RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 009709
(528 letters)
>1m22_A Peptide amidase, PAM; eleven-stranded beta sheet, covered double
layers of alpha helices on TOP and bottom, hydrolase;
HET: EPE; 1.40A {Stenotrophomonas maltophilia} SCOP:
c.117.1.1 PDB: 1m21_A*
Length = 503
Score = 551 bits (1423), Expect = 0.0
Identities = 209/515 (40%), Positives = 287/515 (55%), Gaps = 40/515 (7%)
Query: 35 FTIIEATIDEIQTAFDQNKLTSTQLVEFYITQIETLN---PRLRSVIEVNPDARSQAEKA 91
F E + ++Q +L ST L + Y+ +I L+ PRLR+VIE+NPDA +A +
Sbjct: 6 FPYAETDVADLQARMTAGELDSTTLTQAYLQRIAALDRTGPRLRAVIELNPDALKEAAER 65
Query: 92 DLARKRNQGRRFLGELHGIPVLLKDTFATKDKLNTSAGSYALVGSVVPRDATVVERLRDA 151
D R+ + R G LHGIP+LLKD + TSAGS AL G P DA +V RLRDA
Sbjct: 66 DRERRDGRLR---GPLHGIPLLLKDNINAAP-MATSAGSLALQG-FRPDDAYLVRRLRDA 120
Query: 152 GAVILGKASLTEWYSFRALGKIPNGWCARAGQAKNPYLPSGDPCGSSSGSAISVAANMVT 211
GAV+LGK +L+EW +FR +GW AR GQ +NPY S PCGSSSGSA++VAAN+ +
Sbjct: 121 GAVVLGKTNLSEWANFRGN-DSISGWSARGGQTRNPYRISHSPCGSSSGSAVAVAANLAS 179
Query: 212 VSLGSETHGSILCPADRNSVVGLKPTVGLTSRAGVIPVLPQHDTIGAISRTVSDAVYLLD 271
V++G+ET GSI+CPA N VVGLKPTVGL SR G+IP+ DT G ++R+V+DA +L
Sbjct: 180 VAIGTETDGSIVCPAAINGVVGLKPTVGLVSRDGIIPISFSQDTAGPMARSVADAAAVLT 239
Query: 272 VIVGFDSRDYEATSEAARYIPVGGYKQFLNENGLKGKRLGVVRNLFSNALNGSTVITAFE 331
I G D D + V Y L+ GL+GKR+G+++ + E
Sbjct: 240 AIAGRDDAD--PATATMPGRAVYDYTARLDPQGLRGKRIGLLQTPLL---KYRGMPPLIE 294
Query: 332 NHLNTLRQSGATIVDDLEMANVDVISNPGKSGELTAMLAGFKIALNEYLQELVSSPVRSL 391
LR++GA +V +E+ N + E T +L FK L Y +P+RSL
Sbjct: 295 QAATELRRAGAVVV-PVELPNQGAWA----EAERTLLLYEFKAGLERYFNTH-RAPLRSL 348
Query: 392 ADVIAFNQNNADMEKTKEYGQGTFISAEKTSGFGEKE-RKAVELMEKLS-QDGIEKLMTE 449
AD+IAFNQ ++ E +GQ + A+ T+G + +A +L+ +GI+ +
Sbjct: 349 ADLIAFNQAHSKQE-LGLFGQELLVEADATAGLADPAYIRARSDARRLAGPEGIDAALAA 407
Query: 450 NELDALVTPGTRVIP---------------VLALGGYPGITVPAGYEGNQMPFGICFGGL 494
++LDALV P T V A+ GYP +TVP G +P G+ F G
Sbjct: 408 HQLDALVAPTTGVAWPIRSEGDDFPGESYSAAAVAGYPSLTVPMGQIDG-LPVGLLFMGT 466
Query: 495 KGTEPKLIEIAYAFEQATMIRRPP-FVTPFWIDER 528
+EPKLIE+AYA+EQ T RRPP F T ID
Sbjct: 467 AWSEPKLIEMAYAYEQRTRARRPPHFDTDALIDAG 501
>1o9p_A Malonamidase E2; malonate; 1.8A {Bradyrhizobium japonicum} SCOP:
c.117.1.1 PDB: 1o9o_A 1obl_A 1och_A 1obk_A 1obi_A
1o9q_A* 1obj_A 1o9n_A 1ock_A 1ocl_A 1ocm_A
Length = 414
Score = 239 bits (613), Expect = 5e-74
Identities = 99/491 (20%), Positives = 167/491 (34%), Gaps = 102/491 (20%)
Query: 41 TIDEIQTAFDQNKLTSTQLVEFYITQIETLNPRLRSVIEVNPDARSQAEKADLARKRNQG 100
++ ++Q + +L+ + IE + + + + AR+QA
Sbjct: 3 SLADLQRRIETGELSPNAAIAQSHAAIEAREKEVHAFVRHDKSARAQA------------ 50
Query: 101 RRFLGELHGIPVLLKDTFATKDKLNTSAGSYALVGSVVPRDATVVERLRDAGAVILGKAS 160
G L GI V +KD T + + T GS G DA VV L+ AGA I+GK +
Sbjct: 51 ---SGPLRGIAVGIKDIIDTAN-MPTEMGSEIYRGWQPRSDAPVVMMLKRAGATIIGKTT 106
Query: 161 LTEWYSFRALGKIPNGWCARAGQAKNPYLPSGDPCGSSSGSAISVAANMVTVSLGSETHG 220
T F A NP+ P G+SSGSA +V A M+ ++LG++T G
Sbjct: 107 TTA---F-ASRD--------PTATLNPHNTGHSPGGASSGSAAAVGAGMIPLALGTQTGG 154
Query: 221 SILCPADRNSVVGLKPTVGLTSRAGVIPVLPQHDTIGAISRTVSDAVYLLDVIVGFDSRD 280
S++ PA +KP+ + GV DT+G D L + G
Sbjct: 155 SVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAMTGRSEFS 214
Query: 281 YEATSEAARYIPVGGYKQFLNENGLKGKRLGVVRNLFSNALNGSTVITAFENHLNTLRQS 340
K R+GVVR F+ A+ + + ++
Sbjct: 215 --GIV------------------PAKAPRIGVVRQEFAGAVE-PAAEQGLQAAIKAAERA 253
Query: 341 GATIVDDLEMANVDVISNPGKSGELTAMLAGFKIALNEYLQELVSSPVRSLADVIAFNQN 400
GA++ I P E I E +LA + + +
Sbjct: 254 GASVQA---------IDLPEAVHEAWR--IHPIIQDFE-----AHR---ALAWEFSEHHD 294
Query: 401 NADMEKTKEYGQGTF-ISAEKTSGFGEKERKAVELMEKLSQDGIEKLMTENELDALVTPG 459
+ T ++ ++ +A + + ++ + ++ +D L+T
Sbjct: 295 EIA-PMLRASLDATVGLTP-------KEYDEARRIGRRGRRE-LGEVF--EGVDVLLTYS 343
Query: 460 TRVIPVLA------------------LGGYPGITVPAGYEGNQMPFGICFGGLKGTEPKL 501
P A L G P + VP G +P G+ G +
Sbjct: 344 A---PGTAPAKALASTGDPRYNRLWTLMGNPCVNVPVLKVGG-LPIGVQVIARFGNDAHA 399
Query: 502 IEIAYAFEQAT 512
+ A+ E A
Sbjct: 400 LATAWFLEDAL 410
>3ip4_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein
complex, ligase, ATP-binding, nucleotide-bindi protein
biosynthesis; 1.90A {Staphylococcus aureus subsp} PDB:
2df4_A 2dqn_A* 2g5h_A 2g5i_A* 2f2a_A
Length = 485
Score = 227 bits (581), Expect = 1e-68
Identities = 92/320 (28%), Positives = 154/320 (48%), Gaps = 34/320 (10%)
Query: 36 TIIEATIDEIQTAFDQNKLTSTQLVEFYITQIETLNPRLRSVIEVNPD-ARSQAEKADLA 94
+I +++ + T K+ + +V+ IE +P ++S + ++ + A +A++ D
Sbjct: 2 SIRYESVENLLTLIKDKKIKPSDVVKDIYDAIEETDPTIKSFLALDKENAIKKAQELDEL 61
Query: 95 RKRNQGRRFLGELHGIPVLLKDTFATKDKLNTSAGSYALVGSVVPRDATVVERLRDAGAV 154
+ ++Q G+L GIP+ +KD T L T+ S L G V ++TV+E+L AV
Sbjct: 62 QAKDQ---MDGKLFGIPMGIKDNIITNG-LETTCASKMLEGFVPIYESTVMEKLHKENAV 117
Query: 155 ILGKASL--------TEWYSFRALGKIPNGWCARAGQAKNPYLPSGDPCGSSSGSAISVA 206
++GK ++ TE F + NP+ P GSS GSA +VA
Sbjct: 118 LIGKLNMDEFAMGGSTETSYF--------------KKTVNPFDHKAVPGGSSGGSAAAVA 163
Query: 207 ANMVTVSLGSETHGSILCPADRNSVVGLKPTVGLTSRAGVIPVLPQHDTIGAISRTVSDA 266
A +V +SLGS+T GSI PA VVG+KPT G SR G++ D IG ++R V D
Sbjct: 164 AGLVPLSLGSDTGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVKDN 223
Query: 267 VYLLDVIVGFDSRDYEATSEAARYIPVGGYKQFLNENGLKGKRLGVVRNLFSNALNGSTV 326
+L+ I G D D +TS + + + +KG ++ + + + V
Sbjct: 224 AIVLEAISGADVND--STSAP---VDDVDFTSEIG-KDIKGLKVALPKEYLGEGVA-DDV 276
Query: 327 ITAFENHLNTLRQSGATIVD 346
A +N + TL+ GA + +
Sbjct: 277 KEAVQNAVETLKSLGAVVEE 296
Score = 42.9 bits (102), Expect = 2e-04
Identities = 21/51 (41%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Query: 463 IPV-LALGGYPGITVPAGYEGNQMPFGICFGGLKGTEPKLIEIAYAFEQAT 512
PV LA G PGI+VP G N P G+ F G E L +AY +E
Sbjct: 429 TPVNLA--GLPGISVPCGQS-NGRPIGLQFIGKPFDEKTLYRVAYQYETQY 476
>3h0l_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein
complex, ligase, protein biosynthesis; HET: ADP; 2.30A
{Aquifex aeolicus} PDB: 3h0m_A 3h0r_A*
Length = 478
Score = 222 bits (567), Expect = 1e-66
Identities = 97/319 (30%), Positives = 149/319 (46%), Gaps = 40/319 (12%)
Query: 37 IIEATIDEIQTAFDQNKLTSTQLVEFYITQIETLNPRLRSVIEVNPD-ARSQAEKADLAR 95
+ + ++ E++ + +++ ++VE + + ++++ I A QAE
Sbjct: 2 LWKKSLSELRELLKRGEVSPKEVVESFYDRYNQTEEKVKAYITPLYGKALKQAESLKERE 61
Query: 96 KRNQGRRFLGELHGIPVLLKDTFATKDKLNTSAGSYALVGSVVPRDATVVERLRDAGAVI 155
L GIP+ +KD + T+ S L V P DATV+ERL+ AGA+I
Sbjct: 62 ---------LPLFGIPIAVKDNILVEG-EKTTCASKILENFVAPYDATVIERLKKAGALI 111
Query: 156 LGKASL--------TEWYSFRALGKIPNGWCARAGQAKNPYLPSGDPCGSSSGSAISVAA 207
+GK +L TE+ +F KNP+ P GSS GSA SVA
Sbjct: 112 VGKTNLDEFAMGSSTEYSAF--------------FPTKNPWDLERVPGGSSGGSAASVAV 157
Query: 208 NMVTVSLGSETHGSILCPADRNSVVGLKPTVGLTSRAGVIPVLPQHDTIGAISRTVSDAV 267
VSLGS+T GSI PA V+G+KPT G SR G++ D IG R D
Sbjct: 158 LSAPVSLGSDTGGSIRQPASFCGVIGIKPTYGRVSRYGLVAFASSLDQIGVFGRRTEDVA 217
Query: 268 YLLDVIVGFDSRDYEATSEAARYIPVGGYKQFLNENGLKGKRLGVVRNLFSNALNGSTVI 327
+L+VI G+D +D +TS +PV + + + +KG ++G+ + F L V
Sbjct: 218 LVLEVISGWDEKD--STSAK---VPVPEWSEEVK-KEVKGLKIGLPKEFFEYELQ-PQVK 270
Query: 328 TAFENHLNTLRQSGATIVD 346
AFEN + L + G I +
Sbjct: 271 EAFENFIKELEKEGFEIKE 289
Score = 43.3 bits (103), Expect = 2e-04
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 463 IPV-LALGGYPGITVPAGYEGNQMPFGICFGGLKGTEPKLIEIAYAFEQAT 512
+P LA G P I++P ++ +P G G E L++I+Y +EQ
Sbjct: 422 VPANLA--GLPAISIPIAWKDG-LPVGGQLIGKHWDETTLLQISYLWEQKF 469
>2dc0_A Probable amidase; structural genomics, NPPSFA, national project on
protein structural and functional analyses; 2.00A
{Thermus thermophilus}
Length = 434
Score = 217 bits (556), Expect = 2e-65
Identities = 86/307 (28%), Positives = 135/307 (43%), Gaps = 36/307 (11%)
Query: 41 TIDEIQTAFDQNKLTSTQLVEFYITQIETLNPRLRSVIEVNPD-ARSQAEKADLARKRNQ 99
+ E + + + T L+E + + + ++ ++ + AR +A +R Q
Sbjct: 2 DLLEAKRLLETGRTTPLALLEEALERAKAFQD-RNALAYLDEEAARKEALALTEELRRGQ 60
Query: 100 GRRFLGELHGIPVLLKDTFATKDKLNTSAGSYALVGSVVPRDATVVERLRDAGAVILGKA 159
R G LHG+P+ +KD F K + T AG+ A + +P +A V RLR+AGA++ K
Sbjct: 61 VR---GPLHGLPLTVKDLFPVKG-MPTRAGTKAPLP-PLPEEARAVRRLREAGALLFAKT 115
Query: 160 SLTEWYSFRALGKIPNGWCARAGQAKNPYLPSGDPCGSSSGSAISVAANMVTVSLGSETH 219
++ E ALG G +N PS GSS GSA++VA + SLG++T
Sbjct: 116 NMHEI----ALGITGENPWT--GPVRNAVDPSRQAGGSSGGSAVAVALGIGLASLGTDTG 169
Query: 220 GSILCPADRNSVVGLKPTVGLTSRAGVIPVLPQHDTIGAISRTVSDAVYLLDVIVGFDSR 279
GSI PA N VVG KP+ G S G +P+ D G ++R+V DA +L +++ G
Sbjct: 170 GSIRIPAGFNGVVGFKPSYGRVSLEGALPLSRSTDHAGPLTRSVRDAHFLTEILAGESIP 229
Query: 280 DYEATSEAARYIPVGGYKQFLNENGLKGKRLGVVRNLFSNALNGSTVITAFENHLNTLRQ 339
G++ GV + L V AF L L
Sbjct: 230 L----------------------EGVQNPVFGVPLDFLEGRLG-VEVRKAFTRLLEDLPA 266
Query: 340 SGATIVD 346
A + +
Sbjct: 267 LRAEVRE 273
Score = 40.2 bits (95), Expect = 0.001
Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Query: 468 LGGYPGITVPAGYEGNQMPFGICFGGLKGTEPKLIEIAYAFEQAT 512
L G P + +P MP G+ G G + K++ + E
Sbjct: 390 LLGVPTLALPFAKVEG-MPVGLQVVGAYGEDGKVLALGGWLEARL 433
>3kfu_E Glutamyl-tRNA(Gln) amidotransferase subunit A; ASPRS, gatcab,
ATP-binding, aminoacyl-tRNA synthetase, ligas
nucleotide-binding, protein biosynthesis, ligase-RNA
comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus}
Length = 471
Score = 214 bits (548), Expect = 7e-64
Identities = 101/314 (32%), Positives = 150/314 (47%), Gaps = 42/314 (13%)
Query: 41 TIDEIQTAFDQNKLTSTQLVEFYITQIETLNPRLRSVIEVNPDARSQAEKADLARKRNQG 100
EI+ + +++ ++ + Y+ +++ L+P L + + +N +AE D
Sbjct: 2 LAHEIRARVARGEVSPLEVAQAYLKRVQELDPGLGAFLSLNERLLEEAEAVDPGLP---- 57
Query: 101 RRFLGELHGIPVLLKDTFATKDKLNTSAGSYALVGSVVPRDATVVERLRDAGAVILGKAS 160
L G+ V +KD AT+ L T+AGS L V P +AT V RL+ GA++LGK +
Sbjct: 58 ------LAGLVVAVKDNIATRG-LRTTAGSRLLENFVPPYEATAVARLKALGALVLGKTN 110
Query: 161 L--------TEWYSFRALGKIPNGWCARAGQAKNPYLPSGDPCGSSSGSAISVAANMVTV 212
L TE +F KNP+ P P GSS GSA ++AA++ +
Sbjct: 111 LDEFGMGSSTEHSAF--------------FPTKNPFDPDRVPGGSSGGSAAALAADLAPL 156
Query: 213 SLGSETHGSILCPADRNSVVGLKPTVGLTSRAGVIPVLPQHDTIGAISRTVSDAVYLLDV 272
+LGS+T GS+ PA V GLKPT G SR G+I D IG ++R+V D L+D
Sbjct: 157 ALGSDTGGSVRQPAAFCGVYGLKPTYGRVSRFGLIAYASSLDQIGPMARSVRDLALLMDA 216
Query: 273 IVGFDSRDYEATSEAARYIPVGGYKQFLNENGLKGKRLGVVRNLFSNALNGSTVITAFEN 332
G D D ATS P +++ L L RLGVVR + N V A E
Sbjct: 217 AAGPDPLD--ATS--LDLPPR--FQEALEGP-LPPLRLGVVREALAG--NSPGVERALEE 267
Query: 333 HLNTLRQSGATIVD 346
L R+ G ++ +
Sbjct: 268 ALKVFRELGLSVRE 281
Score = 44.5 bits (106), Expect = 7e-05
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 6/59 (10%)
Query: 463 IPV-LALGGYPGITVPAGYEGNQMPFGICFGGLKGTEPKLIEIAYAFEQATMI--RRPP 518
+ L G P ++ PAG+EG+ +P G+ G + +L+ A AFE+AT + P
Sbjct: 411 VGANLT--GLPALSFPAGFEGH-LPVGLQLLAPWGEDERLLRAALAFEEATARAHLKAP 466
>3a1k_A Amidase; AS family enzyme, hydrolase; 2.17A {Rhodococcus SP} PDB:
3a1i_A
Length = 521
Score = 212 bits (542), Expect = 2e-62
Identities = 114/523 (21%), Positives = 170/523 (32%), Gaps = 103/523 (19%)
Query: 54 LTSTQLVEFYITQIETLNPRLRSVIEVN-----PDARSQAEKADLARKRNQGRRFLGELH 108
++ L + + P A A G L
Sbjct: 31 PALIDGALGSYDVVDQLYADEATPPTTSREHAVPSASENPLSAWYVTTSIPPTS-DGVLT 89
Query: 109 GIPVLLKDTFATKDKLNTSAGSYALVGSVVPRDATVVERLRDAGAVILGKASL------- 161
G V +KD + GS + G RDATVV RL AGA + GKA
Sbjct: 90 GRRVAIKDNVTVAG-VPMMNGSRTVEGFTPSRDATVVTRLLAAGATVAGKAVCEDLCFSG 148
Query: 162 -TEWYSFRALGKIPNGWCARAGQAKNPYLPSGDPCGSSSGSAISVAANMVTVSLGSETHG 220
+ + G +NP+ + GSS GSA VA V ++G + G
Sbjct: 149 SSFTPAS--------------GPVRNPWDRQREAGGSSGGSAALVANGDVDFAIGGDQGG 194
Query: 221 SILCPADRNSVVGLKPTVGLTSRAGVIPVLPQHDTIGAISRTVSDAVYLLDVIVGFDSRD 280
SI PA VVG KPT GL G P+ D +G I+RTV DA +L VI G D D
Sbjct: 195 SIRIPAAFCGVVGHKPTFGLVPYTGAFPIERTIDHLGPITRTVHDAALMLSVIAGRDGND 254
Query: 281 YEATSEAARYIPVGGYKQFLNENGLKGKRLGVVRNLFSNALNGSTVITAFENHLNTLRQS 340
A + G Y L+ + G R+G+VR F +A++ V A ++L +
Sbjct: 255 --PRQ--ADSVEAGDYLSTLDS-DVDGLRIGIVREGFGHAVSQPEVDDAVRAAAHSLTEI 309
Query: 341 GATIVDDLEMANVDVISNPGKSGELTAMLAGFKIALNEYLQELVSSPVRSLADVIAFNQN 400
G V+ ++ P A IA + + + D + N
Sbjct: 310 G---------CTVEEVNIPWHL---HAFHIWNVIATDG-----GAY---QMLDGNGYGMN 349
Query: 401 NADMEKTKEYGQGTFISAEKTSGFGE--KER-----------------KAVELMEKLSQD 441
+ + + E K KA L+
Sbjct: 350 AEGLYDPELMAHFASRRIQHADALSETVKLVALTGHHGITTLGGASYGKARNLVPLARAA 409
Query: 442 GIEKLMTENELDALVTP---------GTRVIPVLA----------------LGGYPGITV 476
L + D LV P + + + G+P ++V
Sbjct: 410 YDTAL---RQFDVLVMPTLPYVASELPAKDVDRATFITKALGMIANTAPFDVTGHPSLSV 466
Query: 477 PAGYEGNQMPFGICFGGLKGTEPKLIEIAYAFEQAT-MIRRPP 518
PAG +P G+ G + ++ + AFE+ P
Sbjct: 467 PAGLVNG-LPVGMMITGRHFDDATVLRVGRAFEKLRGAFPTPA 508
>2gi3_A Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1272, structural
genomics, joint center for structura genomics, JCSG;
HET: MSE MPD; 1.80A {Thermotoga maritima} SCOP:
c.117.1.1 PDB: 3al0_A*
Length = 476
Score = 206 bits (526), Expect = 1e-60
Identities = 91/320 (28%), Positives = 146/320 (45%), Gaps = 48/320 (15%)
Query: 36 TIIEATIDEIQTAFDQNKLTSTQLVEFYITQIETLNPRLRSVIEVNPD-ARSQAEKADLA 94
++ I+ ++ +L + + I+ L+P +++ I V + + +
Sbjct: 3 IDLDFRKLTIEECLKLSEEEREKLPQLSLETIKRLDPHVKAFISVRENVSVEKK------ 56
Query: 95 RKRNQGRRFLGELHGIPVLLKDTFATKDKLNTSAGSYALVGSVVPRDATVVERLRDAGAV 154
G+ GIPV +KD T + T+ S L DATVV+++++AG V
Sbjct: 57 ----------GKFWGIPVAIKDNILTLG-MRTTCASRILENYESVFDATVVKKMKEAGFV 105
Query: 155 ILGKASL--------TEWYSFRALGKIPNGWCARAGQAKNPYLPSGDPCGSSSGSAISVA 206
++GKA+L TE +F +NP+ P GSS GSA +V+
Sbjct: 106 VVGKANLDEFAMGSSTERSAF--------------FPTRNPWDLERVPGGSSGGSAAAVS 151
Query: 207 ANMVTVSLGSETHGSILCPADRNSVVGLKPTVGLTSRAGVIPVLPQHDTIGAISRTVSDA 266
A MV +LGS+T GS+ PA VVG KPT GL SR G++ D IG I++TV DA
Sbjct: 152 AGMVVAALGSDTGGSVRQPASLCGVVGYKPTYGLVSRYGLVAFASSLDQIGPITKTVRDA 211
Query: 267 VYLLDVIVGFDSRDYEATSEAARYIPVGGYKQFLNENGLKGKRLGVVRNLFSNALNGSTV 326
L+++I G D D AT+ R + + + G+ G + V ++ + + V
Sbjct: 212 AILMEIISGRDEND--ATT-VNRKVD---FLSEIE-EGVSGMKFAVPEEIYEHDIE-EGV 263
Query: 327 ITAFENHLNTLRQSGATIVD 346
FE L L + GA +
Sbjct: 264 SERFEEALKLLERLGAKVER 283
Score = 43.3 bits (103), Expect = 2e-04
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Query: 463 IPV-LALGGYPGITVPAGYEGNQMPFGICFGGLKGTEPKLIEIAYAFEQATMI-RRPPFV 520
IP LA G P I+VP G+ N +P G+ G + + K+ IA A E+ + F
Sbjct: 414 IPANLA--GLPAISVPFGF-SNNLPVGVQVIGRRFADGKVFRIARAIEKNSPYNENGMFP 470
Query: 521 TP 522
P
Sbjct: 471 LP 472
>3a2q_A 6-aminohexanoate-cyclic-dimer hydrolase; alpha/beta fold, nylon
degradation; 1.80A {Arthrobacter SP} PDB: 3a2p_A
Length = 493
Score = 203 bits (520), Expect = 1e-59
Identities = 109/519 (21%), Positives = 181/519 (34%), Gaps = 102/519 (19%)
Query: 53 KLTSTQLVEFYITQIETLNPRLRSVIEVNPD-ARSQAEKADLARKRNQGRRFLGELHGIP 111
+++ T+L+E I ++ +NP + +VI + AR ++E A G G+P
Sbjct: 21 EISRTELLEATIAHVQAVNPEINAVIIPLFEKARRESELAS------------GPFAGVP 68
Query: 112 VLLKDTFATKDKLNTSAGSYAL--VGSVVPRDATVVERLRDAGAVILGKASLTEWYSFRA 169
LLKD ++ + G DA V+R+R AG V+LGK + E
Sbjct: 69 YLLKDLTVVSQGDINTSSIKGMKESGYRADHDAYFVQRMRAAGFVLLGKTNTPEM----- 123
Query: 170 LGKIPNGWCA-----RAGQAKNPYLPSGDPCGSSSGSAISVAANMVTVSLGSETHGSILC 224
G G +NP+ GSS GS +VAA + V+ G++ G++
Sbjct: 124 ------GNQVTTEPEAWGATRNPWNLGRSVGGSSGGSGAAVAAALSPVAHGNDAAGAVRI 177
Query: 225 PADRNSVVGLKPTVGLTSRAGVIP---VLPQHDTIGAISRTVSDAVYLLDVIVGFDSRDY 281
PA VVGLKPT G S ++ + G +R+V D LLDV+ G D
Sbjct: 178 PASVCGVVGLKPTRGRISPGPLVTDSDNVAGAAHEGLFARSVRDIAALLDVVSGHRPGD- 236
Query: 282 EATSEAARYIPVGGYKQFLNENGLKGKRLGVVRNLFSNALNGST-VITAFENHLNTLRQS 340
Y Q ++E R+GV+ + A L
Sbjct: 237 -TFCAPT---ASRPYAQGISE-NPGSLRVGVLTHNPVGDFALDPECAAAARGAAAALAAL 291
Query: 341 GATIVDDLEMANVDVISNPGKSGELTAMLAGFKIALNEYLQELVSSPVRSLADVIAFNQN 400
G + D P G+ + + I ++ + ++I
Sbjct: 292 GHDVNDA----------YPEALGDRSFLKDYSTICDVA-----IAREIERNGELIGRPLT 336
Query: 401 NADMEKT--KEYGQGTFISAEKTSGFGEKERKAVELMEKLSQDGIEKLMTENELDALVTP 458
D+E T + + ++ + V+ + + +E+ E D L+ P
Sbjct: 337 EDDVEWTSWEMVKRADQVTGRAFAA-------CVDELRYYAGK-VERWW-EAGWDLLILP 387
Query: 459 GTRVIPVLA---------------------------------LGGYPGITVPAGYEGNQM 485
+ G P I++P G + M
Sbjct: 388 TVTRQTPEIGELMLAKGTDLEGRQSAFISGSLQMLAFTVPFNVSGQPAISLPIGMSSDGM 447
Query: 486 PFGICFGGLKGTEPKLIEIAYAFEQAT--MIRRPPFVTP 522
P G+ G E L+++A E A + RRP + P
Sbjct: 448 PIGVQIVAAYGREDLLLQVAAQLEGALPWVARRPQLLNP 486
>3ppm_A Fatty-acid amide hydrolase 1; protein-inhibitor complex, FAAH,
oxazole, oxadiazole, endoca degradation, membrane
protein; HET: JG1 1DO; 1.78A {Rattus norvegicus} PDB:
2wj2_A* 3k7f_A* 3k83_A* 3k84_A* 3lj6_A* 3lj7_A 3oj8_A*
2wj1_A* 3pr0_A* 2wap_A* 1mt5_A* 2vya_A* 3qk5_A* 3qj8_A*
3qj9_A* 3qkv_A*
Length = 573
Score = 169 bits (431), Expect = 2e-46
Identities = 93/567 (16%), Positives = 168/567 (29%), Gaps = 139/567 (24%)
Query: 33 DQFTIIEATIDEIQTAFDQNKLTSTQLVEFYITQIETLNPRLRSVIEVNPDARSQAEKAD 92
D ++ + ++ +L+ + Y+ + +N V D
Sbjct: 64 DSEALLTLPLLQLVQKLQSGELSPEAVFFTYLGKAWEVNKGTNCVTSYLTDC-------- 115
Query: 93 LARKRNQGRRFLGELHGIPVLLKDTFATKDKLNTSAGSYALVGSVVPRDATVVERLRDAG 152
+ +Q R G L+G+PV LK+ F+ K ++ G G D VV+ L+ G
Sbjct: 116 -ETQLSQAPR-QGLLYGVPVSLKECFSYKGHD-STLGLSLNEGMPSESDCVVVQVLKLQG 172
Query: 153 AVILGKASLTE---WYS-----FRALGKIPNGWCARAGQAKNPYLPSGDPCGSSSGSAIS 204
AV ++ + Y F GQ NP+ S P GSS G
Sbjct: 173 AVPFVHTNVPQSMFSYDCSNPLF--------------GQTMNPWKSSKSPGGSSGGEGAL 218
Query: 205 VAANMVTVSLGSETHGSILCPADRNSVVGLKPTVGLTSRAGVIPVLPQHDTI----GAIS 260
+ + + LG++ GSI P+ + GLKPT S++G+ + + G ++
Sbjct: 219 IGSGGSPLGLGTDIGGSIRFPSAFCGICGLKPTGNRLSKSGLKGCVYGQTAVQLSLGPMA 278
Query: 261 RTVSDAVYLLDVIVGFDSRDYEATSEAARYIPVGGYKQFLNENGLKGKRLGVVRNLFSNA 320
R V L ++ + T + + R+G
Sbjct: 279 RDVESLALCLKALLCEHLFTLDPTVPPLPFREEV-------YRSSRPLRVGYYETDNYTM 331
Query: 321 LNGSTVITAFENHLNTLRQSGATIVD----DLEMANVDVISN---------------PGK 361
+ + A L +G T++ ++ A ++V+S G
Sbjct: 332 PS-PAMRRALIETKQRLEAAGHTLIPFLPNNIPYA-LEVLSTGGLFSDGGRSFLQNFKGD 389
Query: 362 SGELTAMLAGFKIALNEYLQELVSSPVRSLADVIAFNQNNADMEKTKEYGQGTFISAEKT 421
+ + L + + L+S ++ L +A NN ++
Sbjct: 390 FVDPCLGDLILILRLPSWFKRLLSLLLKPLFPRLAAFLNNMRPRSAEKL----------- 438
Query: 422 SGFGEKERKAVELMEKLSQDGIEKLMTENELDALVTPG-------------------TRV 462
K +E Q + LD L+TP T +
Sbjct: 439 -------WKLQHEIEMYRQS-VIAQWKAMNLDVLLTPMLGPALDLNTPGRATGAVSYTML 490
Query: 463 IPVLALGGYPGITVPAG-------------------------------YEGNQMPFGICF 491
L +P VP G +P +
Sbjct: 491 YNCL---DFPAGVVPVTTVTAEDDAQMELYKGYFGDIWDIILKKAMKNSVG--LPVAVQC 545
Query: 492 GGLKGTEPKLIEIAYAFEQATMIRRPP 518
L E + EQ ++ P
Sbjct: 546 VALPWQEELCLRFMREVEQLMTPQKQP 572
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 72.8 bits (178), Expect = 1e-13
Identities = 95/529 (17%), Positives = 153/529 (28%), Gaps = 200/529 (37%)
Query: 7 INAATSISFSITTVLTLLLFIPINGQDQFTIIEATIDEIQTAFDQNKLTSTQLVEFYITQ 66
A + + + F GQ + +E++ + T LV I
Sbjct: 146 FRAVGEGNAQLVAI-----F---GGQG---NTDDYFEELRDLYQ----TYHVLVGDLIKF 190
Query: 67 I-ETLNPRLRSVIEVNPDARSQAEKADLARKRNQGRRFLGELHGIPVL--LKDTFATKDK 123
ETL+ +R+ ++ G+ +L L++ T DK
Sbjct: 191 SAETLSELIRTTLDAEK--------------------VFT--QGLNILEWLENPSNTPDK 228
Query: 124 --LNTSAGSYALVG-------SVVPR--DATVVERLRD--AGAVILGK--------ASLT 162
L + S L+G V + T E LR GA + A
Sbjct: 229 DYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGE-LRSYLKGATGHSQGLVTAVAIAETD 287
Query: 163 EWYSFRALGK--------IPNGWCARAGQAKNPYLPSGDPCGSSSGSAISVAANMVTVSL 214
W SF + I G R +A P+ S+ +++ SL
Sbjct: 288 SWESFFVSVRKAITVLFFI--GV--RCYEA----YPN-----------TSLPPSILEDSL 328
Query: 215 ----GSETHGSILCPADRNSVVGLKPTVGLTSRAGVIPV-------LPQHDTIGAISRT- 262
G + +L S+ L ++ V LP + IS
Sbjct: 329 ENNEGVPSP--ML------SISNL-------TQEQVQDYVNKTNSHLPAGKQV-EISLVN 372
Query: 263 ------VS---DAVYLLDVIVGFDSRDYEATSEA--ARYIPVGGYKQFLNENGLKGKRLG 311
VS ++Y L++ + R +A S +R IP F +R
Sbjct: 373 GAKNLVVSGPPQSLYGLNLTL----RKAKAPSGLDQSR-IP------F-------SERKL 414
Query: 312 VVRNLFSNALNGSTVITA-FENHLNTLRQSGATIVDDLEMANVDVISNPGKSGELTAMLA 370
N F L + + F H + L + I DL NV + ++
Sbjct: 415 KFSNRF---L----PVASPF--HSHLLVPASDLINKDLVKNNVSF-----NAKDI----- 455
Query: 371 GFKIALNEY-------LQELVSSPVRSLADVIAFNQNNADMEKTKEYGQGTFISAEKTSG 423
+I + Y L+ L S + D I + E T ++ +
Sbjct: 456 --QIPV--YDTFDGSDLRVLSGSISERIVDCII--RLPVKWETTTQFKATHILD------ 503
Query: 424 FGEKERKAVELMEKLSQDGIEKLMTENELDALVTPGTRVIPVLALGGYP 472
FG G+ L N D G RVI L P
Sbjct: 504 FG-----------PGGASGLGVLTHRN-KDGT---GVRVIVAGTLDINP 537
Score = 51.6 bits (123), Expect = 6e-07
Identities = 67/360 (18%), Positives = 107/360 (29%), Gaps = 137/360 (38%)
Query: 1 MLMGTAINAATSI-SF--SITTVLTLLLFIPINGQDQFTIIEATIDEIQTAFDQNKLTST 57
++ AI S SF S+ +T+L FI + + + ++ + + N+ +
Sbjct: 277 LVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPS 336
Query: 58 QLVEFYITQIETLNPRLRSVIEVNPDARSQAEKADLARKRNQGRRFLGELHGIPVLLKDT 117
P L S+ + + Q + K N H +P
Sbjct: 337 --------------PML-SISNLT---QEQVQD--YVNKTNS--------H-LP------ 361
Query: 118 FATKDKLNTSAGSYALVGSVVPRDATVVERLRDAGAVILGKASLTEWYSF-RALGKIPNG 176
+LV VV +G SL Y L K
Sbjct: 362 -------AGKQVEISLVNG---AKNLVV-----SGPP----QSL---YGLNLTLRKA--- 396
Query: 177 WCARAG--QAKNP-----------YLPSGDPCGSSSGSAISVAANMVTVSLGSETHGSIL 223
A +G Q++ P +LP P H +L
Sbjct: 397 -KAPSGLDQSRIPFSERKLKFSNRFLPVASPF-----------------------HSHLL 432
Query: 224 CPADRNSVVGL-KPTVGLTSRAGVIPVLPQHDTI-GAISRTVSDAVY--LLDVI----VG 275
PA L K V ++ IPV +DT G+ R +S ++ ++D I V
Sbjct: 433 VPASDLINKDLVKNNVSFNAKDIQIPV---YDTFDGSDLRVLSGSISERIVDCIIRLPVK 489
Query: 276 FDSRDYEATSEAARYI----PVGGYKQFLNENGLKGKRLGVVRNLFSNALNGS--TVITA 329
++ T A +I P GG LG L +G+ VI A
Sbjct: 490 WE----TTTQFKATHILDFGP-GGA-----------SGLG---VLTHRNKDGTGVRVIVA 530
Score = 47.4 bits (112), Expect = 1e-05
Identities = 65/449 (14%), Positives = 127/449 (28%), Gaps = 183/449 (40%)
Query: 218 THGSILCPADRNSVVGLKPT----VGLTSRAGVIPVLPQHDTIGAISRTVSDAVYLLDVI 273
+HGS+ + + L PT + + +LP+ A + L+
Sbjct: 12 SHGSL-----EHVL--LVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKF 64
Query: 274 VGFDSRDYEATSEAARYIPVGGY------KQFLNEN--------------GLKGKRLGVV 313
+G+ S E S+ ++ V +L N K ++
Sbjct: 65 LGYVSSLVEP-SKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELI 123
Query: 314 RN-------------------LFSNALNGST-VITAF------ENHLNTLR---QSGATI 344
+N LF G+ ++ F +++ LR Q+ +
Sbjct: 124 KNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVL 183
Query: 345 VDDL--EMANV--DVISNPGKSGELTAMLAGFKIALNEYLQE---------LVSSPVRS- 390
V DL A ++I + ++ G I E+L+ L+S P+ S
Sbjct: 184 VGDLIKFSAETLSELIRTTLDAEKVFT--QGLNIL--EWLENPSNTPDKDYLLSIPI-SC 238
Query: 391 -------LAD-VIAFNQNNADMEKTKEYGQGT-----------FISAEKT-SGFGEKERK 430
LA V+ + + Y +G I+ + F RK
Sbjct: 239 PLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRK 298
Query: 431 AVELM-----------------EKLSQD------GIEKLM------TENELDALVT---- 457
A+ ++ + +D G+ M T+ ++ V
Sbjct: 299 AITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNS 358
Query: 458 --PGTRVI-------P---VLALGGYP-----------GITVPAGYEGNQMPFGICFGGL 494
P + + V++ G P P+G + +++PF
Sbjct: 359 HLPAGKQVEISLVNGAKNLVVS--GPPQSLYGLNLTLRKAKAPSGLDQSRIPF------- 409
Query: 495 KGTEPKLIEIAYAFEQATMIRRPPFVTPF 523
+ R+ F F
Sbjct: 410 --------------SE----RKLKFSNRF 420
Score = 43.1 bits (101), Expect = 2e-04
Identities = 57/407 (14%), Positives = 96/407 (23%), Gaps = 187/407 (45%)
Query: 40 ATIDEIQTAFDQNKLTSTQLVEFYITQIETLNP-------------RLRS-----VIEVN 81
T Q +++ F I I NP R+R + E
Sbjct: 1637 KTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETI 1696
Query: 82 PDARSQAEKADLARKRNQGRRFLGELHGIPVLLKDTF-ATKDKLN-TS-------AGSYA 132
D + + EK E++ TF + K L+ T A
Sbjct: 1697 VDGKLKTEK------------IFKEIN--EHSTSYTFRSEKGLLSATQFTQPALTLMEKA 1742
Query: 133 LVGSVVPRDATVVERLRDAGAVILGKASLTEWYSFRALGKIPNGWCARAGQAKNPYLPSG 192
E L+ G + F AG
Sbjct: 1743 AF-----------EDLKSKGLIPADAT-------F-------------AGH--------- 1762
Query: 193 DPCGSSSGSAISVAANMVTVSLG--SETHGSILCPADRNSVVGLKPTVGLTSRAGVIPVL 250
SLG + A L S A V+
Sbjct: 1763 --------------------SLGEYA---------A-------------LASLADVMS-- 1778
Query: 251 PQHDTIGAISRTVSDAVYLLDVIVGFDSRDYEATSEAARYIPVGGYKQFLNENGLKGK-R 309
+ V ++ R G Q G+
Sbjct: 1779 ------------IESLVEVV----------------FYR----GMTMQVAVPRDELGRSN 1806
Query: 310 LGVVRNLFSNALNGSTVITAF--ENHLNTLRQSGATIVDDLEMANVDVISN-PGK----S 362
G++ A+N V +F E + + G +E+ N N + +
Sbjct: 1807 YGMI------AINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNY----NVENQQYVAA 1856
Query: 363 GELTAMLAGFKIALNEYLQELVSSPVRSLADVIAFNQNNADMEKTKE 409
G+L A L + L + + D+I + + +E+ +
Sbjct: 1857 GDLRA-LD----TVTNVLNFIKLQKI----DIIELQK-SLSLEEVEG 1893
>3f1y_A Mannosyl-3-phosphoglycerate synthase; GT-A type
glycosyltransferase, GT-81, mannosyl-3-phosphoglyc
synthase, GDP-mannose, transferas; 2.20A {Rubrobacter
xylanophilus} PDB: 3kia_A* 3o3p_A*
Length = 387
Score = 31.7 bits (71), Expect = 0.62
Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Query: 246 VIPVLPQHDTIGAI---SRTVSDAVYLLDVIVGFDSRDYEATSEAAR 289
V+P DT+G I +++ L+D I+ D+ + T+ A
Sbjct: 99 VLPSRNVADTVGGIIDEIHALNERAPLIDQILVVDADSEDGTAGVAA 145
>1m2t_A MLA, mistletoe lectin I A chain, M; ribosome inactivation, ribosome
inhibitor, hydrolase; HET: NAG FUC ADE; 1.89A {Viscum
album} SCOP: d.165.1.1 PDB: 2r9k_A* 3cef_A* 3d7w_A*
3o5w_A* 1pum_A* 1sz6_A* 1puu_A* 2rg9_A* 1onk_A* 1oql_A*
1ce7_A* 1tfm_A* 1pc8_A* 1yf8_A* 2mll_A*
Length = 254
Score = 30.0 bits (67), Expect = 1.5
Identities = 14/109 (12%), Positives = 31/109 (28%), Gaps = 13/109 (11%)
Query: 108 HGIPVLLKDTFATKDKLNTSAGSYALVGSVVPRDATVVERLRDAGAVILG-KASLTEWYS 166
+ IP+L + T + + LV T+ + ++ +A ++
Sbjct: 35 NNIPLLRQST-----VPVSEGQRFVLVELTNAGGDTITAAIDVTNLYVVAYEAGNQSYFL 89
Query: 167 FRALGKIPNGWCARAGQAKNPYLPSGDPCGSSSGSAISVAANMVTVSLG 215
A + + P+ S A + + LG
Sbjct: 90 SDAPAGAETQDFSGTTSSSQPF-------NGSYPDLERYAGHRDQIPLG 131
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2,
MCSG, structure initiative, midwest center for
structural genomic binding; 2.20A {Oenococcus oeni}
Length = 126
Score = 28.9 bits (65), Expect = 1.8
Identities = 15/79 (18%), Positives = 30/79 (37%), Gaps = 9/79 (11%)
Query: 387 PVRSLADVIAFNQN---NA--DMEK----TKEYGQGTFISAEKTSGFGEKERKAVELMEK 437
VR A N N A ++E G+GTFI+ S + + + + +
Sbjct: 37 SVRETALQEKINPNTVAKAYKELEAQKVIRTIPGKGTFITGNTASVKNSNQNRLLADLSQ 96
Query: 438 LSQDGIEKLMTENELDALV 456
+ + I+ + + +V
Sbjct: 97 VIAELIKSGVKGERIKKIV 115
>1avo_B 11S regulator; proteasome activator, cell adhesion, interferon
induction; 2.80A {Homo sapiens} SCOP: a.24.8.1
Length = 140
Score = 28.3 bits (63), Expect = 3.3
Identities = 11/51 (21%), Positives = 22/51 (43%)
Query: 252 QHDTIGAISRTVSDAVYLLDVIVGFDSRDYEATSEAARYIPVGGYKQFLNE 302
Q ++ + I + S +A ++AA+ VG Y+Q ++E
Sbjct: 51 QEKVFELMTSLHTKLEGFHTQISKYFSERGDAVTKAAKQPHVGDYRQLVHE 101
>3ckj_A Putative uncharacterized protein; mycobacteria, unknown function;
HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB:
3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A
Length = 329
Score = 29.2 bits (65), Expect = 3.6
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 246 VIPVLPQHDTIGAISRTVSDAV-YLLDVIVGFDSRDYEATSEAAR 289
V+P L + DTIG++ ++S V L+D ++ DS + T A
Sbjct: 53 VLPALDEEDTIGSVIDSISPLVDGLVDELIVLDSGSTDDTEIRAV 97
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading
enzyme, criptidase, kinins, hydrolase; 1.96A {Homo
sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A
3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A
2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ...
Length = 990
Score = 29.0 bits (64), Expect = 4.3
Identities = 17/83 (20%), Positives = 30/83 (36%), Gaps = 7/83 (8%)
Query: 29 INGQDQFTIIEATIDEIQTAFDQNKLTSTQLVEFYITQIETLNPRLRSVIEVNPDARSQA 88
I+ Q F + ++T LT +++FY + PR R + V+ AR
Sbjct: 883 ISQQYNFDRDNTEVAYLKT------LTKADIIKFYKEMLAVDAPR-RHKVSVHVLAREMD 935
Query: 89 EKADLARKRNQGRRFLGELHGIP 111
+ Q L + +P
Sbjct: 936 SNPVVGEFPAQNDINLSQAPALP 958
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure
initiative, MI center for structural genomics, MCSG,
unknown function; 1.58A {Listeria innocua}
Length = 125
Score = 27.4 bits (61), Expect = 5.7
Identities = 14/80 (17%), Positives = 33/80 (41%), Gaps = 9/80 (11%)
Query: 387 PVRSLADVIAFNQNNA-----DMEK----TKEYGQGTFISAEKTSGFGEKERKAVELMEK 437
VR + +A N N ++E+ + G G+F++++K K+ A + E+
Sbjct: 39 SVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGSFVTSDKALFDQLKKELADAITER 98
Query: 438 LSQDGIEKLMTENELDALVT 457
++ + + L+
Sbjct: 99 FLEEAKSIGLDDQTAIELLI 118
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 28.3 bits (63), Expect = 7.4
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 12/54 (22%)
Query: 117 TFATKDKLNTSAGSYALVGSVVPRDATVVERLRDAGA-VILGKASL----TEWY 165
TF K L T AG GS+ A V++ L GA V++ + T++Y
Sbjct: 473 TFKDKYVLITGAGK----GSI---GAEVLQGLLQGGAKVVVTTSRFSKQVTDYY 519
>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming),
cytidine 5 triphosphate synthase, ammonia lyase; 2.30A
{Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB:
2ad5_A*
Length = 545
Score = 27.8 bits (63), Expect = 9.1
Identities = 14/42 (33%), Positives = 17/42 (40%), Gaps = 16/42 (38%)
Query: 467 ALGGYPGITVPAGY-----EG----------NQMPF-GICFG 492
L G I VP G+ EG N +P+ GIC G
Sbjct: 340 ILKGLDAILVPGGFGYRGVEGMITTARFARENNIPYLGICLG 381
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.134 0.380
Gapped
Lambda K H
0.267 0.0598 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,041,997
Number of extensions: 511616
Number of successful extensions: 1281
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1209
Number of HSP's successfully gapped: 47
Length of query: 528
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 430
Effective length of database: 3,965,535
Effective search space: 1705180050
Effective search space used: 1705180050
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.2 bits)