Your job contains 1 sequence.
>009712
MKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQL
AVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMG
PVLSIIKNSMQNAANFEVIAQKLKEERMEVASEETEVLVLDTSSNLKIPNVGRESVDGVD
ALVGTTMPHPPAYTQLKQEPPKVGSSVAELDRNGLGSFAHPGEAIASENKEATHISTLSS
SGQSRDLNACKSPSPRVTEAAVQALKKPNRGFGALLGNPKRKFDGEKKDKEAMKLEQIKS
SVNLPFHSIFARDEQLKPVDVMKSEPNKPDLPFPSSFGSGEQTKPIIEESNRVTVVSQSE
EPAPAARPDTEDIITLEDDIDEEEQNLGNLETASAPGEDGSAGSALEMGKQDETMSLSDL
STSFQECFHSANNNRKPGKPERSEEPSGFLQLKPFDFEAARKQIEFGEDAKEKSAGVDGN
KRKPVNSGDKKKVSAVDQAQKDDGTKELSQGRRRSAFPATGNRSATFR
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 009712
(528 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
MGI|MGI:1355322 - symbol:Exosc10 "exosome component 10" s... 182 9.9e-14 2
UNIPROTKB|E1C525 - symbol:EXOSC10 "Uncharacterized protei... 201 1.0e-13 2
UNIPROTKB|Q01780 - symbol:EXOSC10 "Exosome component 10" ... 183 3.5e-12 2
ZFIN|ZDB-GENE-040426-781 - symbol:exosc10 "exosome compon... 194 9.7e-12 1
UNIPROTKB|A7E323 - symbol:EXOSC10 "Uncharacterized protei... 188 3.0e-11 1
UNIPROTKB|E1BMZ5 - symbol:EXOSC10 "Uncharacterized protei... 188 4.3e-11 1
UNIPROTKB|F1PI20 - symbol:EXOSC10 "Uncharacterized protei... 186 7.3e-11 1
UNIPROTKB|B4DKG8 - symbol:EXOSC10 "Exosome component 10" ... 183 1.0e-10 1
RGD|2323986 - symbol:LOC100366273 "rCG30986-like" species... 184 1.1e-10 1
UNIPROTKB|D4A1X2 - symbol:LOC100366273 "Protein LOC100366... 184 1.2e-10 1
UNIPROTKB|F1RHR9 - symbol:EXOSC10 "Uncharacterized protei... 183 1.5e-10 1
FB|FBgn0038269 - symbol:Rrp6 "Rrp6" species:7227 "Drosoph... 171 3.1e-09 1
WB|WBGene00000796 - symbol:crn-3 species:6239 "Caenorhabd... 172 4.9e-09 2
DICTYBASE|DDB_G0271572 - symbol:exosc10 "exosome componen... 148 8.2e-06 3
POMBASE|SPAC1F3.01 - symbol:rrp6 "exosome 3'-5' exoribonu... 140 2.7e-05 2
TAIR|locus:504955936 - symbol:AT2G32415 species:3702 "Ara... 128 0.00015 1
>MGI|MGI:1355322 [details] [associations]
symbol:Exosc10 "exosome component 10" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000176 "nuclear exosome (RNase complex)" evidence=IEA]
[GO:0000178 "exosome (RNase complex)" evidence=ISO] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] [GO:0000460 "maturation of 5.8S rRNA"
evidence=ISO] [GO:0000956 "nuclear-transcribed mRNA catabolic
process" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003824
"catalytic activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0004527 "exonuclease activity" evidence=IEA]
[GO:0004532 "exoribonuclease activity" evidence=ISO] [GO:0005622
"intracellular" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005730 "nucleolus" evidence=ISO;TAS] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0008408 "3'-5'
exonuclease activity" evidence=IEA] [GO:0009048 "dosage
compensation by inactivation of X chromosome" evidence=IMP]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0035327
"transcriptionally active chromatin" evidence=ISO] [GO:0044237
"cellular metabolic process" evidence=IEA] [GO:0071028 "nuclear
mRNA surveillance" evidence=ISO] [GO:0071034 "CUT catabolic
process" evidence=ISO] [GO:0071035 "nuclear
polyadenylation-dependent rRNA catabolic process" evidence=ISO]
[GO:0071044 "histone mRNA catabolic process" evidence=ISO]
[GO:0071048 "nuclear retention of unspliced pre-mRNA at the site of
transcription" evidence=ISO] InterPro:IPR002121 InterPro:IPR002562
InterPro:IPR010997 InterPro:IPR012337 InterPro:IPR012588
Pfam:PF00570 Pfam:PF01612 Pfam:PF08066 PROSITE:PS50967
SMART:SM00341 SMART:SM00474 MGI:MGI:1355322 GO:GO:0005737
GO:GO:0005730 GO:GO:0000184 GO:GO:0000166 GO:GO:0003723
GO:GO:0090305 SUPFAM:SSF53098 GO:GO:0000178 GO:GO:0071035
GO:GO:0008408 GO:GO:0035327 GO:GO:0071044 SUPFAM:SSF47819
GO:GO:0009048 GO:GO:0000460 GO:GO:0000176 GO:GO:0071034 CTD:5394
eggNOG:COG0349 HOGENOM:HOG000001579 HOVERGEN:HBG051524 KO:K12591
OMA:GNKSMSF OrthoDB:EOG4X6C7P ChiTaRS:EXOSC10 GO:GO:0004532
GO:GO:0071048 EMBL:AF091392 EMBL:AF091505 EMBL:AF091506
EMBL:AF092074 EMBL:AF092075 EMBL:AF092076 EMBL:AF092077
EMBL:AF092078 EMBL:AF092079 EMBL:AF092080 EMBL:AF092081
EMBL:AF092082 EMBL:AF092083 EMBL:AL606969 EMBL:AL713995
IPI:IPI00342382 RefSeq:NP_057908.2 UniGene:Mm.266635
ProteinModelPortal:P56960 SMR:P56960 STRING:P56960
PhosphoSite:P56960 PaxDb:P56960 PRIDE:P56960
Ensembl:ENSMUST00000017408 GeneID:50912 KEGG:mmu:50912
GeneTree:ENSGT00390000015408 InParanoid:B1ARY9 NextBio:307899
Bgee:P56960 CleanEx:MM_EXOSC10 Genevestigator:P56960
GermOnline:ENSMUSG00000017264 Uniprot:P56960
Length = 887
Score = 182 (69.1 bits), Expect = 9.9e-14, Sum P(2) = 9.9e-14
Identities = 36/80 (45%), Positives = 52/80 (65%)
Query: 19 LTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADD 78
L V++RS D+C + + K + ++ SYL +Y Q LN+QQL L WRD AR +D
Sbjct: 466 LQVVWQRSRDICLKKFVKPIFTDESYLELYRKQKKHLNSQQLTAFQLLFAWRDKTARRED 525
Query: 79 ESTGYVLPNRTLIEIAKQLP 98
ES GYVLPN +++IA++LP
Sbjct: 526 ESYGYVLPNHMMLKIAEELP 545
Score = 79 (32.9 bits), Expect = 9.9e-14, Sum P(2) = 9.9e-14
Identities = 54/207 (26%), Positives = 79/207 (38%)
Query: 315 QLKPVDVMKSEPNK-----PDLPFPSSFGSGEQTKP---IIEESNRVTVVSQ---SEEPA 363
Q K ++M+S N P L + + P I E SNR + SQ +EP
Sbjct: 678 QKKAQNIMQSFENPFRMFLPSLEHKAHISQAAKFDPSSKIYEISNRWKLASQVQVQKEPK 737
Query: 364 PAARPXXXXXXXXXXXXXXXXQNLGNLETASAPGEDGSAGSALEMGKQDETMSLSDLSTS 423
A + G LE A + +ALE + + SDL T
Sbjct: 738 EATKKKVAEQTAAREEAKEEAA-AGVLEQAIPVRQQ----AALENATKKRERATSDLRTI 792
Query: 424 FQECFHSANNNRKPGKPERSEEPSGFLQLKPFDFEAARKQIEFGEDAKEK-SAGVDGNKR 482
Q+ K K + +P G P+D+ + + F D+K K S+ D NK
Sbjct: 793 EQK---QEKKRLKSSKKAKDPDPPG-KDFSPYDYSQSDFRA-FAGDSKSKPSSQFDPNKL 847
Query: 483 KPVNSGDKKKVSAVDQAQKDDGTKELS 509
P SG KK V A + ++ G K +S
Sbjct: 848 AP--SG-KKGVGA-KKCKQSVGNKSMS 870
>UNIPROTKB|E1C525 [details] [associations]
symbol:EXOSC10 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000176 "nuclear exosome (RNase complex)" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008408 "3'-5'
exonuclease activity" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0000460 "maturation of 5.8S rRNA"
evidence=IEA] [GO:0004532 "exoribonuclease activity" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0009048 "dosage compensation by inactivation of X
chromosome" evidence=IEA] [GO:0035327 "transcriptionally active
chromatin" evidence=IEA] [GO:0071034 "CUT catabolic process"
evidence=IEA] [GO:0071035 "nuclear polyadenylation-dependent rRNA
catabolic process" evidence=IEA] [GO:0071044 "histone mRNA
catabolic process" evidence=IEA] [GO:0071048 "nuclear retention of
unspliced pre-mRNA at the site of transcription" evidence=IEA]
InterPro:IPR002121 InterPro:IPR002562 InterPro:IPR010997
InterPro:IPR012337 InterPro:IPR012588 Pfam:PF00570 Pfam:PF01612
Pfam:PF08066 PROSITE:PS50967 SMART:SM00341 SMART:SM00474
GO:GO:0005737 GO:GO:0005730 GO:GO:0000184 GO:GO:0000166
GO:GO:0003676 SUPFAM:SSF53098 GO:GO:0071035 GO:GO:0008408
GO:GO:0035327 GO:GO:0071044 SUPFAM:SSF47819 GO:GO:0009048
GO:GO:0000460 GO:GO:0000176 GO:GO:0071034 CTD:5394 KO:K12591
OMA:GNKSMSF GO:GO:0004532 GO:GO:0071048
GeneTree:ENSGT00390000015408 EMBL:AADN02040751 IPI:IPI00588624
RefSeq:NP_001012748.1 UniGene:Gga.2286 ProteinModelPortal:E1C525
Ensembl:ENSGALT00000004879 GeneID:419454 KEGG:gga:419454
NextBio:20822508 Uniprot:E1C525
Length = 910
Score = 201 (75.8 bits), Expect = 1.0e-13, Sum P(2) = 1.0e-13
Identities = 42/82 (51%), Positives = 53/82 (64%)
Query: 17 TPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARA 76
T L V++RS D+C + Y K L S+ SYL +Y Q LN QQLA L WRD AR
Sbjct: 482 TQLKVVWQRSRDICLKKYIKPLFSDESYLELYRRQKKHLNTQQLAAFRLLFSWRDKTARQ 541
Query: 77 DDESTGYVLPNRTLIEIAKQLP 98
+DES GYVLPN L++IA++LP
Sbjct: 542 EDESIGYVLPNHMLLKIAEELP 563
Score = 59 (25.8 bits), Expect = 1.0e-13, Sum P(2) = 1.0e-13
Identities = 18/75 (24%), Positives = 36/75 (48%)
Query: 435 RKPGKPERSEEPSGFLQLKPFDFEAARKQIEFGEDAKEKSAGVDGNKRKPVNSGDKKKVS 494
++P ++ EE Q PFD+ ++ F +K K + V + + V +G KK +
Sbjct: 823 KRPKASQQPEELEAPKQFTPFDYSKFNFKV-FAGSSKSKQS-VQFDPARQVYTG--KKFA 878
Query: 495 AVDQAQKDDGTKELS 509
++ Q+ G + +S
Sbjct: 879 GANKLQQPAGNRSMS 893
>UNIPROTKB|Q01780 [details] [associations]
symbol:EXOSC10 "Exosome component 10" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000176
"nuclear exosome (RNase complex)" evidence=IEA] [GO:0008408 "3'-5'
exonuclease activity" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0009048 "dosage compensation by inactivation of X
chromosome" evidence=IEA] [GO:0071044 "histone mRNA catabolic
process" evidence=IMP] [GO:0000178 "exosome (RNase complex)"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0000460 "maturation of 5.8S rRNA"
evidence=IMP] [GO:0071035 "nuclear polyadenylation-dependent rRNA
catabolic process" evidence=IMP] [GO:0071034 "CUT catabolic
process" evidence=IMP] [GO:0071048 "nuclear retention of unspliced
pre-mRNA at the site of transcription" evidence=IMP] [GO:0035327
"transcriptionally active chromatin" evidence=IMP] [GO:0004532
"exoribonuclease activity" evidence=IDA] [GO:0000956
"nuclear-transcribed mRNA catabolic process" evidence=IMP]
[GO:0071028 "nuclear mRNA surveillance" evidence=IMP] [GO:0005634
"nucleus" evidence=IDA] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=IMP]
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR002121
InterPro:IPR002562 InterPro:IPR010997 InterPro:IPR012337
InterPro:IPR012588 Pfam:PF00570 Pfam:PF01612 Pfam:PF08066
PROSITE:PS50967 SMART:SM00341 SMART:SM00474 GO:GO:0005737
GO:GO:0005730 GO:GO:0000184 GO:GO:0000166 EMBL:CH471130
GO:GO:0003723 SUPFAM:SSF53098 GO:GO:0000178 GO:GO:0071035
EMBL:AJ300188 GO:GO:0008408 GO:GO:0035327 GO:GO:0071044
SUPFAM:SSF47819 GO:GO:0009048 GO:GO:0000460 GO:GO:0000176
GO:GO:0071034 EMBL:X66113 EMBL:L01457 EMBL:AL109811 EMBL:BC039901
EMBL:BC073788 IPI:IPI00009464 IPI:IPI00220336 PIR:A43920 PIR:JH0796
RefSeq:NP_001001998.1 RefSeq:NP_002676.1 UniGene:Hs.632368 PDB:2CPR
PDB:3SAF PDB:3SAG PDB:3SAH PDBsum:2CPR PDBsum:3SAF PDBsum:3SAG
PDBsum:3SAH ProteinModelPortal:Q01780 SMR:Q01780 IntAct:Q01780
MINT:MINT-1143843 STRING:Q01780 PhosphoSite:Q01780 DMDM:8928564
SWISS-2DPAGE:Q01780 PaxDb:Q01780 PRIDE:Q01780 DNASU:5394
Ensembl:ENST00000304457 Ensembl:ENST00000376936 GeneID:5394
KEGG:hsa:5394 UCSC:uc001asa.3 UCSC:uc001asb.3 CTD:5394
GeneCards:GC01M011126 HGNC:HGNC:9138 HPA:HPA028470 HPA:HPA028484
MIM:605960 neXtProt:NX_Q01780 PharmGKB:PA33464 eggNOG:COG0349
HOGENOM:HOG000001579 HOVERGEN:HBG051524 InParanoid:Q01780 KO:K12591
OMA:GNKSMSF OrthoDB:EOG4X6C7P PhylomeDB:Q01780 ChiTaRS:EXOSC10
EvolutionaryTrace:Q01780 GenomeRNAi:5394 NextBio:20912
ArrayExpress:Q01780 Bgee:Q01780 CleanEx:HS_EXOSC10
Genevestigator:Q01780 GermOnline:ENSG00000171824 GO:GO:0004532
GO:GO:0071048 Uniprot:Q01780
Length = 885
Score = 183 (69.5 bits), Expect = 3.5e-12, Sum P(2) = 3.5e-12
Identities = 39/97 (40%), Positives = 57/97 (58%)
Query: 2 KIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLA 61
K++L M + L V++RS D+C + + K + ++ SYL +Y Q LN QQL
Sbjct: 450 KMRLE-MWERGNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNTQQLT 508
Query: 62 VVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 98
L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 509 AFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 545
Score = 63 (27.2 bits), Expect = 3.5e-12, Sum P(2) = 3.5e-12
Identities = 27/95 (28%), Positives = 42/95 (44%)
Query: 434 NRKPGKPERSEEPSGFLQLKPFDFEAARKQIEFGEDAKEKSAGVDGNKRKPVNSGDKKKV 493
++KP PE E+ + P+D+ + + G + S+ D NK+ P SG KK
Sbjct: 802 SKKPKDPEPPEK-----EFTPYDYSQSDFKAFAGNSKSKVSSQFDPNKQTP--SG--KKC 852
Query: 494 SAVDQAQKDDGTKELSQGRRRSAFPATGNRSATFR 528
A + ++ G K +S FP TG FR
Sbjct: 853 IAAKKIKQSVGNKSMS-------FP-TGKSDRGFR 879
>ZFIN|ZDB-GENE-040426-781 [details] [associations]
symbol:exosc10 "exosome component 10" species:7955
"Danio rerio" [GO:0000176 "nuclear exosome (RNase complex)"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0044237 "cellular metabolic process"
evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0006139
"nucleobase-containing compound metabolic process" evidence=IEA]
InterPro:IPR002121 InterPro:IPR002562 InterPro:IPR010997
InterPro:IPR012337 InterPro:IPR012588 Pfam:PF00570 Pfam:PF01612
Pfam:PF08066 PROSITE:PS50967 SMART:SM00341 SMART:SM00474
ZFIN:ZDB-GENE-040426-781 GO:GO:0000166 GO:GO:0003676 GO:GO:0006396
SUPFAM:SSF53098 GO:GO:0008408 SUPFAM:SSF47819 GO:GO:0000176
CTD:5394 KO:K12591 OMA:GNKSMSF GeneTree:ENSGT00390000015408
EMBL:CR318666 IPI:IPI00860469 RefSeq:NP_957383.2 UniGene:Dr.75500
Ensembl:ENSDART00000137410 GeneID:394064 KEGG:dre:394064
NextBio:20815021 ArrayExpress:F1Q5Q7 Bgee:F1Q5Q7 Uniprot:F1Q5Q7
Length = 899
Score = 194 (73.4 bits), Expect = 9.7e-12, P = 9.7e-12
Identities = 42/129 (32%), Positives = 70/129 (54%)
Query: 17 TPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARA 76
T + +V+ +S D+ + Y K + +E+SY+ +Y Q N QQLA + WRD +AR
Sbjct: 462 TLIQQVWTKSRDLSLKKYVKPIFTEDSYMELYRKQKKSFNTQQLAAFRLMYAWRDKLARE 521
Query: 77 DDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAA-N 135
+DESTGY+LPN +++IA +LP + + + + + +IK + +
Sbjct: 522 EDESTGYILPNHMMMKIADELPKEPQGIIACCNPTPPLVRQQINELHQLIKQARETPLLK 581
Query: 136 FEVIAQKLK 144
EV+AQK K
Sbjct: 582 AEVVAQKRK 590
>UNIPROTKB|A7E323 [details] [associations]
symbol:EXOSC10 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008408 "3'-5' exonuclease activity" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000176 "nuclear exosome (RNase
complex)" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR002121 InterPro:IPR002562
InterPro:IPR010997 InterPro:IPR012337 InterPro:IPR012588
Pfam:PF00570 Pfam:PF01612 Pfam:PF08066 PROSITE:PS50967
SMART:SM00341 SMART:SM00474 GO:GO:0000166 GO:GO:0003676
GO:GO:0006396 SUPFAM:SSF53098 GO:GO:0008408 SUPFAM:SSF47819
GO:GO:0000176 CTD:5394 eggNOG:COG0349 HOGENOM:HOG000001579
HOVERGEN:HBG051524 KO:K12591 OrthoDB:EOG4X6C7P
GeneTree:ENSGT00390000015408 EMBL:DAAA02042967 EMBL:BC151674
IPI:IPI00904680 RefSeq:NP_001095656.1 UniGene:Bt.59475 SMR:A7E323
STRING:A7E323 Ensembl:ENSBTAT00000057296 GeneID:535340
KEGG:bta:535340 NextBio:20876706 Uniprot:A7E323
Length = 702
Score = 188 (71.2 bits), Expect = 3.0e-11, P = 3.0e-11
Identities = 40/97 (41%), Positives = 59/97 (60%)
Query: 2 KIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLA 61
K++L + +E T L V++RS D+C + + K + ++ SYL +Y Q LN QQL
Sbjct: 450 KMRLELWERGNEQP-TQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNTQQLT 508
Query: 62 VVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 98
L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 509 AFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 545
>UNIPROTKB|E1BMZ5 [details] [associations]
symbol:EXOSC10 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071048 "nuclear retention of unspliced pre-mRNA at the
site of transcription" evidence=IEA] [GO:0071044 "histone mRNA
catabolic process" evidence=IEA] [GO:0071035 "nuclear
polyadenylation-dependent rRNA catabolic process" evidence=IEA]
[GO:0071034 "CUT catabolic process" evidence=IEA] [GO:0035327
"transcriptionally active chromatin" evidence=IEA] [GO:0009048
"dosage compensation by inactivation of X chromosome" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0004532 "exoribonuclease activity" evidence=IEA]
[GO:0000460 "maturation of 5.8S rRNA" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000176 "nuclear exosome (RNase complex)" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR002121
InterPro:IPR002562 InterPro:IPR010997 InterPro:IPR012337
InterPro:IPR012588 Pfam:PF00570 Pfam:PF01612 Pfam:PF08066
PROSITE:PS50967 SMART:SM00341 SMART:SM00474 GO:GO:0005737
GO:GO:0005730 GO:GO:0000184 GO:GO:0000166 GO:GO:0003676
SUPFAM:SSF53098 GO:GO:0071035 GO:GO:0008408 GO:GO:0035327
GO:GO:0071044 SUPFAM:SSF47819 GO:GO:0009048 GO:GO:0000460
GO:GO:0000176 GO:GO:0071034 OMA:GNKSMSF GO:GO:0004532 GO:GO:0071048
GeneTree:ENSGT00390000015408 EMBL:DAAA02042967 IPI:IPI00698678
Ensembl:ENSBTAT00000003354 ArrayExpress:E1BMZ5 Uniprot:E1BMZ5
Length = 890
Score = 188 (71.2 bits), Expect = 4.3e-11, P = 4.3e-11
Identities = 40/97 (41%), Positives = 59/97 (60%)
Query: 2 KIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLA 61
K++L + +E T L V++RS D+C + + K + ++ SYL +Y Q LN QQL
Sbjct: 453 KMRLELWERGNEQP-TQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNTQQLT 511
Query: 62 VVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 98
L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 512 AFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 548
>UNIPROTKB|F1PI20 [details] [associations]
symbol:EXOSC10 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000176
"nuclear exosome (RNase complex)" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR002121
InterPro:IPR002562 InterPro:IPR010997 InterPro:IPR012337
InterPro:IPR012588 Pfam:PF00570 Pfam:PF01612 Pfam:PF08066
PROSITE:PS50967 SMART:SM00341 SMART:SM00474 GO:GO:0000166
GO:GO:0003676 GO:GO:0006396 SUPFAM:SSF53098 GO:GO:0008408
SUPFAM:SSF47819 GO:GO:0000176 OMA:GNKSMSF
GeneTree:ENSGT00390000015408 EMBL:AAEX03001937
Ensembl:ENSCAFT00000026485 Uniprot:F1PI20
Length = 908
Score = 186 (70.5 bits), Expect = 7.3e-11, P = 7.3e-11
Identities = 40/97 (41%), Positives = 58/97 (59%)
Query: 2 KIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLA 61
K++L + +E L V++RS D+C + + K L ++ SYL +Y Q LN QQL
Sbjct: 472 KMRLELWERGNEQP-VQLQVVWQRSRDICLKKFVKPLFTDESYLELYRKQKKHLNTQQLT 530
Query: 62 VVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 98
L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 531 AFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 567
>UNIPROTKB|B4DKG8 [details] [associations]
symbol:EXOSC10 "Exosome component 10" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000176
"nuclear exosome (RNase complex)" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR002121 InterPro:IPR002562 InterPro:IPR010997
InterPro:IPR012337 InterPro:IPR012588 Pfam:PF00570 Pfam:PF01612
Pfam:PF08066 PROSITE:PS50967 SMART:SM00341 SMART:SM00474
GO:GO:0005737 GO:GO:0005730 GO:GO:0000166 GO:GO:0003676
GO:GO:0006396 SUPFAM:SSF53098 GO:GO:0008408 SUPFAM:SSF47819
GO:GO:0000176 EMBL:AL109811 UniGene:Hs.632368 HGNC:HGNC:9138
HOVERGEN:HBG051524 ChiTaRS:EXOSC10 EMBL:AK296559 IPI:IPI01010048
SMR:B4DKG8 STRING:B4DKG8 Ensembl:ENST00000544779 Uniprot:B4DKG8
Length = 679
Score = 183 (69.5 bits), Expect = 1.0e-10, P = 1.0e-10
Identities = 39/97 (40%), Positives = 57/97 (58%)
Query: 2 KIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLA 61
K++L M + L V++RS D+C + + K + ++ SYL +Y Q LN QQL
Sbjct: 450 KMRLE-MWERGNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNTQQLT 508
Query: 62 VVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 98
L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 509 AFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 545
>RGD|2323986 [details] [associations]
symbol:LOC100366273 "rCG30986-like" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000176 "nuclear exosome (RNase complex)" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA] InterPro:IPR002121 InterPro:IPR002562
InterPro:IPR010997 InterPro:IPR012337 InterPro:IPR012588
Pfam:PF00570 Pfam:PF01612 Pfam:PF08066 PROSITE:PS50967
SMART:SM00341 SMART:SM00474 RGD:2323986 GO:GO:0000166 GO:GO:0003676
GO:GO:0006396 SUPFAM:SSF53098 GO:GO:0008408 SUPFAM:SSF47819
GO:GO:0000176 GeneTree:ENSGT00390000015408 IPI:IPI00211602
ProteinModelPortal:D4A2C3 Ensembl:ENSRNOT00000014593
ArrayExpress:D4A2C3 Uniprot:D4A2C3
Length = 859
Score = 184 (69.8 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 38/86 (44%), Positives = 55/86 (63%)
Query: 15 SDTP--LTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDV 72
+D P L V++RS D+C + + K + ++ SYL +Y Q LN+QQL L WRD
Sbjct: 459 NDQPVQLQVVWQRSRDICLKKFVKPIFTDESYLELYRKQKKHLNSQQLTAFQLLFAWRDK 518
Query: 73 IARADDESTGYVLPNRTLIEIAKQLP 98
AR +DES GYVLPN +++IA++LP
Sbjct: 519 TARREDESYGYVLPNHMMLKIAEELP 544
>UNIPROTKB|D4A1X2 [details] [associations]
symbol:LOC100366273 "Protein LOC100366273" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000176 "nuclear exosome (RNase complex)" evidence=IEA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA] [GO:0000460 "maturation of
5.8S rRNA" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004532 "exoribonuclease activity" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA] [GO:0009048 "dosage compensation by inactivation of X
chromosome" evidence=IEA] [GO:0035327 "transcriptionally active
chromatin" evidence=IEA] [GO:0071034 "CUT catabolic process"
evidence=IEA] [GO:0071035 "nuclear polyadenylation-dependent rRNA
catabolic process" evidence=IEA] [GO:0071044 "histone mRNA
catabolic process" evidence=IEA] [GO:0071048 "nuclear retention of
unspliced pre-mRNA at the site of transcription" evidence=IEA]
InterPro:IPR002121 InterPro:IPR002562 InterPro:IPR010997
InterPro:IPR012337 InterPro:IPR012588 Pfam:PF00570 Pfam:PF01612
Pfam:PF08066 PROSITE:PS50967 SMART:SM00341 SMART:SM00474
RGD:2323986 GO:GO:0005737 GO:GO:0005730 GO:GO:0000184 GO:GO:0000166
GO:GO:0003676 SUPFAM:SSF53098 GO:GO:0071035 GO:GO:0008408
GO:GO:0035327 GO:GO:0071044 SUPFAM:SSF47819 GO:GO:0009048
GO:GO:0000460 GO:GO:0000176 GO:GO:0071034 OMA:GNKSMSF
OrthoDB:EOG4X6C7P GO:GO:0004532 GO:GO:0071048
GeneTree:ENSGT00390000015408 IPI:IPI00359630 PRIDE:D4A1X2
Ensembl:ENSRNOT00000014629 ArrayExpress:D4A1X2 Uniprot:D4A1X2
Length = 884
Score = 184 (69.8 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 38/86 (44%), Positives = 55/86 (63%)
Query: 15 SDTP--LTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDV 72
+D P L V++RS D+C + + K + ++ SYL +Y Q LN+QQL L WRD
Sbjct: 459 NDQPVQLQVVWQRSRDICLKKFVKPIFTDESYLELYRKQKKHLNSQQLTAFQLLFAWRDK 518
Query: 73 IARADDESTGYVLPNRTLIEIAKQLP 98
AR +DES GYVLPN +++IA++LP
Sbjct: 519 TARREDESYGYVLPNHMMLKIAEELP 544
>UNIPROTKB|F1RHR9 [details] [associations]
symbol:EXOSC10 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071048 "nuclear retention of unspliced pre-mRNA at the
site of transcription" evidence=IEA] [GO:0071044 "histone mRNA
catabolic process" evidence=IEA] [GO:0071035 "nuclear
polyadenylation-dependent rRNA catabolic process" evidence=IEA]
[GO:0071034 "CUT catabolic process" evidence=IEA] [GO:0035327
"transcriptionally active chromatin" evidence=IEA] [GO:0009048
"dosage compensation by inactivation of X chromosome" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0004532 "exoribonuclease activity" evidence=IEA]
[GO:0000460 "maturation of 5.8S rRNA" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000176 "nuclear exosome (RNase complex)" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR002121
InterPro:IPR002562 InterPro:IPR010997 InterPro:IPR012337
InterPro:IPR012588 Pfam:PF00570 Pfam:PF01612 Pfam:PF08066
PROSITE:PS50967 SMART:SM00341 SMART:SM00474 GO:GO:0005737
GO:GO:0005730 GO:GO:0000184 GO:GO:0000166 GO:GO:0003676
SUPFAM:SSF53098 GO:GO:0071035 GO:GO:0008408 GO:GO:0035327
GO:GO:0071044 SUPFAM:SSF47819 GO:GO:0009048 GO:GO:0000460
GO:GO:0000176 GO:GO:0071034 CTD:5394 KO:K12591 OMA:GNKSMSF
GO:GO:0004532 GO:GO:0071048 GeneTree:ENSGT00390000015408
EMBL:CU694468 RefSeq:XP_003127631.2 UniGene:Ssc.23524
Ensembl:ENSSSCT00000003785 GeneID:100511264 KEGG:ssc:100511264
Uniprot:F1RHR9
Length = 886
Score = 183 (69.5 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 39/97 (40%), Positives = 59/97 (60%)
Query: 2 KIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLA 61
K++L+ + +E L V++RS D+C + + K + ++ SYL +Y Q LN QQL
Sbjct: 450 KMRLALWERGNEQP-AQLQVVWQRSRDICLKKFIKPIFTDESYLDLYRKQKKHLNTQQLT 508
Query: 62 VVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 98
L WRD AR +DES GYVLPN +++IA++LP
Sbjct: 509 AFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 545
>FB|FBgn0038269 [details] [associations]
symbol:Rrp6 "Rrp6" species:7227 "Drosophila melanogaster"
[GO:0000176 "nuclear exosome (RNase complex)" evidence=ISS;IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008408 "3'-5'
exonuclease activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005652 "nuclear lamina" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006378 "mRNA polyadenylation" evidence=IMP]
[GO:0071027 "nuclear RNA surveillance" evidence=IMP] [GO:0010468
"regulation of gene expression" evidence=IMP] InterPro:IPR002121
InterPro:IPR002562 InterPro:IPR010997 InterPro:IPR012337
InterPro:IPR012588 Pfam:PF00570 Pfam:PF01612 Pfam:PF08066
PROSITE:PS50967 SMART:SM00341 SMART:SM00474 EMBL:AE014297
GO:GO:0005730 GO:GO:0000166 GO:GO:0006378 GO:GO:0003676
SUPFAM:SSF53098 GO:GO:0010468 GO:GO:0008408 SUPFAM:SSF47819
GO:GO:0005652 GO:GO:0000176 KO:K12591 GeneTree:ENSGT00390000015408
GO:GO:0071027 RefSeq:NP_001097795.1 UniGene:Dm.7279
ProteinModelPortal:Q9VFF3 SMR:Q9VFF3 IntAct:Q9VFF3 STRING:Q9VFF3
PRIDE:Q9VFF3 EnsemblMetazoa:FBtr0113235 GeneID:41798
KEGG:dme:Dmel_CG7292 UCSC:CG7292-RB CTD:41798 FlyBase:FBgn0038269
InParanoid:Q9VFF3 OMA:FERITTN OrthoDB:EOG4THT8C PhylomeDB:Q9VFF3
GenomeRNAi:41798 NextBio:825622 ArrayExpress:Q9VFF3 Bgee:Q9VFF3
Uniprot:Q9VFF3
Length = 900
Score = 171 (65.3 bits), Expect = 3.1e-09, P = 3.1e-09
Identities = 33/80 (41%), Positives = 50/80 (62%)
Query: 19 LTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADD 78
L VY++S DVC++ Y K + S+L + + +QL + G+ EWRD AR++D
Sbjct: 448 LGSVYQQSTDVCKKRYNKPHIGPESHLDLVRKTKRSFDNRQLYALRGIFEWRDATARSED 507
Query: 79 ESTGYVLPNRTLIEIAKQLP 98
ES GYVLPN +++IA+ LP
Sbjct: 508 ESYGYVLPNHMMLQIAESLP 527
>WB|WBGene00000796 [details] [associations]
symbol:crn-3 species:6239 "Caenorhabditis elegans"
[GO:0006396 "RNA processing" evidence=IEA;TAS] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA] [GO:0000176 "nuclear exosome (RNase complex)"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0006915 "apoptotic process" evidence=IMP] [GO:0009790 "embryo
development" evidence=IMP] [GO:0006309 "apoptotic DNA
fragmentation" evidence=IGI;IMP] [GO:0043277 "apoptotic cell
clearance" evidence=IDA] [GO:0000178 "exosome (RNase complex)"
evidence=TAS] InterPro:IPR002121 InterPro:IPR002562
InterPro:IPR010997 InterPro:IPR012337 InterPro:IPR012588
Pfam:PF00570 Pfam:PF01612 Pfam:PF08066 PROSITE:PS50967
SMART:SM00341 SMART:SM00474 GO:GO:0009792 GO:GO:0006898
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0000166
GO:GO:0003676 GO:GO:0006396 SUPFAM:SSF53098 GO:GO:0000178
GO:GO:0006309 GO:GO:0008408 SUPFAM:SSF47819 GO:GO:0000176
GO:GO:0043277 EMBL:Z49909 KO:K12591 GeneTree:ENSGT00390000015408
EMBL:AY303577 PIR:T19246 RefSeq:NP_496283.1 UniGene:Cel.7455
ProteinModelPortal:G5EBX6 SMR:G5EBX6 PRIDE:G5EBX6
EnsemblMetazoa:C14A4.4a GeneID:3565889 KEGG:cel:CELE_C14A4.4
CTD:3565889 WormBase:C14A4.4a OMA:TEEEHPY NextBio:958247
Uniprot:G5EBX6
Length = 876
Score = 172 (65.6 bits), Expect = 4.9e-09, Sum P(2) = 4.9e-09
Identities = 80/353 (22%), Positives = 161/353 (45%)
Query: 16 DTP-LTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIA 74
DT L VY S D+C ++Y+K + + YL + LN +Q + L +WRDV+A
Sbjct: 449 DTKDLANVYSESSDLCIKVYKKPVFNPKGYLTEIKFRFT-LNTRQDYALTHLFKWRDVVA 507
Query: 75 RADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAA 134
RA+DES +VLPN ++ +++ LP + ++++ G +L II
Sbjct: 508 RAEDESPHFVLPNHMMLSLSETLPRDVGGIYACCNPLPYFVKQRTGDILKII-------- 559
Query: 135 NFEVIAQKLKEERMEVASEETEVLVLDTSSNLKIPNVGRESVDGVDALVGTTMPHPPAYT 194
V A+ +K E++ ++++E D + N +++D + +++ + + ++T
Sbjct: 560 ---VEARDVKLEKVGLSAKERN----DAQEARGVMN---DTMDHITSVLKSKIDF--SHT 607
Query: 195 QLKQEPPKVGSSVAELDRNGLGSFAHPGEAIAS--ENKEATHISTLSSSGQSRDLNACKS 252
+ +E ++ + + D E++ S + E + T+ + + KS
Sbjct: 608 RFDEERGEI--YIDKTDEGMDIELKDHKESLLSVLQTAEIPSVETMIVVEKGK-----KS 660
Query: 253 PSPRVTEAAVQALK--KPNRGFGALLGNPKRKFDGEKKDKEAMKLEQ------IKSSVNL 304
+ +V + + K P + ++ +++ + E+K+ E KLE+ + S +
Sbjct: 661 DNQKVKKLLNELDKFVTPFECYQMMMITKEKQEEEERKEAERKKLEEGDLPKTMFSHHDA 720
Query: 305 PFHSIFARDEQLKPVDVMK---SEPNKPDLPFPSSFGSGEQTKPIIEESNRVT 354
P + D +L VD +K +PNKP P PS ++P I + +R T
Sbjct: 721 PINRKPEFDAKLLNVDTLKLVPDDPNKPKDPEPSPMEESS-SEPQIFDPSRFT 772
Score = 44 (20.5 bits), Expect = 4.9e-09, Sum P(2) = 4.9e-09
Identities = 16/53 (30%), Positives = 26/53 (49%)
Query: 458 EAARKQIEFGEDAKEKSAGVDGNKRK-----PVNSGDKKKV--SAVDQAQKDD 503
+AAR+ I+ E S+ D K+K PV D +K SA ++ +D+
Sbjct: 787 DAARRNIDVSVVLGESSSSSDPKKKKSDDDAPVEDFDYEKADSSAFEKPVRDN 839
>DICTYBASE|DDB_G0271572 [details] [associations]
symbol:exosc10 "exosome component 10" species:44689
"Dictyostelium discoideum" [GO:0044237 "cellular metabolic process"
evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0006139 "nucleobase-containing compound metabolic process"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0003824
"catalytic activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000176 "nuclear exosome (RNase
complex)" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006402 "mRNA catabolic process" evidence=ISS]
[GO:0005730 "nucleolus" evidence=ISS] [GO:0004527 "exonuclease
activity" evidence=IEA] InterPro:IPR002121 InterPro:IPR002562
InterPro:IPR010997 InterPro:IPR012337 InterPro:IPR012588
Pfam:PF00570 Pfam:PF01612 Pfam:PF08066 PROSITE:PS50967
SMART:SM00474 dictyBase:DDB_G0271572 GO:GO:0005730 GO:GO:0000166
GenomeReviews:CM000151_GR GO:GO:0003676 EMBL:AAFI02000006
GO:GO:0006396 SUPFAM:SSF53098 GO:GO:0006402 GO:GO:0008408
SUPFAM:SSF47819 GO:GO:0000176 eggNOG:COG0349 KO:K12591
RefSeq:XP_645586.2 ProteinModelPortal:Q55AW0 STRING:Q55AW0
EnsemblProtists:DDB0233752 GeneID:8618039 KEGG:ddi:DDB_G0271572
OMA:LRSHIHM ProtClustDB:CLSZ2847850 Uniprot:Q55AW0
Length = 1195
Score = 148 (57.2 bits), Expect = 8.2e-06, Sum P(3) = 8.2e-06
Identities = 45/187 (24%), Positives = 89/187 (47%)
Query: 19 LTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADD 78
L EV +RS ++ YEK++L +NS+++ + QL V+ L WR+ +AR +D
Sbjct: 443 LLEVLRRSRELSLLRYEKDILDDNSHINFAKKLNLQYSPTQLNVLKVLYHWREGLARDED 502
Query: 79 ESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLS-IIKNSMQNAANFE 137
ES Y+LPN+ ++ I ++ PT+ +L L I+++ ++ I+K +++ +
Sbjct: 503 ESVRYILPNQMMLTIVERQPTSVQELLTLCSPIPPSIKQHSHQLIQEILKARIEDPSKQP 562
Query: 138 VIAQKLKEERMEVASEETEVLVLDTSSNLKIPNVGRES-VDGVDALVGTTM-----PHPP 191
+L + + ++ V ++ + ++ V TT+ P PP
Sbjct: 563 SFIPQLHS----LLNNQSNVFYTQKQQQIQQQQIQQQQQVTAATVPQATTIKPIIQPPPP 618
Query: 192 AYTQLKQ 198
QL+Q
Sbjct: 619 QQQQLQQ 625
Score = 45 (20.9 bits), Expect = 8.2e-06, Sum P(3) = 8.2e-06
Identities = 15/45 (33%), Positives = 21/45 (46%)
Query: 410 KQDETMSLS-DLSTSFQECFHSANNNRKPGKPERSEEPSGFLQLK 453
K++ ++S + LSTS S NN K K E + F LK
Sbjct: 960 KENSSISATTSLSTSPSSLLDSTNNPPKSKKDENASVTDTFSFLK 1004
Score = 44 (20.5 bits), Expect = 1.0e-05, Sum P(3) = 1.0e-05
Identities = 23/106 (21%), Positives = 39/106 (36%)
Query: 423 SFQECFHSANNNRKPGKPERS-EEPSGFLQLKPFDFEAARKQIEFGEDAKEKSAGVDGNK 481
S QE + +N NR+ K ++ +E S + K K D N
Sbjct: 938 SMQEIYQLSNMNRRRNKEKKKLKENSSISATTSLSTSPSSLLDSTNNPPKSKK---DENA 994
Query: 482 RKPVNSGDKKKVSAVDQAQKDDGTKELSQG-RRRSAFPATGNRSAT 526
K++ ++ Q D K +SQ +++ A AT + T
Sbjct: 995 SVTDTFSFLKEIGWINNEQSADSFKPVSQQLQQQPASSATATTTTT 1040
Score = 39 (18.8 bits), Expect = 8.2e-06, Sum P(3) = 8.2e-06
Identities = 8/34 (23%), Positives = 18/34 (52%)
Query: 220 HPGEAIASENKEATHISTLSSSGQSRDLNACKSP 253
H ++ ++ N T +T +++ S +LN + P
Sbjct: 903 HSNDSTSTSNSTTTTTTTTTANTSSSNLNNNQVP 936
>POMBASE|SPAC1F3.01 [details] [associations]
symbol:rrp6 "exosome 3'-5' exoribonuclease subunit Rrp6
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000175
"3'-5'-exoribonuclease activity" evidence=ISO] [GO:0000176 "nuclear
exosome (RNase complex)" evidence=ISO] [GO:0000467 "exonucleolytic
trimming to generate mature 3'-end of 5.8S rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0034661
"ncRNA catabolic process" evidence=ISO] [GO:0070478
"nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic
nonsense-mediated decay" evidence=ISO] [GO:0070481
"nuclear-transcribed mRNA catabolic process, non-stop decay"
evidence=ISO] [GO:0070651 "nonfunctional rRNA decay" evidence=ISO]
[GO:0071035 "nuclear polyadenylation-dependent rRNA catabolic
process" evidence=ISO] [GO:0071038 "nuclear
polyadenylation-dependent tRNA catabolic process" evidence=ISO]
[GO:0071042 "nuclear polyadenylation-dependent mRNA catabolic
process" evidence=ISO] InterPro:IPR002121 InterPro:IPR002562
InterPro:IPR010997 InterPro:IPR012337 InterPro:IPR012588
Pfam:PF00570 Pfam:PF01612 Pfam:PF08066 PROSITE:PS50967
SMART:SM00341 SMART:SM00474 PomBase:SPAC1F3.01 EMBL:CU329670
GO:GO:0005730 GenomeReviews:CU329670_GR GO:GO:0000166 GO:GO:0003723
SUPFAM:SSF53098 GO:GO:0071035 GO:GO:0071038 SUPFAM:SSF47819
GO:GO:0000176 GO:GO:0000175 GO:GO:0000467 GO:GO:0070651
GO:GO:0071042 GO:GO:0070478 GO:GO:0070481 eggNOG:COG0349 KO:K12591
PIR:T38769 RefSeq:NP_593004.2 ProteinModelPortal:Q10146
STRING:Q10146 EnsemblFungi:SPAC1F3.01.1 GeneID:2543630
KEGG:spo:SPAC1F3.01 OMA:YGIVCLM OrthoDB:EOG4SJ8P0 NextBio:20804636
Uniprot:Q10146
Length = 777
Score = 140 (54.3 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
Identities = 42/165 (25%), Positives = 75/165 (45%)
Query: 10 KESENSDTPLTEVYKRSYDVCRQLYEKEL------LSENSYLHIYGLQGAG--LNAQQLA 61
K +E + + V+ S + + YE E L + + ++ G+ + + L
Sbjct: 388 KSAERKENLMQSVFNSSKQISLRKYELEPYDPIYGLGTDGWRNVLTKFGSSKIIGREALM 447
Query: 62 VVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGP 121
+ L +WRD +AR +DES YVLPNR LI IA P AA + + K Y+
Sbjct: 448 IYRALHDWRDSVARKEDESVRYVLPNRLLIAIAASKPVEAADVFSISKQLTPIARMYVED 507
Query: 122 VLSIIKNSMQNAANFEVIAQKLKEERMEVASEETEVLVLDTSSNL 166
++ +++ + + N +V + K + EV + + V S+ L
Sbjct: 508 IVKVVQEA-EKLYNEQV--DREKSQFKEVEKQNQPLAVFSESNTL 549
Score = 40 (19.1 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
Identities = 19/83 (22%), Positives = 34/83 (40%)
Query: 401 SAGSALEMGKQDETMSLSDLSTSFQECFHSANNNRKPGKP--ERSEEPSGFLQLKPFDFE 458
+A +L K+ E + + DL + Q+ S N+++P P ER+E D E
Sbjct: 631 AANPSLNGEKKQEPIVIRDLGLNKQKRDSSKLNHKEPSNPIEERNE-----------DIE 679
Query: 459 AARKQIEFGEDAKEKSAGVDGNK 481
+ + K+K + K
Sbjct: 680 PSEASTSVSKKRKQKKKKKNSGK 702
>TAIR|locus:504955936 [details] [associations]
symbol:AT2G32415 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005576
"extracellular region" evidence=ISM] [GO:0005622 "intracellular"
evidence=IEA] [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA] InterPro:IPR002121 InterPro:IPR002562
InterPro:IPR010997 InterPro:IPR012337 Pfam:PF00570 Pfam:PF01612
SMART:SM00474 EMBL:CP002685 GO:GO:0000166 GO:GO:0003676
GO:GO:0005622 SUPFAM:SSF53098 GO:GO:0008408 SUPFAM:SSF47819
KO:K12591 IPI:IPI00520495 RefSeq:NP_850189.5 UniGene:At.47141
ProteinModelPortal:F4ITQ6 SMR:F4ITQ6 PRIDE:F4ITQ6
EnsemblPlants:AT2G32415.1 GeneID:817803 KEGG:ath:AT2G32415
OMA:ICVGCGE Uniprot:F4ITQ6
Length = 891
Score = 128 (50.1 bits), Expect = 0.00015, P = 0.00015
Identities = 38/115 (33%), Positives = 59/115 (51%)
Query: 4 KLSSMPKESENSDTP---LTEVYKRSYDVCRQLYEKEL------LSENS--YLHIYG--- 49
+L + +S + D L E +RS C QLY KE + +S Y H+ G
Sbjct: 285 ELKQLATDSSSPDDRFHFLLEASRRSNMTCLQLYTKETEDFPGSAASSSIIYRHLNGHGD 344
Query: 50 LQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKL 104
LNA++L V LC WRD++ R DEST YVL ++ ++ ++ + PTT ++
Sbjct: 345 KSNISLNAEEL--VRKLCAWRDLMGRIHDESTRYVLSDQAIVGLSCKQPTTTEEI 397
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.309 0.127 0.348 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 528 512 0.00087 119 3 11 23 0.37 35
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 16
No. of states in DFA: 603 (64 KB)
Total size of DFA: 250 KB (2134 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 49.88u 0.10s 49.98t Elapsed: 00:00:02
Total cpu time: 49.88u 0.10s 49.98t Elapsed: 00:00:02
Start: Fri May 10 22:28:04 2013 End: Fri May 10 22:28:06 2013