BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009709
(528 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1M21|A Chain A, Crystal Structure Analysis Of The Peptide Amidase Pam In
Complex With The Competitive Inhibitor Chymostatin
pdb|1M21|B Chain B, Crystal Structure Analysis Of The Peptide Amidase Pam In
Complex With The Competitive Inhibitor Chymostatin
pdb|1M22|A Chain A, X-Ray Structure Of Native Peptide Amidase From
Stenotrophomonas Maltophilia At 1.4 A
pdb|1M22|B Chain B, X-Ray Structure Of Native Peptide Amidase From
Stenotrophomonas Maltophilia At 1.4 A
Length = 503
Score = 287 bits (735), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 198/513 (38%), Positives = 275/513 (53%), Gaps = 40/513 (7%)
Query: 35 FTIIEATIDEIQTAFDQNKLTSTQLVEFYITQIETLN---PRLRSVIEVNPDARSQAEKA 91
F E + ++Q +L ST L + Y+ +I L+ PRLR+VIE+NPDA +A +
Sbjct: 6 FPYAETDVADLQARMTAGELDSTTLTQAYLQRIAALDRTGPRLRAVIELNPDALKEAAER 65
Query: 92 DLARKRNQGRRFLGELHGIPVLLKDTFATKDKLNTSAGSYALVGSVVPRDATVVERLRDA 151
D R+ + G LHGIP+LLKD + TSAGS AL G P DA +V RLRDA
Sbjct: 66 DRERRDGR---LRGPLHGIPLLLKDNI-NAAPMATSAGSLALQG-FRPDDAYLVRRLRDA 120
Query: 152 GAVILGKASLTEWYSFRALGKIPNGWCARAGQAKNPYLXXXXXXXXXXXXXXXXXXNMVT 211
GAV+LGK +L+EW +FR I +GW AR GQ +NPY N+ +
Sbjct: 121 GAVVLGKTNLSEWANFRGNDSI-SGWSARGGQTRNPYRISHSPCGSSSGSAVAVAANLAS 179
Query: 212 VSLGSETHGSILCPADRNSVVGLKPTVGLTSRAGVIPVLPQHDTIGAISRTVSDAVYLLD 271
V++G+ET GSI+CPA N VVGLKPTVGL SR G+IP+ DT G ++R+V+DA +L
Sbjct: 180 VAIGTETDGSIVCPAAINGVVGLKPTVGLVSRDGIIPISFSQDTAGPMARSVADAAAVLT 239
Query: 272 VIVGFDSRDYEATSEAARYIPVGGYKQFLNENGLKGKRLGVVRNLFSNALNGSTVITAFE 331
I G D D + R V Y L+ GL+GKR+G+++ L + E
Sbjct: 240 AIAGRDDADPATATMPGRA--VYDYTARLDPQGLRGKRIGLLQTPL---LKYRGMPPLIE 294
Query: 332 NHLNTLRQSGATIVDDLEMANVDVISNPGKSGELTAMLAGFKIALNEYLQELVSSPVRSL 391
LR++GA +V +E+ N + E T +L FK L Y +P+RSL
Sbjct: 295 QAATELRRAGAVVV-PVELPNQGAWAE----AERTLLLYEFKAGLERYFNTH-RAPLRSL 348
Query: 392 ADVIAFNQNNADMEKTKEYGQGTFISAEKTSGFGEKE--RKAVELMEKLSQDGIEKLMTE 449
AD+IAFNQ ++ E +GQ + A+ T+G + R + +GI+ +
Sbjct: 349 ADLIAFNQAHSKQE-LGLFGQELLVEADATAGLADPAYIRARSDARRLAGPEGIDAALAA 407
Query: 450 NELDALVTPGTRVI-PV--------------LALGGYPGITVPAGYEGNQMPFGICFGGL 494
++LDALV P T V P+ A+ GYP +TVP G + + +P G+ F G
Sbjct: 408 HQLDALVAPTTGVAWPIRSEGDDFPGESYSAAAVAGYPSLTVPMG-QIDGLPVGLLFMGT 466
Query: 495 KGTEPKLIEIAYAFEQATMIRRPP-FVTPFWID 526
+EPKLIE+AYA+EQ T RRPP F T ID
Sbjct: 467 AWSEPKLIEMAYAYEQRTRARRPPHFDTDALID 499
>pdb|3H0L|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|D Chain D, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|G Chain G, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|J Chain J, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|M Chain M, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|P Chain P, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|S Chain S, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|V Chain V, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|D Chain D, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|G Chain G, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|J Chain J, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|M Chain M, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|P Chain P, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|S Chain S, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|V Chain V, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|D Chain D, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|G Chain G, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|J Chain J, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|M Chain M, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|P Chain P, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|S Chain S, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|V Chain V, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
Length = 478
Score = 108 bits (271), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 122/506 (24%), Positives = 213/506 (42%), Gaps = 72/506 (14%)
Query: 37 IIEATIDEIQTAFDQNKLTSTQLVEFYITQIETLNPRLRSVIEVNPDARSQAEKADLARK 96
+ + ++ E++ + +++ ++VE + + ++++ I P ++A+ ++
Sbjct: 2 LWKKSLSELRELLKRGEVSPKEVVESFYDRYNQTEEKVKAYI--TPLYGKALKQAESLKE 59
Query: 97 RNQGRRFLGELHGIPVLLKDTFATKDKLNTSAGSYALVGSVVPRDATVVERLRDAGAVIL 156
R L GIP+ +KD + + T+ S L V P DATV+ERL+ AGA+I+
Sbjct: 60 REL------PLFGIPIAVKDNILVEGE-KTTCASKILENFVAPYDATVIERLKKAGALIV 112
Query: 157 GKASLTEWYSFRALGKIPNGWCARAGQAKNPYLXXXXXXXXXXXXXXXXXXNMVTVSLGS 216
GK +L E+ A+G + KNP+ VSLGS
Sbjct: 113 GKTNLDEF----AMGSSTE--YSAFFPTKNPWDLERVPGGSSGGSAASVAVLSAPVSLGS 166
Query: 217 ETHGSILCPADRNSVVGLKPTVGLTSRAGVIPVLPQHDTIGAISRTVSDAVYLLDVIVGF 276
+T GSI PA V+G+KPT G SR G++ D IG R D +L+VI G+
Sbjct: 167 DTGGSIRQPASFCGVIGIKPTYGRVSRYGLVAFASSLDQIGVFGRRTEDVALVLEVISGW 226
Query: 277 DSRDYEATSEAARYIPVGGYKQFLNENGLKGKRLGVVRNLFSNALNGSTVITAFENHLNT 336
D +D S +A+ +PV + + + + +KG ++G+ + F L V AFEN +
Sbjct: 227 DEKD----STSAK-VPVPEWSEEVKKE-VKGLKIGLPKEFFEYELQ-PQVKEAFENFIKE 279
Query: 337 LRQSGATIVDDLEMANVD------VISNPGKSGELTAMLAGFKIALNEYLQELVSSPVRS 390
L + G I ++ + +V I P ++ A G + +
Sbjct: 280 LEKEGFEI-KEVSLPHVKYSIPTYYIIAPSEASSNLARYDGVRYGYR----------AKE 328
Query: 391 LADVIAFNQNNADM----EKTKEYGQGTF-ISAEKTSGFGEKERKAVELMEKLSQDGIEK 445
D+ D E + GTF +SA + K +K L ++ D ++
Sbjct: 329 YKDIFEMYARTRDEGFGPEVKRRIMLGTFALSAGYYDAYYLKAQKVRRL---ITNDFLKA 385
Query: 446 LMTENELDALVTPGTRVIPV---------------------LALGGYPGITVPAGYEGNQ 484
E+D + +P T +P L G P I++P ++ +
Sbjct: 386 F---EEVDVIASPTTPTLPFKFGERLENPIEMYLSDILTVPANLAGLPAISIPIAWK-DG 441
Query: 485 MPFGICFGGLKGTEPKLIEIAYAFEQ 510
+P G G E L++I+Y +EQ
Sbjct: 442 LPVGGQLIGKHWDETTLLQISYLWEQ 467
>pdb|3AL0|A Chain A, Crystal Structure Of The Glutamine Transamidosome From
Thermotoga Maritima In The Glutamylation State
Length = 475
Score = 108 bits (270), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 130/498 (26%), Positives = 212/498 (42%), Gaps = 108/498 (21%)
Query: 58 QLVEFYITQIETLNPRLRSVIEVNPDARSQAEKADLARKRNQGRRFLGELHGIPVLLKDT 117
+L + + I+ L+P +++ I V E + +K G+ GIPV +KD
Sbjct: 24 KLPQLSLETIKRLDPHVKAFISVR-------ENVSVEKK--------GKFWGIPVAIKDN 68
Query: 118 FATKDKLNTSAGSYALVGSVVPRDATVVERLRDAGAVILGKASLTEWYSFRALGKIPNGW 177
T + T+ S L DATVV+++++AG V++GKA+L E+ A+G
Sbjct: 69 ILTLG-MRTTCASRILENYESVFDATVVKKMKEAGFVVVGKANLDEF----AMG----SS 119
Query: 178 CARAG--QAKNPYLXXXXXXXXXXXXXXXXXXNMVTVSLGSETHGSILCPADRNSVVGLK 235
R+ +NP+ MV +LGS+T GS+ PA VVG K
Sbjct: 120 TERSAFFPTRNPWDLERVPGGSSGGSAAAVSAGMVVAALGSDTGGSVRQPASLCGVVGYK 179
Query: 236 PTVGLTSRAGVIPVLPQHDTIGAISRTVSDAVYLLDVIVGFDSRDYEATSEAARYIPVGG 295
PT GL SR G++ D IG I++TV DA L+++I G D D AT+ V
Sbjct: 180 PTYGLVSRYGLVAFASSLDQIGPITKTVRDAAILMEIISGRDEND--ATT-------VNR 230
Query: 296 YKQFLN--ENGLKGKRLGVVRNLFSNALNGSTVITAFENHLNTLRQSGATIVDDLEMANV 353
FL+ E G+ G + V ++ + + V FE L L + GA V+ +++ ++
Sbjct: 231 KVDFLSEIEEGVSGMKFAVPEEIYEHDIE-EGVSERFEEALKLLERLGAK-VERVKIPHI 288
Query: 354 DVISNPGKSGELTAMLAGFKIALNEYLQELVSSPVRSLADVIAFNQNNADMEKTKEYGQG 413
K ++ Y V +P + +++ F+ + + KE G
Sbjct: 289 -------------------KYSVATY---YVIAPAEASSNLARFDGVKYGL-RIKEKGLR 325
Query: 414 TFISAEKTSGFGEKER--------------------KAVELMEKLSQDGIEKLMTENELD 453
+ GFGE+ R KA+++ K+S + E L ++ D
Sbjct: 326 EMYMKTRNVGFGEEVRRRIMIGTFTLSAAYYEAYFNKAMKVRRKISDELNEVL---SQYD 382
Query: 454 ALVTPGTRV---------------------IPVLALGGYPGITVPAGYEGNQMPFGICFG 492
A++TP + V IP L G P I+VP G+ N +P G+
Sbjct: 383 AILTPTSPVTAFKIGEIKDPLTYYLMDIFTIPA-NLAGLPAISVPFGF-SNNLPVGVQVI 440
Query: 493 GLKGTEPKLIEIAYAFEQ 510
G + + K+ IA A E+
Sbjct: 441 GRRFADGKVFRIARAIEK 458
>pdb|2DF4|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab
Complexed With Mn2+
pdb|2DQN|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab
Complexed With Asn
pdb|2G5H|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab
pdb|2G5I|A Chain A, Structure Of Trna-dependent Amidotransferase Gatcab
Complexed With Adp-alf4
pdb|3IP4|A Chain A, The High Resolution Structure Of Gatcab
pdb|2F2A|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab
Complexed With Gln
Length = 485
Score = 104 bits (259), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 128/501 (25%), Positives = 222/501 (44%), Gaps = 66/501 (13%)
Query: 41 TIDEIQTAFDQNKLTSTQLVEFYITQIETLNPRLRSVIEVNPD-ARSQAEKADLARKRNQ 99
+++ + T K+ + +V+ IE +P ++S + ++ + A +A++ D + ++Q
Sbjct: 7 SVENLLTLIKDKKIKPSDVVKDIYDAIEETDPTIKSFLALDKENAIKKAQELDELQAKDQ 66
Query: 100 GRRFLGELHGIPVLLKDTFATKDKLNTSAGSYALVGSVVPRDATVVERLRDAGAVILGKA 159
G+L GIP+ +KD T + L T+ S L G V ++TV+E+L AV++GK
Sbjct: 67 ---MDGKLFGIPMGIKDNIIT-NGLETTCASKMLEGFVPIYESTVMEKLHKENAVLIGKL 122
Query: 160 SLTEWYSFRALGKIPNGWCARAGQAKNPYLXXXXXXXXXXXXXXXXXXNMVTVSLGSETH 219
++ E+ A+G + + + NP+ +V +SLGS+T
Sbjct: 123 NMDEF----AMGG--STETSYFKKTVNPFDHKAVPGGSSGGSAAAVAAGLVPLSLGSDTG 176
Query: 220 GSILCPADRNSVVGLKPTVGLTSRAGVIPVLPQHDTIGAISRTVSDAVYLLDVIVGFDSR 279
GSI PA VVG+KPT G SR G++ D IG ++R V D +L+ I G D
Sbjct: 177 GSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVKDNAIVLEAISGADVN 236
Query: 280 DYEATSEAARYIPVGGYKQFLNENG--LKGKRLGVVRNLFSNALNGSTVITAFENHLNTL 337
D +TS + F +E G +KG ++ + + + V A +N + TL
Sbjct: 237 D--STSAPVDDV------DFTSEIGKDIKGLKVALPKEYLGEGV-ADDVKEAVQNAVETL 287
Query: 338 RQSGATIVDDLEMANVD-------VISNPGKSGELTAMLAGFKIALNEYLQELVSSPVRS 390
+ GA +V+++ + N VI++ S L+ G + + S S
Sbjct: 288 KSLGA-VVEEVSLPNTKFGIPSYYVIASSEASSNLS-RFDGIRYGYH-------SKEAHS 338
Query: 391 LADVIAFNQNNA-DMEKTKEYGQGTFISAEKTSGFGEKERKAVELMEKLSQDGIEKLMTE 449
L ++ +++ E + GTF +SG+ + K + + L ++ +K+ E
Sbjct: 339 LEELYKMSRSEGFGKEVKRRIFLGTFAL---SSGYYDAYYKKSQKVRTLIKNDFDKVF-E 394
Query: 450 NELDALVTP---------GTRVIPVLA------------LGGYPGITVPAGYEGNQMPFG 488
N D +V P G + L L G PGI+VP G + N P G
Sbjct: 395 N-YDVVVGPTAPTTAFNLGEEIDDPLTMYANDLLTTPVNLAGLPGISVPCG-QSNGRPIG 452
Query: 489 ICFGGLKGTEPKLIEIAYAFE 509
+ F G E L +AY +E
Sbjct: 453 LQFIGKPFDEKTLYRVAYQYE 473
>pdb|3KFU|E Chain E, Crystal Structure Of The Transamidosome
pdb|3KFU|H Chain H, Crystal Structure Of The Transamidosome
Length = 471
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 134/498 (26%), Positives = 206/498 (41%), Gaps = 73/498 (14%)
Query: 44 EIQTAFDQNKLTSTQLVEFYITQIETLNPRLRSVIEVNPDARSQAEKADLARKRNQGRRF 103
EI+ + +++ ++ + Y+ +++ L+P L + + +N +AE D
Sbjct: 5 EIRARVARGEVSPLEVAQAYLKRVQELDPGLGAFLSLNERLLEEAEAVDPGLP------- 57
Query: 104 LGELHGIPVLLKDTFATKDKLNTSAGSYALVGSVVPRDATVVERLRDAGAVILGKASLTE 163
L G+ V +KD AT+ L T+AGS L V P +AT V RL+ GA++LGK +L E
Sbjct: 58 ---LAGLVVAVKDNIATRG-LRTTAGSRLLENFVPPYEATAVARLKALGALVLGKTNLDE 113
Query: 164 WYSFRALGKIPNGWCARAGQAKNPYLXXXXXXXXXXXXXXXXXXNMVTVSLGSETHGSIL 223
+ G + + KNP+ ++ ++LGS+T GS+
Sbjct: 114 F------GMGSSTEHSAFFPTKNPFDPDRVPGGSSGGSAAALAADLAPLALGSDTGGSVR 167
Query: 224 CPADRNSVVGLKPTVGLTSRAGVIPVLPQHDTIGAISRTVSDAVYLLDVIVGFDSRDYEA 283
PA V GLKPT G SR G+I D IG ++R+V D L+D G D D +
Sbjct: 168 QPAAFCGVYGLKPTYGRVSRFGLIAYASSLDQIGPMARSVRDLALLMDAAAGPDPLDATS 227
Query: 284 TSEAARYIPVGGYKQFLNENGLKGKRLGVVRNLFSNALNGSTVITAFENHLNTLRQSGAT 343
R+ Q E L RLGVVR + N V A E L R+ G
Sbjct: 228 LDLPPRF-------QEALEGPLPPLRLGVVREALAG--NSPGVERALEEALKVFRELG-- 276
Query: 344 IVDDLEMANVDVISNPGKSGELTAMLAGFKIALNEYLQELVSSPVRSLADVIAFNQNNAD 403
L + V S P A+ A + +A E L A +
Sbjct: 277 ----LSVREVSWPSLP------QALAAYYILAPAEASSNLARYDGTLYGRRAAGEEVEGM 326
Query: 404 MEKTKE-YGQ--------GTFISAEKTSGFGEKERKAVELMEKLSQDGIEKLMTENELDA 454
ME T+ +G GTF+ +SG+ E + + + + L E+D
Sbjct: 327 MEATRALFGLEVKRRVLVGTFV---LSSGYYEAYYGRAQAFRRRLKAEAQALF--REVDL 381
Query: 455 LVTP---------GTRVIPVLA-----------LGGYPGITVPAGYEGNQMPFGICFGGL 494
L+ P G R P+ L G P ++ PAG+EG+ +P G+
Sbjct: 382 LLLPTTPHPAFPFGARRDPLAMYREDLYTVGANLTGLPALSFPAGFEGH-LPVGLQLLAP 440
Query: 495 KGTEPKLIEIAYAFEQAT 512
G + +L+ A AFE+AT
Sbjct: 441 WGEDERLLRAALAFEEAT 458
>pdb|2GI3|A Chain A, Crystal Structure Of Glutamyl-Trna(Gln) Amidotransferase
Subunit A (Tm1272) From Thermotoga Maritima At 1.80 A
Resolution
Length = 476
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 130/498 (26%), Positives = 206/498 (41%), Gaps = 108/498 (21%)
Query: 58 QLVEFYITQIETLNPRLRSVIEVNPDARSQAEKADLARKRNQGRRFLGELHGIPVLLKDT 117
+L + + I+ L+P +++ I V E + +K G+ GIPV +KD
Sbjct: 25 KLPQLSLETIKRLDPHVKAFISVR-------ENVSVEKK--------GKFWGIPVAIKDN 69
Query: 118 FATKDKLNTSAGSYALVGSVVPRDATVVERLRDAGAVILGKASLTEWYSFRALGKIPNGW 177
T T A S L DATVV++ ++AG V++GKA+L E+ A G
Sbjct: 70 ILTLGXRTTCA-SRILENYESVFDATVVKKXKEAGFVVVGKANLDEF----AXG----SS 120
Query: 178 CARAG--QAKNPYLXXXXXXXXXXXXXXXXXXNMVTVSLGSETHGSILCPADRNSVVGLK 235
R+ +NP+ V +LGS+T GS+ PA VVG K
Sbjct: 121 TERSAFFPTRNPWDLERVPGGSSGGSAAAVSAGXVVAALGSDTGGSVRQPASLCGVVGYK 180
Query: 236 PTVGLTSRAGVIPVLPQHDTIGAISRTVSDAVYLLDVIVGFDSRDYEATSEAARYIPVGG 295
PT GL SR G++ D IG I++TV DA L ++I G D D AT+ V
Sbjct: 181 PTYGLVSRYGLVAFASSLDQIGPITKTVRDAAILXEIISGRDEND--ATT-------VNR 231
Query: 296 YKQFLN--ENGLKGKRLGVVRNLFSNALNGSTVITAFENHLNTLRQSGATIVDDLEMANV 353
FL+ E G+ G + V ++ + + V FE L L + GA V+ +++ ++
Sbjct: 232 KVDFLSEIEEGVSGXKFAVPEEIYEHDIE-EGVSERFEEALKLLERLGAK-VERVKIPHI 289
Query: 354 DVISNPGKSGELTAMLAGFKIALNEYLQELVSSPVRSLADVIAFNQNNADMEKTKEYGQG 413
K ++ Y V +P + +++ F+ + + KE G
Sbjct: 290 -------------------KYSVATY---YVIAPAEASSNLARFDGVKYGL-RIKEKGLR 326
Query: 414 TFISAEKTSGFGEKER--------------------KAVELMEKLSQDGIEKLMTENELD 453
+ GFGE+ R KA ++ K+S + E L ++ D
Sbjct: 327 EXYXKTRNVGFGEEVRRRIXIGTFTLSAAYYEAYFNKAXKVRRKISDELNEVL---SQYD 383
Query: 454 ALVTPGTRV---------------------IPVLALGGYPGITVPAGYEGNQMPFGICFG 492
A++TP + V IP L G P I+VP G+ N +P G+
Sbjct: 384 AILTPTSPVTAFKIGEIKDPLTYYLXDIFTIPA-NLAGLPAISVPFGF-SNNLPVGVQVI 441
Query: 493 GLKGTEPKLIEIAYAFEQ 510
G + + K+ IA A E+
Sbjct: 442 GRRFADGKVFRIARAIEK 459
>pdb|3A1K|A Chain A, Crystal Structure Of Rhodococcus Sp. N771 Amidase
Length = 521
Score = 89.4 bits (220), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 120/443 (27%), Positives = 181/443 (40%), Gaps = 66/443 (14%)
Query: 105 GELHGIPVLLKD--TFATKDKLNTSAGSYALVGSVVPRDATVVERLRDAGAVILGKASLT 162
G L G V +KD T A +N GS + G RDATVV RL AGA + GKA +
Sbjct: 86 GVLTGRRVAIKDNVTVAGVPMMN---GSRTVEGFTPSRDATVVTRLLAAGATVAGKA-VC 141
Query: 163 EWYSFRALGKIPNGWCARAGQAKNPYLXXXXXXXXXXXXXXXXXXNMVTVSLGSETHGSI 222
E F P +G +NP+ V ++G + GSI
Sbjct: 142 EDLCFSGSSFTPA-----SGPVRNPWDRQREAGGSSGGSAALVANGDVDFAIGGDQGGSI 196
Query: 223 LCPADRNSVVGLKPTVGLTSRAGVIPVLPQHDTIGAISRTVSDAVYLLDVIVGFDSRDYE 282
PA VVG KPT GL G P+ D +G I+RTV DA +L VI G D D
Sbjct: 197 RIPAAFCGVVGHKPTFGLVPYTGAFPIERTIDHLGPITRTVHDAALMLSVIAGRDGND-- 254
Query: 283 ATSEAARYIPVGGYKQFLNENGLKGKRLGVVRNLFSNALNGSTVITAFENHLNTLRQSGA 342
A + G Y L+ + + G R+G+VR F +A++ V A ++L + G
Sbjct: 255 --PRQADSVEAGDYLSTLDSD-VDGLRIGIVREGFGHAVSQPEVDDAVRAAAHSLTEIGC 311
Query: 343 TIVD-----DLEMANV-DVISNPGKSGELTAMLAGFKIALNE---YLQELVSS-PVRSLA 392
T+ + L ++ +VI+ G + + ML G +N Y EL++ R +
Sbjct: 312 TVEEVNIPWHLHAFHIWNVIATDGGAYQ---MLDGNGYGMNAEGLYDPELMAHFASRRIQ 368
Query: 393 DVIAFNQNNADMEKTKEYGQGTFISAEKTSGFGEKERKAVELMEKLSQDGIEKLMTENEL 452
A ++ + T +G T A +G K R V L + +
Sbjct: 369 HADALSETVKLVALTGHHGITTLGGAS----YG-KARNLVPLARAAYDTALR------QF 417
Query: 453 DALVTPG-------------------TRVIPVLA------LGGYPGITVPAGYEGNQMPF 487
D LV P T+ + ++A + G+P ++VPAG N +P
Sbjct: 418 DVLVMPTLPYVASELPAKDVDRATFITKALGMIANTAPFDVTGHPSLSVPAGLV-NGLPV 476
Query: 488 GICFGGLKGTEPKLIEIAYAFEQ 510
G+ G + ++ + AFE+
Sbjct: 477 GMMITGRHFDDATVLRVGRAFEK 499
>pdb|3A1I|A Chain A, Crystal Structure Of Rhodococcus Sp. N-771 Amidase
Complexed With Benzamide
Length = 521
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 119/443 (26%), Positives = 181/443 (40%), Gaps = 66/443 (14%)
Query: 105 GELHGIPVLLKD--TFATKDKLNTSAGSYALVGSVVPRDATVVERLRDAGAVILGKASLT 162
G L G V +KD T A +N GS + G RDATVV RL AGA + GKA +
Sbjct: 86 GVLTGRRVAIKDNVTVAGVPMMN---GSRTVEGFTPSRDATVVTRLLAAGATVAGKA-VC 141
Query: 163 EWYSFRALGKIPNGWCARAGQAKNPYLXXXXXXXXXXXXXXXXXXNMVTVSLGSETHGSI 222
E F P +G +NP+ V ++G + G+I
Sbjct: 142 EDLCFSGSSFTPA-----SGPVRNPWDRQREAGGSSGGSAALVANGDVDFAIGGDQGGAI 196
Query: 223 LCPADRNSVVGLKPTVGLTSRAGVIPVLPQHDTIGAISRTVSDAVYLLDVIVGFDSRDYE 282
PA VVG KPT GL G P+ D +G I+RTV DA +L VI G D D
Sbjct: 197 RIPAAFCGVVGHKPTFGLVPYTGAFPIERTIDHLGPITRTVHDAALMLSVIAGRDGND-- 254
Query: 283 ATSEAARYIPVGGYKQFLNENGLKGKRLGVVRNLFSNALNGSTVITAFENHLNTLRQSGA 342
A + G Y L+ + + G R+G+VR F +A++ V A ++L + G
Sbjct: 255 --PRQADSVEAGDYLSTLDSD-VDGLRIGIVREGFGHAVSQPEVDDAVRAAAHSLTEIGC 311
Query: 343 TIVD-----DLEMANV-DVISNPGKSGELTAMLAGFKIALNE---YLQELVSS-PVRSLA 392
T+ + L ++ +VI+ G + + ML G +N Y EL++ R +
Sbjct: 312 TVEEVNIPWHLHAFHIWNVIATDGGAYQ---MLDGNGYGMNAEGLYDPELMAHFASRRIQ 368
Query: 393 DVIAFNQNNADMEKTKEYGQGTFISAEKTSGFGEKERKAVELMEKLSQDGIEKLMTENEL 452
A ++ + T +G T A +G K R V L + +
Sbjct: 369 HADALSETVKLVALTGHHGITTLGGAS----YG-KARNLVPLARAAYDTALR------QF 417
Query: 453 DALVTPG-------------------TRVIPVLA------LGGYPGITVPAGYEGNQMPF 487
D LV P T+ + ++A + G+P ++VPAG N +P
Sbjct: 418 DVLVMPTLPYVASELPAKDVDRATFITKALGMIANTAPFDVTGHPSLSVPAGLV-NGLPV 476
Query: 488 GICFGGLKGTEPKLIEIAYAFEQ 510
G+ G + ++ + AFE+
Sbjct: 477 GMMITGRHFDDATVLRVGRAFEK 499
>pdb|2DC0|A Chain A, Crystal Structure Of Amidase
pdb|2DC0|B Chain B, Crystal Structure Of Amidase
Length = 434
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 77/241 (31%), Positives = 109/241 (45%), Gaps = 25/241 (10%)
Query: 84 ARSQAEKADLARKRNQGRRFLGELHGIPVLLKDTFATKDKLNTSAGSYALVGSVVPRDAT 143
AR +A +R Q R G LHG+P+ +KD F K + T AG+ A + +P +A
Sbjct: 45 ARKEALALTEELRRGQVR---GPLHGLPLTVKDLFPVKG-MPTRAGTKAPL-PPLPEEAR 99
Query: 144 VVERLRDAGAVILGKASLTEWYSFRALGKI-PNGWCARAGQAKNPYLXXXXXXXXXXXXX 202
V RLR+AGA++ K + E ALG N W G +N
Sbjct: 100 AVRRLREAGALLFAKTNXHEI----ALGITGENPWT---GPVRNAVDPSRQAGGSSGGSA 152
Query: 203 XXXXXNMVTVSLGSETHGSILCPADRNSVVGLKPTVGLTSRAGVIPVLPQHDTIGAISRT 262
+ SLG++T GSI PA N VVG KP+ G S G +P+ D G ++R+
Sbjct: 153 VAVALGIGLASLGTDTGGSIRIPAGFNGVVGFKPSYGRVSLEGALPLSRSTDHAGPLTRS 212
Query: 263 VSDAVYLLDVIVGFDSRDYEATSEAARYIPVGGYKQFLNENGLKGKRLGV-VRNLFSNAL 321
V DA +L +++ G +S E +P+ FL RLGV VR F+ L
Sbjct: 213 VRDAHFLTEILAG-ESIPLEGVQNPVFGVPL----DFLE------GRLGVEVRKAFTRLL 261
Query: 322 N 322
Sbjct: 262 E 262
>pdb|3A2P|A Chain A, Structure Of 6-Aminohexanoate Cyclic Dimer Hydrolase
Length = 493
Score = 75.1 bits (183), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 74/260 (28%), Positives = 113/260 (43%), Gaps = 35/260 (13%)
Query: 53 KLTSTQLVEFYITQIETLNPRLRSVI-EVNPDARSQAEKADLARKRNQGRRFLGELHGIP 111
+++ T+L+E I ++ +NP + +VI + AR ++E A G G+P
Sbjct: 21 EISRTELLEATIAHVQAVNPEINAVIIPLFEKARRESELAS------------GPFAGVP 68
Query: 112 VLLKD-TFATKDKLNTSA-GSYALVGSVVPRDATVVERLRDAGAVILGKASLTEWYSFRA 169
LLKD T ++ +NTS+ G DA V+R+R AG V+LGK + E
Sbjct: 69 YLLKDLTVVSQGDINTSSIKGMKESGYRADHDAYFVQRMRAAGFVLLGKTNTPE--MGNQ 126
Query: 170 LGKIPNGWCARAGQAKNPYLXXXXXXXXXXXXXXXXXXNMVTVSLGSETHGSILCPADRN 229
+ P W G +NP+ + V+ G++ GS+ PA
Sbjct: 127 VTTEPEAW----GATRNPWNLGRSVGGSSGGSGAAVAAALSPVAHGNDAAGSVRIPASVC 182
Query: 230 SVVGLKPTVGLTSRAGVIPVLPQHDTI------GAISRTVSDAVYLLDVIVGFDSRDYEA 283
VVGLKPT G S P++ D + G +R+V D LLDV+ G D
Sbjct: 183 GVVGLKPTRGRISPG---PLVTDSDNVAGAAHEGLFARSVRDIAALLDVVSGHRPGDTFC 239
Query: 284 TSEAARYIPVGGYKQFLNEN 303
A+R Y Q ++EN
Sbjct: 240 APTASR-----PYAQGISEN 254
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 468 LGGYPGITVPAGYEGNQMPFGICFGGLKGTEPKLIEIAYAFEQA--TMIRRPPFVTP 522
+ G P I++P G + MP G+ G E L+++A E A + RRP + P
Sbjct: 430 VSGQPAISLPIGMSSDGMPIGVQIVAAYGREDLLLQVAAQLEGALPWVARRPQLLNP 486
>pdb|3A2Q|A Chain A, Structure Of 6-Aminohexanoate Cyclic Dimer Hydrolase
Complexed With Substrate
Length = 493
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 73/260 (28%), Positives = 113/260 (43%), Gaps = 35/260 (13%)
Query: 53 KLTSTQLVEFYITQIETLNPRLRSVI-EVNPDARSQAEKADLARKRNQGRRFLGELHGIP 111
+++ T+L+E I ++ +NP + +VI + AR ++E A G G+P
Sbjct: 21 EISRTELLEATIAHVQAVNPEINAVIIPLFEKARRESELAS------------GPFAGVP 68
Query: 112 VLLKD-TFATKDKLNTSA-GSYALVGSVVPRDATVVERLRDAGAVILGKASLTEWYSFRA 169
LLKD T ++ +NTS+ G DA V+R+R AG V+LGK + E
Sbjct: 69 YLLKDLTVVSQGDINTSSIKGMKESGYRADHDAYFVQRMRAAGFVLLGKTNTPE--MGNQ 126
Query: 170 LGKIPNGWCARAGQAKNPYLXXXXXXXXXXXXXXXXXXNMVTVSLGSETHGSILCPADRN 229
+ P W G +NP+ + V+ G++ G++ PA
Sbjct: 127 VTTEPEAW----GATRNPWNLGRSVGGSSGGSGAAVAAALSPVAHGNDAAGAVRIPASVC 182
Query: 230 SVVGLKPTVGLTSRAGVIPVLPQHDTI------GAISRTVSDAVYLLDVIVGFDSRDYEA 283
VVGLKPT G S P++ D + G +R+V D LLDV+ G D
Sbjct: 183 GVVGLKPTRGRISPG---PLVTDSDNVAGAAHEGLFARSVRDIAALLDVVSGHRPGDTFC 239
Query: 284 TSEAARYIPVGGYKQFLNEN 303
A+R Y Q ++EN
Sbjct: 240 APTASR-----PYAQGISEN 254
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 468 LGGYPGITVPAGYEGNQMPFGICFGGLKGTEPKLIEIAYAFEQA--TMIRRPPFVTP 522
+ G P I++P G + MP G+ G E L+++A E A + RRP + P
Sbjct: 430 VSGQPAISLPIGMSSDGMPIGVQIVAAYGREDLLLQVAAQLEGALPWVARRPQLLNP 486
>pdb|4GYR|A Chain A, Granulibacter Bethesdensis Allophanate Hydrolase Apo
pdb|4GYR|B Chain B, Granulibacter Bethesdensis Allophanate Hydrolase Apo
pdb|4GYS|A Chain A, Granulibacter Bethesdensis Allophanate Hydrolase
Co-crystallized With Malonate
pdb|4GYS|B Chain B, Granulibacter Bethesdensis Allophanate Hydrolase
Co-crystallized With Malonate
Length = 621
Score = 68.6 bits (166), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 92/192 (47%), Gaps = 10/192 (5%)
Query: 107 LHGIPVLLKDTFATKDKLNTSAGSYALVGSVVP-RDATVVERLRDAGAVILGKASLTEWY 165
L+G+P +KD L SA A + P RDATVV RLR AGA++LGK +L ++
Sbjct: 95 LYGVPFAVKDNIDVA-GLPCSAACPAF--TYEPDRDATVVARLRAAGAIVLGKTNLDQF- 150
Query: 166 SFRALGKIPNGWCARAGQAKNPYLXXXXXXXXXXXXXXXXXXNMVTVSLGSETHGSILCP 225
A G + G + G + + +V SLG++T GS P
Sbjct: 151 ---ATGLV--GTRSPFGAPRCVFDQDYISGGSSSGSAVAVAAGLVAFSLGTDTAGSGRVP 205
Query: 226 ADRNSVVGLKPTVGLTSRAGVIPVLPQHDTIGAISRTVSDAVYLLDVIVGFDSRDYEATS 285
A N++VG+KPT GL S +GV+P D + + +V++ + + G+D+ D +
Sbjct: 206 AAFNNLVGVKPTKGLLSTSGVVPACRSLDCVTVFAASVAEGTLIRRIAEGYDAADPYSRP 265
Query: 286 EAARYIPVGGYK 297
R +P G +
Sbjct: 266 SQKRRLPHVGLR 277
>pdb|1OBK|A Chain A, Crystal Structure Of The R158q Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1OBK|B Chain B, Crystal Structure Of The R158q Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
Length = 414
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 64/282 (22%), Positives = 103/282 (36%), Gaps = 48/282 (17%)
Query: 41 TIDEIQTAFDQNKLTSTQLVEFYITQIETLNPRLRSVIEVNPDARSQAEKADLARKRNQG 100
++ ++Q + +L+ + IE + + + + AR+QA
Sbjct: 3 SLADLQRRIETGELSPNAAIAQSHAAIEAREKEVHAFVRHDKSARAQAS----------- 51
Query: 101 RRFLGELHGIPVLLKDTFATKDKLNTSAGSYALVGSVVPRDATVVERLRDAGAVILGKAS 160
G L GI V +KD T + + T GS G DA VV L+ AGA I+GK +
Sbjct: 52 ----GPLRGIAVGIKDIIDTAN-MPTEMGSEIYRGWQPRSDAPVVMMLKRAGATIIGKTT 106
Query: 161 LTEWYSFRALGKIPNGWCARAGQAKNPYLXXXXXXXXXXXXXXXXXXNMVTVSLGSETHG 220
T + S + NP+ M+ ++LG++T G
Sbjct: 107 TTAFASRDPTATL------------NPHNTGHSPGGSSSGSAAAVGAGMIPLALGTQTGG 154
Query: 221 SILCPADRNSVVGLKPTVGLTSRAGVIPVLPQHDTIGAISRTVSDAVYLLDVIVGFDSRD 280
S++ PA +KP+ + GV DT+G D L + G
Sbjct: 155 SVIQPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAMTG----- 209
Query: 281 YEATSEAARYIPVGGYKQFLNENGLKGKRLGVVRNLFSNALN 322
SE + +P K R+GVVR F+ A+
Sbjct: 210 ---RSEFSGIVPA------------KAPRIGVVRQEFAGAVE 236
>pdb|1OBL|A Chain A, Crystal Structure Of The S133a Mutant Of Malonamidase E2
Complexed With Malonate From Bradyrhizobium Japonicum
pdb|1OBL|B Chain B, Crystal Structure Of The S133a Mutant Of Malonamidase E2
Complexed With Malonate From Bradyrhizobium Japonicum
Length = 414
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 64/282 (22%), Positives = 103/282 (36%), Gaps = 48/282 (17%)
Query: 41 TIDEIQTAFDQNKLTSTQLVEFYITQIETLNPRLRSVIEVNPDARSQAEKADLARKRNQG 100
++ ++Q + +L+ + IE + + + + AR+QA
Sbjct: 3 SLADLQRRIETGELSPNAAIAQSHAAIEAREKEVHAFVRHDKSARAQAS----------- 51
Query: 101 RRFLGELHGIPVLLKDTFATKDKLNTSAGSYALVGSVVPRDATVVERLRDAGAVILGKAS 160
G L GI V +KD T + + T GS G DA VV L+ AGA I+GK +
Sbjct: 52 ----GPLRGIAVGIKDIIDTAN-MPTEMGSEIYRGWQPRSDAPVVMMLKRAGATIIGKTT 106
Query: 161 LTEWYSFRALGKIPNGWCARAGQAKNPYLXXXXXXXXXXXXXXXXXXNMVTVSLGSETHG 220
T + S + NP+ M+ ++LG++T G
Sbjct: 107 TTAFASRDPTATL------------NPHNTGHSPGGSSAGSAAAVGAGMIPLALGTQTGG 154
Query: 221 SILCPADRNSVVGLKPTVGLTSRAGVIPVLPQHDTIGAISRTVSDAVYLLDVIVGFDSRD 280
S++ PA +KP+ + GV DT+G D L + G
Sbjct: 155 SVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAMTG----- 209
Query: 281 YEATSEAARYIPVGGYKQFLNENGLKGKRLGVVRNLFSNALN 322
SE + +P K R+GVVR F+ A+
Sbjct: 210 ---RSEFSGIVPA------------KAPRIGVVRQEFAGAVE 236
>pdb|1O9O|A Chain A, Crystal Structure Of The S131a Mutant Of Malonamidase E2
Complexed With Malonamate From Bradyrhizobium Japonicum
pdb|1O9O|B Chain B, Crystal Structure Of The S131a Mutant Of Malonamidase E2
Complexed With Malonamate From Bradyrhizobium Japonicum
pdb|1O9P|A Chain A, Crystal Structure Of The S131a Mutant Of Malonamidase E2
Complexed With Malonate From Bradyrhizobium Japonicum
pdb|1O9P|B Chain B, Crystal Structure Of The S131a Mutant Of Malonamidase E2
Complexed With Malonate From Bradyrhizobium Japonicum
Length = 414
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 64/282 (22%), Positives = 103/282 (36%), Gaps = 48/282 (17%)
Query: 41 TIDEIQTAFDQNKLTSTQLVEFYITQIETLNPRLRSVIEVNPDARSQAEKADLARKRNQG 100
++ ++Q + +L+ + IE + + + + AR+QA
Sbjct: 3 SLADLQRRIETGELSPNAAIAQSHAAIEAREKEVHAFVRHDKSARAQAS----------- 51
Query: 101 RRFLGELHGIPVLLKDTFATKDKLNTSAGSYALVGSVVPRDATVVERLRDAGAVILGKAS 160
G L GI V +KD T + + T GS G DA VV L+ AGA I+GK +
Sbjct: 52 ----GPLRGIAVGIKDIIDTAN-MPTEMGSEIYRGWQPRSDAPVVMMLKRAGATIIGKTT 106
Query: 161 LTEWYSFRALGKIPNGWCARAGQAKNPYLXXXXXXXXXXXXXXXXXXNMVTVSLGSETHG 220
T + S + NP+ M+ ++LG++T G
Sbjct: 107 TTAFASRDPTATL------------NPHNTGHSPGGASSGSAAAVGAGMIPLALGTQTGG 154
Query: 221 SILCPADRNSVVGLKPTVGLTSRAGVIPVLPQHDTIGAISRTVSDAVYLLDVIVGFDSRD 280
S++ PA +KP+ + GV DT+G D L + G
Sbjct: 155 SVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAMTG----- 209
Query: 281 YEATSEAARYIPVGGYKQFLNENGLKGKRLGVVRNLFSNALN 322
SE + +P K R+GVVR F+ A+
Sbjct: 210 ---RSEFSGIVPA------------KAPRIGVVRQEFAGAVE 236
>pdb|1OBJ|A Chain A, Crystal Structure Of The T150a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1OBJ|B Chain B, Crystal Structure Of The T150a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
Length = 414
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 64/282 (22%), Positives = 103/282 (36%), Gaps = 48/282 (17%)
Query: 41 TIDEIQTAFDQNKLTSTQLVEFYITQIETLNPRLRSVIEVNPDARSQAEKADLARKRNQG 100
++ ++Q + +L+ + IE + + + + AR+QA
Sbjct: 3 SLADLQRRIETGELSPNAAIAQSHAAIEAREKEVHAFVRHDKSARAQAS----------- 51
Query: 101 RRFLGELHGIPVLLKDTFATKDKLNTSAGSYALVGSVVPRDATVVERLRDAGAVILGKAS 160
G L GI V +KD T + + T GS G DA VV L+ AGA I+GK +
Sbjct: 52 ----GPLRGIAVGIKDIIDTAN-MPTEMGSEIYRGWQPRSDAPVVMMLKRAGATIIGKTT 106
Query: 161 LTEWYSFRALGKIPNGWCARAGQAKNPYLXXXXXXXXXXXXXXXXXXNMVTVSLGSETHG 220
T + S + NP+ M+ ++LG++T G
Sbjct: 107 TTAFASRDPTATL------------NPHNTGHSPGGSSSGSAAAVGAGMIPLALGAQTGG 154
Query: 221 SILCPADRNSVVGLKPTVGLTSRAGVIPVLPQHDTIGAISRTVSDAVYLLDVIVGFDSRD 280
S++ PA +KP+ + GV DT+G D L + G
Sbjct: 155 SVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAMTG----- 209
Query: 281 YEATSEAARYIPVGGYKQFLNENGLKGKRLGVVRNLFSNALN 322
SE + +P K R+GVVR F+ A+
Sbjct: 210 ---RSEFSGIVPA------------KAPRIGVVRQEFAGAVE 236
>pdb|1OBI|A Chain A, Crystal Structure Of The G130a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1OBI|B Chain B, Crystal Structure Of The G130a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
Length = 414
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 64/282 (22%), Positives = 103/282 (36%), Gaps = 48/282 (17%)
Query: 41 TIDEIQTAFDQNKLTSTQLVEFYITQIETLNPRLRSVIEVNPDARSQAEKADLARKRNQG 100
++ ++Q + +L+ + IE + + + + AR+QA
Sbjct: 3 SLADLQRRIETGELSPNAAIAQSHAAIEAREKEVHAFVRHDKSARAQAS----------- 51
Query: 101 RRFLGELHGIPVLLKDTFATKDKLNTSAGSYALVGSVVPRDATVVERLRDAGAVILGKAS 160
G L GI V +KD T + + T GS G DA VV L+ AGA I+GK +
Sbjct: 52 ----GPLRGIAVGIKDIIDTAN-MPTEMGSEIYRGWQPRSDAPVVMMLKRAGATIIGKTT 106
Query: 161 LTEWYSFRALGKIPNGWCARAGQAKNPYLXXXXXXXXXXXXXXXXXXNMVTVSLGSETHG 220
T + S + NP+ M+ ++LG++T G
Sbjct: 107 TTAFASRDPTATL------------NPHNTGHSPGASSSGSAAAVGAGMIPLALGTQTGG 154
Query: 221 SILCPADRNSVVGLKPTVGLTSRAGVIPVLPQHDTIGAISRTVSDAVYLLDVIVGFDSRD 280
S++ PA +KP+ + GV DT+G D L + G
Sbjct: 155 SVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAMTG----- 209
Query: 281 YEATSEAARYIPVGGYKQFLNENGLKGKRLGVVRNLFSNALN 322
SE + +P K R+GVVR F+ A+
Sbjct: 210 ---RSEFSGIVPA------------KAPRIGVVRQEFAGAVE 236
>pdb|1OCK|A Chain A, The Crystal Structure Of Malonamidase E2 From
Bradyrhizobium Japonicum
pdb|1OCK|B Chain B, The Crystal Structure Of Malonamidase E2 From
Bradyrhizobium Japonicum
pdb|1OCL|A Chain A, The Crystal Structure Of Malonamidase E2 Complexed With
Malonate From Bradyrhizobium Japonicum
pdb|1OCL|B Chain B, The Crystal Structure Of Malonamidase E2 Complexed With
Malonate From Bradyrhizobium Japonicum
pdb|1OCM|A Chain A, The Crystal Structure Of Malonamidase E2 Covalently
Complexed With Pyrophosphate From Bradyrhizobium
Japonicum
pdb|1OCM|B Chain B, The Crystal Structure Of Malonamidase E2 Covalently
Complexed With Pyrophosphate From Bradyrhizobium
Japonicum
Length = 412
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 64/282 (22%), Positives = 103/282 (36%), Gaps = 48/282 (17%)
Query: 41 TIDEIQTAFDQNKLTSTQLVEFYITQIETLNPRLRSVIEVNPDARSQAEKADLARKRNQG 100
++ ++Q + +L+ + IE + + + + AR+QA
Sbjct: 3 SLADLQRRIETGELSPNAAIAQSHAAIEAREKEVHAFVRHDKSARAQAS----------- 51
Query: 101 RRFLGELHGIPVLLKDTFATKDKLNTSAGSYALVGSVVPRDATVVERLRDAGAVILGKAS 160
G L GI V +KD T + + T GS G DA VV L+ AGA I+GK +
Sbjct: 52 ----GPLRGIAVGIKDIIDTAN-MPTEMGSEIYRGWQPRSDAPVVMMLKRAGATIIGKTT 106
Query: 161 LTEWYSFRALGKIPNGWCARAGQAKNPYLXXXXXXXXXXXXXXXXXXNMVTVSLGSETHG 220
T + S + NP+ M+ ++LG++T G
Sbjct: 107 TTAFASRDPTATL------------NPHNTGHSPGGSSSGSAAAVGAGMIPLALGTQTGG 154
Query: 221 SILCPADRNSVVGLKPTVGLTSRAGVIPVLPQHDTIGAISRTVSDAVYLLDVIVGFDSRD 280
S++ PA +KP+ + GV DT+G D L + G
Sbjct: 155 SVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAMTG----- 209
Query: 281 YEATSEAARYIPVGGYKQFLNENGLKGKRLGVVRNLFSNALN 322
SE + +P K R+GVVR F+ A+
Sbjct: 210 ---RSEFSGIVPA------------KAPRIGVVRQEFAGAVE 236
>pdb|1O9Q|A Chain A, Crystal Structure Of The S155c Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1O9Q|B Chain B, Crystal Structure Of The S155c Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1OCH|A Chain A, Crystal Structure Of The S155c Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1OCH|B Chain B, Crystal Structure Of The S155c Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
Length = 414
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 63/282 (22%), Positives = 102/282 (36%), Gaps = 48/282 (17%)
Query: 41 TIDEIQTAFDQNKLTSTQLVEFYITQIETLNPRLRSVIEVNPDARSQAEKADLARKRNQG 100
++ ++Q + +L+ + IE + + + + AR+QA
Sbjct: 3 SLADLQRRIETGELSPNAAIAQSHAAIEAREKEVHAFVRHDKSARAQAS----------- 51
Query: 101 RRFLGELHGIPVLLKDTFATKDKLNTSAGSYALVGSVVPRDATVVERLRDAGAVILGKAS 160
G L GI V +KD T + + T GS G DA VV L+ AGA I+GK +
Sbjct: 52 ----GPLRGIAVGIKDIIDTAN-MPTEMGSEIYRGWQPRSDAPVVMMLKRAGATIIGKTT 106
Query: 161 LTEWYSFRALGKIPNGWCARAGQAKNPYLXXXXXXXXXXXXXXXXXXNMVTVSLGSETHG 220
T + S + NP+ M+ ++LG++T G
Sbjct: 107 TTAFASRDPTATL------------NPHNTGHSPGGSSSGSAAAVGAGMIPLALGTQTGG 154
Query: 221 SILCPADRNSVVGLKPTVGLTSRAGVIPVLPQHDTIGAISRTVSDAVYLLDVIVGFDSRD 280
++ PA +KP+ + GV DT+G D L + G
Sbjct: 155 XVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAMTG----- 209
Query: 281 YEATSEAARYIPVGGYKQFLNENGLKGKRLGVVRNLFSNALN 322
SE + +P K R+GVVR F+ A+
Sbjct: 210 ---RSEFSGIVPA------------KAPRIGVVRQEFAGAVE 236
>pdb|1O9N|A Chain A, Crystal Structure Of The K62a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1O9N|B Chain B, Crystal Structure Of The K62a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
Length = 414
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 63/282 (22%), Positives = 102/282 (36%), Gaps = 48/282 (17%)
Query: 41 TIDEIQTAFDQNKLTSTQLVEFYITQIETLNPRLRSVIEVNPDARSQAEKADLARKRNQG 100
++ ++Q + +L+ + IE + + + + AR+QA
Sbjct: 3 SLADLQRRIETGELSPNAAIAQSHAAIEAREKEVHAFVRHDKSARAQAS----------- 51
Query: 101 RRFLGELHGIPVLLKDTFATKDKLNTSAGSYALVGSVVPRDATVVERLRDAGAVILGKAS 160
G L GI V + D T + + T GS G DA VV L+ AGA I+GK +
Sbjct: 52 ----GPLRGIAVGIADIIDTAN-MPTEMGSEIYRGWQPRSDAPVVMMLKRAGATIIGKTT 106
Query: 161 LTEWYSFRALGKIPNGWCARAGQAKNPYLXXXXXXXXXXXXXXXXXXNMVTVSLGSETHG 220
T + S + NP+ M+ ++LG++T G
Sbjct: 107 TTAFASRDPTATL------------NPHNTGHSPGGSSSGSAAAVGAGMIPLALGTQTGG 154
Query: 221 SILCPADRNSVVGLKPTVGLTSRAGVIPVLPQHDTIGAISRTVSDAVYLLDVIVGFDSRD 280
S++ PA +KP+ + GV DT+G D L + G
Sbjct: 155 SVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAMTG----- 209
Query: 281 YEATSEAARYIPVGGYKQFLNENGLKGKRLGVVRNLFSNALN 322
SE + +P K R+GVVR F+ A+
Sbjct: 210 ---RSEFSGIVPA------------KAPRIGVVRQEFAGAVE 236
>pdb|1ZVO|C Chain C, Semi-Extended Solution Structure Of Human Myeloma
Immunoglobulin D Determined By Constrained X-Ray
Scattering
pdb|1ZVO|D Chain D, Semi-Extended Solution Structure Of Human Myeloma
Immunoglobulin D Determined By Constrained X-Ray
Scattering
Length = 512
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 50/120 (41%), Gaps = 16/120 (13%)
Query: 265 DAVYLLDVIVGFDSRDYEATSEAARYIPVGGYKQFL---NENGLKGK--RLGVVRNLFSN 319
D +VG D +D T E A +P GG ++ L + NG + + RL + R+L+
Sbjct: 313 DKATFTCFVVGSDLKDAHLTWEVAGKVPTGGVEEGLLERHSNGSQSQHSRLTLPRSLW-- 370
Query: 320 ALNGSTVITAFENH-------LNTLRQSGATIVDDLEMANVDVISNPGKSGELTAMLAGF 372
N T +T NH L LR+ A L + + P + L ++GF
Sbjct: 371 --NAGTSVTCTLNHPSLPPQRLMALREPAAQAPVKLSLNLLASSDPPEAASWLLCEVSGF 428
>pdb|2WAP|A Chain A, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With The Drug-Like Urea
Inhibitor Pf-3845
pdb|2WAP|B Chain B, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With The Drug-Like Urea
Inhibitor Pf-3845
Length = 543
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 60/143 (41%), Gaps = 9/143 (6%)
Query: 105 GELHGIPVLLKDTFATKDKLNTSAGSYALVGSVVPRDATVVERLRDAGAVILGKASLTE- 163
G L+G+PV LK+ F+ K +++ G G D VV+ L+ GAV ++ +
Sbjct: 102 GLLYGVPVSLKECFSYKGH-DSTLGLSLNEGMPSESDCVVVQVLKLQGAVPFVHTNVPQS 160
Query: 164 WYSFRALGKIPNGWCARAGQAKNPYLXXXXXXXXXXXXXXXXXXNMVTVSLGSETHGSIL 223
+S+ + GQ NP+ + LG++ GSI
Sbjct: 161 MFSYDCSNPL-------FGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGGSIR 213
Query: 224 CPADRNSVVGLKPTVGLTSRAGV 246
P+ + GLKPT S++G+
Sbjct: 214 FPSAFCGICGLKPTGNRLSKSGL 236
>pdb|2VYA|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase Conjugated
With The Drug-Like Inhibitor Pf-750
pdb|2VYA|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase Conjugated
With The Drug-Like Inhibitor Pf-750
Length = 587
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 60/143 (41%), Gaps = 9/143 (6%)
Query: 105 GELHGIPVLLKDTFATKDKLNTSAGSYALVGSVVPRDATVVERLRDAGAVILGKASLTE- 163
G L+G+PV LK+ F+ K +++ G G D VV+ L+ GAV ++ +
Sbjct: 140 GLLYGVPVSLKECFSYKGH-DSTLGLSLNEGMPSESDCVVVQVLKLQGAVPFVHTNVPQS 198
Query: 164 WYSFRALGKIPNGWCARAGQAKNPYLXXXXXXXXXXXXXXXXXXNMVTVSLGSETHGSIL 223
+S+ + GQ NP+ + LG++ GSI
Sbjct: 199 MFSYDCSNPL-------FGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGGSIR 251
Query: 224 CPADRNSVVGLKPTVGLTSRAGV 246
P+ + GLKPT S++G+
Sbjct: 252 FPSAFCGICGLKPTGNRLSKSGL 274
>pdb|2WJ1|A Chain A, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With
7-Phenyl-1-(4-(Pyridin-2- Yl)oxazol-2-Yl)heptan-1-One,
An Alpha-Ketooxazole
pdb|2WJ1|B Chain B, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With
7-Phenyl-1-(4-(Pyridin-2- Yl)oxazol-2-Yl)heptan-1-One,
An Alpha-Ketooxazole
pdb|2WJ2|A Chain A, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With
7-Phenyl-1-(5-(Pyridin-2- Yl)oxazol-2-Yl)heptan-1-One,
An Alpha-Ketooxazole
pdb|2WJ2|B Chain B, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With
7-Phenyl-1-(5-(Pyridin-2- Yl)oxazol-2-Yl)heptan-1-One,
An Alpha-Ketooxazole
pdb|3K7F|A Chain A, Crystal Structure Analysis Of A
PhenhexylOXAZOLECARBOXYPYRIDINE ALPHA-Ketoheterocycle
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase'
pdb|3K7F|B Chain B, Crystal Structure Analysis Of A
PhenhexylOXAZOLECARBOXYPYRIDINE ALPHA-Ketoheterocycle
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase'
pdb|3K83|A Chain A, Crystal Structure Analysis Of A
BiphenylOXAZOLECARBOXYPYRIDINE ALPHA-Ketoheterocycle
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase
pdb|3K83|B Chain B, Crystal Structure Analysis Of A
BiphenylOXAZOLECARBOXYPYRIDINE ALPHA-Ketoheterocycle
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase
pdb|3K84|A Chain A, Crystal Structure Analysis Of A OleylOXADIAZOLEPYRIDINE
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase
pdb|3K84|B Chain B, Crystal Structure Analysis Of A OleylOXADIAZOLEPYRIDINE
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase
pdb|3LJ6|A Chain A, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With The Drug-Like Urea
Inhibitor Pf-3845 At 2.42a Resolution
pdb|3LJ6|B Chain B, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With The Drug-Like Urea
Inhibitor Pf-3845 At 2.42a Resolution
pdb|3LJ7|A Chain A, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With Carbamate Inhibitor
Urb597
pdb|3LJ7|B Chain B, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With Carbamate Inhibitor
Urb597
pdb|3OJ8|A Chain A, Alpha-Ketoheterocycle Inhibitors Of Fatty Acid Amide
Hydrolase Containing Additional Conformational
Contraints In The Acyl Side Chain
pdb|3OJ8|B Chain B, Alpha-Ketoheterocycle Inhibitors Of Fatty Acid Amide
Hydrolase Containing Additional Conformational
Contraints In The Acyl Side Chain
pdb|3PPM|A Chain A, Crystal Structure Of A Noncovalently Bound
Alpha-Ketoheterocycle Inhibitor
(PhenhexylOXADIAZOLEPYRIDINE) TO A HUMANIZED VARIANT OF
Fatty Acid Amide Hydrolase
pdb|3PPM|B Chain B, Crystal Structure Of A Noncovalently Bound
Alpha-Ketoheterocycle Inhibitor
(PhenhexylOXADIAZOLEPYRIDINE) TO A HUMANIZED VARIANT OF
Fatty Acid Amide Hydrolase
pdb|3PR0|A Chain A, Crystal Structure Of A Covalently Bound
Alpha-Ketoheterocycle Inhibitor
(PhenhexylOXADIAZOLEPYRIDINE) TO A HUMANIZED VARIANT OF
Fatty Acid Amide Hydrolase
pdb|3PR0|B Chain B, Crystal Structure Of A Covalently Bound
Alpha-Ketoheterocycle Inhibitor
(PhenhexylOXADIAZOLEPYRIDINE) TO A HUMANIZED VARIANT OF
Fatty Acid Amide Hydrolase
Length = 573
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 60/143 (41%), Gaps = 9/143 (6%)
Query: 105 GELHGIPVLLKDTFATKDKLNTSAGSYALVGSVVPRDATVVERLRDAGAVILGKASLTE- 163
G L+G+PV LK+ F+ K +++ G G D VV+ L+ GAV ++ +
Sbjct: 126 GLLYGVPVSLKECFSYKGH-DSTLGLSLNEGMPSESDCVVVQVLKLQGAVPFVHTNVPQS 184
Query: 164 WYSFRALGKIPNGWCARAGQAKNPYLXXXXXXXXXXXXXXXXXXNMVTVSLGSETHGSIL 223
+S+ + GQ NP+ + LG++ GSI
Sbjct: 185 MFSYDCSNPL-------FGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGGSIR 237
Query: 224 CPADRNSVVGLKPTVGLTSRAGV 246
P+ + GLKPT S++G+
Sbjct: 238 FPSAFCGICGLKPTGNRLSKSGL 260
>pdb|1MT5|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|C Chain C, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|D Chain D, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|E Chain E, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|F Chain F, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|G Chain G, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|H Chain H, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|I Chain I, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|J Chain J, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|K Chain K, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|L Chain L, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|M Chain M, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|N Chain N, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|O Chain O, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|P Chain P, Crystal Structure Of Fatty Acid Amide Hydrolase
Length = 537
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 59/143 (41%), Gaps = 9/143 (6%)
Query: 105 GELHGIPVLLKDTFATKDKLNTSAGSYALVGSVVPRDATVVERLRDAGAVILGKASLTE- 163
G L+G+PV LK+ F+ K +++ G G D VV+ L+ GAV ++ +
Sbjct: 96 GLLYGVPVSLKECFSYKGH-DSTLGLSLNEGMPSESDCVVVQVLKLQGAVPFVHTNVPQS 154
Query: 164 WYSFRALGKIPNGWCARAGQAKNPYLXXXXXXXXXXXXXXXXXXNMVTVSLGSETHGSIL 223
SF + GQ NP+ + LG++ GSI
Sbjct: 155 MLSFDCSNPL-------FGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGGSIR 207
Query: 224 CPADRNSVVGLKPTVGLTSRAGV 246
P+ + GLKPT S++G+
Sbjct: 208 FPSAFCGICGLKPTGNRLSKSGL 230
>pdb|4HBP|A Chain A, Crystal Structure Of Faah In Complex With Inhibitor
pdb|4HBP|B Chain B, Crystal Structure Of Faah In Complex With Inhibitor
Length = 550
Score = 32.7 bits (73), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 59/143 (41%), Gaps = 9/143 (6%)
Query: 105 GELHGIPVLLKDTFATKDKLNTSAGSYALVGSVVPRDATVVERLRDAGAVILGKASLTE- 163
G L+G+PV LK+ F+ K +++ G G D VV+ L+ GAV ++ +
Sbjct: 103 GLLYGVPVSLKECFSYKGH-DSTLGLSLNEGMPSESDCVVVQVLKLQGAVPFVHTNVPQS 161
Query: 164 WYSFRALGKIPNGWCARAGQAKNPYLXXXXXXXXXXXXXXXXXXNMVTVSLGSETHGSIL 223
SF + GQ NP+ + LG++ GSI
Sbjct: 162 MLSFDCSNPL-------FGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGGSIR 214
Query: 224 CPADRNSVVGLKPTVGLTSRAGV 246
P+ + GLKPT S++G+
Sbjct: 215 FPSAFCGICGLKPTGNRLSKSGL 237
>pdb|4DO3|A Chain A, Structure Of Faah With A Non-steroidal Anti-inflammatory
Drug
pdb|4DO3|B Chain B, Structure Of Faah With A Non-steroidal Anti-inflammatory
Drug
Length = 571
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 59/143 (41%), Gaps = 9/143 (6%)
Query: 105 GELHGIPVLLKDTFATKDKLNTSAGSYALVGSVVPRDATVVERLRDAGAVILGKASLTE- 163
G L+G+PV LK+ F+ K +++ G G D VV+ L+ GAV ++ +
Sbjct: 122 GLLYGVPVSLKECFSYKGH-DSTLGLSLNEGMPSESDCVVVQVLKLQGAVPFVHTNVPQS 180
Query: 164 WYSFRALGKIPNGWCARAGQAKNPYLXXXXXXXXXXXXXXXXXXNMVTVSLGSETHGSIL 223
SF + GQ NP+ + LG++ GSI
Sbjct: 181 MLSFDCSNPL-------FGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGGSIR 233
Query: 224 CPADRNSVVGLKPTVGLTSRAGV 246
P+ + GLKPT S++G+
Sbjct: 234 FPSAFCGICGLKPTGNRLSKSGL 256
>pdb|3QK5|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Inhibitor
pdb|3QK5|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Inhibitor
pdb|3QJ8|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|3QJ8|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|3QJ9|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Inhibitor
pdb|3QJ9|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Inhibitor
pdb|3QKV|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Compound
pdb|3QKV|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Compound
Length = 587
Score = 32.3 bits (72), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 59/143 (41%), Gaps = 9/143 (6%)
Query: 105 GELHGIPVLLKDTFATKDKLNTSAGSYALVGSVVPRDATVVERLRDAGAVILGKASLTE- 163
G L+G+PV LK+ F+ K +++ G G D VV+ L+ GAV ++ +
Sbjct: 140 GLLYGVPVSLKECFSYKGH-DSTLGLSLNEGMPSESDCVVVQVLKLQGAVPFVHTNVPQS 198
Query: 164 WYSFRALGKIPNGWCARAGQAKNPYLXXXXXXXXXXXXXXXXXXNMVTVSLGSETHGSIL 223
SF + GQ NP+ + LG++ GSI
Sbjct: 199 MLSFDCSNPL-------FGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGGSIR 251
Query: 224 CPADRNSVVGLKPTVGLTSRAGV 246
P+ + GLKPT S++G+
Sbjct: 252 FPSAFCGICGLKPTGNRLSKSGL 274
>pdb|1OQS|B Chain B, Crystal Structure Of Rv4RV7 COMPLEX
pdb|1OQS|D Chain D, Crystal Structure Of Rv4RV7 COMPLEX
pdb|1OQS|F Chain F, Crystal Structure Of Rv4RV7 COMPLEX
pdb|1OQS|H Chain H, Crystal Structure Of Rv4RV7 COMPLEX
Length = 122
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 18/25 (72%)
Query: 490 CFGGLKGTEPKLIEIAYAFEQATMI 514
C+GG+KG PKL +Y+F++ ++
Sbjct: 50 CYGGVKGCNPKLAIYSYSFQRGNIV 74
>pdb|3GR5|A Chain A, Periplasmic Domain Of The Outer Membrane Secretin Escc
From Enteropathogenic E.Coli (Epec)
Length = 156
Score = 29.6 bits (65), Expect = 4.6, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 13/70 (18%)
Query: 373 KIALNEYLQELVSSPVRSLADVIAFNQNNADMEKTKEYGQGTFISAEKTSGF-GE-KERK 430
++ NEY SSPVR++ + A N Y FIS+ F GE K K
Sbjct: 10 RLGKNEYFIITKSSPVRAILNDFAAN-----------YSIPVFISSSVNDDFSGEIKNEK 58
Query: 431 AVELMEKLSQ 440
V+++EKLS+
Sbjct: 59 PVKVLEKLSK 68
>pdb|3K4H|A Chain A, Crystal Structure Of Putative Transcriptional Regulator
Laci From Bacillus Cereus Subsp. Cytotoxis Nvh 391-98
pdb|3K4H|B Chain B, Crystal Structure Of Putative Transcriptional Regulator
Laci From Bacillus Cereus Subsp. Cytotoxis Nvh 391-98
Length = 292
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 7/83 (8%)
Query: 271 DVIVGFDSRDYEATSEAARYIPVGGYKQFLNENGLKGKRLGVVRNLF---SNALNGSTVI 327
D I D+ +Y A E A Y+ G+KQ G G L V R+ S+AL + ++
Sbjct: 106 DEITYVDNDNYTAAREVAEYLISLGHKQIAFIGG--GSDLLVTRDRLAGXSDALKLADIV 163
Query: 328 TAFEN--HLNTLRQSGATIVDDL 348
E H + R+SG V++L
Sbjct: 164 LPKEYILHFDFSRESGQQAVEEL 186
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,282,976
Number of Sequences: 62578
Number of extensions: 586201
Number of successful extensions: 1578
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1502
Number of HSP's gapped (non-prelim): 41
length of query: 528
length of database: 14,973,337
effective HSP length: 103
effective length of query: 425
effective length of database: 8,527,803
effective search space: 3624316275
effective search space used: 3624316275
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)