RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 009709
(528 letters)
>gnl|CDD|180715 PRK06828, PRK06828, amidase; Provisional.
Length = 491
Score = 402 bits (1034), Expect = e-136
Identities = 198/491 (40%), Positives = 276/491 (56%), Gaps = 25/491 (5%)
Query: 39 EATIDEIQTAFDQNKLTSTQLVEFYITQIETLN---PRLRSVIEVNPDARSQAEKADLAR 95
E TI +IQTA + KLTS +LV +Y+ +I + P++ S++E+NPDA AE D R
Sbjct: 12 ELTIHDIQTAMEDGKLTSKELVMYYLHRIAKYDQDGPKINSILEINPDAIFIAEALDHER 71
Query: 96 KRNQGRRFLGELHGIPVLLKDTFATKDKLNTSAGSYALVGSVVPRDATVVERLRDAGAVI 155
K R G LHGIPVLLKD T D ++TSAG+ AL + DA +V +LR+AGAVI
Sbjct: 72 KIKGVR---GPLHGIPVLLKDNIETNDSMHTSAGTIALEQHISSEDAFLVTKLREAGAVI 128
Query: 156 LGKASLTEWYSFRALGKIPNGWCARAGQAKNPYLPSGD---PCGSSSGSAISVAANMVTV 212
LGKA++TE +F + ++ G+ AR GQ NPY D GSS+GSAI+VAAN V
Sbjct: 129 LGKANMTELANFMSF-EMWAGYSARGGQTINPYGTGEDDMFVGGSSTGSAIAVAANFTVV 187
Query: 213 SLGSETHGSILCPADRNSVVGLKPTVGLTSRAGVIPVLPQHDTIGAISRTVSDAVYLLDV 272
S+G+ET GSIL PA +NSVVG+KPTVGL SR G+IP DT G +RTV+DA LL
Sbjct: 188 SVGTETDGSILSPAVQNSVVGIKPTVGLISRRGIIPFTYSQDTAGPFARTVTDAAILLGS 247
Query: 273 IVGFDSRDYEATSEAARYIPVGGYKQFLNENGLKGKRLGVVRNLFSNAL-NGSTVITAFE 331
+ G D +D T ++ Y ++L+ NGL G ++GV N +G F+
Sbjct: 248 LTGVDEKD-VVTHKSEGIAE-HDYTKYLDANGLNGAKIGVYNNAPKEYYESGEYDEKLFK 305
Query: 332 NHLNTLRQSGATIVDDLEMANVDVISNPGKSGELTAMLAGFKIALNEYLQELVSS-PVRS 390
+ LR GAT+V+D+ I + + +L K +L+ YL +L S+ PV S
Sbjct: 306 ETIEVLRSEGATVVEDI------DIPSFHREWSWGVLLYELKHSLDNYLSKLPSTIPVHS 359
Query: 391 LADVIAFNQNNADMEKTKEYGQGTFISAEKTSG-FGEKE-RKAVELMEKLSQD-GIEKLM 447
+++++ FN+N A E+ +YGQ + E A SQ+ GI+ +
Sbjct: 360 ISELMEFNENIA--ERALKYGQTKLERRKDFPNTLRNPEYLNARLEDIYFSQEQGIDFAL 417
Query: 448 TENELDALVTPGTRVIPVLALGGYPGITVPAGYEGNQMPFGICFGGLKGTEPKLIEIAYA 507
+ LDA++ P + A GYP I +PAGY PFGI +E LI++AYA
Sbjct: 418 EKYNLDAILFPSYIGSTICAKAGYPSIAIPAGYMEGGRPFGITLASTAFSEGTLIKLAYA 477
Query: 508 FEQATMIRRPP 518
FEQAT R+ P
Sbjct: 478 FEQATKHRKIP 488
>gnl|CDD|236161 PRK08137, PRK08137, amidase; Provisional.
Length = 497
Score = 397 bits (1022), Expect = e-134
Identities = 203/508 (39%), Positives = 276/508 (54%), Gaps = 43/508 (8%)
Query: 35 FTIIEATIDEIQTAFDQNKLTSTQLVEFYITQIETL---NPRLRSVIEVNPDARSQAEKA 91
T +E +Q A ++QL Y+ +I + PRL +VIE+NPDA + A
Sbjct: 1 QTALEERAGALQAAMPAGAAPASQLTRAYLQRIARIDRDGPRLNAVIELNPDAEADAAAL 60
Query: 92 DLARKRNQGRRFLGELHGIPVLLKDTFATKDKLNTSAGSYALVGSVVPRDATVVERLRDA 151
D RK + R G LHGIPVLLKD D + T+AGS AL G+ RDA +V RLRDA
Sbjct: 61 DAERKAGKVR---GPLHGIPVLLKDNIDAADPMPTTAGSLALAGNRPTRDAFLVARLRDA 117
Query: 152 GAVILGKASLTEWYSFRALGKIPNGWCARAGQAKNPYLPSGDPCGSSSGSAISVAANMVT 211
GAVILGKA+L+EW +FR+ +GW AR G +NPY PCGSSSGS +VAA +
Sbjct: 118 GAVILGKANLSEWANFRSTRSS-SGWSARGGLTRNPYALDRSPCGSSSGSGAAVAAGLAA 176
Query: 212 VSLGSETHGSILCPADRNSVVGLKPTVGLTSRAGVIPVLPQHDTIGAISRTVSDAVYLLD 271
V++G+ET GSI CPA N +VGLKPTVGL SR G++P+ DT G ++RTV+DA +L
Sbjct: 177 VAIGTETDGSITCPAAINGLVGLKPTVGLVSRDGIVPISHSQDTAGPMTRTVADAAAVLT 236
Query: 272 VIVGFDSRDYEATSEAARYIPVGGYKQFLNENGLKGKRLGVVRNLF--SNALNGSTVITA 329
I G D D AT+ A P Y L+ + L+G RLGV RN ++
Sbjct: 237 AIAGGDPAD-PATASAPA--PAVDYVAALDADALRGARLGVARNYLGYHPEVD-----AQ 288
Query: 330 FENHLNTLRQSGATIVDDLEMANVDVISNPGKSGELTAMLAGFKIALNEYLQE-LVSSPV 388
FE L L+ +GA ++D VD+ E +L FK LN YL+ +PV
Sbjct: 289 FERALAELKAAGAVVID-----VVDLDDGDWGEAEKVVLLHEFKAGLNAYLRSTAPHAPV 343
Query: 389 RSLADVIAFNQNNADMEKTKEYGQGTFISAEKTSGFGEKE-RKAVELMEKLS-QDGIEKL 446
R+LAD+IAFN+ E +GQ F A+ G + A+ ++L+ +GI+
Sbjct: 344 RTLADLIAFNRAQHARE-MPYFGQELFEQAQAAPGLDDPAYLDALADAKRLAGPEGIDAA 402
Query: 447 MTENELDALVTPGT----RVIPVL------------ALGGYPGITVPAGYEGNQMPFGIC 490
+ E+ LDALV P T + + A+ GYP +TVP G +P G+
Sbjct: 403 LKEHRLDALVAPTTGPAWLIDLINGDSFGGSSSTPAAVAGYPHLTVPMGQVQG-LPVGLS 461
Query: 491 FGGLKGTEPKLIEIAYAFEQATMIRRPP 518
F G +E +L+E+ YA+EQAT RR P
Sbjct: 462 FIGAAWSEARLLELGYAYEQATHARREP 489
>gnl|CDD|235855 PRK06707, PRK06707, amidase; Provisional.
Length = 536
Score = 332 bits (852), Expect = e-108
Identities = 173/486 (35%), Positives = 280/486 (57%), Gaps = 23/486 (4%)
Query: 37 IIEATIDEIQTAFDQNKLTSTQLVEFYITQIET--LNPR-LRSVIEVNPDARSQAEKADL 93
++ AT+DE+Q D KL+ +L Y+ +I+ N L SV E+NP+A +A K D
Sbjct: 68 VVNATVDELQKMIDDGKLSYEELTSIYLFRIQEHDQNGITLNSVTEINPNAMEEARKLDQ 127
Query: 94 ARKRNQGRRFLGELHGIPVLLKDTFATKDKLNTSAGSYALVGSVVPRDATVVERLRDAGA 153
R RN+ L+GIPV++KD T + TSAG+Y L + +DAT+V++L++ GA
Sbjct: 128 ERSRNKKS----NLYGIPVVVKDNVQTAKVMPTSAGTYVLKDWIADQDATIVKQLKEEGA 183
Query: 154 VILGKASLTEWYSFRALGKIPNGWCARAGQAKNPYLP-SGDPCGSSSGSAISVAANMVTV 212
+LGKA+++EW ++ + +P+G+ + GQ NPY P D GSSSGSA VAA+ +
Sbjct: 184 FVLGKANMSEWANYLSF-TMPSGYSGKKGQNLNPYGPIKFDTSGSSSGSATVVAADFAPL 242
Query: 213 SLGSETHGSILCPADRNSVVGLKPTVGLTSRAGVIPVLPQHDTIGAISRTVSDAVYLLDV 272
++G+ET GSI+ PA + SVVGL+P++G+ SR G+IP+ DT G ++RTV DA L +
Sbjct: 243 AVGTETTGSIVAPAAQQSVVGLRPSLGMVSRTGIIPLAETLDTAGPMARTVKDAATLFNA 302
Query: 273 IVGFDSRDYEATSEAARYIPVGGYKQFLNENGLKGKRLGVVRNLFSNALNGSTVITAFEN 332
++G+D +D +E + Y + L+ +GLKGK++G+ LFS E
Sbjct: 303 MIGYDEKD--VMTEKVKDKERIDYTKDLSIDGLKGKKIGL---LFSVDQQDENRKAVAEK 357
Query: 333 HLNTLRQSGATIVDDLEMANVDVISNPGKSGELTAMLAGFKIALNEYLQELVSSPVRSLA 392
L+ +GA + D +++ N V + E FK +N+Y + + PV+SL
Sbjct: 358 IRKDLQDAGAILTDYIQLNNGGVDNLQTLEYE-------FKHNVNDYFSQQKNVPVKSLE 410
Query: 393 DVIAFNQNNADMEKTKEYGQGTFISAEKTSGFGEKERKAVELMEKLSQDGIEKLMTENEL 452
++IAFN+ D ++ +YGQ ++EK++ ++ K V+ ++ ++ +++ + E L
Sbjct: 411 EIIAFNKK--DSKRRIKYGQTLIEASEKSAITKDEFEKVVQTSQENAKKELDRYLVEKGL 468
Query: 453 DALVTPGTRVIPVLALGGYPGITVPAGYEGNQMPFGICFGGLKGTEPKLIEIAYAFEQAT 512
DALV + + A+ GYP + VPAGY+ N P G F G + E +L I YA+EQ +
Sbjct: 469 DALVMINNEEVLLSAVAGYPELAVPAGYDNNGEPVGAVFVGKQFGEKELFNIGYAYEQQS 528
Query: 513 MIRRPP 518
R+PP
Sbjct: 529 KNRKPP 534
>gnl|CDD|223232 COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit
and related amidases [Translation, ribosomal structure
and biogenesis].
Length = 475
Score = 293 bits (751), Expect = 1e-93
Identities = 164/507 (32%), Positives = 227/507 (44%), Gaps = 60/507 (11%)
Query: 36 TIIEATIDEIQTAFDQNKLTSTQLVEFYITQIETLNPRLRSVIEVNPDARSQAEKADLAR 95
+ E T E+ +L++ +LVE Y+ +IE LNP L + + V+P+A +A A
Sbjct: 3 ALTELTAAELAALLRAKELSAVELVEAYLARIEALNPDLNAFVAVDPEAALALAEAAAAD 62
Query: 96 KRNQGRRFLGELHGIPVLLKDTFATKDKLNTSAGSYALVGSVVPRDATVVERLRDAGAVI 155
R LG L G+P+ +KD T L T+AGS AL V P DATVVERLR AGAVI
Sbjct: 63 ARLAAGEPLGPLAGVPIAVKDNIDTAG-LPTTAGSKALEDYVPPYDATVVERLRAAGAVI 121
Query: 156 LGKASLTEWYSFRALGKIPNGWCARAGQAKNPYLPSGDPCGSSSGSAISVAANMVTVSLG 215
LGK ++ E+ A+G + + G +NP+ P GSS GSA +VAA +V ++LG
Sbjct: 122 LGKTNMDEF----AMG--SSTENSAFGPTRNPWNLERVPGGSSGGSAAAVAAGLVPLALG 175
Query: 216 SETHGSILCPADRNSVVGLKPTVGLTSRAGVIPVLPQHDTIGAISRTVSDAVYLLDVIVG 275
S+T GSI PA +VGLKPT G SR GV+P+ D IG ++RTV DA LLDVI G
Sbjct: 176 SDTGGSIRIPAAFCGLVGLKPTYGRVSRYGVVPLASSLDQIGPLARTVRDAALLLDVIAG 235
Query: 276 FDSRDYEATSEAARYIPVGGYKQFLNENGLKGKRLGVVRNLFSNALNGSTVITAFENHLN 335
D RD S PV L LKG R+GV + L V AFE +
Sbjct: 236 PDPRD----SPLPPPPPVPPA---LAGKDLKGLRIGVPKELGGGGPLDPDVRAAFEAAVK 288
Query: 336 TLRQSGATIVDDLEMANVDVISNPGKSGELTAMLAGFKIALNEYLQELVSSPVRSLADVI 395
L +GA +V+ D + A + Y + +V
Sbjct: 289 ALEAAGAEVVEVSLPLLSDDYALAAYYLARFDGERYGLRAADLYGKTRAE---GFGPEVK 345
Query: 396 AFNQNNADMEKTKEYGQGTFISAEKTSGFGEKERKAVELMEKLSQDGIEKLMTENELDAL 455
GT++ + + R+A + L + +KL E+D L
Sbjct: 346 RRIML------------GTYLLSA--GYYDAYYRRA---QKTLIRRAFDKLFE--EVDVL 386
Query: 456 VTPGTRVIPVLA------------------------LGGYPGITVPAGYEGNQMPFGICF 491
+TP T L G P I+VPAG+ + +P G+
Sbjct: 387 LTPTTPTPAPKIGESESDGDDPLEMYLLDVFTVPANLAGLPAISVPAGFTADGLPVGLQL 446
Query: 492 GGLKGTEPKLIEIAYAFEQATMIRRPP 518
G + L+ +A A EQA R P
Sbjct: 447 IGPAFDDATLLRLAAALEQALGWHRRP 473
>gnl|CDD|216494 pfam01425, Amidase, Amidase.
Length = 431
Score = 244 bits (624), Expect = 3e-75
Identities = 154/476 (32%), Positives = 217/476 (45%), Gaps = 78/476 (16%)
Query: 59 LVEFYITQIETLNPRLRSVIEV-NPDARSQAEKADLARKRNQGRRFLGELHGIPVLLKDT 117
LVE Y+ + E NP+L + + V +A +QA+ AD R R + G LHG+P+ LKD
Sbjct: 2 LVEAYLDRAEAANPKLNAFVTVFFEEALAQAKAADKRRARKEK----GPLHGVPISLKDN 57
Query: 118 FATKDKLNTSAGSYALVGSVVPRDATVVERLRDAGAVILGKASLTEWYSFRALGKI--PN 175
K + T+AGS AL G P DATVVERLR AGAVILGK ++ E+ A+G +
Sbjct: 58 IDVKG-VPTTAGSKALEGYPPPYDATVVERLRAAGAVILGKTNMDEF----AMGSTTENS 112
Query: 176 GWCARAGQAKNPYLPSGDPCGSSSGSAISVAANMVTVSLGSETHGSILCPADRNSVVGLK 235
+ G +NP+ S P GSS GSA +VAA +V +++G++T GSI PA +VGLK
Sbjct: 113 AF----GPTRNPWDLSRTPGGSSGGSAAAVAAGLVPLAIGTDTGGSIRIPAAFCGLVGLK 168
Query: 236 PTVGLTSRAGVIPVLPQHDTIGAISRTVSDAVYLLDVIVGFDSRDYEATSEAARYIPVGG 295
PT G SR GV+P D +G ++RTV DA LLDVI G+D D + PV
Sbjct: 169 PTYGRVSRYGVVPYSSSLDHVGPLARTVEDAALLLDVIAGYDPADPT-----SAPSPVPD 223
Query: 296 YKQFLNENGLKGKRLGVVRNLFSNALNGSTVITAFENHLNTLRQSGATIVDDLEMANVDV 355
+ + L + LKG R+GV R F +L V A L G +V+ V+
Sbjct: 224 FAEPL-KKSLKGLRIGVPREDFYFSL-DPEVQRAVRKAAAALEALGHEVVE------VEP 275
Query: 356 ISNPGKSGELTAMLAGFKIALNEYLQELVSSPVRSLADVIAFNQNNADMEKTKE----YG 411
S K AL Y + +L+D+ D E
Sbjct: 276 PS--------------LKHALPLYYIIAPAEASSNLSDLDELYPRIRDELLGDEVKRRIE 321
Query: 412 QGTFISAEKTSGFGEKERKAVELMEKLSQDGIEKLMTENELDALVTPGTR---------- 461
G + + G KA ++ L + L ELD L++P T
Sbjct: 322 LGAYALSAGY--SGAYYLKAQKVRRLL-RREFAGLF--EELDVLLSPTTPTPAPRLGEAA 376
Query: 462 ---------------VIPVLALGGYPGITVPAGYEGNQMPFGICFGGLKGTEPKLI 502
+P L G P I++PAG+ + +P G+ G G + L+
Sbjct: 377 DSPTVLYNLLDFTANTVPA-NLAGLPAISLPAGFSEDGLPVGLQIIGPPGDDETLL 431
>gnl|CDD|183377 PRK11910, PRK11910, amidase; Provisional.
Length = 615
Score = 231 bits (589), Expect = 2e-68
Identities = 156/492 (31%), Positives = 269/492 (54%), Gaps = 45/492 (9%)
Query: 37 IIEATIDEIQTAFDQNKLTSTQLVEFYITQIETLNPR---LRSVIEVNPDARSQAEKADL 93
II A + ++Q +L+ +L Y+ +I+ + L ++ E+NP ++AE+ D
Sbjct: 162 IIGADVTKLQQLIATKQLSYKELAGIYLNRIKKYDQNGLNLNAITEINPTIIAEAEQLDK 221
Query: 94 ARKRNQGRRFLGELHGIPVLLKDTFATKDKLNTSAGSYALVGSVVPRDATVVERLRDAGA 153
N+ L+G+PVLLKD TK+ L TSAG+ AL V+ +DAT+VE L+ GA
Sbjct: 222 ENTTNKS-----ALYGMPVLLKDNIGTKE-LPTSAGTVALKDWVIGKDATIVENLKANGA 275
Query: 154 VILGKASLTEWYSFRALGKIPNGWCARAGQAKNPYLPSGDPCGSSSGSAISVAANMVTVS 213
+ILGK +++EW + +PNG+ + GQ+KNPY + DP GSSSGSA + ++ ++
Sbjct: 276 LILGKTNMSEWAAGMDED-LPNGYSGKKGQSKNPYSSNLDPSGSSSGSATAATSDFAAIA 334
Query: 214 LGSETHGSILCPADRNSVVGLKPTVGLTSRAGVIPVLPQHDTIGAISRTVSDAVYLLDVI 273
+G+ET+GSI+ PA S VG KP+ GL + G+IP+ + DT G ++RTV+DA + +
Sbjct: 335 IGTETNGSIITPASAQSAVGYKPSQGLVNNKGIIPLSSRFDTPGPLTRTVNDAYLTTNAL 394
Query: 274 VGFDSRDYEATSEAARYIPVGGYKQFLNENGLKGKRLGVVRNLFSNALNGSTVITAFENH 333
TS L+ + LKGKR+G++ + SN + VI +
Sbjct: 395 T-------NTTSNPP-----------LSTDALKGKRIGLLADGESN--EETAVIKKIKLD 434
Query: 334 LNTLRQSGATIVDDLEMANVDVISNPGKSGELTAMLAGFKIALNEYLQELVSSPVRSLAD 393
L +GATI++ + + + + + + A FK LN++LQ + SP+ +L
Sbjct: 435 LQK---AGATIIEGIAVGEFEQK----DTDYASLLNADFKHDLNQFLQ-VNHSPMSTLES 486
Query: 394 VIAFNQNNADMEKTKEYGQGTFISAEKTSGFGEKERKAVELMEKLSQDGIEKLMTENELD 453
+I FNQ N + +YGQ + +++++ ++ + + SQ+ ++ ++ +++LD
Sbjct: 487 IIQFNQTNP--TRNMKYGQSELVKSQQSTITKQQADNLASNLIQSSQNELDSVLQKDKLD 544
Query: 454 ALVTPGT--RVIPVLALGGYPGITVPAGY--EGNQMPFGICFGGLKGTEPKLIEIAYAFE 509
A+VT G V+ + + G P +T+PAGY E NQ P + F + ++ L+ + YA+E
Sbjct: 545 AVVTIGMGGSVMFLAPIAGNPELTIPAGYDEESNQ-PISLTFITARNSDKILLNMGYAYE 603
Query: 510 QATMIRRPPFVT 521
Q + R+ P +
Sbjct: 604 QQSKNRKSPNLK 615
>gnl|CDD|234572 PRK00012, gatA, aspartyl/glutamyl-tRNA amidotransferase subunit A;
Reviewed.
Length = 459
Score = 226 bits (578), Expect = 4e-68
Identities = 116/303 (38%), Positives = 158/303 (52%), Gaps = 35/303 (11%)
Query: 53 KLTSTQLVEFYITQIETLNPRLRSVIEVNPD-ARSQAEKADLARKRNQGRRFLGELHGIP 111
++++ +L + Y+ +IE ++P+L + I V + A +QA+ AD + G L GIP
Sbjct: 5 EISAVELTQAYLDRIEEVDPKLNAFITVTEEEALAQAKAADAKLAAGE----AGPLAGIP 60
Query: 112 VLLKDTFATKDKLNTSAGSYALVGSVVPRDATVVERLRDAGAVILGKA--------SLTE 163
+ +KD TK + T+ S L V P DATVVE+L+ AGAVILGK S TE
Sbjct: 61 IAIKDNICTKG-IRTTCASKILENYVPPYDATVVEKLKAAGAVILGKTNMDEFAMGSSTE 119
Query: 164 WYSFRALGKIPNGWCARAGQAKNPYLPSGDPCGSSSGSAISVAANMVTVSLGSETHGSIL 223
S A G KNP+ P GSS GSA +VAA + +LGS+T GSI
Sbjct: 120 -NS--AFGPT-----------KNPWDLERVPGGSSGGSAAAVAAGLAPAALGSDTGGSIR 165
Query: 224 CPADRNSVVGLKPTVGLTSRAGVIPVLPQHDTIGAISRTVSDAVYLLDVIVGFDSRDYEA 283
PA VVGLKPT G SR G+I D IG +RTV DA LL+ I G D +D +
Sbjct: 166 QPAAFCGVVGLKPTYGRVSRYGLIAFASSLDQIGPFARTVEDAALLLNAIAGHDPKD--S 223
Query: 284 TSEAARYIPVGGYKQFLNENGLKGKRLGVVRNLFSNALNGSTVITAFENHLNTLRQSGAT 343
TS +PV Y L ++ +KG ++GV + F L+ V A E + L GA
Sbjct: 224 TS---ADVPVPDYTAALGKD-IKGLKIGVPKEYFGEGLD-PEVKEAVEAAIKKLEDLGAE 278
Query: 344 IVD 346
IV+
Sbjct: 279 IVE 281
Score = 39.3 bits (93), Expect = 0.004
Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 468 LGGYPGITVPAGYEGNQMPFGICFGGLKGTEPKLIEIAYAFE 509
L G P I+VPAG++ +P G+ G E L+ +AYAFE
Sbjct: 418 LAGLPAISVPAGFDDGGLPVGLQLIGKYFDEETLLNVAYAFE 459
>gnl|CDD|232842 TIGR00132, gatA, aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase,
A subunit. In many species, Gln--tRNA ligase is
missing. tRNA(Gln) is misacylated with Glu after which a
heterotrimeric amidotransferase converts Glu to Gln.
This model represents the amidase chain of that
heterotrimer, encoded by the gatA gene. In the Archaea,
Asn--tRNA ligase is also missing. This amidase subunit
may also function in the conversion of Asp-tRNA(Asn) to
Asn-tRNA(Asn), presumably with a different recognition
unit to replace gatB. Both Methanococcus jannaschii and
Methanobacterium thermoautotrophicum have both authentic
gatB and a gatB-related gene, but only one gene like
gatA. It has been shown that gatA can be expressed only
when gatC is also expressed. In most species expressing
the amidotransferase, the gatC ortholog is about 90
residues in length, but in Mycoplasma genitalium and
Mycoplasma pneumoniae the gatC equivalent is as the
C-terminal domain of a much longer protein. Not
surprisingly, the Mycoplasmas also represent the most
atypical lineage of gatA orthology. This orthology group
is more narrowly defined here than in Proc Natl Acad Aci
USA 94, 11819-11826 (1997). In particular, a Rhodococcus
homolog found in association with nitrile hydratase
genes and described as an enantiomer-selective amidase
active on several 2-aryl propionamides, is excluded
here. It is likely, however, that the amidase subunit
GatA is not exclusively a part of the Glu-tRNA(Gln)
amidotransferase heterotrimer and restricted to that
function in all species [Protein synthesis, tRNA
aminoacylation].
Length = 460
Score = 217 bits (556), Expect = 6e-65
Identities = 150/506 (29%), Positives = 227/506 (44%), Gaps = 85/506 (16%)
Query: 45 IQTAFDQNKLTSTQLVEFYITQIETLNPRLRSVIEVNPD-ARSQAEKADLARKRNQGRRF 103
++ + +++ +++E + +IE ++ + +EV + A QA+K D +
Sbjct: 1 LRQLLKKKEISIKEVLEASLDRIEANKDKINAFLEVTVEKALKQAKKLD--------KAI 52
Query: 104 LGELHGIPVLLKDTFATKDKLNTSAGSYALVGSVVPRDATVVERLRDAGAVILGKASLTE 163
L L GIP+ +KD +TK T+ S L + P DATV+ERL+ AGA+I+GK ++ E
Sbjct: 53 LTPLAGIPIAVKDNISTKGI-VTTCASKILENYIPPYDATVIERLKQAGALIIGKTNMDE 111
Query: 164 WYSFRALGKIPNGWCARAGQAKNPYLPSGDPCGSSSGSAISVAANMVTVSLGSETHGSIL 223
+ A+G + + G KNP+ P GSS GSA +VAA++ SLGS+T GSI
Sbjct: 112 F----AMGS--STETSAFGPTKNPWNLDRVPGGSSGGSAAAVAADLAPFSLGSDTGGSIR 165
Query: 224 CPADRNSVVGLKPTVGLTSRAGVIPVLPQHDTIGAISRTVSDAVYLLDVIVGFDSRDYEA 283
PA VVG KPT G SR G++ D IG +RTV D LLDVI G D RD
Sbjct: 166 QPASFCGVVGFKPTYGRVSRYGLVAYASSLDQIGPFARTVEDIALLLDVISGHDKRD--- 222
Query: 284 TSEAARYIPVGGYKQFLNEN--GLKGKRLGVVRNLFSNALNGSTVITAFENHLNTLRQSG 341
++ A P +F E LKG ++GVV+ V FEN L L + G
Sbjct: 223 STSAKVPDP-----EFFEELKKDLKGLKVGVVKEFSEEM--DKEVQEKFENALEVLEELG 275
Query: 342 ATIVDDLEMANVDVI-------------SNPGKSGELTAMLAGFKIALNEYLQELVSSPV 388
A IV ++ +V SN + + G++I
Sbjct: 276 AEIV-EVSFPHVKYALPIYYIISPSEASSNLAR---YDGIRYGYRI-----------EEP 320
Query: 389 RSLADVIAFNQNNADMEKTK-EYGQGTFISAEKTSG-FGEKERKAVELMEKLSQDGIEKL 446
SL ++ A + E+ K G + + + K +K L+ D KL
Sbjct: 321 NSLKELYAKTRAEGFGEEVKRRIMLGNYALSAGYYDKYYLKAQKVRTLI----IDDFLKL 376
Query: 447 MTENELDALVTPGTRVIP--------------------VLA-LGGYPGITVPAGYEGNQM 485
E+D +V+P +P V A L G P I+VP G + +
Sbjct: 377 FE--EVDVIVSPTAPTLPFKIGEKLDDPLEMYLSDILTVPANLAGLPAISVPCGVKEKGL 434
Query: 486 PFGICFGGLKGTEPKLIEIAYAFEQA 511
P G+ G + L++++YAFEQA
Sbjct: 435 PIGLQIIGKCFDDKTLLQVSYAFEQA 460
>gnl|CDD|236030 PRK07488, PRK07488, indole acetimide hydrolase; Validated.
Length = 472
Score = 202 bits (515), Expect = 6e-59
Identities = 147/513 (28%), Positives = 225/513 (43%), Gaps = 82/513 (15%)
Query: 39 EATIDEIQTAFDQNKLTSTQLVEFYITQIETLNPRLRSVIEVNPD-ARSQAEKADLARKR 97
++ E A +L+ +LVE + + L L + V+ + A + A + D +R
Sbjct: 10 SLSLTEAAAALRSGRLSCLELVEALLARAAAL-APLNAFTTVDAEGALAAARRID--AQR 66
Query: 98 NQGRRFLGELHGIPVLLKDTFATKDKLNTSAGSYALVGSVVPRDATVVERLRDAGAVILG 157
G L L G+P+++KD T + T+AG+ AL+G V DA VV+RL DAGAV LG
Sbjct: 67 AAGAALL--LAGVPIVIKDNINTAG-MPTTAGTPALLGFVPATDAPVVQRLLDAGAVPLG 123
Query: 158 KASLTEWYSFRALGKIPNGWCARAGQAKNPYLPSGDPCGSSSGSAISVAANMVTVSLGSE 217
KA++ E +F NG G +NPY P+ GSS G+A +VAA + LG++
Sbjct: 124 KANMHE-LAFGITSN--NG---AFGAVRNPYDPARIAGGSSGGTAAAVAARLAPAGLGTD 177
Query: 218 THGSILCPADRNSVVGLKPTVGLTSRAGVIPVLPQHDTIGAISRTVSDAVYLLDVIVGFD 277
T GS+ PA VVGL+PTVG S GV+P+ DT+G I+R+V+D LLD ++
Sbjct: 178 TGGSVRIPAALCGVVGLRPTVGRYSGDGVVPISHTRDTVGPIARSVADLA-LLDAVI--- 233
Query: 278 SRDYEATSEAARYIPVGGYKQFLNENGLKGKRLGVVRNLFSNALNGSTVITAFENHLNTL 337
T +AA PV L G RLGV F + L+ V E L L
Sbjct: 234 ------TGDAALPAPV----------ALAGLRLGVPAAPFWDGLDPD-VAAVAEAALAKL 276
Query: 338 RQSGATIVDDLEMANVDVISNPGKSGELTAMLAGFKIALNEYLQELVSSPVRSLADV--- 394
+G T V +L++ + EL GF IAL E L +L + + A V
Sbjct: 277 AAAGVTFV-ELDLPGLH---------ELNEA-VGFPIALYEALADLRAYLRENGAGVSFE 325
Query: 395 -IAFNQNNADMEKTKEYGQGTFISAEKTSGFGEKERKAVELMEKLSQDGIEKLMTENELD 453
+ + D+ + + S + R A+++ Q + + LD
Sbjct: 326 ELVARIASPDVRAIFR----DLLDPPQIS--EDAYRAALDVGRPRLQAWYRQAFARHGLD 379
Query: 454 ALVTPGTRVIPVLA---------------------------LGGYPGITVPAGYEGNQMP 486
A++ P T + G PG+++PAG + +P
Sbjct: 380 AILFPTTPLTAPPIGDDDTVILNGAAVPTFARVIRNTDPASNAGLPGLSLPAGLTPHGLP 439
Query: 487 FGICFGGLKGTEPKLIEIAYAFEQATMIRRPPF 519
G+ G G++ +L+ I A E+ P
Sbjct: 440 VGLELDGPAGSDRRLLAIGRALERVLGRLPAPD 472
>gnl|CDD|235921 PRK07056, PRK07056, amidase; Provisional.
Length = 454
Score = 156 bits (397), Expect = 3e-42
Identities = 99/316 (31%), Positives = 144/316 (45%), Gaps = 41/316 (12%)
Query: 40 ATIDEIQTAFDQNKLTSTQLVEFYITQIETLNPR---LRSVIEVNPD-ARSQAEKADLAR 95
T+ + + TS LVE + +I P R V+ D AR+ A+ AD R
Sbjct: 6 PTLAALAADLAAGRTTSRALVEAALARIAD--PAGEGARVFTHVDADAARAAADAADALR 63
Query: 96 KRNQGRRFLGELHGIPVLLKDTFATKDKLNTSAGSYALVGSVV-PRDATVVERLRDAGAV 154
L GIPV +KD F ++ T AGS L + DA V RLR AGAV
Sbjct: 64 AAGAAPS---PLAGIPVSVKDLFDVAGQV-TRAGSRVLADAPPAAADAPAVARLRRAGAV 119
Query: 155 ILGKASLTEWYSFRALGKIPNGWCARAGQAKNPYLPSGD----PCGSSSGSAISVAANMV 210
++G+ ++TE ++F LG P+ G +NP+ P GSSSG+A+SVA M
Sbjct: 120 LIGRTNMTE-FAFSGLGLNPH-----YGTPRNPWRRDVGDGRIPGGSSSGAAVSVADGMA 173
Query: 211 TVSLGSETHGSILCPADRNSVVGLKPTVGLTSRAGVIPVLPQHDTIGAISRTVSDAVYLL 270
+LG++T GSI PA + G KPT G +P+ D+IG ++R+V+ +
Sbjct: 174 AAALGTDTGGSIRIPAALCGLTGFKPTARRVPLQGAVPLSTTLDSIGPLARSVACCALVD 233
Query: 271 DVIVGFDSRDYEATSEAARYIPVGGYKQFLNENGLKGKRLGVVRNLFSNALNGSTVITAF 330
V+ G + A L+G RL V + + L+ +TV AF
Sbjct: 234 AVLAGEEPVVPAARP-------------------LEGLRLAVPTTVVLDGLD-ATVAAAF 273
Query: 331 ENHLNTLRQSGATIVD 346
E L L +GA I +
Sbjct: 274 ERALKRLSAAGAIIEE 289
>gnl|CDD|235723 PRK06170, PRK06170, amidase; Provisional.
Length = 490
Score = 140 bits (356), Expect = 2e-36
Identities = 85/254 (33%), Positives = 124/254 (48%), Gaps = 27/254 (10%)
Query: 40 ATIDEIQTAFDQNKLTSTQLVEFYITQIETLNPRLRSVIEVNPD-ARSQAEKADLARKRN 98
E+ A +++S +L + I +IE + ++ +++ + D AR+ A AD AR R
Sbjct: 12 LPATELAAALAAGEVSSVELTDLAIARIERHDGKINAIVVRDFDRARAAARAADAARARG 71
Query: 99 QGRRFLGELHGIPVLLKDTFATKDKLNTSAGSYALVGSVVPRDATVVERLRDAGAVILGK 158
+ G L GIPV +K++F L T+ G L V DA V RL+ AGAVILGK
Sbjct: 72 E----RGPLLGIPVTVKESFNVAG-LPTTWGFPDLRDYVPAEDAVAVARLKAAGAVILGK 126
Query: 159 AS----LTEWYSFRALGKIPNGWCARAGQAKNPYLPSGDPCGSSSGSAISVAANMVTVSL 214
+ L +W S+ + G NP+ + P GSS GSA ++AA +S+
Sbjct: 127 TNVPLGLQDWQSYNEI----------YGTTNNPWDLARTPGGSSGGSAAALAAGFGALSI 176
Query: 215 GSETHGSILCPADRNSVVGLKPTVGLTSRAG-VIPVLP----QHD--TIGAISRTVSDAV 267
GS+ GS+ PA V KPT+GL G + P P Q D G ++R+ D
Sbjct: 177 GSDIGGSLRVPAHYCGVYAHKPTLGLVPLRGHIPPPAPALPGQADLAVAGPMARSARDLA 236
Query: 268 YLLDVIVGFDSRDY 281
LLDV+ G D D
Sbjct: 237 LLLDVMAGPDPLDG 250
>gnl|CDD|236409 PRK09201, PRK09201, amidase; Provisional.
Length = 465
Score = 135 bits (342), Expect = 1e-34
Identities = 103/340 (30%), Positives = 152/340 (44%), Gaps = 55/340 (16%)
Query: 40 ATIDEIQTAFDQNKLTSTQLVEFYITQIETLNPRLRSVIEVNPD-ARSQAEKADLARKRN 98
+ EI A +L++ + + + +I NP+L + V + A ++A + D AR
Sbjct: 7 LSAAEIAAAVRAGELSARAVAQATLARIARANPQLNAFTAVTAERALAEAARIDAARAAG 66
Query: 99 QGRRFLGELHGIPVLLKDTFATKDKLNTSAGSYALVGSVVP--RDATVVERLRDAGAVIL 156
+ LG L G+P +K+ F L T AGS + P RDAT V RL AGAV++
Sbjct: 67 EP---LGPLAGVPFAVKNLFDVAG-LTTLAGS-KINRDRPPATRDATAVRRLEAAGAVLV 121
Query: 157 GKASLTEW-YSFRALGKIPNGWCARAGQAKNPYLPSGDPCGSSSGSAISVAANMVTVSLG 215
G ++ E+ Y F + G +NP+ + GSS GSA +VAA +V +LG
Sbjct: 122 GALNMDEYAYGF-------TTENSHYGATRNPHDLTRIAGGSSGGSAAAVAAGLVPFTLG 174
Query: 216 SETHGSILCPADRNSVVGLKPTVGLTSRAGVIPVLPQHDTIGAISRTVSDAVYLLDVIVG 275
S+T+GSI PA + GLKPT G SRAG P + D IG +R+V+D + DV+ G
Sbjct: 175 SDTNGSIRVPASLCGIFGLKPTYGRLSRAGSFPFVASLDHIGPFARSVADLALVYDVLQG 234
Query: 276 FDSRDYEATSEAARYIPVGGYKQFLNENGLKGKRLGVV-----RNLF----------SNA 320
D +D A P L + G +G R+ V+ + + A
Sbjct: 235 PDPQDPFQADRPAE--PTAP----LLDRGAEGLRIAVLGGYFAQWADPEARAAVDRVAKA 288
Query: 321 LNGST---------------VITAFEN---HLNTLRQSGA 342
L + +ITA E HL LR
Sbjct: 289 LGATREVELPEAARARAAAFIITASEGGNLHLPALRTRPQ 328
>gnl|CDD|236028 PRK07486, PRK07486, amidase; Provisional.
Length = 484
Score = 134 bits (340), Expect = 3e-34
Identities = 86/282 (30%), Positives = 138/282 (48%), Gaps = 27/282 (9%)
Query: 37 IIEATIDEIQTAFDQNKLTSTQLVEFYITQIETLNPRLRSVIEVNP--DARSQAEKADLA 94
I+ + + A + +++ +++ Y+ IE +NP + +++ + ++A + D A
Sbjct: 9 IVRLSAHALSRAIRRRQVSCVEVMRAYLAHIERVNPAVNAIVALRDRDALLAEAAEKDAA 68
Query: 95 RKRNQGRRFLGELHGIPVLLKDTFATKDKLNTSAGSYALVGSVVPRDATVVERLRDAGAV 154
R + R G LHG+P KD TK + T+ GS V DA VVER+R AGA+
Sbjct: 69 LARGEYR---GWLHGMPQAPKDLAPTKG-IRTTLGSPIFADQVPQEDAIVVERMRAAGAI 124
Query: 155 ILGKASLTEW----YSFRALGKIPNGWCARAGQAKNPYLPSGDPCGSSSGSAISVAANMV 210
+GK + E+ +++ + G +NPY PS GSS G+A ++A M+
Sbjct: 125 FIGKTNTPEFGLGSHTYNPV----------YGATRNPYDPSRSAGGSSGGAAAALALRML 174
Query: 211 TVSLGSETHGSILCPADRNSVVGLKPTVGLTSRAGVIPV-LPQHDTIGAISRTVSDAVYL 269
V+ GS+ GS+ PA N+V G +P+ G V + Q T G + RTV D L
Sbjct: 175 PVADGSDMMGSLRNPAAFNNVYGFRPSQGRVPHGPGGDVFVQQLGTEGPMGRTVEDVALL 234
Query: 270 LDVIVGFDSRDYEATSEAARYIPVGGYKQFLNENGLKGKRLG 311
L V G+D RD + +E + Q L E L+GKR+
Sbjct: 235 LAVQAGYDPRDPLSLAEDPA-----RFAQPL-EADLRGKRIA 270
Score = 40.0 bits (94), Expect = 0.003
Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 3/59 (5%)
Query: 462 VIPVLALGGYPGITVPAGYEGNQMPFGICFGGLKGTEPKLIEIAYAFEQAT--MIRRPP 518
V+P L G P I+VP G+ +P G+ G + ++++A+A+EQAT + RRPP
Sbjct: 422 VVPA-TLAGLPAISVPVGFNAAGLPMGMQIIGPPRADLAVLQLAHAYEQATDWVQRRPP 479
>gnl|CDD|168315 PRK05962, PRK05962, amidase; Validated.
Length = 424
Score = 129 bits (325), Expect = 1e-32
Identities = 94/276 (34%), Positives = 133/276 (48%), Gaps = 47/276 (17%)
Query: 84 ARSQAEKADLARKRNQGRRFLGELHGIPVLLKDTFATKDKLNTSAGSYALVGSVVPR--- 140
AR++A+ AD R + R LG L G V +KD F AG L GSV+ R
Sbjct: 26 ARAEADAAD---ARRRAGRSLGPLDGRIVSIKDLFDV-------AGEPTLAGSVIRRDAP 75
Query: 141 ----DATVVERLRDAGAVILGKASLTEWYSFRALGKIPNGWCARAGQAKNPYLPSGDPCG 196
DA +V+RLR+AGAVI+GK +TE ++F +G P+ G+ N P+ P G
Sbjct: 76 PAGADALIVQRLRNAGAVIIGKTHMTE-FAFTPVGLNPH-----YGEPGNAIDPARIPGG 129
Query: 197 SSSGSAISVAANMVTVSLGSETHGSILCPADRNSVVGLKPTVGLTSRAGVIPVLPQHDTI 256
SSSG+A+SVA +++GS+T GS+ PA N +VG KPT G P+ P D+I
Sbjct: 130 SSSGAAVSVAEGTSEIAIGSDTGGSVRIPAALNGLVGFKPTARRIPLEGAFPLSPSLDSI 189
Query: 257 GAISRTVSDAVYLLDVIVGFDSRDYEATSEAARYIPVGGYKQFLNENGLKGKRLGVVRNL 316
G ++RTV+D V+ G E + G R+G+ +
Sbjct: 190 GPLARTVADCAAADAVMAGEKPIPLEVLP-------------------VAGLRIGLPKGY 230
Query: 317 FSNALNGSTVITAFENHLNTLRQSGATI----VDDL 348
+ V AFE L L ++GA I +DDL
Sbjct: 231 LLADMEPD-VAAAFEASLAALEKAGARIADLAIDDL 265
>gnl|CDD|233981 TIGR02713, allophanate_hyd, allophanate hydrolase. Allophanate
hydrolase catalyzes the second reaction in an
ATP-dependent two-step degradation of urea to ammonia
and C02, following the action of the biotin-containing
urea carboxylase. The yeast enzyme, a fusion of
allophanate hydrolase to urea carboxylase, is designated
urea amidolyase [Central intermediary metabolism,
Nitrogen metabolism].
Length = 561
Score = 130 bits (330), Expect = 1e-32
Identities = 121/466 (25%), Positives = 188/466 (40%), Gaps = 90/466 (19%)
Query: 78 IEVNPDARSQAEKADLARKRNQGRRFLGELHGIPVLLKDTFATKDKLNTSAG--SYALVG 135
I + + A+ A L + + R L+G+P +KD L T+A ++A
Sbjct: 5 ISLLSEEDLLAQAAALDARDARPERL--PLYGVPFAVKDNIDVAG-LPTTAACPAFAYTP 61
Query: 136 SVVPRDATVVERLRDAGAVILGKASLTEWYSFRALG----KIPNGWCARAGQAKNPYLPS 191
DATVV LR AGA+++GK +L ++ A G + P G A +P S
Sbjct: 62 E---EDATVVALLRAAGAIVVGKTNLDQF----ATGLVGTRSPYGAVR---NAFDPAYIS 111
Query: 192 GDPCGSSSGSAISVAANMVTVSLGSETHGSILCPADRNSVVGLKPTVGLTSRAGVIPVLP 251
G GSSSGSA++VA +V +LG++T GS PA N++VGLKPT GL S GV+P
Sbjct: 112 G---GSSSGSAVAVARGLVPFALGTDTAGSGRVPAALNNIVGLKPTKGLVSTTGVVPACR 168
Query: 252 QHDTIGAISRTVSDAVYLLDVIVGFDSRDYEATSEAARYIPVGGYKQFLNENGLKGKRLG 311
D + + TV+DA +L + D+RD +R +P ++F R+G
Sbjct: 169 SLDCVSIFALTVADAEQVLRIAAAPDARD-----PYSRPLPAAALRRF-----PPPPRVG 218
Query: 312 VVRNL----FSNALNGSTVITAFENHLNTLRQSGATIVDDLEMANVDVISNPGKSGELTA 367
V R F ++ + AF + L G +V+ +D E A
Sbjct: 219 VPRAAQLEFFGDSQAEA----AFAAAVERLEALGVEVVE------ID----FAPFLETAA 264
Query: 368 MLAGFKIALNEYLQELVSSPVRSLADVIAFNQNNADMEKTKEYGQGTFISAEKTSGFGEK 427
+L Y V+ ++ + + + D T SA F +
Sbjct: 265 LL---------YEGPWVAERYAAVGEFVEAQPDALDPVVRGIITSATRFSAADA--FAAQ 313
Query: 428 ERKAVELMEKLSQDGIEKLMTENELDALVTPGTRVIPVLA------------LGGYP--- 472
R A L K E L+ +D L+ P P + LG Y
Sbjct: 314 YRLA-ALRRK-----AEALLA--GVDVLLVPTAPTHPTIEEVLADPVGLNSRLGTYTNFV 365
Query: 473 ------GITVPAGYEGNQMPFGICFGGLKGTEPKLIEIAYAFEQAT 512
+ VPAG+ + +PFG+ G + L + + A+
Sbjct: 366 NLLDLCAVAVPAGFRSDGLPFGVTLIGPAFHDAALASLGRRLQAAS 411
>gnl|CDD|180626 PRK06565, PRK06565, amidase; Validated.
Length = 566
Score = 129 bits (327), Expect = 3e-32
Identities = 96/306 (31%), Positives = 148/306 (48%), Gaps = 34/306 (11%)
Query: 35 FTIIEATIDEIQTAFDQNKLTSTQLVEFYITQIETLN-----PRLRSVIEVNPDARSQAE 89
+ E +I E++ A + + T+ +LV+ Y+ +I+ + L +V+ NPDA +AE
Sbjct: 2 IEVTEVSIAELRAALESGRTTAVELVKAYLARIDAYDGPATGTALNAVVVRNPDALKEAE 61
Query: 90 KADLARKRNQGRRFLGELHGIPVLLKDTFATKDKLNTSAGSYALVGSVVPRDATVVERLR 149
+D R R + LG L GIP KD++ K L ++GS A V RDA +ERLR
Sbjct: 62 ASDARRARGE---TLGPLDGIPYTAKDSYLVKG-LTAASGSPAFKDLVAQRDAFTIERLR 117
Query: 150 DAGAVILGKASLTEWYSFRALGKIPNGWCARA--GQAKNPY----LPSGDPCGSSSGSAI 203
AGA+ LGK ++ + NG R G+A++PY L + GSS+G+
Sbjct: 118 AAGAICLGKTNMP---------PMANGGMQRGVYGRAESPYNAAYLTAPFASGSSNGAGT 168
Query: 204 SVAANMVTVSLGSETHGSILCPADRNSVVGLKPTVGLTSRAGVIPVLPQHDTIGAISRTV 263
+ AA+ L ET S PA N + P+ G+ S G P+ P D + +RT+
Sbjct: 169 ATAASFSAFGLAEETWSSGRGPASNNGLCAYTPSRGVISVRGNWPLTPTMDVVVPYARTM 228
Query: 264 SDAVYLLDVIVGFDS---------RDYEATSEAARYIPVGGYKQFLNENGLKGKRLGVVR 314
+D + +LDVIV D + + +A+ P + LKGKR GV R
Sbjct: 229 ADLLEVLDVIVADDPDTRGDLWRLQPWVPIPKASEVRPASYLALAAGADALKGKRFGVPR 288
Query: 315 NLFSNA 320
++ NA
Sbjct: 289 -MYINA 293
Score = 36.7 bits (85), Expect = 0.034
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 470 GYPGITVPAGYEGN-QMPFGICFGGLKGTEPKLIEIAYAFEQATMIRRPPFVTP 522
G P +TVP G + MP G+ F G + L+ A AFE R P TP
Sbjct: 511 GVPTVTVPMGVMADIGMPVGLTFAGRAYDDNALLRFAAAFEATGSRRMVPPRTP 564
>gnl|CDD|236177 PRK08186, PRK08186, allophanate hydrolase; Provisional.
Length = 600
Score = 129 bits (327), Expect = 6e-32
Identities = 102/327 (31%), Positives = 145/327 (44%), Gaps = 67/327 (20%)
Query: 41 TIDEIQTAFDQNKLTSTQLVEFYITQIETLNPRLRSVIEVNPDARSQAEKADLARKRNQG 100
T+ ++ A+ LT +V +I I + P+A A+ A L +
Sbjct: 8 TLASLRAAYRAGTLTPRAVVAALYARIAA-VDDPEVWIHLRPEADLLAQAAALEARDPAA 66
Query: 101 RRFLGELHGIPVLLKDTFATKDK-----LNTSAG--SYALVGSVVPRDATVVERLRDAGA 153
L+G+P FA KD L T+A ++A RDATVV RLR AGA
Sbjct: 67 ----LPLYGVP------FAVKDNIDVAGLPTTAACPAFA---YTPERDATVVARLRAAGA 113
Query: 154 VILGKASLTEW----------YSFRALGKIPNGWCARAGQAKNPYLPSGDPCGSSSGSAI 203
+++GK +L ++ Y G + N + +P SG GSSSGSA+
Sbjct: 114 IVIGKTNLDQFATGLVGTRSPY-----GAVRNAF--------DPEYVSG---GSSSGSAV 157
Query: 204 SVAANMVTVSLGSETHGSILCPADRNSVVGLKPTVGLTSRAGVIPVLPQHDTIGAISRTV 263
+VA +V+ +LG++T GS PA N++VGLKPT+GL S GV+P D + + TV
Sbjct: 158 AVALGLVSFALGTDTAGSGRVPAAFNNIVGLKPTLGLLSTRGVVPACRTLDCVSVFALTV 217
Query: 264 SDAVYLLDVIVGFDSRDYEATSEAARYIPVGGYKQFLNENGL-KGKRLGVVRN----LFS 318
DA +L V+ GFD D +R P L G R+GV R F
Sbjct: 218 DDADAVLAVMAGFDPAD-----PYSRANPADA------PAALPAGPRVGVPRAAQLEFFG 266
Query: 319 NALNGSTVITAFENHLNTLRQSGATIV 345
+A AF L L GA +V
Sbjct: 267 DAEAE----AAFAAALARLEALGAELV 289
Score = 35.2 bits (82), Expect = 0.093
Identities = 19/83 (22%), Positives = 31/83 (37%), Gaps = 21/83 (25%)
Query: 451 ELDALVTPGTRVIPVLA------------LGGYP---------GITVPAGYEGNQMPFGI 489
+DAL+ P P +A LG Y + VPAG+ + +PFG+
Sbjct: 366 GIDALLVPTAPTHPTIAEVAADPIGLNSRLGTYTNFVNLLDLCALAVPAGFRADGLPFGV 425
Query: 490 CFGGLKGTEPKLIEIAYAFEQAT 512
+ L ++A + A
Sbjct: 426 TLIAPAFADQALADLAARLQAAL 448
>gnl|CDD|233982 TIGR02715, amido_AtzE, amidohydrolase, AtzE family. Members of
this protein family are aminohydrolases related to, but
distinct from, glutamyl-tRNA(Gln) amidotransferase
subunit A. The best characterized member is the biuret
hydrolase of Pseudomonas sp. ADP, which hydrolyzes
ammonia from the three-nitrogen compound biuret to yield
allophanate. Allophanate is also an intermediate in urea
degradation by the urea carboxylase/allophanate
hydrolase pathway, an alternative to urease [Unknown
function, Enzymes of unknown specificity].
Length = 452
Score = 124 bits (312), Expect = 9e-31
Identities = 107/352 (30%), Positives = 156/352 (44%), Gaps = 61/352 (17%)
Query: 41 TIDEIQTAFDQNKLTSTQLVEFYITQIETLNPRLRSVIEVNPD-ARSQAEKADLARKRNQ 99
+I EI A ++++ + E + +I + L + V + A + A + D
Sbjct: 1 SIVEIAGAIRSGRVSARAVAEATLARINQADGGLNAFTAVTAERALADAARIDADLAAGS 60
Query: 100 GRRFLGELHGIPVLLKDTFATKDKLNTSAGSYALVGSVVP--RDATVVERLRDAGAVILG 157
LG L G+P +K+ F L T AG+ + + P RDAT+V+RL AGAV++G
Sbjct: 61 P---LGPLAGVPFAVKNLFDVAG-LTTLAGA-KINRDLAPAKRDATLVQRLSAAGAVLVG 115
Query: 158 KASLTEW-YSFRALGKIPNGWCARAGQAKNPYLPSGDPCGSSSGSAISVAANMVTVSLGS 216
++ E+ Y F A G +NP+ + GSS GSA +VAA +V SLGS
Sbjct: 116 ALNMDEFAYGFTTEN-------AHYGPTRNPHDLTRIAGGSSGGSAAAVAAGLVPFSLGS 168
Query: 217 ETHGSILCPADRNSVVGLKPTVGLTSRAGVIPVLPQHDTIGAISRTVSDAVYLLDVIVGF 276
+T+GSI PA V GLKPT G SR GV P + D +G +R+V D DV+ G
Sbjct: 169 DTNGSIRVPASLCGVFGLKPTYGRLSRQGVFPFVASLDHVGPFARSVEDLALAYDVMQGP 228
Query: 277 DSRD-YEATSEAARYIPVGGYKQFLNENGLKGKRLGVV-----RNLFS----------NA 320
D +D + A +P+ L G+ G R+ V+ +N A
Sbjct: 229 DPQDPFCTDRPAEPTVPL------LP-AGISGLRIAVLGGWFQQNADPEALAAVGRVAKA 281
Query: 321 LNGST---------------VITAFEN---HLNTLRQSGATIVDDLEMANVD 354
L +T VITA E HL+ LR D + A D
Sbjct: 282 LGATTIVELPDAERARAAAFVITASEGGNLHLDALRTRPQ----DFDPATRD 329
>gnl|CDD|235698 PRK06102, PRK06102, hypothetical protein; Provisional.
Length = 452
Score = 121 bits (305), Expect = 9e-30
Identities = 98/311 (31%), Positives = 146/311 (46%), Gaps = 39/311 (12%)
Query: 40 ATIDEIQTAFDQNKLTSTQLVEFYITQIETLNPRLRSVIEVNPDARSQAEKADLARKRNQ 99
+ ++ L Q+ E + I + ++V + R+ E A+ + R +
Sbjct: 6 KSAAQLAVLIQSGALDPVQVAEQALDAIA--SYADQAVFISLTEERAMRE-AEASSARWR 62
Query: 100 GRRFLGELHGIPVLLKDTFATKDKLNTSAGSYALVG-SVVPRDATVVERLRDAGAVILGK 158
R LG L GIP+ KD F T+AGS L + RDA VV L AG V +G+
Sbjct: 63 AGRSLGLLDGIPIAWKDLFDVAG-SVTTAGSVVLANAAPASRDAAVVALLARAGMVSIGR 121
Query: 159 ASLTEWYSFRALGKIPNGWCARAGQAKNPYLPSGD----PCGSSSGSAISVAANMVTVSL 214
+++E ++F LG P+ G NP S D P GSSSGSA++VAA +V V++
Sbjct: 122 TNMSE-FAFSGLGLNPH-----YGTPVNPR--STDVPRIPGGSSSGSAVAVAAGLVPVAM 173
Query: 215 GSETHGSILCPADRNSVVGLKPTVGLTSRAGVIPVLPQHDTIGAISRTVSDAVYLLDVIV 274
G++T GS+ PA N +VG K T G S GV P+ D++G + R+V DAV++ +
Sbjct: 174 GTDTGGSVRIPAAFNGLVGYKATRGRYSMDGVFPLAKSLDSLGPLCRSVRDAVWIDAAMR 233
Query: 275 GFDSRDYEATSEAARYIPVGGYKQFLNENGLKGKRLGVVRN-LFSNALNGSTVITAFENH 333
G T+ P L G RL V +F +A G V AFE
Sbjct: 234 G-------LTAPDVVRRP------------LAGLRLVVPETVVFDDAEPG--VRAAFEAA 272
Query: 334 LNTLRQSGATI 344
+ L+ +GA +
Sbjct: 273 VERLQAAGALV 283
>gnl|CDD|235979 PRK07235, PRK07235, amidase; Provisional.
Length = 502
Score = 119 bits (301), Expect = 5e-29
Identities = 87/242 (35%), Positives = 112/242 (46%), Gaps = 16/242 (6%)
Query: 105 GELHGIPVLLKD--TFATKDKLNTSAGSYALVGSVVPRDATVVERLRDAGAVILGKASLT 162
G+L G V LKD A +N GS L G V DATVV RL DAGA I+GKA+
Sbjct: 86 GKLAGKTVALKDNVAVAGVPMMN---GSSTLEGFVPSFDATVVTRLLDAGATIVGKATC- 141
Query: 163 EWYSFRALGKIPNGWCARAGQAKNPYLPSGDPCGSSSGSAISVAANMVTVSLGSETHGSI 222
E F + G NP P GSSSGSA VAA V +++G + GSI
Sbjct: 142 EDLCFSGGSHTSD-----PGPVHNPRDPGYSAGGSSSGSAALVAAGEVDMAIGGDQGGSI 196
Query: 223 LCPADRNSVVGLKPTVGLTSRAGVIPVLPQHDTIGAISRTVSDAVYLLDVIVGFDSRDYE 282
P+ + G+KPT GL G P+ D +G ++ TV D LL+VI G D D
Sbjct: 197 RIPSAWCGIYGMKPTHGLVPYTGAFPIERTIDHLGPMTATVRDNALLLEVIAGRDGLD-- 254
Query: 283 ATSEAARYIPVGGYKQFLNENGLKGKRLGVVRNLFSNALNGSTVITAFENHLNTLRQSGA 342
PV Y L+ G+KG ++G++R F + V A L GA
Sbjct: 255 --PRQPAQPPVDDYTAALDR-GVKGLKIGILREGFGLPNSEPEVDEAVRAAAKRLEDLGA 311
Query: 343 TI 344
T+
Sbjct: 312 TV 313
Score = 31.5 bits (72), Expect = 1.1
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 470 GYPGITVPAGYEGNQMPFGICFGGLKGTEPKLIEIAYAFEQAT 512
G+P ++VP G + +P G+ G E ++ A AFE +
Sbjct: 460 GHPAMSVPCGLV-DGLPVGLMLVGRHFDEATILRAAAAFEASG 501
>gnl|CDD|180437 PRK06169, PRK06169, putative amidase; Provisional.
Length = 466
Score = 117 bits (294), Expect = 3e-28
Identities = 86/291 (29%), Positives = 131/291 (45%), Gaps = 57/291 (19%)
Query: 54 LTSTQLVEFY---------ITQ-----IETLNPRLRSVIEVNPD-ARSQAEKADLARKRN 98
LT+ +L+ Y TQ I+ +P + + V+ + A + A ++ +R
Sbjct: 7 LTAVELLAAYRRGELSPVEATQAVLDRIDRRDPAVNAFCLVDAEGALAAARASEERWRRG 66
Query: 99 QGRRFLGELHGIPVLLKDTFATKDKLNTSAGSYAL-VGSVVPRDATVVERLRDAGAVILG 157
+ G L G+PV +KD F T+ T GS A+ DA V RLR+AGAV+LG
Sbjct: 67 EP---CGLLDGVPVSIKDIFLTRG-WPTLRGSRAIDADGPWDVDAPAVARLREAGAVLLG 122
Query: 158 KASLTEWYSFRALGKIPNGW-----CARAGQAKNPYLPSGDPCGSSSGSAISVAANMVTV 212
K + E+ GW G +NP+ GSS G+A +VA M +
Sbjct: 123 KTTTPEF-----------GWKGVTDSPLYGITRNPWDTRLTAGGSSGGAAAAVALGMGPL 171
Query: 213 SLGSETHGSILCPADRNSVVGLKPTVGLTSRAGVIPVLP-------QHDTIGAISRTVSD 265
S+G++ GS+ PA G KPT G +P+ P H +G ++RTV+D
Sbjct: 172 SVGTDGGGSVRIPASFCGTFGFKPTFGR------VPLYPASPFGTLAH--VGPMTRTVAD 223
Query: 266 AVYLLDVIVGFDSRDYEATSEAARYIPVGGYKQFLNENGLKGKRLGVVRNL 316
A LLDVI D+RD+ +A P + L+ ++G R+ L
Sbjct: 224 AALLLDVIARPDARDW-----SALPPPTTSFLDALDR-DVRGLRIAYSPTL 268
>gnl|CDD|236029 PRK07487, PRK07487, amidase; Provisional.
Length = 469
Score = 116 bits (294), Expect = 4e-28
Identities = 79/252 (31%), Positives = 125/252 (49%), Gaps = 34/252 (13%)
Query: 44 EIQTAFDQNKLTSTQLVEFYITQIETLNPRLRSVIEVNPD-ARSQAEKADLARKRNQGRR 102
E+ A +++ + E + +++ +NP + +V++ P+ A +QA+ D AR R
Sbjct: 12 ELAAAVRSRDVSAREAAEAALARLDAVNPAINAVVDHRPEEALAQADAVDAARARGDD-- 69
Query: 103 FLGELHGIPVLLK---DT--FATKDKLNTSAGSYALVGSVVPRDATVVERLRDAGAVILG 157
G L G+PV +K D FAT + G + P D+ VV+ LR AGAVI+G
Sbjct: 70 -PGPLAGVPVTVKVNVDQAGFAT------TNGVRLQKDLIAPADSPVVDNLRKAGAVIIG 122
Query: 158 KASLTEWYSFRALGKIPNGWCARAGQAKNPYLPSGDPCGSSSGSAISVAANMVTVSLGSE 217
+ + T +S+R P G+ NP+ PS P GSS G+A +VAA + ++ G++
Sbjct: 123 R-TNTPAFSYRWFTDNP-----LHGRTLNPWDPSLTPGGSSGGAAAAVAAGIGAIAHGTD 176
Query: 218 THGSILCPADRNSVVGLKPTVG--------LTSRAGVIPVLPQHDTI-GAISRTVSDAVY 268
GSI PA V GL+PT+G R P+ Q ++ G ++RTV+D
Sbjct: 177 IGGSIRYPAYACGVHGLRPTLGRVPAYNASSPER----PIGAQLMSVQGPLARTVADLRL 232
Query: 269 LLDVIVGFDSRD 280
L + D RD
Sbjct: 233 ALAAMAAPDPRD 244
>gnl|CDD|171524 PRK12470, PRK12470, amidase; Provisional.
Length = 462
Score = 114 bits (288), Expect = 1e-27
Identities = 86/244 (35%), Positives = 120/244 (49%), Gaps = 27/244 (11%)
Query: 54 LTSTQLVEFYITQIETLNPRLRSVIEVNPD-ARSQAEKADLARKRNQGRRFLGELHGIPV 112
LT+ L+E Y+ +IE L+ LR+ V D AR++AE A ++ + G R L G+P+
Sbjct: 23 LTAPMLLEVYLQRIERLDSHLRAYRVVLFDRARAEAEAAQ--QRLDAGERL--PLLGVPI 78
Query: 113 LLKDTFATKDKLNTSAGSYALVGSVVPRDATVVERLRDAGAVILGKASLTEWYSFRALGK 172
+KD ++ T + G DA VV RLR AGAVI+GK ++ E L
Sbjct: 79 AIKDDVDVAGEVTTYGSAGH--GPAATSDAEVVRRLRAAGAVIIGKTNVPE------LMI 130
Query: 173 IPNGWCARAGQAKNPYLPSGDPCGSSSGSAISVAANMVTVSLGSETHGSILCPADRNSVV 232
+P G +NP+ P+ P GSS GSA +VAA + V+LGS+ GSI P+ +
Sbjct: 131 MPFTESLAFGATRNPWDPNRTPGGSSGGSAAAVAAGLAPVALGSDGGGSIRIPSTWCGLF 190
Query: 233 GLKPTVGLTSRAGVIPVLPQHD-------TIGAISRTVSDAVYLLDVIVGFDSRDYEATS 285
GLKP S L HD G I+R+V DA LLD + E +
Sbjct: 191 GLKPQRDRIS-------LEPHDGAWQGLSVNGPIARSVMDAALLLDATTTVPGPEGEFVA 243
Query: 286 EAAR 289
AAR
Sbjct: 244 AAAR 247
Score = 30.6 bits (69), Expect = 1.9
Identities = 24/97 (24%), Positives = 37/97 (38%), Gaps = 28/97 (28%)
Query: 450 NELDALVTPGT--------------------RVIPVLA------LGGYPGITVPAGYEGN 483
+++D +VTPGT V+ + L G P VP ++G+
Sbjct: 364 DDVDVVVTPGTATGPSRIGAYQRRGAVSTLLLVVQRVPYFQVWNLTGQPAAVVPWDFDGD 423
Query: 484 QMPFGICFGGLKGTEPKLIEIAYAFEQAT--MIRRPP 518
+P + G E L+ +A E A RRPP
Sbjct: 424 GLPMSVQLVGRPYDEATLLALAAQIESARPWAHRRPP 460
>gnl|CDD|235915 PRK07042, PRK07042, amidase; Provisional.
Length = 464
Score = 106 bits (268), Expect = 8e-25
Identities = 75/244 (30%), Positives = 122/244 (50%), Gaps = 19/244 (7%)
Query: 41 TIDEIQTAFDQNKLTSTQLVEFYITQIETLNPRLRSVIEVNPD-ARSQAEKADLARKRNQ 99
+ E+ + L+ ++ E + I P L ++ +P+ AR+ A +A AR
Sbjct: 8 SAVELLAGYRARSLSPVEVTEAVLAHIARWEPHLNALYAFDPEAARAAA-RASTARWAK- 65
Query: 100 GRRFLGELHGIPVLLKDTFATKDKLNTSAGSYALVGSVVPRDATVVERLRDAGAVILGKA 159
G LG L G+PV +K+ AT+ + G+ A DA RLR+AGAVIL K
Sbjct: 66 GEP-LGPLDGVPVTIKENIATRG-VPVPLGTAATDLPPAAADAPPAARLREAGAVILAKT 123
Query: 160 SLTEWYSFRALGKIPNGWCARAGQAKNPYLPSGDPCGSSSGSAISVAANMVTVSLGSETH 219
++ ++ G + +G + G +NP+ +P GSS+G+ + AA + LG++
Sbjct: 124 TMPDY------GMLSSGLSSFHGLTRNPWDLDQNPGGSSAGAGAAAAAGYGPLHLGTDIG 177
Query: 220 GSILCPADRNSVVGLKPTVGLTSRAGVIPVLPQH--DTIGAISRTVSDAVYLLDVIVGFD 277
GS+ PA +VGLKP++G IP+ P + G ++RTV DA L+ V+ D
Sbjct: 178 GSVRLPAGWCGIVGLKPSLGR------IPIDPPYTGRCAGPMTRTVDDAALLMSVLSRPD 231
Query: 278 SRDY 281
+RD
Sbjct: 232 ARDG 235
>gnl|CDD|235686 PRK06061, PRK06061, amidase; Provisional.
Length = 483
Score = 104 bits (260), Expect = 9e-24
Identities = 83/234 (35%), Positives = 118/234 (50%), Gaps = 35/234 (14%)
Query: 54 LTSTQLVEFYITQIETLNPRLRSVIEVNPD-ARSQAEKADLARKRNQGRRFLGELHGIPV 112
+TS +LV + +IE P L + V + A ++A +AD R+R G R L G+P+
Sbjct: 32 VTSVELVRRSLRRIEASQPTLNAFRVVRAEAALAEAAEAD--RRRAAGDRL--PLLGVPI 87
Query: 113 LLKDTFATKDKLNTSAG---SYALVGSVVP--RDATVVERLRDAGAVILGKASLTEWYSF 167
A KD ++ AG ++ G V P D+ VV RLR AGAVI+GK + E
Sbjct: 88 ------AVKDDVDV-AGVPTAFGTAGEVPPATADSEVVRRLRAAGAVIVGKTNTCE---- 136
Query: 168 RALGKIPNGWCARAGQAKNPYLPSGDPCGSSSGSAISVAANMVTVSLGSETHGSILCPAD 227
LG+ P G +NP+ P GSS GSA +VAA +VT ++GS+ GS+ PA
Sbjct: 137 --LGQWPFTSGPAFGHTRNPWSRDHTPGGSSGGSAAAVAAGLVTAAIGSDGAGSVRIPAA 194
Query: 228 RNSVVGLKPTVGLTSRAGVIPVLPQHD------TIGAISRTVSDAVYLLDVIVG 275
+VG+KP + G I P + G ++RTV+DA LLD G
Sbjct: 195 WTHLVGIKP------QRGRISTWPLPEAFNGLTVNGPLARTVADAALLLDAASG 242
Score = 35.1 bits (81), Expect = 0.10
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 470 GYPGITVPAGYEGNQMPFGICFGGLKGTEPKLIEIAYAFEQAT--MIRRPP 518
G+P I VPAG+ + +P G G +EP LI +A E + R+PP
Sbjct: 426 GWPSINVPAGFTSDGLPIGAQLMGPANSEPLLISLAAQLEAVSGWAERQPP 476
>gnl|CDD|235945 PRK07139, PRK07139, amidase; Provisional.
Length = 439
Score = 88.2 bits (219), Expect = 1e-18
Identities = 59/167 (35%), Positives = 82/167 (49%), Gaps = 8/167 (4%)
Query: 114 LKDTFATKDKLNTSAGSYALVGSVVPRDATVVERLRDAGAVILGKASLTEWYSFRALGKI 173
+KD FAT + T A S +L +ATVV++L +AGA + K E LG
Sbjct: 44 IKDNFATSEGP-THASSKSLENFKPSYNATVVQKLINAGAKPVAKVHCDEL----GLGG- 97
Query: 174 PNGWCARAGQAKNPYLPSGDPCGSSSGSAISVAANMVTVSLGSETHGSILCPADRNSVVG 233
G + G KNP S GSSSGSA + N ++ ++GS+T S+ PA VG
Sbjct: 98 -TGLFSAFGLIKNPLDSSKLVGGSSSGSAATFNKN-ISFAIGSDTGDSVRLPASFIGKVG 155
Query: 234 LKPTVGLTSRAGVIPVLPQHDTIGAISRTVSDAVYLLDVIVGFDSRD 280
KP+ G SR G+ DT+ + V+DA+ L V+ G D D
Sbjct: 156 FKPSYGAISRYGLFAYASSLDTVAYFTHNVNDAIILSKVLFGKDEND 202
>gnl|CDD|181154 PRK07869, PRK07869, amidase; Provisional.
Length = 468
Score = 87.0 bits (216), Expect = 3e-18
Identities = 60/221 (27%), Positives = 91/221 (41%), Gaps = 32/221 (14%)
Query: 54 LTSTQLVEFYITQIETLNPRLRSVI-EVNPDARSQAEKADLARKRNQGRRFLGELHGIPV 112
+++ ++VE I + E +NP L ++ AR +A + G G+P
Sbjct: 29 VSAAEVVEAAIARAEAVNPALNALAYAAFDRARDRAA---------RPGSQGGFFSGVPT 79
Query: 113 LLKDTFATKDKLNTSAGSYALVGSVVPRDATVVERLRDAGAVILGKASLTEWYSFRALGK 172
+KD L T GS A D+ + G + LGK L E+
Sbjct: 80 FIKDNVDVAG-LPTMHGSDAWTPRPAKADSDFARQFLATGLISLGKTQLPEF-------- 130
Query: 173 IPNGWCA-----RAGQAKNPYLPSGDPCGSSSGSAISVAANMVTVSLGSETHGSILCPAD 227
G+ A R G +NP+ SS GSA VAA +V ++ ++ GSI PA
Sbjct: 131 ---GFSASTEHPRLGPVRNPWNTDYSAGASSGGSAALVAAGVVPIAHANDGGGSIRIPAA 187
Query: 228 RNSVVGLKPTVG--LTSRAG-VIPVLPQHDTIGAISRTVSD 265
+VGLKP+ G +PV + G ++RTV D
Sbjct: 188 CCGLVGLKPSRGRLPLDPELRRLPVNIVAN--GVLTRTVRD 226
Score = 40.4 bits (95), Expect = 0.002
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 470 GYPGITVPAGYEGNQMPFGICFGGLKGTEPKLIEIAYAFEQA 511
G P I++P G + +P G+ F G E L+E+AY E+A
Sbjct: 420 GEPAISLPLGQSSDGLPVGMMFSADVGDEATLLELAYELEEA 461
>gnl|CDD|166363 PLN02722, PLN02722, indole-3-acetamide amidohydrolase.
Length = 422
Score = 84.2 bits (208), Expect = 2e-17
Identities = 57/158 (36%), Positives = 78/158 (49%), Gaps = 11/158 (6%)
Query: 107 LHGIPVLLKDTFATKDKLNTSAGS--YALVGSVVPRDATVVERLRDAGAVILGKASLTEW 164
LHG+ +KD F + + T G+ +A S A V + GA +GK + E
Sbjct: 27 LHGLTFAVKDIFDVEGYV-TGFGNPDWARTHSAATSTAPAVLAVLRGGATCVGKTIMDEM 85
Query: 165 -YSFRALGKIPNGWCARAGQAKNPYLPSGDPCGSSSGSAISVAANMVTVSLGSETHGSIL 223
YS NG A G NP P P GSSSGSA++V A +V SLG++T GS+
Sbjct: 86 AYSI-------NGENAHYGTPTNPIAPDRVPGGSSSGSAVAVGAKLVDFSLGTDTGGSVR 138
Query: 224 CPADRNSVVGLKPTVGLTSRAGVIPVLPQHDTIGAISR 261
PA + G +P+ G S GVIP+ DT+G +R
Sbjct: 139 VPASYCGIFGFRPSHGAVSTVGVIPMAQSFDTVGWFAR 176
>gnl|CDD|181375 PRK08310, PRK08310, amidase; Provisional.
Length = 395
Score = 83.5 bits (207), Expect = 3e-17
Identities = 59/155 (38%), Positives = 76/155 (49%), Gaps = 15/155 (9%)
Query: 117 TFATKD-----KLNTSAGSYA-LVGSVVP-RDATVVERLRDAGAVILGKASLTEW-YSFR 168
FA KD T G+ L S V R A VE+L AGA +GK E +S
Sbjct: 30 RFAVKDVFDVAGYVTGCGNPDWLAESPVATRTAPAVEKLLAAGARFVGKTQTDELAFSL- 88
Query: 169 ALGKIPNGWCARAGQAKNPYLPSGDPCGSSSGSAISVAANMVTVSLGSETHGSILCPADR 228
NG A G NP P P GSSSGSA +VA + +LG++T GS+ PA
Sbjct: 89 ------NGQNAHYGTPVNPAAPDRVPGGSSSGSAAAVAGGLADFALGTDTGGSVRAPASF 142
Query: 229 NSVVGLKPTVGLTSRAGVIPVLPQHDTIGAISRTV 263
+ GL+PT G S GV+P+ P DT+G +R +
Sbjct: 143 CGLYGLRPTHGRISLEGVMPLAPSFDTVGWFARDI 177
>gnl|CDD|180608 PRK06529, PRK06529, amidase; Provisional.
Length = 482
Score = 83.7 bits (207), Expect = 4e-17
Identities = 61/205 (29%), Positives = 101/205 (49%), Gaps = 22/205 (10%)
Query: 48 AFDQNKLTSTQLVEFYITQIETLNPRLRSVIEVNPDARSQAEKADLARKRNQGRRFLGE- 106
A Q ++T +LV I + + LNP L +++ +E+ + A + + R F G+
Sbjct: 12 AVQQGQVTPLELVTQAIYKAKKLNPTLNAIV---------SERYEEALEEAKQRDFSGKP 62
Query: 107 LHGIPVLLKDTFATKDKLNTSAGSYALVGSVVPRDATVVERLRDAGAVILGKASLTEWYS 166
G+P+ LKD +++GS + V+RL D G +ILG+++ E +
Sbjct: 63 FAGVPIFLKDLGQELKGQLSTSGSRLFKNYQATKTDLYVKRLEDLGFIILGRSNTPE-FG 121
Query: 167 FRALGKIPNGWCARAGQAKNPYLPSGDPCGSSSGSAISVAANMVTVSLGSETHGSILCPA 226
F+ I + + G P+ S + GSS G+A V++ +V ++ S+ GSI PA
Sbjct: 122 FK---NISDS--SLHGPVNLPFDNSRNAGGSSGGAAALVSSGIVALAAASDGGGSIRIPA 176
Query: 227 DRNSVVGLKPTVGLTSRAGVIPVLP 251
N ++GLKP SR G IPV P
Sbjct: 177 SFNGLIGLKP-----SR-GRIPVGP 195
Score = 33.3 bits (76), Expect = 0.37
Identities = 26/87 (29%), Positives = 37/87 (42%), Gaps = 10/87 (11%)
Query: 432 VELMEKLSQDGIEKLMTENEL------DAL-VTPGTRVIPVLALGGYPGITVPAGYEGNQ 484
+LM L+Q I + L +L +TP T + L G P I++P
Sbjct: 394 SKLMANLAQAEIFSSEEQQNLVETMFEKSLAITPYT---ALANLTGQPAISLPTYETKEG 450
Query: 485 MPFGICFGGLKGTEPKLIEIAYAFEQA 511
+P G+ KG E L+ IA FE A
Sbjct: 451 LPMGVQLIAAKGREDLLLGIAEQFEAA 477
>gnl|CDD|227125 COG4786, FlgG, Flagellar basal body rod protein [Cell motility and
secretion].
Length = 265
Score = 31.1 bits (71), Expect = 1.1
Identities = 27/101 (26%), Positives = 40/101 (39%), Gaps = 19/101 (18%)
Query: 271 DVIVGFDSRDYEATSEAARYIPVGGYK--QFLNENGLKGKRLGVVRNLFS-NALNGSTVI 327
+ +G D + VG F N GLK ++G NL+ A +G V
Sbjct: 152 SITIGKDGTVSVTIRGNTDPVQVGQIGLVNFDNPAGLK--KIG--NNLYQETAASGPIVG 207
Query: 328 TAFENHLNTLRQSGATIVDDLEMANVDVISNPGKSGELTAM 368
+N +RQ G LE +NV+V+ E+T M
Sbjct: 208 VPGDNGFGAIRQ-GF-----LEASNVNVVE------EMTDM 236
>gnl|CDD|238886 cd01903, Ntn_AC_NAAA, AC_NAAA This conserved domain includes two
closely related proteins, acid ceramidase (AC, also
known as N-acylsphingosine amidohydrolase), and
N-acylethanolamine-hydrolyzing acid amidase (NAAA). AC
catalyzes the hydrolysis of ceramide to sphingosine and
fatty acid. Ceramide is required for the biosynthesis of
most sphingolipids and plays an important role in many
signal transduction pathways by inducing apoptosis
and/or arresting cell growth. An inherited deficiency of
AC activity leads to the lysosomal storage disorder
known as Farber disease. AC is considered a "rheostat"
important for maintaining the proper intracellular
levels of these lipids since hydrolysis of ceramide is
the only source of sphingosine in cells. NAAA is a
eukaryotic glycoprotein that hydrolyzes bioactive
N-acylethanolamines, including anandamide (an
endocannabinoid) and N-palmitoylethanolamine (an
anti-inflammatory and neuroprotective substance), to
fatty acids and ethanolamine at acidic pH. NAAA shows
structural and functional similarity to acid ceramidase,
but lacks the ceramide-hydrolyzing activity of AC.
Length = 231
Score = 30.7 bits (70), Expect = 1.3
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 13/76 (17%)
Query: 103 FLGELHGIPV--LLKDTFAT-------KDKLNT---SAGSYALVGSVVPRDATVVERLRD 150
L + GIPV L+++T +KL+T A +Y +VG V P + V+ R RD
Sbjct: 92 ALLKKDGIPVSWLIRETLENATSYEDAVEKLSTTPILAPAYFIVGGVKPGEGVVITRNRD 151
Query: 151 AGA-VILGKASLTEWY 165
+ A V W+
Sbjct: 152 SVADVYPLDLKNGTWF 167
>gnl|CDD|100090 cd03088, ManB, ManB is a bacterial phosphomannomutase (PMM) that
catalyzes the conversion of mannose 6-phosphate to
mannose-1-phosphate in the second of three steps in the
GDP-mannose pathway, in which GDP-D-mannose is
synthesized from fructose-6-phosphate. In Mycobacterium
tuberculosis, the causative agent of tuberculosis, PMM
is involved in the biosynthesis of mannosylated
lipoglycans that participate in the association of
mycobacteria with host macrophage phagocytic receptors.
ManB belongs to the the alpha-D-phosphohexomutase
superfamily which includes several related enzymes that
catalyze a reversible intramolecular phosphoryl transfer
on their sugar substrates. Other members of this
superfamily include the phosphoglucomutases (PGM1 and
PGM2), phosphoglucosamine mutase (PNGM),
phosphoacetylglucosamine mutase (PAGM), the bacterial
phosphoglucosamine mutase GlmM, and the bifunctional
phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of
these enzymes has four domains with a centrally located
active site formed by four loops, one from each domain.
All four domains are included in this alignment model.
Length = 459
Score = 31.0 bits (71), Expect = 1.6
Identities = 34/111 (30%), Positives = 41/111 (36%), Gaps = 32/111 (28%)
Query: 206 AANMVTVSLGSETHGSILCPADRNSVVGLK---PTVGLTSRAGVIPVLPQHDTIGAISRT 262
A MVT GS H I PADRN GLK P G ++A +L +
Sbjct: 88 PAIMVT---GS--H--I--PADRN---GLKFYRPD-GEITKADEAAILAAL---VELPEA 131
Query: 263 VSDAVYLLDVIVGFDSRDYEATSE-AARYIPVGGYKQFLNENGLKGKRLGV 312
+ D L D +A ARY F LKG R+GV
Sbjct: 132 LFDPAGALL------PPDTDAADAYIARYT------DFFGAGALKGLRIGV 170
>gnl|CDD|132750 cd06952, NR_LBD_TR2_like, The ligand binding domain of the orphan
nuclear receptors TR4 and TR2. The ligand binding
domain of the TR4 and TR2 (human testicular receptor 4
and 2): TR4 and TR2 are orphan nuclear receptors.
Several isoforms of TR4 and TR2 have been isolated in
various tissues. TR2 is abundantly expressed in the
androgen-sensitive prostate. TR4 transcripts are
expressed in many tissues, including central nervous
system, adrenal gland, spleen, thyroid gland, and
prostate. The expression of TR2 is negatively regulated
by androgen, retinoids, and radiation. The expression of
both mouse TR2 and TR4 is up-regulated by neurocytokine
ciliary neurotrophic factor (CNTF) in mouse. It has
shown that human TR2 binds to a wide spectrum of natural
hormone response elements (HREs) with distinct
affinities suggesting that TR2 may cross-talk with other
gene expression regulation systems. The genes responding
to TR2 or TR4 include genes that are regulated by
retinoic acid receptor, vitamin D receptor, peroxisome
proliferator-activated receptor. TR4/2 binds to HREs as
a dimer. Like other members of the nuclea r receptor
(NR) superfamily of ligand-activated transcription
factors, TR2-like receptors have a central well
conserved DNA binding domain (DBD), a variable
N-terminal domain, a flexible hinge and a C-terminal
ligand binding domain (LBD).
Length = 222
Score = 30.4 bits (69), Expect = 2.0
Identities = 22/103 (21%), Positives = 48/103 (46%), Gaps = 24/103 (23%)
Query: 36 TIIEATIDEIQTAFDQNKLTST---QLVEF------YITQIETLNPR------LRSVIEV 80
TI+ A I+ +QT+ Q+KL++ Q++E ++ ++ L+ L++++
Sbjct: 82 TILAAIINHLQTSIQQDKLSADKVKQVMEHINKLQEFVNSMQKLDVDDHEYAYLKAIVLF 141
Query: 81 NPDARSQA---------EKADLARKRNQGRRFLGELHGIPVLL 114
+PD Q EKA + + G+ + + + + LL
Sbjct: 142 SPDHPGQELRQQIEKLQEKALMELRDYVGKTYPEDEYRLSKLL 184
>gnl|CDD|143428 cd07110, ALDH_F10_BADH, Arabidopsis betaine aldehyde dehydrogenase
1 and 2, ALDH family 10A8 and 10A9-like. Present in
this CD are the Arabidopsis betaine aldehyde
dehydrogenase (BADH) 1 (chloroplast) and 2
(mitochondria), also known as, aldehyde dehydrogenase
family 10 member A8 and aldehyde dehydrogenase family 10
member A9, respectively, and are putative dehydration-
and salt-inducible BADHs (EC 1.2.1.8) that catalyze the
oxidation of betaine aldehyde to the compatible solute
glycine betaine.
Length = 456
Score = 30.4 bits (69), Expect = 2.6
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 111 PVLLKDTFATKDKLNTSAGS--YALVGSVVPRDATVVERLRDA 151
PVL +FAT+D+ A Y L +V+ RDA +R+ +A
Sbjct: 366 PVLCVRSFATEDEAIALANDSEYGLAAAVISRDAERCDRVAEA 408
>gnl|CDD|237556 PRK13915, PRK13915, putative glucosyl-3-phosphoglycerate synthase;
Provisional.
Length = 306
Score = 29.1 bits (66), Expect = 5.0
Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 246 VIPVLPQHDTIGAISRTVSDAVY--LLDVIVGFDSRDYEATSEAAR 289
V+P L + +T+G + ++ + L+D ++ DS +AT+E A
Sbjct: 36 VLPALNEEETVGKVVDSIRPLLMEPLVDELIVIDSGSTDATAERAA 81
>gnl|CDD|227409 COG5077, COG5077, Ubiquitin carboxyl-terminal hydrolase
[Posttranslational modification, protein turnover,
chaperones].
Length = 1089
Score = 29.5 bits (66), Expect = 5.6
Identities = 19/97 (19%), Positives = 29/97 (29%), Gaps = 13/97 (13%)
Query: 45 IQTAFDQNKLTSTQLVEFYITQIETLNPRLRSVIEVNPDARSQAEKADLARKRNQGRRFL 104
I+ F N L EFY+ + T L V+ + + N R +
Sbjct: 890 IRLCFLSNGYQHVYLAEFYVEKDYTAVDHLHIVVTKVGCTDELKKSVLVYEVVNL--RPV 947
Query: 105 GELHGIPVLLKDTFATKDKLNTSAGSYALVGSVVPRD 141
LK + +T L G V P +
Sbjct: 948 RGH-----SLKTLIIDDNVRST------LYGEVFPLE 973
>gnl|CDD|131679 TIGR02631, xylA_Arthro, xylose isomerase, Arthrobacter type. This
model describes a D-xylose isomerase that is also active
as a D-glucose isomerase. It is tetrameric and dependent
on a divalent cation Mg2+, Co2+ or Mn2+ as characterized
in Arthrobacter. Members of this family differ
substantially from the D-xylose isomerases of family
TIGR02630.
Length = 382
Score = 29.0 bits (65), Expect = 7.0
Identities = 31/104 (29%), Positives = 39/104 (37%), Gaps = 23/104 (22%)
Query: 225 PADRNSVVGLKPTVGLTSRAGVIPVLPQHDTIGAISRTVSDAVYLLDVI-------VGFD 277
P DR + GL TVG R D G +RT D V + + V F
Sbjct: 5 PEDRFTF-GLW-TVGWVGR----------DPFGDATRTALDPVEAVHKLAELGAYGVTFH 52
Query: 278 SRDY--EATSEAARYIPVGGYKQFLNENGLKGKRLGVVRNLFSN 319
D R V +K+ L+E GLK V NLFS+
Sbjct: 53 DDDLIPFGAPPQERDQIVRRFKKALDETGLKVPM--VTTNLFSH 94
>gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter
Associated with Antigen Processing, subfamily C. TAP
(Transporter Associated with Antigen Processing) is
essential for peptide delivery from the cytosol into the
lumen of the endoplasmic reticulum (ER), where these
peptides are loaded on major histocompatibility complex
(MHC) I molecules. Loaded MHC I leave the ER and display
their antigenic cargo on the cell surface to cytotoxic T
cells. Subsequently, virus-infected or malignantly
transformed cells can be eliminated. TAP belongs to the
large family of ATP-binding cassette (ABC) transporters,
which translocate a vast variety of solutes across
membranes.
Length = 226
Score = 28.6 bits (64), Expect = 7.9
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 11/52 (21%)
Query: 377 NEYLQELVSS----PV---RSLADVIAFNQNNADMEKTKE----YGQGTFIS 417
++YL VS PV RSL D IA+ + E KE +FIS
Sbjct: 83 HKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFIS 134
>gnl|CDD|206142 pfam13972, TetR, Bacterial transcriptional repressor. This family
of bacterial transcriptional repressors is characterized
by the short approximately 50 amino acid stretch of
residues constituting the helix-turn-helix DNA binding
motif, around the YRFhY motif. The target proteins that
are repressed are involved in the transcriptional
control of multi-drug efflux pumps, pathways for the
biosynthesis of antibiotics, response to osmotic stress
and toxic chemicals, control of catabolic pathways,
differentiation processes, and pathogenicity. The
regulatory network in which TetR itself is involved is
in being released in the presence of tetracycline,
binding to the target operator, and repressing tetA
transcription.
Length = 146
Score = 27.6 bits (62), Expect = 8.6
Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 425 GEKERKAVELMEKLSQDGIEKLMTENELDALVT 457
++E L + GI + + + ELDAL
Sbjct: 64 QRLLEALRAILEGLREAGILR-IDDEELDALAD 95
>gnl|CDD|240538 cd13133, MATE_like_7, Uncharacterized subfamily of the multidrug
and toxic compound extrusion (MATE) proteins. The
integral membrane proteins from the MATE family are
involved in exporting metabolites across the cell
membrane and are responsible for multidrug resistance
(MDR) in many bacteria and animals. A number of family
members are involved in the synthesis of peptidoglycan
components in bacteria.
Length = 438
Score = 28.6 bits (65), Expect = 8.9
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 4/29 (13%)
Query: 3 MGTAINAATSISFSITTVLTLLLFIPING 31
+GT AAT+I FSI + L F+P+ G
Sbjct: 261 LGTTELAATNIVFSINS----LAFLPMIG 285
>gnl|CDD|132853 cd07214, Pat17_isozyme_like, Patatin-like phospholipase of plants.
Pat17 is an isozyme of patatin cloned from Solanum
cardiophyllum. Patatin is a storage protein of the
potato tuber that shows Phospholipase A2 activity (PLA2;
EC 3.1.1.4). Patatin catalyzes the nonspecific
hydrolysis of phospholipids, glycolipids, sulfolipids,
and mono- and diacylglycerols, thereby showing lipid
acyl hydrolase activity. The active site includes an
oxyanion hole with a conserved GGxR motif; it is found
in almost all the members of this family. The catalytic
dyad is formed by a serine and an aspartate. Patatin
belongs to the alpha-beta hydrolase family which is
identified by a characteristic nucleophile elbow with a
consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X
= any residue, and Nu = nucleophile). Patatin-like
phospholipase are included in this group. Members of
this family have also been found in vertebrates.
Length = 349
Score = 28.6 bits (64), Expect = 9.0
Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 5/47 (10%)
Query: 324 STVITAFENHLNTLRQSGATIVDDLEMANVDVISNPGKSGELTAMLA 370
+T++ E L L A I D DVI+ G +TAML
Sbjct: 20 ATILEFLEGKLQELDGPDARIADYF-----DVIAGTSTGGLITAMLT 61
>gnl|CDD|153088 cd01679, RNR_I, Class I ribonucleotide reductase. Ribonucleotide
reductase (RNR) catalyzes the reductive synthesis of
deoxyribonucleotides from their corresponding
ribonucleotides. It provides the precursors necessary
for DNA synthesis. RNRs are separated into three classes
based on their metallocofactor usage. Class I RNRs,
found in eukaryotes, bacteria, and many viruses, use a
diiron-tyrosyl radical. Class II RNRs, found in
bacteria, bacteriophage, algae and archaea, use coenzyme
B12 (adenosylcobalamin, AdoCbl). Class III RNRs, found
in anaerobic bacteria, bacteriophages, and archaea, use
an FeS cluster and S-adenosylmethionine to generate a
glycyl radical. Many organisms have more than one class
of RNR present in their genomes. All three RNRs have a
ten-stranded alpha-beta barrel domain that is
structurally similar to the domain of PFL (pyruvate
formate lyase). Class I RNR is oxygen-dependent and can
be subdivided into classes Ia (eukaryotes, prokaryotes,
viruses and phages) and Ib (which is found in
prokaryotes only). It is a tetrameric enzyme of two
alpha and two beta subunits; this model covers the major
part of the alpha or large subunit, called R1 in class
Ia and R1E in class Ib.
Length = 460
Score = 28.7 bits (65), Expect = 9.4
Identities = 15/63 (23%), Positives = 22/63 (34%), Gaps = 9/63 (14%)
Query: 250 LPQHDTIGAISRTVSDAVYLLDVIVGFDSRDY---EATSEAARYIPVG----GYKQFLNE 302
L T + V AV LD ++ D Y EA R+ +G G +L
Sbjct: 245 LGNFVTFEKLEEVVKLAVRALDNVI--DLNYYPVPEAKRSNMRHRAIGLGVMGLHDYLAL 302
Query: 303 NGL 305
+
Sbjct: 303 LRI 305
>gnl|CDD|153115 cd01057, AAMH_A, Aromatic and Alkene Monooxygenase Hydroxylase,
subunit A, ferritin-like diiron-binding domain.
Aromatic and Alkene Monooxygenase Hydroxylases, subunit
A (AAMH_A). Subunit A of the soluble hydroxylase of
multicomponent, aromatic and alkene monooxygenases are
members of a superfamily of ferritin-like iron-storage
proteins. AAMH exists as a hexamer (an
alpha2-beta2-gamma2 homodimer) with each alpha-subunit
housing one nonheme diiron center embedded in a
four-helix bundle. The N-terminal domain of the alpha-
and noncatalytic beta-subunits possess nearly identical
folds, however, the beta-subunit lacks critical diiron
ligands and a C-terminal domain found in the
alpha-subunit. Methane monooxygenase is a multicomponent
enzyme found in methanotrophic bacteria that catalyzes
the hydroxylation of methane and higher alkenes (as
large as octane). Phenol monooxygenase, found in a
diverse group of bacteria, catalyses the hydroxylation
of phenol, chloro- and methyl-phenol and naphthol. Both
enzyme systems consist of three components: the
hydroxylase, a coupling protein and a reductase. In the
MMO hydroxylase, dioxygen and substrate interact with
the diiron center in a hydrophobic cavity at the active
site. The reductase component and protein coupling
factor provide electrons from NADH for reducing the
oxidized binuclear iron-oxo cluster to its reduced form.
Reaction with dioxygen produces a peroxy-bridged complex
and dehydration leads to the formation of complex Q,
which is thought to be the oxygenating species that
carries out the insertion of an oxygen atom into a C-H
bond of the substrate. The toluene monooxygenase
systems, toluene 2-, 3-, and 4-monooxygenase, are
similar to MMO but with an additional component, a
Rieske-type ferredoxin. The alkene monooxygenase from
Xanthobacter strain Py2 is closely related to aromatic
monooxygenases and catalyzes aromatic monohydroxylation
of benzene, toluene, and phenol. Alkane
omega-hydroxylase (AlkB) and xylene monooxygenase are
members of a distinct class of integral membrane diiron
proteins and are not included in this CD.
Length = 465
Score = 28.4 bits (64), Expect = 9.4
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 1 MLMGTAINAATSISFSITTVLTLLLFIP 28
+ G A+ AA ++ F T T LLF+
Sbjct: 165 FITGDAVEAALALQFVFETAFTNLLFVA 192
>gnl|CDD|221325 pfam11934, DUF3452, Domain of unknown function (DUF3452). This
presumed domain is functionally uncharacterized. This
domain is found in bacteria and eukaryotes. This domain
is typically between 124 to 150 amino acids in length.
This domain is found associated with pfam01858,
pfam01857. This domain has a single completely conserved
residue W that may be functionally important.
Length = 138
Score = 27.7 bits (62), Expect = 9.8
Identities = 9/36 (25%), Positives = 15/36 (41%)
Query: 348 LEMANVDVISNPGKSGELTAMLAGFKIALNEYLQEL 383
L + G LT +L K+ L E+ ++L
Sbjct: 1 LSPPVGGKGTAEGNGVSLTQILRACKLNLVEFFKKL 36
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.134 0.380
Gapped
Lambda K H
0.267 0.0763 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 27,026,900
Number of extensions: 2708115
Number of successful extensions: 2994
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2875
Number of HSP's successfully gapped: 77
Length of query: 528
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 427
Effective length of database: 6,457,848
Effective search space: 2757501096
Effective search space used: 2757501096
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (27.2 bits)