BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009713
(528 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q54Y85|DPOE2_DICDI DNA polymerase epsilon subunit 2 OS=Dictyostelium discoideum
GN=pole2 PE=3 SV=1
Length = 676
Score = 325 bits (832), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 184/532 (34%), Positives = 294/532 (55%), Gaps = 29/532 (5%)
Query: 1 MSGQTRKKIQKKMKIRGYGLRMDALDEILSFVNRFPDAEDEAIDLLLDQFEHESSLKSSI 60
M Q +K+I K + G+ ++ DA+ I++ + + ID LL + L++
Sbjct: 1 MDIQWKKQITKSFSLTGFSIKADAMKCIINRIKNEGYDITQLIDNLLKNLDKSQYLQTI- 59
Query: 61 IDKESVNRVTSVLLQAEAAAEGDSGSASNHSAIRVIDAFLVPKFRYDSIKKHFYQHAG-S 119
E ++ + +S A A++VIDAF P F +DS K F +
Sbjct: 60 ---EGCFKLIDTI---------NSSDAIEKEALKVIDAFNTPLFNFDSNSKQFIKSENFD 107
Query: 120 LPIHGEASAKAALYRDRFLLLFQRVSRDQHFSRPSF--DVVNSEFGSCEISTIQSLVGQT 177
+HG +++K+ LYR R+L + QR R+ +FS P D + +E+ + I+ + SL+G T
Sbjct: 108 RSLHGSSNSKSDLYRKRYLKVLQRTERNDYFSTPVLASDKLKNEYQT--ITPLSSLLGNT 165
Query: 178 GRRWVMGVISQLEDGHFYLEDLAASVEIDLSKAKITTGFFTENTIVVAEGEMLVDGIFQV 237
GR+ V+G ISQ+E+ FY+EDL +V+ID+SKAK G T N+I+ A GE +DG+F
Sbjct: 166 GRKHVLGTISQIEEDQFYIEDLNTNVKIDISKAKFEFGIVTINSIIQASGE-FIDGVFIA 224
Query: 238 ITCGFPPLEDRDQSLKLLAGYDFFGGGTLKKEDTLRLADLEKRAANDMFVILSDIWLDNE 297
PP E+R ++LK L D FG KK +L EK ++ + LSD+WLD+E
Sbjct: 225 DKIQLPPTEERCETLKFLQNIDMFGERPQKKT-MEQLIKYEKEKEDNSILFLSDVWLDSE 283
Query: 298 EVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPR 357
VM +L+ + G++ + P + MGNF HP L + L+ F +L +I +P
Sbjct: 284 RVMERLDYLFGGYK--DCPPFAMILMGNFTEHP--LINGTQYQLKKYFNQLAMVIQKYPN 339
Query: 358 LKEHSRFLFIPGPDDAGPS--TVLPRCALPKYLTEELQKYIPNAIFSSNPCRIKFYTQEI 415
+ + ++F+F+PGP D S +LP+ + ++ IP + F++NPCRI++ +QEI
Sbjct: 340 IHQFTQFIFVPGPTDPTGSLLNILPKFPISNVFIKDFISLIPKSTFTTNPCRIRYCSQEI 399
Query: 416 VFFRQDLLYRMRRSCLIPPSREETDDPFEHLVATITHQSHLCPLPLTVQPIIWNYDHSLH 475
+ FR DL +MRR C++ PS ++ D +HL+ I SHLC L L +PI WNYDH++
Sbjct: 400 IIFRDDLTNKMRRHCILEPS--QSCDISQHLIELICSNSHLCNLTLEDKPIYWNYDHAMS 457
Query: 476 LYPTPHAIVLADKSEQ-KAFKYTGITCFNPGSFSSDSTFVAYRPCTQEVEFS 526
+YP P +V+ DKS Q + + G NP SFS+D +F Y P ++ ++
Sbjct: 458 VYPLPDLLVIGDKSNQYEHSRADGTYSMNPSSFSTDYSFAHYIPANKQFYYN 509
>sp|Q5ZKQ6|DPOE2_CHICK DNA polymerase epsilon subunit 2 OS=Gallus gallus GN=POLE2 PE=2
SV=1
Length = 527
Score = 310 bits (795), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 186/537 (34%), Positives = 301/537 (56%), Gaps = 33/537 (6%)
Query: 6 RKKIQKKMKIRGYGLRMDALDEILSFVNRFPDAE-DEAIDLLLDQFEHESSLKSSIIDKE 64
R+++ ++RG LR +A+ + + + E ++ ID ++D E + L +++I+
Sbjct: 7 RRRLGSAFRVRGLLLRAEAVKYLTETLESLNEEEFEDVIDKIIDAVEKQP-LSTNMIELS 65
Query: 65 SVNRVTSVLLQAEAAAEGDSGSASN--HSAIRVIDAFLVPKFRYDSIKKHFYQHA-GSLP 121
+V EAA + S + + +I AF +P++ Y+ +K F + +LP
Sbjct: 66 TV----------EAAVQECSQALDETIKNVFNIIGAFDIPRYIYNPDRKRFVPLSMTNLP 115
Query: 122 I---HGEASAKAALYRDRFLLLFQRVSRDQHFSRPSFDVVNSEFGSC--EISTIQSLVGQ 176
+ G A KA L+R+R+ +L QR R + F+ P+ V++ + ++ T+++L+G
Sbjct: 116 VPNLFGTARDKAELFRERYSILQQRTHRHELFT-PAAVVIHPDDNRSKFQLKTVETLLGN 174
Query: 177 TGRR---WVMGVISQLEDGHFYLEDLAASVEIDLSKAKITTGFFTENTIVVAEGEMLVDG 233
T + V+G+I+QL++G ++LED V++DLSKA+ +G +TE+ V+AEG D
Sbjct: 175 TAKVREVIVLGMITQLKEGKYFLEDPTGVVQLDLSKAQFHSGLYTESCFVLAEG-WYEDE 233
Query: 234 IFQVITCGFPPLEDRDQSLKLLAGYDFFGG-GTLKKEDTLRLADLEKRAANDMFVILSDI 292
+F V GFPP E + +FFGG + + + +L LE + MFV LSD+
Sbjct: 234 VFHVNAFGFPPTEPSATTRAFYGNINFFGGPSSASVKASAKLKQLEDENEDAMFVFLSDV 293
Query: 293 WLDNEEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMI 352
WLD EV+ KL + G+ S P+ F F GNF S P + SL+ L +I
Sbjct: 294 WLDQAEVLEKLHTMFSGYSSAP--PTCFFFCGNFSSAP--YGKNQIQSLKGSLKALADII 349
Query: 353 AAHPRLKEHSRFLFIPGPDDAGPSTVLPRCALPKYLTEELQKYIPNAIFSSNPCRIKFYT 412
+P + + SRF+F+PGP+D GP +VLPR L + +T+E ++ +P ++F++NPCR+++ T
Sbjct: 350 CEYPSIHKSSRFVFVPGPEDPGPGSVLPRPPLAENITQEFRQLVPFSVFTTNPCRVQYCT 409
Query: 413 QEIVFFRQDLLYRMRRSCLIPPSREETDDPFEHLVATITHQSHLCPLPLTVQPIIWNYDH 472
QEI+ FR+DL+ +M R+C+ PS D P H V TI Q HL PLPL V P+ W YD+
Sbjct: 410 QEIIIFREDLVNKMCRNCVRFPS-SSMDIP-NHFVKTILSQGHLTPLPLYVSPVYWAYDY 467
Query: 473 SLHLYPTPHAIVLADKSEQKAFKYTGITCFNPGSFS-SDSTFVAYRPCTQEVEFSAL 528
+L +YP P +V+ADK + T C NPGSF S +F + P + VE S L
Sbjct: 468 ALRVYPVPDMLVIADKYDPFTVTNTDCLCINPGSFPRSGFSFKVFYPSNKTVEDSKL 524
>sp|A7YWS7|DPOE2_BOVIN DNA polymerase epsilon subunit 2 OS=Bos taurus GN=POLE2 PE=2 SV=1
Length = 527
Score = 305 bits (782), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 190/538 (35%), Positives = 294/538 (54%), Gaps = 35/538 (6%)
Query: 6 RKKIQKKMKIRGYGLRMDA---LDEILSFVNRFPDAEDEAIDLLLDQFEHESSLKSSIID 62
R + K+RG LR +A L E L +N + ED A++ ++D E + L S++I+
Sbjct: 7 RSRALSAFKLRGLMLRGEAVKYLTEALQSINEI-ELED-ALEKIIDAVEKQP-LSSNMIE 63
Query: 63 KESVNRVTSVLLQAEAAAEGDSGSASN--HSAIRVIDAFLVPKFRYDSIKKHF----YQH 116
+ V EAA + S S +I AF +P+F Y+S +K F +
Sbjct: 64 RSVV----------EAAVQECSQSVDETIDHIFNIIGAFDIPRFVYNSERKKFLPLLMTN 113
Query: 117 AGSLPIHGEASAKAALYRDRFLLLFQRVSRDQHFSRPSFDVVNSEFGS-CEISTIQSLVG 175
+ + G A KA L+R+R+ +L QR R + F+ P E GS ++ TI++L+G
Sbjct: 114 HPAPNLFGTARDKAELFRERYTILHQRTHRHELFTPPVIGSHPDESGSKFQLKTIETLLG 173
Query: 176 QT---GRRWVMGVISQLEDGHFYLEDLAASVEIDLSKAKITTGFFTENTIVVAEGEMLVD 232
T G V+G+I+QL++G F+LED ++++DLSKA+ +G +TE+ V+AEG D
Sbjct: 174 STSKIGDVIVLGMITQLKEGKFFLEDPTGTIQLDLSKAQFHSGLYTESCFVLAEG-WFED 232
Query: 233 GIFQVITCGFPPLEDRDQSLKLLAGYDFFGG-GTLKKEDTLRLADLEKRAANDMFVILSD 291
+F V GFPP E + +FFGG + + +L LE + MFV +SD
Sbjct: 233 QVFHVNAFGFPPTEPSSTTRAYYGNTNFFGGPSNTSVKTSAKLKQLEDENKDAMFVFISD 292
Query: 292 IWLDNEEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQM 351
+WLD EV+ KL ++ G+ P+ F+ GNF S P + +L+ L +
Sbjct: 293 VWLDQVEVLEKLHIMFSGYSPAP--PTCFILCGNFSSAP--YGKNQVQALKDSLKTLADI 348
Query: 352 IAAHPRLKEHSRFLFIPGPDDAGPSTVLPRCALPKYLTEELQKYIPNAIFSSNPCRIKFY 411
I +P + + SRF+F+PGP+D G ++LPR + +T E ++ +P ++F++NPCRI++
Sbjct: 349 ICGYPNIHQSSRFVFVPGPEDPGFGSILPRPPFAESITNEFRQRVPFSVFTTNPCRIQYC 408
Query: 412 TQEIVFFRQDLLYRMRRSCLIPPSREETDDPFEHLVATITHQSHLCPLPLTVQPIIWNYD 471
TQEI+ FR+DL+ +M R+C+ PS D P H V T+ Q HL PLPL V P+ W YD
Sbjct: 409 TQEIIVFREDLVNKMCRNCVRFPS-SNLDIP-NHFVKTVLSQGHLTPLPLYVCPVYWAYD 466
Query: 472 HSLHLYPTPHAIVLADKSEQKAFKYTGITCFNPGSFS-SDSTFVAYRPCTQEVEFSAL 528
++L +YP P +V+ADK + T C NPGSF S +F + P + VE S L
Sbjct: 467 YALRVYPVPDLLVIADKYDPFTLTNTECLCINPGSFPRSGFSFKVFYPSNKVVEDSKL 524
>sp|O54956|DPOE2_MOUSE DNA polymerase epsilon subunit 2 OS=Mus musculus GN=Pole2 PE=2 SV=2
Length = 527
Score = 302 bits (774), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 190/537 (35%), Positives = 289/537 (53%), Gaps = 33/537 (6%)
Query: 6 RKKIQKKMKIRGYGLRMDALDEILSFVNRFPDAE-DEAIDLLLDQFEHESSLKSSIIDKE 64
R + K+RG LR +A + + + E +E + ++D E + L S++I++
Sbjct: 7 RSRTVSAFKLRGLLLRSEATKYLTEALQSVTELELEENLGKIIDAVEKQP-LSSNMIERS 65
Query: 65 SVNRVTSVLLQAEAAAEGDSGSASN--HSAIRVIDAFLVPKFRYDSIKKHFY-----QHA 117
V EAA + S S +I AF +P+F Y+S +K F HA
Sbjct: 66 VV----------EAAVQECSQSMDETIEHVFNIIGAFDIPRFIYNSERKKFLPLSMTNHA 115
Query: 118 GSLPIHGEASAKAALYRDRFLLLFQRVSRDQHFSRPSFDVVNSEFGS-CEISTIQSLVGQ 176
+ G A KA LY +R+ +L QR R + F+ P E GS ++ TI++L+G
Sbjct: 116 APT-LFGTARDKAELYLERYTILHQRTHRHELFTPPVIGSHLEESGSKFQLKTIETLLGS 174
Query: 177 T---GRRWVMGVISQLEDGHFYLEDLAASVEIDLSKAKITTGFFTENTIVVAEGEMLVDG 233
T G V+G+I+QL++G F+LED +V++DLSKA+ +G +TE V+AEG D
Sbjct: 175 TSKVGDVIVLGMITQLKEGKFFLEDPTGTVQLDLSKAQFHSGLYTEACFVLAEG-WFEDQ 233
Query: 234 IFQVITCGFPPLEDRDQSLKLLAGYDFFGGGTLKKEDTL-RLADLEKRAANDMFVILSDI 292
+F GFPP E + +FFGG + T +L LE + MFVI+SD+
Sbjct: 234 VFHANAFGFPPTEPSSTTRAYYGNINFFGGPSNASVKTYTKLRQLEDENKDAMFVIVSDV 293
Query: 293 WLDNEEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMI 352
WLD +V+ K V+ G+ P+ F+ GNF S P + +L+ L +I
Sbjct: 294 WLDQVQVLEKFHVMFSGYSPAP--PTCFILCGNFSSAP--YGKNQVQALKDSLKSLADII 349
Query: 353 AAHPRLKEHSRFLFIPGPDDAGPSTVLPRCALPKYLTEELQKYIPNAIFSSNPCRIKFYT 412
+P + + SRF+F+PGP+D G ++LPR L + +T+E ++ +P ++F++NPCRI++ T
Sbjct: 350 CEYPSIHQSSRFVFVPGPEDPGFGSILPRPPLAESITQEFRQRVPFSVFTTNPCRIQYCT 409
Query: 413 QEIVFFRQDLLYRMRRSCLIPPSREETDDPFEHLVATITHQSHLCPLPLTVQPIIWNYDH 472
QEI+ FR+DL+ +M R+C+ PS D P H V TI Q HL PLPL V P+ W YD+
Sbjct: 410 QEIIIFREDLVNKMCRNCVRFPS-SSLDIP-THFVKTILSQGHLAPLPLYVCPVHWAYDY 467
Query: 473 SLHLYPTPHAIVLADKSEQKAFKYTGITCFNPGSFS-SDSTFVAYRPCTQEVEFSAL 528
+L +YP P +V+ADK + T C NPGSF S F + P ++ VE S L
Sbjct: 468 TLRVYPVPDLLVIADKYDPFTVTNTDCLCINPGSFPRSGFAFKVFYPSSKTVEDSKL 524
>sp|P56282|DPOE2_HUMAN DNA polymerase epsilon subunit 2 OS=Homo sapiens GN=POLE2 PE=1 SV=2
Length = 527
Score = 299 bits (766), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 183/536 (34%), Positives = 289/536 (53%), Gaps = 31/536 (5%)
Query: 6 RKKIQKKMKIRGYGLRMDALDEILSFVNRFPDAE-DEAIDLLLDQFEHESSLKSSIIDKE 64
R + K+RG LR +A+ + + + E ++ ++ +++ E + L S++I++
Sbjct: 7 RSRALSAFKLRGLLLRGEAIKYLTEALQSISELELEDKLEKIINAVEKQP-LSSNMIERS 65
Query: 65 SVNRVTSVLLQAEAAAEGDSGSASN--HSAIRVIDAFLVPKFRYDSIKKHF----YQHAG 118
V EAA + S S +I AF +P+F Y+S +K F +
Sbjct: 66 VV----------EAAVQECSQSVDETIEHVFNIIGAFDIPRFVYNSERKKFLPLLMTNHP 115
Query: 119 SLPIHGEASAKAALYRDRFLLLFQRVSRDQHFSRPSFDVVNSEFGS-CEISTIQSLVGQT 177
+ + G KA ++R+R+ +L QR R + F+ P E GS ++ TI++L+G T
Sbjct: 116 APNLFGTPRDKAEMFRERYTILHQRTHRHELFTPPVIGSHPDESGSKFQLKTIETLLGST 175
Query: 178 ---GRRWVMGVISQLEDGHFYLEDLAASVEIDLSKAKITTGFFTENTIVVAEGEMLVDGI 234
G V+G+I+QL++G F+LED +V++DLSKA+ +G +TE V+AEG D +
Sbjct: 176 TKIGDAIVLGMITQLKEGKFFLEDPTGTVQLDLSKAQFHSGLYTEACFVLAEG-WFEDQV 234
Query: 235 FQVITCGFPPLEDRDQSLKLLAGYDFFGG-GTLKKEDTLRLADLEKRAANDMFVILSDIW 293
F V GFPP E + +FFGG + + +L LE+ + MFV LSD+W
Sbjct: 235 FHVNAFGFPPTEPSSTTRAYYGNINFFGGPSNTSVKTSAKLKQLEEENKDAMFVFLSDVW 294
Query: 294 LDNEEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIA 353
LD EV+ KL ++ G+ P+ F+ GNF S P + +L+ L +I
Sbjct: 295 LDQVEVLEKLRIMFAGYSPAP--PTCFILCGNFSSAP--YGKNQVQALKDSLKTLADIIC 350
Query: 354 AHPRLKEHSRFLFIPGPDDAGPSTVLPRCALPKYLTEELQKYIPNAIFSSNPCRIKFYTQ 413
+P + + SRF+F+PGP+D G ++LPR L + +T E ++ +P ++F++NPCRI++ TQ
Sbjct: 351 EYPDIHQSSRFVFVPGPEDPGFGSILPRPPLAESITNEFRQRVPFSVFTTNPCRIQYCTQ 410
Query: 414 EIVFFRQDLLYRMRRSCLIPPSREETDDPFEHLVATITHQSHLCPLPLTVQPIIWNYDHS 473
EI FR+DL+ +M R+C+ PS H V TI Q HL PLPL V P+ W YD++
Sbjct: 411 EITVFREDLVNKMCRNCVRFPSSNLAIP--NHFVKTILSQGHLTPLPLYVCPVYWAYDYA 468
Query: 474 LHLYPTPHAIVLADKSEQKAFKYTGITCFNPGSFS-SDSTFVAYRPCTQEVEFSAL 528
L +YP P +V+ADK + T C NPGSF S +F + P + VE S L
Sbjct: 469 LRVYPVPDLLVIADKYDPFTTTNTECLCINPGSFPRSGFSFKVFYPSNKTVEDSKL 524
>sp|P0CN24|DPB2_CRYNJ DNA polymerase epsilon subunit B OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=DPB2 PE=3 SV=1
Length = 541
Score = 278 bits (710), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 160/458 (34%), Positives = 248/458 (54%), Gaps = 17/458 (3%)
Query: 82 GDSGSASNHSAIRVIDAFLVPKFRYDSIKKHFYQHAGSLPIHGEASAKAALYRDRFLLLF 141
D + S V+D+F +P RYD ++ F Q + G+AS+++A R+R+ ++
Sbjct: 87 ADPSEVNVESHFSVVDSFDMPAMRYDPVRSGFVQSKAQPSVAGQASSRSAFLRERWAIIK 146
Query: 142 QRVSRDQHFSRPSFDVVNSEFGSCEISTIQSLVGQTGRRWVM-GVISQLEDGHFYLEDLA 200
+ + R+++F+ P+ + ++++I++L+G+ G+ +++ G++++ E+G LED
Sbjct: 147 EIILRNENFTPPAIGG-HDRANYLKLTSIRNLLGRAGQLFLLFGMLARNEEGKLCLEDGE 205
Query: 201 ASVEIDLSKAKITTGFFTENTIVVAEGEMLVDGIFQVITCGFPPLEDRDQSLKLLAGYDF 260
+ V +D+ A G FTE +V+ EGE V+ +V+ G PP E R+ + L DF
Sbjct: 206 SRVVLDMEDAVPGEGLFTEGCMVLIEGEYTVEETVRVLAMGHPPSERRNIARSLHGHVDF 265
Query: 261 FGGG--TLKKEDTLRLADLEKRAANDMFVILSDIWLDNEEVMGKLEVVLDGF-ESVEVVP 317
GGG +LK+E L + FVILSD+WLD+ M L + +G+ + E P
Sbjct: 266 LGGGAVSLKEEQKYNPTVLANTQIS--FVILSDVWLDHPRTMPALRQMFEGYANTAEYRP 323
Query: 318 SLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHSRFLFIPGPDDAGPST 377
+FV GNFC F L +++ + P L S F+F+PGP D ST
Sbjct: 324 MVFVLCGNFCQGGWE-GQEGLKRYSRGFNSLAELLQSIPLLHS-SHFVFVPGPSDPWSST 381
Query: 378 VLPRCALPKYLTEELQKYIPNAIFSSNPCRIKFYTQEIVFFRQDLLYRMRRSCLIPPSRE 437
LPR +LP T L IPNA F SNPCR+K++ EIV R+DL+ +M R+ ++ E
Sbjct: 382 TLPRPSLPSAFTTRLSNRIPNARFVSNPCRLKYFGMEIVICREDLMGKMMRNLVVVKEGE 441
Query: 438 ETDDPFEHLVATITHQSHLCPLPLTVQPIIWNYDHSLHLYPTPHAIVLADKSEQKAFKYT 497
E + +LV TI Q+HL PLP++V+P +W YDH+L LYP P A+VLADK E+ Y
Sbjct: 442 EMNMK-RYLVQTILDQAHLSPLPISVRPTLWEYDHALRLYPMPSAVVLADKYERYELTYE 500
Query: 498 GITCFNPGSFSS-------DSTFVAYRPCTQEVEFSAL 528
G FNPG F + + Y P T E S L
Sbjct: 501 GCHVFNPGKFVGGIGEDGWEFEWSMYYPATGRSERSVL 538
>sp|P0CN25|DPB2_CRYNB DNA polymerase epsilon subunit B OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=DPB2 PE=3 SV=1
Length = 541
Score = 278 bits (710), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 160/458 (34%), Positives = 248/458 (54%), Gaps = 17/458 (3%)
Query: 82 GDSGSASNHSAIRVIDAFLVPKFRYDSIKKHFYQHAGSLPIHGEASAKAALYRDRFLLLF 141
D + S V+D+F +P RYD ++ F Q + G+AS+++A R+R+ ++
Sbjct: 87 ADPSEVNVESHFSVVDSFDMPAMRYDPVRSGFVQSKAQPSVAGQASSRSAFLRERWAIIK 146
Query: 142 QRVSRDQHFSRPSFDVVNSEFGSCEISTIQSLVGQTGRRWVM-GVISQLEDGHFYLEDLA 200
+ + R+++F+ P+ + ++++I++L+G+ G+ +++ G++++ E+G LED
Sbjct: 147 EIILRNENFTPPAIGG-HDRANYLKLTSIRNLLGRAGQLFLLFGMLARNEEGKLCLEDGE 205
Query: 201 ASVEIDLSKAKITTGFFTENTIVVAEGEMLVDGIFQVITCGFPPLEDRDQSLKLLAGYDF 260
+ V +D+ A G FTE +V+ EGE V+ +V+ G PP E R+ + L DF
Sbjct: 206 SRVVLDMEDAVPGEGLFTEGCMVLIEGEYTVEETVRVLAMGHPPSERRNIARSLHGHVDF 265
Query: 261 FGGG--TLKKEDTLRLADLEKRAANDMFVILSDIWLDNEEVMGKLEVVLDGF-ESVEVVP 317
GGG +LK+E L + FVILSD+WLD+ M L + +G+ + E P
Sbjct: 266 LGGGAVSLKEEQKYNPTVLANTQIS--FVILSDVWLDHPRTMPALRQMFEGYANTAEYRP 323
Query: 318 SLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHSRFLFIPGPDDAGPST 377
+FV GNFC F L +++ + P L S F+F+PGP D ST
Sbjct: 324 MVFVLCGNFCQGGWE-GQEGLKRYSRGFNSLAELLQSIPLLHS-SHFVFVPGPSDPWSST 381
Query: 378 VLPRCALPKYLTEELQKYIPNAIFSSNPCRIKFYTQEIVFFRQDLLYRMRRSCLIPPSRE 437
LPR +LP T L IPNA F SNPCR+K++ EIV R+DL+ +M R+ ++ E
Sbjct: 382 TLPRPSLPSAFTTRLSNRIPNARFVSNPCRLKYFGMEIVICREDLMGKMMRNLVVVKEGE 441
Query: 438 ETDDPFEHLVATITHQSHLCPLPLTVQPIIWNYDHSLHLYPTPHAIVLADKSEQKAFKYT 497
E + +LV TI Q+HL PLP++V+P +W YDH+L LYP P A+VLADK E+ Y
Sbjct: 442 EMNMK-RYLVQTILDQAHLSPLPISVRPTLWEYDHALRLYPMPSAVVLADKYERYELTYE 500
Query: 498 GITCFNPGSFSS-------DSTFVAYRPCTQEVEFSAL 528
G FNPG F + + Y P T E S L
Sbjct: 501 GCHVFNPGKFVGGIGEDGWEFEWSMYYPATGRSERSVL 538
>sp|O94263|DPB2_SCHPO DNA polymerase epsilon subunit B OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=dpb2 PE=1 SV=1
Length = 594
Score = 254 bits (648), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 148/442 (33%), Positives = 244/442 (55%), Gaps = 30/442 (6%)
Query: 89 NHSAIRVIDAFLVPKFRYDSIKKHFYQHAGSLPIHGEASAKAALYRDRFLLLFQRVSRDQ 148
N RV+DAF +PKF+YDS +K F S + ASA + RF +++ R+ R++
Sbjct: 135 NEKYFRVLDAFKMPKFKYDSSRKVFVLSKQSPTLMASASACTDMLNRRFNVVYSRILRNE 194
Query: 149 HFSRPSFDVVNSEFGSCEISTIQSLVGQTGRRWVM-GVISQLEDGHFYLEDLAASVEIDL 207
F PSF S+ G+ +++ I++L+G+ G +++ G+++ DG +LEDL + V++D+
Sbjct: 195 SFQTPSFSGSFSQTGTYQLTPIRNLLGRAGNTFLLFGLLTIAPDGTLWLEDLDSQVQLDV 254
Query: 208 SKAKITTGFFTENTIVVAEGEMLVDGIFQVITCGFPPLEDRDQSLKLLAGYDFFGGGTLK 267
S+A+ G F +V+ G+ L G+F V G PP+E RD SLK L D G
Sbjct: 255 SQAEQGFGLFCPGCLVLVNGQFLSSGLFLVFELGHPPIERRDASLKALNNLDILGLNMDA 314
Query: 268 KEDTLRLADLEKRAANDMFVILSDIWLDNEEVMGKLEVVLDGFESVEVVPSLFVFMGNFC 327
K+ L L E+ + FV +S++ LDN + LE + +ES E VP + G+F
Sbjct: 315 KQLAL-LRHAEQAYQSQAFVCISEVHLDNHQTFYALEKIFQKYESSEAVPFCIILCGSFM 373
Query: 328 SHPCNLSFH-SFSSLRLQ--FGKLGQMIAAHPRLKEHSRFLFIPGPDDAGPS---TVLPR 381
S +FH S SS++ + F KL + P++ E ++F+F+PGP+D + +++P+
Sbjct: 374 SS----AFHNSGSSIQYKEGFNKLAASLEKFPKICEKTKFIFVPGPNDPWTTNGISLMPK 429
Query: 382 CALPKYLTEELQKYIPNAIFSSNPCRIKFYTQEIVFFRQDLLYRMRRSCL---------- 431
++P + +Q+ + IF+SNPCRI F++QE++ +R D+ R +R+ L
Sbjct: 430 HSIPLHFVNRIQRVCKHTIFASNPCRIIFFSQEVLIYRDDISGRFQRNSLKFGKTPQGTS 489
Query: 432 ----IPPSREETDDPFEHLVATITHQSHLCPLPLTVQPIIWNYDHSLHLYPTPHAIVLAD 487
IP + ++ LV T+ QSHL P P +PI+W++D++L ++P P + L D
Sbjct: 490 NINSIPLAEQQVHQQ-RKLVKTVLDQSHLSPFPSRTRPILWDFDYALSVFPLPSCMGLID 548
Query: 488 KSEQKAF--KYTGITCFNPGSF 507
SE AF Y G FNPG+
Sbjct: 549 -SESSAFDVHYGGCPTFNPGAL 569
>sp|Q19196|DPOE2_CAEEL Probable DNA polymerase epsilon subunit 2 OS=Caenorhabditis elegans
GN=pole-2 PE=3 SV=2
Length = 534
Score = 198 bits (503), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 156/537 (29%), Positives = 267/537 (49%), Gaps = 48/537 (8%)
Query: 6 RKKIQKKMKIRGYGLRMDALDEILS-FVNRFPDAEDEAIDLLLDQFEHESSLKSSIIDKE 64
R++I K +I + L+ +A+ + F++ + + + +++ + ++ L+SS+I +E
Sbjct: 11 RREIVKTFQIHAFELKKEAVKLCVKLFLDHDKETRKKWTNKMIELLKKQT-LQSSLISEE 69
Query: 65 SVNRVTSVLLQAEAAAEGDSGSASNHSAIRVIDAFLVPKFRYDSIKKHFYQHAGSLPIHG 124
+ Q ++ D+G N V DAF + + +D+ + +
Sbjct: 70 LIR---DTFRQCKSKGTQDAGKLLN-----VFDAFSLQPYDFDADLRKMVLRKEKTSLAA 121
Query: 125 EASAKAALYRDRFLLLFQRVSRDQHFSRPSFDVVNSEFGSCEI-----STIQSLVGQTGR 179
++S+ + R RF ++ QR R + N +F +CEI +QS+V
Sbjct: 122 DSSSFSHAARQRFFIVKQRAMR-------CASLKNFKFTTCEILGSSTKHLQSVV----- 169
Query: 180 RWVMGVISQLEDGHFYLEDLAASVEIDLSK-AKITTGFFTENTIVVAEGEMLVDGIFQVI 238
V+G+++Q + +++EDL+ SVE++ + K F E++I + EG + + V
Sbjct: 170 --VLGMLTQQKADCYHIEDLSGSVEVEFKEDTKFHHALFHEHSIAIFEG-TFENSVLTVN 226
Query: 239 TCGFPPLEDRDQSLK-LLAGYDFFGGG---TLKKEDTLRLADLEKRAANDMFVILSDIWL 294
P+E + + K L + ++FGG + D LR A L K+ + V LSD++L
Sbjct: 227 EVAMVPVESAEVTRKELSSNENWFGGDDKIAFRCSDRLRSA-LAKQEDTSL-VFLSDVFL 284
Query: 295 DNEEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAA 354
D+++VM + +L G++ + P VF GNFCS P + L F L +
Sbjct: 285 DDKKVMKAVFKLLQGYK--DQPPVAIVFCGNFCSRPRQTD--TIDLLDRGFRWLANQLTP 340
Query: 355 HPRLKEHSRFLFIPGPDDAGPSTVLPRCALPKYLTEELQKYIPNAIFSSNPCRIKFYTQE 414
+ E ++F+F+PGPDD TVLPR LP L + + I + F+SNPCRI+F +QE
Sbjct: 341 LRKDYEKTQFIFVPGPDDPFVDTVLPRPHLPSLLFKHISPII-SCTFASNPCRIQFASQE 399
Query: 415 IVFFRQDLLYRMRRSCLIPPSREETDDPFEHLVATITHQSHLCPLPLTVQPIIWNYDHSL 474
IV FR DL+ + R + + E + ++ Q+HLCPLP + P++ ++ HSL
Sbjct: 400 IVVFRSDLIKKTCRHSINSITVESIPSRYAR---SVLSQAHLCPLPQHITPVLPDFSHSL 456
Query: 475 HLYPTPHAIVLADKSEQKAFKYTGITCF--NPGSFS-SDSTFVAYRPCTQEVEFSAL 528
L+P P ++ AD+ E K G NPGSFS S+ TF Y PC VE S +
Sbjct: 457 SLHPLPDLLITADRFETFTEKVVGADTIVSNPGSFSRSNYTFHVYYPCQNRVEASQI 513
>sp|Q6FSK8|DPB2_CANGA DNA polymerase epsilon subunit B OS=Candida glabrata (strain ATCC
2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=DPB2 PE=3 SV=1
Length = 719
Score = 180 bits (457), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 141/517 (27%), Positives = 235/517 (45%), Gaps = 89/517 (17%)
Query: 94 RVIDAFLVPKFRYDSIKKH-FYQ----HAGSLPIHGEASAKAALYRDRFLLLFQRVSRDQ 148
R+I+ KF Y+ +K+ FYQ S+ A AK L+R R+ L R+ R++
Sbjct: 198 RIINTTDQKKFSYNPVKRQIFYQPPKDQLKSVLKIPNAQAKTDLFRTRYFLTRDRLLRNE 257
Query: 149 HF--SRPSFDVVNSEF---------------GSCEISTIQSLVGQTGRRW-VMGVISQLE 190
F S +F+ ++S I+ I++L+G+ G+ + ++GV+
Sbjct: 258 SFQSSHDTFNPLSSMIQLKNNINNNNQDDTPTGLSITQIKNLLGRDGQNFLILGVLKMNP 317
Query: 191 DGHFYLEDLAASVEIDLSKAKITTG-FFTENTIVVAEGEMLVDG-IFQVITCGFPPLEDR 248
G + LED + S++ID+S+ + G F+ IV+AEG G F V + FPP E R
Sbjct: 318 KGQWSLEDASGSIDIDISQTLPSPGLFYIPGAIVLAEGIYYTVGHTFAVTSMTFPPGERR 377
Query: 249 DQSLKLLAGYDFFG-GGT--------LKKEDTLRLADLEKRAANDMFVILS-DIWLDNEE 298
D++L + D G GT L E +RL LE+ + FV+L D++LD++
Sbjct: 378 DKTLDHIGNLDLLGIHGTEKSSYIPRLDNEIKIRLHLLEQDLTHQKFVLLGGDLFLDDQH 437
Query: 299 VMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHS-----FSSLRLQFGKLGQMIA 353
VM L+ V + + P++ V G+F S P + + S + + F L +M++
Sbjct: 438 VMDGLKKVFTKLD--QEAPTVIVLFGSFSSFPVHAAMSSKNISSTTEYKNNFDSLAEMLS 495
Query: 354 AHPRLKEHSRFLFIPGPDDA-------GPSTVLPRCALPKYLTEELQKYIPNAIFSSNPC 406
+ H+ + IPGP D G + LP+ ++P + ++ + K N ++SNP
Sbjct: 496 QFENIINHTHVVLIPGPHDPWVSLCSLGANGSLPQSSIPTHFSKRMNKICKNITWASNPT 555
Query: 407 RIKFYTQEIVFFRQDLLYRMRRSCLIPP-----------------SREETDDPF------ 443
RI + +QEIV FR + L +R ++ P + DD
Sbjct: 556 RIAYLSQEIVLFRDNFLELCKRHQILFPVVESKRAEDLAELEEQMANNSIDDTTILVDRI 615
Query: 444 --------------EHLVATITHQSHLCPLPLTVQPIIWNYDHSLHLYPTPHAIVLADKS 489
+V T+ Q HL P +++PI W+ DH+L LYP P ++LAD S
Sbjct: 616 ISEKQQLPAKVLESRKVVKTLLDQGHLSPFVDSIRPISWDMDHTLTLYPIPSTLILADMS 675
Query: 490 EQK-AFKYTGITCFNPGSF--SSDSTFVAYRPCTQEV 523
Y G NPG F + ++ ++P + V
Sbjct: 676 SAAYDLTYNGCKTINPGKFIHKRQARYIQFQPYLKSV 712
>sp|P24482|DPB2_YEAST DNA polymerase epsilon subunit B OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=DPB2 PE=1 SV=3
Length = 689
Score = 169 bits (428), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 145/517 (28%), Positives = 239/517 (46%), Gaps = 92/517 (17%)
Query: 94 RVIDAFLVPKFRYDSIKKHFY------QH-----AGSLPIHGEASAKAALYRDRFLLLFQ 142
+VI+A +F Y+ K F Q+ AG LP + K ++ R+ L
Sbjct: 171 KVINASQQQRFSYNPHKMQFIFVPNKKQNGLGGIAGFLP---DIEDKVQMFLTRYYLTND 227
Query: 143 RVSRDQHFSRPS-FDVVNS---------------EFGSCEISTIQSLVGQTGRRWVM-GV 185
RV R+++F F+ ++S + S I+ I++L+G+ + +++ G+
Sbjct: 228 RVMRNENFQNSDMFNPLSSMVSLQNELSNTNRQQQSSSMSITPIKNLLGRDAQNFLLLGL 287
Query: 186 ISQLEDGHFYLEDLAASVEIDLSKAKITTG-FFTENTIVVAEGEML-VDGIFQVITCGFP 243
+++ G++ LED + SVEID+S+ T G ++ +V+ EG V F V + P
Sbjct: 288 LNKNFKGNWSLEDPSGSVEIDISQTIPTQGHYYVPGCMVLVEGIYYSVGNKFHVTSMTLP 347
Query: 244 PLEDRDQSLKLLAGYDFFGG---------GTLKKEDTLRLADLEKRAANDMFVIL-SDIW 293
P E R+ +L+ + D G L K+ +RL LEK + FVIL ++++
Sbjct: 348 PGERREITLETIGNLDLLGIHGISNNNFIARLDKDLKIRLHLLEKELTDHKFVILGANLF 407
Query: 294 LDNEEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPC-----NLSFHSFSSLRLQFGKL 348
LD+ ++M L +L + P+L ++ G+F S P + + S + + F L
Sbjct: 408 LDDLKIMTALSKILQKLN--DDPPTLLIWQGSFTSVPVFASMSSRNISSSTQFKNNFDAL 465
Query: 349 GQMIAAHPRLKEHSRFLFIPGPDDA-------GPSTVLPRCALPKYLTEELQKYIPNAIF 401
+++ L E++ +FIPGP+D G S LP+ +P T+++ K N ++
Sbjct: 466 ATLLSRFDNLTENTTMIFIPGPNDLWGSMVSLGASGTLPQDPIPSAFTKKINKVCKNVVW 525
Query: 402 SSNPCRIKFYTQEIVFFRQDLLYRMRRSCLIPPSREETDDPFEH---------------- 445
SSNP RI + +QEIV FR DL R +R L P E D E+
Sbjct: 526 SSNPTRIAYLSQEIVIFRDDLSGRFKRHRLEFPFNESEDVYTENDNMMSKDTDIVPIDEL 585
Query: 446 ----------------LVATITHQSHLCPLPLTVQPIIWNYDHSLHLYPTPHAIVLAD-K 488
LV TI Q HL P +++PI W+ DH+L L P P +VL D
Sbjct: 586 VKEPDQLPQKVQETRKLVKTILDQGHLSPFLDSLRPISWDLDHTLTLCPIPSTMVLCDTT 645
Query: 489 SEQKAFKYTGITCFNPGSF--SSDSTFVAYRPCTQEV 523
S Q Y G NPGSF + + ++ Y P +++
Sbjct: 646 SAQFDLTYNGCKVINPGSFIHNRRARYMEYVPSSKKT 682
>sp|Q758V1|DPB2_ASHGO DNA polymerase epsilon subunit B OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=DPB2
PE=3 SV=1
Length = 677
Score = 159 bits (401), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 138/504 (27%), Positives = 222/504 (44%), Gaps = 94/504 (18%)
Query: 94 RVIDAFLVPKFRYDSIKKHF----YQHAGSLPIHG-----EASAKAALYRDRFLLLFQRV 144
+VID F +F YD K+ + + + + P+ A A + R+ L+ RV
Sbjct: 153 KVIDTFSQQQFTYDVTKRRYRLVQQRESAAGPLSTLLRIPSLEANLAQFPTRYHLVRDRV 212
Query: 145 SRDQHFSRPSFDVVN-------------------SEFGSCEISTIQSLVGQTGRRWVM-G 184
R+ F + DV N + I+ I++L+G+ G+ +++ G
Sbjct: 213 LRNASFQ--NDDVYNPLSSMQQLQQQLDAGGAPLASTAYMSITQIKNLLGRDGKNFLLLG 270
Query: 185 VISQLEDGHFYLEDLAASVEIDLSKAKITTG-FFTENTIVVAEGEMLVDG-IFQVITCGF 242
+I + G + LED + S+EID+S+ T G ++ IV+AEG G F+V +
Sbjct: 271 LIRKDSKGFWSLEDPSGSIEIDISETYPTKGTYYVPGCIVLAEGIYSSAGNRFRVSSITH 330
Query: 243 PPLEDRDQSLKLLAGYDFFGG---------GTLKKEDTLRLADLEKRAANDMFVILS-DI 292
PP E R+ L+ + D G L KE +RL LEK + FV L +I
Sbjct: 331 PPGERREAFLEAIGNLDLLGIHGPSNESYISRLDKELKIRLHYLEKELTDHRFVFLGGNI 390
Query: 293 WLDNEEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPC-----NLSFHSFSSLRLQFGK 347
+LD+ L + D E P++ V G+F S P + S S ++ R F
Sbjct: 391 FLDDTMTETALAKLFDVLEHDP--PTVLVLPGSFTSTPIYPSSDSKSSSSTAAYRANFDA 448
Query: 348 LGQMIAAHPRLKEHSRFLFIPGPDDA-------GPSTVLPRCALPKYLTEELQKYIPNAI 400
L ++++ + RL + F+FIPG +D G + LP+ +P ++ + + +
Sbjct: 449 LAKLLSKYERLINETTFVFIPGDNDPWGSMAYLGVAGTLPQHPIPGDFVTKVNRICKHVV 508
Query: 401 FSSNPCRIKFYTQEIVFFRQDLLYRMRRSCLIPPSREE-------------TDD------ 441
+ SNP RI + +QE+V R D+ R +R+ +I P+ EE DD
Sbjct: 509 WGSNPTRIAYLSQELVIMRDDMCNRFKRNSIIFPTVEEEQKQEYMLLQQELQDDERSSDL 568
Query: 442 -----------------PFEHLVATITHQSHLCPLPLTVQPIIWNYDHSLHLYPTPHAIV 484
+V TI Q HL P V+PI W+YD++LHL P P ++
Sbjct: 569 SISQLIKSRDQLPASVQESRKIVKTILDQQHLSPFTSQVRPITWDYDYTLHLSPIPSTMI 628
Query: 485 LADKSEQKA-FKYTGITCFNPGSF 507
+ D + K Y G NPGSF
Sbjct: 629 ICDPTAPKYDVTYNGCKSINPGSF 652
>sp|Q6CPH8|DPB2_KLULA DNA polymerase epsilon subunit B OS=Kluyveromyces lactis (strain
ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL
Y-1140 / WM37) GN=DPB2 PE=3 SV=1
Length = 710
Score = 158 bits (400), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 135/503 (26%), Positives = 225/503 (44%), Gaps = 92/503 (18%)
Query: 94 RVIDAFLVPKFRYDSIKKHFYQ-------HAGSLPIHG----EASAKAALYRDRFLLLFQ 142
+VIDAF F YD K+ + L I +K +L+ R+ ++
Sbjct: 186 KVIDAFNQQTFTYDHTKRQYIYVPRPKEVEKNMLSIAKLKLPNVESKVSLFTTRYHIIKD 245
Query: 143 RVSRDQHFSRPS-FDVVNS--EFGS---------------CEISTIQSLVGQTGRRWVM- 183
+V R++ F F+ ++S E G +I+ I++L+G G+ +++
Sbjct: 246 KVLRNEKFQNNDIFNPLSSIIEMGKHMNESDVSPLNSASYMKITQIKNLLGHDGKNFLLL 305
Query: 184 GVISQLEDGHFYLEDLAASVEIDLSKAKITTG-FFTENTIVVAEG-EMLVDGIFQVITCG 241
G++ Q G++ LED + S+E+ L +A T G ++ IV+ EG F V +
Sbjct: 306 GLLDQNSKGNWSLEDPSGSIELHLQQAIPTKGTYYVPGCIVLVEGIYYTASNTFVVSSIT 365
Query: 242 FPPLEDRDQSLKLLAGYDFFGG---------GTLKKEDTLRLADLEKRAANDMFVILS-D 291
PP E R+ +++ + D G L K+ +RL LE+ +++ FVIL D
Sbjct: 366 HPPGEKREDTIEAIGNLDLLGAYNPSNENYVARLDKDLKIRLHYLEQELSDNKFVILGGD 425
Query: 292 IWLDNEEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFS-----SLRLQFG 346
I+LD M L+ D + P VF G+F S P + S ++ + S + F
Sbjct: 426 IYLDEMTTMDGLKKTFDKLTTDP--PVAIVFNGSFVSVPVHPSLNAKNVSATVSYKNNFD 483
Query: 347 KLGQMIAAHPRLKEHSRFLFIPGPDDA-------GPSTVLPRCALPKYLTEELQKYIPNA 399
L +++ + L + +FIPGP+D G +T+ P+ +P T+++ +
Sbjct: 484 ALATLLSNYENLINDTHMIFIPGPNDPWTSMVGLGTTTMWPQKIIPSSFTQKMSRICRKV 543
Query: 400 IFSSNPCRIKFYTQEIVFFRQDLLYRMRRSCLIPPSREE-------------TDDP---- 442
+ SNP RI + +QEIV R DL R +R ++ P+ EE + +P
Sbjct: 544 HWGSNPLRIAYLSQEIVLTRDDLANRFKRYNIVFPTVEEEKYLENAELQEQYSRNPDVSV 603
Query: 443 -----FEH-----------LVATITHQSHLCPLPLTVQPIIWNYDHSLHLYPTPHAIVLA 486
F++ LV T+ Q HL P ++P +W+ D +L L P P +I+L
Sbjct: 604 GQLIAFKNNLPVSVLESRKLVKTLLDQQHLSPFSSRIRPTVWDLDFTLQLSPLPSSIMLC 663
Query: 487 DKSEQKAF--KYTGITCFNPGSF 507
D S AF Y G NPG F
Sbjct: 664 DTS-APAFDVTYNGCKTINPGRF 685
>sp|Q6BQR8|DPB2_DEBHA DNA polymerase epsilon subunit B OS=Debaryomyces hansenii (strain
ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=DPB2 PE=3 SV=1
Length = 669
Score = 148 bits (374), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 131/533 (24%), Positives = 239/533 (44%), Gaps = 104/533 (19%)
Query: 94 RVIDAFLVPKFRYDSIKKH--FYQHAGSLPIHGEASAKAALYRDRFLLLFQRVSRDQHFS 151
+VI+ P ++YD +K F + + ++ + +R+ L+ R+SR+++F
Sbjct: 141 KVINPDEQPNYKYDKHRKQLSFIPSTNAKRLANNLNSNVDYFNNRYHLISDRLSRNENFQ 200
Query: 152 RPSFDVVNS-------EFGSCEISTIQSLVGQTGRRWVM-GVISQLEDGHFYLEDLAASV 203
+PSF ++S + EI+ I++++G+ G ++++ G++S+ + F LED +
Sbjct: 201 KPSFSSISSISKSLSHNNKTNEITLIKNVLGRDGSKFILFGLLSKNANDDFILEDSTDHI 260
Query: 204 EIDLSKAKITTG-FFTENTIVVAEG-----------EMLVDGIFQVITCGFPPLEDRDQS 251
E++L++A T G F+ V+ EG ++ G F V G PP E R+ S
Sbjct: 261 ELNLTQAYKTEGSFYCPGMFVIVEGIYSASGGSMSNANVIGGCFHVSNIGHPPAERRELS 320
Query: 252 LKLLAGYDFFG-----------------GGTLKKEDTLRLADLEKRAANDMFVIL-SDIW 293
++ DF G +LKK +L LEK N +IL SD +
Sbjct: 321 MENYGNLDFMGINRDNDTNNNDNHILRVNKSLKK----KLVSLEKTLVNHKLIILGSDCF 376
Query: 294 LDNEEVM-------GKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSL----- 341
LD+ +++ GK+E L E+ + P + V +G+F S+P + S +++
Sbjct: 377 LDDLKILDGIKKLFGKIESSLIDDETNQ--PLVIVLIGSFTSNPLTPTNSSVANVSNTEN 434
Query: 342 -RLQFGKLGQMIAAHPRLKEHSRFLFIPGPDDAGPST---------VLPRCALPKYLTEE 391
+ F L +++ P + + + IPG +D S+ P+ ++PK T
Sbjct: 435 YKSNFDNLSNILSNFPNIVQKVKIALIPGINDPWQSSHSLGGSNLNAFPQRSIPKIFTNR 494
Query: 392 LQKYIP--NAIFSSNPCRIKFYTQEIVFFRQDLLYRMRRSCLI----------PPSREET 439
L++ +P N I NP RI + +QEIV + D++ + +R+ +I +++
Sbjct: 495 LERLLPKGNLIAGWNPLRINYLSQEIVLMKDDIINKFKRNDIIFSNDLELEQLKLQKDKN 554
Query: 440 DDPFEH--------------------LVATITHQSHLCPLPLTVQPIIWNYDHSLHLYPT 479
DD H LV TI Q +L P ++ I N+D+SL + P
Sbjct: 555 DDGLIHATDINTKEPHISPKIKQARKLVKTILDQGNLQPFLKDIRIINTNFDYSLRIEPL 614
Query: 480 PHAIVLADKS-EQKAFKYTGITCFNPGSFSSDS---TFVAYRPCTQEVEFSAL 528
P ++L D + Y G N G ++ +FV Y P ++ EF +
Sbjct: 615 PTILILNDATFPTFEVTYNGCKVINTGKLVGNNRKLSFVEYFPSGKKFEFKEV 667
>sp|Q6C030|DPB2_YARLI DNA polymerase epsilon subunit B OS=Yarrowia lipolytica (strain
CLIB 122 / E 150) GN=DPB2 PE=3 SV=1
Length = 652
Score = 104 bits (259), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 90/367 (24%), Positives = 163/367 (44%), Gaps = 48/367 (13%)
Query: 94 RVIDAFLVPKFRYDSIKKHFYQHAGSLPIHGEASAKAALYRDRFLLLFQRVSRDQHFSRP 153
+VI AF P F Y++ ++ F + + A + + ++ R+ L++ R+ R
Sbjct: 142 KVISAFDQPLFHYNARQQRFEKRKTKPTLFANAQSASNMFLTRYHLVYNRLLR------- 194
Query: 154 SFDVVNSEFGSCEISTIQSLVGQTGRRWVMGVISQLEDGHFYLEDLAASVEIDLSKA-KI 212
N + +I++I+SL+G+ G + G++S+ + L+D + + L+ K
Sbjct: 195 -----NDDTTDLKITSIRSLIGRQGEFSIFGMLSKNPEQKICLQDDTGRILLILAAGCKP 249
Query: 213 TTG-FFTENTIVVAEGEMLVDG---IFQVITCGFPPLEDRDQSLKLLAGYDFFG------ 262
G ++ E + V+ G + G +F VIT G P E R +++ D+ G
Sbjct: 250 DPGVYYPEGSFVICNGRYMKSGDAEVFVVITMGPPVAEKRQETITAYGNMDYLGLHGNPH 309
Query: 263 GGTLKKEDTLRLADL---EKRAANDMFVILS-DIWLDNEEVMGKLEVVLDGFE-----SV 313
G +++ + A + EKR + ++ D++LDN + L+ V E S
Sbjct: 310 GSVVRRIERQVEASMLAEEKRLVDQKVIVFGGDMYLDNPLTLKALQKVFSTIELEFQDSG 369
Query: 314 EVVPSLFVFMGNFCSH--PCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHSRFLFIPGPD 371
P VF G+F S P +L F L F + +I + +F+PG
Sbjct: 370 TKKPLAMVFSGDFTSQYQPPHLYKKGFDKLEELFKEFSSIITG-------VKIIFVPGQR 422
Query: 372 DAGPST------VLPRCALPKYLTEELQKYIPNAI-FSSNPCRIKFYTQEIVFFRQDLLY 424
D +T V+P LP + + + + SSNPCR+ + TQ++VF+R L
Sbjct: 423 DPWTNTFPTQNAVVPLQPLPTTMINRVARLCGEDVSMSSNPCRMAYLTQDMVFYRDGLSE 482
Query: 425 RMRRSCL 431
R+R+ L
Sbjct: 483 RLRKCNL 489
Score = 49.3 bits (116), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
Query: 446 LVATITHQSHLCPLPLTVQPIIWNYDHSLHLYPTPHAIVLADKSEQK-AFKYTGITCFNP 504
+V TI Q HL P +P+ W+YD +L L P P + + D K + +Y NP
Sbjct: 565 IVRTICDQGHLSPFNRHDRPVAWDYDETLWLSPLPTILFMVDTHAPKFSLRYEECMVVNP 624
Query: 505 GSFSSD--STFVAYRPCTQEVE 524
G F + +++V Y P + V+
Sbjct: 625 GPFLNRKIASWVEYDPSKKTVK 646
>sp|B4R8T7|ISPH_PHEZH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase
OS=Phenylobacterium zucineum (strain HLK1) GN=ispH PE=3
SV=1
Length = 314
Score = 36.6 bits (83), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 62/146 (42%), Gaps = 19/146 (13%)
Query: 173 LVGQTGRRWVMGVISQLEDGHFYLEDLAASVEIDLSKAKITTGFFTENTIVVAEGEMLVD 232
L+G G V+G + QL +G L + A + F T+ T+ V + +V+
Sbjct: 124 LIGHAGHPEVVGTMGQLPEGAVALIETVADAMAFQPRDPANVAFVTQTTLSVDDTAEIVE 183
Query: 233 GI---FQVITCGFPPLED-------RDQSLKLLAGYD--FFGGGTLKKEDTLRLADLEKR 280
+ F I P ED R +++K +A G+ +++RLA++ +R
Sbjct: 184 ALRARFPAIAA--PHKEDICYATTNRQEAVKAIAAKAQVLVVLGSANSSNSVRLAEVGRR 241
Query: 281 AANDMFVI-----LSDIWLDNEEVMG 301
A ++I L WL+ E +G
Sbjct: 242 AGARAYLIDDAEGLDFTWLEGVETVG 267
>sp|A1WRJ3|MUTS_VEREI DNA mismatch repair protein MutS OS=Verminephrobacter eiseniae
(strain EF01-2) GN=mutS PE=3 SV=1
Length = 871
Score = 36.6 bits (83), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 37/87 (42%), Gaps = 9/87 (10%)
Query: 325 NFCSHPC---NLSFHSFSSLRLQFGKLGQMIAAHPRLKEHSRFLFIPGPDDAGPSTVLPR 381
F S PC H RL G IA H RL ++R I GP+ G ST + +
Sbjct: 583 QFVSEPCIEIEGGRHPVVEARLAETASGSFIANHTRLNANTRMQLITGPNMGGKSTYMRQ 642
Query: 382 CALPKYLTEELQKYIPNAIFSSNPCRI 408
AL L + ++P ++ CR+
Sbjct: 643 VAL-IVLLASIGSHVP-----ASSCRL 663
>sp|O27456|DP2S_METTH DNA polymerase II small subunit OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=polB PE=3 SV=1
Length = 482
Score = 35.4 bits (80), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 57/151 (37%), Gaps = 7/151 (4%)
Query: 363 RFLFIPGPDDAGPSTVLPRCALPKYLTEELQKYIPNAIFSSNPCRIKFYTQEIVFFRQDL 422
+ + IPG D+ P+ A+P+ + L I N F SNP + + +
Sbjct: 312 KIVMIPGNHDSS-RIAEPQPAIPEEYAKSLYS-IRNIEFLSNPSLVSLDGVRTLIYHGRS 369
Query: 423 LYRMRRSCLIPPSREETDDPFEHLVATITHQSHLCPLPLTVQPIIWNYDHSLHLYPTPHA 482
M S S E +D E L+ + HL P+ P+ + L + PH
Sbjct: 370 FDDMAMSVN-GLSHERSDLIMEELL----EKRHLAPIYGERTPLASEIEDHLVIDEVPHV 424
Query: 483 IVLADKSEQKAFKYTGITCFNPGSFSSDSTF 513
+ KY G+ N G+F S + F
Sbjct: 425 LHTGHVHINAYKKYKGVHLINSGTFQSQTEF 455
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.138 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 195,143,711
Number of Sequences: 539616
Number of extensions: 8291335
Number of successful extensions: 19024
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 18939
Number of HSP's gapped (non-prelim): 25
length of query: 528
length of database: 191,569,459
effective HSP length: 122
effective length of query: 406
effective length of database: 125,736,307
effective search space: 51048940642
effective search space used: 51048940642
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)