Query 009709
Match_columns 528
No_of_seqs 274 out of 1308
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 11:17:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009709.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009709hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1m22_A Peptide amidase, PAM; e 100.0 1E-104 4E-109 848.2 45.7 475 31-525 2-496 (503)
2 3ip4_A Glutamyl-tRNA(Gln) amid 100.0 5E-103 2E-107 832.5 38.9 448 36-516 2-480 (485)
3 3h0l_A Glutamyl-tRNA(Gln) amid 100.0 4E-101 1E-105 813.9 35.4 445 37-520 2-477 (478)
4 2dc0_A Probable amidase; struc 100.0 2.8E-99 9E-104 792.2 37.8 404 40-512 1-433 (434)
5 3kfu_E Glutamyl-tRNA(Gln) amid 100.0 7E-100 2E-104 802.2 32.4 434 40-517 1-464 (471)
6 3a2q_A 6-aminohexanoate-cyclic 100.0 3.9E-98 1E-102 797.0 37.1 429 35-515 4-477 (493)
7 2gi3_A Glutamyl-tRNA(Gln) amid 100.0 1.2E-97 4E-102 789.8 28.7 437 34-519 4-468 (476)
8 3ppm_A Fatty-acid amide hydrol 100.0 2.2E-95 8E-100 779.8 31.8 450 30-519 61-573 (573)
9 1o9p_A Malonamidase E2; malona 100.0 5E-94 1.7E-98 747.3 35.3 392 40-513 2-411 (414)
10 3a1k_A Amidase; AS family enzy 100.0 3.8E-94 1.3E-98 767.6 17.6 452 39-518 12-508 (521)
11 3shg_B VBHA; ampylation, adeny 50.7 19 0.00065 25.4 3.9 28 42-69 32-59 (61)
12 1nrp_R Receptor based peptide 44.7 6.8 0.00023 21.7 0.7 10 519-528 14-23 (26)
13 1nro_R Receptor based peptide 40.1 8 0.00027 21.6 0.5 9 519-527 14-22 (27)
14 1zrj_A E1B-55KDA-associated pr 37.0 21 0.00073 24.3 2.4 40 31-70 4-43 (50)
15 2do1_A Nuclear protein HCC-1; 25.5 29 0.00099 24.2 1.5 39 32-70 5-43 (55)
No 1
>1m22_A Peptide amidase, PAM; eleven-stranded beta sheet, covered double layers of alpha helices on TOP and bottom, hydrolase; HET: EPE; 1.40A {Stenotrophomonas maltophilia} SCOP: c.117.1.1 PDB: 1m21_A*
Probab=100.00 E-value=1.3e-104 Score=848.16 Aligned_cols=475 Identities=42% Similarity=0.678 Sum_probs=400.1
Q ss_pred CCCcccccccCHHHHHHHHHCCCCCHHHHHHHHHHHHHHhC---CCccEEEeeCHhHHHHHHHHHHHhHHhcCCCCCCCc
Q 009709 31 GQDQFTIIEATIDEIQTAFDQNKLTSTQLVEFYITQIETLN---PRLRSVIEVNPDARSQAEKADLARKRNQGRRFLGEL 107 (528)
Q Consensus 31 ~~~~~~~~~~~~~~l~~~~~~g~~t~~ev~~~~l~ri~~~~---~~~na~~~~~~~a~~~A~~~d~~~~~~~~g~~~gpL 107 (528)
+...|++.++|+.+|+++|++|++|++||+++||+||+++| +.+|||+++++||+++|+++|+++ ++|+.+|||
T Consensus 2 ~~~~~~~~~~~~~~l~~~l~~g~~s~~el~~a~l~ri~~~~~~~~~lna~~~~~~~Al~~A~~~d~~~---~~g~~~gpL 78 (503)
T 1m22_A 2 RNVPFPYAETDVADLQARMTAGELDSTTLTQAYLQRIAALDRTGPRLRAVIELNPDALKEAAERDRER---RDGRLRGPL 78 (503)
T ss_dssp ---CCTTTTCCHHHHHHHHHTTSCCHHHHHHHHHHHHHHHTTSTTCCCCEEEECTTHHHHHHHHHHHH---HTTCCCSTT
T ss_pred CCCCCCcccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcCCCCceEEEEECCHHHHHHHHHHHHHH---HcCCCCCCc
Confidence 34567899999999999999999999999999999999999 999999999988999999999988 788889999
Q ss_pred ccceeeeecCcCccCCCcCCccchhhcCCCCCCChHHHHHHHHcCCeEEEecChhhhhhcccCCCCCCCCCCCCCCCCCC
Q 009709 108 HGIPVLLKDTFATKDKLNTSAGSYALVGSVVPRDATVVERLRDAGAVILGKASLTEWYSFRALGKIPNGWCARAGQAKNP 187 (528)
Q Consensus 108 ~GiPi~vKD~~~~~g~~~tt~Gs~~~~~~~~~~da~~V~~L~~aGaii~GkTn~~E~a~~~~~~~~~~~~~~~~G~~~NP 187 (528)
|||||+|||||+++| ++||+||+.++++++ +||++|+|||+|||||+||||||||+++.++ .+.+|+|++||+|+||
T Consensus 79 ~GvPi~vKD~~~v~G-~~Tt~Gs~~~~~~~~-~dA~vV~rLr~AGAii~GKTn~~Efa~~~~~-~~~~~~n~~~G~t~NP 155 (503)
T 1m22_A 79 HGIPLLLKDNINAAP-MATSAGSLALQGFRP-DDAYLVRRLRDAGAVVLGKTNLSEWANFRGN-DSISGWSARGGQTRNP 155 (503)
T ss_dssp TTCEEEEETTBCCTT-SCCCTTCGGGTTCCC-CCCHHHHHHHHTTCEEEEEECCSHHHHCSCT-TCCTTEETTTEECCCT
T ss_pred CCceeEeecccccCC-CCcCCCCHhhcCCCC-CCcHHHHHHHHCCCEEEeccCHHHHhcccCC-CCCCCCCCCCCCCCCC
Confidence 999999999999996 999999999999999 9999999999999999999999999974432 2467899999999999
Q ss_pred CCCCCCCCCCChhHHHHHHhccceeecccccCCccccccccCCcceecCCCCceeCCCCCCCCCCCcccccccCCHHHHH
Q 009709 188 YLPSGDPCGSSSGSAISVAANMVTVSLGSETHGSILCPADRNSVVGLKPTVGLTSRAGVIPVLPQHDTIGAISRTVSDAV 267 (528)
Q Consensus 188 ~~~~~~~GGSSgGsaaaVAag~~~~alGtDtgGSiRiPAa~~Gv~GlKPT~G~vs~~G~~p~~~~~d~~GpmaRsv~D~a 267 (528)
||++|+|||||||||||||+|++++|+|||||||||+||+||||||||||+||||+.|++|+++++|++|||||||+|++
T Consensus 156 ~~~~~~pGGSSgGsAaAVAag~~~~alGtDtgGSIRiPAa~cGvvGlKPT~Grvs~~G~~p~~~sld~~Gp~arsv~D~a 235 (503)
T 1m22_A 156 YRISHSPCGSSSGSAVAVAANLASVAIGTETDGSIVCPAAINGVVGLKPTVGLVSRDGIIPISFSQDTAGPMARSVADAA 235 (503)
T ss_dssp TSTTBCCCSSSHHHHHHHHTTSSSEEEEEESSSTTHHHHHHTTSEEEECCTTSSCCTTBCCSCTTTCEEEEEESSHHHHH
T ss_pred CCCCCCCCccHHHHHHHHHcCCCceeeecCCCchhhhhHHHhCceEEECCCCCcCCCCcCCccCCCCeeCcccCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCCchhhhhhhhcCCCCcchhhcccCCCCCceEEEecccccCCCCCHHHHHHHHHHHHHHHHCCCEEeec
Q 009709 268 YLLDVIVGFDSRDYEATSEAARYIPVGGYKQFLNENGLKGKRLGVVRNLFSNALNGSTVITAFENHLNTLRQSGATIVDD 347 (528)
Q Consensus 268 ~~l~~l~g~d~~d~~~~~~~~~~~p~~~~~~~~~~~~~~~lRIGv~~~~~~~~~~~~~v~~a~~~a~~~L~~~G~~vve~ 347 (528)
+++++|+|+|+.|+.+...|. .+..+|...+....++++||||+.+++ . ++++++++++++++.|+++||+|++
T Consensus 236 ~~l~vl~g~d~~d~~~~~~~~--~~~~~~~~~~~~~~~~~lrIgv~~~~~-~--~~~~v~~a~~~a~~~L~~~G~~v~~- 309 (503)
T 1m22_A 236 AVLTAIAGRDDADPATATMPG--RAVYDYTARLDPQGLRGKRIGLLQTPL-L--KYRGMPPLIEQAATELRRAGAVVVP- 309 (503)
T ss_dssp HHHHHHCCCCTTCGGGGGCTT--CCCCCGGGGCCTTTTTTCEEEEECSGG-G--GSTTHHHHHHHHHHHHHHTTCEEEE-
T ss_pred HHHHHHcCCCCCCcccccccc--ccccchhhhccccCCCCCEEEEECccc-c--CCHHHHHHHHHHHHHHHHcCCEEEE-
Confidence 999999999999976644331 011245544432356899999998764 2 6899999999999999999999997
Q ss_pred cCCCchhhhcCCCCchhHHHHHHHHHHHHHHHHHhhccCCccchHHHHHHhhhchhhhhhhhcChhHHHhhhhcCCC-cH
Q 009709 348 LEMANVDVISNPGKSGELTAMLAGFKIALNEYLQELVSSPVRSLADVIAFNQNNADMEKTKEYGQGTFISAEKTSGF-GE 426 (528)
Q Consensus 348 ~~~p~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 426 (528)
+++|.++++. ..+..++..|+..++..|+.... .+.+.+.+++.+++.++. +....+++.++.+....... ..
T Consensus 310 ~~~p~~~~~~----~~~~~~~~~e~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 383 (503)
T 1m22_A 310 VELPNQGAWA----EAERTLLLYEFKAGLERYFNTHR-APLRSLADLIAFNQAHSK-QELGLFGQELLVEADATAGLADP 383 (503)
T ss_dssp ECCTTTTTTH----HHHHHHHHHHHHHHHHHHHHHTT-CSCCSHHHHHHHHHHTHH-HHSSSSCCHHHHHHHTCCCTTCH
T ss_pred eCCCcHHHHH----HHHHHHHHHHHHHHHHHHHHhcC-cccccHHHHHHHhhhcch-hcccccCHHHHHHHHhcCCCCHH
Confidence 6877654322 12355667788888888887653 455677777766544331 22334566555444433333 45
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHhcCCCcEEEecCCC---------------chhhhhccCCCeEeeccccCCCCCceEEE
Q 009709 427 KERKAVELMEKLSQDG-IEKLMTENELDALVTPGTR---------------VIPVLALGGYPGITVPAGYEGNQMPFGIC 490 (528)
Q Consensus 427 ~~~~a~~~~~~~~~~~-~~~~~~~~~~DvLl~Pt~~---------------~t~~~n~~G~PaisvP~G~~~~GlPvGlQ 490 (528)
+|.++.++++++.++. +.++|+++++|+||+||++ +|.++|++|+|+++||+|+. +|||+|||
T Consensus 384 ~~~~a~~~~~~~~~~~~~~~~~~~~~~D~ll~Pt~~~a~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~-~GlPvGvq 462 (503)
T 1m22_A 384 AYIRARSDARRLAGPEGIDAALAAHQLDALVAPTTGVAWPIRSEGDDFPGESYSAAAVAGYPSLTVPMGQI-DGLPVGLL 462 (503)
T ss_dssp HHHHHHHHHHHHHTTTTHHHHHHHTTCSEEEEECCCCCCBTTC---CCTTCCHHHHHHHTCCEEEEEEEEE-TTEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEeCCCccCcccccccCcccccccccchhhCCCeEEeccccC-CCCCeEEE
Confidence 5666666666554442 9999987779999999973 57889999999999999987 89999999
Q ss_pred EEccCCChHHHHHHHHHHHHHcCCCCCCCCCCCCc
Q 009709 491 FGGLKGTEPKLIEIAYAFEQATMIRRPPFVTPFWI 525 (528)
Q Consensus 491 lvg~~~~D~~LL~~A~~lE~~~~~~~~p~~~p~~~ 525 (528)
|+|++|+|++||++|++||++++|+++|.+.| |+
T Consensus 463 lvg~~~~d~~lL~~A~~~E~~~~~~~~p~~~~-~~ 496 (503)
T 1m22_A 463 FMGTAWSEPKLIEMAYAYEQRTRARRPPHFDT-DA 496 (503)
T ss_dssp EECSTTCHHHHHHHHHHHHHHHCCCCCCCCCC---
T ss_pred EECCCCChHHHHHHHHHHHHhhCCCCCCCCCC-CC
Confidence 99999999999999999999999999988887 54
No 2
>3ip4_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} SCOP: c.117.1.1 PDB: 2df4_A 2dqn_A* 2g5h_A 2g5i_A* 2f2a_A
Probab=100.00 E-value=4.7e-103 Score=832.46 Aligned_cols=448 Identities=27% Similarity=0.409 Sum_probs=370.9
Q ss_pred cccccCHHHHHHHHHCCCCCHHHHHHHHHHHHHHhCCCccEEEeeCHh-HHHHHHHHHHHhHHhcCCCCCCCcccceeee
Q 009709 36 TIIEATIDEIQTAFDQNKLTSTQLVEFYITQIETLNPRLRSVIEVNPD-ARSQAEKADLARKRNQGRRFLGELHGIPVLL 114 (528)
Q Consensus 36 ~~~~~~~~~l~~~~~~g~~t~~ev~~~~l~ri~~~~~~~na~~~~~~~-a~~~A~~~d~~~~~~~~g~~~gpL~GiPi~v 114 (528)
++.++|+.+|+++|++|++|++||+++||+||+++|+.+|||+++++| |+++|+++|+++. ++|+. ||||||||+|
T Consensus 2 ~l~~~~~~~l~~~i~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~~~~Al~~A~~~d~~~~--~~g~~-gpL~GvPi~v 78 (485)
T 3ip4_A 2 SIRYESVENLLTLIKDKKIKPSDVVKDIYDAIEETDPTIKSFLALDKENAIKKAQELDELQA--KDQMD-GKLFGIPMGI 78 (485)
T ss_dssp CGGGCCHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHHHHHH--TTCCC-STTTTCEEEE
T ss_pred CcccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCceEEEEECHHHHHHHHHHHHHHHH--hcCCC-CCcCCCEEEE
Confidence 578899999999999999999999999999999999999999999998 9999999998763 46777 9999999999
Q ss_pred ecCcCccCCCcCCccchhhcCCCCCCChHHHHHHHHcCCeEEEecChhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 009709 115 KDTFATKDKLNTSAGSYALVGSVVPRDATVVERLRDAGAVILGKASLTEWYSFRALGKIPNGWCARAGQAKNPYLPSGDP 194 (528)
Q Consensus 115 KD~~~~~g~~~tt~Gs~~~~~~~~~~da~~V~~L~~aGaii~GkTn~~E~a~~~~~~~~~~~~~~~~G~~~NP~~~~~~~ 194 (528)
||||+++| ++||+||+.++++++.+||++|+|||+|||||+||||||||++ +..++|++||+|+||||++|+|
T Consensus 79 KD~~~v~G-~~tt~Gs~~~~~~~~~~dA~vV~rLr~AGAii~GKTn~~Efa~------~~~t~n~~~G~t~NP~~~~~~p 151 (485)
T 3ip4_A 79 KDNIITNG-LETTCASKMLEGFVPIYESTVMEKLHKENAVLIGKLNMDEFAM------GGSTETSYFKKTVNPFDHKAVP 151 (485)
T ss_dssp ETTBCBTT-BCCCTTSGGGTTCCCSSCCHHHHHHHHTTCEEEEEECCSGGGC------CSSSTTCSSCCCCBTTBTTBCC
T ss_pred EcCcccCC-CccCCCChhhcCCCCCCCcHHHHHHHHCCCEEEEecCCccccc------CCCCCCCCCCCcCCccccCcCC
Confidence 99999996 9999999999999999999999999999999999999999998 6678999999999999999999
Q ss_pred CCCChhHHHHHHhccceeecccccCCccccccccCCcceecCCCCceeCCCCCCCCCCCcccccccCCHHHHHHHHHHHh
Q 009709 195 CGSSSGSAISVAANMVTVSLGSETHGSILCPADRNSVVGLKPTVGLTSRAGVIPVLPQHDTIGAISRTVSDAVYLLDVIV 274 (528)
Q Consensus 195 GGSSgGsaaaVAag~~~~alGtDtgGSiRiPAa~~Gv~GlKPT~G~vs~~G~~p~~~~~d~~GpmaRsv~D~a~~l~~l~ 274 (528)
||||||||||||+|++|+|+|||||||||+||+||||||||||+||||+.|++|+++++|++|||||||+|+++++++|+
T Consensus 152 GGSSgGsAaaVAag~~~~alGtDtgGSIRiPAa~cGv~GlKPT~Grvs~~G~~p~~~sld~~Gp~aRsv~D~a~~l~vl~ 231 (485)
T 3ip4_A 152 GGSSGGSAAAVAAGLVPLSLGSDTGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVKDNAIVLEAIS 231 (485)
T ss_dssp CSSSHHHHHHHHTTSCSEEEEECSSSTTHHHHHHTTCEEEECCTTSBCCTTBCCSCTTTCCEEEEESSHHHHHHHHHHHB
T ss_pred CCCccHHHHHhhcCCCceeeeccCCcchhhhHHHhCCeeecCCCCcccCCCCCCcccccceeccccCCHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCchhhhhhhhcCCCCcchhhcccCCCCCceEEEecccccCCCCCHHHHHHHHHHHHHHHHCCCEEeeccCCCchh
Q 009709 275 GFDSRDYEATSEAARYIPVGGYKQFLNENGLKGKRLGVVRNLFSNALNGSTVITAFENHLNTLRQSGATIVDDLEMANVD 354 (528)
Q Consensus 275 g~d~~d~~~~~~~~~~~p~~~~~~~~~~~~~~~lRIGv~~~~~~~~~~~~~v~~a~~~a~~~L~~~G~~vve~~~~p~~~ 354 (528)
|+|+.|+.+...| ..+|...+. .+++++||||+.+++.. .++|+++++++++++.|+++||+|++ +++|.++
T Consensus 232 g~d~~d~~~~~~~-----~~~~~~~~~-~~~~~lrigv~~~~~~~-~~~~~v~~a~~~a~~~L~~~G~~v~~-~~~p~~~ 303 (485)
T 3ip4_A 232 GADVNDSTSAPVD-----DVDFTSEIG-KDIKGLKVALPKEYLGE-GVADDVKEAVQNAVETLKSLGAVVEE-VSLPNTK 303 (485)
T ss_dssp SCCTTCTTSCCCC-----CCCCSTTTT-CCCTTCEEEEEGGGGST-TSCHHHHHHHHHHHHHHHHTTCEEEE-ECCTTGG
T ss_pred CCCcccccccccC-----ccchhhhhc-cCccCcEEEEECCcccC-CCCHHHHHHHHHHHHHHHHCCCEEEE-eCCCcHH
Confidence 9999997654332 224554443 36789999999886543 68999999999999999999999998 7888665
Q ss_pred hhcCCCCchhHHHHHHHHHHHHHHHHHhh---ccCCccchHHHHHHhhhchhhhhhhhcChhHHHh---hh--hcCCC-c
Q 009709 355 VISNPGKSGELTAMLAGFKIALNEYLQEL---VSSPVRSLADVIAFNQNNADMEKTKEYGQGTFIS---AE--KTSGF-G 425 (528)
Q Consensus 355 ~~~~~~~~~~~~~~~~e~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~-~ 425 (528)
... ..+..++..|+..++..|.... ......++.+++...+ ...+++.+..+ .. ..... .
T Consensus 304 ~~~----~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~g~~~~~~~~~~ 372 (485)
T 3ip4_A 304 FGI----PSYYVIASSEASSNLSRFDGIRYGYHSKEAHSLEELYKMSR-------SEGFGKEVKRRIFLGTFALSSGYYD 372 (485)
T ss_dssp GHH----HHHHHHHHHHHHHHTTTCSSSSSSCCCTTCCSHHHHHHHHH-------HHHSCHHHHHHHHHHHHHHSTTTTT
T ss_pred HHH----HHHHHHHHHHHHHHHHhhhhhhccccccccccHHHHHHhhh-------hhhcCHHHHHHHHhccccccchhhH
Confidence 443 2234555667666554332110 0111233444432211 11222222211 11 01111 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEecCCC---------------------chhhhhccCCCeEeeccccCCCC
Q 009709 426 EKERKAVELMEKLSQDGIEKLMTENELDALVTPGTR---------------------VIPVLALGGYPGITVPAGYEGNQ 484 (528)
Q Consensus 426 ~~~~~a~~~~~~~~~~~~~~~~~~~~~DvLl~Pt~~---------------------~t~~~n~~G~PaisvP~G~~~~G 484 (528)
.+|.++ ++.+..+++.+.++|+ ++|+||+||++ +|.++|++|+|+++||+|+. +|
T Consensus 373 ~~~~~a-~~~r~~~~~~~~~~~~--~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~-~G 448 (485)
T 3ip4_A 373 AYYKKS-QKVRTLIKNDFDKVFE--NYDVVVGPTAPTTAFNLGEEIDDPLTMYANDLLTTPVNLAGLPGISVPCGQS-NG 448 (485)
T ss_dssp TTHHHH-HHHHHHHHHHHHHHHT--TCSEEEEESSSSSCCBTTTSTTCHHHHHGGGTTTHHHHHHTCCEEEEEEEEE-TT
T ss_pred HHHHHH-HHHHHHHHHHHHHHHh--cCCEEEeCCCCCCCCCcccccCChHHHhhhhhhhhhhHhhCCCeEEEeCCcC-CC
Confidence 223344 4455556678999997 59999999975 45679999999999999997 99
Q ss_pred CceEEEEEccCCChHHHHHHHHHHHHHcCCCC
Q 009709 485 MPFGICFGGLKGTEPKLIEIAYAFEQATMIRR 516 (528)
Q Consensus 485 lPvGlQlvg~~~~D~~LL~~A~~lE~~~~~~~ 516 (528)
||+||||+|++|+|++||++|++||++++|+.
T Consensus 449 lPvGlqlvg~~~~d~~lL~~A~~lE~~~~~~~ 480 (485)
T 3ip4_A 449 RPIGLQFIGKPFDEKTLYRVAYQYETQYNLHD 480 (485)
T ss_dssp EEEEEEEECSTTCHHHHHHHHHHHHHHSCCTT
T ss_pred CCEeEEEEcCCCCHHHHHHHHHHHHHhcCccc
Confidence 99999999999999999999999999999864
No 3
>3h0l_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_A 3h0r_A*
Probab=100.00 E-value=4.1e-101 Score=813.90 Aligned_cols=445 Identities=27% Similarity=0.387 Sum_probs=367.3
Q ss_pred ccccCHHHHHHHHHCCCCCHHHHHHHHHHHHHHhCCCccEEEeeCHh-HHHHHHHHHHHhHHhcCCCCCCCcccceeeee
Q 009709 37 IIEATIDEIQTAFDQNKLTSTQLVEFYITQIETLNPRLRSVIEVNPD-ARSQAEKADLARKRNQGRRFLGELHGIPVLLK 115 (528)
Q Consensus 37 ~~~~~~~~l~~~~~~g~~t~~ev~~~~l~ri~~~~~~~na~~~~~~~-a~~~A~~~d~~~~~~~~g~~~gpL~GiPi~vK 115 (528)
+.++|+.+|+++|++|++|++||+++||+||+++|+.+|||+++++| |+++|+++|++ .||||||||+||
T Consensus 2 l~~~sa~~l~~~i~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~~~~Al~~A~~~d~~---------~gpL~GvPi~vK 72 (478)
T 3h0l_A 2 LWKKSLSELRELLKRGEVSPKEVVESFYDRYNQTEEKVKAYITPLYGKALKQAESLKER---------ELPLFGIPIAVK 72 (478)
T ss_dssp CTTSCHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHTCCCT---------TSTTTTCEEEEE
T ss_pred CCcCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCcCcEEEEeChHHHHHHHHhhchh---------cCCcCCceEEEE
Confidence 56789999999999999999999999999999999999999999998 99999887732 689999999999
Q ss_pred cCcCccCCCcCCccchhhcCCCCCCChHHHHHHHHcCCeEEEecChhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 009709 116 DTFATKDKLNTSAGSYALVGSVVPRDATVVERLRDAGAVILGKASLTEWYSFRALGKIPNGWCARAGQAKNPYLPSGDPC 195 (528)
Q Consensus 116 D~~~~~g~~~tt~Gs~~~~~~~~~~da~~V~~L~~aGaii~GkTn~~E~a~~~~~~~~~~~~~~~~G~~~NP~~~~~~~G 195 (528)
|||+++| ++||+||+.++++++.+||++|+|||+|||||+||||||||++ +..++|++||+|+||||++|+||
T Consensus 73 D~~~~~G-~~tt~Gs~~~~~~~~~~da~~V~rL~~aGaii~GKTn~~E~~~------~~~~~n~~~G~t~NP~~~~~~~G 145 (478)
T 3h0l_A 73 DNILVEG-EKTTCASKILENFVAPYDATVIERLKKAGALIVGKTNLDEFAM------GSSTEYSAFFPTKNPWDLERVPG 145 (478)
T ss_dssp TTBCCTT-SBCCTTCGGGTTCBCSSCCHHHHHHHHTTCEEEEEECCSGGGC------CSSSTTCSSCCCCCTTCTTBCCC
T ss_pred cCccCCC-CCcCCcCHhhcCCCCCCCHHHHHHHHHCCCEEEEEeCchhhhc------CCCCCCCCCCCcCCCccCCCCCC
Confidence 9999996 9999999999999999999999999999999999999999998 66789999999999999999999
Q ss_pred CCChhHHHHHHhccceeecccccCCccccccccCCcceecCCCCceeCCCCCCCCCCCcccccccCCHHHHHHHHHHHhC
Q 009709 196 GSSSGSAISVAANMVTVSLGSETHGSILCPADRNSVVGLKPTVGLTSRAGVIPVLPQHDTIGAISRTVSDAVYLLDVIVG 275 (528)
Q Consensus 196 GSSgGsaaaVAag~~~~alGtDtgGSiRiPAa~~Gv~GlKPT~G~vs~~G~~p~~~~~d~~GpmaRsv~D~a~~l~~l~g 275 (528)
|||||||+|||+|++++|+|||||||||+||+||||||||||+|+||+.|++|+++++|++|||||||+|+++++++|+|
T Consensus 146 GSSgGsaaaVAag~~~~a~GtDtgGSiR~PAa~cGv~GlKPT~G~v~~~g~~~~~~~~d~~Gp~arsv~D~a~~l~vl~g 225 (478)
T 3h0l_A 146 GSSGGSAASVAVLSAPVSLGSDTGGSIRQPASFCGVIGIKPTYGRVSRYGLVAFASSLDQIGVFGRRTEDVALVLEVISG 225 (478)
T ss_dssp SSSHHHHHHHHHTSSSCEEEECSSSTTHHHHHHHTCEEEECCTTSBCCTTBCCSCTTTCCEEEEESSHHHHHHHHHHHBS
T ss_pred cchHHHHHHHHCCCCceeeecCCCCcchhhhHHhCCeeEeCCCCcccCCCCCCCccCCCeecceeCCHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCchhhhhhhhcCCCCcchhhcccCCCCCceEEEecccccCCCCCHHHHHHHHHHHHHHHHCCCEEeeccCCCchhh
Q 009709 276 FDSRDYEATSEAARYIPVGGYKQFLNENGLKGKRLGVVRNLFSNALNGSTVITAFENHLNTLRQSGATIVDDLEMANVDV 355 (528)
Q Consensus 276 ~d~~d~~~~~~~~~~~p~~~~~~~~~~~~~~~lRIGv~~~~~~~~~~~~~v~~a~~~a~~~L~~~G~~vve~~~~p~~~~ 355 (528)
+|+.|+.+... |..+|...+. .+++++||||+.+++.. .++|+++++++++++.|+++||+|++ +++|.++.
T Consensus 226 ~d~~d~~~~~~-----p~~~~~~~~~-~~~~~lrIgv~~~~~~~-~~~p~v~~a~~~a~~~L~~~G~~v~~-v~~p~~~~ 297 (478)
T 3h0l_A 226 WDEKDSTSAKV-----PVPEWSEEVK-KEVKGLKIGLPKEFFEY-ELQPQVKEAFENFIKELEKEGFEIKE-VSLPHVKY 297 (478)
T ss_dssp CCTTCTTSCCC-----CCCCHHHHTT-CCCTTCEEEEEGGGGGS-CCCHHHHHHHHHHHHHHHHTTCEEEE-ECCTTGGG
T ss_pred CCccccccccc-----Cccchhhhhc-cCCCCCEEEEECCcccC-CCCHHHHHHHHHHHHHHHHCCCEEEE-eCCCcHHH
Confidence 99999765433 2224555443 46789999999886553 68999999999999999999999998 78886654
Q ss_pred hcCCCCchhHHHHHHHHHHHHHHHHHhhcc---CCccchHHHHHHhhhchhhhhhhhcChhHHHh---hh--hcCCC-cH
Q 009709 356 ISNPGKSGELTAMLAGFKIALNEYLQELVS---SPVRSLADVIAFNQNNADMEKTKEYGQGTFIS---AE--KTSGF-GE 426 (528)
Q Consensus 356 ~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~-~~ 426 (528)
.. ..+..++..|+..++..|...... .....+.+++...+ ...+++.+..+ .. ..... ..
T Consensus 298 ~~----~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~g~~~~~~~~~~~ 366 (478)
T 3h0l_A 298 SI----PTYYIIAPSEASSNLARYDGVRYGYRAKEYKDIFEMYARTR-------DEGFGPEVKRRIMLGTFALSAGYYDA 366 (478)
T ss_dssp HH----HHHHHHHHHHHHHHTTTCSSSSSSCCCSCCSSHHHHHHHHH-------HHHSCHHHHHHHHHHHHHTSTTTTTT
T ss_pred HH----HHHHHHHHHHHHHHHHHhhhhhhcccccccccHHHHHHHhh-------hhhcCHHHHHHHHhhchhccchhhHH
Confidence 43 233456666776655443221100 11223444332211 11223322211 11 01111 12
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcEEEecCCC---------------------chhhhhccCCCeEeeccccCCCCC
Q 009709 427 KERKAVELMEKLSQDGIEKLMTENELDALVTPGTR---------------------VIPVLALGGYPGITVPAGYEGNQM 485 (528)
Q Consensus 427 ~~~~a~~~~~~~~~~~~~~~~~~~~~DvLl~Pt~~---------------------~t~~~n~~G~PaisvP~G~~~~Gl 485 (528)
+|.++ ++.++.+++.+.++|+ ++|+||+||++ +|.++|++|+|+++||+|+ .+||
T Consensus 367 ~~~~a-~~~r~~~~~~~~~~~~--~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~-~~Gl 442 (478)
T 3h0l_A 367 YYLKA-QKVRRLITNDFLKAFE--EVDVIASPTTPTLPFKFGERLENPIEMYLSDILTVPANLAGLPAISIPIAW-KDGL 442 (478)
T ss_dssp THHHH-HHHHHHHHHHHHHHTT--TCSEEEEESCSSSCCBTTTTSSSHHHHHGGGTTTHHHHHHTCCEEEEEEEE-ETTE
T ss_pred HHHHH-HHHHHHHHHHHHHHHh--cCCEEEcCCCCCCCCCcccccCChHhhhhhhhhhhhhHhhCCCeEEEeCCC-CCCC
Confidence 23344 4445556677999997 59999999975 4567999999999999999 7999
Q ss_pred ceEEEEEccCCChHHHHHHHHHHHHHcCCCCCCCC
Q 009709 486 PFGICFGGLKGTEPKLIEIAYAFEQATMIRRPPFV 520 (528)
Q Consensus 486 PvGlQlvg~~~~D~~LL~~A~~lE~~~~~~~~p~~ 520 (528)
|+||||+|++|+|+.||++|++||++++|+...+|
T Consensus 443 PvGlQlvg~~~~D~~LL~~A~~lE~~~~~~~~~p~ 477 (478)
T 3h0l_A 443 PVGGQLIGKHWDETTLLQISYLWEQKFKHYEKIPL 477 (478)
T ss_dssp EEEEEEEECTTCHHHHHHHHHHHHHHSCGGGCCSC
T ss_pred CeEEEEECCCCCHHHHHHHHHHHHHhcCcccCCCC
Confidence 99999999999999999999999999998766554
No 4
>2dc0_A Probable amidase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Thermus thermophilus}
Probab=100.00 E-value=2.8e-99 Score=792.18 Aligned_cols=404 Identities=25% Similarity=0.347 Sum_probs=345.1
Q ss_pred cCHHHHHHHHHCCCCCHHHHHHHHHHHHHHhCCCccEEEeeCHh-HHHHHHHHHHHhHHhcCCCCCCCcccceeeeecCc
Q 009709 40 ATIDEIQTAFDQNKLTSTQLVEFYITQIETLNPRLRSVIEVNPD-ARSQAEKADLARKRNQGRRFLGELHGIPVLLKDTF 118 (528)
Q Consensus 40 ~~~~~l~~~~~~g~~t~~ev~~~~l~ri~~~~~~~na~~~~~~~-a~~~A~~~d~~~~~~~~g~~~gpL~GiPi~vKD~~ 118 (528)
+|+.+|+++|++|++|++||+++||+||+++|+ +|||+++++| |+++|+++|+++ ++|+.+||||||||+|||||
T Consensus 1 ~~~~~l~~~~~~g~~s~~el~~a~l~ri~~~~~-lna~~~~~~~~Al~~A~~~d~~~---~~g~~~gpL~GvPi~vKD~~ 76 (434)
T 2dc0_A 1 MDLLEAKRLLETGRTTPLALLEEALERAKAFQD-RNALAYLDEEAARKEALALTEEL---RRGQVRGPLHGLPLTVKDLF 76 (434)
T ss_dssp CCHHHHHHHHHTTSCCHHHHHHHHHHHHHHTGG-GCCEEEECHHHHHHHHHHHHHHH---HTTCCCSTTTTCEEEEETTS
T ss_pred CCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-CcEEEEcCHHHHHHHHHHHHHHH---hcCCCCCCcCCeeEEEEecc
Confidence 478999999999999999999999999999999 9999999998 999999999988 77888999999999999999
Q ss_pred CccCCCcCCccchhhcCCCC-CCChHHHHHHHHcCCeEEEecChhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 009709 119 ATKDKLNTSAGSYALVGSVV-PRDATVVERLRDAGAVILGKASLTEWYSFRALGKIPNGWCARAGQAKNPYLPSGDPCGS 197 (528)
Q Consensus 119 ~~~g~~~tt~Gs~~~~~~~~-~~da~~V~~L~~aGaii~GkTn~~E~a~~~~~~~~~~~~~~~~G~~~NP~~~~~~~GGS 197 (528)
+++| ++||+||+.+ ++| .+||++|+|||+|||||+||||||||++ +..++|++||+|+||||++|+||||
T Consensus 77 ~v~G-~~tt~Gs~~~--~~~a~~dA~vV~rL~~aGAii~GKTn~~Efa~------~~~~~n~~~G~t~NP~~~~~~pGGS 147 (434)
T 2dc0_A 77 PVKG-MPTRAGTKAP--LPPLPEEARAVRRLREAGALLFAKTNMHEIAL------GITGENPWTGPVRNAVDPSRQAGGS 147 (434)
T ss_dssp CBTT-BCCCTTCSSC--CCCCCSSCHHHHHHHHTTCEEEEEECCSGGGC------CSSCCCTTTCCCBCSSCTTBBCCSS
T ss_pred ccCC-cccCCCCccc--CCCCCCCHHHHHHHHHCCCEEEEEeChhHHhc------CCCCCCCCCCCCCCCCCCCCCCccc
Confidence 9996 9999999999 677 8999999999999999999999999998 6678999999999999999999999
Q ss_pred ChhHHHHHHhccceeecccccCCccccccccCCcceecCCCCceeCCCCCCCCCCCcccccccCCHHHHHHHHHHHhCCC
Q 009709 198 SSGSAISVAANMVTVSLGSETHGSILCPADRNSVVGLKPTVGLTSRAGVIPVLPQHDTIGAISRTVSDAVYLLDVIVGFD 277 (528)
Q Consensus 198 SgGsaaaVAag~~~~alGtDtgGSiRiPAa~~Gv~GlKPT~G~vs~~G~~p~~~~~d~~GpmaRsv~D~a~~l~~l~g~d 277 (528)
|||||||||+|++++|+|||||||||+||+||||||||||+|+||+.|++|+++++|++|||||||+|+++++++|+|+
T Consensus 148 SgGsAaaVAag~~~~alGtDtgGSIRiPAa~cGv~GlKPT~G~vs~~g~~~~~~s~d~~Gp~arsv~D~a~~l~~l~g~- 226 (434)
T 2dc0_A 148 SGGSAVAVALGIGLASLGTDTGGSIRIPAGFNGVVGFKPSYGRVSLEGALPLSRSTDHAGPLTRSVRDAHFLTEILAGE- 226 (434)
T ss_dssp SHHHHHHHHHTSSSCEEEECSSSTTHHHHHHHTCEEEECSTTSSCCTTSCCSCTTTCCEEEEESSHHHHHHHHHHHHTS-
T ss_pred HHHHHHHHHcCCCceeeecCCChhhhhhHHhCCCEEEECCCCCCCCCCCCCCCCccCeeCcccCCHHHHHHHHHHHhCC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCchhhhhhhhcCCCCcchhhcccCCCCCceEEEecccccCCCCCHHHHHHHHHHHHHHHHCCCEEeeccCCCchhhhc
Q 009709 278 SRDYEATSEAARYIPVGGYKQFLNENGLKGKRLGVVRNLFSNALNGSTVITAFENHLNTLRQSGATIVDDLEMANVDVIS 357 (528)
Q Consensus 278 ~~d~~~~~~~~~~~p~~~~~~~~~~~~~~~lRIGv~~~~~~~~~~~~~v~~a~~~a~~~L~~~G~~vve~~~~p~~~~~~ 357 (528)
+.|+ ..++++||||+.++++. .++|+++++++++++.|+++||+|++ +++| +++..
T Consensus 227 ~~d~---------------------~~~~~lrig~~~~~~~~-~~~~~v~~a~~~a~~~L~~~G~~v~~-~~~p-~~~~~ 282 (434)
T 2dc0_A 227 SIPL---------------------EGVQNPVFGVPLDFLEG-RLGVEVRKAFTRLLEDLPALRAEVRE-VSLP-LEGVY 282 (434)
T ss_dssp CCCC---------------------CCCCSCEEEECHHHHTT-CSCHHHHHHHHHHHHHTTTTTCEEEE-CCCC-CTTHH
T ss_pred CCCc---------------------ccccCCEEEEECccccC-CCCHHHHHHHHHHHHHHHHCCCEEEE-eCCC-cHHHH
Confidence 6653 13467899999886543 58999999999999999999999998 6777 54432
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHhhccCCccchHHHHHHhhhchhhhhhhhcChhHHHhhhhcCCC-cHHHHHHHHHHH
Q 009709 358 NPGKSGELTAMLAGFKIALNEYLQELVSSPVRSLADVIAFNQNNADMEKTKEYGQGTFISAEKTSGF-GEKERKAVELME 436 (528)
Q Consensus 358 ~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~~~~ 436 (528)
. .+..++..|+...+..++... ...+.+.+.......... ..+|.++. +.+
T Consensus 283 ~----~~~~~~~~e~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~g~~~~~~~~~~a~-~~r 334 (434)
T 2dc0_A 283 E----VYTRLVRYEAARIHEKALKEH-----------------------PEGFSPQVREALLAGLALTEKDYRDAV-AER 334 (434)
T ss_dssp H----HHHHHHHHHHHHHSHHHHHHC-----------------------GGGSCHHHHHHHHHHHHSCHHHHHHHH-HHH
T ss_pred H----HHHHHHHHHHHHHHHHHHHhc-----------------------hhhcCHHHHHHHHhcCCCCHHHHHHHH-HHH
Confidence 1 234455566655443333210 012222222211121122 23444444 445
Q ss_pred HHHHHHHHHHHhcCCCcEEEecCCC--------------------------chhhhhccCCCeEeeccccCCCCCceEEE
Q 009709 437 KLSQDGIEKLMTENELDALVTPGTR--------------------------VIPVLALGGYPGITVPAGYEGNQMPFGIC 490 (528)
Q Consensus 437 ~~~~~~~~~~~~~~~~DvLl~Pt~~--------------------------~t~~~n~~G~PaisvP~G~~~~GlPvGlQ 490 (528)
+.+++.+.++|+ ++|+||+|+++ ||.++|++|+|+++||+|+ .+|||+|||
T Consensus 335 ~~~~~~~~~~~~--~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~-~~GlPvGvq 411 (434)
T 2dc0_A 335 EALRLELVKALR--GVDALLLPVQPLPAPPLGTEEVELESGRKGHREAFITLTLPFSLLGVPTLALPFAK-VEGMPVGLQ 411 (434)
T ss_dssp HHHHHHHHHHHT--TSSEEEEESCSSSCCBTTCCEEEETTEEEEHHHHHHTTTHHHHHTTCCEEEEEEEE-ETTEEEEEE
T ss_pred HHHHHHHHHHHh--cCCEEEECCCCCCCccCcccccccccchhhhhhhhhhhhhhhhhhCCCeEEEecCC-CCCCCeEEE
Confidence 556677999997 59999999974 2456899999999999999 799999999
Q ss_pred EEccCCChHHHHHHHHHHHHHc
Q 009709 491 FGGLKGTEPKLIEIAYAFEQAT 512 (528)
Q Consensus 491 lvg~~~~D~~LL~~A~~lE~~~ 512 (528)
|+|++|+|+.||++|++||+++
T Consensus 412 lvg~~~~d~~lL~~A~~lE~~~ 433 (434)
T 2dc0_A 412 VVGAYGEDGKVLALGGWLEARL 433 (434)
T ss_dssp EECCTTCHHHHHHHHHHHHTTC
T ss_pred EECCCCchHHHHHHHHHHHHhh
Confidence 9999999999999999999865
No 5
>3kfu_E Glutamyl-tRNA(Gln) amidotransferase subunit A; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus}
Probab=100.00 E-value=7.2e-100 Score=802.21 Aligned_cols=434 Identities=29% Similarity=0.415 Sum_probs=358.5
Q ss_pred cCHHHHHHHHHCCCCCHHHHHHHHHHHHHHhCCCccEEEeeCHh-HHHHHHHHHHHhHHhcCCCCCCCcccceeeeecCc
Q 009709 40 ATIDEIQTAFDQNKLTSTQLVEFYITQIETLNPRLRSVIEVNPD-ARSQAEKADLARKRNQGRRFLGELHGIPVLLKDTF 118 (528)
Q Consensus 40 ~~~~~l~~~~~~g~~t~~ev~~~~l~ri~~~~~~~na~~~~~~~-a~~~A~~~d~~~~~~~~g~~~gpL~GiPi~vKD~~ 118 (528)
|++.+|+++|++|++|++||+++||+||+++|+.+|||++++ | |+++|+++|++ .|||||||+|||||
T Consensus 1 ~~a~~l~~~~~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~-~~al~~A~~~d~~----------~pL~GvPi~vKD~~ 69 (471)
T 3kfu_E 1 MLAHEIRARVARGEVSPLEVAQAYLKRVQELDPGLGAFLSLN-ERLLEEAEAVDPG----------LPLAGLVVAVKDNI 69 (471)
T ss_dssp -CHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHCCEEEEC-CTTTHHHHTSCCS----------CTTTTCEEEEETTB
T ss_pred CcHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCccEEEEeC-HHHHHHHHhcCcc----------CCcCCCeEEEECCc
Confidence 578999999999999999999999999999999999999999 8 99999987742 19999999999999
Q ss_pred CccCCCcCCccchhhcCCCCCCChHHHHHHHHcCCeEEEecChhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 009709 119 ATKDKLNTSAGSYALVGSVVPRDATVVERLRDAGAVILGKASLTEWYSFRALGKIPNGWCARAGQAKNPYLPSGDPCGSS 198 (528)
Q Consensus 119 ~~~g~~~tt~Gs~~~~~~~~~~da~~V~~L~~aGaii~GkTn~~E~a~~~~~~~~~~~~~~~~G~~~NP~~~~~~~GGSS 198 (528)
+++| ++||+||+.++++++.+||++|+|||+|||||+||||||||++ +..++|++||+|+||||++|+|||||
T Consensus 70 ~~~G-~~tt~Gs~~~~~~~~~~da~~V~rL~~aGaii~GKTn~~E~~~------~~~~~n~~~G~t~NP~~~~~~~GGSS 142 (471)
T 3kfu_E 70 ATRG-LRTTAGSRLLENFVPPYEATAVARLKALGALVLGKTNLDEFGM------GSSTEHSAFFPTKNPFDPDRVPGGSS 142 (471)
T ss_dssp CCTT-SCCCTTCSTTTTCCCSSCCHHHHHHHTTTCEEEEEECCSGGGC------CSSSTTCSSCCCCBTTBTTBCCCSSS
T ss_pred ccCC-ccccccCHhHcCCCCCCChHHHHHHHHCCCEEEeecCcCchhc------CCCCCCCCCCCcCCCCccCcCCCCCc
Confidence 9996 9999999999999999999999999999999999999999998 66789999999999999999999999
Q ss_pred hhHHHHHHhccceeecccccCCccccccccCCcceecCCCCceeCCCCCCCCCCCcccccccCCHHHHHHHHHHHhCCCC
Q 009709 199 SGSAISVAANMVTVSLGSETHGSILCPADRNSVVGLKPTVGLTSRAGVIPVLPQHDTIGAISRTVSDAVYLLDVIVGFDS 278 (528)
Q Consensus 199 gGsaaaVAag~~~~alGtDtgGSiRiPAa~~Gv~GlKPT~G~vs~~G~~p~~~~~d~~GpmaRsv~D~a~~l~~l~g~d~ 278 (528)
||||+|||+|++++|+|||||||||+||+||||||||||+|+||+.|++|+++++|++|||||||+|+++++++|+|+|+
T Consensus 143 gGsaaaVAag~~~~a~GtDtgGSiR~PAa~cGv~GlKPT~G~v~~~g~~~~~~~~d~~Gp~arsv~D~a~~~~~l~g~d~ 222 (471)
T 3kfu_E 143 GGSAAALAADLAPLALGSDTGGSVRQPAAFCGVYGLKPTYGRVSRFGLIAYASSLDQIGPMARSVRDLALLMDAAAGPDP 222 (471)
T ss_dssp HHHHHHHHTTSCSEEEEEESSSTTHHHHHHTTCEEEECCTTSSCCTTBCCSCTTTCEEEEEESSHHHHHHHHHHHCSCCT
T ss_pred HHHHHHHHCCCCccccccCCCCccccChhhcCceeeeCCCCCccCCCCCCcccccCeecceeCCHHHHHHHHHHhcCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhhhhhhhcCCCCcchhhcccCCCCCceEEEecccccCCCCCHHHHHHHHHHHHHHHHCCCEEeeccCCCchhhhcC
Q 009709 279 RDYEATSEAARYIPVGGYKQFLNENGLKGKRLGVVRNLFSNALNGSTVITAFENHLNTLRQSGATIVDDLEMANVDVISN 358 (528)
Q Consensus 279 ~d~~~~~~~~~~~p~~~~~~~~~~~~~~~lRIGv~~~~~~~~~~~~~v~~a~~~a~~~L~~~G~~vve~~~~p~~~~~~~ 358 (528)
.|+.+... | .+|...+. ..++++||||+.+++ ..++|+++++++++++.|+++||+|++ +++|.+++..
T Consensus 223 ~d~~~~~~-----~-~~~~~~~~-~~~~~lrIgv~~~~~--~~~~p~v~~a~~~a~~~L~~~G~~v~~-v~~p~~~~~~- 291 (471)
T 3kfu_E 223 LDATSLDL-----P-PRFQEALE-GPLPPLRLGVVREAL--AGNSPGVERALEEALKVFRELGLSVRE-VSWPSLPQAL- 291 (471)
T ss_dssp TCTTCCCC-----C-CCTTCCSC-CCCSSCEEEEEGGGT--TTCCHHHHHHHHHHHHHHHTTTCEEEE-ECCTTGGGHH-
T ss_pred ccccccCC-----C-cchhhhhc-cCCCCCEEEEECCcc--CCCCHHHHHHHHHHHHHHHHcCCeeee-ecCccHHHHH-
Confidence 99765432 2 23443333 357899999998865 368999999999999999999999998 7888765543
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHhhccCC--ccchHHHHHHhhhchhhhhhhhcChhHHHhh---hh--cCCC-cHHHHH
Q 009709 359 PGKSGELTAMLAGFKIALNEYLQELVSSP--VRSLADVIAFNQNNADMEKTKEYGQGTFISA---EK--TSGF-GEKERK 430 (528)
Q Consensus 359 ~~~~~~~~~~~~e~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~-~~~~~~ 430 (528)
..+..++..|+..++..|........ ...+.+++...+. .+++.+..+. .. .... ..+|.+
T Consensus 292 ---~~~~~~~~~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 360 (471)
T 3kfu_E 292 ---AAYYILAPAEASSNLARYDGTLYGRRAAGEEVEGMMEATRA--------LFGLEVKRRVLVGTFVLSSGYYEAYYGR 360 (471)
T ss_dssp ---HHHHHHHHHHHHHHGGGCSTTTTSCCCCCSSSHHHHHHHHT--------TSCHHHHHHHHHHHHHHSTTTTTTTHHH
T ss_pred ---HHHHHHHHHHHHHHHHHhhhhccccccchhhHHHHHHhhhh--------hcCHHHHHHHHhcccccccccCHHHHHH
Confidence 23455666777666554432111110 1233343322111 1333222111 00 1111 123444
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcEEEecCCC--------------------chhhhhccCCCeEeeccccCCCCCceEEE
Q 009709 431 AVELMEKLSQDGIEKLMTENELDALVTPGTR--------------------VIPVLALGGYPGITVPAGYEGNQMPFGIC 490 (528)
Q Consensus 431 a~~~~~~~~~~~~~~~~~~~~~DvLl~Pt~~--------------------~t~~~n~~G~PaisvP~G~~~~GlPvGlQ 490 (528)
+ ++.+..+++.+.++|+ ++|+||+||++ ||.++|++|+|+++||+|+ .+|||+|||
T Consensus 361 a-~~~r~~~~~~~~~~~~--~~Dvll~Pt~~~~a~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~-~~GlPvGlQ 436 (471)
T 3kfu_E 361 A-QAFRRRLKAEAQALFR--EVDLLLLPTTPHPAFPFGARRDPLAMYREDLYTVGANLTGLPALSFPAGF-EGHLPVGLQ 436 (471)
T ss_dssp H-HHHHHHHHHHHHHHTT--TCSEEEEESCSSSCCBTTTTCSHHHHHGGGTTTHHHHHHCCCEEEEEEEE-ETTEEEEEE
T ss_pred H-HHHHHHHHHHHHHHHh--cCCEEEeCCcCCCCCccccccchHHHHHHhhhhhcchhhCCCeEEEeCCC-CCCCCeEEE
Confidence 4 4445555677999997 59999999986 4568999999999999999 899999999
Q ss_pred EEccCCChHHHHHHHHHHHHHc-CCCCC
Q 009709 491 FGGLKGTEPKLIEIAYAFEQAT-MIRRP 517 (528)
Q Consensus 491 lvg~~~~D~~LL~~A~~lE~~~-~~~~~ 517 (528)
|+|++|+|+.||++|++||+++ +|+..
T Consensus 437 lvg~~~~D~~LL~~A~~lE~~~g~w~~~ 464 (471)
T 3kfu_E 437 LLAPWGEDERLLRAALAFEEATARAHLK 464 (471)
T ss_dssp EECSTTCHHHHHHHHHHHHHHSSCCCCC
T ss_pred EECCCCCHHHHHHHHHHHHHHhcCcccC
Confidence 9999999999999999999999 88643
No 6
>3a2q_A 6-aminohexanoate-cyclic-dimer hydrolase; alpha/beta fold, nylon degradation; 1.80A {Arthrobacter SP} PDB: 3a2p_A
Probab=100.00 E-value=3.9e-98 Score=796.96 Aligned_cols=429 Identities=22% Similarity=0.273 Sum_probs=353.2
Q ss_pred ccccccCHHHHHHHHHCCCCCHHHHHHHHHHHHHHhCCCccEEEeeCHh-HHHHHHHHHHHhHHhcCCCCCCCcccceee
Q 009709 35 FTIIEATIDEIQTAFDQNKLTSTQLVEFYITQIETLNPRLRSVIEVNPD-ARSQAEKADLARKRNQGRRFLGELHGIPVL 113 (528)
Q Consensus 35 ~~~~~~~~~~l~~~~~~g~~t~~ev~~~~l~ri~~~~~~~na~~~~~~~-a~~~A~~~d~~~~~~~~g~~~gpL~GiPi~ 113 (528)
.++.+ ++.+|+++|++|++|++||+++||+||++.|+.+|||+++++| |+++|++ | .||||||||+
T Consensus 4 ~~~~~-~~~~l~~~i~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~~~~Al~~A~~-d-----------~gpL~GvPi~ 70 (493)
T 3a2q_A 4 VDLWQ-DATAQAELVRSGEISRTELLEATIAHVQAVNPEINAVIIPLFEKARRESEL-A-----------SGPFAGVPYL 70 (493)
T ss_dssp CCTTS-CHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHH-C-----------CSTTTTCEEE
T ss_pred hhhhh-hHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCccCeEEecCHHHHHHHhhh-c-----------CCCcCCcEEE
Confidence 46777 9999999999999999999999999999999999999999998 9999976 5 3799999999
Q ss_pred eecCc-CccCCCcCCccchhhc--CCCCCCChHHHHHHHHcCCeEEEecChhhhhhcccCCCCCCCCCCCCCCCCCCCCC
Q 009709 114 LKDTF-ATKDKLNTSAGSYALV--GSVVPRDATVVERLRDAGAVILGKASLTEWYSFRALGKIPNGWCARAGQAKNPYLP 190 (528)
Q Consensus 114 vKD~~-~~~g~~~tt~Gs~~~~--~~~~~~da~~V~~L~~aGaii~GkTn~~E~a~~~~~~~~~~~~~~~~G~~~NP~~~ 190 (528)
||||| +++| ++||+||+.++ ++++.+||++|+|||+|||||+||||||||++ +..++|++||+|+||||+
T Consensus 71 vKD~~~~v~G-~~Tt~Gs~~~~~~~~~~~~dA~vV~rLr~AGAii~GKTn~~Efa~------~~~~~n~~~G~t~NP~~~ 143 (493)
T 3a2q_A 71 LKDLTVVSQG-DINTSSIKGMKESGYRADHDAYFVQRMRAAGFVLLGKTNTPEMGN------QVTTEPEAWGATRNPWNL 143 (493)
T ss_dssp EESSSSCCTT-SBCCTTCHHHHHHTCBCSSCCHHHHHHHHHTCEEEEEECCSGGGC------SSSCCCTTTCCCCBTTBT
T ss_pred EecCCcCcCC-CcccccChhhhhcCCCCCCCHHHHHHHHHCCCceEEEcChhhhhc------CCCCCCCCCCCCCCCCCC
Confidence 99999 9996 99999999999 99999999999999999999999999999998 667899999999999999
Q ss_pred CCCCCCCChhHHHHHHhccceeecccccCCccccccccCCcceecCCCCceeCCCC--C-CCCCCCcccccccCCHHHHH
Q 009709 191 SGDPCGSSSGSAISVAANMVTVSLGSETHGSILCPADRNSVVGLKPTVGLTSRAGV--I-PVLPQHDTIGAISRTVSDAV 267 (528)
Q Consensus 191 ~~~~GGSSgGsaaaVAag~~~~alGtDtgGSiRiPAa~~Gv~GlKPT~G~vs~~G~--~-p~~~~~d~~GpmaRsv~D~a 267 (528)
+|+|||||||||||||+|++++|+|||||||||+||+||||||||||+||||+.|+ + ++++++|++|||||||+|++
T Consensus 144 ~~~pGGSSgGsAAAVAaG~~~~alGtDtgGSIRiPAa~cGv~GlKPT~Grvs~~g~~~~~~~~~sld~~Gp~arsv~D~a 223 (493)
T 3a2q_A 144 GRSVGGSSGGSGAAVAAALSPVAHGNDAAGAVRIPASVCGVVGLKPTRGRISPGPLVTDSDNVAGAAHEGLFARSVRDIA 223 (493)
T ss_dssp TBCCCSSSHHHHHHHHTTSCSEEEEEESSSTTHHHHHHHTSEEEECSTTSBCCCSSCCHHHHHHTTCEEEEEESSHHHHH
T ss_pred CCCCCcCcHHHHHHHHcCCCceeeecCCCcccccchhhcCcceEEcCCCccCCCCCcccccccccCceecCccCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998 5 77889999999999999999
Q ss_pred HHHHHHhCCCCCCchhhhhhhhcCCCCcchhhcccCCCCCceEEEeccccc-CCCCCHHHHHHHHHHHHHHHHCCCEEee
Q 009709 268 YLLDVIVGFDSRDYEATSEAARYIPVGGYKQFLNENGLKGKRLGVVRNLFS-NALNGSTVITAFENHLNTLRQSGATIVD 346 (528)
Q Consensus 268 ~~l~~l~g~d~~d~~~~~~~~~~~p~~~~~~~~~~~~~~~lRIGv~~~~~~-~~~~~~~v~~a~~~a~~~L~~~G~~vve 346 (528)
+++++|+|+|++|+.+... |..+|...+. ..++++||||+.++++ ...++++++++++++++.|+++||+|++
T Consensus 224 ~~l~~l~g~d~~d~~~~~~-----p~~~~~~~~~-~~~~~lrIgv~~~~~~~~~~~~~~v~~a~~~a~~~L~~~G~~v~~ 297 (493)
T 3a2q_A 224 ALLDVVSGHRPGDTFCAPT-----ASRPYAQGIS-ENPGSLRVGVLTHNPVGDFALDPECAAAARGAAAALAALGHDVND 297 (493)
T ss_dssp HHHHHHBSCCTTCSCCCCC-----CSSCHHHHTT-SCCCSCEEEECCSCTTCSSCCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHcCCCCCCcccccC-----CCcchhhhcc-cCCCCCEEEEECCccccCCCCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 9999999999998755332 2224554433 3468899999988652 2358999999999999999999999998
Q ss_pred ccCCCchh--hhcCCCCchhHHHHHHHHHHHHHHHHHhhccCCccchHHHHHHhhhchhhhhhhhcChhHHHhhhhcCCC
Q 009709 347 DLEMANVD--VISNPGKSGELTAMLAGFKIALNEYLQELVSSPVRSLADVIAFNQNNADMEKTKEYGQGTFISAEKTSGF 424 (528)
Q Consensus 347 ~~~~p~~~--~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (528)
+++|.++ ... ..+..++..|+...+..+...+... .+ ...+.+............
T Consensus 298 -~~~~~~~~~~~~----~~~~~~~~~e~~~~~~~~~~~~~~~-------------~~-----~~~~~~~~~~~~~~g~~~ 354 (493)
T 3a2q_A 298 -AYPEALGDRSFL----KDYSTICDVAIAREIERNGELIGRP-------------LT-----EDDVEWTSWEMVKRADQV 354 (493)
T ss_dssp -CCCGGGGCCTHH----HHHHHHHHHHHHHHHHHHHHHHTSC-------------CC-----TTTSCHHHHHHHHHHHTC
T ss_pred -eCCCccCHHHHH----HHHHHHHHHHHHHHHHHHHHHhcCc-------------cC-----hhhcCHHHHHHHHhhccC
Confidence 6766443 221 1234455566655443332211100 00 011222222212222222
Q ss_pred c-HHHHHHHHHHHHHHHHHHHHHH-hcCCCcEEEecCCC---------------------------------chhhhhcc
Q 009709 425 G-EKERKAVELMEKLSQDGIEKLM-TENELDALVTPGTR---------------------------------VIPVLALG 469 (528)
Q Consensus 425 ~-~~~~~a~~~~~~~~~~~~~~~~-~~~~~DvLl~Pt~~---------------------------------~t~~~n~~ 469 (528)
+ .+|.++.+ .++.+++.+.++| + ++|+||+|+++ ||.++|++
T Consensus 355 ~~~~~~~a~~-~r~~~~~~~~~~~~~--~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~nl~ 431 (493)
T 3a2q_A 355 TGRAFAACVD-ELRYYAGKVERWWEA--GWDLLILPTVTRQTPEIGELMLAKGTDLEGRQSAFISGSLQMLAFTVPFNVS 431 (493)
T ss_dssp CHHHHHHHHH-HHHHHHHHHHHHHHT--TCCEEEEESCSSCCCBTTTTCCCTTCCCCSSCGGGSHHHHHHHTTTTHHHHH
T ss_pred CHHHHHHHHH-HHHHHHHHHHHHHhc--CCCEEEcCCCCCCCCCCcccccccccccccccchhhhhhhhhhccccccccc
Confidence 3 34455444 4455567799999 6 59999999853 24568999
Q ss_pred CCCeEeeccccCCCCCceEEEEEccCCChHHHHHHHHHHHHHcCCC
Q 009709 470 GYPGITVPAGYEGNQMPFGICFGGLKGTEPKLIEIAYAFEQATMIR 515 (528)
Q Consensus 470 G~PaisvP~G~~~~GlPvGlQlvg~~~~D~~LL~~A~~lE~~~~~~ 515 (528)
|+|+++||+|++.+|||+||||+|++|+|+.||++|++||++++|+
T Consensus 432 G~PaisvP~g~~~~GlPvGvQlvg~~~~d~~lL~~A~~lE~~~~~~ 477 (493)
T 3a2q_A 432 GQPAISLPIGMSSDGMPIGVQIVAAYGREDLLLQVAAQLEGALPWV 477 (493)
T ss_dssp CCCEEEEEEEECTTSCEEEEEEEESTTCHHHHHHHHHHHHHHSCCT
T ss_pred CCCceeccCCcCCCCCCeEEEEecCCCChHHHHHHHHHHHHhcCcc
Confidence 9999999999988999999999999999999999999999999874
No 7
>2gi3_A Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1272, structural genomics, joint center for structura genomics, JCSG; HET: MSE MPD; 1.80A {Thermotoga maritima} SCOP: c.117.1.1 PDB: 3al0_A*
Probab=100.00 E-value=1.2e-97 Score=789.79 Aligned_cols=437 Identities=27% Similarity=0.399 Sum_probs=346.5
Q ss_pred cccccccCHHHHHHHHHCCCCCHHHHHHHHHHHHHHhCCCccEEEeeCHh-HHHHHHHHHHHhHHhcCCCCCCCccccee
Q 009709 34 QFTIIEATIDEIQTAFDQNKLTSTQLVEFYITQIETLNPRLRSVIEVNPD-ARSQAEKADLARKRNQGRRFLGELHGIPV 112 (528)
Q Consensus 34 ~~~~~~~~~~~l~~~~~~g~~t~~ev~~~~l~ri~~~~~~~na~~~~~~~-a~~~A~~~d~~~~~~~~g~~~gpL~GiPi 112 (528)
.+++.++|+.+| |++|++|++||+++||+||+++|+.+|||+++++| |+ | + . ||||||||
T Consensus 4 ~~~~~~~s~~~l---i~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~~~~al------d------~---~-gpL~GvPi 64 (476)
T 2gi3_A 4 DLDFRKLTIEEC---LKLSEEEREKLPQLSLETIKRLDPHVKAFISVRENVSV------E------K---K-GKFWGIPV 64 (476)
T ss_dssp CSCGGGCCHHHH---TTSCHHHHTTHHHHHHHHHHHHHHHHCCEEEECCCCCC------C------C---C-STTTTCEE
T ss_pred ccccccCCHHHH---HHcCCCCHHHHHHHHHHHHHHhCCceeEEEecChhhhh------h------c---c-CCcCCceE
Confidence 457888899998 99999999999999999999999999999999987 65 2 2 2 89999999
Q ss_pred eeecCcCccCCCcCCccchhhcCCCCCCChHHHHHHHHcCCeEEEecChhhhhhcccCCCCCCCCCCCCCCCCCCCCCCC
Q 009709 113 LLKDTFATKDKLNTSAGSYALVGSVVPRDATVVERLRDAGAVILGKASLTEWYSFRALGKIPNGWCARAGQAKNPYLPSG 192 (528)
Q Consensus 113 ~vKD~~~~~g~~~tt~Gs~~~~~~~~~~da~~V~~L~~aGaii~GkTn~~E~a~~~~~~~~~~~~~~~~G~~~NP~~~~~ 192 (528)
+|||||+++| ++||+||+.++++++.+||++|+|||+|||||+||||||||++ +..++|++||+|+||||++|
T Consensus 65 ~vKD~~~v~G-~~Tt~Gs~~~~~~~~~~dA~vV~rLr~AGAii~GKTn~~Efa~------~~~~~n~~~G~t~NP~~~~~ 137 (476)
T 2gi3_A 65 AIKDNILTLG-MRTTCASRILENYESVFDATVVKKMKEAGFVVVGKANLDEFAM------GSSTERSAFFPTRNPWDLER 137 (476)
T ss_dssp EEETTBCCSS-SCCCTTCGGGTTCCCCSCCHHHHHHHHHTCEEEEEECCSGGGC------CSSSTTCSSCCCCBTTBTTB
T ss_pred EEEcCccCCC-CccCccChhhcCCCCCCChHHHHHHHHCCCEEEEecCchhhhc------CCCCCCCCCCCCCCCCCCCC
Confidence 9999999996 9999999999999999999999999999999999999999998 66789999999999999999
Q ss_pred CCCCCChhHHHHHHhccceeecccccCCccccccccCCcceecCCCCceeCCCCCCCCCCCcccccccCCHHHHHHHHHH
Q 009709 193 DPCGSSSGSAISVAANMVTVSLGSETHGSILCPADRNSVVGLKPTVGLTSRAGVIPVLPQHDTIGAISRTVSDAVYLLDV 272 (528)
Q Consensus 193 ~~GGSSgGsaaaVAag~~~~alGtDtgGSiRiPAa~~Gv~GlKPT~G~vs~~G~~p~~~~~d~~GpmaRsv~D~a~~l~~ 272 (528)
+|||||||||||||+|++++|+|||||||||+||+||||||||||+||||+.|++|+++++|++|||||||+|+++++++
T Consensus 138 ~pGGSSgGsAaAVAag~~~~alGtDtgGSIRiPAa~cGv~GlKPT~G~vs~~G~~p~~~sld~~Gp~arsv~D~a~~l~~ 217 (476)
T 2gi3_A 138 VPGGSSGGSAAAVSAGMVVAALGSDTGGSVRQPASLCGVVGYKPTYGLVSRYGLVAFASSLDQIGPITKTVRDAAILMEI 217 (476)
T ss_dssp CCCSSSHHHHHHHHTTSSSEEEEEESSSTTHHHHHHHTSEEEECCTTSBCCTTBCCSCTTTCEEEEEESSHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHcCCCceEeecCCCchhhhhHHHcCCeEEeCCCCcCCCCCCCCcccCCCeeeeeeCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCCchhhhhhhhcCCCCcchhhcccCCCCCceEEEecccccCCCCCHHHHHHHHHHHHHHHHCCCEEeeccCCCc
Q 009709 273 IVGFDSRDYEATSEAARYIPVGGYKQFLNENGLKGKRLGVVRNLFSNALNGSTVITAFENHLNTLRQSGATIVDDLEMAN 352 (528)
Q Consensus 273 l~g~d~~d~~~~~~~~~~~p~~~~~~~~~~~~~~~lRIGv~~~~~~~~~~~~~v~~a~~~a~~~L~~~G~~vve~~~~p~ 352 (528)
|+|+|+.|+.+... |. +|.+.+. ..++++||||+.+++.. .++++++++++++++.|+++||+|++ +++|.
T Consensus 218 l~g~d~~d~~~~~~-----p~-~~~~~~~-~~~~~lrig~~~~~~~~-~~~~~v~~a~~~a~~~L~~~G~~v~~-~~~p~ 288 (476)
T 2gi3_A 218 ISGRDENDATTVNR-----KV-DFLSEIE-EGVSGMKFAVPEEIYEH-DIEEGVSERFEEALKLLERLGAKVER-VKIPH 288 (476)
T ss_dssp HBSCBTTBTTCCSC-----CC-CSSTTTT-SCCTTCEEEEEGGGGGS-CCCHHHHHHHHHHHHHHHHTTCEEEE-ECCTT
T ss_pred hhCCCCCCccccCC-----Cc-chhhhhh-cCCCCCEEEEECccccC-CCCHHHHHHHHHHHHHHHHCCCEEEE-eCCCc
Confidence 99999988654322 22 3443333 35688999999886543 58999999999999999999999998 68776
Q ss_pred hhhhcCCCCchhHHHHHHHHHHHHHHHHHhhccCCc--cchHHHHHHhhhchhhhhhhhcChhHHHhhhhc-----CCCc
Q 009709 353 VDVISNPGKSGELTAMLAGFKIALNEYLQELVSSPV--RSLADVIAFNQNNADMEKTKEYGQGTFISAEKT-----SGFG 425 (528)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 425 (528)
+.... ..+..++..|+..++..|......... ..+.+++...+. ..+++.+..+.... ....
T Consensus 289 ~~~~~----~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~g~~~~~~~~~ 357 (476)
T 2gi3_A 289 IKYSV----ATYYVIAPAEASSNLARFDGVKYGLRIKEKGLREMYMKTRN-------VGFGEEVRRRIMIGTFTLSAAYY 357 (476)
T ss_dssp GGGHH----HHHHHHHHHHHHTC------------------------CCS-------CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHH----HHHHHHHHHHHHHHHHHhhccccccccccccHHHHHHhhhh-------hhcCHHHHHHHHhccccccchhh
Confidence 54332 123445555665555444321110000 112222211000 01122211111100 0001
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEecCCC--------------------chhhhhccCCCeEeeccccCCCCC
Q 009709 426 EKERKAVELMEKLSQDGIEKLMTENELDALVTPGTR--------------------VIPVLALGGYPGITVPAGYEGNQM 485 (528)
Q Consensus 426 ~~~~~a~~~~~~~~~~~~~~~~~~~~~DvLl~Pt~~--------------------~t~~~n~~G~PaisvP~G~~~~Gl 485 (528)
..++...++.++.+++.++++|++ +|+||+|+++ +|.++|++|+|+++||+|+. +||
T Consensus 358 ~~~~~~a~~~r~~~~~~~~~~~~~--~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~-~Gl 434 (476)
T 2gi3_A 358 EAYFNKAMKVRRKISDELNEVLSQ--YDAILTPTSPVTAFKIGEIKDPLTYYLMDIFTIPANLAGLPAISVPFGFS-NNL 434 (476)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--SSEEEEESCSSCCCBTTTCCCHHHHHTTTTTTHHHHHHTCCEEEEEEEEE-TTE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc--CCEEEeCCCCCCCCcccccccchhhhhccceeccccccCCceEEEecccC-CCC
Confidence 113333444555567789999984 9999999975 35679999999999999986 899
Q ss_pred ceEEEEEccCCChHHHHHHHHHHHHHcCCCCCCC
Q 009709 486 PFGICFGGLKGTEPKLIEIAYAFEQATMIRRPPF 519 (528)
Q Consensus 486 PvGlQlvg~~~~D~~LL~~A~~lE~~~~~~~~p~ 519 (528)
|+||||+|++|+|+.||++|++||++++|++.+.
T Consensus 435 PvGvqlvg~~~~d~~lL~~A~~lE~~~~~~~~~~ 468 (476)
T 2gi3_A 435 PVGVQVIGRRFADGKVFRIARAIEKNSPYNENGM 468 (476)
T ss_dssp EEEEEEECCTTCHHHHHHHHHHHHHHCTTSBTTB
T ss_pred CeEEEEEcCCCCHHHHHHHHHHHHHhcCcccccC
Confidence 9999999999999999999999999999876643
No 8
>3ppm_A Fatty-acid amide hydrolase 1; protein-inhibitor complex, FAAH, oxazole, oxadiazole, endoca degradation, membrane protein; HET: JG1 1DO; 1.78A {Rattus norvegicus} PDB: 2wj2_A* 3k7f_A* 3k83_A* 3k84_A* 3lj6_A* 3lj7_A 3oj8_A* 2wj1_A* 3pr0_A* 2wap_A* 1mt5_A* 2vya_A* 3qk5_A* 3qj8_A* 3qj9_A* 3qkv_A*
Probab=100.00 E-value=2.2e-95 Score=779.81 Aligned_cols=450 Identities=18% Similarity=0.189 Sum_probs=352.0
Q ss_pred CCCCcccccccCHHHHHHHHHCCCCCHHHHHHHHHHHHHHhCCCccEEEeeCHhHHHHHHHHHHHhHHhcCCCCCCCccc
Q 009709 30 NGQDQFTIIEATIDEIQTAFDQNKLTSTQLVEFYITQIETLNPRLRSVIEVNPDARSQAEKADLARKRNQGRRFLGELHG 109 (528)
Q Consensus 30 ~~~~~~~~~~~~~~~l~~~~~~g~~t~~ev~~~~l~ri~~~~~~~na~~~~~~~a~~~A~~~d~~~~~~~~g~~~gpL~G 109 (528)
+..+.-+++++|+.+|+++|++|++|++||+++||+||++.|+.+||++++.++++++|+++| ..|||||
T Consensus 61 ~~~~~~~i~~~~~~~l~~~l~~g~~s~~ev~~a~l~ri~~~~~~~na~~~~~~~a~~~a~~~~----------~~gpL~G 130 (573)
T 3ppm_A 61 PDLDSEALLTLPLLQLVQKLQSGELSPEAVFFTYLGKAWEVNKGTNCVTSYLTDCETQLSQAP----------RQGLLYG 130 (573)
T ss_dssp TTCCHHHHHHSCHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHCCEEEECTTHHHHHHHCC----------TTCTTTT
T ss_pred CCCChhhhhhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCccCEEEEECHHHHHHHHhhh----------hcCCcCC
Confidence 444445688999999999999999999999999999999999999999999988766554432 1389999
Q ss_pred ceeeeecCcCccCCCcCCccchhhcCCCCCCChHHHHHHHHcCCeEEEecChhhhhhcccCCCCCCCCCCCCCCCCCCCC
Q 009709 110 IPVLLKDTFATKDKLNTSAGSYALVGSVVPRDATVVERLRDAGAVILGKASLTEWYSFRALGKIPNGWCARAGQAKNPYL 189 (528)
Q Consensus 110 iPi~vKD~~~~~g~~~tt~Gs~~~~~~~~~~da~~V~~L~~aGaii~GkTn~~E~a~~~~~~~~~~~~~~~~G~~~NP~~ 189 (528)
|||+|||||+++| ++||+||..+.++++.+||++|++||+||||++||||||||++ +..+.|++||+|+||||
T Consensus 131 vPi~vKD~~~~~G-~~tt~Gs~~~~~~~~~~da~vV~~L~~aGAv~~gKTn~pe~~~------~~~~~n~~~G~t~NP~~ 203 (573)
T 3ppm_A 131 VPVSLKECFSYKG-HDSTLGLSLNEGMPSESDCVVVQVLKLQGAVPFVHTNVPQSMF------SYDCSNPLFGQTMNPWK 203 (573)
T ss_dssp CEEEEETTBCCBT-CCCCTTCGGGTTCCBSSCCHHHHHHHHTTCEEEEEECCCTTSC------SSSCEETTTEECCCTTC
T ss_pred CeEEEEcccCCCC-CCcCCcChhhcCCCCCcchHHHHHHHHCCCEEEEecCCccccc------cCCCCCCCCCCcCCCCC
Confidence 9999999999996 9999999999999999999999999999999999999999998 56778999999999999
Q ss_pred CCCCCCCCChhHHHHHHhccceeecccccCCccccccccCCcceecCCCCceeCCCCCCCCCC----CcccccccCCHHH
Q 009709 190 PSGDPCGSSSGSAISVAANMVTVSLGSETHGSILCPADRNSVVGLKPTVGLTSRAGVIPVLPQ----HDTIGAISRTVSD 265 (528)
Q Consensus 190 ~~~~~GGSSgGsaaaVAag~~~~alGtDtgGSiRiPAa~~Gv~GlKPT~G~vs~~G~~p~~~~----~d~~GpmaRsv~D 265 (528)
++++|||||||||||||+|++++|+|||||||||+||+||||||||||+||||+.|++|.+++ +|++|||||||+|
T Consensus 204 ~~~~~GGSSgGsaaaVAag~~~~alGtDtgGSIRiPAa~cGv~GlKPT~Grvs~~G~~~~~~~~~~~~~~~Gp~arsv~D 283 (573)
T 3ppm_A 204 SSKSPGGSSGGEGALIGSGGSPLGLGTDIGGSIRFPSAFCGICGLKPTGNRLSKSGLKGCVYGQTAVQLSLGPMARDVES 283 (573)
T ss_dssp TTBCCCSSSHHHHHHHHTTSCSEEEEEESSSTTHHHHHHHTCEEEECCGGGSCCTTBCCSCCSCCSSCCEEEEEESSHHH
T ss_pred CCCCCCCCCchHHHHHHcCCCcEEEecCCCcchhhhhHHhCeeEEeCCCCcccCCCCCCcccccCcccccccceeCcHHH
Confidence 999999999999999999999999999999999999999999999999999999999998875 8899999999999
Q ss_pred HHHHHHHHhCCCCCCchhhhhhhhcCCCCcchhhcccCCCCCceEEEecccccCCCCCHHHHHHHHHHHHHHHHCCCEEe
Q 009709 266 AVYLLDVIVGFDSRDYEATSEAARYIPVGGYKQFLNENGLKGKRLGVVRNLFSNALNGSTVITAFENHLNTLRQSGATIV 345 (528)
Q Consensus 266 ~a~~l~~l~g~d~~d~~~~~~~~~~~p~~~~~~~~~~~~~~~lRIGv~~~~~~~~~~~~~v~~a~~~a~~~L~~~G~~vv 345 (528)
+++++++|++.|++..++.. +...|..... ...+++||||+.++++. .++|+++++++++++.|+++||+|+
T Consensus 284 ~a~~l~~l~~~d~~~~d~~~------~~~~~~~~~~-~~~~~lrigv~~~~~~~-~~~p~v~~a~~~a~~~L~~~G~~v~ 355 (573)
T 3ppm_A 284 LALCLKALLCEHLFTLDPTV------PPLPFREEVY-RSSRPLRVGYYETDNYT-MPSPAMRRALIETKQRLEAAGHTLI 355 (573)
T ss_dssp HHHHHHHHSSHHHHHHCTTS------CCCCCCHHHH-TCCCCCEEEECSCCSSS-CCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHhcccccccCCCC------Cccccchhhc-ccCCCCEEEEEcccCCC-CCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 99999999997742211111 1113544332 35689999999876554 5799999999999999999999999
Q ss_pred eccCCCchhhhcCCCCchhHHHHHHHHHHHHHHHHHhhccCCc--------------cchHHHHHHhhhchhhhhhhhcC
Q 009709 346 DDLEMANVDVISNPGKSGELTAMLAGFKIALNEYLQELVSSPV--------------RSLADVIAFNQNNADMEKTKEYG 411 (528)
Q Consensus 346 e~~~~p~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~ 411 (528)
+ +++|.+.+....+ +...+..+... .++..+..+++ ++++.++.+... .+.
T Consensus 356 ~-~~~p~~~~~~~~~---~~~~~~~dg~~---~~~~~~~~e~~~p~~~~~~~~~~lp~~l~~~~~~~~~--------~~~ 420 (573)
T 3ppm_A 356 P-FLPNNIPYALEVL---STGGLFSDGGR---SFLQNFKGDFVDPCLGDLILILRLPSWFKRLLSLLLK--------PLF 420 (573)
T ss_dssp E-CCCTTHHHHHHTH---HHHHHTTBTTH---HHHGGGTTSCCCGGGTTHHHHHTSCHHHHHHHHHHHT--------TTC
T ss_pred E-ecCccHHHHHHHH---HHHHHhhhhHH---HHHHHhccCcccHHHHHHhhhccchHHHHHHHHHHhh--------hcc
Confidence 8 7888765433110 00111111111 12222222221 112222222110 111
Q ss_pred hhHHHhhhhcCCCcHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEecCCC----------------chhhhhccCCCeEe
Q 009709 412 QGTFISAEKTSGFGEKERKAVELMEKLSQDGIEKLMTENELDALVTPGTR----------------VIPVLALGGYPGIT 475 (528)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~DvLl~Pt~~----------------~t~~~n~~G~Pais 475 (528)
+.+..........+...+..+...++.+++++.+.|+++++|+||||+.+ ||.+||++|+|+++
T Consensus 421 p~~~~~~~~~~~~s~~e~~~~~~~r~~~r~~~~~~w~~~~lDaLL~Pt~~pA~~h~~~~~~~~~~~YT~l~NLLDyPA~v 500 (573)
T 3ppm_A 421 PRLAAFLNNMRPRSAEKLWKLQHEIEMYRQSVIAQWKAMNLDVLLTPMLGPALDLNTPGRATGAVSYTMLYNCLDFPAGV 500 (573)
T ss_dssp HHHHHHHHHTSBCBHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCCSCCBTTCGGGCGGGGHHHHHHHHTTCCEEE
T ss_pred hHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHhhcCCCEeeCCCCCCCcCCccccccccccchhhhhHhhCCCeEE
Confidence 11110111112223333334444555567789999987789999999842 46789999999999
Q ss_pred eccccC-----------------------------CCCCceEEEEEccCCChHHHHHHHHHHHHHcCCCCCCC
Q 009709 476 VPAGYE-----------------------------GNQMPFGICFGGLKGTEPKLIEIAYAFEQATMIRRPPF 519 (528)
Q Consensus 476 vP~G~~-----------------------------~~GlPvGlQlvg~~~~D~~LL~~A~~lE~~~~~~~~p~ 519 (528)
||+|+. .+|+||||||||++|+|++||++|+.+|++++.++.|+
T Consensus 501 VPvg~v~~~~d~~~~~~~~~~~~~~d~~~~~~~~~~~GlPVgVQiVGrr~~EEklL~~a~~IE~~l~~~~~~~ 573 (573)
T 3ppm_A 501 VPVTTVTAEDDAQMELYKGYFGDIWDIILKKAMKNSVGLPVAVQCVALPWQEELCLRFMREVEQLMTPQKQPS 573 (573)
T ss_dssp EEEEECCHHHHHHHTTCCCSSCSHHHHHHHHHTCSCTTCEEEEEEECCTTCHHHHHHHHHHHHHHHCTTSCC-
T ss_pred EecccccccccccccccccccchhhhhhhhhhhhccCCCceEEEEeCCCCcHHHHHHHHHHHHHHHhcccCCC
Confidence 999964 37999999999999999999999999999999887663
No 9
>1o9p_A Malonamidase E2; malonate; 1.8A {Bradyrhizobium japonicum} SCOP: c.117.1.1 PDB: 1o9o_A 1obl_A 1och_A 1obk_A 1obi_A 1o9q_A* 1obj_A 1o9n_A 1ock_A 1ocl_A 1ocm_A
Probab=100.00 E-value=5e-94 Score=747.34 Aligned_cols=392 Identities=23% Similarity=0.297 Sum_probs=328.6
Q ss_pred cCHHHHHHHHHCCCCCHHHHHHHHHHHHHHhCCCccEEEeeCHh-HHHHHHHHHHHhHHhcCCCCCCCcccceeeeecCc
Q 009709 40 ATIDEIQTAFDQNKLTSTQLVEFYITQIETLNPRLRSVIEVNPD-ARSQAEKADLARKRNQGRRFLGELHGIPVLLKDTF 118 (528)
Q Consensus 40 ~~~~~l~~~~~~g~~t~~ev~~~~l~ri~~~~~~~na~~~~~~~-a~~~A~~~d~~~~~~~~g~~~gpL~GiPi~vKD~~ 118 (528)
+++.+|+++|++|++|++||+++||+||+++|+.+|||++++++ + + . ..||||||||+|||||
T Consensus 2 ~~~~~l~~~i~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~~~~a-~--------~-------~~gpL~GvPi~vKD~~ 65 (414)
T 1o9p_A 2 ISLADLQRRIETGELSPNAAIAQSHAAIEAREKEVHAFVRHDKSAR-A--------Q-------ASGPLRGIAVGIKDII 65 (414)
T ss_dssp CCHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHCCEEEECTTCC-C--------C-------SSSTTTTCEEEEETTB
T ss_pred CCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCccccEEEEeCHHHh-c--------c-------cCCCcCCCEEEEEccc
Confidence 58999999999999999999999999999999999999999988 5 2 1 2589999999999999
Q ss_pred CccCCCcCCccchhhcCCCCCCChHHHHHHHHcCCeEEEecChhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 009709 119 ATKDKLNTSAGSYALVGSVVPRDATVVERLRDAGAVILGKASLTEWYSFRALGKIPNGWCARAGQAKNPYLPSGDPCGSS 198 (528)
Q Consensus 119 ~~~g~~~tt~Gs~~~~~~~~~~da~~V~~L~~aGaii~GkTn~~E~a~~~~~~~~~~~~~~~~G~~~NP~~~~~~~GGSS 198 (528)
+++| ++||+||+.|+++++.+||++|+|||+|||||+||||||||++ .|+ |+|+||||++|+|||||
T Consensus 66 ~v~G-~~tt~Gs~~~~~~~~~~dA~~V~rL~~aGAii~GKTn~~Efa~----------~n~--G~t~NP~~~~~~pGGSS 132 (414)
T 1o9p_A 66 DTAN-MPTEMGSEIYRGWQPRSDAPVVMMLKRAGATIIGKTTTTAFAS----------RDP--TATLNPHNTGHSPGGAS 132 (414)
T ss_dssp CCSS-SCCCTTSGGGTTCCCSSCCHHHHHHHHTTCEEEEEECCCGGGS----------SCC--CSCCBTTBTTBCCCSSS
T ss_pred ccCC-cccCcCCHhhccCCCCCCHHHHHHHHHCCCEEEEecCCchhhc----------CCC--CCCCCCCCCCCCCCcch
Confidence 9996 9999999999999999999999999999999999999999996 344 99999999999999999
Q ss_pred hhHHHHHHhccceeecccccCCccccccccCCcceecCCCCceeCCCCCCCCCCCcccccccCCHHHHHHHHHHHhCCCC
Q 009709 199 SGSAISVAANMVTVSLGSETHGSILCPADRNSVVGLKPTVGLTSRAGVIPVLPQHDTIGAISRTVSDAVYLLDVIVGFDS 278 (528)
Q Consensus 199 gGsaaaVAag~~~~alGtDtgGSiRiPAa~~Gv~GlKPT~G~vs~~G~~p~~~~~d~~GpmaRsv~D~a~~l~~l~g~d~ 278 (528)
||||||||+|++++|+|||||||||+||+||||||||||+||||+.|++|+++++|++|||||||+|+++++++|.|++
T Consensus 133 gGsAaaVAag~~~~alGtDtgGSIRiPAa~cGv~GlKPT~G~vs~~G~~~~~~s~d~~Gp~arsv~D~a~~~~~l~g~~- 211 (414)
T 1o9p_A 133 SGSAAAVGAGMIPLALGTQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAMTGRS- 211 (414)
T ss_dssp HHHHHHHHTTSCSEEEEEESSSTTHHHHHHHTCEEEECSTTSSCCTTBCCSCTTTCEEEEEESSHHHHHHHHHHHHCCG-
T ss_pred HHHHHHHHcCCCceEEeeCCchhhhHhHHHhCCeeEECCCCCCCCCCCCCCCCccCeeccccCCHHHHHHHHHHhcCCC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred CCchhhhhhhhcCCCCcchhhcccCCCCCceEEEecccccCCCCCHHHHHHHHHHHHHHHHCCCEEeeccCCCch-hhhc
Q 009709 279 RDYEATSEAARYIPVGGYKQFLNENGLKGKRLGVVRNLFSNALNGSTVITAFENHLNTLRQSGATIVDDLEMANV-DVIS 357 (528)
Q Consensus 279 ~d~~~~~~~~~~~p~~~~~~~~~~~~~~~lRIGv~~~~~~~~~~~~~v~~a~~~a~~~L~~~G~~vve~~~~p~~-~~~~ 357 (528)
++ . + ....+++||||+.++++. .++|+++++++++++.|+++||+|++ +++|.. +...
T Consensus 212 -~~----~-----~---------~~~~~~lrig~~~~~~~~-~~~~~v~~a~~~a~~~L~~~G~~v~~-~~~~~~~~~~~ 270 (414)
T 1o9p_A 212 -EF----S-----G---------IVPAKAPRIGVVRQEFAG-AVEPAAEQGLQAAIKAAERAGASVQA-IDLPEAVHEAW 270 (414)
T ss_dssp -GG----S-----S---------CCCCSSCEEEECCCGGGC-CCCHHHHHHHHHHHHHHHHTTCEEEE-CCCCHHHHHHH
T ss_pred -cc----c-----c---------ccCCCCCEEEEECccccC-CCCHHHHHHHHHHHHHHHHCCCEEEE-ecCcchHHHHH
Confidence 11 0 1 023578999999887654 68999999999999999999999998 677643 2221
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHhhccCCccchHHHHHHhhhchhhhhhhhcChhHHHhhhhcCCCc-HHHHHHHHHHH
Q 009709 358 NPGKSGELTAMLAGFKIALNEYLQELVSSPVRSLADVIAFNQNNADMEKTKEYGQGTFISAEKTSGFG-EKERKAVELME 436 (528)
Q Consensus 358 ~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~~~ 436 (528)
..+..++..|....+..++... ...+.+.+..........+ .+|.++. +.+
T Consensus 271 ----~~~~~~~~~e~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~g~~~~~~~~~~a~-~~r 322 (414)
T 1o9p_A 271 ----RIHPIIQDFEAHRALAWEFSEH-----------------------HDEIAPMLRASLDATVGLTPKEYDEAR-RIG 322 (414)
T ss_dssp ----HHHHHHHHHHHHHHTHHHHHHS-----------------------GGGSCHHHHHHHHHTTTCCHHHHHHHH-HHH
T ss_pred ----HHHHHHHHHHHHHHHHHHHHhC-----------------------hhhcCHHHHHHHHhccCCCHHHHHHHH-HHH
Confidence 1123455556655554443211 0112222222222222333 3444444 445
Q ss_pred HHHHHHHHHHHhcCCCcEEEecCCC---------------chhhhhccCCCeEeeccccCCCCCceEEEEEccCCChHHH
Q 009709 437 KLSQDGIEKLMTENELDALVTPGTR---------------VIPVLALGGYPGITVPAGYEGNQMPFGICFGGLKGTEPKL 501 (528)
Q Consensus 437 ~~~~~~~~~~~~~~~~DvLl~Pt~~---------------~t~~~n~~G~PaisvP~G~~~~GlPvGlQlvg~~~~D~~L 501 (528)
+.+++.+.++|+ ++|+||+|+++ ||.++|++|+|+++||+|+.. |||+||||+|++|+|+.|
T Consensus 323 ~~~~~~~~~~~~--~~D~ll~Pt~~~~a~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~-GlPvGvqlvg~~~~d~~l 399 (414)
T 1o9p_A 323 RRGRRELGEVFE--GVDVLLTYSAPGTAPAKALASTGDPRYNRLWTLMGNPCVNVPVLKVG-GLPIGVQVIARFGNDAHA 399 (414)
T ss_dssp HHHHHHHHHHTT--TCSEEEEESSSSSCCBGGGCCCCCGGGTHHHHHHCCCEEEEEEEEET-TEEEEEEEEESTTCHHHH
T ss_pred HHHHHHHHHHHc--CCCEEEeCCCCCCCCcccccCCcccchhhhhHhcCCCeEEeeCCCCC-CCCeEEEEECCCCChHHH
Confidence 556677999997 59999999975 356899999999999999987 999999999999999999
Q ss_pred HHHHHHHHHHcC
Q 009709 502 IEIAYAFEQATM 513 (528)
Q Consensus 502 L~~A~~lE~~~~ 513 (528)
|++|++||++++
T Consensus 400 L~~a~~le~~~~ 411 (414)
T 1o9p_A 400 LATAWFLEDALA 411 (414)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 999999999864
No 10
>3a1k_A Amidase; AS family enzyme, hydrolase; 2.17A {Rhodococcus SP} PDB: 3a1i_A
Probab=100.00 E-value=3.8e-94 Score=767.58 Aligned_cols=452 Identities=24% Similarity=0.323 Sum_probs=347.4
Q ss_pred ccCHHHHHHHHHCCCCCH-HHHHHHHHHHHHHhCCCccEEE-eeCHh-HHHHHHHHHHHhHH------hcCCCCCCCccc
Q 009709 39 EATIDEIQTAFDQNKLTS-TQLVEFYITQIETLNPRLRSVI-EVNPD-ARSQAEKADLARKR------NQGRRFLGELHG 109 (528)
Q Consensus 39 ~~~~~~l~~~~~~g~~t~-~ev~~~~l~ri~~~~~~~na~~-~~~~~-a~~~A~~~d~~~~~------~~~g~~~gpL~G 109 (528)
.+++.++...|.+++++. +|+++.+++++++.++.+|+++ .+..+ + .++.+.|+...+ ..+|+..|||||
T Consensus 12 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~g~~~gpL~G 90 (521)
T 3a1k_A 12 DAAARHYGITLDKTARLEWPALIDGALGSYDVVDQLYADEATPPTTSRE-HAVPSASENPLSAWYVTTSIPPTSDGVLTG 90 (521)
T ss_dssp HHHHHHTTCCCCTTHHHHHHHHHHHHTHHHHHHHHHHHHHSCCCCCCCC-EECCCTTTCTTSCEEEEEEECCSSCCTTTT
T ss_pred HHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHhhhcccccccCchhh-hhccccccchhhhhHHHHhhcCCCCCCCCC
Confidence 456888888899999999 9999999999999887776666 55555 6 555555541000 034777899999
Q ss_pred ceeeeecCcCccCCCcCCccchhhcCCCCCCChHHHHHHHHcCCeEEEecChhhhhhcccCCCCCCCCCCCCCCCCCCCC
Q 009709 110 IPVLLKDTFATKDKLNTSAGSYALVGSVVPRDATVVERLRDAGAVILGKASLTEWYSFRALGKIPNGWCARAGQAKNPYL 189 (528)
Q Consensus 110 iPi~vKD~~~~~g~~~tt~Gs~~~~~~~~~~da~~V~~L~~aGaii~GkTn~~E~a~~~~~~~~~~~~~~~~G~~~NP~~ 189 (528)
|||+|||||+++| ++||+||+.++++++.+||++|+|||+|||||+|||||+||++ +..++|++||+|+||||
T Consensus 91 vPi~vKD~i~v~G-~~Tt~Gs~~~~~~~~~~DA~vV~rLr~AGAvilGKTn~~Efa~------~~~~~n~~~G~t~NP~~ 163 (521)
T 3a1k_A 91 RRVAIKDNVTVAG-VPMMNGSRTVEGFTPSRDATVVTRLLAAGATVAGKAVCEDLCF------SGSSFTPASGPVRNPWD 163 (521)
T ss_dssp CEEEEETTBCCTT-SCBCTTCTTTTTBCCSSCCHHHHHHHHTTCEEEEEECCCGGGC------CSSSSCCTTCCCEETTE
T ss_pred CEEEEEcCcccCC-cccCCCChhhcCCCCCCchHHHHHHHHCCCEEEEeeChhhHhh------CCCCCCCCCCCcCCCCC
Confidence 9999999999996 9999999999999999999999999999999999999999998 66789999999999999
Q ss_pred CCCCCCCCChhHHHHHHhccceeecccccCCccccccccCCcceecCCCCceeCCCCCCCCCCCcccccccCCHHHHHHH
Q 009709 190 PSGDPCGSSSGSAISVAANMVTVSLGSETHGSILCPADRNSVVGLKPTVGLTSRAGVIPVLPQHDTIGAISRTVSDAVYL 269 (528)
Q Consensus 190 ~~~~~GGSSgGsaaaVAag~~~~alGtDtgGSiRiPAa~~Gv~GlKPT~G~vs~~G~~p~~~~~d~~GpmaRsv~D~a~~ 269 (528)
++|+|||||||||||||+|++++|+|||||||||+||+||||||||||+||||+.|++|+++++|++|||||||+|++++
T Consensus 164 ~~~~pGGSSgGSAAAVAag~~~~alGtDtgGSIR~PAa~cGvvGlKPT~Grvs~~G~~p~~~sld~~Gp~aRsv~D~a~~ 243 (521)
T 3a1k_A 164 RQREAGGSSGGSAALVANGDVDFAIGGDQGGSIRIPAAFCGVVGHKPTFGLVPYTGAFPIERTIDHLGPITRTVHDAALM 243 (521)
T ss_dssp EEEECCSSSHHHHHHHHTTSSSEEEEEESSSTTHHHHHHHTSEEEECSTTTSCCTTBCCSCGGGCEEEEEESSHHHHHHH
T ss_pred CCCCCCCCCchHHHHHhcCCcceecccCCCCCCCcChHHcCCeeEecCCCcCCCCCCCCcccccCeeCceeCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCCCchhhhhhhhcCCCCcchhhcccCCCCCceEEEecccccCCCCCHHHHHHHHHHHHHHHHCCCEEeeccC
Q 009709 270 LDVIVGFDSRDYEATSEAARYIPVGGYKQFLNENGLKGKRLGVVRNLFSNALNGSTVITAFENHLNTLRQSGATIVDDLE 349 (528)
Q Consensus 270 l~~l~g~d~~d~~~~~~~~~~~p~~~~~~~~~~~~~~~lRIGv~~~~~~~~~~~~~v~~a~~~a~~~L~~~G~~vve~~~ 349 (528)
+++|+|+|+.|+.+... .|..+|.+.+. .+++++||||+.+.+....++++++++++++++.|+++||+|++ ++
T Consensus 244 l~vlag~d~~D~~~~~~----~~~~~~~~~l~-~~~~~lrIgv~~~~~~~~~~~~~v~~a~~~a~~~L~~~Ga~v~e-v~ 317 (521)
T 3a1k_A 244 LSVIAGRDGNDPRQADS----VEAGDYLSTLD-SDVDGLRIGIVREGFGHAVSQPEVDDAVRAAAHSLTEIGCTVEE-VN 317 (521)
T ss_dssp HHHHCSCCSSCTTSCTT----CCCCCSSTTTT-SCCTTCEEEEEGGGSCCSSSCHHHHHHHHHHHHGGGGGTCEEEE-EC
T ss_pred HHHHhCCCCCCcccccc----CCCcchhhhhc-cCccCcEEEEECccccccCCCHHHHHHHHHHHHHHHHCCCEEEE-eC
Confidence 99999999988654211 12224655544 35789999999876543357999999999999999999999998 78
Q ss_pred CCchhhhcCCCCchhHHHHHHHHHHHHHHHHHhhc--cCC--ccchHHHH-HHhhhchhhhhhhhcChhHHHhh---hh-
Q 009709 350 MANVDVISNPGKSGELTAMLAGFKIALNEYLQELV--SSP--VRSLADVI-AFNQNNADMEKTKEYGQGTFISA---EK- 420 (528)
Q Consensus 350 ~p~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~--~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~- 420 (528)
+|....... .+..+...+...++..+.. .. ... ...+.+.. .+... ....++..+.... ..
T Consensus 318 ~p~~~~~~~----~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~v~~~~~~g~~~ 387 (521)
T 3a1k_A 318 IPWHLHAFH----IWNVIATDGGAYQMLDGNG-YGMNAEGLYDPELMAHFASRRIQ-----HADALSETVKLVALTGHHG 387 (521)
T ss_dssp CTHHHHHHH----HHHHHHHHHHHHHTTTTTT-TCSSSCSCCCHHHHHHHHHHHHH-----SGGGSCHHHHHHHHHHHHH
T ss_pred CCchHhHHH----HHHHHHHHHHHhhhhhccc-cccchhhhhhHHHHHHHHHHhhh-----hhhhcCHHHHHHHHhchhh
Confidence 875543211 1112222222211110100 00 000 00111111 01001 1112333322111 11
Q ss_pred cCCC-cHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEecCCC-------------------------chhhhhccCCCeE
Q 009709 421 TSGF-GEKERKAVELMEKLSQDGIEKLMTENELDALVTPGTR-------------------------VIPVLALGGYPGI 474 (528)
Q Consensus 421 ~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~DvLl~Pt~~-------------------------~t~~~n~~G~Pai 474 (528)
...+ ..+|.++ ++.++.+++.++++|++ +|+||+||+| +|.++|++|+|+|
T Consensus 388 ~~~~~~~~~~~a-~~~r~~~~~~~~~~~~~--~Dvll~Pt~p~~a~~~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~Pai 464 (521)
T 3a1k_A 388 ITTLGGASYGKA-RNLVPLARAAYDTALRQ--FDVLVMPTLPYVASELPAKDVDRATFITKALGMIANTAPFDVTGHPSL 464 (521)
T ss_dssp HTTTTTHHHHHH-HHHHHHHHHHHHHHHHH--CSEEEEESCSSCCCBCCCTTCCHHHHHHHHHTTCTTTHHHHHHCCCEE
T ss_pred hccCCHHHHHHH-HHHHHHHHHHHHHHhcC--CCEEEECCCCCCCcccccccCchhhHHHHHHhhhcccccchhcCCCcE
Confidence 1122 2344444 45556667789999984 9999999975 2567899999999
Q ss_pred eeccccCCCCCceEEEEEccCCChHHHHHHHHHHHH-HcCCCCCC
Q 009709 475 TVPAGYEGNQMPFGICFGGLKGTEPKLIEIAYAFEQ-ATMIRRPP 518 (528)
Q Consensus 475 svP~G~~~~GlPvGlQlvg~~~~D~~LL~~A~~lE~-~~~~~~~p 518 (528)
+||+|+ .+|||+||||+|++|+|++||++|++||+ ..+|+.++
T Consensus 465 svP~g~-~~GlPvGlQlvg~~~~d~~LL~~A~~~E~~~~~~~~~~ 508 (521)
T 3a1k_A 465 SVPAGL-VNGLPVGMMITGRHFDDATVLRVGRAFEKLRGAFPTPA 508 (521)
T ss_dssp EEEEEE-ETTEEEEEEEECSTTCHHHHHHHHHHHHHHHCCCCCTT
T ss_pred Eeeccc-CCCCCeeEEEEcCCCCHHHHHHHHHHHHHhhcccCCcc
Confidence 999999 69999999999999999999999999999 77776643
No 11
>3shg_B VBHA; ampylation, adenylylation, toxin-antitoxin complex, FIC fold transfer, transferase-protein binding complex; HET: TLA; 1.50A {Bartonella schoenbuchensis R1}
Probab=50.65 E-value=19 Score=25.41 Aligned_cols=28 Identities=7% Similarity=0.147 Sum_probs=24.1
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q 009709 42 IDEIQTAFDQNKLTSTQLVEFYITQIET 69 (528)
Q Consensus 42 ~~~l~~~~~~g~~t~~ev~~~~l~ri~~ 69 (528)
+.+..+.+..|++|..++++.+..||.+
T Consensus 32 ~l~~~erwv~GEis~~e~i~~~~~r~~~ 59 (61)
T 3shg_B 32 VVAQMERVVVGELETSDVIKDLMERIKR 59 (61)
T ss_dssp HHHHHHHHHHTSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHc
Confidence 3456778889999999999999999975
No 12
>1nrp_R Receptor based peptide NR'S; serine proteinase/receptor; 3.00A {Homo sapiens} PDB: 1nrn_R 1nrq_R*
Probab=44.67 E-value=6.8 Score=21.72 Aligned_cols=10 Identities=50% Similarity=1.009 Sum_probs=7.9
Q ss_pred CCCCCCccCC
Q 009709 519 FVTPFWIDER 528 (528)
Q Consensus 519 ~~~p~~~~~~ 528 (528)
.+.|||+|+.
T Consensus 14 kyepfwedee 23 (26)
T 1nrp_R 14 KYEPFWEDEE 23 (26)
T ss_pred ccCccccccc
Confidence 4799999873
No 13
>1nro_R Receptor based peptide NRP; serine proteinase/receptor; 3.10A {Homo sapiens}
Probab=40.11 E-value=8 Score=21.63 Aligned_cols=9 Identities=56% Similarity=1.106 Sum_probs=7.4
Q ss_pred CCCCCCccC
Q 009709 519 FVTPFWIDE 527 (528)
Q Consensus 519 ~~~p~~~~~ 527 (528)
.+.|||+|+
T Consensus 14 kyepfwede 22 (27)
T 1nro_R 14 KYEPFWEDE 22 (27)
T ss_pred ccCccccch
Confidence 478999986
No 14
>1zrj_A E1B-55KDA-associated protein 5 isoform C; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=36.97 E-value=21 Score=24.33 Aligned_cols=40 Identities=10% Similarity=0.267 Sum_probs=31.3
Q ss_pred CCCcccccccCHHHHHHHHHCCCCCHHHHHHHHHHHHHHh
Q 009709 31 GQDQFTIIEATIDEIQTAFDQNKLTSTQLVEFYITQIETL 70 (528)
Q Consensus 31 ~~~~~~~~~~~~~~l~~~~~~g~~t~~ev~~~~l~ri~~~ 70 (528)
..+..++..+++.||.+.++.+-++..-.-...++|+..+
T Consensus 4 ~~s~~~~~klkV~eLK~eLk~RgL~~~G~Ka~Li~RL~~~ 43 (50)
T 1zrj_A 4 GSSGMDVRRLKVNELREELQRRGLDTRGLKAELAERLQAA 43 (50)
T ss_dssp SSCCCCGGGSCHHHHHHHHHHTTCCCCSCHHHHHHHHHHH
T ss_pred ccCcCCHHHCcHHHHHHHHHHcCCCCCCcHHHHHHHHHHH
Confidence 4556789999999999999998888765556666777655
No 15
>2do1_A Nuclear protein HCC-1; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=25.45 E-value=29 Score=24.19 Aligned_cols=39 Identities=8% Similarity=0.157 Sum_probs=28.0
Q ss_pred CCcccccccCHHHHHHHHHCCCCCHHHHHHHHHHHHHHh
Q 009709 32 QDQFTIIEATIDEIQTAFDQNKLTSTQLVEFYITQIETL 70 (528)
Q Consensus 32 ~~~~~~~~~~~~~l~~~~~~g~~t~~ev~~~~l~ri~~~ 70 (528)
....++..+++.||.+.++...++..-.-..+++|+..+
T Consensus 5 ~~~~~l~klkV~eLK~~L~~rGL~~~G~KaeLieRL~~~ 43 (55)
T 2do1_A 5 SSGVELHKLKLAELKQECLARGLETKGIKQDLIHRLQAY 43 (55)
T ss_dssp CCCCCTTTSCHHHHHHHHHHHTCCCCSCHHHHHHHHHHH
T ss_pred ccccCHHHCcHHHHHHHHHHcCCCCCCcHHHHHHHHHHH
Confidence 345678899999999999988787644444555666543
Done!