RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 009709
(528 letters)
>d2f2aa1 c.117.1.1 (A:1-485) Glutamyl-tRNA(Gln) amidotransferase
subunit A {Staphylococcus aureus [TaxId: 1280]}
Length = 485
Score = 251 bits (641), Expect = 5e-78
Identities = 120/500 (24%), Positives = 212/500 (42%), Gaps = 48/500 (9%)
Query: 36 TIIEATIDEIQTAFDQNKLTSTQLVEFYITQIETLNPRLRSVIEVNPD-ARSQAEKADLA 94
+I +++ + T K+ + +V+ IE +P ++S + ++ + A +A++ D
Sbjct: 2 SIRYESVENLLTLIKDKKIKPSDVVKDIYDAIEETDPTIKSFLALDKENAIKKAQELDEL 61
Query: 95 RKRNQGRRFLGELHGIPVLLKDTFATKDKLNTSAGSYALVGSVVPRDATVVERLRDAGAV 154
+ ++Q G+L GIP+ +KD T L T+ S L G V ++TV+E+L AV
Sbjct: 62 QAKDQ---MDGKLFGIPMGIKDNIITNG-LETTCASKMLEGFVPIYESTVMEKLHKENAV 117
Query: 155 ILGKASLTEWYSFRALGKIPNGWCARAGQAKNPYLPSGDPCGSSSGSAISVAANMVTVSL 214
++GK ++ E+ + + + NP+ P GSS GSA +VAA +V +SL
Sbjct: 118 LIGKLNMDEF------AMGGSTETSYFKKTVNPFDHKAVPGGSSGGSAAAVAAGLVPLSL 171
Query: 215 GSETHGSILCPADRNSVVGLKPTVGLTSRAGVIPVLPQHDTIGAISRTVSDAVYLLDVIV 274
GS+T GSI PA VVG+KPT G SR G++ D IG ++R V D +L+ I
Sbjct: 172 GSDTGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVKDNAIVLEAIS 231
Query: 275 GFDSRDYEATSEAARYIPVGGYKQFLNENGLKGKRLGVVRNLFSNALNGSTVITAFENHL 334
G D D + + + + ++ +KG ++ + + + V A +N +
Sbjct: 232 GADVNDS-----TSAPVDDVDFTSEIGKD-IKGLKVALPKEYLGEGVA-DDVKEAVQNAV 284
Query: 335 NTLRQSGATIVDDLEMANVDVISNPGKSGELTAMLAGFKIALNEYLQELVSSPVRSLADV 394
TL+ GA + ++ + N G + L+ + + +
Sbjct: 285 ETLKSLGAVVE-EVSLPNTKF----GIPSYYVIASSEASSNLSRFDGIRYGYHSKEAHSL 339
Query: 395 IAFNQNNADMEKTKEYGQGTFISAEKTS-GFGEKERKAVELMEKLSQDGIEKLMTENELD 453
+ + KE + F+ S G+ + K + + L ++ +K+ D
Sbjct: 340 EELYKMSRSEGFGKEVKRRIFLGTFALSSGYYDAYYKKSQKVRTLIKNDFDKVF--ENYD 397
Query: 454 ALVTPGTRVIP---------------------VLALGGYPGITVPAGYEGNQMPFGICFG 492
+V P + L G PGI+VP G N P G+ F
Sbjct: 398 VVVGPTAPTTAFNLGEEIDDPLTMYANDLLTTPVNLAGLPGISVPCGQS-NGRPIGLQFI 456
Query: 493 GLKGTEPKLIEIAYAFEQAT 512
G E L +AY +E
Sbjct: 457 GKPFDEKTLYRVAYQYETQY 476
>d2gi3a1 c.117.1.1 (A:1-475) Glutamyl-tRNA(Gln) amidotransferase
subunit A {Thermotoga maritima [TaxId: 2336]}
Length = 475
Score = 224 bits (572), Expect = 5e-68
Identities = 116/500 (23%), Positives = 191/500 (38%), Gaps = 59/500 (11%)
Query: 44 EIQTAFDQNKLTSTQLVEFYITQIETLNPRLRSVIEVNPDARSQAEKADLARKRNQGRRF 103
I+ ++ +L + + I+ L+P +++ I V + + ++
Sbjct: 10 TIEECLKLSEEEREKLPQLSLETIKRLDPHVKAFISVRENV---------SVEKK----- 55
Query: 104 LGELHGIPVLLKDTFATKDKLNTSAGSYALVGSVVPRDATVVERLRDAGAVILGKASLTE 163
G+ GIPV +KD T + T+ S L DATVV+++++AG V++GK
Sbjct: 56 -GKFWGIPVAIKDNILTLG-MRTTCASRILENYESVFDATVVKKMKEAGFVVVGK---AN 110
Query: 164 WYSFRALGKIPNGWCARAGQAKNPYLPSGDPCGSSSGSAISVAANMVTVSLGSETHGSIL 223
F + G GSA +V+A MV +LGS+T GS+
Sbjct: 111 LDEFAMGSSTERSAFFPTRNPWDLERVPGGSS---GGSAAAVSAGMVVAALGSDTGGSVR 167
Query: 224 CPADRNSVVGLKPTVGLTSRAGVIPVLPQHDTIGAISRTVSDAVYLLDVIVGFDSRDYEA 283
PA VVG KPT GL SR G++ D IG I++TV DA L+++I G D D
Sbjct: 168 QPASLCGVVGYKPTYGLVSRYGLVAFASSLDQIGPITKTVRDAAILMEIISGRDEND--- 224
Query: 284 TSEAARYIPVGGYKQFLNENGLKGKRLGVVRNLFSNALNGSTVITAFENHLNTLRQSGAT 343
A + E G+ G + V ++ + + V FE L L + GA
Sbjct: 225 ----ATTVNRKVDFLSEIEEGVSGMKFAVPEEIYEHDIE-EGVSERFEEALKLLERLGAK 279
Query: 344 IVDDLEMANVDVISNPGKSGELTAMLAGFKIALNEYLQELVSSPVRSLADVIAFNQNNAD 403
+ V I + S ++A + + N + V +R +
Sbjct: 280 VER------VK-IPHIKYSVATYYVIAPAEASSNLARFDGVKYGLRIKEKGLREMYMKTR 332
Query: 404 MEKTKEYGQGTFISAEKTSGFGEKERKAVELMEKLSQDGIEKLMTENELDALVTPGTRVI 463
E + + T E + M+ + E ++ DA++TP + V
Sbjct: 333 NVGFGEEVRRRIMIGTFTLSAAYYEAYFNKAMKVRRKISDELNEVLSQYDAILTPTSPVT 392
Query: 464 PVL--------------------ALGGYPGITVPAGYEGNQMPFGICFGGLKGTEPKLIE 503
L G P I+VP G+ N +P G+ G + + K+
Sbjct: 393 AFKIGEIKDPLTYYLMDIFTIPANLAGLPAISVPFGFSNN-LPVGVQVIGRRFADGKVFR 451
Query: 504 IAYAFEQATMIR-RPPFVTP 522
IA A E+ + F P
Sbjct: 452 IARAIEKNSPYNENGMFPLP 471
>d1m22a_ c.117.1.1 (A:) Peptide amidase Pam {Stenotrophomonas
maltophilia [TaxId: 40324]}
Length = 490
Score = 214 bits (545), Expect = 5e-64
Identities = 196/504 (38%), Positives = 268/504 (53%), Gaps = 39/504 (7%)
Query: 35 FTIIEATIDEIQTAFDQNKLTSTQLVEFYITQIETL---NPRLRSVIEVNPDARSQAEKA 91
F E + ++Q +L ST L + Y+ +I L PRLR+VIE+NPDA +A +
Sbjct: 2 FPYAETDVADLQARMTAGELDSTTLTQAYLQRIAALDRTGPRLRAVIELNPDALKEAAER 61
Query: 92 DLARKRNQGRRFLGELHGIPVLLKDTFATKDKLNTSAGSYALVGSVVPRDATVVERLRDA 151
D R+ R G LHGIP+LLKD + TSAGS AL P DA +V RLRDA
Sbjct: 62 DRERRDG---RLRGPLHGIPLLLKDNINAAP-MATSAGSLALQ-GFRPDDAYLVRRLRDA 116
Query: 152 GAVILGKASLTEWYSFRALGKIPNGWCARAGQAKNPYLPSGDPCGSSSGSAISVAANMVT 211
GAV+LGK +L+EW +GW AR GQ +NPY S PCGSSSGSA++VAAN+ +
Sbjct: 117 GAVVLGKTNLSEWA-NFRGNDSISGWSARGGQTRNPYRISHSPCGSSSGSAVAVAANLAS 175
Query: 212 VSLGSETHGSILCPADRNSVVGLKPTVGLTSRAGVIPVLPQHDTIGAISRTVSDAVYLLD 271
V++G+ET GSI+CPA N VVGLKPTVGL SR G+IP+ DT G ++R+V+DA +L
Sbjct: 176 VAIGTETDGSIVCPAAINGVVGLKPTVGLVSRDGIIPISFSQDTAGPMARSVADAAAVLT 235
Query: 272 VIVGFDSRDYEATSEAARYIPVGGYKQFLNENGLKGKRLGVVRNLFSNALNGSTVITAFE 331
I G D D + R + Y L+ GL+GKR+G+++ +I
Sbjct: 236 AIAGRDDADPATATMPGRAVY--DYTARLDPQGLRGKRIGLLQTPLLKYRGMPPLIEQAA 293
Query: 332 NHLNTLRQSGATIVDDLEMANVDVISNPGKSGELTAMLAGFKIALNEYLQELVSSPVRSL 391
L + + A + E T +L FK L Y +P+RSL
Sbjct: 294 TELRRAGAVVVPVELPNQGAWAEA--------ERTLLLYEFKAGLERYFNTH-RAPLRSL 344
Query: 392 ADVIAFNQNNADMEKTKEYGQGTFISAEKTSGFGEKE--RKAVELMEKLSQDGIEKLMTE 449
AD+IAFNQ ++ E +GQ + A+ T+G + R + +GI+ +
Sbjct: 345 ADLIAFNQAHSKQEL-GLFGQELLVEADATAGLADPAYIRARSDARRLAGPEGIDAALAA 403
Query: 450 NELDALVTPGTRVIPVL---------------ALGGYPGITVPAGYEGNQMPFGICFGGL 494
++LDALV P T V + A+ GYP +TVP G +P G+ F G
Sbjct: 404 HQLDALVAPTTGVAWPIRSEGDDFPGESYSAAAVAGYPSLTVPMGQIDG-LPVGLLFMGT 462
Query: 495 KGTEPKLIEIAYAFEQATMIRRPP 518
+EPKLIE+AYA+EQ T RRPP
Sbjct: 463 AWSEPKLIEMAYAYEQRTRARRPP 486
>d1mt5a_ c.117.1.1 (A:) Fatty acid amide hydrolase (oleamide
hydrolase) {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 537
Score = 170 bits (430), Expect = 3e-47
Identities = 81/530 (15%), Positives = 155/530 (29%), Gaps = 79/530 (14%)
Query: 33 DQFTIIEATIDEIQTAFDQNKLTSTQLVEFYITQIETLNPRLRSVIEVNPDARSQAEKAD 92
D ++ + ++ +L+ + Y+ + +N V D
Sbjct: 34 DSEALLTLPLLQLVQKLQSGELSPEAVFFTYLGKAWEVNKGTNCVTSYLTDC-------- 85
Query: 93 LARKRNQGRRFLGELHGIPVLLKDTFATKDKLNTSAGSYALVGSVVPRDATVVERLRDAG 152
+ +Q R G L+G+PV LK+ F+ K +++ G G D VV+ L+ G
Sbjct: 86 -ETQLSQAPR-QGLLYGVPVSLKECFSYKG-HDSTLGLSLNEGMPSESDCVVVQVLKLQG 142
Query: 153 AVILGKASLTEWYSFRALGKIPNGWCARAGQAKNPYLPSGDPCGSSSGSAISVAANMVTV 212
AV ++ + G NP+ S P GSS G + + +
Sbjct: 143 AVPFVHTNVPQSMLSFDCSNPLFGQT------MNPWKSSKSPGGSSGGEGALIGSGGSPL 196
Query: 213 SLGSETHGSILCPADRNSVVGLKPTVGLTSRAGVIPVLPQ----HDTIGAISRTVSDAVY 268
LG++ GSI P+ + GLKPT S++G+ + ++G ++R V
Sbjct: 197 GLGTDIGGSIRFPSAFCGICGLKPTGNRLSKSGLKGCVYGQTAVQLSLGPMARDVESLAL 256
Query: 269 LLDVIVGFDSRDYEATSEAARYIPVGGYKQFLNENGLKGKRLGVVRNLFSNALNGSTVIT 328
L ++ + T + + R+G S +
Sbjct: 257 CLKALLCEHLFTLDPTVPPLPFREE-------VYRSSRPLRVGYYETDNYT--MPSPAMR 307
Query: 329 AFENHLNTLRQSGATIVDDLEMANVDVISNPGKSGELTAMLAGFKIALNEYLQELVSSPV 388
++ + N+ +G L + G + L + + V +
Sbjct: 308 RALIETKQRLEAAGHTLIPFLPNNIPYALEVLSAGGLFS--DGGRSFLQNFKGDFVDPCL 365
Query: 389 RSLADVIAFNQNNADMEKTKEYGQGTFISAEKTSGFGEKERKAVELMEKLS--QDGIEKL 446
L ++ + ++A S K +L ++ + +
Sbjct: 366 GDLILILRLPSWFKRLLSLLLKPLFPRLAAFLNSMRPRSAEKLWKLQHEIEMYRQSVIAQ 425
Query: 447 MTENELDALVTPGTRVIPVLA----------------LGGYPGITVPAGYEGNQ------ 484
LD L+TP L +P VP +
Sbjct: 426 WKAMNLDVLLTPMLGPALDLNTPGRATGAISYTVLYNCLDFPAGVVPVTTVTAEDDAQME 485
Query: 485 -----------------------MPFGICFGGLKGTEPKLIEIAYAFEQA 511
+P + L E + EQ
Sbjct: 486 LYKGYFGDIWDIILKKAMKNSVGLPVAVQCVALPWQEELCLRFMREVEQL 535
>d1ocka_ c.117.1.1 (A:) Malonamidase E2 {Bradyrhizobium japonicum
[TaxId: 375]}
Length = 412
Score = 104 bits (259), Expect = 9e-25
Identities = 57/241 (23%), Positives = 91/241 (37%), Gaps = 28/241 (11%)
Query: 41 TIDEIQTAFDQNKLTSTQLVEFYITQIETLNPRLRSVIEVNPDARSQAEKADLARKRNQG 100
++ ++Q + +L+ + IE + + + + AR+QA
Sbjct: 3 SLADLQRRIETGELSPNAAIAQSHAAIEAREKEVHAFVRHDKSARAQA------------ 50
Query: 101 RRFLGELHGIPVLLKDTFATKDKLNTSAGSYALVGSVVPRDATVVERLRDAGAVILGKAS 160
G L GI V +KD T + + T GS G DA VV L+ AGA I+GK +
Sbjct: 51 ---SGPLRGIAVGIKDIIDTAN-MPTEMGSEIYRGWQPRSDAPVVMMLKRAGATIIGKTT 106
Query: 161 LTEWYSFRALGKIPNGWCARAGQAKNPYLPSGDPCGSSSGSAISVAANMVTVSLGSETHG 220
T + + N G GSA +V A M+ ++LG++T G
Sbjct: 107 TTAFA---------SRDPTATLNPHNTGHSPGGSSS---GSAAAVGAGMIPLALGTQTGG 154
Query: 221 SILCPADRNSVVGLKPTVGLTSRAGVIPVLPQHDTIGAISRTVSDAVYLLDVIVGFDSRD 280
S++ PA +KP+ + GV DT+G D L + G
Sbjct: 155 SVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAMTGRSEFS 214
Query: 281 Y 281
Sbjct: 215 G 215
Score = 59.4 bits (142), Expect = 5e-10
Identities = 15/77 (19%), Positives = 24/77 (31%), Gaps = 16/77 (20%)
Query: 450 NELDALVTPGTRVIP---------------VLALGGYPGITVPAGYEGNQMPFGICFGGL 494
+D L+T + L G P + VP G +P G+
Sbjct: 334 EGVDVLLTYSAPGTAPAKALASTGDPRYNRLWTLMGNPCVNVPVLKVGG-LPIGVQVIAR 392
Query: 495 KGTEPKLIEIAYAFEQA 511
G + + A+ E A
Sbjct: 393 FGNDAHALATAWFLEDA 409
>d1v7ra_ c.51.4.1 (A:) XTP pyrophosphatase {Archaeon Pyrococcus
horikoshii [TaxId: 53953]}
Length = 186
Score = 27.9 bits (61), Expect = 2.3
Identities = 14/54 (25%), Positives = 22/54 (40%)
Query: 357 SNPGKSGELTAMLAGFKIALNEYLQELVSSPVRSLADVIAFNQNNADMEKTKEY 410
SNPGK E+ L F I + + E L DV+ F + + + +
Sbjct: 8 SNPGKVREVANFLGTFGIEIVQLKHEYPEIQAEKLEDVVDFGISWLKGKVPEPF 61
>d1m2ta_ d.165.1.1 (A:) Mistletoe lectin I A-chain {European
mistletoe (Viscum album) [TaxId: 3972]}
Length = 248
Score = 26.0 bits (57), Expect = 9.5
Identities = 16/113 (14%), Positives = 29/113 (25%), Gaps = 21/113 (18%)
Query: 108 HGIPVLLKDTFATKDKLNTSAGSYALVGSVVPRDATVVERLRDAGAVILGKASLTEWYSF 167
+ IP+L + T + + LV T+ + ++ + + Y
Sbjct: 35 NNIPLLRQSTVPV-----SEGQRFVLVELTNAGGDTITAAIDVTNLYVVAYEAGNQSYFL 89
Query: 168 RALGKIPNGWCARAGQAKNPYLPSGD-----PCGSSSGSAISVAANMVTVSLG 215
A SG P S A + + LG
Sbjct: 90 S-----------DAPAGAETQDFSGTTSSSQPFNGSYPDLERYAGHRDQIPLG 131
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.134 0.380
Gapped
Lambda K H
0.267 0.0506 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,868,055
Number of extensions: 86861
Number of successful extensions: 216
Number of sequences better than 10.0: 1
Number of HSP's gapped: 192
Number of HSP's successfully gapped: 10
Length of query: 528
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 439
Effective length of database: 1,185,626
Effective search space: 520489814
Effective search space used: 520489814
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.5 bits)