss_dssp EEET-TTSHHHHHHHHT--TTCEEEEEES-HHHHHHHHHHTTTST----EEEEESBTTSSSS--TT-EEEEEEESHG---
T ss_pred CEecCcCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHhcccccC----chheeehHHhCcc-ccccccccccccce---
Confidence 89999999999999987 56899999999999999998776543 5589999988853 35799999973221
Q ss_pred ccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEE
Q 009708 420 GVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463 (528)
Q Consensus 420 G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvy 463 (528)
.. + ..+..+++++.++|||||++++
T Consensus 71 ---~~------------~----~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 71 ---HH------------L----EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp ---GG------------S----SHHHHHHHHHHHHEEEEEEEEE
T ss_pred ---ee------------c----cCHHHHHHHHHHHcCcCeEEeC
Confidence 10 0 2345679999999999999984
No 131
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.10 E-value=2.5e-10 Score=97.11 Aligned_cols=99 Identities=26% Similarity=0.364 Sum_probs=73.9
Q ss_pred EEEeCCccchHHHHHHHHcC--CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEcCCC
Q 009708 339 IVDCCAAPGGKTLYMASCLS--GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPC 416 (528)
Q Consensus 339 VLDl~aG~G~kt~~la~~~~--~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~Pc 416 (528)
|||+|||+|..+..++..+. ...+++++|+|+.+++.++++....+.+ ++++++|+.++... .++||+|++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~--~~~~~~D~~~l~~~-~~~~D~v~~---- 73 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPK--VRFVQADARDLPFS-DGKFDLVVC---- 73 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTT--SEEEESCTTCHHHH-SSSEEEEEE----
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCc--eEEEECCHhHCccc-CCCeeEEEE----
Confidence 79999999999999998862 2379999999999999999999887773 78999999987643 468999996
Q ss_pred CCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCC
Q 009708 417 SGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGG 459 (528)
Q Consensus 417 sg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG 459 (528)
++..+ .. .+++++ ..++++..++|+|||
T Consensus 74 ~~~~~-~~-------~~~~~~-------~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 74 SGLSL-HH-------LSPEEL-------EALLRRIARLLRPGG 101 (101)
T ss_dssp -TTGG-GG-------SSHHHH-------HHHHHHHHHTEEEEE
T ss_pred cCCcc-CC-------CCHHHH-------HHHHHHHHHHhCCCC
Confidence 22111 11 233333 456999999999998
No 132
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.09 E-value=6.7e-10 Score=120.55 Aligned_cols=117 Identities=22% Similarity=0.249 Sum_probs=88.3
Q ss_pred HHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCC
Q 009708 325 GLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNST 404 (528)
Q Consensus 325 ~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~ 404 (528)
..+++.+.+.++.+|||+|||+|..+..++... +.+|+|+|+|+.+++.+++++.. ...+++++++|+...+. ..
T Consensus 256 e~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvDiS~~~l~~A~~~~~~--~~~~v~~~~~d~~~~~~-~~ 330 (475)
T PLN02336 256 KEFVDKLDLKPGQKVLDVGCGIGGGDFYMAENF--DVHVVGIDLSVNMISFALERAIG--RKCSVEFEVADCTKKTY-PD 330 (475)
T ss_pred HHHHHhcCCCCCCEEEEEeccCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhhc--CCCceEEEEcCcccCCC-CC
Confidence 445556667788899999999999999999864 46899999999999999988763 33458999999877542 23
Q ss_pred CCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCC
Q 009708 405 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSI 468 (528)
Q Consensus 405 ~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~ 468 (528)
++||+|++.. ++.+-++ ...+++.+.++|||||+|++++...
T Consensus 331 ~~fD~I~s~~------~l~h~~d----------------~~~~l~~~~r~LkpgG~l~i~~~~~ 372 (475)
T PLN02336 331 NSFDVIYSRD------TILHIQD----------------KPALFRSFFKWLKPGGKVLISDYCR 372 (475)
T ss_pred CCEEEEEECC------cccccCC----------------HHHHHHHHHHHcCCCeEEEEEEecc
Confidence 6799999631 2222111 2356999999999999999876443
No 133
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.08 E-value=8.4e-10 Score=107.53 Aligned_cols=105 Identities=17% Similarity=0.106 Sum_probs=83.2
Q ss_pred CeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEcCCC
Q 009708 337 QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPC 416 (528)
Q Consensus 337 ~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~Pc 416 (528)
++|||+|||+|+.+..+++.. +..+|+++|+|+..++.++++++..|+.++++++..|+...+. .++||+|++.
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~-~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~--~~~fD~I~~~--- 74 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERH-PHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPF--PDTYDLVFGF--- 74 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCC--CCCCCEeehH---
Confidence 379999999999999999875 3578999999999999999999999998889999999865432 3579999852
Q ss_pred CCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcC
Q 009708 417 SGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTC 466 (528)
Q Consensus 417 sg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTc 466 (528)
+++. . ......+++.+.++|||||++++++.
T Consensus 75 ---~~l~---------------~-~~~~~~~l~~~~~~LkpgG~l~i~~~ 105 (224)
T smart00828 75 ---EVIH---------------H-IKDKMDLFSNISRHLKDGGHLVLADF 105 (224)
T ss_pred ---HHHH---------------h-CCCHHHHHHHHHHHcCCCCEEEEEEc
Confidence 1111 1 11134579999999999999997754
No 134
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=99.08 E-value=3e-09 Score=103.34 Aligned_cols=125 Identities=20% Similarity=0.388 Sum_probs=103.3
Q ss_pred eEeecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcc
Q 009708 317 CAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADL 396 (528)
Q Consensus 317 ~~~Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~ 396 (528)
-++--+...++...|++.||.+||+.|+|+|+.+.+++..+.+.|+++.+|+...+.+.+.+.++..|+.+++++.+-|.
T Consensus 87 QI~Yt~Dia~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDV 166 (314)
T KOG2915|consen 87 QILYTPDIAMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDV 166 (314)
T ss_pred eEEecccHHHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeec
Confidence 33334455678888999999999999999999999999999999999999999999999999999999998899999998
Q ss_pred ccccccC-CCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCch
Q 009708 397 RTFADNS-TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPE 471 (528)
Q Consensus 397 ~~~~~~~-~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~ 471 (528)
....... ...+|.|++|.|. .| ..+-+++..||.+|.-+ |++.|.
T Consensus 167 c~~GF~~ks~~aDaVFLDlPa------------Pw---------------~AiPha~~~lk~~g~r~---csFSPC 212 (314)
T KOG2915|consen 167 CGSGFLIKSLKADAVFLDLPA------------PW---------------EAIPHAAKILKDEGGRL---CSFSPC 212 (314)
T ss_pred ccCCccccccccceEEEcCCC------------hh---------------hhhhhhHHHhhhcCceE---EeccHH
Confidence 7654322 4689999999887 22 13667778888877544 677775
No 135
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.08 E-value=7.7e-10 Score=113.87 Aligned_cols=115 Identities=23% Similarity=0.284 Sum_probs=84.4
Q ss_pred HHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCC
Q 009708 326 LVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTV 405 (528)
Q Consensus 326 l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~ 405 (528)
.+...+.+..|.+|||+|||+|..+..++.. +...|+|+|.|+.++...+...+..+...++.++.+|+.+++. .+
T Consensus 113 ~l~~~l~~l~g~~VLDIGCG~G~~~~~la~~--g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~--~~ 188 (322)
T PRK15068 113 RVLPHLSPLKGRTVLDVGCGNGYHMWRMLGA--GAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA--LK 188 (322)
T ss_pred HHHHhhCCCCCCEEEEeccCCcHHHHHHHHc--CCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC--cC
Confidence 3444566667889999999999999999885 3457999999999887655544444434358899999988764 47
Q ss_pred CCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcC
Q 009708 406 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTC 466 (528)
Q Consensus 406 ~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTc 466 (528)
.||.|++ .|++.+.+ + ...+|+++.+.|+|||.+++++.
T Consensus 189 ~FD~V~s------~~vl~H~~------d----------p~~~L~~l~~~LkpGG~lvl~~~ 227 (322)
T PRK15068 189 AFDTVFS------MGVLYHRR------S----------PLDHLKQLKDQLVPGGELVLETL 227 (322)
T ss_pred CcCEEEE------CChhhccC------C----------HHHHHHHHHHhcCCCcEEEEEEE
Confidence 8999996 23332211 1 12458999999999999998754
No 136
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.07 E-value=1.5e-09 Score=106.31 Aligned_cols=119 Identities=21% Similarity=0.312 Sum_probs=90.4
Q ss_pred HHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCC
Q 009708 327 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVK 406 (528)
Q Consensus 327 ~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~ 406 (528)
+...+...++.+|||+|||+|..+..++...+...+++++|+++.+++.+++++...+..+.+.++.+|+..... ..+.
T Consensus 43 ~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~ 121 (239)
T PRK00216 43 TIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPF-PDNS 121 (239)
T ss_pred HHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCC-CCCC
Confidence 444555667889999999999999999987543579999999999999999999887666668999999987653 2467
Q ss_pred CCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCC
Q 009708 407 CDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSI 468 (528)
Q Consensus 407 fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~ 468 (528)
||+|++.- ++...+ + ...+|+.+.++|+|||.+++.+.+.
T Consensus 122 ~D~I~~~~------~l~~~~---------~-------~~~~l~~~~~~L~~gG~li~~~~~~ 161 (239)
T PRK00216 122 FDAVTIAF------GLRNVP---------D-------IDKALREMYRVLKPGGRLVILEFSK 161 (239)
T ss_pred ccEEEEec------ccccCC---------C-------HHHHHHHHHHhccCCcEEEEEEecC
Confidence 99998621 111111 1 1346889999999999998876543
No 137
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.07 E-value=1.3e-09 Score=110.46 Aligned_cols=103 Identities=23% Similarity=0.198 Sum_probs=79.7
Q ss_pred CCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEcC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDA 414 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~ 414 (528)
++.+|||+|||+|..+..++.. +.+|+|+|+|+.+++.++++++..++ + +++...|+..... .++||+|++..
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~---g~~V~avD~s~~ai~~~~~~~~~~~l-~-v~~~~~D~~~~~~--~~~fD~I~~~~ 192 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALL---GFDVTAVDINQQSLENLQEIAEKENL-N-IRTGLYDINSASI--QEEYDFILSTV 192 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHHcCC-c-eEEEEechhcccc--cCCccEEEEcc
Confidence 3459999999999999999874 47999999999999999999999888 3 7888888866432 46899999753
Q ss_pred CCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 415 PCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 415 Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
.... .+.. ....+++.+.++|+|||++++.
T Consensus 193 vl~~-------------l~~~-------~~~~~l~~~~~~LkpgG~~l~v 222 (287)
T PRK12335 193 VLMF-------------LNRE-------RIPAIIKNMQEHTNPGGYNLIV 222 (287)
T ss_pred hhhh-------------CCHH-------HHHHHHHHHHHhcCCCcEEEEE
Confidence 3210 1111 2235699999999999996653
No 138
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.05 E-value=1.7e-09 Score=113.79 Aligned_cols=114 Identities=16% Similarity=0.246 Sum_probs=86.1
Q ss_pred HHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccC
Q 009708 324 AGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS 403 (528)
Q Consensus 324 s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~ 403 (528)
...+...+.+++|.+|||+|||+|+.+..+++.. +.+|+|+|+|+.+++.++++++ ++. +++...|...+
T Consensus 156 ~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~--g~~V~giDlS~~~l~~A~~~~~--~l~--v~~~~~D~~~l---- 225 (383)
T PRK11705 156 LDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHY--GVSVVGVTISAEQQKLAQERCA--GLP--VEIRLQDYRDL---- 225 (383)
T ss_pred HHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhc--cCe--EEEEECchhhc----
Confidence 3456667788899999999999999999999864 4699999999999999999885 332 77888887664
Q ss_pred CCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 404 TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 404 ~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
.++||.|++.... ..-+ .. ....+++.+.++|||||++++.+..
T Consensus 226 ~~~fD~Ivs~~~~------ehvg-------~~-------~~~~~l~~i~r~LkpGG~lvl~~i~ 269 (383)
T PRK11705 226 NGQFDRIVSVGMF------EHVG-------PK-------NYRTYFEVVRRCLKPDGLFLLHTIG 269 (383)
T ss_pred CCCCCEEEEeCch------hhCC-------hH-------HHHHHHHHHHHHcCCCcEEEEEEcc
Confidence 2579999863221 1100 01 1235689999999999999987644
No 139
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.05 E-value=1.6e-09 Score=102.44 Aligned_cols=111 Identities=26% Similarity=0.254 Sum_probs=80.8
Q ss_pred HHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCC
Q 009708 328 VAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKC 407 (528)
Q Consensus 328 ~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~f 407 (528)
...+..-++.++||+|||.|..++++|++ +-.|+|+|+|+..++.+++.++..+++ |++.+.|+..... ++.|
T Consensus 23 ~~a~~~~~~g~~LDlgcG~GRNalyLA~~---G~~VtAvD~s~~al~~l~~~a~~~~l~--i~~~~~Dl~~~~~--~~~y 95 (192)
T PF03848_consen 23 LEAVPLLKPGKALDLGCGEGRNALYLASQ---GFDVTAVDISPVALEKLQRLAEEEGLD--IRTRVADLNDFDF--PEEY 95 (192)
T ss_dssp HHHCTTS-SSEEEEES-TTSHHHHHHHHT---T-EEEEEESSHHHHHHHHHHHHHTT-T--EEEEE-BGCCBS---TTTE
T ss_pred HHHHhhcCCCcEEEcCCCCcHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHhhcCce--eEEEEecchhccc--cCCc
Confidence 34455545669999999999999999986 578999999999999999999999987 8889999877653 3679
Q ss_pred CEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEc
Q 009708 408 DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465 (528)
Q Consensus 408 D~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysT 465 (528)
|.|++.. ++.. ..++.+ ..+++...+.++|||++++.|
T Consensus 96 D~I~st~------v~~f-------L~~~~~-------~~i~~~m~~~~~pGG~~li~~ 133 (192)
T PF03848_consen 96 DFIVSTV------VFMF-------LQRELR-------PQIIENMKAATKPGGYNLIVT 133 (192)
T ss_dssp EEEEEES------SGGG-------S-GGGH-------HHHHHHHHHTEEEEEEEEEEE
T ss_pred CEEEEEE------Eecc-------CCHHHH-------HHHHHHHHhhcCCcEEEEEEE
Confidence 9998531 1111 111222 235888899999999988854
No 140
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.05 E-value=1.1e-09 Score=106.44 Aligned_cols=73 Identities=21% Similarity=0.287 Sum_probs=63.2
Q ss_pred CCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEE
Q 009708 333 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 412 (528)
Q Consensus 333 ~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~ 412 (528)
..++.+|||+|||+|..+..++.. ..+|+|+|+|+.++..+++++...+..+++++.++|+.... .+||+|++
T Consensus 53 ~~~~~~vLDiGcG~G~~~~~la~~---~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~fD~ii~ 125 (219)
T TIGR02021 53 PLKGKRVLDAGCGTGLLSIELAKR---GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC----GEFDIVVC 125 (219)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC----CCcCEEEE
Confidence 456889999999999999999874 45899999999999999999988887556899999987754 57999986
No 141
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.04 E-value=3.1e-09 Score=108.72 Aligned_cols=125 Identities=18% Similarity=0.187 Sum_probs=94.7
Q ss_pred hHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc
Q 009708 323 SAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN 402 (528)
Q Consensus 323 ~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~ 402 (528)
....+...++..++.+|||+|||+|..+..+++.. +..+++++|. +..++.+++|++..|+.++++++.+|+.+...
T Consensus 137 ~~~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~- 213 (306)
T TIGR02716 137 AIQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHF-PELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESY- 213 (306)
T ss_pred HHHHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHC-CCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCC-
Confidence 34556666777888999999999999999999985 4679999997 78999999999999998889999999876332
Q ss_pred CCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchh
Q 009708 403 STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEE 472 (528)
Q Consensus 403 ~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~E 472 (528)
..+|.|++- .++.. +..+.. ..+|+++.+.|+|||+|+.....+...+
T Consensus 214 --~~~D~v~~~------~~lh~-------~~~~~~-------~~il~~~~~~L~pgG~l~i~d~~~~~~~ 261 (306)
T TIGR02716 214 --PEADAVLFC------RILYS-------ANEQLS-------TIMCKKAFDAMRSGGRLLILDMVIDDPE 261 (306)
T ss_pred --CCCCEEEeE------hhhhc-------CChHHH-------HHHHHHHHHhcCCCCEEEEEEeccCCCC
Confidence 247988751 11111 111222 3469999999999999998776554433
No 142
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=99.04 E-value=2.8e-09 Score=109.68 Aligned_cols=141 Identities=17% Similarity=0.216 Sum_probs=107.3
Q ss_pred cccccceeEeecch------HHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCC------------------------
Q 009708 310 GLLKEGLCAVQDES------AGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSG------------------------ 359 (528)
Q Consensus 310 ~~~~~G~~~~Qd~~------s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~------------------------ 359 (528)
++++.||=..+.++ +..++.+.+-+++..++|..||+|.+.+.+|.+..+
T Consensus 160 sLhkRGyR~~~g~ApLketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~ 239 (381)
T COG0116 160 SLHKRGYRVYDGPAPLKETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDK 239 (381)
T ss_pred chhhccccccCCCCCchHHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHH
Confidence 34555554444333 344555566778889999999999999998876421
Q ss_pred -------Cc-------EEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEcCCCCCCccccCC
Q 009708 360 -------QG-------LVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKR 425 (528)
Q Consensus 360 -------~~-------~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~ 425 (528)
.. .++|+|+++.+++.|+.|+++.|+.+.|++.++|+..+.... +.+|+||+|||+. .
T Consensus 240 ~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~-~~~gvvI~NPPYG---e---- 311 (381)
T COG0116 240 LREEAEERARRGKELPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPL-EEYGVVISNPPYG---E---- 311 (381)
T ss_pred HHHHHHHHHhhcCccceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCC-CcCCEEEeCCCcc---h----
Confidence 01 378999999999999999999999999999999999987654 6899999999993 1
Q ss_pred chhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEc
Q 009708 426 ADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465 (528)
Q Consensus 426 pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysT 465 (528)
+. .+-.....+|..+.+.+.+.++--+..|++|
T Consensus 312 ---Rl----g~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt 344 (381)
T COG0116 312 ---RL----GSEALVAKLYREFGRTLKRLLAGWSRYVFTT 344 (381)
T ss_pred ---hc----CChhhHHHHHHHHHHHHHHHhcCCceEEEEc
Confidence 11 1113445578899999999999878888765
No 143
>PRK06922 hypothetical protein; Provisional
Probab=99.02 E-value=3.8e-09 Score=115.44 Aligned_cols=127 Identities=17% Similarity=0.233 Sum_probs=88.6
Q ss_pred hcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccc-cCCCCCC
Q 009708 330 VVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-NSTVKCD 408 (528)
Q Consensus 330 ~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~-~~~~~fD 408 (528)
+++..++.+|||+|||+|..+..+++.. +.++|+|+|+|+.+++.+++++...+. .+.++++|+.+++. ..+++||
T Consensus 413 i~d~~~g~rVLDIGCGTG~ls~~LA~~~-P~~kVtGIDIS~~MLe~Ararl~~~g~--~ie~I~gDa~dLp~~fedeSFD 489 (677)
T PRK06922 413 ILDYIKGDTIVDVGAGGGVMLDMIEEET-EDKRIYGIDISENVIDTLKKKKQNEGR--SWNVIKGDAINLSSSFEKESVD 489 (677)
T ss_pred HhhhcCCCEEEEeCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCC--CeEEEEcchHhCccccCCCCEE
Confidence 3444568899999999999998888874 468999999999999999998876654 37889999887653 2246899
Q ss_pred EEEEcCCCCCC-ccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCC
Q 009708 409 KVLLDAPCSGL-GVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSID 469 (528)
Q Consensus 409 ~Vl~D~Pcsg~-G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~ 469 (528)
+|++.++.-.. ..+. ..+..| .. .....+|+++.+.|||||.++...-++.
T Consensus 490 vVVsn~vLH~L~syIp-~~g~~f--~~-------edl~kiLreI~RVLKPGGrLII~D~v~~ 541 (677)
T PRK06922 490 TIVYSSILHELFSYIE-YEGKKF--NH-------EVIKKGLQSAYEVLKPGGRIIIRDGIMT 541 (677)
T ss_pred EEEEchHHHhhhhhcc-cccccc--cH-------HHHHHHHHHHHHHcCCCcEEEEEeCccC
Confidence 99976543100 0000 000001 11 2334569999999999999998754333
No 144
>PRK00811 spermidine synthase; Provisional
Probab=99.02 E-value=4.1e-09 Score=106.65 Aligned_cols=114 Identities=13% Similarity=0.206 Sum_probs=86.5
Q ss_pred CCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcC--C--CccEEEEcCccccccccCCCCCCEE
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQ--V--NSVIRTIHADLRTFADNSTVKCDKV 410 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g--~--~~~i~~~~~D~~~~~~~~~~~fD~V 410 (528)
...+||++|||.|+.+..+++. .+..+|++||+++..++.+++++...+ . +.+++++.+|+..+.....++||+|
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~-~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKH-PSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcC-CCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 3569999999999999999875 345689999999999999999987643 2 4468999999998765445789999
Q ss_pred EEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 411 LLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 411 l~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
++|.+-. .|. . .. + ...++++.+.+.|+|||+++..+.+
T Consensus 155 i~D~~dp-~~~-----~-------~~---l--~t~ef~~~~~~~L~~gGvlv~~~~~ 193 (283)
T PRK00811 155 IVDSTDP-VGP-----A-------EG---L--FTKEFYENCKRALKEDGIFVAQSGS 193 (283)
T ss_pred EECCCCC-CCc-----h-------hh---h--hHHHHHHHHHHhcCCCcEEEEeCCC
Confidence 9996421 011 0 11 1 2356788999999999999875443
No 145
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.01 E-value=3.2e-09 Score=88.13 Aligned_cols=103 Identities=24% Similarity=0.348 Sum_probs=81.6
Q ss_pred eEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEcCCCC
Q 009708 338 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCS 417 (528)
Q Consensus 338 ~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~Pcs 417 (528)
+|+|+|||+|..+..++. .+..+++++|+++..+..++++....+.. .+++++.|..+.......+||+|++++++.
T Consensus 1 ~ildig~G~G~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~ 77 (107)
T cd02440 1 RVLDLGCGTGALALALAS--GPGARVTGVDISPVALELARKAAAALLAD-NVEVLKGDAEELPPEADESFDVIISDPPLH 77 (107)
T ss_pred CeEEEcCCccHHHHHHhc--CCCCEEEEEeCCHHHHHHHHHHHhccccc-ceEEEEcChhhhccccCCceEEEEEcccee
Confidence 489999999999998887 34679999999999999998655544444 488999999887642346799999999984
Q ss_pred CCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 418 GLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 418 g~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
.. ...+..+++.+.+.+++||.++++
T Consensus 78 ~~---------------------~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 78 HL---------------------VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred eh---------------------hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 31 234456789999999999999865
No 146
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.00 E-value=3.8e-09 Score=98.64 Aligned_cols=84 Identities=21% Similarity=0.260 Sum_probs=70.6
Q ss_pred HHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCC
Q 009708 326 LVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTV 405 (528)
Q Consensus 326 l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~ 405 (528)
.++..+++.++++|||+|||+|..|..+++. .++|+++|+++.+++.+++++.. .+ +++++++|+.++... ..
T Consensus 4 ~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~---~~~v~~vE~~~~~~~~~~~~~~~--~~-~v~ii~~D~~~~~~~-~~ 76 (169)
T smart00650 4 KIVRAANLRPGDTVLEIGPGKGALTEELLER---AARVTAIEIDPRLAPRLREKFAA--AD-NLTVIHGDALKFDLP-KL 76 (169)
T ss_pred HHHHhcCCCCcCEEEEECCCccHHHHHHHhc---CCeEEEEECCHHHHHHHHHHhcc--CC-CEEEEECchhcCCcc-cc
Confidence 3455667788899999999999999999986 46899999999999999998864 23 489999999887543 24
Q ss_pred CCCEEEEcCCC
Q 009708 406 KCDKVLLDAPC 416 (528)
Q Consensus 406 ~fD~Vl~D~Pc 416 (528)
.||.|+.|+|+
T Consensus 77 ~~d~vi~n~Py 87 (169)
T smart00650 77 QPYKVVGNLPY 87 (169)
T ss_pred CCCEEEECCCc
Confidence 69999999998
No 147
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.97 E-value=5.2e-09 Score=99.26 Aligned_cols=126 Identities=28% Similarity=0.288 Sum_probs=92.1
Q ss_pred CCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccc------cC-CC
Q 009708 333 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD------NS-TV 405 (528)
Q Consensus 333 ~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~------~~-~~ 405 (528)
+.+|..|+||||+||+++..+++.++..+.|+|+|+.|-.. +.+ |.++++|++.-.. .. ..
T Consensus 43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~-----------~~~-V~~iq~d~~~~~~~~~l~~~l~~~ 110 (205)
T COG0293 43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP-----------IPG-VIFLQGDITDEDTLEKLLEALGGA 110 (205)
T ss_pred ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc-----------CCC-ceEEeeeccCccHHHHHHHHcCCC
Confidence 35689999999999999999999998888899999987553 444 8899999876322 11 23
Q ss_pred CCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchhhHHHHHHHHhhC
Q 009708 406 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRH 484 (528)
Q Consensus 406 ~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~Ene~~v~~~l~~~ 484 (528)
.+|+|++|+..--+|.... +......+-...++-|..+|+|||.++ |..+..++++.+.+.++++
T Consensus 111 ~~DvV~sD~ap~~~g~~~~-----------Dh~r~~~L~~~a~~~a~~vL~~~G~fv---~K~fqg~~~~~~l~~~~~~ 175 (205)
T COG0293 111 PVDVVLSDMAPNTSGNRSV-----------DHARSMYLCELALEFALEVLKPGGSFV---AKVFQGEDFEDLLKALRRL 175 (205)
T ss_pred CcceEEecCCCCcCCCccc-----------cHHHHHHHHHHHHHHHHHeeCCCCeEE---EEEEeCCCHHHHHHHHHHh
Confidence 4799999966655555222 122223334456888899999999999 6677777776666667665
No 148
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=98.96 E-value=1.3e-09 Score=102.37 Aligned_cols=139 Identities=21% Similarity=0.226 Sum_probs=88.5
Q ss_pred EeecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccc
Q 009708 318 AVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR 397 (528)
Q Consensus 318 ~~Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~ 397 (528)
|-|..-.+++...|.-..-.++||+|||.|.+|..||.+ ..+++++|+++..++.+++++.. .++ |++++.|+.
T Consensus 26 YE~~K~~~~l~aaLp~~ry~~alEvGCs~G~lT~~LA~r---Cd~LlavDis~~Al~~Ar~Rl~~--~~~-V~~~~~dvp 99 (201)
T PF05401_consen 26 YERRKYRATLLAALPRRRYRRALEVGCSIGVLTERLAPR---CDRLLAVDISPRALARARERLAG--LPH-VEWIQADVP 99 (201)
T ss_dssp HHHHHHHHHHHHHHTTSSEEEEEEE--TTSHHHHHHGGG---EEEEEEEES-HHHHHHHHHHTTT---SS-EEEEES-TT
T ss_pred HHHHHHHHHHHHhcCccccceeEecCCCccHHHHHHHHh---hCceEEEeCCHHHHHHHHHhcCC--CCC-eEEEECcCC
Confidence 334433344443344444568999999999999999987 46899999999999999998764 454 999999998
Q ss_pred cccccCCCCCCEEEEcCCCCCCccccCCchhhccCC-HHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC------CCc
Q 009708 398 TFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRR-LEDMEELKILQDELLDAASLLVKPGGVLVYSTCS------IDP 470 (528)
Q Consensus 398 ~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~-~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs------~~~ 470 (528)
.+.+ .++||+|++ |..+ |..+ .+++.. ++..+...|+|||.||+.+-. +-.
T Consensus 100 ~~~P--~~~FDLIV~----SEVl---------YYL~~~~~L~~-------~l~~l~~~L~pgG~LV~g~~rd~~c~~wgh 157 (201)
T PF05401_consen 100 EFWP--EGRFDLIVL----SEVL---------YYLDDAEDLRA-------ALDRLVAALAPGGHLVFGHARDANCRRWGH 157 (201)
T ss_dssp T-----SS-EEEEEE----ES-G---------GGSSSHHHHHH-------HHHHHHHTEEEEEEEEEEEE-HHHHHHTT-
T ss_pred CCCC--CCCeeEEEE----ehHh---------HcCCCHHHHHH-------HHHHHHHHhCCCCEEEEEEecCCcccccCc
Confidence 7654 478999996 4333 3333 234443 488889999999999986532 111
Q ss_pred hhhHHHHHHHHhhC
Q 009708 471 EENEERVEAFLLRH 484 (528)
Q Consensus 471 ~Ene~~v~~~l~~~ 484 (528)
.-+.+.|...+.++
T Consensus 158 ~~ga~tv~~~~~~~ 171 (201)
T PF05401_consen 158 AAGAETVLEMLQEH 171 (201)
T ss_dssp S--HHHHHHHHHHH
T ss_pred ccchHHHHHHHHHH
Confidence 22344555555554
No 149
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.94 E-value=1.2e-08 Score=100.02 Aligned_cols=117 Identities=20% Similarity=0.195 Sum_probs=88.7
Q ss_pred HHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCC
Q 009708 325 GLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNST 404 (528)
Q Consensus 325 ~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~ 404 (528)
.++...+.+.++.+|||+|||+|..+..+++. ..+++++|+++..++.+++++...+.. ++++..|...+.....
T Consensus 38 ~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~ 112 (233)
T PRK05134 38 NYIREHAGGLFGKRVLDVGCGGGILSESMARL---GADVTGIDASEENIEVARLHALESGLK--IDYRQTTAEELAAEHP 112 (233)
T ss_pred HHHHHhccCCCCCeEEEeCCCCCHHHHHHHHc---CCeEEEEcCCHHHHHHHHHHHHHcCCc--eEEEecCHHHhhhhcC
Confidence 45555555667889999999999999988875 368999999999999999999887763 6788888877653334
Q ss_pred CCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCC
Q 009708 405 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSI 468 (528)
Q Consensus 405 ~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~ 468 (528)
++||+|++.-... ..+ + ...+|+.+.++|+|||+++++++.-
T Consensus 113 ~~fD~Ii~~~~l~------~~~---------~-------~~~~l~~~~~~L~~gG~l~v~~~~~ 154 (233)
T PRK05134 113 GQFDVVTCMEMLE------HVP---------D-------PASFVRACAKLVKPGGLVFFSTLNR 154 (233)
T ss_pred CCccEEEEhhHhh------ccC---------C-------HHHHHHHHHHHcCCCcEEEEEecCC
Confidence 6899999743221 111 1 1246899999999999999887653
No 150
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.94 E-value=1.2e-08 Score=102.71 Aligned_cols=115 Identities=12% Similarity=0.123 Sum_probs=86.3
Q ss_pred CCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCC---CccEEEEcCccccccccCCCCCCEEEE
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQV---NSVIRTIHADLRTFADNSTVKCDKVLL 412 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~---~~~i~~~~~D~~~~~~~~~~~fD~Vl~ 412 (528)
+.+||++|||.|+.+..++... +..+++++|+++..++.+++++...+. ..+++++.+|+..+.....++||+|++
T Consensus 73 p~~VL~iG~G~G~~~~~ll~~~-~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~ 151 (270)
T TIGR00417 73 PKHVLVIGGGDGGVLREVLKHK-SVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIV 151 (270)
T ss_pred CCEEEEEcCCchHHHHHHHhCC-CcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEE
Confidence 4499999999999998887753 356899999999999999998865431 235888899998866544578999999
Q ss_pred cCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCC
Q 009708 413 DAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSID 469 (528)
Q Consensus 413 D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~ 469 (528)
|++.. .+. . ..+ ...++++.+.+.|+|||+++..+++..
T Consensus 152 D~~~~-~~~-----~-------~~l-----~~~ef~~~~~~~L~pgG~lv~~~~~~~ 190 (270)
T TIGR00417 152 DSTDP-VGP-----A-------ETL-----FTKEFYELLKKALNEDGIFVAQSESPW 190 (270)
T ss_pred eCCCC-CCc-----c-------cch-----hHHHHHHHHHHHhCCCcEEEEcCCCcc
Confidence 98742 111 0 010 124578899999999999998877643
No 151
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=98.92 E-value=1.4e-08 Score=98.40 Aligned_cols=109 Identities=12% Similarity=0.075 Sum_probs=77.6
Q ss_pred CCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCC--------------CccEEEEcCccccc
Q 009708 334 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQV--------------NSVIRTIHADLRTF 399 (528)
Q Consensus 334 ~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~--------------~~~i~~~~~D~~~~ 399 (528)
.++.+|||+|||.|..+.++|++ +..|+|+|+|+.+++.+.. .+|+ ...|+++++|+.++
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~---G~~V~gvD~S~~Ai~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~ 106 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQ---GHRVLGVELSEIAVEQFFA---ENGLTPTVTQQGEFTRYRAGNIEIFCGDFFAL 106 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhC---CCeEEEEeCCHHHHHHHHH---HcCCCcceeccccceeeecCceEEEEccCCCC
Confidence 46779999999999999999985 5689999999999997633 2222 12488899999887
Q ss_pred cccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCC
Q 009708 400 ADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSI 468 (528)
Q Consensus 400 ~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~ 468 (528)
.....++||.|+-- -| +..- .+.. ....+..+.++|||||++++.|-+.
T Consensus 107 ~~~~~~~fD~i~D~-~~-----~~~l-------~~~~-------R~~~~~~l~~lLkpgG~~ll~~~~~ 155 (213)
T TIGR03840 107 TAADLGPVDAVYDR-AA-----LIAL-------PEEM-------RQRYAAHLLALLPPGARQLLITLDY 155 (213)
T ss_pred CcccCCCcCEEEec-hh-----hccC-------CHHH-------HHHHHHHHHHHcCCCCeEEEEEEEc
Confidence 64323579988642 11 1111 1122 2335889999999999877776654
No 152
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.91 E-value=2e-08 Score=97.23 Aligned_cols=116 Identities=22% Similarity=0.316 Sum_probs=85.8
Q ss_pred HHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCC
Q 009708 327 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVK 406 (528)
Q Consensus 327 ~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~ 406 (528)
+...+...++.+|||+|||+|..+..++...+..++++++|+++..+..++++.. ...++.++++|+.+... ..++
T Consensus 31 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~---~~~~i~~~~~d~~~~~~-~~~~ 106 (223)
T TIGR01934 31 AVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE---LPLNIEFIQADAEALPF-EDNS 106 (223)
T ss_pred HHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc---cCCCceEEecchhcCCC-CCCc
Confidence 3444445578899999999999999999876433689999999999999998876 23347889999987653 2367
Q ss_pred CCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCC
Q 009708 407 CDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSI 468 (528)
Q Consensus 407 fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~ 468 (528)
||+|++.-. +... .+. ..+++.+.++|+|||+++..+.+.
T Consensus 107 ~D~i~~~~~------~~~~---------~~~-------~~~l~~~~~~L~~gG~l~~~~~~~ 146 (223)
T TIGR01934 107 FDAVTIAFG------LRNV---------TDI-------QKALREMYRVLKPGGRLVILEFSK 146 (223)
T ss_pred EEEEEEeee------eCCc---------ccH-------HHHHHHHHHHcCCCcEEEEEEecC
Confidence 999986311 1111 111 246899999999999999876653
No 153
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.91 E-value=9.7e-09 Score=98.05 Aligned_cols=122 Identities=20% Similarity=0.210 Sum_probs=101.0
Q ss_pred cchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccc
Q 009708 321 DESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 400 (528)
Q Consensus 321 d~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~ 400 (528)
+...+++..++..-...++||+|..+|.-++..|..++.+|+|+++|+++...+...+..+..|+..+|+++++++.+..
T Consensus 59 ~d~g~fl~~li~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esL 138 (237)
T KOG1663|consen 59 PDKGQFLQMLIRLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESL 138 (237)
T ss_pred hHHHHHHHHHHHHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhH
Confidence 44456666666655677999999999999999999999999999999999999999999999999999999999988754
Q ss_pred cc-----CCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 401 DN-----STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 401 ~~-----~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
+. ..+.||.+|+|+--. .+....+++.+++|+||.|++-...
T Consensus 139 d~l~~~~~~~tfDfaFvDadK~-------------------------nY~~y~e~~l~Llr~GGvi~~DNvl 185 (237)
T KOG1663|consen 139 DELLADGESGTFDFAFVDADKD-------------------------NYSNYYERLLRLLRVGGVIVVDNVL 185 (237)
T ss_pred HHHHhcCCCCceeEEEEccchH-------------------------HHHHHHHHHHhhcccccEEEEeccc
Confidence 32 257899999996541 1225688899999999999987643
No 154
>PRK03612 spermidine synthase; Provisional
Probab=98.90 E-value=7.4e-09 Score=113.34 Aligned_cols=133 Identities=14% Similarity=0.139 Sum_probs=92.6
Q ss_pred CCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHH--HHc---CC-CccEEEEcCccccccccCCCCC
Q 009708 334 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETA--KLH---QV-NSVIRTIHADLRTFADNSTVKC 407 (528)
Q Consensus 334 ~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~--~~~---g~-~~~i~~~~~D~~~~~~~~~~~f 407 (528)
.+..+|||+|||.|..+..+++. ++..+|+++|+|++.++.++++. ... .. +.+++++++|+.++.....++|
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~f 374 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKF 374 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCC
Confidence 34579999999999999988874 33369999999999999999953 221 12 2468999999998765555789
Q ss_pred CEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCc-hhhHHHHHHHHhhC
Q 009708 408 DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDP-EENEERVEAFLLRH 484 (528)
Q Consensus 408 D~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~-~Ene~~v~~~l~~~ 484 (528)
|+|++|+|... .|.. .. -...++++.+.+.|||||.++..+++... .+.-..+.+.+++.
T Consensus 375 DvIi~D~~~~~------~~~~---------~~--L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~ 435 (521)
T PRK03612 375 DVIIVDLPDPS------NPAL---------GK--LYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAA 435 (521)
T ss_pred CEEEEeCCCCC------Ccch---------hc--cchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHc
Confidence 99999987521 1100 00 11245788899999999999987776432 22223344445543
No 155
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.90 E-value=1.3e-08 Score=99.07 Aligned_cols=107 Identities=21% Similarity=0.222 Sum_probs=83.1
Q ss_pred CCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEcC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDA 414 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~ 414 (528)
.+.+|||+|||+|..+..+++. ..+++++|+++.+++.+++++...+..+ +.+.+.|+.++......+||+|++..
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~D~i~~~~ 120 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARL---GANVTGIDASEENIEVAKLHAKKDPLLK-IEYRCTSVEDLAEKGAKSFDVVTCME 120 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEeCCHHHhhcCCCCCccEEEehh
Confidence 4779999999999999988874 3579999999999999999999887643 78888998776543346899999742
Q ss_pred CCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 415 PCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 415 Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
.. . .......+|..+.+.|++||.++++++.
T Consensus 121 ~l------~----------------~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 151 (224)
T TIGR01983 121 VL------E----------------HVPDPQAFIRACAQLLKPGGILFFSTIN 151 (224)
T ss_pred HH------H----------------hCCCHHHHHHHHHHhcCCCcEEEEEecC
Confidence 21 0 0111235689999999999999988764
No 156
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.89 E-value=7e-09 Score=99.11 Aligned_cols=134 Identities=21% Similarity=0.281 Sum_probs=95.8
Q ss_pred eEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc-C-CCCCCEEEEcCC
Q 009708 338 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-S-TVKCDKVLLDAP 415 (528)
Q Consensus 338 ~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~-~-~~~fD~Vl~D~P 415 (528)
.+||+|||.|...+.+|.. .++..++|+|++..++..+.+.+.+.+++| +.++++|+..+... . ++++|.|.+.=|
T Consensus 20 l~lEIG~G~G~~l~~~A~~-~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~N-v~~~~~da~~~l~~~~~~~~v~~i~i~FP 97 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKR-NPDINFIGIEIRKKRVAKALRKAEKRGLKN-VRFLRGDARELLRRLFPPGSVDRIYINFP 97 (195)
T ss_dssp EEEEET-TTSHHHHHHHHH-STTSEEEEEES-HHHHHHHHHHHHHHTTSS-EEEEES-CTTHHHHHSTTTSEEEEEEES-
T ss_pred eEEEecCCCCHHHHHHHHH-CCCCCEEEEecchHHHHHHHHHHHhhcccc-eEEEEccHHHHHhhcccCCchheEEEeCC
Confidence 8999999999999999998 567899999999999999999999999997 89999999885432 2 478999998876
Q ss_pred CCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchhhHHHHHHHHhh-CCCceEe
Q 009708 416 CSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLR-HPEFSID 490 (528)
Q Consensus 416 csg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~Ene~~v~~~l~~-~~~~~~~ 490 (528)
.- +.+....+++. .+..+|+...+.|+|||.|.+.|=. ++--+.+...+.. ++.|+..
T Consensus 98 DP----WpK~rH~krRl----------~~~~fl~~~~~~L~~gG~l~~~TD~---~~y~~~~~~~~~~~~~~f~~~ 156 (195)
T PF02390_consen 98 DP----WPKKRHHKRRL----------VNPEFLELLARVLKPGGELYFATDV---EEYAEWMLEQFEESHPGFENI 156 (195)
T ss_dssp --------SGGGGGGST----------TSHHHHHHHHHHEEEEEEEEEEES----HHHHHHHHHHHHHHSTTEEEE
T ss_pred CC----Ccccchhhhhc----------CCchHHHHHHHHcCCCCEEEEEeCC---HHHHHHHHHHHHhcCcCeEEc
Confidence 61 22222222221 3456788899999999999987743 2222233344555 6888876
No 157
>PRK01581 speE spermidine synthase; Validated
Probab=98.88 E-value=3.2e-08 Score=101.87 Aligned_cols=114 Identities=12% Similarity=0.165 Sum_probs=83.1
Q ss_pred CCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHH-----HHcCC-CccEEEEcCccccccccCCCCCCE
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETA-----KLHQV-NSVIRTIHADLRTFADNSTVKCDK 409 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~-----~~~g~-~~~i~~~~~D~~~~~~~~~~~fD~ 409 (528)
..+||++|||.|+.+..+++. .+..+|++||+++.+++.+++.. .+.++ +.+++++.+|+..+.....++||+
T Consensus 151 PkrVLIIGgGdG~tlrelLk~-~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YDV 229 (374)
T PRK01581 151 PKRVLILGGGDGLALREVLKY-ETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYDV 229 (374)
T ss_pred CCEEEEECCCHHHHHHHHHhc-CCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCccE
Confidence 359999999999988777764 44579999999999999999621 12222 357999999999877655678999
Q ss_pred EEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 410 VLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 410 Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
|++|.|-.. +. ....+ ...++++.+.+.|+|||++|....+
T Consensus 230 IIvDl~DP~-~~--------------~~~~L--yT~EFy~~~~~~LkPgGV~V~Qs~s 270 (374)
T PRK01581 230 IIIDFPDPA-TE--------------LLSTL--YTSELFARIATFLTEDGAFVCQSNS 270 (374)
T ss_pred EEEcCCCcc-cc--------------chhhh--hHHHHHHHHHHhcCCCcEEEEecCC
Confidence 999976411 00 00111 1256789999999999998865443
No 158
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=98.88 E-value=3.5e-10 Score=95.65 Aligned_cols=98 Identities=20% Similarity=0.210 Sum_probs=60.8
Q ss_pred EEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccC-CCCCCEEEEcCCCCC
Q 009708 340 VDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS-TVKCDKVLLDAPCSG 418 (528)
Q Consensus 340 LDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~-~~~fD~Vl~D~Pcsg 418 (528)
||+|||+|..+..+++.. +..+++++|+|+.+++.+++++...+..+ ...+..+..+..... .++||.|++-
T Consensus 1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~fD~V~~~----- 73 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLAELGNDN-FERLRFDVLDLFDYDPPESFDLVVAS----- 73 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT----EEEEE--SSS---CCC----SEEEEE-----
T ss_pred CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCCcc-eeEEEeecCChhhcccccccceehhh-----
Confidence 799999999999999885 56899999999999999999998887654 344444443333222 2589999963
Q ss_pred CccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEE
Q 009708 419 LGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVL 461 (528)
Q Consensus 419 ~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~L 461 (528)
+++..- +....+++++.++|||||.|
T Consensus 74 -~vl~~l----------------~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 74 -NVLHHL----------------EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp --TTS------------------S-HHHHHHHHTTT-TSS-EE
T ss_pred -hhHhhh----------------hhHHHHHHHHHHHcCCCCCC
Confidence 222221 11235699999999999986
No 159
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.88 E-value=1.4e-08 Score=110.33 Aligned_cols=119 Identities=16% Similarity=0.198 Sum_probs=85.2
Q ss_pred HHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccc-cc
Q 009708 324 AGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA-DN 402 (528)
Q Consensus 324 s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~-~~ 402 (528)
...+...+.+.++.+|||+|||+|..+..+++. ..+|+|+|+++.+++.++. ..+...+++++++|+.... +.
T Consensus 26 ~~~il~~l~~~~~~~vLDlGcG~G~~~~~la~~---~~~v~giD~s~~~l~~a~~---~~~~~~~i~~~~~d~~~~~~~~ 99 (475)
T PLN02336 26 RPEILSLLPPYEGKSVLELGAGIGRFTGELAKK---AGQVIALDFIESVIKKNES---INGHYKNVKFMCADVTSPDLNI 99 (475)
T ss_pred hhHHHhhcCccCCCEEEEeCCCcCHHHHHHHhh---CCEEEEEeCCHHHHHHHHH---HhccCCceEEEEecccccccCC
Confidence 445556666667889999999999999999986 3689999999999987654 2232234889999986422 12
Q ss_pred CCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCC
Q 009708 403 STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSI 468 (528)
Q Consensus 403 ~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~ 468 (528)
..++||+|+++.+..- .+..++ .++++++.++|||||++++...++
T Consensus 100 ~~~~fD~I~~~~~l~~-------------l~~~~~-------~~~l~~~~r~Lk~gG~l~~~d~~~ 145 (475)
T PLN02336 100 SDGSVDLIFSNWLLMY-------------LSDKEV-------ENLAERMVKWLKVGGYIFFRESCF 145 (475)
T ss_pred CCCCEEEEehhhhHHh-------------CCHHHH-------HHHHHHHHHhcCCCeEEEEEeccC
Confidence 2468999998765421 111222 356999999999999998765443
No 160
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.88 E-value=2.1e-08 Score=102.37 Aligned_cols=114 Identities=18% Similarity=0.162 Sum_probs=78.7
Q ss_pred CCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCC---CEE
Q 009708 334 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKC---DKV 410 (528)
Q Consensus 334 ~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~f---D~V 410 (528)
.++.+|||+|||+|.+|..+++.+....+++++|+|+.+++.+++++......-.+.++++|+.+..... ..+ +.+
T Consensus 62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~-~~~~~~~~~ 140 (301)
T TIGR03438 62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALP-PEPAAGRRL 140 (301)
T ss_pred CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhh-cccccCCeE
Confidence 3567999999999999999998865357899999999999999998876432223777899987643221 222 333
Q ss_pred E--EcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCC
Q 009708 411 L--LDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSI 468 (528)
Q Consensus 411 l--~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~ 468 (528)
+ ++.+ .|. ..+.+. ..+|+.+.+.|+|||.+++..-..
T Consensus 141 ~~~~gs~---~~~----------~~~~e~-------~~~L~~i~~~L~pgG~~lig~d~~ 180 (301)
T TIGR03438 141 GFFPGST---IGN----------FTPEEA-------VAFLRRIRQLLGPGGGLLIGVDLV 180 (301)
T ss_pred EEEeccc---ccC----------CCHHHH-------HHHHHHHHHhcCCCCEEEEeccCC
Confidence 3 2222 122 122332 456999999999999998655443
No 161
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.86 E-value=1.1e-08 Score=103.87 Aligned_cols=94 Identities=15% Similarity=0.116 Sum_probs=78.7
Q ss_pred eecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccc
Q 009708 319 VQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT 398 (528)
Q Consensus 319 ~Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~ 398 (528)
++......++..+.+.++++|||+|||+|..|..+++. ..+|+|+|+|+.+++.+++++...+...+++++++|+..
T Consensus 20 ~d~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~---~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~ 96 (294)
T PTZ00338 20 KNPLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQL---AKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALK 96 (294)
T ss_pred CCHHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHh---CCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhh
Confidence 33344566777778889999999999999999999875 468999999999999999999887754569999999987
Q ss_pred ccccCCCCCCEEEEcCCCCC
Q 009708 399 FADNSTVKCDKVLLDAPCSG 418 (528)
Q Consensus 399 ~~~~~~~~fD~Vl~D~Pcsg 418 (528)
... ..||.|+.|+|+..
T Consensus 97 ~~~---~~~d~VvaNlPY~I 113 (294)
T PTZ00338 97 TEF---PYFDVCVANVPYQI 113 (294)
T ss_pred hcc---cccCEEEecCCccc
Confidence 542 46899999999964
No 162
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=98.86 E-value=1e-08 Score=100.23 Aligned_cols=118 Identities=23% Similarity=0.318 Sum_probs=84.9
Q ss_pred eecchHHHHHHhcCC---CCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCc
Q 009708 319 VQDESAGLVVAVVDP---QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHAD 395 (528)
Q Consensus 319 ~Qd~~s~l~~~~l~~---~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D 395 (528)
+|...+..+...+.. ..+.+|||+|||+|..+..++... +..+++++|+++.+++.+++++. + ++.++.+|
T Consensus 15 ~q~~~~~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~----~-~~~~~~~d 88 (240)
T TIGR02072 15 IQREMAKRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRF-PQAEFIALDISAGMLAQAKTKLS----E-NVQFICGD 88 (240)
T ss_pred HHHHHHHHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhC-CCCcEEEEeChHHHHHHHHHhcC----C-CCeEEecc
Confidence 455444444444332 334689999999999999999874 45689999999999998887654 2 37788999
Q ss_pred cccccccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEc
Q 009708 396 LRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465 (528)
Q Consensus 396 ~~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysT 465 (528)
+...+. ..++||+|+++-... |. .+ ...+|.++.++|+|||.+++++
T Consensus 89 ~~~~~~-~~~~fD~vi~~~~l~------------~~---~~-------~~~~l~~~~~~L~~~G~l~~~~ 135 (240)
T TIGR02072 89 AEKLPL-EDSSFDLIVSNLALQ------------WC---DD-------LSQALSELARVLKPGGLLAFST 135 (240)
T ss_pred hhhCCC-CCCceeEEEEhhhhh------------hc---cC-------HHHHHHHHHHHcCCCcEEEEEe
Confidence 887653 246799999754331 10 01 1346899999999999999765
No 163
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.86 E-value=1.6e-08 Score=103.36 Aligned_cols=85 Identities=13% Similarity=0.092 Sum_probs=67.9
Q ss_pred CCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHc-CCCccEEEEc-Cccccccc---cCCCCCCE
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLH-QVNSVIRTIH-ADLRTFAD---NSTVKCDK 409 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~-g~~~~i~~~~-~D~~~~~~---~~~~~fD~ 409 (528)
.+.+|||+|||+|+....++.... ..+++|+|+++.+++.+++|++.+ ++.++|+++. .|...+.. ...++||+
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~-~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDl 192 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEY-GWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDA 192 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEE
Confidence 457899999999999988887654 579999999999999999999999 8988788764 44433322 12468999
Q ss_pred EEEcCCCCCCc
Q 009708 410 VLLDAPCSGLG 420 (528)
Q Consensus 410 Vl~D~Pcsg~G 420 (528)
|+||||+..++
T Consensus 193 ivcNPPf~~s~ 203 (321)
T PRK11727 193 TLCNPPFHASA 203 (321)
T ss_pred EEeCCCCcCcc
Confidence 99999996543
No 164
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.85 E-value=1.1e-08 Score=99.71 Aligned_cols=114 Identities=21% Similarity=0.256 Sum_probs=94.3
Q ss_pred CeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccC--CCCCCEEEEcC
Q 009708 337 QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS--TVKCDKVLLDA 414 (528)
Q Consensus 337 ~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~--~~~fD~Vl~D~ 414 (528)
..+||+|||.|...+.+|+. .+...++|||+....+..+.+.+.+.|++| +.+++.|+..+.... .++.|.|.++=
T Consensus 50 pi~lEIGfG~G~~l~~~A~~-nP~~nfiGiEi~~~~v~~~l~k~~~~~l~N-lri~~~DA~~~l~~~~~~~sl~~I~i~F 127 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKK-NPEKNFLGIEIRVPGVAKALKKIKELGLKN-LRLLCGDAVEVLDYLIPDGSLDKIYINF 127 (227)
T ss_pred cEEEEECCCCCHHHHHHHHH-CCCCCEEEEEEehHHHHHHHHHHHHcCCCc-EEEEcCCHHHHHHhcCCCCCeeEEEEEC
Confidence 48999999999999999998 667789999999999999999999999985 999999999876654 34899999887
Q ss_pred CCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcC
Q 009708 415 PCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTC 466 (528)
Q Consensus 415 Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTc 466 (528)
|. .|.+....-.++ +|..+|+...+.|||||.|.+.|=
T Consensus 128 PD------------PWpKkRH~KRRl--~~~~fl~~~a~~Lk~gG~l~~aTD 165 (227)
T COG0220 128 PD------------PWPKKRHHKRRL--TQPEFLKLYARKLKPGGVLHFATD 165 (227)
T ss_pred CC------------CCCCcccccccc--CCHHHHHHHHHHccCCCEEEEEec
Confidence 76 243333322333 567789999999999999998874
No 165
>PLN02366 spermidine synthase
Probab=98.83 E-value=4.1e-08 Score=100.16 Aligned_cols=113 Identities=14% Similarity=0.209 Sum_probs=85.6
Q ss_pred CCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcC--C-CccEEEEcCccccccccC-CCCCCEE
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQ--V-NSVIRTIHADLRTFADNS-TVKCDKV 410 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g--~-~~~i~~~~~D~~~~~~~~-~~~fD~V 410 (528)
...+||++|||.|+....+++. .+..+|+.||+++..++.+++.+...+ + +.+++++.+|+..+.... .++||+|
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 4569999999999999999876 445689999999999999999886542 3 347999999998876543 4689999
Q ss_pred EEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcC
Q 009708 411 LLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTC 466 (528)
Q Consensus 411 l~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTc 466 (528)
++|.+-.. |. . .. -...++++.+.+.|+|||+++.-.-
T Consensus 170 i~D~~dp~-~~-----~-------~~-----L~t~ef~~~~~~~L~pgGvlv~q~~ 207 (308)
T PLN02366 170 IVDSSDPV-GP-----A-------QE-----LFEKPFFESVARALRPGGVVCTQAE 207 (308)
T ss_pred EEcCCCCC-Cc-----h-------hh-----hhHHHHHHHHHHhcCCCcEEEECcC
Confidence 99975421 11 0 01 1235678999999999999975433
No 166
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=98.82 E-value=1.5e-08 Score=104.50 Aligned_cols=103 Identities=17% Similarity=0.171 Sum_probs=78.2
Q ss_pred CCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEc
Q 009708 334 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLD 413 (528)
Q Consensus 334 ~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D 413 (528)
.++.+|||+|||+|..+..+++..+ ..+++++|+|+.+++.++++... . +++++.+|+.++.. ..+.||+|++.
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~-~~~VtgVD~S~~mL~~A~~k~~~---~-~i~~i~gD~e~lp~-~~~sFDvVIs~ 185 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEPL---K-ECKIIEGDAEDLPF-PTDYADRYVSA 185 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHhhhc---c-CCeEEeccHHhCCC-CCCceeEEEEc
Confidence 4678999999999999999988753 47899999999999999987642 2 37789999987543 23679999974
Q ss_pred CCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 414 APCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 414 ~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
.. +..-++ ...+|+++.++|||||++++.
T Consensus 186 ~~------L~~~~d----------------~~~~L~e~~rvLkPGG~LvIi 214 (340)
T PLN02490 186 GS------IEYWPD----------------PQRGIKEAYRVLKIGGKACLI 214 (340)
T ss_pred Ch------hhhCCC----------------HHHHHHHHHHhcCCCcEEEEE
Confidence 22 111111 123699999999999998765
No 167
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=98.82 E-value=7.9e-09 Score=108.69 Aligned_cols=116 Identities=17% Similarity=0.266 Sum_probs=87.3
Q ss_pred HHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccC-C-
Q 009708 327 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS-T- 404 (528)
Q Consensus 327 ~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~-~- 404 (528)
+.++++...+..++|+|||+|.+++.+|+. ..+|+|||++++.+.-|+.|++.+|++| .+|+++.+.+..... .
T Consensus 375 i~e~~~l~~~k~llDv~CGTG~iglala~~---~~~ViGvEi~~~aV~dA~~nA~~NgisN-a~Fi~gqaE~~~~sl~~~ 450 (534)
T KOG2187|consen 375 IGEWAGLPADKTLLDVCCGTGTIGLALARG---VKRVIGVEISPDAVEDAEKNAQINGISN-ATFIVGQAEDLFPSLLTP 450 (534)
T ss_pred HHHHhCCCCCcEEEEEeecCCceehhhhcc---ccceeeeecChhhcchhhhcchhcCccc-eeeeecchhhccchhccc
Confidence 556677888899999999999999999975 5799999999999999999999999997 899999666543322 1
Q ss_pred --CCCC-EEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCch
Q 009708 405 --VKCD-KVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPE 471 (528)
Q Consensus 405 --~~fD-~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~ 471 (528)
..-+ ++++|||-.|.-. . +++ +.+..+.--+++|.+|..+..
T Consensus 451 ~~~~~~~v~iiDPpR~Glh~-------------~-----------~ik-~l~~~~~~~rlvyvSCn~~t~ 495 (534)
T KOG2187|consen 451 CCDSETLVAIIDPPRKGLHM-------------K-----------VIK-ALRAYKNPRRLVYVSCNPHTA 495 (534)
T ss_pred CCCCCceEEEECCCcccccH-------------H-----------HHH-HHHhccCccceEEEEcCHHHh
Confidence 2345 7889999865221 1 122 222223234799999998764
No 168
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=98.82 E-value=5.3e-08 Score=89.74 Aligned_cols=125 Identities=25% Similarity=0.337 Sum_probs=92.3
Q ss_pred CCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcC-ccccccc-------cCCC
Q 009708 334 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHA-DLRTFAD-------NSTV 405 (528)
Q Consensus 334 ~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~-D~~~~~~-------~~~~ 405 (528)
.|+++|||+||+||.++..+-++.++.|.|.|||+-. -....+ ++++++ |+++... ....
T Consensus 68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh-----------~~p~~G-a~~i~~~dvtdp~~~~ki~e~lp~r 135 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH-----------IEPPEG-ATIIQGNDVTDPETYRKIFEALPNR 135 (232)
T ss_pred CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeee-----------ccCCCC-cccccccccCCHHHHHHHHHhCCCC
Confidence 4689999999999999999999988999999999842 223333 455555 7665321 1246
Q ss_pred CCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchhhHHHHHHHHhhC
Q 009708 406 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRH 484 (528)
Q Consensus 406 ~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~Ene~~v~~~l~~~ 484 (528)
..|+||.|.-.-.+|+ ...+-..+.++-...|.-|..+++|+|.+| |.+...+.+...+.-|..+
T Consensus 136 ~VdvVlSDMapnaTGv-----------r~~Dh~~~i~LC~s~l~~al~~~~p~g~fv---cK~w~g~e~~~l~r~l~~~ 200 (232)
T KOG4589|consen 136 PVDVVLSDMAPNATGV-----------RIRDHYRSIELCDSALLFALTLLIPNGSFV---CKLWDGSEEALLQRRLQAV 200 (232)
T ss_pred cccEEEeccCCCCcCc-----------chhhHHHHHHHHHHHHHHhhhhcCCCcEEE---EEEecCCchHHHHHHHHHH
Confidence 7999999976667776 234555666777778888999999999999 8877766665566555544
No 169
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.81 E-value=1.3e-08 Score=102.73 Aligned_cols=90 Identities=22% Similarity=0.276 Sum_probs=75.6
Q ss_pred HHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCC-
Q 009708 327 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTV- 405 (528)
Q Consensus 327 ~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~- 405 (528)
+.+.+.+++|+.+||++||.||.|..+++.+++.++|+|+|+++.+++.+++++.. .++++++++|+.++......
T Consensus 11 vl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~---~~ri~~i~~~f~~l~~~l~~~ 87 (296)
T PRK00050 11 VVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP---FGRFTLVHGNFSNLKEVLAEG 87 (296)
T ss_pred HHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc---CCcEEEEeCCHHHHHHHHHcC
Confidence 45567788999999999999999999999876678999999999999999988765 34699999999987543322
Q ss_pred --CCCEEEEcCCCCCC
Q 009708 406 --KCDKVLLDAPCSGL 419 (528)
Q Consensus 406 --~fD~Vl~D~Pcsg~ 419 (528)
+||.|++|.=+|+.
T Consensus 88 ~~~vDgIl~DLGvSs~ 103 (296)
T PRK00050 88 LGKVDGILLDLGVSSP 103 (296)
T ss_pred CCccCEEEECCCcccc
Confidence 79999999777664
No 170
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.81 E-value=5.4e-09 Score=99.48 Aligned_cols=115 Identities=20% Similarity=0.280 Sum_probs=87.2
Q ss_pred HHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCC-ccEEEEcCccccccccC-CC
Q 009708 328 VAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVN-SVIRTIHADLRTFADNS-TV 405 (528)
Q Consensus 328 ~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~-~~i~~~~~D~~~~~~~~-~~ 405 (528)
+..+.++.|++|||.|.|-|..++.++++ +..+|+.+|.+|..++.+.-|-=..++. ..|+++.+|+.++.+.. .+
T Consensus 127 v~~V~~~~G~rVLDtC~GLGYtAi~a~~r--GA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~ 204 (287)
T COG2521 127 VELVKVKRGERVLDTCTGLGYTAIEALER--GAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDE 204 (287)
T ss_pred hheeccccCCEeeeeccCccHHHHHHHHc--CCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCcc
Confidence 44566778999999999999999998875 4459999999999998877653222221 24789999999887655 56
Q ss_pred CCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEE
Q 009708 406 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463 (528)
Q Consensus 406 ~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvy 463 (528)
+||.|+-|||-.+... ++ .-.++-++.+++|||||.|+-
T Consensus 205 sfDaIiHDPPRfS~Ag-----------------eL--YseefY~El~RiLkrgGrlFH 243 (287)
T COG2521 205 SFDAIIHDPPRFSLAG-----------------EL--YSEEFYRELYRILKRGGRLFH 243 (287)
T ss_pred ccceEeeCCCccchhh-----------------hH--hHHHHHHHHHHHcCcCCcEEE
Confidence 7999999999843211 11 113567888999999999883
No 171
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=98.80 E-value=1.8e-08 Score=95.02 Aligned_cols=112 Identities=24% Similarity=0.330 Sum_probs=84.2
Q ss_pred cchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccc
Q 009708 321 DESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 400 (528)
Q Consensus 321 d~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~ 400 (528)
.++..+++.+ .+.+-..|.|+|||||..|..++++.+ ...|+|+|-|+.|++.+++. +.+ ++|..+|+..+.
T Consensus 17 RPa~dLla~V-p~~~~~~v~DLGCGpGnsTelL~~RwP-~A~i~GiDsS~~Mla~Aa~r-----lp~-~~f~~aDl~~w~ 88 (257)
T COG4106 17 RPARDLLARV-PLERPRRVVDLGCGPGNSTELLARRWP-DAVITGIDSSPAMLAKAAQR-----LPD-ATFEEADLRTWK 88 (257)
T ss_pred CcHHHHHhhC-CccccceeeecCCCCCHHHHHHHHhCC-CCeEeeccCCHHHHHHHHHh-----CCC-CceecccHhhcC
Confidence 3444444443 445567999999999999999999964 78999999999999988654 343 789999999886
Q ss_pred ccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 401 DNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 401 ~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
+. ..+|+|+.|+-. .|..+ .-++|.+.+..|.|||.|..-
T Consensus 89 p~--~~~dllfaNAvl------------qWlpd----------H~~ll~rL~~~L~Pgg~LAVQ 128 (257)
T COG4106 89 PE--QPTDLLFANAVL------------QWLPD----------HPELLPRLVSQLAPGGVLAVQ 128 (257)
T ss_pred CC--Cccchhhhhhhh------------hhccc----------cHHHHHHHHHhhCCCceEEEE
Confidence 54 579999987654 22211 124588889999999999843
No 172
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=98.80 E-value=6.4e-07 Score=89.55 Aligned_cols=200 Identities=18% Similarity=0.143 Sum_probs=118.8
Q ss_pred ChHHHHHHHHHHhC-HHHHHHHHHhcCCCCCeEEE------EcCCCCC---CHHHHHHHHhhcCCCCCceecccCCceEE
Q 009708 229 HPVWMVRRWTKYLG-QEEAIKLMVWNNSDPSFSLR------ANSRKGV---TRADLVMQLNLLKLQVPHELSLHLDEFIR 298 (528)
Q Consensus 229 ~P~w~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~r------vn~~k~~---~~~~~~~~L~~~~~~~~~~~~~~~~~~~~ 298 (528)
+|..+.+.+...+| -....+.++.+....+..+- +...... ..+.+.+.|.. + .|+.+.|+.-..+.
T Consensus 17 l~~~~~~~~~~~~g~~~~w~~~l~~lp~~~~~~~~l~~~v~i~~~~~l~~~~~~~l~~~l~~--l-~PWRKGPf~l~gi~ 93 (315)
T PF08003_consen 17 LPAQLAAWLERRHGDLPRWQEALEQLPDLEPSSVDLSDSVTIGSASDLSAEQRQQLEQLLKA--L-MPWRKGPFSLFGIH 93 (315)
T ss_pred hHHHHHHHHHhccCCHHHHHHHHHHcCCCCCcEEecCCcEEeCCCCCCCHHHHHHHHHHHHh--h-CCcccCCcccCCEe
Confidence 56666555555566 34566666766654443332 2221111 24455566665 3 36666665433333
Q ss_pred eeCCccchhcccccccceeEeecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHH
Q 009708 299 VKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNE 378 (528)
Q Consensus 299 ~~~~~~~~~~~~~~~~G~~~~Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~ 378 (528)
+.+ ++. -|---..+...+..-.|.+|||+|||.|..+..|+.. +...|+|+|.+...+...+-
T Consensus 94 IDt--------EWr-------Sd~KW~rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~--GA~~ViGiDP~~lf~~QF~~ 156 (315)
T PF08003_consen 94 IDT--------EWR-------SDWKWDRLLPHLPDLKGKRVLDIGCNNGYYSFRMLGR--GAKSVIGIDPSPLFYLQFEA 156 (315)
T ss_pred ecc--------ccc-------ccchHHHHHhhhCCcCCCEEEEecCCCcHHHHHHhhc--CCCEEEEECCChHHHHHHHH
Confidence 322 110 0112233444454556899999999999999999875 45689999999888776655
Q ss_pred HHHHcCCCccEEEEcCccccccccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCC
Q 009708 379 TAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPG 458 (528)
Q Consensus 379 n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpG 458 (528)
..+-.|.+..+..+..-+.+++. .+.||.||+ .|++=+.. ++ ...|.+....|++|
T Consensus 157 i~~~lg~~~~~~~lplgvE~Lp~--~~~FDtVF~------MGVLYHrr------~P----------l~~L~~Lk~~L~~g 212 (315)
T PF08003_consen 157 IKHFLGQDPPVFELPLGVEDLPN--LGAFDTVFS------MGVLYHRR------SP----------LDHLKQLKDSLRPG 212 (315)
T ss_pred HHHHhCCCccEEEcCcchhhccc--cCCcCEEEE------eeehhccC------CH----------HHHHHHHHHhhCCC
Confidence 55555655434333233344443 478999995 46653321 22 22478888999999
Q ss_pred CEEEEEcCCCCchh
Q 009708 459 GVLVYSTCSIDPEE 472 (528)
Q Consensus 459 G~LvysTcs~~~~E 472 (528)
|.||.-|-.+..++
T Consensus 213 GeLvLETlvi~g~~ 226 (315)
T PF08003_consen 213 GELVLETLVIDGDE 226 (315)
T ss_pred CEEEEEEeeecCCC
Confidence 99998887655443
No 173
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.79 E-value=3.9e-08 Score=95.68 Aligned_cols=110 Identities=12% Similarity=0.111 Sum_probs=76.7
Q ss_pred CCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCC--------------CccEEEEcCccc
Q 009708 332 DPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQV--------------NSVIRTIHADLR 397 (528)
Q Consensus 332 ~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~--------------~~~i~~~~~D~~ 397 (528)
.+.++.+|||+|||.|..++++|++ +..|+|||+|+.+++.+.. ..++ ...|++.++|+.
T Consensus 34 ~~~~~~rvL~~gCG~G~da~~LA~~---G~~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~ 107 (218)
T PRK13255 34 ALPAGSRVLVPLCGKSLDMLWLAEQ---GHEVLGVELSELAVEQFFA---ENGLTPQTRQSGEFEHYQAGEITIYCGDFF 107 (218)
T ss_pred CCCCCCeEEEeCCCChHhHHHHHhC---CCeEEEEccCHHHHHHHHH---HcCCCccccccccccccccCceEEEECccc
Confidence 3456779999999999999999985 5689999999999998642 2222 234888999999
Q ss_pred cccccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 398 TFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 398 ~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
++.......||.|+-= -| +..- .++ ...+.+..+.++|+|||++++.|-.
T Consensus 108 ~l~~~~~~~fd~v~D~-~~-----~~~l-------~~~-------~R~~~~~~l~~lL~pgG~~~l~~~~ 157 (218)
T PRK13255 108 ALTAADLADVDAVYDR-AA-----LIAL-------PEE-------MRERYVQQLAALLPAGCRGLLVTLD 157 (218)
T ss_pred CCCcccCCCeeEEEeh-Hh-----HhhC-------CHH-------HHHHHHHHHHHHcCCCCeEEEEEEE
Confidence 8754433578888731 11 1111 111 2344688999999999975554433
No 174
>KOG2730 consensus Methylase [General function prediction only]
Probab=98.79 E-value=4.7e-09 Score=98.99 Aligned_cols=109 Identities=28% Similarity=0.339 Sum_probs=83.2
Q ss_pred ccceeEeecc-hHHHHHHhc-CCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEE
Q 009708 313 KEGLCAVQDE-SAGLVVAVV-DPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIR 390 (528)
Q Consensus 313 ~~G~~~~Qd~-~s~l~~~~l-~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~ 390 (528)
.+|+|.+--+ .+..++... ..-.-+.|+|.+||.||-|++.|.. ...|+++|++|-++..++.|++-+|++++|+
T Consensus 70 ~e~wfsvTpe~ia~~iA~~v~~~~~~~~iidaf~g~gGntiqfa~~---~~~VisIdiDPikIa~AkhNaeiYGI~~rIt 146 (263)
T KOG2730|consen 70 REGWFSVTPEKIAEHIANRVVACMNAEVIVDAFCGVGGNTIQFALQ---GPYVIAIDIDPVKIACARHNAEVYGVPDRIT 146 (263)
T ss_pred ccceEEeccHHHHHHHHHHHHHhcCcchhhhhhhcCCchHHHHHHh---CCeEEEEeccHHHHHHHhccceeecCCceeE
Confidence 3666666432 233333221 1113468999999999999999876 4689999999999999999999999999999
Q ss_pred EEcCccccccccC---CCCCCEEEEcCCCCCCccccC
Q 009708 391 TIHADLRTFADNS---TVKCDKVLLDAPCSGLGVLSK 424 (528)
Q Consensus 391 ~~~~D~~~~~~~~---~~~fD~Vl~D~Pcsg~G~~~~ 424 (528)
++++|+.+..... ...+|.|+.-||++|.|..+.
T Consensus 147 FI~GD~ld~~~~lq~~K~~~~~vf~sppwggp~y~~~ 183 (263)
T KOG2730|consen 147 FICGDFLDLASKLKADKIKYDCVFLSPPWGGPSYLRA 183 (263)
T ss_pred EEechHHHHHHHHhhhhheeeeeecCCCCCCcchhhh
Confidence 9999998865432 345779999999999887543
No 175
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=98.78 E-value=4.1e-08 Score=98.81 Aligned_cols=96 Identities=17% Similarity=0.212 Sum_probs=71.9
Q ss_pred CCCCeEEEeCCccchHHHHHHHHcCCC--cEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEE
Q 009708 334 QPGQSIVDCCAAPGGKTLYMASCLSGQ--GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVL 411 (528)
Q Consensus 334 ~~g~~VLDl~aG~G~kt~~la~~~~~~--~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl 411 (528)
.++.+|||+|||+|..+..+++.++.. ..|+|+|+|+.+++.++++. .+ +.++.+|+.+++. ..++||+|+
T Consensus 84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~-----~~-~~~~~~d~~~lp~-~~~sfD~I~ 156 (272)
T PRK11088 84 EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY-----PQ-VTFCVASSHRLPF-ADQSLDAII 156 (272)
T ss_pred CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC-----CC-CeEEEeecccCCC-cCCceeEEE
Confidence 355789999999999999998875432 37999999999999987642 33 6788899887653 246899998
Q ss_pred EcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEc
Q 009708 412 LDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465 (528)
Q Consensus 412 ~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysT 465 (528)
+.- . |. .+++..++|||||+|+..+
T Consensus 157 ~~~--------~--~~-------------------~~~e~~rvLkpgG~li~~~ 181 (272)
T PRK11088 157 RIY--------A--PC-------------------KAEELARVVKPGGIVITVT 181 (272)
T ss_pred Eec--------C--CC-------------------CHHHHHhhccCCCEEEEEe
Confidence 521 0 10 1456778999999999765
No 176
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.77 E-value=4.5e-08 Score=98.07 Aligned_cols=112 Identities=20% Similarity=0.197 Sum_probs=77.1
Q ss_pred CCCCeEEEeCCccch----HHHHHHHHcCC----CcEEEEEcCChHHHHHHHHHHH----HcC-----------------
Q 009708 334 QPGQSIVDCCAAPGG----KTLYMASCLSG----QGLVYAIDINKGRLRILNETAK----LHQ----------------- 384 (528)
Q Consensus 334 ~~g~~VLDl~aG~G~----kt~~la~~~~~----~~~v~avD~s~~~l~~~~~n~~----~~g----------------- 384 (528)
.++.+|||+|||+|. .++.+++.... ..+|+|+|+|+.+++.|++.+- ..+
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~ 177 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY 177 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence 345699999999996 45555554432 4689999999999999988531 001
Q ss_pred -----CCccEEEEcCccccccccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCC
Q 009708 385 -----VNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGG 459 (528)
Q Consensus 385 -----~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG 459 (528)
+.+.|++.++|+.+... ..++||+|+| .. ++.. .+ ...+.++++...+.|+|||
T Consensus 178 ~v~~~ir~~V~F~~~dl~~~~~-~~~~fD~I~c----rn--vl~y-------f~-------~~~~~~~l~~l~~~L~pGG 236 (264)
T smart00138 178 RVKPELKERVRFAKHNLLAESP-PLGDFDLIFC----RN--VLIY-------FD-------EPTQRKLLNRFAEALKPGG 236 (264)
T ss_pred EEChHHhCcCEEeeccCCCCCC-ccCCCCEEEe----ch--hHHh-------CC-------HHHHHHHHHHHHHHhCCCe
Confidence 22358889999987653 2468999996 11 1110 11 1235567999999999999
Q ss_pred EEEEEcC
Q 009708 460 VLVYSTC 466 (528)
Q Consensus 460 ~LvysTc 466 (528)
+|+....
T Consensus 237 ~L~lg~~ 243 (264)
T smart00138 237 YLFLGHS 243 (264)
T ss_pred EEEEECc
Confidence 9997543
No 177
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.75 E-value=1.1e-07 Score=107.62 Aligned_cols=89 Identities=16% Similarity=0.142 Sum_probs=72.4
Q ss_pred HhcCC-CCCCeEEEeCCccchHHHHHHHHcC-----------------------------------------CCcEEEEE
Q 009708 329 AVVDP-QPGQSIVDCCAAPGGKTLYMASCLS-----------------------------------------GQGLVYAI 366 (528)
Q Consensus 329 ~~l~~-~~g~~VLDl~aG~G~kt~~la~~~~-----------------------------------------~~~~v~av 366 (528)
.+... .++..++|.+||+|++.+.+|.... ...+|+|+
T Consensus 183 ~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~ 262 (702)
T PRK11783 183 LRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGS 262 (702)
T ss_pred HHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEE
Confidence 33343 5678999999999999998876311 12369999
Q ss_pred cCChHHHHHHHHHHHHcCCCccEEEEcCccccccccC-CCCCCEEEEcCCCC
Q 009708 367 DINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS-TVKCDKVLLDAPCS 417 (528)
Q Consensus 367 D~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~-~~~fD~Vl~D~Pcs 417 (528)
|+++.+++.+++|++.+|+.+.+++.++|+.++.... .++||+|++|||+.
T Consensus 263 Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg 314 (702)
T PRK11783 263 DIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYG 314 (702)
T ss_pred ECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCc
Confidence 9999999999999999999888999999998875432 25699999999993
No 178
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.74 E-value=1.4e-08 Score=95.85 Aligned_cols=107 Identities=28% Similarity=0.245 Sum_probs=69.1
Q ss_pred CCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CCC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 405 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~~ 405 (528)
.+.+|||+||+|||++..++++.+..++|+|+|+.+. ...++ +..+++|.++.... ...
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~~~~-~~~i~~d~~~~~~~~~i~~~~~~~~~ 90 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DPLQN-VSFIQGDITNPENIKDIRKLLPESGE 90 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS-TT-EEBTTGGGEEEEHSHHGGGSHGTTTC
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------ccccc-eeeeecccchhhHHHhhhhhcccccc
Confidence 4589999999999999999987545689999999877 22233 67778887653211 125
Q ss_pred CCCEEEEcC--CCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcC
Q 009708 406 KCDKVLLDA--PCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTC 466 (528)
Q Consensus 406 ~fD~Vl~D~--Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTc 466 (528)
+||+|++|. +++|... .+ -.....+....|.-|..+|++||.+|.-+.
T Consensus 91 ~~dlv~~D~~~~~~g~~~----------~d---~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~ 140 (181)
T PF01728_consen 91 KFDLVLSDMAPNVSGDRN----------ID---EFISIRLILSQLLLALELLKPGGTFVIKVF 140 (181)
T ss_dssp SESEEEE-------SSHH----------SS---HHHHHHHHHHHHHHHHHHHCTTEEEEEEES
T ss_pred CcceeccccccCCCCchh----------hH---HHHHHHHHHHHHHHHHhhhcCCCEEEEEec
Confidence 899999997 4433211 11 222234445557788899999999985443
No 179
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.74 E-value=3.6e-08 Score=98.44 Aligned_cols=90 Identities=18% Similarity=0.261 Sum_probs=74.2
Q ss_pred eecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccc
Q 009708 319 VQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT 398 (528)
Q Consensus 319 ~Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~ 398 (528)
+.......++..++..++++|||+|||+|..|..+++. ..+|+++|+++.+++.+++++.. .. +++++++|+..
T Consensus 13 ~d~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~---~~~v~~vEid~~~~~~l~~~~~~--~~-~v~ii~~D~~~ 86 (258)
T PRK14896 13 IDDRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKR---AKKVYAIELDPRLAEFLRDDEIA--AG-NVEIIEGDALK 86 (258)
T ss_pred CCHHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHhcc--CC-CEEEEEecccc
Confidence 33444566777778888999999999999999999986 36899999999999999988764 33 48999999987
Q ss_pred ccccCCCCCCEEEEcCCCC
Q 009708 399 FADNSTVKCDKVLLDAPCS 417 (528)
Q Consensus 399 ~~~~~~~~fD~Vl~D~Pcs 417 (528)
+.. ..||.|++|+|+.
T Consensus 87 ~~~---~~~d~Vv~NlPy~ 102 (258)
T PRK14896 87 VDL---PEFNKVVSNLPYQ 102 (258)
T ss_pred CCc---hhceEEEEcCCcc
Confidence 652 3589999999984
No 180
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.74 E-value=9.3e-08 Score=105.11 Aligned_cols=170 Identities=14% Similarity=0.126 Sum_probs=104.5
Q ss_pred cceeEeecchHHHHHHhcCCC-------CCCeEEEeCCccchHHHHHHHHcCC-------CcEEEEEcCChHHHHHHHHH
Q 009708 314 EGLCAVQDESAGLVVAVVDPQ-------PGQSIVDCCAAPGGKTLYMASCLSG-------QGLVYAIDINKGRLRILNET 379 (528)
Q Consensus 314 ~G~~~~Qd~~s~l~~~~l~~~-------~g~~VLDl~aG~G~kt~~la~~~~~-------~~~v~avD~s~~~l~~~~~n 379 (528)
.|.|+....-+.+++..+... .+.+|||.|||+|++.+.++..+.. ...++|+|+++..+..++.|
T Consensus 3 ~GqfyTP~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~ 82 (524)
T TIGR02987 3 YGTFFTPPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKL 82 (524)
T ss_pred CcccCCcHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHH
Confidence 467777666677777655322 2358999999999999999887631 24789999999999999999
Q ss_pred HHHcCCCccEEEEcCcccccc----ccCCCCCCEEEEcCCCCCCccccCCch-------hhccCCH-------HHHH---
Q 009708 380 AKLHQVNSVIRTIHADLRTFA----DNSTVKCDKVLLDAPCSGLGVLSKRAD-------LRWNRRL-------EDME--- 438 (528)
Q Consensus 380 ~~~~g~~~~i~~~~~D~~~~~----~~~~~~fD~Vl~D~Pcsg~G~~~~~pd-------~~~~~~~-------~~~~--- 438 (528)
+...+.- .+.+.+.|..... ....+.||+|+.|||+.........-. ..+.... ..+.
T Consensus 83 l~~~~~~-~~~i~~~d~l~~~~~~~~~~~~~fD~IIgNPPy~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (524)
T TIGR02987 83 LGEFALL-EINVINFNSLSYVLLNIESYLDLFDIVITNPPYGRLKPDKKELTNIETLEYEKYIDFLKEFDDLLSRVLPYS 161 (524)
T ss_pred HhhcCCC-CceeeecccccccccccccccCcccEEEeCCCccccCcchhhhhhhhhhhhhhhhHHHHHHHHHHHhhcchh
Confidence 9887622 2455556544321 112357999999999965432111000 0000000 0000
Q ss_pred -------HHHHHHHHH-HHHHhccCcCCCEEEEEcCC-CCchhhHHHHHHHHhhC
Q 009708 439 -------ELKILQDEL-LDAASLLVKPGGVLVYSTCS-IDPEENEERVEAFLLRH 484 (528)
Q Consensus 439 -------~l~~~q~~l-L~~a~~~LkpGG~LvysTcs-~~~~Ene~~v~~~l~~~ 484 (528)
.....+..+ ++.+.++|++||++.+.+-+ +........+..++.++
T Consensus 162 ~~~~~~~g~~~~y~~~f~~~~~~lL~~~G~~~~I~P~s~l~~~~~~~lR~~ll~~ 216 (524)
T TIGR02987 162 DPIRKYAGVGTEYSRVFEEISLEIANKNGYVSIISPASWLGDKTGENLREYIFNN 216 (524)
T ss_pred hhhcccCCcccHHHHHHHHHHHHhcCCCCEEEEEEChHHhcCccHHHHHHHHHhC
Confidence 011233444 47799999999999876654 33334444566666544
No 181
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.72 E-value=3.5e-08 Score=99.29 Aligned_cols=89 Identities=21% Similarity=0.279 Sum_probs=71.1
Q ss_pred cchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccc
Q 009708 321 DESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 400 (528)
Q Consensus 321 d~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~ 400 (528)
......++..+++.++++|||+|||+|..|..+++. ..+|+|+|+++.+++.+++++.. + +++++++|+..+.
T Consensus 28 ~~i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~---~~~v~avE~d~~~~~~~~~~~~~---~-~v~~i~~D~~~~~ 100 (272)
T PRK00274 28 ENILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLER---AAKVTAVEIDRDLAPILAETFAE---D-NLTIIEGDALKVD 100 (272)
T ss_pred HHHHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHh---CCcEEEEECCHHHHHHHHHhhcc---C-ceEEEEChhhcCC
Confidence 334455666778888999999999999999999987 24899999999999999987642 3 4899999998865
Q ss_pred ccCCCCCCEEEEcCCCC
Q 009708 401 DNSTVKCDKVLLDAPCS 417 (528)
Q Consensus 401 ~~~~~~fD~Vl~D~Pcs 417 (528)
... ..+|.|+.|+|+.
T Consensus 101 ~~~-~~~~~vv~NlPY~ 116 (272)
T PRK00274 101 LSE-LQPLKVVANLPYN 116 (272)
T ss_pred HHH-cCcceEEEeCCcc
Confidence 321 1159999999984
No 182
>PRK10742 putative methyltransferase; Provisional
Probab=98.69 E-value=8.1e-08 Score=93.81 Aligned_cols=91 Identities=21% Similarity=0.160 Sum_probs=78.4
Q ss_pred HHHHHHhcCCCCCC--eEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHc------CC--CccEEEEc
Q 009708 324 AGLVVAVVDPQPGQ--SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLH------QV--NSVIRTIH 393 (528)
Q Consensus 324 s~l~~~~l~~~~g~--~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~------g~--~~~i~~~~ 393 (528)
.+.++.++++++|. +|||++||.|..++.++.+ +++|+++|.++.....+++++++. +. ..++++++
T Consensus 75 ~~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~---G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~ 151 (250)
T PRK10742 75 GEAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIH 151 (250)
T ss_pred ccHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEe
Confidence 46778888888888 8999999999999999987 567999999999999999999996 32 24589999
Q ss_pred CccccccccCCCCCCEEEEcCCCC
Q 009708 394 ADLRTFADNSTVKCDKVLLDAPCS 417 (528)
Q Consensus 394 ~D~~~~~~~~~~~fD~Vl~D~Pcs 417 (528)
+|...+.......||+|++|||+-
T Consensus 152 ~da~~~L~~~~~~fDVVYlDPMfp 175 (250)
T PRK10742 152 ASSLTALTDITPRPQVVYLDPMFP 175 (250)
T ss_pred CcHHHHHhhCCCCCcEEEECCCCC
Confidence 999988765556799999999993
No 183
>PLN02823 spermine synthase
Probab=98.69 E-value=6e-07 Score=92.68 Aligned_cols=114 Identities=13% Similarity=0.164 Sum_probs=84.3
Q ss_pred CCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcC---CCccEEEEcCccccccccCCCCCCEEEE
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQ---VNSVIRTIHADLRTFADNSTVKCDKVLL 412 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g---~~~~i~~~~~D~~~~~~~~~~~fD~Vl~ 412 (528)
..+||.+|+|.|+.+..+++. .+..+|++||+++..++.+++.+...+ -+.+++++.+|+..+.....++||+|++
T Consensus 104 pk~VLiiGgG~G~~~re~l~~-~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~ 182 (336)
T PLN02823 104 PKTVFIMGGGEGSTAREVLRH-KTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG 182 (336)
T ss_pred CCEEEEECCCchHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence 358999999999999888875 335689999999999999999876432 1357999999999987655678999999
Q ss_pred cCCCCC-CccccCCchhhccCCHHHHHHHHHHHHHHHH-HHhccCcCCCEEEEEcCC
Q 009708 413 DAPCSG-LGVLSKRADLRWNRRLEDMEELKILQDELLD-AASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 413 D~Pcsg-~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~-~a~~~LkpGG~LvysTcs 467 (528)
|.+-.. .|. + .. -...++++ .+.+.|+|||+++.-..+
T Consensus 183 D~~dp~~~~~----~--------~~-----Lyt~eF~~~~~~~~L~p~Gvlv~q~~s 222 (336)
T PLN02823 183 DLADPVEGGP----C--------YQ-----LYTKSFYERIVKPKLNPGGIFVTQAGP 222 (336)
T ss_pred cCCCccccCc----c--------hh-----hccHHHHHHHHHHhcCCCcEEEEeccC
Confidence 964211 111 0 00 11235676 788999999998865433
No 184
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.68 E-value=2.1e-07 Score=85.56 Aligned_cols=138 Identities=20% Similarity=0.297 Sum_probs=99.9
Q ss_pred CCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEcCC
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAP 415 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~P 415 (528)
...++++|||+|..+.++++.+.+.....+.|++|.+++...+.++.+++. +++++.|+..-... ++.|+++.|||
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~--~~~V~tdl~~~l~~--~~VDvLvfNPP 119 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVH--IDVVRTDLLSGLRN--ESVDVLVFNPP 119 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCc--cceeehhHHhhhcc--CCccEEEECCC
Confidence 458999999999999999999888888999999999999999999999876 78899998776544 78999999999
Q ss_pred CCCC--ccc-cCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchhhHHHHHHHHhhC
Q 009708 416 CSGL--GVL-SKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRH 484 (528)
Q Consensus 416 csg~--G~~-~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~Ene~~v~~~l~~~ 484 (528)
+--+ +-+ ...-+..|.-. ......-.+++.+.-.+|.|.|.++..+|.-+. .+.+-.+++..
T Consensus 120 YVpt~~~~i~~~~i~~a~aGG----~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~---p~ei~k~l~~~ 184 (209)
T KOG3191|consen 120 YVPTSDEEIGDEGIASAWAGG----KDGREVTDRLLPQVPDILSPRGVFYLVALRANK---PKEILKILEKK 184 (209)
T ss_pred cCcCCcccchhHHHHHHHhcC----cchHHHHHHHHhhhhhhcCcCceEEeeehhhcC---HHHHHHHHhhc
Confidence 8221 100 00111123211 122233456788899999999998887775332 23344566654
No 185
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=98.67 E-value=7.9e-08 Score=104.31 Aligned_cols=170 Identities=23% Similarity=0.260 Sum_probs=116.9
Q ss_pred cceeEeecchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCC---CcEEEEEcCChHHHHHHHHHHHHcCCCccEE
Q 009708 314 EGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSG---QGLVYAIDINKGRLRILNETAKLHQVNSVIR 390 (528)
Q Consensus 314 ~G~~~~Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~---~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~ 390 (528)
.|.|+.....+.+++.++.+.+..+|+|.|||+|+..+..+..+.. ...++|.|+++.....++.|+-.+|+...+.
T Consensus 165 ~GEfyTP~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~ 244 (489)
T COG0286 165 AGEFYTPREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDAN 244 (489)
T ss_pred CCccCChHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCcccc
Confidence 3888888888999999999988899999999999999988888753 3679999999999999999999999874355
Q ss_pred EEcCcccccccc----CCCCCCEEEEcCCCCCCccccCC-c-hhhccCCHHHHHHHH-HHHHHHHHHHhccCcCCCEEE-
Q 009708 391 TIHADLRTFADN----STVKCDKVLLDAPCSGLGVLSKR-A-DLRWNRRLEDMEELK-ILQDELLDAASLLVKPGGVLV- 462 (528)
Q Consensus 391 ~~~~D~~~~~~~----~~~~fD~Vl~D~Pcsg~G~~~~~-p-d~~~~~~~~~~~~l~-~~q~~lL~~a~~~LkpGG~Lv- 462 (528)
..++|...-+.. ...+||.|+.+||.++.+...-. . +-.|+.......... .-...++.+....|+|||+..
T Consensus 245 i~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aai 324 (489)
T COG0286 245 IRHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAI 324 (489)
T ss_pred ccccccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEE
Confidence 666766544322 24679999999999866654321 1 001100000000000 001346888999999987533
Q ss_pred -EEcCCCCchhhHHHHHHHHhh
Q 009708 463 -YSTCSIDPEENEERVEAFLLR 483 (528)
Q Consensus 463 -ysTcs~~~~Ene~~v~~~l~~ 483 (528)
...-.+...-++..+...+-.
T Consensus 325 vl~~gvlfr~~~e~~IR~~l~~ 346 (489)
T COG0286 325 VLPDGVLFRGGAEKDIRKDLLE 346 (489)
T ss_pred EecCCcCcCCCchHHHHHHHHh
Confidence 333334444467677766655
No 186
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.66 E-value=2.2e-07 Score=90.68 Aligned_cols=73 Identities=22% Similarity=0.155 Sum_probs=61.0
Q ss_pred CCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEc
Q 009708 334 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLD 413 (528)
Q Consensus 334 ~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D 413 (528)
.++.+|||+|||+|..+..+++. ...|+++|+++.+++.+++++...+..+++.+..+|+.. ..+.||+|++.
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~---~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~----~~~~fD~v~~~ 134 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARR---GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLES----LLGRFDTVVCL 134 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchh----ccCCcCEEEEc
Confidence 46779999999999999999875 357999999999999999999988875568899998432 13679999863
No 187
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.64 E-value=4.2e-08 Score=89.73 Aligned_cols=108 Identities=24% Similarity=0.280 Sum_probs=73.7
Q ss_pred HHHHHHhcC-CCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc
Q 009708 324 AGLVVAVVD-PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN 402 (528)
Q Consensus 324 s~l~~~~l~-~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~ 402 (528)
+.++..+.. ..++.+|||+|||.|..+..++.. ..+++++|+++.+++. .+ +.....+..... .
T Consensus 10 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~~~g~D~~~~~~~~----------~~-~~~~~~~~~~~~-~ 74 (161)
T PF13489_consen 10 ADLLERLLPRLKPGKRVLDIGCGTGSFLRALAKR---GFEVTGVDISPQMIEK----------RN-VVFDNFDAQDPP-F 74 (161)
T ss_dssp HHHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHT---TSEEEEEESSHHHHHH----------TT-SEEEEEECHTHH-C
T ss_pred HHHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEECCHHHHhh----------hh-hhhhhhhhhhhh-c
Confidence 445555554 466789999999999999999765 3499999999999987 11 222222222222 1
Q ss_pred CCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCC
Q 009708 403 STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSI 468 (528)
Q Consensus 403 ~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~ 468 (528)
..++||+|++. .++..-++ ...+|+.+.++|||||++++++-..
T Consensus 75 ~~~~fD~i~~~------~~l~~~~d----------------~~~~l~~l~~~LkpgG~l~~~~~~~ 118 (161)
T PF13489_consen 75 PDGSFDLIICN------DVLEHLPD----------------PEEFLKELSRLLKPGGYLVISDPNR 118 (161)
T ss_dssp HSSSEEEEEEE------SSGGGSSH----------------HHHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred cccchhhHhhH------HHHhhccc----------------HHHHHHHHHHhcCCCCEEEEEEcCC
Confidence 24789999973 22333221 2356999999999999999877543
No 188
>PRK06202 hypothetical protein; Provisional
Probab=98.64 E-value=3.1e-07 Score=90.14 Aligned_cols=78 Identities=14% Similarity=0.078 Sum_probs=56.4
Q ss_pred cCCCCCCeEEEeCCccchHHHHHHHHcC---CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCC
Q 009708 331 VDPQPGQSIVDCCAAPGGKTLYMASCLS---GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKC 407 (528)
Q Consensus 331 l~~~~g~~VLDl~aG~G~kt~~la~~~~---~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~f 407 (528)
+...++.+|||+|||+|..+..++.... ...+|+|+|+++.+++.++++....++ ++...|+..+.. ..++|
T Consensus 56 l~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~----~~~~~~~~~l~~-~~~~f 130 (232)
T PRK06202 56 LSADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGV----TFRQAVSDELVA-EGERF 130 (232)
T ss_pred cCCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCC----eEEEEecccccc-cCCCc
Confidence 3445677999999999999998887542 235899999999999999887655443 344444433332 24689
Q ss_pred CEEEEc
Q 009708 408 DKVLLD 413 (528)
Q Consensus 408 D~Vl~D 413 (528)
|+|++.
T Consensus 131 D~V~~~ 136 (232)
T PRK06202 131 DVVTSN 136 (232)
T ss_pred cEEEEC
Confidence 999974
No 189
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=98.63 E-value=2.6e-07 Score=89.00 Aligned_cols=128 Identities=15% Similarity=0.122 Sum_probs=82.8
Q ss_pred CCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEE
Q 009708 333 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 412 (528)
Q Consensus 333 ~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~ 412 (528)
..++.+|||+|||+|..+..++..++ ..+++|+|+|+.+++.++++. .+ +.++++|+.. + ...++||+|++
T Consensus 41 ~~~~~~VLDiGCG~G~~~~~L~~~~~-~~~v~giDiS~~~l~~A~~~~-----~~-~~~~~~d~~~-~-~~~~sfD~V~~ 111 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRLLP-FKHIYGVEINEYAVEKAKAYL-----PN-INIIQGSLFD-P-FKDNFFDLVLT 111 (204)
T ss_pred cCCCCcEEEEecCCCHHHHHHHHhCC-CCeEEEEECCHHHHHHHHhhC-----CC-CcEEEeeccC-C-CCCCCEEEEEE
Confidence 44677999999999999999988653 579999999999999998764 22 5677888876 2 23468999996
Q ss_pred cCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC--------CCchhh----HHHHHHH
Q 009708 413 DAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS--------IDPEEN----EERVEAF 480 (528)
Q Consensus 413 D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs--------~~~~En----e~~v~~~ 480 (528)
. +++.+ .++.++ .++++++.+.+ ++.++.+.+- +...+. -+-..++
T Consensus 112 ~------~vL~h-------l~p~~~-------~~~l~el~r~~--~~~v~i~e~~~~~~~~~~y~~~~~~~~~~d~~~~~ 169 (204)
T TIGR03587 112 K------GVLIH-------INPDNL-------PTAYRELYRCS--NRYILIAEYYNPSPVEISYRGNSGRLWKRDFAGEM 169 (204)
T ss_pred C------Chhhh-------CCHHHH-------HHHHHHHHhhc--CcEEEEEEeeCCCceeeeeeCCcchhhhhhHHHHH
Confidence 3 22211 122222 33477777776 4566654431 111111 1123567
Q ss_pred HhhCCCceEec
Q 009708 481 LLRHPEFSIDP 491 (528)
Q Consensus 481 l~~~~~~~~~~ 491 (528)
++..|+.++..
T Consensus 170 ~~~~~~l~~~~ 180 (204)
T TIGR03587 170 MDRYPDLKLVD 180 (204)
T ss_pred HHhCCcceeee
Confidence 77778777654
No 190
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=98.61 E-value=3.4e-08 Score=98.78 Aligned_cols=161 Identities=23% Similarity=0.233 Sum_probs=111.5
Q ss_pred hHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHH-------HHHHHHHHcCCCc-cEEEEcC
Q 009708 323 SAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLR-------ILNETAKLHQVNS-VIRTIHA 394 (528)
Q Consensus 323 ~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~-------~~~~n~~~~g~~~-~i~~~~~ 394 (528)
-|.+.+....+.||+.|.|-+.|+|++...+|.. ++.|+|-||+-.++. ..+.|++++|... -+.++.+
T Consensus 196 LSli~AN~Amv~pGdivyDPFVGTGslLvsaa~F---Ga~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~ 272 (421)
T KOG2671|consen 196 LSLIMANQAMVKPGDIVYDPFVGTGSLLVSAAHF---GAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTA 272 (421)
T ss_pred HHHHHhhhhccCCCCEEecCccccCceeeehhhh---cceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeee
Confidence 3566677777899999999999999999888875 589999999988876 4678999999653 2467788
Q ss_pred ccccccccCCCCCCEEEEcCCCCCC-c--cccCCchhhcc--------CCHHHHHHHHHHHHHHHHHHhccCcCCCEEEE
Q 009708 395 DLRTFADNSTVKCDKVLLDAPCSGL-G--VLSKRADLRWN--------RRLEDMEELKILQDELLDAASLLVKPGGVLVY 463 (528)
Q Consensus 395 D~~~~~~~~~~~fD~Vl~D~Pcsg~-G--~~~~~pd~~~~--------~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvy 463 (528)
|..+.+......||.|+||||+.-- | .+.++..++-. ........+..+..++|.-+.+.|..||+||
T Consensus 273 D~sn~~~rsn~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv- 351 (421)
T KOG2671|consen 273 DFSNPPLRSNLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLV- 351 (421)
T ss_pred cccCcchhhcceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEE-
Confidence 9887665556789999999999311 1 01111111100 0112334566677789999999999999999
Q ss_pred EcCCCCchhhHHHHHHHHhhCCCceEe
Q 009708 464 STCSIDPEENEERVEAFLLRHPEFSID 490 (528)
Q Consensus 464 sTcs~~~~Ene~~v~~~l~~~~~~~~~ 490 (528)
|-+ |.-+|+....-+-.||.+.+.
T Consensus 352 --~w~-p~~~e~~~~~~~P~h~~lsl~ 375 (421)
T KOG2671|consen 352 --FWL-PTITEEYGEDDIPSHPYLSLI 375 (421)
T ss_pred --Eec-CchhhccCcccCCCCcchhhh
Confidence 332 344444444455566665544
No 191
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.56 E-value=4.7e-07 Score=85.77 Aligned_cols=141 Identities=16% Similarity=0.079 Sum_probs=94.9
Q ss_pred ceeEeecchHHHHHHhcCCCC--CCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEE
Q 009708 315 GLCAVQDESAGLVVAVVDPQP--GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTI 392 (528)
Q Consensus 315 G~~~~Qd~~s~l~~~~l~~~~--g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~ 392 (528)
-...+|-+-+.-..++++..+ ..-|||+|||+|..+..+.+. +-..+++|||+.|++.+.+. ... + .++
T Consensus 28 ri~~IQ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~---Gh~wiGvDiSpsML~~a~~~--e~e--g--dli 98 (270)
T KOG1541|consen 28 RIVLIQAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDS---GHQWIGVDISPSMLEQAVER--ELE--G--DLI 98 (270)
T ss_pred eeeeehHHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccC---CceEEeecCCHHHHHHHHHh--hhh--c--Cee
Confidence 346788888877788877665 567999999999988877653 35689999999999999872 221 1 356
Q ss_pred cCccccccccCCCCCCEEEEc----CCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCC
Q 009708 393 HADLRTFADNSTVKCDKVLLD----APCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSI 468 (528)
Q Consensus 393 ~~D~~~~~~~~~~~fD~Vl~D----~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~ 468 (528)
.+|+-.-.+..++.||.+|+= -+|...-. .++| ......++...+..|++|++.|+-
T Consensus 99 l~DMG~GlpfrpGtFDg~ISISAvQWLcnA~~s-~~~P--------------~~Rl~~FF~tLy~~l~rg~raV~Q---- 159 (270)
T KOG1541|consen 99 LCDMGEGLPFRPGTFDGVISISAVQWLCNADKS-LHVP--------------KKRLLRFFGTLYSCLKRGARAVLQ---- 159 (270)
T ss_pred eeecCCCCCCCCCccceEEEeeeeeeecccCcc-ccCh--------------HHHHHHHhhhhhhhhccCceeEEE----
Confidence 677765444457899998741 22211100 0111 111234677889999999999852
Q ss_pred CchhhHHHHHHHHhh
Q 009708 469 DPEENEERVEAFLLR 483 (528)
Q Consensus 469 ~~~Ene~~v~~~l~~ 483 (528)
+..||+++++-.+..
T Consensus 160 fYpen~~q~d~i~~~ 174 (270)
T KOG1541|consen 160 FYPENEAQIDMIMQQ 174 (270)
T ss_pred ecccchHHHHHHHHH
Confidence 345788887766654
No 192
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=98.56 E-value=6e-07 Score=85.89 Aligned_cols=114 Identities=25% Similarity=0.334 Sum_probs=82.5
Q ss_pred HHHHHHh------cCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccc
Q 009708 324 AGLVVAV------VDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR 397 (528)
Q Consensus 324 s~l~~~~------l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~ 397 (528)
|.|.+.+ +.+.+|.+||-+|+++|....|++...+..|.|+|||.++...+.+-..+++- +| |-.+.+|++
T Consensus 56 SKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R--~N-IiPIl~DAr 132 (229)
T PF01269_consen 56 SKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR--PN-IIPILEDAR 132 (229)
T ss_dssp -HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS--TT-EEEEES-TT
T ss_pred hHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC--Cc-eeeeeccCC
Confidence 5555544 34678999999999999999999999988999999999999988887776663 34 778889998
Q ss_pred cccccC--CCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHH-HHHHHhccCcCCCEEEEEc
Q 009708 398 TFADNS--TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDE-LLDAASLLVKPGGVLVYST 465 (528)
Q Consensus 398 ~~~~~~--~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~-lL~~a~~~LkpGG~LvysT 465 (528)
...... -+.+|.|++|..-.. |.+ ++.++..+||+||.++.+-
T Consensus 133 ~P~~Y~~lv~~VDvI~~DVaQp~-------------------------Qa~I~~~Na~~fLk~gG~~~i~i 178 (229)
T PF01269_consen 133 HPEKYRMLVEMVDVIFQDVAQPD-------------------------QARIAALNARHFLKPGGHLIISI 178 (229)
T ss_dssp SGGGGTTTS--EEEEEEE-SSTT-------------------------HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ChHHhhcccccccEEEecCCChH-------------------------HHHHHHHHHHhhccCCcEEEEEE
Confidence 754432 458999999977521 222 4678889999999988653
No 193
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.56 E-value=7.9e-08 Score=85.08 Aligned_cols=78 Identities=18% Similarity=0.285 Sum_probs=66.8
Q ss_pred CCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEc
Q 009708 334 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLD 413 (528)
Q Consensus 334 ~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D 413 (528)
-.|.+++|+|||.|..++..+ |.+...|+|+|++|.+++...+|++...+. +.++++|..++... .+.||.+++|
T Consensus 47 iEgkkl~DLgcgcGmLs~a~s--m~~~e~vlGfDIdpeALEIf~rNaeEfEvq--idlLqcdildle~~-~g~fDtaviN 121 (185)
T KOG3420|consen 47 IEGKKLKDLGCGCGMLSIAFS--MPKNESVLGFDIDPEALEIFTRNAEEFEVQ--IDLLQCDILDLELK-GGIFDTAVIN 121 (185)
T ss_pred ccCcchhhhcCchhhhHHHhh--cCCCceEEeeecCHHHHHHHhhchHHhhhh--hheeeeeccchhcc-CCeEeeEEec
Confidence 468899999999999986554 345578999999999999999999998886 58899999887654 3789999999
Q ss_pred CCC
Q 009708 414 APC 416 (528)
Q Consensus 414 ~Pc 416 (528)
||.
T Consensus 122 ppF 124 (185)
T KOG3420|consen 122 PPF 124 (185)
T ss_pred CCC
Confidence 998
No 194
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.54 E-value=6.3e-07 Score=97.80 Aligned_cols=137 Identities=12% Similarity=0.130 Sum_probs=100.4
Q ss_pred CCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccC-CCCCCEEEEc
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS-TVKCDKVLLD 413 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~-~~~fD~Vl~D 413 (528)
.+..+||+|||.|..++.+|.. .+...++|+|++...+..+.+.++..|+.| +.+++.|+..+.... ..++|.|.++
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~-~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N-~~~~~~~~~~~~~~~~~~sv~~i~i~ 424 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKM-NPDALFIGVEVYLNGVANVLKLAGEQNITN-FLLFPNNLDLILNDLPNNSLDGIYIL 424 (506)
T ss_pred CCceEEEECCCchHHHHHHHHh-CCCCCEEEEEeeHHHHHHHHHHHHHcCCCe-EEEEcCCHHHHHHhcCcccccEEEEE
Confidence 4668999999999999999997 556789999999999999999999999987 778888876554333 4679999988
Q ss_pred CCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchhhHHHHHHHHhhCCCceEe
Q 009708 414 APCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSID 490 (528)
Q Consensus 414 ~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~Ene~~v~~~l~~~~~~~~~ 490 (528)
=|.- +.|....+. ++ .|..+|+...+.|||||.|.+.|=. ++--+.....+.+++.|+..
T Consensus 425 FPDP----WpKkrh~kr--------Rl--~~~~fl~~~~~~Lk~gG~i~~~TD~---~~y~~~~~~~~~~~~~f~~~ 484 (506)
T PRK01544 425 FPDP----WIKNKQKKK--------RI--FNKERLKILQDKLKDNGNLVFASDI---ENYFYEAIELIQQNGNFEII 484 (506)
T ss_pred CCCC----CCCCCCccc--------cc--cCHHHHHHHHHhcCCCCEEEEEcCC---HHHHHHHHHHHHhCCCeEec
Confidence 7761 222222222 12 3556789999999999999987743 22222233455667777764
No 195
>PRK05785 hypothetical protein; Provisional
Probab=98.52 E-value=2.6e-07 Score=90.43 Aligned_cols=91 Identities=11% Similarity=0.184 Sum_probs=66.8
Q ss_pred CCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEcC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDA 414 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~ 414 (528)
++.+|||+|||+|..+..+++.. .++|+|+|+|+.+++.+++.. ..+++|+..++. ..++||+|++.
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~~---------~~~~~d~~~lp~-~d~sfD~v~~~- 117 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVAD---------DKVVGSFEALPF-RDKSFDVVMSS- 117 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhcc---------ceEEechhhCCC-CCCCEEEEEec-
Confidence 46799999999999999998864 469999999999999987531 246788877653 34789999962
Q ss_pred CCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCC
Q 009708 415 PCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGG 459 (528)
Q Consensus 415 Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG 459 (528)
.+ ++.-+ +. .+.++++.+.|||.+
T Consensus 118 ----~~-l~~~~---------d~-------~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 118 ----FA-LHASD---------NI-------EKVIAEFTRVSRKQV 141 (226)
T ss_pred ----Ch-hhccC---------CH-------HHHHHHHHHHhcCce
Confidence 12 22111 11 335899999999943
No 196
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.50 E-value=1.1e-06 Score=84.35 Aligned_cols=46 Identities=15% Similarity=0.187 Sum_probs=41.5
Q ss_pred CCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHH
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKL 382 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~ 382 (528)
+..+||+||-+|..|+++|..++ ...|+|+||++..++.|+++++.
T Consensus 59 ~~~~LDIGCNsG~lt~~iak~F~-~r~iLGvDID~~LI~~Ark~~r~ 104 (288)
T KOG2899|consen 59 PKQALDIGCNSGFLTLSIAKDFG-PRRILGVDIDPVLIQRARKEIRF 104 (288)
T ss_pred cceeEeccCCcchhHHHHHHhhc-cceeeEeeccHHHHHHHHHhccc
Confidence 55799999999999999999876 46799999999999999998764
No 197
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.47 E-value=1.1e-06 Score=87.56 Aligned_cols=85 Identities=19% Similarity=0.179 Sum_probs=69.2
Q ss_pred hHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc
Q 009708 323 SAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN 402 (528)
Q Consensus 323 ~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~ 402 (528)
....++..++..++++|||+|||+|..|..+++.. ..|+++|+++.+++.+++++.. .. +++++++|+..+...
T Consensus 17 i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~~iE~d~~~~~~l~~~~~~--~~-~v~v~~~D~~~~~~~ 90 (253)
T TIGR00755 17 VIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRA---KKVTAIEIDPRLAEILRKLLSL--YE-RLEVIEGDALKVDLP 90 (253)
T ss_pred HHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhC---CcEEEEECCHHHHHHHHHHhCc--CC-cEEEEECchhcCChh
Confidence 34556666777889999999999999999999873 4699999999999999987743 23 489999999876532
Q ss_pred CCCCCC---EEEEcCCC
Q 009708 403 STVKCD---KVLLDAPC 416 (528)
Q Consensus 403 ~~~~fD---~Vl~D~Pc 416 (528)
.|| .|+.++|+
T Consensus 91 ---~~d~~~~vvsNlPy 104 (253)
T TIGR00755 91 ---DFPKQLKVVSNLPY 104 (253)
T ss_pred ---HcCCcceEEEcCCh
Confidence 466 99999997
No 198
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.43 E-value=1.7e-06 Score=81.29 Aligned_cols=75 Identities=19% Similarity=0.257 Sum_probs=57.8
Q ss_pred HHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccc-cCC
Q 009708 326 LVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-NST 404 (528)
Q Consensus 326 l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~-~~~ 404 (528)
+++++ +.||.+|||+|||.|....++.+. .+.+.+|+|++++.+..+.+ .| +.++++|+..-.. ...
T Consensus 6 ~I~~~--I~pgsrVLDLGCGdG~LL~~L~~~--k~v~g~GvEid~~~v~~cv~----rG----v~Viq~Dld~gL~~f~d 73 (193)
T PF07021_consen 6 IIAEW--IEPGSRVLDLGCGDGELLAYLKDE--KQVDGYGVEIDPDNVAACVA----RG----VSVIQGDLDEGLADFPD 73 (193)
T ss_pred HHHHH--cCCCCEEEecCCCchHHHHHHHHh--cCCeEEEEecCHHHHHHHHH----cC----CCEEECCHHHhHhhCCC
Confidence 45555 457999999999999998888875 36789999999999876543 35 4578999876443 336
Q ss_pred CCCCEEEE
Q 009708 405 VKCDKVLL 412 (528)
Q Consensus 405 ~~fD~Vl~ 412 (528)
.+||.|++
T Consensus 74 ~sFD~VIl 81 (193)
T PF07021_consen 74 QSFDYVIL 81 (193)
T ss_pred CCccEEeh
Confidence 78999996
No 199
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.42 E-value=1.1e-06 Score=89.06 Aligned_cols=112 Identities=18% Similarity=0.262 Sum_probs=83.4
Q ss_pred CCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEcC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDA 414 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~ 414 (528)
.+..|||+|||+|..++..|+. +..+|+|||.|.-. +.+++.++.++++++|+++.+.+.+..- +.+++|+|+..
T Consensus 60 ~dK~VlDVGcGtGILS~F~akA--GA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~L-P~eKVDiIvSE- 134 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKA--GARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIEL-PVEKVDIIVSE- 134 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHh--CcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEec-CccceeEEeeh-
Confidence 5789999999999999999986 46799999988655 9999999999999999999998887632 24789999864
Q ss_pred CCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCC
Q 009708 415 PCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSID 469 (528)
Q Consensus 415 Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~ 469 (528)
+-|... .-...+ ...|-.==++|+|||.++=++|+++
T Consensus 135 -WMGy~L----------l~EsMl-------dsVl~ARdkwL~~~G~i~P~~a~l~ 171 (346)
T KOG1499|consen 135 -WMGYFL----------LYESML-------DSVLYARDKWLKEGGLIYPDRATLY 171 (346)
T ss_pred -hhhHHH----------HHhhhh-------hhhhhhhhhccCCCceEccccceEE
Confidence 212111 001111 1223333578999999998888754
No 200
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=1.2e-06 Score=82.41 Aligned_cols=109 Identities=21% Similarity=0.220 Sum_probs=84.1
Q ss_pred HHHhcC--CCCCCeEEEeCCccchHHHHHHHHcCCCcEE-EEEcCChHHHHHHHHHHHHcCC---------CccEEEEcC
Q 009708 327 VVAVVD--PQPGQSIVDCCAAPGGKTLYMASCLSGQGLV-YAIDINKGRLRILNETAKLHQV---------NSVIRTIHA 394 (528)
Q Consensus 327 ~~~~l~--~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v-~avD~s~~~l~~~~~n~~~~g~---------~~~i~~~~~ 394 (528)
+.+.|. ++||.+.||+|+|+|..|..++.++...|.+ +|||..++.++.+++|+...-- ...+.++.+
T Consensus 72 ~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvG 151 (237)
T KOG1661|consen 72 ALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVG 151 (237)
T ss_pred HHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeC
Confidence 344555 7899999999999999999999887766654 9999999999999999887531 134778899
Q ss_pred ccccccccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 395 DLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 395 D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
|.+..... ..+||+|.+-+..+ ++.+..+..|++||.|+.-
T Consensus 152 Dgr~g~~e-~a~YDaIhvGAaa~----------------------------~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 152 DGRKGYAE-QAPYDAIHVGAAAS----------------------------ELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred CccccCCc-cCCcceEEEccCcc----------------------------ccHHHHHHhhccCCeEEEe
Confidence 99876543 47899999864442 1355567779999999853
No 201
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.40 E-value=6.3e-07 Score=95.98 Aligned_cols=110 Identities=25% Similarity=0.366 Sum_probs=79.1
Q ss_pred CCeEEEeCCccchHHHHHHHH---cCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEE
Q 009708 336 GQSIVDCCAAPGGKTLYMASC---LSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 412 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~---~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~ 412 (528)
+..|+|+|||+|..+..+++. .+...+|+|||.++.++..+++.++.+|+.++|+++++|++++.. ++++|+|+.
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~l--pekvDIIVS 264 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVEL--PEKVDIIVS 264 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCH--SS-EEEEEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCC--CCceeEEEE
Confidence 468999999999998766553 234569999999999999999988999998899999999998764 368999997
Q ss_pred cCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 413 DAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 413 D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
..=-| .|. + +.. -+.|..+-++|||||+++=+.++
T Consensus 265 ElLGs-fg~---n---------El~-------pE~Lda~~rfLkp~Gi~IP~~~t 299 (448)
T PF05185_consen 265 ELLGS-FGD---N---------ELS-------PECLDAADRFLKPDGIMIPSSYT 299 (448)
T ss_dssp ---BT-TBT---T---------TSH-------HHHHHHGGGGEEEEEEEESSEEE
T ss_pred eccCC-ccc---c---------ccC-------HHHHHHHHhhcCCCCEEeCcchh
Confidence 64321 222 1 111 23488889999999998843333
No 202
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.40 E-value=6.5e-06 Score=81.63 Aligned_cols=130 Identities=15% Similarity=0.137 Sum_probs=99.2
Q ss_pred CCeEEEeCCccchHHHHHHHHcCC-CcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccC--CCCCCEEEE
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLSG-QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS--TVKCDKVLL 412 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~~-~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~--~~~fD~Vl~ 412 (528)
.-+|||+|||+|.--+-+....+. ...|.-.|.|+.-++..++.++..|+.+.++|.++|+++..... ....+++++
T Consensus 136 pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~iV 215 (311)
T PF12147_consen 136 PVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLAIV 215 (311)
T ss_pred ceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEEEE
Confidence 348999999999998887776443 35899999999999999999999999997799999998864322 345688886
Q ss_pred cCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchhhHHHHHHHHhhCCC
Q 009708 413 DAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPE 486 (528)
Q Consensus 413 D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~Ene~~v~~~l~~~~~ 486 (528)
+|++--.|| .+.+. ..|......+.|||+|||..-.+||+- +.+...|..|.+
T Consensus 216 ------sGL~ElF~D------n~lv~-------~sl~gl~~al~pgG~lIyTgQPwHPQl--e~IAr~LtsHr~ 268 (311)
T PF12147_consen 216 ------SGLYELFPD------NDLVR-------RSLAGLARALEPGGYLIYTGQPWHPQL--EMIARVLTSHRD 268 (311)
T ss_pred ------ecchhhCCc------HHHHH-------HHHHHHHHHhCCCcEEEEcCCCCCcch--HHHHHHHhcccC
Confidence 344433332 11222 247888899999999999888888863 467888988853
No 203
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.39 E-value=4.1e-07 Score=83.97 Aligned_cols=99 Identities=17% Similarity=0.202 Sum_probs=82.8
Q ss_pred CeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEcCCC
Q 009708 337 QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPC 416 (528)
Q Consensus 337 ~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~Pc 416 (528)
+.+-|+|+|+|..+..+|.. ..+|+|++.+|.+...+++|++-.|..| ++++.+|++++.. +..|.|+|.
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~---A~rViAiE~dPk~a~~a~eN~~v~g~~n-~evv~gDA~~y~f---e~ADvvicE--- 103 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA---AERVIAIEKDPKRARLAEENLHVPGDVN-WEVVVGDARDYDF---ENADVVICE--- 103 (252)
T ss_pred hceeeccCCcchHHHHHHhh---hceEEEEecCcHHHHHhhhcCCCCCCcc-eEEEecccccccc---cccceeHHH---
Confidence 68999999999999988875 5689999999999999999999999886 9999999998764 467999852
Q ss_pred CCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEE
Q 009708 417 SGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLV 462 (528)
Q Consensus 417 sg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lv 462 (528)
.-+..-+.+-|...++.+.++|+..++++
T Consensus 104 -----------------mlDTaLi~E~qVpV~n~vleFLr~d~tii 132 (252)
T COG4076 104 -----------------MLDTALIEEKQVPVINAVLEFLRYDPTII 132 (252)
T ss_pred -----------------HhhHHhhcccccHHHHHHHHHhhcCCccc
Confidence 12333455567778999999999999887
No 204
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.36 E-value=6.3e-06 Score=81.70 Aligned_cols=130 Identities=17% Similarity=0.184 Sum_probs=90.1
Q ss_pred CCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCC---CccEEEEcCccccccccCCC-CCCEE
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQV---NSVIRTIHADLRTFADNSTV-KCDKV 410 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~---~~~i~~~~~D~~~~~~~~~~-~fD~V 410 (528)
...+||=+|-|.|+.+..+.+. .+-.+|++||+++..++.+++.+..... +.+++++.+|+..+.....+ +||+|
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~-~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKH-PPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTS-TT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CcCceEEEcCCChhhhhhhhhc-CCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 3569999999999999888765 3346899999999999999998766432 35799999999998876656 89999
Q ss_pred EEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC-CCchhhHHHHHHHHhh
Q 009708 411 LLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS-IDPEENEERVEAFLLR 483 (528)
Q Consensus 411 l~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs-~~~~Ene~~v~~~l~~ 483 (528)
++|.+- ..|.... -...++++.+.+.|+|||+++.-..+ ....+.-..+...++.
T Consensus 155 i~D~~d-p~~~~~~-----------------l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~~i~~tl~~ 210 (246)
T PF01564_consen 155 IVDLTD-PDGPAPN-----------------LFTREFYQLCKRRLKPDGVLVLQAGSPFLHPELFKSILKTLRS 210 (246)
T ss_dssp EEESSS-TTSCGGG-----------------GSSHHHHHHHHHHEEEEEEEEEEEEETTTTHHHHHHHHHHHHT
T ss_pred EEeCCC-CCCCccc-----------------ccCHHHHHHHHhhcCCCcEEEEEccCcccchHHHHHHHHHHHH
Confidence 999775 2221000 01245688899999999999975433 3232323334444444
No 205
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=98.36 E-value=1.4e-06 Score=89.25 Aligned_cols=71 Identities=21% Similarity=0.210 Sum_probs=58.0
Q ss_pred CCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCC----ccEEEEcCccccccccCCCCCCEE
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVN----SVIRTIHADLRTFADNSTVKCDKV 410 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~----~~i~~~~~D~~~~~~~~~~~fD~V 410 (528)
+|.+|||+|||+|..+..+++. +.+|+|+|+|+.+++.++++++..+.. ..+++...|+..+ .++||+|
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~---g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l----~~~fD~V 216 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE---GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL----SGKYDTV 216 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc----CCCcCEE
Confidence 5779999999999999999975 468999999999999999998875321 2367888887554 3679999
Q ss_pred EE
Q 009708 411 LL 412 (528)
Q Consensus 411 l~ 412 (528)
++
T Consensus 217 v~ 218 (315)
T PLN02585 217 TC 218 (315)
T ss_pred EE
Confidence 85
No 206
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.35 E-value=2e-06 Score=84.96 Aligned_cols=89 Identities=20% Similarity=0.228 Sum_probs=74.0
Q ss_pred HHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccC
Q 009708 324 AGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS 403 (528)
Q Consensus 324 s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~ 403 (528)
..-+++..++.+++.||++|+|.|+.|..+++. ..+|+|+|+++..+..+++.+. ..++++++++|+..+....
T Consensus 19 ~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~---~~~v~aiEiD~~l~~~L~~~~~---~~~n~~vi~~DaLk~d~~~ 92 (259)
T COG0030 19 IDKIVEAANISPGDNVLEIGPGLGALTEPLLER---AARVTAIEIDRRLAEVLKERFA---PYDNLTVINGDALKFDFPS 92 (259)
T ss_pred HHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhh---cCeEEEEEeCHHHHHHHHHhcc---cccceEEEeCchhcCcchh
Confidence 456778888999999999999999999999987 5689999999999999998776 2235899999999876431
Q ss_pred CCCCCEEEEcCCCCC
Q 009708 404 TVKCDKVLLDAPCSG 418 (528)
Q Consensus 404 ~~~fD~Vl~D~Pcsg 418 (528)
-..++.|+.|.|+.-
T Consensus 93 l~~~~~vVaNlPY~I 107 (259)
T COG0030 93 LAQPYKVVANLPYNI 107 (259)
T ss_pred hcCCCEEEEcCCCcc
Confidence 116899999999953
No 207
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=98.34 E-value=7.6e-07 Score=93.29 Aligned_cols=105 Identities=26% Similarity=0.303 Sum_probs=80.0
Q ss_pred CCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCc-cEEEEcCccccccccCCCCCCEEEEcC
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNS-VIRTIHADLRTFADNSTVKCDKVLLDA 414 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~-~i~~~~~D~~~~~~~~~~~fD~Vl~D~ 414 (528)
+-+|||.-||+|.-++..+..+.+..+|+++|+|+.+++.+++|++.+++++ ++++.+.|+..+.......||+|=+||
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDlDP 129 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDLDP 129 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE--
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEeCC
Confidence 3489999999999999999887766799999999999999999999999997 789999999887643457899999997
Q ss_pred CCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 415 PCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 415 Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
=-|. .-+|+.|.+.++.|| |++.|||
T Consensus 130 fGSp--------------------------~pfldsA~~~v~~gG-ll~vTaT 155 (377)
T PF02005_consen 130 FGSP--------------------------APFLDSALQAVKDGG-LLCVTAT 155 (377)
T ss_dssp SS----------------------------HHHHHHHHHHEEEEE-EEEEEE-
T ss_pred CCCc--------------------------cHhHHHHHHHhhcCC-EEEEecc
Confidence 6532 235999999999988 5556776
No 208
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.34 E-value=3.7e-06 Score=81.89 Aligned_cols=112 Identities=11% Similarity=-0.009 Sum_probs=78.0
Q ss_pred CCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHH------------HHcCCCccEEEEcCcccccc
Q 009708 333 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETA------------KLHQVNSVIRTIHADLRTFA 400 (528)
Q Consensus 333 ~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~------------~~~g~~~~i~~~~~D~~~~~ 400 (528)
+.++.+||+.|||.|.-..++|++ +-+|+|+|+|+..++.+.+.. .+..- ..|+++++|++++.
T Consensus 41 ~~~~~rvLvPgCGkg~D~~~LA~~---G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~-~~i~~~~gD~f~l~ 116 (226)
T PRK13256 41 INDSSVCLIPMCGCSIDMLFFLSK---GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKG-DDIEIYVADIFNLP 116 (226)
T ss_pred CCCCCeEEEeCCCChHHHHHHHhC---CCcEEEEecCHHHHHHHHHHcCCCcceecccccceecc-CceEEEEccCcCCC
Confidence 345789999999999999999985 568999999999999875521 01111 24899999999985
Q ss_pred c--cCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCC
Q 009708 401 D--NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSI 468 (528)
Q Consensus 401 ~--~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~ 468 (528)
. ...+.||.|+- --| . ..-.|+ . ..+..+++.++|+|||.++..+-..
T Consensus 117 ~~~~~~~~fD~VyD-ra~--~--~Alpp~--------~-------R~~Y~~~l~~lL~pgg~llll~~~~ 166 (226)
T PRK13256 117 KIANNLPVFDIWYD-RGA--Y--IALPND--------L-------RTNYAKMMLEVCSNNTQILLLVMEH 166 (226)
T ss_pred ccccccCCcCeeee-ehh--H--hcCCHH--------H-------HHHHHHHHHHHhCCCcEEEEEEEec
Confidence 4 22357998762 111 1 111222 2 2335788899999999988776543
No 209
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=98.31 E-value=1.7e-07 Score=80.33 Aligned_cols=103 Identities=25% Similarity=0.332 Sum_probs=46.0
Q ss_pred EEeCCccchHHHHHHHHcCCCc--EEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCC-CCCCEEEEcCCC
Q 009708 340 VDCCAAPGGKTLYMASCLSGQG--LVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNST-VKCDKVLLDAPC 416 (528)
Q Consensus 340 LDl~aG~G~kt~~la~~~~~~~--~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~-~~fD~Vl~D~Pc 416 (528)
|++|++.|..|+.+++.+...+ +++++|..+. .+..++.+++.++.++++++++|..+...... .+||+|++|.+-
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~H 79 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGDH 79 (106)
T ss_dssp --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES--
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCCC
Confidence 6899999999999998776554 7999999997 55566666667887789999999987654433 789999999875
Q ss_pred CCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcC
Q 009708 417 SGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTC 466 (528)
Q Consensus 417 sg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTc 466 (528)
+. +.+ ..-+..+...|+|||++++-.|
T Consensus 80 ~~----------------~~~-------~~dl~~~~~~l~~ggviv~dD~ 106 (106)
T PF13578_consen 80 SY----------------EAV-------LRDLENALPRLAPGGVIVFDDY 106 (106)
T ss_dssp -H----------------HHH-------HHHHHHHGGGEEEEEEEEEE--
T ss_pred CH----------------HHH-------HHHHHHHHHHcCCCeEEEEeCc
Confidence 32 111 2348889999999999997654
No 210
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.29 E-value=6.2e-07 Score=85.42 Aligned_cols=108 Identities=18% Similarity=0.227 Sum_probs=77.9
Q ss_pred CCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccc-cCCCCCCEE
Q 009708 332 DPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-NSTVKCDKV 410 (528)
Q Consensus 332 ~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~-~~~~~fD~V 410 (528)
+..+-.++||+|||+|-.+..+-.+ ..++++||+|..|++.+.+. |+-+ +..++|+..|.. ...++||+|
T Consensus 122 ~~g~F~~~lDLGCGTGL~G~~lR~~---a~~ltGvDiS~nMl~kA~eK----g~YD--~L~~Aea~~Fl~~~~~er~DLi 192 (287)
T COG4976 122 DLGPFRRMLDLGCGTGLTGEALRDM---ADRLTGVDISENMLAKAHEK----GLYD--TLYVAEAVLFLEDLTQERFDLI 192 (287)
T ss_pred cCCccceeeecccCcCcccHhHHHH---HhhccCCchhHHHHHHHHhc----cchH--HHHHHHHHHHhhhccCCcccch
Confidence 3344579999999999998887665 35899999999999887653 3322 356777776654 346789998
Q ss_pred EEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCc
Q 009708 411 LLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDP 470 (528)
Q Consensus 411 l~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~ 470 (528)
.. .++-.+.-....++--+..+|+|||.+.+|.-+...
T Consensus 193 ~A----------------------aDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~ 230 (287)
T COG4976 193 VA----------------------ADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETLPD 230 (287)
T ss_pred hh----------------------hhHHHhhcchhhHHHHHHHhcCCCceEEEEecccCC
Confidence 74 233333333345688899999999999999876544
No 211
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=98.28 E-value=2.7e-06 Score=79.98 Aligned_cols=103 Identities=17% Similarity=0.242 Sum_probs=79.9
Q ss_pred CeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEE-EEcCccccccccCCCCCCEEEEc-C
Q 009708 337 QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIR-TIHADLRTFADNSTVKCDKVLLD-A 414 (528)
Q Consensus 337 ~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~-~~~~D~~~~~~~~~~~fD~Vl~D-~ 414 (528)
..||++|||||..--+.-. .+..+|+++|.++.+-+.+.+.++.....+ ++ ++.++..+++.-...++|.|++- .
T Consensus 78 ~~vLEvgcGtG~Nfkfy~~--~p~~svt~lDpn~~mee~~~ks~~E~k~~~-~~~fvva~ge~l~~l~d~s~DtVV~Tlv 154 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFYPW--KPINSVTCLDPNEKMEEIADKSAAEKKPLQ-VERFVVADGENLPQLADGSYDTVVCTLV 154 (252)
T ss_pred cceEEecccCCCCcccccC--CCCceEEEeCCcHHHHHHHHHHHhhccCcc-eEEEEeechhcCcccccCCeeeEEEEEE
Confidence 3689999999986544321 356799999999999999999998886665 55 99999999885556899999854 2
Q ss_pred CCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEc
Q 009708 415 PCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465 (528)
Q Consensus 415 Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysT 465 (528)
=||- + .+.+.|++.-++|+|||++++..
T Consensus 155 LCSv----------------e-------~~~k~L~e~~rlLRpgG~iifiE 182 (252)
T KOG4300|consen 155 LCSV----------------E-------DPVKQLNEVRRLLRPGGRIIFIE 182 (252)
T ss_pred Eecc----------------C-------CHHHHHHHHHHhcCCCcEEEEEe
Confidence 3432 1 13455999999999999999754
No 212
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.27 E-value=5.5e-06 Score=83.35 Aligned_cols=120 Identities=16% Similarity=0.251 Sum_probs=92.1
Q ss_pred HHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcC--C-CccEEEEcCccccccccC
Q 009708 327 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQ--V-NSVIRTIHADLRTFADNS 403 (528)
Q Consensus 327 ~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g--~-~~~i~~~~~D~~~~~~~~ 403 (528)
+..+..+.| .+||=+|-|.|+.+..+++.. +-.+++.||+++..++.+++-+.... . +.+++++.+|+.++....
T Consensus 69 ~~~~ah~~p-k~VLiiGgGdG~tlRevlkh~-~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~ 146 (282)
T COG0421 69 VPLLAHPNP-KRVLIIGGGDGGTLREVLKHL-PVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDC 146 (282)
T ss_pred chhhhCCCC-CeEEEECCCccHHHHHHHhcC-CcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhC
Confidence 333445666 599999999999999999873 35799999999999999999876643 2 357999999999998776
Q ss_pred CCCCCEEEEcCCC-CCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 404 TVKCDKVLLDAPC-SGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 404 ~~~fD~Vl~D~Pc-sg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
..+||+|++|.-- .|-|. . -...++++.+.+.|+++|++|.-+-|
T Consensus 147 ~~~fDvIi~D~tdp~gp~~--------------~-----Lft~eFy~~~~~~L~~~Gi~v~q~~~ 192 (282)
T COG0421 147 EEKFDVIIVDSTDPVGPAE--------------A-----LFTEEFYEGCRRALKEDGIFVAQAGS 192 (282)
T ss_pred CCcCCEEEEcCCCCCCccc--------------c-----cCCHHHHHHHHHhcCCCcEEEEecCC
Confidence 6689999998322 12111 0 02346799999999999999987555
No 213
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=98.27 E-value=3.2e-05 Score=77.14 Aligned_cols=90 Identities=24% Similarity=0.369 Sum_probs=76.4
Q ss_pred HHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccC---
Q 009708 327 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS--- 403 (528)
Q Consensus 327 ~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~--- 403 (528)
+++.|.+.|+...+|+--|-||-+..+.+.++..++++|+|.++.+++.+++.+...+ ++++++++.+.++....
T Consensus 15 ~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~--~r~~~v~~~F~~l~~~l~~~ 92 (314)
T COG0275 15 VVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD--GRVTLVHGNFANLAEALKEL 92 (314)
T ss_pred HHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC--CcEEEEeCcHHHHHHHHHhc
Confidence 4567888999999999999999999999998878899999999999999999998876 46999999887765432
Q ss_pred -CCCCCEEEEcCCCCC
Q 009708 404 -TVKCDKVLLDAPCSG 418 (528)
Q Consensus 404 -~~~fD~Vl~D~Pcsg 418 (528)
..++|.|++|--.|+
T Consensus 93 ~i~~vDGiL~DLGVSS 108 (314)
T COG0275 93 GIGKVDGILLDLGVSS 108 (314)
T ss_pred CCCceeEEEEeccCCc
Confidence 358999999965544
No 214
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=98.27 E-value=5.9e-06 Score=80.18 Aligned_cols=129 Identities=22% Similarity=0.225 Sum_probs=74.8
Q ss_pred CCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc-CCCCCCEEEEc
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVKCDKVLLD 413 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~-~~~~fD~Vl~D 413 (528)
.|.+||=+|=.- ..++.+| +.+...+|+.+|+++..++..++.+++.|++ |++++.|+++..+. ..++||.++.|
T Consensus 44 ~gk~il~lGDDD-LtSlA~a-l~~~~~~I~VvDiDeRll~fI~~~a~~~gl~--i~~~~~DlR~~LP~~~~~~fD~f~TD 119 (243)
T PF01861_consen 44 EGKRILFLGDDD-LTSLALA-LTGLPKRITVVDIDERLLDFINRVAEEEGLP--IEAVHYDLRDPLPEELRGKFDVFFTD 119 (243)
T ss_dssp TT-EEEEES-TT--HHHHHH-HHT--SEEEEE-S-HHHHHHHHHHHHHHT----EEEE---TTS---TTTSS-BSEEEE-
T ss_pred cCCEEEEEcCCc-HHHHHHH-hhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc--eEEEEecccccCCHHHhcCCCEEEeC
Confidence 477898776332 2334444 3455679999999999999999999999998 89999999986543 36899999999
Q ss_pred CCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCc--hhhHHHHHHHHhhCCCceEec
Q 009708 414 APCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDP--EENEERVEAFLLRHPEFSIDP 491 (528)
Q Consensus 414 ~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~--~Ene~~v~~~l~~~~~~~~~~ 491 (528)
||++-.|+ .-++..+.+.||..|..+|-.++..+ .+--..++.++.+. ++.+..
T Consensus 120 PPyT~~G~-----------------------~LFlsRgi~~Lk~~g~~gy~~~~~~~~s~~~~~~~Q~~l~~~-gl~i~d 175 (243)
T PF01861_consen 120 PPYTPEGL-----------------------KLFLSRGIEALKGEGCAGYFGFTHKEASPDKWLEVQRFLLEM-GLVITD 175 (243)
T ss_dssp --SSHHHH-----------------------HHHHHHHHHTB-STT-EEEEEE-TTT--HHHHHHHHHHHHTS---EEEE
T ss_pred CCCCHHHH-----------------------HHHHHHHHHHhCCCCceEEEEEecCcCcHHHHHHHHHHHHHC-CcCHHH
Confidence 99975444 33699999999987755666566543 22223566666643 444433
No 215
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.27 E-value=3.5e-06 Score=86.92 Aligned_cols=110 Identities=25% Similarity=0.333 Sum_probs=70.8
Q ss_pred CCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcC---------CCccEEEEcCcccccc--cc-
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQ---------VNSVIRTIHADLRTFA--DN- 402 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g---------~~~~i~~~~~D~~~~~--~~- 402 (528)
++.+|||||||-||-..-.... +-..++|+|++...++.++++.+... ..-...++.+|...-. ..
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~--~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~ 139 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKA--KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKL 139 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHT--T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTS
T ss_pred CCCeEEEecCCCchhHHHHHhc--CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhc
Confidence 6889999999999976655442 46799999999999999999984321 1113567888876421 11
Q ss_pred C--CCCCCEEEEcCCCCCCccccCCchhhccC-CHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEc
Q 009708 403 S--TVKCDKVLLDAPCSGLGVLSKRADLRWNR-RLEDMEELKILQDELLDAASLLVKPGGVLVYST 465 (528)
Q Consensus 403 ~--~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~-~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysT 465 (528)
. ..+||+|-|--. ++|.. +.+.. +.+|.++...|+|||+++-.|
T Consensus 140 ~~~~~~FDvVScQFa------------lHY~Fese~~a-------r~~l~Nvs~~Lk~GG~FIgT~ 186 (331)
T PF03291_consen 140 PPRSRKFDVVSCQFA------------LHYAFESEEKA-------RQFLKNVSSLLKPGGYFIGTT 186 (331)
T ss_dssp SSTTS-EEEEEEES-------------GGGGGSSHHHH-------HHHHHHHHHTEEEEEEEEEEE
T ss_pred cccCCCcceeehHHH------------HHHhcCCHHHH-------HHHHHHHHHhcCCCCEEEEEe
Confidence 1 258999875311 12322 23333 336999999999999988554
No 216
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.27 E-value=1e-05 Score=73.66 Aligned_cols=119 Identities=19% Similarity=0.195 Sum_probs=92.1
Q ss_pred hHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccc-
Q 009708 323 SAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD- 401 (528)
Q Consensus 323 ~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~- 401 (528)
.++.++..+++..|--||++|.|+|-+|-.+.++......++++|.|++.+..+.+.. ++ +.++++|+.++..
T Consensus 36 lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~-----p~-~~ii~gda~~l~~~ 109 (194)
T COG3963 36 LARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY-----PG-VNIINGDAFDLRTT 109 (194)
T ss_pred HHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC-----CC-ccccccchhhHHHH
Confidence 3556677788899999999999999999999998777778999999999998887643 32 5688999987652
Q ss_pred ---cCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 402 ---NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 402 ---~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
.....||.|++-.|.-..-+ . .-.++|+.+...|.+||.+|--|.+
T Consensus 110 l~e~~gq~~D~viS~lPll~~P~-------------~-------~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 110 LGEHKGQFFDSVISGLPLLNFPM-------------H-------RRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred HhhcCCCeeeeEEeccccccCcH-------------H-------HHHHHHHHHHHhcCCCCeEEEEEec
Confidence 22467999998887632111 1 1235799999999999999966655
No 217
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=98.25 E-value=5.3e-06 Score=79.54 Aligned_cols=124 Identities=25% Similarity=0.273 Sum_probs=92.5
Q ss_pred CCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccC--CCCCCE
Q 009708 332 DPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS--TVKCDK 409 (528)
Q Consensus 332 ~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~--~~~fD~ 409 (528)
.++||.+||-|||++|....|++..+++.+-|+|||.|+..=..+-..+++- +| |..+..|++...+.- -.-.|.
T Consensus 153 hikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR--tN-iiPIiEDArhP~KYRmlVgmVDv 229 (317)
T KOG1596|consen 153 HIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR--TN-IIPIIEDARHPAKYRMLVGMVDV 229 (317)
T ss_pred eecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc--CC-ceeeeccCCCchheeeeeeeEEE
Confidence 4689999999999999999999999999999999999988776666555442 34 566778888754321 346899
Q ss_pred EEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHH-HHHHHhccCcCCCEEEEE---cCCCCchhhHHHHHHHHhh
Q 009708 410 VLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDE-LLDAASLLVKPGGVLVYS---TCSIDPEENEERVEAFLLR 483 (528)
Q Consensus 410 Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~-lL~~a~~~LkpGG~Lvys---Tcs~~~~Ene~~v~~~l~~ 483 (528)
||.|.+-. + |.+ +.-+|..+||+||.+|+| .|+-..-.+|.+++.-.++
T Consensus 230 IFaDvaqp------------------d-------q~RivaLNA~~FLk~gGhfvisikancidstv~ae~vFa~Ev~k 282 (317)
T KOG1596|consen 230 IFADVAQP------------------D-------QARIVALNAQYFLKNGGHFVISIKANCIDSTVFAEAVFAAEVKK 282 (317)
T ss_pred EeccCCCc------------------h-------hhhhhhhhhhhhhccCCeEEEEEecccccccccHHHHHHHHHHH
Confidence 99998762 1 222 345788999999999865 5665666677776654443
No 218
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.24 E-value=2.2e-06 Score=80.37 Aligned_cols=111 Identities=20% Similarity=0.227 Sum_probs=66.6
Q ss_pred CCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcC--CCccEEEEcCcccccc--c-cCCCCC
Q 009708 333 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQ--VNSVIRTIHADLRTFA--D-NSTVKC 407 (528)
Q Consensus 333 ~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g--~~~~i~~~~~D~~~~~--~-~~~~~f 407 (528)
...+.+||++|||+|..++.++... +..+|+.-|.++ .++.++.|++.++ ..+.+.+...|..+.. . ....+|
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~-~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~ 120 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLF-GAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSF 120 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT--T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSB
T ss_pred hcCCceEEEECCccchhHHHHHhcc-CCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccC
Confidence 3457899999999999999988863 467999999999 9999999999987 4555777666643311 1 123579
Q ss_pred CEEEE-cCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCC
Q 009708 408 DKVLL-DAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSID 469 (528)
Q Consensus 408 D~Vl~-D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~ 469 (528)
|+||. |.=+ . .+. ...|++....+++++|.+++ .+..-
T Consensus 121 D~IlasDv~Y--------------~--~~~-------~~~L~~tl~~ll~~~~~vl~-~~~~R 159 (173)
T PF10294_consen 121 DVILASDVLY--------------D--EEL-------FEPLVRTLKRLLKPNGKVLL-AYKRR 159 (173)
T ss_dssp SEEEEES--S-----------------GGG-------HHHHHHHHHHHBTT-TTEEE-EEE-S
T ss_pred CEEEEecccc--------------h--HHH-------HHHHHHHHHHHhCCCCEEEE-EeCEe
Confidence 99984 3222 1 122 23457778888999998444 44443
No 219
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.21 E-value=1.7e-05 Score=74.47 Aligned_cols=130 Identities=25% Similarity=0.301 Sum_probs=92.8
Q ss_pred CCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccC--CCCCCE
Q 009708 332 DPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS--TVKCDK 409 (528)
Q Consensus 332 ~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~--~~~fD~ 409 (528)
.+.+|++||=|||++|....|++...+ .|.|+|||.++.....+-..+++- + ++-.+..|+....... -+..|+
T Consensus 73 pi~~g~~VLYLGAasGTTvSHVSDIv~-~G~iYaVEfs~R~~reLl~~a~~R--~-Ni~PIL~DA~~P~~Y~~~Ve~VDv 148 (231)
T COG1889 73 PIKEGSKVLYLGAASGTTVSHVSDIVG-EGRIYAVEFSPRPMRELLDVAEKR--P-NIIPILEDARKPEKYRHLVEKVDV 148 (231)
T ss_pred CcCCCCEEEEeeccCCCcHhHHHhccC-CCcEEEEEecchhHHHHHHHHHhC--C-CceeeecccCCcHHhhhhcccccE
Confidence 357899999999999999999999876 799999999999998877777652 2 3778889997654321 467999
Q ss_pred EEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHH-HHHHHhccCcCCCEEE--EEcCCCCchhh-HHHHHHHHhhC-
Q 009708 410 VLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDE-LLDAASLLVKPGGVLV--YSTCSIDPEEN-EERVEAFLLRH- 484 (528)
Q Consensus 410 Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~-lL~~a~~~LkpGG~Lv--ysTcs~~~~En-e~~v~~~l~~~- 484 (528)
|+.|..-- .|.+ +..+|-.+||+||.++ +-..|+..... +++...-+.+.
T Consensus 149 iy~DVAQp-------------------------~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~vf~~ev~kL~ 203 (231)
T COG1889 149 IYQDVAQP-------------------------NQAEILADNAEFFLKKGGYVVIAIKARSIDVTADPEEVFKDEVEKLE 203 (231)
T ss_pred EEEecCCc-------------------------hHHHHHHHHHHHhcccCCeEEEEEEeecccccCCHHHHHHHHHHHHH
Confidence 99986541 1333 4678899999999544 55566654433 44554444332
Q ss_pred -CCceEe
Q 009708 485 -PEFSID 490 (528)
Q Consensus 485 -~~~~~~ 490 (528)
.+|++.
T Consensus 204 ~~~f~i~ 210 (231)
T COG1889 204 EGGFEIL 210 (231)
T ss_pred hcCceee
Confidence 245554
No 220
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.17 E-value=7e-06 Score=80.29 Aligned_cols=129 Identities=19% Similarity=0.228 Sum_probs=92.4
Q ss_pred HHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCC
Q 009708 325 GLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNST 404 (528)
Q Consensus 325 ~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~ 404 (528)
.-+++-.++++++.||++|-|||..|..|.+. +.+|+|+|+++.++..++++.+-....+..+++++|+.....
T Consensus 48 ~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~---~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~--- 121 (315)
T KOG0820|consen 48 DQIVEKADLKPTDVVLEVGPGTGNLTVKLLEA---GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDL--- 121 (315)
T ss_pred HHHHhccCCCCCCEEEEeCCCCCHHHHHHHHh---cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCC---
Confidence 34556667899999999999999999999886 679999999999999999998877666889999999987653
Q ss_pred CCCCEEEEcCCC--CCCcccc--CCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCC
Q 009708 405 VKCDKVLLDAPC--SGLGVLS--KRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSID 469 (528)
Q Consensus 405 ~~fD~Vl~D~Pc--sg~G~~~--~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~ 469 (528)
..||.++.|.|+ |+-+++. .++.+.|. ...-+|+++ |.+++..-|...|+--|+.
T Consensus 122 P~fd~cVsNlPyqISSp~vfKLL~~~~~fr~-------AvlmfQ~Ef---a~RLva~pgd~~Ycrlsin 180 (315)
T KOG0820|consen 122 PRFDGCVSNLPYQISSPLVFKLLLHRPVFRC-------AVLMFQREF---ALRLVARPGDSLYCRLSIN 180 (315)
T ss_pred cccceeeccCCccccCHHHHHhcCCCCCcce-------eeeehhhhh---hhhhccCCCCchhceeehh
Confidence 359999999998 3334322 12223332 011234433 4455555566777655554
No 221
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.17 E-value=1.1e-05 Score=80.79 Aligned_cols=103 Identities=17% Similarity=0.232 Sum_probs=79.3
Q ss_pred CCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEcC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDA 414 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~ 414 (528)
.|..|||+|||+|..+..+|+. +..+|+|||.| ++.+.++..++-+++.++|+++.+.+.+.. .+++.|+||..|
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqA--GA~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdie--LPEk~DviISEP 251 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQA--GAKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDIE--LPEKVDVIISEP 251 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHh--CcceEEEEehh-HHHHHHHHHHhcCCccceEEEccCcccccc--CchhccEEEecc
Confidence 4779999999999999998875 56799999976 678899999999999999999999887754 358899999876
Q ss_pred CCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEE
Q 009708 415 PCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLV 462 (528)
Q Consensus 415 Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lv 462 (528)
-- .+-- +...++. .-+|.++|||.|.++
T Consensus 252 MG----~mL~--------NERMLEs--------Yl~Ark~l~P~GkMf 279 (517)
T KOG1500|consen 252 MG----YMLV--------NERMLES--------YLHARKWLKPNGKMF 279 (517)
T ss_pred ch----hhhh--------hHHHHHH--------HHHHHhhcCCCCccc
Confidence 53 2111 1122222 335669999999876
No 222
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.16 E-value=5.2e-06 Score=80.71 Aligned_cols=137 Identities=21% Similarity=0.268 Sum_probs=87.0
Q ss_pred cCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHH-cC----------CCccEEEEcCccccc
Q 009708 331 VDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKL-HQ----------VNSVIRTIHADLRTF 399 (528)
Q Consensus 331 l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~-~g----------~~~~i~~~~~D~~~~ 399 (528)
+...++.+||..|||.|.-...+|++ +-+|+|+|+|+.+++.+.+.... .. -.+.|+++++|++.+
T Consensus 33 l~~~~~~rvLvPgCG~g~D~~~La~~---G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l 109 (218)
T PF05724_consen 33 LALKPGGRVLVPGCGKGYDMLWLAEQ---GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFEL 109 (218)
T ss_dssp HTTSTSEEEEETTTTTSCHHHHHHHT---TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTG
T ss_pred cCCCCCCeEEEeCCCChHHHHHHHHC---CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccC
Confidence 34567789999999999999999985 46899999999999987332111 00 012478999999998
Q ss_pred cccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchh-------
Q 009708 400 ADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEE------- 472 (528)
Q Consensus 400 ~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~E------- 472 (528)
.....++||.|+ |=-| . ..-.|+. .. +..+++.++|+|||++++.|-.+...+
T Consensus 110 ~~~~~g~fD~iy-Dr~~--l--~Alpp~~--------R~-------~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPPf~ 169 (218)
T PF05724_consen 110 PPEDVGKFDLIY-DRTF--L--CALPPEM--------RE-------RYAQQLASLLKPGGRGLLITLEYPQGEMEGPPFS 169 (218)
T ss_dssp GGSCHHSEEEEE-ECSS--T--TTS-GGG--------HH-------HHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS--
T ss_pred ChhhcCCceEEE-Eecc--c--ccCCHHH--------HH-------HHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcCCC
Confidence 765556899886 3222 1 2223332 22 247788999999999555544322111
Q ss_pred -hHHHHHHHHhhCCCceEecC
Q 009708 473 -NEERVEAFLLRHPEFSIDPA 492 (528)
Q Consensus 473 -ne~~v~~~l~~~~~~~~~~~ 492 (528)
.++.+..++. ++|++..+
T Consensus 170 v~~~ev~~l~~--~~f~i~~l 188 (218)
T PF05724_consen 170 VTEEEVRELFG--PGFEIEEL 188 (218)
T ss_dssp --HHHHHHHHT--TTEEEEEE
T ss_pred CCHHHHHHHhc--CCcEEEEE
Confidence 2334555555 56666544
No 223
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.15 E-value=1.5e-06 Score=91.31 Aligned_cols=107 Identities=25% Similarity=0.361 Sum_probs=91.3
Q ss_pred CCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccC---CCCCCEE
Q 009708 334 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS---TVKCDKV 410 (528)
Q Consensus 334 ~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~---~~~fD~V 410 (528)
.++-+|||.-|++|.-++..|..+++-+.|+|.|.++..++..++|++.++.++.++..+.|+..+.-.. ...||+|
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvI 187 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVI 187 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceE
Confidence 3466899999999999999999999888999999999999999999999999998999999987654333 3689999
Q ss_pred EEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 411 LLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 411 l~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
=+||--|.+ .+|+.|.+.+..|| |++.|||
T Consensus 188 DLDPyGs~s--------------------------~FLDsAvqav~~gG-LL~vT~T 217 (525)
T KOG1253|consen 188 DLDPYGSPS--------------------------PFLDSAVQAVRDGG-LLCVTCT 217 (525)
T ss_pred ecCCCCCcc--------------------------HHHHHHHHHhhcCC-EEEEEec
Confidence 999765431 25999999999999 5567887
No 224
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.14 E-value=1.2e-05 Score=76.01 Aligned_cols=99 Identities=20% Similarity=0.237 Sum_probs=77.7
Q ss_pred eEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEcCCCC
Q 009708 338 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCS 417 (528)
Q Consensus 338 ~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~Pcs 417 (528)
+|+|+|+|.|-=++-+|-.. +..+++.+|.+..++..++.-+..+|++| ++++++.+.+ ......||.|++=+=.
T Consensus 51 ~~lDiGSGaGfPGipLaI~~-p~~~~~LvEs~~KK~~FL~~~~~~L~L~n-v~v~~~R~E~--~~~~~~fd~v~aRAv~- 125 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIAR-PDLQVTLVESVGKKVAFLKEVVRELGLSN-VEVINGRAEE--PEYRESFDVVTARAVA- 125 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH--TTSEEEEEESSHHHHHHHHHHHHHHT-SS-EEEEES-HHH--TTTTT-EEEEEEESSS-
T ss_pred eEEecCCCCCChhHHHHHhC-CCCcEEEEeCCchHHHHHHHHHHHhCCCC-EEEEEeeecc--cccCCCccEEEeehhc-
Confidence 79999999998888887654 57899999999999999999999999997 9999999988 2235789999963332
Q ss_pred CCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcC
Q 009708 418 GLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTC 466 (528)
Q Consensus 418 g~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTc 466 (528)
.+ ..++.-+..++++||+++..--
T Consensus 126 ------------------~l-------~~l~~~~~~~l~~~G~~l~~KG 149 (184)
T PF02527_consen 126 ------------------PL-------DKLLELARPLLKPGGRLLAYKG 149 (184)
T ss_dssp ------------------SH-------HHHHHHHGGGEEEEEEEEEEES
T ss_pred ------------------CH-------HHHHHHHHHhcCCCCEEEEEcC
Confidence 11 2358889999999999885543
No 225
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=98.13 E-value=5.6e-06 Score=78.85 Aligned_cols=113 Identities=25% Similarity=0.389 Sum_probs=78.9
Q ss_pred CeEEEeCCccchHHHHHHHHcCC----Cc----EEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccc------c
Q 009708 337 QSIVDCCAAPGGKTLYMASCLSG----QG----LVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD------N 402 (528)
Q Consensus 337 ~~VLDl~aG~G~kt~~la~~~~~----~~----~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~------~ 402 (528)
.+|+|+||+||.++..+++.+-. .+ .|+|||+.+-. .+++ |..+++|++.... .
T Consensus 43 ~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma-----------PI~G-V~qlq~DIT~~stae~Ii~h 110 (294)
T KOG1099|consen 43 KRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA-----------PIEG-VIQLQGDITSASTAEAIIEH 110 (294)
T ss_pred hHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC-----------ccCc-eEEeecccCCHhHHHHHHHH
Confidence 47999999999999999987743 22 39999997543 5665 6678999887432 1
Q ss_pred C-CCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHH--HHHHHHhccCcCCCEEEEEcCCCCchhhHHHH
Q 009708 403 S-TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQD--ELLDAASLLVKPGGVLVYSTCSIDPEENEERV 477 (528)
Q Consensus 403 ~-~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~--~lL~~a~~~LkpGG~LvysTcs~~~~Ene~~v 477 (528)
+ .++.|+|+||...--+|+ .++.++...|. .-|.-+..+|||||.+| -.++..++...+
T Consensus 111 fggekAdlVvcDGAPDvTGl-------------Hd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FV---aKifRg~~tslL 172 (294)
T KOG1099|consen 111 FGGEKADLVVCDGAPDVTGL-------------HDLDEYVQAQLLLAALNIATCVLKPGGSFV---AKIFRGRDTSLL 172 (294)
T ss_pred hCCCCccEEEeCCCCCcccc-------------ccHHHHHHHHHHHHHHHHHhheecCCCeee---hhhhccCchHHH
Confidence 2 468999999966555666 56666643332 23445567899999999 566666655443
No 226
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.13 E-value=9.8e-06 Score=77.30 Aligned_cols=72 Identities=19% Similarity=0.231 Sum_probs=53.6
Q ss_pred CCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccc-cccCCCCCCEEEE
Q 009708 334 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF-ADNSTVKCDKVLL 412 (528)
Q Consensus 334 ~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~-~~~~~~~fD~Vl~ 412 (528)
.++++|||+|||+|..+..++... ...++++|+++.+++.++. .+ ++++++|+... .....++||.|++
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~~--~~~~~giD~s~~~i~~a~~----~~----~~~~~~d~~~~l~~~~~~sfD~Vi~ 81 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDEK--QVRGYGIEIDQDGVLACVA----RG----VNVIQGDLDEGLEAFPDKSFDYVIL 81 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhcc--CCcEEEEeCCHHHHHHHHH----cC----CeEEEEEhhhcccccCCCCcCEEEE
Confidence 367799999999999998887652 3578999999999988753 12 56778887652 2223468999998
Q ss_pred cCC
Q 009708 413 DAP 415 (528)
Q Consensus 413 D~P 415 (528)
..+
T Consensus 82 ~~~ 84 (194)
T TIGR02081 82 SQT 84 (194)
T ss_pred hhH
Confidence 643
No 227
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=98.12 E-value=1.2e-05 Score=81.66 Aligned_cols=90 Identities=22% Similarity=0.327 Sum_probs=74.2
Q ss_pred HHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccC---
Q 009708 327 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS--- 403 (528)
Q Consensus 327 ~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~--- 403 (528)
+.+++.+++|+.++|+-+|-||-|..+++.+++ ++|+|+|.++.++..++++++.. .++++++++++.++....
T Consensus 12 vl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~-g~vigiD~D~~Al~~ak~~L~~~--~~R~~~i~~nF~~l~~~l~~~ 88 (305)
T TIGR00006 12 VVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGT-GRLIGIDRDPQAIAFAKERLSDF--EGRVVLIHDNFANFFEHLDEL 88 (305)
T ss_pred HHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHHHhhc--CCcEEEEeCCHHHHHHHHHhc
Confidence 445677889999999999999999999998764 99999999999999999988765 346999999998865422
Q ss_pred -CCCCCEEEEcCCCCCC
Q 009708 404 -TVKCDKVLLDAPCSGL 419 (528)
Q Consensus 404 -~~~fD~Vl~D~Pcsg~ 419 (528)
..++|.|++|-=+|+.
T Consensus 89 ~~~~vDgIl~DLGvSS~ 105 (305)
T TIGR00006 89 LVTKIDGILVDLGVSSP 105 (305)
T ss_pred CCCcccEEEEeccCCHh
Confidence 2469999999666543
No 228
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.12 E-value=2.5e-05 Score=75.12 Aligned_cols=121 Identities=20% Similarity=0.259 Sum_probs=86.4
Q ss_pred EEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEcCCCCC
Q 009708 339 IVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSG 418 (528)
Q Consensus 339 VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~Pcsg 418 (528)
|.|+||--|...++|++. +...+++|+|+++.-++.+++++++.|+.++|++..+|....... .+..|.|++ .|
T Consensus 1 vaDIGtDHgyLpi~L~~~-~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~-~e~~d~ivI----AG 74 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKN-GKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKP-GEDVDTIVI----AG 74 (205)
T ss_dssp EEEET-STTHHHHHHHHT-TSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--G-GG---EEEE----EE
T ss_pred CceeccchhHHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCC-CCCCCEEEE----ec
Confidence 689999999999999986 334579999999999999999999999999999999998775432 233788886 46
Q ss_pred CccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchhhHHHHHHHHhhCCCceEec
Q 009708 419 LGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDP 491 (528)
Q Consensus 419 ~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~Ene~~v~~~l~~~~~~~~~~ 491 (528)
.|- .+-.+||+.....++....||. .|..+...+..||..+ +|.+..
T Consensus 75 MGG--------------------~lI~~ILe~~~~~~~~~~~lIL-----qP~~~~~~LR~~L~~~-gf~I~~ 121 (205)
T PF04816_consen 75 MGG--------------------ELIIEILEAGPEKLSSAKRLIL-----QPNTHAYELRRWLYEN-GFEIID 121 (205)
T ss_dssp E-H--------------------HHHHHHHHHTGGGGTT--EEEE-----EESS-HHHHHHHHHHT-TEEEEE
T ss_pred CCH--------------------HHHHHHHHhhHHHhccCCeEEE-----eCCCChHHHHHHHHHC-CCEEEE
Confidence 554 2345678888888877667775 3455667888999887 466644
No 229
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.11 E-value=2.3e-05 Score=77.25 Aligned_cols=115 Identities=18% Similarity=0.218 Sum_probs=82.9
Q ss_pred HHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCC
Q 009708 326 LVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTV 405 (528)
Q Consensus 326 l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~ 405 (528)
.+....+..+..+|+|+|+|.|..+..+++.. +..+++.+|. |..++.+++ .++|+++.+|+++- .+.
T Consensus 91 ~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~v~~~~~~-------~~rv~~~~gd~f~~---~P~ 158 (241)
T PF00891_consen 91 ILLEAFDFSGFKTVVDVGGGSGHFAIALARAY-PNLRATVFDL-PEVIEQAKE-------ADRVEFVPGDFFDP---LPV 158 (241)
T ss_dssp HHHHHSTTTTSSEEEEET-TTSHHHHHHHHHS-TTSEEEEEE--HHHHCCHHH-------TTTEEEEES-TTTC---CSS
T ss_pred hhhccccccCccEEEeccCcchHHHHHHHHHC-CCCcceeecc-Hhhhhcccc-------ccccccccccHHhh---hcc
Confidence 34455566667799999999999999999884 5789999998 888887777 45799999999832 234
Q ss_pred CCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCC--CEEEEEcCCCCchhh
Q 009708 406 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPG--GVLVYSTCSIDPEEN 473 (528)
Q Consensus 406 ~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpG--G~LvysTcs~~~~En 473 (528)
+|+|++- . +-+.++.++... ||+++...|+|| |+|++....+.....
T Consensus 159 -~D~~~l~------~-------vLh~~~d~~~~~-------iL~~~~~al~pg~~g~llI~e~~~~~~~~ 207 (241)
T PF00891_consen 159 -ADVYLLR------H-------VLHDWSDEDCVK-------ILRNAAAALKPGKDGRLLIIEMVLPDDRT 207 (241)
T ss_dssp -ESEEEEE------S-------SGGGS-HHHHHH-------HHHHHHHHSEECTTEEEEEEEEEECSSSS
T ss_pred -ccceeee------h-------hhhhcchHHHHH-------HHHHHHHHhCCCCCCeEEEEeeccCCCCC
Confidence 9999971 1 222344455544 599999999999 999988776554433
No 230
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.11 E-value=1.2e-05 Score=80.44 Aligned_cols=116 Identities=20% Similarity=0.200 Sum_probs=79.2
Q ss_pred HHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCc-----cEEEEcCcccc
Q 009708 324 AGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNS-----VIRTIHADLRT 398 (528)
Q Consensus 324 s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~-----~i~~~~~D~~~ 398 (528)
|+|+-... ++++.++|||||-||-.+-.-.. +-+.++++||..-.++.++.+.+.+.-.. .+.++.+|.+.
T Consensus 108 s~LI~~y~--~~~~~~~~LgCGKGGDLlKw~kA--gI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~ 183 (389)
T KOG1975|consen 108 SVLINLYT--KRGDDVLDLGCGKGGDLLKWDKA--GIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFK 183 (389)
T ss_pred HHHHHHHh--ccccccceeccCCcccHhHhhhh--cccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccch
Confidence 55665554 46889999999999988765542 45789999999999999998776542211 25788898865
Q ss_pred cc-----ccCCCCCCEEEEcCCCCCCccccCCchhhccC-CHHHHHHHHHHHHHHHHHHhccCcCCCEEE
Q 009708 399 FA-----DNSTVKCDKVLLDAPCSGLGVLSKRADLRWNR-RLEDMEELKILQDELLDAASLLVKPGGVLV 462 (528)
Q Consensus 399 ~~-----~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~-~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lv 462 (528)
-. +....+||+|-|--.| +|.. +.+.. +.+|.++...|||||+++
T Consensus 184 ~~l~d~~e~~dp~fDivScQF~~------------HYaFetee~a-------r~~l~Nva~~LkpGG~FI 234 (389)
T KOG1975|consen 184 ERLMDLLEFKDPRFDIVSCQFAF------------HYAFETEESA-------RIALRNVAKCLKPGGVFI 234 (389)
T ss_pred hHHHHhccCCCCCcceeeeeeeE------------eeeeccHHHH-------HHHHHHHHhhcCCCcEEE
Confidence 21 1112349988654333 2222 22222 336999999999999988
No 231
>PRK04148 hypothetical protein; Provisional
Probab=98.06 E-value=4.5e-05 Score=67.95 Aligned_cols=76 Identities=12% Similarity=-0.003 Sum_probs=56.7
Q ss_pred HHHHhcCCCCCCeEEEeCCccch-HHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCC
Q 009708 326 LVVAVVDPQPGQSIVDCCAAPGG-KTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNST 404 (528)
Q Consensus 326 l~~~~l~~~~g~~VLDl~aG~G~-kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~ 404 (528)
++...+....+.+|||+|||+|. .+..+++. +..|+|+|+++.+++.++++ + +.++.+|.++.....-
T Consensus 7 ~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~---G~~ViaIDi~~~aV~~a~~~----~----~~~v~dDlf~p~~~~y 75 (134)
T PRK04148 7 FIAENYEKGKNKKIVELGIGFYFKVAKKLKES---GFDVIVIDINEKAVEKAKKL----G----LNAFVDDLFNPNLEIY 75 (134)
T ss_pred HHHHhcccccCCEEEEEEecCCHHHHHHHHHC---CCEEEEEECCHHHHHHHHHh----C----CeEEECcCCCCCHHHH
Confidence 34444444456789999999996 77777753 46999999999988877654 2 5678999988665444
Q ss_pred CCCCEEEE
Q 009708 405 VKCDKVLL 412 (528)
Q Consensus 405 ~~fD~Vl~ 412 (528)
+.+|+|..
T Consensus 76 ~~a~liys 83 (134)
T PRK04148 76 KNAKLIYS 83 (134)
T ss_pred hcCCEEEE
Confidence 67999985
No 232
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.01 E-value=4.7e-05 Score=73.38 Aligned_cols=98 Identities=19% Similarity=0.235 Sum_probs=79.4
Q ss_pred CCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEcCC
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAP 415 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~P 415 (528)
+.+|+|+|+|.|-=++-+|- +.++.+|+-+|....++..++.-.+.+|++| ++++++.+.++...... ||.|.+=+=
T Consensus 68 ~~~~~DIGSGaGfPGipLAI-~~p~~~vtLles~~Kk~~FL~~~~~eL~L~n-v~i~~~RaE~~~~~~~~-~D~vtsRAv 144 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAI-AFPDLKVTLLESLGKKIAFLREVKKELGLEN-VEIVHGRAEEFGQEKKQ-YDVVTSRAV 144 (215)
T ss_pred CCEEEEeCCCCCCchhhHHH-hccCCcEEEEccCchHHHHHHHHHHHhCCCC-eEEehhhHhhccccccc-CcEEEeehc
Confidence 57999999999999988884 3557789999999999999999999999997 99999999887754222 999986322
Q ss_pred CCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEE
Q 009708 416 CSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLV 462 (528)
Q Consensus 416 csg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lv 462 (528)
+ .+ ..+.+-+..++|+||.++
T Consensus 145 a----------------------~L----~~l~e~~~pllk~~g~~~ 165 (215)
T COG0357 145 A----------------------SL----NVLLELCLPLLKVGGGFL 165 (215)
T ss_pred c----------------------ch----HHHHHHHHHhcccCCcch
Confidence 2 11 234777899999988875
No 233
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.00 E-value=1.6e-05 Score=76.73 Aligned_cols=130 Identities=13% Similarity=0.199 Sum_probs=78.0
Q ss_pred HHHHhcCCCCCC-eEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCC
Q 009708 326 LVVAVVDPQPGQ-SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNST 404 (528)
Q Consensus 326 l~~~~l~~~~g~-~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~ 404 (528)
+.-.+....++. .++|+|||+|-.+..+|.+. .+|+|+|+|+.+|+.+++.....-+.........+..++... .
T Consensus 23 w~~~ia~~~~~h~~a~DvG~G~Gqa~~~iae~~---k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~-e 98 (261)
T KOG3010|consen 23 WFKKIASRTEGHRLAWDVGTGNGQAARGIAEHY---KEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGG-E 98 (261)
T ss_pred HHHHHHhhCCCcceEEEeccCCCcchHHHHHhh---hhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCC-C
Confidence 334444455555 79999999996666777663 479999999999998876543322221233444444444422 4
Q ss_pred CCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCC-EEE---EEcCCCCchhhHHHHHHH
Q 009708 405 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGG-VLV---YSTCSIDPEENEERVEAF 480 (528)
Q Consensus 405 ~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG-~Lv---ysTcs~~~~Ene~~v~~~ 480 (528)
+++|+|++ +-| ++|- ++ .++.+.+.++||+.| ++. |.+-.+...|-..+...+
T Consensus 99 ~SVDlI~~-Aqa-----------~HWF----dl-------e~fy~~~~rvLRk~Gg~iavW~Y~dd~v~~pE~dsv~~r~ 155 (261)
T KOG3010|consen 99 ESVDLITA-AQA-----------VHWF----DL-------ERFYKEAYRVLRKDGGLIAVWNYNDDFVDWPEFDSVMLRL 155 (261)
T ss_pred cceeeehh-hhh-----------HHhh----ch-------HHHHHHHHHHcCCCCCEEEEEEccCCCcCCHHHHHHHHHH
Confidence 78999985 333 2342 22 345888999999877 433 333233334444444444
Q ss_pred Hh
Q 009708 481 LL 482 (528)
Q Consensus 481 l~ 482 (528)
..
T Consensus 156 ~~ 157 (261)
T KOG3010|consen 156 YD 157 (261)
T ss_pred hh
Confidence 44
No 234
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=97.98 E-value=3.1e-05 Score=69.43 Aligned_cols=116 Identities=24% Similarity=0.330 Sum_probs=76.5
Q ss_pred EEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCC-CCCEEEEcCCCCCCccccCCchhhccCCHHHHHHH
Q 009708 362 LVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTV-KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEEL 440 (528)
Q Consensus 362 ~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~-~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l 440 (528)
+|+|+||.+++++..+++++..++.+++++++..-.++....+. ++|.++.| .|.+.... +.+...
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFN-----LGYLPggD--------k~i~T~ 67 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFN-----LGYLPGGD--------KSITTK 67 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEE-----ESB-CTS---------TTSB--
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEE-----CCcCCCCC--------CCCCcC
Confidence 69999999999999999999999988899999887777654444 79999876 33333211 111222
Q ss_pred HHHHHHHHHHHhccCcCCCEEEEEcCCCCch--hhHHHHHHHHhhCC--CceEe
Q 009708 441 KILQDELLDAASLLVKPGGVLVYSTCSIDPE--ENEERVEAFLLRHP--EFSID 490 (528)
Q Consensus 441 ~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~--Ene~~v~~~l~~~~--~~~~~ 490 (528)
.+.-..-|+.++++|+|||.|+.....-|++ |..+.|..|+..-+ .|.+.
T Consensus 68 ~~TTl~Al~~al~lL~~gG~i~iv~Y~GH~gG~eE~~av~~~~~~L~~~~~~V~ 121 (140)
T PF06962_consen 68 PETTLKALEAALELLKPGGIITIVVYPGHPGGKEESEAVEEFLASLDQKEFNVL 121 (140)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEEEE--STCHHHHHHHHHHHHHHTS-TTTEEEE
T ss_pred cHHHHHHHHHHHHhhccCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCcceEEEE
Confidence 2333445899999999999999887777874 33456788888754 45443
No 235
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.89 E-value=4.1e-05 Score=78.29 Aligned_cols=103 Identities=22% Similarity=0.253 Sum_probs=82.9
Q ss_pred CCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEcCC
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAP 415 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~P 415 (528)
..+|+|..||+|.=++.+|...+.. +|+..|+||.+++.+++|++.+...+ ..+++.|+..+.......||+|=+||=
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~-~v~lNDisp~Avelik~Nv~~N~~~~-~~v~n~DAN~lm~~~~~~fd~IDiDPF 130 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVV-KVVLNDISPKAVELIKENVRLNSGED-AEVINKDANALLHELHRAFDVIDIDPF 130 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCcc-EEEEccCCHHHHHHHHHHHHhcCccc-ceeecchHHHHHHhcCCCccEEecCCC
Confidence 5689999999999999999876543 89999999999999999999994444 566778988776554578999999975
Q ss_pred CCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 416 CSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 416 csg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
-|- .-+++.|.+.++.||+|. .|||
T Consensus 131 GSP--------------------------aPFlDaA~~s~~~~G~l~-vTAT 155 (380)
T COG1867 131 GSP--------------------------APFLDAALRSVRRGGLLC-VTAT 155 (380)
T ss_pred CCC--------------------------chHHHHHHHHhhcCCEEE-EEec
Confidence 432 125899999999999765 4555
No 236
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=97.85 E-value=5.5e-05 Score=73.96 Aligned_cols=40 Identities=23% Similarity=0.312 Sum_probs=34.5
Q ss_pred CCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHH
Q 009708 334 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRI 375 (528)
Q Consensus 334 ~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~ 375 (528)
.+|.+|||+|||||++|..+++. +..+|+|+|+++.++..
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~--ga~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQK--GAKEVYGVDVGYNQLAE 113 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHc--CCCEEEEEeCCHHHHHH
Confidence 36779999999999999999985 46799999999987754
No 237
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=97.85 E-value=5.4e-05 Score=70.01 Aligned_cols=82 Identities=15% Similarity=0.192 Sum_probs=59.0
Q ss_pred EEEcCChHHHHHHHHHHHHcC--CCccEEEEcCccccccccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHH
Q 009708 364 YAIDINKGRLRILNETAKLHQ--VNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELK 441 (528)
Q Consensus 364 ~avD~s~~~l~~~~~n~~~~g--~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~ 441 (528)
+|+|+|+.+++.++++.+..+ ..++++++++|+.+++. ..++||.|++. .+. +.-+
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~-~~~~fD~v~~~-----~~l-~~~~--------------- 58 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPF-DDCEFDAVTMG-----YGL-RNVV--------------- 58 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCC-CCCCeeEEEec-----chh-hcCC---------------
Confidence 489999999999987765432 22358999999988753 34689999862 222 1111
Q ss_pred HHHHHHHHHHhccCcCCCEEEEEcCCC
Q 009708 442 ILQDELLDAASLLVKPGGVLVYSTCSI 468 (528)
Q Consensus 442 ~~q~~lL~~a~~~LkpGG~LvysTcs~ 468 (528)
...+.|+++.++|||||.|++...+.
T Consensus 59 -d~~~~l~ei~rvLkpGG~l~i~d~~~ 84 (160)
T PLN02232 59 -DRLRAMKEMYRVLKPGSRVSILDFNK 84 (160)
T ss_pred -CHHHHHHHHHHHcCcCeEEEEEECCC
Confidence 12456999999999999999876664
No 238
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.83 E-value=4.8e-05 Score=76.16 Aligned_cols=88 Identities=19% Similarity=0.229 Sum_probs=71.5
Q ss_pred hHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc
Q 009708 323 SAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN 402 (528)
Q Consensus 323 ~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~ 402 (528)
...-++..+++.+++.|||+|+|+|..|..+++. ..+|+++|+++..++.+++... ...+++++++|+..+...
T Consensus 18 ~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~---~~~v~~vE~d~~~~~~L~~~~~---~~~~~~vi~~D~l~~~~~ 91 (262)
T PF00398_consen 18 IADKIVDALDLSEGDTVLEIGPGPGALTRELLKR---GKRVIAVEIDPDLAKHLKERFA---SNPNVEVINGDFLKWDLY 91 (262)
T ss_dssp HHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHH---SSEEEEEESSHHHHHHHHHHCT---TCSSEEEEES-TTTSCGG
T ss_pred HHHHHHHhcCCCCCCEEEEeCCCCccchhhHhcc---cCcceeecCcHhHHHHHHHHhh---hcccceeeecchhccccH
Confidence 4566777888889999999999999999999987 3799999999999999998765 233599999999987654
Q ss_pred C--CCCCCEEEEcCCC
Q 009708 403 S--TVKCDKVLLDAPC 416 (528)
Q Consensus 403 ~--~~~fD~Vl~D~Pc 416 (528)
. ......|+.+.|+
T Consensus 92 ~~~~~~~~~vv~NlPy 107 (262)
T PF00398_consen 92 DLLKNQPLLVVGNLPY 107 (262)
T ss_dssp GHCSSSEEEEEEEETG
T ss_pred HhhcCCceEEEEEecc
Confidence 2 2356689999998
No 239
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=97.82 E-value=0.00016 Score=69.59 Aligned_cols=120 Identities=19% Similarity=0.191 Sum_probs=69.6
Q ss_pred HHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHH-------HcCC-CccEEEEcCccccc
Q 009708 328 VAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAK-------LHQV-NSVIRTIHADLRTF 399 (528)
Q Consensus 328 ~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~-------~~g~-~~~i~~~~~D~~~~ 399 (528)
...+++.+++.++|+|||.|...+++|... +..+.+|||+.+...+.++.+.+ ..|. ...+++.++|+.+.
T Consensus 35 l~~~~l~~~dvF~DlGSG~G~~v~~aal~~-~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~ 113 (205)
T PF08123_consen 35 LDELNLTPDDVFYDLGSGVGNVVFQAALQT-GCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDP 113 (205)
T ss_dssp HHHTT--TT-EEEEES-TTSHHHHHHHHHH---SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTH
T ss_pred HHHhCCCCCCEEEECCCCCCHHHHHHHHHc-CCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCcccc
Confidence 355678899999999999999998888764 45679999999999987765443 3444 23578889998764
Q ss_pred ccc--CCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchh
Q 009708 400 ADN--STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEE 472 (528)
Q Consensus 400 ~~~--~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~E 472 (528)
... .-...|+|++|--|.+ .++... |...+.-||+|-++| ++-++.+..
T Consensus 114 ~~~~~~~s~AdvVf~Nn~~F~----------------~~l~~~-------L~~~~~~lk~G~~II-s~~~~~~~~ 164 (205)
T PF08123_consen 114 DFVKDIWSDADVVFVNNTCFD----------------PDLNLA-------LAELLLELKPGARII-STKPFCPRR 164 (205)
T ss_dssp HHHHHHGHC-SEEEE--TTT-----------------HHHHHH-------HHHHHTTS-TT-EEE-ESS-SS-TT
T ss_pred HhHhhhhcCCCEEEEeccccC----------------HHHHHH-------HHHHHhcCCCCCEEE-ECCCcCCCC
Confidence 321 1134799999887742 112111 345556788876655 666666543
No 240
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=97.78 E-value=0.00029 Score=67.26 Aligned_cols=144 Identities=19% Similarity=0.260 Sum_probs=95.7
Q ss_pred HHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc--
Q 009708 325 GLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-- 402 (528)
Q Consensus 325 ~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~-- 402 (528)
..+..++. ..+.+||++|||+|--+.++|+.++ .-+-.-.|.++..+..++..+...+++|....+..|+......
T Consensus 16 ~vL~~~l~-~~~~~vLEiaSGtGqHa~~FA~~lP-~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~ 93 (204)
T PF06080_consen 16 EVLKQYLP-DSGTRVLEIASGTGQHAVYFAQALP-HLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWE 93 (204)
T ss_pred HHHHHHhC-ccCceEEEEcCCccHHHHHHHHHCC-CCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccc
Confidence 34444443 2333699999999999999999986 4677788999999999999999989887656667777654221
Q ss_pred -----CCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEE-EEcCC----CCchh
Q 009708 403 -----STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLV-YSTCS----IDPEE 472 (528)
Q Consensus 403 -----~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lv-ysTcs----~~~~E 472 (528)
....||.|++--- + ++..- ..-..++..+.++|++||.|+ |--.. +.++-
T Consensus 94 ~~~~~~~~~~D~i~~~N~------l-------------HI~p~-~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~S 153 (204)
T PF06080_consen 94 LPAPLSPESFDAIFCINM------L-------------HISPW-SAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSES 153 (204)
T ss_pred cccccCCCCcceeeehhH------H-------------HhcCH-HHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcH
Confidence 1357999985111 0 11111 112457999999999999977 44333 33444
Q ss_pred hHHHHHHHHhh-CCCceEec
Q 009708 473 NEERVEAFLLR-HPEFSIDP 491 (528)
Q Consensus 473 ne~~v~~~l~~-~~~~~~~~ 491 (528)
|+ .+...|+. .|.+-+-.
T Consensus 154 N~-~FD~sLr~rdp~~GiRD 172 (204)
T PF06080_consen 154 NA-AFDASLRSRDPEWGIRD 172 (204)
T ss_pred HH-HHHHHHhcCCCCcCccC
Confidence 44 56666764 46554433
No 241
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=97.78 E-value=0.00011 Score=72.17 Aligned_cols=93 Identities=24% Similarity=0.267 Sum_probs=64.7
Q ss_pred CCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEcCC
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAP 415 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~P 415 (528)
..++||+|||-|+.|..++..+ .+|++.|.|+.|...++ +-|.+ ++..| ++.. .+.+||+|.|
T Consensus 95 ~~~lLDlGAGdG~VT~~l~~~f---~~v~aTE~S~~Mr~rL~----~kg~~----vl~~~--~w~~-~~~~fDvIsc--- 157 (265)
T PF05219_consen 95 DKSLLDLGAGDGEVTERLAPLF---KEVYATEASPPMRWRLS----KKGFT----VLDID--DWQQ-TDFKFDVISC--- 157 (265)
T ss_pred CCceEEecCCCcHHHHHHHhhc---ceEEeecCCHHHHHHHH----hCCCe----EEehh--hhhc-cCCceEEEee---
Confidence 4689999999999999999875 46999999999965544 44654 22222 2222 2357999974
Q ss_pred CCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 416 CSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 416 csg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
.-++.|. .....+|+.+.+.|+|+|+++.+
T Consensus 158 ---LNvLDRc----------------~~P~~LL~~i~~~l~p~G~lilA 187 (265)
T PF05219_consen 158 ---LNVLDRC----------------DRPLTLLRDIRRALKPNGRLILA 187 (265)
T ss_pred ---hhhhhcc----------------CCHHHHHHHHHHHhCCCCEEEEE
Confidence 2223232 12345799999999999998855
No 242
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.78 E-value=0.00017 Score=73.67 Aligned_cols=72 Identities=25% Similarity=0.248 Sum_probs=54.7
Q ss_pred CCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEE
Q 009708 333 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 412 (528)
Q Consensus 333 ~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~ 412 (528)
+.+|.++||+||+|||+|-.++++ +.+|+|||..+-. ..+. . +.+|+.+..|...+.+. .+.+|.|+|
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~r---G~~V~AVD~g~l~-----~~L~--~-~~~V~h~~~d~fr~~p~-~~~vDwvVc 276 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRR---GMFVTAVDNGPMA-----QSLM--D-TGQVEHLRADGFKFRPP-RKNVDWLVC 276 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHc---CCEEEEEechhcC-----Hhhh--C-CCCEEEEeccCcccCCC-CCCCCEEEE
Confidence 357999999999999999999986 4699999965421 2221 1 33588888888776543 468999999
Q ss_pred cCCC
Q 009708 413 DAPC 416 (528)
Q Consensus 413 D~Pc 416 (528)
|.-|
T Consensus 277 Dmve 280 (357)
T PRK11760 277 DMVE 280 (357)
T ss_pred eccc
Confidence 9887
No 243
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=97.76 E-value=0.0001 Score=74.41 Aligned_cols=146 Identities=13% Similarity=0.036 Sum_probs=77.2
Q ss_pred CCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHc-CCCccEEEEcCccc----cccccCCCCCCEE
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLH-QVNSVIRTIHADLR----TFADNSTVKCDKV 410 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~-g~~~~i~~~~~D~~----~~~~~~~~~fD~V 410 (528)
.-++||+|+|.-.+=-.|+..+. +.+++|.|+++..++.|++|++++ ++.++|+++...-. .......+.||..
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~-~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dft 181 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLY-GWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFT 181 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEE
T ss_pred ceEeecCCccHHHHHHHHhhhhc-CCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEE
Confidence 34799999999876544444444 589999999999999999999999 99988988755322 1111224689999
Q ss_pred EEcCCCCCCccc------cCC------------chhhcc-CCHHHHHH--HHHHHHHHHHHHhccCcCCCEEEEEcCCCC
Q 009708 411 LLDAPCSGLGVL------SKR------------ADLRWN-RRLEDMEE--LKILQDELLDAASLLVKPGGVLVYSTCSID 469 (528)
Q Consensus 411 l~D~Pcsg~G~~------~~~------------pd~~~~-~~~~~~~~--l~~~q~~lL~~a~~~LkpGG~LvysTcs~~ 469 (528)
+||||...+.-- ++. |..-.. ...+-..+ =...-.+++++...+-+ ...+| |+=+.
T Consensus 182 mCNPPFy~s~~e~~~~~~~k~~nl~~~~~~~~~p~~~~~G~~~El~~~GGEv~FV~rMI~ES~~~~~--~v~Wf-Tsmvg 258 (299)
T PF05971_consen 182 MCNPPFYSSQEEAEAGTERKWKNLGRPNKKRSPPKLNFTGQSNELWCEGGEVAFVKRMIKESLQLKD--QVRWF-TSMVG 258 (299)
T ss_dssp EE-----SS--------------------------------TTTTHHHHTHHHHHHHHHHHHHHHGG--GEEEE-EEEES
T ss_pred ecCCccccChhhhcccccccccccccccccccCccccCCCCcceEEcCCccHHHHHHHHHHHHHhCC--CcEEE-eeccc
Confidence 999999654310 110 100000 00000000 01222345666555422 34444 55677
Q ss_pred chhhHHHHHHHHhhCC
Q 009708 470 PEENEERVEAFLLRHP 485 (528)
Q Consensus 470 ~~Ene~~v~~~l~~~~ 485 (528)
..+|-..+...|++..
T Consensus 259 KkssL~~l~~~L~~~~ 274 (299)
T PF05971_consen 259 KKSSLKPLKKELKKLG 274 (299)
T ss_dssp SGGGHHHHHHHHHHTT
T ss_pred CcccHHHHHHHHHhcC
Confidence 8888888888888763
No 244
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=97.72 E-value=7.6e-05 Score=71.27 Aligned_cols=152 Identities=26% Similarity=0.343 Sum_probs=78.8
Q ss_pred cceeEeecchHHHHHH-hc-CCCCCCeEEEeCCccchHHHHHHHHc---CCCcEEEEEcCChHHHHHHHHHHHHcCCCcc
Q 009708 314 EGLCAVQDESAGLVVA-VV-DPQPGQSIVDCCAAPGGKTLYMASCL---SGQGLVYAIDINKGRLRILNETAKLHQVNSV 388 (528)
Q Consensus 314 ~G~~~~Qd~~s~l~~~-~l-~~~~g~~VLDl~aG~G~kt~~la~~~---~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~ 388 (528)
.|.-.+|.+.=+++.. ++ ..+| +.|+++|...||-++..|..+ ++.++|++||++....... ..+.+.+..+
T Consensus 10 ~G~pi~q~P~Dm~~~qeli~~~kP-d~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~--a~e~hp~~~r 86 (206)
T PF04989_consen 10 LGRPIIQYPQDMVAYQELIWELKP-DLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRK--AIESHPMSPR 86 (206)
T ss_dssp TTEEESS-HHHHHHHHHHHHHH---SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG----TT
T ss_pred CCeehhcCHHHHHHHHHHHHHhCC-CeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchH--HHhhccccCc
Confidence 4555666554322221 11 2333 599999999999999887644 4678999999965444221 1222344567
Q ss_pred EEEEcCccccccccC-------CCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEE
Q 009708 389 IRTIHADLRTFADNS-------TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVL 461 (528)
Q Consensus 389 i~~~~~D~~~~~~~~-------~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~L 461 (528)
|+++++|..+..... .....+|+.|.--+.. ++ ...|+....++++|+++
T Consensus 87 I~~i~Gds~d~~~~~~v~~~~~~~~~vlVilDs~H~~~----------------hv-------l~eL~~y~plv~~G~Y~ 143 (206)
T PF04989_consen 87 ITFIQGDSIDPEIVDQVRELASPPHPVLVILDSSHTHE----------------HV-------LAELEAYAPLVSPGSYL 143 (206)
T ss_dssp EEEEES-SSSTHHHHTSGSS----SSEEEEESS----S----------------SH-------HHHHHHHHHT--TT-EE
T ss_pred eEEEECCCCCHHHHHHHHHhhccCCceEEEECCCccHH----------------HH-------HHHHHHhCccCCCCCEE
Confidence 999999987643211 2345588888654221 11 22367788999999998
Q ss_pred EEEcCC-------------CCchhh-HHHHHHHHhhCCCceEec
Q 009708 462 VYSTCS-------------IDPEEN-EERVEAFLLRHPEFSIDP 491 (528)
Q Consensus 462 vysTcs-------------~~~~En-e~~v~~~l~~~~~~~~~~ 491 (528)
|.-.-. +.+..| ...|.+||++|++|++..
T Consensus 144 IVeDt~~~~~~~~~~~~~~w~~g~~p~~av~~fL~~~~~f~iD~ 187 (206)
T PF04989_consen 144 IVEDTIIEDWPESWFPDRPWGPGNNPKTAVKEFLAEHPDFEIDT 187 (206)
T ss_dssp EETSHHHHHHHHS-------------HHHHHHHHHTTTTEEEET
T ss_pred EEEeccccccccccccccchhhhhHHHHHHHHHHHHCCCcEecc
Confidence 743211 222222 356889999999998876
No 245
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=97.70 E-value=8.1e-05 Score=71.87 Aligned_cols=107 Identities=19% Similarity=0.266 Sum_probs=72.4
Q ss_pred eEEEeCCccchHHHHHHHHcCCC--cEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccc---cCCCCCCEEEE
Q 009708 338 SIVDCCAAPGGKTLYMASCLSGQ--GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD---NSTVKCDKVLL 412 (528)
Q Consensus 338 ~VLDl~aG~G~kt~~la~~~~~~--~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~---~~~~~fD~Vl~ 412 (528)
+||++|||.|....-+.+- .+. -+|+|+|.|+.+++..+++..... .++.....|+..-.. ...+.+|.|.+
T Consensus 74 ~ilEvGCGvGNtvfPll~~-~~n~~l~v~acDfsp~Ai~~vk~~~~~~e--~~~~afv~Dlt~~~~~~~~~~~svD~it~ 150 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKT-SPNNRLKVYACDFSPRAIELVKKSSGYDE--SRVEAFVWDLTSPSLKEPPEEGSVDIITL 150 (264)
T ss_pred hheeeccCCCcccchhhhc-CCCCCeEEEEcCCChHHHHHHHhccccch--hhhcccceeccchhccCCCCcCccceEEE
Confidence 8999999999999888775 333 689999999999999999876654 235555556654321 12467887653
Q ss_pred cCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 413 DAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 413 D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
==--|. -+| +. +...+++..++|||||.|++..--
T Consensus 151 IFvLSA-----i~p--------ek-------~~~a~~nl~~llKPGG~llfrDYg 185 (264)
T KOG2361|consen 151 IFVLSA-----IHP--------EK-------MQSVIKNLRTLLKPGGSLLFRDYG 185 (264)
T ss_pred EEEEec-----cCh--------HH-------HHHHHHHHHHHhCCCcEEEEeecc
Confidence 111111 111 22 234588999999999999976543
No 246
>PRK00536 speE spermidine synthase; Provisional
Probab=97.64 E-value=0.0011 Score=66.22 Aligned_cols=104 Identities=10% Similarity=-0.028 Sum_probs=74.3
Q ss_pred cCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHc--CC-CccEEEEcCccccccccCCCCC
Q 009708 331 VDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLH--QV-NSVIRTIHADLRTFADNSTVKC 407 (528)
Q Consensus 331 l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~--g~-~~~i~~~~~D~~~~~~~~~~~f 407 (528)
..+.| .+||=+|.|-|+....+++. + .+|+-||+++..++.+++.+... ++ +.+++++.. +.....++|
T Consensus 69 ~h~~p-k~VLIiGGGDGg~~REvLkh--~-~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~----~~~~~~~~f 140 (262)
T PRK00536 69 TKKEL-KEVLIVDGFDLELAHQLFKY--D-THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ----LLDLDIKKY 140 (262)
T ss_pred hCCCC-CeEEEEcCCchHHHHHHHCc--C-CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh----hhhccCCcC
Confidence 33443 69999999999999999986 2 49999999999999999954432 22 245666641 222223689
Q ss_pred CEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCC
Q 009708 408 DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSID 469 (528)
Q Consensus 408 D~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~ 469 (528)
|+||+|-..+ .++.+.+.+.|+|||++|.-+.|..
T Consensus 141 DVIIvDs~~~---------------------------~~fy~~~~~~L~~~Gi~v~Qs~sp~ 175 (262)
T PRK00536 141 DLIICLQEPD---------------------------IHKIDGLKRMLKEDGVFISVAKHPL 175 (262)
T ss_pred CEEEEcCCCC---------------------------hHHHHHHHHhcCCCcEEEECCCCcc
Confidence 9999993220 2346778899999999997555533
No 247
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=97.64 E-value=0.00022 Score=78.11 Aligned_cols=150 Identities=14% Similarity=0.097 Sum_probs=95.3
Q ss_pred ccceeEeecchHHHHHHhcCCC--CCCeEEEeCCccchHHHHHHHHcC---CCcEEEEEcCChHHHHHHHHHHHHcCCCc
Q 009708 313 KEGLCAVQDESAGLVVAVVDPQ--PGQSIVDCCAAPGGKTLYMASCLS---GQGLVYAIDINKGRLRILNETAKLHQVNS 387 (528)
Q Consensus 313 ~~G~~~~Qd~~s~l~~~~l~~~--~g~~VLDl~aG~G~kt~~la~~~~---~~~~v~avD~s~~~l~~~~~n~~~~g~~~ 387 (528)
..|.++....-+.+++.++.+. |+..|.|+|||+|++.......+. ....+++.+....+...++.|+..++...
T Consensus 193 ~~g~~~Tp~~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~ 272 (501)
T TIGR00497 193 SGGEFFTPQDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDY 272 (501)
T ss_pred cCceeeCcHHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCc
Confidence 3677888777788888887764 678999999999998876554432 12468999999999999999988877642
Q ss_pred -cEEEEcCcccccccc-CCCCCCEEEEcCCCCCC---ccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEE
Q 009708 388 -VIRTIHADLRTFADN-STVKCDKVLLDAPCSGL---GVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLV 462 (528)
Q Consensus 388 -~i~~~~~D~~~~~~~-~~~~fD~Vl~D~Pcsg~---G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lv 462 (528)
......+|....... ...+||.|+.|||.+.. |......+..+......+..+......++.++...|++||+..
T Consensus 273 ~t~~~~~~dtl~~~d~~~~~~~D~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~a 352 (501)
T TIGR00497 273 ANFNIINADTLTTKEWENENGFEVVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAA 352 (501)
T ss_pred cccCcccCCcCCCccccccccCCEEeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEE
Confidence 123334444332111 13569999999999653 1111100111100000111122335567888999999999744
No 248
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=97.63 E-value=8.2e-05 Score=75.06 Aligned_cols=78 Identities=21% Similarity=0.310 Sum_probs=60.4
Q ss_pred eEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccC-CCCCCEEEEcCCC
Q 009708 338 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS-TVKCDKVLLDAPC 416 (528)
Q Consensus 338 ~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~-~~~fD~Vl~D~Pc 416 (528)
+|+|++||.||.+..+.+. +-..++++|+++.+++..+.|... .++++|+.++.... ...+|+|+.+|||
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~--G~~~v~a~e~~~~a~~~~~~N~~~-------~~~~~Di~~~~~~~~~~~~D~l~~gpPC 72 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKA--GFEIVAANEIDKSAAETYEANFPN-------KLIEGDITKIDEKDFIPDIDLLTGGFPC 72 (275)
T ss_pred cEEEEccCcchHHHHHHHc--CCEEEEEEeCCHHHHHHHHHhCCC-------CCccCccccCchhhcCCCCCEEEeCCCC
Confidence 6899999999998877654 344688999999999998887632 14677887765433 4579999999999
Q ss_pred CCCccccC
Q 009708 417 SGLGVLSK 424 (528)
Q Consensus 417 sg~G~~~~ 424 (528)
.+....++
T Consensus 73 q~fS~ag~ 80 (275)
T cd00315 73 QPFSIAGK 80 (275)
T ss_pred hhhhHHhh
Confidence 87766554
No 249
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=97.62 E-value=0.00082 Score=68.46 Aligned_cols=155 Identities=13% Similarity=0.160 Sum_probs=101.3
Q ss_pred CCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHH--HcC---C-CccEEEEcCccccccccCCCCC
Q 009708 334 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAK--LHQ---V-NSVIRTIHADLRTFADNSTVKC 407 (528)
Q Consensus 334 ~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~--~~g---~-~~~i~~~~~D~~~~~~~~~~~f 407 (528)
...++||=+|-|-|--..++.+. +.-.+|+-||.+|++++.++.+.. ..+ . +.+++++..|+.++.....+.|
T Consensus 288 ~~a~~vLvlGGGDGLAlRellky-P~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~f 366 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLKY-PQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMF 366 (508)
T ss_pred cccceEEEEcCCchHHHHHHHhC-CCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccc
Confidence 34578999999999888888775 546799999999999999995433 222 1 3479999999999987777899
Q ss_pred CEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC-CCchhhHHHHHHHHhhCCC
Q 009708 408 DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS-IDPEENEERVEAFLLRHPE 486 (528)
Q Consensus 408 D~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs-~~~~Ene~~v~~~l~~~~~ 486 (528)
|.||+|-|--.+-.+. .+.. .++-..+.+.|+++|.+|.-.-| +...+---.|..-+++- +
T Consensus 367 D~vIVDl~DP~tps~~------------rlYS-----~eFY~ll~~~l~e~Gl~VvQags~y~tp~vfw~i~aTik~A-G 428 (508)
T COG4262 367 DVVIVDLPDPSTPSIG------------RLYS-----VEFYRLLSRHLAETGLMVVQAGSPYFTPRVFWRIDATIKSA-G 428 (508)
T ss_pred cEEEEeCCCCCCcchh------------hhhh-----HHHHHHHHHhcCcCceEEEecCCCccCCceeeeehhHHHhC-c
Confidence 9999997753221111 1111 24566678889999999865554 33323222333444443 4
Q ss_pred ceEecCCCCCCCccccCCceEEE
Q 009708 487 FSIDPADGLVPSDFVTKHGFFFS 509 (528)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~g~~~~ 509 (528)
+...|.+...|. +...||.-.
T Consensus 429 ~~~~Pyhv~VPT--FGeWGf~l~ 449 (508)
T COG4262 429 YRVWPYHVHVPT--FGEWGFILA 449 (508)
T ss_pred ceeeeeEEecCc--ccccceeec
Confidence 666555444432 234455433
No 250
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=97.61 E-value=0.00012 Score=73.98 Aligned_cols=109 Identities=18% Similarity=0.167 Sum_probs=71.2
Q ss_pred CeEEEeCCccchHHHHHH----HHcCC---CcEEEEEcCChHHHHHHHHHH------------------HHc-----C--
Q 009708 337 QSIVDCCAAPGGKTLYMA----SCLSG---QGLVYAIDINKGRLRILNETA------------------KLH-----Q-- 384 (528)
Q Consensus 337 ~~VLDl~aG~G~kt~~la----~~~~~---~~~v~avD~s~~~l~~~~~n~------------------~~~-----g-- 384 (528)
-+|+.+||++|-=.-.+| +.++. ..+|+|.|+|+..++.|++-. .+. |
T Consensus 117 irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~ 196 (287)
T PRK10611 117 YRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGLV 196 (287)
T ss_pred EEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCceE
Confidence 589999999997443332 32221 357999999999999988751 000 1
Q ss_pred -----CCccEEEEcCccccccccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCC
Q 009708 385 -----VNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGG 459 (528)
Q Consensus 385 -----~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG 459 (528)
+.+.|+|.+.|+.+......+.||+|+|- . ++ +.--...|.++++...+.|+|||
T Consensus 197 ~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cR----N--vl--------------iyF~~~~~~~vl~~l~~~L~pgG 256 (287)
T PRK10611 197 RVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCR----N--VM--------------IYFDKTTQERILRRFVPLLKPDG 256 (287)
T ss_pred EEChHHHccCEEEcccCCCCCCccCCCcceeeHh----h--HH--------------hcCCHHHHHHHHHHHHHHhCCCc
Confidence 22457777888776322224689999961 1 00 00012356778999999999999
Q ss_pred EEEEEc
Q 009708 460 VLVYST 465 (528)
Q Consensus 460 ~LvysT 465 (528)
+|+...
T Consensus 257 ~L~lG~ 262 (287)
T PRK10611 257 LLFAGH 262 (287)
T ss_pred EEEEeC
Confidence 998654
No 251
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=97.59 E-value=7e-05 Score=70.10 Aligned_cols=70 Identities=27% Similarity=0.260 Sum_probs=60.4
Q ss_pred CCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEE
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 412 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~ 412 (528)
.|.+|||+|+|+|..++..+.. +...|++.|+.|.....++-|++.+|+. |.+.+.|... . +..||+||+
T Consensus 79 rgkrVLd~gagsgLvaIAaa~a--GA~~v~a~d~~P~~~~ai~lNa~angv~--i~~~~~d~~g-~---~~~~Dl~La 148 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARA--GAAEVVAADIDPWLEQAIRLNAAANGVS--ILFTHADLIG-S---PPAFDLLLA 148 (218)
T ss_pred ccceeeecccccChHHHHHHHh--hhHHHHhcCCChHHHHHhhcchhhccce--eEEeeccccC-C---CcceeEEEe
Confidence 3889999999999999888764 5678999999999999999999999976 7888888866 2 357999986
No 252
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=97.57 E-value=0.00011 Score=79.06 Aligned_cols=108 Identities=25% Similarity=0.319 Sum_probs=73.9
Q ss_pred CCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccc----cccc---CCC
Q 009708 333 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT----FADN---STV 405 (528)
Q Consensus 333 ~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~----~~~~---~~~ 405 (528)
++++..||||||+||++...+++.|+.++-|+|||+-|-.. +++ +..++.|++. +... ...
T Consensus 42 l~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pikp-----------~~~-c~t~v~dIttd~cr~~l~k~l~t~ 109 (780)
T KOG1098|consen 42 LEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIKP-----------IPN-CDTLVEDITTDECRSKLRKILKTW 109 (780)
T ss_pred ccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeeccc-----------CCc-cchhhhhhhHHHHHHHHHHHHHhC
Confidence 45788999999999999999999999888999999976442 343 3334445432 1110 124
Q ss_pred CCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEE
Q 009708 406 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463 (528)
Q Consensus 406 ~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvy 463 (528)
+.|+||.|...+-.|. |. .+...-+.+-..-|+-|..+|..||.+|-
T Consensus 110 ~advVLhDgapnVg~~--------w~---~DA~~q~~L~l~al~LA~~~l~~~g~fvt 156 (780)
T KOG1098|consen 110 KADVVLHDGAPNVGGN--------WV---QDAFQQACLTLRALKLATEFLAKGGTFVT 156 (780)
T ss_pred CCcEEeecCCCccchh--------HH---HHHHHhhHHHHHHHHHHHHHHHhcCcccc
Confidence 6799999954432232 22 34444455556678889999999999873
No 253
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=97.57 E-value=0.00089 Score=68.76 Aligned_cols=112 Identities=13% Similarity=0.091 Sum_probs=75.8
Q ss_pred CCCCeEEEeCCccchHHHHHHHHcCC---CcEEEEEcCChHHHHHHHHHHHHcCCCc-cEEEEcCccccccccC-----C
Q 009708 334 QPGQSIVDCCAAPGGKTLYMASCLSG---QGLVYAIDINKGRLRILNETAKLHQVNS-VIRTIHADLRTFADNS-----T 404 (528)
Q Consensus 334 ~~g~~VLDl~aG~G~kt~~la~~~~~---~~~v~avD~s~~~l~~~~~n~~~~g~~~-~i~~~~~D~~~~~~~~-----~ 404 (528)
.++..++|+|||.|.|+..+.+.+.. ..+.+++|+|...++.+.+++....+++ .+.-+++|..+..... .
T Consensus 75 ~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~ 154 (319)
T TIGR03439 75 PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENR 154 (319)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhccccccc
Confidence 35678999999999999988877643 3468999999999999999988444443 2344888886642211 1
Q ss_pred CCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhc-cCcCCCEEEEE
Q 009708 405 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASL-LVKPGGVLVYS 464 (528)
Q Consensus 405 ~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~-~LkpGG~Lvys 464 (528)
....+|+. |-|..|- .++... ..+|+...+ .|+|||.|++.
T Consensus 155 ~~~r~~~f--lGSsiGN----------f~~~ea-------~~fL~~~~~~~l~~~d~lLiG 196 (319)
T TIGR03439 155 SRPTTILW--LGSSIGN----------FSRPEA-------AAFLAGFLATALSPSDSFLIG 196 (319)
T ss_pred CCccEEEE--eCccccC----------CCHHHH-------HHHHHHHHHhhCCCCCEEEEe
Confidence 23455553 2333333 222222 345888888 99999999864
No 254
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=97.51 E-value=7.4e-05 Score=75.84 Aligned_cols=89 Identities=26% Similarity=0.412 Sum_probs=64.1
Q ss_pred HHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc----
Q 009708 327 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---- 402 (528)
Q Consensus 327 ~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---- 402 (528)
+.+.|.++++..++|+--|.||-|..+++.+++ ++|+|+|.++.+++.++++++.. .+++.++++++.++...
T Consensus 12 vl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~-~~li~~DrD~~a~~~a~~~l~~~--~~r~~~~~~~F~~l~~~l~~~ 88 (310)
T PF01795_consen 12 VLEALNPKPGGIYVDCTFGGGGHSKAILEKLPN-GRLIGIDRDPEALERAKERLKKF--DDRFIFIHGNFSNLDEYLKEL 88 (310)
T ss_dssp HHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT--EEEEEES-HHHHHHHHCCTCCC--CTTEEEEES-GGGHHHHHHHT
T ss_pred HHHhhCcCCCceEEeecCCcHHHHHHHHHhCCC-CeEEEecCCHHHHHHHHHHHhhc--cceEEEEeccHHHHHHHHHHc
Confidence 456677889999999999999999999998776 99999999999999998877654 45799999998876432
Q ss_pred -CCCCCCEEEEcCCCCC
Q 009708 403 -STVKCDKVLLDAPCSG 418 (528)
Q Consensus 403 -~~~~fD~Vl~D~Pcsg 418 (528)
...++|.||+|.=+|+
T Consensus 89 ~~~~~~dgiL~DLGvSS 105 (310)
T PF01795_consen 89 NGINKVDGILFDLGVSS 105 (310)
T ss_dssp TTTS-EEEEEEE-S--H
T ss_pred cCCCccCEEEEccccCH
Confidence 1357999999976654
No 255
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.49 E-value=0.00033 Score=62.98 Aligned_cols=59 Identities=25% Similarity=0.389 Sum_probs=51.5
Q ss_pred eEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccc
Q 009708 338 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT 398 (528)
Q Consensus 338 ~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~ 398 (528)
+|||+|||.|..+..++.. .+.++|+++|.++..++.+++|++.+++++ +++++..+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~-~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~-v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARK-GAEGRVIAFEPLPDAYEILEENVKLNNLPN-VVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHh-CCCCEEEEEecCHHHHHHHHHHHHHcCCCc-EEEEEeeeeC
Confidence 4899999999999999886 445699999999999999999999999876 8888876654
No 256
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=97.47 E-value=0.0027 Score=60.55 Aligned_cols=127 Identities=15% Similarity=0.193 Sum_probs=70.0
Q ss_pred chHHHHHHhcCCCC---CCeEEEeCCccchHHHHHHHHcCC-CcEEEEEcCChHHHHHHHHHHHHcCCC-----------
Q 009708 322 ESAGLVVAVVDPQP---GQSIVDCCAAPGGKTLYMASCLSG-QGLVYAIDINKGRLRILNETAKLHQVN----------- 386 (528)
Q Consensus 322 ~~s~l~~~~l~~~~---g~~VLDl~aG~G~kt~~la~~~~~-~~~v~avD~s~~~l~~~~~n~~~~g~~----------- 386 (528)
.++.+....+...+ +-++.|.|||.|...+.+.-+-.+ -..|+|-|+++..++.+++|+..+...
T Consensus 35 LAsEi~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~ 114 (246)
T PF11599_consen 35 LASEIFQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRE 114 (246)
T ss_dssp HHHHHHHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHH
Confidence 34444444444332 337999999999988877654221 237999999999999999887532111
Q ss_pred ------------------------------ccEEEEcCccccccc----cCCCCCCEEEEcCCCCCCccccCCchhhccC
Q 009708 387 ------------------------------SVIRTIHADLRTFAD----NSTVKCDKVLLDAPCSGLGVLSKRADLRWNR 432 (528)
Q Consensus 387 ------------------------------~~i~~~~~D~~~~~~----~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~ 432 (528)
--..+.++|+++... ......|+|+.|.|+...- .|.-
T Consensus 115 ~~e~~~kps~~eAl~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t--------~W~g 186 (246)
T PF11599_consen 115 LYEQYGKPSHAEALESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMT--------SWQG 186 (246)
T ss_dssp HHHHH--HHHHHHHHHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSS--------STTS
T ss_pred HHHHcCCchHHHHHHHHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccc--------cccC
Confidence 014566777776322 1133479999999994322 3532
Q ss_pred --CHHHHHHHHHHHHHHHHHHhccCcCCCEEEE
Q 009708 433 --RLEDMEELKILQDELLDAASLLVKPGGVLVY 463 (528)
Q Consensus 433 --~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvy 463 (528)
+..-+ .++|+.....|-++++++.
T Consensus 187 ~~~~~p~-------~~ml~~l~~vLp~~sVV~v 212 (246)
T PF11599_consen 187 EGSGGPV-------AQMLNSLAPVLPERSVVAV 212 (246)
T ss_dssp ---HHHH-------HHHHHHHHCCS-TT-EEEE
T ss_pred CCCCCcH-------HHHHHHHHhhCCCCcEEEE
Confidence 22222 3469999999954555554
No 257
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=97.39 E-value=0.0004 Score=66.70 Aligned_cols=104 Identities=22% Similarity=0.191 Sum_probs=69.2
Q ss_pred CCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEcCC
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAP 415 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~P 415 (528)
-.+.||+|||-|..|-.+... --.+|-.||..+..++.|++.+...+ ....++++.-+.++.+. ..+||+|.+- -
T Consensus 56 ~~~alDcGAGIGRVTk~lLl~--~f~~VDlVEp~~~Fl~~a~~~l~~~~-~~v~~~~~~gLQ~f~P~-~~~YDlIW~Q-W 130 (218)
T PF05891_consen 56 FNRALDCGAGIGRVTKGLLLP--VFDEVDLVEPVEKFLEQAKEYLGKDN-PRVGEFYCVGLQDFTPE-EGKYDLIWIQ-W 130 (218)
T ss_dssp -SEEEEET-TTTHHHHHTCCC--C-SEEEEEES-HHHHHHHHHHTCCGG-CCEEEEEES-GGG-----TT-EEEEEEE-S
T ss_pred cceEEecccccchhHHHHHHH--hcCEeEEeccCHHHHHHHHHHhcccC-CCcceEEecCHhhccCC-CCcEeEEEeh-H
Confidence 458999999999999877543 34689999999999999987654421 23457788878777654 3689999973 2
Q ss_pred CCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEE
Q 009708 416 CSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463 (528)
Q Consensus 416 csg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvy 463 (528)
|. | ..+.+++-. +|+.+...|+|||.||.
T Consensus 131 ~l--g----------hLTD~dlv~-------fL~RCk~~L~~~G~Ivv 159 (218)
T PF05891_consen 131 CL--G----------HLTDEDLVA-------FLKRCKQALKPNGVIVV 159 (218)
T ss_dssp -G--G----------GS-HHHHHH-------HHHHHHHHEEEEEEEEE
T ss_pred hh--c----------cCCHHHHHH-------HHHHHHHhCcCCcEEEE
Confidence 21 1 245556544 59999999999999884
No 258
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.36 E-value=0.0025 Score=61.15 Aligned_cols=124 Identities=17% Similarity=0.232 Sum_probs=96.7
Q ss_pred CCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEcC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDA 414 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~ 414 (528)
.+.++.|+||--|..++++.+. +....+++.|+++.-++.+.+|++++++..++++..+|....... ...+|.|++
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~-~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~-~d~~d~ivI-- 91 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKN-NPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLEL-EDEIDVIVI-- 91 (226)
T ss_pred cCCceeeccCchhHhHHHHHhc-CCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCc-cCCcCEEEE--
Confidence 4566999999999999999886 456789999999999999999999999999999999999664432 347899887
Q ss_pred CCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchhhHHHHHHHHhhCCCceEe
Q 009708 415 PCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSID 490 (528)
Q Consensus 415 Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~Ene~~v~~~l~~~~~~~~~ 490 (528)
.|.|- . +-.++|++....|+.--++| +.|..+...+..||..+. |++.
T Consensus 92 --AGMGG-------------~-------lI~~ILee~~~~l~~~~rlI-----LQPn~~~~~LR~~L~~~~-~~I~ 139 (226)
T COG2384 92 --AGMGG-------------T-------LIREILEEGKEKLKGVERLI-----LQPNIHTYELREWLSANS-YEIK 139 (226)
T ss_pred --eCCcH-------------H-------HHHHHHHHhhhhhcCcceEE-----ECCCCCHHHHHHHHHhCC-ceee
Confidence 45554 1 22456888888888545666 457777778889998873 4443
No 259
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.36 E-value=0.0019 Score=58.30 Aligned_cols=81 Identities=19% Similarity=0.152 Sum_probs=61.2
Q ss_pred CCCCeEEEeCCccchHHHHHHHHc---CCCcEEEEEcCChHHHHHHHHHHHHcC--CCccEEEEcCccccccccCCCCCC
Q 009708 334 QPGQSIVDCCAAPGGKTLYMASCL---SGQGLVYAIDINKGRLRILNETAKLHQ--VNSVIRTIHADLRTFADNSTVKCD 408 (528)
Q Consensus 334 ~~g~~VLDl~aG~G~kt~~la~~~---~~~~~v~avD~s~~~l~~~~~n~~~~g--~~~~i~~~~~D~~~~~~~~~~~fD 408 (528)
.+...|+|+|||-|..+..++..+ ....+|+++|.++..++.+.+..+..+ ....+.+..++...... ....+
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 101 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESS--SDPPD 101 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcc--cCCCe
Confidence 567799999999999999999843 245799999999999999999999988 53446666655543322 24566
Q ss_pred EEEEcCCC
Q 009708 409 KVLLDAPC 416 (528)
Q Consensus 409 ~Vl~D~Pc 416 (528)
.++.=-.|
T Consensus 102 ~~vgLHaC 109 (141)
T PF13679_consen 102 ILVGLHAC 109 (141)
T ss_pred EEEEeecc
Confidence 77665666
No 260
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=97.34 E-value=0.00051 Score=66.98 Aligned_cols=90 Identities=22% Similarity=0.263 Sum_probs=60.2
Q ss_pred HHHHHHhcCCCCCC--eEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCC--C------ccEEEEc
Q 009708 324 AGLVVAVVDPQPGQ--SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQV--N------SVIRTIH 393 (528)
Q Consensus 324 s~l~~~~l~~~~g~--~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~--~------~~i~~~~ 393 (528)
...++.++++++|. +|||+-||-|.-++.+|.. +++|+++|.||-....++.-+++..- + .+|++++
T Consensus 62 ~~~l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~---G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~ 138 (234)
T PF04445_consen 62 GDPLAKAVGLKPGMRPSVLDATAGLGRDAFVLASL---GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIH 138 (234)
T ss_dssp GSHHHHHTT-BTTB---EEETT-TTSHHHHHHHHH---T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEE
T ss_pred ccHHHHHhCCCCCCCCEEEECCCcchHHHHHHHcc---CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEc
Confidence 34566677777764 8999999999999999875 46899999999998888766555321 1 3699999
Q ss_pred CccccccccCCCCCCEEEEcCCC
Q 009708 394 ADLRTFADNSTVKCDKVLLDAPC 416 (528)
Q Consensus 394 ~D~~~~~~~~~~~fD~Vl~D~Pc 416 (528)
+|..++......+||+|.+||-.
T Consensus 139 ~d~~~~L~~~~~s~DVVY~DPMF 161 (234)
T PF04445_consen 139 GDALEYLRQPDNSFDVVYFDPMF 161 (234)
T ss_dssp S-CCCHCCCHSS--SEEEE--S-
T ss_pred CCHHHHHhhcCCCCCEEEECCCC
Confidence 99999876446789999999987
No 261
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=97.29 E-value=0.00032 Score=67.07 Aligned_cols=109 Identities=18% Similarity=0.190 Sum_probs=63.4
Q ss_pred CeEEEeCCccchHHHHHH----HHcC---C-CcEEEEEcCChHHHHHHHHH--------------HHHc-----C-----
Q 009708 337 QSIVDCCAAPGGKTLYMA----SCLS---G-QGLVYAIDINKGRLRILNET--------------AKLH-----Q----- 384 (528)
Q Consensus 337 ~~VLDl~aG~G~kt~~la----~~~~---~-~~~v~avD~s~~~l~~~~~n--------------~~~~-----g----- 384 (528)
-+|+.+||++|-=+-.+| +... + .-+|+|.|+|+..++.|++- .+++ |
T Consensus 33 lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~~v 112 (196)
T PF01739_consen 33 LRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGYRV 112 (196)
T ss_dssp EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCTTE
T ss_pred eEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCceeE
Confidence 489999999997443332 3111 1 34899999999999998762 1111 1
Q ss_pred ---CCccEEEEcCccccccccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEE
Q 009708 385 ---VNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVL 461 (528)
Q Consensus 385 ---~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~L 461 (528)
+.+.|+|.+.|+.+ .....+.||+|+| -..-+ .. -.+.|.++++.....|+|||+|
T Consensus 113 ~~~lr~~V~F~~~NL~~-~~~~~~~fD~I~C----RNVlI---------YF-------~~~~~~~vl~~l~~~L~pgG~L 171 (196)
T PF01739_consen 113 KPELRKMVRFRRHNLLD-PDPPFGRFDLIFC----RNVLI---------YF-------DPETQQRVLRRLHRSLKPGGYL 171 (196)
T ss_dssp -HHHHTTEEEEE--TT--S------EEEEEE-----SSGG---------GS--------HHHHHHHHHHHGGGEEEEEEE
T ss_pred ChHHcCceEEEecccCC-CCcccCCccEEEe----cCEEE---------Ee-------CHHHHHHHHHHHHHHcCCCCEE
Confidence 01357888888887 2223478999996 21100 11 1245677899999999999999
Q ss_pred EEEcC
Q 009708 462 VYSTC 466 (528)
Q Consensus 462 vysTc 466 (528)
+....
T Consensus 172 ~lG~s 176 (196)
T PF01739_consen 172 FLGHS 176 (196)
T ss_dssp EE-TT
T ss_pred EEecC
Confidence 97543
No 262
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.26 E-value=0.00048 Score=66.70 Aligned_cols=96 Identities=30% Similarity=0.413 Sum_probs=65.4
Q ss_pred CCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccC-CCCCCEEEEc
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS-TVKCDKVLLD 413 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~-~~~fD~Vl~D 413 (528)
+|..+||+||.+||+|-.+.+. +..+|+|+|..-..+..--++ . +..+..-..+++.+.+.. .+..|.|++|
T Consensus 79 k~kv~LDiGsSTGGFTd~lLq~--gAk~VyavDVG~~Ql~~kLR~----d-~rV~~~E~tN~r~l~~~~~~~~~d~~v~D 151 (245)
T COG1189 79 KGKVVLDIGSSTGGFTDVLLQR--GAKHVYAVDVGYGQLHWKLRN----D-PRVIVLERTNVRYLTPEDFTEKPDLIVID 151 (245)
T ss_pred CCCEEEEecCCCccHHHHHHHc--CCcEEEEEEccCCccCHhHhc----C-CcEEEEecCChhhCCHHHcccCCCeEEEE
Confidence 5789999999999999999885 577999999987655432111 1 122334455666554432 4578999999
Q ss_pred CCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEE
Q 009708 414 APCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLV 462 (528)
Q Consensus 414 ~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lv 462 (528)
....+. ..+|..+..+++++|.++
T Consensus 152 vSFISL-------------------------~~iLp~l~~l~~~~~~~v 175 (245)
T COG1189 152 VSFISL-------------------------KLILPALLLLLKDGGDLV 175 (245)
T ss_pred eehhhH-------------------------HHHHHHHHHhcCCCceEE
Confidence 887321 224777777777777666
No 263
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=97.18 E-value=0.00018 Score=71.36 Aligned_cols=75 Identities=28% Similarity=0.353 Sum_probs=62.9
Q ss_pred CCCeEEEeCCccchHHH-HHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEc
Q 009708 335 PGQSIVDCCAAPGGKTL-YMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLD 413 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~-~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D 413 (528)
.|+.|.||.||-|.+|+ .+... +...|+|+|.+|..++.+++|++.+++..+..++.+|.+...+ ....|.|.+-
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~a--gAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~--~~~AdrVnLG 269 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTA--GAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKP--RLRADRVNLG 269 (351)
T ss_pred ccchhhhhhcccceEEeehhhcc--CccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccCc--cccchheeec
Confidence 46899999999999998 55543 5678999999999999999999999998877888888877543 3578888765
No 264
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=97.17 E-value=0.0013 Score=62.04 Aligned_cols=136 Identities=18% Similarity=0.251 Sum_probs=86.5
Q ss_pred CeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcC-------CCccEEEEcCccccccccC--CCCC
Q 009708 337 QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQ-------VNSVIRTIHADLRTFADNS--TVKC 407 (528)
Q Consensus 337 ~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g-------~~~~i~~~~~D~~~~~~~~--~~~f 407 (528)
-.+.|+|||-||..+.++... ++.-|+|.||--...+..++++..++ +.| +.+...++..+.+.. .+..
T Consensus 62 vefaDIGCGyGGLlv~Lsp~f-PdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~n-i~vlr~namk~lpn~f~kgqL 139 (249)
T KOG3115|consen 62 VEFADIGCGYGGLLMKLAPKF-PDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPN-ISVLRTNAMKFLPNFFEKGQL 139 (249)
T ss_pred ceEEeeccCccchhhhccccC-ccceeeeehhhHHHHHHHHHHHHHHhcccccccccc-ceeeeccchhhccchhhhccc
Confidence 368999999999999999875 46789999998888888888877766 454 677777777766543 1222
Q ss_pred CEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchhhHHHHHHHHhhCCCc
Q 009708 408 DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEF 487 (528)
Q Consensus 408 D~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~Ene~~v~~~l~~~~~~ 487 (528)
+.++. | -.+|..+-++. ...-.+..++....-+|++||.++++|-. .|--+-....+.+||-|
T Consensus 140 skmff---~------fpdpHfk~~kh-----k~rii~~~l~~eyay~l~~gg~~ytitDv---~elh~wm~~~~e~hplf 202 (249)
T KOG3115|consen 140 SKMFF---L------FPDPHFKARKH-----KWRIITSTLLSEYAYVLREGGILYTITDV---KELHEWMVKHLEEHPLF 202 (249)
T ss_pred cccee---e------cCChhHhhhhc-----cceeechhHHHHHHhhhhcCceEEEEeeH---HHHHHHHHHHHHhCcHh
Confidence 33322 1 11221111111 11113345688888999999999977632 22222233567778877
Q ss_pred eEec
Q 009708 488 SIDP 491 (528)
Q Consensus 488 ~~~~ 491 (528)
+...
T Consensus 203 e~lt 206 (249)
T KOG3115|consen 203 ERLT 206 (249)
T ss_pred hhcc
Confidence 6543
No 265
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=97.12 E-value=0.0013 Score=65.72 Aligned_cols=107 Identities=17% Similarity=0.147 Sum_probs=69.2
Q ss_pred CeEEEeCCccch----HHHHHHHHcCC----CcEEEEEcCChHHHHHHHHHHHH-----cCCC-----------------
Q 009708 337 QSIVDCCAAPGG----KTLYMASCLSG----QGLVYAIDINKGRLRILNETAKL-----HQVN----------------- 386 (528)
Q Consensus 337 ~~VLDl~aG~G~----kt~~la~~~~~----~~~v~avD~s~~~l~~~~~n~~~-----~g~~----------------- 386 (528)
-+|+-+||++|- .++.+.+.++. ..+|+|.|+|...|+.|+.-.-. -+++
T Consensus 98 irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y~ 177 (268)
T COG1352 98 IRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSYR 177 (268)
T ss_pred eEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcEE
Confidence 489999999996 34444454432 46899999999999988752111 1111
Q ss_pred ------ccEEEEcCccccccccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCE
Q 009708 387 ------SVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGV 460 (528)
Q Consensus 387 ------~~i~~~~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~ 460 (528)
..|.|-..|+..-.. ..+.||+|+|= +-- +.=-...|.++++.-+..|+|||.
T Consensus 178 v~~~ir~~V~F~~~NLl~~~~-~~~~fD~IfCR-----------NVL---------IYFd~~~q~~il~~f~~~L~~gG~ 236 (268)
T COG1352 178 VKEELRKMVRFRRHNLLDDSP-FLGKFDLIFCR-----------NVL---------IYFDEETQERILRRFADSLKPGGL 236 (268)
T ss_pred EChHHhcccEEeecCCCCCcc-ccCCCCEEEEc-----------ceE---------EeeCHHHHHHHHHHHHHHhCCCCE
Confidence 124455555544332 34679999961 100 011134688899999999999999
Q ss_pred EEEE
Q 009708 461 LVYS 464 (528)
Q Consensus 461 Lvys 464 (528)
|+.-
T Consensus 237 LflG 240 (268)
T COG1352 237 LFLG 240 (268)
T ss_pred EEEc
Confidence 9954
No 266
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.06 E-value=0.0057 Score=61.32 Aligned_cols=107 Identities=21% Similarity=0.194 Sum_probs=65.8
Q ss_pred CeEEEeCCccchHHHH-HHHHcCCCcEEEEEcCChHHHHHHHHHHH-HcCCCccEEEEcCccccccccCCCCCCEEEEcC
Q 009708 337 QSIVDCCAAPGGKTLY-MASCLSGQGLVYAIDINKGRLRILNETAK-LHQVNSVIRTIHADLRTFADNSTVKCDKVLLDA 414 (528)
Q Consensus 337 ~~VLDl~aG~G~kt~~-la~~~~~~~~v~avD~s~~~l~~~~~n~~-~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~ 414 (528)
.+|+=+||||=-.|.. +++....+..|+++|+++.+++.+++-++ ..|+..+++++++|....... -..||+|++-+
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~d-l~~~DvV~lAa 200 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYD-LKEYDVVFLAA 200 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG-----SEEEE-T
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccc-cccCCEEEEhh
Confidence 4999999999777754 44433345689999999999999999888 677888899999999876533 25799999843
Q ss_pred CCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEc
Q 009708 415 PCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465 (528)
Q Consensus 415 Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysT 465 (528)
-- |+ +.+ --.++|++..+.++||..|+|-+
T Consensus 201 lV---g~-----------~~e-------~K~~Il~~l~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 201 LV---GM-----------DAE-------PKEEILEHLAKHMAPGARLVVRS 230 (276)
T ss_dssp T----S----------------------SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred hc---cc-----------ccc-------hHHHHHHHHHhhCCCCcEEEEec
Confidence 33 11 001 12357999999999999999764
No 267
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=96.89 E-value=0.0017 Score=66.48 Aligned_cols=77 Identities=19% Similarity=0.405 Sum_probs=56.6
Q ss_pred eEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccC-CCCCCEEEEcCCC
Q 009708 338 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS-TVKCDKVLLDAPC 416 (528)
Q Consensus 338 ~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~-~~~fD~Vl~D~Pc 416 (528)
+|+|+|||.||.++-+-+. +-..+.|+|+++.+.+..+.|.. ....+|+..+.... +..+|+++.-|||
T Consensus 2 ~~~dlFsG~Gg~~~g~~~a--g~~~~~a~e~~~~a~~~y~~N~~--------~~~~~Di~~~~~~~l~~~~D~l~ggpPC 71 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQA--GFEVVWAVEIDPDACETYKANFP--------EVICGDITEIDPSDLPKDVDLLIGGPPC 71 (335)
T ss_dssp EEEEET-TTTHHHHHHHHT--TEEEEEEEESSHHHHHHHHHHHT--------EEEESHGGGCHHHHHHHT-SEEEEE---
T ss_pred cEEEEccCccHHHHHHHhc--CcEEEEEeecCHHHHHhhhhccc--------ccccccccccccccccccceEEEeccCC
Confidence 6999999999999888764 23368999999999999999875 45778888765432 1159999999999
Q ss_pred CCCccccC
Q 009708 417 SGLGVLSK 424 (528)
Q Consensus 417 sg~G~~~~ 424 (528)
.+....++
T Consensus 72 Q~fS~ag~ 79 (335)
T PF00145_consen 72 QGFSIAGK 79 (335)
T ss_dssp TTTSTTST
T ss_pred ceEecccc
Confidence 88877664
No 268
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=96.83 E-value=0.013 Score=50.82 Aligned_cols=108 Identities=19% Similarity=0.119 Sum_probs=67.7
Q ss_pred EEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccc-cccCC-CCCCEEEEcCCC
Q 009708 339 IVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF-ADNST-VKCDKVLLDAPC 416 (528)
Q Consensus 339 VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~-~~~~~-~~fD~Vl~D~Pc 416 (528)
++|+|||+|..+ .++........++++|+++.++...+......+... +.+...|.... .+... ..||.+......
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 129 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGL-VDFVVADALGGVLPFEDSASFDLVISLLVL 129 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCc-eEEEEeccccCCCCCCCCCceeEEeeeeeh
Confidence 999999999977 444442222389999999999988554443322211 56677776652 22212 368888332222
Q ss_pred CCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCch
Q 009708 417 SGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPE 471 (528)
Q Consensus 417 sg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~ 471 (528)
. +. . ....+..+.+.++|+|.+++........
T Consensus 130 ~------------~~-~----------~~~~~~~~~~~l~~~g~~~~~~~~~~~~ 161 (257)
T COG0500 130 H------------LL-P----------PAKALRELLRVLKPGGRLVLSDLLRDGL 161 (257)
T ss_pred h------------cC-C----------HHHHHHHHHHhcCCCcEEEEEeccCCCC
Confidence 0 00 0 2345888899999999999887765443
No 269
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=96.73 E-value=0.03 Score=52.11 Aligned_cols=137 Identities=16% Similarity=0.137 Sum_probs=86.9
Q ss_pred ccchHHHHHHHHcCCCcEEEE--EcCChHHHHH---HHHHHHHcCCCccEEEEcCccccccccC---CCCCCEEEEcCCC
Q 009708 345 APGGKTLYMASCLSGQGLVYA--IDINKGRLRI---LNETAKLHQVNSVIRTIHADLRTFADNS---TVKCDKVLLDAPC 416 (528)
Q Consensus 345 G~G~kt~~la~~~~~~~~v~a--vD~s~~~l~~---~~~n~~~~g~~~~i~~~~~D~~~~~~~~---~~~fD~Vl~D~Pc 416 (528)
|--.++..++...+....|+| .|-.....+. +..|++.+.-.+.......|++.+.... ..+||+|+-+=|+
T Consensus 6 GdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiFNFPH 85 (166)
T PF10354_consen 6 GDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIFNFPH 85 (166)
T ss_pred cchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEEeCCC
Confidence 344566677776553445555 4544444332 3356665533332334566888876544 5789999999999
Q ss_pred CCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchhhHHHHHHHHhhCCCceEecC
Q 009708 417 SGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPA 492 (528)
Q Consensus 417 sg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~Ene~~v~~~l~~~~~~~~~~~ 492 (528)
.|.|.-. ....+.....+-..++..|..+|+++|.+..+-|.-.|-...++ . .+.++.++.+...
T Consensus 86 ~G~~~~~---------~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~py~~W~i-~-~lA~~~gl~l~~~ 150 (166)
T PF10354_consen 86 VGGGSED---------GKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQPYDSWNI-E-ELAAEAGLVLVRK 150 (166)
T ss_pred CCCCccc---------hhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCCccccH-H-HHHHhcCCEEEEE
Confidence 8744311 22455556667788999999999999999998888777533333 3 3445566766554
No 270
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=96.64 E-value=0.016 Score=55.28 Aligned_cols=106 Identities=13% Similarity=0.164 Sum_probs=72.3
Q ss_pred CCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccC-CCCCCEEEE
Q 009708 334 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS-TVKCDKVLL 412 (528)
Q Consensus 334 ~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~-~~~fD~Vl~ 412 (528)
..|.+||.+|-|-|.....+-+. ++ .+-+-+|.+|..++.++.+.=+- +.+|.++.+--.+..+.. .+.||-|+-
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~-~p-~~H~IiE~hp~V~krmr~~gw~e--k~nViil~g~WeDvl~~L~d~~FDGI~y 175 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEA-PP-DEHWIIEAHPDVLKRMRDWGWRE--KENVIILEGRWEDVLNTLPDKHFDGIYY 175 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhc-CC-cceEEEecCHHHHHHHHhccccc--ccceEEEecchHhhhccccccCcceeEe
Confidence 56889999999999998887664 43 45677899999998887764332 233666665444333222 456999998
Q ss_pred cCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEc
Q 009708 413 DAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465 (528)
Q Consensus 413 D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysT 465 (528)
|.-. ++.+....+-+++.++|||+|.+-|..
T Consensus 176 DTy~----------------------e~yEdl~~~hqh~~rLLkP~gv~SyfN 206 (271)
T KOG1709|consen 176 DTYS----------------------ELYEDLRHFHQHVVRLLKPEGVFSYFN 206 (271)
T ss_pred echh----------------------hHHHHHHHHHHHHhhhcCCCceEEEec
Confidence 7432 122222445679999999999887743
No 271
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.53 E-value=0.013 Score=59.34 Aligned_cols=121 Identities=21% Similarity=0.251 Sum_probs=78.5
Q ss_pred cccceeEeecchH-HHHHHhcCCCCCCeEEEeCCccch-HHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccE
Q 009708 312 LKEGLCAVQDESA-GLVVAVVDPQPGQSIVDCCAAPGG-KTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVI 389 (528)
Q Consensus 312 ~~~G~~~~Qd~~s-~l~~~~l~~~~g~~VLDl~aG~G~-kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i 389 (528)
|.+|.+ +|..+. ..+.....+++|++||=+||||=| .|...|+.+ +..+|+.+|+++.|++.|++ .|.+. +
T Consensus 146 ~eeGAl-~ePLsV~~HAcr~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~-GA~~VVi~d~~~~Rle~Ak~----~Ga~~-~ 218 (354)
T KOG0024|consen 146 FEEGAL-IEPLSVGVHACRRAGVKKGSKVLVLGAGPIGLLTGLVAKAM-GASDVVITDLVANRLELAKK----FGATV-T 218 (354)
T ss_pred hhhccc-ccchhhhhhhhhhcCcccCCeEEEECCcHHHHHHHHHHHHc-CCCcEEEeecCHHHHHHHHH----hCCeE-E
Confidence 445544 334442 233445568899999999999955 555556655 47899999999999998876 67764 2
Q ss_pred EEEcC-c----ccccccc-C-CCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEE
Q 009708 390 RTIHA-D----LRTFADN-S-TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLV 462 (528)
Q Consensus 390 ~~~~~-D----~~~~~~~-~-~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lv 462 (528)
..... + ....... . ...||..+- |||... -++.|...++.||+++
T Consensus 219 ~~~~~~~~~~~~~~~v~~~~g~~~~d~~~d---CsG~~~-------------------------~~~aai~a~r~gGt~v 270 (354)
T KOG0024|consen 219 DPSSHKSSPQELAELVEKALGKKQPDVTFD---CSGAEV-------------------------TIRAAIKATRSGGTVV 270 (354)
T ss_pred eeccccccHHHHHHHHHhhccccCCCeEEE---ccCchH-------------------------HHHHHHHHhccCCEEE
Confidence 22221 1 1111111 1 245888875 877444 3777889999999988
Q ss_pred EEcCC
Q 009708 463 YSTCS 467 (528)
Q Consensus 463 ysTcs 467 (528)
..-|-
T Consensus 271 lvg~g 275 (354)
T KOG0024|consen 271 LVGMG 275 (354)
T ss_pred EeccC
Confidence 77654
No 272
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=96.49 E-value=0.005 Score=58.80 Aligned_cols=110 Identities=17% Similarity=0.216 Sum_probs=59.1
Q ss_pred CCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEcC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDA 414 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~ 414 (528)
++-.|-|+|||-+..+.. +++.-+|...|.... ... ++.+|+.+.+-. .+.+|+++.-.
T Consensus 72 ~~~viaD~GCGdA~la~~----~~~~~~V~SfDLva~--------------n~~--Vtacdia~vPL~-~~svDv~VfcL 130 (219)
T PF05148_consen 72 KSLVIADFGCGDAKLAKA----VPNKHKVHSFDLVAP--------------NPR--VTACDIANVPLE-DESVDVAVFCL 130 (219)
T ss_dssp TTS-EEEES-TT-HHHHH------S---EEEEESS-S--------------STT--EEES-TTS-S---TT-EEEEEEES
T ss_pred CCEEEEECCCchHHHHHh----cccCceEEEeeccCC--------------CCC--EEEecCccCcCC-CCceeEEEEEh
Confidence 356899999999887633 344457999998532 122 456888776643 47899988722
Q ss_pred CCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcC-CCCchhhHHHHHHHHhhCCCceEec
Q 009708 415 PCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTC-SIDPEENEERVEAFLLRHPEFSIDP 491 (528)
Q Consensus 415 Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTc-s~~~~Ene~~v~~~l~~~~~~~~~~ 491 (528)
.- .|+ + ...+|.+|.++||+||.|.++.. |-. ++.+...+.+.+. +|++..
T Consensus 131 SL--MGT--------------n-------~~~fi~EA~RvLK~~G~L~IAEV~SRf--~~~~~F~~~~~~~-GF~~~~ 182 (219)
T PF05148_consen 131 SL--MGT--------------N-------WPDFIREANRVLKPGGILKIAEVKSRF--ENVKQFIKALKKL-GFKLKS 182 (219)
T ss_dssp -----SS----------------------HHHHHHHHHHHEEEEEEEEEEEEGGG---S-HHHHHHHHHCT-TEEEEE
T ss_pred hh--hCC--------------C-------cHHHHHHHHheeccCcEEEEEEecccC--cCHHHHHHHHHHC-CCeEEe
Confidence 22 222 1 24569999999999999886643 322 2333444444433 566543
No 273
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=96.41 E-value=0.013 Score=59.21 Aligned_cols=48 Identities=13% Similarity=0.127 Sum_probs=39.6
Q ss_pred CCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHc
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLH 383 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~ 383 (528)
..+|||+|||||.-+..+.+..+.-.+++++|.|+.+++.++..++..
T Consensus 34 P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~ 81 (274)
T PF09243_consen 34 PRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAG 81 (274)
T ss_pred CceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcc
Confidence 348999999999877777666665568999999999999998877654
No 274
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=96.38 E-value=0.016 Score=57.32 Aligned_cols=98 Identities=16% Similarity=0.162 Sum_probs=72.6
Q ss_pred CCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc-CCCCCCEEEEc
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVKCDKVLLD 413 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~-~~~~fD~Vl~D 413 (528)
.|..|+=+| ---..++.+ .+.+-..+|..+||++..+...++-++..|++| ++.+..|+++..+. ..++||.++.|
T Consensus 152 ~gK~I~vvG-DDDLtsia~-aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~-ie~~~~Dlr~plpe~~~~kFDvfiTD 228 (354)
T COG1568 152 EGKEIFVVG-DDDLTSIAL-ALTGMPKRIAVVDIDERLIKFIEKVAEELGYNN-IEAFVFDLRNPLPEDLKRKFDVFITD 228 (354)
T ss_pred CCCeEEEEc-CchhhHHHH-HhcCCCceEEEEechHHHHHHHHHHHHHhCccc-hhheeehhcccChHHHHhhCCeeecC
Confidence 366788887 222333333 333435689999999999999999999999987 88999999886543 36799999999
Q ss_pred CCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCC
Q 009708 414 APCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPG 458 (528)
Q Consensus 414 ~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpG 458 (528)
||.+-.|+ +.+|......||.-
T Consensus 229 PpeTi~al-----------------------k~FlgRGI~tLkg~ 250 (354)
T COG1568 229 PPETIKAL-----------------------KLFLGRGIATLKGE 250 (354)
T ss_pred chhhHHHH-----------------------HHHHhccHHHhcCC
Confidence 99853222 44677777778865
No 275
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.34 E-value=0.0054 Score=63.17 Aligned_cols=78 Identities=22% Similarity=0.333 Sum_probs=58.1
Q ss_pred EEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEcCCCCC
Q 009708 339 IVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSG 418 (528)
Q Consensus 339 VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~Pcsg 418 (528)
|+|++||.||.+.-+-+. +--.+.++|+++.+++..+.|.. + .++++|+.++.......+|+++.-|||.+
T Consensus 1 vidLF~G~GG~~~Gl~~a--G~~~~~a~e~~~~a~~ty~~N~~-----~--~~~~~Di~~~~~~~~~~~dvl~gg~PCq~ 71 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQA--GFKCVFASEIDKYAQKTYEANFG-----N--KVPFGDITKISPSDIPDFDILLGGFPCQP 71 (315)
T ss_pred CEEEecCccHHHHHHHHc--CCeEEEEEeCCHHHHHHHHHhCC-----C--CCCccChhhhhhhhCCCcCEEEecCCCcc
Confidence 689999999999887653 22346789999999999888753 2 23567887765432346899999999988
Q ss_pred CccccCC
Q 009708 419 LGVLSKR 425 (528)
Q Consensus 419 ~G~~~~~ 425 (528)
....++.
T Consensus 72 fS~ag~~ 78 (315)
T TIGR00675 72 FSIAGKR 78 (315)
T ss_pred cchhccc
Confidence 7765543
No 276
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=96.24 E-value=0.0017 Score=67.51 Aligned_cols=66 Identities=29% Similarity=0.397 Sum_probs=59.2
Q ss_pred CCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCcc-EEEEcCccccccc
Q 009708 333 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSV-IRTIHADLRTFAD 401 (528)
Q Consensus 333 ~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~-i~~~~~D~~~~~~ 401 (528)
.++|+.|-|+|||-|-+++-++.. ..+|+|+|.+++++++++.|++.+.++.. |++++.|+..+..
T Consensus 247 fk~gevv~D~FaGvGPfa~Pa~kK---~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~Flr 313 (495)
T KOG2078|consen 247 FKPGEVVCDVFAGVGPFALPAAKK---GCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDFLR 313 (495)
T ss_pred cCCcchhhhhhcCcCccccchhhc---CcEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHHhh
Confidence 467999999999999999988874 58999999999999999999999998765 9999999988764
No 277
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=96.20 E-value=0.0094 Score=63.69 Aligned_cols=101 Identities=17% Similarity=0.171 Sum_probs=59.7
Q ss_pred eEEEeCCccchHHHHHHHHcCCCcEEEEE---cCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEcC
Q 009708 338 SIVDCCAAPGGKTLYMASCLSGQGLVYAI---DINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDA 414 (528)
Q Consensus 338 ~VLDl~aG~G~kt~~la~~~~~~~~v~av---D~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~ 414 (528)
.+||+|||.|.++.+|..+ +-.++.+ |..+..++.+-+ -|++..+.++ .+.-.+.+...||.|-|
T Consensus 120 ~~LDvGcG~aSF~a~l~~r---~V~t~s~a~~d~~~~qvqfale----RGvpa~~~~~---~s~rLPfp~~~fDmvHc-- 187 (506)
T PF03141_consen 120 TALDVGCGVASFGAYLLER---NVTTMSFAPNDEHEAQVQFALE----RGVPAMIGVL---GSQRLPFPSNAFDMVHC-- 187 (506)
T ss_pred EEEeccceeehhHHHHhhC---CceEEEcccccCCchhhhhhhh----cCcchhhhhh---ccccccCCccchhhhhc--
Confidence 6899999999999999875 2333222 344444443322 3665422211 11222334578999874
Q ss_pred CCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCC
Q 009708 415 PCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSID 469 (528)
Q Consensus 415 Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~ 469 (528)
+...+ .|.... --+|-+.-++|+|||++|+|.-.+.
T Consensus 188 --src~i-------~W~~~~----------g~~l~evdRvLRpGGyfv~S~ppv~ 223 (506)
T PF03141_consen 188 --SRCLI-------PWHPND----------GFLLFEVDRVLRPGGYFVLSGPPVY 223 (506)
T ss_pred --ccccc-------cchhcc----------cceeehhhhhhccCceEEecCCccc
Confidence 33222 232111 1147778899999999999877666
No 278
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=96.17 E-value=0.09 Score=49.58 Aligned_cols=41 Identities=22% Similarity=0.326 Sum_probs=35.7
Q ss_pred hcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCCh
Q 009708 330 VVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINK 370 (528)
Q Consensus 330 ~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~ 370 (528)
+..+++|.+|+|+--|.|.+|..++..+++.|.|+++=-.+
T Consensus 43 FaGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e 83 (238)
T COG4798 43 FAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAE 83 (238)
T ss_pred EeccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchh
Confidence 44678999999999999999999999999999999875443
No 279
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=96.13 E-value=0.01 Score=61.84 Aligned_cols=60 Identities=12% Similarity=0.099 Sum_probs=52.2
Q ss_pred eEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccc
Q 009708 338 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF 399 (528)
Q Consensus 338 ~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~ 399 (528)
.|||+|+|+|..+..++..+ .-.|+|+|.-..+.+.+++...++|.+++|++++--.++.
T Consensus 69 ~vLdigtGTGLLSmMAvrag--aD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev 128 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAG--ADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEV 128 (636)
T ss_pred EEEEccCCccHHHHHHHHhc--CCeEEeehhhchHHHHHHHHHhcCCCccceeeecccccee
Confidence 58999999999998887763 4579999999999999999999999998899887655544
No 280
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=96.04 E-value=0.017 Score=60.30 Aligned_cols=106 Identities=23% Similarity=0.316 Sum_probs=82.0
Q ss_pred cCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEE
Q 009708 331 VDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKV 410 (528)
Q Consensus 331 l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~V 410 (528)
....++..++|++||-|+....++.. ....++++|.++..+..........++++...++.+|+.+.+.. ...||.+
T Consensus 106 ~~~~~~~~~~~~~~g~~~~~~~i~~f--~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fe-dn~fd~v 182 (364)
T KOG1269|consen 106 ESCFPGSKVLDVGTGVGGPSRYIAVF--KKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFE-DNTFDGV 182 (364)
T ss_pred hcCcccccccccCcCcCchhHHHHHh--ccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCC-ccccCcE
Confidence 34567889999999999999999876 34689999999999999999888888887667788888776543 4679987
Q ss_pred E-EcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEE
Q 009708 411 L-LDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLV 462 (528)
Q Consensus 411 l-~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lv 462 (528)
- +|.-|.. | + -...+.+.++.+||||..+
T Consensus 183 ~~ld~~~~~-------~------~----------~~~~y~Ei~rv~kpGG~~i 212 (364)
T KOG1269|consen 183 RFLEVVCHA-------P------D----------LEKVYAEIYRVLKPGGLFI 212 (364)
T ss_pred EEEeecccC-------C------c----------HHHHHHHHhcccCCCceEE
Confidence 4 6666622 1 0 1234788889999999877
No 281
>PHA01634 hypothetical protein
Probab=95.95 E-value=0.035 Score=48.68 Aligned_cols=72 Identities=14% Similarity=0.168 Sum_probs=54.1
Q ss_pred CCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEc
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLD 413 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D 413 (528)
.+.+|+|+|++-|..+++.+.. +..+|+++|.++...+..++|++.+.+-+... ... .++. .-+.||...+|
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~--GAK~Vva~E~~~kl~k~~een~k~nnI~DK~v-~~~---eW~~-~Y~~~Di~~iD 99 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLR--GASFVVQYEKEEKLRKKWEEVCAYFNICDKAV-MKG---EWNG-EYEDVDIFVMD 99 (156)
T ss_pred cCCEEEEecCCccchhhHHhhc--CccEEEEeccCHHHHHHHHHHhhhheeeecee-ecc---cccc-cCCCcceEEEE
Confidence 3779999999999999999864 67899999999999999999998875432211 111 1222 23679988887
No 282
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=95.95 E-value=0.051 Score=55.76 Aligned_cols=101 Identities=14% Similarity=0.106 Sum_probs=73.8
Q ss_pred CeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEcCCC
Q 009708 337 QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPC 416 (528)
Q Consensus 337 ~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~Pc 416 (528)
...+|+|+|.|..+-.+....+ +|-+++.+...+-.+..+.. .| |+.+-+|.++-.+ +-|+|++- -|
T Consensus 179 ~~avDvGgGiG~v~k~ll~~fp---~ik~infdlp~v~~~a~~~~-~g----V~~v~gdmfq~~P----~~daI~mk-Wi 245 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSKYP---HIKGINFDLPFVLAAAPYLA-PG----VEHVAGDMFQDTP----KGDAIWMK-WI 245 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHhCC---CCceeecCHHHHHhhhhhhc-CC----cceecccccccCC----CcCeEEEE-ee
Confidence 6899999999999999988533 48888888888877766654 44 5567788876533 35788751 11
Q ss_pred CCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCC
Q 009708 417 SGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSID 469 (528)
Q Consensus 417 sg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~ 469 (528)
...++.++... ||+++++.|+|||.|+...+-..
T Consensus 246 ------------LhdwtDedcvk-------iLknC~~sL~~~GkIiv~E~V~p 279 (342)
T KOG3178|consen 246 ------------LHDWTDEDCVK-------ILKNCKKSLPPGGKIIVVENVTP 279 (342)
T ss_pred ------------cccCChHHHHH-------HHHHHHHhCCCCCEEEEEeccCC
Confidence 11356666655 49999999999999998877443
No 283
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=95.88 E-value=0.026 Score=64.06 Aligned_cols=129 Identities=16% Similarity=0.167 Sum_probs=80.9
Q ss_pred CeEEEeCCccchHHHHHHHHcC------C-----CcEEEEEcCChHHHHHHHHH--------------HHH-----cCC-
Q 009708 337 QSIVDCCAAPGGKTLYMASCLS------G-----QGLVYAIDINKGRLRILNET--------------AKL-----HQV- 385 (528)
Q Consensus 337 ~~VLDl~aG~G~kt~~la~~~~------~-----~~~v~avD~s~~~l~~~~~n--------------~~~-----~g~- 385 (528)
-+|+|+|-|+|...+...+... + .-+++++|..|-..+.+.+. .+. .|+
T Consensus 59 ~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~ 138 (662)
T PRK01747 59 FVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGCH 138 (662)
T ss_pred EEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCce
Confidence 5899999999998877765541 1 24789999876333222222 111 122
Q ss_pred -----Cc--cEEEEcCccccccccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCC
Q 009708 386 -----NS--VIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPG 458 (528)
Q Consensus 386 -----~~--~i~~~~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpG 458 (528)
.+ .++++.+|+.+........||+|++|+=. -.++|++ |. .+++....++++||
T Consensus 139 ~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~Fs-----P~~np~~-W~-------------~~~~~~l~~~~~~~ 199 (662)
T PRK01747 139 RLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFA-----PAKNPDM-WS-------------PNLFNALARLARPG 199 (662)
T ss_pred EEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCC-----CccChhh-cc-------------HHHHHHHHHHhCCC
Confidence 11 35577789887665444569999999522 2256765 43 45688889999999
Q ss_pred CEEEEEcCCCCchhhHHHHHHHHhhCCCceEecC
Q 009708 459 GVLVYSTCSIDPEENEERVEAFLLRHPEFSIDPA 492 (528)
Q Consensus 459 G~LvysTcs~~~~Ene~~v~~~l~~~~~~~~~~~ 492 (528)
|+++-.|++ ..|..-|... +|++...
T Consensus 200 ~~~~t~t~a-------~~vr~~l~~~-GF~v~~~ 225 (662)
T PRK01747 200 ATLATFTSA-------GFVRRGLQEA-GFTVRKV 225 (662)
T ss_pred CEEEEeehH-------HHHHHHHHHc-CCeeeec
Confidence 999955443 2444444443 4555443
No 284
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=95.87 E-value=0.015 Score=57.79 Aligned_cols=156 Identities=21% Similarity=0.167 Sum_probs=83.0
Q ss_pred CCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCC----------------------------
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVN---------------------------- 386 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~---------------------------- 386 (528)
.|.++||+||||-..-+.-|. .--..|+..|..+.-.+.+++-++.-+.-
T Consensus 56 ~g~~llDiGsGPtiy~~lsa~--~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~ 133 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQLLSAC--EWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRR 133 (256)
T ss_dssp -EEEEEEES-TT--GGGTTGG--GTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHhhhhHH--HhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence 477999999999443222221 22347999999999888776655432210
Q ss_pred ccEEEEcCccccccccC-----CCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEE
Q 009708 387 SVIRTIHADLRTFADNS-----TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVL 461 (528)
Q Consensus 387 ~~i~~~~~D~~~~~~~~-----~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~L 461 (528)
..-.++.+|+++.++.. +.+||.|++- =| .+..-.-...+...+++..++|||||.|
T Consensus 134 ~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~-fc-----------------LE~a~~d~~~y~~al~ni~~lLkpGG~L 195 (256)
T PF01234_consen 134 AVKQVVPCDVTQPNPLDPPVVLPPKFDCVISS-FC-----------------LESACKDLDEYRRALRNISSLLKPGGHL 195 (256)
T ss_dssp HEEEEEE--TTSSSTTTTS-SS-SSEEEEEEE-SS-----------------HHHH-SSHHHHHHHHHHHHTTEEEEEEE
T ss_pred hhceEEEeeccCCCCCCccccCccchhhhhhh-HH-----------------HHHHcCCHHHHHHHHHHHHHHcCCCcEE
Confidence 01235677776654332 2358887741 11 1111111234566799999999999999
Q ss_pred EEEcCC---C---------CchhhHHHHHHHHhhCCCceEecCCCCCCCccccCCceEEEcCCCCCCCceEEEEEEe
Q 009708 462 VYSTCS---I---------DPEENEERVEAFLLRHPEFSIDPADGLVPSDFVTKHGFFFSDPIKHSLDGAFAARLVR 526 (528)
Q Consensus 462 vysTcs---~---------~~~Ene~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~P~~~~~dGff~a~l~k 526 (528)
+....- . .-.-|++.|...|++. +|.+..... .-...+.+|.|++.=+|
T Consensus 196 il~~~l~~t~Y~vG~~~F~~l~l~ee~v~~al~~a-G~~i~~~~~---------------~~~~~d~~~~~f~~a~K 256 (256)
T PF01234_consen 196 ILAGVLGSTYYMVGGHKFPCLPLNEEFVREALEEA-GFDIEDLEK---------------QSKVSDYEGMFFLVARK 256 (256)
T ss_dssp EEEEESS-SEEEETTEEEE---B-HHHHHHHHHHT-TEEEEEEEG----------------TTTB---EEEEEEEEE
T ss_pred EEEEEcCceeEEECCEecccccCCHHHHHHHHHHc-CCEEEeccc---------------ccCcCCCCcEEEEEEeC
Confidence 965331 0 0123556777777764 566654420 01123557777776554
No 285
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=95.85 E-value=0.016 Score=60.02 Aligned_cols=81 Identities=20% Similarity=0.353 Sum_probs=60.7
Q ss_pred CeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccC-CC-CCCEEEEcC
Q 009708 337 QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS-TV-KCDKVLLDA 414 (528)
Q Consensus 337 ~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~-~~-~fD~Vl~D~ 414 (528)
-+++|+|||.||..+-+... +---+.++|+++.+++..+.|... ..++..|...+.... .. .+|+|+.-|
T Consensus 4 ~~~idLFsG~GG~~lGf~~a--gf~~~~a~Eid~~a~~ty~~n~~~------~~~~~~di~~~~~~~~~~~~~DvligGp 75 (328)
T COG0270 4 MKVIDLFAGIGGLSLGFEEA--GFEIVFANEIDPPAVATYKANFPH------GDIILGDIKELDGEALRKSDVDVLIGGP 75 (328)
T ss_pred ceEEeeccCCchHHHHHHhc--CCeEEEEEecCHHHHHHHHHhCCC------CceeechHhhcChhhccccCCCEEEeCC
Confidence 47999999999999777653 223578999999999998888653 235667776654332 12 799999999
Q ss_pred CCCCCccccCC
Q 009708 415 PCSGLGVLSKR 425 (528)
Q Consensus 415 Pcsg~G~~~~~ 425 (528)
||-+..+.+++
T Consensus 76 PCQ~FS~aG~r 86 (328)
T COG0270 76 PCQDFSIAGKR 86 (328)
T ss_pred CCcchhhcCcc
Confidence 99887776655
No 286
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=95.82 E-value=0.19 Score=46.58 Aligned_cols=126 Identities=19% Similarity=0.207 Sum_probs=76.3
Q ss_pred eEeecchHHHHHHhcC--CCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcC
Q 009708 317 CAVQDESAGLVVAVVD--PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHA 394 (528)
Q Consensus 317 ~~~Qd~~s~l~~~~l~--~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~ 394 (528)
|+.-|.++..++..+. ..++.+|+=+||=+-...+.- ......+++-.|++.+- +..|-+ .++.-
T Consensus 5 fwYs~~T~~~l~~~l~~~~~~~~~iaclstPsl~~~l~~--~~~~~~~~~Lle~D~RF--------~~~~~~---~F~fy 71 (162)
T PF10237_consen 5 FWYSDETAEFLARELLDGALDDTRIACLSTPSLYEALKK--ESKPRIQSFLLEYDRRF--------EQFGGD---EFVFY 71 (162)
T ss_pred cccCHHHHHHHHHHHHHhcCCCCEEEEEeCcHHHHHHHh--hcCCCccEEEEeecchH--------HhcCCc---ceEEC
Confidence 3444566655555433 245678999998776555443 22345688999998544 233322 35556
Q ss_pred cccccc---ccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCch
Q 009708 395 DLRTFA---DNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPE 471 (528)
Q Consensus 395 D~~~~~---~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~ 471 (528)
|..... ....++||+|++|||.-. ++ .+.+....+..++|+++.++.+| +.
T Consensus 72 D~~~p~~~~~~l~~~~d~vv~DPPFl~----------------~e------c~~k~a~ti~~L~k~~~kii~~T----g~ 125 (162)
T PF10237_consen 72 DYNEPEELPEELKGKFDVVVIDPPFLS----------------EE------CLTKTAETIRLLLKPGGKIILCT----GE 125 (162)
T ss_pred CCCChhhhhhhcCCCceEEEECCCCCC----------------HH------HHHHHHHHHHHHhCccceEEEec----HH
Confidence 665422 222478999999999921 11 12223444555567788888755 56
Q ss_pred hhHHHHHHHH
Q 009708 472 ENEERVEAFL 481 (528)
Q Consensus 472 Ene~~v~~~l 481 (528)
++++.+.+.+
T Consensus 126 ~~~~~~~~ll 135 (162)
T PF10237_consen 126 EMEELIKKLL 135 (162)
T ss_pred HHHHHHHHHh
Confidence 7777777777
No 287
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=95.77 E-value=0.028 Score=55.13 Aligned_cols=94 Identities=21% Similarity=0.387 Sum_probs=62.3
Q ss_pred HHHhcCCCCC-CeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCC
Q 009708 327 VVAVVDPQPG-QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTV 405 (528)
Q Consensus 327 ~~~~l~~~~g-~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~ 405 (528)
++..+...|+ ..|-|+|||-+-++. . ..-.|+++|+.+ +. -.++.+|+.+.+- ..+
T Consensus 171 ii~~ik~r~~~~vIaD~GCGEakiA~----~--~~~kV~SfDL~a--------------~~--~~V~~cDm~~vPl-~d~ 227 (325)
T KOG3045|consen 171 IIRKIKRRPKNIVIADFGCGEAKIAS----S--ERHKVHSFDLVA--------------VN--ERVIACDMRNVPL-EDE 227 (325)
T ss_pred HHHHHHhCcCceEEEecccchhhhhh----c--cccceeeeeeec--------------CC--CceeeccccCCcC-ccC
Confidence 3344444444 478999999987654 1 235799999742 22 2456789888654 357
Q ss_pred CCCEEEEcCCCC-CCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 406 KCDKVLLDAPCS-GLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 406 ~fD~Vl~D~Pcs-g~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
+.|++++ |- -.|+ ++ ..++.+|.++||+||.|.++..+
T Consensus 228 svDvaV~---CLSLMgt--------------n~-------~df~kEa~RiLk~gG~l~IAEv~ 266 (325)
T KOG3045|consen 228 SVDVAVF---CLSLMGT--------------NL-------ADFIKEANRILKPGGLLYIAEVK 266 (325)
T ss_pred cccEEEe---eHhhhcc--------------cH-------HHHHHHHHHHhccCceEEEEehh
Confidence 8999886 52 1222 22 35699999999999999876543
No 288
>PRK11524 putative methyltransferase; Provisional
Probab=95.54 E-value=0.023 Score=57.63 Aligned_cols=46 Identities=15% Similarity=0.170 Sum_probs=38.7
Q ss_pred CCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHH
Q 009708 334 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKL 382 (528)
Q Consensus 334 ~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~ 382 (528)
.+|+.|||.+||+|..++++.++ +-+.+|+|++++.++.+++++..
T Consensus 207 ~~GD~VLDPF~GSGTT~~AA~~l---gR~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 207 NPGDIVLDPFAGSFTTGAVAKAS---GRKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred CCCCEEEECCCCCcHHHHHHHHc---CCCEEEEeCCHHHHHHHHHHHHh
Confidence 68999999999999876655543 45799999999999999998754
No 289
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=95.38 E-value=0.31 Score=46.89 Aligned_cols=92 Identities=16% Similarity=0.145 Sum_probs=64.5
Q ss_pred ecchHHHHHHhcCCCCCCeEEEeCCccch--HH--HHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCc
Q 009708 320 QDESAGLVVAVVDPQPGQSIVDCCAAPGG--KT--LYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHAD 395 (528)
Q Consensus 320 Qd~~s~l~~~~l~~~~g~~VLDl~aG~G~--kt--~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D 395 (528)
+...+.++..+..-..-..+++.+|+-|. .| +.+|.+ +.+|++++|-.++..+...++.+...|+.+.++|+.+|
T Consensus 26 ep~~aEfISAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr-~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~ 104 (218)
T PF07279_consen 26 EPGVAEFISALAAGWNAKLIVEAWSSGGAISTTIALAAAAR-QTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGE 104 (218)
T ss_pred CCCHHHHHHHHhccccceEEEEEecCCCchHhHHHHHHHHH-hcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecC
Confidence 44455566555554455679999776443 33 334443 45689999999999998899999988988777998888
Q ss_pred cc-cccccCCCCCCEEEEc
Q 009708 396 LR-TFADNSTVKCDKVLLD 413 (528)
Q Consensus 396 ~~-~~~~~~~~~fD~Vl~D 413 (528)
.. .+.... ...|.+++|
T Consensus 105 ~~e~~~~~~-~~iDF~vVD 122 (218)
T PF07279_consen 105 APEEVMPGL-KGIDFVVVD 122 (218)
T ss_pred CHHHHHhhc-cCCCEEEEe
Confidence 53 344333 569999998
No 290
>PRK10458 DNA cytosine methylase; Provisional
Probab=95.34 E-value=0.072 Score=57.64 Aligned_cols=83 Identities=18% Similarity=0.257 Sum_probs=57.6
Q ss_pred CCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc-------------
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN------------- 402 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~------------- 402 (528)
.-+++|++||.||.++-+-.. +.-.|.++|+++.+.+.-+.|.... ++ ..++++|+..+...
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~a--G~~~v~a~Eid~~A~~TY~~N~~~~--p~-~~~~~~DI~~i~~~~~~~~~~~~~~~~ 162 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAI--GGQCVFTSEWNKHAVRTYKANWYCD--PA-THRFNEDIRDITLSHKEGVSDEEAAEH 162 (467)
T ss_pred CceEEEeCcCccHHHHHHHHc--CCEEEEEEechHHHHHHHHHHcCCC--Cc-cceeccChhhCccccccccchhhhhhh
Confidence 348999999999999887553 2336789999999999888875211 11 23455666655311
Q ss_pred ---CCCCCCEEEEcCCCCCCcccc
Q 009708 403 ---STVKCDKVLLDAPCSGLGVLS 423 (528)
Q Consensus 403 ---~~~~fD~Vl~D~Pcsg~G~~~ 423 (528)
....+|+++.-|||.+....+
T Consensus 163 ~~~~~p~~DvL~gGpPCQ~FS~AG 186 (467)
T PRK10458 163 IRQHIPDHDVLLAGFPCQPFSLAG 186 (467)
T ss_pred hhccCCCCCEEEEcCCCCccchhc
Confidence 112589999999998776554
No 291
>PRK11524 putative methyltransferase; Provisional
Probab=95.22 E-value=0.042 Score=55.72 Aligned_cols=72 Identities=19% Similarity=0.164 Sum_probs=46.3
Q ss_pred EEEEcCccccccccC-CCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 389 IRTIHADLRTFADNS-TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 389 i~~~~~D~~~~~~~~-~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
..++++|+.++.... .++||+|++|||+.. |.-.....-.|. ..+.......++..+.++|||||.+++. |.
T Consensus 9 ~~i~~gD~~~~l~~l~~~siDlIitDPPY~~-~~~~~~~~~~~~-----~~~~~~~l~~~l~~~~rvLK~~G~i~i~-~~ 81 (284)
T PRK11524 9 KTIIHGDALTELKKIPSESVDLIFADPPYNI-GKNFDGLIEAWK-----EDLFIDWLYEWIDECHRVLKKQGTMYIM-NS 81 (284)
T ss_pred CEEEeccHHHHHHhcccCcccEEEECCCccc-cccccccccccc-----HHHHHHHHHHHHHHHHHHhCCCcEEEEE-cC
Confidence 468899999865332 568999999999942 110001111121 2233344567899999999999998864 44
No 292
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=95.21 E-value=0.1 Score=53.88 Aligned_cols=96 Identities=19% Similarity=0.242 Sum_probs=64.9
Q ss_pred cCCCCCCeEEEeCCc-cchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCE
Q 009708 331 VDPQPGQSIVDCCAA-PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDK 409 (528)
Q Consensus 331 l~~~~g~~VLDl~aG-~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~ 409 (528)
.+..||++|+=.|+| -|..++++|..+. .+|+++|++++.++.++ ++|.+..+.....|.... ..+.||.
T Consensus 162 ~~~~pG~~V~I~G~GGlGh~avQ~Aka~g--a~Via~~~~~~K~e~a~----~lGAd~~i~~~~~~~~~~---~~~~~d~ 232 (339)
T COG1064 162 ANVKPGKWVAVVGAGGLGHMAVQYAKAMG--AEVIAITRSEEKLELAK----KLGADHVINSSDSDALEA---VKEIADA 232 (339)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHcC--CeEEEEeCChHHHHHHH----HhCCcEEEEcCCchhhHH---hHhhCcE
Confidence 356789998888877 4457788888764 79999999999998765 456653222111222221 1234999
Q ss_pred EEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 410 VLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 410 Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
|+.-.| . .-+..+++.|++||++|..
T Consensus 233 ii~tv~-~----------------------------~~~~~~l~~l~~~G~~v~v 258 (339)
T COG1064 233 IIDTVG-P----------------------------ATLEPSLKALRRGGTLVLV 258 (339)
T ss_pred EEECCC-h----------------------------hhHHHHHHHHhcCCEEEEE
Confidence 997544 1 1277788999999999854
No 293
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=95.20 E-value=0.031 Score=53.74 Aligned_cols=43 Identities=19% Similarity=0.285 Sum_probs=32.1
Q ss_pred CCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHH
Q 009708 333 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNE 378 (528)
Q Consensus 333 ~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~ 378 (528)
..+|+.|||.+||+|..+.++.++ +-+.+|+|+++..++.+++
T Consensus 189 t~~gdiVlDpF~GSGTT~~aa~~l---~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 189 TNPGDIVLDPFAGSGTTAVAAEEL---GRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp S-TT-EEEETT-TTTHHHHHHHHT---T-EEEEEESSHHHHHHHHH
T ss_pred hccceeeehhhhccChHHHHHHHc---CCeEEEEeCCHHHHHHhcC
Confidence 357999999999999876665543 4579999999999998864
No 294
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=94.89 E-value=0.04 Score=53.22 Aligned_cols=83 Identities=12% Similarity=0.086 Sum_probs=58.3
Q ss_pred CCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHc-CCCccEEEEcC-cccccccc---CCCCCCE
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLH-QVNSVIRTIHA-DLRTFADN---STVKCDK 409 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~-g~~~~i~~~~~-D~~~~~~~---~~~~fD~ 409 (528)
++-++||+|.|.--+=-.+..++- +.+.+|-|+++..++.|+.++..+ ++.+.|++... |-..+.+. ..+.||.
T Consensus 78 ~~i~~LDIGvGAnCIYPliG~~eY-gwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~ 156 (292)
T COG3129 78 KNIRILDIGVGANCIYPLIGVHEY-GWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDA 156 (292)
T ss_pred CceEEEeeccCcccccccccceee-cceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccccccccceeee
Confidence 345789999886554444444332 468999999999999999999988 77776766543 22222111 1468999
Q ss_pred EEEcCCCCC
Q 009708 410 VLLDAPCSG 418 (528)
Q Consensus 410 Vl~D~Pcsg 418 (528)
++||||..+
T Consensus 157 tlCNPPFh~ 165 (292)
T COG3129 157 TLCNPPFHD 165 (292)
T ss_pred EecCCCcch
Confidence 999999854
No 295
>PRK13699 putative methylase; Provisional
Probab=94.84 E-value=0.056 Score=52.93 Aligned_cols=49 Identities=14% Similarity=0.125 Sum_probs=40.3
Q ss_pred CCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcC
Q 009708 333 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQ 384 (528)
Q Consensus 333 ~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g 384 (528)
..+|+.|||.+||+|.....+.+. +-+.+|+|+++...+.+.++++...
T Consensus 161 s~~g~~vlDpf~Gsgtt~~aa~~~---~r~~~g~e~~~~y~~~~~~r~~~~~ 209 (227)
T PRK13699 161 THPNAIVLDPFAGSGSTCVAALQS---GRRYIGIELLEQYHRAGQQRLAAVQ 209 (227)
T ss_pred CCCCCEEEeCCCCCCHHHHHHHHc---CCCEEEEecCHHHHHHHHHHHHHHH
Confidence 458999999999999877665543 4578999999999999999887643
No 296
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=94.71 E-value=0.28 Score=50.74 Aligned_cols=101 Identities=15% Similarity=0.216 Sum_probs=60.0
Q ss_pred CCCCCCeEEEeCCcc-chHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEE
Q 009708 332 DPQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKV 410 (528)
Q Consensus 332 ~~~~g~~VLDl~aG~-G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~V 410 (528)
...+|++||=.|||+ |..++++|+.+ +..+|+++|.++++++.++ .+|.+..+..-..|....... .+.||+|
T Consensus 166 ~~~~g~~VlV~G~G~vG~~aiqlak~~-G~~~Vi~~~~~~~~~~~a~----~lGa~~vi~~~~~~~~~~~~~-~g~~D~v 239 (343)
T PRK09880 166 GDLQGKRVFVSGVGPIGCLIVAAVKTL-GAAEIVCADVSPRSLSLAR----EMGADKLVNPQNDDLDHYKAE-KGYFDVS 239 (343)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEEeCCHHHHHHHH----HcCCcEEecCCcccHHHHhcc-CCCCCEE
Confidence 445788998887643 33445556554 2347999999999987765 457653221111122222211 2358988
Q ss_pred EEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcC
Q 009708 411 LLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTC 466 (528)
Q Consensus 411 l~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTc 466 (528)
|- |+|.. ..+..+.++|++||+++....
T Consensus 240 id---~~G~~-------------------------~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 240 FE---VSGHP-------------------------SSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred EE---CCCCH-------------------------HHHHHHHHHhhcCCEEEEEcc
Confidence 73 44311 126677888999999986544
No 297
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=94.39 E-value=0.057 Score=57.89 Aligned_cols=103 Identities=21% Similarity=0.314 Sum_probs=75.2
Q ss_pred eEEEeCCccchHH---HHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEcC
Q 009708 338 SIVDCCAAPGGKT---LYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDA 414 (528)
Q Consensus 338 ~VLDl~aG~G~kt---~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~ 414 (528)
.|+=+|+|-|-.. +.+|.......+++|||.+|.++-.++. .+....+++|+++..|++.+... .++.|+++...
T Consensus 370 VimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n~~~W~~~Vtii~~DMR~w~ap-~eq~DI~VSEL 447 (649)
T KOG0822|consen 370 VIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RNFECWDNRVTIISSDMRKWNAP-REQADIIVSEL 447 (649)
T ss_pred EEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-hchhhhcCeeEEEeccccccCCc-hhhccchHHHh
Confidence 5788999998754 5566655556789999999999988876 56667788899999999998742 36789877432
Q ss_pred CCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEE
Q 009708 415 PCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLV 462 (528)
Q Consensus 415 Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lv 462 (528)
.|.++-+. .+ -+.|+-+.++|||.|+.+
T Consensus 448 ----LGSFGDNE-----LS-----------PECLDG~q~fLkpdgIsI 475 (649)
T KOG0822|consen 448 ----LGSFGDNE-----LS-----------PECLDGAQKFLKPDGISI 475 (649)
T ss_pred ----hccccCcc-----CC-----------HHHHHHHHhhcCCCceEc
Confidence 22222221 11 134888999999999887
No 298
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=94.25 E-value=0.41 Score=47.97 Aligned_cols=41 Identities=12% Similarity=-0.117 Sum_probs=34.5
Q ss_pred CCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHH
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNE 378 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~ 378 (528)
...+||=.|||-|..+..+|.+ +-.+.|+|.|-.|+-...-
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~---G~~~~gnE~S~~Mll~s~f 96 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKL---GYAVQGNEFSYFMLLASNF 96 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhc---cceEEEEEchHHHHHHHHH
Confidence 3568999999999999999986 5689999999998755444
No 299
>KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only]
Probab=94.15 E-value=0.031 Score=53.37 Aligned_cols=92 Identities=20% Similarity=0.294 Sum_probs=66.9
Q ss_pred HHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccc-----
Q 009708 327 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD----- 401 (528)
Q Consensus 327 ~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~----- 401 (528)
+.+.+.|.+|...+||.-|.||.|..+.+. .+..++++.|.+|-+.+.++......-.. .+..+.+.+..+..
T Consensus 35 vl~~lspv~g~sf~DmTfGagGHt~~ilqk-~se~k~yalDrDP~A~~La~~~s~el~~~-~l~a~Lg~Fs~~~~l~~~~ 112 (303)
T KOG2782|consen 35 VLDILSPVRGRSFVDMTFGAGGHTSSILQK-HSELKNYALDRDPVARKLAHFHSDELMHP-TLKAVLGNFSYIKSLIADT 112 (303)
T ss_pred HHHHcCCCCCceEEEEeccCCcchHHHHHh-CcHhhhhhhccChHHHHHHHHhhHhhcch-hHHHHHhhhHHHHHHHHHh
Confidence 456788999999999999999999999887 45678999999999998887766432211 22233333333221
Q ss_pred -cCCCCCCEEEEcCCCCCCc
Q 009708 402 -NSTVKCDKVLLDAPCSGLG 420 (528)
Q Consensus 402 -~~~~~fD~Vl~D~Pcsg~G 420 (528)
-.+..||-|+.|--||+.-
T Consensus 113 gl~~~~vDGiLmDlGcSSMQ 132 (303)
T KOG2782|consen 113 GLLDVGVDGILMDLGCSSMQ 132 (303)
T ss_pred CCCcCCcceEEeecCccccc
Confidence 1146899999999998753
No 300
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=94.07 E-value=0.061 Score=51.88 Aligned_cols=107 Identities=13% Similarity=0.207 Sum_probs=70.7
Q ss_pred CCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEcCC
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAP 415 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~P 415 (528)
...++|+||+-|....++... +-++++-+|.|-.+++.++.- +..++. +....+|-..++ ....+||+||.
T Consensus 73 fp~a~diGcs~G~v~rhl~~e--~vekli~~DtS~~M~~s~~~~-qdp~i~--~~~~v~DEE~Ld-f~ens~DLiis--- 143 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGE--GVEKLIMMDTSYDMIKSCRDA-QDPSIE--TSYFVGDEEFLD-FKENSVDLIIS--- 143 (325)
T ss_pred CcceeecccchhhhhHHHHhc--chhheeeeecchHHHHHhhcc-CCCceE--EEEEecchhccc-ccccchhhhhh---
Confidence 347999999999999988764 467899999999999877642 122332 344556655544 33578999984
Q ss_pred CCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchhh
Q 009708 416 CSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEEN 473 (528)
Q Consensus 416 csg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~En 473 (528)
+.+. +|. ..+. .-+.++...|||.|.++ .|+..++.
T Consensus 144 --Slsl-------HW~------NdLP----g~m~~ck~~lKPDg~Fi---asmlggdT 179 (325)
T KOG2940|consen 144 --SLSL-------HWT------NDLP----GSMIQCKLALKPDGLFI---ASMLGGDT 179 (325)
T ss_pred --hhhh-------hhh------ccCc----hHHHHHHHhcCCCccch---hHHhcccc
Confidence 3332 332 1111 12667888899999888 45555443
No 301
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=94.06 E-value=0.054 Score=47.43 Aligned_cols=90 Identities=23% Similarity=0.280 Sum_probs=59.0
Q ss_pred ccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc-C-CCCCCEEEEcCCCCCCccc
Q 009708 345 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-S-TVKCDKVLLDAPCSGLGVL 422 (528)
Q Consensus 345 G~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~-~-~~~fD~Vl~D~Pcsg~G~~ 422 (528)
|-|..++++|+.++ .+|+++|.++.+++.++ ++|.+..+.....|..+.... . ...+|.||- |+|.+.
T Consensus 1 ~vG~~a~q~ak~~G--~~vi~~~~~~~k~~~~~----~~Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vid---~~g~~~- 70 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG--AKVIATDRSEEKLELAK----ELGADHVIDYSDDDFVEQIRELTGGRGVDVVID---CVGSGD- 70 (130)
T ss_dssp HHHHHHHHHHHHTT--SEEEEEESSHHHHHHHH----HTTESEEEETTTSSHHHHHHHHTTTSSEEEEEE---SSSSHH-
T ss_pred ChHHHHHHHHHHcC--CEEEEEECCHHHHHHHH----hhcccccccccccccccccccccccccceEEEE---ecCcHH-
Confidence 45888999998864 89999999999987764 567553222112222221111 1 247998875 544222
Q ss_pred cCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCC
Q 009708 423 SKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSI 468 (528)
Q Consensus 423 ~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~ 468 (528)
.++.+..++++||+++.....-
T Consensus 71 ------------------------~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 71 ------------------------TLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp ------------------------HHHHHHHHEEEEEEEEEESSTS
T ss_pred ------------------------HHHHHHHHhccCCEEEEEEccC
Confidence 4888999999999999765543
No 302
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=93.93 E-value=0.012 Score=55.65 Aligned_cols=92 Identities=27% Similarity=0.377 Sum_probs=57.5
Q ss_pred CCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEcCC
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAP 415 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~P 415 (528)
..++||+|||-|-.|..++-.+ .+|+|.|.|..|...++. .+.. .+..+ +... .+-+||+|+|
T Consensus 113 ~~~lLDlGAGdGeit~~m~p~f---eevyATElS~tMr~rL~k----k~yn-Vl~~~-----ew~~-t~~k~dli~c--- 175 (288)
T KOG3987|consen 113 PVTLLDLGAGDGEITLRMAPTF---EEVYATELSWTMRDRLKK----KNYN-VLTEI-----EWLQ-TDVKLDLILC--- 175 (288)
T ss_pred CeeEEeccCCCcchhhhhcchH---HHHHHHHhhHHHHHHHhh----cCCc-eeeeh-----hhhh-cCceeehHHH---
Confidence 3589999999999999998653 469999999888766553 3332 12211 1111 1246888874
Q ss_pred CCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcC-CCEEEE
Q 009708 416 CSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKP-GGVLVY 463 (528)
Q Consensus 416 csg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~Lkp-GG~Lvy 463 (528)
.-++.|. ....++|+.....|.| +|+++.
T Consensus 176 ---lNlLDRc----------------~~p~kLL~Di~~vl~psngrviv 205 (288)
T KOG3987|consen 176 ---LNLLDRC----------------FDPFKLLEDIHLVLAPSNGRVIV 205 (288)
T ss_pred ---HHHHHhh----------------cChHHHHHHHHHHhccCCCcEEE
Confidence 1111111 1123468888888988 787663
No 303
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=93.83 E-value=0.22 Score=52.09 Aligned_cols=102 Identities=25% Similarity=0.332 Sum_probs=65.0
Q ss_pred CCCCCeEEEeCCccch-HHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcC-cccccc-c-cCCCCCC
Q 009708 333 PQPGQSIVDCCAAPGG-KTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHA-DLRTFA-D-NSTVKCD 408 (528)
Q Consensus 333 ~~~g~~VLDl~aG~G~-kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~-D~~~~~-~-~~~~~fD 408 (528)
..++.+|+=+||||=| .+.++++. .+..+|+++|.++.+++.+++.. +.+ .+..... +..... . .....||
T Consensus 166 ~~~~~~V~V~GaGpIGLla~~~a~~-~Ga~~Viv~d~~~~Rl~~A~~~~---g~~-~~~~~~~~~~~~~~~~~t~g~g~D 240 (350)
T COG1063 166 VRPGGTVVVVGAGPIGLLAIALAKL-LGASVVIVVDRSPERLELAKEAG---GAD-VVVNPSEDDAGAEILELTGGRGAD 240 (350)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHH-cCCceEEEeCCCHHHHHHHHHhC---CCe-EeecCccccHHHHHHHHhCCCCCC
Confidence 3455599999999944 55666665 45689999999999999887632 222 1111111 111111 1 1124699
Q ss_pred EEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 409 KVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 409 ~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
.|+- |+|.. ..+..+.+++++||++++.--.
T Consensus 241 ~vie---~~G~~-------------------------~~~~~ai~~~r~gG~v~~vGv~ 271 (350)
T COG1063 241 VVIE---AVGSP-------------------------PALDQALEALRPGGTVVVVGVY 271 (350)
T ss_pred EEEE---CCCCH-------------------------HHHHHHHHHhcCCCEEEEEecc
Confidence 9985 66511 1488899999999999976544
No 304
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=93.75 E-value=0.17 Score=49.89 Aligned_cols=72 Identities=19% Similarity=0.102 Sum_probs=51.7
Q ss_pred CCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEE
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 412 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~ 412 (528)
..+|+|+|||-=-+++-.... .++..++|+||+...++.+..-+..+|.+. ++...|...-.+ ....|+.|+
T Consensus 106 p~sVlDigCGlNPlalp~~~~-~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~--~~~v~Dl~~~~~--~~~~DlaLl 177 (251)
T PF07091_consen 106 PDSVLDIGCGLNPLALPWMPE-APGATYIAYDIDSQLVEFLNAFLAVLGVPH--DARVRDLLSDPP--KEPADLALL 177 (251)
T ss_dssp -SEEEEET-TTCHHHHHTTTS-STT-EEEEEESBHHHHHHHHHHHHHTT-CE--EEEEE-TTTSHT--TSEESEEEE
T ss_pred CchhhhhhccCCceehhhccc-CCCcEEEEEeCCHHHHHHHHHHHHhhCCCc--ceeEeeeeccCC--CCCcchhhH
Confidence 569999999998888755543 345699999999999999999999999874 455557655432 356788876
No 305
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=93.63 E-value=0.5 Score=46.86 Aligned_cols=124 Identities=19% Similarity=0.318 Sum_probs=76.9
Q ss_pred CCCeEEEeCCccchHHHHHHHHcC----CCcEEEEEcCCh--------------------------HHHHHHHHHHHHcC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLS----GQGLVYAIDINK--------------------------GRLRILNETAKLHQ 384 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~----~~~~v~avD~s~--------------------------~~l~~~~~n~~~~g 384 (528)
|| .|+++||--|+.++.++..+. ..-+|+++|--. -.++..++|+++.|
T Consensus 75 pG-divE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~g 153 (248)
T PF05711_consen 75 PG-DIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYG 153 (248)
T ss_dssp -S-EEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTT
T ss_pred Ce-EEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcC
Confidence 44 799999999998877765542 234688887511 14566777777777
Q ss_pred C-CccEEEEcCccccccccC-CCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEE
Q 009708 385 V-NSVIRTIHADLRTFADNS-TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLV 462 (528)
Q Consensus 385 ~-~~~i~~~~~D~~~~~~~~-~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lv 462 (528)
+ ++++.++.+.+.+..+.. .+++-++-+|.-. .+--...|+..+..|.|||+|+
T Consensus 154 l~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~Dl------------------------YesT~~aLe~lyprl~~GGiIi 209 (248)
T PF05711_consen 154 LLDDNVRFVKGWFPDTLPDAPIERIALLHLDCDL------------------------YESTKDALEFLYPRLSPGGIII 209 (248)
T ss_dssp TSSTTEEEEES-HHHHCCC-TT--EEEEEE---S------------------------HHHHHHHHHHHGGGEEEEEEEE
T ss_pred CCcccEEEECCcchhhhccCCCccEEEEEEeccc------------------------hHHHHHHHHHHHhhcCCCeEEE
Confidence 5 346999999987654432 3456666666332 1223456899999999999999
Q ss_pred EEcCCCCchhhHHHHHHHHhhCC
Q 009708 463 YSTCSIDPEENEERVEAFLLRHP 485 (528)
Q Consensus 463 ysTcs~~~~Ene~~v~~~l~~~~ 485 (528)
+-.-.. +.. ...|.+|.++|.
T Consensus 210 ~DDY~~-~gc-r~AvdeF~~~~g 230 (248)
T PF05711_consen 210 FDDYGH-PGC-RKAVDEFRAEHG 230 (248)
T ss_dssp ESSTTT-HHH-HHHHHHHHHHTT
T ss_pred EeCCCC-hHH-HHHHHHHHHHcC
Confidence 877655 333 456788988873
No 306
>PRK13699 putative methylase; Provisional
Probab=93.51 E-value=0.098 Score=51.23 Aligned_cols=73 Identities=12% Similarity=0.103 Sum_probs=44.7
Q ss_pred EEEEcCccccccccC-CCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 389 IRTIHADLRTFADNS-TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 389 i~~~~~D~~~~~~~~-~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
++++++|+.+..... .+++|+|+.|||+. .|.-.+... .+ . .....+.....+.++.++|||||.++. -|+
T Consensus 2 ~~l~~gD~le~l~~lpd~SVDLIiTDPPY~-i~~~~~~~~-~~--~---~~~~~ew~~~~l~E~~RVLKpgg~l~i-f~~ 73 (227)
T PRK13699 2 SRFILGNCIDVMARFPDNAVDFILTDPPYL-VGFRDRQGR-TI--A---GDKTDEWLQPACNEMYRVLKKDALMVS-FYG 73 (227)
T ss_pred CeEEechHHHHHHhCCccccceEEeCCCcc-cccccCCCc-cc--c---cccHHHHHHHHHHHHHHHcCCCCEEEE-Eec
Confidence 357889998765433 57899999999994 222111000 00 0 011223445779999999999987763 355
Q ss_pred CC
Q 009708 468 ID 469 (528)
Q Consensus 468 ~~ 469 (528)
..
T Consensus 74 ~~ 75 (227)
T PRK13699 74 WN 75 (227)
T ss_pred cc
Confidence 44
No 307
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=93.35 E-value=0.42 Score=45.09 Aligned_cols=128 Identities=25% Similarity=0.332 Sum_probs=78.6
Q ss_pred CCCeEEEeCCccchHHHHHHHHcCCC---cEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc-----CCCC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLSGQ---GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-----STVK 406 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~~~---~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~-----~~~~ 406 (528)
..+.|++.|+.-||.+++.|..|-.. .+|+++|++-.-+.-+... .+ .|.++.++.++..-. ....
T Consensus 69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e-----~p-~i~f~egss~dpai~eqi~~~~~~ 142 (237)
T COG3510 69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE-----VP-DILFIEGSSTDPAIAEQIRRLKNE 142 (237)
T ss_pred CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc-----CC-CeEEEeCCCCCHHHHHHHHHHhcC
Confidence 34689999999999999988866433 4899999986554332221 44 489999998775321 1223
Q ss_pred CCEEE--EcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCC--c---------hhh
Q 009708 407 CDKVL--LDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSID--P---------EEN 473 (528)
Q Consensus 407 fD~Vl--~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~--~---------~En 473 (528)
+-.|+ +|.-.| .+.+ + .-|+....+|.-|-++|.-..-+. | ...
T Consensus 143 y~kIfvilDsdHs----------------~~hv--L-----Ael~~~~pllsaG~Y~vVeDs~v~dlp~~~~p~~~g~gP 199 (237)
T COG3510 143 YPKIFVILDSDHS----------------MEHV--L-----AELKLLAPLLSAGDYLVVEDSNVNDLPGPVLPWRFGGGP 199 (237)
T ss_pred CCcEEEEecCCch----------------HHHH--H-----HHHHHhhhHhhcCceEEEecccccCCCCcccchhcCCCh
Confidence 44554 332221 1111 1 125555667777888876544322 1 112
Q ss_pred HHHHHHHHhhCC-CceEec
Q 009708 474 EERVEAFLLRHP-EFSIDP 491 (528)
Q Consensus 474 e~~v~~~l~~~~-~~~~~~ 491 (528)
-..|+.|++.|| +|+...
T Consensus 200 ~~AVe~ylr~~p~~yEiD~ 218 (237)
T COG3510 200 YEAVEAYLREFPQDYEIDT 218 (237)
T ss_pred HHHHHHHHHhCCcccccch
Confidence 357889999999 787643
No 308
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=92.89 E-value=0.34 Score=48.65 Aligned_cols=109 Identities=10% Similarity=0.076 Sum_probs=82.3
Q ss_pred CCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHc--CCC-ccEEEEcCccccccccC-CCCCCEEE
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLH--QVN-SVIRTIHADLRTFADNS-TVKCDKVL 411 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~--g~~-~~i~~~~~D~~~~~~~~-~~~fD~Vl 411 (528)
.++||=+|-|-|+.....+.+ ..-+.+.-+|++...++..++-+..+ |.+ .+|.+..+|...+.... .++||+|+
T Consensus 122 pkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVii 200 (337)
T KOG1562|consen 122 PKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVII 200 (337)
T ss_pred CCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEEE
Confidence 468999999999998777765 44567999999999999888876654 332 35888889998887654 57899999
Q ss_pred EcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEE
Q 009708 412 LDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463 (528)
Q Consensus 412 ~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvy 463 (528)
+|-.- -........|+.+.....+.||+||+++.
T Consensus 201 ~dssd------------------pvgpa~~lf~~~~~~~v~~aLk~dgv~~~ 234 (337)
T KOG1562|consen 201 TDSSD------------------PVGPACALFQKPYFGLVLDALKGDGVVCT 234 (337)
T ss_pred EecCC------------------ccchHHHHHHHHHHHHHHHhhCCCcEEEE
Confidence 87221 11233455777888889999999998863
No 309
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=92.83 E-value=0.51 Score=48.87 Aligned_cols=96 Identities=11% Similarity=0.154 Sum_probs=57.9
Q ss_pred CCCCCCeEEEeCCccchH-HHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEE
Q 009708 332 DPQPGQSIVDCCAAPGGK-TLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKV 410 (528)
Q Consensus 332 ~~~~g~~VLDl~aG~G~k-t~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~V 410 (528)
.+++|++||=.|||+=|. ++++++.+.+..+|+++|.++.+++.++. .+.. ..+ .+ +.. ...+|+|
T Consensus 160 ~~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~~~---~~~-~~---~~~--~~g~d~v 226 (341)
T cd08237 160 AHKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----ADET---YLI-DD---IPE--DLAVDHA 226 (341)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cCce---eeh-hh---hhh--ccCCcEE
Confidence 357899999999765332 34555543334689999999999988764 3322 111 11 111 1248987
Q ss_pred EEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEc
Q 009708 411 LLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465 (528)
Q Consensus 411 l~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysT 465 (528)
+ | |+|... . ...+..+.++|++||++++.-
T Consensus 227 i-D--~~G~~~---~-------------------~~~~~~~~~~l~~~G~iv~~G 256 (341)
T cd08237 227 F-E--CVGGRG---S-------------------QSAINQIIDYIRPQGTIGLMG 256 (341)
T ss_pred E-E--CCCCCc---c-------------------HHHHHHHHHhCcCCcEEEEEe
Confidence 6 4 443100 0 113777899999999988544
No 310
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=92.66 E-value=0.13 Score=52.67 Aligned_cols=107 Identities=15% Similarity=0.137 Sum_probs=57.5
Q ss_pred CeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccc----cccccCCCCCCEEEE
Q 009708 337 QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR----TFADNSTVKCDKVLL 412 (528)
Q Consensus 337 ~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~----~~~~~~~~~fD~Vl~ 412 (528)
.+|||+|+|||.-..++-...+.-..++-++.|+..-+......+..+.. ...+...|++ .++. ...|++|++
T Consensus 115 qsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~-~td~r~s~vt~dRl~lp~--ad~ytl~i~ 191 (484)
T COG5459 115 QSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTE-KTDWRASDVTEDRLSLPA--ADLYTLAIV 191 (484)
T ss_pred chhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccc-cCCCCCCccchhccCCCc--cceeehhhh
Confidence 36999999999866555444443345777888876655544433332222 1222233332 2221 234565553
Q ss_pred cCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEc
Q 009708 413 DAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465 (528)
Q Consensus 413 D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysT 465 (528)
- . ++....++..+.. .+++.+.++.|||.||++.
T Consensus 192 ~---------~---eLl~d~~ek~i~~-------~ie~lw~l~~~gg~lVivE 225 (484)
T COG5459 192 L---------D---ELLPDGNEKPIQV-------NIERLWNLLAPGGHLVIVE 225 (484)
T ss_pred h---------h---hhccccCcchHHH-------HHHHHHHhccCCCeEEEEe
Confidence 1 0 0000011122222 5889999999999999854
No 311
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=92.23 E-value=1.1 Score=45.75 Aligned_cols=100 Identities=21% Similarity=0.317 Sum_probs=60.9
Q ss_pred cCCCCCCeEEEeCCcc-chHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccc-ccccCCCCCC
Q 009708 331 VDPQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT-FADNSTVKCD 408 (528)
Q Consensus 331 l~~~~g~~VLDl~aG~-G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~-~~~~~~~~fD 408 (528)
..++++++||..|+|. |..++++|+.+ +.+|++++.++...+.+++ .|++..+.....+... ........+|
T Consensus 161 ~~~~~~~~vli~g~g~vG~~~~~la~~~--G~~V~~~~~s~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~D 234 (338)
T cd08254 161 GEVKPGETVLVIGLGGLGLNAVQIAKAM--GAAVIAVDIKEEKLELAKE----LGADEVLNSLDDSPKDKKAAGLGGGFD 234 (338)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHH----hCCCEEEcCCCcCHHHHHHHhcCCCce
Confidence 3467888999887653 66777777764 3579999999988876643 5654311111111111 0011235689
Q ss_pred EEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 409 KVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 409 ~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
.|+- |+|.+ ..+..+++.|+++|+++..
T Consensus 235 ~vid---~~g~~-------------------------~~~~~~~~~l~~~G~~v~~ 262 (338)
T cd08254 235 VIFD---FVGTQ-------------------------PTFEDAQKAVKPGGRIVVV 262 (338)
T ss_pred EEEE---CCCCH-------------------------HHHHHHHHHhhcCCEEEEE
Confidence 7763 33211 1377788999999998854
No 312
>PRK07576 short chain dehydrogenase; Provisional
Probab=92.19 E-value=2.4 Score=41.90 Aligned_cols=78 Identities=15% Similarity=0.130 Sum_probs=51.3
Q ss_pred CCCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 404 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~ 404 (528)
++.+||=.|+ +|+.+..+++.+. .+.+|++++.++..+......+...+. .+.++..|+.+.... ..
T Consensus 8 ~~k~ilItGa-sggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dv~~~~~i~~~~~~~~~~~ 84 (264)
T PRK07576 8 AGKNVVVVGG-TSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAGP--EGLGVSADVRDYAAVEAAFAQIADEF 84 (264)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCC--ceEEEECCCCCHHHHHHHHHHHHHHc
Confidence 4668888875 6677777766543 345899999998887766655555443 356778888753211 02
Q ss_pred CCCCEEEEcCC
Q 009708 405 VKCDKVLLDAP 415 (528)
Q Consensus 405 ~~fD~Vl~D~P 415 (528)
..+|.|+.++.
T Consensus 85 ~~iD~vi~~ag 95 (264)
T PRK07576 85 GPIDVLVSGAA 95 (264)
T ss_pred CCCCEEEECCC
Confidence 46899998653
No 313
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=92.11 E-value=0.81 Score=48.26 Aligned_cols=50 Identities=24% Similarity=0.285 Sum_probs=39.9
Q ss_pred HhcCCCCCCeEEEeCCcc-chHHHHHHHHcCCCcEEEEEcCChHHHHHHHHH
Q 009708 329 AVVDPQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNET 379 (528)
Q Consensus 329 ~~l~~~~g~~VLDl~aG~-G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n 379 (528)
....+++|++||..|||+ |..+.++|+.++ ..+|+++|.++.+++.+++.
T Consensus 178 ~~~~~~~g~~VlV~g~G~vG~~~~~la~~~g-~~~vi~~~~~~~~~~~~~~~ 228 (386)
T cd08283 178 ELAEVKPGDTVAVWGCGPVGLFAARSAKLLG-AERVIAIDRVPERLEMARSH 228 (386)
T ss_pred hhccCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHc
Confidence 445677899999999888 778888888753 34799999999998887764
No 314
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.58 E-value=0.29 Score=44.13 Aligned_cols=71 Identities=18% Similarity=0.191 Sum_probs=57.4
Q ss_pred HHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccc
Q 009708 328 VAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 400 (528)
Q Consensus 328 ~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~ 400 (528)
.+++.-.+..+.+|+|+|-|...+++++. +.-.-+++|+++..+...+-.+-+.|+...+.+..-|..++.
T Consensus 65 LSll~~n~~GklvDlGSGDGRiVlaaar~--g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~d 135 (199)
T KOG4058|consen 65 LSLLRGNPKGKLVDLGSGDGRIVLAAARC--GLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVD 135 (199)
T ss_pred HHHccCCCCCcEEeccCCCceeehhhhhh--CCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhcc
Confidence 34555566668999999999999988875 234679999999999999999999999877777777776544
No 315
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=91.44 E-value=1.5 Score=43.85 Aligned_cols=112 Identities=20% Similarity=0.134 Sum_probs=65.0
Q ss_pred CeEEEeCCcc--chHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccC-----CCCCC-
Q 009708 337 QSIVDCCAAP--GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS-----TVKCD- 408 (528)
Q Consensus 337 ~~VLDl~aG~--G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~-----~~~fD- 408 (528)
...||+|||- -+.+=++|+...+..+|+-||.+|-.+..++..+....- +...++++|+++...-. .+-+|
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~-g~t~~v~aD~r~p~~iL~~p~~~~~lD~ 148 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPR-GRTAYVQADLRDPEAILAHPEVRGLLDF 148 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT-SEEEEEE--TT-HHHHHCSHHHHCC--T
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC-ccEEEEeCCCCCHHHHhcCHHHHhcCCC
Confidence 4799999994 345667888888899999999999999988887766532 24789999998743211 11122
Q ss_pred ----EEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCC
Q 009708 409 ----KVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSI 468 (528)
Q Consensus 409 ----~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~ 468 (528)
.|++ .|++..-+| .++. ..++......|.||.+|++|..+-
T Consensus 149 ~rPVavll------~~vLh~v~D------~~dp-------~~iv~~l~d~lapGS~L~ish~t~ 193 (267)
T PF04672_consen 149 DRPVAVLL------VAVLHFVPD------DDDP-------AGIVARLRDALAPGSYLAISHATD 193 (267)
T ss_dssp TS--EEEE------CT-GGGS-C------GCTH-------HHHHHHHHCCS-TT-EEEEEEEB-
T ss_pred CCCeeeee------eeeeccCCC------ccCH-------HHHHHHHHHhCCCCceEEEEecCC
Confidence 2332 233333332 1222 345888999999999999887664
No 316
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=90.89 E-value=0.51 Score=46.62 Aligned_cols=70 Identities=24% Similarity=0.240 Sum_probs=53.8
Q ss_pred CCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEE
Q 009708 333 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 412 (528)
Q Consensus 333 ~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~ 412 (528)
..+|..-.|+||.|||.|-++.++ .-.|++||.-+-+- ++-. .+.|+.+..|.+.+.+. ..+.|-.+|
T Consensus 209 L~~~M~avDLGAcPGGWTyqLVkr---~m~V~aVDng~ma~-----sL~d---tg~v~h~r~DGfk~~P~-r~~idWmVC 276 (358)
T COG2933 209 LAPGMWAVDLGACPGGWTYQLVKR---NMRVYAVDNGPMAQ-----SLMD---TGQVTHLREDGFKFRPT-RSNIDWMVC 276 (358)
T ss_pred hcCCceeeecccCCCccchhhhhc---ceEEEEeccchhhh-----hhhc---ccceeeeeccCcccccC-CCCCceEEe
Confidence 457889999999999999999875 57999999765432 2222 23578889999998763 467899998
Q ss_pred cC
Q 009708 413 DA 414 (528)
Q Consensus 413 D~ 414 (528)
|-
T Consensus 277 Dm 278 (358)
T COG2933 277 DM 278 (358)
T ss_pred eh
Confidence 83
No 317
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=90.83 E-value=5.2 Score=39.42 Aligned_cols=119 Identities=13% Similarity=0.118 Sum_probs=75.8
Q ss_pred HhcCCCCCCeEEEeCCccchHHHHHHHHcCCC---cEEEEEcCChHHHHHHHHHHHHc--CCCccEEEEcCccccccccC
Q 009708 329 AVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQ---GLVYAIDINKGRLRILNETAKLH--QVNSVIRTIHADLRTFADNS 403 (528)
Q Consensus 329 ~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~---~~v~avD~s~~~l~~~~~n~~~~--g~~~~i~~~~~D~~~~~~~~ 403 (528)
++.....+...+|+|+|+-.||..+...+... .+.+.+|+|...++...+.+.+- +++ +.-+++|........
T Consensus 72 Eia~~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~--v~~l~~~~~~~La~~ 149 (321)
T COG4301 72 EIASITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLE--VNALCGDYELALAEL 149 (321)
T ss_pred HHHHhhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCe--EeehhhhHHHHHhcc
Confidence 33444457899999999999999887766542 36899999999887655544432 333 566777775433222
Q ss_pred CCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 404 TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 404 ~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
++.--++++ -+-|..|- .++.+... +|.+....+.||-.+..-+--
T Consensus 150 ~~~~~Rl~~-flGStlGN----------~tp~e~~~-------Fl~~l~~a~~pGd~~LlGvDl 195 (321)
T COG4301 150 PRGGRRLFV-FLGSTLGN----------LTPGECAV-------FLTQLRGALRPGDYFLLGVDL 195 (321)
T ss_pred cCCCeEEEE-EecccccC----------CChHHHHH-------HHHHHHhcCCCcceEEEeccc
Confidence 223334443 23344454 33344333 588888899999988866543
No 318
>PRK06914 short chain dehydrogenase; Provisional
Probab=90.52 E-value=4.7 Score=39.98 Aligned_cols=82 Identities=17% Similarity=0.065 Sum_probs=53.7
Q ss_pred CCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc--------CCCC
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN--------STVK 406 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~--------~~~~ 406 (528)
+.+||=.|+ +|+.+..++..+- .+.+|++++.++..++.........+....+.++.+|+.+.... ..++
T Consensus 3 ~k~~lItGa-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~ 81 (280)
T PRK06914 3 KKIAIVTGA-SSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQLVLKEIGR 81 (280)
T ss_pred CCEEEEECC-CchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHHHHHHhcCC
Confidence 445666664 5566777665443 34589999999888877766666555544588888998764321 0246
Q ss_pred CCEEEEcCCCCC
Q 009708 407 CDKVLLDAPCSG 418 (528)
Q Consensus 407 fD~Vl~D~Pcsg 418 (528)
.|.|+..+....
T Consensus 82 id~vv~~ag~~~ 93 (280)
T PRK06914 82 IDLLVNNAGYAN 93 (280)
T ss_pred eeEEEECCcccc
Confidence 799988765443
No 319
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=90.41 E-value=2.8 Score=43.11 Aligned_cols=93 Identities=18% Similarity=0.091 Sum_probs=58.0
Q ss_pred hcCCCCCCeEEEeCCccch-HHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCC
Q 009708 330 VVDPQPGQSIVDCCAAPGG-KTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCD 408 (528)
Q Consensus 330 ~l~~~~g~~VLDl~aG~G~-kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD 408 (528)
...+++|++||=.|+|+-+ .+.++|+.+ +.+|++++.++++++.+ +.+|.+..+ .. .+. ..+.+|
T Consensus 160 ~~~~~~g~~VlV~G~g~iG~~a~~~a~~~--G~~vi~~~~~~~~~~~a----~~~Ga~~vi---~~--~~~---~~~~~d 225 (329)
T TIGR02822 160 RASLPPGGRLGLYGFGGSAHLTAQVALAQ--GATVHVMTRGAAARRLA----LALGAASAG---GA--YDT---PPEPLD 225 (329)
T ss_pred hcCCCCCCEEEEEcCCHHHHHHHHHHHHC--CCeEEEEeCChHHHHHH----HHhCCceec---cc--ccc---Ccccce
Confidence 3567889999998875433 445566653 34799999999987655 457776422 11 111 113578
Q ss_pred EEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 409 KVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 409 ~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
.++. |++.| ..+..+++.|++||+++..
T Consensus 226 ~~i~---~~~~~-------------------------~~~~~~~~~l~~~G~~v~~ 253 (329)
T TIGR02822 226 AAIL---FAPAG-------------------------GLVPPALEALDRGGVLAVA 253 (329)
T ss_pred EEEE---CCCcH-------------------------HHHHHHHHhhCCCcEEEEE
Confidence 7654 22211 1377788999999998753
No 320
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=90.28 E-value=4.2 Score=39.84 Aligned_cols=80 Identities=18% Similarity=0.081 Sum_probs=55.3
Q ss_pred CCCeEEEeCCccchHHHHHHHHcCC-CcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLSG-QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 404 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~~-~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~ 404 (528)
.+.+||=.| |+|+.+.++++.+-. +.+|+.++.+...++.+...+...+. .+.++.+|+.+.... ..
T Consensus 11 ~~k~ilItG-a~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~--~~~~~~~Dl~d~~~i~~~~~~~~~~~ 87 (259)
T PRK08213 11 SGKTALVTG-GSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALGI--DALWIAADVADEADIERLAEETLERF 87 (259)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCC--eEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 366788888 567888888876642 35899999998888777766665443 367788888764211 01
Q ss_pred CCCCEEEEcCCCC
Q 009708 405 VKCDKVLLDAPCS 417 (528)
Q Consensus 405 ~~fD~Vl~D~Pcs 417 (528)
..+|.|+..+..+
T Consensus 88 ~~id~vi~~ag~~ 100 (259)
T PRK08213 88 GHVDILVNNAGAT 100 (259)
T ss_pred CCCCEEEECCCCC
Confidence 4689999876553
No 321
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=90.22 E-value=2.1 Score=44.32 Aligned_cols=50 Identities=22% Similarity=0.355 Sum_probs=36.7
Q ss_pred cCCCCCCeEEEeCCcc-chHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCC
Q 009708 331 VDPQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVN 386 (528)
Q Consensus 331 l~~~~g~~VLDl~aG~-G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~ 386 (528)
..+++|++||=.|||+ |..++++|+.++ .+|+++|.++++++.+++ +|.+
T Consensus 162 ~~~~~g~~VlV~G~G~vG~~a~~~a~~~G--~~vi~~~~~~~~~~~~~~----~Ga~ 212 (349)
T TIGR03201 162 AGLKKGDLVIVIGAGGVGGYMVQTAKAMG--AAVVAIDIDPEKLEMMKG----FGAD 212 (349)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEcCCHHHHHHHHH----hCCc
Confidence 4567899999999865 555566676643 479999999999877643 4654
No 322
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=90.12 E-value=0.55 Score=47.01 Aligned_cols=98 Identities=20% Similarity=0.182 Sum_probs=64.3
Q ss_pred CCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEcC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDA 414 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D~ 414 (528)
.|..++|.|||.|-.+. ..+...++++|++...+..++ +.|.+ .+..+|+.+.+.. ...||.++.=+
T Consensus 45 ~gsv~~d~gCGngky~~-----~~p~~~~ig~D~c~~l~~~ak----~~~~~---~~~~ad~l~~p~~-~~s~d~~lsia 111 (293)
T KOG1331|consen 45 TGSVGLDVGCGNGKYLG-----VNPLCLIIGCDLCTGLLGGAK----RSGGD---NVCRADALKLPFR-EESFDAALSIA 111 (293)
T ss_pred CcceeeecccCCcccCc-----CCCcceeeecchhhhhccccc----cCCCc---eeehhhhhcCCCC-CCccccchhhh
Confidence 48899999999986542 124557999999888776654 23322 4678899887754 36799877421
Q ss_pred CCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCE-EEEE
Q 009708 415 PCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGV-LVYS 464 (528)
Q Consensus 415 Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~-Lvys 464 (528)
-- .|.-+... -...+++..+.|+|||. +||+
T Consensus 112 vi------------hhlsT~~R-------R~~~l~e~~r~lrpgg~~lvyv 143 (293)
T KOG1331|consen 112 VI------------HHLSTRER-------RERALEELLRVLRPGGNALVYV 143 (293)
T ss_pred hh------------hhhhhHHH-------HHHHHHHHHHHhcCCCceEEEE
Confidence 11 11111122 23468899999999996 5555
No 323
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=90.09 E-value=0.21 Score=44.10 Aligned_cols=78 Identities=23% Similarity=0.375 Sum_probs=51.3
Q ss_pred EEEEcCccccccccCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCC
Q 009708 389 IRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSI 468 (528)
Q Consensus 389 i~~~~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~ 468 (528)
+++..+|+.+........||+|++|+-. -.++|+ .|. .++++...+++++||+++-.||+
T Consensus 33 L~L~~gDa~~~l~~l~~~~Da~ylDgFs-----P~~nPe-lWs-------------~e~~~~l~~~~~~~~~l~Tys~a- 92 (124)
T PF05430_consen 33 LTLWFGDAREMLPQLDARFDAWYLDGFS-----PAKNPE-LWS-------------EELFKKLARLSKPGGTLATYSSA- 92 (124)
T ss_dssp EEEEES-HHHHHHHB-T-EEEEEE-SS------TTTSGG-GSS-------------HHHHHHHHHHEEEEEEEEES--B-
T ss_pred EEEEEcHHHHHHHhCcccCCEEEecCCC-----CcCCcc-cCC-------------HHHHHHHHHHhCCCcEEEEeech-
Confidence 6778889987666555789999999643 357787 343 44688889999999998854442
Q ss_pred CchhhHHHHHHHHhhCCCceEecCC
Q 009708 469 DPEENEERVEAFLLRHPEFSIDPAD 493 (528)
Q Consensus 469 ~~~Ene~~v~~~l~~~~~~~~~~~~ 493 (528)
..|..-|... +|.+...+
T Consensus 93 ------~~Vr~~L~~a-GF~v~~~~ 110 (124)
T PF05430_consen 93 ------GAVRRALQQA-GFEVEKVP 110 (124)
T ss_dssp ------HHHHHHHHHC-TEEEEEEE
T ss_pred ------HHHHHHHHHc-CCEEEEcC
Confidence 2466667664 68877654
No 324
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=90.07 E-value=1.8 Score=44.92 Aligned_cols=95 Identities=14% Similarity=0.126 Sum_probs=56.6
Q ss_pred CCCCCeEEEeCCcc-chHHHHHHHHcCCCcEEEEEcC---ChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCC
Q 009708 333 PQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDI---NKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCD 408 (528)
Q Consensus 333 ~~~g~~VLDl~aG~-G~kt~~la~~~~~~~~v~avD~---s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD 408 (528)
.++|++||=.|+|+ |..+.++|+.++ .+|++++. ++.+++.+ +.+|.+. +.....|... . .....||
T Consensus 170 ~~~g~~vlI~G~G~vG~~a~q~ak~~G--~~vi~~~~~~~~~~~~~~~----~~~Ga~~-v~~~~~~~~~-~-~~~~~~d 240 (355)
T cd08230 170 TWNPRRALVLGAGPIGLLAALLLRLRG--FEVYVLNRRDPPDPKADIV----EELGATY-VNSSKTPVAE-V-KLVGEFD 240 (355)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEecCCCCHHHHHHH----HHcCCEE-ecCCccchhh-h-hhcCCCC
Confidence 45788999888754 345566666643 47999987 67777655 4466542 2111111111 0 1124689
Q ss_pred EEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 409 KVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 409 ~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
.||- |+|.. ..+..+.+.|++||+++..
T Consensus 241 ~vid---~~g~~-------------------------~~~~~~~~~l~~~G~~v~~ 268 (355)
T cd08230 241 LIIE---ATGVP-------------------------PLAFEALPALAPNGVVILF 268 (355)
T ss_pred EEEE---CcCCH-------------------------HHHHHHHHHccCCcEEEEE
Confidence 8774 43311 1367788999999998754
No 325
>PRK12939 short chain dehydrogenase; Provisional
Probab=89.94 E-value=3.7 Score=39.74 Aligned_cols=78 Identities=21% Similarity=0.074 Sum_probs=51.8
Q ss_pred CCCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 404 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~ 404 (528)
.+.+||=.| |+|+.+.+++..+. .+.+|++++.++..+......++..+. .+.++.+|+.+.... ..
T Consensus 6 ~~~~vlItG-a~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~~~ 82 (250)
T PRK12939 6 AGKRALVTG-AARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAGG--RAHAIAADLADPASVQRFFDAAAAAL 82 (250)
T ss_pred CCCEEEEeC-CCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCC--cEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 356777555 46788888877653 245789999998887776666554442 378888898764311 01
Q ss_pred CCCCEEEEcCC
Q 009708 405 VKCDKVLLDAP 415 (528)
Q Consensus 405 ~~fD~Vl~D~P 415 (528)
+++|.|+..+-
T Consensus 83 ~~id~vi~~ag 93 (250)
T PRK12939 83 GGLDGLVNNAG 93 (250)
T ss_pred CCCCEEEECCC
Confidence 46899987543
No 326
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=89.88 E-value=2.1 Score=44.83 Aligned_cols=102 Identities=20% Similarity=0.226 Sum_probs=59.7
Q ss_pred hcCCCCCCeEEEeCCcc-chHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccc-ccccCCCCC
Q 009708 330 VVDPQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT-FADNSTVKC 407 (528)
Q Consensus 330 ~l~~~~g~~VLDl~aG~-G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~-~~~~~~~~f 407 (528)
...+++|++||=.|+|+ |..+.++|+.+ +..+|+++|.++.+++.++ .+|.+..+.....|... +.....+.+
T Consensus 186 ~~~i~~g~~VlV~G~G~vG~~a~~lak~~-G~~~Vi~~~~~~~r~~~a~----~~Ga~~~i~~~~~~~~~~i~~~~~~g~ 260 (371)
T cd08281 186 TAGVRPGQSVAVVGLGGVGLSALLGAVAA-GASQVVAVDLNEDKLALAR----ELGATATVNAGDPNAVEQVRELTGGGV 260 (371)
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCcEEEEcCCHHHHHHHH----HcCCceEeCCCchhHHHHHHHHhCCCC
Confidence 34577899988888653 33445555553 2336999999999988765 35765322211112111 111112368
Q ss_pred CEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 408 DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 408 D~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
|+|+- |+|.. ..+..+++.+++||+++..
T Consensus 261 d~vid---~~G~~-------------------------~~~~~~~~~l~~~G~iv~~ 289 (371)
T cd08281 261 DYAFE---MAGSV-------------------------PALETAYEITRRGGTTVTA 289 (371)
T ss_pred CEEEE---CCCCh-------------------------HHHHHHHHHHhcCCEEEEE
Confidence 98873 44321 1266778889999998854
No 327
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=89.61 E-value=2.9 Score=42.56 Aligned_cols=39 Identities=13% Similarity=-0.143 Sum_probs=29.8
Q ss_pred CCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHH
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILN 377 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~ 377 (528)
.-+||-.|||.|..+..+|.. +-.+-|.|.|--|+-...
T Consensus 151 ki~iLvPGaGlGRLa~dla~~---G~~~qGNEfSy~Mli~S~ 189 (369)
T KOG2798|consen 151 KIRILVPGAGLGRLAYDLACL---GFKCQGNEFSYFMLICSS 189 (369)
T ss_pred CceEEecCCCchhHHHHHHHh---cccccccHHHHHHHHHHH
Confidence 347999999999999999986 345667788777764433
No 328
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=89.61 E-value=2.7 Score=43.31 Aligned_cols=103 Identities=17% Similarity=0.237 Sum_probs=59.6
Q ss_pred hcCCCCCCeEEEeCCcc-chHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc-CCCCC
Q 009708 330 VVDPQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVKC 407 (528)
Q Consensus 330 ~l~~~~g~~VLDl~aG~-G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~-~~~~f 407 (528)
....++|++||=.|+|+ |..++++|+.++ ...|++++.++.+++.++ ..|.+..+.....+....... ....+
T Consensus 155 ~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G-~~~v~~~~~~~~~~~~~~----~~Ga~~~i~~~~~~~~~~~~~~~~~~~ 229 (347)
T PRK10309 155 LAQGCEGKNVIIIGAGTIGLLAIQCAVALG-AKSVTAIDINSEKLALAK----SLGAMQTFNSREMSAPQIQSVLRELRF 229 (347)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEECCCHHHHHHHH----HcCCceEecCcccCHHHHHHHhcCCCC
Confidence 34567888988887654 224455666543 335899999999887653 456543111111111111111 12458
Q ss_pred CEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 408 DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 408 D~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
|.+++| |+|.. ..+..+.++|++||+++..
T Consensus 230 d~~v~d--~~G~~-------------------------~~~~~~~~~l~~~G~iv~~ 259 (347)
T PRK10309 230 DQLILE--TAGVP-------------------------QTVELAIEIAGPRAQLALV 259 (347)
T ss_pred CeEEEE--CCCCH-------------------------HHHHHHHHHhhcCCEEEEE
Confidence 866666 54421 1367788999999998864
No 329
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=89.55 E-value=5.6 Score=39.23 Aligned_cols=121 Identities=13% Similarity=0.139 Sum_probs=76.8
Q ss_pred CCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccC---CCCCCEE
Q 009708 334 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS---TVKCDKV 410 (528)
Q Consensus 334 ~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~---~~~fD~V 410 (528)
.+|.. |...+|+=-.+.++. ..+-++.++|..|+=...+++|+. +.. ++.+..+|........ .++=-+|
T Consensus 88 N~~~~-l~~YpGSP~lA~~ll---R~qDRl~l~ELHp~D~~~L~~~f~--~d~-~vrv~~~DG~~~l~a~LPP~erRglV 160 (279)
T COG2961 88 NPGGG-LRYYPGSPLLARQLL---REQDRLVLTELHPSDAPLLRNNFA--GDR-RVRVLRGDGFLALKAHLPPKERRGLV 160 (279)
T ss_pred CCCCC-cccCCCCHHHHHHHc---chhceeeeeecCccHHHHHHHHhC--CCc-ceEEEecCcHHHHhhhCCCCCcceEE
Confidence 34444 777777755554444 446799999999999999999987 334 4889999987643221 2445789
Q ss_pred EEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchhhHHHHHHHHhhCC
Q 009708 411 LLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHP 485 (528)
Q Consensus 411 l~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~Ene~~v~~~l~~~~ 485 (528)
++|||+- ...+...+.+ -|+.+++-.. +|+. |-+.|.-.-+.+..|++...
T Consensus 161 LIDPPfE---------------~~~eY~rvv~----~l~~~~kRf~-~g~y----aiWYPik~r~~~~~f~~~L~ 211 (279)
T COG2961 161 LIDPPFE---------------LKDEYQRVVE----ALAEAYKRFA-TGTY----AIWYPIKDRRQIRRFLRALE 211 (279)
T ss_pred EeCCCcc---------------cccHHHHHHH----HHHHHHHhhc-CceE----EEEEeecchHHHHHHHHHHh
Confidence 9999992 1123333322 2444444433 4543 33566666677888877643
No 330
>PRK07063 short chain dehydrogenase; Provisional
Probab=89.51 E-value=6.7 Score=38.40 Aligned_cols=79 Identities=15% Similarity=0.090 Sum_probs=53.3
Q ss_pred CCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CCC
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 405 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~~ 405 (528)
+.+||=.|++ |+.+.+++..+- .+.+|+.++.++..++.+...+...+...++.++..|+.+.... ..+
T Consensus 7 ~k~vlVtGas-~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 85 (260)
T PRK07063 7 GKVALVTGAA-QGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEAFG 85 (260)
T ss_pred CCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 5678888865 667777776553 34589999999988887777766532233477888888764211 124
Q ss_pred CCCEEEEcCC
Q 009708 406 KCDKVLLDAP 415 (528)
Q Consensus 406 ~fD~Vl~D~P 415 (528)
.+|.++.++-
T Consensus 86 ~id~li~~ag 95 (260)
T PRK07063 86 PLDVLVNNAG 95 (260)
T ss_pred CCcEEEECCC
Confidence 6899988654
No 331
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=89.49 E-value=2.4 Score=44.07 Aligned_cols=100 Identities=22% Similarity=0.181 Sum_probs=61.7
Q ss_pred hcCCCCCCeEEEeCC--ccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcC-cccccc-ccCCC
Q 009708 330 VVDPQPGQSIVDCCA--APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHA-DLRTFA-DNSTV 405 (528)
Q Consensus 330 ~l~~~~g~~VLDl~a--G~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~-D~~~~~-~~~~~ 405 (528)
...+++|++||=.|+ |.|..++++|+.+ +.+|++++.++.+.+.+++ .+|.+..+..... |..... .....
T Consensus 153 ~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~--G~~Vi~~~~~~~k~~~~~~---~lGa~~vi~~~~~~~~~~~i~~~~~~ 227 (348)
T PLN03154 153 VCSPKKGDSVFVSAASGAVGQLVGQLAKLH--GCYVVGSAGSSQKVDLLKN---KLGFDEAFNYKEEPDLDAALKRYFPE 227 (348)
T ss_pred hcCCCCCCEEEEecCccHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHH---hcCCCEEEECCCcccHHHHHHHHCCC
Confidence 345788999988887 3566777888875 3579999999888766542 3576542221111 222111 11123
Q ss_pred CCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEE
Q 009708 406 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463 (528)
Q Consensus 406 ~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvy 463 (528)
.+|.|+ | |.|.. .+..+++.|++||+++.
T Consensus 228 gvD~v~-d--~vG~~--------------------------~~~~~~~~l~~~G~iv~ 256 (348)
T PLN03154 228 GIDIYF-D--NVGGD--------------------------MLDAALLNMKIHGRIAV 256 (348)
T ss_pred CcEEEE-E--CCCHH--------------------------HHHHHHHHhccCCEEEE
Confidence 589887 3 43311 26677888999999884
No 332
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=89.47 E-value=0.69 Score=49.61 Aligned_cols=130 Identities=13% Similarity=0.170 Sum_probs=85.0
Q ss_pred CCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc------CCCCCCE
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN------STVKCDK 409 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~------~~~~fD~ 409 (528)
+..+|=+|-|.|+....+-..++ ...++||+++|.+++.+..++....-. +..+...|..++... ....||+
T Consensus 296 ~~~~lvvg~ggG~l~sfl~~~~p-~~~i~~ve~dP~~l~va~q~f~f~q~~-r~~V~i~dGl~~~~~~~k~~~~~~~~dv 373 (482)
T KOG2352|consen 296 GGKQLVVGLGGGGLPSFLHMSLP-KFQITAVEIDPEMLEVATQYFGFMQSD-RNKVHIADGLDFLQRTAKSQQEDICPDV 373 (482)
T ss_pred cCcEEEEecCCCccccceeeecC-ccceeEEEEChhHhhccHhhhchhhhh-hhhhhHhhchHHHHHHhhccccccCCcE
Confidence 44678888888998887766544 578999999999999999988765433 345566676655322 2457999
Q ss_pred EEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchhhHHHHHHH
Q 009708 410 VLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAF 480 (528)
Q Consensus 410 Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~Ene~~v~~~ 480 (528)
++.|.-.+-.+-+.--| +..+ -..+|..+...|.|-|.+++.-.+-...-+.++...+
T Consensus 374 l~~dvds~d~~g~~~pp-------~~fv------a~~~l~~~k~~l~p~g~f~inlv~r~~~~~~~~~~~l 431 (482)
T KOG2352|consen 374 LMVDVDSKDSHGMQCPP-------PAFV------AQVALQPVKMILPPRGMFIINLVTRNSSFKDEVLMNL 431 (482)
T ss_pred EEEECCCCCcccCcCCc-------hHHH------HHHHHHHHhhccCccceEEEEEecCCcchhHHHHHhh
Confidence 99986543222221111 1122 2346888899999999887655544444455554433
No 333
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=89.19 E-value=5.2 Score=39.40 Aligned_cols=78 Identities=12% Similarity=-0.043 Sum_probs=49.7
Q ss_pred CCCeEEEeCCccc-hHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------C
Q 009708 335 PGQSIVDCCAAPG-GKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------S 403 (528)
Q Consensus 335 ~g~~VLDl~aG~G-~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~ 403 (528)
.|.++|=.|+++| |.+..++..+- .+.+|+.++.+....+.+++..+..+ . +.++..|+.+.... .
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~--~-~~~~~~D~~~~~~v~~~~~~~~~~ 85 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEELD--A-PIFLPLDVREPGQLEAVFARIAEE 85 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhhc--c-ceEEecCcCCHHHHHHHHHHHHHH
Confidence 3678999999884 88887776653 34578888888655444444433332 2 34677787764211 1
Q ss_pred CCCCCEEEEcCC
Q 009708 404 TVKCDKVLLDAP 415 (528)
Q Consensus 404 ~~~fD~Vl~D~P 415 (528)
.+..|.++.++-
T Consensus 86 ~g~ld~lv~nAg 97 (258)
T PRK07533 86 WGRLDFLLHSIA 97 (258)
T ss_pred cCCCCEEEEcCc
Confidence 256899998764
No 334
>PRK06940 short chain dehydrogenase; Provisional
Probab=89.18 E-value=5.2 Score=39.92 Aligned_cols=76 Identities=17% Similarity=0.113 Sum_probs=52.0
Q ss_pred CeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc--------CCCCCC
Q 009708 337 QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN--------STVKCD 408 (528)
Q Consensus 337 ~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~--------~~~~fD 408 (528)
..+|=.|+ |+.+.++++.+..+.+|+.+|.++..++.+.+.++..+. .+.++..|+.+.... ..+.+|
T Consensus 3 k~~lItGa--~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~~--~~~~~~~Dv~d~~~i~~~~~~~~~~g~id 78 (275)
T PRK06940 3 EVVVVIGA--GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAGF--DVSTQEVDVSSRESVKALAATAQTLGPVT 78 (275)
T ss_pred CEEEEECC--ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCC--eEEEEEeecCCHHHHHHHHHHHHhcCCCC
Confidence 34555564 589999998886667899999998887766666655443 367788888764211 124689
Q ss_pred EEEEcCCC
Q 009708 409 KVLLDAPC 416 (528)
Q Consensus 409 ~Vl~D~Pc 416 (528)
.++.++-.
T Consensus 79 ~li~nAG~ 86 (275)
T PRK06940 79 GLVHTAGV 86 (275)
T ss_pred EEEECCCc
Confidence 99887643
No 335
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=89.10 E-value=3.6 Score=41.16 Aligned_cols=99 Identities=18% Similarity=0.128 Sum_probs=57.1
Q ss_pred cCCCCCCeEEEeCCcc-chHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccc-cccc-CCCCC
Q 009708 331 VDPQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT-FADN-STVKC 407 (528)
Q Consensus 331 l~~~~g~~VLDl~aG~-G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~-~~~~-~~~~f 407 (528)
....+|++||=.|+|+ |..++++|+.+ +...|+++|.++.+++.+++ +|.+..+.. .+... .... ....+
T Consensus 116 ~~~~~g~~VlV~G~G~vG~~~~~~ak~~-G~~~Vi~~~~~~~r~~~a~~----~Ga~~~i~~--~~~~~~~~~~~~~~g~ 188 (280)
T TIGR03366 116 AGDLKGRRVLVVGAGMLGLTAAAAAAAA-GAARVVAADPSPDRRELALS----FGATALAEP--EVLAERQGGLQNGRGV 188 (280)
T ss_pred ccCCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHH----cCCcEecCc--hhhHHHHHHHhCCCCC
Confidence 4456899999887643 22334555543 23359999999998876654 565431111 11101 1100 12358
Q ss_pred CEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 408 DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 408 D~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
|+|+- |+|.. ..+..+.+.++++|+++..
T Consensus 189 d~vid---~~G~~-------------------------~~~~~~~~~l~~~G~iv~~ 217 (280)
T TIGR03366 189 DVALE---FSGAT-------------------------AAVRACLESLDVGGTAVLA 217 (280)
T ss_pred CEEEE---CCCCh-------------------------HHHHHHHHHhcCCCEEEEe
Confidence 98763 43311 1367788899999998854
No 336
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=88.78 E-value=1.5 Score=41.53 Aligned_cols=120 Identities=21% Similarity=0.341 Sum_probs=60.9
Q ss_pred ccchHHHHHHHHcCC-CcEEEEEcCChHHHHHHHH------------HHHHcCCCccEEEEcCccccccccCCCCCCEEE
Q 009708 345 APGGKTLYMASCLSG-QGLVYAIDINKGRLRILNE------------TAKLHQVNSVIRTIHADLRTFADNSTVKCDKVL 411 (528)
Q Consensus 345 G~G~kt~~la~~~~~-~~~v~avD~s~~~l~~~~~------------n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl 411 (528)
|.|..++-+|..+.. +-+|+++|+++++++.+++ .+++..-.++..+ ..|..... ...|.++
T Consensus 7 GlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~-t~~~~~ai----~~adv~~ 81 (185)
T PF03721_consen 7 GLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRA-TTDIEEAI----KDADVVF 81 (185)
T ss_dssp --STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEE-ESEHHHHH----HH-SEEE
T ss_pred CCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchh-hhhhhhhh----hccceEE
Confidence 445544444433322 4599999999999987653 1111110112222 22332211 2478888
Q ss_pred EcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchhhHHHHHHHHhhCC
Q 009708 412 LDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHP 485 (528)
Q Consensus 412 ~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~Ene~~v~~~l~~~~ 485 (528)
+-.|.-... ...+|..+ + ...++.....+++ |.+|..-+|+.+.-.++.+...+++..
T Consensus 82 I~VpTP~~~--~~~~Dls~------v-------~~a~~~i~~~l~~-~~lvV~~STvppGtt~~~~~~ile~~~ 139 (185)
T PF03721_consen 82 ICVPTPSDE--DGSPDLSY------V-------ESAIESIAPVLRP-GDLVVIESTVPPGTTEELLKPILEKRS 139 (185)
T ss_dssp E----EBET--TTSBETHH------H-------HHHHHHHHHHHCS-CEEEEESSSSSTTHHHHHHHHHHHHHC
T ss_pred EecCCCccc--cCCccHHH------H-------HHHHHHHHHHHhh-cceEEEccEEEEeeehHhhhhhhhhhc
Confidence 876652111 23333322 2 2236666777787 556656678888888888888888654
No 337
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=88.68 E-value=6.2 Score=38.90 Aligned_cols=127 Identities=13% Similarity=0.001 Sum_probs=66.3
Q ss_pred CCCeEEEeCCcc-chHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------C
Q 009708 335 PGQSIVDCCAAP-GGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------S 403 (528)
Q Consensus 335 ~g~~VLDl~aG~-G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~ 403 (528)
.|..+|=.|+++ +|.+..+++.+- .+.+|+.++.+....+.+++..+... ...+.++..|+.+.... .
T Consensus 6 ~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 84 (257)
T PRK08594 6 EGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLE-GQESLLLPCDVTSDEEITACFETIKEE 84 (257)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcC-CCceEEEecCCCCHHHHHHHHHHHHHh
Confidence 367899999884 888888887654 34578877654322223333333322 12366788888764211 1
Q ss_pred CCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHH----HHHHHHHHHHHhccCcCCCEEEEEc
Q 009708 404 TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEEL----KILQDELLDAASLLVKPGGVLVYST 465 (528)
Q Consensus 404 ~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l----~~~q~~lL~~a~~~LkpGG~LvysT 465 (528)
.+++|.++.++-....+... .+ .+..+.++.... ......+.+.+...++++|.+|..+
T Consensus 85 ~g~ld~lv~nag~~~~~~~~-~~--~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~is 147 (257)
T PRK08594 85 VGVIHGVAHCIAFANKEDLR-GE--FLETSRDGFLLAQNISAYSLTAVAREAKKLMTEGGSIVTLT 147 (257)
T ss_pred CCCccEEEECcccCCCCcCC-Cc--cccCCHHHHHHHHhhhHHHHHHHHHHHHHhcccCceEEEEc
Confidence 25789888765332111000 00 011222222221 1112234556667777788877543
No 338
>PRK08339 short chain dehydrogenase; Provisional
Probab=88.39 E-value=9.1 Score=37.81 Aligned_cols=79 Identities=20% Similarity=0.179 Sum_probs=50.8
Q ss_pred CCCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc--------CCC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN--------STV 405 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~--------~~~ 405 (528)
.|.++|=.|++ |+.+..+++.+- .+.+|+.++.++..++.+.+.++... ...+.++..|+.+.... ..+
T Consensus 7 ~~k~~lItGas-~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~i~~~~~~~~~~g 84 (263)
T PRK08339 7 SGKLAFTTASS-KGIGFGVARVLARAGADVILLSRNEENLKKAREKIKSES-NVDVSYIVADLTKREDLERTVKELKNIG 84 (263)
T ss_pred CCCEEEEeCCC-CcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCHHHHHHHHHHHHhhC
Confidence 36677777765 456666666543 34689999999988877776665432 12377888888764211 024
Q ss_pred CCCEEEEcCC
Q 009708 406 KCDKVLLDAP 415 (528)
Q Consensus 406 ~fD~Vl~D~P 415 (528)
..|.++.++-
T Consensus 85 ~iD~lv~nag 94 (263)
T PRK08339 85 EPDIFFFSTG 94 (263)
T ss_pred CCcEEEECCC
Confidence 6898887643
No 339
>PRK07326 short chain dehydrogenase; Provisional
Probab=88.35 E-value=5.6 Score=38.20 Aligned_cols=75 Identities=17% Similarity=0.093 Sum_probs=50.1
Q ss_pred CCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CCC
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 405 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~~ 405 (528)
+..||=.|+ +|+.+..++..+. .+.+|++++.++.....+.+.+... ..+.++.+|+.+.... ...
T Consensus 6 ~~~ilItGa-tg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (237)
T PRK07326 6 GKVALITGG-SKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNK---GNVLGLAADVRDEADVQRAVDAIVAAFG 81 (237)
T ss_pred CCEEEEECC-CCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhcc---CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 567887774 7788888877553 2458999999988877666555432 2477888887653211 013
Q ss_pred CCCEEEEcC
Q 009708 406 KCDKVLLDA 414 (528)
Q Consensus 406 ~fD~Vl~D~ 414 (528)
.+|.|+..+
T Consensus 82 ~~d~vi~~a 90 (237)
T PRK07326 82 GLDVLIANA 90 (237)
T ss_pred CCCEEEECC
Confidence 689888754
No 340
>PF07669 Eco57I: Eco57I restriction-modification methylase; InterPro: IPR011639 This entry contains restriction modification methylases, which in the case of endonuclease Eco57I is found adjacent to the DNA cleavage domain, which recognises asymmetric DNA sequence 5'-CTGAAG [, ]. The methylase causes specific methylation on A-5 on one strand, the other strand being methylated by the Eco57IB methylase []. ; GO: 0003677 DNA binding, 0003824 catalytic activity, 0006304 DNA modification
Probab=88.35 E-value=1.1 Score=38.24 Aligned_cols=72 Identities=21% Similarity=0.277 Sum_probs=44.8
Q ss_pred CCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC-CC-chhhHHHHHHHHhh
Q 009708 406 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS-ID-PEENEERVEAFLLR 483 (528)
Q Consensus 406 ~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs-~~-~~Ene~~v~~~l~~ 483 (528)
+||+|+-|||+........... .......++.-+++.+.+++ +|.+.|.+-+ +. ..+.-..+..++..
T Consensus 2 kFD~VIGNPPY~~~~~~~~~~~--------~~~~~~dlY~~Fie~~~~ll--~G~~~~I~P~~~l~~~~~~~~lR~~l~~ 71 (106)
T PF07669_consen 2 KFDVVIGNPPYIKIKSLSKKKK--------KKKKKSDLYILFIEKSLNLL--NGYLSFITPNSFLKSGKYGKKLRKFLLN 71 (106)
T ss_pred CcCEEEECCCChhhccccchhh--------cccccCcHHHHHHHHHHHHh--CCeEEEEeChHHhCcCchHHHHHHHHhc
Confidence 6999999999954332111110 00114456667899999988 8998776654 44 45555666777765
Q ss_pred CCCc
Q 009708 484 HPEF 487 (528)
Q Consensus 484 ~~~~ 487 (528)
...+
T Consensus 72 ~~~i 75 (106)
T PF07669_consen 72 NTNI 75 (106)
T ss_pred CCCe
Confidence 5433
No 341
>PRK05867 short chain dehydrogenase; Provisional
Probab=88.30 E-value=6 Score=38.62 Aligned_cols=79 Identities=13% Similarity=0.037 Sum_probs=53.7
Q ss_pred CCCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 404 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~ 404 (528)
.|.++|=.|++ |+.+.+++..+- .+.+|+.++.++..++.+...++..+ +.+.++..|+.+.... ..
T Consensus 8 ~~k~vlVtGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (253)
T PRK05867 8 HGKRALITGAS-TGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSG--GKVVPVCCDVSQHQQVTSMLDQVTAEL 84 (253)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 36788888875 566766666553 34589999999988887777766655 2367788888764211 12
Q ss_pred CCCCEEEEcCCC
Q 009708 405 VKCDKVLLDAPC 416 (528)
Q Consensus 405 ~~fD~Vl~D~Pc 416 (528)
+..|.++.++..
T Consensus 85 g~id~lv~~ag~ 96 (253)
T PRK05867 85 GGIDIAVCNAGI 96 (253)
T ss_pred CCCCEEEECCCC
Confidence 478999887644
No 342
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=88.30 E-value=4.9 Score=44.11 Aligned_cols=48 Identities=17% Similarity=0.174 Sum_probs=37.1
Q ss_pred CCCCCeEEEeCCccch-HHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCC
Q 009708 333 PQPGQSIVDCCAAPGG-KTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVN 386 (528)
Q Consensus 333 ~~~g~~VLDl~aG~G~-kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~ 386 (528)
..++++|+=+|||+=| .++..|..++ ..|+++|.++.+++.+++ +|.+
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lG--A~V~a~D~~~~rle~aes----lGA~ 210 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSLG--AIVRAFDTRPEVAEQVES----MGAE 210 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH----cCCe
Confidence 4578999999999965 5556666654 479999999999987664 5654
No 343
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=88.16 E-value=3.7 Score=42.64 Aligned_cols=103 Identities=17% Similarity=0.162 Sum_probs=60.5
Q ss_pred hcCCCCCCeEEEeCCcc-chHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccc-ccc-CCCC
Q 009708 330 VVDPQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF-ADN-STVK 406 (528)
Q Consensus 330 ~l~~~~g~~VLDl~aG~-G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~-~~~-~~~~ 406 (528)
...+++|++||=.|+|+ |..++++|+.+ +..+|+++|.++.+++.++ .+|.+..+.....|.... ... ....
T Consensus 171 ~~~~~~g~~VlV~G~g~vG~~a~~~ak~~-G~~~Vi~~~~~~~~~~~~~----~~Ga~~~i~~~~~~~~~~i~~~~~~~g 245 (358)
T TIGR03451 171 TGGVKRGDSVAVIGCGGVGDAAIAGAALA-GASKIIAVDIDDRKLEWAR----EFGATHTVNSSGTDPVEAIRALTGGFG 245 (358)
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHH----HcCCceEEcCCCcCHHHHHHHHhCCCC
Confidence 34567899999887643 33445566653 2236999999999988774 456543222111122111 111 1235
Q ss_pred CCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEc
Q 009708 407 CDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465 (528)
Q Consensus 407 fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysT 465 (528)
+|+|+ | |+|.. ..+..++..+++||+++..-
T Consensus 246 ~d~vi-d--~~g~~-------------------------~~~~~~~~~~~~~G~iv~~G 276 (358)
T TIGR03451 246 ADVVI-D--AVGRP-------------------------ETYKQAFYARDLAGTVVLVG 276 (358)
T ss_pred CCEEE-E--CCCCH-------------------------HHHHHHHHHhccCCEEEEEC
Confidence 89876 3 54421 12566788899999988543
No 344
>PRK06949 short chain dehydrogenase; Provisional
Probab=87.92 E-value=6.7 Score=38.20 Aligned_cols=79 Identities=14% Similarity=0.119 Sum_probs=53.7
Q ss_pred CCCeEEEeCCccchHHHHHHHHcCC-CcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLSG-QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 404 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~~-~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~ 404 (528)
.+.+||=.| |+|+.+.+++..+.. +.+|++++.+++.++.+...+...+. .+.++..|+.+.... ..
T Consensus 8 ~~k~ilItG-asg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (258)
T PRK06949 8 EGKVALVTG-ASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEGG--AAHVVSLDVTDYQSIKAAVAHAETEA 84 (258)
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--cEEEEEecCCCHHHHHHHHHHHHHhc
Confidence 366788887 567788888776643 34799999999988877776654432 367788888653210 12
Q ss_pred CCCCEEEEcCCC
Q 009708 405 VKCDKVLLDAPC 416 (528)
Q Consensus 405 ~~fD~Vl~D~Pc 416 (528)
+.+|.|+..+..
T Consensus 85 ~~~d~li~~ag~ 96 (258)
T PRK06949 85 GTIDILVNNSGV 96 (258)
T ss_pred CCCCEEEECCCC
Confidence 468999886554
No 345
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=87.87 E-value=3.1 Score=42.46 Aligned_cols=100 Identities=14% Similarity=0.055 Sum_probs=60.6
Q ss_pred HhcCCCCCCeEEEeCC--ccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcC-ccccccc-cCC
Q 009708 329 AVVDPQPGQSIVDCCA--APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHA-DLRTFAD-NST 404 (528)
Q Consensus 329 ~~l~~~~g~~VLDl~a--G~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~-D~~~~~~-~~~ 404 (528)
....+++|++||=.|+ |.|..++++|+.+ +.+|++++.++++.+.++ .+|.+..+..... +...... ...
T Consensus 132 ~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~--G~~Vi~~~~s~~~~~~~~----~lGa~~vi~~~~~~~~~~~~~~~~~ 205 (325)
T TIGR02825 132 EICGVKGGETVMVNAAAGAVGSVVGQIAKLK--GCKVVGAAGSDEKVAYLK----KLGFDVAFNYKTVKSLEETLKKASP 205 (325)
T ss_pred HHhCCCCCCEEEEeCCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHH----HcCCCEEEeccccccHHHHHHHhCC
Confidence 3456788999988774 3555667777764 357999999988877664 4676532221111 1111111 112
Q ss_pred CCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEE
Q 009708 405 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463 (528)
Q Consensus 405 ~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvy 463 (528)
..+|+|+ | |.|.. .+..+++.|++||+++.
T Consensus 206 ~gvdvv~-d--~~G~~--------------------------~~~~~~~~l~~~G~iv~ 235 (325)
T TIGR02825 206 DGYDCYF-D--NVGGE--------------------------FSNTVIGQMKKFGRIAI 235 (325)
T ss_pred CCeEEEE-E--CCCHH--------------------------HHHHHHHHhCcCcEEEE
Confidence 4588876 4 43311 25677888999999884
No 346
>PRK09242 tropinone reductase; Provisional
Probab=87.78 E-value=11 Score=36.69 Aligned_cols=79 Identities=15% Similarity=0.053 Sum_probs=51.8
Q ss_pred CCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccc---------cCCC
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD---------NSTV 405 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~---------~~~~ 405 (528)
|.++|=.|++ |+.+..++..+. .+.+|+.++.+++.++.+...+....-...+.++.+|+.+... ...+
T Consensus 9 ~k~~lItGa~-~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 87 (257)
T PRK09242 9 GQTALITGAS-KGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDHWD 87 (257)
T ss_pred CCEEEEeCCC-chHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 5678888774 566666665543 3458999999988887777766554212347788888876321 1124
Q ss_pred CCCEEEEcCC
Q 009708 406 KCDKVLLDAP 415 (528)
Q Consensus 406 ~fD~Vl~D~P 415 (528)
.+|.|+..+-
T Consensus 88 ~id~li~~ag 97 (257)
T PRK09242 88 GLHILVNNAG 97 (257)
T ss_pred CCCEEEECCC
Confidence 6899887553
No 347
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=87.55 E-value=8.9 Score=37.41 Aligned_cols=79 Identities=14% Similarity=0.088 Sum_probs=54.7
Q ss_pred CCCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 404 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~ 404 (528)
.|.+||=.|+ +|+.+..+++.+- .+.+|+.++.++..++.+...++..|. .+.++..|+.+.... ..
T Consensus 9 ~~k~vlItGa-~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~ 85 (255)
T PRK07523 9 TGRRALVTGS-SQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQGL--SAHALAFDVTDHDAVRAAIDAFEAEI 85 (255)
T ss_pred CCCEEEEECC-cchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCc--eEEEEEccCCCHHHHHHHHHHHHHhc
Confidence 3668888875 6778888777553 345899999999888777777766553 367788888763211 12
Q ss_pred CCCCEEEEcCCC
Q 009708 405 VKCDKVLLDAPC 416 (528)
Q Consensus 405 ~~fD~Vl~D~Pc 416 (528)
...|.|+..+..
T Consensus 86 ~~~d~li~~ag~ 97 (255)
T PRK07523 86 GPIDILVNNAGM 97 (255)
T ss_pred CCCCEEEECCCC
Confidence 468999887654
No 348
>PRK07062 short chain dehydrogenase; Provisional
Probab=87.54 E-value=13 Score=36.56 Aligned_cols=81 Identities=16% Similarity=0.057 Sum_probs=52.8
Q ss_pred CCCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 404 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~ 404 (528)
.|.++|=.|++ |+.+.+++..+. .+.+|+.++.++..++.+.+.+....-...+.++..|+.+.... ..
T Consensus 7 ~~k~~lItGas-~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 85 (265)
T PRK07062 7 EGRVAVVTGGS-SGIGLATVELLLEAGASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEARF 85 (265)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHHhc
Confidence 36678888865 566666666553 35689999999988877766655432222467788888764321 12
Q ss_pred CCCCEEEEcCCC
Q 009708 405 VKCDKVLLDAPC 416 (528)
Q Consensus 405 ~~fD~Vl~D~Pc 416 (528)
+..|.++.++-.
T Consensus 86 g~id~li~~Ag~ 97 (265)
T PRK07062 86 GGVDMLVNNAGQ 97 (265)
T ss_pred CCCCEEEECCCC
Confidence 468998886544
No 349
>PRK07831 short chain dehydrogenase; Provisional
Probab=87.48 E-value=9.2 Score=37.52 Aligned_cols=81 Identities=17% Similarity=0.108 Sum_probs=51.7
Q ss_pred CCCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHH-cCCCccEEEEcCcccccccc---------C
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKL-HQVNSVIRTIHADLRTFADN---------S 403 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~-~g~~~~i~~~~~D~~~~~~~---------~ 403 (528)
.+.++|=.|++..+.+..+++.+. .+.+|+.+|.++..++...+.++. .+-. ++.++..|+.+.... .
T Consensus 16 ~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~ 94 (262)
T PRK07831 16 AGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADELAAELGLG-RVEAVVCDVTSEAQVDALIDAAVER 94 (262)
T ss_pred CCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhcCCc-eEEEEEccCCCHHHHHHHHHHHHHH
Confidence 356788887642255666555442 245799999998888777766654 3322 377888888763211 1
Q ss_pred CCCCCEEEEcCCC
Q 009708 404 TVKCDKVLLDAPC 416 (528)
Q Consensus 404 ~~~fD~Vl~D~Pc 416 (528)
.+..|.++.++-.
T Consensus 95 ~g~id~li~~ag~ 107 (262)
T PRK07831 95 LGRLDVLVNNAGL 107 (262)
T ss_pred cCCCCEEEECCCC
Confidence 2468999887654
No 350
>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]
Probab=87.46 E-value=3.1 Score=41.21 Aligned_cols=102 Identities=21% Similarity=0.262 Sum_probs=60.6
Q ss_pred HHHhcCCCCCCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccC--
Q 009708 327 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS-- 403 (528)
Q Consensus 327 ~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~-- 403 (528)
+-+...++||+.||=- ++.||.++.+.+.+. -+.++++.--+.+..+.+++ +|+...|.....|...-....
T Consensus 138 l~e~y~vkpGhtVlvh-aAAGGVGlll~Ql~ra~~a~tI~~asTaeK~~~ake----nG~~h~I~y~~eD~v~~V~kiTn 212 (336)
T KOG1197|consen 138 LFEAYNVKPGHTVLVH-AAAGGVGLLLCQLLRAVGAHTIATASTAEKHEIAKE----NGAEHPIDYSTEDYVDEVKKITN 212 (336)
T ss_pred HHHhcCCCCCCEEEEE-eccccHHHHHHHHHHhcCcEEEEEeccHHHHHHHHh----cCCcceeeccchhHHHHHHhccC
Confidence 3455678999988744 334555554444432 13578888777777776655 577665666666665433222
Q ss_pred CCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEE
Q 009708 404 TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLV 462 (528)
Q Consensus 404 ~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lv 462 (528)
+...|.++ |+ .|. +-+...+..||++|++|
T Consensus 213 gKGVd~vy-Ds----vG~------------------------dt~~~sl~~Lk~~G~mV 242 (336)
T KOG1197|consen 213 GKGVDAVY-DS----VGK------------------------DTFAKSLAALKPMGKMV 242 (336)
T ss_pred CCCceeee-cc----ccc------------------------hhhHHHHHHhccCceEE
Confidence 34577664 21 111 11555677788888887
No 351
>PRK07454 short chain dehydrogenase; Provisional
Probab=87.39 E-value=9.8 Score=36.68 Aligned_cols=76 Identities=12% Similarity=-0.046 Sum_probs=51.2
Q ss_pred CCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CCC
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 405 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~~ 405 (528)
+.++|=.|+ +|+.+..++..+- .+.+|++++.++.....+.+.++..+ ..+.++.+|+.+.... ..+
T Consensus 6 ~k~vlItG~-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 82 (241)
T PRK07454 6 MPRALITGA-SSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTG--VKAAAYSIDLSNPEAIAPGIAELLEQFG 82 (241)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCC--CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 457777775 6788887777653 24589999999887776666555443 2477888998764321 013
Q ss_pred CCCEEEEcC
Q 009708 406 KCDKVLLDA 414 (528)
Q Consensus 406 ~fD~Vl~D~ 414 (528)
..|.|+..+
T Consensus 83 ~id~lv~~a 91 (241)
T PRK07454 83 CPDVLINNA 91 (241)
T ss_pred CCCEEEECC
Confidence 579888754
No 352
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=87.27 E-value=7.5 Score=37.72 Aligned_cols=81 Identities=17% Similarity=0.060 Sum_probs=52.9
Q ss_pred CCCCeEEEeCCccchHHHHHHHHcCC-CcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccc-----------c
Q 009708 334 QPGQSIVDCCAAPGGKTLYMASCLSG-QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA-----------D 401 (528)
Q Consensus 334 ~~g~~VLDl~aG~G~kt~~la~~~~~-~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~-----------~ 401 (528)
.++.+||=.|+ +|+.+..+++.+-. +.+|++++.++..++.+...++..+.. .+.++..|+.... .
T Consensus 10 ~~~k~vlItG~-~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~ 87 (247)
T PRK08945 10 LKDRIILVTGA-GDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAGGP-QPAIIPLDLLTATPQNYQQLADTIE 87 (247)
T ss_pred cCCCEEEEeCC-CchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhcCCC-CceEEEecccCCCHHHHHHHHHHHH
Confidence 35778888884 67778777765532 348999999998887777666665543 3556666664211 0
Q ss_pred cCCCCCCEEEEcCCC
Q 009708 402 NSTVKCDKVLLDAPC 416 (528)
Q Consensus 402 ~~~~~fD~Vl~D~Pc 416 (528)
...++.|.|+..+..
T Consensus 88 ~~~~~id~vi~~Ag~ 102 (247)
T PRK08945 88 EQFGRLDGVLHNAGL 102 (247)
T ss_pred HHhCCCCEEEECCcc
Confidence 112468999987643
No 353
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=87.25 E-value=1.2 Score=43.02 Aligned_cols=103 Identities=21% Similarity=0.195 Sum_probs=62.3
Q ss_pred hHHHHHHhcCCC----C----CCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcC
Q 009708 323 SAGLVVAVVDPQ----P----GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHA 394 (528)
Q Consensus 323 ~s~l~~~~l~~~----~----g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~ 394 (528)
+|.+++.++... . .-++||+||=+....+... +.-.|++||+++.- + .+.+.
T Consensus 31 SSK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s~~----~~fdvt~IDLns~~-------------~---~I~qq 90 (219)
T PF11968_consen 31 SSKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACSTS----GWFDVTRIDLNSQH-------------P---GILQQ 90 (219)
T ss_pred hhHHHHHHhhhhccccccccccceEEeecccCCCCccccc----CceeeEEeecCCCC-------------C---Cceee
Confidence 667777765421 1 1489999998655433222 23469999997521 2 24677
Q ss_pred ccccccc--cCCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCE-----EEEE
Q 009708 395 DLRTFAD--NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGV-----LVYS 464 (528)
Q Consensus 395 D~~~~~~--~~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~-----Lvys 464 (528)
|+.+.+- ...++||+|.+- =++.--| ++...- ++|..+.++|+|+|. |+..
T Consensus 91 DFm~rplp~~~~e~FdvIs~S------LVLNfVP------~p~~RG-------~Ml~r~~~fL~~~g~~~~~~LFlV 148 (219)
T PF11968_consen 91 DFMERPLPKNESEKFDVISLS------LVLNFVP------DPKQRG-------EMLRRAHKFLKPPGLSLFPSLFLV 148 (219)
T ss_pred ccccCCCCCCcccceeEEEEE------EEEeeCC------CHHHHH-------HHHHHHHHHhCCCCccCcceEEEE
Confidence 8877542 235789988642 1111112 122222 359999999999999 6654
No 354
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.20 E-value=1 Score=41.41 Aligned_cols=105 Identities=18% Similarity=0.233 Sum_probs=63.0
Q ss_pred CCeEEEeCCccchHH-HHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCc--cEEEEcCccccccc-cCCCCCCEEE
Q 009708 336 GQSIVDCCAAPGGKT-LYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNS--VIRTIHADLRTFAD-NSTVKCDKVL 411 (528)
Q Consensus 336 g~~VLDl~aG~G~kt-~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~--~i~~~~~D~~~~~~-~~~~~fD~Vl 411 (528)
|..||++|.|--+.+ +.+|.. .+...|.-.|-++..++-.++....+.... .+.++..+.-.-.. .....||.|+
T Consensus 30 g~~ilelgggft~laglmia~~-a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIl 108 (201)
T KOG3201|consen 30 GRRILELGGGFTGLAGLMIACK-APDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIIL 108 (201)
T ss_pred HHHHHHhcCchhhhhhhheeee-cCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEE
Confidence 678999998855444 444443 345789999999999988887666653322 11111111111000 1135899998
Q ss_pred EcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEE
Q 009708 412 LDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463 (528)
Q Consensus 412 ~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvy 463 (528)
+ +-|. -+.+....+.+....+|+|.|.-++
T Consensus 109 a-ADCl---------------------FfdE~h~sLvdtIk~lL~p~g~Al~ 138 (201)
T KOG3201|consen 109 A-ADCL---------------------FFDEHHESLVDTIKSLLRPSGRALL 138 (201)
T ss_pred e-ccch---------------------hHHHHHHHHHHHHHHHhCcccceeE
Confidence 6 4551 1222334568888999999987553
No 355
>PRK07814 short chain dehydrogenase; Provisional
Probab=87.14 E-value=7.8 Score=38.13 Aligned_cols=78 Identities=17% Similarity=0.067 Sum_probs=53.2
Q ss_pred CCCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 404 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~ 404 (528)
.+.+||=.|+ +|+.+.++++.+- .+.+|+.++.++..++.+.+.++..+. .+.++..|..+.... ..
T Consensus 9 ~~~~vlItGa-sggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~ 85 (263)
T PRK07814 9 DDQVAVVTGA-GRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAGR--RAHVVAADLAHPEATAGLAGQAVEAF 85 (263)
T ss_pred CCCEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--cEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 4668888885 6778887776542 345899999998887777666655442 377888888764321 01
Q ss_pred CCCCEEEEcCC
Q 009708 405 VKCDKVLLDAP 415 (528)
Q Consensus 405 ~~fD~Vl~D~P 415 (528)
+++|.|+..+-
T Consensus 86 ~~id~vi~~Ag 96 (263)
T PRK07814 86 GRLDIVVNNVG 96 (263)
T ss_pred CCCCEEEECCC
Confidence 46899887653
No 356
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=87.13 E-value=14 Score=36.40 Aligned_cols=80 Identities=13% Similarity=-0.003 Sum_probs=53.4
Q ss_pred CCCeEEEeCCccchHHHHHHHHc-CCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCL-SGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 404 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~-~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~ 404 (528)
.+.++|=.|++. +.+..++..+ ..+.+|+.++.++..++.+...++..+. .+.++.+|+.+.... ..
T Consensus 9 ~~k~~lItGa~~-~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~~~ 85 (265)
T PRK07097 9 KGKIALITGASY-GIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELGI--EAHGYVCDVTDEDGVQAMVSQIEKEV 85 (265)
T ss_pred CCCEEEEeCCCc-hHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCC--ceEEEEcCCCCHHHHHHHHHHHHHhC
Confidence 356788887764 5565555543 2356899999999888877777766553 367888898764211 12
Q ss_pred CCCCEEEEcCCCC
Q 009708 405 VKCDKVLLDAPCS 417 (528)
Q Consensus 405 ~~fD~Vl~D~Pcs 417 (528)
+.+|.++.++-..
T Consensus 86 ~~id~li~~ag~~ 98 (265)
T PRK07097 86 GVIDILVNNAGII 98 (265)
T ss_pred CCCCEEEECCCCC
Confidence 4689999876553
No 357
>PRK05599 hypothetical protein; Provisional
Probab=87.03 E-value=11 Score=36.80 Aligned_cols=75 Identities=9% Similarity=-0.011 Sum_probs=52.2
Q ss_pred eEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CCCCCC
Q 009708 338 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STVKCD 408 (528)
Q Consensus 338 ~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~~~fD 408 (528)
.||=.|++ +|.+..++..+..+.+|+.++.++..++.+.+.++..|-. .+.++..|+.+.... ..+..|
T Consensus 2 ~vlItGas-~GIG~aia~~l~~g~~Vil~~r~~~~~~~~~~~l~~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~g~id 79 (246)
T PRK05599 2 SILILGGT-SDIAGEIATLLCHGEDVVLAARRPEAAQGLASDLRQRGAT-SVHVLSFDAQDLDTHRELVKQTQELAGEIS 79 (246)
T ss_pred eEEEEeCc-cHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhccCC-ceEEEEcccCCHHHHHHHHHHHHHhcCCCC
Confidence 35655664 5678888876665678999999999988887777665533 366788888764211 125789
Q ss_pred EEEEcC
Q 009708 409 KVLLDA 414 (528)
Q Consensus 409 ~Vl~D~ 414 (528)
.++.++
T Consensus 80 ~lv~na 85 (246)
T PRK05599 80 LAVVAF 85 (246)
T ss_pred EEEEec
Confidence 988764
No 358
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=86.99 E-value=4 Score=41.82 Aligned_cols=100 Identities=16% Similarity=0.126 Sum_probs=58.6
Q ss_pred cCCCCC--CeEEEeCC--ccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccc-ccCCC
Q 009708 331 VDPQPG--QSIVDCCA--APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA-DNSTV 405 (528)
Q Consensus 331 l~~~~g--~~VLDl~a--G~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~-~~~~~ 405 (528)
...++| ++||=.|+ |.|..++++|+.++ ..+|++++.++++.+.+++. +|.+..+.....|..... .....
T Consensus 148 ~~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G-~~~Vi~~~~s~~~~~~~~~~---lGa~~vi~~~~~~~~~~i~~~~~~ 223 (345)
T cd08293 148 GHITPGANQTMVVSGAAGACGSLAGQIGRLLG-CSRVVGICGSDEKCQLLKSE---LGFDAAINYKTDNVAERLRELCPE 223 (345)
T ss_pred ccCCCCCCCEEEEECCCcHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHh---cCCcEEEECCCCCHHHHHHHHCCC
Confidence 345555 88888775 45666677777642 22799999998887766542 576542221112222111 11124
Q ss_pred CCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEE
Q 009708 406 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463 (528)
Q Consensus 406 ~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvy 463 (528)
.+|.|+ | |.|.. .+..+++.|+++|+++.
T Consensus 224 gvd~vi-d--~~g~~--------------------------~~~~~~~~l~~~G~iv~ 252 (345)
T cd08293 224 GVDVYF-D--NVGGE--------------------------ISDTVISQMNENSHIIL 252 (345)
T ss_pred CceEEE-E--CCCcH--------------------------HHHHHHHHhccCCEEEE
Confidence 689887 4 33211 14567788999999884
No 359
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=86.98 E-value=3.5 Score=41.76 Aligned_cols=101 Identities=17% Similarity=0.130 Sum_probs=61.1
Q ss_pred HhcCCCCCCeEEEeCC--ccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccc-ccCCC
Q 009708 329 AVVDPQPGQSIVDCCA--APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA-DNSTV 405 (528)
Q Consensus 329 ~~l~~~~g~~VLDl~a--G~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~-~~~~~ 405 (528)
....+++|++||=.|+ +.|..++++|+.+ +.+|++++.++++.+.+++ +|.+..+.....|..... .....
T Consensus 137 ~~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~--G~~vi~~~~s~~~~~~l~~----~Ga~~vi~~~~~~~~~~v~~~~~~ 210 (329)
T cd08294 137 EICKPKAGETVVVNGAAGAVGSLVGQIAKIK--GCKVIGCAGSDDKVAWLKE----LGFDAVFNYKTVSLEEALKEAAPD 210 (329)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCCEEEeCCCccHHHHHHHHCCC
Confidence 3456788999887764 4455667777764 3579999999988777654 576532222112221111 11124
Q ss_pred CCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 406 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 406 ~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
.+|.|+ | |.|. ..+..+++.|+++|+++..
T Consensus 211 gvd~vl-d--~~g~--------------------------~~~~~~~~~l~~~G~iv~~ 240 (329)
T cd08294 211 GIDCYF-D--NVGG--------------------------EFSSTVLSHMNDFGRVAVC 240 (329)
T ss_pred CcEEEE-E--CCCH--------------------------HHHHHHHHhhccCCEEEEE
Confidence 589776 3 4331 1256778889999998743
No 360
>PRK07109 short chain dehydrogenase; Provisional
Probab=86.96 E-value=12 Score=38.67 Aligned_cols=79 Identities=15% Similarity=0.035 Sum_probs=54.2
Q ss_pred CCCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 404 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~ 404 (528)
.+.+||=.|+ +|+.+..+++.+- .+.+|+.++.++..++.+.+.++..|.+ +.++.+|+.+.... ..
T Consensus 7 ~~k~vlITGa-s~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~~--~~~v~~Dv~d~~~v~~~~~~~~~~~ 83 (334)
T PRK07109 7 GRQVVVITGA-SAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGGE--ALAVVADVADAEAVQAAADRAEEEL 83 (334)
T ss_pred CCCEEEEECC-CCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCc--EEEEEecCCCHHHHHHHHHHHHHHC
Confidence 3556777775 5667777766553 3458999999999988887777766643 67788888764321 12
Q ss_pred CCCCEEEEcCCC
Q 009708 405 VKCDKVLLDAPC 416 (528)
Q Consensus 405 ~~fD~Vl~D~Pc 416 (528)
+.+|.++.++-.
T Consensus 84 g~iD~lInnAg~ 95 (334)
T PRK07109 84 GPIDTWVNNAMV 95 (334)
T ss_pred CCCCEEEECCCc
Confidence 468999887654
No 361
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=86.91 E-value=14 Score=36.03 Aligned_cols=79 Identities=13% Similarity=0.125 Sum_probs=52.9
Q ss_pred CCeEEEeCCccchHHHHHHHHcCC-CcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CCC
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLSG-QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 405 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~~-~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~~ 405 (528)
+.++|=.|+ +|+.+..++..+-. +.+|+.++.++..+..+...++..+. .+.++..|+.+.... ..+
T Consensus 9 ~k~~lItGa-s~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 85 (254)
T PRK08085 9 GKNILITGS-AQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQEGI--KAHAAPFNVTHKQEVEAAIEHIEKDIG 85 (254)
T ss_pred CCEEEEECC-CChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCC--eEEEEecCCCCHHHHHHHHHHHHHhcC
Confidence 567777775 46777777766543 45899999998888777666665543 366777887664211 124
Q ss_pred CCCEEEEcCCCC
Q 009708 406 KCDKVLLDAPCS 417 (528)
Q Consensus 406 ~fD~Vl~D~Pcs 417 (528)
.+|.|+.++-..
T Consensus 86 ~id~vi~~ag~~ 97 (254)
T PRK08085 86 PIDVLINNAGIQ 97 (254)
T ss_pred CCCEEEECCCcC
Confidence 689999876543
No 362
>PRK06139 short chain dehydrogenase; Provisional
Probab=86.83 E-value=8.6 Score=39.71 Aligned_cols=83 Identities=12% Similarity=0.109 Sum_probs=55.9
Q ss_pred CCCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 404 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~ 404 (528)
.+.+||=.|+ +|+.+..+++.+. .+.+|+.++.++..++.+.+.++..|.+ +.++..|+.+.... ..
T Consensus 6 ~~k~vlITGA-s~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g~~--~~~~~~Dv~d~~~v~~~~~~~~~~~ 82 (330)
T PRK06139 6 HGAVVVITGA-SSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALGAE--VLVVPTDVTDADQVKALATQAASFG 82 (330)
T ss_pred CCCEEEEcCC-CCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCc--EEEEEeeCCCHHHHHHHHHHHHHhc
Confidence 3567776666 5667777766543 3468999999999998888888776653 66777888753210 12
Q ss_pred CCCCEEEEcCCCCCCc
Q 009708 405 VKCDKVLLDAPCSGLG 420 (528)
Q Consensus 405 ~~fD~Vl~D~Pcsg~G 420 (528)
+.+|.++.++-....+
T Consensus 83 g~iD~lVnnAG~~~~~ 98 (330)
T PRK06139 83 GRIDVWVNNVGVGAVG 98 (330)
T ss_pred CCCCEEEECCCcCCCC
Confidence 5689999876544333
No 363
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=86.79 E-value=9.4 Score=38.14 Aligned_cols=78 Identities=10% Similarity=-0.039 Sum_probs=48.2
Q ss_pred CCeEEEeCCcc-chHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CC
Q 009708 336 GQSIVDCCAAP-GGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 404 (528)
Q Consensus 336 g~~VLDl~aG~-G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~ 404 (528)
|..||=.|+++ +|.+..+|..+- .+.+|+.++.+....+.+++..+..+.. .++..|+.+.... ..
T Consensus 5 ~k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~---~~~~~Dv~d~~~v~~~~~~i~~~~ 81 (274)
T PRK08415 5 GKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEALKKRVEPIAQELGSD---YVYELDVSKPEHFKSLAESLKKDL 81 (274)
T ss_pred CcEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcCCc---eEEEecCCCHHHHHHHHHHHHHHc
Confidence 66888888874 677877776553 3458888888854333444443444422 3567788764321 12
Q ss_pred CCCCEEEEcCCC
Q 009708 405 VKCDKVLLDAPC 416 (528)
Q Consensus 405 ~~fD~Vl~D~Pc 416 (528)
+++|.++.++-.
T Consensus 82 g~iDilVnnAG~ 93 (274)
T PRK08415 82 GKIDFIVHSVAF 93 (274)
T ss_pred CCCCEEEECCcc
Confidence 578998887643
No 364
>PRK07774 short chain dehydrogenase; Provisional
Probab=86.75 E-value=6.6 Score=38.02 Aligned_cols=78 Identities=15% Similarity=0.101 Sum_probs=50.8
Q ss_pred CCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CCC
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 405 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~~ 405 (528)
+.+||=.| |+|+.+.+++..+- .+.+|+.++.++.....+...++..+ ..+.++..|+.+.... ..+
T Consensus 6 ~k~vlItG-asg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 82 (250)
T PRK07774 6 DKVAIVTG-AAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVADG--GTAIAVQVDVSDPDSAKAMADATVSAFG 82 (250)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence 55777666 56778888877553 34589999998877766655554332 2356778888764321 113
Q ss_pred CCCEEEEcCCC
Q 009708 406 KCDKVLLDAPC 416 (528)
Q Consensus 406 ~fD~Vl~D~Pc 416 (528)
.+|.|+..+..
T Consensus 83 ~id~vi~~ag~ 93 (250)
T PRK07774 83 GIDYLVNNAAI 93 (250)
T ss_pred CCCEEEECCCC
Confidence 68999987654
No 365
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=86.51 E-value=5.3 Score=40.90 Aligned_cols=103 Identities=24% Similarity=0.262 Sum_probs=58.1
Q ss_pred HhcCCCCCCeEEEeCCcc-chHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc-CCCC
Q 009708 329 AVVDPQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVK 406 (528)
Q Consensus 329 ~~l~~~~g~~VLDl~aG~-G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~-~~~~ 406 (528)
..+.+++|++||=.|+|+ |..+.++|+.++ ..+|++++.++++.+.++ .+|.+..+.....+...+... ....
T Consensus 157 ~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~G-~~~vi~~~~~~~~~~~~~----~~ga~~~i~~~~~~~~~~~~~~~~~~ 231 (339)
T cd08239 157 RRVGVSGRDTVLVVGAGPVGLGALMLARALG-AEDVIGVDPSPERLELAK----ALGADFVINSGQDDVQEIRELTSGAG 231 (339)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHH----HhCCCEEEcCCcchHHHHHHHhCCCC
Confidence 345677899988887643 223345555543 234999999999887664 456543221111111111111 1236
Q ss_pred CCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 407 CDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 407 fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
+|+|+- |+|.. ..+..+++.|+++|+++..
T Consensus 232 ~d~vid---~~g~~-------------------------~~~~~~~~~l~~~G~~v~~ 261 (339)
T cd08239 232 ADVAIE---CSGNT-------------------------AARRLALEAVRPWGRLVLV 261 (339)
T ss_pred CCEEEE---CCCCH-------------------------HHHHHHHHHhhcCCEEEEE
Confidence 998873 33311 1256678889999998743
No 366
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=86.47 E-value=4.6 Score=39.19 Aligned_cols=99 Identities=24% Similarity=0.268 Sum_probs=59.3
Q ss_pred CCCCCeEEEeCCcc-chHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccc-ccccCCCCCCEE
Q 009708 333 PQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT-FADNSTVKCDKV 410 (528)
Q Consensus 333 ~~~g~~VLDl~aG~-G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~-~~~~~~~~fD~V 410 (528)
..+|++||..|+|+ |..+.+++..+ +.+|++++.++.+.+.++. .|....+.....+... ........+|.|
T Consensus 132 ~~~~~~vli~g~~~~G~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~d~v 205 (271)
T cd05188 132 LKPGDTVLVLGAGGVGLLAAQLAKAA--GARVIVTDRSDEKLELAKE----LGADHVIDYKEEDLEEELRLTGGGGADVV 205 (271)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEcCCHHHHHHHHH----hCCceeccCCcCCHHHHHHHhcCCCCCEE
Confidence 37789999999886 55666777664 3689999999888776643 3433211111111111 001113569998
Q ss_pred EEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEc
Q 009708 411 LLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465 (528)
Q Consensus 411 l~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysT 465 (528)
+. |.+. . ..+..+.+.++++|+++...
T Consensus 206 i~---~~~~---------------~----------~~~~~~~~~l~~~G~~v~~~ 232 (271)
T cd05188 206 ID---AVGG---------------P----------ETLAQALRLLRPGGRIVVVG 232 (271)
T ss_pred EE---CCCC---------------H----------HHHHHHHHhcccCCEEEEEc
Confidence 85 3221 0 13666778899999988543
No 367
>KOG4174 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.44 E-value=7.2 Score=38.53 Aligned_cols=120 Identities=17% Similarity=0.167 Sum_probs=75.4
Q ss_pred CCCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHH------HHHHHH---HHHcCCCccEEEEcCccccccc--c
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRL------RILNET---AKLHQVNSVIRTIHADLRTFAD--N 402 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l------~~~~~n---~~~~g~~~~i~~~~~D~~~~~~--~ 402 (528)
...+||-+|=|-=.++..++...+ ..+.|+|..++..-. --++.| ++++|+. .+...|++.+.. .
T Consensus 56 ~~~~ill~gEgdFSfs~sl~~~~g~sa~ni~atSlDsk~~dl~~KY~~~~~nv~~Lk~lG~~---I~h~Vdv~sl~~~~~ 132 (282)
T KOG4174|consen 56 KKQKILLVGEGDFSFSLSLAPHFGRSAGNITATSLDSKEFDLKQKYPDAKENVEALKRLGGT---ILHGVDVTSLKFHAD 132 (282)
T ss_pred ccccEEEecccchhhHHHHHHHhCccccceeeeeccchhhhhhhcccchHHHHHHHHHcCCc---eEecccceeEEeccc
Confidence 345788888877777888887755 345565554443331 123334 4566654 234456555432 1
Q ss_pred -CCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCc-CCCEEEEE
Q 009708 403 -STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVK-PGGVLVYS 464 (528)
Q Consensus 403 -~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~Lk-pGG~Lvys 464 (528)
..+.||.||.+-|.+|.|.- ..-| ..-+....++-+.+|+.|..+|+ ..|.|+..
T Consensus 133 ~~~~~~d~IiFNFPH~G~g~~-~e~d------~~~i~~~qkL~rgFle~akemL~~edGeI~it 189 (282)
T KOG4174|consen 133 LRLQRYDNIIFNFPHSGKGIK-FEQD------RNIIPLHQKLFRGFLESAKEMLKDEDGEIHIT 189 (282)
T ss_pred ccccccceEEEcCCCCCCCcc-cccc------hHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEE
Confidence 14679999999999999984 1111 12233455667789999999999 77877653
No 368
>PRK08324 short chain dehydrogenase; Validated
Probab=86.44 E-value=7.1 Score=44.60 Aligned_cols=124 Identities=17% Similarity=0.144 Sum_probs=70.8
Q ss_pred CCCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 404 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~ 404 (528)
.|.+||=.|+ +|+.+..++..+. .+.+|+.+|.++..++.+...+... ..+.++..|+.+.... ..
T Consensus 421 ~gk~vLVTGa-sggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~---~~v~~v~~Dvtd~~~v~~~~~~~~~~~ 496 (681)
T PRK08324 421 AGKVALVTGA-AGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGP---DRALGVACDVTDEAAVQAAFEEAALAF 496 (681)
T ss_pred CCCEEEEecC-CCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhcc---CcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence 5678887775 4667776666543 3458999999998877665544332 2477888887663211 12
Q ss_pred CCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcC---CCEEEEEc
Q 009708 405 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKP---GGVLVYST 465 (528)
Q Consensus 405 ~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~Lkp---GG~LvysT 465 (528)
+.+|.|+.++-.+..+.+...+...|. ..+.....-...+++.+...+++ ||.+|+.+
T Consensus 497 g~iDvvI~~AG~~~~~~~~~~~~~~~~---~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vs 557 (681)
T PRK08324 497 GGVDIVVSNAGIAISGPIEETSDEDWR---RSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIA 557 (681)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHH---HHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEEC
Confidence 468999987654433333222222221 11111222233456667776665 67777554
No 369
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=86.38 E-value=0.48 Score=45.35 Aligned_cols=55 Identities=22% Similarity=0.300 Sum_probs=31.5
Q ss_pred CCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 407 CDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 407 fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
.|+|+.|||+.. +.-.. ....+ .......+........+.++.++|||||.+++.
T Consensus 1 VdliitDPPY~~-~~~~~-~~~~~-~~~~~~~~y~~~~~~~~~~~~rvLk~~g~~~i~ 55 (231)
T PF01555_consen 1 VDLIITDPPYNI-GKDYN-NYFDY-GDNKNHEEYLEWMEEWLKECYRVLKPGGSIFIF 55 (231)
T ss_dssp EEEEEE---TSS-SCS------CS-CHCCHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCEEEECCCCCC-CCCcc-hhhhc-cCCCCHHHHHHHHHHHHHHHHhhcCCCeeEEEE
Confidence 489999999942 22100 00000 111245566667788899999999999987743
No 370
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=86.24 E-value=16 Score=35.58 Aligned_cols=79 Identities=13% Similarity=0.072 Sum_probs=53.4
Q ss_pred CCCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 404 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~ 404 (528)
.|.+||=.|+ +|+.+..++..+. .+.+|+.++.++..++.+...++..+. .+.++.+|+.+.... ..
T Consensus 10 ~~k~ilItGa-s~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~~~ 86 (256)
T PRK06124 10 AGQVALVTGS-ARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAGG--AAEALAFDIADEEAVAAAFARIDAEH 86 (256)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcCC--ceEEEEccCCCHHHHHHHHHHHHHhc
Confidence 3668888885 5666777666542 356899999998888777776666553 367888888763210 12
Q ss_pred CCCCEEEEcCCC
Q 009708 405 VKCDKVLLDAPC 416 (528)
Q Consensus 405 ~~fD~Vl~D~Pc 416 (528)
+++|.|+..+-.
T Consensus 87 ~~id~vi~~ag~ 98 (256)
T PRK06124 87 GRLDILVNNVGA 98 (256)
T ss_pred CCCCEEEECCCC
Confidence 468999886543
No 371
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=86.23 E-value=8.1 Score=39.30 Aligned_cols=79 Identities=15% Similarity=0.111 Sum_probs=48.4
Q ss_pred CCeEEEeCCccchHHHHHHHHcCC-CcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc--CCCCCCEEEE
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLSG-QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN--STVKCDKVLL 412 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~~-~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~--~~~~fD~Vl~ 412 (528)
|.+||=.| |+|..+.+++..+-. +.+|+++..++.............+....++++.+|+.+.... .-..+|.|+.
T Consensus 5 ~k~vlVtG-~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vih 83 (325)
T PLN02989 5 GKVVCVTG-ASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETVFH 83 (325)
T ss_pred CCEEEEEC-CchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEEEE
Confidence 56788777 568889888876643 3478777766654433322222223323478888998875321 1235798887
Q ss_pred cCC
Q 009708 413 DAP 415 (528)
Q Consensus 413 D~P 415 (528)
.+.
T Consensus 84 ~A~ 86 (325)
T PLN02989 84 TAS 86 (325)
T ss_pred eCC
Confidence 654
No 372
>PTZ00357 methyltransferase; Provisional
Probab=86.15 E-value=2.1 Score=47.76 Aligned_cols=76 Identities=21% Similarity=0.152 Sum_probs=50.1
Q ss_pred eEEEeCCccchHH---HHHHHHcCCCcEEEEEcCChHHHHHHHHHH-HHcCC-------CccEEEEcCccccccccC---
Q 009708 338 SIVDCCAAPGGKT---LYMASCLSGQGLVYAIDINKGRLRILNETA-KLHQV-------NSVIRTIHADLRTFADNS--- 403 (528)
Q Consensus 338 ~VLDl~aG~G~kt---~~la~~~~~~~~v~avD~s~~~l~~~~~n~-~~~g~-------~~~i~~~~~D~~~~~~~~--- 403 (528)
.|+=+|||-|-.- +.+++..+-..+|+|||.++..+.....+. ..... .+.|+++..|++.+....
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~ 782 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG 782 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence 5899999999864 444454444568999999977544443332 22233 345899999999974321
Q ss_pred -------CCCCCEEEEc
Q 009708 404 -------TVKCDKVLLD 413 (528)
Q Consensus 404 -------~~~fD~Vl~D 413 (528)
-+++|+|+..
T Consensus 783 s~~~P~~~gKaDIVVSE 799 (1072)
T PTZ00357 783 SLTLPADFGLCDLIVSE 799 (1072)
T ss_pred cccccccccccceehHh
Confidence 1368988853
No 373
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=86.07 E-value=5.9 Score=41.30 Aligned_cols=102 Identities=25% Similarity=0.332 Sum_probs=59.2
Q ss_pred hcCCCCCCeEEEeCCcc-chHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccc-ccccCCCCC
Q 009708 330 VVDPQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT-FADNSTVKC 407 (528)
Q Consensus 330 ~l~~~~g~~VLDl~aG~-G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~-~~~~~~~~f 407 (528)
...+++|++||=.|+|. |..++++|+.++ ...++++|.++.+.+.+++ .|.+..+.....+... +.......+
T Consensus 181 ~~~~~~g~~vlI~g~g~vG~~~~~la~~~G-~~~v~~~~~~~~k~~~~~~----~g~~~~i~~~~~~~~~~v~~~~~~~~ 255 (365)
T cd08278 181 VLKPRPGSSIAVFGAGAVGLAAVMAAKIAG-CTTIIAVDIVDSRLELAKE----LGATHVINPKEEDLVAAIREITGGGV 255 (365)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----cCCcEEecCCCcCHHHHHHHHhCCCC
Confidence 34567888888887643 445566666643 3479999999988876643 4554211111111111 111113468
Q ss_pred CEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 408 DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 408 D~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
|+|+- |+|.+. .+..+++.++++|+++..
T Consensus 256 d~vld---~~g~~~-------------------------~~~~~~~~l~~~G~~v~~ 284 (365)
T cd08278 256 DYALD---TTGVPA-------------------------VIEQAVDALAPRGTLALV 284 (365)
T ss_pred cEEEE---CCCCcH-------------------------HHHHHHHHhccCCEEEEe
Confidence 98874 443221 367778888999988843
No 374
>PRK05876 short chain dehydrogenase; Provisional
Probab=86.05 E-value=13 Score=37.13 Aligned_cols=80 Identities=20% Similarity=0.173 Sum_probs=53.5
Q ss_pred CCCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 404 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~ 404 (528)
.|.+||=.|++ |+.+.+++..+. .+.+|+.+|.++..++.+.+.++..+. .+.++..|+.+.... ..
T Consensus 5 ~~k~vlVTGas-~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~~--~~~~~~~Dv~d~~~v~~~~~~~~~~~ 81 (275)
T PRK05876 5 PGRGAVITGGA-SGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEGF--DVHGVMCDVRHREEVTHLADEAFRLL 81 (275)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--eEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence 36678877765 667777776553 345899999998888776666655443 367788888764311 12
Q ss_pred CCCCEEEEcCCCC
Q 009708 405 VKCDKVLLDAPCS 417 (528)
Q Consensus 405 ~~fD~Vl~D~Pcs 417 (528)
+..|.|+.++-..
T Consensus 82 g~id~li~nAg~~ 94 (275)
T PRK05876 82 GHVDVVFSNAGIV 94 (275)
T ss_pred CCCCEEEECCCcC
Confidence 4689999876543
No 375
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=86.01 E-value=3.8 Score=44.12 Aligned_cols=112 Identities=17% Similarity=0.219 Sum_probs=73.5
Q ss_pred CCC-eEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEc
Q 009708 335 PGQ-SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLD 413 (528)
Q Consensus 335 ~g~-~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D 413 (528)
+-. ++|-+|||.--.+.++-+ .+--.|+.+|+|+-.++.....-.+. -. -+.+...|...+... .++||+||.-
T Consensus 47 p~~~~~l~lGCGNS~l~e~ly~--~G~~dI~~iD~S~V~V~~m~~~~~~~-~~-~~~~~~~d~~~l~fe-dESFdiVIdk 121 (482)
T KOG2352|consen 47 PSDFKILQLGCGNSELSEHLYK--NGFEDITNIDSSSVVVAAMQVRNAKE-RP-EMQMVEMDMDQLVFE-DESFDIVIDK 121 (482)
T ss_pred hhhceeEeecCCCCHHHHHHHh--cCCCCceeccccHHHHHHHHhccccC-Cc-ceEEEEecchhccCC-CcceeEEEec
Confidence 444 899999999877777655 23447999999999998776543322 12 367788888776533 4789988741
Q ss_pred CCCCCCccccC---CchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcC
Q 009708 414 APCSGLGVLSK---RADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTC 466 (528)
Q Consensus 414 ~Pcsg~G~~~~---~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTc 466 (528)
|++.. ..+..|+. ..+ ...+....+++++||+.+-.||
T Consensus 122 ------GtlDal~~de~a~~~~--~~v-------~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 122 ------GTLDALFEDEDALLNT--AHV-------SNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred ------CccccccCCchhhhhh--HHh-------hHHHhhHHHHhccCCEEEEEEe
Confidence 22221 11112211 111 2348889999999999998888
No 376
>PRK05993 short chain dehydrogenase; Provisional
Probab=85.66 E-value=9.4 Score=37.97 Aligned_cols=72 Identities=17% Similarity=0.149 Sum_probs=47.4
Q ss_pred CCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccc----------cCC
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD----------NST 404 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~----------~~~ 404 (528)
+.+||=.|| +|+.+.++++.+. .+.+|++++.++..++.+.. .+ ++++..|+.+... ...
T Consensus 4 ~k~vlItGa-sggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l~~----~~----~~~~~~Dl~d~~~~~~~~~~~~~~~~ 74 (277)
T PRK05993 4 KRSILITGC-SSGIGAYCARALQSDGWRVFATCRKEEDVAALEA----EG----LEAFQLDYAEPESIAALVAQVLELSG 74 (277)
T ss_pred CCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH----CC----ceEEEccCCCHHHHHHHHHHHHHHcC
Confidence 557787776 5788888877653 34589999999887765432 22 5567788876321 112
Q ss_pred CCCCEEEEcCCC
Q 009708 405 VKCDKVLLDAPC 416 (528)
Q Consensus 405 ~~fD~Vl~D~Pc 416 (528)
+..|.|+.++-.
T Consensus 75 g~id~li~~Ag~ 86 (277)
T PRK05993 75 GRLDALFNNGAY 86 (277)
T ss_pred CCccEEEECCCc
Confidence 468999887543
No 377
>PRK12937 short chain dehydrogenase; Provisional
Probab=85.65 E-value=17 Score=34.96 Aligned_cols=122 Identities=17% Similarity=0.077 Sum_probs=67.7
Q ss_pred CCeEEEeCCccchHHHHHHHHcCC-CcEEEEEcC-ChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CC
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLSG-QGLVYAIDI-NKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 404 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~~-~~~v~avD~-s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~ 404 (528)
+.+||=.|+ +|+.+..++..+.. +.+++.+.. ++...+.+.+.+...+. .+.++..|+.+.... ..
T Consensus 5 ~~~vlItG~-~~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~~~ 81 (245)
T PRK12937 5 NKVAIVTGA-SRGIGAAIARRLAADGFAVAVNYAGSAAAADELVAEIEAAGG--RAIAVQADVADAAAVTRLFDAAETAF 81 (245)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhcCC--eEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 556777776 47788888776543 346666554 34445555555554442 477888888764211 02
Q ss_pred CCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHH----HHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 405 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEEL----KILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 405 ~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l----~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
+..|.|+..+.....+.+... +.++.... ..-...+++.+...++++|.+++.++.
T Consensus 82 ~~id~vi~~ag~~~~~~~~~~-------~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~ 141 (245)
T PRK12937 82 GRIDVLVNNAGVMPLGTIADF-------DLEDFDRTIATNLRGAFVVLREAARHLGQGGRIINLSTS 141 (245)
T ss_pred CCCCEEEECCCCCCCCChhhC-------CHHHHHHHHhhhchHHHHHHHHHHHHhccCcEEEEEeec
Confidence 468999987543322222211 22222211 112234566666677778999988765
No 378
>PRK06172 short chain dehydrogenase; Provisional
Probab=85.62 E-value=15 Score=35.75 Aligned_cols=77 Identities=12% Similarity=-0.029 Sum_probs=52.5
Q ss_pred CCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CCC
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 405 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~~ 405 (528)
+.+||=.|+ +|+.+..++..+. .+.+|+.++.++..++.+.+.++..+. .+.++.+|+.+.... ..+
T Consensus 7 ~k~ilItGa-s~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~i~~~~~~~~~~~g 83 (253)
T PRK06172 7 GKVALVTGG-AAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAGG--EALFVACDVTRDAEVKALVEQTIAAYG 83 (253)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCC--ceEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence 567888886 5667777766553 345899999999888777777666543 377888888763210 124
Q ss_pred CCCEEEEcCC
Q 009708 406 KCDKVLLDAP 415 (528)
Q Consensus 406 ~fD~Vl~D~P 415 (528)
++|.|+.++-
T Consensus 84 ~id~li~~ag 93 (253)
T PRK06172 84 RLDYAFNNAG 93 (253)
T ss_pred CCCEEEECCC
Confidence 6899997653
No 379
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=85.33 E-value=0.79 Score=46.48 Aligned_cols=79 Identities=10% Similarity=0.149 Sum_probs=55.9
Q ss_pred EEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccc------ccCCCCCCEEEEc
Q 009708 340 VDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA------DNSTVKCDKVLLD 413 (528)
Q Consensus 340 LDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~------~~~~~~fD~Vl~D 413 (528)
+|+|.|.-..--.+...+. ....+|.|++...+..+..|...+++...+.+++....... ......||.++||
T Consensus 107 iDIgtgasci~~llg~rq~-n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~ktll~d~~~~~~e~~ydFcMcN 185 (419)
T KOG2912|consen 107 IDIGTGASCIYPLLGARQN-NWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQKTLLMDALKEESEIIYDFCMCN 185 (419)
T ss_pred eeccCchhhhHHhhhchhc-cceeeeeeccccccchhhccccccccccceeeEEecchhhcchhhhccCccceeeEEecC
Confidence 7888776554444444433 36789999999999999999999999887777765332110 0112469999999
Q ss_pred CCCCCC
Q 009708 414 APCSGL 419 (528)
Q Consensus 414 ~Pcsg~ 419 (528)
||..-.
T Consensus 186 PPFfe~ 191 (419)
T KOG2912|consen 186 PPFFEN 191 (419)
T ss_pred Cchhhc
Confidence 998543
No 380
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=85.32 E-value=14 Score=36.76 Aligned_cols=123 Identities=14% Similarity=0.012 Sum_probs=66.6
Q ss_pred CCeEEEeCCc-cchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccc---------cCC
Q 009708 336 GQSIVDCCAA-PGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD---------NST 404 (528)
Q Consensus 336 g~~VLDl~aG-~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~---------~~~ 404 (528)
|.++|=.|++ ++|.+..+++.+- .+.+|+.+..+....+.+++..+..+ . ..++..|+.+... ...
T Consensus 10 ~k~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~~~~~~~~~~l~~~~~--~-~~~~~~Dl~~~~~v~~~~~~~~~~~ 86 (272)
T PRK08159 10 GKRGLILGVANNRSIAWGIAKACRAAGAELAFTYQGDALKKRVEPLAAELG--A-FVAGHCDVTDEASIDAVFETLEKKW 86 (272)
T ss_pred CCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCchHHHHHHHHHHHhcC--C-ceEEecCCCCHHHHHHHHHHHHHhc
Confidence 5678888887 4788888887663 34577777665433344444444443 2 3457788865321 112
Q ss_pred CCCCEEEEcCCCCCCcc-ccCCchhhccCCHHHHHHH----HHHHHHHHHHHhccCcCCCEEEEEc
Q 009708 405 VKCDKVLLDAPCSGLGV-LSKRADLRWNRRLEDMEEL----KILQDELLDAASLLVKPGGVLVYST 465 (528)
Q Consensus 405 ~~fD~Vl~D~Pcsg~G~-~~~~pd~~~~~~~~~~~~l----~~~q~~lL~~a~~~LkpGG~LvysT 465 (528)
+..|.++.++-....+. .....+ .+.++.... ..-...+++.+...++.+|.+|..+
T Consensus 87 g~iD~lv~nAG~~~~~~~~~~~~~----~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~Iv~is 148 (272)
T PRK08159 87 GKLDFVVHAIGFSDKDELTGRYVD----TSRDNFTMTMDISVYSFTAVAQRAEKLMTDGGSILTLT 148 (272)
T ss_pred CCCcEEEECCcccCccccccCccc----CCHHHHHHHHhHHHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 56899998764432110 001011 122222221 1122345666677777788877554
No 381
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=85.31 E-value=8.4 Score=42.85 Aligned_cols=82 Identities=15% Similarity=-0.025 Sum_probs=54.2
Q ss_pred CCCCCCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCC-------CccEEEEcCcccccccc-
Q 009708 332 DPQPGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQV-------NSVIRTIHADLRTFADN- 402 (528)
Q Consensus 332 ~~~~g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~-------~~~i~~~~~D~~~~~~~- 402 (528)
+.+.|.+||=.|+ +|+.+.++++.+- .+.+|++++.+...+..+...+...++ ..++.++.+|+.+....
T Consensus 76 ~~~~gKvVLVTGA-TGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~ 154 (576)
T PLN03209 76 DTKDEDLAFVAGA-TGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIG 154 (576)
T ss_pred ccCCCCEEEEECC-CCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHH
Confidence 4456777777666 5788888876653 345899999999888766655543221 12478889999864321
Q ss_pred -CCCCCCEEEEcC
Q 009708 403 -STVKCDKVLLDA 414 (528)
Q Consensus 403 -~~~~fD~Vl~D~ 414 (528)
.-+..|.|++.+
T Consensus 155 ~aLggiDiVVn~A 167 (576)
T PLN03209 155 PALGNASVVICCI 167 (576)
T ss_pred HHhcCCCEEEEcc
Confidence 124689988743
No 382
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=85.31 E-value=13 Score=36.89 Aligned_cols=78 Identities=13% Similarity=-0.069 Sum_probs=48.1
Q ss_pred CCCeEEEeCCcc-chHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------C
Q 009708 335 PGQSIVDCCAAP-GGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------S 403 (528)
Q Consensus 335 ~g~~VLDl~aG~-G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~ 403 (528)
.|..+|=.|++. +|.+..+|..+- .+.+|+.++.+....+.+++..+..|. ..++..|+.+.... .
T Consensus 6 ~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~g~---~~~~~~Dv~d~~~v~~~~~~~~~~ 82 (271)
T PRK06505 6 QGKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEALGKRVKPLAESLGS---DFVLPCDVEDIASVDAVFEALEKK 82 (271)
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHHHHHHHHHHHhcCC---ceEEeCCCCCHHHHHHHHHHHHHH
Confidence 367899999886 367777776553 345788888776544444444344442 23577888764211 1
Q ss_pred CCCCCEEEEcCC
Q 009708 404 TVKCDKVLLDAP 415 (528)
Q Consensus 404 ~~~fD~Vl~D~P 415 (528)
.+..|.++.++-
T Consensus 83 ~g~iD~lVnnAG 94 (271)
T PRK06505 83 WGKLDFVVHAIG 94 (271)
T ss_pred hCCCCEEEECCc
Confidence 257898887653
No 383
>PRK10083 putative oxidoreductase; Provisional
Probab=85.29 E-value=7.3 Score=39.80 Aligned_cols=52 Identities=15% Similarity=0.073 Sum_probs=33.7
Q ss_pred HhcCCCCCCeEEEeCCccchHHHH---HHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCC
Q 009708 329 AVVDPQPGQSIVDCCAAPGGKTLY---MASCLSGQGLVYAIDINKGRLRILNETAKLHQVN 386 (528)
Q Consensus 329 ~~l~~~~g~~VLDl~aG~G~kt~~---la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~ 386 (528)
....+++|++||=.|+ |+.+.. +|+.+.+...++++|.++.+.+.++ .+|.+
T Consensus 154 ~~~~~~~g~~vlI~g~--g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~----~~Ga~ 208 (339)
T PRK10083 154 GRTGPTEQDVALIYGA--GPVGLTIVQVLKGVYNVKAVIVADRIDERLALAK----ESGAD 208 (339)
T ss_pred HhcCCCCCCEEEEECC--CHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHH----HhCCc
Confidence 3456788999888885 445444 4442213346889999998887665 35664
No 384
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=85.22 E-value=3.8 Score=41.67 Aligned_cols=88 Identities=14% Similarity=0.041 Sum_probs=52.5
Q ss_pred CCCCeEEEeCCcc-chHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEE
Q 009708 334 QPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 412 (528)
Q Consensus 334 ~~g~~VLDl~aG~-G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~ 412 (528)
.++++||=+|||+ |..++++|+.+ +...|+++|.++.+++.+... .. +. .... ....||+|+-
T Consensus 143 ~~~~~vlV~G~G~vG~~a~q~ak~~-G~~~v~~~~~~~~rl~~a~~~----~~------i~--~~~~---~~~g~Dvvid 206 (308)
T TIGR01202 143 VKVLPDLIVGHGTLGRLLARLTKAA-GGSPPAVWETNPRRRDGATGY----EV------LD--PEKD---PRRDYRAIYD 206 (308)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHHc-CCceEEEeCCCHHHHHhhhhc----cc------cC--hhhc---cCCCCCEEEE
Confidence 3577888777653 44555666654 334577889998887765431 11 11 1110 1245898773
Q ss_pred cCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEc
Q 009708 413 DAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465 (528)
Q Consensus 413 D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysT 465 (528)
|+|.. ..+..+++++++||++++.-
T Consensus 207 ---~~G~~-------------------------~~~~~~~~~l~~~G~iv~~G 231 (308)
T TIGR01202 207 ---ASGDP-------------------------SLIDTLVRRLAKGGEIVLAG 231 (308)
T ss_pred ---CCCCH-------------------------HHHHHHHHhhhcCcEEEEEe
Confidence 44411 13677889999999998543
No 385
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=85.03 E-value=3.6 Score=43.80 Aligned_cols=49 Identities=22% Similarity=0.209 Sum_probs=34.9
Q ss_pred cCCCCCCeEEEeC-Cc-cchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHH
Q 009708 331 VDPQPGQSIVDCC-AA-PGGKTLYMASCLS-GQGLVYAIDINKGRLRILNET 379 (528)
Q Consensus 331 l~~~~g~~VLDl~-aG-~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n 379 (528)
..+++|++||=.| +| -|..++++|+.++ +..+|+++|.++.+++.+++.
T Consensus 171 ~~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~ 222 (410)
T cd08238 171 MGIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRL 222 (410)
T ss_pred cCCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHh
Confidence 3567888888776 33 4555666776643 234799999999999988764
No 386
>PRK12744 short chain dehydrogenase; Provisional
Probab=85.03 E-value=13 Score=36.34 Aligned_cols=122 Identities=16% Similarity=0.035 Sum_probs=64.9
Q ss_pred CCeEEEeCCccchHHHHHHHHcCC-CcEEEEEcCC----hHHHHHHHHHHHHcCCCccEEEEcCcccccccc--------
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLSG-QGLVYAIDIN----KGRLRILNETAKLHQVNSVIRTIHADLRTFADN-------- 402 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~~-~~~v~avD~s----~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~-------- 402 (528)
+.+||=.|+ +|+.+..+++.+.. +.+|+.++.+ ....+.+.+.++..+. .+.++..|+.+....
T Consensus 8 ~k~vlItGa-~~gIG~~~a~~l~~~G~~vv~i~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~D~~~~~~~~~~~~~~~ 84 (257)
T PRK12744 8 GKVVLIAGG-AKNLGGLIARDLAAQGAKAVAIHYNSAASKADAEETVAAVKAAGA--KAVAFQADLTTAAAVEKLFDDAK 84 (257)
T ss_pred CcEEEEECC-CchHHHHHHHHHHHCCCcEEEEecCCccchHHHHHHHHHHHHhCC--cEEEEecCcCCHHHHHHHHHHHH
Confidence 557887774 66788888876643 3466666543 2334333333444342 377888998764221
Q ss_pred -CCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHH----HHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 403 -STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEEL----KILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 403 -~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l----~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
..+..|.++.++--...+.+ +..+.++..+. ..-...+++.+...++++|.+++...|
T Consensus 85 ~~~~~id~li~~ag~~~~~~~-------~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~iv~~~ss 147 (257)
T PRK12744 85 AAFGRPDIAINTVGKVLKKPI-------VEISEAEYDEMFAVNSKSAFFFIKEAGRHLNDNGKIVTLVTS 147 (257)
T ss_pred HhhCCCCEEEECCcccCCCCc-------ccCCHHHHHHHHhhhhhHHHHHHHHHHHhhccCCCEEEEecc
Confidence 12468999876532211111 11222222221 112223567777777778877765444
No 387
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=85.00 E-value=4.4 Score=42.51 Aligned_cols=131 Identities=16% Similarity=0.195 Sum_probs=81.5
Q ss_pred HHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHH-------HHHcCC-CccEEEEcCcccc
Q 009708 327 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNET-------AKLHQV-NSVIRTIHADLRT 398 (528)
Q Consensus 327 ~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n-------~~~~g~-~~~i~~~~~D~~~ 398 (528)
+++-+...+++...|+|+|-|+...+.|... +...=+|+++...--+.+..+ ++..|- .+.++.+++++..
T Consensus 184 i~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a-~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~ 262 (419)
T KOG3924|consen 184 IVDELKLGPADVFMDLGSGVGQLVCFVAAYA-GCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFLD 262 (419)
T ss_pred HHHHhccCCCCcccCCCcccchhhHHHHHhh-ccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccCC
Confidence 4555778899999999999999999888763 344567777765544444333 334454 3568888988876
Q ss_pred cccc--CCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCc-----h
Q 009708 399 FADN--STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDP-----E 471 (528)
Q Consensus 399 ~~~~--~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~-----~ 471 (528)
.... .....++|+++--- -+|+..++ +.+.++-+++|-+++ |+-++.+ +
T Consensus 263 ~~~v~eI~~eatvi~vNN~~-------Fdp~L~lr----------------~~eil~~ck~gtrIi-S~~~L~~r~rs~e 318 (419)
T KOG3924|consen 263 PKRVTEIQTEATVIFVNNVA-------FDPELKLR----------------SKEILQKCKDGTRII-SSKPLVPRPRSQE 318 (419)
T ss_pred HHHHHHHhhcceEEEEeccc-------CCHHHHHh----------------hHHHHhhCCCcceEe-ccccccccccchh
Confidence 4321 13457888876332 23433322 335566678776666 5556555 3
Q ss_pred hhHHHHHHHHh
Q 009708 472 ENEERVEAFLL 482 (528)
Q Consensus 472 Ene~~v~~~l~ 482 (528)
-+-..+..|+.
T Consensus 319 s~~~~~~df~~ 329 (419)
T KOG3924|consen 319 STSRRVSDFVA 329 (419)
T ss_pred HHHHHHHHHHh
Confidence 34445566655
No 388
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=84.95 E-value=12 Score=33.54 Aligned_cols=84 Identities=19% Similarity=0.126 Sum_probs=54.4
Q ss_pred eEEEeCCccchHHHHHHHHcC--CCcEEEEEcCC--hHHHHHHHHHHHHcCCCccEEEEcCccccccc---------cCC
Q 009708 338 SIVDCCAAPGGKTLYMASCLS--GQGLVYAIDIN--KGRLRILNETAKLHQVNSVIRTIHADLRTFAD---------NST 404 (528)
Q Consensus 338 ~VLDl~aG~G~kt~~la~~~~--~~~~v~avD~s--~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~---------~~~ 404 (528)
+||=.|++ |+.+..++..+- +...|+.+..+ ...++.+...++..+ . .+.++..|+.+... ...
T Consensus 2 ~~lItGa~-~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~-~-~~~~~~~D~~~~~~~~~~~~~~~~~~ 78 (167)
T PF00106_consen 2 TVLITGAS-SGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPG-A-KITFIECDLSDPESIRALIEEVIKRF 78 (167)
T ss_dssp EEEEETTT-SHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTT-S-EEEEEESETTSHHHHHHHHHHHHHHH
T ss_pred EEEEECCC-CHHHHHHHHHHHhcCceEEEEeeecccccccccccccccccc-c-cccccccccccccccccccccccccc
Confidence 34555555 566666665442 24578888888 777777777777666 3 48899999876421 113
Q ss_pred CCCCEEEEcCCCCCCccccC
Q 009708 405 VKCDKVLLDAPCSGLGVLSK 424 (528)
Q Consensus 405 ~~fD~Vl~D~Pcsg~G~~~~ 424 (528)
..+|.++.++.....+.+..
T Consensus 79 ~~ld~li~~ag~~~~~~~~~ 98 (167)
T PF00106_consen 79 GPLDILINNAGIFSDGSLDD 98 (167)
T ss_dssp SSESEEEEECSCTTSBSGGG
T ss_pred cccccccccccccccccccc
Confidence 57999998766655444433
No 389
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=84.88 E-value=2.5 Score=44.06 Aligned_cols=54 Identities=19% Similarity=0.117 Sum_probs=41.2
Q ss_pred hHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHH
Q 009708 323 SAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNE 378 (528)
Q Consensus 323 ~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~ 378 (528)
-+.++..+.+..+-+.|+|+|+|.|..+..++- +.+-.|+|||-|....+.+++
T Consensus 141 lselvSsi~~f~gi~~vvD~GaG~G~LSr~lSl--~y~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 141 LSELVSSISDFTGIDQVVDVGAGQGHLSRFLSL--GYGLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred HHHHHHHHHhhcCCCeeEEcCCCchHHHHHHhh--ccCceEEEeccchHHHHHHHH
Confidence 345566665656667899999999999998875 456799999999766665554
No 390
>PRK08862 short chain dehydrogenase; Provisional
Probab=84.85 E-value=19 Score=34.76 Aligned_cols=76 Identities=9% Similarity=-0.056 Sum_probs=49.7
Q ss_pred CCeEEEeCCccchHHHHHHHHc-CCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CCC
Q 009708 336 GQSIVDCCAAPGGKTLYMASCL-SGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 405 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~-~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~~ 405 (528)
|..+|=.|++.| .+..++..+ ..+.+|+.++.++..++.+.+.++..+.+ +..+..|..+.... .-+
T Consensus 5 ~k~~lVtGas~G-IG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~~~--~~~~~~D~~~~~~~~~~~~~~~~~~g 81 (227)
T PRK08862 5 SSIILITSAGSV-LGRTISCHFARLGATLILCDQDQSALKDTYEQCSALTDN--VYSFQLKDFSQESIRHLFDAIEQQFN 81 (227)
T ss_pred CeEEEEECCccH-HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCC--eEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 567887777764 455555443 34568999999999988877777665533 45566676553210 113
Q ss_pred -CCCEEEEcC
Q 009708 406 -KCDKVLLDA 414 (528)
Q Consensus 406 -~fD~Vl~D~ 414 (528)
.+|.++.++
T Consensus 82 ~~iD~li~na 91 (227)
T PRK08862 82 RAPDVLVNNW 91 (227)
T ss_pred CCCCEEEECC
Confidence 789988875
No 391
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=84.78 E-value=7.2 Score=39.84 Aligned_cols=98 Identities=21% Similarity=0.299 Sum_probs=56.1
Q ss_pred CCCCCCeEEEeCCcc-chHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEE
Q 009708 332 DPQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKV 410 (528)
Q Consensus 332 ~~~~g~~VLDl~aG~-G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~V 410 (528)
...+|++||-.++|. |..+.++|+.++ ..+|++++.++...+.++ ..|.+..+.....+...... ....+|+|
T Consensus 162 ~~~~~~~VLI~g~g~vG~~~~~lak~~G-~~~v~~~~~s~~~~~~~~----~~g~~~vi~~~~~~~~~~~~-~~~~vd~v 235 (339)
T cd08232 162 GDLAGKRVLVTGAGPIGALVVAAARRAG-AAEIVATDLADAPLAVAR----AMGADETVNLARDPLAAYAA-DKGDFDVV 235 (339)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEECCCHHHHHHHH----HcCCCEEEcCCchhhhhhhc-cCCCccEE
Confidence 334788898887664 556667777642 237899999988877543 34554211111111111111 12358988
Q ss_pred EEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEE
Q 009708 411 LLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463 (528)
Q Consensus 411 l~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvy 463 (528)
+- |.|.+ ..+..+++.|+++|+++-
T Consensus 236 ld---~~g~~-------------------------~~~~~~~~~L~~~G~~v~ 260 (339)
T cd08232 236 FE---ASGAP-------------------------AALASALRVVRPGGTVVQ 260 (339)
T ss_pred EE---CCCCH-------------------------HHHHHHHHHHhcCCEEEE
Confidence 74 33311 125667888899999874
No 392
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=84.69 E-value=13 Score=36.29 Aligned_cols=80 Identities=14% Similarity=0.027 Sum_probs=50.3
Q ss_pred CCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CCC
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 405 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~~ 405 (528)
+.+||=.|+ +|+.+.+++..+. .+.+|+.+|.+...++.+...++...-...+.++..|+.+.... ..+
T Consensus 2 ~k~ilItG~-~~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~ 80 (259)
T PRK12384 2 NQVAVVIGG-GQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEIFG 80 (259)
T ss_pred CCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 346787885 5677777776553 34589999999887766655444321112377888888763211 014
Q ss_pred CCCEEEEcCCC
Q 009708 406 KCDKVLLDAPC 416 (528)
Q Consensus 406 ~fD~Vl~D~Pc 416 (528)
..|.|+..+-.
T Consensus 81 ~id~vv~~ag~ 91 (259)
T PRK12384 81 RVDLLVYNAGI 91 (259)
T ss_pred CCCEEEECCCc
Confidence 68999887644
No 393
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=84.66 E-value=16 Score=36.03 Aligned_cols=125 Identities=14% Similarity=0.017 Sum_probs=63.3
Q ss_pred CCCeEEEeCCccc-hHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccc---------cC
Q 009708 335 PGQSIVDCCAAPG-GKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD---------NS 403 (528)
Q Consensus 335 ~g~~VLDl~aG~G-~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~---------~~ 403 (528)
.|..+|=.|++.| |.+..+++.+. .+.+|+.++.++...+.+++..+..|. ..++..|+.+... ..
T Consensus 7 ~~k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~~~~~~~~~~l~~~~g~---~~~~~~Dv~~~~~v~~~~~~~~~~ 83 (260)
T PRK06603 7 QGKKGLITGIANNMSISWAIAQLAKKHGAELWFTYQSEVLEKRVKPLAEEIGC---NFVSELDVTNPKSISNLFDDIKEK 83 (260)
T ss_pred CCcEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCchHHHHHHHHHHHhcCC---ceEEEccCCCHHHHHHHHHHHHHH
Confidence 3567888888775 66666665543 345788878774333334443333332 2345678876421 11
Q ss_pred CCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHH----HHHHHHHHHHhccCcCCCEEEEEc
Q 009708 404 TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELK----ILQDELLDAASLLVKPGGVLVYST 465 (528)
Q Consensus 404 ~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~----~~q~~lL~~a~~~LkpGG~LvysT 465 (528)
.+.+|.++.++-........ .+ .+..+.++..+.. .-...+++.+...++.+|.+|..+
T Consensus 84 ~g~iDilVnnag~~~~~~~~-~~--~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~m~~~G~Iv~is 146 (260)
T PRK06603 84 WGSFDFLLHGMAFADKNELK-GR--YVDTSLENFHNSLHISCYSLLELSRSAEALMHDGGSIVTLT 146 (260)
T ss_pred cCCccEEEEccccCCccccc-Cc--cccCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEEEe
Confidence 25689888765432110000 00 1112223332221 122234566666677788877543
No 394
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=84.64 E-value=16 Score=35.32 Aligned_cols=78 Identities=10% Similarity=-0.003 Sum_probs=48.5
Q ss_pred CCeEEEeCCccchHHHHHHHHcCCC-cEEEE-EcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CC
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLSGQ-GLVYA-IDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 404 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~~~-~~v~a-vD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~ 404 (528)
+.+||=.|+ +|+.+.+++..+... .+|+. .+.+....+.+.+.++..+. .+.++.+|+.+.... ..
T Consensus 4 ~~~vlItGa-~g~iG~~~a~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (250)
T PRK08063 4 GKVALVTGS-SRGIGKAIALRLAEEGYDIAVNYARSRKAAEETAEEIEALGR--KALAVKANVGDVEKIKEMFAQIDEEF 80 (250)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCC--eEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 557776666 477788877766433 36665 45666666655555555442 367788888764311 01
Q ss_pred CCCCEEEEcCCC
Q 009708 405 VKCDKVLLDAPC 416 (528)
Q Consensus 405 ~~fD~Vl~D~Pc 416 (528)
+..|.|+.++..
T Consensus 81 ~~id~vi~~ag~ 92 (250)
T PRK08063 81 GRLDVFVNNAAS 92 (250)
T ss_pred CCCCEEEECCCC
Confidence 368999987654
No 395
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=84.51 E-value=6 Score=40.59 Aligned_cols=100 Identities=19% Similarity=0.178 Sum_probs=60.7
Q ss_pred hcCCCCCCeEEEeCC--ccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcC-ccccc-cccCCC
Q 009708 330 VVDPQPGQSIVDCCA--APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHA-DLRTF-ADNSTV 405 (528)
Q Consensus 330 ~l~~~~g~~VLDl~a--G~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~-D~~~~-~~~~~~ 405 (528)
...+++|++||=.|+ |-|..++++|+.+ +.+|++++.++++.+.+++. +|.+..+..... |.... ......
T Consensus 146 ~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~--G~~Vi~~~~~~~~~~~~~~~---lGa~~vi~~~~~~~~~~~i~~~~~~ 220 (338)
T cd08295 146 VCKPKKGETVFVSAASGAVGQLVGQLAKLK--GCYVVGSAGSDEKVDLLKNK---LGFDDAFNYKEEPDLDAALKRYFPN 220 (338)
T ss_pred hcCCCCCCEEEEecCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHh---cCCceeEEcCCcccHHHHHHHhCCC
Confidence 456788999998876 4455667777764 35799999888887766542 566532221111 22111 111124
Q ss_pred CCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEE
Q 009708 406 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463 (528)
Q Consensus 406 ~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvy 463 (528)
.+|.|+ | |.|. ..+..+++.|+++|+++.
T Consensus 221 gvd~v~-d--~~g~--------------------------~~~~~~~~~l~~~G~iv~ 249 (338)
T cd08295 221 GIDIYF-D--NVGG--------------------------KMLDAVLLNMNLHGRIAA 249 (338)
T ss_pred CcEEEE-E--CCCH--------------------------HHHHHHHHHhccCcEEEE
Confidence 688886 4 3331 126677888999999884
No 396
>PLN02740 Alcohol dehydrogenase-like
Probab=84.47 E-value=8.1 Score=40.55 Aligned_cols=102 Identities=20% Similarity=0.216 Sum_probs=58.3
Q ss_pred hcCCCCCCeEEEeCCcc-chHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcC--cccc-ccccCCC
Q 009708 330 VVDPQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHA--DLRT-FADNSTV 405 (528)
Q Consensus 330 ~l~~~~g~~VLDl~aG~-G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~--D~~~-~~~~~~~ 405 (528)
...+++|++||=.|+|+ |..++++|+.+ +..+|+++|.++.+++.++ .+|.+..+..... |... +......
T Consensus 193 ~~~~~~g~~VlV~G~G~vG~~a~q~ak~~-G~~~Vi~~~~~~~r~~~a~----~~Ga~~~i~~~~~~~~~~~~v~~~~~~ 267 (381)
T PLN02740 193 TANVQAGSSVAIFGLGAVGLAVAEGARAR-GASKIIGVDINPEKFEKGK----EMGITDFINPKDSDKPVHERIREMTGG 267 (381)
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHHHC-CCCcEEEEcCChHHHHHHH----HcCCcEEEecccccchHHHHHHHHhCC
Confidence 35678899999888643 22334455543 2236999999999988774 3676532221110 1111 1111122
Q ss_pred CCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCC-CEEEEE
Q 009708 406 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPG-GVLVYS 464 (528)
Q Consensus 406 ~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpG-G~Lvys 464 (528)
.+|+|+- |+|.. ..+..++..+++| |+++..
T Consensus 268 g~dvvid---~~G~~-------------------------~~~~~a~~~~~~g~G~~v~~ 299 (381)
T PLN02740 268 GVDYSFE---CAGNV-------------------------EVLREAFLSTHDGWGLTVLL 299 (381)
T ss_pred CCCEEEE---CCCCh-------------------------HHHHHHHHhhhcCCCEEEEE
Confidence 6898763 44421 1367778888886 887653
No 397
>PRK06701 short chain dehydrogenase; Provisional
Probab=84.44 E-value=16 Score=36.73 Aligned_cols=126 Identities=11% Similarity=0.020 Sum_probs=66.6
Q ss_pred CCCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCCh-HHHHHHHHHHHHcCCCccEEEEcCcccccccc---------C
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINK-GRLRILNETAKLHQVNSVIRTIHADLRTFADN---------S 403 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~-~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~ 403 (528)
.+.+||=.|+ +|+.+..++..+- .+.+|+.++.++ ..++.....++..+. .+.++.+|+.+.... .
T Consensus 45 ~~k~iLItGa-sggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~~~~~~~~i~~~ 121 (290)
T PRK06701 45 KGKVALITGG-DSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEGV--KCLLIPGDVSDEAFCKDAVEETVRE 121 (290)
T ss_pred CCCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCC--eEEEEEccCCCHHHHHHHHHHHHHH
Confidence 3667888886 4566777666553 346788888775 334444444544443 367888888763211 0
Q ss_pred CCCCCEEEEcCCCCCC-ccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcC
Q 009708 404 TVKCDKVLLDAPCSGL-GVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTC 466 (528)
Q Consensus 404 ~~~fD~Vl~D~Pcsg~-G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTc 466 (528)
...+|.|+.++-.+.. +.+...+.-.|. ..+..-..-...+++.+...++++|.+|+.+-
T Consensus 122 ~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~---~~~~~N~~~~~~l~~a~~~~~~~~g~iV~isS 182 (290)
T PRK06701 122 LGRLDILVNNAAFQYPQQSLEDITAEQLD---KTFKTNIYSYFHMTKAALPHLKQGSAIINTGS 182 (290)
T ss_pred cCCCCEEEECCcccCCCCCcccCCHHHHH---HHHhhhhHHHHHHHHHHHHHHhhCCeEEEEec
Confidence 1468999876543211 111111110111 11111122233456666666677788887553
No 398
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=84.40 E-value=8.4 Score=39.52 Aligned_cols=103 Identities=23% Similarity=0.341 Sum_probs=59.5
Q ss_pred HhcCCCCCCeEEEeCCcc-chHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcc----cccccc-
Q 009708 329 AVVDPQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADL----RTFADN- 402 (528)
Q Consensus 329 ~~l~~~~g~~VLDl~aG~-G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~----~~~~~~- 402 (528)
.....++|++||-.|+|. |..++++|+.++ ...|++++.+++..+.+++ .|.+..+.....+. ..+...
T Consensus 156 ~~~~~~~g~~vlI~g~g~vG~~a~~lak~~G-~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~~~~~~~ 230 (343)
T cd05285 156 RRAGVRPGDTVLVFGAGPIGLLTAAVAKAFG-ATKVVVTDIDPSRLEFAKE----LGATHTVNVRTEDTPESAEKIAELL 230 (343)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEECCCHHHHHHHHH----cCCcEEeccccccchhHHHHHHHHh
Confidence 455678899988876654 455566666643 2238999988888776643 36543221111111 111111
Q ss_pred CCCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 403 STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 403 ~~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
....+|+|+- |+|.. ..+..+++.++++|+++..
T Consensus 231 ~~~~~d~vld---~~g~~-------------------------~~~~~~~~~l~~~G~~v~~ 264 (343)
T cd05285 231 GGKGPDVVIE---CTGAE-------------------------SCIQTAIYATRPGGTVVLV 264 (343)
T ss_pred CCCCCCEEEE---CCCCH-------------------------HHHHHHHHHhhcCCEEEEE
Confidence 1245898874 43311 1366778889999998743
No 399
>PRK07677 short chain dehydrogenase; Provisional
Probab=84.32 E-value=17 Score=35.41 Aligned_cols=78 Identities=15% Similarity=0.118 Sum_probs=50.1
Q ss_pred CCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CCC
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 405 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~~ 405 (528)
|.++|=.|++ |+.+..+++.+. .+.+|+.++.++..++.+...+...+ ..+.++..|+.+.... ..+
T Consensus 1 ~k~~lItG~s-~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 77 (252)
T PRK07677 1 EKVVIITGGS-SGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFP--GQVLTVQMDVRNPEDVQKMVEQIDEKFG 77 (252)
T ss_pred CCEEEEeCCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHHhC
Confidence 3467766664 556666665443 34589999999888877766665544 2477888888653211 024
Q ss_pred CCCEEEEcCCC
Q 009708 406 KCDKVLLDAPC 416 (528)
Q Consensus 406 ~fD~Vl~D~Pc 416 (528)
..|.|+.++..
T Consensus 78 ~id~lI~~ag~ 88 (252)
T PRK07677 78 RIDALINNAAG 88 (252)
T ss_pred CccEEEECCCC
Confidence 68999887543
No 400
>PRK08589 short chain dehydrogenase; Validated
Probab=84.23 E-value=19 Score=35.71 Aligned_cols=77 Identities=18% Similarity=0.116 Sum_probs=48.9
Q ss_pred CCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CCC
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 405 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~~ 405 (528)
|.++|=.|++ |+.+..++..+- .+.+|+.++.+ ..++.+.+.++..+. .+.++..|+.+.... ..+
T Consensus 6 ~k~vlItGas-~gIG~aia~~l~~~G~~vi~~~r~-~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~~~g 81 (272)
T PRK08589 6 NKVAVITGAS-TGIGQASAIALAQEGAYVLAVDIA-EAVSETVDKIKSNGG--KAKAYHVDISDEQQVKDFASEIKEQFG 81 (272)
T ss_pred CCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCc-HHHHHHHHHHHhcCC--eEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence 5677766665 566776666543 35689999998 566555555554442 367788888764211 124
Q ss_pred CCCEEEEcCCC
Q 009708 406 KCDKVLLDAPC 416 (528)
Q Consensus 406 ~fD~Vl~D~Pc 416 (528)
..|.++.++-.
T Consensus 82 ~id~li~~Ag~ 92 (272)
T PRK08589 82 RVDVLFNNAGV 92 (272)
T ss_pred CcCEEEECCCC
Confidence 68999987654
No 401
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=84.23 E-value=5.7 Score=41.00 Aligned_cols=110 Identities=19% Similarity=0.234 Sum_probs=69.5
Q ss_pred HHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcC-ccccccccC-
Q 009708 326 LVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHA-DLRTFADNS- 403 (528)
Q Consensus 326 l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~-D~~~~~~~~- 403 (528)
.+...+++++|++|.=.|||-=|.+......+-+.++|+|+|+++.+++.++ .+|..+.+..... |+.+.....
T Consensus 176 av~nta~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~----~fGAT~~vn~~~~~~vv~~i~~~T 251 (366)
T COG1062 176 AVVNTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAK----KFGATHFVNPKEVDDVVEAIVELT 251 (366)
T ss_pred HhhhcccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHH----hcCCceeecchhhhhHHHHHHHhc
Confidence 3456678899999999998865555444444566889999999999998875 4576542222111 222221111
Q ss_pred CCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 404 TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 404 ~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
+...|.+|- |.| . .+.+++++..+.++|..+..--.
T Consensus 252 ~gG~d~~~e---~~G--~-----------------------~~~~~~al~~~~~~G~~v~iGv~ 287 (366)
T COG1062 252 DGGADYAFE---CVG--N-----------------------VEVMRQALEATHRGGTSVIIGVA 287 (366)
T ss_pred CCCCCEEEE---ccC--C-----------------------HHHHHHHHHHHhcCCeEEEEecC
Confidence 235777753 433 1 11378888888889998865443
No 402
>PRK08643 acetoin reductase; Validated
Probab=84.17 E-value=24 Score=34.29 Aligned_cols=77 Identities=14% Similarity=0.030 Sum_probs=51.1
Q ss_pred CCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CCC
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 405 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~~ 405 (528)
+.++|=.| |+|+.+.++++.+- .+.+|+.++.++..++.+...+...+. .+.++.+|+.+.... ..+
T Consensus 2 ~k~~lItG-as~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 78 (256)
T PRK08643 2 SKVALVTG-AGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDGG--KAIAVKADVSDRDQVFAAVRQVVDTFG 78 (256)
T ss_pred CCEEEEEC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--eEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 34566555 55667777776553 345899999998888877777665543 367788888764210 124
Q ss_pred CCCEEEEcCC
Q 009708 406 KCDKVLLDAP 415 (528)
Q Consensus 406 ~fD~Vl~D~P 415 (528)
+.|.|+.++.
T Consensus 79 ~id~vi~~ag 88 (256)
T PRK08643 79 DLNVVVNNAG 88 (256)
T ss_pred CCCEEEECCC
Confidence 6899988653
No 403
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=84.04 E-value=11 Score=36.91 Aligned_cols=76 Identities=14% Similarity=0.006 Sum_probs=47.3
Q ss_pred CCCeEEEeCCcc-chHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------C
Q 009708 335 PGQSIVDCCAAP-GGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------S 403 (528)
Q Consensus 335 ~g~~VLDl~aG~-G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~ 403 (528)
.|.++|-.|++. +|.+..+++.+- .+.+|+.++.+....+.+ +...-. .+.++..|+.+.... .
T Consensus 6 ~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~~~~~~~----~~~~~~-~~~~~~~Dl~~~~~v~~~~~~~~~~ 80 (252)
T PRK06079 6 SGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQNDRMKKSL----QKLVDE-EDLLVECDVASDESIERAFATIKER 80 (252)
T ss_pred CCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCchHHHHHH----HhhccC-ceeEEeCCCCCHHHHHHHHHHHHHH
Confidence 367899999885 677877777663 355888888774322222 222112 367788898763211 1
Q ss_pred CCCCCEEEEcCC
Q 009708 404 TVKCDKVLLDAP 415 (528)
Q Consensus 404 ~~~fD~Vl~D~P 415 (528)
.+.+|.++.++-
T Consensus 81 ~g~iD~lv~nAg 92 (252)
T PRK06079 81 VGKIDGIVHAIA 92 (252)
T ss_pred hCCCCEEEEccc
Confidence 256899988764
No 404
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=83.95 E-value=17 Score=34.79 Aligned_cols=78 Identities=18% Similarity=0.068 Sum_probs=51.5
Q ss_pred CCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CCC
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 405 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~~ 405 (528)
+.+||=.|+ +|+.+..+++.+. .+.+|+.++.++...+.....++..+. .+.++.+|+.+.... .-.
T Consensus 5 ~~~ilItGa-sg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (246)
T PRK05653 5 GKTALVTGA-SRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRAAGG--EARVLVFDVSDEAAVRALIEAAVEAFG 81 (246)
T ss_pred CCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHHhcCC--ceEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 457887775 7888888876653 234799999998887766665555443 367778888753210 013
Q ss_pred CCCEEEEcCCC
Q 009708 406 KCDKVLLDAPC 416 (528)
Q Consensus 406 ~fD~Vl~D~Pc 416 (528)
..|.|+..+-.
T Consensus 82 ~id~vi~~ag~ 92 (246)
T PRK05653 82 ALDILVNNAGI 92 (246)
T ss_pred CCCEEEECCCc
Confidence 57988876543
No 405
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=83.66 E-value=9.4 Score=37.55 Aligned_cols=122 Identities=14% Similarity=0.069 Sum_probs=65.6
Q ss_pred CCCeEEEeCCc-cchHHHHHHHHcC-CCcEEEEEcCCh--HHHHHHHHHHHHcCCCccEEEEcCccccccc---------
Q 009708 335 PGQSIVDCCAA-PGGKTLYMASCLS-GQGLVYAIDINK--GRLRILNETAKLHQVNSVIRTIHADLRTFAD--------- 401 (528)
Q Consensus 335 ~g~~VLDl~aG-~G~kt~~la~~~~-~~~~v~avD~s~--~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~--------- 401 (528)
.+.++|=.|+| ++|.+..+++.+. .+.+|+.++.+. +.++.+.+ ..+- .+.++..|+.+...
T Consensus 6 ~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~---~~~~--~~~~~~~Dv~~~~~i~~~~~~~~ 80 (256)
T PRK07889 6 EGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRALRLTERIAK---RLPE--PAPVLELDVTNEEHLASLADRVR 80 (256)
T ss_pred cCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccchhHHHHHHH---hcCC--CCcEEeCCCCCHHHHHHHHHHHH
Confidence 36789999986 6888888887654 345888888663 33333322 2222 25567788876421
Q ss_pred cCCCCCCEEEEcCCCCCCccc-cCCchhhccCCHHHHHH----HHHHHHHHHHHHhccCcCCCEEEEEc
Q 009708 402 NSTVKCDKVLLDAPCSGLGVL-SKRADLRWNRRLEDMEE----LKILQDELLDAASLLVKPGGVLVYST 465 (528)
Q Consensus 402 ~~~~~fD~Vl~D~Pcsg~G~~-~~~pd~~~~~~~~~~~~----l~~~q~~lL~~a~~~LkpGG~LvysT 465 (528)
...+.+|.++.++-......+ ....+ .+.++..+ ...-...+.+.+...++++|.+|..+
T Consensus 81 ~~~g~iD~li~nAG~~~~~~~~~~~~~----~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~g~Iv~is 145 (256)
T PRK07889 81 EHVDGLDGVVHSIGFAPQSALGGNFLD----APWEDVATALHVSAYSLKSLAKALLPLMNEGGSIVGLD 145 (256)
T ss_pred HHcCCCcEEEEccccccccccCCCccc----CCHHHHHHHHHHHhHHHHHHHHHHHHhcccCceEEEEe
Confidence 112579998886533211000 00011 11222221 11122235566677777888887644
No 406
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=83.54 E-value=2.3 Score=38.42 Aligned_cols=53 Identities=21% Similarity=0.228 Sum_probs=33.2
Q ss_pred EeCCccc--hHHHHHH-HHcCCCcEEEEEcCChHHHHHHHHH--HHHcCCCccEEEEc
Q 009708 341 DCCAAPG--GKTLYMA-SCLSGQGLVYAIDINKGRLRILNET--AKLHQVNSVIRTIH 393 (528)
Q Consensus 341 Dl~aG~G--~kt~~la-~~~~~~~~v~avD~s~~~l~~~~~n--~~~~g~~~~i~~~~ 393 (528)
|+||..| ..+..++ +.....++|+++|.+|..++.++.| +..+...+.+++..
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~~~~~~~~~~ 58 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALNDKDGEVEFHP 58 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHTTTSTTGGEEE
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhcCCCceEEEEE
Confidence 8999999 6666554 2445678999999999999999999 66554332244443
No 407
>PRK06500 short chain dehydrogenase; Provisional
Probab=83.51 E-value=20 Score=34.46 Aligned_cols=75 Identities=17% Similarity=0.108 Sum_probs=46.1
Q ss_pred CCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccc---------cCCC
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD---------NSTV 405 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~---------~~~~ 405 (528)
+.+||=.|+ +|+.+.++++.+. .+.+|+.++.++..++.+.+. .+. .+.++..|..+... ...+
T Consensus 6 ~k~vlItGa-sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~---~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~~ 79 (249)
T PRK06500 6 GKTALITGG-TSGIGLETARQFLAEGARVAITGRDPASLEAARAE---LGE--SALVIRADAGDVAAQKALAQALAEAFG 79 (249)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHH---hCC--ceEEEEecCCCHHHHHHHHHHHHHHhC
Confidence 556666665 4677777776553 345899999987766544332 232 36677778765321 1124
Q ss_pred CCCEEEEcCCC
Q 009708 406 KCDKVLLDAPC 416 (528)
Q Consensus 406 ~fD~Vl~D~Pc 416 (528)
.+|.|+.++..
T Consensus 80 ~id~vi~~ag~ 90 (249)
T PRK06500 80 RLDAVFINAGV 90 (249)
T ss_pred CCCEEEECCCC
Confidence 68999987654
No 408
>PRK12746 short chain dehydrogenase; Provisional
Probab=83.46 E-value=16 Score=35.39 Aligned_cols=125 Identities=18% Similarity=0.126 Sum_probs=64.3
Q ss_pred CCeEEEeCCccchHHHHHHHHcCCCc-EEEEE-cCChHHHHHHHHHHHHcCCCccEEEEcCccccccccC----------
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLSGQG-LVYAI-DINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS---------- 403 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~~~~-~v~av-D~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~---------- 403 (528)
+.+||=.|+ +|+.+.++++.+-..| .|+.+ ..+...++.....+...+ ..+.++..|+.+.....
T Consensus 6 ~~~ilItGa-sg~iG~~la~~l~~~G~~v~i~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~d~~~i~~~~~~~~~~~ 82 (254)
T PRK12746 6 GKVALVTGA-SRGIGRAIAMRLANDGALVAIHYGRNKQAADETIREIESNG--GKAFLIEADLNSIDGVKKLVEQLKNEL 82 (254)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC--CcEEEEEcCcCCHHHHHHHHHHHHHHh
Confidence 457886774 6888988887664334 55443 455555444433333322 23778888987643210
Q ss_pred -----CCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcC
Q 009708 404 -----TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTC 466 (528)
Q Consensus 404 -----~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTc 466 (528)
....|.|+..+-....+.+...+...|. ..+.........+++.+...++..|.+|+.+.
T Consensus 83 ~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~---~~~~~n~~~~~~l~~~~~~~~~~~~~~v~~sS 147 (254)
T PRK12746 83 QIRVGTSEIDILVNNAGIGTQGTIENTTEEIFD---EIMAVNIKAPFFLIQQTLPLLRAEGRVINISS 147 (254)
T ss_pred ccccCCCCccEEEECCCCCCCCChhhCCHHHHH---HHHHHHhHHHHHHHHHHHHHhhcCCEEEEECC
Confidence 1358999876533222222111111111 11112222333456666666666777776543
No 409
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=83.20 E-value=6.4 Score=40.28 Aligned_cols=100 Identities=24% Similarity=0.354 Sum_probs=57.3
Q ss_pred cCCCCCCeEEEeCCcc-chHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccc-cc-cCCCCC
Q 009708 331 VDPQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF-AD-NSTVKC 407 (528)
Q Consensus 331 l~~~~g~~VLDl~aG~-G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~-~~-~~~~~f 407 (528)
...++|++||-.|+|. |..++++|+.++ ...|++++.++.+.+.+++ .|.+..+.....+.... .. .....+
T Consensus 163 ~~~~~~~~VlI~g~g~vg~~~iqlak~~g-~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~i~~~~~~~~~ 237 (347)
T cd05278 163 AGIKPGSTVAVIGAGPVGLCAVAGARLLG-AARIIAVDSNPERLDLAKE----AGATDIINPKNGDIVEQILELTGGRGV 237 (347)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEeCCHHHHHHHHH----hCCcEEEcCCcchHHHHHHHHcCCCCC
Confidence 3466788998876642 555667777643 2478899888877766553 45432122112222111 11 112468
Q ss_pred CEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEE
Q 009708 408 DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463 (528)
Q Consensus 408 D~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvy 463 (528)
|+|+- |.+.+ ..+..+++.|+++|+++.
T Consensus 238 d~vld---~~g~~-------------------------~~~~~~~~~l~~~G~~v~ 265 (347)
T cd05278 238 DCVIE---AVGFE-------------------------ETFEQAVKVVRPGGTIAN 265 (347)
T ss_pred cEEEE---ccCCH-------------------------HHHHHHHHHhhcCCEEEE
Confidence 98873 32211 136777888999998873
No 410
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=83.14 E-value=27 Score=33.66 Aligned_cols=77 Identities=16% Similarity=0.061 Sum_probs=51.0
Q ss_pred eEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccc---------cCCCCC
Q 009708 338 SIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD---------NSTVKC 407 (528)
Q Consensus 338 ~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~---------~~~~~f 407 (528)
+||=.| |+|+.+..++..+- .+.+|++++.++...+.+...+...+. .+.++.+|+.+... ......
T Consensus 3 ~vlItG-a~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~~~~ 79 (255)
T TIGR01963 3 TALVTG-AASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDAGG--SVIYLVADVTKEDEIADMIAAAAAEFGGL 79 (255)
T ss_pred EEEEcC-CcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--ceEEEECCCCCHHHHHHHHHHHHHhcCCC
Confidence 455555 55778887776553 345899999998888777666555442 37788888876431 112458
Q ss_pred CEEEEcCCCC
Q 009708 408 DKVLLDAPCS 417 (528)
Q Consensus 408 D~Vl~D~Pcs 417 (528)
|.|+..+-..
T Consensus 80 d~vi~~a~~~ 89 (255)
T TIGR01963 80 DILVNNAGIQ 89 (255)
T ss_pred CEEEECCCCC
Confidence 9999876443
No 411
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=82.93 E-value=17 Score=35.42 Aligned_cols=75 Identities=16% Similarity=0.064 Sum_probs=48.1
Q ss_pred CCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CCC
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 405 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~~ 405 (528)
+.+||=.| |+|+.+.++++.+- .+.+|+.+|.+...++.+.... + ..+.++..|+.+.... ..+
T Consensus 6 ~~~vlItG-as~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~---~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 79 (257)
T PRK07067 6 GKVALLTG-AASGIGEAVAERYLAEGARVVIADIKPARARLAALEI---G--PAAIAVSLDVTRQDSIDRIVAAAVERFG 79 (257)
T ss_pred CCEEEEeC-CCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHh---C--CceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 45677666 55777888877653 3458999999988776554432 2 2367788888653221 124
Q ss_pred CCCEEEEcCCC
Q 009708 406 KCDKVLLDAPC 416 (528)
Q Consensus 406 ~fD~Vl~D~Pc 416 (528)
..|.++..+..
T Consensus 80 ~id~li~~ag~ 90 (257)
T PRK07067 80 GIDILFNNAAL 90 (257)
T ss_pred CCCEEEECCCc
Confidence 68988876544
No 412
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=82.82 E-value=3.9 Score=40.47 Aligned_cols=71 Identities=17% Similarity=0.181 Sum_probs=39.1
Q ss_pred eCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccC---CCCCCEEEEcCCC
Q 009708 342 CCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS---TVKCDKVLLDAPC 416 (528)
Q Consensus 342 l~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~---~~~fD~Vl~D~Pc 416 (528)
+...||+=.+.. ..+..+-+++.+|+.+.-.+.+++|+... .++.+.+.|........ ..+=-+|++|||+
T Consensus 62 l~~YPGSP~ia~-~llR~qDrl~l~ELHp~d~~~L~~~~~~~---~~v~v~~~DG~~~l~allPP~~rRglVLIDPpY 135 (245)
T PF04378_consen 62 LRFYPGSPAIAA-RLLREQDRLVLFELHPQDFEALKKNFRRD---RRVRVHHRDGYEGLKALLPPPERRGLVLIDPPY 135 (245)
T ss_dssp --EEE-HHHHHH-HHS-TTSEEEEE--SHHHHHHHTTS--TT---S-EEEE-S-HHHHHHHH-S-TTS-EEEEE----
T ss_pred cCcCCCCHHHHH-HhCCccceEEEEecCchHHHHHHHHhccC---CccEEEeCchhhhhhhhCCCCCCCeEEEECCCC
Confidence 556777654433 34466789999999999999999988752 35899999997743211 2344689999999
No 413
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=82.66 E-value=3.6 Score=35.07 Aligned_cols=64 Identities=23% Similarity=0.168 Sum_probs=44.3
Q ss_pred CccchHHHHHHHHcCCCc-EEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---CCCCCCEEEEcCC
Q 009708 344 AAPGGKTLYMASCLSGQG-LVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---STVKCDKVLLDAP 415 (528)
Q Consensus 344 aG~G~kt~~la~~~~~~~-~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---~~~~fD~Vl~D~P 415 (528)
||.|..+..+++.+...+ .|+.+|.+++.++.+++ .| +.++.+|..+.... .-...|.|++..+
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~----~~----~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~ 71 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELRE----EG----VEVIYGDATDPEVLERAGIEKADAVVILTD 71 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH----TT----SEEEES-TTSHHHHHHTTGGCESEEEEESS
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHh----cc----cccccccchhhhHHhhcCccccCEEEEccC
Confidence 567778888888776666 89999999999877654 23 45788998875321 1356888887433
No 414
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=82.64 E-value=8.4 Score=39.83 Aligned_cols=102 Identities=23% Similarity=0.233 Sum_probs=63.7
Q ss_pred cCCCCCCeEEEeCCc--cchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccC--CCC
Q 009708 331 VDPQPGQSIVDCCAA--PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS--TVK 406 (528)
Q Consensus 331 l~~~~g~~VLDl~aG--~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~--~~~ 406 (528)
...++|++||=.|++ -|..++++|+.++ ..++++--+++..+ .++.+|.+..+.....|+.+-.... ...
T Consensus 138 ~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G--~~~v~~~~s~~k~~----~~~~lGAd~vi~y~~~~~~~~v~~~t~g~g 211 (326)
T COG0604 138 AGLKPGETVLVHGAAGGVGSAAIQLAKALG--ATVVAVVSSSEKLE----LLKELGADHVINYREEDFVEQVRELTGGKG 211 (326)
T ss_pred cCCCCCCEEEEecCCchHHHHHHHHHHHcC--CcEEEEecCHHHHH----HHHhcCCCEEEcCCcccHHHHHHHHcCCCC
Confidence 456789999988854 4557778888753 26666666665554 3556787754544444544332211 246
Q ss_pred CCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 407 CDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 407 fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
+|.|+- +-- ...+......|+++|+++.....
T Consensus 212 vDvv~D-~vG----------------------------~~~~~~~l~~l~~~G~lv~ig~~ 243 (326)
T COG0604 212 VDVVLD-TVG----------------------------GDTFAASLAALAPGGRLVSIGAL 243 (326)
T ss_pred ceEEEE-CCC----------------------------HHHHHHHHHHhccCCEEEEEecC
Confidence 998873 221 12366678889999999976554
No 415
>PRK07102 short chain dehydrogenase; Provisional
Probab=82.59 E-value=22 Score=34.29 Aligned_cols=77 Identities=17% Similarity=0.100 Sum_probs=50.8
Q ss_pred eEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc------CCCCCCEE
Q 009708 338 SIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN------STVKCDKV 410 (528)
Q Consensus 338 ~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~------~~~~fD~V 410 (528)
+||=.| |+|+.+..++..+- .+.+|++++.++...+...+.+...+-. ++.++.+|..+.... ....+|.|
T Consensus 3 ~vlItG-as~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~d~v 80 (243)
T PRK07102 3 KILIIG-ATSDIARACARRYAAAGARLYLAARDVERLERLADDLRARGAV-AVSTHELDILDTASHAAFLDSLPALPDIV 80 (243)
T ss_pred EEEEEc-CCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhcCC-eEEEEecCCCChHHHHHHHHHHhhcCCEE
Confidence 567666 45778877777653 3458999999998877665555443323 478889998764321 12357999
Q ss_pred EEcCCC
Q 009708 411 LLDAPC 416 (528)
Q Consensus 411 l~D~Pc 416 (528)
+.++..
T Consensus 81 v~~ag~ 86 (243)
T PRK07102 81 LIAVGT 86 (243)
T ss_pred EECCcC
Confidence 987643
No 416
>PRK06125 short chain dehydrogenase; Provisional
Probab=82.46 E-value=25 Score=34.26 Aligned_cols=77 Identities=13% Similarity=0.076 Sum_probs=50.2
Q ss_pred CCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc-----CCCCCCE
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-----STVKCDK 409 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~-----~~~~fD~ 409 (528)
+.+||=.|+ +|+.+..++..+. .+.+|++++.++..++.+...+....-. .+.++..|+.+.... ..+..|.
T Consensus 7 ~k~vlItG~-~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~-~~~~~~~D~~~~~~~~~~~~~~g~id~ 84 (259)
T PRK06125 7 GKRVLITGA-SKGIGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAHGV-DVAVHALDLSSPEAREQLAAEAGDIDI 84 (259)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhcCC-ceEEEEecCCCHHHHHHHHHHhCCCCE
Confidence 567777775 5567776665443 2458999999998887776666543222 367788888653211 1256898
Q ss_pred EEEcC
Q 009708 410 VLLDA 414 (528)
Q Consensus 410 Vl~D~ 414 (528)
++.++
T Consensus 85 lv~~a 89 (259)
T PRK06125 85 LVNNA 89 (259)
T ss_pred EEECC
Confidence 88765
No 417
>PRK08251 short chain dehydrogenase; Provisional
Probab=82.28 E-value=34 Score=32.95 Aligned_cols=81 Identities=16% Similarity=0.058 Sum_probs=53.7
Q ss_pred CCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CCC
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 405 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~~ 405 (528)
+.+||=.| |+|+.+..+++.+. .+.+|+.++.++..++.+...+....-...+.++..|+.+.... ..+
T Consensus 2 ~k~vlItG-as~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 80 (248)
T PRK08251 2 RQKILITG-ASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDELG 80 (248)
T ss_pred CCEEEEEC-CCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 34677677 46788887777653 23589999999988887766655432223478888898764311 124
Q ss_pred CCCEEEEcCCCC
Q 009708 406 KCDKVLLDAPCS 417 (528)
Q Consensus 406 ~fD~Vl~D~Pcs 417 (528)
..|.|+.++-..
T Consensus 81 ~id~vi~~ag~~ 92 (248)
T PRK08251 81 GLDRVIVNAGIG 92 (248)
T ss_pred CCCEEEECCCcC
Confidence 689999876443
No 418
>PRK09186 flagellin modification protein A; Provisional
Probab=82.24 E-value=20 Score=34.68 Aligned_cols=78 Identities=22% Similarity=0.174 Sum_probs=50.6
Q ss_pred CCeEEEeCCccchHHHHHHHHcCC-CcEEEEEcCChHHHHHHHHHHHHc-CCCccEEEEcCcccccccc---------CC
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLSG-QGLVYAIDINKGRLRILNETAKLH-QVNSVIRTIHADLRTFADN---------ST 404 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~~-~~~v~avD~s~~~l~~~~~n~~~~-g~~~~i~~~~~D~~~~~~~---------~~ 404 (528)
+.+||=.|++ |+.+.+++..+.. +.+|+.++.++..++.+...+... +-. .+.++.+|+.+.... ..
T Consensus 4 ~k~vlItGas-~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~-~~~~~~~Dl~d~~~~~~~~~~~~~~~ 81 (256)
T PRK09186 4 GKTILITGAG-GLIGSALVKAILEAGGIVIAADIDKEALNELLESLGKEFKSK-KLSLVELDITDQESLEEFLSKSAEKY 81 (256)
T ss_pred CCEEEEECCC-chHHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHHhhcCCC-ceeEEEecCCCHHHHHHHHHHHHHHc
Confidence 5677777764 6788887776643 458999999988887766665432 222 356678888763211 01
Q ss_pred CCCCEEEEcCC
Q 009708 405 VKCDKVLLDAP 415 (528)
Q Consensus 405 ~~fD~Vl~D~P 415 (528)
+..|.|+.++.
T Consensus 82 ~~id~vi~~A~ 92 (256)
T PRK09186 82 GKIDGAVNCAY 92 (256)
T ss_pred CCccEEEECCc
Confidence 35899998763
No 419
>PRK06181 short chain dehydrogenase; Provisional
Probab=82.14 E-value=18 Score=35.35 Aligned_cols=75 Identities=16% Similarity=0.075 Sum_probs=48.8
Q ss_pred CeEEEeCCccchHHHHHHHHc-CCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CCCC
Q 009708 337 QSIVDCCAAPGGKTLYMASCL-SGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STVK 406 (528)
Q Consensus 337 ~~VLDl~aG~G~kt~~la~~~-~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~~~ 406 (528)
.+||=.| |+|+.+..++..+ ..+.+|++++.++...+.+.+.+...+ ..+.++..|+.+.... ....
T Consensus 2 ~~vlVtG-asg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 78 (263)
T PRK06181 2 KVVIITG-ASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHG--GEALVVPTDVSDAEACERLIEAAVARFGG 78 (263)
T ss_pred CEEEEec-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 3566555 5567777776543 334689999999887776666665544 2477888888764321 0136
Q ss_pred CCEEEEcC
Q 009708 407 CDKVLLDA 414 (528)
Q Consensus 407 fD~Vl~D~ 414 (528)
.|.|+..+
T Consensus 79 id~vi~~a 86 (263)
T PRK06181 79 IDILVNNA 86 (263)
T ss_pred CCEEEECC
Confidence 89998754
No 420
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=82.11 E-value=27 Score=33.52 Aligned_cols=78 Identities=15% Similarity=0.089 Sum_probs=52.6
Q ss_pred CCeEEEeCCccchHHHHHHHHc-CCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CCC
Q 009708 336 GQSIVDCCAAPGGKTLYMASCL-SGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 405 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~-~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~~ 405 (528)
+.+||=.|+ +|+.+.+++..+ ..+.+|+.++.++...+.....++..+ .++.++..|+.+.... ..+
T Consensus 7 ~~~vlVtG~-sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 83 (239)
T PRK07666 7 GKNALITGA-GRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYG--VKVVIATADVSDYEEVTAAIEQLKNELG 83 (239)
T ss_pred CCEEEEEcC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC--CeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 457888885 678888777654 335589999999887776655555443 3477888888664311 013
Q ss_pred CCCEEEEcCCC
Q 009708 406 KCDKVLLDAPC 416 (528)
Q Consensus 406 ~fD~Vl~D~Pc 416 (528)
..|.|+..+..
T Consensus 84 ~id~vi~~ag~ 94 (239)
T PRK07666 84 SIDILINNAGI 94 (239)
T ss_pred CccEEEEcCcc
Confidence 68999987654
No 421
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=82.02 E-value=30 Score=33.20 Aligned_cols=79 Identities=19% Similarity=0.090 Sum_probs=51.9
Q ss_pred CCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CCC
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 405 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~~ 405 (528)
+.+||=.|+ +|+.+..++..+. .+.+|++++.++..+..+...+...+. .+.++.+|+.+.... ..+
T Consensus 6 ~~~ilItGa-sg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 82 (251)
T PRK12826 6 GRVALVTGA-ARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAGG--KARARQVDVRDRAALKAAVAAGVEDFG 82 (251)
T ss_pred CCEEEEcCC-CCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--eEEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 557886665 5777777766543 345899999998877766666655442 377888888763210 013
Q ss_pred CCCEEEEcCCCC
Q 009708 406 KCDKVLLDAPCS 417 (528)
Q Consensus 406 ~fD~Vl~D~Pcs 417 (528)
.+|.|+..+...
T Consensus 83 ~~d~vi~~ag~~ 94 (251)
T PRK12826 83 RLDILVANAGIF 94 (251)
T ss_pred CCCEEEECCCCC
Confidence 689999876543
No 422
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=81.87 E-value=23 Score=34.21 Aligned_cols=78 Identities=17% Similarity=0.065 Sum_probs=52.9
Q ss_pred CCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CCC
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 405 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~~ 405 (528)
+.+||=.|+ +|+.+.++++.+- .+.+|+.++.++...+.+...++..+. ++.++.+|+.+.... ..+
T Consensus 4 ~~~vlItG~-sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 80 (258)
T PRK12429 4 GKVALVTGA-ASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAGG--KAIGVAMDVTDEEAINAGIDYAVETFG 80 (258)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCC--cEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 456775554 6788888887654 345899999999888777666665543 377788888764321 014
Q ss_pred CCCEEEEcCCC
Q 009708 406 KCDKVLLDAPC 416 (528)
Q Consensus 406 ~fD~Vl~D~Pc 416 (528)
.+|.|+..+..
T Consensus 81 ~~d~vi~~a~~ 91 (258)
T PRK12429 81 GVDILVNNAGI 91 (258)
T ss_pred CCCEEEECCCC
Confidence 68999986544
No 423
>PRK09291 short chain dehydrogenase; Provisional
Probab=81.85 E-value=25 Score=34.12 Aligned_cols=77 Identities=21% Similarity=0.084 Sum_probs=51.9
Q ss_pred CeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---CCCCCCEEEE
Q 009708 337 QSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---STVKCDKVLL 412 (528)
Q Consensus 337 ~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---~~~~fD~Vl~ 412 (528)
.+||=.|+ +|+.+..+++.+. .+.+|++++.++.....+....+..+.. +.++.+|+.+.... .....|.|+.
T Consensus 3 ~~vlVtGa-sg~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~--~~~~~~D~~~~~~~~~~~~~~id~vi~ 79 (257)
T PRK09291 3 KTILITGA-GSGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARRGLA--LRVEKLDLTDAIDRAQAAEWDVDVLLN 79 (257)
T ss_pred CEEEEeCC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCc--ceEEEeeCCCHHHHHHHhcCCCCEEEE
Confidence 46776666 5677777776553 3468999999888777776666655543 67788888764321 1247899998
Q ss_pred cCCC
Q 009708 413 DAPC 416 (528)
Q Consensus 413 D~Pc 416 (528)
++-.
T Consensus 80 ~ag~ 83 (257)
T PRK09291 80 NAGI 83 (257)
T ss_pred CCCc
Confidence 7544
No 424
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=81.73 E-value=33 Score=33.04 Aligned_cols=79 Identities=10% Similarity=0.061 Sum_probs=52.8
Q ss_pred CCeEEEeCCccchHHHHHHHHcCC-CcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CCC
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLSG-QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 405 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~~-~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~~ 405 (528)
+.+||=.|+ +|+.+..++..+-. +.+|+.++.+......+...++..+. .+.++.+|+.+.... ...
T Consensus 3 ~~~ilItGa-s~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~ 79 (250)
T TIGR03206 3 DKTAIVTGG-GGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAKGG--NAQAFACDITDRDSVDTAVAAAEQALG 79 (250)
T ss_pred CCEEEEeCC-CChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCC--cEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 567777775 46777777765533 34899999998887777766665442 377888888763211 013
Q ss_pred CCCEEEEcCCCC
Q 009708 406 KCDKVLLDAPCS 417 (528)
Q Consensus 406 ~fD~Vl~D~Pcs 417 (528)
..|.|+..+...
T Consensus 80 ~~d~vi~~ag~~ 91 (250)
T TIGR03206 80 PVDVLVNNAGWD 91 (250)
T ss_pred CCCEEEECCCCC
Confidence 579998876553
No 425
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=81.72 E-value=4.3 Score=42.87 Aligned_cols=66 Identities=18% Similarity=0.248 Sum_probs=46.9
Q ss_pred cccceeEee-cchHHHHHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHH
Q 009708 312 LKEGLCAVQ-DESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETA 380 (528)
Q Consensus 312 ~~~G~~~~Q-d~~s~l~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~ 380 (528)
|.+++.|-| .+....-..+|++.|+++||-+++|-....-+++ .+..+|+|||+||..+..++-.+
T Consensus 11 ~f~~lvY~~~WEDp~vD~~aL~i~~~d~vl~ItSaG~N~L~yL~---~~P~~I~aVDlNp~Q~aLleLKl 77 (380)
T PF11899_consen 11 FFRGLVYAQCWEDPRVDMEALNIGPDDRVLTITSAGCNALDYLL---AGPKRIHAVDLNPAQNALLELKL 77 (380)
T ss_pred hccceeeccccCCcHHHHHHhCCCCCCeEEEEccCCchHHHHHh---cCCceEEEEeCCHHHHHHHHHHH
Confidence 344556655 4444555678899999999999988555444433 34579999999999888776543
No 426
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=81.70 E-value=11 Score=38.33 Aligned_cols=101 Identities=22% Similarity=0.282 Sum_probs=59.4
Q ss_pred HhcCCCCCCeEEEeCCcc-chHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccc-cccc-CCC
Q 009708 329 AVVDPQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT-FADN-STV 405 (528)
Q Consensus 329 ~~l~~~~g~~VLDl~aG~-G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~-~~~~-~~~ 405 (528)
.....++|++||-.++|. |..++++|+.+ +.+|+++..+++..+.+++ .|.+..+.....+... +... ...
T Consensus 153 ~~~~l~~g~~vLI~g~g~vG~~a~~lA~~~--g~~v~~~~~s~~~~~~~~~----~g~~~v~~~~~~~~~~~l~~~~~~~ 226 (337)
T cd08261 153 RRAGVTAGDTVLVVGAGPIGLGVIQVAKAR--GARVIVVDIDDERLEFARE----LGADDTINVGDEDVAARLRELTDGE 226 (337)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEECCCHHHHHHHHH----hCCCEEecCcccCHHHHHHHHhCCC
Confidence 345677899999987653 55667777765 3679999888888776643 4544322222112111 1111 124
Q ss_pred CCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEE
Q 009708 406 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463 (528)
Q Consensus 406 ~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvy 463 (528)
.+|.|+- |.|.+ ..+..+++.|+++|+++.
T Consensus 227 ~vd~vld---~~g~~-------------------------~~~~~~~~~l~~~G~~i~ 256 (337)
T cd08261 227 GADVVID---ATGNP-------------------------ASMEEAVELVAHGGRVVL 256 (337)
T ss_pred CCCEEEE---CCCCH-------------------------HHHHHHHHHHhcCCEEEE
Confidence 5898874 33211 125667788888998774
No 427
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=81.53 E-value=15 Score=36.20 Aligned_cols=48 Identities=15% Similarity=0.173 Sum_probs=33.7
Q ss_pred hcCCCCCCeEEEeCCcc-chHHHHHHHHcCCCcEEEEEcCChHHHHHHHH
Q 009708 330 VVDPQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNE 378 (528)
Q Consensus 330 ~l~~~~g~~VLDl~aG~-G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~ 378 (528)
...+.+|++||=.|+|+ |..++.+|+.++ ..+|++++.++++.+.+++
T Consensus 92 ~~~~~~g~~vlI~g~g~vg~~~i~~a~~~g-~~~vi~~~~~~~~~~~~~~ 140 (277)
T cd08255 92 DAEPRLGERVAVVGLGLVGLLAAQLAKAAG-AREVVGVDPDAARRELAEA 140 (277)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCcEEEECCCHHHHHHHHH
Confidence 45677889888887655 556667777653 2249999999998765543
No 428
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=81.48 E-value=28 Score=33.61 Aligned_cols=80 Identities=11% Similarity=-0.029 Sum_probs=51.2
Q ss_pred eEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CCCCC
Q 009708 338 SIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STVKC 407 (528)
Q Consensus 338 ~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~~~f 407 (528)
++|=.|+ +|+.+..+++.+- .+.+|+.++.++..++.+.+.+...+. .+.++.+|+.+.... .....
T Consensus 2 ~~lItG~-sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~Dl~~~~~i~~~~~~~~~~~~~i 78 (254)
T TIGR02415 2 VALVTGG-AQGIGKGIAERLAKDGFAVAVADLNEETAKETAKEINQAGG--KAVAYKLDVSDKDQVFSAIDQAAEKFGGF 78 (254)
T ss_pred EEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--eEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 3455554 5777777776552 345899999988877766666665553 367888888763211 12357
Q ss_pred CEEEEcCCCCCCc
Q 009708 408 DKVLLDAPCSGLG 420 (528)
Q Consensus 408 D~Vl~D~Pcsg~G 420 (528)
|.|+.++.....+
T Consensus 79 d~vi~~ag~~~~~ 91 (254)
T TIGR02415 79 DVMVNNAGVAPIT 91 (254)
T ss_pred CEEEECCCcCCCC
Confidence 9999877654433
No 429
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=81.15 E-value=28 Score=33.81 Aligned_cols=79 Identities=15% Similarity=0.066 Sum_probs=52.5
Q ss_pred CCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CCC
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 405 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~~ 405 (528)
+.+||=.| |+|+.+.+++..+- .+.+|+.++.++...+.+.+.++..+. .+.++.+|+.+.... ...
T Consensus 7 ~~~vlItG-asg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 83 (262)
T PRK13394 7 GKTAVVTG-AASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAGG--KAIGVAMDVTNEDAVNAGIDKVAERFG 83 (262)
T ss_pred CCEEEEEC-CCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhcCc--eEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 56777555 45677777776553 345899999999888777776665543 367788998764321 124
Q ss_pred CCCEEEEcCCCC
Q 009708 406 KCDKVLLDAPCS 417 (528)
Q Consensus 406 ~fD~Vl~D~Pcs 417 (528)
..|.|+..+-+.
T Consensus 84 ~~d~vi~~ag~~ 95 (262)
T PRK13394 84 SVDILVSNAGIQ 95 (262)
T ss_pred CCCEEEECCccC
Confidence 589998866543
No 430
>PRK05650 short chain dehydrogenase; Provisional
Probab=81.14 E-value=24 Score=34.68 Aligned_cols=76 Identities=12% Similarity=-0.061 Sum_probs=49.9
Q ss_pred eEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CCCCC
Q 009708 338 SIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STVKC 407 (528)
Q Consensus 338 ~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~~~f 407 (528)
+||=.|+ +|+.+..++..+- .+.+|+.++.+...++.+...++..+. .+.++.+|+.+.... ....+
T Consensus 2 ~vlVtGa-sggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~D~~~~~~~~~~~~~i~~~~~~i 78 (270)
T PRK05650 2 RVMITGA-ASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREAGG--DGFYQRCDVRDYSQLTALAQACEEKWGGI 78 (270)
T ss_pred EEEEecC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--ceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 4565554 6677777776553 345899999998888777666665543 367788888764321 12468
Q ss_pred CEEEEcCCC
Q 009708 408 DKVLLDAPC 416 (528)
Q Consensus 408 D~Vl~D~Pc 416 (528)
|.|+.++..
T Consensus 79 d~lI~~ag~ 87 (270)
T PRK05650 79 DVIVNNAGV 87 (270)
T ss_pred CEEEECCCC
Confidence 999986543
No 431
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=80.99 E-value=13 Score=38.26 Aligned_cols=103 Identities=17% Similarity=0.273 Sum_probs=59.8
Q ss_pred HhcCCCCCCeEEEeCCcc-chHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccc-ccc-cCCC
Q 009708 329 AVVDPQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT-FAD-NSTV 405 (528)
Q Consensus 329 ~~l~~~~g~~VLDl~aG~-G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~-~~~-~~~~ 405 (528)
.....++|++||=.|+|+ |..++++|+.+ +...|+++|.++.+.+.++ .+|.+..+.....+... ... ....
T Consensus 160 ~~~~~~~g~~vlI~g~g~iG~~~~~lak~~-G~~~v~~~~~~~~~~~~~~----~~g~~~~v~~~~~~~~~~i~~~~~~~ 234 (351)
T cd08285 160 ELANIKLGDTVAVFGIGPVGLMAVAGARLR-GAGRIIAVGSRPNRVELAK----EYGATDIVDYKNGDVVEQILKLTGGK 234 (351)
T ss_pred HccCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEeCCHHHHHHHH----HcCCceEecCCCCCHHHHHHHHhCCC
Confidence 344567888888887653 33445666664 3346999999998877665 45664322211112111 111 1124
Q ss_pred CCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 406 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 406 ~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
.+|+|+- |+|.. ..+..+++.|+++|+++..
T Consensus 235 ~~d~vld---~~g~~-------------------------~~~~~~~~~l~~~G~~v~~ 265 (351)
T cd08285 235 GVDAVII---AGGGQ-------------------------DTFEQALKVLKPGGTISNV 265 (351)
T ss_pred CCcEEEE---CCCCH-------------------------HHHHHHHHHhhcCCEEEEe
Confidence 6898874 43311 1367778889999998843
No 432
>PRK05872 short chain dehydrogenase; Provisional
Probab=80.97 E-value=25 Score=35.37 Aligned_cols=79 Identities=22% Similarity=0.194 Sum_probs=49.8
Q ss_pred CCCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 404 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~ 404 (528)
.|.+||=.|++ |+.+..+++.+. .+.+|+.++.++..++.+.+.+ +....+..+..|+.+.... ..
T Consensus 8 ~gk~vlItGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l---~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 83 (296)
T PRK05872 8 AGKVVVVTGAA-RGIGAELARRLHARGAKLALVDLEEAELAALAAEL---GGDDRVLTVVADVTDLAAMQAAAEEAVERF 83 (296)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---cCCCcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence 46688877755 567777776553 3458999999988776655443 2222355556787764211 12
Q ss_pred CCCCEEEEcCCCC
Q 009708 405 VKCDKVLLDAPCS 417 (528)
Q Consensus 405 ~~fD~Vl~D~Pcs 417 (528)
+.+|.|+.++-..
T Consensus 84 g~id~vI~nAG~~ 96 (296)
T PRK05872 84 GGIDVVVANAGIA 96 (296)
T ss_pred CCCCEEEECCCcC
Confidence 5689999876543
No 433
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=80.85 E-value=15 Score=37.61 Aligned_cols=102 Identities=21% Similarity=0.275 Sum_probs=58.1
Q ss_pred hcCCCCCCeEEEeCCcc-chHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccC-CCCC
Q 009708 330 VVDPQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS-TVKC 407 (528)
Q Consensus 330 ~l~~~~g~~VLDl~aG~-G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~-~~~f 407 (528)
.....+|++||-.|+|. |..+.++|+.++ ...|++++-++...+.++ ..|....+.........+.... ...+
T Consensus 154 ~~~~~~~~~vlI~g~g~~g~~~~~lA~~~G-~~~v~~~~~~~~~~~~l~----~~g~~~~~~~~~~~~~~~~~~~~~~~~ 228 (343)
T cd08236 154 LAGITLGDTVVVIGAGTIGLLAIQWLKILG-AKRVIAVDIDDEKLAVAR----ELGADDTINPKEEDVEKVRELTEGRGA 228 (343)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHH----HcCCCEEecCccccHHHHHHHhCCCCC
Confidence 45677888998887654 556667776643 224899988887776553 3455321111111111111111 2359
Q ss_pred CEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 408 DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 408 D~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
|.|+- |+|.+ ..+..+++.|+++|+++..
T Consensus 229 d~vld---~~g~~-------------------------~~~~~~~~~l~~~G~~v~~ 257 (343)
T cd08236 229 DLVIE---AAGSP-------------------------ATIEQALALARPGGKVVLV 257 (343)
T ss_pred CEEEE---CCCCH-------------------------HHHHHHHHHhhcCCEEEEE
Confidence 98873 43321 1366778888999987743
No 434
>PRK07806 short chain dehydrogenase; Provisional
Probab=80.79 E-value=26 Score=33.82 Aligned_cols=118 Identities=19% Similarity=0.101 Sum_probs=64.0
Q ss_pred CCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCCh-HHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CC
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINK-GRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 404 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~-~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~ 404 (528)
+.+||-.|+ +|+.+.+++..+- .+.+|++++.+. ...+.+...++..+. .+.++.+|+.+.... ..
T Consensus 6 ~k~vlItGa-sggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~ 82 (248)
T PRK07806 6 GKTALVTGS-SRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAGG--RASAVGADLTDEESVAALMDTAREEF 82 (248)
T ss_pred CcEEEEECC-CCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcCC--ceEEEEcCCCCHHHHHHHHHHHHHhC
Confidence 567887775 4667777776553 344788887754 344444444444332 367788898764321 01
Q ss_pred CCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEc
Q 009708 405 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465 (528)
Q Consensus 405 ~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysT 465 (528)
+.+|.|+.++..+... ...++..+..+.. -...+++.+...++.+|.+|+.+
T Consensus 83 ~~~d~vi~~ag~~~~~--~~~~~~~~~vn~~-------~~~~l~~~~~~~~~~~~~iv~is 134 (248)
T PRK07806 83 GGLDALVLNASGGMES--GMDEDYAMRLNRD-------AQRNLARAALPLMPAGSRVVFVT 134 (248)
T ss_pred CCCcEEEECCCCCCCC--CCCcceeeEeeeH-------HHHHHHHHHHhhccCCceEEEEe
Confidence 3689988876432111 1112211111111 12345677777666667766543
No 435
>PRK08263 short chain dehydrogenase; Provisional
Probab=80.75 E-value=23 Score=35.05 Aligned_cols=76 Identities=16% Similarity=0.001 Sum_probs=48.1
Q ss_pred CCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CCC
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 405 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~~ 405 (528)
+..||=.|+ +|+.+.+++..+. .+.+|++++.++..++.+.... .+.+.++..|+.+.... ..+
T Consensus 3 ~k~vlItGa-sg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 76 (275)
T PRK08263 3 EKVWFITGA-SRGFGRAWTEAALERGDRVVATARDTATLADLAEKY-----GDRLLPLALDVTDRAAVFAAVETAVEHFG 76 (275)
T ss_pred CCEEEEeCC-CChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhc-----cCCeeEEEccCCCHHHHHHHHHHHHHHcC
Confidence 346777774 6778888877653 3457999999988776554322 22366777887654221 024
Q ss_pred CCCEEEEcCCCC
Q 009708 406 KCDKVLLDAPCS 417 (528)
Q Consensus 406 ~fD~Vl~D~Pcs 417 (528)
.+|.|+..+-..
T Consensus 77 ~~d~vi~~ag~~ 88 (275)
T PRK08263 77 RLDIVVNNAGYG 88 (275)
T ss_pred CCCEEEECCCCc
Confidence 689998865443
No 436
>PRK07904 short chain dehydrogenase; Provisional
Probab=80.67 E-value=21 Score=35.00 Aligned_cols=79 Identities=10% Similarity=0.003 Sum_probs=52.7
Q ss_pred CCCCeEEEeCCccchHHHHHHHHc-CC-CcEEEEEcCChHH-HHHHHHHHHHcCCCccEEEEcCcccccccc--------
Q 009708 334 QPGQSIVDCCAAPGGKTLYMASCL-SG-QGLVYAIDINKGR-LRILNETAKLHQVNSVIRTIHADLRTFADN-------- 402 (528)
Q Consensus 334 ~~g~~VLDl~aG~G~kt~~la~~~-~~-~~~v~avD~s~~~-l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~-------- 402 (528)
..+.+||=.|| +|+.+..+++.+ .. +.+|+.++.++.. ++.+.+.++..+.. .++++..|+.+....
T Consensus 6 ~~~~~vlItGa-s~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~-~v~~~~~D~~~~~~~~~~~~~~~ 83 (253)
T PRK07904 6 GNPQTILLLGG-TSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGAS-SVEVIDFDALDTDSHPKVIDAAF 83 (253)
T ss_pred CCCcEEEEEcC-CcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCC-ceEEEEecCCChHHHHHHHHHHH
Confidence 34567888887 577888888764 32 2589999998875 77666666665533 378888888763310
Q ss_pred CCCCCCEEEEcC
Q 009708 403 STVKCDKVLLDA 414 (528)
Q Consensus 403 ~~~~fD~Vl~D~ 414 (528)
..+..|.++.++
T Consensus 84 ~~g~id~li~~a 95 (253)
T PRK07904 84 AGGDVDVAIVAF 95 (253)
T ss_pred hcCCCCEEEEee
Confidence 014689888743
No 437
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=80.66 E-value=15 Score=37.17 Aligned_cols=80 Identities=15% Similarity=0.094 Sum_probs=48.1
Q ss_pred CCeEEEeCCccchHHHHHHHHcCCC-cEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc--CCCCCCEEEE
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLSGQ-GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN--STVKCDKVLL 412 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~~~-~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~--~~~~fD~Vl~ 412 (528)
+.+||=.|+ +|..+.+++..+-.. .+|++++.+..............+....++++.+|+.+.... .-..+|.|+.
T Consensus 4 ~~~ilVtGa-tGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih 82 (322)
T PLN02662 4 GKVVCVTGA-SGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGVFH 82 (322)
T ss_pred CCEEEEECC-hHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEEEE
Confidence 456776664 688888888776433 478888777654332222221122223478899998764321 1235899988
Q ss_pred cCCC
Q 009708 413 DAPC 416 (528)
Q Consensus 413 D~Pc 416 (528)
.+..
T Consensus 83 ~A~~ 86 (322)
T PLN02662 83 TASP 86 (322)
T ss_pred eCCc
Confidence 7654
No 438
>PRK12742 oxidoreductase; Provisional
Probab=80.62 E-value=25 Score=33.55 Aligned_cols=117 Identities=12% Similarity=0.062 Sum_probs=59.0
Q ss_pred CCCeEEEeCCccchHHHHHHHHcCC-CcEEEEEcC-ChHHHHHHHHHHHHcCCCccEEEEcCcccccccc-----CCCCC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLSG-QGLVYAIDI-NKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-----STVKC 407 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~~-~~~v~avD~-s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~-----~~~~f 407 (528)
.+.+||=.|+ +|+.+..+++.+.. +.+|+.+.. +++.++.+. ...+ +.++..|..+.... ....+
T Consensus 5 ~~k~vlItGa-sggIG~~~a~~l~~~G~~v~~~~~~~~~~~~~l~---~~~~----~~~~~~D~~~~~~~~~~~~~~~~i 76 (237)
T PRK12742 5 TGKKVLVLGG-SRGIGAAIVRRFVTDGANVRFTYAGSKDAAERLA---QETG----ATAVQTDSADRDAVIDVVRKSGAL 76 (237)
T ss_pred CCCEEEEECC-CChHHHHHHHHHHHCCCEEEEecCCCHHHHHHHH---HHhC----CeEEecCCCCHHHHHHHHHHhCCC
Confidence 3667886665 66778777776543 347776654 444444332 2223 34556676543210 12468
Q ss_pred CEEEEcCCCCCCccccCCchhhccCCHHHHHHHHH----HHHHHHHHHhccCcCCCEEEEEcC
Q 009708 408 DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKI----LQDELLDAASLLVKPGGVLVYSTC 466 (528)
Q Consensus 408 D~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~----~q~~lL~~a~~~LkpGG~LvysTc 466 (528)
|.++..+-....+.. +..+.++...... -...++..+...++.+|.+|+.+.
T Consensus 77 d~li~~ag~~~~~~~-------~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS 132 (237)
T PRK12742 77 DILVVNAGIAVFGDA-------LELDADDIDRLFKINIHAPYHASVEAARQMPEGGRIIIIGS 132 (237)
T ss_pred cEEEECCCCCCCCCc-------ccCCHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCeEEEEec
Confidence 998876543221111 1122233222211 112344566666677787776443
No 439
>PRK08267 short chain dehydrogenase; Provisional
Probab=80.58 E-value=24 Score=34.43 Aligned_cols=75 Identities=24% Similarity=0.050 Sum_probs=48.5
Q ss_pred eEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc----------CCCC
Q 009708 338 SIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN----------STVK 406 (528)
Q Consensus 338 ~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~----------~~~~ 406 (528)
+||=.|++ |+.+..++..+. .+.+|+.++.++..++.+..... + ..+.++++|+.+.... ..++
T Consensus 3 ~vlItGas-g~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~--~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~ 77 (260)
T PRK08267 3 SIFITGAA-SGIGRATALLFAAEGWRVGAYDINEAGLAALAAELG--A--GNAWTGALDVTDRAAWDAALADFAAATGGR 77 (260)
T ss_pred EEEEeCCC-chHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc--C--CceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 46666654 677777776543 34589999999887776655433 2 2477888898764311 0246
Q ss_pred CCEEEEcCCCC
Q 009708 407 CDKVLLDAPCS 417 (528)
Q Consensus 407 fD~Vl~D~Pcs 417 (528)
+|.|+..+-..
T Consensus 78 id~vi~~ag~~ 88 (260)
T PRK08267 78 LDVLFNNAGIL 88 (260)
T ss_pred CCEEEECCCCC
Confidence 89999866543
No 440
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=80.57 E-value=2.3 Score=44.67 Aligned_cols=119 Identities=20% Similarity=0.303 Sum_probs=68.8
Q ss_pred cchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccc----------c--ccc--CCCCCCEE
Q 009708 346 PGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT----------F--ADN--STVKCDKV 410 (528)
Q Consensus 346 ~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~----------~--~~~--~~~~fD~V 410 (528)
-|..++-+|..+. .+.+|+|+||++.+++.+.+ |-. .+..-+... + ... .-...|++
T Consensus 17 LGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~-----G~~---~i~e~~~~~~v~~~v~~g~lraTtd~~~l~~~dv~ 88 (436)
T COG0677 17 LGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNR-----GES---YIEEPDLDEVVKEAVESGKLRATTDPEELKECDVF 88 (436)
T ss_pred cccccHHHHHHHHHcCCceEeEeCCHHHHHHHhC-----Ccc---eeecCcHHHHHHHHHhcCCceEecChhhcccCCEE
Confidence 3444444443332 24689999999999987643 222 112222111 0 000 01257888
Q ss_pred EEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchhhHHHHHHHHhhCCCce
Q 009708 411 LLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLRHPEFS 488 (528)
Q Consensus 411 l~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~Ene~~v~~~l~~~~~~~ 488 (528)
++-.|.--.+ .+.||+.+- .. -.+.....|++|-.+++- .|..|.-.|+++...++..++..
T Consensus 89 iI~VPTPl~~--~~~pDls~v------~~-------aa~sIa~~L~kG~LVIlE-ST~~PGTTe~v~~plle~~sgL~ 150 (436)
T COG0677 89 IICVPTPLKK--YREPDLSYV------ES-------AARSIAPVLKKGDLVILE-STTPPGTTEEVVKPLLEERSGLK 150 (436)
T ss_pred EEEecCCcCC--CCCCChHHH------HH-------HHHHHHHhcCCCCEEEEe-cCCCCCcHHHHHHHHHhhcCCCc
Confidence 8777764333 266765442 22 255667889987665554 56778888889999988755443
No 441
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=80.54 E-value=14 Score=37.83 Aligned_cols=98 Identities=14% Similarity=0.078 Sum_probs=56.0
Q ss_pred cCCCCCCeEEEeCCcc-chHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCE
Q 009708 331 VDPQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDK 409 (528)
Q Consensus 331 l~~~~g~~VLDl~aG~-G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~ 409 (528)
+.+++|++||=.|+|+ |..+.++|+.+ +.+|++++.++++++.++ .+|.+..+.....|........ ..+|.
T Consensus 159 ~~~~~~~~vlV~g~g~iG~~~~~~a~~~--G~~vi~~~~~~~~~~~~~----~~g~~~~i~~~~~~~~~~~~~~-~~~d~ 231 (333)
T cd08296 159 SGAKPGDLVAVQGIGGLGHLAVQYAAKM--GFRTVAISRGSDKADLAR----KLGAHHYIDTSKEDVAEALQEL-GGAKL 231 (333)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHC--CCeEEEEeCChHHHHHHH----HcCCcEEecCCCccHHHHHHhc-CCCCE
Confidence 4677888888887533 22334555553 247999999988877664 3565431211111221111111 34888
Q ss_pred EEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEE
Q 009708 410 VLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463 (528)
Q Consensus 410 Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvy 463 (528)
|+- |+|.+. .+..+++.++++|+++.
T Consensus 232 vi~---~~g~~~-------------------------~~~~~~~~l~~~G~~v~ 257 (333)
T cd08296 232 ILA---TAPNAK-------------------------AISALVGGLAPRGKLLI 257 (333)
T ss_pred EEE---CCCchH-------------------------HHHHHHHHcccCCEEEE
Confidence 873 332111 36777888999998884
No 442
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=80.40 E-value=3.1 Score=40.16 Aligned_cols=64 Identities=14% Similarity=0.203 Sum_probs=50.2
Q ss_pred CCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccc
Q 009708 332 DPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF 399 (528)
Q Consensus 332 ~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~ 399 (528)
..-..+.|+++|-||||.|..+... +..++..||++...+.-++...+... .+..+.++|+..+
T Consensus 47 ~~~~~~~v~eIgPgpggitR~il~a--~~~RL~vVE~D~RFip~LQ~L~EAa~--~~~~IHh~D~LR~ 110 (326)
T KOG0821|consen 47 GNLTNAYVYEIGPGPGGITRSILNA--DVARLLVVEKDTRFIPGLQMLSEAAP--GKLRIHHGDVLRF 110 (326)
T ss_pred cccccceeEEecCCCCchhHHHHhc--chhheeeeeeccccChHHHHHhhcCC--cceEEecccccee
Confidence 3334678999999999999988864 34688999999999988888777543 3477888888764
No 443
>PRK09072 short chain dehydrogenase; Provisional
Probab=80.30 E-value=26 Score=34.31 Aligned_cols=77 Identities=18% Similarity=0.151 Sum_probs=49.7
Q ss_pred CCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccC--------CCC
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS--------TVK 406 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~--------~~~ 406 (528)
+.+||=.|++ |+.+..++..+. .+.+|++++.++..++.+...+ .. ...+.++..|+.+..... .+.
T Consensus 5 ~~~vlItG~s-~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-~~--~~~~~~~~~D~~d~~~~~~~~~~~~~~~~ 80 (263)
T PRK09072 5 DKRVLLTGAS-GGIGQALAEALAAAGARLLLVGRNAEKLEALAARL-PY--PGRHRWVVADLTSEAGREAVLARAREMGG 80 (263)
T ss_pred CCEEEEECCC-chHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH-hc--CCceEEEEccCCCHHHHHHHHHHHHhcCC
Confidence 5567777665 566666665442 3468999999988887666554 22 234778888887643210 246
Q ss_pred CCEEEEcCCC
Q 009708 407 CDKVLLDAPC 416 (528)
Q Consensus 407 fD~Vl~D~Pc 416 (528)
.|.|+..+..
T Consensus 81 id~lv~~ag~ 90 (263)
T PRK09072 81 INVLINNAGV 90 (263)
T ss_pred CCEEEECCCC
Confidence 8999986543
No 444
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=80.00 E-value=25 Score=40.14 Aligned_cols=80 Identities=14% Similarity=0.020 Sum_probs=52.2
Q ss_pred CCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHH-cCCCccEEEEcCcccccccc---------CC
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKL-HQVNSVIRTIHADLRTFADN---------ST 404 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~-~g~~~~i~~~~~D~~~~~~~---------~~ 404 (528)
+.+||=.|+ +|+.+..++..+- .+.+|+++|.+...++.+...+.. .+.. .+.++.+|+++.... ..
T Consensus 414 gkvvLVTGa-sggIG~aiA~~La~~Ga~Vvi~~r~~~~~~~~~~~l~~~~~~~-~~~~v~~Dvtd~~~v~~a~~~i~~~~ 491 (676)
T TIGR02632 414 RRVAFVTGG-AGGIGRETARRLAAEGAHVVLADLNLEAAEAVAAEINGQFGAG-RAVALKMDVTDEQAVKAAFADVALAY 491 (676)
T ss_pred CCEEEEeCC-CcHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhhcCCC-cEEEEECCCCCHHHHHHHHHHHHHhc
Confidence 567776666 4677777776553 346899999998887766555443 2322 366788888764211 12
Q ss_pred CCCCEEEEcCCCC
Q 009708 405 VKCDKVLLDAPCS 417 (528)
Q Consensus 405 ~~fD~Vl~D~Pcs 417 (528)
+.+|.|+.++-.+
T Consensus 492 g~iDilV~nAG~~ 504 (676)
T TIGR02632 492 GGVDIVVNNAGIA 504 (676)
T ss_pred CCCcEEEECCCCC
Confidence 4689998876543
No 445
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=79.99 E-value=21 Score=35.34 Aligned_cols=79 Identities=14% Similarity=-0.030 Sum_probs=46.4
Q ss_pred CCCeEEEeCCcc-chHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccc---------cC
Q 009708 335 PGQSIVDCCAAP-GGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD---------NS 403 (528)
Q Consensus 335 ~g~~VLDl~aG~-G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~---------~~ 403 (528)
.|.++|=.|++. +|.+..+++.+- .+.+|+.++.+....+.+++.....+ .+.++..|+.+... ..
T Consensus 5 ~~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~~~~~~~~~~~~~~~~---~~~~~~~Dl~~~~~v~~~~~~~~~~ 81 (262)
T PRK07984 5 SGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLG---SDIVLPCDVAEDASIDAMFAELGKV 81 (262)
T ss_pred CCCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecchhHHHHHHHHHhccC---CceEeecCCCCHHHHHHHHHHHHhh
Confidence 366888899887 477777776653 34578877876322233332222222 24567788876321 11
Q ss_pred CCCCCEEEEcCCC
Q 009708 404 TVKCDKVLLDAPC 416 (528)
Q Consensus 404 ~~~fD~Vl~D~Pc 416 (528)
.+.+|.++.++-.
T Consensus 82 ~g~iD~linnAg~ 94 (262)
T PRK07984 82 WPKFDGFVHSIGF 94 (262)
T ss_pred cCCCCEEEECCcc
Confidence 2568999987643
No 446
>PRK06482 short chain dehydrogenase; Provisional
Probab=79.92 E-value=22 Score=35.12 Aligned_cols=74 Identities=18% Similarity=0.030 Sum_probs=47.9
Q ss_pred eEEEeCCccchHHHHHHHHcCC-CcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CCCCC
Q 009708 338 SIVDCCAAPGGKTLYMASCLSG-QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STVKC 407 (528)
Q Consensus 338 ~VLDl~aG~G~kt~~la~~~~~-~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~~~f 407 (528)
+||=.|+ +|+.+.+++..+-. +.+|++++.++..++.++... + ..+.++.+|+.+.... .....
T Consensus 4 ~vlVtGa-sg~IG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~---~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 77 (276)
T PRK06482 4 TWFITGA-SSGFGRGMTERLLARGDRVAATVRRPDALDDLKARY---G--DRLWVLQLDVTDSAAVRAVVDRAFAALGRI 77 (276)
T ss_pred EEEEecC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhc---c--CceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 5665555 68888888876543 458999999987776554432 2 2477888898764311 12468
Q ss_pred CEEEEcCCCC
Q 009708 408 DKVLLDAPCS 417 (528)
Q Consensus 408 D~Vl~D~Pcs 417 (528)
|.|+..+-..
T Consensus 78 d~vi~~ag~~ 87 (276)
T PRK06482 78 DVVVSNAGYG 87 (276)
T ss_pred CEEEECCCCC
Confidence 9999865543
No 447
>PRK12829 short chain dehydrogenase; Provisional
Probab=79.87 E-value=32 Score=33.43 Aligned_cols=79 Identities=16% Similarity=0.108 Sum_probs=51.7
Q ss_pred CCCCCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------
Q 009708 333 PQPGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN--------- 402 (528)
Q Consensus 333 ~~~g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~--------- 402 (528)
..++.+||=.|+. |+.+..++..+- .+.+|++++.++..++.+...... . .+.++..|+.+....
T Consensus 8 ~~~~~~vlItGa~-g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~--~--~~~~~~~D~~~~~~~~~~~~~~~~ 82 (264)
T PRK12829 8 PLDGLRVLVTGGA-SGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLPG--A--KVTATVADVADPAQVERVFDTAVE 82 (264)
T ss_pred ccCCCEEEEeCCC-CcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc--C--ceEEEEccCCCHHHHHHHHHHHHH
Confidence 3467789988875 777877776543 345899999998877655443322 1 367788888764311
Q ss_pred CCCCCCEEEEcCCC
Q 009708 403 STVKCDKVLLDAPC 416 (528)
Q Consensus 403 ~~~~fD~Vl~D~Pc 416 (528)
....+|.|+..+..
T Consensus 83 ~~~~~d~vi~~ag~ 96 (264)
T PRK12829 83 RFGGLDVLVNNAGI 96 (264)
T ss_pred HhCCCCEEEECCCC
Confidence 01468999986544
No 448
>PRK06101 short chain dehydrogenase; Provisional
Probab=79.70 E-value=20 Score=34.70 Aligned_cols=113 Identities=13% Similarity=-0.000 Sum_probs=60.7
Q ss_pred eEEEeCCccchHHHHHHHHcCC-CcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc------CCCCCCEE
Q 009708 338 SIVDCCAAPGGKTLYMASCLSG-QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN------STVKCDKV 410 (528)
Q Consensus 338 ~VLDl~aG~G~kt~~la~~~~~-~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~------~~~~fD~V 410 (528)
+||=.| |+|+.+.++++.+.. +.+|+.++.++..++.+... + . .+.++.+|+.+.... .....|.+
T Consensus 3 ~vlItG-as~giG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~----~-~-~~~~~~~D~~~~~~~~~~~~~~~~~~d~~ 75 (240)
T PRK06101 3 AVLITG-ATSGIGKQLALDYAKQGWQVIACGRNQSVLDELHTQ----S-A-NIFTLAFDVTDHPGTKAALSQLPFIPELW 75 (240)
T ss_pred EEEEEc-CCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHh----c-C-CCeEEEeeCCCHHHHHHHHHhcccCCCEE
Confidence 455444 467888888876643 45899999998876554332 1 2 266778888764321 11235777
Q ss_pred EEcCCCCCCccccCCchhhccCCHHHHHH----HHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 411 LLDAPCSGLGVLSKRADLRWNRRLEDMEE----LKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 411 l~D~Pcsg~G~~~~~pd~~~~~~~~~~~~----l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
+.++....... ..+ .+.++..+ ...-...+++.+...++.||.+|..
T Consensus 76 i~~ag~~~~~~---~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~i 126 (240)
T PRK06101 76 IFNAGDCEYMD---DGK----VDATLMARVFNVNVLGVANCIEGIQPHLSCGHRVVIV 126 (240)
T ss_pred EEcCcccccCC---CCC----CCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeEEEE
Confidence 77654321111 001 12222222 1122334566666666678866644
No 449
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=79.66 E-value=18 Score=35.31 Aligned_cols=77 Identities=16% Similarity=0.063 Sum_probs=47.2
Q ss_pred CCCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 404 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~ 404 (528)
.|.++|-.|++ |+.+..+++.+- .+.+|+.++.+.. +.+.+.++..+. .+.++..|+.+.... ..
T Consensus 7 ~~k~~lItGas-~gIG~aia~~l~~~G~~vv~~~~~~~--~~~~~~~~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~~~ 81 (251)
T PRK12481 7 NGKVAIITGCN-TGLGQGMAIGLAKAGADIVGVGVAEA--PETQAQVEALGR--KFHFITADLIQQKDIDSIVSQAVEVM 81 (251)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCCCEEEEecCchH--HHHHHHHHHcCC--eEEEEEeCCCCHHHHHHHHHHHHHHc
Confidence 46788888864 567777776543 3457888876532 333344444443 377888888764321 12
Q ss_pred CCCCEEEEcCCC
Q 009708 405 VKCDKVLLDAPC 416 (528)
Q Consensus 405 ~~fD~Vl~D~Pc 416 (528)
+..|.++.++-.
T Consensus 82 g~iD~lv~~ag~ 93 (251)
T PRK12481 82 GHIDILINNAGI 93 (251)
T ss_pred CCCCEEEECCCc
Confidence 468998886543
No 450
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=79.65 E-value=28 Score=33.26 Aligned_cols=117 Identities=14% Similarity=0.097 Sum_probs=67.5
Q ss_pred CCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CCC
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 405 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~~ 405 (528)
+.+||=.|++ |+.+..+++.+. .+.+|++++.++..+..+...+...+ .+.++.+|+.+.... ..+
T Consensus 5 ~~~vlItGa~-g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 80 (238)
T PRK05786 5 GKKVAIIGVS-EGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKYG---NIHYVVGDVSSTESARNVIEKAAKVLN 80 (238)
T ss_pred CcEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC---CeEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 5688888885 777877776653 34589999999888776655444332 367788888763211 013
Q ss_pred CCCEEEEcCCCCCCccccCCchhhccCCHHHHHH----HHHHHHHHHHHHhccCcCCCEEEEEc
Q 009708 406 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEE----LKILQDELLDAASLLVKPGGVLVYST 465 (528)
Q Consensus 406 ~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~----l~~~q~~lL~~a~~~LkpGG~LvysT 465 (528)
.+|.|+..+.-+... +. . ..+++.. .......+++.....++++|.+|+.+
T Consensus 81 ~id~ii~~ag~~~~~-----~~-~---~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~s 135 (238)
T PRK05786 81 AIDGLVVTVGGYVED-----TV-E---EFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVS 135 (238)
T ss_pred CCCEEEEcCCCcCCC-----ch-H---HHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEe
Confidence 578888765432111 10 0 0122211 11222334666666777788776543
No 451
>PRK07890 short chain dehydrogenase; Provisional
Probab=79.56 E-value=35 Score=33.03 Aligned_cols=77 Identities=13% Similarity=0.006 Sum_probs=51.6
Q ss_pred CCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CCC
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 405 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~~ 405 (528)
+.+||=.|+ +|+.+.+++..+- .+.+|+.++.++..++.+...+...+. ++.++..|+.+.... ..+
T Consensus 5 ~k~vlItGa-~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~g 81 (258)
T PRK07890 5 GKVVVVSGV-GPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLGR--RALAVPTDITDEDQCANLVALALERFG 81 (258)
T ss_pred CCEEEEECC-CCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhCC--ceEEEecCCCCHHHHHHHHHHHHHHcC
Confidence 567886665 5667777766553 345899999999888777666655443 367888888753211 124
Q ss_pred CCCEEEEcCC
Q 009708 406 KCDKVLLDAP 415 (528)
Q Consensus 406 ~fD~Vl~D~P 415 (528)
..|.|+.++-
T Consensus 82 ~~d~vi~~ag 91 (258)
T PRK07890 82 RVDALVNNAF 91 (258)
T ss_pred CccEEEECCc
Confidence 6899998653
No 452
>PRK06198 short chain dehydrogenase; Provisional
Probab=79.50 E-value=25 Score=34.17 Aligned_cols=79 Identities=13% Similarity=0.051 Sum_probs=49.4
Q ss_pred CCCeEEEeCCccchHHHHHHHHcC-CCcE-EEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------C
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLS-GQGL-VYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------S 403 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~-~~~~-v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~ 403 (528)
.+.+||=.|+ +|+.+..+++.+. .+.+ |+.++.++.........+...+ ..+.++..|+.+.... .
T Consensus 5 ~~k~vlItGa-~g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 81 (260)
T PRK06198 5 DGKVALVTGG-TQGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEALG--AKAVFVQADLSDVEDCRRVVAAADEA 81 (260)
T ss_pred CCcEEEEeCC-CchHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 3567887765 5678887776553 2345 9999998777665555554433 2367788888753211 0
Q ss_pred CCCCCEEEEcCCC
Q 009708 404 TVKCDKVLLDAPC 416 (528)
Q Consensus 404 ~~~fD~Vl~D~Pc 416 (528)
.+.+|.|+..+-.
T Consensus 82 ~g~id~li~~ag~ 94 (260)
T PRK06198 82 FGRLDALVNAAGL 94 (260)
T ss_pred hCCCCEEEECCCc
Confidence 1368999876544
No 453
>KOG3350 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.39 E-value=9.4 Score=35.71 Aligned_cols=88 Identities=16% Similarity=0.178 Sum_probs=51.5
Q ss_pred ceeEeecchHHHHHHhcCC-CCCCeEEEeCCccchHHHHHHHHcC----CCcEEEEEcCChHHHHHHHHHHHHcCCCccE
Q 009708 315 GLCAVQDESAGLVVAVVDP-QPGQSIVDCCAAPGGKTLYMASCLS----GQGLVYAIDINKGRLRILNETAKLHQVNSVI 389 (528)
Q Consensus 315 G~~~~Qd~~s~l~~~~l~~-~~g~~VLDl~aG~G~kt~~la~~~~----~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i 389 (528)
-.+|.++-+..++.+.+.. ..|.+|--+-| |-.. +-+... +.-+|+-.+.+. +++.+| -
T Consensus 52 qfwy~~eta~~La~e~v~~s~e~~rIacvS~-Psly---~y~k~re~~~~~~~v~lfEfDk--------RFe~yg----~ 115 (217)
T KOG3350|consen 52 QFWYSDETARKLAAERVEASGEGSRIACVSC-PSLY---VYQKKREIEIPHDQVYLFEFDK--------RFELYG----T 115 (217)
T ss_pred hhhcCHHHHHHHHHHHHhhcccCceEEEEeC-chHH---hhhhhhhccCCceeEEEEEehh--------hHHhcc----c
Confidence 3456667777777776553 44545544443 4222 212111 245788888773 355666 3
Q ss_pred EEEcCccccccc---cCCCCCCEEEEcCCCCC
Q 009708 390 RTIHADLRTFAD---NSTVKCDKVLLDAPCSG 418 (528)
Q Consensus 390 ~~~~~D~~~~~~---~~~~~fD~Vl~D~Pcsg 418 (528)
+|+.-|...... .....||+|+.|||.-+
T Consensus 116 eFvfYDyN~p~dlp~~lk~~fdiivaDPPfL~ 147 (217)
T KOG3350|consen 116 EFVFYDYNCPLDLPDELKAHFDIIVADPPFLS 147 (217)
T ss_pred eeEEeccCCCCCCHHHHHhcccEEEeCCcccc
Confidence 577777654322 22467999999999944
No 454
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=78.98 E-value=25 Score=36.30 Aligned_cols=79 Identities=19% Similarity=0.062 Sum_probs=49.4
Q ss_pred CCeEEEeCCccchHHHHHHHHcCC-CcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc--CCCCCCEEEE
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLSG-QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN--STVKCDKVLL 412 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~~-~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~--~~~~fD~Vl~ 412 (528)
+.+||=.|+ +|..+.++++.+-. +.+|++++.++.....+...... ...++++.+|+.+.... ....+|.|+.
T Consensus 10 ~~~vLVtG~-~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih 85 (353)
T PLN02896 10 TGTYCVTGA-TGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWKE---GDRLRLFRADLQEEGSFDEAVKGCDGVFH 85 (353)
T ss_pred CCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhcc---CCeEEEEECCCCCHHHHHHHHcCCCEEEE
Confidence 567887775 68889888886643 34899888776544333222221 13478888998764321 1235899987
Q ss_pred cCCCCC
Q 009708 413 DAPCSG 418 (528)
Q Consensus 413 D~Pcsg 418 (528)
-+...+
T Consensus 86 ~A~~~~ 91 (353)
T PLN02896 86 VAASME 91 (353)
T ss_pred CCcccc
Confidence 665543
No 455
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=78.73 E-value=4.7 Score=41.19 Aligned_cols=57 Identities=14% Similarity=0.208 Sum_probs=45.3
Q ss_pred HHHhcCCCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCc
Q 009708 327 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNS 387 (528)
Q Consensus 327 ~~~~l~~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~ 387 (528)
+....+++||++|-=.|.|.=|.+..+..+..+.++|+|||++++..+.++ ..|..+
T Consensus 184 a~~~Akv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak----~fGaTe 240 (375)
T KOG0022|consen 184 AWNTAKVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAK----EFGATE 240 (375)
T ss_pred hhhhcccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHH----hcCcce
Confidence 344567899999999999887777766666677889999999999998765 457653
No 456
>PRK06194 hypothetical protein; Provisional
Probab=78.69 E-value=31 Score=34.19 Aligned_cols=83 Identities=14% Similarity=0.057 Sum_probs=54.1
Q ss_pred CCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CCC
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 405 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~~ 405 (528)
+.+||=.| |+|+.+.++++.+. .+.+|+.+|.+...++.....+...+. .+.++.+|+.+.... ..+
T Consensus 6 ~k~vlVtG-asggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~d~~~~~~~~~~~~~~~g 82 (287)
T PRK06194 6 GKVAVITG-AASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQGA--EVLGVRTDVSDAAQVEALADAALERFG 82 (287)
T ss_pred CCEEEEeC-CccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCC--eEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 55788555 45777888776554 345899999998877766555554443 377788998764211 024
Q ss_pred CCCEEEEcCCCCCCcc
Q 009708 406 KCDKVLLDAPCSGLGV 421 (528)
Q Consensus 406 ~fD~Vl~D~Pcsg~G~ 421 (528)
..|.|+.++-.++.+.
T Consensus 83 ~id~vi~~Ag~~~~~~ 98 (287)
T PRK06194 83 AVHLLFNNAGVGAGGL 98 (287)
T ss_pred CCCEEEECCCCCCCCC
Confidence 5899998776654443
No 457
>PRK06182 short chain dehydrogenase; Validated
Probab=78.47 E-value=24 Score=34.86 Aligned_cols=73 Identities=15% Similarity=0.080 Sum_probs=46.9
Q ss_pred CCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CCC
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 405 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~~ 405 (528)
+.+||=.| |+|+.+..+++.+. .+.+|++++.++..++.+.. .+ +.++.+|+.+.... ..+
T Consensus 3 ~k~vlItG-asggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~~----~~----~~~~~~Dv~~~~~~~~~~~~~~~~~~ 73 (273)
T PRK06182 3 KKVALVTG-ASSGIGKATARRLAAQGYTVYGAARRVDKMEDLAS----LG----VHPLSLDVTDEASIKAAVDTIIAEEG 73 (273)
T ss_pred CCEEEEEC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh----CC----CeEEEeeCCCHHHHHHHHHHHHHhcC
Confidence 45677666 46778888887653 34589999999877654321 12 56777887764311 124
Q ss_pred CCCEEEEcCCCC
Q 009708 406 KCDKVLLDAPCS 417 (528)
Q Consensus 406 ~fD~Vl~D~Pcs 417 (528)
.+|.|+.++...
T Consensus 74 ~id~li~~ag~~ 85 (273)
T PRK06182 74 RIDVLVNNAGYG 85 (273)
T ss_pred CCCEEEECCCcC
Confidence 689999876543
No 458
>PRK06196 oxidoreductase; Provisional
Probab=78.38 E-value=22 Score=36.14 Aligned_cols=75 Identities=15% Similarity=0.110 Sum_probs=49.8
Q ss_pred CCCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 404 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~ 404 (528)
.|.+||=.|+ +|+.+.+++..+. .+.+|++++.++..++.+...+. . +.++.+|+.+.... ..
T Consensus 25 ~~k~vlITGa-sggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~l~-----~-v~~~~~Dl~d~~~v~~~~~~~~~~~ 97 (315)
T PRK06196 25 SGKTAIVTGG-YSGLGLETTRALAQAGAHVIVPARRPDVAREALAGID-----G-VEVVMLDLADLESVRAFAERFLDSG 97 (315)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhh-----h-CeEEEccCCCHHHHHHHHHHHHhcC
Confidence 3567887775 5778888777654 34589999999887765544332 1 56778888764311 12
Q ss_pred CCCCEEEEcCCC
Q 009708 405 VKCDKVLLDAPC 416 (528)
Q Consensus 405 ~~fD~Vl~D~Pc 416 (528)
...|.|+.++..
T Consensus 98 ~~iD~li~nAg~ 109 (315)
T PRK06196 98 RRIDILINNAGV 109 (315)
T ss_pred CCCCEEEECCCC
Confidence 568999987754
No 459
>PRK07791 short chain dehydrogenase; Provisional
Probab=78.23 E-value=32 Score=34.48 Aligned_cols=79 Identities=13% Similarity=0.035 Sum_probs=48.8
Q ss_pred CCCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCCh---------HHHHHHHHHHHHcCCCccEEEEcCccccccc---
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINK---------GRLRILNETAKLHQVNSVIRTIHADLRTFAD--- 401 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~---------~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~--- 401 (528)
.|.++|=.|++. +++..+++.+- .+.+|+.++.+. ..++.+.+.++..+. .+.++..|+.+...
T Consensus 5 ~~k~~lITGas~-GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~Dv~~~~~v~~ 81 (286)
T PRK07791 5 DGRVVIVTGAGG-GIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGG--EAVANGDDIADWDGAAN 81 (286)
T ss_pred CCCEEEEECCCc-hHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhcCC--ceEEEeCCCCCHHHHHH
Confidence 466888888765 56666665442 345788888765 555555555554443 36677888876321
Q ss_pred ------cCCCCCCEEEEcCCC
Q 009708 402 ------NSTVKCDKVLLDAPC 416 (528)
Q Consensus 402 ------~~~~~fD~Vl~D~Pc 416 (528)
...+..|.++.++-.
T Consensus 82 ~~~~~~~~~g~id~lv~nAG~ 102 (286)
T PRK07791 82 LVDAAVETFGGLDVLVNNAGI 102 (286)
T ss_pred HHHHHHHhcCCCCEEEECCCC
Confidence 012568999887543
No 460
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=78.02 E-value=19 Score=36.49 Aligned_cols=99 Identities=17% Similarity=0.244 Sum_probs=57.0
Q ss_pred HhcCCCCCCeEEEeCCcc-chHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccc---cccCC
Q 009708 329 AVVDPQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF---ADNST 404 (528)
Q Consensus 329 ~~l~~~~g~~VLDl~aG~-G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~---~~~~~ 404 (528)
.....++|++||-.|+|. |..++++|+.++ ...|++++.++++.+.++ ..|.+. ++..+-... .....
T Consensus 153 ~~~~~~~g~~vlI~g~g~vg~~~~~la~~~G-~~~v~~~~~~~~~~~~~~----~~g~~~---~~~~~~~~~~~~~~~~~ 224 (334)
T cd08234 153 DLLGIKPGDSVLVFGAGPIGLLLAQLLKLNG-ASRVTVAEPNEEKLELAK----KLGATE---TVDPSREDPEAQKEDNP 224 (334)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEECCCHHHHHHHH----HhCCeE---EecCCCCCHHHHHHhcC
Confidence 455677899999987542 334455565532 224889999988877663 345442 222221111 01123
Q ss_pred CCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEE
Q 009708 405 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463 (528)
Q Consensus 405 ~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvy 463 (528)
..+|.|+. |++.+ ..+..+++.|+++|+++.
T Consensus 225 ~~vd~v~~---~~~~~-------------------------~~~~~~~~~l~~~G~~v~ 255 (334)
T cd08234 225 YGFDVVIE---ATGVP-------------------------KTLEQAIEYARRGGTVLV 255 (334)
T ss_pred CCCcEEEE---CCCCh-------------------------HHHHHHHHHHhcCCEEEE
Confidence 56898874 43211 136667788889998763
No 461
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=77.90 E-value=41 Score=32.27 Aligned_cols=77 Identities=17% Similarity=0.069 Sum_probs=50.3
Q ss_pred CCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CCC
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 405 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~~ 405 (528)
+.+||=.|+. |+.+.++++.+- .+.+|++++.++..+..+...+.. + ..+.++.+|+.+.... ...
T Consensus 5 ~~~vlItGas-g~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 80 (251)
T PRK07231 5 GKVAIVTGAS-SGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILA-G--GRAIAVAADVSDEADVEAAVAAALERFG 80 (251)
T ss_pred CcEEEEECCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc-C--CeEEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 4567766654 567776666543 345899999999887776665544 2 2377888888764321 023
Q ss_pred CCCEEEEcCCC
Q 009708 406 KCDKVLLDAPC 416 (528)
Q Consensus 406 ~fD~Vl~D~Pc 416 (528)
.+|.|+..+..
T Consensus 81 ~~d~vi~~ag~ 91 (251)
T PRK07231 81 SVDILVNNAGT 91 (251)
T ss_pred CCCEEEECCCC
Confidence 68999987654
No 462
>PRK12747 short chain dehydrogenase; Provisional
Probab=77.89 E-value=58 Score=31.50 Aligned_cols=124 Identities=12% Similarity=0.041 Sum_probs=63.2
Q ss_pred CCeEEEeCCccchHHHHHHHHcCC-CcEEEEEc-CChHHHHHHHHHHHHcCCCccEEEEcCccccccc------------
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLSG-QGLVYAID-INKGRLRILNETAKLHQVNSVIRTIHADLRTFAD------------ 401 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~~-~~~v~avD-~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~------------ 401 (528)
+.++|=.|++ |+.+.++++.+-. +.+|+.++ .++..++.+...+...+. .+..+..|+.+...
T Consensus 4 ~k~~lItGas-~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (252)
T PRK12747 4 GKVALVTGAS-RGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQSNGG--SAFSIGANLESLHGVEALYSSLDNEL 80 (252)
T ss_pred CCEEEEeCCC-ChHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHHHhcCC--ceEEEecccCCHHHHHHHHHHHHHHh
Confidence 5567777755 5677777776543 34666654 455555555444444432 24566677765321
Q ss_pred --cC-CCCCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEc
Q 009708 402 --NS-TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465 (528)
Q Consensus 402 --~~-~~~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysT 465 (528)
.. ....|.++.++-....+.+...+.-.|. ..+.....-...+++.+...++.+|.+|+.+
T Consensus 81 ~~~~g~~~id~lv~~Ag~~~~~~~~~~~~~~~~---~~~~vN~~~~~~l~~~~~~~~~~~g~iv~is 144 (252)
T PRK12747 81 QNRTGSTKFDILINNAGIGPGAFIEETTEQFFD---RMVSVNAKAPFFIIQQALSRLRDNSRIINIS 144 (252)
T ss_pred hhhcCCCCCCEEEECCCcCCCCCcccCCHHHHH---HHHHHhhhHHHHHHHHHHHHhhcCCeEEEEC
Confidence 00 1268999887654322222222211121 1111111222345666667677778877543
No 463
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=77.82 E-value=23 Score=36.76 Aligned_cols=103 Identities=18% Similarity=0.265 Sum_probs=57.9
Q ss_pred hcCCCCCCeEEEeCCcc-chHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCc--ccc-ccccCCC
Q 009708 330 VVDPQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHAD--LRT-FADNSTV 405 (528)
Q Consensus 330 ~l~~~~g~~VLDl~aG~-G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D--~~~-~~~~~~~ 405 (528)
...+++|++||=.|+|+ |..++++|+.++ ..+|+++|.++.+++.++ .+|.+..+.....+ ... +......
T Consensus 179 ~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G-~~~Vi~~~~~~~~~~~~~----~~ga~~~i~~~~~~~~~~~~~~~~~~~ 253 (365)
T cd08277 179 TAKVEPGSTVAVFGLGAVGLSAIMGAKIAG-ASRIIGVDINEDKFEKAK----EFGATDFINPKDSDKPVSEVIREMTGG 253 (365)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHH----HcCCCcEeccccccchHHHHHHHHhCC
Confidence 34567899998887643 223345565542 237999999999887764 35665322211111 111 1111124
Q ss_pred CCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCC-CEEEEEc
Q 009708 406 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPG-GVLVYST 465 (528)
Q Consensus 406 ~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpG-G~LvysT 465 (528)
.+|+|+- |+|.+ ..+..+++.++++ |+++...
T Consensus 254 g~d~vid---~~g~~-------------------------~~~~~~~~~l~~~~G~~v~~g 286 (365)
T cd08277 254 GVDYSFE---CTGNA-------------------------DLMNEALESTKLGWGVSVVVG 286 (365)
T ss_pred CCCEEEE---CCCCh-------------------------HHHHHHHHhcccCCCEEEEEc
Confidence 6898873 44311 1366778888875 8887543
No 464
>PRK08265 short chain dehydrogenase; Provisional
Probab=77.82 E-value=41 Score=32.93 Aligned_cols=75 Identities=16% Similarity=0.035 Sum_probs=47.4
Q ss_pred CCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CCC
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 405 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~~ 405 (528)
+.++|=.|+ +|+.+..++..+. .+.+|+.++.++..++.+.+. .+ ..+.++.+|+.+.... ..+
T Consensus 6 ~k~vlItGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~---~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 79 (261)
T PRK08265 6 GKVAIVTGG-ATLIGAAVARALVAAGARVAIVDIDADNGAAVAAS---LG--ERARFIATDITDDAAIERAVATVVARFG 79 (261)
T ss_pred CCEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH---hC--CeeEEEEecCCCHHHHHHHHHHHHHHhC
Confidence 557777775 4667777776553 345899999988765544332 23 2367888888764211 124
Q ss_pred CCCEEEEcCCC
Q 009708 406 KCDKVLLDAPC 416 (528)
Q Consensus 406 ~fD~Vl~D~Pc 416 (528)
..|.++.++-.
T Consensus 80 ~id~lv~~ag~ 90 (261)
T PRK08265 80 RVDILVNLACT 90 (261)
T ss_pred CCCEEEECCCC
Confidence 68999887643
No 465
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=77.71 E-value=39 Score=33.03 Aligned_cols=81 Identities=12% Similarity=0.039 Sum_probs=49.1
Q ss_pred CCCeEEEeCCcc-chHHHHHHHHcC-CCcEEEEEcCC-----------hHHHHHHHHHHHHcCCCccEEEEcCccccccc
Q 009708 335 PGQSIVDCCAAP-GGKTLYMASCLS-GQGLVYAIDIN-----------KGRLRILNETAKLHQVNSVIRTIHADLRTFAD 401 (528)
Q Consensus 335 ~g~~VLDl~aG~-G~kt~~la~~~~-~~~~v~avD~s-----------~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~ 401 (528)
.|.+||=.|+.. |+.+.+++..+- .+.+|+..+.+ ......+.+.++..|. .+.++..|+.+...
T Consensus 5 ~~k~vlVtGas~~~giG~~~a~~l~~~G~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~D~~~~~~ 82 (256)
T PRK12859 5 KNKVAVVTGVSRLDGIGAAICKELAEAGADIFFTYWTAYDKEMPWGVDQDEQIQLQEELLKNGV--KVSSMELDLTQNDA 82 (256)
T ss_pred CCcEEEEECCCCCCChHHHHHHHHHHCCCeEEEEecccccccccccccHHHHHHHHHHHHhcCC--eEEEEEcCCCCHHH
Confidence 467899999874 677777776553 23467765421 2233344455565554 36778888875321
Q ss_pred ---------cCCCCCCEEEEcCCCC
Q 009708 402 ---------NSTVKCDKVLLDAPCS 417 (528)
Q Consensus 402 ---------~~~~~fD~Vl~D~Pcs 417 (528)
...+..|.|+.++-+.
T Consensus 83 i~~~~~~~~~~~g~id~li~~ag~~ 107 (256)
T PRK12859 83 PKELLNKVTEQLGYPHILVNNAAYS 107 (256)
T ss_pred HHHHHHHHHHHcCCCcEEEECCCCC
Confidence 1124589999887653
No 466
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=77.61 E-value=17 Score=35.76 Aligned_cols=80 Identities=13% Similarity=-0.049 Sum_probs=46.0
Q ss_pred CCCeEEEeCCc-cchHHHHHHHHcCC-CcEEEEEcCChH--HHHHHHHHHHHcCCCccEEEEcCcccccccc--------
Q 009708 335 PGQSIVDCCAA-PGGKTLYMASCLSG-QGLVYAIDINKG--RLRILNETAKLHQVNSVIRTIHADLRTFADN-------- 402 (528)
Q Consensus 335 ~g~~VLDl~aG-~G~kt~~la~~~~~-~~~v~avD~s~~--~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~-------- 402 (528)
.|.++|=.|++ ++|.+..+++.+.. +.+|+.++.+.. +.+...+.+...+ . .+.++..|+.+....
T Consensus 5 ~~k~~lItGas~~~GIG~aia~~la~~G~~v~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~Dl~d~~~v~~~~~~~~ 82 (258)
T PRK07370 5 TGKKALVTGIANNRSIAWGIAQQLHAAGAELGITYLPDEKGRFEKKVRELTEPL-N-PSLFLPCDVQDDAQIEETFETIK 82 (258)
T ss_pred CCcEEEEeCCCCCCchHHHHHHHHHHCCCEEEEEecCcccchHHHHHHHHHhcc-C-cceEeecCcCCHHHHHHHHHHHH
Confidence 36788999985 68888888876643 346766554332 2222222222222 2 245677888764211
Q ss_pred -CCCCCCEEEEcCCC
Q 009708 403 -STVKCDKVLLDAPC 416 (528)
Q Consensus 403 -~~~~fD~Vl~D~Pc 416 (528)
..+.+|.++.++-.
T Consensus 83 ~~~g~iD~lv~nag~ 97 (258)
T PRK07370 83 QKWGKLDILVHCLAF 97 (258)
T ss_pred HHcCCCCEEEEcccc
Confidence 12578998887643
No 467
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=77.60 E-value=31 Score=34.98 Aligned_cols=80 Identities=18% Similarity=0.035 Sum_probs=48.6
Q ss_pred CCCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCC-hHHHHHHHHHHHHcCCCccEEEEcCcccccccc--------CC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDIN-KGRLRILNETAKLHQVNSVIRTIHADLRTFADN--------ST 404 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s-~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~--------~~ 404 (528)
.|.++|=.|++ |+.+..++..+- .+.+|+.+|.+ ...++.+.+.++..|. .+.++.+|+.+.... ..
T Consensus 11 ~~k~~lVTGas-~gIG~~ia~~L~~~Ga~Vv~~~~~~~~~~~~~~~~i~~~g~--~~~~~~~Dv~d~~~~~~~~~~~~~~ 87 (306)
T PRK07792 11 SGKVAVVTGAA-AGLGRAEALGLARLGATVVVNDVASALDASDVLDEIRAAGA--KAVAVAGDISQRATADELVATAVGL 87 (306)
T ss_pred CCCEEEEECCC-ChHHHHHHHHHHHCCCEEEEecCCchhHHHHHHHHHHhcCC--eEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 35678866665 566766665543 34588888874 3455555555554443 367788888763110 02
Q ss_pred CCCCEEEEcCCCC
Q 009708 405 VKCDKVLLDAPCS 417 (528)
Q Consensus 405 ~~fD~Vl~D~Pcs 417 (528)
+..|.++.++-..
T Consensus 88 g~iD~li~nAG~~ 100 (306)
T PRK07792 88 GGLDIVVNNAGIT 100 (306)
T ss_pred CCCCEEEECCCCC
Confidence 5689999876543
No 468
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=77.38 E-value=4.7 Score=40.57 Aligned_cols=49 Identities=16% Similarity=0.186 Sum_probs=41.0
Q ss_pred CCCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcC
Q 009708 333 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQ 384 (528)
Q Consensus 333 ~~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g 384 (528)
..+|+.|||..+|+|....++... +-..+++|+++.-++.+.+++....
T Consensus 220 s~~~diVlDpf~GsGtt~~aa~~~---~r~~ig~e~~~~y~~~~~~r~~~~~ 268 (302)
T COG0863 220 SFPGDIVLDPFAGSGTTGIAAKNL---GRRFIGIEINPEYVEVALKRLQEGL 268 (302)
T ss_pred CCCCCEEeecCCCCChHHHHHHHc---CCceEEEecCHHHHHHHHHHHHhhc
Confidence 567999999999999877766553 4578999999999999999887653
No 469
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=77.34 E-value=44 Score=32.07 Aligned_cols=79 Identities=18% Similarity=0.112 Sum_probs=52.6
Q ss_pred CCCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 404 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~ 404 (528)
++.++|=.|+ +|+.+..+++.+. .+.+|+.++.++..++.+.+.+...+. .+.++..|+.+.... ..
T Consensus 4 ~~~~~lItG~-~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (253)
T PRK08217 4 KDKVIVITGG-AQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALGT--EVRGYAANVTDEEDVEATFAQIAEDF 80 (253)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--ceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 3668887775 4667777776543 345899999999888777666665443 367788887653211 01
Q ss_pred CCCCEEEEcCCC
Q 009708 405 VKCDKVLLDAPC 416 (528)
Q Consensus 405 ~~fD~Vl~D~Pc 416 (528)
..+|.|+..+..
T Consensus 81 ~~id~vi~~ag~ 92 (253)
T PRK08217 81 GQLNGLINNAGI 92 (253)
T ss_pred CCCCEEEECCCc
Confidence 468999986543
No 470
>PLN02827 Alcohol dehydrogenase-like
Probab=76.99 E-value=19 Score=37.72 Aligned_cols=101 Identities=19% Similarity=0.181 Sum_probs=57.6
Q ss_pred cCCCCCCeEEEeCCcc-chHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEc--Cccccccc-cCCCC
Q 009708 331 VDPQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIH--ADLRTFAD-NSTVK 406 (528)
Q Consensus 331 l~~~~g~~VLDl~aG~-G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~--~D~~~~~~-~~~~~ 406 (528)
..+++|++||=.|+|+ |..++++|+.++ ...|+++|.++.+.+.+ +.+|.+..+.... .+...... .....
T Consensus 189 ~~~~~g~~VlV~G~G~vG~~~iqlak~~G-~~~vi~~~~~~~~~~~a----~~lGa~~~i~~~~~~~~~~~~v~~~~~~g 263 (378)
T PLN02827 189 ADVSKGSSVVIFGLGTVGLSVAQGAKLRG-ASQIIGVDINPEKAEKA----KTFGVTDFINPNDLSEPIQQVIKRMTGGG 263 (378)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEECCCHHHHHHH----HHcCCcEEEcccccchHHHHHHHHHhCCC
Confidence 4567899999887643 223344555532 33689999999888766 3467653221111 01111111 11236
Q ss_pred CCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCC-CEEEEE
Q 009708 407 CDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPG-GVLVYS 464 (528)
Q Consensus 407 fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpG-G~Lvys 464 (528)
+|+|+ | |+|.. ..+..+++++++| |+++..
T Consensus 264 ~d~vi-d--~~G~~-------------------------~~~~~~l~~l~~g~G~iv~~ 294 (378)
T PLN02827 264 ADYSF-E--CVGDT-------------------------GIATTALQSCSDGWGLTVTL 294 (378)
T ss_pred CCEEE-E--CCCCh-------------------------HHHHHHHHhhccCCCEEEEE
Confidence 89886 3 54421 1266778889998 998754
No 471
>PRK05855 short chain dehydrogenase; Validated
Probab=76.91 E-value=31 Score=37.92 Aligned_cols=82 Identities=20% Similarity=0.097 Sum_probs=55.9
Q ss_pred CCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CCC
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 405 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~~ 405 (528)
+.++|=.|+ +|+.+.+++..+. .+.+|+.++.+...++.+...++..|. .+.++.+|+.+.... ..+
T Consensus 315 ~~~~lv~G~-s~giG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dv~~~~~~~~~~~~~~~~~g 391 (582)
T PRK05855 315 GKLVVVTGA-GSGIGRETALAFAREGAEVVASDIDEAAAERTAELIRAAGA--VAHAYRVDVSDADAMEAFAEWVRAEHG 391 (582)
T ss_pred CCEEEEECC-cCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--eEEEEEcCCCCHHHHHHHHHHHHHhcC
Confidence 456776665 6777887777664 345799999999888877777666554 377888998774321 124
Q ss_pred CCCEEEEcCCCCCCc
Q 009708 406 KCDKVLLDAPCSGLG 420 (528)
Q Consensus 406 ~fD~Vl~D~Pcsg~G 420 (528)
..|.++.++-....|
T Consensus 392 ~id~lv~~Ag~~~~~ 406 (582)
T PRK05855 392 VPDIVVNNAGIGMAG 406 (582)
T ss_pred CCcEEEECCccCCCC
Confidence 689999876544333
No 472
>PF04031 Las1: Las1-like ; InterPro: IPR007174 Las1 is an essential nuclear protein involved in cell morphogenesis and cell surface growth [].
Probab=76.85 E-value=16 Score=33.48 Aligned_cols=37 Identities=24% Similarity=0.286 Sum_probs=27.5
Q ss_pred chhhHHHHHHHHHhhcCCCCCCCCcCcCCcHHHHHHHHhhhcChHHHHHH
Q 009708 187 AGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRR 236 (528)
Q Consensus 187 ~~~fVN~VL~~~~r~~~~~~~~~~~~~~~~~~~~~~ls~~~s~P~w~~~~ 236 (528)
-.+||||+++........ .....++.+.++|.|+|+.
T Consensus 84 ivRfVNgl~D~~Q~~~~a-------------~si~~~A~~iglP~~lVdl 120 (154)
T PF04031_consen 84 IVRFVNGLVDPSQQGKYA-------------RSIASLAKEIGLPSWLVDL 120 (154)
T ss_pred HHHHHHHhhhHhhccchh-------------hhHHHHHHHcCCCHHHHHH
Confidence 579999999997642211 1245688899999999987
No 473
>PRK08303 short chain dehydrogenase; Provisional
Probab=76.75 E-value=45 Score=33.86 Aligned_cols=77 Identities=14% Similarity=0.038 Sum_probs=48.9
Q ss_pred CCCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCCh----------HHHHHHHHHHHHcCCCccEEEEcCcccccccc-
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINK----------GRLRILNETAKLHQVNSVIRTIHADLRTFADN- 402 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~----------~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~- 402 (528)
.|.++|-.|++. |++..+++.+- .+.+|+.++.+. +.++.+.+.++..|. .+.++..|+.+....
T Consensus 7 ~~k~~lITGgs~-GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~Dv~~~~~v~ 83 (305)
T PRK08303 7 RGKVALVAGATR-GAGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTAAGG--RGIAVQVDHLVPEQVR 83 (305)
T ss_pred CCCEEEEeCCCc-hHHHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHhcCC--ceEEEEcCCCCHHHHH
Confidence 366888888664 57777776553 345888888763 455555555555443 356788888764211
Q ss_pred --------CCCCCCEEEEcC
Q 009708 403 --------STVKCDKVLLDA 414 (528)
Q Consensus 403 --------~~~~fD~Vl~D~ 414 (528)
..+..|.++.++
T Consensus 84 ~~~~~~~~~~g~iDilVnnA 103 (305)
T PRK08303 84 ALVERIDREQGRLDILVNDI 103 (305)
T ss_pred HHHHHHHHHcCCccEEEECC
Confidence 124689988876
No 474
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=76.61 E-value=19 Score=37.41 Aligned_cols=52 Identities=13% Similarity=0.130 Sum_probs=34.2
Q ss_pred hcCCCCCCeEEEeCCcc-chHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCC
Q 009708 330 VVDPQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVN 386 (528)
Q Consensus 330 ~l~~~~g~~VLDl~aG~-G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~ 386 (528)
...+++|++||=.|+|+ |..++++|+.++ ..+|+++|.++++++.++ .+|.+
T Consensus 182 ~~~~~~g~~VlV~G~g~vG~~a~q~ak~~G-~~~vi~~~~~~~~~~~~~----~~Ga~ 234 (369)
T cd08301 182 VAKVKKGSTVAIFGLGAVGLAVAEGARIRG-ASRIIGVDLNPSKFEQAK----KFGVT 234 (369)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHH----HcCCc
Confidence 34577899988887542 223345555532 337999999999887764 46754
No 475
>PRK07478 short chain dehydrogenase; Provisional
Probab=76.43 E-value=61 Score=31.39 Aligned_cols=78 Identities=15% Similarity=0.024 Sum_probs=52.5
Q ss_pred CCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CCC
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 405 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~~ 405 (528)
+.++|=.|++ |+.+..+++.+. .+.+|+.++.++..++.+...++..+. .+.++.+|+.+.... ..+
T Consensus 6 ~k~~lItGas-~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~~ 82 (254)
T PRK07478 6 GKVAIITGAS-SGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEGG--EAVALAGDVRDEAYAKALVALAVERFG 82 (254)
T ss_pred CCEEEEeCCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--cEEEEEcCCCCHHHHHHHHHHHHHhcC
Confidence 5577766655 666777666543 345899999999888877777766553 367788888764210 124
Q ss_pred CCCEEEEcCCC
Q 009708 406 KCDKVLLDAPC 416 (528)
Q Consensus 406 ~fD~Vl~D~Pc 416 (528)
..|.++.++..
T Consensus 83 ~id~li~~ag~ 93 (254)
T PRK07478 83 GLDIAFNNAGT 93 (254)
T ss_pred CCCEEEECCCC
Confidence 68999987654
No 476
>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B ....
Probab=76.33 E-value=6.5 Score=38.14 Aligned_cols=116 Identities=23% Similarity=0.189 Sum_probs=64.5
Q ss_pred CCc-cchHHHHHHHHcC-CCcEEEEEcCChHHHHH-HHHHHHHcCCCccEEEEcCccccccc----------cCCCCCCE
Q 009708 343 CAA-PGGKTLYMASCLS-GQGLVYAIDINKGRLRI-LNETAKLHQVNSVIRTIHADLRTFAD----------NSTVKCDK 409 (528)
Q Consensus 343 ~aG-~G~kt~~la~~~~-~~~~v~avD~s~~~l~~-~~~n~~~~g~~~~i~~~~~D~~~~~~----------~~~~~fD~ 409 (528)
|+| ++|++..+|+.+. .+.+|+.++.++..++. +++..+..+. .++..|+.+... ...+.+|.
T Consensus 1 g~~~s~GiG~aia~~l~~~Ga~V~~~~~~~~~~~~~~~~l~~~~~~----~~~~~D~~~~~~v~~~~~~~~~~~~g~iD~ 76 (241)
T PF13561_consen 1 GAGSSSGIGRAIARALAEEGANVILTDRNEEKLADALEELAKEYGA----EVIQCDLSDEESVEALFDEAVERFGGRIDI 76 (241)
T ss_dssp STSSTSHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHHHTTS----EEEESCTTSHHHHHHHHHHHHHHHCSSESE
T ss_pred CCCCCCChHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHHHcCC----ceEeecCcchHHHHHHHHHHHhhcCCCeEE
Confidence 344 4677777776553 35689999999998644 3444444452 258888865321 11277898
Q ss_pred EEEcCCCCCC----ccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEc
Q 009708 410 VLLDAPCSGL----GVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYST 465 (528)
Q Consensus 410 Vl~D~Pcsg~----G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysT 465 (528)
++.++..+.. +.+...+.-.|. ..+.....-...+.+.+..+++++|.+++.+
T Consensus 77 lV~~a~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~gsii~is 133 (241)
T PF13561_consen 77 LVNNAGISPPSNVEKPLLDLSEEDWD---KTFDINVFSPFLLAQAALPLMKKGGSIINIS 133 (241)
T ss_dssp EEEEEESCTGGGTSSSGGGSHHHHHH---HHHHHHTHHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred EEecccccccccCCCChHhCCHHHHH---HHHHHHHHHHHHHHHHHHHHHhhCCCccccc
Confidence 8876544322 111111111111 1122222234456777777888889887653
No 477
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=76.31 E-value=41 Score=32.71 Aligned_cols=77 Identities=12% Similarity=-0.022 Sum_probs=47.8
Q ss_pred CCeEEEeCCcc-chHHHHHHHHcC-CCcEEEEEcCC------------hHHHHHHHHHHHHcCCCccEEEEcCccccccc
Q 009708 336 GQSIVDCCAAP-GGKTLYMASCLS-GQGLVYAIDIN------------KGRLRILNETAKLHQVNSVIRTIHADLRTFAD 401 (528)
Q Consensus 336 g~~VLDl~aG~-G~kt~~la~~~~-~~~~v~avD~s------------~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~ 401 (528)
+.+||=.|++. |+.+..++..+. .+.+|+.++.+ +.... +...++..+ ..+.++..|+.+...
T Consensus 5 ~k~vlItGas~~~giG~~la~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~D~~~~~~ 81 (256)
T PRK12748 5 KKIALVTGASRLNGIGAAVCRRLAAKGIDIFFTYWSPYDKTMPWGMHDKEPVL-LKEEIESYG--VRCEHMEIDLSQPYA 81 (256)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEcCCccccccccccchhhHHH-HHHHHHhcC--CeEEEEECCCCCHHH
Confidence 56788888775 688888777663 23488888776 22222 333344333 247888999876432
Q ss_pred c---------CCCCCCEEEEcCC
Q 009708 402 N---------STVKCDKVLLDAP 415 (528)
Q Consensus 402 ~---------~~~~fD~Vl~D~P 415 (528)
. ..+.+|.|+..+-
T Consensus 82 ~~~~~~~~~~~~g~id~vi~~ag 104 (256)
T PRK12748 82 PNRVFYAVSERLGDPSILINNAA 104 (256)
T ss_pred HHHHHHHHHHhCCCCCEEEECCC
Confidence 1 1246898887653
No 478
>PRK05875 short chain dehydrogenase; Provisional
Probab=76.17 E-value=55 Score=32.17 Aligned_cols=80 Identities=15% Similarity=0.061 Sum_probs=51.9
Q ss_pred CCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccC---------CC
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS---------TV 405 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~---------~~ 405 (528)
+.+||=.|++ |+.+.++++.+- .+.+|++++.++...+.....+...+...++.++.+|+.+..... ..
T Consensus 7 ~k~vlItGas-g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 85 (276)
T PRK05875 7 DRTYLVTGGG-SGIGKGVAAGLVAAGAAVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTDEDQVARAVDAATAWHG 85 (276)
T ss_pred CCEEEEECCC-cHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 5688888855 667887776553 345899999988777665555544322234778888887643110 13
Q ss_pred CCCEEEEcCCC
Q 009708 406 KCDKVLLDAPC 416 (528)
Q Consensus 406 ~fD~Vl~D~Pc 416 (528)
..|.|+..+-.
T Consensus 86 ~~d~li~~ag~ 96 (276)
T PRK05875 86 RLHGVVHCAGG 96 (276)
T ss_pred CCCEEEECCCc
Confidence 68999987643
No 479
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=76.07 E-value=22 Score=36.95 Aligned_cols=96 Identities=15% Similarity=0.120 Sum_probs=52.7
Q ss_pred CCCCCeEEEeCCcc-chHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEE
Q 009708 333 PQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVL 411 (528)
Q Consensus 333 ~~~g~~VLDl~aG~-G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl 411 (528)
.++|++||=.|+|+ |..++++|+.+ +.+|++++.++.+... .++.+|.+..+. ..+...+... ...+|+|+
T Consensus 181 ~~~g~~VlV~G~G~vG~~avq~Ak~~--Ga~vi~~~~~~~~~~~---~~~~~Ga~~vi~--~~~~~~~~~~-~~~~D~vi 252 (360)
T PLN02586 181 TEPGKHLGVAGLGGLGHVAVKIGKAF--GLKVTVISSSSNKEDE---AINRLGADSFLV--STDPEKMKAA-IGTMDYII 252 (360)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCcchhhh---HHHhCCCcEEEc--CCCHHHHHhh-cCCCCEEE
Confidence 46788888887653 33445566654 3478888877655432 234467643111 1111111111 12488887
Q ss_pred EcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 412 LDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 412 ~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
| |+|.. ..+..+++.|++||+++..
T Consensus 253 -d--~~g~~-------------------------~~~~~~~~~l~~~G~iv~v 277 (360)
T PLN02586 253 -D--TVSAV-------------------------HALGPLLGLLKVNGKLITL 277 (360)
T ss_pred -E--CCCCH-------------------------HHHHHHHHHhcCCcEEEEe
Confidence 3 43310 1266678889999998843
No 480
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=76.06 E-value=47 Score=32.24 Aligned_cols=78 Identities=15% Similarity=0.072 Sum_probs=51.9
Q ss_pred CCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CCC
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 405 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~~ 405 (528)
+.+||=.|++ |+.+..+++.+. .+.+|+.++.+...++.+...++..+. .+.++..|+.+.... ..+
T Consensus 11 ~k~vlVtG~s-~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~~~--~~~~~~~D~~~~~~i~~~~~~~~~~~~ 87 (255)
T PRK06113 11 GKCAIITGAG-AGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGG--QAFACRCDITSEQELSALADFALSKLG 87 (255)
T ss_pred CCEEEEECCC-chHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCC--cEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 6788888855 566766666543 345788899888888776666655443 366778888764311 124
Q ss_pred CCCEEEEcCCC
Q 009708 406 KCDKVLLDAPC 416 (528)
Q Consensus 406 ~fD~Vl~D~Pc 416 (528)
.+|.|+..+..
T Consensus 88 ~~d~li~~ag~ 98 (255)
T PRK06113 88 KVDILVNNAGG 98 (255)
T ss_pred CCCEEEECCCC
Confidence 68999886654
No 481
>PRK07985 oxidoreductase; Provisional
Probab=75.92 E-value=59 Score=32.67 Aligned_cols=121 Identities=12% Similarity=-0.023 Sum_probs=66.3
Q ss_pred CCCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCC--hHHHHHHHHHHHHcCCCccEEEEcCccccccc---------c
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDIN--KGRLRILNETAKLHQVNSVIRTIHADLRTFAD---------N 402 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s--~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~---------~ 402 (528)
.+.++|-.|++ |+.+.++++.+. .+.+|+.++.+ ....+.+.+.++..+. .+.++.+|+.+... .
T Consensus 48 ~~k~vlITGas-~gIG~aia~~L~~~G~~Vi~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~ 124 (294)
T PRK07985 48 KDRKALVTGGD-SGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEECGR--KAVLLPGDLSDEKFARSLVHEAHK 124 (294)
T ss_pred CCCEEEEECCC-CcHHHHHHHHHHHCCCEEEEecCCcchhhHHHHHHHHHHcCC--eEEEEEccCCCHHHHHHHHHHHHH
Confidence 35688888864 667777776553 34578777654 3445555555555443 36678888876321 0
Q ss_pred CCCCCCEEEEcCCCCC-CccccCCchhhccCCHHHHHHH----HHHHHHHHHHHhccCcCCCEEEEEc
Q 009708 403 STVKCDKVLLDAPCSG-LGVLSKRADLRWNRRLEDMEEL----KILQDELLDAASLLVKPGGVLVYST 465 (528)
Q Consensus 403 ~~~~fD~Vl~D~Pcsg-~G~~~~~pd~~~~~~~~~~~~l----~~~q~~lL~~a~~~LkpGG~LvysT 465 (528)
..+..|.++.++-.+. .+.+. + .+.++..+. ..-...+++.+...++.+|.+|+.+
T Consensus 125 ~~g~id~lv~~Ag~~~~~~~~~---~----~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~iS 185 (294)
T PRK07985 125 ALGGLDIMALVAGKQVAIPDIA---D----LTSEQFQKTFAINVFALFWLTQEAIPLLPKGASIITTS 185 (294)
T ss_pred HhCCCCEEEECCCCCcCCCChh---h----CCHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCEEEEEC
Confidence 1246798887653211 11111 1 122333221 1122345667777777788877643
No 482
>PRK05717 oxidoreductase; Validated
Probab=75.80 E-value=44 Score=32.43 Aligned_cols=76 Identities=20% Similarity=0.100 Sum_probs=49.0
Q ss_pred CCCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 404 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~ 404 (528)
.|.+||=.|++ |+.+.+++..+. .+.+|+.+|.++.....+.+ ..+ +.+.++..|+.+.... ..
T Consensus 9 ~~k~vlItG~s-g~IG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~---~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 82 (255)
T PRK05717 9 NGRVALVTGAA-RGIGLGIAAWLIAEGWQVVLADLDRERGSKVAK---ALG--ENAWFIAMDVADEAQVAAGVAEVLGQF 82 (255)
T ss_pred CCCEEEEeCCc-chHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH---HcC--CceEEEEccCCCHHHHHHHHHHHHHHh
Confidence 35678877764 777887777664 34589999988766544322 222 2367888998764211 12
Q ss_pred CCCCEEEEcCCC
Q 009708 405 VKCDKVLLDAPC 416 (528)
Q Consensus 405 ~~fD~Vl~D~Pc 416 (528)
+++|.|+.++..
T Consensus 83 g~id~li~~ag~ 94 (255)
T PRK05717 83 GRLDALVCNAAI 94 (255)
T ss_pred CCCCEEEECCCc
Confidence 468999987654
No 483
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=75.78 E-value=32 Score=35.24 Aligned_cols=75 Identities=15% Similarity=0.075 Sum_probs=46.8
Q ss_pred CCeEEEeCCccchHHHHHHHHcCCC---cEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc--CCCCCCEE
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLSGQ---GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN--STVKCDKV 410 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~~~---~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~--~~~~fD~V 410 (528)
|.+||=.|+ +|+.+.++++.+-.. .+|+++|.+......+... .+. ..++++.+|+.+.... .-..+|.|
T Consensus 4 ~k~vLVTGa-tG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~---~~~-~~~~~v~~Dl~d~~~l~~~~~~iD~V 78 (324)
T TIGR03589 4 NKSILITGG-TGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQK---FPA-PCLRFFIGDVRDKERLTRALRGVDYV 78 (324)
T ss_pred CCEEEEeCC-CCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHH---hCC-CcEEEEEccCCCHHHHHHHHhcCCEE
Confidence 567887665 588888888765422 4789998776544332222 121 2478889998875321 12358999
Q ss_pred EEcCC
Q 009708 411 LLDAP 415 (528)
Q Consensus 411 l~D~P 415 (528)
+..+-
T Consensus 79 ih~Ag 83 (324)
T TIGR03589 79 VHAAA 83 (324)
T ss_pred EECcc
Confidence 87554
No 484
>PRK07832 short chain dehydrogenase; Provisional
Probab=75.73 E-value=55 Score=32.23 Aligned_cols=76 Identities=16% Similarity=0.026 Sum_probs=45.9
Q ss_pred EEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccc---------cCCCCCC
Q 009708 339 IVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD---------NSTVKCD 408 (528)
Q Consensus 339 VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~---------~~~~~fD 408 (528)
+|=.|+ +|+.+..+++.+- .+..|+.++.++..++.+.+.+...+.. .+.++..|+.+... ......|
T Consensus 3 vlItGa-s~giG~~la~~la~~G~~vv~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~id 80 (272)
T PRK07832 3 CFVTGA-ASGIGRATALRLAAQGAELFLTDRDADGLAQTVADARALGGT-VPEHRALDISDYDAVAAFAADIHAAHGSMD 80 (272)
T ss_pred EEEeCC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCC-cceEEEeeCCCHHHHHHHHHHHHHhcCCCC
Confidence 444444 5677777666443 2457899999888877766666554433 24456677765321 0124689
Q ss_pred EEEEcCCC
Q 009708 409 KVLLDAPC 416 (528)
Q Consensus 409 ~Vl~D~Pc 416 (528)
.|+..+..
T Consensus 81 ~lv~~ag~ 88 (272)
T PRK07832 81 VVMNIAGI 88 (272)
T ss_pred EEEECCCC
Confidence 99886543
No 485
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=75.72 E-value=39 Score=32.91 Aligned_cols=78 Identities=12% Similarity=0.020 Sum_probs=49.1
Q ss_pred CCCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CC
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 404 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~ 404 (528)
.|.+||=.|++ |+.+..+++.+- .+.+|+.++.+ ...+.+.+.+...+ ..+.++..|+.+.... ..
T Consensus 14 ~~k~vlItGas-~gIG~~ia~~l~~~G~~v~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~~~ 89 (258)
T PRK06935 14 DGKVAIVTGGN-TGLGQGYAVALAKAGADIIITTHG-TNWDETRRLIEKEG--RKVTFVQVDLTKPESAEKVVKEALEEF 89 (258)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEeCC-cHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 36688888875 466666666553 34578888877 44555555555544 2377888888764321 02
Q ss_pred CCCCEEEEcCCC
Q 009708 405 VKCDKVLLDAPC 416 (528)
Q Consensus 405 ~~fD~Vl~D~Pc 416 (528)
+.+|.++..+..
T Consensus 90 g~id~li~~ag~ 101 (258)
T PRK06935 90 GKIDILVNNAGT 101 (258)
T ss_pred CCCCEEEECCCC
Confidence 468999886544
No 486
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=75.55 E-value=19 Score=36.61 Aligned_cols=37 Identities=16% Similarity=0.064 Sum_probs=25.5
Q ss_pred ccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCc
Q 009708 345 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNS 387 (528)
Q Consensus 345 G~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~ 387 (528)
+.|..++++|+.+ +.+|++++.++.+.+.+++ +|.+.
T Consensus 155 ~vG~~a~q~a~~~--G~~vi~~~~~~~~~~~~~~----~g~~~ 191 (324)
T cd08291 155 ALGRMLVRLCKAD--GIKVINIVRRKEQVDLLKK----IGAEY 191 (324)
T ss_pred HHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCcE
Confidence 3455556677764 3579999999988877754 57653
No 487
>PRK08264 short chain dehydrogenase; Validated
Probab=75.26 E-value=34 Score=32.74 Aligned_cols=70 Identities=14% Similarity=0.094 Sum_probs=44.8
Q ss_pred CCeEEEeCCccchHHHHHHHHcCC-Cc-EEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc-----CCCCCC
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLSG-QG-LVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-----STVKCD 408 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~~-~~-~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~-----~~~~fD 408 (528)
+.+||=.| |+|+.+.+++..+-. +. +|++++.++..+.. .+ ..+.++.+|+.+.... .....|
T Consensus 6 ~~~vlItG-gsg~iG~~la~~l~~~G~~~V~~~~r~~~~~~~-------~~--~~~~~~~~D~~~~~~~~~~~~~~~~id 75 (238)
T PRK08264 6 GKVVLVTG-ANRGIGRAFVEQLLARGAAKVYAAARDPESVTD-------LG--PRVVPLQLDVTDPASVAAAAEAASDVT 75 (238)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHCCcccEEEEecChhhhhh-------cC--CceEEEEecCCCHHHHHHHHHhcCCCC
Confidence 45777777 477788877776543 33 89999988765432 22 2377888888764321 123579
Q ss_pred EEEEcCC
Q 009708 409 KVLLDAP 415 (528)
Q Consensus 409 ~Vl~D~P 415 (528)
.|+..+-
T Consensus 76 ~vi~~ag 82 (238)
T PRK08264 76 ILVNNAG 82 (238)
T ss_pred EEEECCC
Confidence 8887653
No 488
>PRK06138 short chain dehydrogenase; Provisional
Probab=75.25 E-value=48 Score=31.89 Aligned_cols=79 Identities=11% Similarity=-0.000 Sum_probs=51.6
Q ss_pred CCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CCC
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 405 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~~ 405 (528)
+.++|=.|| +|+.+.++++.+- .+.+|++++.+...+......+. .+ ..+.++.+|+.+.... ...
T Consensus 5 ~k~~lItG~-sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~-~~--~~~~~~~~D~~~~~~~~~~~~~i~~~~~ 80 (252)
T PRK06138 5 GRVAIVTGA-GSGIGRATAKLFAREGARVVVADRDAEAAERVAAAIA-AG--GRAFARQGDVGSAEAVEALVDFVAARWG 80 (252)
T ss_pred CcEEEEeCC-CchHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHh-cC--CeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 557777776 4777877776543 34589999998877766555554 23 3477888898764211 014
Q ss_pred CCCEEEEcCCCCC
Q 009708 406 KCDKVLLDAPCSG 418 (528)
Q Consensus 406 ~fD~Vl~D~Pcsg 418 (528)
.+|.|+..+..+.
T Consensus 81 ~id~vi~~ag~~~ 93 (252)
T PRK06138 81 RLDVLVNNAGFGC 93 (252)
T ss_pred CCCEEEECCCCCC
Confidence 6899998665443
No 489
>PRK06128 oxidoreductase; Provisional
Probab=75.21 E-value=64 Score=32.41 Aligned_cols=120 Identities=14% Similarity=0.009 Sum_probs=66.2
Q ss_pred CCCeEEEeCCccchHHHHHHHHcCC-CcEEEEEcCCh--HHHHHHHHHHHHcCCCccEEEEcCcccccccc---------
Q 009708 335 PGQSIVDCCAAPGGKTLYMASCLSG-QGLVYAIDINK--GRLRILNETAKLHQVNSVIRTIHADLRTFADN--------- 402 (528)
Q Consensus 335 ~g~~VLDl~aG~G~kt~~la~~~~~-~~~v~avD~s~--~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~--------- 402 (528)
.|.+||=.|+ +|+.+..++..+-. +.+|+.+..+. ...+...+.++..|. .+.++.+|+.+....
T Consensus 54 ~~k~vlITGa-s~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~v~~~~~~~~~ 130 (300)
T PRK06128 54 QGRKALITGA-DSGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQAEGR--KAVALPGDLKDEAFCRQLVERAVK 130 (300)
T ss_pred CCCEEEEecC-CCcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHHcCC--eEEEEecCCCCHHHHHHHHHHHHH
Confidence 3667888885 56777777766532 34676665543 234444445555453 366788888764211
Q ss_pred CCCCCCEEEEcCCCCC-CccccCCchhhccCCHHHHHHH----HHHHHHHHHHHhccCcCCCEEEEE
Q 009708 403 STVKCDKVLLDAPCSG-LGVLSKRADLRWNRRLEDMEEL----KILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 403 ~~~~fD~Vl~D~Pcsg-~G~~~~~pd~~~~~~~~~~~~l----~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
..+..|.|+.++-... .+.+ .+ .+.++.... ..-...+++.+...++++|.+|+.
T Consensus 131 ~~g~iD~lV~nAg~~~~~~~~---~~----~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~ 190 (300)
T PRK06128 131 ELGGLDILVNIAGKQTAVKDI---AD----ITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINT 190 (300)
T ss_pred HhCCCCEEEECCcccCCCCCh---hh----CCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEE
Confidence 1246899998764321 1111 11 122222221 222334677777788888888864
No 490
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=75.05 E-value=17 Score=38.82 Aligned_cols=89 Identities=10% Similarity=0.035 Sum_probs=56.5
Q ss_pred CCCCeEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCEEEEc
Q 009708 334 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLD 413 (528)
Q Consensus 334 ~~g~~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D 413 (528)
.+|++|+=+|+|+=|..+....+.. +.+|+.+|.++.++..++. .|.. .+ +..+.. ..+|+|+.
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~-Ga~ViV~d~d~~R~~~A~~----~G~~----~~--~~~e~v----~~aDVVI~- 263 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQ-GARVIVTEVDPICALQAAM----EGYE----VM--TMEEAV----KEGDIFVT- 263 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEECChhhHHHHHh----cCCE----Ec--cHHHHH----cCCCEEEE-
Confidence 4699999999998665554333322 3489999999999876643 5653 11 111111 35798875
Q ss_pred CCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHH-hccCcCCCEEEEEc
Q 009708 414 APCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAA-SLLVKPGGVLVYST 465 (528)
Q Consensus 414 ~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a-~~~LkpGG~LvysT 465 (528)
|+| . ..++..+ ...+|+||+++...
T Consensus 264 --atG--~-----------------------~~~i~~~~l~~mk~GgilvnvG 289 (413)
T cd00401 264 --TTG--N-----------------------KDIITGEHFEQMKDGAIVCNIG 289 (413)
T ss_pred --CCC--C-----------------------HHHHHHHHHhcCCCCcEEEEeC
Confidence 433 1 1135554 88899999998654
No 491
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=74.67 E-value=35 Score=34.53 Aligned_cols=97 Identities=15% Similarity=0.157 Sum_probs=56.7
Q ss_pred cCCCCCCeEEEeCCc-cchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccccCCCCCCE
Q 009708 331 VDPQPGQSIVDCCAA-PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDK 409 (528)
Q Consensus 331 l~~~~g~~VLDl~aG-~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~~~~~fD~ 409 (528)
....+|++||-.|+| .|..+..+|+.+ +.+|++++.++.+.+.++ ..|.+. ++..+-..........+|.
T Consensus 158 ~~~~~~~~vlI~g~g~iG~~~~~~a~~~--G~~v~~~~~~~~~~~~~~----~~g~~~---~~~~~~~~~~~~~~~~~d~ 228 (330)
T cd08245 158 AGPRPGERVAVLGIGGLGHLAVQYARAM--GFETVAITRSPDKRELAR----KLGADE---VVDSGAELDEQAAAGGADV 228 (330)
T ss_pred hCCCCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHH----HhCCcE---EeccCCcchHHhccCCCCE
Confidence 456778889888775 455555666654 357999999988876663 345432 1111111111001235898
Q ss_pred EEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEE
Q 009708 410 VLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 410 Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvys 464 (528)
|+- |.+.+ ..+..+++.|+++|+++..
T Consensus 229 vi~---~~~~~-------------------------~~~~~~~~~l~~~G~~i~~ 255 (330)
T cd08245 229 ILV---TVVSG-------------------------AAAEAALGGLRRGGRIVLV 255 (330)
T ss_pred EEE---CCCcH-------------------------HHHHHHHHhcccCCEEEEE
Confidence 873 32211 1256678889999988754
No 492
>PRK07578 short chain dehydrogenase; Provisional
Probab=74.01 E-value=20 Score=33.42 Aligned_cols=103 Identities=19% Similarity=0.139 Sum_probs=54.3
Q ss_pred eEEEeCCccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCccccccc-----cCCCCCCEEEE
Q 009708 338 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-----NSTVKCDKVLL 412 (528)
Q Consensus 338 ~VLDl~aG~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~-----~~~~~fD~Vl~ 412 (528)
++|=.|+ +|+.+..+++.+....+|++++.++. .+..|+.+... ..-++.|.|+.
T Consensus 2 ~vlItGa-s~giG~~la~~l~~~~~vi~~~r~~~-------------------~~~~D~~~~~~~~~~~~~~~~id~lv~ 61 (199)
T PRK07578 2 KILVIGA-SGTIGRAVVAELSKRHEVITAGRSSG-------------------DVQVDITDPASIRALFEKVGKVDAVVS 61 (199)
T ss_pred eEEEEcC-CcHHHHHHHHHHHhcCcEEEEecCCC-------------------ceEecCCChHHHHHHHHhcCCCCEEEE
Confidence 4666665 57788888876643367888876543 12234332111 01146898887
Q ss_pred cCCCCCCccccCCchhhccCCHHHHHHH----HHHHHHHHHHHhccCcCCCEEEEEcCC
Q 009708 413 DAPCSGLGVLSKRADLRWNRRLEDMEEL----KILQDELLDAASLLVKPGGVLVYSTCS 467 (528)
Q Consensus 413 D~Pcsg~G~~~~~pd~~~~~~~~~~~~l----~~~q~~lL~~a~~~LkpGG~LvysTcs 467 (528)
++-....+.+.. .+.++..+. ..-...+++.+...++++|.+++.++.
T Consensus 62 ~ag~~~~~~~~~-------~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~iss~ 113 (199)
T PRK07578 62 AAGKVHFAPLAE-------MTDEDFNVGLQSKLMGQVNLVLIGQHYLNDGGSFTLTSGI 113 (199)
T ss_pred CCCCCCCCchhh-------CCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEccc
Confidence 654432222211 122222211 122234566666777788988877654
No 493
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=73.99 E-value=23 Score=37.53 Aligned_cols=113 Identities=19% Similarity=0.235 Sum_probs=59.2
Q ss_pred cCCCCCCeEEEeCCcc-chHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEc-Ccccc-cccc-CCCC
Q 009708 331 VDPQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIH-ADLRT-FADN-STVK 406 (528)
Q Consensus 331 l~~~~g~~VLDl~aG~-G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~-~D~~~-~~~~-~~~~ 406 (528)
..+++|++||=.|+|+ |..++++|+.++ ...|+++|.++.+++.+++ +|.. .+.... .+... +... ....
T Consensus 181 ~~~~~g~~VlV~G~G~iG~~aiqlAk~~G-a~~vi~~d~~~~r~~~a~~----~Ga~-~v~~~~~~~~~~~v~~~~~~~g 254 (393)
T TIGR02819 181 AGVGPGSTVYIAGAGPVGLAAAASAQLLG-AAVVIVGDLNPARLAQARS----FGCE-TVDLSKDATLPEQIEQILGEPE 254 (393)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCHHHHHHHHH----cCCe-EEecCCcccHHHHHHHHcCCCC
Confidence 4567888887776654 333445666543 3456778999888877654 5653 121111 12211 1111 1245
Q ss_pred CCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHH-HHHHHHhccCcCCCEEEEE
Q 009708 407 CDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQD-ELLDAASLLVKPGGVLVYS 464 (528)
Q Consensus 407 fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~-~lL~~a~~~LkpGG~Lvys 464 (528)
+|+||- |+|.-.-. .+ +.. .+.+. ..++.+..++++||++++.
T Consensus 255 ~Dvvid---~~G~~~~~-~~---~~~--------~~~~~~~~~~~~~~~~~~~G~i~~~ 298 (393)
T TIGR02819 255 VDCAVD---CVGFEARG-HG---HDG--------KKEAPATVLNSLMEVTRVGGAIGIP 298 (393)
T ss_pred CcEEEE---CCCCcccc-cc---ccc--------cccchHHHHHHHHHHhhCCCEEEEe
Confidence 898763 44421000 00 000 00011 2488899999999998853
No 494
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=73.91 E-value=51 Score=32.07 Aligned_cols=75 Identities=20% Similarity=0.082 Sum_probs=45.4
Q ss_pred CCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CCC
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 405 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~~ 405 (528)
|..+|=.|+ +|+.+..+++.+. .+.+|+++|.+.. ....+.+...+. .+..+..|+.+.... ..+
T Consensus 10 ~k~~lItG~-~~gIG~a~a~~l~~~G~~vv~~~~~~~--~~~~~~~~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 84 (253)
T PRK08993 10 GKVAVVTGC-DTGLGQGMALGLAEAGCDIVGINIVEP--TETIEQVTALGR--RFLSLTADLRKIDGIPALLERAVAEFG 84 (253)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHCCCEEEEecCcch--HHHHHHHHhcCC--eEEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 567777776 5677887777653 3458888887643 223333444332 367788888763211 124
Q ss_pred CCCEEEEcCC
Q 009708 406 KCDKVLLDAP 415 (528)
Q Consensus 406 ~fD~Vl~D~P 415 (528)
..|.++.++-
T Consensus 85 ~~D~li~~Ag 94 (253)
T PRK08993 85 HIDILVNNAG 94 (253)
T ss_pred CCCEEEECCC
Confidence 6898887653
No 495
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=73.89 E-value=30 Score=35.96 Aligned_cols=102 Identities=16% Similarity=0.219 Sum_probs=57.8
Q ss_pred hcCCCCCCeEEEeCCcc-chHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcC--cccccc-ccCCC
Q 009708 330 VVDPQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHA--DLRTFA-DNSTV 405 (528)
Q Consensus 330 ~l~~~~g~~VLDl~aG~-G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~--D~~~~~-~~~~~ 405 (528)
...+++|++||=.|+|+ |..+.++|+.++ ...|+++|.++.+++.++ .+|.+..+..... |..... .....
T Consensus 181 ~~~~~~g~~VlV~G~G~vG~~a~~~ak~~G-~~~vi~~~~~~~~~~~~~----~lGa~~~i~~~~~~~~~~~~v~~~~~~ 255 (368)
T cd08300 181 TAKVEPGSTVAVFGLGAVGLAVIQGAKAAG-ASRIIGIDINPDKFELAK----KFGATDCVNPKDHDKPIQQVLVEMTDG 255 (368)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHH----HcCCCEEEcccccchHHHHHHHHHhCC
Confidence 34577899998887643 223345555532 337999999999987664 3576532221111 111111 11123
Q ss_pred CCCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCC-CEEEEE
Q 009708 406 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPG-GVLVYS 464 (528)
Q Consensus 406 ~fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpG-G~Lvys 464 (528)
.+|.|+- |+|.. ..+..+.+.++++ |+++..
T Consensus 256 g~d~vid---~~g~~-------------------------~~~~~a~~~l~~~~G~~v~~ 287 (368)
T cd08300 256 GVDYTFE---CIGNV-------------------------KVMRAALEACHKGWGTSVII 287 (368)
T ss_pred CCcEEEE---CCCCh-------------------------HHHHHHHHhhccCCCeEEEE
Confidence 6898873 44311 1266778888886 887743
No 496
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=73.61 E-value=35 Score=34.62 Aligned_cols=102 Identities=24% Similarity=0.253 Sum_probs=57.1
Q ss_pred HhcCCCCCCeEEEeCCcc-chHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEc-CccccccccCCCC
Q 009708 329 AVVDPQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIH-ADLRTFADNSTVK 406 (528)
Q Consensus 329 ~~l~~~~g~~VLDl~aG~-G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~-~D~~~~~~~~~~~ 406 (528)
.....++|++||=.|+|+ |..++++|..+. +.+|++++-+++..+.++ ..|.+..+.... .+.........+.
T Consensus 156 ~~~~~~~g~~vlV~g~g~vG~~~~~la~~~~-g~~v~~~~~~~~~~~~~~----~~g~~~v~~~~~~~~~~~~v~~~~~~ 230 (338)
T PRK09422 156 KVSGIKPGQWIAIYGAGGLGNLALQYAKNVF-NAKVIAVDINDDKLALAK----EVGADLTINSKRVEDVAKIIQEKTGG 230 (338)
T ss_pred HhcCCCCCCEEEEECCcHHHHHHHHHHHHhC-CCeEEEEeCChHHHHHHH----HcCCcEEecccccccHHHHHHHhcCC
Confidence 445677888888887532 334455555421 458999999999887774 356543111100 1111111111124
Q ss_pred CCEEEEcCCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEE
Q 009708 407 CDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVY 463 (528)
Q Consensus 407 fD~Vl~D~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~Lvy 463 (528)
+|.++.+.. .+ ..+..+++.|+++|+++.
T Consensus 231 ~d~vi~~~~---~~-------------------------~~~~~~~~~l~~~G~~v~ 259 (338)
T PRK09422 231 AHAAVVTAV---AK-------------------------AAFNQAVDAVRAGGRVVA 259 (338)
T ss_pred CcEEEEeCC---CH-------------------------HHHHHHHHhccCCCEEEE
Confidence 786665421 11 136778888999999884
No 497
>PRK06179 short chain dehydrogenase; Provisional
Probab=73.59 E-value=27 Score=34.31 Aligned_cols=71 Identities=15% Similarity=0.087 Sum_probs=45.2
Q ss_pred CCeEEEeCCccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------CCC
Q 009708 336 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 405 (528)
Q Consensus 336 g~~VLDl~aG~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~~~ 405 (528)
+..||=.|+ +|+.+.+++..+. .+.+|++++.++..... .. .++++.+|+.+.... ..+
T Consensus 4 ~~~vlVtGa-sg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~---------~~-~~~~~~~D~~d~~~~~~~~~~~~~~~g 72 (270)
T PRK06179 4 SKVALVTGA-SSGIGRATAEKLARAGYRVFGTSRNPARAAP---------IP-GVELLELDVTDDASVQAAVDEVIARAG 72 (270)
T ss_pred CCEEEEecC-CCHHHHHHHHHHHHCCCEEEEEeCChhhccc---------cC-CCeeEEeecCCHHHHHHHHHHHHHhCC
Confidence 446777774 5788888877653 34589999988655421 12 266788888764211 124
Q ss_pred CCCEEEEcCCCC
Q 009708 406 KCDKVLLDAPCS 417 (528)
Q Consensus 406 ~fD~Vl~D~Pcs 417 (528)
.+|.|+.++-.+
T Consensus 73 ~~d~li~~ag~~ 84 (270)
T PRK06179 73 RIDVLVNNAGVG 84 (270)
T ss_pred CCCEEEECCCCC
Confidence 689999865443
No 498
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=73.55 E-value=33 Score=35.74 Aligned_cols=53 Identities=15% Similarity=0.193 Sum_probs=36.3
Q ss_pred hcCCCCCCeEEEeCCcc-chHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHHHcCCCc
Q 009708 330 VVDPQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNS 387 (528)
Q Consensus 330 ~l~~~~g~~VLDl~aG~-G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~~~g~~~ 387 (528)
...+++|++||=.|||+ |..++++|+.++ ..+|+++|.++++++.+++ +|.+.
T Consensus 180 ~~~~~~g~~VlV~G~G~iG~~a~q~Ak~~G-~~~Vi~~~~~~~~~~~a~~----~Ga~~ 233 (368)
T TIGR02818 180 TAKVEEGDTVAVFGLGGIGLSVIQGARMAK-ASRIIAIDINPAKFELAKK----LGATD 233 (368)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH----hCCCe
Confidence 34577899999888754 334456666542 2379999999999887743 56653
No 499
>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional
Probab=73.53 E-value=46 Score=32.70 Aligned_cols=79 Identities=9% Similarity=-0.081 Sum_probs=45.6
Q ss_pred CCCeEEEeCC-ccchHHHHHHHHcC-CCcEEEEEcCChHHHHHHHHHHHHcCCCccEEEEcCcccccccc---------C
Q 009708 335 PGQSIVDCCA-APGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------S 403 (528)
Q Consensus 335 ~g~~VLDl~a-G~G~kt~~la~~~~-~~~~v~avD~s~~~l~~~~~n~~~~g~~~~i~~~~~D~~~~~~~---------~ 403 (528)
.+.+||=.|+ |++|.+..+++.+- .+.+|+.++......+.+++..+..+- ..++..|+.+.... .
T Consensus 5 ~~k~vlItGas~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~---~~~~~~Dv~d~~~v~~~~~~~~~~ 81 (260)
T PRK06997 5 AGKRILITGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEFGS---DLVFPCDVASDEQIDALFASLGQH 81 (260)
T ss_pred CCcEEEEeCCCCCCcHHHHHHHHHHHCCCeEEEEccchHHHHHHHHHHHhcCC---cceeeccCCCHHHHHHHHHHHHHH
Confidence 3678888887 57788888776653 345777765442222333333333331 23567787653211 1
Q ss_pred CCCCCEEEEcCCC
Q 009708 404 TVKCDKVLLDAPC 416 (528)
Q Consensus 404 ~~~fD~Vl~D~Pc 416 (528)
.+.+|.++.++-.
T Consensus 82 ~g~iD~lvnnAG~ 94 (260)
T PRK06997 82 WDGLDGLVHSIGF 94 (260)
T ss_pred hCCCcEEEEcccc
Confidence 2579999987643
No 500
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=73.45 E-value=34 Score=36.83 Aligned_cols=114 Identities=18% Similarity=0.263 Sum_probs=66.0
Q ss_pred ccchHHHHHHHHcCCCcEEEEEcCChHHHHHHHHHHH-----------HcCCCccEEEEcCccccccccCCCCCCEEEEc
Q 009708 345 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAK-----------LHQVNSVIRTIHADLRTFADNSTVKCDKVLLD 413 (528)
Q Consensus 345 G~G~kt~~la~~~~~~~~v~avD~s~~~l~~~~~n~~-----------~~g~~~~i~~~~~D~~~~~~~~~~~fD~Vl~D 413 (528)
|.|..++.+|..+..+-.|+++|+++.+++.+++-.. ..| .+.+ ..+... ....|+||+-
T Consensus 13 GlGyvGlpmA~~la~~~~V~g~D~~~~~ve~l~~G~~~~~e~~~~~l~~~g---~l~~-t~~~~~-----~~~advvii~ 83 (425)
T PRK15182 13 GLGYVGLPLAVEFGKSRQVVGFDVNKKRILELKNGVDVNLETTEEELREAR---YLKF-TSEIEK-----IKECNFYIIT 83 (425)
T ss_pred CcCcchHHHHHHHhcCCEEEEEeCCHHHHHHHHCcCCCCCCCCHHHHHhhC---CeeE-EeCHHH-----HcCCCEEEEE
Confidence 6677777777766555789999999999988762110 111 1111 112111 1357999886
Q ss_pred CCCCCCccccCCchhhccCCHHHHHHHHHHHHHHHHHHhccCcCCCEEEEEcCCCCchhhHHHHHHHHhh
Q 009708 414 APCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASLLVKPGGVLVYSTCSIDPEENEERVEAFLLR 483 (528)
Q Consensus 414 ~Pcsg~G~~~~~pd~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpGG~LvysTcs~~~~Ene~~v~~~l~~ 483 (528)
.|..... ...+|. ..+... .+.....+++|. +|....|+.|...++.+..++++
T Consensus 84 Vptp~~~--~~~~dl------~~v~~a-------~~~i~~~l~~g~-lVI~~STv~pgtt~~~~~~~l~~ 137 (425)
T PRK15182 84 VPTPINT--YKQPDL------TPLIKA-------SETVGTVLNRGD-IVVYESTVYPGCTEEECVPILAR 137 (425)
T ss_pred cCCCCCC--CCCcch------HHHHHH-------HHHHHHhcCCCC-EEEEecCCCCcchHHHHHHHHHh
Confidence 6653111 112222 122111 345566677755 55556688888888888888876
Done!