BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009712
(528 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P56960|EXOSX_MOUSE Exosome component 10 OS=Mus musculus GN=Exosc10 PE=1 SV=2
Length = 887
Score = 80.5 bits (197), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 52/80 (65%)
Query: 19 LTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADD 78
L V++RS D+C + + K + ++ SYL +Y Q LN+QQL L WRD AR +D
Sbjct: 466 LQVVWQRSRDICLKKFVKPIFTDESYLELYRKQKKHLNSQQLTAFQLLFAWRDKTARRED 525
Query: 79 ESTGYVLPNRTLIEIAKQLP 98
ES GYVLPN +++IA++LP
Sbjct: 526 ESYGYVLPNHMMLKIAEELP 545
>sp|Q01780|EXOSX_HUMAN Exosome component 10 OS=Homo sapiens GN=EXOSC10 PE=1 SV=2
Length = 885
Score = 79.7 bits (195), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 51/80 (63%)
Query: 19 LTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADD 78
L V++RS D+C + + K + ++ SYL +Y Q LN QQL L WRD AR +D
Sbjct: 466 LQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNTQQLTAFQLLFAWRDKTARRED 525
Query: 79 ESTGYVLPNRTLIEIAKQLP 98
ES GYVLPN +++IA++LP
Sbjct: 526 ESYGYVLPNHMMLKIAEELP 545
>sp|Q10146|RRP6_SCHPO Exosome complex exonuclease rrp6 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rrp6 PE=3 SV=2
Length = 777
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 59/133 (44%), Gaps = 18/133 (13%)
Query: 8 MPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAG------------- 54
+ K +E + + V+ S + + YE E Y IYGL G
Sbjct: 386 ISKSAERKENLMQSVFNSSKQISLRKYELE-----PYDPIYGLGTDGWRNVLTKFGSSKI 440
Query: 55 LNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSY 114
+ + L + L +WRD +AR +DES YVLPNR LI IA P AA + + K
Sbjct: 441 IGREALMIYRALHDWRDSVARKEDESVRYVLPNRLLIAIAASKPVEAADVFSISKQLTPI 500
Query: 115 IERYMGPVLSIIK 127
Y+ ++ +++
Sbjct: 501 ARMYVEDIVKVVQ 513
>sp|Q12149|RRP6_YEAST Exosome complex exonuclease RRP6 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RRP6 PE=1 SV=1
Length = 733
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 58/113 (51%), Gaps = 9/113 (7%)
Query: 61 AVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMG 120
+V L +WRD+IAR DDES +V+PN+ L + PT + L ++ +
Sbjct: 440 VLVRELYQWRDLIARRDDESPRFVMPNQLLAALVAYTPTDVIGVVSLTNGVTEHVRQNAK 499
Query: 121 PVLSIIKNSMQNAANFEVIAQKLKEERMEVASEETEV--LVLDTSSNLKIPNV 171
+ ++I+++++N N EE + S ET+ ++L+T S +I +V
Sbjct: 500 LLANLIRDALRNIKN-------TNEEATPIPSSETKADGILLETISVPQIRDV 545
>sp|A6V8R6|RND_PSEA7 Ribonuclease D OS=Pseudomonas aeruginosa (strain PA7) GN=rnd PE=3
SV=2
Length = 376
Score = 40.4 bits (93), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 27/47 (57%)
Query: 52 GAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 98
G L QQLAV+ LC WR+ AR + +VL RTL +A+ LP
Sbjct: 210 GWRLRPQQLAVLRELCAWREEQARLRNRPRNHVLRERTLWPLARLLP 256
>sp|Q2JB35|LIPB_FRASC Octanoyltransferase OS=Frankia sp. (strain CcI3) GN=lipB PE=3 SV=1
Length = 221
Score = 37.7 bits (86), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 6/60 (10%)
Query: 173 RESVDGVDALVGTTMPHPPAYTQLKQEPPK------VGSSVAELDRNGLGSFAHPGEAIA 226
RE +DGV + HPP YT K+ PP+ +G V E +R GL ++ PG+ +
Sbjct: 9 RERIDGVRPDTLWFLSHPPVYTVGKRTPPEHRPLAGLGIPVHETNRGGLLTYHAPGQLVG 68
>sp|A0KXU5|RND_SHESA Ribonuclease D OS=Shewanella sp. (strain ANA-3) GN=rnd PE=3 SV=1
Length = 388
Score = 34.3 bits (77), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 29/53 (54%)
Query: 55 LNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 107
L QLA + L +WR A A D + G+V+ + LI +AK+ P + L +L
Sbjct: 229 LTEHQLAYLKVLAKWRLEKALARDLALGFVIKDHGLIALAKKQPKSMGDLLKL 281
>sp|Q6G329|RND_BARHE Ribonuclease D OS=Bartonella henselae (strain ATCC 49882 / Houston
1) GN=rnd PE=3 SV=1
Length = 406
Score = 33.5 bits (75), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%)
Query: 58 QQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 107
++LAV+ + WR+ AR + +++ + LIEIA Q P A L+RL
Sbjct: 233 RELAVLQKIAAWRERKARQYNIPRRHIIKDECLIEIAIQQPKDEADLKRL 282
>sp|A8GFH0|RND_SERP5 Ribonuclease D OS=Serratia proteamaculans (strain 568) GN=rnd PE=3
SV=2
Length = 373
Score = 32.7 bits (73), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 28/53 (52%)
Query: 55 LNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRL 107
L +QL + L EWR AR D + +V+ L ++A+ +PT+ +L L
Sbjct: 209 LRPRQLGCLQKLAEWRLRQARERDLAVNFVVREENLWQVARHMPTSLGELDSL 261
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.308 0.127 0.348
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 197,693,169
Number of Sequences: 539616
Number of extensions: 8701982
Number of successful extensions: 24388
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 180
Number of HSP's that attempted gapping in prelim test: 24188
Number of HSP's gapped (non-prelim): 339
length of query: 528
length of database: 191,569,459
effective HSP length: 122
effective length of query: 406
effective length of database: 125,736,307
effective search space: 51048940642
effective search space used: 51048940642
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 64 (29.3 bits)