Query 009713
Match_columns 528
No_of_seqs 196 out of 428
Neff 7.0
Searched_HMMs 46136
Date Thu Mar 28 16:26:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009713.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009713hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3818 DNA polymerase epsilon 100.0 9E-128 2E-132 973.9 43.3 510 3-528 6-523 (525)
2 PTZ00235 DNA polymerase epsilo 100.0 1.3E-66 2.8E-71 516.2 25.3 242 282-524 26-285 (291)
3 PRK04036 DNA polymerase II sma 100.0 7.9E-54 1.7E-58 465.0 43.0 450 7-525 2-499 (504)
4 KOG1625 DNA polymerase alpha-p 100.0 5.8E-41 1.3E-45 350.8 28.5 311 176-519 243-578 (600)
5 COG1311 HYS2 Archaeal DNA poly 100.0 2.6E-39 5.6E-44 337.0 27.7 357 116-525 91-467 (481)
6 PF04042 DNA_pol_E_B: DNA poly 100.0 3.8E-39 8.3E-44 312.9 11.2 203 286-493 1-208 (209)
7 cd07386 MPP_DNA_pol_II_small_a 100.0 4.5E-31 9.7E-36 262.4 21.6 226 287-523 2-238 (243)
8 cd07387 MPP_PolD2_C PolD2 (DNA 100.0 4.9E-29 1.1E-33 247.8 22.8 228 285-525 1-254 (257)
9 COG5214 POL12 DNA polymerase a 100.0 1.1E-26 2.3E-31 234.9 22.1 315 176-519 201-551 (581)
10 KOG2732 DNA polymerase delta, 99.9 1.6E-25 3.4E-30 227.8 28.1 347 127-525 27-430 (435)
11 PF12213 Dpoe2NT: DNA polymera 99.5 2E-13 4.4E-18 110.0 8.5 70 3-73 3-73 (73)
12 PRK05340 UDP-2,3-diacylglucosa 98.8 1.8E-07 3.9E-12 93.0 16.6 207 285-522 2-234 (241)
13 PRK09453 phosphodiesterase; Pr 98.8 2.9E-07 6.4E-12 87.5 16.4 161 285-525 2-167 (182)
14 cd07398 MPP_YbbF-LpxH Escheric 98.7 4.7E-08 1E-12 94.9 8.4 199 287-507 1-217 (217)
15 TIGR01854 lipid_A_lpxH UDP-2,3 98.7 3E-07 6.4E-12 90.9 14.1 205 287-518 2-228 (231)
16 cd00841 MPP_YfcE Escherichia c 98.6 1.4E-06 3E-11 80.3 14.2 147 285-524 1-153 (155)
17 cd07394 MPP_Vps29 Homo sapiens 98.5 7.5E-06 1.6E-10 77.8 18.5 148 286-524 2-160 (178)
18 COG2908 Uncharacterized protei 98.5 7.6E-07 1.6E-11 87.1 10.0 212 287-523 1-231 (237)
19 PF12850 Metallophos_2: Calcin 98.4 5.9E-07 1.3E-11 82.0 7.4 150 285-521 2-156 (156)
20 TIGR00040 yfcE phosphoesterase 98.4 2E-05 4.4E-10 73.0 17.5 150 285-524 2-156 (158)
21 COG0622 Predicted phosphoester 98.3 1.5E-05 3.3E-10 75.3 15.2 155 285-527 3-162 (172)
22 cd07402 MPP_GpdQ Enterobacter 98.2 5.1E-05 1.1E-09 74.7 15.1 75 285-374 1-83 (240)
23 PHA02546 47 endonuclease subun 98.1 3.6E-05 7.8E-10 80.6 12.7 117 285-417 2-127 (340)
24 PF14582 Metallophos_3: Metall 98.1 2.7E-05 6E-10 75.6 10.5 51 476-527 203-254 (255)
25 cd07388 MPP_Tt1561 Thermus the 98.0 0.00059 1.3E-08 67.3 19.5 46 478-525 178-223 (224)
26 cd07400 MPP_YydB Bacillus subt 97.9 5.2E-05 1.1E-09 68.8 9.2 74 286-373 1-80 (144)
27 cd07379 MPP_239FB Homo sapiens 97.8 0.00032 7E-09 63.2 12.5 63 286-375 2-64 (135)
28 cd07392 MPP_PAE1087 Pyrobaculu 97.8 0.00038 8.3E-09 65.4 13.4 27 479-505 161-188 (188)
29 cd00840 MPP_Mre11_N Mre11 nucl 97.8 6.3E-05 1.4E-09 72.9 7.3 79 285-375 1-90 (223)
30 COG2129 Predicted phosphoester 97.7 0.0029 6.2E-08 61.7 17.3 201 285-526 5-222 (226)
31 cd08165 MPP_MPPE1 human MPPE1 97.5 0.00063 1.4E-08 63.3 9.5 67 315-393 37-103 (156)
32 cd07385 MPP_YkuE_C Bacillus su 97.3 0.0014 2.9E-08 63.8 10.4 110 285-419 3-113 (223)
33 TIGR00619 sbcd exonuclease Sbc 97.3 0.00088 1.9E-08 67.3 9.0 102 285-407 2-111 (253)
34 PRK11148 cyclic 3',5'-adenosin 97.3 0.00066 1.4E-08 68.8 8.1 77 283-374 14-98 (275)
35 COG0420 SbcD DNA repair exonuc 97.3 0.0016 3.5E-08 69.4 10.7 85 285-381 2-95 (390)
36 cd07395 MPP_CSTP1 Homo sapiens 97.2 0.0012 2.7E-08 66.1 8.7 84 283-374 4-99 (262)
37 cd07396 MPP_Nbla03831 Homo sap 97.2 0.00097 2.1E-08 67.3 7.8 76 285-374 2-86 (267)
38 PRK11340 phosphodiesterase Yae 97.0 0.0016 3.5E-08 66.0 7.5 117 284-422 50-168 (271)
39 cd07391 MPP_PF1019 Pyrococcus 97.0 0.0017 3.8E-08 61.1 7.3 75 288-375 2-89 (172)
40 cd07384 MPP_Cdc1_like Saccharo 97.0 0.0011 2.3E-08 62.7 5.6 58 315-375 44-101 (171)
41 COG1409 Icc Predicted phosphoh 96.9 0.0038 8.3E-08 62.7 8.5 76 285-375 2-79 (301)
42 cd07404 MPP_MS158 Microscilla 96.8 0.0064 1.4E-07 56.5 8.6 28 477-504 135-163 (166)
43 PRK10966 exonuclease subunit S 96.8 0.0053 1.2E-07 65.9 9.1 100 285-406 2-109 (407)
44 PF00149 Metallophos: Calcineu 96.7 0.008 1.7E-07 53.4 8.4 77 285-374 2-78 (200)
45 cd07383 MPP_Dcr2 Saccharomyces 96.7 0.0075 1.6E-07 57.9 8.7 75 284-373 3-88 (199)
46 cd07401 MPP_TMEM62_N Homo sapi 96.6 0.006 1.3E-07 61.3 8.0 85 286-374 2-89 (256)
47 cd07424 MPP_PrpA_PrpB PrpA and 96.6 0.044 9.5E-07 53.1 13.7 31 478-508 167-197 (207)
48 cd07390 MPP_AQ1575 Aquifex aeo 96.6 0.016 3.5E-07 54.3 10.3 102 287-419 2-114 (168)
49 cd07399 MPP_YvnB Bacillus subt 96.6 0.0042 9.1E-08 60.7 6.1 79 285-374 2-82 (214)
50 cd04490 PolII_SU_OBF PolII_SU_ 96.6 0.02 4.4E-07 47.1 9.2 66 181-246 3-78 (79)
51 TIGR03729 acc_ester putative p 96.5 0.0063 1.4E-07 60.3 7.2 72 285-374 1-74 (239)
52 cd08166 MPP_Cdc1_like_1 unchar 96.5 0.0064 1.4E-07 58.6 6.5 70 316-396 42-111 (195)
53 TIGR00583 mre11 DNA repair pro 96.5 0.009 2E-07 64.0 8.2 88 285-375 5-124 (405)
54 cd07393 MPP_DR1119 Deinococcus 96.4 0.011 2.3E-07 58.5 7.6 73 287-374 2-84 (232)
55 PRK09968 serine/threonine-spec 96.2 0.02 4.4E-07 56.1 8.5 38 479-517 179-216 (218)
56 TIGR00024 SbcD_rel_arch putati 96.1 0.015 3.3E-07 57.4 7.4 78 284-375 15-103 (225)
57 cd07423 MPP_PrpE Bacillus subt 95.8 0.15 3.2E-06 50.5 12.8 31 478-508 180-210 (234)
58 COG1407 Predicted ICC-like pho 95.8 0.033 7.2E-07 55.0 8.0 89 282-382 18-118 (235)
59 cd08163 MPP_Cdc1 Saccharomyces 95.7 0.13 2.9E-06 51.8 11.9 87 316-418 45-131 (257)
60 PHA02239 putative protein phos 95.2 0.072 1.6E-06 53.0 8.2 72 285-374 2-73 (235)
61 cd07403 MPP_TTHA0053 Thermus t 95.1 0.031 6.8E-07 50.1 4.8 29 480-508 92-125 (129)
62 PRK13254 cytochrome c-type bio 94.7 0.18 4E-06 46.5 8.6 62 178-241 51-120 (148)
63 cd08164 MPP_Ted1 Saccharomyces 94.6 0.15 3.2E-06 49.2 8.1 56 316-375 44-112 (193)
64 COG4186 Predicted phosphoester 94.5 0.088 1.9E-06 48.6 6.0 102 285-419 5-115 (186)
65 cd00839 MPP_PAPs purple acid p 94.4 0.11 2.4E-06 52.8 7.3 79 283-375 4-82 (294)
66 PF03100 CcmE: CcmE; InterPro 94.4 0.3 6.6E-06 44.1 9.3 62 178-241 50-120 (131)
67 cd00838 MPP_superfamily metall 94.4 0.078 1.7E-06 45.5 5.3 69 287-372 1-69 (131)
68 KOG3662 Cell division control 93.7 0.39 8.5E-06 51.2 9.8 87 282-377 47-147 (410)
69 cd07378 MPP_ACP5 Homo sapiens 93.2 0.24 5.1E-06 49.9 7.0 82 285-374 2-83 (277)
70 COG1408 Predicted phosphohydro 92.9 0.22 4.7E-06 51.0 6.3 78 284-378 45-122 (284)
71 cd07425 MPP_Shelphs Shewanella 92.8 0.48 1E-05 46.1 8.3 74 287-374 1-80 (208)
72 PRK13150 cytochrome c-type bio 92.7 0.39 8.5E-06 44.7 7.1 62 178-241 57-127 (159)
73 PRK00166 apaH diadenosine tetr 92.6 0.27 5.9E-06 50.1 6.5 66 286-373 3-68 (275)
74 cd00845 MPP_UshA_N_like Escher 92.5 2.4 5.3E-05 41.9 13.2 43 478-520 193-239 (252)
75 COG2332 CcmE Cytochrome c-type 91.9 0.47 1E-05 43.4 6.4 63 176-240 49-120 (153)
76 PRK13165 cytochrome c-type bio 91.9 0.58 1.3E-05 43.6 7.2 62 178-241 57-127 (160)
77 cd07397 MPP_DevT Myxococcus xa 91.9 0.49 1.1E-05 47.2 7.2 187 285-507 2-234 (238)
78 cd00844 MPP_Dbr1_N Dbr1 RNA la 91.7 1.9 4.2E-05 43.6 11.4 118 286-419 1-122 (262)
79 PRK13159 cytochrome c-type bio 91.3 0.73 1.6E-05 42.7 7.2 58 181-241 55-120 (155)
80 cd00144 MPP_PPP_family phospho 90.6 0.74 1.6E-05 44.6 7.0 68 288-375 2-69 (225)
81 PRK11439 pphA serine/threonine 90.2 0.68 1.5E-05 45.3 6.3 28 481-508 181-208 (218)
82 cd07422 MPP_ApaH Escherichia c 90.0 0.77 1.7E-05 46.3 6.7 66 287-374 2-67 (257)
83 PF01336 tRNA_anti-codon: OB-f 89.7 0.67 1.4E-05 36.5 4.8 51 181-231 2-59 (75)
84 PLN02533 probable purple acid 89.1 0.71 1.5E-05 50.0 6.1 73 283-374 139-211 (427)
85 cd07421 MPP_Rhilphs Rhilph pho 88.9 1.5 3.3E-05 45.1 7.8 77 285-374 3-80 (304)
86 cd07413 MPP_PA3087 Pseudomonas 87.8 0.81 1.8E-05 45.0 5.0 69 287-374 2-76 (222)
87 cd07408 MPP_SA0022_N Staphyloc 87.3 10 0.00022 37.9 12.7 50 476-525 198-252 (257)
88 cd00842 MPP_ASMase acid sphing 85.9 2.2 4.7E-05 43.5 7.1 84 290-381 44-129 (296)
89 cd04489 ExoVII_LU_OBF ExoVII_L 84.6 4.8 0.00011 32.1 7.2 60 181-240 3-74 (78)
90 cd07406 MPP_CG11883_N Drosophi 83.8 20 0.00044 35.8 12.9 44 478-521 194-239 (257)
91 TIGR00668 apaH bis(5'-nucleosy 83.1 2.6 5.6E-05 43.0 6.1 66 286-373 3-68 (279)
92 PRK06920 dnaE DNA polymerase I 82.9 13 0.00028 45.1 12.7 73 168-240 933-1020(1107)
93 cd04478 RPA2_DBD_D RPA2_DBD_D: 82.2 7.8 0.00017 32.3 7.8 55 180-234 2-66 (95)
94 PF04076 BOF: Bacterial OB fol 82.0 7.1 0.00015 33.8 7.5 66 166-231 21-89 (103)
95 PRK05629 hypothetical protein; 81.4 3.7 8E-05 42.5 6.7 61 4-71 130-190 (318)
96 PRK07914 hypothetical protein; 79.4 4.6 0.0001 41.8 6.6 61 4-71 132-192 (320)
97 TIGR00156 conserved hypothetic 78.8 7.4 0.00016 35.0 6.7 65 166-230 44-111 (126)
98 PRK08487 DNA polymerase III su 78.7 3.8 8.3E-05 42.6 5.8 61 4-72 139-199 (328)
99 cd04483 hOBFC1_like hOBFC1_lik 78.3 11 0.00025 31.7 7.5 50 182-231 2-77 (92)
100 COG3111 Periplasmic protein wi 78.1 6 0.00013 35.2 5.8 66 165-230 43-111 (128)
101 PRK05907 hypothetical protein; 77.4 6.5 0.00014 40.8 6.9 64 3-72 137-202 (311)
102 smart00156 PP2Ac Protein phosp 76.8 11 0.00024 38.3 8.2 73 283-374 27-99 (271)
103 PRK07373 DNA polymerase III su 76.7 7.8 0.00017 42.3 7.6 62 179-240 282-357 (449)
104 PRK07452 DNA polymerase III su 76.6 5.9 0.00013 40.9 6.5 61 4-71 134-197 (326)
105 PRK05673 dnaE DNA polymerase I 76.5 28 0.00061 42.5 12.8 124 168-325 966-1105(1135)
106 cd07416 MPP_PP2B PP2B, metallo 76.3 11 0.00024 39.0 8.2 73 283-374 42-114 (305)
107 PRK13625 bis(5'-nucleosyl)-tet 76.1 9.6 0.00021 37.9 7.6 41 479-520 184-224 (245)
108 cd07411 MPP_SoxB_N Thermus the 75.9 54 0.0012 32.8 13.0 47 478-524 206-255 (264)
109 cd04485 DnaE_OBF DnaE_OBF: A s 73.9 13 0.00029 29.2 6.6 47 194-240 23-74 (84)
110 PRK10053 hypothetical protein; 73.8 6.8 0.00015 35.4 5.2 65 166-230 48-115 (130)
111 KOG0373 Serine/threonine speci 73.8 17 0.00037 35.7 8.1 72 284-374 46-117 (306)
112 cd07420 MPP_RdgC Drosophila me 73.6 13 0.00029 38.7 8.1 72 285-374 52-123 (321)
113 cd07415 MPP_PP2A_PP4_PP6 PP2A, 73.4 12 0.00026 38.4 7.6 73 283-374 41-113 (285)
114 cd07419 MPP_Bsu1_C Arabidopsis 73.0 13 0.00029 38.4 7.9 74 284-374 48-127 (311)
115 PRK06585 holA DNA polymerase I 72.5 12 0.00026 39.0 7.5 62 4-72 146-209 (343)
116 cd07414 MPP_PP1_PPKL PP1, PPKL 72.0 14 0.0003 38.1 7.7 73 283-374 49-121 (293)
117 KOG3325 Membrane coat complex 71.2 7.9 0.00017 35.7 4.9 28 481-508 109-136 (183)
118 PRK09087 hypothetical protein; 69.7 13 0.00027 36.7 6.6 67 3-73 155-222 (226)
119 PRK05574 holA DNA polymerase I 66.1 21 0.00047 36.7 7.8 61 4-72 150-212 (340)
120 PTZ00480 serine/threonine-prot 65.9 20 0.00044 37.4 7.4 73 283-374 58-130 (320)
121 PF06581 p31comet: Mad1 and Cd 65.5 17 0.00037 36.4 6.3 81 300-384 125-222 (264)
122 PTZ00239 serine/threonine prot 63.9 24 0.00053 36.5 7.5 72 284-374 43-114 (303)
123 cd04488 RecG_wedge_OBF RecG_we 63.2 18 0.00039 27.8 5.2 50 194-245 22-72 (75)
124 PRK06893 DNA replication initi 63.1 21 0.00044 35.1 6.6 67 1-71 161-228 (229)
125 PRK06461 single-stranded DNA-b 63.1 46 0.00099 29.8 8.3 62 166-229 3-77 (129)
126 COG1466 HolA DNA polymerase II 62.5 25 0.00055 36.6 7.5 63 4-72 144-206 (334)
127 PRK06620 hypothetical protein; 62.0 20 0.00044 34.9 6.3 64 3-70 149-213 (214)
128 cd07418 MPP_PP7 PP7, metalloph 61.3 29 0.00063 37.0 7.7 72 284-374 66-138 (377)
129 KOG1432 Predicted DNA repair e 61.1 21 0.00046 37.4 6.4 80 282-374 52-147 (379)
130 PRK09419 bifunctional 2',3'-cy 60.8 63 0.0014 39.7 11.5 31 478-508 869-899 (1163)
131 cd04479 RPA3 RPA3: A subfamily 60.1 83 0.0018 26.9 9.0 58 178-239 15-74 (101)
132 cd04492 YhaM_OBF_like YhaM_OBF 60.0 15 0.00033 29.1 4.3 47 194-240 23-73 (83)
133 PRK08084 DNA replication initi 59.0 29 0.00063 34.2 6.9 66 2-71 168-234 (235)
134 TIGR01128 holA DNA polymerase 57.6 38 0.00082 34.2 7.7 63 4-72 115-177 (302)
135 cd07417 MPP_PP5_C PP5, C-termi 55.4 37 0.00081 35.3 7.2 72 284-373 60-131 (316)
136 PRK14086 dnaA chromosomal repl 55.3 33 0.00071 39.0 7.2 69 2-74 447-516 (617)
137 PF15072 DUF4539: Domain of un 54.5 32 0.0007 28.8 5.3 48 181-228 6-59 (86)
138 PRK05642 DNA replication initi 53.4 36 0.00077 33.6 6.5 65 2-71 167-233 (234)
139 PRK07374 dnaE DNA polymerase I 51.6 40 0.00086 41.3 7.6 73 168-240 989-1077(1170)
140 cd04456 S1_IF1A_like S1_IF1A_l 51.2 63 0.0014 26.5 6.4 45 182-226 2-48 (78)
141 cd03524 RPA2_OBF_family RPA2_O 49.6 49 0.0011 24.7 5.5 50 182-231 2-61 (75)
142 PRK12402 replication factor C 48.8 42 0.00091 34.4 6.5 60 4-71 188-247 (337)
143 cd05793 S1_IF1A S1_IF1A: Trans 48.7 71 0.0015 26.1 6.4 46 182-227 2-49 (77)
144 PRK07217 replication factor A; 47.7 1.2E+02 0.0025 31.6 9.1 71 166-237 71-150 (311)
145 PRK08402 replication factor A; 46.9 67 0.0014 34.1 7.6 66 166-231 61-142 (355)
146 PRK06826 dnaE DNA polymerase I 46.1 55 0.0012 40.1 7.6 109 180-325 994-1117(1151)
147 KOG3770 Acid sphingomyelinase 45.7 67 0.0015 36.0 7.5 79 303-387 197-276 (577)
148 KOG3350 Uncharacterized conser 45.5 15 0.00033 34.9 2.3 59 17-75 9-69 (217)
149 PRK05672 dnaE2 error-prone DNA 45.0 47 0.001 40.3 6.8 61 180-240 956-1028(1046)
150 PRK00440 rfc replication facto 44.3 52 0.0011 33.3 6.3 60 4-71 165-224 (319)
151 PTZ00244 serine/threonine-prot 44.0 62 0.0013 33.4 6.7 72 284-374 52-123 (294)
152 smart00652 eIF1a eukaryotic tr 43.4 96 0.0021 25.7 6.5 47 182-228 7-55 (83)
153 PF13742 tRNA_anti_2: OB-fold 43.0 1.1E+02 0.0024 25.9 7.1 71 170-240 11-97 (99)
154 cd04491 SoSSB_OBF SoSSB_OBF: A 43.0 77 0.0017 25.5 5.9 35 194-229 27-62 (82)
155 PRK12422 chromosomal replicati 41.3 63 0.0014 35.3 6.6 70 3-73 273-343 (445)
156 PTZ00422 glideosome-associated 40.6 95 0.0021 33.4 7.6 82 284-373 27-108 (394)
157 cd04482 RPA2_OBF_like RPA2_OBF 40.3 2.2E+02 0.0047 23.8 8.4 61 181-241 2-72 (91)
158 TIGR00362 DnaA chromosomal rep 39.1 78 0.0017 33.8 6.8 67 3-73 270-337 (405)
159 PRK05159 aspC aspartyl-tRNA sy 37.8 1.3E+02 0.0028 32.7 8.4 63 169-231 6-79 (437)
160 COG0593 DnaA ATPase involved i 37.6 98 0.0021 33.5 7.1 69 3-75 246-315 (408)
161 PRK08727 hypothetical protein; 37.6 93 0.002 30.6 6.6 65 3-71 164-229 (233)
162 PF01176 eIF-1a: Translation i 37.3 1E+02 0.0023 24.0 5.6 46 182-227 5-52 (65)
163 PRK04012 translation initiatio 36.9 1.3E+02 0.0028 25.9 6.5 46 181-226 22-69 (100)
164 cd04320 AspRS_cyto_N AspRS_cyt 36.0 1.4E+02 0.003 25.2 6.6 51 180-230 2-65 (102)
165 cd04316 ND_PkAspRS_like_N ND_P 35.9 1.4E+02 0.0031 25.5 6.7 54 178-231 12-76 (108)
166 cd04319 PhAsnRS_like_N PhAsnRS 33.9 1.3E+02 0.0029 25.4 6.2 51 180-230 2-61 (103)
167 cd04321 ScAspRS_mt_like_N ScAs 33.9 2.3E+02 0.005 23.1 7.4 51 180-230 2-61 (86)
168 PRK14970 DNA polymerase III su 33.7 1.4E+02 0.003 31.3 7.6 61 4-71 171-231 (367)
169 PRK00149 dnaA chromosomal repl 33.7 1.1E+02 0.0024 33.2 7.1 67 3-73 282-349 (450)
170 PRK07279 dnaE DNA polymerase I 32.8 89 0.0019 37.8 6.5 71 168-240 876-962 (1034)
171 TIGR02397 dnaX_nterm DNA polym 32.7 1.1E+02 0.0023 31.7 6.5 60 4-70 180-239 (355)
172 cd04100 Asp_Lys_Asn_RS_N Asp_L 32.6 1.7E+02 0.0037 23.6 6.4 51 180-230 2-61 (85)
173 PRK14088 dnaA chromosomal repl 32.5 1.1E+02 0.0024 33.3 6.7 67 3-73 265-332 (440)
174 cd04323 AsnRS_cyto_like_N AsnR 32.3 1.8E+02 0.004 23.4 6.6 51 180-230 2-60 (84)
175 PLN02502 lysyl-tRNA synthetase 32.2 2.8E+02 0.006 31.4 9.8 52 180-231 111-175 (553)
176 cd04322 LysRS_N LysRS_N: N-ter 32.1 1.8E+02 0.0039 24.8 6.8 51 180-230 2-63 (108)
177 PRK06386 replication factor A; 31.9 2.6E+02 0.0057 29.7 9.1 59 166-231 106-178 (358)
178 PRK14963 DNA polymerase III su 31.5 1.1E+02 0.0024 34.0 6.5 59 4-70 179-237 (504)
179 cd04317 EcAspRS_like_N EcAspRS 31.2 1.3E+02 0.0028 26.8 6.0 52 179-230 16-75 (135)
180 KOG3416 Predicted nucleic acid 30.7 1.1E+02 0.0024 27.5 5.1 47 182-230 25-75 (134)
181 TIGR00499 lysS_bact lysyl-tRNA 29.6 1.2E+02 0.0026 33.7 6.4 52 180-231 56-118 (496)
182 PRK10917 ATP-dependent DNA hel 29.5 1.6E+02 0.0034 34.1 7.6 64 166-231 49-122 (681)
183 KOG1378 Purple acid phosphatas 29.2 89 0.0019 34.1 5.1 183 283-489 147-379 (452)
184 PLN00208 translation initiatio 29.1 1.9E+02 0.0041 26.7 6.5 47 181-227 33-81 (145)
185 PRK13480 3'-5' exoribonuclease 28.4 2.3E+02 0.0051 29.5 8.0 74 169-244 4-91 (314)
186 PRK14087 dnaA chromosomal repl 28.3 1.4E+02 0.003 32.7 6.6 69 3-73 277-348 (450)
187 PRK14955 DNA polymerase III su 28.2 1.3E+02 0.0028 32.2 6.3 63 4-70 190-254 (397)
188 PRK01889 GTPase RsgA; Reviewed 28.2 3.7E+02 0.0081 28.3 9.7 46 182-227 29-79 (356)
189 COG1190 LysU Lysyl-tRNA synthe 27.9 1.7E+02 0.0036 32.4 6.9 61 180-240 64-139 (502)
190 PF05582 Peptidase_U57: YabG p 27.8 2.5E+02 0.0054 28.8 7.7 89 301-414 144-236 (287)
191 KOG0371 Serine/threonine prote 27.6 2E+02 0.0044 29.2 6.9 71 284-373 60-130 (319)
192 smart00576 BTP Bromodomain tra 27.5 2.6E+02 0.0056 22.5 6.5 63 4-73 7-71 (77)
193 TIGR00523 eIF-1A eukaryotic/ar 26.3 2.3E+02 0.005 24.3 6.2 45 181-225 20-66 (99)
194 cd07410 MPP_CpdB_N Escherichia 26.0 83 0.0018 31.6 4.1 48 478-525 217-267 (277)
195 PRK03932 asnC asparaginyl-tRNA 25.0 2.5E+02 0.0055 30.7 7.9 61 180-240 19-94 (450)
196 TIGR02855 spore_yabG sporulati 25.0 2.8E+02 0.0061 28.3 7.5 107 301-432 143-263 (283)
197 PLN03025 replication factor C 24.3 1.8E+02 0.0038 30.0 6.3 28 4-31 162-189 (319)
198 PRK07135 dnaE DNA polymerase I 24.3 1.2E+02 0.0027 36.5 5.6 70 168-239 889-968 (973)
199 COG0361 InfA Translation initi 24.3 2.9E+02 0.0062 22.6 6.0 48 181-228 8-58 (75)
200 PF07524 Bromo_TP: Bromodomain 24.2 3.7E+02 0.008 21.4 7.1 31 4-34 7-38 (77)
201 PF13309 HTH_22: HTH domain 24.0 1.2E+02 0.0025 23.8 3.7 34 1-34 21-54 (64)
202 cd07380 MPP_CWF19_N Schizosacc 23.5 2.7E+02 0.0058 25.7 6.6 67 288-372 2-68 (150)
203 PF09415 CENP-X: CENP-S associ 22.8 46 0.001 26.9 1.2 57 12-73 12-68 (72)
204 cd04474 RPA1_DBD_A RPA1_DBD_A: 22.6 2.4E+02 0.0052 24.0 5.8 49 180-228 12-76 (104)
205 PTZ00329 eukaryotic translatio 22.4 2.9E+02 0.0063 25.8 6.5 47 181-227 33-81 (155)
206 PRK14962 DNA polymerase III su 22.3 1.9E+02 0.0042 31.8 6.3 61 4-71 180-240 (472)
207 PRK15491 replication factor A; 22.3 2E+02 0.0044 30.7 6.3 64 166-229 56-136 (374)
208 cd01854 YjeQ_engC YjeQ/EngC. 22.1 7.7E+02 0.017 24.9 10.4 55 184-240 1-56 (287)
209 PF10451 Stn1: Telomere regula 22.0 2.7E+02 0.0059 28.1 6.8 63 181-244 70-148 (256)
210 PRK06305 DNA polymerase III su 21.5 2.9E+02 0.0064 30.2 7.6 60 4-70 184-243 (451)
211 PRK14964 DNA polymerase III su 21.4 2E+02 0.0044 31.9 6.2 60 4-70 179-238 (491)
212 TIGR00457 asnS asparaginyl-tRN 21.2 1.7E+02 0.0036 32.1 5.5 53 178-230 16-80 (453)
213 cd07410 MPP_CpdB_N Escherichia 21.2 1.7E+02 0.0036 29.4 5.3 28 300-329 29-57 (277)
214 TIGR03015 pepcterm_ATPase puta 21.0 3.9E+02 0.0084 26.2 7.9 67 4-74 196-267 (269)
215 PRK12445 lysyl-tRNA synthetase 20.7 2.5E+02 0.0055 31.2 6.9 61 180-240 68-143 (505)
216 PRK14954 DNA polymerase III su 20.6 2.1E+02 0.0045 32.8 6.3 30 4-33 190-219 (620)
217 KOG0372 Serine/threonine speci 20.3 3.8E+02 0.0082 27.1 7.2 72 283-373 42-113 (303)
218 TIGR03420 DnaA_homol_Hda DnaA 20.2 2.4E+02 0.0053 26.8 6.0 61 6-70 164-225 (226)
No 1
>KOG3818 consensus DNA polymerase epsilon, subunit B [Replication, recombination and repair]
Probab=100.00 E-value=9e-128 Score=973.86 Aligned_cols=510 Identities=32% Similarity=0.589 Sum_probs=474.5
Q ss_pred hHHHHHHHHHHHhcCCccCHHHHHHHHHhhccCCCCh-HHHHHHHHHHHhcccCCCcceeeHHHHHHHHHHHHHhhhccc
Q 009713 3 GQTRKKIQKKMKIRGYGLRMDALDEILSFVNRFPDAE-DEAIDLLLDQFEHESSLKSSIIDKESVNRVTSVLLQAEAAAE 81 (528)
Q Consensus 3 ~~~r~~i~~~fk~~gl~l~~~al~~l~~~~~~~~~~~-~~~~~~~~~~i~k~~~~~~~~vd~~~l~~~~~~~~~~~~~~~ 81 (528)
+.+|+.+-.+||+.|.+++++|.++|+++.......+ .+|++.+++.|++|. +.+..+..+.+++++++|+.
T Consensus 6 ~~L~~~as~~fk~~G~l~R~~~ik~L~e~~~~~~~~er~~~i~~i~e~iq~q~-l~s~~~~r~~~~~avq~~~~------ 78 (525)
T KOG3818|consen 6 DRLRELASFVFKLCGHLWRSEAIKLLVELALDWKKEERKKWINKIIELIQKQK-LNSPHEEREAIEAAVQECSS------ 78 (525)
T ss_pred HHHHHHHHHHHhhhhHHHHHhHHHHHHHHHhhhHHHHhhhhHHHHHHHHHhhc-cCCchhhHHHHHHHHHHhhh------
Confidence 4899999999999999999999999999987766554 489999999999996 99999999999999999976
Q ss_pred CCCCCCCCCCceEEeCCCCCCCeeeecccceeec-cCCCCCccCChhHHHHHHHHHHHHHHHHHhccCCCCCCcccc-cc
Q 009713 82 GDSGSASNHSAIRVIDAFLVPKFRYDSIKKHFYQ-HAGSLPIHGEASAKAALYRDRFLLLFQRVSRDQHFSRPSFDV-VN 159 (528)
Q Consensus 82 ~~~~~~~~~~~~~vi~af~~P~~~y~~~~k~f~~-~~~~~~l~~~~~~k~~~f~~Ry~~l~~rl~R~~~F~~~~~~~-~~ 159 (528)
++..+++++|+|||||++|||.||+++|+|+. ...+++|++++.+|++|||+||.+++||++||++|++|...+ ..
T Consensus 79 --sg~~~~e~~F~vidAf~~prF~Yn~~~kkFvl~~k~~~~l~~~~~~ks~m~~~Ry~i~~qR~mR~e~Fq~pv~~s~~~ 156 (525)
T KOG3818|consen 79 --SGTQDAEKYFNVIDAFSLPRFDYNSDRKKFVLPNKPKPSLLADPSDKSDMFRQRYFIVKQRTMRNELFQPPVSGSGRC 156 (525)
T ss_pred --cccccHHHHHhhcchhcCCccccCchheEEEecCCCCccccCChHHHHHHHHHHHHHHHHHHHhhhccCCCccCCchh
Confidence 35578899999999999999999999999976 455569999999999999999999999999999999984433 33
Q ss_pred CCCCccceeeccccc-CCCCcE-EEEEEEEEcCCCcEEEEeCCcEEEEEeccccccceeeccCeEEEEEEEEeeCCeEEE
Q 009713 160 SEFGSCEISTIQSLV-GQTGRR-WVMGVISQLEDGHFYLEDLAASVEIDLSKAKITTGFFTENTIVVAEGEMLVDGIFQV 237 (528)
Q Consensus 160 ~~~~~~~it~I~~Ll-g~~g~~-~vlGml~~~~~g~~~LED~sg~V~Ldls~~~~~~g~f~~G~vV~veG~~~~~g~F~V 237 (528)
.+.+++++|||++|+ |+.++. .|+|||+|..+|+|+|||++|+|+||+++++++.|+|||||+|+|||.|. +|+|+|
T Consensus 157 ~q~~~fklt~ienLL~t~~~~~~lvLGlLTq~k~G~~~lEDpsgsVqlDlsqa~fh~glf~egC~VL~EG~f~-~~vf~V 235 (525)
T KOG3818|consen 157 AQLKKFKLTPIENLLSTRALQSFLVLGLLTQLKEGKFHLEDPSGSVQLDLSQAKFHHGLFCEGCFVLVEGTFE-SGVFHV 235 (525)
T ss_pred hhccccceeEHHHhhccccccceeeeehhhhccCCcEEEeCCCCcEEEeecccccccceeccceEEEEeeeee-cceEEE
Confidence 455679999999999 677766 79999999999999999999999999999999999999999999999995 699999
Q ss_pred EEecCCCCCCchhhhhhhcCcccCCCCCC-chhhhHHHHHHHHhccCCeEEEEeCCccCcHhHHHHHHHHHhcccCCCCC
Q 009713 238 ITCGFPPLEDRDQSLKLLAGYDFFGGGTL-KKEDTLRLADLEKRAANDMFVILSDIWLDNEEVMGKLEVVLDGFESVEVV 316 (528)
Q Consensus 238 ~~i~~Pp~e~r~~s~~~~~~~d~fG~~~~-~~~~~~~l~~~e~~~~~~~~v~lSdv~ld~~~~le~L~~ll~~~~~~~~~ 316 (528)
+++|+||.|+|+.|++.+||+|+||+++. +.+...+|+.+|++++|.++||+||||||+.++|++|+++|+||+++ +
T Consensus 236 ~~lg~PP~E~~~~tr~~~gN~n~~Gg~~~~~~k~sA~L~~lE~~~~d~~fVfLSdV~LD~~~vm~aL~kifqgy~~~--p 313 (525)
T KOG3818|consen 236 NELGFPPVERREVTRKELGNLNWLGGDSKIAFKCSARLRSLEAENTDTSFVFLSDVFLDDKKVMEALRKIFQGYKDA--P 313 (525)
T ss_pred eeccCCCCCcchhHHHHhccCcccCCcchhhhHHHHHHHHHHHhCcCceEEEEehhccccHHHHHHHHHHHhhccCC--C
Confidence 99999999999999999999999999864 56788999999999999999999999999999999999999999986 9
Q ss_pred CeEEEEEccCCCCCCCCCCcchhHHHHHHHHHHHHHHcCCCCCCceeEEEecCCCCCCCCCCCCCCCCchhhHHHHhhhC
Q 009713 317 PSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHSRFLFIPGPDDAGPSTVLPRCALPKYLTEELQKYI 396 (528)
Q Consensus 317 P~~~Vl~G~F~s~~~~~~~~~~~~~~~~f~~la~~l~~~p~l~~~~~~v~VPG~~Dp~~~~~lPqpplp~~~~~~l~~~~ 396 (528)
|.+||+||+|+|.|.+. ++...|+++|+.||..|+.++...++|+|||||||+|||.+++|||||||+.|++++.+.+
T Consensus 314 P~~iIlcG~FtS~p~~~--~s~~~~k~~f~~LA~~l~~~~~~~ekT~fIFVPGP~Dp~~~~iLPr~piP~~~~~~i~kv~ 391 (525)
T KOG3818|consen 314 PTAIILCGSFTSSPRQT--SSSDQLKDGFRWLAAQLTCFRKDYEKTQFIFVPGPNDPWVDNILPRPPIPSLFTKHISKVC 391 (525)
T ss_pred CeEEEEecccccccccc--chHHHHHHHHHHHHhhccccccccccceEEEecCCCCCCcCccCCCCCchHHHHHHHHhhc
Confidence 99999999999999764 4678999999999999999998889999999999999999999999999999999999999
Q ss_pred CceEEecCCeEEEEccEEEEEEehHHHHHHhhcccCCCCCCCCCChHHHHHHHHhcCCCCCCCCCCCccccCCCCCcccc
Q 009713 397 PNAIFSSNPCRIKFYTQEIVFFRQDLLYRMRRSCLIPPSREETDDPFEHLVATITHQSHLCPLPLTVQPIIWNYDHSLHL 476 (528)
Q Consensus 397 ~n~~~~sNPcri~~~~~eIvi~rdDl~~~l~r~~i~~p~~~~~~d~~~~l~ktiL~Q~hL~Pl~~~~~pi~w~~d~~L~L 476 (528)
||++|+||||||.||+|||||||+|+++|+|||++.+|.+. ....+|+|||||+||||+|+++.++||+|||||+|+|
T Consensus 392 ~~tvfasNPcRIqy~sQEIvVfR~DL~~kfcRn~l~Fp~~~--~qipq~~vkTIL~QgHLsP~p~~~~PV~WD~D~aLsl 469 (525)
T KOG3818|consen 392 KNTVFASNPCRIQYCSQEIVVFRDDLSGKFCRNSLNFPITV--EQIPQHLVKTILDQGHLSPFPQHIRPVLWDFDHALSL 469 (525)
T ss_pred CCceeccCCeeeEeecceEEEEhHhhhhHHhhccccCCCcH--HHHHHHHHHHHhhccccCCCccccCccccCcccceEe
Confidence 99999999999999999999999999999999999998644 3678999999999999999999999999999999999
Q ss_pred cCCCcEEEecCCCCcc-eEEeCCeEEEcCCCC-CCCcEEEEEECCCCeEEeccC
Q 009713 477 YPTPHAIVLADKSEQK-AFKYTGITCFNPGSF-SSDSTFVAYRPCTQEVEFSAL 528 (528)
Q Consensus 477 ~p~Pdvlil~d~~~~f-~~~y~gc~~vNpGsf-~~~~sf~~y~p~~~~~e~~~~ 528 (528)
||+||+||++|++.+| .++|+||.|+|||+| .++++|.+|+|+++++|.|++
T Consensus 470 ~PlPdlmvl~Ds~~sf~~vt~~gC~v~NPGSF~~s~~~f~vy~P~~k~ve~sei 523 (525)
T KOG3818|consen 470 YPLPDLMVLADSFSSFFDVTYAGCIVINPGSFSRSNYTFKVYYPSQKTVEDSEI 523 (525)
T ss_pred ccCcceEEeecccccccccccCCceeeCCCcccccceeEEEEecccceeecccc
Confidence 9999999999999765 479999999999999 688999999999999999985
No 2
>PTZ00235 DNA polymerase epsilon subunit B; Provisional
Probab=100.00 E-value=1.3e-66 Score=516.20 Aligned_cols=242 Identities=29% Similarity=0.519 Sum_probs=214.9
Q ss_pred cCCeEEEEeCCccCcHhHHHHHHHHHhcccCC---CCCCeEEEEEccCCCCCCCCCCcchhHHHHHHHHHHH-HHHcCCC
Q 009713 282 ANDMFVILSDIWLDNEEVMGKLEVVLDGFESV---EVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQ-MIAAHPR 357 (528)
Q Consensus 282 ~~~~~v~lSdv~ld~~~~le~L~~ll~~~~~~---~~~P~~~Vl~G~F~s~~~~~~~~~~~~~~~~f~~la~-~l~~~p~ 357 (528)
..++|||+||||||++++|++|+++|++|++. +..|.+|||||||+|.|...+.+....|+++|++||. +|++||.
T Consensus 26 ~~~~~VilSDV~LD~p~tl~~L~kvf~~y~~~~~~~~~P~~fVL~GnF~S~p~~~~~~~~~~yk~~Fd~La~llls~fp~ 105 (291)
T PTZ00235 26 KRHNWIIMHDVYLDSPYTFEVLDKMLSLYVNTYPENELPVGFIFMGDFISLKFDYNRNFHKVYIKGFEKLSVMLISKFKL 105 (291)
T ss_pred CceEEEEEEeeccCCHHHHHHHHHHHHHhhccCcccCCCeEEEEecCccCCcccCCCCchHHHHHHHHHHHHHHHHhChH
Confidence 45799999999999999999999999999642 3469999999999999866544445679999999998 5899999
Q ss_pred CCCceeEEEecCCCCCCC-CCCCCCCCCchhhHHHHhhhC-------CceEEecCCeEEEEccEEEEEEehHHHHHHhhc
Q 009713 358 LKEHSRFLFIPGPDDAGP-STVLPRCALPKYLTEELQKYI-------PNAIFSSNPCRIKFYTQEIVFFRQDLLYRMRRS 429 (528)
Q Consensus 358 l~~~~~~v~VPG~~Dp~~-~~~lPqpplp~~~~~~l~~~~-------~n~~~~sNPcri~~~~~eIvi~rdDl~~~l~r~ 429 (528)
|.++|+||||||++|||. +.+|||||||+.|++++++.. |+++|+||||||+|+||||||||||++++|+|+
T Consensus 106 L~~~s~fVFVPGpnDPw~s~~~LPR~PIp~~f~~~~~~~~e~~~~~~~~~i~aSNPcRI~y~sqEIVifRdDl~~~L~r~ 185 (291)
T PTZ00235 106 ILEHCYLIFIPGINDPCACKNSIPKMPILPYYIRKFKQNIESFFSSKRNIIFATNPCRIRHLSKKMIFFRHDILNDLIWS 185 (291)
T ss_pred HHhcCeEEEECCCCCCCcCcccCCCCCchHHHHHHHHHhhhhccCCCCceEEecCCcEEEecCceEEEEeHHHHHHHhhh
Confidence 999999999999999975 579999999999999998664 799999999999999999999999999999999
Q ss_pred ccCCCCCCCCCChHHHHHHHHhcCCCCCCCCCCCccccCCCCCcccccCCCcEEEecCCC-Cc---ceE-EeCCeEEEcC
Q 009713 430 CLIPPSREETDDPFEHLVATITHQSHLCPLPLTVQPIIWNYDHSLHLYPTPHAIVLADKS-EQ---KAF-KYTGITCFNP 504 (528)
Q Consensus 430 ~i~~p~~~~~~d~~~~l~ktiL~Q~hL~Pl~~~~~pi~w~~d~~L~L~p~Pdvlil~d~~-~~---f~~-~y~gc~~vNp 504 (528)
++.....++..|..++|++|||+||||||++ ...||+|+|||+|+|||+||+|||||++ ++ |.. ++++|+|+||
T Consensus 186 ~~i~~~~~~~~d~~~~lvkTIldQ~HL~Pl~-~~~pI~W~yD~aL~LyPlPd~ivL~D~s~~~~~~~~~~~~~~~~~~Np 264 (291)
T PTZ00235 186 STINATNNERNNLQNILVSTIVGQSHIYPIP-HDNRILKRYSPFLFLYPLPHFICVCDNSCNSFISYASEDTSDCIISNS 264 (291)
T ss_pred ccCCCCCccchhHHHHHHHhhhcccccCCCc-cCCccccccccceeccCCCCEEEEecCCCCccceeecccCCceEEECC
Confidence 9543333344578899999999999999998 6688999999999999999999999995 66 444 7889999999
Q ss_pred -CCCCCCcEEEEEECCCCeEE
Q 009713 505 -GSFSSDSTFVAYRPCTQEVE 524 (528)
Q Consensus 505 -Gsf~~~~sf~~y~p~~~~~e 524 (528)
|+|.++++|.+|+|+|+++.
T Consensus 265 ~gsF~~~~sF~~Y~~~~~~~~ 285 (291)
T PTZ00235 265 DMSFTRKKTFTVYSALHHEAK 285 (291)
T ss_pred CCccCCCceEEEEehhcceeh
Confidence 59998899999999999875
No 3
>PRK04036 DNA polymerase II small subunit; Validated
Probab=100.00 E-value=7.9e-54 Score=465.00 Aligned_cols=450 Identities=17% Similarity=0.247 Sum_probs=322.4
Q ss_pred HHHHHHHHhcCCccCHHHHHHHHHhhccCCCChHHHHHHHHHHHhcccCCCc---ceeeHHHHHHHHHHHHHhhhcccCC
Q 009713 7 KKIQKKMKIRGYGLRMDALDEILSFVNRFPDAEDEAIDLLLDQFEHESSLKS---SIIDKESVNRVTSVLLQAEAAAEGD 83 (528)
Q Consensus 7 ~~i~~~fk~~gl~l~~~al~~l~~~~~~~~~~~~~~~~~~~~~i~k~~~~~~---~~vd~~~l~~~~~~~~~~~~~~~~~ 83 (528)
+.|++.|..+|++++++|+++|.+.-+ ..+..+++.+.+.. ..+ .+|+.+.++..+..........+.
T Consensus 2 ~~~~~~~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 72 (504)
T PRK04036 2 AEIVRKFLERGYLLSPEAYELLKELDE-------DDLSELIEKIKEGK-PDKADVIVIDSEDLEEFLSSADLEEEREEE- 72 (504)
T ss_pred hHHHHHHHHcCCCcCHHHHHHHHhccc-------cCHHHHHHHHHhcC-CccccEEEechHHhHHHhhccccccccccc-
Confidence 579999999999999999999987532 22444555554432 222 277888888877322111000000
Q ss_pred CCCCCCCCceEEeCCCCCCCeee----eccccee---eccCCCCCccCChhHHHHHHHHHHHHHHHHHhccCCCCCCccc
Q 009713 84 SGSASNHSAIRVIDAFLVPKFRY----DSIKKHF---YQHAGSLPIHGEASAKAALYRDRFLLLFQRVSRDQHFSRPSFD 156 (528)
Q Consensus 84 ~~~~~~~~~~~vi~af~~P~~~y----~~~~k~f---~~~~~~~~l~~~~~~k~~~f~~Ry~~l~~rl~R~~~F~~~~~~ 156 (528)
.........-..++..+ ......+ ...++++++.|++.++++||++||..|++++.++.
T Consensus 73 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~y~~R~~~L~~~l~~~~-------- 138 (504)
T PRK04036 73 ------EEESESIRESVNPKINTIAKDIEVDIEVEVLSDVTGKSTCTGEVEDFVAYFRDRYEKLSKIIRGRV-------- 138 (504)
T ss_pred ------ccccccccccccccccccccccccCCCcEEeecCCCcccCCCCHHHHHHHHHHHHHHHHHHHHhhc--------
Confidence 00000000001111111 0011111 12467788999999999999999999999887643
Q ss_pred cccCCCCccceeecccccCCC---CcEEEEEEEEEcC---CCc--EEEEeCCcEEEEEecccc--c-c-ceeeccCeEEE
Q 009713 157 VVNSEFGSCEISTIQSLVGQT---GRRWVMGVISQLE---DGH--FYLEDLAASVEIDLSKAK--I-T-TGFFTENTIVV 224 (528)
Q Consensus 157 ~~~~~~~~~~it~I~~Llg~~---g~~~vlGml~~~~---~g~--~~LED~sg~V~Ldls~~~--~-~-~g~f~~G~vV~ 224 (528)
+.++|++|++.. ++.+|+|||++.. +|+ ++|||++|+|+|.++++. . . .+.+++|+||+
T Consensus 139 ---------~~~~i~~l~~~~~~~~~~~viG~v~~~~~~~~g~~~~~LED~sgrv~l~~~~~~~~~~~~~~~lvtg~vv~ 209 (504)
T PRK04036 139 ---------NHRPIESLKKLKRGGEEVSIIGMVSDIRSTKNGHKIVELEDTTGTFPVLIMKDREDLAELADELLLDEVIG 209 (504)
T ss_pred ---------ccccHHHHhcCccCCceEEEEEEEEEeecccCCceEEEEECCCCeEEEEeecchhhhhhhhhcccCceEEE
Confidence 445778877654 3458999999876 676 899999999999987653 1 1 13457999999
Q ss_pred EEEEEeeCC-eEEEEEecCCCCCCchhhhhhhcCcccCCCCCCchhhhHHHHHHHHhccCCeEEEEeCCccCcHhHHHH-
Q 009713 225 AEGEMLVDG-IFQVITCGFPPLEDRDQSLKLLAGYDFFGGGTLKKEDTLRLADLEKRAANDMFVILSDIWLDNEEVMGK- 302 (528)
Q Consensus 225 veG~~~~~g-~F~V~~i~~Pp~e~r~~s~~~~~~~d~fG~~~~~~~~~~~l~~~e~~~~~~~~v~lSdv~ld~~~~le~- 302 (528)
|+|.+..+| .|+|.+|++|+.+++... ++...+.+++++||+|+++..+++.
T Consensus 210 v~G~~~~~g~~f~v~~i~~p~~p~~~~~--------------------------~~~~~~~~i~~ISDlHlgs~~~~~~~ 263 (504)
T PRK04036 210 VEGTLSGDGGLIFADEIIRPDVPRTKEP--------------------------PTKDEKVYAVFISDVHVGSKEFLEDA 263 (504)
T ss_pred EEEEEcCCCCEEEEEEEECCCCCccCCC--------------------------CcCCCccEEEEEcccCCCCcchhHHH
Confidence 999998778 899999999998765210 1123567899999999999866543
Q ss_pred HHHHHhcccCC-------CCCCeEEEEEccCCCCCCCCCCc----chhHHHHHHHHHHHHHHcCCCCCCceeEEEecCCC
Q 009713 303 LEVVLDGFESV-------EVVPSLFVFMGNFCSHPCNLSFH----SFSSLRLQFGKLGQMIAAHPRLKEHSRFLFIPGPD 371 (528)
Q Consensus 303 L~~ll~~~~~~-------~~~P~~~Vl~G~F~s~~~~~~~~----~~~~~~~~f~~la~~l~~~p~l~~~~~~v~VPG~~ 371 (528)
+..|+++.... ...|.++|++||++++...+.+. ...++.++++.++++|.+. .+++++++|||||
T Consensus 264 l~~li~~L~g~~~~~~~~~~~~d~lVIaGDivd~~~~~p~~~~~~~~~~~~~~~~~l~~~L~~L---~~~i~V~~ipGNH 340 (504)
T PRK04036 264 FEKFIDWLNGEVGNEEEIASRVKYLIIAGDLVDGIGIYPGQEEELEIVDIYEQYEAAAEYLKQI---PEDIKIIISPGNH 340 (504)
T ss_pred HHHHHHHHhCCCccchhhhhcCCEEEEeCcccccccCCccchhhccchhhHHHHHHHHHHHHhh---hcCCeEEEecCCC
Confidence 44444433311 24799999999999863222111 1233455677888888754 4678999999999
Q ss_pred CCCCCCCCCCCCCchhhHHHHhhhCCceEEecCCeEEEEccEEEEEEehHHHHHHhhcccCCCCCCCCCChHHHHHHHHh
Q 009713 372 DAGPSTVLPRCALPKYLTEELQKYIPNAIFSSNPCRIKFYTQEIVFFRQDLLYRMRRSCLIPPSREETDDPFEHLVATIT 451 (528)
Q Consensus 372 Dp~~~~~lPqpplp~~~~~~l~~~~~n~~~~sNPcri~~~~~eIvi~rdDl~~~l~r~~i~~p~~~~~~d~~~~l~ktiL 451 (528)
||+. ..+||||+++.+.+.+.+ +++++++|||+++++|++|+++|.+.+..+.+.. |.. +.+...++|+++|
T Consensus 341 D~~~-~~lPQ~~l~~~l~~~l~~--~~v~~lsNP~~i~l~G~~iLl~HG~~idDl~~~i---~~~--s~~~p~~~m~~~l 412 (504)
T PRK04036 341 DAVR-QAEPQPAFPEEIRSLFPE--HNVTFVSNPALVNLHGVDVLIYHGRSIDDVISLI---PGA--SYEKPGKAMEELL 412 (504)
T ss_pred cchh-hccCCCCccHHHHHhcCc--CCeEEecCCeEEEECCEEEEEECCCCHHHHHhhc---ccc--cccCHHHHHHHHH
Confidence 9985 899999999988544432 5899999999999999999999954444443321 111 1245678999999
Q ss_pred cCCCCCCCCCCCccccCCCCCcccccCCCcEEEecCCCCcceEEeCCeEEEcCCCCCC-------------CcEEEEEEC
Q 009713 452 HQSHLCPLPLTVQPIIWNYDHSLHLYPTPHAIVLADKSEQKAFKYTGITCFNPGSFSS-------------DSTFVAYRP 518 (528)
Q Consensus 452 ~Q~hL~Pl~~~~~pi~w~~d~~L~L~p~Pdvlil~d~~~~f~~~y~gc~~vNpGsf~~-------------~~sf~~y~p 518 (528)
+||||||++|++.|++|.+++.|.|++.||++++||.|..+...|+||++||||+|+. .++.+.+|.
T Consensus 413 ~~rHlaPt~p~~~~~~p~~~D~lvi~~~Pdv~~~GH~H~~~~~~~~g~~~IN~gsf~~~t~fq~~~~~~p~~~~~~lv~l 492 (504)
T PRK04036 413 KRRHLAPIYGGRTPIAPEKEDYLVIDEVPDIFHTGHVHINGYGKYRGVLLINSGTWQAQTEFQKRVNIVPTPARVPIVDL 492 (504)
T ss_pred HhcccCCCCCCCEEeCcCCCCCEEEecCCCEEEeCCCCccceEEECCEEEEECCcccccccccceeccCCCCCEEEEEEC
Confidence 9999999999999999999999999999999999999999989999999999999985 588899999
Q ss_pred CCCeEEe
Q 009713 519 CTQEVEF 525 (528)
Q Consensus 519 ~~~~~e~ 525 (528)
.|.+++.
T Consensus 493 ~tl~~~~ 499 (504)
T PRK04036 493 DTLEVTV 499 (504)
T ss_pred CCCcEEE
Confidence 9988764
No 4
>KOG1625 consensus DNA polymerase alpha-primase complex, polymerase-associated subunit B [Replication, recombination and repair]
Probab=100.00 E-value=5.8e-41 Score=350.77 Aligned_cols=311 Identities=19% Similarity=0.225 Sum_probs=237.6
Q ss_pred CCCcEEEEEEEEEcC---CCcE-----EEE----eCCc-EEEEEeccccccceeeccCeEEEEEEEEeeCCeEEEEEecC
Q 009713 176 QTGRRWVMGVISQLE---DGHF-----YLE----DLAA-SVEIDLSKAKITTGFFTENTIVVAEGEMLVDGIFQVITCGF 242 (528)
Q Consensus 176 ~~g~~~vlGml~~~~---~g~~-----~LE----D~sg-~V~Ldls~~~~~~g~f~~G~vV~veG~~~~~g~F~V~~i~~ 242 (528)
+++.++.+|||++.. +|++ .|| |.+| +|+||+++.+. -.++|||||+|+|.++.|+.|.|++|.-
T Consensus 243 Sq~~v~avG~I~~d~~~~~~kln~~Sv~Less~e~~~g~~Vrldls~l~e--~SiFPGQIVavkG~N~~G~~l~v~ki~~ 320 (600)
T KOG1625|consen 243 SQSSVYAVGQIVCDSTKDNGKLNEESVLLESSREDSSGVRVRLDLSRLKE--YSIFPGQIVAVKGKNPTGEKLTVEKILP 320 (600)
T ss_pred cccceEEEEEEecCCCCcccccCccceEeeeccccCCCceEEeehhhccc--eeecCCcEEEEeeecCCCCeEEeeeecc
Confidence 556679999999987 6654 454 5566 89999998653 4446999999999999999999999976
Q ss_pred CCCCCchhhhhhhcCcccCCCCCCchhhhHHHHHHHHhccCCeEEEEeCCccCcHh-HHHHHHHHHhcccCCCCCCeEEE
Q 009713 243 PPLEDRDQSLKLLAGYDFFGGGTLKKEDTLRLADLEKRAANDMFVILSDIWLDNEE-VMGKLEVVLDGFESVEVVPSLFV 321 (528)
Q Consensus 243 Pp~e~r~~s~~~~~~~d~fG~~~~~~~~~~~l~~~e~~~~~~~~v~lSdv~ld~~~-~le~L~~ll~~~~~~~~~P~~~V 321 (528)
+|+-+... ++.+. ....| .+..|+|+|++|+++.. .+|+|.++++.... ++|+++|
T Consensus 321 ~~plp~~~----------------~~~qe--d~~~~---~~~~ivvasGPyt~sDnl~yepL~dll~~v~~--~~pdvLI 377 (600)
T KOG1625|consen 321 IPPLPIPV----------------QPLQE--DATFE---ANTVIVVASGPYTASDNLSYEPLCDLLDYVNA--ERPDVLI 377 (600)
T ss_pred CCCCCCCc----------------Cchhh--hhhcc---ccceEEEEecCccCccccchhHHHHHHHHHhc--CCCCEEE
Confidence 55322100 01100 00111 12257888999987665 57999999996665 3899999
Q ss_pred EEccCCCCCC--CCCCcchhHHHHHHHHH-HHHHHcCCCCCCceeEEEecCCCCCCCCCCCCCCCCchhhHHHHhhhCCc
Q 009713 322 FMGNFCSHPC--NLSFHSFSSLRLQFGKL-GQMIAAHPRLKEHSRFLFIPGPDDAGPSTVLPRCALPKYLTEELQKYIPN 398 (528)
Q Consensus 322 l~G~F~s~~~--~~~~~~~~~~~~~f~~l-a~~l~~~p~l~~~~~~v~VPG~~Dp~~~~~lPqpplp~~~~~~l~~~~~n 398 (528)
|+|+|++..+ ...+.--.+|++.|+++ ..+|+.+ ...++++|+||+.+|+.+..+|||||+- ..++....+|
T Consensus 378 L~GPFlD~~h~~i~~~~~t~t~delF~~~i~~ile~~--~~~~~~vVlvPs~~Da~~~~vfPq~pf~---~~~~~~~~~~ 452 (600)
T KOG1625|consen 378 LFGPFLDSKHPLINKGALTITFDELFEKLILGILETL--VGSKTQVVLVPSTNDALCLPVFPQPPFA---RNRLSDEKKN 452 (600)
T ss_pred EeccccCccChhhccCCcCccHHHHHHHHHHHHHHhc--cCCcceEEEeccccccccCccCCCCchh---hhhccCcccc
Confidence 9999999743 22222224789999864 5566532 2256799999999999888999999993 2233222259
Q ss_pred eEEecCCeEEEEccEEEEEEehHHHHHHhhcccCCCCCCCCCChHHHHHHHHhcCCCCCCCCCCCccccCCCCC-----c
Q 009713 399 AIFSSNPCRIKFYTQEIVFFRQDLLYRMRRSCLIPPSREETDDPFEHLVATITHQSHLCPLPLTVQPIIWNYDH-----S 473 (528)
Q Consensus 399 ~~~~sNPcri~~~~~eIvi~rdDl~~~l~r~~i~~p~~~~~~d~~~~l~ktiL~Q~hL~Pl~~~~~pi~w~~d~-----~ 473 (528)
+.++.|||.++++++++.+++.|++.++.+++++..+....+|++.|+.+|||.|||+||++| |-...+|+ +
T Consensus 453 l~~~~nPc~f~in~v~vg~ts~D~l~~Ls~eE~~~~~~~~~~dR~~Rls~HlL~QrsfYPL~P---P~dl~~s~~~~~~~ 529 (600)
T KOG1625|consen 453 LKCVANPCLFSINGVEVGVTSTDTLLHLSSEEFFRNALQSNGDRLARLSSHLLTQRSFYPLFP---PEDLPVSYSLLLKY 529 (600)
T ss_pred eEEccCcceEEEccEEEEeecchHHHHhhhhHhhcCCCCcchHHHHHHHHHHhhcccccccCC---chhcchhhhhHHHH
Confidence 999999999999999999999999999999998775555567999999999999999999999 33334443 4
Q ss_pred ccccCCCcEEEecCCCCcceEEeCCeEEEcCCCCC---CCcEEEEEECC
Q 009713 474 LHLYPTPHAIVLADKSEQKAFKYTGITCFNPGSFS---SDSTFVAYRPC 519 (528)
Q Consensus 474 L~L~p~Pdvlil~d~~~~f~~~y~gc~~vNpGsf~---~~~sf~~y~p~ 519 (528)
+.+--+||+||++....+|+..++||+|||||++. ++|||+...-.
T Consensus 530 ~~~~~~PdIlIlPSdLr~Fvk~V~~~V~iNpGr~aKg~~~Gtfa~lti~ 578 (600)
T KOG1625|consen 530 AQIGSTPDILILPSDLRHFVKDVNGCVVINPGRLAKGTNGGTFAKLTIR 578 (600)
T ss_pred hccCCCCcEEEechhhHHHHHhcCCeEEEcchhhccCcCCceeEEEEEe
Confidence 57779999999999999999999999999999995 47899876544
No 5
>COG1311 HYS2 Archaeal DNA polymerase II, small subunit/DNA polymerase delta, subunit B [DNA replication, recombination, and repair]
Probab=100.00 E-value=2.6e-39 Score=337.02 Aligned_cols=357 Identities=17% Similarity=0.260 Sum_probs=276.9
Q ss_pred cCCCCCccCChhHHHHHHHHHHHHHHHHHhccCCCCCCccccccCCCCccceeecc-cccCCCCcEEEEEEEEEcC---C
Q 009713 116 HAGSLPIHGEASAKAALYRDRFLLLFQRVSRDQHFSRPSFDVVNSEFGSCEISTIQ-SLVGQTGRRWVMGVISQLE---D 191 (528)
Q Consensus 116 ~~~~~~l~~~~~~k~~~f~~Ry~~l~~rl~R~~~F~~~~~~~~~~~~~~~~it~I~-~Llg~~g~~~vlGml~~~~---~ 191 (528)
..+.+++.|.++++..+|++||..|+..|..++.- --+++++ .+.|+.+ +.++||++..+ .
T Consensus 91 ~~~~s~~~g~vedf~~~f~~R~~kL~~ii~~~~~~--------------~~~~~~~~~~~~g~d-v~Iig~v~~~r~t~~ 155 (481)
T COG1311 91 VRGNSTCGGIVEDFVPYFRDRYEKLSRIIREREEA--------------RYVSPIKKDLEGGSD-VKIIGEVNDVRETKN 155 (481)
T ss_pred cccccccceeHHHHHHHHHHHHHHHHHHHhccccC--------------CCcchhhcccccCCC-cEEEEEEccceeeec
Confidence 34567778899999999999999998888665521 1245555 6666555 78999998754 5
Q ss_pred Cc--EEEEeCCcEEEEEeccccc-cce--eeccCeEEEEEEEEeeCCeEEEEEecCCCCCCchhhhhhhcCcccCCCCCC
Q 009713 192 GH--FYLEDLAASVEIDLSKAKI-TTG--FFTENTIVVAEGEMLVDGIFQVITCGFPPLEDRDQSLKLLAGYDFFGGGTL 266 (528)
Q Consensus 192 g~--~~LED~sg~V~Ldls~~~~-~~g--~f~~G~vV~veG~~~~~g~F~V~~i~~Pp~e~r~~s~~~~~~~d~fG~~~~ 266 (528)
|+ +.+||.+|.|.+.+.+... ..- =++++.++++.|.+...+. +++++.+|..+.+.. ..
T Consensus 156 gh~ii~~ed~tG~v~vvl~k~~e~~~~~~dvl~d~vig~~g~~t~~~~-~a~~~~~p~Vpg~~~-------------~~- 220 (481)
T COG1311 156 GHFIISLEDTTGVVTVVLGKDREAGRFVVDVLFDEVIGVSGPVTPRSS-FADRIYLPDVPGLSL-------------NN- 220 (481)
T ss_pred ccEEEEcccccceEEEEeccchhhhhhHHhhcCCccccccCccCCccc-cCCcceeccCccccC-------------CC-
Confidence 75 5799999999999887322 111 2368999999999987777 699999997764311 00
Q ss_pred chhhhHHHHHHHHhccCCeEEEEeCCccCcHhHHHH-HHHHHhcccCC---CCCCeEEEEEccCCCCCCCCCCcc----h
Q 009713 267 KKEDTLRLADLEKRAANDMFVILSDIWLDNEEVMGK-LEVVLDGFESV---EVVPSLFVFMGNFCSHPCNLSFHS----F 338 (528)
Q Consensus 267 ~~~~~~~l~~~e~~~~~~~~v~lSdv~ld~~~~le~-L~~ll~~~~~~---~~~P~~~Vl~G~F~s~~~~~~~~~----~ 338 (528)
....+.+++++||+|.++..+++. +.+++.++... ..+..++|++||.+|+...+.+.. +
T Consensus 221 ------------~~~e~v~v~~isDih~GSk~F~~~~f~~fi~wl~g~~~~a~~vkyliiagd~VDGigiYpgq~~eL~i 288 (481)
T COG1311 221 ------------TGDERVYVALISDIHRGSKEFLEDEFEKFIDWLNGPGDLASRVKYLIIAGDVVDGIGIYPGQEEELVI 288 (481)
T ss_pred ------------CCCcceEEEEEeeeecccHHHHHHHHHHHHHHhcCCcccccceEEEEEecccccccccccCccccccc
Confidence 011445799999999999999854 44555554431 135689999999999876664332 3
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCceeEEEecCCCCCCCCCCCCCCCCchhhHHHHhhhCCceEEecCCeEEEEccEEEEEE
Q 009713 339 SSLRLQFGKLGQMIAAHPRLKEHSRFLFIPGPDDAGPSTVLPRCALPKYLTEELQKYIPNAIFSSNPCRIKFYTQEIVFF 418 (528)
Q Consensus 339 ~~~~~~f~~la~~l~~~p~l~~~~~~v~VPG~~Dp~~~~~lPqpplp~~~~~~l~~~~~n~~~~sNPcri~~~~~eIvi~ 418 (528)
.+.-++++++|++|.+ +.++++++++||||||.. .++|||.++....+.+ ...|+.|.||||.++++|..+++|
T Consensus 289 ~di~~qy~~~A~~L~~---vp~~I~v~i~PGnhDa~r-~a~PQp~~~~~~kslf--~~~n~~~v~NP~~~~l~G~~vL~~ 362 (481)
T COG1311 289 ADIYEQYEELAEFLDQ---VPEHIKVFIMPGNHDAVR-QALPQPHFPELIKSLF--SLNNLLFVSNPALVSLHGVDVLIY 362 (481)
T ss_pred ccchHHHHHHHHHHhh---CCCCceEEEecCCCCccc-cccCCCCcchhhcccc--cccceEecCCCcEEEECCEEEEEe
Confidence 4556889999999974 557999999999999994 9999996665544433 245799999999999999999999
Q ss_pred ehHHHHHHhhcccCCCCCCCCCChHHHHHHHHhcCCCCCCCCCCCccccCCCCCcccccCCCcEEEecCCCCcceEEeCC
Q 009713 419 RQDLLYRMRRSCLIPPSREETDDPFEHLVATITHQSHLCPLPLTVQPIIWNYDHSLHLYPTPHAIVLADKSEQKAFKYTG 498 (528)
Q Consensus 419 rdDl~~~l~r~~i~~p~~~~~~d~~~~l~ktiL~Q~hL~Pl~~~~~pi~w~~d~~L~L~p~Pdvlil~d~~~~f~~~y~g 498 (528)
|.--+++|+..- |.. +.+....+|+++|++|||||++|+..|+++...+.|.++++||++++||.|...+..|+|
T Consensus 363 hG~sidDii~~v---P~~--~~~~~~~ame~lLk~rHlaPtygg~~p~aP~~kD~lVIeevPDv~~~Ghvh~~g~~~y~g 437 (481)
T COG1311 363 HGRSIDDIIKLV---PGA--DYDSPLKAMEELLKRRHLAPTYGGTLPIAPETKDYLVIEEVPDVFHTGHVHKFGTGVYEG 437 (481)
T ss_pred cCCCHHHHHhhC---CCC--CccchHHHHHHHHHhcccCCCCCCccccccCCcCceeeccCCcEEEEccccccceeEEec
Confidence 966666665332 332 236788999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEcCCCCCCCc---EEEEEECCCCeEEe
Q 009713 499 ITCFNPGSFSSDS---TFVAYRPCTQEVEF 525 (528)
Q Consensus 499 c~~vNpGsf~~~~---sf~~y~p~~~~~e~ 525 (528)
|..||.|+|+... .-+..+|-+.+++.
T Consensus 438 v~~vns~T~q~qTefqk~vni~p~~~~v~v 467 (481)
T COG1311 438 VNLVNSGTWQEQTEFQKMVNINPTPGNVPV 467 (481)
T ss_pred cceEEeeeecchhccceEEEecCcccceeE
Confidence 9999999997554 45678888877764
No 6
>PF04042 DNA_pol_E_B: DNA polymerase alpha/epsilon subunit B; InterPro: IPR007185 DNA polymerase epsilon is essential for cell viability and chromosomal DNA replication in budding yeast. In addition, DNA polymerase epsilon may be involved in DNA repair and cell-cycle checkpoint control. The enzyme consists of at least four subunits in mammalian cells as well as in yeast. The largest subunit of DNA polymerase epsilon is responsible for polymerase activity. In mouse, the DNA polymerase epsilon subunit B is the second largest subunit of the DNA polymerase. A part of the N-terminal was found to be responsible for the interaction with SAP18. Experimental evidence suggests that this subunit may recruit histone deacetylase to the replication fork to modify the chromatin structure [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3E0J_C 3FLO_G.
Probab=100.00 E-value=3.8e-39 Score=312.86 Aligned_cols=203 Identities=32% Similarity=0.487 Sum_probs=152.9
Q ss_pred EEEEeCCccC-cHhHHHHHHHHHhccc-CCCCCCeEEEEEccCCCCCCCCCC-cc-hhHHHHHHHHHHHHHHcCCCCCCc
Q 009713 286 FVILSDIWLD-NEEVMGKLEVVLDGFE-SVEVVPSLFVFMGNFCSHPCNLSF-HS-FSSLRLQFGKLGQMIAAHPRLKEH 361 (528)
Q Consensus 286 ~v~lSdv~ld-~~~~le~L~~ll~~~~-~~~~~P~~~Vl~G~F~s~~~~~~~-~~-~~~~~~~f~~la~~l~~~p~l~~~ 361 (528)
|||+||+|++ +...+++|+++|.+++ . .+|.++||||||++....... .. ...++..+..+..+++.++++.++
T Consensus 1 Iv~~Sg~~~~~~~~~~~~L~~~l~~~~~~--~~p~~lIl~G~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 78 (209)
T PF04042_consen 1 IVFASGPFLDSDNLSLEPLRDLLSGVEDA--SKPDVLILMGPFIDSPHPYISSGSVPDSYSFEEDFLKELDSFLESILPS 78 (209)
T ss_dssp EEEEES--CTTT-HHHHHHHHHHHCCCHC--TTECEEEEES-SCBTTSHHHHHT---HHCCHHHHHHHHCHHHHCCCHCC
T ss_pred CEEEecCccCCCHhHHHHHHHHHHhcccc--CCCcEEEEeCCCcCccccccccccccccccccHHHHHHHHHHHhhcccc
Confidence 6899999999 6678999999999998 5 489999999999998543211 00 024455566667777777889899
Q ss_pred eeEEEecCCCCCCCCCCCCCCCCchhhHHHHhhhCCceEEecCCeEEEEccEEEEEEehHHHHHHhhcccCCCCCCCCCC
Q 009713 362 SRFLFIPGPDDAGPSTVLPRCALPKYLTEELQKYIPNAIFSSNPCRIKFYTQEIVFFRQDLLYRMRRSCLIPPSREETDD 441 (528)
Q Consensus 362 ~~~v~VPG~~Dp~~~~~lPqpplp~~~~~~l~~~~~n~~~~sNPcri~~~~~eIvi~rdDl~~~l~r~~i~~p~~~~~~d 441 (528)
++||||||++||++..++|||||++.++++++ +..+++++||||+++++|++|+++|+|++++|+|+++..+.. ..|
T Consensus 79 ~~vvlvPg~~D~~~~~~lPq~pl~~~~~~~~~-~~~~~~~~sNP~~~~i~~~~i~~~s~d~~~~l~~~~~~~~~~--~~~ 155 (209)
T PF04042_consen 79 TQVVLVPGPNDPTSSPVLPQPPLHSKLFPKLK-KYSNIHFVSNPCRISINGQEIGVTSGDILDDLRRYEISKSSS--SED 155 (209)
T ss_dssp SEEEEE--TTCTT-S-SCSB----TTTTCHHC-TTTTEEE--CSEEEEETTEEEEE-SSHHHHHHHHCCESHHHH--HS-
T ss_pred cEEEEeCCCccccccCCCCCCCCCHHHHhhhh-hcCceEEeCCCeEEEEeCCcEEEECCcHHHHHHhhccCCCcc--hhH
Confidence 99999999999998669999999999888775 344599999999999999999999999999999999865421 237
Q ss_pred hHHHHHHHHhcCCCCCCCCC-CCccccCCCCCcccccCCCcEEEecCCCCcce
Q 009713 442 PFEHLVATITHQSHLCPLPL-TVQPIIWNYDHSLHLYPTPHAIVLADKSEQKA 493 (528)
Q Consensus 442 ~~~~l~ktiL~Q~hL~Pl~~-~~~pi~w~~d~~L~L~p~Pdvlil~d~~~~f~ 493 (528)
+..++++|||+||||||++| ...|+.|++++.|.|+++||++|+||+..+|+
T Consensus 156 ~~~~l~~~il~q~hl~P~~pd~~~~~~~~~~~~l~l~~~Pdili~~~~~~~F~ 208 (209)
T PF04042_consen 156 RIERLMETILQQRHLYPLYPDTLPPIPWSYDDPLVLDPTPDILILPSDLPPFV 208 (209)
T ss_dssp HHHHHHHHHHHCTBS-TTSSE--B-GGGGGCGCTCGCS--SEEEEEESCSSEE
T ss_pred HHHHHHHHHHHhhcccCCCCCCccccccCcCCCcccCCCCcEEEECCCCcCcC
Confidence 88999999999999999999 88999999999999999999999999888886
No 7
>cd07386 MPP_DNA_pol_II_small_archeal_C archeal DNA polymerase II, small subunit, C-terminal metallophosphatase domain. The small subunit of the archeal DNA polymerase II contains a C-terminal metallophosphatase domain. This domain is thought to be functionally active because the active site residues required for phosphoesterase activity in other members of this superfamily are intact. The archeal replicative DNA polymerases are thought to possess intrinsic phosphatase activity that hydrolyzes the pyrophosphate released during nucleotide polymerization. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiestera
Probab=99.97 E-value=4.5e-31 Score=262.43 Aligned_cols=226 Identities=17% Similarity=0.250 Sum_probs=173.3
Q ss_pred EEEeCCccCcHhHHH-HHHHHHhcccCC---CCCCeEEEEEccCCCCCCCCCCc----chhHHHHHHHHHHHHHHcCCCC
Q 009713 287 VILSDIWLDNEEVMG-KLEVVLDGFESV---EVVPSLFVFMGNFCSHPCNLSFH----SFSSLRLQFGKLGQMIAAHPRL 358 (528)
Q Consensus 287 v~lSdv~ld~~~~le-~L~~ll~~~~~~---~~~P~~~Vl~G~F~s~~~~~~~~----~~~~~~~~f~~la~~l~~~p~l 358 (528)
+++||+|++++...+ .++.+++.+... ...|+++|++||+++........ ......+.++.++++|++ +
T Consensus 2 ~~iSDlHl~~~~~~~~~~~~l~~~l~~~~~~~~~~d~lvi~GDl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---L 78 (243)
T cd07386 2 VFISDVHVGSKTFLEDAFEKFVRWLNGEDDSASRVKYLIIAGDLVDGIGVYPGQEEELEILDIYEQYEEAAEYLSD---V 78 (243)
T ss_pred EEecccCCCchhhhHHHHHHHHHHHcCCcccccCccEEEEeCCcccccccCCcchhhhhhhhHHHHHHHHHHHHHh---c
Confidence 689999999885543 333444433332 13679999999999873211110 112334556777777774 4
Q ss_pred CCceeEEEecCCCCCCCCCCCCCCCCchhhHHHHhhhCCceEEecCCeEEEEccEEEEEEehHHHHHHhhcccCCCCCCC
Q 009713 359 KEHSRFLFIPGPDDAGPSTVLPRCALPKYLTEELQKYIPNAIFSSNPCRIKFYTQEIVFFRQDLLYRMRRSCLIPPSREE 438 (528)
Q Consensus 359 ~~~~~~v~VPG~~Dp~~~~~lPqpplp~~~~~~l~~~~~n~~~~sNPcri~~~~~eIvi~rdDl~~~l~r~~i~~p~~~~ 438 (528)
.+.+++++||||||++. ..+||+++++.+.+.+. .+++++.+|||+++++|++|+++|++.+.++.+.... .
T Consensus 79 ~~~~~v~~ipGNHD~~~-~~~pq~~l~~~l~~~~~--~~~v~~l~Np~~~~~~g~~i~~~~G~~~~d~~~~~~~---~-- 150 (243)
T cd07386 79 PSHIKIIIIPGNHDAVR-QAEPQPALPEEIRKLFL--PGNVEFVSNPALVKIHGVDVLIYHGRSIDDVVKLIPG---L-- 150 (243)
T ss_pred ccCCeEEEeCCCCCccc-ccCCCCCccHHHHhhcC--CCceEEeCCCCEEEECCEEEEEECCCCHHHHHHhCCC---C--
Confidence 45789999999999984 89999999998876552 4689999999999999999999995555554443210 0
Q ss_pred CCChHHHHHHHHhcCCCCCCCCCCCccccCCCCCcccccCCCcEEEecCCCCcceEEeCCeEEEcCCCCCCCcEEE---E
Q 009713 439 TDDPFEHLVATITHQSHLCPLPLTVQPIIWNYDHSLHLYPTPHAIVLADKSEQKAFKYTGITCFNPGSFSSDSTFV---A 515 (528)
Q Consensus 439 ~~d~~~~l~ktiL~Q~hL~Pl~~~~~pi~w~~d~~L~L~p~Pdvlil~d~~~~f~~~y~gc~~vNpGsf~~~~sf~---~ 515 (528)
..+...++++++++|+||||+++...|++|.+++.+.+++.||++|+||.+.++...++||.+||||+|.++++|- -
T Consensus 151 ~~~~~~~~~~~~l~~~hl~P~~~~~~~~~~~~~~~~~~~~~p~vii~Gh~h~~~~~~~~~~~~vn~Gsf~~~~~~~~~~~ 230 (243)
T cd07386 151 SYDKPGKAMEELLKRRHLAPIYGGRTPIAPEPEDYLVIDEVPDILHTGHVHVYGVGVYRGVLLVNSGTWQSQTEFQKKMN 230 (243)
T ss_pred CcccHHHHHHHHHhhcccCCCCCCCEeeCCCCCCCEEecCCCCEEEECCCCchHhEEECCEEEEECCCCcCCCCcceeec
Confidence 1256789999999999999999999999999999999999999999999999998899999999999999998873 4
Q ss_pred EECCCCeE
Q 009713 516 YRPCTQEV 523 (528)
Q Consensus 516 y~p~~~~~ 523 (528)
.+|..+++
T Consensus 231 ~~~~~~~~ 238 (243)
T cd07386 231 INPTPGKV 238 (243)
T ss_pred cCCCccee
Confidence 45555554
No 8
>cd07387 MPP_PolD2_C PolD2 (DNA polymerase delta, subunit 2), C-terminal domain. PolD2 (DNA polymerase delta, subunit 2) is an auxiliary subunit of the eukaryotic DNA polymerase delta (PolD) complex thought to play a regulatory role and to serve as a scaffold for PolD assembly by interacting simultaneously with all of the other three subunits. PolD2 is catalytically inactive and lacks the active site residues required for phosphoesterase activity in other members of this superfamily. PolD2 is also involved in the recruitment of several proteins regulating DNA metabolism, including p21, PDIP1, PDIP38, PDIP46, and WRN. Human PolD consists of four subunits: p125 (PolD1), p50 (PolD2), p66(PolD3), and p12(PolD4). PolD is one of three major replicases in eukaryotes. PolD also plays an essential role in translesion DNA synthesis, homologous recombination, and DNA repair. Within the PolD complex, PolD2 tightly associates with PolD3. PolD2 belongs to the metallophosphatase (MPP) superfamily
Probab=99.97 E-value=4.9e-29 Score=247.76 Aligned_cols=228 Identities=15% Similarity=0.091 Sum_probs=184.9
Q ss_pred eEEEEeCCccCcHhH----HHHHHHHHhcccCC------CCCCeEEEEEccCCCCCCCCC----------CcchhHHHHH
Q 009713 285 MFVILSDIWLDNEEV----MGKLEVVLDGFESV------EVVPSLFVFMGNFCSHPCNLS----------FHSFSSLRLQ 344 (528)
Q Consensus 285 ~~v~lSdv~ld~~~~----le~L~~ll~~~~~~------~~~P~~~Vl~G~F~s~~~~~~----------~~~~~~~~~~ 344 (528)
+++|+||+++++..+ ++.|.+++.|.... ..+..++|++||.+++..... .+......+.
T Consensus 1 ~i~~vSgL~ig~~~~~~~~l~ll~d~L~G~~g~~~~~~~~s~I~rlIIaGn~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (257)
T cd07387 1 YIALVSGLGLGGNAESSLSLQLLVDWLTGQLGDEEEQSSASSIVRLIIAGNSLSKSTQGKDSQTKARYLTKKSSAASVEA 80 (257)
T ss_pred CEEEEcccccCCCccchHHHHHHHHHhcCCCCCccccccccceEEEEEECCcccccccccchhhhhhccccccchhhHHH
Confidence 478999999998844 34555666554221 135789999999999753211 0112345677
Q ss_pred HHHHHHHHHcCCCCCCceeEEEecCCCCCCCCCCCCCCCCchhhHHHHhhhCCceEEecCCeEEEEccEEEEEEehHHHH
Q 009713 345 FGKLGQMIAAHPRLKEHSRFLFIPGPDDAGPSTVLPRCALPKYLTEELQKYIPNAIFSSNPCRIKFYTQEIVFFRQDLLY 424 (528)
Q Consensus 345 f~~la~~l~~~p~l~~~~~~v~VPG~~Dp~~~~~lPqpplp~~~~~~l~~~~~n~~~~sNPcri~~~~~eIvi~rdDl~~ 424 (528)
+++|+++|++ +.++.+|+++||+|||+. .++||||||++++++.+ .+.+++++|||+.++++|..|++++...++
T Consensus 81 ~~~ld~~l~~---l~~~i~V~imPG~~Dp~~-~~lPQqplh~~lfp~s~-~~~~~~~vtNP~~~~i~g~~vLgtsGqni~ 155 (257)
T cd07387 81 VKELDNFLSQ---LASSVPVDLMPGEFDPAN-HSLPQQPLHRCLFPKSS-NYSTLNLVTNPYEFSIDGVRVLGTSGQNVD 155 (257)
T ss_pred HHHHHHHHHh---hhcCCeEEECCCCCCccc-ccCCCCCCCHHHhhccc-ccCCcEEeCCCeEEEECCEEEEEECCCCHH
Confidence 8899999985 567899999999999994 99999999999887653 568999999999999999999999999999
Q ss_pred HHhhcccCCCCCCCCCChHHHHHHHHhcCCCCCCCCCCCccccC-CCCCcccccCCCcEEEecCCCCcceEEeCC-----
Q 009713 425 RMRRSCLIPPSREETDDPFEHLVATITHQSHLCPLPLTVQPIIW-NYDHSLHLYPTPHAIVLADKSEQKAFKYTG----- 498 (528)
Q Consensus 425 ~l~r~~i~~p~~~~~~d~~~~l~ktiL~Q~hL~Pl~~~~~pi~w-~~d~~L~L~p~Pdvlil~d~~~~f~~~y~g----- 498 (528)
+|.|..- . +..-.+|+.+|+||||+|++|++.|+++ .-.+.+.|...||++++|+++...+..|.|
T Consensus 156 Di~ky~~---~-----~~~l~~me~~L~wrHlaPTaPDTL~~yP~~~~Dpfvi~~~PhVyf~Gnq~~f~t~~~~~~~~~~ 227 (257)
T cd07387 156 DILKYSS---L-----ESRLDILERTLKWRHIAPTAPDTLWCYPFTDRDPFILEECPHVYFAGNQPKFGTKLVEGEEGQR 227 (257)
T ss_pred HHHHhCC---C-----CCHHHHHHHHHHhcccCCCCCCccccccCCCCCceeecCCCCEEEeCCCcceeeeEEEcCCCCe
Confidence 9988642 1 3457899999999999999999999999 345678899999999999988665555654
Q ss_pred eEEEcCCCCCCCcEEEEEECCCCeEEe
Q 009713 499 ITCFNPGSFSSDSTFVAYRPCTQEVEF 525 (528)
Q Consensus 499 c~~vNpGsf~~~~sf~~y~p~~~~~e~ 525 (528)
|++|+.++|+..++.+..|..|.+++.
T Consensus 228 v~lv~vP~Fs~t~~~vlvdl~tLe~~~ 254 (257)
T cd07387 228 VLLVCVPSFSKTGTAVLVNLRTLECEP 254 (257)
T ss_pred EEEEEeCCcCcCCEEEEEECCcCcEEE
Confidence 999999999999999999999999885
No 9
>COG5214 POL12 DNA polymerase alpha-primase complex, polymerase-associated subunit B [DNA replication, recombination, and repair]
Probab=99.95 E-value=1.1e-26 Score=234.91 Aligned_cols=315 Identities=14% Similarity=0.147 Sum_probs=221.2
Q ss_pred CCCcEEEEEEEEEcC---CC-----cEEEEeC----Cc-EEEEEeccccccceeeccCeEEEEEEEEeeCCeEEEEEe-c
Q 009713 176 QTGRRWVMGVISQLE---DG-----HFYLEDL----AA-SVEIDLSKAKITTGFFTENTIVVAEGEMLVDGIFQVITC-G 241 (528)
Q Consensus 176 ~~g~~~vlGml~~~~---~g-----~~~LED~----sg-~V~Ldls~~~~~~g~f~~G~vV~veG~~~~~g~F~V~~i-~ 241 (528)
++...+++|+|.-.. ++ .+.||-. .| +|+|++++.. .-.++||+||+|+|.+..||.|.|.+| .
T Consensus 201 sqs~~y~vGrIv~~s~~~g~~Ln~eSv~lesSr~gg~gvrVRL~l~~l~--~yS~FpGQIVavKGkN~~G~~ftv~~ilp 278 (581)
T COG5214 201 SQSSFYTVGRIVNPSTNFGHKLNSESVFLESSRDGGNGVRVRLNLAHLQ--RYSVFPGQIVAVKGKNTDGGKFTVEAILP 278 (581)
T ss_pred ccCceEEEEEecCCCcccccccCcceeeeeeecccCCCeEEEeehhhcc--ccccccccEEEEecccCCCCeEEeeeeec
Confidence 344568999998642 22 2577743 22 8999998753 334469999999999998999999999 4
Q ss_pred CCCCCCchhhhhhhcCcccCCCCCCchhhhHHHHHHHHhccCCeEEEEeCCccC-cHhHHHHHHHHHhcccCCCCCCeEE
Q 009713 242 FPPLEDRDQSLKLLAGYDFFGGGTLKKEDTLRLADLEKRAANDMFVILSDIWLD-NEEVMGKLEVVLDGFESVEVVPSLF 320 (528)
Q Consensus 242 ~Pp~e~r~~s~~~~~~~d~fG~~~~~~~~~~~l~~~e~~~~~~~~v~lSdv~ld-~~~~le~L~~ll~~~~~~~~~P~~~ 320 (528)
.|+.+-...+ +.++.+.+.. .-.+...+|++.|++|-- +....++|.++++..... ..+++
T Consensus 279 iP~~p~~p~s---------------~~qE~~~fqa-n~~~q~~~iv~~sGPy~~~dd~s~~pl~~~id~vn~n--~vdvl 340 (581)
T COG5214 279 IPVVPINPAS---------------DGQEKKYFQA-NTNNQPTSIVAFSGPYGPRDDLSGSPLFDAIDRVNAN--DVDVL 340 (581)
T ss_pred cCCcCCCcCc---------------chhhhhhhcc-ccCCCceEEEEEcCCCCCccccCcChHHHHHHHhccC--CccEE
Confidence 5544321111 1111111110 011233568888988854 444568999999976643 56799
Q ss_pred EEEccCCCCCC--CCC----CcchhHHHHHHHHH-HHHHHcCCCCCCceeEEEecCCCCCCC-CCCCCCCCCchhhHHHH
Q 009713 321 VFMGNFCSHPC--NLS----FHSFSSLRLQFGKL-GQMIAAHPRLKEHSRFLFIPGPDDAGP-STVLPRCALPKYLTEEL 392 (528)
Q Consensus 321 Vl~G~F~s~~~--~~~----~~~~~~~~~~f~~l-a~~l~~~p~l~~~~~~v~VPG~~Dp~~-~~~lPqpplp~~~~~~l 392 (528)
||||+|++-.+ +.. +.....++|.|-.. --+|.. + ...+-|+||+.+|+.. ..++||-||-.. .+
T Consensus 341 Il~GPFidi~h~li~~G~~~~t~~~~l~ElF~~r~tpiL~~---~-~~p~~vLIPstnDa~s~h~a~PQ~~~~r~---al 413 (581)
T COG5214 341 ILIGPFIDINHILIQYGATQSTPDSMLKELFIPRITPILDR---N-AGPKAVLIPSTNDATSCHNAFPQGPIGRN---AL 413 (581)
T ss_pred EEeccccCcchhhhhhCCCCCCChhHHHHHHHHhhhHHHhc---c-CCCceEEeccccchhhccccCCccccchh---hh
Confidence 99999998622 111 22357788888754 334542 1 2347999999999973 479999998643 12
Q ss_pred hhhCCceEEecCCeEEEEccEEEEEEehHHHHHHhhcccCCCCCCCCCChHHHHHHHHhcCCCCCCCCCCC--ccccC-C
Q 009713 393 QKYIPNAIFSSNPCRIKFYTQEIVFFRQDLLYRMRRSCLIPPSREETDDPFEHLVATITHQSHLCPLPLTV--QPIIW-N 469 (528)
Q Consensus 393 ~~~~~n~~~~sNPcri~~~~~eIvi~rdDl~~~l~r~~i~~p~~~~~~d~~~~l~ktiL~Q~hL~Pl~~~~--~pi~w-~ 469 (528)
+.-.|..++.|||.+.++..-+.+...|...++.+.+...-+....+++..++..|||.|||+||++|+. .-+.+ +
T Consensus 414 -~lp~nfkC~~NPc~F~INei~fg~Ss~Dt~l~~s~eE~f~~~l~s~g~rl~Ris~H~l~QR~fyPvFPg~~~~k~~ps~ 492 (581)
T COG5214 414 -RLPSNFKCTGNPCEFFINEILFGISSLDTPLEISSEECFHDSLLSGGDRLGRISYHLLFQRTFYPVFPGGSLEKCNPSS 492 (581)
T ss_pred -cCCccccccCCcceeEeeeeEEEeccCCchhhccHHHHhccccccccchHHHHHHHHHhhceeecccCCccccccCccc
Confidence 2224889999999999999999999999999998877655333334689999999999999999998843 22222 2
Q ss_pred CC-------CcccccCCCcEEEecCCCCcceEEeCCeEEEcCCCCC---CCcEEEEEECC
Q 009713 470 YD-------HSLHLYPTPHAIVLADKSEQKAFKYTGITCFNPGSFS---SDSTFVAYRPC 519 (528)
Q Consensus 470 ~d-------~~L~L~p~Pdvlil~d~~~~f~~~y~gc~~vNpGsf~---~~~sf~~y~p~ 519 (528)
.| .++.. -.||++|+++....|+..+..++++|||.+. +.|+|+-....
T Consensus 493 ldv~~l~l~Ef~~~-t~PDI~IvpS~L~hF~r~V~nvVvvNpG~~~k~tn~g~~a~it~~ 551 (581)
T COG5214 493 LDVVSLSLPEFMSM-TAPDIYIVPSKLKHFCRDVGNVVVVNPGLQAKETNEGIAAHITLP 551 (581)
T ss_pred cceEEecchhhhcc-CCCcEEEehHHHHHHHHhcCceEEECcchhhhhccccceEEEecC
Confidence 22 23333 7899999999999999999999999999994 56788766544
No 10
>KOG2732 consensus DNA polymerase delta, regulatory subunit 55 [Replication, recombination and repair]
Probab=99.95 E-value=1.6e-25 Score=227.84 Aligned_cols=347 Identities=14% Similarity=0.152 Sum_probs=252.1
Q ss_pred hHHHHHHHHHHHHHHHHHhccCCCCCCccccccCCCCccceeecccccC-CCCc--EEEEEEEEE---------------
Q 009713 127 SAKAALYRDRFLLLFQRVSRDQHFSRPSFDVVNSEFGSCEISTIQSLVG-QTGR--RWVMGVISQ--------------- 188 (528)
Q Consensus 127 ~~k~~~f~~Ry~~l~~rl~R~~~F~~~~~~~~~~~~~~~~it~I~~Llg-~~g~--~~vlGml~~--------------- 188 (528)
..+...|-.|..-+|.||.++..= .+. +=-+++.+++ ..|+ -+|+|-|-+
T Consensus 27 ~Qy~~iY~aRL~elRp~i~~~A~k------~wg------~~~~l~~~l~l~~~~~~C~vVGTlfk~~~lKPsIl~~v~~e 94 (435)
T KOG2732|consen 27 RQYFHIYFARLKELRPRILELAQK------KWG------SGPPLKKQLDLEKGKGECWVVGTLFKAMALKPSILDEVSNE 94 (435)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHh------hcC------CCCchhhheeeccCCccEEEEEehhhhcccCcHHHHHHhhh
Confidence 456678889999999999876410 000 1123444443 2233 389998853
Q ss_pred -------------cCCCcEEEEeCCcEEEEEeccccccceeeccCeEEEEEEEEeeCCeEEEEEecCCCCCCchhhhhhh
Q 009713 189 -------------LEDGHFYLEDLAASVEIDLSKAKITTGFFTENTIVVAEGEMLVDGIFQVITCGFPPLEDRDQSLKLL 255 (528)
Q Consensus 189 -------------~~~g~~~LED~sg~V~Ldls~~~~~~g~f~~G~vV~veG~~~~~g~F~V~~i~~Pp~e~r~~s~~~~ 255 (528)
..+++|.|||++|+|+|..+.. ....+.+|++|+|-|....+|.|+|..+.+|...++.+.+.
T Consensus 95 ~~~~p~~~~~~y~~ped~i~LEDe~grV~L~G~~i--~~~~~vTGvvvavlG~~~e~G~F~VeDv~fp~~~pq~~P~~-- 170 (435)
T KOG2732|consen 95 HKVAPDPEESNYHSPEDEIVLEDESGRVRLEGSFI--SHAVLVTGVVVAVLGKEAEAGRFLVEDVLFPGSSPQGKPRA-- 170 (435)
T ss_pred hccCCCCcccccCCccceEEEecCCceEEEEeecc--cccceeeeEEEEEecccccCceEEEEEEeccCCCccCCCCC--
Confidence 1246789999999999987632 34566789999999999889999999999997766532110
Q ss_pred cCcccCCCCCCchhhhHHHHHHHHhc-cCCeEEEEeCCccCcH-hHHHH---HHHHHhcccCCC-----CCCeEEEEEcc
Q 009713 256 AGYDFFGGGTLKKEDTLRLADLEKRA-ANDMFVILSDIWLDNE-EVMGK---LEVVLDGFESVE-----VVPSLFVFMGN 325 (528)
Q Consensus 256 ~~~d~fG~~~~~~~~~~~l~~~e~~~-~~~~~v~lSdv~ld~~-~~le~---L~~ll~~~~~~~-----~~P~~~Vl~G~ 325 (528)
.. .+.+++++|++-+++. +.++. |.+++.|--..+ .....+|++||
T Consensus 171 ------------------------~~~~~~~i~lVSGL~l~~~~~~~~~l~~l~D~l~g~lg~e~~~~~~~i~rliv~Gn 226 (435)
T KOG2732|consen 171 ------------------------TLPSQRKIALVSGLDLGGGSKNLLRLELLVDWLRGQLGNEYEQSASSIGRLIVAGN 226 (435)
T ss_pred ------------------------cCCCCCEEEEEeccccCCCcchhHHHHHHHHHHhcccCccccccccccceEEEecc
Confidence 01 2347889999998765 34444 445554432111 24678999999
Q ss_pred CCCCCCCC-C--C--------cchhHHHHHHHHHHHHHHcCCCCCCceeEEEecCCCCCCCCCCCCCCCCchhhHHHHhh
Q 009713 326 FCSHPCNL-S--F--------HSFSSLRLQFGKLGQMIAAHPRLKEHSRFLFIPGPDDAGPSTVLPRCALPKYLTEELQK 394 (528)
Q Consensus 326 F~s~~~~~-~--~--------~~~~~~~~~f~~la~~l~~~p~l~~~~~~v~VPG~~Dp~~~~~lPqpplp~~~~~~l~~ 394 (528)
.++..... + . .+....-+..++|.++|.+ +...+.+-++||++||. +.+|||||+++++++....
T Consensus 227 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ld~~L~~---~~~s~~VdimPG~~Dp~-~~~lPqqPlh~~lfp~s~~ 302 (435)
T KOG2732|consen 227 SLSFSIKILDSQSTSISRLTKKDSAASVIPVKELDNFLAQ---IPASISVDIMPGVNDPS-NFMLPQQPLHRCLFPKSPQ 302 (435)
T ss_pred ccchhhhccccceeeeeeccccccccccccHHHHHHHHHh---ccccCCccCCCCCCChh-hccCCcCCcchhhhccCcc
Confidence 99863211 1 0 0111111233466677764 55678999999999999 4999999999999887754
Q ss_pred hCCceEEecCCeEEEEccEEEEEEehHHHHHHhhcccCCCCCCCCCChHHHHHHHHhcCCCCCCCCCCCccccCCCC-Cc
Q 009713 395 YIPNAIFSSNPCRIKFYTQEIVFFRQDLLYRMRRSCLIPPSREETDDPFEHLVATITHQSHLCPLPLTVQPIIWNYD-HS 473 (528)
Q Consensus 395 ~~~n~~~~sNPcri~~~~~eIvi~rdDl~~~l~r~~i~~p~~~~~~d~~~~l~ktiL~Q~hL~Pl~~~~~pi~w~~d-~~ 473 (528)
-+..+..+|||..+++++.+++-++..-+++++|.... +..-.+++++|+|||++|+.|++..+++=.| +.
T Consensus 303 ~~~~~q~vTNPy~~~ld~~~vl~tSGqNvsDl~ry~~~--------~s~ld~le~tlkw~HvaPTaPDTL~cyPftekDP 374 (435)
T KOG2732|consen 303 SLSTLQLVTNPYEFSLDGARVLGTSGQNVSDLLRYSSK--------KSGLDALENTLKWGHVAPTAPDTLWCYPFTEKDP 374 (435)
T ss_pred ccchhhcccCceEEEEcCEEEEecCCccHHHHhhhcch--------hhHHHHHhhhheeccccCCCCCcccccccccCCC
Confidence 46678999999999999999999999999999998753 2345689999999999999999876666443 67
Q ss_pred ccccCCCcEEEecCCCCc--ceEEeC--CeEEEcCCCCCCCcEEEEEECCCCeEEe
Q 009713 474 LHLYPTPHAIVLADKSEQ--KAFKYT--GITCFNPGSFSSDSTFVAYRPCTQEVEF 525 (528)
Q Consensus 474 L~L~p~Pdvlil~d~~~~--f~~~y~--gc~~vNpGsf~~~~sf~~y~p~~~~~e~ 525 (528)
+.+...||++++|++..- -.+.-. .|.+|....|..++.-+..|..+..|+.
T Consensus 375 Fv~~~~Phvy~~GNqp~f~~r~i~~~g~~~~Lv~VP~FskT~~~vllnL~tL~~~~ 430 (435)
T KOG2732|consen 375 FVMDECPHVYIVGNQPKFGTRLIEGGGKNTLLVCVPKFSKTGVAVLLNLETLACET 430 (435)
T ss_pred eeecCCCeEEEecCCCcccceeeecCCceEEEEEcccccccceEEEEEccccccee
Confidence 889999999999986522 223333 4899999999999999999999998875
No 11
>PF12213 Dpoe2NT: DNA polymerases epsilon N terminal; InterPro: IPR024639 This domain is found in the N-terminal of DNA polymerase epsilon subunit B proteins. It contains a single completely conserved phenylalanine residue that may be functionally important. It forms a primarily alpha helical structure in which four helices are arranged in two hairpins with connecting loops containing beta strands which form a short parallel sheet. DNA polymerase epsilon is required in DNA replication for synthesis of the leading strand. The N-terminal domain has close structural relation to AAA+ protein C-terminal domains [].; PDB: 2V6Z_M.
Probab=99.47 E-value=2e-13 Score=109.96 Aligned_cols=70 Identities=30% Similarity=0.496 Sum_probs=60.0
Q ss_pred hHHHHHHHHHHHhcCCccCHHHHHHHHHhhccCCCCh-HHHHHHHHHHHhcccCCCcceeeHHHHHHHHHHH
Q 009713 3 GQTRKKIQKKMKIRGYGLRMDALDEILSFVNRFPDAE-DEAIDLLLDQFEHESSLKSSIIDKESVNRVTSVL 73 (528)
Q Consensus 3 ~~~r~~i~~~fk~~gl~l~~~al~~l~~~~~~~~~~~-~~~~~~~~~~i~k~~~~~~~~vd~~~l~~~~~~~ 73 (528)
+++|+.|.++||+|||.|++||+++|++.+.+.+..+ ++|+++|++.|.||+ +++++||++.|+++++||
T Consensus 3 ~~lrk~I~~~FkL~Gl~Lr~eA~~~l~~~l~~~~~~e~e~~l~~Ii~~v~kq~-Lss~~v~~~~ie~Av~ec 73 (73)
T PF12213_consen 3 AKLRKKIVKAFKLRGLSLRSEASKYLAEQLQSLSEEEREDWLDKIIDAVQKQP-LSSSIVDKEHIESAVKEC 73 (73)
T ss_dssp HHHHHHHHHHHHHTT-EE-HHHHHHHHHHTTTS-TTTHHHHHHHHHHHHTTS---SSSEE-HHHHHHHHHH-
T ss_pred HHHHHHHHHHhhhccceecHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhcCC-CCCCccCHHHHHHHHHcC
Confidence 5899999999999999999999999999999988776 489999999999997 999999999999999987
No 12
>PRK05340 UDP-2,3-diacylglucosamine hydrolase; Provisional
Probab=98.80 E-value=1.8e-07 Score=93.02 Aligned_cols=207 Identities=13% Similarity=0.112 Sum_probs=118.6
Q ss_pred eEEEEeCCccCcH--hHHHHHHHHHhcccCCCCCCeEEEEEccCCCCCCCCCCcchhHHHHHHHHHHHHHHcCCCCCCce
Q 009713 285 MFVILSDIWLDNE--EVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHS 362 (528)
Q Consensus 285 ~~v~lSdv~ld~~--~~le~L~~ll~~~~~~~~~P~~~Vl~G~F~s~~~~~~~~~~~~~~~~f~~la~~l~~~p~l~~~~ 362 (528)
+++|+||+|++.. ...+.+.+++.... ..|+.++++||+++.-.+... ......+..+.|..+-. ..+
T Consensus 2 ~i~~iSDlHl~~~~~~~~~~~~~~l~~~~---~~~d~l~i~GDl~d~~~g~~~-~~~~~~~~~~~l~~l~~------~g~ 71 (241)
T PRK05340 2 PTLFISDLHLSPERPAITAAFLRFLRGEA---RQADALYILGDLFEAWIGDDD-PSPFAREIAAALKALSD------SGV 71 (241)
T ss_pred cEEEEeecCCCCCChhHHHHHHHHHHhhh---ccCCEEEEccceeccccccCc-CCHHHHHHHHHHHHHHH------cCC
Confidence 4789999999854 33456666665322 269999999999985221110 11122222222222211 237
Q ss_pred eEEEecCCCCCCCCCCCCCCCCchhhHHHHhhhCCceEEecCCeEEEEccEEEEEEehHHH----------HHHhhccc-
Q 009713 363 RFLFIPGPDDAGPSTVLPRCALPKYLTEELQKYIPNAIFSSNPCRIKFYTQEIVFFRQDLL----------YRMRRSCL- 431 (528)
Q Consensus 363 ~~v~VPG~~Dp~~~~~lPqpplp~~~~~~l~~~~~n~~~~sNPcri~~~~~eIvi~rdDl~----------~~l~r~~i- 431 (528)
++++|+||||.... ..+. ...+++..+||..+.+.|..+.++|.|.. .++-||-.
T Consensus 72 ~v~~v~GNHD~~~~---------~~~~-----~~~g~~~l~~~~~~~~~g~~i~l~HGd~~~~~d~~y~~~r~~~r~~~~ 137 (241)
T PRK05340 72 PCYFMHGNRDFLLG---------KRFA-----KAAGMTLLPDPSVIDLYGQRVLLLHGDTLCTDDKAYQRFRRKVRNPWL 137 (241)
T ss_pred eEEEEeCCCchhhh---------HHHH-----HhCCCEEeCCcEEEEECCEEEEEECCcccccCCHHHHHHHHHHhCHHH
Confidence 89999999997531 1222 12467899999999999999999997765 23333321
Q ss_pred -----CCCCCCCCCChHHHHHHHHhc---CCCCCCCCCCCccccCC-CCCcccccCCCcEEEecCCCCcceEEeC----C
Q 009713 432 -----IPPSREETDDPFEHLVATITH---QSHLCPLPLTVQPIIWN-YDHSLHLYPTPHAIVLADKSEQKAFKYT----G 498 (528)
Q Consensus 432 -----~~p~~~~~~d~~~~l~ktiL~---Q~hL~Pl~~~~~pi~w~-~d~~L~L~p~Pdvlil~d~~~~f~~~y~----g 498 (528)
..|. +....+++.+-. +.+...- ....++.++ ....+.=+ -.+.+|.||.|.+....+. +
T Consensus 138 ~~~~~~~p~-----~~~~~ia~~~~~~s~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~i~GH~H~~~~~~~~~~~~~ 210 (241)
T PRK05340 138 QWLFLALPL-----SIRLRIAAKMRAKSKAANQSKS-LEIMDVNPEAVAALMEKH-GVDTLIHGHTHRPAIHQLQAGGQP 210 (241)
T ss_pred HHHHHhCCH-----HHHHHHHHHHHHHHHHhcCCCc-ccccCCCHHHHHHHHHHh-CCCEEEECcccCcceeeccCCCcc
Confidence 0111 122333433322 2211000 011111111 11122212 4589999999977554442 3
Q ss_pred eEEEcCCCCCCCcEEEEEECCCCe
Q 009713 499 ITCFNPGSFSSDSTFVAYRPCTQE 522 (528)
Q Consensus 499 c~~vNpGsf~~~~sf~~y~p~~~~ 522 (528)
|..+|-|.|...++|++++...-+
T Consensus 211 ~~~~~lgdw~~~~~~~~~~~~~~~ 234 (241)
T PRK05340 211 ATRIVLGDWHEQGSVLKVDADGVE 234 (241)
T ss_pred eEEEEeCCCCCCCeEEEEECCceE
Confidence 578999999888999999986533
No 13
>PRK09453 phosphodiesterase; Provisional
Probab=98.77 E-value=2.9e-07 Score=87.49 Aligned_cols=161 Identities=18% Similarity=0.223 Sum_probs=96.6
Q ss_pred eEEEEeCCccCcHhHHHHHHHHHhcccCCCCCCeEEEEEccCCCCCCCCCCcchhHHHHHHHHHHHHHHcCCCCCCceeE
Q 009713 285 MFVILSDIWLDNEEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHSRF 364 (528)
Q Consensus 285 ~~v~lSdv~ld~~~~le~L~~ll~~~~~~~~~P~~~Vl~G~F~s~~~~~~~~~~~~~~~~f~~la~~l~~~p~l~~~~~~ 364 (528)
+++++||+|.+ +.+++.+++.+... .|+.+|++||+++.-... .....+. .+++.+.|.+. ...+
T Consensus 2 ri~viSD~Hg~----~~~~~~~l~~~~~~--~~d~ii~lGDi~~~~~~~--~~~~~~~--~~~~~~~l~~~-----~~~v 66 (182)
T PRK09453 2 KLMFASDTHGS----LPATEKALELFAQS--GADWLVHLGDVLYHGPRN--PLPEGYA--PKKVAELLNAY-----ADKI 66 (182)
T ss_pred eEEEEEeccCC----HHHHHHHHHHHHhc--CCCEEEEcccccccCcCC--CCccccC--HHHHHHHHHhc-----CCce
Confidence 47899999954 34555666555432 689999999998741100 0000110 12334444332 2478
Q ss_pred EEecCCCCCCCCCCCCCCCCchhhHHHHhhhCCceEEecCCeEEEEccEEEEEEehHHHHHHhhcccCCCCCCCCCChHH
Q 009713 365 LFIPGPDDAGPSTVLPRCALPKYLTEELQKYIPNAIFSSNPCRIKFYTQEIVFFRQDLLYRMRRSCLIPPSREETDDPFE 444 (528)
Q Consensus 365 v~VPG~~Dp~~~~~lPqpplp~~~~~~l~~~~~n~~~~sNPcri~~~~~eIvi~rdDl~~~l~r~~i~~p~~~~~~d~~~ 444 (528)
++|+||||......+. .+| . ......+.+.+.+|+++|.+... + +
T Consensus 67 ~~V~GNhD~~~~~~~~--~~~------------~---~~~~~~~~l~g~~i~l~HG~~~~---------~------~--- 111 (182)
T PRK09453 67 IAVRGNCDSEVDQMLL--HFP------------I---MAPYQQVLLEGKRLFLTHGHLYG---------P------E--- 111 (182)
T ss_pred EEEccCCcchhhhhcc--CCc------------c---cCceEEEEECCeEEEEECCCCCC---------h------h---
Confidence 9999999974311110 111 1 11234467788999999875321 0 0
Q ss_pred HHHHHHhcCCCCCCCCCCCccccCCCCCcccccCCCcEEEecCCCCcceEEeCCeEEEcCCCCC----C-CcEEEEEECC
Q 009713 445 HLVATITHQSHLCPLPLTVQPIIWNYDHSLHLYPTPHAIVLADKSEQKAFKYTGITCFNPGSFS----S-DSTFVAYRPC 519 (528)
Q Consensus 445 ~l~ktiL~Q~hL~Pl~~~~~pi~w~~d~~L~L~p~Pdvlil~d~~~~f~~~y~gc~~vNpGsf~----~-~~sf~~y~p~ 519 (528)
.+ + . ..-.|+++.||+|.++.....|+.++||||+. . ..+|+.++.
T Consensus 112 ~~-----------~----------~-------~~~~d~vi~GHtH~p~~~~~~~~~~iNpGs~~~p~~~~~~s~~il~~- 162 (182)
T PRK09453 112 NL-----------P----------A-------LHDGDVLVYGHTHIPVAEKQGGIILFNPGSVSLPKGGYPASYGILDD- 162 (182)
T ss_pred hc-----------c----------c-------ccCCCEEEECCCCCCcceEECCEEEEECCCccccCCCCCCeEEEEEC-
Confidence 00 0 0 11248999999999998888999999999985 2 248998886
Q ss_pred CCeEEe
Q 009713 520 TQEVEF 525 (528)
Q Consensus 520 ~~~~e~ 525 (528)
+++|.
T Consensus 163 -~~~~~ 167 (182)
T PRK09453 163 -NVLSV 167 (182)
T ss_pred -CcEEE
Confidence 34443
No 14
>cd07398 MPP_YbbF-LpxH Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain. YbbF/LpxH is an Escherichia coli UDP-2,3-diacylglucosamine hydrolase thought to catalyze the fourth step of lipid A biosynthesis, in which a precursor UDP-2,3-diacylglucosamine is hydrolyzed to yield 2,3-diacylglucosamine 1-phosphate and UMP. YbbF belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues l
Probab=98.69 E-value=4.7e-08 Score=94.86 Aligned_cols=199 Identities=13% Similarity=0.092 Sum_probs=106.3
Q ss_pred EEEeCCccCcHhHH--HHHHHHHhcccCCCCCCeEEEEEccCCCCCCCCCCcchhHHHHHHHHHHHHHHcCCCCCCceeE
Q 009713 287 VILSDIWLDNEEVM--GKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHSRF 364 (528)
Q Consensus 287 v~lSdv~ld~~~~l--e~L~~ll~~~~~~~~~P~~~Vl~G~F~s~~~~~~~~~~~~~~~~f~~la~~l~~~p~l~~~~~~ 364 (528)
+|+||+|+++.... ..+..++.... +..|..+|++||+.+.-..........+.+.+..+...+. ..+++
T Consensus 1 ~~iSDlHlg~~~~~~~~~~~~~~~~~~--~~~~~~lvl~GDi~d~~~~~~~~~~~~~~~~~~~l~~~~~------~~~~v 72 (217)
T cd07398 1 LFISDLHLGDGGPAADFLLLFLLAALA--LGEADALYLLGDIFDLWFGDDEVVPPAAHEVLAALLRLAD------RGTRV 72 (217)
T ss_pred CEeeeecCCCCCCCHHHHHHHHHhhhc--cCCCCEEEEeccEEEEEecCCCCCChHHHHHHHHHHHHHH------CCCeE
Confidence 47899999876432 33444444322 1369999999999985222111112233333333443332 46799
Q ss_pred EEecCCCCCCCCCCCCCCCCchhhHHHHhhhCCceEEecCCe-EEEEccEEEEEEehHHHHHHhhccc------CCCCCC
Q 009713 365 LFIPGPDDAGPSTVLPRCALPKYLTEELQKYIPNAIFSSNPC-RIKFYTQEIVFFRQDLLYRMRRSCL------IPPSRE 437 (528)
Q Consensus 365 v~VPG~~Dp~~~~~lPqpplp~~~~~~l~~~~~n~~~~sNPc-ri~~~~~eIvi~rdDl~~~l~r~~i------~~p~~~ 437 (528)
++|+||||...... +. ........++|. .+.+.++++.+.|.|......+... ..+...
T Consensus 73 ~~v~GNHD~~~~~~---------~~-----~~~~~~~~~~~~~~~~~~g~~~~~~HG~~~d~~~~~~~~~~~~~~~~~~~ 138 (217)
T cd07398 73 YYVPGNHDFLLGDF---------FA-----EELGLILLPDPLVHLELDGKRILLEHGDQFDTDDRAYQLLRRLGRNPYDQ 138 (217)
T ss_pred EEECCCchHHHHhH---------HH-----HHcCCEEeccceEEEeeCCeEEEEECCCcCchhHHHHHHHHHHhCcHHHH
Confidence 99999999853111 11 112456777888 8999999999999665443321110 000000
Q ss_pred C-CCChHHHHHHHHhcCCCCCC--CCCCCccccCCCC------CcccccCCCcEEEecCCCCcceEEeCCeEEEcCCCC
Q 009713 438 E-TDDPFEHLVATITHQSHLCP--LPLTVQPIIWNYD------HSLHLYPTPHAIVLADKSEQKAFKYTGITCFNPGSF 507 (528)
Q Consensus 438 ~-~~d~~~~l~ktiL~Q~hL~P--l~~~~~pi~w~~d------~~L~L~p~Pdvlil~d~~~~f~~~y~gc~~vNpGsf 507 (528)
. -....-.....+..+....- ............+ ..+.-..-++++|.||.|.++...+.++..+|+|+|
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~GH~H~~~~~~~~~~~~~n~G~W 217 (217)
T cd07398 139 LLFLNRPLNRRRGIAGGLRWSSRYLKKKVKKAVAIIDVFEEAVARLARRKGVDGVICGHTHRPALHELDGKLYINLGDW 217 (217)
T ss_pred HHHhcchHHHHHHHHHhhhhhhHHHHhCccchHHHHHHHHHHHHHHHHhcCCCEEEECCCCCCCeEEECCEEEEECCCC
Confidence 0 00001111222221111100 0000000000111 111235678999999999999988999999999998
No 15
>TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase. This model represents LpxH, UDP-2,3-diacylglucosamine hydrolase, and essential enzyme in E. coli that catalyzes the fourth step in lipid A biosynthesis. Note that Pseudomonas aeruginosa has both a member of this family that shares this function and a more distant homolog, designated LpxH2, that does not. Many species that produce lipid A lack an lpxH gene in this family; some of those species have an lpxH2 gene instead, although for which the function is unknown.
Probab=98.69 E-value=3e-07 Score=90.92 Aligned_cols=205 Identities=14% Similarity=0.155 Sum_probs=113.8
Q ss_pred EEEeCCccCcH--hHHHHHHHHHhcccCCCCCCeEEEEEccCCCCCCCCCCcchhHHHHHHHHHHHHHHcCCCCCCceeE
Q 009713 287 VILSDIWLDNE--EVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHSRF 364 (528)
Q Consensus 287 v~lSdv~ld~~--~~le~L~~ll~~~~~~~~~P~~~Vl~G~F~s~~~~~~~~~~~~~~~~f~~la~~l~~~p~l~~~~~~ 364 (528)
+++||+|++.. ...+.+.+.+..... .|+.+|++||+++.-..... . ..+. +++...|.++.. ..+.+
T Consensus 2 ~~iSDlHl~~~~~~~~~~~l~~l~~~~~---~~d~lii~GDi~d~~~~~~~-~-~~~~---~~~~~~l~~L~~--~~~~v 71 (231)
T TIGR01854 2 LFISDLHLSPERPDITALFLDFLREEAR---KADALYILGDLFEAWIGDDD-P-STLA---RSVAQAIRQVSD--QGVPC 71 (231)
T ss_pred eEEEecCCCCCChhHHHHHHHHHHhhhc---cCCEEEEcCceeccccCCCC-C-CHHH---HHHHHHHHHHHH--CCCeE
Confidence 58899999854 233455555554332 59999999999985221111 1 1111 222222322211 24789
Q ss_pred EEecCCCCCCCCCCCCCCCCchhhHHHHhhhCCceEEecCCeEEEEccEEEEEEehHHHH------HHhhcccCCCCCC-
Q 009713 365 LFIPGPDDAGPSTVLPRCALPKYLTEELQKYIPNAIFSSNPCRIKFYTQEIVFFRQDLLY------RMRRSCLIPPSRE- 437 (528)
Q Consensus 365 v~VPG~~Dp~~~~~lPqpplp~~~~~~l~~~~~n~~~~sNPcri~~~~~eIvi~rdDl~~------~l~r~~i~~p~~~- 437 (528)
++||||||.... .. +.+ ..++++..||..+.+.|+.++++|.|.+. .+-|..+..|.-.
T Consensus 72 ~~v~GNHD~~~~---------~~----~~~-~~gi~~l~~~~~~~~~g~~ill~HGd~~~~~d~~y~~~r~~~r~~~~~~ 137 (231)
T TIGR01854 72 YFMHGNRDFLIG---------KR----FAR-EAGMTLLPDPSVIDLYGQKVLLMHGDTLCTDDTAYQAFRAKVHQPWLQR 137 (231)
T ss_pred EEEcCCCchhhh---------HH----HHH-HCCCEEECCCEEEEECCEEEEEEcCccccCCCHHHHHHHHHHhCHHHHH
Confidence 999999997421 11 211 23689999999999999999999966441 1111111111000
Q ss_pred ----CCCChHHHHHHHH---hcCCCCC-CCC-CCCccccCCCCCcccccCCCcEEEecCCCCcceEEeC----CeEEEcC
Q 009713 438 ----ETDDPFEHLVATI---THQSHLC-PLP-LTVQPIIWNYDHSLHLYPTPHAIVLADKSEQKAFKYT----GITCFNP 504 (528)
Q Consensus 438 ----~~~d~~~~l~kti---L~Q~hL~-Pl~-~~~~pi~w~~d~~L~L~p~Pdvlil~d~~~~f~~~y~----gc~~vNp 504 (528)
-..+....+++.+ .+|.+.+ |.. ....+- .....+.- --++++|.||.|.+....++ +++-+|-
T Consensus 138 ~~~~l~~~~r~~l~~~~~~~s~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~i~GHtH~~~~~~~~~~~~~~~~~~l 214 (231)
T TIGR01854 138 LFLHLPLAVRVKLARKIRAESRADKQMKSQDIMDVNPA--EVAAVMRR-YGVDRLIHGHTHRPAIHPLQADGQPATRIVL 214 (231)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHhcCCCcchhhCCCHH--HHHHHHHH-cCCCEEEECCccCcceeecccCCCccEEEEE
Confidence 0001122233333 2222221 110 000010 01111221 25589999999988776665 7899999
Q ss_pred CCCCCCcEEEEEEC
Q 009713 505 GSFSSDSTFVAYRP 518 (528)
Q Consensus 505 Gsf~~~~sf~~y~p 518 (528)
|.|...++|.+++.
T Consensus 215 gdW~~~~~~~~~~~ 228 (231)
T TIGR01854 215 GDWYRQGSILRVDA 228 (231)
T ss_pred CCCccCCeEEEEcC
Confidence 99988899998875
No 16
>cd00841 MPP_YfcE Escherichia coli YfcE and related proteins, metallophosphatase domain. YfcE is a manganase-dependent metallophosphatase, found in bacteria and archaea, that cleaves bis-p-nitrophenyl phosphate, thymidine 5'-monophosphate-p-nitrophenyl ester, and p-nitrophenyl phosphorylcholine, but is unable to hydrolyze 2',3 ' or 3',5' cyclic nucleic phosphodiesters, and various phosphomonoesters, including p-nitrophenyl phosphate. This family also includes the Bacilus subtilis YsnB and Methanococcus jannaschii MJ0936 proteins. This domain family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid ph
Probab=98.57 E-value=1.4e-06 Score=80.26 Aligned_cols=147 Identities=17% Similarity=0.162 Sum_probs=94.0
Q ss_pred eEEEEeCCccCcHhHHHHHHHHHhcccCCCCCCeEEEEEccCCCCCCCCCCcchhHHHHHHHHHHHHHHcCCCCCCceeE
Q 009713 285 MFVILSDIWLDNEEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHSRF 364 (528)
Q Consensus 285 ~~v~lSdv~ld~~~~le~L~~ll~~~~~~~~~P~~~Vl~G~F~s~~~~~~~~~~~~~~~~f~~la~~l~~~p~l~~~~~~ 364 (528)
+++++||+|... +.++.+++.+. .++.+|++||+++..... . + .....+
T Consensus 1 ~i~~isD~H~~~----~~~~~~~~~~~----~~d~ii~~GD~~~~~~~~-----~------------~------~~~~~~ 49 (155)
T cd00841 1 KIGVISDTHGSL----ELLEKALELFG----DVDLIIHAGDVLYPGPLN-----E------------L------ELKAPV 49 (155)
T ss_pred CEEEEecCCCCH----HHHHHHHHHhc----CCCEEEECCccccccccc-----h------------h------hcCCcE
Confidence 377999999653 45556666543 288999999998753210 0 1 123578
Q ss_pred EEecCCCCCCCCCCCCCCCCchhhHHHHhhhCCceEEecCCeEEEEccEEEEEEehHHHHHHhhcccCCCCCCCCCChHH
Q 009713 365 LFIPGPDDAGPSTVLPRCALPKYLTEELQKYIPNAIFSSNPCRIKFYTQEIVFFRQDLLYRMRRSCLIPPSREETDDPFE 444 (528)
Q Consensus 365 v~VPG~~Dp~~~~~lPqpplp~~~~~~l~~~~~n~~~~sNPcri~~~~~eIvi~rdDl~~~l~r~~i~~p~~~~~~d~~~ 444 (528)
++|+||||... . + +.+| ....+.+.+.+|+++|....... +..+
T Consensus 50 ~~V~GNhD~~~-~--------------~-~~~p------~~~~~~~~g~~i~v~Hg~~~~~~--------------~~~~ 93 (155)
T cd00841 50 IAVRGNCDGEV-D--------------F-PILP------EEAVLEIGGKRIFLTHGHLYGVK--------------NGLD 93 (155)
T ss_pred EEEeCCCCCcC-C--------------c-ccCC------ceEEEEECCEEEEEECCcccccc--------------cchh
Confidence 99999999863 1 0 1122 22457788999999986542111 0000
Q ss_pred HHHHHHhcCCCCCCCCCCCccccCCCCCcccccCCCcEEEecCCCCcceEEeCCeEEEcCCCCCC-----CcEEEEEECC
Q 009713 445 HLVATITHQSHLCPLPLTVQPIIWNYDHSLHLYPTPHAIVLADKSEQKAFKYTGITCFNPGSFSS-----DSTFVAYRPC 519 (528)
Q Consensus 445 ~l~ktiL~Q~hL~Pl~~~~~pi~w~~d~~L~L~p~Pdvlil~d~~~~f~~~y~gc~~vNpGsf~~-----~~sf~~y~p~ 519 (528)
. . .+.-..-.|+++.||.|.++....+|+.++|||+... ..+|+.++..
T Consensus 94 ~--~------------------------~~~~~~~~d~vi~GHtH~~~~~~~~~~~~inpGs~~~~~~~~~~~~~i~~~~ 147 (155)
T cd00841 94 R--L------------------------YLAKEGGADVVLYGHTHIPVIEKIGGVLLLNPGSLSLPRGGGPPTYAILEID 147 (155)
T ss_pred h--h------------------------hhhhhcCCCEEEECcccCCccEEECCEEEEeCCCccCcCCCCCCeEEEEEec
Confidence 0 0 0001123489999999999988899999999999852 2388888876
Q ss_pred C-CeEE
Q 009713 520 T-QEVE 524 (528)
Q Consensus 520 ~-~~~e 524 (528)
. .++|
T Consensus 148 ~~~~~~ 153 (155)
T cd00841 148 DKGEVE 153 (155)
T ss_pred CCCcEE
Confidence 3 4444
No 17
>cd07394 MPP_Vps29 Homo sapiens Vps29 and related proteins, metallophosphatase domain. Vps29 (vacuolar sorting protein 29), also known as vacuolar membrane protein Pep11, is a subunit of the retromer complex which is responsible for the retrieval of mannose-6-phosphate receptors (MPRs) from the endosomes for retrograde transport back to the Golgi. Vps29 has a phosphoesterase fold that acts as a protein interaction scaffold for retromer complex assembly as well as a phosphatase with specificity for the cytoplasmic tail of the MPR. The retromer includes the following 5 subunits: Vps35, Vps26, Vps29, and a dimer of the sorting nexins Vps5 (Snx1), and Vps17 (Snx2). Vps29 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily incl
Probab=98.54 E-value=7.5e-06 Score=77.85 Aligned_cols=148 Identities=18% Similarity=0.223 Sum_probs=96.1
Q ss_pred EEEEeCCccCcHh--HHHHHHHHHhcccCCCCCCeEEEEEccCCCCCCCCCCcchhHHHHHHHHHHHHHHcCCCCCCcee
Q 009713 286 FVILSDIWLDNEE--VMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHSR 363 (528)
Q Consensus 286 ~v~lSdv~ld~~~--~le~L~~ll~~~~~~~~~P~~~Vl~G~F~s~~~~~~~~~~~~~~~~f~~la~~l~~~p~l~~~~~ 363 (528)
|.|+||.|++... ..+.+.++++. ..++.+|.|||+++. +..+.+.++ +..
T Consensus 2 i~viSDtHl~~~~~~~~~~~~~~~~~-----~~~d~iih~GDi~~~-----------------~~~~~l~~~-----~~~ 54 (178)
T cd07394 2 VLVIGDLHIPHRASDLPAKFKKLLVP-----GKIQHVLCTGNLCSK-----------------ETYDYLKTI-----APD 54 (178)
T ss_pred EEEEEecCCCCCchhhHHHHHHHhcc-----CCCCEEEECCCCCCH-----------------HHHHHHHhh-----CCc
Confidence 6799999987653 22446666653 258899999999751 112223221 125
Q ss_pred EEEecCCCCCCCCCCCCCCCCchhhHHHHhhhCCceEEecCCeEEEEccEEEEEEehHHHHHHhhcccCCCCCCCCCChH
Q 009713 364 FLFIPGPDDAGPSTVLPRCALPKYLTEELQKYIPNAIFSSNPCRIKFYTQEIVFFRQDLLYRMRRSCLIPPSREETDDPF 443 (528)
Q Consensus 364 ~v~VPG~~Dp~~~~~lPqpplp~~~~~~l~~~~~n~~~~sNPcri~~~~~eIvi~rdDl~~~l~r~~i~~p~~~~~~d~~ 443 (528)
+..|.||+|... .+| .. ..+.+.|.+|.++|.... .+.. ..
T Consensus 55 ~~~V~GN~D~~~-------~lp------------~~------~~~~~~g~~i~l~HG~~~---------~~~~-----~~ 95 (178)
T cd07394 55 VHIVRGDFDENL-------NYP------------ET------KVITVGQFKIGLIHGHQV---------VPWG-----DP 95 (178)
T ss_pred eEEEECCCCccc-------cCC------------Cc------EEEEECCEEEEEEECCcC---------CCCC-----CH
Confidence 889999999652 122 11 357889999999997521 0110 01
Q ss_pred HHHHHHHhcCCCCCCCCCCCccccCCCCCcccccCCCcEEEecCCCCcceEEeCCeEEEcCCCCCC---------CcEEE
Q 009713 444 EHLVATITHQSHLCPLPLTVQPIIWNYDHSLHLYPTPHAIVLADKSEQKAFKYTGITCFNPGSFSS---------DSTFV 514 (528)
Q Consensus 444 ~~l~ktiL~Q~hL~Pl~~~~~pi~w~~d~~L~L~p~Pdvlil~d~~~~f~~~y~gc~~vNpGsf~~---------~~sf~ 514 (528)
+.+ +.+..+ .-+|+++.||+|.++...++|+.++||||... ..||+
T Consensus 96 ~~~-~~~~~~------------------------~~~dvii~GHTH~p~~~~~~g~~viNPGSv~~~~~~~~~~~~~sya 150 (178)
T cd07394 96 DSL-AALQRQ------------------------LDVDILISGHTHKFEAFEHEGKFFINPGSATGAFSPLDPNVIPSFV 150 (178)
T ss_pred HHH-HHHHHh------------------------cCCCEEEECCCCcceEEEECCEEEEECCCCCCCCCCCCCCCCCeEE
Confidence 111 111111 22389999999999998999999999999851 24999
Q ss_pred EEECCCCeEE
Q 009713 515 AYRPCTQEVE 524 (528)
Q Consensus 515 ~y~p~~~~~e 524 (528)
.++...+.++
T Consensus 151 il~~~~~~~~ 160 (178)
T cd07394 151 LMDIQGSKVV 160 (178)
T ss_pred EEEecCCeEE
Confidence 9998777654
No 18
>COG2908 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.47 E-value=7.6e-07 Score=87.06 Aligned_cols=212 Identities=13% Similarity=0.123 Sum_probs=128.9
Q ss_pred EEEeCCccC--cHhHHHHHHHHHhcccCCCCCCeEEEEEccCCCCCCCCCCcchhHHHHHHHHHHHHHHcCCCCCCceeE
Q 009713 287 VILSDIWLD--NEEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHSRF 364 (528)
Q Consensus 287 v~lSdv~ld--~~~~le~L~~ll~~~~~~~~~P~~~Vl~G~F~s~~~~~~~~~~~~~~~~f~~la~~l~~~p~l~~~~~~ 364 (528)
+|+||+||+ .|..-+-|.+++...+. .-.++.++||+.+.=.+.. .-.+..++...+|..+- .+.+++
T Consensus 1 lFISDlHL~~~~p~~t~~fl~Fl~~~a~---~ad~lyilGDifd~w~g~~-~~~~~~~~V~~~l~~~a------~~G~~v 70 (237)
T COG2908 1 LFISDLHLGPKRPALTAFFLDFLREEAA---QADALYILGDIFDGWIGDD-EPPQLHRQVAQKLLRLA------RKGTRV 70 (237)
T ss_pred CeeeccccCCCCcHHHHHHHHHHHhccc---cCcEEEEechhhhhhhcCC-cccHHHHHHHHHHHHHH------hcCCeE
Confidence 478999998 34444777777775433 2479999999998622211 11122233333333222 256999
Q ss_pred EEecCCCCCCCCCCCCCCCCchhhHHHHhhhCCceEEecCCeEEEEccEEEEEEehHHHH-HHhhcccCCCCCCCC----
Q 009713 365 LFIPGPDDAGPSTVLPRCALPKYLTEELQKYIPNAIFSSNPCRIKFYTQEIVFFRQDLLY-RMRRSCLIPPSREET---- 439 (528)
Q Consensus 365 v~VPG~~Dp~~~~~lPqpplp~~~~~~l~~~~~n~~~~sNPcri~~~~~eIvi~rdDl~~-~l~r~~i~~p~~~~~---- 439 (528)
++||||+|-. +.+++.+....+.+++.|+.+.++|..+++.|.|.+- .........-.....
T Consensus 71 ~~i~GN~Dfl-------------l~~~f~~~~g~~~l~~~~~~~~l~g~~~Ll~HGD~f~t~~~~y~~~r~~~~~~~~~~ 137 (237)
T COG2908 71 YYIHGNHDFL-------------LGKRFAQEAGGMTLLPDPIVLDLYGKRILLAHGDTFCTDDRAYQWFRYKVHWAWLQL 137 (237)
T ss_pred EEecCchHHH-------------HHHHHHhhcCceEEcCcceeeeecCcEEEEEeCCcccchHHHHHHHHHHcccHHHHH
Confidence 9999999943 2344445667789999999999999999999977532 221111100000000
Q ss_pred ------CChHHHHHHHHhcCCCCCCCCCCCccccC-----CC-CCcccccCCCcEEEecCCCCcceEEeCCeEEEcCCCC
Q 009713 440 ------DDPFEHLVATITHQSHLCPLPLTVQPIIW-----NY-DHSLHLYPTPHAIVLADKSEQKAFKYTGITCFNPGSF 507 (528)
Q Consensus 440 ------~d~~~~l~ktiL~Q~hL~Pl~~~~~pi~w-----~~-d~~L~L~p~Pdvlil~d~~~~f~~~y~gc~~vNpGsf 507 (528)
...-.+++..+.+++...+--. ...+.| .+ .+.+. .--=+.+|.||.|.+-.....|++-+|-|+|
T Consensus 138 lflnl~l~~R~ri~~k~r~~s~~~k~~~-~~~~~i~d~~~~~v~~~~~-~~~vd~vI~GH~Hr~ai~~i~~~~yi~lGdW 215 (237)
T COG2908 138 LFLNLPLRVRRRIAYKIRSLSSWAKKKV-KKAVNIMDVNPAAVADEAR-RHGVDGVIHGHTHRPAIHNIPGITYINLGDW 215 (237)
T ss_pred HHHHhHHHHHHHHHHHHHHhhHHhHHhh-hhHHHHHHhhHHHHHHHHH-HcCCCEEEecCcccHhhccCCCceEEecCcc
Confidence 0012456777777663322200 011111 11 01111 1223889999999887778889999999999
Q ss_pred CCCcEEEEEECCCCeE
Q 009713 508 SSDSTFVAYRPCTQEV 523 (528)
Q Consensus 508 ~~~~sf~~y~p~~~~~ 523 (528)
.+.+++++.+...-+.
T Consensus 216 ~~~~s~~~v~~~~~~~ 231 (237)
T COG2908 216 VSEGSILEVDDGGLEL 231 (237)
T ss_pred hhcceEEEEecCcEEE
Confidence 9999999888765443
No 19
>PF12850 Metallophos_2: Calcineurin-like phosphoesterase superfamily domain; InterPro: IPR024654 Domains in this entry are members of the calcineurin-like phosphoesterase domain superfamily [].; PDB: 2GJU_A 1Z2W_A 1Z2X_B 3PSO_B 3PSN_B 1W24_A 2R17_B 3QFN_B 3QFO_A 3QFM_A ....
Probab=98.42 E-value=5.9e-07 Score=82.05 Aligned_cols=150 Identities=15% Similarity=0.226 Sum_probs=91.5
Q ss_pred eEEEEeCCccCcHhHHHHHHHHHhcccCCCCCCeEEEEEccCCCCCCCCCCcchhHHHHHHHHHHHHHHcCCCCCCceeE
Q 009713 285 MFVILSDIWLDNEEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHSRF 364 (528)
Q Consensus 285 ~~v~lSdv~ld~~~~le~L~~ll~~~~~~~~~P~~~Vl~G~F~s~~~~~~~~~~~~~~~~f~~la~~l~~~p~l~~~~~~ 364 (528)
+++++||+|.+... ++++++.. . .|..+|++||+++. + ++.+.+++ .++
T Consensus 2 ki~~~sD~H~~~~~----~~~~~~~~-~---~~d~vi~~GDi~~~------------~----~~~~~~~~-------~~~ 50 (156)
T PF12850_consen 2 KIAVISDLHGNLDA----LEAVLEYI-N---EPDFVIILGDIFDP------------E----EVLELLRD-------IPV 50 (156)
T ss_dssp EEEEEE--TTTHHH----HHHHHHHH-T---TESEEEEES-SCSH------------H----HHHHHHHH-------HEE
T ss_pred EEEEEeCCCCChhH----HHHHHHHh-c---CCCEEEECCCchhH------------H----HHHHHHhc-------CCE
Confidence 57899999997664 44555544 2 49999999998761 2 23333332 179
Q ss_pred EEecCCCCCCCCCCCCCCCCchhhHHHHhhhCCceEEecCCeEEEEccEEEEEEehHHHHHHhhcccCCCCCCCCCChHH
Q 009713 365 LFIPGPDDAGPSTVLPRCALPKYLTEELQKYIPNAIFSSNPCRIKFYTQEIVFFRQDLLYRMRRSCLIPPSREETDDPFE 444 (528)
Q Consensus 365 v~VPG~~Dp~~~~~lPqpplp~~~~~~l~~~~~n~~~~sNPcri~~~~~eIvi~rdDl~~~l~r~~i~~p~~~~~~d~~~ 444 (528)
++|+||||-. .+|+...- .+..+..++.+.+.++++.+.+... .. ...+
T Consensus 51 ~~v~GNHD~~---~~~~~~~~--------------~~~~~~~~~~~~~~~i~~~H~~~~~--------~~------~~~~ 99 (156)
T PF12850_consen 51 YVVRGNHDNW---AFPNENDE--------------EYLLDALRLTIDGFKILLSHGHPYD--------VQ------WDPA 99 (156)
T ss_dssp EEE--CCHST---HHHSEECT--------------CSSHSEEEEEETTEEEEEESSTSSS--------ST------TTHH
T ss_pred EEEeCCcccc---cchhhhhc--------------cccccceeeeecCCeEEEECCCCcc--------cc------cChh
Confidence 9999999932 12221100 0145666777788899888863322 00 0011
Q ss_pred HHHHHHhcCCCCCCCCCCCccccCCCCCcccccCCCcEEEecCCCCcceEEeCCeEEEcCCCCCC-----CcEEEEEECC
Q 009713 445 HLVATITHQSHLCPLPLTVQPIIWNYDHSLHLYPTPHAIVLADKSEQKAFKYTGITCFNPGSFSS-----DSTFVAYRPC 519 (528)
Q Consensus 445 ~l~ktiL~Q~hL~Pl~~~~~pi~w~~d~~L~L~p~Pdvlil~d~~~~f~~~y~gc~~vNpGsf~~-----~~sf~~y~p~ 519 (528)
. +.. +....-+++++.||.|.++....+|+.++|||++.. ..+|++++..
T Consensus 100 ~-~~~------------------------~~~~~~~~~~~~GH~H~~~~~~~~~~~~~~~Gs~~~~~~~~~~~~~i~~~~ 154 (156)
T PF12850_consen 100 E-LRE------------------------ILSRENVDLVLHGHTHRPQVFKIGGIHVINPGSIGGPRHGDQSGYAILDIE 154 (156)
T ss_dssp H-HHH------------------------HHHHTTSSEEEESSSSSEEEEEETTEEEEEE-GSSS-SSSSSEEEEEEEET
T ss_pred h-hhh------------------------hhcccCCCEEEcCCcccceEEEECCEEEEECCcCCCCCCCCCCEEEEEEEe
Confidence 1 111 112455799999999999998899999999999942 5689998865
Q ss_pred CC
Q 009713 520 TQ 521 (528)
Q Consensus 520 ~~ 521 (528)
++
T Consensus 155 ~~ 156 (156)
T PF12850_consen 155 DK 156 (156)
T ss_dssp TT
T ss_pred cC
Confidence 53
No 20
>TIGR00040 yfcE phosphoesterase, MJ0936 family. Members of this largely uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11, and a family of uncharacterized archaeal putative phosphoesterases described by TIGR00024. In this family, the His residue in GNHD portion of the motif is not conserved. The member MJ0936, one of two from Methanococcus jannaschii, was shown (PubMed:15128743) to act on model phosphodiesterase substrates; a divalent cation was required.
Probab=98.41 E-value=2e-05 Score=73.02 Aligned_cols=150 Identities=15% Similarity=0.186 Sum_probs=94.2
Q ss_pred eEEEEeCCccCcHhHHHHHHHHHhcccCCCCCCeEEEEEccCCCCCCCCCCcchhHHHHHHHHHHHHHHcCCCCCCceeE
Q 009713 285 MFVILSDIWLDNEEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHSRF 364 (528)
Q Consensus 285 ~~v~lSdv~ld~~~~le~L~~ll~~~~~~~~~P~~~Vl~G~F~s~~~~~~~~~~~~~~~~f~~la~~l~~~p~l~~~~~~ 364 (528)
+++++||+|.... .++.+.+++.. . ..|+.+|++||+++. ++.+.+.+. ...+
T Consensus 2 ~i~viSD~H~~~~-~~~~~~~~~~~-~---~~~d~ii~~GD~~~~-----------------~~~~~l~~~-----~~~~ 54 (158)
T TIGR00040 2 KILVISDTHGPLR-ATELPVELFNL-E---SNVDLVIHAGDLTSP-----------------FVLKEFEDL-----AAKV 54 (158)
T ss_pred EEEEEecccCCcc-hhHhHHHHHhh-c---cCCCEEEEcCCCCCH-----------------HHHHHHHHh-----CCce
Confidence 4789999996543 33444454442 1 158999999998831 111222221 2368
Q ss_pred EEecCCCCCCCCCCCCCCCCchhhHHHHhhhCCceEEecCCeEEEEccEEEEEEehHHHHHHhhcccCCCCCCCCCChHH
Q 009713 365 LFIPGPDDAGPSTVLPRCALPKYLTEELQKYIPNAIFSSNPCRIKFYTQEIVFFRQDLLYRMRRSCLIPPSREETDDPFE 444 (528)
Q Consensus 365 v~VPG~~Dp~~~~~lPqpplp~~~~~~l~~~~~n~~~~sNPcri~~~~~eIvi~rdDl~~~l~r~~i~~p~~~~~~d~~~ 444 (528)
+.|+||+|-.. ..+| . -..+.+.|.+|+++|... ..|.. + .+
T Consensus 55 ~~V~GN~D~~~-~~~~-----------------~------~~~~~~~g~~i~l~Hg~~---------~~~~~----~-~~ 96 (158)
T TIGR00040 55 IAVRGNNDGER-DELP-----------------E------EEIFEAEGIDFGLVHGDL---------VYPRG----D-LL 96 (158)
T ss_pred EEEccCCCchh-hhCC-----------------c------ceEEEECCEEEEEEeCcc---------cccCC----C-HH
Confidence 99999999741 1111 1 135778899999999764 11211 1 11
Q ss_pred HHHHHHhcCCCCCCCCCCCccccCCCCCcccccCCCcEEEecCCCCcceEEeCCeEEEcCCCCC---C--CcEEEEEECC
Q 009713 445 HLVATITHQSHLCPLPLTVQPIIWNYDHSLHLYPTPHAIVLADKSEQKAFKYTGITCFNPGSFS---S--DSTFVAYRPC 519 (528)
Q Consensus 445 ~l~ktiL~Q~hL~Pl~~~~~pi~w~~d~~L~L~p~Pdvlil~d~~~~f~~~y~gc~~vNpGsf~---~--~~sf~~y~p~ 519 (528)
..+.+. ...-.++++.||+|.++...++|++++|||+.. . ..+|+.++..
T Consensus 97 -~l~~~~------------------------~~~~~d~vi~GHtH~~~~~~~~~~~~iNpGs~~~~~~~~~~~~~il~~~ 151 (158)
T TIGR00040 97 -VLEYLA------------------------KELGVDVLIFGHTHIPVAEELRGILLINPGSLTGPRNGNTPSYAILDVD 151 (158)
T ss_pred -HHHHHH------------------------hccCCCEEEECCCCCCccEEECCEEEEECCccccccCCCCCeEEEEEec
Confidence 111110 112338999999999998899999999999984 2 2489998877
Q ss_pred CCeEE
Q 009713 520 TQEVE 524 (528)
Q Consensus 520 ~~~~e 524 (528)
..+++
T Consensus 152 ~~~~~ 156 (158)
T TIGR00040 152 KDKVT 156 (158)
T ss_pred CCeEE
Confidence 76654
No 21
>COG0622 Predicted phosphoesterase [General function prediction only]
Probab=98.35 E-value=1.5e-05 Score=75.31 Aligned_cols=155 Identities=16% Similarity=0.174 Sum_probs=103.3
Q ss_pred eEEEEeCCccCcHhHHHHHHHHHhcccCCCCCCeEEEEEccCCCCCCCCCCcchhHHHHHHHHHHHHHHcCCCCCCceeE
Q 009713 285 MFVILSDIWLDNEEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHSRF 364 (528)
Q Consensus 285 ~~v~lSdv~ld~~~~le~L~~ll~~~~~~~~~P~~~Vl~G~F~s~~~~~~~~~~~~~~~~f~~la~~l~~~p~l~~~~~~ 364 (528)
+|.++||.|...... ++..+++.. ..++++|.+||+++... ...+... -..++
T Consensus 3 ~ilviSDtH~~~~~~-~~~~~~~~~-----~~~d~vih~GD~~~~~~------~~~l~~~---------------~~~~i 55 (172)
T COG0622 3 KILVISDTHGPLRAI-EKALKIFNL-----EKVDAVIHAGDSTSPFT------LDALEGG---------------LAAKL 55 (172)
T ss_pred EEEEEeccCCChhhh-hHHHHHhhh-----cCCCEEEECCCcCCccc------hHHhhcc---------------cccce
Confidence 578999999888732 333333321 26899999999996421 1111100 13689
Q ss_pred EEecCCCCCCCCCCCCCCCCchhhHHHHhhhCCceEEecCCeEEEEccEEEEEEehHHHHHHhhcccCCCCCCCCCChHH
Q 009713 365 LFIPGPDDAGPSTVLPRCALPKYLTEELQKYIPNAIFSSNPCRIKFYTQEIVFFRQDLLYRMRRSCLIPPSREETDDPFE 444 (528)
Q Consensus 365 v~VPG~~Dp~~~~~lPqpplp~~~~~~l~~~~~n~~~~sNPcri~~~~~eIvi~rdDl~~~l~r~~i~~p~~~~~~d~~~ 444 (528)
+.|=||+|-.... ..+ +....+.+.|.+|.++|..... .+ .. ....+
T Consensus 56 ~~V~GN~D~~~~~----~~~------------------p~~~~~~~~g~ki~l~HGh~~~-~~-~~---------~~~l~ 102 (172)
T COG0622 56 IAVRGNCDGEVDQ----EEL------------------PEELVLEVGGVKIFLTHGHLYF-VK-TD---------LSLLE 102 (172)
T ss_pred EEEEccCCCcccc----ccC------------------ChhHeEEECCEEEEEECCCccc-cc-cC---------HHHHH
Confidence 9999999975311 111 2345678899999999986544 11 11 01223
Q ss_pred HHHHHHhcCCCCCCCCCCCccccCCCCCcccccCCCcEEEecCCCCcceEEeCCeEEEcCCCCC--CCc---EEEEEECC
Q 009713 445 HLVATITHQSHLCPLPLTVQPIIWNYDHSLHLYPTPHAIVLADKSEQKAFKYTGITCFNPGSFS--SDS---TFVAYRPC 519 (528)
Q Consensus 445 ~l~ktiL~Q~hL~Pl~~~~~pi~w~~d~~L~L~p~Pdvlil~d~~~~f~~~y~gc~~vNpGsf~--~~~---sf~~y~p~ 519 (528)
.+++... -|++|-||+|.+..-+..|+.+|||||.. .++ ||+..+..
T Consensus 103 ~la~~~~----------------------------~Dvli~GHTH~p~~~~~~~i~~vNPGS~s~pr~~~~~sy~il~~~ 154 (172)
T COG0622 103 YLAKELG----------------------------ADVLIFGHTHKPVAEKVGGILLVNPGSVSGPRGGNPASYAILDVD 154 (172)
T ss_pred HHHHhcC----------------------------CCEEEECCCCcccEEEECCEEEEcCCCcCCCCCCCCcEEEEEEcC
Confidence 3333311 59999999999999999999999999995 222 89999999
Q ss_pred CCeEEecc
Q 009713 520 TQEVEFSA 527 (528)
Q Consensus 520 ~~~~e~~~ 527 (528)
..+++...
T Consensus 155 ~~~~~~~~ 162 (172)
T COG0622 155 NLEVEVLF 162 (172)
T ss_pred CCEEEEEE
Confidence 98887653
No 22
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosa
Probab=98.16 E-value=5.1e-05 Score=74.72 Aligned_cols=75 Identities=23% Similarity=0.438 Sum_probs=52.9
Q ss_pred eEEEEeCCccCcH--------hHHHHHHHHHhcccCCCCCCeEEEEEccCCCCCCCCCCcchhHHHHHHHHHHHHHHcCC
Q 009713 285 MFVILSDIWLDNE--------EVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHP 356 (528)
Q Consensus 285 ~~v~lSdv~ld~~--------~~le~L~~ll~~~~~~~~~P~~~Vl~G~F~s~~~~~~~~~~~~~~~~f~~la~~l~~~p 356 (528)
+|+++||+|++.. ...+.|+++++.+......|+.+|++||.++... ..+ |+.+.+.+.+.
T Consensus 1 r~~~iSDlH~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~d~vi~~GDl~~~~~------~~~----~~~~~~~l~~~- 69 (240)
T cd07402 1 LLAQISDLHLRADGEGALLGVDTAASLEAVLAHINALHPRPDLVLVTGDLTDDGS------PES----YERLRELLAAL- 69 (240)
T ss_pred CEEEEeCCccCCCCcceecCcCHHHHHHHHHHHHHhcCCCCCEEEECccCCCCCC------HHH----HHHHHHHHhhc-
Confidence 4789999999853 3456788888877653236999999999997521 122 33444455432
Q ss_pred CCCCceeEEEecCCCCCC
Q 009713 357 RLKEHSRFLFIPGPDDAG 374 (528)
Q Consensus 357 ~l~~~~~~v~VPG~~Dp~ 374 (528)
.+++++||||||..
T Consensus 70 ----~~p~~~v~GNHD~~ 83 (240)
T cd07402 70 ----PIPVYLLPGNHDDR 83 (240)
T ss_pred ----CCCEEEeCCCCCCH
Confidence 47899999999974
No 23
>PHA02546 47 endonuclease subunit; Provisional
Probab=98.08 E-value=3.6e-05 Score=80.58 Aligned_cols=117 Identities=10% Similarity=0.113 Sum_probs=72.1
Q ss_pred eEEEEeCCccCcHh--------HHHHHHHHHhcccCCCCCCeEEEEEccCCCCCCCCCCcchhHHHHHHHH-HHHHHHcC
Q 009713 285 MFVILSDIWLDNEE--------VMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGK-LGQMIAAH 355 (528)
Q Consensus 285 ~~v~lSdv~ld~~~--------~le~L~~ll~~~~~~~~~P~~~Vl~G~F~s~~~~~~~~~~~~~~~~f~~-la~~l~~~ 355 (528)
+++.+||.|++... ..+.|.++++.... ..|+++|++||+.+...... ...+. .+.. +...|.+
T Consensus 2 KilhiSD~HLG~~~~~~~~~~~~~~~l~~ii~~a~~--~~vD~VliaGDlfD~~~~~~---~~~~~-~~~~~l~~~L~~- 74 (340)
T PHA02546 2 KILLIGDQHLGVRKDDPWFQNYQLKFIKQAIEYSKA--HGITTWIQLGDTFDVRKAIT---QNTMN-FVREKIFDLLKE- 74 (340)
T ss_pred eEEEEeeecCCCcCCChhhHHHHHHHHHHHHHHHHH--cCCCEEEECCcccCCCCCCC---HHHHH-HHHHHHHHHHHH-
Confidence 57899999998542 22344455443333 37999999999998742211 11111 1111 3333432
Q ss_pred CCCCCceeEEEecCCCCCCCCCCCCCCCCchhhHHHHhhhCCceEEecCCeEEEEccEEEEE
Q 009713 356 PRLKEHSRFLFIPGPDDAGPSTVLPRCALPKYLTEELQKYIPNAIFSSNPCRIKFYTQEIVF 417 (528)
Q Consensus 356 p~l~~~~~~v~VPG~~Dp~~~~~lPqpplp~~~~~~l~~~~~n~~~~sNPcri~~~~~eIvi 417 (528)
..+++++||||||..... ..++.-+.. +.+..+|+++...|..+.+.|..+.+
T Consensus 75 ----~gi~v~~I~GNHD~~~~~-~~~~~~~~~----ll~~~~~v~v~~~~~~v~i~g~~i~~ 127 (340)
T PHA02546 75 ----AGITLHVLVGNHDMYYKN-TIRPNAPTE----LLGQYDNITVIDEPTTVDFDGCSIDL 127 (340)
T ss_pred ----CCCeEEEEccCCCccccc-ccccCchHH----HHhhCCCEEEeCCceEEEECCEEEEE
Confidence 257999999999985322 222222222 22356899999999999999988765
No 24
>PF14582 Metallophos_3: Metallophosphoesterase, calcineurin superfamily; PDB: 1UF3_B 2YVT_A.
Probab=98.06 E-value=2.7e-05 Score=75.57 Aligned_cols=51 Identities=18% Similarity=0.249 Sum_probs=37.1
Q ss_pred ccCCCcEEEecCCCCcc-eEEeCCeEEEcCCCCCCCcEEEEEECCCCeEEecc
Q 009713 476 LYPTPHAIVLADKSEQK-AFKYTGITCFNPGSFSSDSTFVAYRPCTQEVEFSA 527 (528)
Q Consensus 476 L~p~Pdvlil~d~~~~f-~~~y~gc~~vNpGsf~~~~sf~~y~p~~~~~e~~~ 527 (528)
-.--|++.++|+.+..- .-....+.|||||+|+. |.|++.+...+++++-.
T Consensus 203 k~~~P~ivl~Ghihe~~~~e~lG~TlVVNPGsL~~-G~yAvI~l~~~~v~~g~ 254 (255)
T PF14582_consen 203 KTYNPDIVLCGHIHESHGKESLGKTLVVNPGSLAE-GDYAVIDLEQDKVEFGN 254 (255)
T ss_dssp HHH--SEEEE-SSS-EE--EEETTEEEEE--BGGG-TEEEEEETTTTEEEEEE
T ss_pred HhcCCcEEEecccccchhhHHhCCEEEecCccccc-CceeEEEecccccccCC
Confidence 34578999999998554 45778899999999976 89999999999999754
No 25
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=98.03 E-value=0.00059 Score=67.29 Aligned_cols=46 Identities=13% Similarity=0.226 Sum_probs=34.9
Q ss_pred CCCcEEEecCCCCcceEEeCCeEEEcCCCCCCCcEEEEEECCCCeEEe
Q 009713 478 PTPHAIVLADKSEQKAFKYTGITCFNPGSFSSDSTFVAYRPCTQEVEF 525 (528)
Q Consensus 478 p~Pdvlil~d~~~~f~~~y~gc~~vNpGsf~~~~sf~~y~p~~~~~e~ 525 (528)
--|.+.++||.+.-. -+..++.|||||++.. |.|+.++-...++|+
T Consensus 178 ~~P~l~i~GHih~~~-~~~g~t~vvNpg~~~~-g~~a~i~~~~~~v~~ 223 (224)
T cd07388 178 HNPLVVLVGGKGQKH-ELLGASWVVVPGDLSE-GRYALLDLRARKLET 223 (224)
T ss_pred hCCCEEEEcCCceeE-EEeCCEEEECCCcccC-CcEEEEEecCcceee
Confidence 458999999888222 3678899999999754 578888877767664
No 26
>cd07400 MPP_YydB Bacillus subtilis YydB and related proteins, metallophosphatase domain. YydB (BSU40220) is an uncharacterized Bacillus subtilis protein that belongs to the following Bacillus subtilis gene cluster yydB-yydC-yydD-yydG-yydH-yydI-yydJ. YydB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productiv
Probab=97.92 E-value=5.2e-05 Score=68.76 Aligned_cols=74 Identities=23% Similarity=0.376 Sum_probs=46.2
Q ss_pred EEEEeCCccCcHhHHHH------HHHHHhcccCCCCCCeEEEEEccCCCCCCCCCCcchhHHHHHHHHHHHHHHcCCCCC
Q 009713 286 FVILSDIWLDNEEVMGK------LEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLK 359 (528)
Q Consensus 286 ~v~lSdv~ld~~~~le~------L~~ll~~~~~~~~~P~~~Vl~G~F~s~~~~~~~~~~~~~~~~f~~la~~l~~~p~l~ 359 (528)
|+.+||+|++....... |..++..... ..|+.+|++||+++... ..+ ++.+.+++.++....
T Consensus 1 il~isD~Hl~~~~~~~~~~~~~~l~~~~~~~~~--~~~d~vi~~GDl~~~~~------~~~----~~~~~~~~~~l~~~~ 68 (144)
T cd07400 1 ILHLSDLHFGPERKPELLALLSLLDRLLAEIKA--LDPDLVVITGDLTQRGL------PEE----FEEAREFLDALPAPL 68 (144)
T ss_pred CeEeCccCCCCCcchhHHHHHHHHHHHHHHHhc--cCCCEEEECCCCCCCCC------HHH----HHHHHHHHHHccccC
Confidence 46789999987643211 2334544443 37999999999997532 122 334444454432211
Q ss_pred CceeEEEecCCCCC
Q 009713 360 EHSRFLFIPGPDDA 373 (528)
Q Consensus 360 ~~~~~v~VPG~~Dp 373 (528)
.++.+||||||.
T Consensus 69 --~~~~~v~GNHD~ 80 (144)
T cd07400 69 --EPVLVVPGNHDV 80 (144)
T ss_pred --CcEEEeCCCCeE
Confidence 589999999997
No 27
>cd07379 MPP_239FB Homo sapiens 239FB and related proteins, metallophosphatase domain. 239FB (Fetal brain protein 239) is thought to play a role in central nervous system development, but its specific role in unknown. 239FB is expressed predominantly in human fetal brain from a gene located in the chromosome 11p13 region associated with the mental retardation component of the WAGR (Wilms tumor, Aniridia, Genitourinary anomalies, Mental retardation) syndrome. Orthologous brp-like (brain protein 239-like) proteins have been identified in the invertebrate amphioxus group and in vertebrates. 239FB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzyme
Probab=97.82 E-value=0.00032 Score=63.16 Aligned_cols=63 Identities=17% Similarity=0.292 Sum_probs=39.8
Q ss_pred EEEEeCCccCcHhHHHHHHHHHhcccCCCCCCeEEEEEccCCCCCCCCCCcchhHHHHHHHHHHHHHHcCCCCCCceeEE
Q 009713 286 FVILSDIWLDNEEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHSRFL 365 (528)
Q Consensus 286 ~v~lSdv~ld~~~~le~L~~ll~~~~~~~~~P~~~Vl~G~F~s~~~~~~~~~~~~~~~~f~~la~~l~~~p~l~~~~~~v 365 (528)
|+++||+|.+-. .... ..|+++|++||+++... ..+ ++.+.+.+.+.+ ...++
T Consensus 2 i~~isD~H~~~~-----------~~~~--~~~D~vi~~GD~~~~~~------~~~----~~~~~~~l~~~~----~~~~~ 54 (135)
T cd07379 2 FVCISDTHSRHR-----------TISI--PDGDVLIHAGDLTERGT------LEE----LQKFLDWLKSLP----HPHKI 54 (135)
T ss_pred EEEEeCCCCCCC-----------cCcC--CCCCEEEECCCCCCCCC------HHH----HHHHHHHHHhCC----CCeEE
Confidence 788999996644 1121 36999999999986421 122 234444554432 22467
Q ss_pred EecCCCCCCC
Q 009713 366 FIPGPDDAGP 375 (528)
Q Consensus 366 ~VPG~~Dp~~ 375 (528)
+||||||...
T Consensus 55 ~v~GNHD~~~ 64 (135)
T cd07379 55 VIAGNHDLTL 64 (135)
T ss_pred EEECCCCCcC
Confidence 8999999753
No 28
>cd07392 MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and related proteins, metallophosphatase domain. PAE1087 is an uncharacterized Pyrobaculum aerophilum protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordina
Probab=97.81 E-value=0.00038 Score=65.43 Aligned_cols=27 Identities=22% Similarity=0.299 Sum_probs=23.5
Q ss_pred CCcEEEecCCCCcce-EEeCCeEEEcCC
Q 009713 479 TPHAIVLADKSEQKA-FKYTGITCFNPG 505 (528)
Q Consensus 479 ~Pdvlil~d~~~~f~-~~y~gc~~vNpG 505 (528)
-|.+++.||.|.++. ..+.++.++|||
T Consensus 161 ~~~~~l~GH~H~~~~~~~~~~~~~~n~G 188 (188)
T cd07392 161 QPLLCICGHIHESRGVDKIGNTLVVNPG 188 (188)
T ss_pred CCcEEEEeccccccceeeeCCeEEecCC
Confidence 589999999998874 478899999998
No 29
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=97.76 E-value=6.3e-05 Score=72.87 Aligned_cols=79 Identities=15% Similarity=0.175 Sum_probs=50.3
Q ss_pred eEEEEeCCccCcHh-----------HHHHHHHHHhcccCCCCCCeEEEEEccCCCCCCCCCCcchhHHHHHHHHHHHHHH
Q 009713 285 MFVILSDIWLDNEE-----------VMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIA 353 (528)
Q Consensus 285 ~~v~lSdv~ld~~~-----------~le~L~~ll~~~~~~~~~P~~~Vl~G~F~s~~~~~~~~~~~~~~~~f~~la~~l~ 353 (528)
+|+.+||+|++... .++.|.++++...+. .|+.+|++||+++.... +...+....+.+.++-.
T Consensus 1 ~i~~~sD~Hlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~d~i~~~GD~~~~~~~----~~~~~~~~~~~~~~~~~ 74 (223)
T cd00840 1 RFLHTADWHLGKPLKGLSRDRRREDQFEAFEEIVELAIEE--KVDFVLIAGDLFDSNNP----SPEALELLIEALRRLKE 74 (223)
T ss_pred CeEEeccccCCccccCcCcccchHHHHHHHHHHHHHHHhc--CCCEEEECCcccCCCCC----CHHHHHHHHHHHHHHHH
Confidence 47889999998653 234566776655443 69999999999986421 11223222222222211
Q ss_pred cCCCCCCceeEEEecCCCCCCC
Q 009713 354 AHPRLKEHSRFLFIPGPDDAGP 375 (528)
Q Consensus 354 ~~p~l~~~~~~v~VPG~~Dp~~ 375 (528)
..+.++++|||||...
T Consensus 75 ------~~~~v~~~~GNHD~~~ 90 (223)
T cd00840 75 ------AGIPVFIIAGNHDSPS 90 (223)
T ss_pred ------CCCCEEEecCCCCCcc
Confidence 3578999999999864
No 30
>COG2129 Predicted phosphoesterases, related to the Icc protein [General function prediction only]
Probab=97.69 E-value=0.0029 Score=61.74 Aligned_cols=201 Identities=15% Similarity=0.105 Sum_probs=103.8
Q ss_pred eEEEEeCCccCcHhHHHHHHHHHhcccCCCCCCeEEEEEccCCCCCCCCCCcchhHHHHHHHHHHHHHHcCCCCCCceeE
Q 009713 285 MFVILSDIWLDNEEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHSRF 364 (528)
Q Consensus 285 ~~v~lSdv~ld~~~~le~L~~ll~~~~~~~~~P~~~Vl~G~F~s~~~~~~~~~~~~~~~~f~~la~~l~~~p~l~~~~~~ 364 (528)
++++++|+|-+. ..++++......+ +++++|++||++.--.. ....-.+.- .++.+.. ...++
T Consensus 5 kil~vtDlHg~~-~~~~k~~~~~~~~-----~~D~lviaGDlt~~~~~----~~~~~~~~~-~~e~l~~------~~~~v 67 (226)
T COG2129 5 KILAVTDLHGSE-DSLKKLLNAAADI-----RADLLVIAGDLTYFHFG----PKEVAEELN-KLEALKE------LGIPV 67 (226)
T ss_pred eEEEEeccccch-HHHHHHHHHHhhc-----cCCEEEEecceehhhcC----chHHHHhhh-HHHHHHh------cCCeE
Confidence 578889999544 3445544444432 68899999999821111 011111110 0222221 35799
Q ss_pred EEecCCCCCCCCCCCCCCCCchhhHHHHhhhCCceEEecCCeEEEEccEEEEEEehHHHHHHhhcccCCCCCCCCCChHH
Q 009713 365 LFIPGPDDAGPSTVLPRCALPKYLTEELQKYIPNAIFSSNPCRIKFYTQEIVFFRQDLLYRMRRSCLIPPSREETDDPFE 444 (528)
Q Consensus 365 v~VPG~~Dp~~~~~lPqpplp~~~~~~l~~~~~n~~~~sNPcri~~~~~eIvi~rdDl~~~l~r~~i~~p~~~~~~d~~~ 444 (528)
+.||||.||-. ....++..-.+++ + -.+++.+..++-+-. ++--..|++. +-+.+...
T Consensus 68 ~avpGNcD~~~------------v~~~l~~~~~~v~---~-~v~~i~~~~~~G~Gg--sn~tp~nt~~----e~~E~~I~ 125 (226)
T COG2129 68 LAVPGNCDPPE------------VIDVLKNAGVNVH---G-RVVEIGGYGFVGFGG--SNPTPFNTPR----EFSEDEIY 125 (226)
T ss_pred EEEcCCCChHH------------HHHHHHhcccccc---c-ceEEecCcEEEEecc--cCCCCCCCcc----ccCHHHHH
Confidence 99999999842 1222222111222 2 445555555544210 1111111110 00112333
Q ss_pred HHHHHHhcCC---------CCCCCCCCCccccCCCCCc-------ccccCCCcEEEecCCCCc-ceEEeCCeEEEcCCCC
Q 009713 445 HLVATITHQS---------HLCPLPLTVQPIIWNYDHS-------LHLYPTPHAIVLADKSEQ-KAFKYTGITCFNPGSF 507 (528)
Q Consensus 445 ~l~ktiL~Q~---------hL~Pl~~~~~pi~w~~d~~-------L~L~p~Pdvlil~d~~~~-f~~~y~gc~~vNpGsf 507 (528)
...+.+++.. |--|. +...-+.-.|.|. +.-.-.|-+-+.||.|+. ..-...++.+||||++
T Consensus 126 s~l~~~v~~~~~~~~Il~~HaPP~-gt~~d~~~g~~hvGS~~vr~~ieefqP~l~i~GHIHEs~G~d~iG~TivVNPG~~ 204 (226)
T COG2129 126 SKLKSLVKKADNPVNILLTHAPPY-GTLLDTPSGYVHVGSKAVRKLIEEFQPLLGLHGHIHESRGIDKIGNTIVVNPGPL 204 (226)
T ss_pred HHHHHHHhcccCcceEEEecCCCC-CccccCCCCccccchHHHHHHHHHhCCceEEEeeecccccccccCCeEEECCCCc
Confidence 3444444444 33333 2221121223442 122356788999999964 3346788999999994
Q ss_pred CCCcEEEEEECCCCeEEec
Q 009713 508 SSDSTFVAYRPCTQEVEFS 526 (528)
Q Consensus 508 ~~~~sf~~y~p~~~~~e~~ 526 (528)
..+.|+.++.....++.-
T Consensus 205 -~~g~yA~i~l~~~~Vk~~ 222 (226)
T COG2129 205 -GEGRYALIELEKEVVKLE 222 (226)
T ss_pred -cCceEEEEEecCcEEEEE
Confidence 678999999888777654
No 31
>cd08165 MPP_MPPE1 human MPPE1 and related proteins, metallophosphatase domain. MPPE1 is a functionally uncharacterized metallophosphatase domain-containing protein. The MPPE1 gene is located on chromosome 18 and is a candidate susceptibility gene for Bipolar disorder. MPPE1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to
Probab=97.49 E-value=0.00063 Score=63.26 Aligned_cols=67 Identities=13% Similarity=0.241 Sum_probs=42.7
Q ss_pred CCCeEEEEEccCCCCCCCCCCcchhHHHHHHHHHHHHHHcCCCCCCceeEEEecCCCCCCCCCCCCCCCCchhhHHHHh
Q 009713 315 VVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHSRFLFIPGPDDAGPSTVLPRCALPKYLTEELQ 393 (528)
Q Consensus 315 ~~P~~~Vl~G~F~s~~~~~~~~~~~~~~~~f~~la~~l~~~p~l~~~~~~v~VPG~~Dp~~~~~lPqpplp~~~~~~l~ 393 (528)
..|+.+|++||+++.... .....+.+.++++..++...+ ..++++||||||.+... +++.....++.
T Consensus 37 ~~pd~vv~~GDl~~~~~~---~~~~~~~~~~~~~~~~~~~~~----~~~i~~v~GNHD~~~~~-----~~~~~~~~~~~ 103 (156)
T cd08165 37 LQPDVVFVLGDLFDEGKW---STDEEWEDYVERFKKMFGHPP----DLPLHVVVGNHDIGFHY-----EMTTYKLERFE 103 (156)
T ss_pred cCCCEEEECCCCCCCCcc---CCHHHHHHHHHHHHHHhccCC----CCeEEEEcCCCCcCCCC-----ccCHHHHHHHH
Confidence 379999999999975321 122445555666666554322 46899999999997522 33444444554
No 32
>cd07385 MPP_YkuE_C Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain. YkuE is an uncharacterized Bacillus subtilis protein with a C-terminal metallophosphatase domain and an N-terminal twin-arginine (RR) motif. An RR-signal peptide derived from the Bacillus subtilis YkuE protein can direct Tat-dependent secretion of agarase in Streptomyces lividans. This is an indication that YkuE is transported by the Bacillus subtilis Tat (Twin-arginine translocation) pathway machinery. YkuE belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-dia
Probab=97.35 E-value=0.0014 Score=63.83 Aligned_cols=110 Identities=18% Similarity=0.183 Sum_probs=69.5
Q ss_pred eEEEEeCCccCcHhHHHHHHHHHhcccCCCCCCeEEEEEccCCCCCCCCCCcchhHHHHHHHHHHHHHHcCCCCCCceeE
Q 009713 285 MFVILSDIWLDNEEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHSRF 364 (528)
Q Consensus 285 ~~v~lSdv~ld~~~~le~L~~ll~~~~~~~~~P~~~Vl~G~F~s~~~~~~~~~~~~~~~~f~~la~~l~~~p~l~~~~~~ 364 (528)
+++++||+|++.....+.++++++...+. .|+.++++||+++..... . +.+.+++.+ +.....+
T Consensus 3 ~i~~~sDlH~~~~~~~~~~~~~~~~~~~~--~~d~vl~~GD~~~~~~~~-----~------~~~~~~l~~---l~~~~~v 66 (223)
T cd07385 3 RIAHLSDLHLGPFVSRERLERLVEKINAL--KPDLVVLTGDLVDGSVDV-----L------ELLLELLKK---LKAPLGV 66 (223)
T ss_pred EEEEEeecCCCccCCHHHHHHHHHHHhcc--CCCEEEEcCcccCCcchh-----h------HHHHHHHhc---cCCCCCE
Confidence 68899999998765556677777766543 699999999999864211 1 233344443 3345789
Q ss_pred EEecCCCCCCCCCCCCCCCCchhhHHHHhhhCCceEEecCCe-EEEEccEEEEEEe
Q 009713 365 LFIPGPDDAGPSTVLPRCALPKYLTEELQKYIPNAIFSSNPC-RIKFYTQEIVFFR 419 (528)
Q Consensus 365 v~VPG~~Dp~~~~~lPqpplp~~~~~~l~~~~~n~~~~sNPc-ri~~~~~eIvi~r 419 (528)
+++|||||..... .. .+.+.++ -.++++..|.. .+...+..+.++-
T Consensus 67 ~~v~GNHD~~~~~-~~------~~~~~l~--~~~v~~L~~~~~~~~~~~~~i~i~G 113 (223)
T cd07385 67 YAVLGNHDYYSGD-EE------NWIEALE--SAGITVLRNESVEISVGGATIGIAG 113 (223)
T ss_pred EEECCCcccccCc-hH------HHHHHHH--HcCCEEeecCcEEeccCCeEEEEEe
Confidence 9999999986421 10 0122232 13566666664 4556677777764
No 33
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.32 E-value=0.00088 Score=67.28 Aligned_cols=102 Identities=14% Similarity=0.098 Sum_probs=59.7
Q ss_pred eEEEEeCCccCcHh--------HHHHHHHHHhcccCCCCCCeEEEEEccCCCCCCCCCCcchhHHHHHHHHHHHHHHcCC
Q 009713 285 MFVILSDIWLDNEE--------VMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHP 356 (528)
Q Consensus 285 ~~v~lSdv~ld~~~--------~le~L~~ll~~~~~~~~~P~~~Vl~G~F~s~~~~~~~~~~~~~~~~f~~la~~l~~~p 356 (528)
+++.+||+|++... ....|..+++.... ..|+++|++||+.+..... ..-.+.|.++...|.+
T Consensus 2 kilh~SD~Hlg~~~~~~~~~~~~~~~l~~l~~~~~~--~~~D~lli~GDi~d~~~p~-----~~~~~~~~~~l~~l~~-- 72 (253)
T TIGR00619 2 RILHTSDWHLGKTLEGVSRLAEQKAFLDDLLEFAKA--EQIDALLVAGDVFDTANPP-----AEAQELFNAFFRNLSD-- 72 (253)
T ss_pred EEEEEhhhcCCCccCCCChHHHHHHHHHHHHHHHHH--cCCCEEEECCccCCCCCCC-----HHHHHHHHHHHHHHHh--
Confidence 57899999998742 22345555554333 3799999999999874321 1112233333222322
Q ss_pred CCCCceeEEEecCCCCCCCCCCCCCCCCchhhHHHHhhhCCceEEecCCeE
Q 009713 357 RLKEHSRFLFIPGPDDAGPSTVLPRCALPKYLTEELQKYIPNAIFSSNPCR 407 (528)
Q Consensus 357 ~l~~~~~~v~VPG~~Dp~~~~~lPqpplp~~~~~~l~~~~~n~~~~sNPcr 407 (528)
. ..+++++|+||||...+.-.+ ..+ + ...|++..++|..
T Consensus 73 -~-~~i~v~~i~GNHD~~~~~~~~-----~~l---~--~~~~v~i~~~~~~ 111 (253)
T TIGR00619 73 -A-NPIPIVVISGNHDSAQRLSAA-----KKL---L--IELGVFVVGFPVG 111 (253)
T ss_pred -c-CCceEEEEccCCCChhhcccc-----hhH---H--HhCCeEEEEeccc
Confidence 1 127899999999986422222 111 1 2368888887764
No 34
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=97.32 E-value=0.00066 Score=68.82 Aligned_cols=77 Identities=17% Similarity=0.253 Sum_probs=53.6
Q ss_pred CCeEEEEeCCccCc--------HhHHHHHHHHHhcccCCCCCCeEEEEEccCCCCCCCCCCcchhHHHHHHHHHHHHHHc
Q 009713 283 NDMFVILSDIWLDN--------EEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAA 354 (528)
Q Consensus 283 ~~~~v~lSdv~ld~--------~~~le~L~~ll~~~~~~~~~P~~~Vl~G~F~s~~~~~~~~~~~~~~~~f~~la~~l~~ 354 (528)
..+|+.+||+||.. ..+.+.|+++++........|+++|++||+++.. +..+ |+.+.+.+++
T Consensus 14 ~~~i~~iSD~Hl~~~~~~~~~~~~~~~~l~~~i~~i~~~~~~~D~vvitGDl~~~~------~~~~----~~~~~~~l~~ 83 (275)
T PRK11148 14 RVRILQITDTHLFADEHETLLGVNTWESYQAVLEAIRAQQHEFDLIVATGDLAQDH------SSEA----YQHFAEGIAP 83 (275)
T ss_pred CEEEEEEcCcccCCCCCCceeccCHHHHHHHHHHHHHhhCCCCCEEEECCCCCCCC------CHHH----HHHHHHHHhh
Confidence 35788999999843 1356778888887755434699999999999742 1233 3444455554
Q ss_pred CCCCCCceeEEEecCCCCCC
Q 009713 355 HPRLKEHSRFLFIPGPDDAG 374 (528)
Q Consensus 355 ~p~l~~~~~~v~VPG~~Dp~ 374 (528)
+ ..++.+||||||..
T Consensus 84 l-----~~Pv~~v~GNHD~~ 98 (275)
T PRK11148 84 L-----RKPCVWLPGNHDFQ 98 (275)
T ss_pred c-----CCcEEEeCCCCCCh
Confidence 3 25899999999973
No 35
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=97.27 E-value=0.0016 Score=69.37 Aligned_cols=85 Identities=12% Similarity=0.117 Sum_probs=53.5
Q ss_pred eEEEEeCCccCcH---------hHHHHHHHHHhcccCCCCCCeEEEEEccCCCCCCCCCCcchhHHHHHHHHHHHHHHcC
Q 009713 285 MFVILSDIWLDNE---------EVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAH 355 (528)
Q Consensus 285 ~~v~lSdv~ld~~---------~~le~L~~ll~~~~~~~~~P~~~Vl~G~F~s~~~~~~~~~~~~~~~~f~~la~~l~~~ 355 (528)
+|+-+||.|||.. ...+.|..++....+ ..++++|++||..+... .+......+.+.|.+|..
T Consensus 2 kilHtSD~HLG~~~~~~~~r~~d~~~~f~~~l~~a~~--~~vD~vliAGDlFd~~~-Ps~~a~~~~~~~l~~l~~----- 73 (390)
T COG0420 2 KILHTSDWHLGSKQLNLPSRLEDQKKAFDELLEIAKE--EKVDFVLIAGDLFDTNN-PSPRALKLFLEALRRLKD----- 73 (390)
T ss_pred eeEEecccccchhhccCccchHHHHHHHHHHHHHHHH--ccCCEEEEccccccCCC-CCHHHHHHHHHHHHHhcc-----
Confidence 4778899999932 112334444444443 37899999999998732 222333444444444422
Q ss_pred CCCCCceeEEEecCCCCCCCCCCCCC
Q 009713 356 PRLKEHSRFLFIPGPDDAGPSTVLPR 381 (528)
Q Consensus 356 p~l~~~~~~v~VPG~~Dp~~~~~lPq 381 (528)
.++++++|+||||...+.....
T Consensus 74 ----~~Ipv~~I~GNHD~~~~~~~~~ 95 (390)
T COG0420 74 ----AGIPVVVIAGNHDSPSRLSEAS 95 (390)
T ss_pred ----CCCcEEEecCCCCchhcccccc
Confidence 4689999999999975444443
No 36
>cd07395 MPP_CSTP1 Homo sapiens CSTP1 and related proteins, metallophosphatase domain. CSTP1 (complete S-transactivated protein 1) is an uncharacterized Homo sapiens protein with a metallophosphatase domain, that is transactivated by the complete S protein of hepatitis B virus. CSTP1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is th
Probab=97.22 E-value=0.0012 Score=66.10 Aligned_cols=84 Identities=14% Similarity=0.133 Sum_probs=56.1
Q ss_pred CCeEEEEeCCccCcHhHH------------HHHHHHHhcccCCCCCCeEEEEEccCCCCCCCCCCcchhHHHHHHHHHHH
Q 009713 283 NDMFVILSDIWLDNEEVM------------GKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQ 350 (528)
Q Consensus 283 ~~~~v~lSdv~ld~~~~l------------e~L~~ll~~~~~~~~~P~~~Vl~G~F~s~~~~~~~~~~~~~~~~f~~la~ 350 (528)
+.+|+++||+|++..... ..|+..++...+....|+.+|++||.++..... ....++++.+.+
T Consensus 4 ~~~f~~~sD~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~pd~ii~~GDl~~~~~~~-----~~~~~~~~~~~~ 78 (262)
T cd07395 4 PFYFIQGADPQLGLIKKNLEGGGDEWDEEIKLTEQAVQAINKLNPKPKFVVVCGDLVNAMPGD-----ELRERQVSDLKD 78 (262)
T ss_pred CEEEEEecCCccchhhccccCchhhhhhHHHHHHHHHHHHHhcCCCCCEEEEeCCcCCCCcch-----hhHHHHHHHHHH
Confidence 457899999999853221 346666666554334799999999999763211 112344566666
Q ss_pred HHHcCCCCCCceeEEEecCCCCCC
Q 009713 351 MIAAHPRLKEHSRFLFIPGPDDAG 374 (528)
Q Consensus 351 ~l~~~p~l~~~~~~v~VPG~~Dp~ 374 (528)
.+.+. ...++++++|||||.+
T Consensus 79 ~~~~~---~~~vp~~~i~GNHD~~ 99 (262)
T cd07395 79 VLSLL---DPDIPLVCVCGNHDVG 99 (262)
T ss_pred HHhhc---cCCCcEEEeCCCCCCC
Confidence 66543 3457999999999985
No 37
>cd07396 MPP_Nbla03831 Homo sapiens Nbla03831 and related proteins, metallophosphatase domain. Nbla03831 (also known as LOC56985) is an uncharacterized Homo sapiens protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=97.20 E-value=0.00097 Score=67.34 Aligned_cols=76 Identities=16% Similarity=0.216 Sum_probs=53.9
Q ss_pred eEEEEeCCccCcHh---------HHHHHHHHHhcccCCCCCCeEEEEEccCCCCCCCCCCcchhHHHHHHHHHHHHHHcC
Q 009713 285 MFVILSDIWLDNEE---------VMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAH 355 (528)
Q Consensus 285 ~~v~lSdv~ld~~~---------~le~L~~ll~~~~~~~~~P~~~Vl~G~F~s~~~~~~~~~~~~~~~~f~~la~~l~~~ 355 (528)
+|+++||+|+.++. ..+.|++.++.+.+. .|+.+|++||.++... .. -.+.|+.+.+.+.+.
T Consensus 2 r~~~iSD~H~~~~~~~~~~~~~~~~~~l~~~i~~i~~~--~~d~vv~~GDlv~~~~---~~----~~~~~~~~~~~l~~l 72 (267)
T cd07396 2 RFGIIADIQYADEDDTRPRYYRNSLEKLEEAVEEWNRE--SLDFVVQLGDIIDGDN---AR----AEEALDAVLAILDRL 72 (267)
T ss_pred eEEEEeccccccCCCcccchHHHhHHHHHHHHHHHHcC--CCCEEEECCCeecCCC---ch----HHHHHHHHHHHHHhc
Confidence 58899999987642 456778888877664 5999999999986421 11 223445555555543
Q ss_pred CCCCCceeEEEecCCCCCC
Q 009713 356 PRLKEHSRFLFIPGPDDAG 374 (528)
Q Consensus 356 p~l~~~~~~v~VPG~~Dp~ 374 (528)
.+.+.++|||||..
T Consensus 73 -----~~p~~~v~GNHD~~ 86 (267)
T cd07396 73 -----KGPVHHVLGNHDLY 86 (267)
T ss_pred -----CCCEEEecCccccc
Confidence 26899999999985
No 38
>PRK11340 phosphodiesterase YaeI; Provisional
Probab=97.04 E-value=0.0016 Score=66.02 Aligned_cols=117 Identities=15% Similarity=0.136 Sum_probs=68.5
Q ss_pred CeEEEEeCCccCcHhHHHHHHHHHhcccCCCCCCeEEEEEccCCCCCCCCCCcchhHHHHHHHHHHHHHHcCCCCCCcee
Q 009713 284 DMFVILSDIWLDNEEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHSR 363 (528)
Q Consensus 284 ~~~v~lSdv~ld~~~~le~L~~ll~~~~~~~~~P~~~Vl~G~F~s~~~~~~~~~~~~~~~~f~~la~~l~~~p~l~~~~~ 363 (528)
.+++++||+|++...-.+.+++++...++. .|++++++||+++... ......+. +.|.++. +...
T Consensus 50 ~rI~~lSDlH~~~~~~~~~l~~~v~~i~~~--~pDlVli~GD~~d~~~---~~~~~~~~-------~~L~~L~---~~~p 114 (271)
T PRK11340 50 FKILFLADLHYSRFVPLSLISDAIALGIEQ--KPDLILLGGDYVLFDM---PLNFSAFS-------DVLSPLA---ECAP 114 (271)
T ss_pred cEEEEEcccCCCCcCCHHHHHHHHHHHHhc--CCCEEEEccCcCCCCc---cccHHHHH-------HHHHHHh---hcCC
Confidence 479999999987433345567777665543 7999999999997321 11122222 2232211 2247
Q ss_pred EEEecCCCCCCCCCCCCCCCCchhhHHHHhhhCCceEEecCCe-EEEEccEEEEEEe-hHH
Q 009713 364 FLFIPGPDDAGPSTVLPRCALPKYLTEELQKYIPNAIFSSNPC-RIKFYTQEIVFFR-QDL 422 (528)
Q Consensus 364 ~v~VPG~~Dp~~~~~lPqpplp~~~~~~l~~~~~n~~~~sNPc-ri~~~~~eIvi~r-dDl 422 (528)
+++|+||||-.... .-.+.+.+.+++ .++++..|-. .|...+..|.++- +|.
T Consensus 115 v~~V~GNHD~~~~~-----~~~~~~~~~l~~--~gi~lL~n~~~~i~~~~~~i~i~G~~d~ 168 (271)
T PRK11340 115 TFACFGNHDRPVGT-----EKNHLIGETLKS--AGITVLFNQATVIATPNRQFELVGTGDL 168 (271)
T ss_pred EEEecCCCCcccCc-----cchHHHHHHHHh--cCcEEeeCCeEEEeeCCcEEEEEEecch
Confidence 99999999964211 111223333332 3577776654 6666777775553 554
No 39
>cd07391 MPP_PF1019 Pyrococcus furiosus PF1019 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to PF1019, an uncharacterized Pyrococcus furiosus protein. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for pro
Probab=97.03 E-value=0.0017 Score=61.08 Aligned_cols=75 Identities=23% Similarity=0.381 Sum_probs=44.6
Q ss_pred EEeCCccCcHhHH-------------HHHHHHHhcccCCCCCCeEEEEEccCCCCCCCCCCcchhHHHHHHHHHHHHHHc
Q 009713 288 ILSDIWLDNEEVM-------------GKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAA 354 (528)
Q Consensus 288 ~lSdv~ld~~~~l-------------e~L~~ll~~~~~~~~~P~~~Vl~G~F~s~~~~~~~~~~~~~~~~f~~la~~l~~ 354 (528)
++||+||+....+ +.++.+.+.... ..|+.+|++||+.+..... ... .+..+. ++.
T Consensus 2 ~isDlHlG~~~~~~~~g~~~p~~~~~~~~~~l~~~~~~--~~~d~lii~GDl~~~~~~~---~~~----~~~~~~-~~~- 70 (172)
T cd07391 2 VVADLHLGKEEELRRRGILLPRGQTEDTLERLDRLIEE--YGPERLIILGDLKHSFGGL---SRQ----EFEEVA-FLR- 70 (172)
T ss_pred EeEeeccchHHHHHhcCCcCCcccHHHHHHHHHHHHHh--cCCCEEEEeCccccccccc---CHH----HHHHHH-HHH-
Confidence 6799999876553 223344433333 3699999999999753321 111 111221 111
Q ss_pred CCCCCCceeEEEecCCCCCCC
Q 009713 355 HPRLKEHSRFLFIPGPDDAGP 375 (528)
Q Consensus 355 ~p~l~~~~~~v~VPG~~Dp~~ 375 (528)
.....+++++|+||||...
T Consensus 71 --~~~~~~~v~~i~GNHD~~~ 89 (172)
T cd07391 71 --LLAKDVDVILIRGNHDGGL 89 (172)
T ss_pred --hccCCCeEEEEcccCccch
Confidence 1224679999999999864
No 40
>cd07384 MPP_Cdc1_like Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. This group also contains Saccharomyces cerevisiae TED1 (Trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), which acts together wit
Probab=97.01 E-value=0.0011 Score=62.71 Aligned_cols=58 Identities=14% Similarity=0.256 Sum_probs=38.1
Q ss_pred CCCeEEEEEccCCCCCCCCCCcchhHHHHHHHHHHHHHHcCCCCCCceeEEEecCCCCCCC
Q 009713 315 VVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHSRFLFIPGPDDAGP 375 (528)
Q Consensus 315 ~~P~~~Vl~G~F~s~~~~~~~~~~~~~~~~f~~la~~l~~~p~l~~~~~~v~VPG~~Dp~~ 375 (528)
..|..+|++||+++..... ....+.+.++.+.+++.........+.+++||||||.+.
T Consensus 44 ~~pd~vi~lGDl~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~GNHD~g~ 101 (171)
T cd07384 44 LKPDVVLFLGDLFDGGRIA---DSEEWEEYVKRFKKIFFLPSNGLEDIPVYYVPGNHDIGY 101 (171)
T ss_pred cCCCEEEEeccccCCcEeC---CHHHHHHHHHHHHHHhcccccccCCceEEEECCccccCC
Confidence 3799999999999864321 123455555666555542210012579999999999985
No 41
>COG1409 Icc Predicted phosphohydrolases [General function prediction only]
Probab=96.86 E-value=0.0038 Score=62.67 Aligned_cols=76 Identities=25% Similarity=0.434 Sum_probs=55.2
Q ss_pred eEEEEeCCccC--cHhHHHHHHHHHhcccCCCCCCeEEEEEccCCCCCCCCCCcchhHHHHHHHHHHHHHHcCCCCCCce
Q 009713 285 MFVILSDIWLD--NEEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHS 362 (528)
Q Consensus 285 ~~v~lSdv~ld--~~~~le~L~~ll~~~~~~~~~P~~~Vl~G~F~s~~~~~~~~~~~~~~~~f~~la~~l~~~p~l~~~~ 362 (528)
+++-+||+|++ .....+.+..++..++.. .|+.+|+.||.+... ..+.|+.+.++|. .+....
T Consensus 2 ~i~~isD~H~~~~~~~~~~~~~~~~~~i~~~--~~D~~v~tGDl~~~~----------~~~~~~~~~~~l~---~~~~~~ 66 (301)
T COG1409 2 RIAHISDLHLGALGVDSEELLEALLAAIEQL--KPDLLVVTGDLTNDG----------EPEEYRRLKELLA---RLELPA 66 (301)
T ss_pred eEEEEecCcccccccchHHHHHHHHHHHhcC--CCCEEEEccCcCCCC----------CHHHHHHHHHHHh---hccCCC
Confidence 47788999999 666667788888877743 799999999998651 1233445555555 222346
Q ss_pred eEEEecCCCCCCC
Q 009713 363 RFLFIPGPDDAGP 375 (528)
Q Consensus 363 ~~v~VPG~~Dp~~ 375 (528)
.+++||||||...
T Consensus 67 ~~~~vpGNHD~~~ 79 (301)
T COG1409 67 PVIVVPGNHDARV 79 (301)
T ss_pred ceEeeCCCCcCCc
Confidence 8999999999864
No 42
>cd07404 MPP_MS158 Microscilla MS158 and related proteins, metallophosphatase domain. MS158 is an uncharacterized Microscilla protein with a metallophosphatase domain. Microscilla proteins MS152, and MS153 are also included in this family. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is t
Probab=96.76 E-value=0.0064 Score=56.52 Aligned_cols=28 Identities=7% Similarity=-0.018 Sum_probs=23.3
Q ss_pred cCCCcEEEecCCCCcceEEeCCeE-EEcC
Q 009713 477 YPTPHAIVLADKSEQKAFKYTGIT-CFNP 504 (528)
Q Consensus 477 ~p~Pdvlil~d~~~~f~~~y~gc~-~vNp 504 (528)
.+-+++++.||.|.+....++|++ ++||
T Consensus 135 ~~~v~~~i~GH~H~~~~~~~~g~~~~~np 163 (166)
T cd07404 135 ADPIDLWIHGHTHFNFDYRIGGTRVLSNQ 163 (166)
T ss_pred hcCCCEEEECCccccceEEECCEEEEecC
Confidence 466789999999999888999987 4566
No 43
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=96.76 E-value=0.0053 Score=65.92 Aligned_cols=100 Identities=11% Similarity=0.128 Sum_probs=57.5
Q ss_pred eEEEEeCCccCcHh----HHHHH----HHHHhcccCCCCCCeEEEEEccCCCCCCCCCCcchhHHHHHHHHHHHHHHcCC
Q 009713 285 MFVILSDIWLDNEE----VMGKL----EVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHP 356 (528)
Q Consensus 285 ~~v~lSdv~ld~~~----~le~L----~~ll~~~~~~~~~P~~~Vl~G~F~s~~~~~~~~~~~~~~~~f~~la~~l~~~p 356 (528)
+++.+||+|++... ..+.. ..+...... ..|+++|++||+.+.... . ..-.+.|.++...|.+
T Consensus 2 kilh~SDlHlG~~~~~~~~~~~~~~~l~~l~~~i~~--~~~D~viIaGDifD~~~p---~--~~a~~~~~~~l~~L~~-- 72 (407)
T PRK10966 2 RILHTSDWHLGQNFYSKSRAAEHQAFLDWLLEQVQE--HQVDAIIVAGDIFDTGSP---P--SYARELYNRFVVNLQQ-- 72 (407)
T ss_pred EEEEEcccCCCCcccCcccHHHHHHHHHHHHHHHHh--cCCCEEEECCccccCCCC---c--HHHHHHHHHHHHHHHh--
Confidence 58899999998641 12222 333332233 479999999999986321 1 1112334444333432
Q ss_pred CCCCceeEEEecCCCCCCCCCCCCCCCCchhhHHHHhhhCCceEEecCCe
Q 009713 357 RLKEHSRFLFIPGPDDAGPSTVLPRCALPKYLTEELQKYIPNAIFSSNPC 406 (528)
Q Consensus 357 ~l~~~~~~v~VPG~~Dp~~~~~lPqpplp~~~~~~l~~~~~n~~~~sNPc 406 (528)
..+++++||||||...+.- ....+. .-.++++..|++
T Consensus 73 ---~~~~v~~I~GNHD~~~~l~---------~~~~~l-~~~gi~vl~~~~ 109 (407)
T PRK10966 73 ---TGCQLVVLAGNHDSVATLN---------ESRDLL-AFLNTTVIASAS 109 (407)
T ss_pred ---cCCcEEEEcCCCCChhhhh---------hHHHHH-HHCCcEEEeccc
Confidence 1468999999999764211 112222 135788888873
No 44
>PF00149 Metallophos: Calcineurin-like phosphoesterase; InterPro: IPR004843 This domain is found in a diverse range of phosphoesterases [], including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases, as well as nucleases such as bacterial SbcD or yeast MRE11. The most conserved regions in this domain centre around the metal chelating residues.; GO: 0016787 hydrolase activity; PDB: 2IAE_C 3DW8_F 3FGA_C 2IE4_C 2NYM_C 2NYL_C 3K7V_C 2NPP_C 2IE3_C 3K7W_C ....
Probab=96.69 E-value=0.008 Score=53.41 Aligned_cols=77 Identities=16% Similarity=0.220 Sum_probs=44.1
Q ss_pred eEEEEeCCccCcHhHHHHHHHHHhcccCCCCCCeEEEEEccCCCCCCCCCCcchhHHHHHHHHHHHHHHcCCCCCCceeE
Q 009713 285 MFVILSDIWLDNEEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHSRF 364 (528)
Q Consensus 285 ~~v~lSdv~ld~~~~le~L~~ll~~~~~~~~~P~~~Vl~G~F~s~~~~~~~~~~~~~~~~f~~la~~l~~~p~l~~~~~~ 364 (528)
+|+++||+|++..........+...... ..|+.+|++||+++.... .......+....... .....+
T Consensus 2 ri~~isD~H~~~~~~~~~~~~~~~~~~~--~~~d~ii~~GD~~~~~~~-----~~~~~~~~~~~~~~~------~~~~~~ 68 (200)
T PF00149_consen 2 RILVISDLHGGYDDDSDAFRKLDEIAAE--NKPDFIIFLGDLVDGGNP-----SEEWRAQFWFFIRLL------NPKIPV 68 (200)
T ss_dssp EEEEEEBBTTTHHHHCHHHHHHHHHHHH--TTTSEEEEESTSSSSSSH-----HHHHHHHHHHHHHHH------HTTTTE
T ss_pred eEEEEcCCCCCCcchhHHHHHHHHHhcc--CCCCEEEeeccccccccc-----cccchhhhccchhhh------hccccc
Confidence 5889999999887652111111121122 379999999999986431 111111111111111 245799
Q ss_pred EEecCCCCCC
Q 009713 365 LFIPGPDDAG 374 (528)
Q Consensus 365 v~VPG~~Dp~ 374 (528)
+++|||||..
T Consensus 69 ~~~~GNHD~~ 78 (200)
T PF00149_consen 69 YFILGNHDYY 78 (200)
T ss_dssp EEEE-TTSSH
T ss_pred cccccccccc
Confidence 9999999985
No 45
>cd07383 MPP_Dcr2 Saccharomyces cerevisiae DCR2 phosphatase and related proteins, metallophosphatase domain. DCR2 phosphatase (Dosage-dependent Cell Cycle Regulator 2) functions together with DCR1 (Gid8) in a common pathway to accelerate initiation of DNA replication in Saccharomyces cerevisiae. Genetic analysis suggests that DCR1 functions upstream of DCR2. DCR2 interacts with and dephosphorylates Sic1, an inhibitor of mitotic cyclin/cyclin-dependent kinase complexes, which may serve to trigger the initiation of cell division. DCR2 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAP
Probab=96.68 E-value=0.0075 Score=57.95 Aligned_cols=75 Identities=17% Similarity=0.213 Sum_probs=45.9
Q ss_pred CeEEEEeCCccCcHh-----------HHHHHHHHHhcccCCCCCCeEEEEEccCCCCCCCCCCcchhHHHHHHHHHHHHH
Q 009713 284 DMFVILSDIWLDNEE-----------VMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMI 352 (528)
Q Consensus 284 ~~~v~lSdv~ld~~~-----------~le~L~~ll~~~~~~~~~P~~~Vl~G~F~s~~~~~~~~~~~~~~~~f~~la~~l 352 (528)
.+++++||+|++... +++.+.+++. . ..|+.+|++||.++..... .+..+.++++.+.+
T Consensus 3 ~ki~~isDlH~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~d~vv~~GDl~~~~~~~-----~~~~~~~~~~~~~l 72 (199)
T cd07383 3 FKILQFADLHFGEGEGTCEGCEADLKTVAFIERVLD---A--EKPDLVVLTGDLITGENTN-----DNSTSALDKAVSPM 72 (199)
T ss_pred eEEEEEeeecccCCCCCCCcchhhHHHHHHHHHHHh---h--cCCCEEEECCccccCCCCc-----hHHHHHHHHHHHHH
Confidence 368899999997652 2233333333 2 3799999999999753211 11223333333333
Q ss_pred HcCCCCCCceeEEEecCCCCC
Q 009713 353 AAHPRLKEHSRFLFIPGPDDA 373 (528)
Q Consensus 353 ~~~p~l~~~~~~v~VPG~~Dp 373 (528)
.+ ..+++.++|||||.
T Consensus 73 ~~-----~~~p~~~~~GNHD~ 88 (199)
T cd07383 73 ID-----RKIPWAATFGNHDG 88 (199)
T ss_pred HH-----cCCCEEEECccCCC
Confidence 32 24799999999993
No 46
>cd07401 MPP_TMEM62_N Homo sapiens TMEM62, N-terminal metallophosphatase domain. TMEM62 (transmembrane protein 62) is an uncharacterized Homo sapiens transmembrane protein with an N-terminal metallophosphatase domain. TMEM62 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=96.64 E-value=0.006 Score=61.32 Aligned_cols=85 Identities=14% Similarity=0.202 Sum_probs=48.7
Q ss_pred EEEEeCCccCcHh--HHHHH-HHHHhcccCCCCCCeEEEEEccCCCCCCCCCCcchhHHHHHHHHHHHHHHcCCCCCCce
Q 009713 286 FVILSDIWLDNEE--VMGKL-EVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHS 362 (528)
Q Consensus 286 ~v~lSdv~ld~~~--~le~L-~~ll~~~~~~~~~P~~~Vl~G~F~s~~~~~~~~~~~~~~~~f~~la~~l~~~p~l~~~~ 362 (528)
|+.+||+|++... ..... +.++...... .|+.+|++||+++........ ..+..+..+++-+.+.+.. .....
T Consensus 2 ~~~iSDlH~g~~~~~~~~~~~~~~~~~i~~~--~pd~i~~~GD~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~ 77 (256)
T cd07401 2 FVHISDIHVSSFHPPNRAQDETFCSNFIDVI--KPALVLATGDLTDNKTGNKLP-SYQYQEEWQKYYNILKESS-VINKE 77 (256)
T ss_pred EEEecccccCCcCchhhhhHHHHHHHHHHhh--CCCEEEEccccccccccCCCc-ccccHHHHHHHHHHHHHhC-CCCcc
Confidence 6788999997552 22222 4445544443 799999999999864321111 1112222223333333221 12357
Q ss_pred eEEEecCCCCCC
Q 009713 363 RFLFIPGPDDAG 374 (528)
Q Consensus 363 ~~v~VPG~~Dp~ 374 (528)
.+..||||||.+
T Consensus 78 p~~~v~GNHD~~ 89 (256)
T cd07401 78 KWFDIRGNHDLF 89 (256)
T ss_pred eEEEeCCCCCcC
Confidence 899999999996
No 47
>cd07424 MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase domain. PrpA and PrpB are bacterial type I serine/threonine and tyrosine phosphatases thought to modulate the expression of proteins that protect the cell upon accumulation of misfolded proteins in the periplasm. The PPP (phosphoprotein phosphatase) family, to which PrpA and PrpB belong, is one of two known protein phosphatase families specific for serine and threonine. This family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all
Probab=96.63 E-value=0.044 Score=53.12 Aligned_cols=31 Identities=10% Similarity=0.233 Sum_probs=27.0
Q ss_pred CCCcEEEecCCCCcceEEeCCeEEEcCCCCC
Q 009713 478 PTPHAIVLADKSEQKAFKYTGITCFNPGSFS 508 (528)
Q Consensus 478 p~Pdvlil~d~~~~f~~~y~gc~~vNpGsf~ 508 (528)
+-++++|.||++.++....++.++||||+..
T Consensus 167 ~~~~~iV~GHTh~~~~~~~~~~i~ID~Gsv~ 197 (207)
T cd07424 167 KGVDAVVHGHTPVKRPLRLGNVLYIDTGAVF 197 (207)
T ss_pred CCCCEEEECCCCCCcceEECCEEEEECCCCC
Confidence 3468999999998888888999999999975
No 48
>cd07390 MPP_AQ1575 Aquifex aeolicus AQ1575 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to AQ1575, an uncharacterized Aquifex aeolicus protein. AQ1575 may play an accessory role in DNA repair, based on the close proximity of its gene to Holliday junction resolvasome genes. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a d
Probab=96.62 E-value=0.016 Score=54.26 Aligned_cols=102 Identities=12% Similarity=0.124 Sum_probs=62.2
Q ss_pred EEEeCCccCcHhHHH-----------HHHHHHhcccCCCCCCeEEEEEccCCCCCCCCCCcchhHHHHHHHHHHHHHHcC
Q 009713 287 VILSDIWLDNEEVMG-----------KLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAH 355 (528)
Q Consensus 287 v~lSdv~ld~~~~le-----------~L~~ll~~~~~~~~~P~~~Vl~G~F~s~~~~~~~~~~~~~~~~f~~la~~l~~~ 355 (528)
.|+||+|++....++ ..+.+++.+.+.-..++.+|++||+++... ...+ .+.+.+.
T Consensus 2 ~~isD~Hlg~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~d~vi~~GDl~~~~~------~~~~-------~~~l~~~ 68 (168)
T cd07390 2 YFTSDTHFGHANILRFCNRPFDDVEEMDEALIRNWNETVGPDDTVYHLGDFSFGGK------AGTE-------LELLSRL 68 (168)
T ss_pred eEecccccCCHHHHccCCCCCCCHHHHHHHHHHHHhhhcCCCCEEEEeCCCCCCCC------hHHH-------HHHHHhC
Confidence 378999999886543 244556555553235899999999997521 1111 2233332
Q ss_pred CCCCCceeEEEecCCCCCCCCCCCCCCCCchhhHHHHhhhCCceEEecCCeEEEEccEEEEEEe
Q 009713 356 PRLKEHSRFLFIPGPDDAGPSTVLPRCALPKYLTEELQKYIPNAIFSSNPCRIKFYTQEIVFFR 419 (528)
Q Consensus 356 p~l~~~~~~v~VPG~~Dp~~~~~lPqpplp~~~~~~l~~~~~n~~~~sNPcri~~~~~eIvi~r 419 (528)
+ ..+++|+||||......+.. . .......+....+.+.+..|.++|
T Consensus 69 ~-----~~~~~v~GNHD~~~~~~~~~----------~---~~~~~~~~~~~~~~~~~~~i~l~H 114 (168)
T cd07390 69 N-----GRKHLIKGNHDSSLERKLLA----------F---LLKFESVLQAVRLKIGGRRVYLSH 114 (168)
T ss_pred C-----CCeEEEeCCCCchhhhcccc----------c---ccccceeeeEEEEEECCEEEEEEe
Confidence 2 36999999999764222211 0 001233445577888899999988
No 49
>cd07399 MPP_YvnB Bacillus subtilis YvnB and related proteins, metallophosphatase domain. YvnB (BSU35040) is an uncharacterized Bacillus subtilis protein with a metallophosphatase domain. This family includes bacterial and eukaryotic proteins similar to YvnB. YvnB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for
Probab=96.56 E-value=0.0042 Score=60.71 Aligned_cols=79 Identities=11% Similarity=0.100 Sum_probs=47.8
Q ss_pred eEEEEeCCccCcHhHHHHHHHHHhcccCC--CCCCeEEEEEccCCCCCCCCCCcchhHHHHHHHHHHHHHHcCCCCCCce
Q 009713 285 MFVILSDIWLDNEEVMGKLEVVLDGFESV--EVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHS 362 (528)
Q Consensus 285 ~~v~lSdv~ld~~~~le~L~~ll~~~~~~--~~~P~~~Vl~G~F~s~~~~~~~~~~~~~~~~f~~la~~l~~~p~l~~~~ 362 (528)
+|+++||++.......+.++..+++..+. +..|+.+|++||+++.... ..+|.... +.+..+.+ ..+
T Consensus 2 ~~~~~~D~q~~~~~~~~~~~~~~~~i~~~~~~~~~d~iv~~GDl~~~~~~-----~~~~~~~~----~~~~~l~~--~~~ 70 (214)
T cd07399 2 TLAVLPDTQYYTESYPEVFDAQTDWIVDNAEALNIAFVLHLGDIVDDGDN-----DAEWEAAD----KAFARLDK--AGI 70 (214)
T ss_pred EEEEecCCCcCCcCCHHHHHHHHHHHHHHHHHcCCCEEEECCCccCCCCC-----HHHHHHHH----HHHHHHHH--cCC
Confidence 58899999986665545444444433221 1369999999999975321 12333222 22222111 346
Q ss_pred eEEEecCCCCCC
Q 009713 363 RFLFIPGPDDAG 374 (528)
Q Consensus 363 ~~v~VPG~~Dp~ 374 (528)
.+..+|||||-.
T Consensus 71 p~~~~~GNHD~~ 82 (214)
T cd07399 71 PYSVLAGNHDLV 82 (214)
T ss_pred cEEEECCCCcch
Confidence 899999999954
No 50
>cd04490 PolII_SU_OBF PolII_SU_OBF: A subfamily of OB folds corresponding to the OB fold found in Pyrococcus abyssi DNA polymerase II (PolII) small subunit. PolII is a family D DNA polymerase, having a 3-prime to 5-prime exonuclease activity. P. abyssi PolII is heterodimeric. The large subunit appears to be the polymerase, and the small subunit may be the exonuclease. The small subunit contains a calcineurin-like phosphatase superfamily domain C-terminal to this OB-fold domain.
Probab=96.56 E-value=0.02 Score=47.07 Aligned_cols=66 Identities=17% Similarity=0.265 Sum_probs=48.7
Q ss_pred EEEEEEEEc---CCC--cEEEEeCCcEEEEEecccccc----ceeeccCeEEEEEEEEee-CCeEEEEEecCCCCC
Q 009713 181 WVMGVISQL---EDG--HFYLEDLAASVEIDLSKAKIT----TGFFTENTIVVAEGEMLV-DGIFQVITCGFPPLE 246 (528)
Q Consensus 181 ~vlGml~~~---~~g--~~~LED~sg~V~Ldls~~~~~----~g~f~~G~vV~veG~~~~-~g~F~V~~i~~Pp~e 246 (528)
.+.|||+.. ..| .+.|||.+|++++.+-..... ..++.+|.+|+++|.... ++.+.|.+|..|+..
T Consensus 3 ~i~GiI~~v~~TK~g~~~~~leD~~G~~Ev~~F~~~~~~~~~~~~l~~d~~v~v~g~v~~~~~~l~~~~I~~~~~~ 78 (79)
T cd04490 3 SIIGMVNDVRSTKNGHRIVELEDTTGRITVLLTKDKEELFEEAEDILPDEVIGVSGTVSKDGGLIFADEIFRPDVP 78 (79)
T ss_pred EEEEEEeEEEEcCCCCEEEEEECCCCEEEEEEeCchhhhhhhhhhccCCCEEEEEEEEecCCCEEEEEEeEcCCCC
Confidence 467777643 344 578999999999976432222 357789999999999953 236889999999865
No 51
>TIGR03729 acc_ester putative phosphoesterase. Members of this protein family belong to the larger family pfam00149 (calcineurin-like phosphoesterase), a family largely defined by small motifs of metal-chelating residues. The subfamily in this model shows a good but imperfect co-occurrence in species with domain TIGR03715 that defines a novel class of signal peptide typical of the accessory secretory system.
Probab=96.53 E-value=0.0063 Score=60.32 Aligned_cols=72 Identities=15% Similarity=0.139 Sum_probs=46.3
Q ss_pred eEEEEeCCccCcHhH--HHHHHHHHhcccCCCCCCeEEEEEccCCCCCCCCCCcchhHHHHHHHHHHHHHHcCCCCCCce
Q 009713 285 MFVILSDIWLDNEEV--MGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHS 362 (528)
Q Consensus 285 ~~v~lSdv~ld~~~~--le~L~~ll~~~~~~~~~P~~~Vl~G~F~s~~~~~~~~~~~~~~~~f~~la~~l~~~p~l~~~~ 362 (528)
+|+++||+|++.... .+.|..+++..... .|+++|++||+++.. ....+.++.+.+. ...
T Consensus 1 ki~~iSDlH~~~~~~~~~~~l~~~~~~~~~~--~~d~vv~~GDl~~~~--------~~~~~~~~~l~~~--------~~~ 62 (239)
T TIGR03729 1 KIAFSSDLHIDLNHFDTEEMLETLAQYLKKQ--KIDHLHIAGDISNDF--------QRSLPFIEKLQEL--------KGI 62 (239)
T ss_pred CEEEEEeecCCCCCCCHHHHHHHHHHHHHhc--CCCEEEECCccccch--------hhHHHHHHHHHHh--------cCC
Confidence 378899999874332 23366666655443 599999999999741 1122233333321 236
Q ss_pred eEEEecCCCCCC
Q 009713 363 RFLFIPGPDDAG 374 (528)
Q Consensus 363 ~~v~VPG~~Dp~ 374 (528)
++++||||||-.
T Consensus 63 pv~~v~GNHD~~ 74 (239)
T TIGR03729 63 KVTFNAGNHDML 74 (239)
T ss_pred cEEEECCCCCCC
Confidence 899999999975
No 52
>cd08166 MPP_Cdc1_like_1 uncharacterized subgroup related to Saccharomyces cerevisiae CDC1, metallophosphatase domain. A functionally uncharacterized subgroup related to the metallophosphatase domain of Saccharomyces cerevisiae Cdc1, S. cerevisiae Ted1 and human MPPE1. Cdc1 is an endoplasmic reticulum-localized transmembrane lipid phosphatase and is a subunit of DNA polymerase delta. TED1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), acts together with Emp24p and Erv25p in cargo exit from the ER. The MPPE1 gene is a candidate susceptibility gene for Bipolar disorder. Proteins in this uncharacterized subgroup belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like R
Probab=96.47 E-value=0.0064 Score=58.65 Aligned_cols=70 Identities=14% Similarity=0.351 Sum_probs=48.0
Q ss_pred CCeEEEEEccCCCCCCCCCCcchhHHHHHHHHHHHHHHcCCCCCCceeEEEecCCCCCCCCCCCCCCCCchhhHHHHhhh
Q 009713 316 VPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHSRFLFIPGPDDAGPSTVLPRCALPKYLTEELQKY 395 (528)
Q Consensus 316 ~P~~~Vl~G~F~s~~~~~~~~~~~~~~~~f~~la~~l~~~p~l~~~~~~v~VPG~~Dp~~~~~lPqpplp~~~~~~l~~~ 395 (528)
.|+++|++||.++.... .+...+.+.++.+.+++.. ..+.+++.||||||.|.....|. | .-.+++++.
T Consensus 42 ~PD~Vi~lGDL~D~G~~---~~~~e~~e~l~Rf~~If~~----~~~~~~~~VpGNHDIG~~~~~~~---~-~~v~RF~~~ 110 (195)
T cd08166 42 QPDIVIFLGDLMDEGSI---ANDDEYYSYVQRFINIFEV----PNGTKIIYLPGDNDIGGEEEDPI---E-SKIRRFEKY 110 (195)
T ss_pred CCCEEEEeccccCCCCC---CCHHHHHHHHHHHHHHhcC----CCCCcEEEECCCCCcCCCCCCcC---H-HHHHHHHHh
Confidence 69999999999987322 2245677777777777654 34689999999999985444444 2 234455543
Q ss_pred C
Q 009713 396 I 396 (528)
Q Consensus 396 ~ 396 (528)
+
T Consensus 111 F 111 (195)
T cd08166 111 F 111 (195)
T ss_pred h
Confidence 3
No 53
>TIGR00583 mre11 DNA repair protein (mre11). All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria.
Probab=96.45 E-value=0.009 Score=64.01 Aligned_cols=88 Identities=13% Similarity=0.130 Sum_probs=54.3
Q ss_pred eEEEEeCCccCcHh--------HHHHHHHHHhcccCCCCCCeEEEEEccCCCCCCCCCCcchhHHHHHHHHHH-------
Q 009713 285 MFVILSDIWLDNEE--------VMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLG------- 349 (528)
Q Consensus 285 ~~v~lSdv~ld~~~--------~le~L~~ll~~~~~~~~~P~~~Vl~G~F~s~~~~~~~~~~~~~~~~f~~la------- 349 (528)
+|+.+||.|++-.. .++.|+++++.... ..|+++|++||+.+..... ........+.+++..
T Consensus 5 KIlh~SD~HlG~~~~~~~r~~D~~~~f~eil~~a~~--~~vD~VLiaGDLFd~~~Ps-~~~~~~~~~~lr~~~~g~~p~~ 81 (405)
T TIGR00583 5 RILVSTDNHVGYGENDPVRGDDSWNTFEEVLQIAKE--QDVDMILLGGDLFHENKPS-RKSLYQVLRSLRLYCLGDKPCE 81 (405)
T ss_pred EEEEEcCCCCCCccCCchhhhhHHHHHHHHHHHHHH--cCCCEEEECCccCCCCCCC-HHHHHHHHHHHHHhhccCCccc
Confidence 68899999998432 24567777775544 3799999999999874321 112222223333200
Q ss_pred -HHHHc---------C-------CCCCCceeEEEecCCCCCCC
Q 009713 350 -QMIAA---------H-------PRLKEHSRFLFIPGPDDAGP 375 (528)
Q Consensus 350 -~~l~~---------~-------p~l~~~~~~v~VPG~~Dp~~ 375 (528)
++|++ | |++..+++|+.|+||||...
T Consensus 82 ~~~Lsd~~~~~~~~~~~~~ny~d~~~~~~iPVf~I~GNHD~p~ 124 (405)
T TIGR00583 82 LEFLSDASVVFNQSAFGNVNYEDPNINVAIPVFSIHGNHDDPS 124 (405)
T ss_pred hhhccchhhhcccccccccccccccccCCCCEEEEcCCCCCcc
Confidence 12221 1 33335799999999999864
No 54
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=96.35 E-value=0.011 Score=58.55 Aligned_cols=73 Identities=15% Similarity=0.267 Sum_probs=42.2
Q ss_pred EEEeCCccCcH------hH----HHHHHHHHhcccCCCCCCeEEEEEccCCCCCCCCCCcchhHHHHHHHHHHHHHHcCC
Q 009713 287 VILSDIWLDNE------EV----MGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHP 356 (528)
Q Consensus 287 v~lSdv~ld~~------~~----le~L~~ll~~~~~~~~~P~~~Vl~G~F~s~~~~~~~~~~~~~~~~f~~la~~l~~~p 356 (528)
.++||+|+++. .+ .+.++++...++..-..|+++|++||+++... ...+.+.. +.|.+.+
T Consensus 2 ~~~sDlHl~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~D~viiaGDl~~~~~------~~~~~~~l----~~l~~l~ 71 (232)
T cd07393 2 FAIADLHLNLDPTKPMDVFGPEWKNHTEKIKENWDNVVAPEDIVLIPGDISWAMK------LEEAKLDL----AWIDALP 71 (232)
T ss_pred eEEEeeccCCCCCCCCcccCccHHHHHHHHHHHHHhcCCCCCEEEEcCCCccCCC------hHHHHHHH----HHHHhCC
Confidence 46799999852 11 23444444444443237999999999985321 12222222 2343322
Q ss_pred CCCCceeEEEecCCCCCC
Q 009713 357 RLKEHSRFLFIPGPDDAG 374 (528)
Q Consensus 357 ~l~~~~~~v~VPG~~Dp~ 374 (528)
..+++||||||.+
T Consensus 72 -----~~v~~V~GNHD~~ 84 (232)
T cd07393 72 -----GTKVLLKGNHDYW 84 (232)
T ss_pred -----CCeEEEeCCcccc
Confidence 2478999999975
No 55
>PRK09968 serine/threonine-specific protein phosphatase 2; Provisional
Probab=96.18 E-value=0.02 Score=56.14 Aligned_cols=38 Identities=8% Similarity=0.156 Sum_probs=30.5
Q ss_pred CCcEEEecCCCCcceEEeCCeEEEcCCCCCCCcEEEEEE
Q 009713 479 TPHAIVLADKSEQKAFKYTGITCFNPGSFSSDSTFVAYR 517 (528)
Q Consensus 479 ~Pdvlil~d~~~~f~~~y~gc~~vNpGsf~~~~sf~~y~ 517 (528)
-.+++|.||++.++....++.++||||++. +|.-..|.
T Consensus 179 ~~~~vv~GHTh~~~~~~~~~~i~IDtGs~~-gG~Lt~~~ 216 (218)
T PRK09968 179 GADYFIFGHMMFDNIQTFANQIYIDTGSPK-SGRLSFYK 216 (218)
T ss_pred CCCEEEECCCCcCcceeECCEEEEECCCCC-CCceeEEe
Confidence 347999999998888888899999999975 45555543
No 56
>TIGR00024 SbcD_rel_arch putative phosphoesterase, SbcD/Mre11-related. Members of this uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11. SbcD is a subunit of the SbcCD nuclease of E. coli that can cleave DNA hairpins to unblock stalled DNA replication. All members of this family are archaeal.
Probab=96.15 E-value=0.015 Score=57.42 Aligned_cols=78 Identities=13% Similarity=0.144 Sum_probs=47.3
Q ss_pred CeEEEEeCCccCcHhHHHH---------HHHHHhcccC--CCCCCeEEEEEccCCCCCCCCCCcchhHHHHHHHHHHHHH
Q 009713 284 DMFVILSDIWLDNEEVMGK---------LEVVLDGFES--VEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMI 352 (528)
Q Consensus 284 ~~~v~lSdv~ld~~~~le~---------L~~ll~~~~~--~~~~P~~~Vl~G~F~s~~~~~~~~~~~~~~~~f~~la~~l 352 (528)
...+++||+||+....+.. +++.++...+ .+..|..+|++||....... . .+ ++.+.+++
T Consensus 15 ~~~LvisDlHLG~~~~~~~~Gi~~P~~~~~~~l~rl~~li~~~~~d~vIi~GDl~h~~~~--~---~~----~~~~~~~l 85 (225)
T TIGR00024 15 GDKAVIADLHLGFERHLDEQGVMVPGFQFREIIERALSIADKYGIEALIINGDLKHEFKK--G---LE----WRFIREFI 85 (225)
T ss_pred cCeEEEEeccCCCHHHHHhcCCcCChhHHHHHHHHHHHHHhhcCCCEEEEcCccccccCC--h---HH----HHHHHHHH
Confidence 3577899999997654321 2233333322 11369999999999864321 0 22 23344445
Q ss_pred HcCCCCCCceeEEEecCCCCCCC
Q 009713 353 AAHPRLKEHSRFLFIPGPDDAGP 375 (528)
Q Consensus 353 ~~~p~l~~~~~~v~VPG~~Dp~~ 375 (528)
.+. ...+++|+||||+..
T Consensus 86 ~~~-----~~~v~~V~GNHD~~~ 103 (225)
T TIGR00024 86 EVT-----FRDLILIRGNHDALI 103 (225)
T ss_pred Hhc-----CCcEEEECCCCCCcc
Confidence 431 248999999999863
No 57
>cd07423 MPP_PrpE Bacillus subtilis PrpE and related proteins, metallophosphatase domain. PrpE (protein phosphatase E) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases and a key signal transduction pathway component controlling the expression of spore germination receptors GerA and GerK in Bacillus subtilis. PrpE is closely related to ApaH (also known symmetrical Ap(4)A hydrolase and bis(5'nucleosyl)-tetraphosphatase). PrpE has specificity for phosphotyrosine only, unlike the serine/threonine phosphatases to which it is related. The Bacilli members of this family are single domain proteins while the other members have N- and C-terminal domains in addition to this phosphatase domain. The PPP (phosphoprotein phosphatase) family, to which PrpE belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpA/Prp
Probab=95.82 E-value=0.15 Score=50.50 Aligned_cols=31 Identities=6% Similarity=0.014 Sum_probs=26.1
Q ss_pred CCCcEEEecCCCCcceEEeCCeEEEcCCCCC
Q 009713 478 PTPHAIVLADKSEQKAFKYTGITCFNPGSFS 508 (528)
Q Consensus 478 p~Pdvlil~d~~~~f~~~y~gc~~vNpGsf~ 508 (528)
.-.+++|.||.+.+.....++..+||+|+..
T Consensus 180 ~~~~~vv~GHt~~~~~~~~~~~i~IDtGav~ 210 (234)
T cd07423 180 RGDALVVYGHTPVPEPRWLNNTINIDTGCVF 210 (234)
T ss_pred CCCeEEEECCCCCccceEeCCEEEEECCCCC
Confidence 4567899999987777778899999999975
No 58
>COG1407 Predicted ICC-like phosphoesterases [General function prediction only]
Probab=95.81 E-value=0.033 Score=55.02 Aligned_cols=89 Identities=16% Similarity=0.260 Sum_probs=53.0
Q ss_pred cCCeEEEEeCCccCcHhHH------------HHHHHHHhcccCCCCCCeEEEEEccCCCCCCCCCCcchhHHHHHHHHHH
Q 009713 282 ANDMFVILSDIWLDNEEVM------------GKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLG 349 (528)
Q Consensus 282 ~~~~~v~lSdv~ld~~~~l------------e~L~~ll~~~~~~~~~P~~~Vl~G~F~s~~~~~~~~~~~~~~~~f~~la 349 (528)
...+.+++||+||+-...+ +.+.+.+..+... ..|..+|+.||+=..-..........+ ..|.
T Consensus 18 ~~~~~lVvADlHlG~e~~~~r~Gi~lP~~~~~~~~~~l~~ii~~-~~p~~lIilGD~KH~~~~~~~~e~~~~----~~f~ 92 (235)
T COG1407 18 PLGRTLVVADLHLGYEESLARRGINLPRYQTDRILKRLDRIIER-YGPKRLIILGDLKHEFGKSLRQEKEEV----REFL 92 (235)
T ss_pred ccCcEEEEEecccchhHHHHhcCcccCchhHHHHHHHHHHHHHh-cCCCEEEEcCccccccCccccccHHHH----HHHH
Confidence 3456789999999866554 3344444433332 379999999998543111001111111 2233
Q ss_pred HHHHcCCCCCCceeEEEecCCCCCCCCCCCCCC
Q 009713 350 QMIAAHPRLKEHSRFLFIPGPDDAGPSTVLPRC 382 (528)
Q Consensus 350 ~~l~~~p~l~~~~~~v~VPG~~Dp~~~~~lPqp 382 (528)
+++. .-.+++|+||||+....++|..
T Consensus 93 ~~~~-------~~evi~i~GNHD~~i~~~~~~~ 118 (235)
T COG1407 93 ELLD-------EREVIIIRGNHDNGIEEILPGF 118 (235)
T ss_pred HHhc-------cCcEEEEeccCCCccccccccC
Confidence 3332 1269999999999987788865
No 59
>cd08163 MPP_Cdc1 Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. Cdc1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site
Probab=95.66 E-value=0.13 Score=51.80 Aligned_cols=87 Identities=13% Similarity=0.232 Sum_probs=51.9
Q ss_pred CCeEEEEEccCCCCCCCCCCcchhHHHHHHHHHHHHHHcCCCCCCceeEEEecCCCCCCCCCCCCCCCCchhhHHHHhhh
Q 009713 316 VPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHSRFLFIPGPDDAGPSTVLPRCALPKYLTEELQKY 395 (528)
Q Consensus 316 ~P~~~Vl~G~F~s~~~~~~~~~~~~~~~~f~~la~~l~~~p~l~~~~~~v~VPG~~Dp~~~~~lPqpplp~~~~~~l~~~ 395 (528)
.|+++|++||.++.... .+...+.+.++.+.+++.. +.....+..||||||.+-... .......++++.
T Consensus 45 ~PD~vv~lGDL~d~G~~---~~~~~~~~~~~rf~~i~~~---~~~~~pv~~VpGNHDig~~~~-----~~~~~~~rf~~~ 113 (257)
T cd08163 45 KPDSTIFLGDLFDGGRD---WADEYWKKEYNRFMRIFDP---SPGRKMVESLPGNHDIGFGNG-----VVLPVRQRFEKY 113 (257)
T ss_pred CCCEEEEecccccCCee---CcHHHHHHHHHHHHHHhcC---CCccceEEEeCCCcccCCCCC-----CCHHHHHHHHHH
Confidence 69999999999986211 1234555566666666643 223468999999999864221 112224555554
Q ss_pred CCceEEecCCeEEEEccEEEEEE
Q 009713 396 IPNAIFSSNPCRIKFYTQEIVFF 418 (528)
Q Consensus 396 ~~n~~~~sNPcri~~~~~eIvi~ 418 (528)
++. +| ..+.+.+..+|+.
T Consensus 114 Fg~----~~-~~~~~~~~~fV~L 131 (257)
T cd08163 114 FGP----TS-RVIDVGNHTFVIL 131 (257)
T ss_pred hCC----Cc-eEEEECCEEEEEE
Confidence 442 23 3455666666653
No 60
>PHA02239 putative protein phosphatase
Probab=95.21 E-value=0.072 Score=52.97 Aligned_cols=72 Identities=15% Similarity=0.290 Sum_probs=44.1
Q ss_pred eEEEEeCCccCcHhHHHHHHHHHhcccCCCCCCeEEEEEccCCCCCCCCCCcchhHHHHHHHHHHHHHHcCCCCCCceeE
Q 009713 285 MFVILSDIWLDNEEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHSRF 364 (528)
Q Consensus 285 ~~v~lSdv~ld~~~~le~L~~ll~~~~~~~~~P~~~Vl~G~F~s~~~~~~~~~~~~~~~~f~~la~~l~~~p~l~~~~~~ 364 (528)
+++++||+| +. ++.|.+++..+.....+++.+|++||+++.-. .+ .+.++.|.+++. ....+
T Consensus 2 ~~~~IsDIH-G~---~~~l~~ll~~i~~~~~~~d~li~lGD~iDrG~----~s----~~v~~~l~~~~~------~~~~~ 63 (235)
T PHA02239 2 AIYVVPDIH-GE---YQKLLTIMDKINNERKPEETIVFLGDYVDRGK----RS----KDVVNYIFDLMS------NDDNV 63 (235)
T ss_pred eEEEEECCC-CC---HHHHHHHHHHHhhcCCCCCEEEEecCcCCCCC----Ch----HHHHHHHHHHhh------cCCCe
Confidence 367889999 43 34566677665432113589999999999521 11 123333333332 12468
Q ss_pred EEecCCCCCC
Q 009713 365 LFIPGPDDAG 374 (528)
Q Consensus 365 v~VPG~~Dp~ 374 (528)
++|+||||..
T Consensus 64 ~~l~GNHE~~ 73 (235)
T PHA02239 64 VTLLGNHDDE 73 (235)
T ss_pred EEEECCcHHH
Confidence 8999999973
No 61
>cd07403 MPP_TTHA0053 Thermus thermophilus TTHA0053 and related proteins, metallophosphatase domain. TTHA0053 is an uncharacterized Thermus thermophilus protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=95.12 E-value=0.031 Score=50.12 Aligned_cols=29 Identities=10% Similarity=0.221 Sum_probs=23.8
Q ss_pred CcEEEecCCCCcceEE-----eCCeEEEcCCCCC
Q 009713 480 PHAIVLADKSEQKAFK-----YTGITCFNPGSFS 508 (528)
Q Consensus 480 Pdvlil~d~~~~f~~~-----y~gc~~vNpGsf~ 508 (528)
|++++.|+.|.++... ..+++|+|++-++
T Consensus 92 ~~~vl~GH~H~~~~~~~~~~~~~~t~~~n~~~~~ 125 (129)
T cd07403 92 PKLFIHGHTHLNYGYQLRIRRVGDTTVINAYGYR 125 (129)
T ss_pred CcEEEEcCcCCCcCccccccccCCEEEEeCCcEE
Confidence 6899999999776644 7899999998653
No 62
>PRK13254 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=94.66 E-value=0.18 Score=46.47 Aligned_cols=62 Identities=31% Similarity=0.415 Sum_probs=49.3
Q ss_pred CcE-EEEEEEEEc---C-CC---cEEEEeCCcEEEEEeccccccceeeccCeEEEEEEEEeeCCeEEEEEec
Q 009713 178 GRR-WVMGVISQL---E-DG---HFYLEDLAASVEIDLSKAKITTGFFTENTIVVAEGEMLVDGIFQVITCG 241 (528)
Q Consensus 178 g~~-~vlGml~~~---~-~g---~~~LED~sg~V~Ldls~~~~~~g~f~~G~vV~veG~~~~~g~F~V~~i~ 241 (528)
|+. .|.||+... . +| +|.|.|....|++.-+...+ .+|.+|+-|+|+|.+..+|.|++++|.
T Consensus 51 g~~vrvgG~V~~gSi~~~~~~~~~F~ltD~~~~i~V~Y~G~lP--d~F~eg~~VVv~G~~~~~g~F~A~~vL 120 (148)
T PRK13254 51 GRRFRLGGLVEKGSVQRGDGLTVRFVVTDGNATVPVVYTGILP--DLFREGQGVVAEGRLQDGGVFVADEVL 120 (148)
T ss_pred CCeEEEeEEEecCcEEeCCCCEEEEEEEeCCeEEEEEECCCCC--ccccCCCEEEEEEEECCCCeEEEEEEE
Confidence 544 799999631 1 22 47899999999998877654 578999999999999767799999993
No 63
>cd08164 MPP_Ted1 Saccharomyces cerevisiae Ted1 and related proteins, metallophosphatase domain. Saccharomyces cerevisiae Ted1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1) is a metallophosphatase domain-containing protein which acts together with Emp24p and Erv25p in cargo exit from the ER. Ted1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the
Probab=94.56 E-value=0.15 Score=49.19 Aligned_cols=56 Identities=14% Similarity=0.193 Sum_probs=39.0
Q ss_pred CCeEEEEEccCCCCCCCCCCcchhHHHHHHHHHHHHHHcC-CC------------CCCceeEEEecCCCCCCC
Q 009713 316 VPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAH-PR------------LKEHSRFLFIPGPDDAGP 375 (528)
Q Consensus 316 ~P~~~Vl~G~F~s~~~~~~~~~~~~~~~~f~~la~~l~~~-p~------------l~~~~~~v~VPG~~Dp~~ 375 (528)
.|++++++||..|+... +.+++.+.++.+-+++-.- +. -...+.++.||||||.+.
T Consensus 44 ~Pd~V~fLGDLfd~~w~----~D~ef~~~~~RF~~if~~~~~~~~~~~~~~~~~~~~~~i~~i~V~GNHDIG~ 112 (193)
T cd08164 44 KPDAVVVLGDLFSSQWI----DDEEFAKRADRYRRRFFGRNDWQVGNISLAARTFEDGKTPLINIAGNHDVGY 112 (193)
T ss_pred CCCEEEEeccccCCCcc----cHHHHHHHHHHHHHHhcCCcccccccccccccccccCCceEEEECCcccCCC
Confidence 69999999999987432 2356666666666655221 11 112589999999999985
No 64
>COG4186 Predicted phosphoesterase or phosphohydrolase [General function prediction only]
Probab=94.52 E-value=0.088 Score=48.64 Aligned_cols=102 Identities=17% Similarity=0.287 Sum_probs=59.3
Q ss_pred eEEEEeCCccCcHhHH--HH------H-HHHHhcccCCCCCCeEEEEEccCCCCCCCCCCcchhHHHHHHHHHHHHHHcC
Q 009713 285 MFVILSDIWLDNEEVM--GK------L-EVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAH 355 (528)
Q Consensus 285 ~~v~lSdv~ld~~~~l--e~------L-~~ll~~~~~~~~~P~~~Vl~G~F~s~~~~~~~~~~~~~~~~f~~la~~l~~~ 355 (528)
++-|+||.|++.+.++ .+ . ..+++.+++.-.+-+.+-..|||+++... .. ++..+++..
T Consensus 5 mmyfisDtHfgh~nvi~~~pfsn~~ehd~vil~N~nntv~p~D~lwhLGDl~~~~n~-----~~-------~a~~IlerL 72 (186)
T COG4186 5 MMYFISDTHFGHKNVISMRPFSNPDEHDEVILSNWNNTVGPDDVLWHLGDLSSGANR-----ER-------AAGLILERL 72 (186)
T ss_pred EEEEecccccCCcceeecCCCCCHHHHhHHHHHhHHhcCCccceEEEecccccccch-----hh-------HHHHHHHHc
Confidence 5779999999988653 11 2 23455555532345789999999986421 11 222333322
Q ss_pred CCCCCceeEEEecCCCCCCCCCCCCCCCCchhhHHHHhhhCCceEEecCCeEEEEccEEEEEEe
Q 009713 356 PRLKEHSRFLFIPGPDDAGPSTVLPRCALPKYLTEELQKYIPNAIFSSNPCRIKFYTQEIVFFR 419 (528)
Q Consensus 356 p~l~~~~~~v~VPG~~Dp~~~~~lPqpplp~~~~~~l~~~~~n~~~~sNPcri~~~~~eIvi~r 419 (528)
+ -..+|||||||+.. ..+ -..|..... .+ .+|.++|..+++.+
T Consensus 73 n-----Grkhlv~GNhDk~~-~~~-----~~~~~~svq-~f---------~~ie~dg~~~~LsH 115 (186)
T COG4186 73 N-----GRKHLVPGNHDKCH-PMY-----RHAYFDSVQ-AF---------QRIEWDGEDVYLSH 115 (186)
T ss_pred C-----CcEEEeeCCCCCCc-ccc-----cchhhHHHH-HH---------HheeECCeEEEEEe
Confidence 2 35599999999985 221 122222221 22 35667888887765
No 65
>cd00839 MPP_PAPs purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain. Purple acid phosphatases (PAPs) belong to a diverse family of binuclear metallohydrolases that have been identified and characterized in plants, animals, and fungi. PAPs contain a binuclear metal center and their characteristic pink or purple color derives from a charge-transfer transition between a tyrosine residue and a chromophoric ferric ion within the binuclear center. PAPs catalyze the hydrolysis of a wide range of activated phosphoric acid mono- and di-esters and anhydrides. PAPs are distinguished from the other phosphatases by their insensitivity to L-(+) tartrate inhibition and are therefore also known as tartrate resistant acid phosphatases (TRAPs). While only a few copies of PAP-like genes are present in mammalian and fungal genomes, multiple copies are present in plant genomes. PAPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diver
Probab=94.42 E-value=0.11 Score=52.77 Aligned_cols=79 Identities=10% Similarity=0.132 Sum_probs=47.8
Q ss_pred CCeEEEEeCCccCcHhHHHHHHHHHhcccCCCCCCeEEEEEccCCCCCCCCCCcchhHHHHHHHHHHHHHHcCCCCCCce
Q 009713 283 NDMFVILSDIWLDNEEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHS 362 (528)
Q Consensus 283 ~~~~v~lSdv~ld~~~~le~L~~ll~~~~~~~~~P~~~Vl~G~F~s~~~~~~~~~~~~~~~~f~~la~~l~~~p~l~~~~ 362 (528)
..+|+++||.+.+.....+-+..+.+. . ..|+.+|++||.+..... .+..++...++.+..+. ...
T Consensus 4 ~~~f~v~gD~~~~~~~~~~~~~~l~~~--~--~~~d~vl~~GDl~~~~~~---~~~~~~~~~~~~~~~~~-------~~~ 69 (294)
T cd00839 4 PFKFAVFGDMGQNTNNSTNTLDHLEKE--L--GNYDAILHVGDLAYADGY---NNGSRWDTFMRQIEPLA-------SYV 69 (294)
T ss_pred cEEEEEEEECCCCCCCcHHHHHHHHhc--c--CCccEEEEcCchhhhcCC---ccchhHHHHHHHHHHHH-------hcC
Confidence 457999999996433333334444332 1 379999999999854221 11133443334333332 346
Q ss_pred eEEEecCCCCCCC
Q 009713 363 RFLFIPGPDDAGP 375 (528)
Q Consensus 363 ~~v~VPG~~Dp~~ 375 (528)
.+..+|||||-..
T Consensus 70 P~~~~~GNHD~~~ 82 (294)
T cd00839 70 PYMVTPGNHEADY 82 (294)
T ss_pred CcEEcCccccccc
Confidence 8999999999863
No 66
>PF03100 CcmE: CcmE; InterPro: IPR004329 CcmE is the product of one of a cluster of Ccm genes that are necessary for cytochrome c biosynthesis in eubacteria. Expression of these proteins is induced when the organisms are grown under anaerobic conditions with nitrate or nitrite as the final electron acceptor.; GO: 0017003 protein-heme linkage, 0017004 cytochrome complex assembly, 0005886 plasma membrane; PDB: 1SR3_A 2KCT_A 1J6Q_A 1LM0_A.
Probab=94.40 E-value=0.3 Score=44.07 Aligned_cols=62 Identities=27% Similarity=0.416 Sum_probs=45.1
Q ss_pred CcE-EEEEEEEE-----cCCC---cEEEEeCCcEEEEEeccccccceeeccCeEEEEEEEEeeCCeEEEEEec
Q 009713 178 GRR-WVMGVISQ-----LEDG---HFYLEDLAASVEIDLSKAKITTGFFTENTIVVAEGEMLVDGIFQVITCG 241 (528)
Q Consensus 178 g~~-~vlGml~~-----~~~g---~~~LED~sg~V~Ldls~~~~~~g~f~~G~vV~veG~~~~~g~F~V~~i~ 241 (528)
|+. .|-|++.. .+++ +|.|.|....+++.-+...+ .+|.+|.-|+|+|.+..+|.|++++|.
T Consensus 50 ~~~vrv~G~V~~gSv~~~~~~~~~~F~i~D~~~~i~V~Y~G~~P--d~F~eg~~VVv~G~~~~~g~F~A~~lL 120 (131)
T PF03100_consen 50 GRKVRVGGLVVEGSVEYDPDGNTLTFTITDGGKEIPVVYTGPLP--DLFREGQGVVVEGRLGEDGVFEATELL 120 (131)
T ss_dssp TSEEEEEEEEECTTEEE-TTSSEEEEEEE-SS-EEEEEEES--C--TT--TTSEEEEEEEECCTSEEEEEEEE
T ss_pred CceEEEeeEEccCCEEEcCCCCEEEEEEEECCcEEEEEECCCCC--ccccCCCeEEEEEEECCCCEEEEEEEE
Confidence 455 69999863 2223 47899999999998887654 488999999999999779999999994
No 67
>cd00838 MPP_superfamily metallophosphatase superfamily, metallophosphatase domain. Metallophosphatases (MPPs), also known as metallophosphoesterases, phosphodiesterases (PDEs), binuclear metallophosphoesterases, and dimetal-containing phosphoesterases (DMPs), represent a diverse superfamily of enzymes with a conserved domain containing an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. This superfamily includes: the phosphoprotein phosphatases (PPPs), Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive me
Probab=94.37 E-value=0.078 Score=45.52 Aligned_cols=69 Identities=19% Similarity=0.186 Sum_probs=41.6
Q ss_pred EEEeCCccCcHhHHHHHHHHHhcccCCCCCCeEEEEEccCCCCCCCCCCcchhHHHHHHHHHHHHHHcCCCCCCceeEEE
Q 009713 287 VILSDIWLDNEEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHSRFLF 366 (528)
Q Consensus 287 v~lSdv~ld~~~~le~L~~ll~~~~~~~~~P~~~Vl~G~F~s~~~~~~~~~~~~~~~~f~~la~~l~~~p~l~~~~~~v~ 366 (528)
+++||+|.+.....+... ..... ...|..+|++||+++..... ....+.. +.. ......++++
T Consensus 1 ~~~gD~h~~~~~~~~~~~--~~~~~--~~~~~~vi~~GD~~~~~~~~---~~~~~~~----~~~------~~~~~~~~~~ 63 (131)
T cd00838 1 AVISDIHGNLEALEAVLE--AALAA--AEKPDFVLVLGDLVGDGPDP---EEVLAAA----LAL------LLLLGIPVYV 63 (131)
T ss_pred CeeecccCCccchHHHHH--HHHhc--ccCCCEEEECCcccCCCCCc---hHHHHHH----HHH------hhcCCCCEEE
Confidence 367999988776654432 11111 13799999999999864321 1111111 111 1235689999
Q ss_pred ecCCCC
Q 009713 367 IPGPDD 372 (528)
Q Consensus 367 VPG~~D 372 (528)
++||||
T Consensus 64 ~~GNHD 69 (131)
T cd00838 64 VPGNHD 69 (131)
T ss_pred eCCCce
Confidence 999999
No 68
>KOG3662 consensus Cell division control protein/predicted DNA repair exonuclease [Replication, recombination and repair]
Probab=93.70 E-value=0.39 Score=51.19 Aligned_cols=87 Identities=13% Similarity=0.306 Sum_probs=53.4
Q ss_pred cCCeEEEEeCCccCc----HhH---HH------HHHHHHhcccCCCCCCeEEEEEccCCCC-CCCCCCcchhHHHHHHHH
Q 009713 282 ANDMFVILSDIWLDN----EEV---MG------KLEVVLDGFESVEVVPSLFVFMGNFCSH-PCNLSFHSFSSLRLQFGK 347 (528)
Q Consensus 282 ~~~~~v~lSdv~ld~----~~~---le------~L~~ll~~~~~~~~~P~~~Vl~G~F~s~-~~~~~~~~~~~~~~~f~~ 347 (528)
...++.+++|+++=+ +.. ++ .|++.|.. .-.--.|++++++||..|. .. . .-+++++..+.
T Consensus 47 n~~ki~~vaDPQilg~~~~~~~~~~Ldk~~~D~~lrr~f~~-~~~~lkPdvvffLGDLfDeG~~-~---~~eEf~~~~~R 121 (410)
T KOG3662|consen 47 NSTKILLVADPQILGNWPKKFLVSWLDKYGNDWYLRRSFDM-SQWRLKPDVVFFLGDLFDEGQW-A---GDEEFKKRYER 121 (410)
T ss_pred CceEEEEecCchhcCCCCCccccchHHhhhhHHHHHHHHHH-HHhccCCCEEEEeccccccCcc-C---ChHHHHHHHHH
Confidence 345677889998644 111 11 12222221 1111369999999999994 32 2 13566666666
Q ss_pred HHHHHHcCCCCCCceeEEEecCCCCCCCCC
Q 009713 348 LGQMIAAHPRLKEHSRFLFIPGPDDAGPST 377 (528)
Q Consensus 348 la~~l~~~p~l~~~~~~v~VPG~~Dp~~~~ 377 (528)
+-++.. ...+.+++-+|||||.|-..
T Consensus 122 fkkIf~----~k~~~~~~~i~GNhDIGf~~ 147 (410)
T KOG3662|consen 122 FKKIFG----RKGNIKVIYIAGNHDIGFGN 147 (410)
T ss_pred HHHhhC----CCCCCeeEEeCCcccccccc
Confidence 655553 22578999999999998644
No 69
>cd07378 MPP_ACP5 Homo sapiens acid phosphatase 5 and related proteins, metallophosphatase domain. Acid phosphatase 5 (ACP5) removes the mannose 6-phosphate recognition marker from lysosomal proteins. The exact site of dephosphorylation is not clear. Evidence suggests dephosphorylation may take place in a prelysosomal compartment as well as in the lysosome. ACP5 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site ma
Probab=93.17 E-value=0.24 Score=49.89 Aligned_cols=82 Identities=10% Similarity=0.052 Sum_probs=45.5
Q ss_pred eEEEEeCCccCcHhHHHHHHHHHhcccCCCCCCeEEEEEccCCCCCCCCCCcchhHHHHHHHHHHHHHHcCCCCCCceeE
Q 009713 285 MFVILSDIWLDNEEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHSRF 364 (528)
Q Consensus 285 ~~v~lSdv~ld~~~~le~L~~ll~~~~~~~~~P~~~Vl~G~F~s~~~~~~~~~~~~~~~~f~~la~~l~~~p~l~~~~~~ 364 (528)
+|+++||.-.......+.+.+.+..+.+. ..|+.+|++||.+...... ......+.+.|+++...+ ...+++
T Consensus 2 ~f~~~gD~g~~~~~~~~~~~~~~~~~~~~-~~~dfvv~~GD~~y~~g~~-~~~~~~~~~~~~~~~~~~------~~~~P~ 73 (277)
T cd07378 2 RFLALGDWGGGGTAGQKAVAKAMAKVAAE-LGPDFILSLGDNFYDDGVG-SVDDPRFETTFEDVYSAP------SLQVPW 73 (277)
T ss_pred eEEEEeecCCCCCHHHHHHHHHHHHHHHh-cCCCEEEeCCCccccCCCC-CCcchHHHHHHHHHccch------hhcCCe
Confidence 47888888654122223333333333322 3799999999987432211 111234444454432222 135799
Q ss_pred EEecCCCCCC
Q 009713 365 LFIPGPDDAG 374 (528)
Q Consensus 365 v~VPG~~Dp~ 374 (528)
+.+|||||-.
T Consensus 74 ~~v~GNHD~~ 83 (277)
T cd07378 74 YLVLGNHDYS 83 (277)
T ss_pred EEecCCcccC
Confidence 9999999986
No 70
>COG1408 Predicted phosphohydrolases [General function prediction only]
Probab=92.86 E-value=0.22 Score=51.00 Aligned_cols=78 Identities=21% Similarity=0.237 Sum_probs=51.8
Q ss_pred CeEEEEeCCccCcHhHHHHHHHHHhcccCCCCCCeEEEEEccCCCCCCCCCCcchhHHHHHHHHHHHHHHcCCCCCCcee
Q 009713 284 DMFVILSDIWLDNEEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHSR 363 (528)
Q Consensus 284 ~~~v~lSdv~ld~~~~le~L~~ll~~~~~~~~~P~~~Vl~G~F~s~~~~~~~~~~~~~~~~f~~la~~l~~~p~l~~~~~ 363 (528)
.++|.+||+|..... +...+++....+. .|+.+|+.||+++... . ..+ +.+++.|+ .+.+.-.
T Consensus 45 ~~iv~lSDlH~~~~~--~~~~~~~~~i~~~--~~DlivltGD~~~~~~---~---~~~----~~~~~~L~---~L~~~~g 107 (284)
T COG1408 45 LKIVQLSDLHSLPFR--EEKLALLIAIANE--LPDLIVLTGDYVDGDR---P---PGV----AALALFLA---KLKAPLG 107 (284)
T ss_pred eEEEEeehhhhchhh--HHHHHHHHHHHhc--CCCEEEEEeeeecCCC---C---CCH----HHHHHHHH---hhhccCC
Confidence 459999999988776 4555555555443 6899999999999611 0 111 23344443 2444568
Q ss_pred EEEecCCCCCCCCCC
Q 009713 364 FLFIPGPDDAGPSTV 378 (528)
Q Consensus 364 ~v~VPG~~Dp~~~~~ 378 (528)
++.|.||||=+....
T Consensus 108 v~av~GNHd~~~~~~ 122 (284)
T COG1408 108 VFAVLGNHDYGVDRS 122 (284)
T ss_pred EEEEecccccccccc
Confidence 999999999875433
No 71
>cd07425 MPP_Shelphs Shewanella-like phosphatases, metallophosphatase domain. This family includes bacterial, eukaryotic, and archeal proteins orthologous to the Shewanella cold-active protein-tyrosine phosphatase, CAPTPase. CAPTPase is an uncharacterized protein that belongs to the Shelph (Shewanella-like phosphatase) family of PPP (phosphoprotein phosphatases). The PPP family is one of two known protein phosphatase families specific for serine and threonine. In addition to Shelps, the PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metal
Probab=92.76 E-value=0.48 Score=46.11 Aligned_cols=74 Identities=19% Similarity=0.217 Sum_probs=41.9
Q ss_pred EEEeCCccCcHhHHHHHHHHHhccc--CC----CCCCeEEEEEccCCCCCCCCCCcchhHHHHHHHHHHHHHHcCCCCCC
Q 009713 287 VILSDIWLDNEEVMGKLEVVLDGFE--SV----EVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKE 360 (528)
Q Consensus 287 v~lSdv~ld~~~~le~L~~ll~~~~--~~----~~~P~~~Vl~G~F~s~~~~~~~~~~~~~~~~f~~la~~l~~~p~l~~ 360 (528)
+++||+|=+ ++.|+.++.... +. ...++.+|++||.++.- ..+.+ .-+.+.+|..... ..
T Consensus 1 ~vi~DIHG~----~~~l~~ll~~~~~~~~~~~~~~~~d~lv~lGD~vdrG----~~~~~-vl~~l~~l~~~~~-----~~ 66 (208)
T cd07425 1 VAIGDLHGD----LDAFREILKGAGVIDSNDHWIGGSTHLVQLGDIFDRG----PDVIE-ILWLLYKLEQEAA-----KA 66 (208)
T ss_pred CEEeCccCC----HHHHHHHHHHCCCCCccccccCCCcEEEEECCCcCCC----cCHHH-HHHHHHHHHHHHH-----hc
Confidence 367999943 345566665432 10 12578999999999862 11111 1122222222111 12
Q ss_pred ceeEEEecCCCCCC
Q 009713 361 HSRFLFIPGPDDAG 374 (528)
Q Consensus 361 ~~~~v~VPG~~Dp~ 374 (528)
..++++++||||-.
T Consensus 67 ~~~v~~l~GNHE~~ 80 (208)
T cd07425 67 GGKVHFLLGNHELM 80 (208)
T ss_pred CCeEEEeeCCCcHH
Confidence 46899999999974
No 72
>PRK13150 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=92.74 E-value=0.39 Score=44.69 Aligned_cols=62 Identities=24% Similarity=0.258 Sum_probs=48.7
Q ss_pred CcE-EEEEEEEE-----cCCC---cEEEEeCCcEEEEEeccccccceeeccCeEEEEEEEEeeCCeEEEEEec
Q 009713 178 GRR-WVMGVISQ-----LEDG---HFYLEDLAASVEIDLSKAKITTGFFTENTIVVAEGEMLVDGIFQVITCG 241 (528)
Q Consensus 178 g~~-~vlGml~~-----~~~g---~~~LED~sg~V~Ldls~~~~~~g~f~~G~vV~veG~~~~~g~F~V~~i~ 241 (528)
|+. .|-||+.. ..+| .|.|.|..+.|.+.-+...+ -+|.+|+=|+|+|.+..+|+|++++|.
T Consensus 57 g~~iRvgG~V~~GSv~r~~~~~~v~F~vtD~~~~v~V~Y~GilP--DlFrEG~gVVveG~~~~~g~F~A~evL 127 (159)
T PRK13150 57 GQRLRVGGMVMPGSVRRDPDSLKVNFSLYDAEGSVTVSYEGILP--DLFREGQGVVVQGTLEKGNHVLAHEVL 127 (159)
T ss_pred CCEEEEeeEEeCCcEEECCCCcEEEEEEEcCCcEEEEEEeccCC--ccccCCCeEEEEEEECCCCEEEEeEEE
Confidence 454 57888863 2333 47899999999998776543 588999999999999778999999993
No 73
>PRK00166 apaH diadenosine tetraphosphatase; Reviewed
Probab=92.61 E-value=0.27 Score=50.07 Aligned_cols=66 Identities=12% Similarity=0.184 Sum_probs=41.2
Q ss_pred EEEEeCCccCcHhHHHHHHHHHhcccCCCCCCeEEEEEccCCCCCCCCCCcchhHHHHHHHHHHHHHHcCCCCCCceeEE
Q 009713 286 FVILSDIWLDNEEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHSRFL 365 (528)
Q Consensus 286 ~v~lSdv~ld~~~~le~L~~ll~~~~~~~~~P~~~Vl~G~F~s~~~~~~~~~~~~~~~~f~~la~~l~~~p~l~~~~~~v 365 (528)
++++||+| + .+++|..++....-. ..++.+|++||+++.- +++.+ ..++|.+. ...++
T Consensus 3 ~~vIGDIH-G---~~~~l~~ll~~~~~~-~~~D~li~lGDlVdrG----p~s~~--------vl~~l~~l-----~~~~~ 60 (275)
T PRK00166 3 TYAIGDIQ-G---CYDELQRLLEKIDFD-PAKDTLWLVGDLVNRG----PDSLE--------VLRFVKSL-----GDSAV 60 (275)
T ss_pred EEEEEccC-C---CHHHHHHHHHhcCCC-CCCCEEEEeCCccCCC----cCHHH--------HHHHHHhc-----CCCeE
Confidence 67889999 3 345566666654211 2478999999999851 12221 22233322 23688
Q ss_pred EecCCCCC
Q 009713 366 FIPGPDDA 373 (528)
Q Consensus 366 ~VPG~~Dp 373 (528)
+|.||||-
T Consensus 61 ~VlGNHD~ 68 (275)
T PRK00166 61 TVLGNHDL 68 (275)
T ss_pred EEecChhH
Confidence 99999997
No 74
>cd00845 MPP_UshA_N_like Escherichia coli UshA-like family, N-terminal metallophosphatase domain. This family includes the bacterial enzyme UshA, and related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich
Probab=92.49 E-value=2.4 Score=41.88 Aligned_cols=43 Identities=12% Similarity=0.054 Sum_probs=30.6
Q ss_pred CCCcEEEecCCCCcce--EEeCCeEEEcCCCCCCCcEEE--EEECCC
Q 009713 478 PTPHAIVLADKSEQKA--FKYTGITCFNPGSFSSDSTFV--AYRPCT 520 (528)
Q Consensus 478 p~Pdvlil~d~~~~f~--~~y~gc~~vNpGsf~~~~sf~--~y~p~~ 520 (528)
|--|+++-||.|.... ..++|+.++-+|+....-..+ .++..+
T Consensus 193 ~giDlvlggH~H~~~~~~~~~~~~~v~~~g~~~~~~~~~~l~~~~~~ 239 (252)
T cd00845 193 PGIDVILGGHTHHLLEEPEVVNGTLIVQAGKYGKYVGEIDLELDDDT 239 (252)
T ss_pred CCccEEEcCCcCcccCCCcccCCEEEEeCChhHceEEEEEEEEECCC
Confidence 6789999999995543 368999999999886544444 344444
No 75
>COG2332 CcmE Cytochrome c-type biogenesis protein CcmE [Posttranslational modification, protein turnover, chaperones]
Probab=91.94 E-value=0.47 Score=43.44 Aligned_cols=63 Identities=27% Similarity=0.409 Sum_probs=47.5
Q ss_pred CCCcE-EEEEEEEE---c--CCC---cEEEEeCCcEEEEEeccccccceeeccCeEEEEEEEEeeCCeEEEEEe
Q 009713 176 QTGRR-WVMGVISQ---L--EDG---HFYLEDLAASVEIDLSKAKITTGFFTENTIVVAEGEMLVDGIFQVITC 240 (528)
Q Consensus 176 ~~g~~-~vlGml~~---~--~~g---~~~LED~sg~V~Ldls~~~~~~g~f~~G~vV~veG~~~~~g~F~V~~i 240 (528)
..|++ -+-||+-. . .++ +|.++|...+|++.-....+ .+|-+|+-|.++|.+..+|+|++.++
T Consensus 49 ~~G~rlR~GGlV~~GSv~R~~~~~~v~F~vtD~~~~v~V~Y~GiLP--DLFREGQgVVa~G~~~~~~~f~A~~v 120 (153)
T COG2332 49 ETGQRLRLGGLVEAGSVQRDPGSLKVSFVVTDGNKSVTVSYEGILP--DLFREGQGVVAEGQLQGGGVFEAKEV 120 (153)
T ss_pred cCCcEEEEeeeEeeceEEecCCCcEEEEEEecCCceEEEEEeccCc--hhhhcCCeEEEEEEecCCCEEEeeeh
Confidence 33666 57787753 2 232 36788888888887665543 58899999999999976689999999
No 76
>PRK13165 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=91.90 E-value=0.58 Score=43.65 Aligned_cols=62 Identities=23% Similarity=0.260 Sum_probs=48.4
Q ss_pred CcE-EEEEEEEE-----cCCC---cEEEEeCCcEEEEEeccccccceeeccCeEEEEEEEEeeCCeEEEEEec
Q 009713 178 GRR-WVMGVISQ-----LEDG---HFYLEDLAASVEIDLSKAKITTGFFTENTIVVAEGEMLVDGIFQVITCG 241 (528)
Q Consensus 178 g~~-~vlGml~~-----~~~g---~~~LED~sg~V~Ldls~~~~~~g~f~~G~vV~veG~~~~~g~F~V~~i~ 241 (528)
|+. .|-||+-. .+++ .|.|.|....|++.-+...+ -+|.+|+=|+|+|.+..+|+|++++|.
T Consensus 57 g~~iRvgG~V~~GSi~r~~~~l~v~F~vtD~~~~v~V~Y~GilP--DlFrEG~gVVveG~~~~~g~F~A~~vL 127 (160)
T PRK13165 57 GQRLRVGGMVMPGSVQRDPNSLKVSFTLYDAGGSVTVTYEGILP--DLFREGQGIVAQGVLEEGNHIEAKEVL 127 (160)
T ss_pred CCEEEEeeEEeCCcEEECCCCeEEEEEEEcCCeEEEEEEcccCC--ccccCCCeEEEEEEECCCCeEEEEEEE
Confidence 444 58888863 2333 47889999999998776543 588999999999999777999999993
No 77
>cd07397 MPP_DevT Myxococcus xanthus DevT and related proteins, metallophosphatase domain. DevT is a component in the C-signal response pathway in Myxococcus xanthus that stimulates the developmentally regulated expression of the FruA response regulator protein and is required for methylation of FrzCD during fruiting body formation. DevT mutants having an in-frame deletion in the devT gene, display delayed aggregation and a cell autonomous sporulation defect. DevT belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomy
Probab=91.89 E-value=0.49 Score=47.16 Aligned_cols=187 Identities=18% Similarity=0.177 Sum_probs=93.4
Q ss_pred eEEEEeCCccCcHhHHHHHHHHHhcccCCCCCCeEEEEEccCCCCCCCCCCcchhHHHHHHHHHHHHHHcCCCCCCceeE
Q 009713 285 MFVILSDIWLDNEEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHSRF 364 (528)
Q Consensus 285 ~~v~lSdv~ld~~~~le~L~~ll~~~~~~~~~P~~~Vl~G~F~s~~~~~~~~~~~~~~~~f~~la~~l~~~p~l~~~~~~ 364 (528)
+|+++||+|.+-.. ...+.+. . ..|+.+|++||+++.. . ++.+.|.+++ .++
T Consensus 2 rIa~isDiHg~~~~---~~~~~l~---~--~~pD~Vl~~GDi~~~~-----------~----~~~~~l~~l~-----~p~ 53 (238)
T cd07397 2 RIAIVGDVHGQWDL---EDIKALH---L--LQPDLVLFVGDFGNES-----------V----QLVRAISSLP-----LPK 53 (238)
T ss_pred EEEEEecCCCCchH---HHHHHHh---c--cCCCEEEECCCCCcCh-----------H----HHHHHHHhCC-----CCe
Confidence 58899999965322 1112222 2 2599999999997421 1 2333344332 368
Q ss_pred EEecCCCCCCCCCCCCCCCCchhhHHHHhhhCCceEEecCCeEEEEc--cEEEEEEe------hHHHHH-HhhcccCCCC
Q 009713 365 LFIPGPDDAGPSTVLPRCALPKYLTEELQKYIPNAIFSSNPCRIKFY--TQEIVFFR------QDLLYR-MRRSCLIPPS 435 (528)
Q Consensus 365 v~VPG~~Dp~~~~~lPqpplp~~~~~~l~~~~~n~~~~sNPcri~~~--~~eIvi~r------dDl~~~-l~r~~i~~p~ 435 (528)
++|+||||-+... .+.-.. +.+.+.+. .+.+.++.-+ ++.+. +..|+-.| ....++ ..|+.+-..+
T Consensus 54 ~~V~GNHD~~~~~-~~~~k~-~~l~~~L~-~lg~~~l~~~--~~~~~~~~~~vvG~R~~~~~g~~~~~~~~vr~~fgi~s 128 (238)
T cd07397 54 AVILGNHDAWYDA-TFRKKG-DRVQEQLE-LLGDLHCGWG--RLDFPPLPLSVVGGRPFSAGGGFWLSKKAVKAVYGVIS 128 (238)
T ss_pred EEEcCCCcccccc-cccchH-HHHHHHHH-HhCCcEEeec--ccccCCCCeEEEeeCCccCCCccccCHHHHHHHhCCCC
Confidence 9999999987522 121111 12333332 3344444332 22222 24444455 233333 4455442111
Q ss_pred CCCCCChHHHHHHHHh----cC-----CCCCCCCCCC-----ccccCCCC------Ccc-------cccCCCcEEEecCC
Q 009713 436 REETDDPFEHLVATIT----HQ-----SHLCPLPLTV-----QPIIWNYD------HSL-------HLYPTPHAIVLADK 488 (528)
Q Consensus 436 ~~~~~d~~~~l~ktiL----~Q-----~hL~Pl~~~~-----~pi~w~~d------~~L-------~L~p~Pdvlil~d~ 488 (528)
-.+.++++++.+- .. +|-.|.-... ..-.|..- .-| +.-..|.+.+.||.
T Consensus 129 ---~~eA~~~ive~~~~~~~~~~~VliaH~~~~G~g~~~~~~cg~d~~~~~~~~G~~~l~~ai~~~~~~~~~~l~~fGH~ 205 (238)
T cd07397 129 ---LEESAQRIIAAAKKAPPDLPLILLAHNGPSGLGSDAEDPCGRDWKPPGGDWGDPDLALAISQIQQGRQVPLVVFGHM 205 (238)
T ss_pred ---HHHHHHHHHHHhhhcCCCCCeEEEeCcCCcCCCcccccccccccCCcCCCCCCHHHHHHHHHHhccCCCCEEEeCCc
Confidence 1144556666662 11 2444443321 11234321 112 22245899999999
Q ss_pred CCc--ce--------EEeCCeEEEcCCCC
Q 009713 489 SEQ--KA--------FKYTGITCFNPGSF 507 (528)
Q Consensus 489 ~~~--f~--------~~y~gc~~vNpGsf 507 (528)
|.+ +. ..-+|+..+|.++.
T Consensus 206 H~~l~~~~~~r~~~~~~~~gt~y~N~a~~ 234 (238)
T cd07397 206 HHRLRRGKGLRNMIAVDREGTVYLNAASV 234 (238)
T ss_pred cCcccccccccceeeecCCCeEEEecccc
Confidence 854 32 23378999998864
No 78
>cd00844 MPP_Dbr1_N Dbr1 RNA lariat debranching enzyme, N-terminal metallophosphatase domain. Dbr1 is an RNA lariat debranching enzyme that hydrolyzes 2'-5' phosphodiester bonds at the branch points of excised intron lariats. This alignment model represents the N-terminal metallophosphatase domain of Dbr1. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal s
Probab=91.67 E-value=1.9 Score=43.55 Aligned_cols=118 Identities=16% Similarity=0.209 Sum_probs=61.8
Q ss_pred EEEEeCCccCcHhHHHHHHHHHhcccCC-CCCCeEEEEEccCCCCCCCCCCcch---hHHHHHHHHHHHHHHcCCCCCCc
Q 009713 286 FVILSDIWLDNEEVMGKLEVVLDGFESV-EVVPSLFVFMGNFCSHPCNLSFHSF---SSLRLQFGKLGQMIAAHPRLKEH 361 (528)
Q Consensus 286 ~v~lSdv~ld~~~~le~L~~ll~~~~~~-~~~P~~~Vl~G~F~s~~~~~~~~~~---~~~~~~f~~la~~l~~~p~l~~~ 361 (528)
|+|.+|+|=+ ++.+.+.++.++.. ..+++++|+||||.......+.++. ..|+ ....+..++..... ..
T Consensus 1 i~v~Gd~HG~----~~~~~~~~~~~~~~~~~~~D~lI~~GDf~~~~~~~d~~~~~~p~k~~-~~~~f~~~~~g~~~--~p 73 (262)
T cd00844 1 IAVEGCCHGE----LDKIYETLEKIEKKEGTKVDLLICCGDFQAVRNEADLKCMAVPPKYR-KMGDFYKYYSGEKK--AP 73 (262)
T ss_pred CEEEecCCcc----HHHHHHHHHHHHHhcCCCCcEEEEcCCCCCcCCcchhhhhccchhhh-hhhhHHHHhcCCcc--CC
Confidence 3577898842 22222222222211 1368999999999643211100000 1122 12233344443211 24
Q ss_pred eeEEEecCCCCCCCCCCCCCCCCchhhHHHHhhhCCceEEecCCeEEEEccEEEEEEe
Q 009713 362 SRFLFIPGPDDAGPSTVLPRCALPKYLTEELQKYIPNAIFSSNPCRIKFYTQEIVFFR 419 (528)
Q Consensus 362 ~~~v~VPG~~Dp~~~~~lPqpplp~~~~~~l~~~~~n~~~~sNPcri~~~~~eIvi~r 419 (528)
...+||+||||... .|- .++. . -...+|+++.-+-..+.++|..|+-.+
T Consensus 74 ~~t~fi~GNHE~~~--~l~--~l~~----g-g~v~~Ni~~Lg~~~v~~~~GlrIaGLs 122 (262)
T cd00844 74 ILTIFIGGNHEASN--YLW--ELPY----G-GWVAPNIYYLGYAGVVNFGGLRIAGLS 122 (262)
T ss_pred eeEEEECCCCCCHH--HHH--hhcC----C-CeecCcEEEecCCCEEEECCeEEEEec
Confidence 66799999999642 221 1110 0 012478988888888889999988655
No 79
>PRK13159 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=91.34 E-value=0.73 Score=42.74 Aligned_cols=58 Identities=22% Similarity=0.354 Sum_probs=46.0
Q ss_pred EEEEEEE-----EcCCC---cEEEEeCCcEEEEEeccccccceeeccCeEEEEEEEEeeCCeEEEEEec
Q 009713 181 WVMGVIS-----QLEDG---HFYLEDLAASVEIDLSKAKITTGFFTENTIVVAEGEMLVDGIFQVITCG 241 (528)
Q Consensus 181 ~vlGml~-----~~~~g---~~~LED~sg~V~Ldls~~~~~~g~f~~G~vV~veG~~~~~g~F~V~~i~ 241 (528)
.+-||+- ...++ +|.+.|....|++.-+...+ -+|-+|+=|+++|.+. +|+|+++++.
T Consensus 55 RlGG~V~~GSv~r~~~~~~v~F~vtD~~~~v~V~Y~GilP--DlFrEGqgVVaeG~~~-~g~F~A~~vL 120 (155)
T PRK13159 55 RLGGMVKAGSIQRAADSLKVSFTVIDKNAATQVEYTGILP--DLFRDNQSVIANGRMQ-GGRFVANEVL 120 (155)
T ss_pred EEccEEecCcEEEcCCCcEEEEEEEcCCcEEEEEEccCCC--ccccCCCeEEEEEEEc-CCEEEEeEEE
Confidence 5777765 22333 47899999999998776543 5889999999999995 7999999993
No 80
>cd00144 MPP_PPP_family phosphoprotein phosphatases of the metallophosphatase superfamily, metallophosphatase domain. The PPP (phosphoprotein phosphatase) family is one of two known protein phosphatase families specific for serine and threonine. This family includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate
Probab=90.57 E-value=0.74 Score=44.62 Aligned_cols=68 Identities=15% Similarity=0.223 Sum_probs=42.6
Q ss_pred EEeCCccCcHhHHHHHHHHHhcccCCCCCCeEEEEEccCCCCCCCCCCcchhHHHHHHHHHHHHHHcCCCCCCceeEEEe
Q 009713 288 ILSDIWLDNEEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHSRFLFI 367 (528)
Q Consensus 288 ~lSdv~ld~~~~le~L~~ll~~~~~~~~~P~~~Vl~G~F~s~~~~~~~~~~~~~~~~f~~la~~l~~~p~l~~~~~~v~V 367 (528)
++||+| ++ ++.|..+++.+.. ..+..+|++||+++.-- .+ .+.++.+..+. .. ...+++|
T Consensus 2 ~igDiH-g~---~~~l~~~l~~~~~--~~~d~li~lGD~vdrg~----~~----~~~l~~l~~~~----~~--~~~~~~l 61 (225)
T cd00144 2 VIGDIH-GC---LDDLLRLLEKIGF--PPNDKLIFLGDYVDRGP----DS----VEVIDLLLALK----IL--PDNVILL 61 (225)
T ss_pred EEeCCC-CC---HHHHHHHHHHhCC--CCCCEEEEECCEeCCCC----Cc----HHHHHHHHHhc----CC--CCcEEEE
Confidence 679999 44 4566667766543 25889999999998621 11 12222222211 11 3578999
Q ss_pred cCCCCCCC
Q 009713 368 PGPDDAGP 375 (528)
Q Consensus 368 PG~~Dp~~ 375 (528)
.||||-..
T Consensus 62 ~GNHe~~~ 69 (225)
T cd00144 62 RGNHEDML 69 (225)
T ss_pred ccCchhhh
Confidence 99999853
No 81
>PRK11439 pphA serine/threonine protein phosphatase 1; Provisional
Probab=90.20 E-value=0.68 Score=45.32 Aligned_cols=28 Identities=4% Similarity=0.116 Sum_probs=24.0
Q ss_pred cEEEecCCCCcceEEeCCeEEEcCCCCC
Q 009713 481 HAIVLADKSEQKAFKYTGITCFNPGSFS 508 (528)
Q Consensus 481 dvlil~d~~~~f~~~y~gc~~vNpGsf~ 508 (528)
+.+|.||++.++....+++..||+|+..
T Consensus 181 ~~vv~GHT~~~~~~~~~~~i~IDtGav~ 208 (218)
T PRK11439 181 DHFWFGHTPLRHRVDIGNLHYIDTGAVF 208 (218)
T ss_pred CEEEECCccCCCccccCCEEEEECCCCC
Confidence 5799999987777777889999999975
No 82
>cd07422 MPP_ApaH Escherichia coli ApaH and related proteins, metallophosphatase domain. ApaH (also known as symmetrically cleaving Ap4A hydrolase and bis(5'nucleosyl)-tetraphosphatase) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases that hydrolyzes the nucleotide-signaling molecule diadenosine tetraphosphate (Ap(4)A) into two ADP and also hydrolyzes Ap(5)A, Gp(4)G, and other extending compounds. Null mutations in apaH result in high intracellular levels of Ap(4)A which correlate with multiple phenotypes, including a decreased expression of catabolite-repressible genes, a reduction in the expression of flagellar operons, and an increased sensitivity to UV and heat. Ap4A hydrolase is important in responding to heat shock and oxidative stress via regulating the concentration of Ap4A in bacteria. Ap4A hydrolase is also thought to play a role in siderophore production, but the mechanism by which ApaH interacts with siderophore pathwa
Probab=89.99 E-value=0.77 Score=46.32 Aligned_cols=66 Identities=15% Similarity=0.226 Sum_probs=41.5
Q ss_pred EEEeCCccCcHhHHHHHHHHHhcccCCCCCCeEEEEEccCCCCCCCCCCcchhHHHHHHHHHHHHHHcCCCCCCceeEEE
Q 009713 287 VILSDIWLDNEEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHSRFLF 366 (528)
Q Consensus 287 v~lSdv~ld~~~~le~L~~ll~~~~~~~~~P~~~Vl~G~F~s~~~~~~~~~~~~~~~~f~~la~~l~~~p~l~~~~~~v~ 366 (528)
.++||+| + .+++|+.+++.+.-. ...+.+|++||+++.- +++.+.+ ++|.+ +. ..+++
T Consensus 2 yvIGDIH-G---~~~~L~~LL~~i~~~-~~~D~Li~lGDlVdRG----p~s~evl--------~~l~~---l~--~~v~~ 59 (257)
T cd07422 2 YAIGDIQ-G---CYDELQRLLEKINFD-PAKDRLWLVGDLVNRG----PDSLETL--------RFVKS---LG--DSAKT 59 (257)
T ss_pred EEEECCC-C---CHHHHHHHHHhcCCC-CCCCEEEEecCcCCCC----cCHHHHH--------HHHHh---cC--CCeEE
Confidence 4789998 3 456677777765421 2468999999999852 1222222 22222 11 36889
Q ss_pred ecCCCCCC
Q 009713 367 IPGPDDAG 374 (528)
Q Consensus 367 VPG~~Dp~ 374 (528)
|.||||..
T Consensus 60 VlGNHD~~ 67 (257)
T cd07422 60 VLGNHDLH 67 (257)
T ss_pred EcCCchHH
Confidence 99999973
No 83
>PF01336 tRNA_anti-codon: OB-fold nucleic acid binding domain; InterPro: IPR004365 The OB-fold (oligonucleotide/oligosaccharide-binding fold) is found in all three kingdoms and its common architecture presents a binding face that has adapted to bind different ligands. The OB-fold is a five/six-stranded closed beta-barrel formed by 70-80 amino acid residues. The strands are connected by loops of varying length which form the functional appendages of the protein. The majority of OB-fold proteins use the same face for ligand binding or as an active site. Different OB-fold proteins use this 'fold-related binding face' to, variously, bind oligosaccharides, oligonucleotides, proteins, metal ions and catalytic substrates. This entry contains OB-fold domains that bind to nucleic acids []. It includes the anti-codon binding domain of lysyl, aspartyl, and asparaginyl-tRNA synthetases (See IPR004364 from INTERPRO). Aminoacyl-tRNA synthetases catalyse the addition of an amino acid to the appropriate tRNA molecule 6.1.1 from EC. This domain is found in RecG helicase involved in DNA repair. Replication factor A is a heterotrimeric complex, that contains a subunit in this family [, ]. This domain is also found at the C terminus of bacterial DNA polymerase III alpha chain.; GO: 0003676 nucleic acid binding; PDB: 1BBU_A 1KRS_A 1BBW_A 1KRT_A 1EQR_B 1IL2_B 1C0A_A 3KFU_A 1EOV_A 1ASY_A ....
Probab=89.69 E-value=0.67 Score=36.50 Aligned_cols=51 Identities=24% Similarity=0.322 Sum_probs=36.7
Q ss_pred EEEEEEEEc-CCC-c---EEEEeCCcEEEEEecc-c-cccceeeccCeEEEEEEEEee
Q 009713 181 WVMGVISQL-EDG-H---FYLEDLAASVEIDLSK-A-KITTGFFTENTIVVAEGEMLV 231 (528)
Q Consensus 181 ~vlGml~~~-~~g-~---~~LED~sg~V~Ldls~-~-~~~~g~f~~G~vV~veG~~~~ 231 (528)
.|.|+|+.. ..+ + +.|+|.+|+|++.+-. . ......+.+|++|.|+|....
T Consensus 2 ~v~G~V~~~~~~~~~~~~~~l~D~tg~i~~~~~~~~~~~~~~~l~~g~~v~v~G~v~~ 59 (75)
T PF01336_consen 2 TVEGRVTSIRRSGGKIVFFTLEDGTGSIQVVFFNEEYERFREKLKEGDIVRVRGKVKR 59 (75)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEETTEEEEEEEETHHHHHHHHTS-TTSEEEEEEEEEE
T ss_pred EEEEEEEEEEcCCCCEEEEEEEECCccEEEEEccHHhhHHhhcCCCCeEEEEEEEEEE
Confidence 578888876 332 2 5799999999998765 1 111356689999999999853
No 84
>PLN02533 probable purple acid phosphatase
Probab=89.15 E-value=0.71 Score=50.03 Aligned_cols=73 Identities=11% Similarity=0.223 Sum_probs=45.3
Q ss_pred CCeEEEEeCCccCcHhHHHHHHHHHhcccCCCCCCeEEEEEccCCCCCCCCCCcchhHHHHHHHHHHHHHHcCCCCCCce
Q 009713 283 NDMFVILSDIWLDNEEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHS 362 (528)
Q Consensus 283 ~~~~v~lSdv~ld~~~~le~L~~ll~~~~~~~~~P~~~Vl~G~F~s~~~~~~~~~~~~~~~~f~~la~~l~~~p~l~~~~ 362 (528)
..+|+++||.....-. ...++.+.. ..|+.++++||++... .+...++++.++++. +....
T Consensus 139 ~~~f~v~GDlG~~~~~-----~~tl~~i~~--~~pD~vl~~GDl~y~~---------~~~~~wd~f~~~i~~---l~s~~ 199 (427)
T PLN02533 139 PIKFAVSGDLGTSEWT-----KSTLEHVSK--WDYDVFILPGDLSYAN---------FYQPLWDTFGRLVQP---LASQR 199 (427)
T ss_pred CeEEEEEEeCCCCccc-----HHHHHHHHh--cCCCEEEEcCcccccc---------chHHHHHHHHHHhhh---HhhcC
Confidence 3579999998653311 122222233 2699999999997431 133344455555542 34567
Q ss_pred eEEEecCCCCCC
Q 009713 363 RFLFIPGPDDAG 374 (528)
Q Consensus 363 ~~v~VPG~~Dp~ 374 (528)
.+..+|||||..
T Consensus 200 P~m~~~GNHE~~ 211 (427)
T PLN02533 200 PWMVTHGNHELE 211 (427)
T ss_pred ceEEeCcccccc
Confidence 999999999975
No 85
>cd07421 MPP_Rhilphs Rhilph phosphatases, metallophosphatase domain. Rhilphs (Rhizobiales/ Rhodobacterales/ Rhodospirillaceae-like phosphatases) are a phylogenetically distinct group of PPP (phosphoprotein phosphatases), found only in land plants. They are named for their close relationship to to PPP phosphatases from alpha-Proteobacteria, including Rhizobiales, Rhodobacterales and Rhodospirillaceae. The PPP (phosphoprotein phosphatase) family, to which the Rhilphs belong, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central rol
Probab=88.87 E-value=1.5 Score=45.06 Aligned_cols=77 Identities=21% Similarity=0.429 Sum_probs=41.5
Q ss_pred eEEEEeCCccCcHhHHHHHHHHHhc-ccCCCCCCeEEEEEccCCCCCCCCCCcchhHHHHHHHHHHHHHHcCCCCCCcee
Q 009713 285 MFVILSDIWLDNEEVMGKLEVVLDG-FESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHSR 363 (528)
Q Consensus 285 ~~v~lSdv~ld~~~~le~L~~ll~~-~~~~~~~P~~~Vl~G~F~s~~~~~~~~~~~~~~~~f~~la~~l~~~p~l~~~~~ 363 (528)
.++++||+| +....++.+.+.+.. ..........+|++||+++.- +++ ++.++-|..+..++|. ..
T Consensus 3 ~iyaIGDIH-G~~d~L~~lL~~I~~d~~~~~~~~~~iVfLGDyVDRG----PdS----~eVld~L~~l~~~~~~----~~ 69 (304)
T cd07421 3 VVICVGDIH-GYISKLNNLWLNLQSALGPSDFASALVIFLGDYCDRG----PET----RKVIDFLISLPEKHPK----QR 69 (304)
T ss_pred eEEEEEecc-CCHHHHHHHHHHhhhhcCcCcCCCcEEEEeCCcCCCC----CCH----HHHHHHHHHhhhcccc----cc
Confidence 477889999 444444433332221 111101245799999999962 111 2223333333333331 25
Q ss_pred EEEecCCCCCC
Q 009713 364 FLFIPGPDDAG 374 (528)
Q Consensus 364 ~v~VPG~~Dp~ 374 (528)
++++.||||-.
T Consensus 70 vv~LrGNHE~~ 80 (304)
T cd07421 70 HVFLCGNHDFA 80 (304)
T ss_pred eEEEecCChHH
Confidence 78999999974
No 86
>cd07413 MPP_PA3087 Pseudomonas aeruginosa PA3087 and related proteins, metallophosphatase domain. PA3087 is an uncharacterized protein from Pseudomonas aeruginosa with a metallophosphatase domain that belongs to the phosphoprotein phosphatase (PPP) family. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of
Probab=87.80 E-value=0.81 Score=44.96 Aligned_cols=69 Identities=19% Similarity=0.220 Sum_probs=39.8
Q ss_pred EEEeCCccCcHhHHHHHHHHHhcccCCC------CCCeEEEEEccCCCCCCCCCCcchhHHHHHHHHHHHHHHcCCCCCC
Q 009713 287 VILSDIWLDNEEVMGKLEVVLDGFESVE------VVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKE 360 (528)
Q Consensus 287 v~lSdv~ld~~~~le~L~~ll~~~~~~~------~~P~~~Vl~G~F~s~~~~~~~~~~~~~~~~f~~la~~l~~~p~l~~ 360 (528)
.++||+| +. ++.|..+++...-.. .....+|++||.+|.- +++. +..+.+.++. +
T Consensus 2 ~vIGDIH-G~---~~~L~~lL~~i~~~~~~~~~~~~~d~lvflGD~IDRG----p~S~----~vl~~l~~l~-------~ 62 (222)
T cd07413 2 DFIGDIH-GH---AEKLVVLLHKLGYQELSGVYRHPERQVVFLGDLIDRG----PEIR----ELLEIVKSMV-------D 62 (222)
T ss_pred EEEEecc-CC---HHHHHHHHHHcCCCccccccCCCCCEEEEeCcccCCC----CCHH----HHHHHHHHhh-------c
Confidence 4789999 33 445555665542210 1356899999999862 1222 2222232222 1
Q ss_pred ceeEEEecCCCCCC
Q 009713 361 HSRFLFIPGPDDAG 374 (528)
Q Consensus 361 ~~~~v~VPG~~Dp~ 374 (528)
...+++|-||||-.
T Consensus 63 ~~~~~~l~GNHE~~ 76 (222)
T cd07413 63 AGHALAVMGNHEFN 76 (222)
T ss_pred CCCEEEEEccCcHH
Confidence 23688899999964
No 87
>cd07408 MPP_SA0022_N Staphylococcus aureus SA0022 and related proteins, N-terminal metallophosphatase domain. SA0022 is an uncharacterized Staphylococcus aureus UshA-like protein with two putative domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. SA0022 also contains a putative C-terminal cell wall anchor domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet
Probab=87.32 E-value=10 Score=37.94 Aligned_cols=50 Identities=8% Similarity=0.091 Sum_probs=35.8
Q ss_pred ccCCCcEEEecCCCCcceE---EeCCeEEEcCCCCCCCcEEE--EEECCCCeEEe
Q 009713 476 LYPTPHAIVLADKSEQKAF---KYTGITCFNPGSFSSDSTFV--AYRPCTQEVEF 525 (528)
Q Consensus 476 L~p~Pdvlil~d~~~~f~~---~y~gc~~vNpGsf~~~~sf~--~y~p~~~~~e~ 525 (528)
-.|-.|+++-||.|..+.. .++|+.++.+|++...-..+ .+++.++++..
T Consensus 198 ~~~giDvIigGH~H~~~~~~~~~~~~~~ivq~g~~g~~vg~l~l~~~~~~~~~~~ 252 (257)
T cd07408 198 NVTGIDLIIDGHSHTTIEIGKKDGNNVLLTQTGAYLANIGEVTLVFDTTTGTIKL 252 (257)
T ss_pred hCCCceEEEeCCCcccccCcccccCCeEEEcCChHHceEEEEEEEEECCCceEEE
Confidence 3477899999999966543 47899999999885444333 55666666554
No 88
>cd00842 MPP_ASMase acid sphingomyelinase and related proteins, metallophosphatase domain. Acid sphingomyelinase (ASMase) is a ubiquitously expressed phosphodiesterase which hydrolyzes sphingomyelin in acid pH conditions to form ceramide, a bioactive second messenger, as part of the sphingomyelin signaling pathway. ASMase is localized at the noncytosolic leaflet of biomembranes (for example the luminal leaflet of endosomes, lysosomes and phagosomes, and the extracellular leaflet of plasma membranes). ASMase-deficient humans develop Niemann-Pick disease. This disease is characterized by lysosomal storage of sphingomyelin in all tissues. Although ASMase-deficient mice are resistant to stress-induced apoptosis, they have greater susceptibility to bacterial infection. The latter correlates with defective phagolysosomal fusion and antibacterial killing activity in ASMase-deficient macrophages. ASMase belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but
Probab=85.88 E-value=2.2 Score=43.51 Aligned_cols=84 Identities=14% Similarity=0.216 Sum_probs=44.3
Q ss_pred eCCccCcHhHHHHHHHHHhcccCCCCCCeEEEEEccCCCCCCCCCCcchhHHHH--HHHHHHHHHHcCCCCCCceeEEEe
Q 009713 290 SDIWLDNEEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRL--QFGKLGQMIAAHPRLKEHSRFLFI 367 (528)
Q Consensus 290 Sdv~ld~~~~le~L~~ll~~~~~~~~~P~~~Vl~G~F~s~~~~~~~~~~~~~~~--~f~~la~~l~~~p~l~~~~~~v~V 367 (528)
|+..=|+|.. -++.+++........|+.+|++||.+...... ....... .-+.+.+.+.+ ....++++.+
T Consensus 44 G~~~CD~p~~--l~~s~l~~i~~~~~~~dfii~tGD~v~h~~~~---~~~~~~~~~~~~~~~~~l~~---~~~~~pv~~~ 115 (296)
T cd00842 44 GDYGCDSPWR--LVESALEAIKKNHPKPDFILWTGDLVRHDVDE---QTPETLVLISISNLTSLLKK---AFPDTPVYPA 115 (296)
T ss_pred cCcCCCCcHH--HHHHHHHHHHHhCCCCCEEEEcCCCCCCCchh---hchhHHHHHHHHHHHHHHHH---hCCCCCEEEc
Confidence 3443455532 23333333332213699999999999764321 1111111 12233333432 1235789999
Q ss_pred cCCCCCCCCCCCCC
Q 009713 368 PGPDDAGPSTVLPR 381 (528)
Q Consensus 368 PG~~Dp~~~~~lPq 381 (528)
+||||......++.
T Consensus 116 ~GNHD~~p~~~~~~ 129 (296)
T cd00842 116 LGNHDSYPVNQFPP 129 (296)
T ss_pred CCCCCCCcccccCC
Confidence 99999976555543
No 89
>cd04489 ExoVII_LU_OBF ExoVII_LU_OBF: A subfamily of OB folds corresponding to the N-terminal OB-fold domain of Escherichia coli exodeoxyribonuclease VII (ExoVII) large subunit. E. coli ExoVII is composed of two non-identical subunits. E. coli ExoVII is a single-strand-specific exonuclease which degrades ssDNA from both 3-prime and 5-prime ends. ExoVII plays a role in methyl-directed mismatch repair in vivo. ExoVII may also guard the genome from mutagenesis by removing excess ssDNA, since the build up of ssDNA would lead to SOS induction and PolIV-dependent mutagenesis.
Probab=84.57 E-value=4.8 Score=32.08 Aligned_cols=60 Identities=30% Similarity=0.350 Sum_probs=40.4
Q ss_pred EEEEEEEEc---CCCc--EEEEeCCcEEEEEec-cccc-cceeeccCeEEEEEEEEeeC---C--eEEEEEe
Q 009713 181 WVMGVISQL---EDGH--FYLEDLAASVEIDLS-KAKI-TTGFFTENTIVVAEGEMLVD---G--IFQVITC 240 (528)
Q Consensus 181 ~vlGml~~~---~~g~--~~LED~sg~V~Ldls-~~~~-~~g~f~~G~vV~veG~~~~~---g--~F~V~~i 240 (528)
++.|+++.. +.|. +.|+|.+|++++.+= +... ....+.+|.+|+++|..... | .+.|.+|
T Consensus 3 ~v~g~v~~i~~tk~g~~~~~L~D~~~~i~~~~f~~~~~~~~~~l~~g~~v~v~g~v~~~~~~~~~~l~v~~i 74 (78)
T cd04489 3 WVEGEISNLKRPSSGHLYFTLKDEDASIRCVMWRSNARRLGFPLEEGMEVLVRGKVSFYEPRGGYQLIVEEI 74 (78)
T ss_pred EEEEEEecCEECCCcEEEEEEEeCCeEEEEEEEcchhhhCCCCCCCCCEEEEEEEEEEECCCCEEEEEEEEE
Confidence 577888754 3452 479999999988643 2111 13567899999999987522 3 3666665
No 90
>cd07406 MPP_CG11883_N Drosophila melanogaster CG11883 and related proteins, N-terminal metallophosphatase domain. CG11883 is an uncharacterized Drosophila melanogaster UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at th
Probab=83.78 E-value=20 Score=35.79 Aligned_cols=44 Identities=18% Similarity=0.141 Sum_probs=32.2
Q ss_pred CCCcEEEecCCCCcceEEeCCeEEEcCCCCCCCcE--EEEEECCCC
Q 009713 478 PTPHAIVLADKSEQKAFKYTGITCFNPGSFSSDST--FVAYRPCTQ 521 (528)
Q Consensus 478 p~Pdvlil~d~~~~f~~~y~gc~~vNpGsf~~~~s--f~~y~p~~~ 521 (528)
|=-|+++-||.|..+...++|+.++-+|++...-. =+.+++.++
T Consensus 194 ~~iD~IlgGH~H~~~~~~~~~t~vv~~g~~g~~vg~l~l~~~~~~~ 239 (257)
T cd07406 194 PEIDLILGGHDHEYILVQVGGTPIVKSGSDFRTVYIITLTYDTKTR 239 (257)
T ss_pred CCCceEEecccceeEeeeECCEEEEeCCcCcceEEEEEEEEECCCC
Confidence 55689999999987777889999999998753322 235555554
No 91
>TIGR00668 apaH bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase.
Probab=83.06 E-value=2.6 Score=43.03 Aligned_cols=66 Identities=15% Similarity=0.223 Sum_probs=40.9
Q ss_pred EEEEeCCccCcHhHHHHHHHHHhcccCCCCCCeEEEEEccCCCCCCCCCCcchhHHHHHHHHHHHHHHcCCCCCCceeEE
Q 009713 286 FVILSDIWLDNEEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHSRFL 365 (528)
Q Consensus 286 ~v~lSdv~ld~~~~le~L~~ll~~~~~~~~~P~~~Vl~G~F~s~~~~~~~~~~~~~~~~f~~la~~l~~~p~l~~~~~~v 365 (528)
+.++||+| -.+++|..+|+...-. ...+.++++||+++.- +++.+.++ ++.+.. ..++
T Consensus 3 ~YvIGDIH----Gc~daL~~LL~~i~f~-~~~D~l~~lGDlVdRG----P~slevL~--------~l~~l~-----~~~~ 60 (279)
T TIGR00668 3 TYLIGDLH----GCYDELQALLERVEFD-PGQDTLWLTGDLVARG----PGSLEVLR--------YVKSLG-----DAVR 60 (279)
T ss_pred EEEEEccc----CCHHHHHHHHHHhCcC-CCCCEEEEeCCccCCC----CCHHHHHH--------HHHhcC-----CCeE
Confidence 45789998 3456777777765421 2357899999999851 12222221 222211 2467
Q ss_pred EecCCCCC
Q 009713 366 FIPGPDDA 373 (528)
Q Consensus 366 ~VPG~~Dp 373 (528)
+|-||||-
T Consensus 61 ~VlGNHD~ 68 (279)
T TIGR00668 61 LVLGNHDL 68 (279)
T ss_pred EEEChhHH
Confidence 89999996
No 92
>PRK06920 dnaE DNA polymerase III DnaE; Reviewed
Probab=82.94 E-value=13 Score=45.10 Aligned_cols=73 Identities=12% Similarity=0.186 Sum_probs=48.9
Q ss_pred eecccccCCCC-cEEEEEEEEEc-----CCCc----EEEEeCCcEEEEEecccccc--ceeeccCeEEEEEEEEee-CC-
Q 009713 168 STIQSLVGQTG-RRWVMGVISQL-----EDGH----FYLEDLAASVEIDLSKAKIT--TGFFTENTIVVAEGEMLV-DG- 233 (528)
Q Consensus 168 t~I~~Llg~~g-~~~vlGml~~~-----~~g~----~~LED~sg~V~Ldls~~~~~--~g~f~~G~vV~veG~~~~-~g- 233 (528)
+++..|....| ++.|.|||+.. +.|+ +.|||.+|.+++.+-...+. ..++.+|.+|+|+|.... ++
T Consensus 933 ~~~~~l~~~~~~~v~v~g~i~~~~~~~tk~g~~maf~~leD~tg~~e~~vFp~~y~~~~~~l~~~~~~~v~G~v~~~~~~ 1012 (1107)
T PRK06920 933 PSLAQAMRHKKKVQRAIVYITSVKVIRTKKGQKMAFITFCDQNDEMEAVVFPETYIHFSDKLQEGAIVLVDGTIELRNHK 1012 (1107)
T ss_pred cCHHHHhhcCCCEEEEEEEEEEeEeecCCCCCeEEEEEEeeCCCcEEEEECHHHHHHHHHHhccCCEEEEEEEEEecCCc
Confidence 45555532234 45899999864 4554 47999999999986422221 356689999999999963 33
Q ss_pred -eEEEEEe
Q 009713 234 -IFQVITC 240 (528)
Q Consensus 234 -~F~V~~i 240 (528)
.+.|.+|
T Consensus 1013 ~~~~~~~i 1020 (1107)
T PRK06920 1013 LQWIVNGL 1020 (1107)
T ss_pred EEEEEeec
Confidence 4666666
No 93
>cd04478 RPA2_DBD_D RPA2_DBD_D: A subfamily of OB folds corresponding to the OB fold of the central ssDNA-binding domain (DBD)-D of human RPA2 (also called RPA32). RPA2 is a subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The major DNA binding activity of RPA is associated with RPA1 DBD-A and DBD-B; RPA2 DBD-D is a weak ssDNA-binding domain. RPA2 DBD-D is also involved in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. N-terminal to human RPA2 DBD-D is a domain containing all the known phosphorylation sites of RPA. Human RPA2 is phosphorylated in a cell cycle dependent manner in response to DNA dam
Probab=82.18 E-value=7.8 Score=32.31 Aligned_cols=55 Identities=18% Similarity=0.259 Sum_probs=38.6
Q ss_pred EEEEEEEEEcCC-C---cEEEEeCCcEEEEEeccccc-----cceeeccCeEEEEEEEEee-CCe
Q 009713 180 RWVMGVISQLED-G---HFYLEDLAASVEIDLSKAKI-----TTGFFTENTIVVAEGEMLV-DGI 234 (528)
Q Consensus 180 ~~vlGml~~~~~-g---~~~LED~sg~V~Ldls~~~~-----~~g~f~~G~vV~veG~~~~-~g~ 234 (528)
+.++|++...++ + .|.|+|.||+|+...=.... ....+.+|.+|-|.|.... +|.
T Consensus 2 v~~vG~V~~~~~~~~~~~~tL~D~TG~I~~~~W~~~~~~~~~~~~~~~~g~~v~v~G~v~~~~g~ 66 (95)
T cd04478 2 VTLVGVVRNVEEQSTNITYTIDDGTGTIEVRQWLDDDNDDSSEVEPIEEGTYVRVFGNLKSFQGK 66 (95)
T ss_pred EEEEEEEEeeeEcccEEEEEEECCCCcEEEEEeCCCCCcccccccccccCCEEEEEEEEcccCCe
Confidence 468999987653 3 36799999998875432211 2345679999999999854 344
No 94
>PF04076 BOF: Bacterial OB fold (BOF) protein; InterPro: IPR005220 Proteins in this entry have an OB-fold fold (oligonucleotide/oligosaccharide binding motif). Analysis of the predicted nucleotide-binding site of the OB-fold suggests that they lack nucleic acid-binding properties. They contain an predicted N-terminal signal peptide which indicates that they localise to the periplasm where they may function to bind proteins, small molecules, or other typical OB-fold ligands. As hypothesised for the distantly related OB-fold containing bacterial enterotoxins, the loss of nucleotide-binding function and the rapid evolution of the OB-fold ligand-binding site may be associated with the presence of members in mobile genetic elements and their potential role in bacterial pathogenicity [].; PDB: 1NNX_A.
Probab=82.04 E-value=7.1 Score=33.82 Aligned_cols=66 Identities=17% Similarity=0.261 Sum_probs=42.5
Q ss_pred ceeecccccC-CCCcE-EEEEEEEE-cCCCcEEEEeCCcEEEEEeccccccceeeccCeEEEEEEEEee
Q 009713 166 EISTIQSLVG-QTGRR-WVMGVISQ-LEDGHFYLEDLAASVEIDLSKAKITTGFFTENTIVVAEGEMLV 231 (528)
Q Consensus 166 ~it~I~~Llg-~~g~~-~vlGml~~-~~~g~~~LED~sg~V~Ldls~~~~~~g~f~~G~vV~veG~~~~ 231 (528)
.+++++.++. .+++. .+-|-|.+ ..+.+|...|.||+|++.|.+.....--+.|+.-|-+.|+...
T Consensus 21 ~~~TV~~a~~~~Dd~~V~L~G~Iv~~l~~d~Y~F~D~TG~I~VeId~~~w~g~~vt~~~~Vri~GeVDk 89 (103)
T PF04076_consen 21 TVTTVAQAKNAKDDTPVTLEGNIVKQLGDDKYLFRDATGEIEVEIDDDVWRGQTVTPDDKVRISGEVDK 89 (103)
T ss_dssp ----HHHHTTS-SSEEEEEEEEEEEEEETTEEEEEETTEEEEEE--GGGSTT----TTSEEEEEEEEEE
T ss_pred CeEeHHHHhhCcCCCeEEEEEEEEEEecCCEEEEECCCCcEEEEEChhhcCCcccCCCCEEEEEEEEeC
Confidence 3455555542 44544 78998875 4677899999999999999876554445689999999999853
No 95
>PRK05629 hypothetical protein; Validated
Probab=81.45 E-value=3.7 Score=42.46 Aligned_cols=61 Identities=13% Similarity=0.066 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHhcCCccCHHHHHHHHHhhccCCCChHHHHHHHHHHHhcccCCCcceeeHHHHHHHHH
Q 009713 4 QTRKKIQKKMKIRGYGLRMDALDEILSFVNRFPDAEDEAIDLLLDQFEHESSLKSSIIDKESVNRVTS 71 (528)
Q Consensus 4 ~~r~~i~~~fk~~gl~l~~~al~~l~~~~~~~~~~~~~~~~~~~~~i~k~~~~~~~~vd~~~l~~~~~ 71 (528)
++.++|.+.|+++|++|.++|+++|++.++.. +..+-.++.|..-..+.-||.+.|++++.
T Consensus 130 ~l~~wi~~~~~~~g~~i~~~A~~~L~~~~g~d-------l~~l~~EleKL~~~~~~~It~e~V~~~v~ 190 (318)
T PRK05629 130 ERPGWVTQEFKNHGVRPTPDVVHALLEGVGSD-------LRELASAISQLVEDTQGNVTVEKVRAYYV 190 (318)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHCcc-------HHHHHHHHHHHHhcCCCCcCHHHHHHHhC
Confidence 67889999999999999999999999987642 22233333332101123589988887764
No 96
>PRK07914 hypothetical protein; Reviewed
Probab=79.44 E-value=4.6 Score=41.83 Aligned_cols=61 Identities=15% Similarity=0.157 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHhcCCccCHHHHHHHHHhhccCCCChHHHHHHHHHHHhcccCCCcceeeHHHHHHHHH
Q 009713 4 QTRKKIQKKMKIRGYGLRMDALDEILSFVNRFPDAEDEAIDLLLDQFEHESSLKSSIIDKESVNRVTS 71 (528)
Q Consensus 4 ~~r~~i~~~fk~~gl~l~~~al~~l~~~~~~~~~~~~~~~~~~~~~i~k~~~~~~~~vd~~~l~~~~~ 71 (528)
++.++|.+.++++|++|.++|++.|++.++.. +..+-.++.|..-..+..||.+.|++++.
T Consensus 132 ~l~~wi~~~a~~~g~~i~~~A~~~L~~~~g~d-------l~~l~~EleKL~~~~~~~It~e~V~~~v~ 192 (320)
T PRK07914 132 ERADFVRKEFRSLRVKVDDDTVTALLDAVGSD-------LRELASACSQLVADTGGAVDAAAVRRYHS 192 (320)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHCcc-------HHHHHHHHHHHhcCCCCCcCHHHHHHHcC
Confidence 56788999999999999999999999988642 23333344443211234589888887764
No 97
>TIGR00156 conserved hypothetical protein TIGR00156. As of the last revision, this family consists only of two proteins from Escherichia coli and one from the related species Haemophilus influenzae.
Probab=78.76 E-value=7.4 Score=34.97 Aligned_cols=65 Identities=14% Similarity=0.168 Sum_probs=50.4
Q ss_pred ceeecccccC-CCCcE-EEEEEEEEc-CCCcEEEEeCCcEEEEEeccccccceeeccCeEEEEEEEEe
Q 009713 166 EISTIQSLVG-QTGRR-WVMGVISQL-EDGHFYLEDLAASVEIDLSKAKITTGFFTENTIVVAEGEML 230 (528)
Q Consensus 166 ~it~I~~Llg-~~g~~-~vlGml~~~-~~g~~~LED~sg~V~Ldls~~~~~~g~f~~G~vV~veG~~~ 230 (528)
.+++++.++. +++.. .+=|-|.+. .+.+|...|.+|+|.++|.+.....--+.|+.-|-+.|+..
T Consensus 44 ~~~tV~~a~~~~Ddt~V~L~G~Iv~~l~~d~Y~F~D~TG~I~VeId~~~w~G~~v~p~d~V~I~GeVD 111 (126)
T TIGR00156 44 KKMTVDFAKSMHDGASVTLRGNIISHIGDDRYVFRDKSGEINVVIPAAVWNGREVQPKDMVNISGSLD 111 (126)
T ss_pred ceEeHHHHhhCCCCCEEEEEEEEEEEeCCceEEEECCCCCEEEEECHHHcCCCcCCCCCEEEEEEEEC
Confidence 4677777763 45544 788988865 55679999999999999987665433558999999999984
No 98
>PRK08487 DNA polymerase III subunit delta; Validated
Probab=78.70 E-value=3.8 Score=42.62 Aligned_cols=61 Identities=15% Similarity=0.257 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHhcCCccCHHHHHHHHHhhccCCCChHHHHHHHHHHHhcccCCCcceeeHHHHHHHHHH
Q 009713 4 QTRKKIQKKMKIRGYGLRMDALDEILSFVNRFPDAEDEAIDLLLDQFEHESSLKSSIIDKESVNRVTSV 72 (528)
Q Consensus 4 ~~r~~i~~~fk~~gl~l~~~al~~l~~~~~~~~~~~~~~~~~~~~~i~k~~~~~~~~vd~~~l~~~~~~ 72 (528)
++.+.|.+.++++|++|.++|+++|++.++. + +..+-.|+.|.. +=...|+.+.|++++..
T Consensus 139 ~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~----d---l~~l~~ELeKL~-ly~~~It~edV~~~v~~ 199 (328)
T PRK08487 139 EALELLQERAKELGLDIDQNALNHLYFIHNE----D---LALAANELEKLA-ILNEPITLKDIQELVFG 199 (328)
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCc----H---HHHHHHHHHHHH-HhcCCCCHHHHHHHhcc
Confidence 5788999999999999999999999998754 2 344555555543 22225899998887743
No 99
>cd04483 hOBFC1_like hOBFC1_like: A subfamily of OB folds similar to that found in human OB fold containing protein 1 (hOBFC1). Members of this group belong to the Replication protein A subunit 2 (RPA2) family of OB folds. RPA is a nuclear ssDNA binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The OB fold domain of RPA2 has dual roles in ssDNA binding and trimerization.
Probab=78.27 E-value=11 Score=31.72 Aligned_cols=50 Identities=12% Similarity=0.157 Sum_probs=34.7
Q ss_pred EEEEEEEcCC----CcEEEEeCCcEEEEEeccccc----------------------cceeeccCeEEEEEEEEee
Q 009713 182 VMGVISQLED----GHFYLEDLAASVEIDLSKAKI----------------------TTGFFTENTIVVAEGEMLV 231 (528)
Q Consensus 182 vlGml~~~~~----g~~~LED~sg~V~Ldls~~~~----------------------~~g~f~~G~vV~veG~~~~ 231 (528)
|+|++....+ =.|.|+|.||+|+..+=.... ....+.+|++|-|+|....
T Consensus 2 ivG~V~sv~~~~~~~~~tLdDgTG~Ie~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~G~vvrV~G~i~~ 77 (92)
T cd04483 2 ILGTVVSRRERETFYSFGVDDGTGVVNCVCWKNLSYAEVSSRSDAARILKSALMALKQAKVLEIGDLLRVRGSIRT 77 (92)
T ss_pred eEEEEEEEEecCCeEEEEEecCCceEEEEEEcCcCcccccccccccccccccccccccccccCCCCEEEEEEEEec
Confidence 6888876543 236899999999886532211 1234689999999999853
No 100
>COG3111 Periplasmic protein with OB-fold [Function unknown]
Probab=78.12 E-value=6 Score=35.19 Aligned_cols=66 Identities=15% Similarity=0.259 Sum_probs=50.6
Q ss_pred cceeecccccC-CCCc-EEEEEEEEE-cCCCcEEEEeCCcEEEEEeccccccceeeccCeEEEEEEEEe
Q 009713 165 CEISTIQSLVG-QTGR-RWVMGVISQ-LEDGHFYLEDLAASVEIDLSKAKITTGFFTENTIVVAEGEML 230 (528)
Q Consensus 165 ~~it~I~~Llg-~~g~-~~vlGml~~-~~~g~~~LED~sg~V~Ldls~~~~~~g~f~~G~vV~veG~~~ 230 (528)
-+.++++..+. +++. +.+-|-|.+ ..++.|.--|.||.|.++|++.....-.+.|.+-|-++|+..
T Consensus 43 ~~~~TV~~Ak~~~Dda~V~l~GnIv~qi~~D~y~FrD~sGeI~VeIdd~~w~g~tv~P~dkV~I~GevD 111 (128)
T COG3111 43 AKVTTVDQAKTLHDDAWVSLEGNIVRQIGDDRYVFRDASGEINVDIDDKVWNGQTVTPKDKVRIQGEVD 111 (128)
T ss_pred cceeEHHHhhccccCCeEEEEeeEEEeeCCceEEEEcCCccEEEEecccccCCcccCcccEEEEEeEEc
Confidence 34556655443 4444 478887764 677889999999999999998776656668999999999984
No 101
>PRK05907 hypothetical protein; Provisional
Probab=77.39 E-value=6.5 Score=40.82 Aligned_cols=64 Identities=9% Similarity=0.102 Sum_probs=47.7
Q ss_pred hHHHHHHHHHHHhcCCccCHHHHHHHHHhhccCCCChHHHHHHHHHHHhccc--CCCcceeeHHHHHHHHHH
Q 009713 3 GQTRKKIQKKMKIRGYGLRMDALDEILSFVNRFPDAEDEAIDLLLDQFEHES--SLKSSIIDKESVNRVTSV 72 (528)
Q Consensus 3 ~~~r~~i~~~fk~~gl~l~~~al~~l~~~~~~~~~~~~~~~~~~~~~i~k~~--~~~~~~vd~~~l~~~~~~ 72 (528)
.+++++|.+.++++|++|.++|+++|.+..+. . .+..+..+|.|.. ...+..||.+.|++++..
T Consensus 137 ~~L~~Wi~~~~~~~g~~i~~~a~~~L~~~~~~---~---nL~~l~~EleKL~ly~g~~~~It~e~V~~lv~~ 202 (311)
T PRK05907 137 KRIAQLLIQRAKELGISCSLGLASLFVSKFPQ---T---GLFEILSEFQKLLCQMGKKESLEASDIQSFVVK 202 (311)
T ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHHccC---C---CHHHHHHHHHHHHHhcCCCCeECHHHHHHHhcC
Confidence 37899999999999999999999999986521 1 1555666666643 134567899998887643
No 102
>smart00156 PP2Ac Protein phosphatase 2A homologues, catalytic domain. Large family of serine/threonine phosphatases, that includes PP1, PP2A and PP2B (calcineurin) family members.
Probab=76.77 E-value=11 Score=38.32 Aligned_cols=73 Identities=16% Similarity=0.230 Sum_probs=44.8
Q ss_pred CCeEEEEeCCccCcHhHHHHHHHHHhcccCCCCCCeEEEEEccCCCCCCCCCCcchhHHHHHHHHHHHHHHcCCCCCCce
Q 009713 283 NDMFVILSDIWLDNEEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHS 362 (528)
Q Consensus 283 ~~~~v~lSdv~ld~~~~le~L~~ll~~~~~~~~~P~~~Vl~G~F~s~~~~~~~~~~~~~~~~f~~la~~l~~~p~l~~~~ 362 (528)
+..++++||+| ++ ++.|..+|..+.. .....+|++||++|.-- .+. +.+..+..+...+| .
T Consensus 27 ~~~i~vvGDiH-G~---~~~l~~ll~~~~~--~~~~~~vfLGD~VDrG~----~s~----e~l~~l~~lk~~~p-----~ 87 (271)
T smart00156 27 SAPVTVCGDIH-GQ---FDDLLRLFDLNGP--PPDTNYVFLGDYVDRGP----FSI----EVILLLFALKILYP-----N 87 (271)
T ss_pred CCCEEEEEeCc-CC---HHHHHHHHHHcCC--CCCceEEEeCCccCCCC----ChH----HHHHHHHHHHhcCC-----C
Confidence 35688899998 33 4455556654432 24578999999998521 122 22333333333344 3
Q ss_pred eEEEecCCCCCC
Q 009713 363 RFLFIPGPDDAG 374 (528)
Q Consensus 363 ~~v~VPG~~Dp~ 374 (528)
.++++-||||..
T Consensus 88 ~v~llrGNHE~~ 99 (271)
T smart00156 88 RVVLLRGNHESR 99 (271)
T ss_pred CEEEEeccccHH
Confidence 789999999984
No 103
>PRK07373 DNA polymerase III subunit alpha; Reviewed
Probab=76.71 E-value=7.8 Score=42.32 Aligned_cols=62 Identities=13% Similarity=0.182 Sum_probs=44.3
Q ss_pred cEEEEEEEEEc-----CCCc----EEEEeCCcEEEEEecccccc--ceeeccCeEEEEEEEEeeC-C--eEEEEEe
Q 009713 179 RRWVMGVISQL-----EDGH----FYLEDLAASVEIDLSKAKIT--TGFFTENTIVVAEGEMLVD-G--IFQVITC 240 (528)
Q Consensus 179 ~~~vlGml~~~-----~~g~----~~LED~sg~V~Ldls~~~~~--~g~f~~G~vV~veG~~~~~-g--~F~V~~i 240 (528)
++.+.|||+.. ..|+ +.|||.+|++++.+-..... ..++.+|.+|+|+|..... | .+.|.+|
T Consensus 282 ~v~vaG~I~~ik~~~TKkG~~maf~~leD~tG~ie~vvFp~~y~~~~~~l~~~~~v~v~G~v~~~~~~~~liv~~i 357 (449)
T PRK07373 282 KVSAVVMLNEVKKIVTKKGDPMAFLQLEDLSGQSEAVVFPKSYERISELLQVDARLIIWGKVDRRDDQVQLIVEDA 357 (449)
T ss_pred EEEEEEEEEEeEecccCCCCEEEEEEEEECCCCEEEEECHHHHHHHHHHhccCCEEEEEEEEEecCCeEEEEEeEe
Confidence 34799999863 3464 37999999999976422221 3567899999999999643 3 4667766
No 104
>PRK07452 DNA polymerase III subunit delta; Validated
Probab=76.62 E-value=5.9 Score=40.89 Aligned_cols=61 Identities=16% Similarity=0.164 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHhcCCccCHHHHHHHHHhhccCCCChHHHHHHHHHHHhcccC---CCcceeeHHHHHHHHH
Q 009713 4 QTRKKIQKKMKIRGYGLRMDALDEILSFVNRFPDAEDEAIDLLLDQFEHESS---LKSSIIDKESVNRVTS 71 (528)
Q Consensus 4 ~~r~~i~~~fk~~gl~l~~~al~~l~~~~~~~~~~~~~~~~~~~~~i~k~~~---~~~~~vd~~~l~~~~~ 71 (528)
++.+.|.+.|+++|++|.++|+++|++.++.. +..+..++.|..- ..+..|+.+.|++++.
T Consensus 134 ~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~d-------l~~l~~EleKL~ly~~~~~~~It~~~V~~~v~ 197 (326)
T PRK07452 134 GLKQLVERTAQELGVKLTPEAAELLAEAVGND-------SRRLYNELEKLALYAENSTKPISAEEVKALVS 197 (326)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHhCcc-------HHHHHHHHHHHHHhccCCCCccCHHHHHHHhc
Confidence 57788999999999999999999999987642 3334444444320 1344678888888764
No 105
>PRK05673 dnaE DNA polymerase III subunit alpha; Validated
Probab=76.50 E-value=28 Score=42.50 Aligned_cols=124 Identities=20% Similarity=0.290 Sum_probs=72.4
Q ss_pred eecccccC-CCCc-EEEEEEEEEc-----CCCc----EEEEeCCcEEEEEecccccc--ceeeccCeEEEEEEEEeeC-C
Q 009713 168 STIQSLVG-QTGR-RWVMGVISQL-----EDGH----FYLEDLAASVEIDLSKAKIT--TGFFTENTIVVAEGEMLVD-G 233 (528)
Q Consensus 168 t~I~~Llg-~~g~-~~vlGml~~~-----~~g~----~~LED~sg~V~Ldls~~~~~--~g~f~~G~vV~veG~~~~~-g 233 (528)
+++..|.. .+|+ +.+.|||+.. +.|+ +.|||.+|++++.+-...+. ...+.+|.+|+|+|..... |
T Consensus 966 ~~~~~l~~~~~g~~V~v~G~I~~vk~~~TKkG~~mafltLeD~TG~iEvviFp~~ye~~~~~L~~g~iV~V~GkVe~~~~ 1045 (1135)
T PRK05673 966 TRLADLEPTEGGSVVTVAGLVVSVRRRVTKRGNKMAIVTLEDLSGRIEVMLFSEALEKYRDLLEEDRIVVVKGQVSFDDG 1045 (1135)
T ss_pred cCHHHHhccccCceEEEEEEEEEEEecccCCCCeEEEEEEEeCCCcEEEEECHHHHHHHHHHhccCCEEEEEEEEEecCC
Confidence 34555432 2344 4899999863 4564 47999999999976432211 3566899999999998633 3
Q ss_pred --eEEEEEecCCCCCCchhhhhhhcCcccCCCCCCchhhhHHHHHHHHhccCCeEEEEeCCccCcHhHHHHHHHHHhccc
Q 009713 234 --IFQVITCGFPPLEDRDQSLKLLAGYDFFGGGTLKKEDTLRLADLEKRAANDMFVILSDIWLDNEEVMGKLEVVLDGFE 311 (528)
Q Consensus 234 --~F~V~~i~~Pp~e~r~~s~~~~~~~d~fG~~~~~~~~~~~l~~~e~~~~~~~~v~lSdv~ld~~~~le~L~~ll~~~~ 311 (528)
.+.|.+|. |- + ....+.. ..+.+--+-.-.++..++.|+++|..+.
T Consensus 1046 ~~qlii~~I~-~L-~-----------------------------~~~~~~~-~~l~i~~~~~~~~~~~~~~l~~~l~~~~ 1093 (1135)
T PRK05673 1046 GLRLTAREVM-DL-E-----------------------------EARAKYA-RPLRISLPDRQLTPQLLERLKQVLEPHR 1093 (1135)
T ss_pred eEEEEEeecc-cH-H-----------------------------HHhhccC-ceEEEEecccccCHHHHHHHHHHHHhCC
Confidence 36666552 10 0 0000001 1122221111124556889999999887
Q ss_pred CCCCCCeEEEEEcc
Q 009713 312 SVEVVPSLFVFMGN 325 (528)
Q Consensus 312 ~~~~~P~~~Vl~G~ 325 (528)
.. .|..+.+-.+
T Consensus 1094 G~--~~v~~~~~~~ 1105 (1135)
T PRK05673 1094 GT--SPVHLYLQDP 1105 (1135)
T ss_pred CC--ceEEEEEecC
Confidence 63 6777777554
No 106
>cd07416 MPP_PP2B PP2B, metallophosphatase domain. PP2B (calcineurin) is a unique serine/threonine protein phosphatase in its regulation by a second messenger (calcium and calmodulin). PP2B is involved in many biological processes including immune responses, the second messenger cAMP pathway, sodium/potassium ion transport in the nephron, cell cycle progression in lower eukaryotes, cardiac hypertrophy, and memory formation. PP2B is highly conserved from yeast to humans, but is absent from plants. PP2B is a heterodimer consisting of a catalytic subunit (CnA) and a regulatory subunit (CnB); CnB contains four Ca2+ binding motifs referred to as EF hands. The PPP (phosphoprotein phosphatase) family, to which PP2B belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -G
Probab=76.26 E-value=11 Score=39.00 Aligned_cols=73 Identities=14% Similarity=0.214 Sum_probs=45.9
Q ss_pred CCeEEEEeCCccCcHhHHHHHHHHHhcccCCCCCCeEEEEEccCCCCCCCCCCcchhHHHHHHHHHHHHHHcCCCCCCce
Q 009713 283 NDMFVILSDIWLDNEEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHS 362 (528)
Q Consensus 283 ~~~~v~lSdv~ld~~~~le~L~~ll~~~~~~~~~P~~~Vl~G~F~s~~~~~~~~~~~~~~~~f~~la~~l~~~p~l~~~~ 362 (528)
+..++++||+| ++ ++.|..+|..... .....+|++||++|.-- .+. |.+..|..+...+|+
T Consensus 42 ~~~i~ViGDIH-G~---~~dL~~l~~~~g~--~~~~~ylFLGDyVDRG~----~s~----Evi~lL~~lki~~p~----- 102 (305)
T cd07416 42 EAPVTVCGDIH-GQ---FYDLLKLFEVGGS--PANTRYLFLGDYVDRGY----FSI----ECVLYLWALKILYPK----- 102 (305)
T ss_pred CCCEEEEEeCC-CC---HHHHHHHHHhcCC--CCCceEEEECCccCCCC----ChH----HHHHHHHHHHhhcCC-----
Confidence 45788899998 33 3445566654322 23478999999999621 222 233334444444553
Q ss_pred eEEEecCCCCCC
Q 009713 363 RFLFIPGPDDAG 374 (528)
Q Consensus 363 ~~v~VPG~~Dp~ 374 (528)
.++++-||||..
T Consensus 103 ~v~lLRGNHE~~ 114 (305)
T cd07416 103 TLFLLRGNHECR 114 (305)
T ss_pred CEEEEeCCCcHH
Confidence 899999999984
No 107
>PRK13625 bis(5'-nucleosyl)-tetraphosphatase PrpE; Provisional
Probab=76.07 E-value=9.6 Score=37.94 Aligned_cols=41 Identities=12% Similarity=0.035 Sum_probs=25.7
Q ss_pred CCcEEEecCCCCcceEEeCCeEEEcCCCCCCCcEEEEEECCC
Q 009713 479 TPHAIVLADKSEQKAFKYTGITCFNPGSFSSDSTFVAYRPCT 520 (528)
Q Consensus 479 ~Pdvlil~d~~~~f~~~y~gc~~vNpGsf~~~~sf~~y~p~~ 520 (528)
-+..+|.||....-...++.+..|-.|.+. +|....+...+
T Consensus 184 g~~~vV~GHtp~~~~~~~~~~i~IDtGa~~-gG~Ltal~l~~ 224 (245)
T PRK13625 184 GTAWIVYGHTPVKEPRFVNHTVNIDTGCVF-GGRLTALRYPE 224 (245)
T ss_pred CCcEEEECCCCCccceecCCeEEEECcCcc-CCEEEEEECCC
Confidence 356789998764433455677888888874 34444444433
No 108
>cd07411 MPP_SoxB_N Thermus thermophilus SoxB and related proteins, N-terminal metallophosphatase domain. SoxB (sulfur oxidation protein B) is a periplasmic thiosulfohydrolase and an essential component of the sulfur oxidation pathway in archaea and bacteria. SoxB has a dinuclear manganese cluster and is thought to catalyze the release of sulfate from a protein-bound cysteine S-thiosulfonate. SoxB is expressed from the sox (sulfur oxidation) gene cluster, which encodes 15 other sox genes, and has two domains, an N-terminal metallophosphatase domain and a C-terminal 5'-nucleotidase domain. SoxB binds the SoxYZ complex and is thought to function as a sulfate-thiohydrolase. SoxB is closely related to the UshA, YchR, and CpdB proteins, all of which have the same two-domain architecture. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzy
Probab=75.86 E-value=54 Score=32.80 Aligned_cols=47 Identities=13% Similarity=0.093 Sum_probs=34.3
Q ss_pred CCCcEEEecCCCCcce---EEeCCeEEEcCCCCCCCcEEEEEECCCCeEE
Q 009713 478 PTPHAIVLADKSEQKA---FKYTGITCFNPGSFSSDSTFVAYRPCTQEVE 524 (528)
Q Consensus 478 p~Pdvlil~d~~~~f~---~~y~gc~~vNpGsf~~~~sf~~y~p~~~~~e 524 (528)
|-.|+++-||+|..+. ..+++|.++.+|+....-..+.+....+++.
T Consensus 206 ~~iDlilgGH~H~~~~~~~~~~~~t~v~~~g~~~~~vg~i~l~~~~~~i~ 255 (264)
T cd07411 206 PGIDVILSGHTHERTPKPIIAGGGTLVVEAGSHGKFLGRLDLDVRDGKIV 255 (264)
T ss_pred CCCcEEEeCcccccccCcccccCCEEEEEcCccccEEEEEEEEEECCEEE
Confidence 6678999999985443 3468999999999876666666665555543
No 109
>cd04485 DnaE_OBF DnaE_OBF: A subfamily of OB folds corresponding to the C-terminal OB-fold nucleic acid binding domain of Thermus aquaticus and Escherichia coli type C replicative DNA polymerase III alpha subunit (DnaE). The DNA polymerase holoenzyme of E. coli contains two copies of this replicative polymerase, each of which copies a different DNA strand. This group also contains Bacillus subtilis DnaE. Replication in B. subtilis and Staphylococcus aureus requires two different type C polymerases, polC and DnaE, both of which are thought to be included in the DNA polymerase holoenzyme. At the B. subtilis replication fork, polC appears to be involved in leading strand synthesis and DnaE in lagging strand synthesis.
Probab=73.86 E-value=13 Score=29.20 Aligned_cols=47 Identities=23% Similarity=0.362 Sum_probs=32.4
Q ss_pred EEEEeCCcEEEEEeccccc--cceeeccCeEEEEEEEEee-CC--eEEEEEe
Q 009713 194 FYLEDLAASVEIDLSKAKI--TTGFFTENTIVVAEGEMLV-DG--IFQVITC 240 (528)
Q Consensus 194 ~~LED~sg~V~Ldls~~~~--~~g~f~~G~vV~veG~~~~-~g--~F~V~~i 240 (528)
+.|+|.+|.+.+.+=+... -...+.+|.+|.+.|.... +| .+.+.++
T Consensus 23 ~~l~D~tg~~~~~~f~~~~~~~~~~l~~g~~v~v~G~v~~~~~~~~l~~~~i 74 (84)
T cd04485 23 VTLEDLTGSIEVVVFPETYEKYRDLLKEDALLLVEGKVERRDGGLRLIAERI 74 (84)
T ss_pred EEEEeCCCeEEEEECHHHHHHHHHHhcCCCEEEEEEEEEecCCceEEEeecc
Confidence 4799999999887543222 1345689999999999964 33 3555554
No 110
>PRK10053 hypothetical protein; Provisional
Probab=73.83 E-value=6.8 Score=35.39 Aligned_cols=65 Identities=11% Similarity=0.189 Sum_probs=50.4
Q ss_pred ceeecccccC-CCCcE-EEEEEEEE-cCCCcEEEEeCCcEEEEEeccccccceeeccCeEEEEEEEEe
Q 009713 166 EISTIQSLVG-QTGRR-WVMGVISQ-LEDGHFYLEDLAASVEIDLSKAKITTGFFTENTIVVAEGEML 230 (528)
Q Consensus 166 ~it~I~~Llg-~~g~~-~vlGml~~-~~~g~~~LED~sg~V~Ldls~~~~~~g~f~~G~vV~veG~~~ 230 (528)
.+++++..+. +++.. .+=|-|.+ ..+.+|...|.+|.|+++|.+.....--+.|+.-|-+.|++.
T Consensus 48 ~~~tV~~a~~~~Dd~~V~L~G~Iv~~lg~d~Y~F~D~tG~I~VeID~~~w~G~~v~p~~kV~I~GevD 115 (130)
T PRK10053 48 RKMTVEQAKTMHDGATVSLRGNLIDHKGDDRYVFRDKSGEINVIIPAAVFDGREVQPDQMININGSLD 115 (130)
T ss_pred ceEEHHHhhcCcCCCeEEEEEEEEEEeCCceEEEECCCCcEEEEeCHHHcCCCcCCCCCEEEEEEEEC
Confidence 3667777653 55554 78898875 466779999999999999998766444668999999999984
No 111
>KOG0373 consensus Serine/threonine specific protein phosphatase involved in cell cycle control, PP2A-related [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=73.78 E-value=17 Score=35.72 Aligned_cols=72 Identities=19% Similarity=0.262 Sum_probs=46.8
Q ss_pred CeEEEEeCCccCcHhHHHHHHHHHhcccCCCCCCeEEEEEccCCCCCCCCCCcchhHHHHHHHHHHHHHHcCCCCCCcee
Q 009713 284 DMFVILSDIWLDNEEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHSR 363 (528)
Q Consensus 284 ~~~v~lSdv~ld~~~~le~L~~ll~~~~~~~~~P~~~Vl~G~F~s~~~~~~~~~~~~~~~~f~~la~~l~~~p~l~~~~~ 363 (528)
.-+-+.+|+| ++ + -.|.+||..=- +.+-.-.|+||||+|.-+- + -|.|.-|.-+.++||. +
T Consensus 46 tPVTvCGDIH-GQ--F-yDL~eLFrtgG--~vP~tnYiFmGDfVDRGyy----S----LEtfT~l~~LkaryP~-----~ 106 (306)
T KOG0373|consen 46 TPVTVCGDIH-GQ--F-YDLLELFRTGG--QVPDTNYIFMGDFVDRGYY----S----LETFTLLLLLKARYPA-----K 106 (306)
T ss_pred CCeeEeeccc-hh--H-HHHHHHHHhcC--CCCCcceEEeccccccccc----c----HHHHHHHHHHhhcCCc-----e
Confidence 4566888887 21 2 23445554322 1244578999999997431 1 2456667777788985 8
Q ss_pred EEEecCCCCCC
Q 009713 364 FLFIPGPDDAG 374 (528)
Q Consensus 364 ~v~VPG~~Dp~ 374 (528)
+-++-|||.--
T Consensus 107 ITLlRGNHEsR 117 (306)
T KOG0373|consen 107 ITLLRGNHESR 117 (306)
T ss_pred eEEeeccchhh
Confidence 89999999863
No 112
>cd07420 MPP_RdgC Drosophila melanogaster RdgC and related proteins, metallophosphatase domain. RdgC (retinal degeneration C) is a vertebrate serine-threonine protein phosphatase that is required to prevent light-induced retinal degeneration. In addition to its catalytic domain, RdgC has two C-terminal EF hands. Homologs of RdgC include the human phosphatases protein phosphatase with EF hands 1 and -2 (PPEF-1 and -2). PPEF-1 transcripts are present at low levels in the retina, PPEF-2 transcripts and PPEF-2 protein are present at high levels in photoreceptors. The PPP (phosphoprotein phosphatase) family, to which RdgC belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all
Probab=73.65 E-value=13 Score=38.70 Aligned_cols=72 Identities=17% Similarity=0.182 Sum_probs=42.4
Q ss_pred eEEEEeCCccCcHhHHHHHHHHHhcccCCCCCCeEEEEEccCCCCCCCCCCcchhHHHHHHHHHHHHHHcCCCCCCceeE
Q 009713 285 MFVILSDIWLDNEEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHSRF 364 (528)
Q Consensus 285 ~~v~lSdv~ld~~~~le~L~~ll~~~~~~~~~P~~~Vl~G~F~s~~~~~~~~~~~~~~~~f~~la~~l~~~p~l~~~~~~ 364 (528)
.++|+||+| ++ +..|.++|....-. .....+|++||++|+-. .+.+.+ .-|..+-..+|+ ++
T Consensus 52 ~~~vvGDiH-G~---~~dL~~il~~~g~~-~~~~~~lFLGDyVDRG~----~s~Evl----~ll~~lk~~~p~-----~v 113 (321)
T cd07420 52 QVTICGDLH-GK---LDDLFLIFYKNGLP-SPENPYVFNGDFVDRGK----RSIEIL----IILFAFFLVYPN-----EV 113 (321)
T ss_pred CeEEEEeCC-CC---HHHHHHHHHHcCCC-CccceEEEeccccCCCC----CcHHHH----HHHHHHhhcCCC-----cE
Confidence 578889998 33 34455556543210 01257999999999721 223322 223222224553 78
Q ss_pred EEecCCCCCC
Q 009713 365 LFIPGPDDAG 374 (528)
Q Consensus 365 v~VPG~~Dp~ 374 (528)
+++-|||+-.
T Consensus 114 ~llRGNHE~~ 123 (321)
T cd07420 114 HLNRGNHEDH 123 (321)
T ss_pred EEecCchhhh
Confidence 9999999874
No 113
>cd07415 MPP_PP2A_PP4_PP6 PP2A, PP4, and PP6 phosphoprotein phosphatases, metallophosphatase domain. PP2A-like family of phosphoprotein phosphatases (PPP's) including PP4 and PP6. PP2A (Protein phosphatase 2A) is a critical regulator of many cellular activities. PP2A comprises about 1% of total cellular proteins. PP2A, together with protein phosphatase 1 (PP1), accounts for more than 90% of all serine/threonine phosphatase activities in most cells and tissues. The PP2A subunit in addition to having a catalytic domain homologous to PP1, has a unique C-terminal tail, containing a motif that is conserved in the catalytic subunits of all PP2A-like phosphatases including PP4 and PP6, and has an important role in PP2A regulation. The PP2A-like family of phosphatases all share a similar heterotrimeric architecture, that includes: a 65kDa scaffolding subunit (A), a 36kDa catalytic subunit (C), and one of 18 regulatory subunits (B). The PPP (phosphoprotein phosphatase) family, to which PP2
Probab=73.41 E-value=12 Score=38.38 Aligned_cols=73 Identities=15% Similarity=0.210 Sum_probs=43.7
Q ss_pred CCeEEEEeCCccCcHhHHHHHHHHHhcccCCCCCCeEEEEEccCCCCCCCCCCcchhHHHHHHHHHHHHHHcCCCCCCce
Q 009713 283 NDMFVILSDIWLDNEEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHS 362 (528)
Q Consensus 283 ~~~~v~lSdv~ld~~~~le~L~~ll~~~~~~~~~P~~~Vl~G~F~s~~~~~~~~~~~~~~~~f~~la~~l~~~p~l~~~~ 362 (528)
+..++++||+| ++ ++.|..+|..... .+...+|++||++|.-- .+. +.+..+..+...+| .
T Consensus 41 ~~~i~vvGDIH-G~---~~dL~~ll~~~~~--~~~~~~lfLGDyVDRG~----~s~----evl~ll~~lk~~~p-----~ 101 (285)
T cd07415 41 RSPVTVCGDIH-GQ---FYDLLELFRVGGD--PPDTNYLFLGDYVDRGY----YSV----ETFLLLLALKVRYP-----D 101 (285)
T ss_pred CCCEEEEEeCC-CC---HHHHHHHHHHcCC--CCCCeEEEEeEECCCCc----CHH----HHHHHHHHHhhcCC-----C
Confidence 34578889998 32 3445556654322 13457999999998621 112 23333333333344 4
Q ss_pred eEEEecCCCCCC
Q 009713 363 RFLFIPGPDDAG 374 (528)
Q Consensus 363 ~~v~VPG~~Dp~ 374 (528)
.++++-|||+..
T Consensus 102 ~v~llrGNHE~~ 113 (285)
T cd07415 102 RITLLRGNHESR 113 (285)
T ss_pred cEEEEecccchH
Confidence 889999999973
No 114
>cd07419 MPP_Bsu1_C Arabidopsis thaliana Bsu1 phosphatase and related proteins, C-terminal metallophosphatase domain. Bsu1 encodes a nuclear serine-threonine protein phosphatase found in plants and protozoans. Bsu1 has a C-terminal phosphatase domain and an N-terminal Kelch-repeat domain. Bsu1 is preferentially expressed in elongating plant cells. It modulates the phosphorylation state of Bes1, a transcriptional regulator phosphorylated by the glycogen synthase kinase Bin2, as part of a steroid hormone signal transduction pathway. The PPP (phosphoprotein phosphatase) family, to which Bsu1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most
Probab=73.01 E-value=13 Score=38.44 Aligned_cols=74 Identities=19% Similarity=0.324 Sum_probs=42.1
Q ss_pred CeEEEEeCCccCcHhHHHHHHHHHhcccCC------CCCCeEEEEEccCCCCCCCCCCcchhHHHHHHHHHHHHHHcCCC
Q 009713 284 DMFVILSDIWLDNEEVMGKLEVVLDGFESV------EVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPR 357 (528)
Q Consensus 284 ~~~v~lSdv~ld~~~~le~L~~ll~~~~~~------~~~P~~~Vl~G~F~s~~~~~~~~~~~~~~~~f~~la~~l~~~p~ 357 (528)
..+.++||+| + .++.|.++|+.+.-. +.....+|++||++|.- ..+. +.+.-+..+...+|
T Consensus 48 ~~~~viGDIH-G---~~~~L~~ll~~~g~~~~~~~~~~~~~~~vfLGDyVDRG----p~s~----evl~ll~~lk~~~p- 114 (311)
T cd07419 48 APIKIFGDIH-G---QFGDLMRLFDEYGSPVTEAAGDIEYIDYLFLGDYVDRG----SNSL----ETICLLLALKVKYP- 114 (311)
T ss_pred CCEEEEEecc-C---CHHHHHHHHHHcCCCcccccCCCcCceEEEECCccCCC----CChH----HHHHHHHHhhhcCC-
Confidence 4466778887 3 345556666544310 00123689999999862 1222 22333333333344
Q ss_pred CCCceeEEEecCCCCCC
Q 009713 358 LKEHSRFLFIPGPDDAG 374 (528)
Q Consensus 358 l~~~~~~v~VPG~~Dp~ 374 (528)
.+++++-||||..
T Consensus 115 ----~~v~lLRGNHE~~ 127 (311)
T cd07419 115 ----NQIHLIRGNHEDR 127 (311)
T ss_pred ----CcEEEeccccchH
Confidence 4899999999973
No 115
>PRK06585 holA DNA polymerase III subunit delta; Reviewed
Probab=72.50 E-value=12 Score=38.97 Aligned_cols=62 Identities=13% Similarity=0.098 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHhcCCccCHHHHHHHHHhhccCCCChHHHHHHHHHHHhccc--CCCcceeeHHHHHHHHHH
Q 009713 4 QTRKKIQKKMKIRGYGLRMDALDEILSFVNRFPDAEDEAIDLLLDQFEHES--SLKSSIIDKESVNRVTSV 72 (528)
Q Consensus 4 ~~r~~i~~~fk~~gl~l~~~al~~l~~~~~~~~~~~~~~~~~~~~~i~k~~--~~~~~~vd~~~l~~~~~~ 72 (528)
++.+.|.+.|+.+|+.|.++|+++|++.++.. +..+..++.|.. ......|+.+.|++++..
T Consensus 146 ~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~d-------l~~l~~EleKL~ly~~~~~~It~edV~~lv~~ 209 (343)
T PRK06585 146 DLARLIDDELAEAGLRITPDARALLVALLGGD-------RLASRNEIEKLALYAHGKGEITLDDVRAVVGD 209 (343)
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHhCCC-------HHHHHHHHHHHHHhcCCCCCCCHHHHHHHhCC
Confidence 56788999999999999999999999987542 333344444432 022346888888776643
No 116
>cd07414 MPP_PP1_PPKL PP1, PPKL (PP1 and kelch-like) enzymes, and related proteins, metallophosphatase domain. PP1 (protein phosphatase type 1) is a serine/threonine phosphatase that regulates many cellular processes including: cell-cycle progression, protein synthesis, muscle contraction, carbohydrate metabolism, transcription and neuronal signaling, through its interaction with at least 180 known targeting proteins. PP1 occurs in all tissues and regulates many pathways, ranging from cell-cycle progression to carbohydrate metabolism. Also included here are the PPKL (PP1 and kelch-like) enzymes including the PPQ, PPZ1, and PPZ2 fungal phosphatases. These PPKLs have a large N-terminal kelch repeat in addition to a C-terminal phosphoesterase domain. The PPP (phosphoprotein phosphatase) family, to which PP1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, Rdg
Probab=71.99 E-value=14 Score=38.06 Aligned_cols=73 Identities=16% Similarity=0.223 Sum_probs=43.6
Q ss_pred CCeEEEEeCCccCcHhHHHHHHHHHhcccCCCCCCeEEEEEccCCCCCCCCCCcchhHHHHHHHHHHHHHHcCCCCCCce
Q 009713 283 NDMFVILSDIWLDNEEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHS 362 (528)
Q Consensus 283 ~~~~v~lSdv~ld~~~~le~L~~ll~~~~~~~~~P~~~Vl~G~F~s~~~~~~~~~~~~~~~~f~~la~~l~~~p~l~~~~ 362 (528)
+..++++||+| ++ ++.|..+|..... .....+|++||++|.- ..+.+ .+..+..+-..+|.
T Consensus 49 ~~~i~viGDIH-G~---~~~L~~l~~~~~~--~~~~~~lfLGDyVDRG----~~s~e----~i~ll~~lk~~~p~----- 109 (293)
T cd07414 49 EAPLKICGDIH-GQ---YYDLLRLFEYGGF--PPESNYLFLGDYVDRG----KQSLE----TICLLLAYKIKYPE----- 109 (293)
T ss_pred CCceEEEEecC-CC---HHHHHHHHHhcCC--CCcceEEEEeeEecCC----CCcHH----HHHHHHHhhhhCCC-----
Confidence 34677889998 32 3445555654322 1345789999999962 12222 22333333334453
Q ss_pred eEEEecCCCCCC
Q 009713 363 RFLFIPGPDDAG 374 (528)
Q Consensus 363 ~~v~VPG~~Dp~ 374 (528)
.++++-||||..
T Consensus 110 ~i~llrGNHE~~ 121 (293)
T cd07414 110 NFFLLRGNHECA 121 (293)
T ss_pred cEEEEecccchh
Confidence 689999999984
No 117
>KOG3325 consensus Membrane coat complex Retromer, subunit VPS29/PEP11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.21 E-value=7.9 Score=35.73 Aligned_cols=28 Identities=21% Similarity=0.369 Sum_probs=23.8
Q ss_pred cEEEecCCCCcceEEeCCeEEEcCCCCC
Q 009713 481 HAIVLADKSEQKAFKYTGITCFNPGSFS 508 (528)
Q Consensus 481 dvlil~d~~~~f~~~y~gc~~vNpGsf~ 508 (528)
|+|+.|+.|.--+.+.+||.+|||||-.
T Consensus 109 DILl~G~Th~f~Aye~eg~ffvnPGSaT 136 (183)
T KOG3325|consen 109 DILLTGHTHKFEAYEHEGKFFVNPGSAT 136 (183)
T ss_pred cEEEeCCceeEEEEEeCCcEEeCCCccc
Confidence 8999999886656677899999999864
No 118
>PRK09087 hypothetical protein; Validated
Probab=69.70 E-value=13 Score=36.69 Aligned_cols=67 Identities=13% Similarity=0.079 Sum_probs=44.0
Q ss_pred hHHHHHHH-HHHHhcCCccCHHHHHHHHHhhccCCCChHHHHHHHHHHHhcccCCCcceeeHHHHHHHHHHH
Q 009713 3 GQTRKKIQ-KKMKIRGYGLRMDALDEILSFVNRFPDAEDEAIDLLLDQFEHESSLKSSIIDKESVNRVTSVL 73 (528)
Q Consensus 3 ~~~r~~i~-~~fk~~gl~l~~~al~~l~~~~~~~~~~~~~~~~~~~~~i~k~~~~~~~~vd~~~l~~~~~~~ 73 (528)
++.|..|+ +.|+.+|+.|..|++++|++.+... -..+..+++.+.+.....+.-||...++++++.+
T Consensus 155 ~e~~~~iL~~~~~~~~~~l~~ev~~~La~~~~r~----~~~l~~~l~~L~~~~~~~~~~it~~~~~~~l~~~ 222 (226)
T PRK09087 155 DALLSQVIFKLFADRQLYVDPHVVYYLVSRMERS----LFAAQTIVDRLDRLALERKSRITRALAAEVLNEM 222 (226)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhh----HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhh
Confidence 34455554 4558899999999999999876532 2334444445544321234568999999999875
No 119
>PRK05574 holA DNA polymerase III subunit delta; Reviewed
Probab=66.13 E-value=21 Score=36.69 Aligned_cols=61 Identities=20% Similarity=0.226 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHhcCCccCHHHHHHHHHhhccCCCChHHHHHHHHHHHhccc--CCCcceeeHHHHHHHHHH
Q 009713 4 QTRKKIQKKMKIRGYGLRMDALDEILSFVNRFPDAEDEAIDLLLDQFEHES--SLKSSIIDKESVNRVTSV 72 (528)
Q Consensus 4 ~~r~~i~~~fk~~gl~l~~~al~~l~~~~~~~~~~~~~~~~~~~~~i~k~~--~~~~~~vd~~~l~~~~~~ 72 (528)
+..+.|.+.|+..|++|.++|+++|++.++. + +..+..++.|.. ...+. ||.+.|++++..
T Consensus 150 ~~~~~i~~~~~~~g~~i~~~a~~~L~~~~~~----d---~~~l~~El~KL~l~~~~~~-It~~~I~~~i~~ 212 (340)
T PRK05574 150 ELPQWIQQRLKQQGLQIDAAALQLLAERVEG----N---LLALAQELEKLALLYPDGK-ITLEDVEEAVPD 212 (340)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHhCc----h---HHHHHHHHHHHHhhcCCCC-CCHHHHHHHHhh
Confidence 5667788888999999999999999998753 2 334444444432 02334 899998888764
No 120
>PTZ00480 serine/threonine-protein phosphatase; Provisional
Probab=65.87 E-value=20 Score=37.35 Aligned_cols=73 Identities=15% Similarity=0.203 Sum_probs=43.3
Q ss_pred CCeEEEEeCCccCcHhHHHHHHHHHhcccCCCCCCeEEEEEccCCCCCCCCCCcchhHHHHHHHHHHHHHHcCCCCCCce
Q 009713 283 NDMFVILSDIWLDNEEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHS 362 (528)
Q Consensus 283 ~~~~v~lSdv~ld~~~~le~L~~ll~~~~~~~~~P~~~Vl~G~F~s~~~~~~~~~~~~~~~~f~~la~~l~~~p~l~~~~ 362 (528)
+..++++||+| ++ ++.|..+|..... .+...+|++||++|.- ..+. +.+..+..+...+| .
T Consensus 58 ~~~i~vvGDIH-G~---~~dL~~l~~~~g~--~~~~~ylfLGDyVDRG----~~s~----evl~ll~~lki~~p-----~ 118 (320)
T PTZ00480 58 EAPLKICGDVH-GQ---YFDLLRLFEYGGY--PPESNYLFLGDYVDRG----KQSL----ETICLLLAYKIKYP-----E 118 (320)
T ss_pred CCCeEEEeecc-cC---HHHHHHHHHhcCC--CCcceEEEeceecCCC----CCcH----HHHHHHHHhcccCC-----C
Confidence 35688889998 22 3445556653322 1345789999999962 1122 22333332323344 3
Q ss_pred eEEEecCCCCCC
Q 009713 363 RFLFIPGPDDAG 374 (528)
Q Consensus 363 ~~v~VPG~~Dp~ 374 (528)
.++++-||||..
T Consensus 119 ~v~llRGNHE~~ 130 (320)
T PTZ00480 119 NFFLLRGNHECA 130 (320)
T ss_pred ceEEEecccchh
Confidence 799999999984
No 121
>PF06581 p31comet: Mad1 and Cdc20-bound-Mad2 binding; InterPro: IPR009511 This entry represents Mad1 and Cdc20-bound-Mad2 binding proteins that are involved in the cell-cycle surveillance mechanism called the spindle checkpoint []. This mechanism monitors the proper bipolar attachment of sister chromatids to spindle microtubules and ensures the fidelity of chromosome segregation during mitosis. A key player in mitosis is Mad2, which exhibits an unusual two-state behaviour. A Mad1-Mad2 core complex recruits cytosolic Mad2 to kinetochores through Mad2 dimerisation and converts Mad2 to a conformer amenable to Cdc20 binding. p31comet inactivates the checkpoint by binding to Mad1- or Cdc20-bound Mad2 in such a way as to stop Mad2 activation and to promote the dissociation of the Mad2-Cdc20 complex [].; GO: 0007096 regulation of exit from mitosis, 0005634 nucleus; PDB: 2QYF_B.
Probab=65.53 E-value=17 Score=36.44 Aligned_cols=81 Identities=19% Similarity=0.337 Sum_probs=40.4
Q ss_pred HHHHHHHHhcccCCCCCCeEEEEEccCCCCCCCC-----------CCc----chhHHHHHHHHH--HHHHHcCCCCCCce
Q 009713 300 MGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNL-----------SFH----SFSSLRLQFGKL--GQMIAAHPRLKEHS 362 (528)
Q Consensus 300 le~L~~ll~~~~~~~~~P~~~Vl~G~F~s~~~~~-----------~~~----~~~~~~~~f~~l--a~~l~~~p~l~~~~ 362 (528)
+..|+.+|.. + ..|.++||+|.-+..|--. +.+ ...-++..|++| ++.+++.....-..
T Consensus 125 l~hLe~lFs~--t--~Vp~VLILLGgt~~SPKE~YeInl~~l~~~s~e~slst~~clRkLfRsLf~aD~Fse~~~~Pl~~ 200 (264)
T PF06581_consen 125 LSHLEQLFSL--T--LVPRVLILLGGTAVSPKEFYEINLERLVPNSKEQSLSTAVCLRKLFRSLFTADAFSELQAPPLMG 200 (264)
T ss_dssp HHHHHHHHHH--S-----EEEEEESS-SSS-SEEEEEE-TTS--------SHHHHHHHHHHHHHHHTTTT---S-----E
T ss_pred HHHHHHHHhc--C--ccceEEEEecCccCCcceeEEEcchhhcccccccccccHHHHHHHHHHHHcccchhhccCCCccc
Confidence 3445555553 2 2799999999877664110 011 123455666654 33444444444567
Q ss_pred eEEEecCCCCCCCCCCCCCCCC
Q 009713 363 RFLFIPGPDDAGPSTVLPRCAL 384 (528)
Q Consensus 363 ~~v~VPG~~Dp~~~~~lPqppl 384 (528)
++|++=|.+|-+..-..|++-+
T Consensus 201 TiVmv~~hRdcg~dWF~PKlny 222 (264)
T PF06581_consen 201 TIVMVQGHRDCGSDWFRPKLNY 222 (264)
T ss_dssp EEEEEEEECCC--SSSEEETT-
T ss_pred eEEEEEcCCCCCcccccccccc
Confidence 8999999999998778888753
No 122
>PTZ00239 serine/threonine protein phosphatase 2A; Provisional
Probab=63.92 E-value=24 Score=36.48 Aligned_cols=72 Identities=14% Similarity=0.253 Sum_probs=42.7
Q ss_pred CeEEEEeCCccCcHhHHHHHHHHHhcccCCCCCCeEEEEEccCCCCCCCCCCcchhHHHHHHHHHHHHHHcCCCCCCcee
Q 009713 284 DMFVILSDIWLDNEEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHSR 363 (528)
Q Consensus 284 ~~~v~lSdv~ld~~~~le~L~~ll~~~~~~~~~P~~~Vl~G~F~s~~~~~~~~~~~~~~~~f~~la~~l~~~p~l~~~~~ 363 (528)
..++++||+| ++ ++.|..+|..... .+...+|++||++|.-- .+. +.+..+..+...+| ..
T Consensus 43 ~~i~vvGDIH-G~---~~~L~~l~~~~~~--~~~~~~lfLGDyVDRG~----~s~----evl~ll~~lk~~~p-----~~ 103 (303)
T PTZ00239 43 APVNVCGDIH-GQ---FYDLQALFKEGGD--IPNANYIFIGDFVDRGY----NSV----ETMEYLLCLKVKYP-----GN 103 (303)
T ss_pred CCEEEEEeCC-CC---HHHHHHHHHhcCC--CCCceEEEeeeEcCCCC----CHH----HHHHHHHHhhhcCC-----Cc
Confidence 4577889998 33 3445556654332 13457899999999621 112 22222322223344 38
Q ss_pred EEEecCCCCCC
Q 009713 364 FLFIPGPDDAG 374 (528)
Q Consensus 364 ~v~VPG~~Dp~ 374 (528)
++++-||||..
T Consensus 104 v~llrGNHE~~ 114 (303)
T PTZ00239 104 ITLLRGNHESR 114 (303)
T ss_pred EEEEecccchH
Confidence 89999999973
No 123
>cd04488 RecG_wedge_OBF RecG_wedge_OBF: A subfamily of OB folds corresponding to the OB fold found in the N-terminal (wedge) domain of Escherichia coli RecG. RecG is a branched-DNA-specific helicase, which catalyzes the interconversion of a DNA replication fork to a four-stranded (Holliday) junction in vivo and in vitro. This interconversion provides a route to repair stalled forks. The RecG monomer contains three domains. The N-terminal domain is named for its wedge structure, and may provide the specificity of RecG for binding branched-DNA structures. During the reversal of fork to Holliday junction, the wedge domain is fixed at the junction of the fork where the leading and lagging strand duplex arms meet, and is thought to promote the unwinding of the nascent leading and lagging strands. In order to form the Holliday junction, these nascent strands would be annealed, and the parental strands reannealed. The wedge domain may also be a processivity factor of RecG on these branched cha
Probab=63.18 E-value=18 Score=27.84 Aligned_cols=50 Identities=12% Similarity=0.014 Sum_probs=34.0
Q ss_pred EEEEeCCcEEEEEecc-ccccceeeccCeEEEEEEEEeeCCeEEEEEecCCCC
Q 009713 194 FYLEDLAASVEIDLSK-AKITTGFFTENTIVVAEGEMLVDGIFQVITCGFPPL 245 (528)
Q Consensus 194 ~~LED~sg~V~Ldls~-~~~~~g~f~~G~vV~veG~~~~~g~F~V~~i~~Pp~ 245 (528)
+.+.|.+|.+++.+=+ .......|.+|..+.+.|.....+. -..|.+|..
T Consensus 22 ~~~~D~~g~i~~~~F~~~~~~~~~~~~G~~~~v~Gkv~~~~~--~~qi~~P~~ 72 (75)
T cd04488 22 VTLSDGTGTLTLVFFNFQPYLKKQLPPGTRVRVSGKVKRFRG--GLQIVHPEY 72 (75)
T ss_pred EEEEcCCCEEEEEEECCCHHHHhcCCCCCEEEEEEEEeecCC--eeEEeCCcE
Confidence 4688999999887533 2222356789999999999964221 335677764
No 124
>PRK06893 DNA replication initiation factor; Validated
Probab=63.09 E-value=21 Score=35.11 Aligned_cols=67 Identities=13% Similarity=0.168 Sum_probs=41.9
Q ss_pred CChHHHHHHHHHH-HhcCCccCHHHHHHHHHhhccCCCChHHHHHHHHHHHhcccCCCcceeeHHHHHHHHH
Q 009713 1 MSGQTRKKIQKKM-KIRGYGLRMDALDEILSFVNRFPDAEDEAIDLLLDQFEHESSLKSSIIDKESVNRVTS 71 (528)
Q Consensus 1 m~~~~r~~i~~~f-k~~gl~l~~~al~~l~~~~~~~~~~~~~~~~~~~~~i~k~~~~~~~~vd~~~l~~~~~ 71 (528)
++++.|..|++.. +.+|+.+..|++.+|++.... +-..+..+++.+.+..-..+.-||.+.+++++.
T Consensus 161 pd~e~~~~iL~~~a~~~~l~l~~~v~~~L~~~~~~----d~r~l~~~l~~l~~~~~~~~~~it~~~v~~~L~ 228 (229)
T PRK06893 161 LTDEQKIIVLQRNAYQRGIELSDEVANFLLKRLDR----DMHTLFDALDLLDKASLQAQRKLTIPFVKEILG 228 (229)
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC----CHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHhc
Confidence 3556677776655 788999999999999986543 223344444444332101234578888887763
No 125
>PRK06461 single-stranded DNA-binding protein; Reviewed
Probab=63.07 E-value=46 Score=29.83 Aligned_cols=62 Identities=21% Similarity=0.231 Sum_probs=39.6
Q ss_pred ceeecccccCCCCcEEEEEEEEEc--------CCC--c---EEEEeCCcEEEEEeccccccceeeccCeEEEEEEEE
Q 009713 166 EISTIQSLVGQTGRRWVMGVISQL--------EDG--H---FYLEDLAASVEIDLSKAKITTGFFTENTIVVAEGEM 229 (528)
Q Consensus 166 ~it~I~~Llg~~g~~~vlGml~~~--------~~g--~---~~LED~sg~V~Ldls~~~~~~g~f~~G~vV~veG~~ 229 (528)
.++.|+.|.-....+.++|.|... ..| . +.|.|.||+|.+.+=... ...|-+|++|.++|-+
T Consensus 3 ~~~kI~dL~~g~~~v~~~~~V~~i~~~~~~~~k~~~~~v~~~~l~D~TG~I~~tlW~~~--a~~l~~GdvV~I~na~ 77 (129)
T PRK06461 3 MITKIKDLKPGMERVNVTVRVLEVGEPKVIQTKGGPRTISEAVVGDETGRVKLTLWGEQ--AGSLKEGEVVEIENAW 77 (129)
T ss_pred CceEHHHcCCCCCceEEEEEEEEcCCceEEEeCCCceEEEEEEEECCCCEEEEEEeCCc--cccCCCCCEEEEECcE
Confidence 366777774222234566766632 123 2 378999999999775432 2356899999999554
No 126
>COG1466 HolA DNA polymerase III, delta subunit [DNA replication, recombination, and repair]
Probab=62.46 E-value=25 Score=36.64 Aligned_cols=63 Identities=21% Similarity=0.159 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHhcCCccCHHHHHHHHHhhccCCCChHHHHHHHHHHHhcccCCCcceeeHHHHHHHHHH
Q 009713 4 QTRKKIQKKMKIRGYGLRMDALDEILSFVNRFPDAEDEAIDLLLDQFEHESSLKSSIIDKESVNRVTSV 72 (528)
Q Consensus 4 ~~r~~i~~~fk~~gl~l~~~al~~l~~~~~~~~~~~~~~~~~~~~~i~k~~~~~~~~vd~~~l~~~~~~ 72 (528)
++.+.|.+.|+.+|+.+.++|+++|++.++.. -..+..-++.+.=.+ ..+ .||.+.|++++..
T Consensus 144 ~l~~~i~~~~~~~~l~i~~~a~~~L~~~~~~n----l~~i~~Ei~KL~l~~-~~~-~I~~~~V~~~v~~ 206 (334)
T COG1466 144 ELPQWIKKRAKELGLKIDQEAIQLLLEALGGN----LLAIAQEIEKLALYA-GDK-EITLEDVEEVVSD 206 (334)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCc----HHHHHHHHHHHHHhC-CCC-cCCHHHHHHHHhc
Confidence 57789999999999999999999999987632 222333333333333 344 8899998887754
No 127
>PRK06620 hypothetical protein; Validated
Probab=61.97 E-value=20 Score=34.95 Aligned_cols=64 Identities=17% Similarity=0.124 Sum_probs=39.4
Q ss_pred hHHHHHHH-HHHHhcCCccCHHHHHHHHHhhccCCCChHHHHHHHHHHHhcccCCCcceeeHHHHHHHH
Q 009713 3 GQTRKKIQ-KKMKIRGYGLRMDALDEILSFVNRFPDAEDEAIDLLLDQFEHESSLKSSIIDKESVNRVT 70 (528)
Q Consensus 3 ~~~r~~i~-~~fk~~gl~l~~~al~~l~~~~~~~~~~~~~~~~~~~~~i~k~~~~~~~~vd~~~l~~~~ 70 (528)
+..+..++ |.++.+|+.|..+++++|++.+... -..+..+++.+.......+.-||.+.+++++
T Consensus 149 ~~~~~~~l~k~~~~~~l~l~~ev~~~L~~~~~~d----~r~l~~~l~~l~~~~~~~~~~it~~~~~~~l 213 (214)
T PRK06620 149 DELIKILIFKHFSISSVTISRQIIDFLLVNLPRE----YSKIIEILENINYFALISKRKITISLVKEVL 213 (214)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCC----HHHHHHHHHHHHHHHHHcCCCCCHHHHHHHh
Confidence 44444444 6668899999999999999876432 2334444444433211123457888887765
No 128
>cd07418 MPP_PP7 PP7, metallophosphatase domain. PP7 is a plant phosphoprotein phosphatase that is highly expressed in a subset of stomata and thought to play an important role in sensory signaling. PP7 acts as a positive regulator of signaling downstream of cryptochrome blue light photoreceptors. PP7 also controls amplification of phytochrome signaling, and interacts with nucleotidediphosphate kinase 2 (NDPK2), a positive regulator of phytochrome signalling. In addition, PP7 interacts with heat shock transcription factor HSF and up-regulates protective heat shock proteins. PP7 may also play a role in salicylic acid-dependent defense signaling. The PPP (phosphoprotein phosphatase) family, to which PP7 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-,
Probab=61.34 E-value=29 Score=37.03 Aligned_cols=72 Identities=15% Similarity=0.251 Sum_probs=41.4
Q ss_pred CeEEEEeCCccCcHhHHHHHHHHHhcccCCCCCC-eEEEEEccCCCCCCCCCCcchhHHHHHHHHHHHHHHcCCCCCCce
Q 009713 284 DMFVILSDIWLDNEEVMGKLEVVLDGFESVEVVP-SLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHS 362 (528)
Q Consensus 284 ~~~v~lSdv~ld~~~~le~L~~ll~~~~~~~~~P-~~~Vl~G~F~s~~~~~~~~~~~~~~~~f~~la~~l~~~p~l~~~~ 362 (528)
..++|+||+| +.- ..|..+|....-. .+ ..+|++||++|.- ..+.+. +..|..+-..+| .
T Consensus 66 ~~i~VvGDIH-G~~---~dL~~ll~~~g~~--~~~~~ylFLGDyVDRG----p~SlEv----l~lL~~lki~~p-----~ 126 (377)
T cd07418 66 CEVVVVGDVH-GQL---HDVLFLLEDAGFP--DQNRFYVFNGDYVDRG----AWGLET----FLLLLSWKVLLP-----D 126 (377)
T ss_pred CCEEEEEecC-CCH---HHHHHHHHHhCCC--CCCceEEEeccccCCC----CChHHH----HHHHHHHhhccC-----C
Confidence 4678999998 333 3344455532210 12 3589999999862 122222 222222222344 3
Q ss_pred eEEEecCCCCCC
Q 009713 363 RFLFIPGPDDAG 374 (528)
Q Consensus 363 ~~v~VPG~~Dp~ 374 (528)
.++++-||||..
T Consensus 127 ~v~lLRGNHE~~ 138 (377)
T cd07418 127 RVYLLRGNHESK 138 (377)
T ss_pred eEEEEeeecccc
Confidence 889999999984
No 129
>KOG1432 consensus Predicted DNA repair exonuclease SIA1 [General function prediction only]
Probab=61.12 E-value=21 Score=37.36 Aligned_cols=80 Identities=15% Similarity=0.182 Sum_probs=49.6
Q ss_pred cCCeEEEEeCCccCcH---hHHHHHH------------HHHhcccCCCCCCeEEEEEccCCCCCCCCCCcchhHHHHHHH
Q 009713 282 ANDMFVILSDIWLDNE---EVMGKLE------------VVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFG 346 (528)
Q Consensus 282 ~~~~~v~lSdv~ld~~---~~le~L~------------~ll~~~~~~~~~P~~~Vl~G~F~s~~~~~~~~~~~~~~~~f~ 346 (528)
...+|+-++|+|++.. ...+.+- .+++..-+. +.|+.+|+.||-+.+ .+.+++.....
T Consensus 52 g~fKIlqvaDlH~g~g~~~~c~d~~p~~~~~csD~nTt~F~~rvL~s-E~PDlVVfTGD~i~g------~~t~Da~~sl~ 124 (379)
T KOG1432|consen 52 GTFKILQVADLHFGFGRETRCRDVLPSEEACCSDLNTTNFVSRVLAS-EKPDLVVFTGDNIFG------HSTQDAATSLM 124 (379)
T ss_pred CceEEEEeeccccccCCCccccccCcchhhhhcCccHHHHHHHHHhc-cCCCEEEEeCCcccc------cccHhHHHHHH
Confidence 3457888899998765 2211111 111211112 489999999999876 12344443333
Q ss_pred -HHHHHHHcCCCCCCceeEEEecCCCCCC
Q 009713 347 -KLGQMIAAHPRLKEHSRFLFIPGPDDAG 374 (528)
Q Consensus 347 -~la~~l~~~p~l~~~~~~v~VPG~~Dp~ 374 (528)
+++ |-+..++.+..+=||||--
T Consensus 125 kAva------P~I~~~IPwA~~lGNHDde 147 (379)
T KOG1432|consen 125 KAVA------PAIDRKIPWAAVLGNHDDE 147 (379)
T ss_pred HHhh------hHhhcCCCeEEEecccccc
Confidence 223 5566789999999999985
No 130
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=60.81 E-value=63 Score=39.73 Aligned_cols=31 Identities=13% Similarity=0.072 Sum_probs=25.9
Q ss_pred CCCcEEEecCCCCcceEEeCCeEEEcCCCCC
Q 009713 478 PTPHAIVLADKSEQKAFKYTGITCFNPGSFS 508 (528)
Q Consensus 478 p~Pdvlil~d~~~~f~~~y~gc~~vNpGsf~ 508 (528)
|=-|+++-||+|..+....+|+.++.+|++.
T Consensus 869 ~gIDvIigGHsH~~~~~~v~~~~ivqag~~g 899 (1163)
T PRK09419 869 KGVDAIISAHTHTLVDKVVNGTPVVQAYKYG 899 (1163)
T ss_pred CCCCEEEeCCCCccccccCCCEEEEeCChhH
Confidence 3468999999998776667899999999885
No 131
>cd04479 RPA3 RPA3: A subfamily of OB folds similar to human RPA3 (also called RPA14). RPA3 is the smallest subunit of Replication protein A (RPA). RPA is a nuclear ssDNA binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). RPA3 is believed to have a structural role in assembly of the RPA heterotrimer.
Probab=60.15 E-value=83 Score=26.90 Aligned_cols=58 Identities=16% Similarity=0.308 Sum_probs=43.5
Q ss_pred Cc-EEEEEEEEEcCCCcEEEEeCCc-EEEEEeccccccceeeccCeEEEEEEEEeeCCeEEEEE
Q 009713 178 GR-RWVMGVISQLEDGHFYLEDLAA-SVEIDLSKAKITTGFFTENTIVVAEGEMLVDGIFQVIT 239 (528)
Q Consensus 178 g~-~~vlGml~~~~~g~~~LED~sg-~V~Ldls~~~~~~g~f~~G~vV~veG~~~~~g~F~V~~ 239 (528)
|+ +.++|-+.+...+.+.+.+.+| .|++.++... .+ ..|.+|-|.|+...+....+..
T Consensus 15 gk~V~ivGkV~~~~~~~~~~~~~Dg~~v~v~l~~~~---~~-~~~~~vEViG~V~~~~~I~~~~ 74 (101)
T cd04479 15 GKTVRIVGKVEKVDGDSLTLISSDGVNVTVELNRPL---DL-PISGYVEVIGKVSPDLTIRVLS 74 (101)
T ss_pred CCEEEEEEEEEEecCCeEEEEcCCCCEEEEEeCCCC---Cc-ccCCEEEEEEEECCCCeEEEEE
Confidence 44 4899999998877899999998 9999886421 22 4688999999986555554443
No 132
>cd04492 YhaM_OBF_like YhaM_OBF_like: A subfamily of OB folds similar to that found in Bacillus subtilis YhaM and Staphylococcus aureus cmp-binding factor-1 (SaCBF1). Both these proteins are 3'-to-5'exoribonucleases. YhaM requires Mn2+ or Co2+ for activity and is inactive in the presence of Mg2+. YhaM also has a Mn2+ dependent 3'-to-5'single-stranded DNA exonuclease activity. SaCBF is also a double-stranded DNA binding protein, binding specifically to cmp, the replication enhancer found in S. aureus plasmid pT181. Proteins in this group combine an N-terminal OB fold with a C-terminal HD domain. The HD domain is found in metal-dependent phosphohydrolases.
Probab=60.02 E-value=15 Score=29.15 Aligned_cols=47 Identities=21% Similarity=0.273 Sum_probs=33.0
Q ss_pred EEEEeCCcEEEEEeccccc-cceeeccCeEEEEEEEEee-CC--eEEEEEe
Q 009713 194 FYLEDLAASVEIDLSKAKI-TTGFFTENTIVVAEGEMLV-DG--IFQVITC 240 (528)
Q Consensus 194 ~~LED~sg~V~Ldls~~~~-~~g~f~~G~vV~veG~~~~-~g--~F~V~~i 240 (528)
+.|+|.+|++++.+=+... ....+.+|.+|.+.|.... +| .+.+.+|
T Consensus 23 ~~l~D~tg~i~~~~f~~~~~~~~~l~~g~~v~v~G~v~~~~~~~~l~~~~i 73 (83)
T cd04492 23 LTLQDKTGEIEAKLWDASEEDEEKFKPGDIVHVKGRVEEYRGRLQLKIQRI 73 (83)
T ss_pred EEEEcCCCeEEEEEcCCChhhHhhCCCCCEEEEEEEEEEeCCceeEEEEEE
Confidence 5799999999997643221 1356789999999999863 34 2445555
No 133
>PRK08084 DNA replication initiation factor; Provisional
Probab=59.04 E-value=29 Score=34.23 Aligned_cols=66 Identities=18% Similarity=0.225 Sum_probs=41.1
Q ss_pred ChHHHHHHHHH-HHhcCCccCHHHHHHHHHhhccCCCChHHHHHHHHHHHhcccCCCcceeeHHHHHHHHH
Q 009713 2 SGQTRKKIQKK-MKIRGYGLRMDALDEILSFVNRFPDAEDEAIDLLLDQFEHESSLKSSIIDKESVNRVTS 71 (528)
Q Consensus 2 ~~~~r~~i~~~-fk~~gl~l~~~al~~l~~~~~~~~~~~~~~~~~~~~~i~k~~~~~~~~vd~~~l~~~~~ 71 (528)
+++.|..|++. ++.+|+.+..|++.+|++..... -..+..+++.+.+.....+.-||.+.+++++.
T Consensus 168 ~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~d----~r~l~~~l~~l~~~~l~~~~~it~~~~k~~l~ 234 (235)
T PRK08084 168 SDEEKLQALQLRARLRGFELPEDVGRFLLKRLDRE----MRTLFMTLDQLDRASITAQRKLTIPFVKEILK 234 (235)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCC----HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHc
Confidence 34455555555 78899999999999999876432 23344444444432101234588888888763
No 134
>TIGR01128 holA DNA polymerase III, delta subunit. subunit around DNA forming a DNA sliding clamp.
Probab=57.57 E-value=38 Score=34.15 Aligned_cols=63 Identities=22% Similarity=0.205 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHhcCCccCHHHHHHHHHhhccCCCChHHHHHHHHHHHhcccCCCcceeeHHHHHHHHHH
Q 009713 4 QTRKKIQKKMKIRGYGLRMDALDEILSFVNRFPDAEDEAIDLLLDQFEHESSLKSSIIDKESVNRVTSV 72 (528)
Q Consensus 4 ~~r~~i~~~fk~~gl~l~~~al~~l~~~~~~~~~~~~~~~~~~~~~i~k~~~~~~~~vd~~~l~~~~~~ 72 (528)
+..+.|.+.|+++|++|.++|+++|++.++. +-..+...++.+.-.. ..+ .||.+.|++++..
T Consensus 115 ~~~~~i~~~~~~~g~~i~~~a~~~l~~~~~~----d~~~l~~el~KL~~~~-~~~-~It~e~I~~~~~~ 177 (302)
T TIGR01128 115 ELPRWIQARLKKLGLRIDPDAVQLLAELVEG----NLLAIAQELEKLALYA-PDG-KITLEDVEEAVSD 177 (302)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHhCc----HHHHHHHHHHHHHhhC-CCC-CCCHHHHHHHHhh
Confidence 5667888899999999999999999987643 2233444444433332 233 5899998888754
No 135
>cd07417 MPP_PP5_C PP5, C-terminal metallophosphatase domain. Serine/threonine protein phosphatase-5 (PP5) is a member of the PPP gene family of protein phosphatases that is highly conserved among eukaryotes and widely expressed in mammalian tissues. PP5 has a C-terminal phosphatase domain and an extended N-terminal TPR (tetratricopeptide repeat) domain containing three TPR motifs. The PPP (phosphoprotein phosphatase) family, to which PP5 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cel
Probab=55.40 E-value=37 Score=35.32 Aligned_cols=72 Identities=14% Similarity=0.152 Sum_probs=41.0
Q ss_pred CeEEEEeCCccCcHhHHHHHHHHHhcccCCCCCCeEEEEEccCCCCCCCCCCcchhHHHHHHHHHHHHHHcCCCCCCcee
Q 009713 284 DMFVILSDIWLDNEEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHSR 363 (528)
Q Consensus 284 ~~~v~lSdv~ld~~~~le~L~~ll~~~~~~~~~P~~~Vl~G~F~s~~~~~~~~~~~~~~~~f~~la~~l~~~p~l~~~~~ 363 (528)
..++++||+| + .++.|.++|....-. ..-..+|++||.+|.- ..+.+. +..|..+...+| ..
T Consensus 60 ~~~~VvGDIH-G---~~~dL~~ll~~~g~~-~~~~~ylFLGDyVDRG----~~S~Ev----l~ll~~lki~~p-----~~ 121 (316)
T cd07417 60 EKITVCGDTH-G---QFYDLLNIFELNGLP-SETNPYLFNGDFVDRG----SFSVEV----ILTLFAFKLLYP-----NH 121 (316)
T ss_pred ceeEEeeccc-C---CHHHHHHHHHhcCCC-CccCeEEEEeeEecCC----CChHHH----HHHHHHhhhccC-----Cc
Confidence 3477889998 3 344555666533210 0124799999999962 122222 222222222334 36
Q ss_pred EEEecCCCCC
Q 009713 364 FLFIPGPDDA 373 (528)
Q Consensus 364 ~v~VPG~~Dp 373 (528)
++++-|||+.
T Consensus 122 v~lLRGNHE~ 131 (316)
T cd07417 122 FHLNRGNHET 131 (316)
T ss_pred eEEEeeccch
Confidence 8899999997
No 136
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=55.34 E-value=33 Score=39.00 Aligned_cols=69 Identities=20% Similarity=0.125 Sum_probs=45.8
Q ss_pred ChHHHHHHHHHH-HhcCCccCHHHHHHHHHhhccCCCChHHHHHHHHHHHhcccCCCcceeeHHHHHHHHHHHH
Q 009713 2 SGQTRKKIQKKM-KIRGYGLRMDALDEILSFVNRFPDAEDEAIDLLLDQFEHESSLKSSIIDKESVNRVTSVLL 74 (528)
Q Consensus 2 ~~~~r~~i~~~f-k~~gl~l~~~al~~l~~~~~~~~~~~~~~~~~~~~~i~k~~~~~~~~vd~~~l~~~~~~~~ 74 (528)
++++|..|++.. +.+|+.|..|++++|++.+......-++++++|.. .+. ..+.-||.+.++++++.+.
T Consensus 447 D~EtR~aIL~kka~~r~l~l~~eVi~yLa~r~~rnvR~LegaL~rL~a-~a~---~~~~~itl~la~~vL~~~~ 516 (617)
T PRK14086 447 ELETRIAILRKKAVQEQLNAPPEVLEFIASRISRNIRELEGALIRVTA-FAS---LNRQPVDLGLTEIVLRDLI 516 (617)
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhccCCHHHHHHHHHHHHH-HHH---hhCCCCCHHHHHHHHHHhh
Confidence 456777777766 88999999999999998765432222344444432 111 2334578888888888763
No 137
>PF15072 DUF4539: Domain of unknown function (DUF4539)
Probab=54.54 E-value=32 Score=28.78 Aligned_cols=48 Identities=10% Similarity=0.243 Sum_probs=35.3
Q ss_pred EEEEEEEEc----CCCcEEEEeCCcEEEEEecccccc--ceeeccCeEEEEEEE
Q 009713 181 WVMGVISQL----EDGHFYLEDLAASVEIDLSKAKIT--TGFFTENTIVVAEGE 228 (528)
Q Consensus 181 ~vlGml~~~----~~g~~~LED~sg~V~Ldls~~~~~--~g~f~~G~vV~veG~ 228 (528)
.+.|||... .+....|.|+||+|+-.+.+.... ...+.+|++++.+-.
T Consensus 6 ~l~v~Iks~~~~~~D~~v~l~DpTG~i~~tiH~~v~~~y~~~l~~GavLlLk~V 59 (86)
T PF15072_consen 6 CLVVIIKSIVPSSEDAFVVLKDPTGEIRGTIHRKVLEEYGDELSPGAVLLLKDV 59 (86)
T ss_pred EEEEEEEEeeccCCCeEEEEECCCCcEEEEEeHHHHhhcCCccccCEEEEEeee
Confidence 677887653 234568999999999988754332 356689999999865
No 138
>PRK05642 DNA replication initiation factor; Validated
Probab=53.41 E-value=36 Score=33.59 Aligned_cols=65 Identities=18% Similarity=0.193 Sum_probs=42.7
Q ss_pred ChHHHHHHHH-HHHhcCCccCHHHHHHHHHhhccCCCChHHHHHHHHHHHhcccCCC-cceeeHHHHHHHHH
Q 009713 2 SGQTRKKIQK-KMKIRGYGLRMDALDEILSFVNRFPDAEDEAIDLLLDQFEHESSLK-SSIIDKESVNRVTS 71 (528)
Q Consensus 2 ~~~~r~~i~~-~fk~~gl~l~~~al~~l~~~~~~~~~~~~~~~~~~~~~i~k~~~~~-~~~vd~~~l~~~~~ 71 (528)
++..|..|++ .++.+|+.|..|++++|++.... +-..+..+++.+.+.. +. +.-||..-+++++.
T Consensus 167 ~~e~~~~il~~ka~~~~~~l~~ev~~~L~~~~~~----d~r~l~~~l~~l~~~~-l~~~~~it~~~~~~~L~ 233 (234)
T PRK05642 167 SDEDKLRALQLRASRRGLHLTDEVGHFILTRGTR----SMSALFDLLERLDQAS-LQAQRKLTIPFLKETLG 233 (234)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC----CHHHHHHHHHHHHHHH-HHcCCcCCHHHHHHHhc
Confidence 3445566666 77788999999999999986543 2244555555555432 22 35578888887764
No 139
>PRK07374 dnaE DNA polymerase III subunit alpha; Validated
Probab=51.63 E-value=40 Score=41.34 Aligned_cols=73 Identities=16% Similarity=0.222 Sum_probs=48.9
Q ss_pred eecccccC-CCCc-EEEEEEEEEc-----CCCc----EEEEeCCcEEEEEecccccc--ceeeccCeEEEEEEEEeeC-C
Q 009713 168 STIQSLVG-QTGR-RWVMGVISQL-----EDGH----FYLEDLAASVEIDLSKAKIT--TGFFTENTIVVAEGEMLVD-G 233 (528)
Q Consensus 168 t~I~~Llg-~~g~-~~vlGml~~~-----~~g~----~~LED~sg~V~Ldls~~~~~--~g~f~~G~vV~veG~~~~~-g 233 (528)
+++..|.. .+|+ +.|.|||+.. ..|+ +.|||.+|.+++.+-...+. ..++.+|.+|+|+|..... |
T Consensus 989 ~~~~~l~~~~~~~~v~v~g~i~~~k~~~Tk~G~~maf~~leD~tg~~e~vvFp~~y~~~~~~l~~~~~~~v~g~v~~~~~ 1068 (1170)
T PRK07374 989 ISLSSLEEQPDKAKVSAIAMIPEMKQVTTRKGDRMAILQLEDLTGSCEAVVFPKSYERLSDHLMTDTRLLVWAKVDRRDD 1068 (1170)
T ss_pred cCHHHHhcccCCCEEEEEEEEEEeEecccCCCCEEEEEEEEECCCCEEEEECHHHHHHHHHHhccCCEEEEEEEEEecCC
Confidence 34444431 2344 4899999864 4564 47999999999976422221 3566899999999999633 4
Q ss_pred --eEEEEEe
Q 009713 234 --IFQVITC 240 (528)
Q Consensus 234 --~F~V~~i 240 (528)
.+.|.++
T Consensus 1069 ~~~~~~~~i 1077 (1170)
T PRK07374 1069 RVQLIIDDC 1077 (1170)
T ss_pred eEEEEEeee
Confidence 4666666
No 140
>cd04456 S1_IF1A_like S1_IF1A_like: Translation initiation factor IF1A-like, S1-like RNA-binding domain. IF1A is also referred to as eIF1A in eukaryotes and aIF1A in archaea. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. IF1A is essential for translation initiation. eIF1A acts synergistically with eIF1 to mediate assembly of ribosomal initiation complexes at the initiation codon and maintain the accuracy of this process by recognizing and destabilizing aberrant preinitiation complexes from the mRNA. Without eIF1A and eIF1, 43S ribosomal preinitiation complexes can bind to the cap-proximal region, but are unable to reach the initiation codon. eIF1a also enhances the formation of 5'-terminal complexes in the presence of other translation initiation factors. This protein family is only found in eukaryotes and archaea.
Probab=51.18 E-value=63 Score=26.48 Aligned_cols=45 Identities=2% Similarity=0.085 Sum_probs=31.1
Q ss_pred EEEEEEEc-CCCcEEEEeCCcEEEE-EeccccccceeeccCeEEEEE
Q 009713 182 VMGVISQL-EDGHFYLEDLAASVEI-DLSKAKITTGFFTENTIVVAE 226 (528)
Q Consensus 182 vlGml~~~-~~g~~~LED~sg~V~L-dls~~~~~~g~f~~G~vV~ve 226 (528)
++|.+.+. +++.|.+|.++|...| .+.......-++.+|++|+|+
T Consensus 2 ~i~~V~~~lG~~~~~V~~~dg~~~l~~i~gK~Rk~iwI~~GD~VlV~ 48 (78)
T cd04456 2 QIVRVLRMLGNNRHEVECADGQRRLVSIPGKLRKNIWIKRGDFLIVD 48 (78)
T ss_pred eEEEEEEECCCCEEEEEECCCCEEEEEEchhhccCEEEcCCCEEEEE
Confidence 46777765 5678899999995555 454322224677899999996
No 141
>cd03524 RPA2_OBF_family RPA2_OBF_family: A family of oligonucleotide binding (OB) folds with similarity to the OB fold of the single strand (ss) DNA-binding domain (DBD)-D of human RPA2 (also called RPA32). RPA2 is a subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). RPA contains six OB folds, which are involved in ssDNA binding and in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. This family also includes OB folds similar to those found in Escherichia coli SSB, the wedge domain of E. coli RecG (a branched-DNA-specific helicase), E. coli ssDNA specific exodeoxyribonuclease VII large subunit, Pyroco
Probab=49.63 E-value=49 Score=24.71 Aligned_cols=50 Identities=18% Similarity=0.356 Sum_probs=33.5
Q ss_pred EEEEEEEcCC-------CcEEEEeCC-cEEEEEecccccc--ceeeccCeEEEEEEEEee
Q 009713 182 VMGVISQLED-------GHFYLEDLA-ASVEIDLSKAKIT--TGFFTENTIVVAEGEMLV 231 (528)
Q Consensus 182 vlGml~~~~~-------g~~~LED~s-g~V~Ldls~~~~~--~g~f~~G~vV~veG~~~~ 231 (528)
+.|+|..... ..+.|+|.+ |.+++.+-..... ...+.+|.+|.++|....
T Consensus 2 v~g~v~~~~~~~~~~~~~~~~l~D~~~~~i~~~~~~~~~~~~~~~~~~g~~v~v~g~v~~ 61 (75)
T cd03524 2 IVGIVVAVEEIRTEGKVLIFTLTDGTGGTIRVTLFGELAEELENLLKEGQVVYIKGKVKK 61 (75)
T ss_pred eEEEEEeecccccCCeEEEEEEEcCCCCEEEEEEEchHHHHHHhhccCCCEEEEEEEEEe
Confidence 4566665432 235799999 9999876433221 245689999999999853
No 142
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=48.84 E-value=42 Score=34.36 Aligned_cols=60 Identities=12% Similarity=0.174 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHhcCCccCHHHHHHHHHhhccCCCChHHHHHHHHHHHhcccCCCcceeeHHHHHHHHH
Q 009713 4 QTRKKIQKKMKIRGYGLRMDALDEILSFVNRFPDAEDEAIDLLLDQFEHESSLKSSIIDKESVNRVTS 71 (528)
Q Consensus 4 ~~r~~i~~~fk~~gl~l~~~al~~l~~~~~~~~~~~~~~~~~~~~~i~k~~~~~~~~vd~~~l~~~~~ 71 (528)
+.++.+.+.++++|+.+.++|++.|++..+ | + +..++..+++.. ..+..||.+.|++++.
T Consensus 188 ~~~~~l~~~~~~~~~~~~~~al~~l~~~~~---g-d---lr~l~~~l~~~~-~~~~~It~~~v~~~~~ 247 (337)
T PRK12402 188 ELVDVLESIAEAEGVDYDDDGLELIAYYAG---G-D---LRKAILTLQTAA-LAAGEITMEAAYEALG 247 (337)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHcC---C-C---HHHHHHHHHHHH-HcCCCCCHHHHHHHhC
Confidence 456666677799999999999999998652 2 2 334444454432 2334688888877665
No 143
>cd05793 S1_IF1A S1_IF1A: Translation initiation factor IF1A, also referred to as eIF1A in eukaryotes and aIF1A in archaea, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. IF1A is essential for translation initiation. eIF1A acts synergistically with eIF1 to mediate assembly of ribosomal initiation complexes at the initiation codon and maintain the accuracy of this process by recognizing and destabilizing aberrant preinitiation complexes from the mRNA. Without eIF1A and eIF1, 43S ribosomal preinitiation complexes can bind to the cap-proximal region, but are unable to reach the initiation codon. eIF1a also enhances the formation of 5'-terminal complexes in the presence of other translation initiation factors. This protein family is only found in eukaryotes and archaea.
Probab=48.68 E-value=71 Score=26.09 Aligned_cols=46 Identities=11% Similarity=0.231 Sum_probs=31.4
Q ss_pred EEEEEEEc-CCCcEEEEeCCcEEEE-EeccccccceeeccCeEEEEEE
Q 009713 182 VMGVISQL-EDGHFYLEDLAASVEI-DLSKAKITTGFFTENTIVVAEG 227 (528)
Q Consensus 182 vlGml~~~-~~g~~~LED~sg~V~L-dls~~~~~~g~f~~G~vV~veG 227 (528)
++|.+.+. +++.|.++.++|...| .++......-++.+|++|+|+-
T Consensus 2 ~~g~V~~~~g~~~~~V~~~~g~~~la~i~gK~rk~iwI~~GD~V~Ve~ 49 (77)
T cd05793 2 EYGQVEKMLGNGRLEVRCFDGKKRLCRIRGKMRKRVWINEGDIVLVAP 49 (77)
T ss_pred EEEEEEEEcCCCEEEEEECCCCEEEEEEchhhcccEEEcCCCEEEEEe
Confidence 45677665 5678889988885544 4543222246778999999983
No 144
>PRK07217 replication factor A; Reviewed
Probab=47.66 E-value=1.2e+02 Score=31.62 Aligned_cols=71 Identities=15% Similarity=0.112 Sum_probs=48.5
Q ss_pred ceeecccccCCCCcEEEEEEEEEcC---CCcE----EEEeCCcEEEEEeccccccceeeccCeEEEEEEEEee--CCeEE
Q 009713 166 EISTIQSLVGQTGRRWVMGVISQLE---DGHF----YLEDLAASVEIDLSKAKITTGFFTENTIVVAEGEMLV--DGIFQ 236 (528)
Q Consensus 166 ~it~I~~Llg~~g~~~vlGml~~~~---~g~~----~LED~sg~V~Ldls~~~~~~g~f~~G~vV~veG~~~~--~g~F~ 236 (528)
.++.|+.|-.....+.|.|.+.+.. ++.. .|.|+||+|++.+=... ..+.+.+|.+|-+++.+.. +|.+.
T Consensus 71 ~~~kI~Di~~~~~~VsV~aKVl~l~e~~~~si~qvGllgDETG~IkfT~W~~s-~~~~leeGd~~rI~na~v~ey~G~~~ 149 (311)
T PRK07217 71 ELVNIADIDEPEQWVDVTAKVVQLWEPSSDSIAQVGLLGDETGTIKFTKWAKS-DLPELEEGKSYLLKNVVTDEYQGRFS 149 (311)
T ss_pred CceeeeecCCCCCcEEEEEEEEEecCCCCCceEEEEEEEcCCceEEEEEccCC-CCCcccCCCEEEEEeEEEeeECCEEE
Confidence 5777888854444568889888753 2221 69999999999753311 1345689999999999853 46554
Q ss_pred E
Q 009713 237 V 237 (528)
Q Consensus 237 V 237 (528)
+
T Consensus 150 l 150 (311)
T PRK07217 150 V 150 (311)
T ss_pred E
Confidence 3
No 145
>PRK08402 replication factor A; Reviewed
Probab=46.92 E-value=67 Score=34.07 Aligned_cols=66 Identities=15% Similarity=0.155 Sum_probs=43.9
Q ss_pred ceeecccccCCCCcEEEEEEEEEcC--------CCc------EEEEeCCcEEEEEecccccc--ceeeccCeEEEEEEEE
Q 009713 166 EISTIQSLVGQTGRRWVMGVISQLE--------DGH------FYLEDLAASVEIDLSKAKIT--TGFFTENTIVVAEGEM 229 (528)
Q Consensus 166 ~it~I~~Llg~~g~~~vlGml~~~~--------~g~------~~LED~sg~V~Ldls~~~~~--~g~f~~G~vV~veG~~ 229 (528)
.+.+|+.|......+.+.|.|.... +|. ..|.|.||++++.+=+.... ..-+-+|.+|.+.|.+
T Consensus 61 ~~~kI~dl~~g~~~V~v~~rVl~~~~~r~f~rrdG~~~~V~~i~l~DeTG~ir~TlW~~~a~~~~~~l~~Gdvi~I~~a~ 140 (355)
T PRK08402 61 PLMHISDLVPGMRGVNIVGRVLRKYPPREYTKKDGSTGRVASLIIYDDTGRARVVLWDAKVAKYYNKINVGDVIKVIDAQ 140 (355)
T ss_pred CccCHHHccCCCceeeEEEEEEEccCCceeeccCCCcceEEEEEEEcCCCeEEEEEechhhhhhcccCCCCCEEEEECCE
Confidence 4677888843333457888888643 242 58999999999976432211 1225799999999777
Q ss_pred ee
Q 009713 230 LV 231 (528)
Q Consensus 230 ~~ 231 (528)
..
T Consensus 141 V~ 142 (355)
T PRK08402 141 VR 142 (355)
T ss_pred Ee
Confidence 54
No 146
>PRK06826 dnaE DNA polymerase III DnaE; Reviewed
Probab=46.12 E-value=55 Score=40.12 Aligned_cols=109 Identities=17% Similarity=0.297 Sum_probs=67.4
Q ss_pred EEEEEEEEEc-----CCCc----EEEEeCCcEEEEEecccccc--ceeeccCeEEEEEEEEee--CC--eEEEEEecCCC
Q 009713 180 RWVMGVISQL-----EDGH----FYLEDLAASVEIDLSKAKIT--TGFFTENTIVVAEGEMLV--DG--IFQVITCGFPP 244 (528)
Q Consensus 180 ~~vlGml~~~-----~~g~----~~LED~sg~V~Ldls~~~~~--~g~f~~G~vV~veG~~~~--~g--~F~V~~i~~Pp 244 (528)
+.|.|||+.. ..|+ +.|||.+|.+++.+-...+. ..++.+|.+|+|+|.... +| .+.|.++. |-
T Consensus 994 v~v~g~i~~~~~~~tk~G~~maf~~leD~~g~~e~~vfp~~~~~~~~~l~~~~~~~v~g~v~~~~~~~~~~~~~~~~-~l 1072 (1151)
T PRK06826 994 VIIGGIITEVKRKTTRNNEMMAFLTLEDLYGTVEVIVFPKVYEKYRSLLNEDNIVLIKGRVSLREDEEPKLICEEIE-PL 1072 (1151)
T ss_pred EEEEEEEEEeEeeccCCCCeEEEEEEEECCCcEEEEECHHHHHHHHHHhccCCEEEEEEEEEecCCCceEEEEeeee-cH
Confidence 4799999863 3564 46999999999986432221 356679999999999962 34 47777662 11
Q ss_pred CCCchhhhhhhcCcccCCCCCCchhhhHHHHHHHHhccCCeEEEEeCCccCcHhHHHHHHHHHhcccCCCCCCeEEEEEc
Q 009713 245 LEDRDQSLKLLAGYDFFGGGTLKKEDTLRLADLEKRAANDMFVILSDIWLDNEEVMGKLEVVLDGFESVEVVPSLFVFMG 324 (528)
Q Consensus 245 ~e~r~~s~~~~~~~d~fG~~~~~~~~~~~l~~~e~~~~~~~~v~lSdv~ld~~~~le~L~~ll~~~~~~~~~P~~~Vl~G 324 (528)
.+. ....-.+-+++-. .++..++.|..++..+... .|..+.+-.
T Consensus 1073 ~~~---------------------------------~~~~~~i~~~~~~-~~~~~~~~l~~~l~~~~G~--~~v~~~~~~ 1116 (1151)
T PRK06826 1073 VIN---------------------------------SEKKLYLRVEDKK-DIKLKLKELKEILKQYPGN--TPVYLYTEK 1116 (1151)
T ss_pred hhC---------------------------------cCCeEEEEecccc-cCHHHHHHHHHHHHhCCCC--ceEEEEEcC
Confidence 100 0000112222211 2456688999999988663 577766654
Q ss_pred c
Q 009713 325 N 325 (528)
Q Consensus 325 ~ 325 (528)
+
T Consensus 1117 ~ 1117 (1151)
T PRK06826 1117 E 1117 (1151)
T ss_pred C
Confidence 3
No 147
>KOG3770 consensus Acid sphingomyelinase and PHM5 phosphate metabolism protein [Lipid transport and metabolism]
Probab=45.67 E-value=67 Score=36.05 Aligned_cols=79 Identities=14% Similarity=0.225 Sum_probs=54.5
Q ss_pred HHHHHhcccCCCCCCeEEEEEccCCCCCCCCCCcchhHHHHHHHHHHHHHHc-CCCCCCceeEEEecCCCCCCCCCCCCC
Q 009713 303 LEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAA-HPRLKEHSRFLFIPGPDDAGPSTVLPR 381 (528)
Q Consensus 303 L~~ll~~~~~~~~~P~~~Vl~G~F~s~~~~~~~~~~~~~~~~f~~la~~l~~-~p~l~~~~~~v~VPG~~Dp~~~~~lPq 381 (528)
+..+|+++.+....++.++..||.+....-. ...+.--+....+.+.+.+ || .+.++.-=||||+.+.+.+|-
T Consensus 197 ies~L~~ike~~~~iD~I~wTGD~~~H~~w~--~t~~~~l~~~~~l~~~~~e~Fp----dvpvypalGNhe~~P~N~F~~ 270 (577)
T KOG3770|consen 197 IESALDHIKENHKDIDYIIWTGDNVAHDVWA--QTEEENLSMLSRLTSLLSEYFP----DVPVYPALGNHEIHPVNLFAP 270 (577)
T ss_pred HHHHHHHHHhcCCCCCEEEEeCCCCcccchh--hhHHHHHHHHHHHHHHHHHhCC----CCceeeecccCCCCcHhhcCC
Confidence 3445555555433499999999998764221 1223333445567777765 46 578999999999998789998
Q ss_pred CCCchh
Q 009713 382 CALPKY 387 (528)
Q Consensus 382 pplp~~ 387 (528)
+++|+.
T Consensus 271 ~~~~~~ 276 (577)
T KOG3770|consen 271 GSVPKR 276 (577)
T ss_pred CCCcch
Confidence 999987
No 148
>KOG3350 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.46 E-value=15 Score=34.93 Aligned_cols=59 Identities=14% Similarity=0.216 Sum_probs=43.8
Q ss_pred CCccCHHHHHHHHHhhccCCCChH--HHHHHHHHHHhcccCCCcceeeHHHHHHHHHHHHH
Q 009713 17 GYGLRMDALDEILSFVNRFPDAED--EAIDLLLDQFEHESSLKSSIIDKESVNRVTSVLLQ 75 (528)
Q Consensus 17 gl~l~~~al~~l~~~~~~~~~~~~--~~~~~~~~~i~k~~~~~~~~vd~~~l~~~~~~~~~ 75 (528)
-++|.++||++|.+|+.......+ +-...+++.+.+-||+++.--+.+..+++..+..+
T Consensus 9 ~~~LsA~aLAaL~eF~aEq~k~~e~~~~~~~~i~~~~eDwQlsqfwy~~eta~~La~e~v~ 69 (217)
T KOG3350|consen 9 DLQLSADALAALNEFLAEQQKRIEEEENQSDIIEKIGEDWQLSQFWYSDETARKLAAERVE 69 (217)
T ss_pred ccccCHHHHHHHHHHHHHHHhhhhccCchhhhhhhcccchhhhhhhcCHHHHHHHHHHHHh
Confidence 478999999999999865433322 22335888888888888877788888888877654
No 149
>PRK05672 dnaE2 error-prone DNA polymerase; Validated
Probab=45.00 E-value=47 Score=40.29 Aligned_cols=61 Identities=16% Similarity=0.176 Sum_probs=43.9
Q ss_pred EEEEEEEEEc-----CCC--cEEEEeCCcEEEEEecccccc--ceeeccCeEEEEEEEEee-CC--eEEEEEe
Q 009713 180 RWVMGVISQL-----EDG--HFYLEDLAASVEIDLSKAKIT--TGFFTENTIVVAEGEMLV-DG--IFQVITC 240 (528)
Q Consensus 180 ~~vlGml~~~-----~~g--~~~LED~sg~V~Ldls~~~~~--~g~f~~G~vV~veG~~~~-~g--~F~V~~i 240 (528)
+.|.||++.. +.| -+.|||.+|.+++.+-...+. ..++.+|.+++|+|.... +| .+.|.+|
T Consensus 956 v~v~g~i~~~~~~~TkkGmaf~~leD~~g~~e~~ifp~~~~~~~~~l~~~~~~~v~g~v~~~~~~~~~~~~~i 1028 (1046)
T PRK05672 956 VRVAGVVTHRQRPGTASGVTFLTLEDETGMVNVVVWPGLWERQRREALGARLLLVRGRVQNAEGVRHLVADRL 1028 (1046)
T ss_pred EEEEEEEEEEEEecCCCceEEEEEecCCCCEEEEECHHHHHHHHHHhccCCEEEEEEEEEecCCeEEEEEeee
Confidence 5899999843 455 147999999999986532221 355679999999999973 33 4777777
No 150
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=44.30 E-value=52 Score=33.30 Aligned_cols=60 Identities=13% Similarity=0.275 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHhcCCccCHHHHHHHHHhhccCCCChHHHHHHHHHHHhcccCCCcceeeHHHHHHHHH
Q 009713 4 QTRKKIQKKMKIRGYGLRMDALDEILSFVNRFPDAEDEAIDLLLDQFEHESSLKSSIIDKESVNRVTS 71 (528)
Q Consensus 4 ~~r~~i~~~fk~~gl~l~~~al~~l~~~~~~~~~~~~~~~~~~~~~i~k~~~~~~~~vd~~~l~~~~~ 71 (528)
+.++.+.+.+++.|+.+.++|+++|++..+ .+ +..++.++.+.. ..+..|+.+.|++++.
T Consensus 165 ei~~~l~~~~~~~~~~i~~~al~~l~~~~~----gd---~r~~~~~l~~~~-~~~~~it~~~v~~~~~ 224 (319)
T PRK00440 165 AVAERLRYIAENEGIEITDDALEAIYYVSE----GD---MRKAINALQAAA-ATGKEVTEEAVYKITG 224 (319)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHcC----CC---HHHHHHHHHHHH-HcCCCCCHHHHHHHhC
Confidence 567777788899999999999999987642 22 233333333332 2234577777766653
No 151
>PTZ00244 serine/threonine-protein phosphatase PP1; Provisional
Probab=44.02 E-value=62 Score=33.35 Aligned_cols=72 Identities=14% Similarity=0.190 Sum_probs=40.7
Q ss_pred CeEEEEeCCccCcHhHHHHHHHHHhcccCCCCCCeEEEEEccCCCCCCCCCCcchhHHHHHHHHHHHHHHcCCCCCCcee
Q 009713 284 DMFVILSDIWLDNEEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHSR 363 (528)
Q Consensus 284 ~~~v~lSdv~ld~~~~le~L~~ll~~~~~~~~~P~~~Vl~G~F~s~~~~~~~~~~~~~~~~f~~la~~l~~~p~l~~~~~ 363 (528)
..+.++||+| + .++.|..+|+...- .+...++++||.+|.-- .+.+. +..+..+--.+| ..
T Consensus 52 ~p~~ViGDIH-G---~~~~L~~l~~~~~~--~~~~~~lfLGDyVDRG~----~s~ev----l~ll~~lk~~~p-----~~ 112 (294)
T PTZ00244 52 PPVRVCGDTH-G---QYYDLLRIFEKCGF--PPYSNYLFLGDYVDRGK----HSVET----ITLQFCYKIVYP-----EN 112 (294)
T ss_pred CCceeeccCC-C---CHHHHHHHHHHcCC--CCcccEEEeeeEecCCC----CHHHH----HHHHHHHhhccC-----Ce
Confidence 3466778887 2 24556666664432 12336889999999621 12222 222211111234 37
Q ss_pred EEEecCCCCCC
Q 009713 364 FLFIPGPDDAG 374 (528)
Q Consensus 364 ~v~VPG~~Dp~ 374 (528)
++++-||||..
T Consensus 113 v~llrGNHE~~ 123 (294)
T PTZ00244 113 FFLLRGNHECA 123 (294)
T ss_pred EEEEecccchH
Confidence 89999999974
No 152
>smart00652 eIF1a eukaryotic translation initiation factor 1A.
Probab=43.44 E-value=96 Score=25.69 Aligned_cols=47 Identities=6% Similarity=0.121 Sum_probs=32.1
Q ss_pred EEEEEEEc-CCCcEEEEeCCcEEEE-EeccccccceeeccCeEEEEEEE
Q 009713 182 VMGVISQL-EDGHFYLEDLAASVEI-DLSKAKITTGFFTENTIVVAEGE 228 (528)
Q Consensus 182 vlGml~~~-~~g~~~LED~sg~V~L-dls~~~~~~g~f~~G~vV~veG~ 228 (528)
++|.+.+. .++.|.++.++|...| .+.......-++.+|++|+|+-.
T Consensus 7 ~~g~V~~~lG~~~~~V~~~dG~~~la~ipgK~Rk~iwI~~GD~VlVe~~ 55 (83)
T smart00652 7 EIAQVVKMLGNGRLEVMCADGKERLARIPGKMRKKVWIRRGDIVLVDPW 55 (83)
T ss_pred EEEEEEEEcCCCEEEEEECCCCEEEEEEchhhcccEEEcCCCEEEEEec
Confidence 66777765 5678899999996555 34432122467789999999743
No 153
>PF13742 tRNA_anti_2: OB-fold nucleic acid binding domain
Probab=43.05 E-value=1.1e+02 Score=25.93 Aligned_cols=71 Identities=27% Similarity=0.404 Sum_probs=45.6
Q ss_pred cccccCCC---CcEEEEEEEEEc---CCCcEE--EEeCCcEEEEEecccccc--c-eeeccCeEEEEEEEEe---eCCe-
Q 009713 170 IQSLVGQT---GRRWVMGVISQL---EDGHFY--LEDLAASVEIDLSKAKIT--T-GFFTENTIVVAEGEML---VDGI- 234 (528)
Q Consensus 170 I~~Llg~~---g~~~vlGml~~~---~~g~~~--LED~sg~V~Ldls~~~~~--~-g~f~~G~vV~veG~~~---~~g~- 234 (528)
|+.++.++ +..+|-|-|+.. ..|++| |-|...++...+=..... . ..+.+|+-|+|.|... ..|.
T Consensus 11 ik~~le~~~~~~~vwV~GEIs~~~~~~~gh~YftLkD~~a~i~~~~~~~~~~~i~~~~l~~G~~V~v~g~~~~y~~~G~~ 90 (99)
T PF13742_consen 11 IKDLLERDPPLPNVWVEGEISNLKRHSSGHVYFTLKDEEASISCVIFRSRARRIRGFDLKDGDKVLVRGRVSFYEPRGSL 90 (99)
T ss_pred HHHHHhcCCCcCCEEEEEEEeecEECCCceEEEEEEcCCcEEEEEEEHHHHhhCCCCCCCCCCEEEEEEEEEEECCCcEE
Confidence 34444443 456999999864 457755 668888888865322111 2 3558999999999864 3564
Q ss_pred -EEEEEe
Q 009713 235 -FQVITC 240 (528)
Q Consensus 235 -F~V~~i 240 (528)
|.|.+|
T Consensus 91 sl~v~~i 97 (99)
T PF13742_consen 91 SLIVEDI 97 (99)
T ss_pred EEEEEEe
Confidence 556655
No 154
>cd04491 SoSSB_OBF SoSSB_OBF: A subfamily of OB folds similar to the OB fold of the crenarchaeote Sulfolobus solfataricus single-stranded (ss) DNA-binding protein (SSoSSB). SSoSSB has a single OB fold, and it physically and functionally interacts with RNA polymerase. In vitro, SSoSSB can substitute for the basal transcription factor TBP, stimulating transcription from promoters under conditions in which TBP is limiting, and supporting transcription when TBP is absent. SSoSSB selectively melts the duplex DNA of promoter sequences. It also relieves transcriptional repression by the chromatin Alba. In addition, SSoSSB activates reverse gyrase activity, which involves DNA binding, DNA cleavage, strand passage and ligation. SSoSSB stimulates all these steps in the presence of the chromatin protein, Sul7d. SSoSSB antagonizes the inhibitory effect of Sul7d on reverse gyrase supercoiling activity. It also physically and functionally interacts with Mini-chromosome Maintenance (MCM), stimulating
Probab=43.04 E-value=77 Score=25.52 Aligned_cols=35 Identities=14% Similarity=0.127 Sum_probs=25.9
Q ss_pred EEEEeCCcEEEEEeccccccceeeccCeEEEEE-EEE
Q 009713 194 FYLEDLAASVEIDLSKAKITTGFFTENTIVVAE-GEM 229 (528)
Q Consensus 194 ~~LED~sg~V~Ldls~~~~~~g~f~~G~vV~ve-G~~ 229 (528)
+.|.|.||+|++.+=+... ...+-+|.+|.++ |..
T Consensus 27 ~~l~D~TG~i~~~~W~~~~-~~~~~~G~vv~i~~~~v 62 (82)
T cd04491 27 GLVGDETGTIRFTLWDEKA-ADDLEPGDVVRIENAYV 62 (82)
T ss_pred EEEECCCCEEEEEEECchh-cccCCCCCEEEEEeEEE
Confidence 4799999999997754322 3456799999999 444
No 155
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=41.33 E-value=63 Score=35.31 Aligned_cols=70 Identities=10% Similarity=0.134 Sum_probs=45.0
Q ss_pred hHHHHHHHHHH-HhcCCccCHHHHHHHHHhhccCCCChHHHHHHHHHHHhcccCCCcceeeHHHHHHHHHHH
Q 009713 3 GQTRKKIQKKM-KIRGYGLRMDALDEILSFVNRFPDAEDEAIDLLLDQFEHESSLKSSIIDKESVNRVTSVL 73 (528)
Q Consensus 3 ~~~r~~i~~~f-k~~gl~l~~~al~~l~~~~~~~~~~~~~~~~~~~~~i~k~~~~~~~~vd~~~l~~~~~~~ 73 (528)
.+.|..|++.. +..|+.|..+++.+|++.+...-..-+++++.+...++... ..+.-||.+.++++++.+
T Consensus 273 ~e~r~~iL~~k~~~~~~~l~~evl~~la~~~~~dir~L~g~l~~l~~~~a~~~-~~~~~i~~~~~~~~l~~~ 343 (445)
T PRK12422 273 KEGLRSFLERKAEALSIRIEETALDFLIEALSSNVKSLLHALTLLAKRVAYKK-LSHQLLYVDDIKALLHDV 343 (445)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH-hhCCCCCHHHHHHHHHHh
Confidence 45666666655 88899999999999998654321111344555542223321 445567888899888875
No 156
>PTZ00422 glideosome-associated protein 50; Provisional
Probab=40.64 E-value=95 Score=33.41 Aligned_cols=82 Identities=11% Similarity=0.012 Sum_probs=48.0
Q ss_pred CeEEEEeCCccCcHhHHHHHHHHHhcccCCCCCCeEEEEEccCCCCCCCCCCcchhHHHHHHHHHHHHHHcCCCCCCcee
Q 009713 284 DMFVILSDIWLDNEEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHSR 363 (528)
Q Consensus 284 ~~~v~lSdv~ld~~~~le~L~~ll~~~~~~~~~P~~~Vl~G~F~s~~~~~~~~~~~~~~~~f~~la~~l~~~p~l~~~~~ 363 (528)
.+|++++|-=-+. .......+.+..+.+. ..+..+|-+||-... +..+.+...+++.|+..-+- +.-.-.++
T Consensus 27 l~F~~vGDwG~g~-~~Q~~VA~~M~~~~~~-~~~~FVls~GDNF~~--Gv~sv~Dp~f~~~FE~vY~~----~s~~L~~P 98 (394)
T PTZ00422 27 LRFASLGNWGTGS-KQQKLVASYLKQYAKN-ERVTFLVSPGSNFPG--GVDGLNDPKWKHCFENVYSE----ESGDMQIP 98 (394)
T ss_pred EEEEEEecCCCCc-hhHHHHHHHHHHHHHh-CCCCEEEECCccccC--CCCCccchhHHhhHhhhccC----cchhhCCC
Confidence 3677888865432 2233344555555443 479999999954332 22223345677777755321 11002479
Q ss_pred EEEecCCCCC
Q 009713 364 FLFIPGPDDA 373 (528)
Q Consensus 364 ~v~VPG~~Dp 373 (528)
|..|.||||=
T Consensus 99 wy~vLGNHDy 108 (394)
T PTZ00422 99 FFTVLGQADW 108 (394)
T ss_pred eEEeCCcccc
Confidence 9999999995
No 157
>cd04482 RPA2_OBF_like RPA2_OBF_like: A subgroup of uncharacterized archaeal OB folds with similarity to the OB fold of the central ssDNA-binding domain (DBD)-D of human RPA2 (also called RPA32). RPA2 is a subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The major DNA binding activity of RPA is associated with RPA1 DBD-A and DBD-B; RPA2 DBD-D is a weak ssDNA-binding domain. RPA2 DBD-D is also involved in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. N-terminal to human RPA2 DBD-D is a domain containing all the known phosphorylation sites of RPA. Human RPA2 is phosphorylated in a cell cycle depende
Probab=40.33 E-value=2.2e+02 Score=23.77 Aligned_cols=61 Identities=15% Similarity=0.200 Sum_probs=40.8
Q ss_pred EEEEEEEEc----CCCcE--EEEeCCcEEEEEe-cccc-c--cceeeccCeEEEEEEEEeeCCeEEEEEec
Q 009713 181 WVMGVISQL----EDGHF--YLEDLAASVEIDL-SKAK-I--TTGFFTENTIVVAEGEMLVDGIFQVITCG 241 (528)
Q Consensus 181 ~vlGml~~~----~~g~~--~LED~sg~V~Ldl-s~~~-~--~~g~f~~G~vV~veG~~~~~g~F~V~~i~ 241 (528)
+|-|-|++. ..|++ .|-|.+++|...+ ..+. . -.-.+.+|+-|.|.|.......|.|..+-
T Consensus 2 ~v~GeVs~~~~~~~sGH~yFtlkD~~~~i~cv~f~~~g~~~~~~~~l~~Gd~V~v~G~v~~y~ql~ve~l~ 72 (91)
T cd04482 2 RVTGKVVEEPRTIEGGHVFFKISDGTGEIDCAAYEPTKEFRDVVRLLIPGDEVTVYGSVRPGTTLNLEKLR 72 (91)
T ss_pred EEEEEEeCCeecCCCCCEEEEEECCCcEEEEEEECcccccccccCCCCCCCEEEEEEEEecCCEEEEEEEE
Confidence 466777743 45775 5789999988854 2220 1 12334799999999998655568888774
No 158
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=39.14 E-value=78 Score=33.82 Aligned_cols=67 Identities=22% Similarity=0.153 Sum_probs=42.7
Q ss_pred hHHHHHHHHHH-HhcCCccCHHHHHHHHHhhccCCCChHHHHHHHHHHHhcccCCCcceeeHHHHHHHHHHH
Q 009713 3 GQTRKKIQKKM-KIRGYGLRMDALDEILSFVNRFPDAEDEAIDLLLDQFEHESSLKSSIIDKESVNRVTSVL 73 (528)
Q Consensus 3 ~~~r~~i~~~f-k~~gl~l~~~al~~l~~~~~~~~~~~~~~~~~~~~~i~k~~~~~~~~vd~~~l~~~~~~~ 73 (528)
...|..|++.. +.+|+.|..+++.+|++.+......-+++++.+...- . ..+.-||.+.++++++..
T Consensus 270 ~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~~~r~l~~~l~~l~~~a-~---~~~~~it~~~~~~~L~~~ 337 (405)
T TIGR00362 270 LETRLAILQKKAEEEGLELPDEVLEFIAKNIRSNVRELEGALNRLLAYA-S---LTGKPITLELAKEALKDL 337 (405)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHH-H---HhCCCCCHHHHHHHHHHh
Confidence 35566666666 8899999999999999876443221124444443221 1 233457888888888765
No 159
>PRK05159 aspC aspartyl-tRNA synthetase; Provisional
Probab=37.78 E-value=1.3e+02 Score=32.71 Aligned_cols=63 Identities=17% Similarity=0.295 Sum_probs=43.7
Q ss_pred ecccccCC-CCcE-EEEEEEEEcCC-Cc---EEEEeCCcEEEEEeccccc-----cceeeccCeEEEEEEEEee
Q 009713 169 TIQSLVGQ-TGRR-WVMGVISQLED-GH---FYLEDLAASVEIDLSKAKI-----TTGFFTENTIVVAEGEMLV 231 (528)
Q Consensus 169 ~I~~Llg~-~g~~-~vlGml~~~~~-g~---~~LED~sg~V~Ldls~~~~-----~~g~f~~G~vV~veG~~~~ 231 (528)
.|+.|-+. .|+. .|-|.|...+. |+ +.|.|.+|.|++.++.... ....+..|++|.|.|....
T Consensus 6 ~~~~l~~~~~g~~V~i~GrV~~~R~~gk~~Fl~LrD~~g~iQ~v~~~~~~~~~~~~~~~L~~gs~V~v~G~v~~ 79 (437)
T PRK05159 6 LTSELTPELDGEEVTLAGWVHEIRDLGGIAFLILRDRSGIIQVVVKKKVDEELFETIKKLKRESVVSVTGTVKA 79 (437)
T ss_pred EhhhCChhhCCCEEEEEEEeEeeecCCCeEEEEEEcCCcEEEEEEeCCccHHHHHHHhCCCCCcEEEEEEEEEc
Confidence 44444332 2554 79999997764 55 4788999999999875420 1134589999999998864
No 160
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=37.61 E-value=98 Score=33.47 Aligned_cols=69 Identities=20% Similarity=0.211 Sum_probs=46.9
Q ss_pred hHHHHHHHHH-HHhcCCccCHHHHHHHHHhhccCCCChHHHHHHHHHHHhcccCCCcceeeHHHHHHHHHHHHH
Q 009713 3 GQTRKKIQKK-MKIRGYGLRMDALDEILSFVNRFPDAEDEAIDLLLDQFEHESSLKSSIIDKESVNRVTSVLLQ 75 (528)
Q Consensus 3 ~~~r~~i~~~-fk~~gl~l~~~al~~l~~~~~~~~~~~~~~~~~~~~~i~k~~~~~~~~vd~~~l~~~~~~~~~ 75 (528)
+++|..|++. +...|+.|..|++.+|++-+.+.-..-+++++++. ......+.-||.+.++++++++..
T Consensus 246 ~e~r~aiL~kka~~~~~~i~~ev~~~la~~~~~nvReLegaL~~l~----~~a~~~~~~iTi~~v~e~L~~~~~ 315 (408)
T COG0593 246 DETRLAILRKKAEDRGIEIPDEVLEFLAKRLDRNVRELEGALNRLD----AFALFTKRAITIDLVKEILKDLLR 315 (408)
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccHHHHHHHHHHHH----HHHHhcCccCcHHHHHHHHHHhhc
Confidence 4677777766 59999999999999999876553221234444433 322134457899999999988754
No 161
>PRK08727 hypothetical protein; Validated
Probab=37.59 E-value=93 Score=30.56 Aligned_cols=65 Identities=25% Similarity=0.316 Sum_probs=40.0
Q ss_pred hHHHHHHHHH-HHhcCCccCHHHHHHHHHhhccCCCChHHHHHHHHHHHhcccCCCcceeeHHHHHHHHH
Q 009713 3 GQTRKKIQKK-MKIRGYGLRMDALDEILSFVNRFPDAEDEAIDLLLDQFEHESSLKSSIIDKESVNRVTS 71 (528)
Q Consensus 3 ~~~r~~i~~~-fk~~gl~l~~~al~~l~~~~~~~~~~~~~~~~~~~~~i~k~~~~~~~~vd~~~l~~~~~ 71 (528)
++.+..|++. ++.+|+.+..+++.+|++.... +-..+-.+++.+.....-.+..||.+.+++++.
T Consensus 164 ~e~~~~iL~~~a~~~~l~l~~e~~~~La~~~~r----d~r~~l~~L~~l~~~~~~~~~~it~~~~~~~l~ 229 (233)
T PRK08727 164 DVARAAVLRERAQRRGLALDEAAIDWLLTHGER----ELAGLVALLDRLDRESLAAKRRVTVPFLRRVLE 229 (233)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC----CHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHh
Confidence 4566666665 6888999999999999986532 222233333433321101123578888888774
No 162
>PF01176 eIF-1a: Translation initiation factor 1A / IF-1; InterPro: IPR006196 The S1 domain of around 70 amino acids, originally identified in ribosomal protein S1, is found in a large number of RNA-associated proteins. It has been shown that S1 proteins bind RNA through their S1 domains with some degree of sequence specificity. This type of S1 domain is found in translation initiation factor 1. The solution structure of one S1 RNA-binding domain from Escherichia coli polynucleotide phosphorylase has been determined []. It displays some similarity with the cold shock domain (CSD) (IPR002059 from INTERPRO). Both the S1 and the CSD domain consist of an antiparallel beta barrel of the same topology with 5 beta strands. This fold is also shared by many other proteins of unrelated function and is known as the OB fold. However, the S1 and CSD fold can be distinguished from the other OB folds by the presence of a short 3(10) helix at the end of strand 3. This unique feature is likely to form a part of the DNA/RNA-binding site. This entry is specific for bacterial, chloroplastic and eukaryotic IF-1 type S1 domains.; GO: 0003723 RNA binding, 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1JT8_A 3I4O_A 1AH9_A 1ZO1_W 1D7Q_A 2OQK_A 2DGY_A 1HR0_W.
Probab=37.33 E-value=1e+02 Score=24.03 Aligned_cols=46 Identities=13% Similarity=0.218 Sum_probs=28.7
Q ss_pred EEEEEEEc-CCCcEEEEeCCcEEEE-EeccccccceeeccCeEEEEEE
Q 009713 182 VMGVISQL-EDGHFYLEDLAASVEI-DLSKAKITTGFFTENTIVVAEG 227 (528)
Q Consensus 182 vlGml~~~-~~g~~~LED~sg~V~L-dls~~~~~~g~f~~G~vV~veG 227 (528)
++|.+.+. .++.|.++.++|...+ .++......-++-+|++|+|+=
T Consensus 5 ~~~~V~~~lG~~~~~V~~~dg~~~l~~i~gK~r~~iwI~~GD~V~V~~ 52 (65)
T PF01176_consen 5 VIGRVTEMLGNNLFEVECEDGEERLARIPGKFRKRIWIKRGDFVLVEP 52 (65)
T ss_dssp EEEEEEEEESSSEEEEEETTSEEEEEEE-HHHHTCC---TTEEEEEEE
T ss_pred EEEEEEEECCCCEEEEEeCCCCEEEEEeccceeeeEecCCCCEEEEEe
Confidence 56666654 5677899999996554 4554322356778999999973
No 163
>PRK04012 translation initiation factor IF-1A; Provisional
Probab=36.91 E-value=1.3e+02 Score=25.92 Aligned_cols=46 Identities=13% Similarity=0.234 Sum_probs=32.0
Q ss_pred EEEEEEEEc-CCCcEEEEeCCcEEEE-EeccccccceeeccCeEEEEE
Q 009713 181 WVMGVISQL-EDGHFYLEDLAASVEI-DLSKAKITTGFFTENTIVVAE 226 (528)
Q Consensus 181 ~vlGml~~~-~~g~~~LED~sg~V~L-dls~~~~~~g~f~~G~vV~ve 226 (528)
-++|.+.+. +++.|.++.++|...| .++.-....-++.+|++|+|+
T Consensus 22 e~~g~V~~~lG~~~~~V~~~dG~~~la~i~GK~Rk~IwI~~GD~VlVe 69 (100)
T PRK04012 22 EVFGVVEQMLGANRVRVRCMDGVERMGRIPGKMKKRMWIREGDVVIVA 69 (100)
T ss_pred EEEEEEEEEcCCCEEEEEeCCCCEEEEEEchhhcccEEecCCCEEEEE
Confidence 577777775 5677888988885444 454322225677899999997
No 164
>cd04320 AspRS_cyto_N AspRS_cyto_N: N-terminal, anticodon recognition domain of the type found in Saccharomyces cerevisiae and human cytoplasmic aspartyl-tRNA synthetase (AspRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis.
Probab=35.95 E-value=1.4e+02 Score=25.18 Aligned_cols=51 Identities=16% Similarity=0.278 Sum_probs=35.6
Q ss_pred EEEEEEEEEcCC-C-c---EEEEeCCcEEEEEecccc--ccc------eeeccCeEEEEEEEEe
Q 009713 180 RWVMGVISQLED-G-H---FYLEDLAASVEIDLSKAK--ITT------GFFTENTIVVAEGEML 230 (528)
Q Consensus 180 ~~vlGml~~~~~-g-~---~~LED~sg~V~Ldls~~~--~~~------g~f~~G~vV~veG~~~ 230 (528)
+.+-|-|...+. | + +.|-|.+|.+++.+++.. ... ..+..|++|.|+|+..
T Consensus 2 V~i~Gwv~~~R~~g~k~~Fi~LrD~sg~iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~ 65 (102)
T cd04320 2 VLIRARVHTSRAQGAKLAFLVLRQQGYTIQGVLAASAEGVSKQMVKWAGSLSKESIVDVEGTVK 65 (102)
T ss_pred EEEEEEEEEeecCCCceEEEEEecCCceEEEEEeCCcccCCHHHHHHHhcCCCccEEEEEEEEE
Confidence 356788876653 4 3 478899999999887432 011 2357899999999975
No 165
>cd04316 ND_PkAspRS_like_N ND_PkAspRS_like_N: N-terminal, anticodon recognition domain of the type found in the homodimeric non-discriminating (ND) Pyrococcus kodakaraensis aspartyl-tRNA synthetase (AspRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. P. kodakaraensis AspRS is a class 2b aaRS. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. P. kodakaraensis ND-AspRS can charge both tRNAAsp and tRNAAsn. Some of the enzymes in this group may be discriminating, based on the presence of homologs of asparaginyl-tRNA synthetase (AsnRS) in their completed genomes.
Probab=35.88 E-value=1.4e+02 Score=25.47 Aligned_cols=54 Identities=20% Similarity=0.376 Sum_probs=38.5
Q ss_pred Cc-EEEEEEEEEcCC-Cc---EEEEeCCcEEEEEecccccc------ceeeccCeEEEEEEEEee
Q 009713 178 GR-RWVMGVISQLED-GH---FYLEDLAASVEIDLSKAKIT------TGFFTENTIVVAEGEMLV 231 (528)
Q Consensus 178 g~-~~vlGml~~~~~-g~---~~LED~sg~V~Ldls~~~~~------~g~f~~G~vV~veG~~~~ 231 (528)
|+ +.|-|-|...+. |+ +.|.|.+|.+++.+++.... ..-+..|++|.|+|....
T Consensus 12 g~~V~v~Gwv~~~R~~g~~~Fi~LrD~~g~iQ~v~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~ 76 (108)
T cd04316 12 GEEVTVAGWVHEIRDLGGIKFVILRDREGIVQVTAPKKKVDKELFKTVRKLSRESVISVTGTVKA 76 (108)
T ss_pred CCEEEEEEEEEeeeccCCeEEEEEecCCeeEEEEEeCCCCCHHHHHHHhCCCCcCEEEEEEEEEe
Confidence 44 478899987653 44 47889999999988643211 123578999999998753
No 166
>cd04319 PhAsnRS_like_N PhAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Pyrococcus horikoshii AsnRS asparaginyl-tRNA synthetase (AsnRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The archeal enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose.
Probab=33.94 E-value=1.3e+02 Score=25.40 Aligned_cols=51 Identities=20% Similarity=0.195 Sum_probs=35.0
Q ss_pred EEEEEEEEEcCC-Cc---EEEEeCCcEEEEEecccccc-----ceeeccCeEEEEEEEEe
Q 009713 180 RWVMGVISQLED-GH---FYLEDLAASVEIDLSKAKIT-----TGFFTENTIVVAEGEML 230 (528)
Q Consensus 180 ~~vlGml~~~~~-g~---~~LED~sg~V~Ldls~~~~~-----~g~f~~G~vV~veG~~~ 230 (528)
+.|-|-|...+. |+ +.|.|.+|.+++.++..... ..-+..|++|.|+|...
T Consensus 2 V~v~Gwv~~~R~~gk~~Fi~lrD~~g~iQ~v~~~~~~~~~~~~~~~l~~~s~v~V~G~v~ 61 (103)
T cd04319 2 VTLAGWVYRKREVGKKAFIVLRDSTGIVQAVFSKDLNEEAYREAKKVGIESSVIVEGAVK 61 (103)
T ss_pred EEEEEEEEeEEcCCCeEEEEEecCCeeEEEEEeCCCCHHHHHHHhCCCCCCEEEEEEEEE
Confidence 456788876554 33 47889999999988643100 11246899999999875
No 167
>cd04321 ScAspRS_mt_like_N ScAspRS_mt_like_N: N-terminal, anticodon recognition domain of the type found in Saccharomyces cerevisiae mitochondrial (mt) aspartyl-tRNA synthetase (AspRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this fungal group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. Mutations in the gene for
Probab=33.88 E-value=2.3e+02 Score=23.09 Aligned_cols=51 Identities=16% Similarity=0.097 Sum_probs=35.6
Q ss_pred EEEEEEEEEcCC--Cc---EEEEeCCc-EEEEEeccccc--c-ceeeccCeEEEEEEEEe
Q 009713 180 RWVMGVISQLED--GH---FYLEDLAA-SVEIDLSKAKI--T-TGFFTENTIVVAEGEML 230 (528)
Q Consensus 180 ~~vlGml~~~~~--g~---~~LED~sg-~V~Ldls~~~~--~-~g~f~~G~vV~veG~~~ 230 (528)
+.+-|-|...+. |+ +.|.|.+| .+++.++.... . -.-+..|++|.|+|+..
T Consensus 2 V~v~Gwv~~~R~~~~~~~Fi~LrD~~g~~iQvv~~~~~~~~~~~~~l~~~s~V~V~G~v~ 61 (86)
T cd04321 2 VTLNGWIDRKPRIVKKLSFADLRDPNGDIIQLVSTAKKDAFSLLKSITAESPVQVRGKLQ 61 (86)
T ss_pred EEEEEeEeeEeCCCCceEEEEEECCCCCEEEEEECCCHHHHHHHhcCCCCcEEEEEEEEE
Confidence 457788887765 34 47899999 68997753211 0 12357899999999875
No 168
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=33.69 E-value=1.4e+02 Score=31.32 Aligned_cols=61 Identities=15% Similarity=0.116 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHhcCCccCHHHHHHHHHhhccCCCChHHHHHHHHHHHhcccCCCcceeeHHHHHHHHH
Q 009713 4 QTRKKIQKKMKIRGYGLRMDALDEILSFVNRFPDAEDEAIDLLLDQFEHESSLKSSIIDKESVNRVTS 71 (528)
Q Consensus 4 ~~r~~i~~~fk~~gl~l~~~al~~l~~~~~~~~~~~~~~~~~~~~~i~k~~~~~~~~vd~~~l~~~~~ 71 (528)
++...+.+.++++|+.+.++|++.|++..+ .+...+...++.+.... .+. |+.+.+++++.
T Consensus 171 ~l~~~l~~~~~~~g~~i~~~al~~l~~~~~----gdlr~~~~~lekl~~y~-~~~--it~~~v~~~~~ 231 (367)
T PRK14970 171 DIKEHLAGIAVKEGIKFEDDALHIIAQKAD----GALRDALSIFDRVVTFC-GKN--ITRQAVTENLN 231 (367)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHhCC----CCHHHHHHHHHHHHHhc-CCC--CCHHHHHHHhC
Confidence 556677788899999999999999998643 22233333333333221 222 67777666553
No 169
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=33.68 E-value=1.1e+02 Score=33.16 Aligned_cols=67 Identities=22% Similarity=0.169 Sum_probs=42.3
Q ss_pred hHHHHHHHHHH-HhcCCccCHHHHHHHHHhhccCCCChHHHHHHHHHHHhcccCCCcceeeHHHHHHHHHHH
Q 009713 3 GQTRKKIQKKM-KIRGYGLRMDALDEILSFVNRFPDAEDEAIDLLLDQFEHESSLKSSIIDKESVNRVTSVL 73 (528)
Q Consensus 3 ~~~r~~i~~~f-k~~gl~l~~~al~~l~~~~~~~~~~~~~~~~~~~~~i~k~~~~~~~~vd~~~l~~~~~~~ 73 (528)
...|..|++.. +.+|+.+..|++.+|++.+......-+++++.+... +. ..+.-||.+.++++++.+
T Consensus 282 ~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~~~R~l~~~l~~l~~~-~~---~~~~~it~~~~~~~l~~~ 349 (450)
T PRK00149 282 LETRIAILKKKAEEEGIDLPDEVLEFIAKNITSNVRELEGALNRLIAY-AS---LTGKPITLELAKEALKDL 349 (450)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcCCCHHHHHHHHHHHHHH-HH---hhCCCCCHHHHHHHHHHh
Confidence 35566666665 778999999999999986533211112344444322 11 233457889999988876
No 170
>PRK07279 dnaE DNA polymerase III DnaE; Reviewed
Probab=32.84 E-value=89 Score=37.83 Aligned_cols=71 Identities=15% Similarity=0.244 Sum_probs=45.8
Q ss_pred eecccccCCCCc-EEEEEEEEE-----cC-CCc----EEEEeCCcEEEEEecccccc--ceeeccCeEEEEEEEEee-CC
Q 009713 168 STIQSLVGQTGR-RWVMGVISQ-----LE-DGH----FYLEDLAASVEIDLSKAKIT--TGFFTENTIVVAEGEMLV-DG 233 (528)
Q Consensus 168 t~I~~Llg~~g~-~~vlGml~~-----~~-~g~----~~LED~sg~V~Ldls~~~~~--~g~f~~G~vV~veG~~~~-~g 233 (528)
+++..|. .++ +.+.|+|+. .. .|+ +.|||.+|.+++.+-..... ..++.+|.+|+|+|.... +|
T Consensus 876 ~~~~~l~--~~~~~~~~~~i~~~~~~~tk~~g~~maf~~leD~~g~ie~~vFp~~y~~~~~~l~~~~~~~v~G~v~~~~~ 953 (1034)
T PRK07279 876 TPISQLV--KNSEATILVQIQSIRVIRTKTKGQQMAFLSVTDTKKKLDVTLFPETYRQYKDELKEGKFYYLKGKIQERDG 953 (1034)
T ss_pred ccHHHHh--cCCcceEEEEEEEEEEEEEcCCCCeEEEEEEeeCCCcEEEEECHHHHHHHHHHhccCCEEEEEEEEEecCC
Confidence 3444443 233 467788863 23 554 57999999999986432221 355679999999999863 23
Q ss_pred --eEEEEEe
Q 009713 234 --IFQVITC 240 (528)
Q Consensus 234 --~F~V~~i 240 (528)
.+.|.++
T Consensus 954 ~~~l~~~~i 962 (1034)
T PRK07279 954 RLQMVLQQI 962 (1034)
T ss_pred eeEEEEeee
Confidence 3666665
No 171
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=32.73 E-value=1.1e+02 Score=31.74 Aligned_cols=60 Identities=22% Similarity=0.211 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHhcCCccCHHHHHHHHHhhccCCCChHHHHHHHHHHHhcccCCCcceeeHHHHHHHH
Q 009713 4 QTRKKIQKKMKIRGYGLRMDALDEILSFVNRFPDAEDEAIDLLLDQFEHESSLKSSIIDKESVNRVT 70 (528)
Q Consensus 4 ~~r~~i~~~fk~~gl~l~~~al~~l~~~~~~~~~~~~~~~~~~~~~i~k~~~~~~~~vd~~~l~~~~ 70 (528)
++.+.+.+.+++.|+.+.++|++.|++..+. +...+...++.+.... . .-|+.+.|++++
T Consensus 180 ~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g----~~~~a~~~lekl~~~~--~-~~it~~~v~~~~ 239 (355)
T TIGR02397 180 DIVERLKKILDKEGIKIEDEALELIARAADG----SLRDALSLLDQLISFG--N-GNITYEDVNELL 239 (355)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----ChHHHHHHHHHHHhhc--C-CCCCHHHHHHHh
Confidence 5677788888999999999999999987543 2222333333332221 1 226777776654
No 172
>cd04100 Asp_Lys_Asn_RS_N Asp_Lys_Asn_RS_N: N-terminal, anticodon recognition domain of class 2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. Class 2b aaRSs include the homodimeric aspartyl-, asparaginyl-, and lysyl-tRNA synthetases (AspRS, AsnRS, and LysRS). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. Included in this group are archeal and archeal-like A
Probab=32.61 E-value=1.7e+02 Score=23.63 Aligned_cols=51 Identities=18% Similarity=0.272 Sum_probs=34.9
Q ss_pred EEEEEEEEEcCC-Cc---EEEEeCCcEEEEEecccccc-----ceeeccCeEEEEEEEEe
Q 009713 180 RWVMGVISQLED-GH---FYLEDLAASVEIDLSKAKIT-----TGFFTENTIVVAEGEML 230 (528)
Q Consensus 180 ~~vlGml~~~~~-g~---~~LED~sg~V~Ldls~~~~~-----~g~f~~G~vV~veG~~~ 230 (528)
+.|-|-+...+. |+ +.|-|.+|.+++.++..... ..-+..|++|.|+|+..
T Consensus 2 V~i~Gwv~~~R~~g~~~Fi~Lrd~~~~iQ~v~~~~~~~~~~~~~~~l~~~s~V~v~G~~~ 61 (85)
T cd04100 2 VTLAGWVHSRRDHGGLIFIDLRDGSGIVQVVVNKEELGEFFEEAEKLRTESVVGVTGTVV 61 (85)
T ss_pred EEEEEEEehhccCCCEEEEEEEeCCeeEEEEEECCcChHHHHHHhCCCCCCEEEEEeEEE
Confidence 356677765443 44 46889999999987654211 12457899999999875
No 173
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=32.47 E-value=1.1e+02 Score=33.30 Aligned_cols=67 Identities=24% Similarity=0.156 Sum_probs=43.2
Q ss_pred hHHHHHHHHHH-HhcCCccCHHHHHHHHHhhccCCCChHHHHHHHHHHHhcccCCCcceeeHHHHHHHHHHH
Q 009713 3 GQTRKKIQKKM-KIRGYGLRMDALDEILSFVNRFPDAEDEAIDLLLDQFEHESSLKSSIIDKESVNRVTSVL 73 (528)
Q Consensus 3 ~~~r~~i~~~f-k~~gl~l~~~al~~l~~~~~~~~~~~~~~~~~~~~~i~k~~~~~~~~vd~~~l~~~~~~~ 73 (528)
.++|..|++.. +.+|+.|..|++++|++.+......-++++.++. ......+.-||.+.++++++.+
T Consensus 265 ~e~r~~IL~~~~~~~~~~l~~ev~~~Ia~~~~~~~R~L~g~l~~l~----~~~~~~~~~it~~~a~~~L~~~ 332 (440)
T PRK14088 265 EETRKKIARKMLEIEHGELPEEVLNFVAENVDDNLRRLRGAIIKLL----VYKETTGEEVDLKEAILLLKDF 332 (440)
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHhccccCHHHHHHHHHHHH----HHHHHhCCCCCHHHHHHHHHHH
Confidence 46777777777 7789999999999999876442111124444432 2111334457888888888765
No 174
>cd04323 AsnRS_cyto_like_N AsnRS_cyto_like_N: N-terminal, anticodon recognition domain of the type found in human and Saccharomyces cerevisiae cytoplasmic asparaginyl-tRNA synthetase (AsnRS), in Brugia malayai AsnRs and, in various putative bacterial AsnRSs. This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic synthesis, whereas the other exclusively with
Probab=32.31 E-value=1.8e+02 Score=23.44 Aligned_cols=51 Identities=25% Similarity=0.282 Sum_probs=35.0
Q ss_pred EEEEEEEEEcCC-Cc---EEEEeCCcEEEEEecccccc----ceeeccCeEEEEEEEEe
Q 009713 180 RWVMGVISQLED-GH---FYLEDLAASVEIDLSKAKIT----TGFFTENTIVVAEGEML 230 (528)
Q Consensus 180 ~~vlGml~~~~~-g~---~~LED~sg~V~Ldls~~~~~----~g~f~~G~vV~veG~~~ 230 (528)
+.+-|-+...+. |+ +.|.|.+|.+++.++....+ ..-+..|++|.|+|...
T Consensus 2 V~v~Gwv~~~R~~g~~~Fi~LrD~~~~iQ~v~~~~~~~~~~~~~~l~~es~V~V~G~v~ 60 (84)
T cd04323 2 VKVFGWVHRLRSQKKLMFLVLRDGTGFLQCVLSKKLVTEFYDAKSLTQESSVEVTGEVK 60 (84)
T ss_pred EEEEEEEEEEecCCCcEEEEEEcCCeEEEEEEcCCcchhHHHHhcCCCcCEEEEEEEEE
Confidence 356777776543 43 47889999999987643211 12357899999999875
No 175
>PLN02502 lysyl-tRNA synthetase
Probab=32.17 E-value=2.8e+02 Score=31.35 Aligned_cols=52 Identities=19% Similarity=0.203 Sum_probs=37.9
Q ss_pred EEEEEEEEEcC-CCc---EEEEeCCcEEEEEecccccc---------ceeeccCeEEEEEEEEee
Q 009713 180 RWVMGVISQLE-DGH---FYLEDLAASVEIDLSKAKIT---------TGFFTENTIVVAEGEMLV 231 (528)
Q Consensus 180 ~~vlGml~~~~-~g~---~~LED~sg~V~Ldls~~~~~---------~g~f~~G~vV~veG~~~~ 231 (528)
+.|-|.|...+ .|+ +.|.|.+|.|++.++..... ...+..|++|.|+|....
T Consensus 111 V~v~GrV~~~R~~Gk~~F~~LrD~~g~iQv~~~~~~~~~~~~~~~~~~~~l~~gdiV~V~G~~~~ 175 (553)
T PLN02502 111 VSVAGRIMAKRAFGKLAFYDLRDDGGKIQLYADKKRLDLDEEEFEKLHSLVDRGDIVGVTGTPGK 175 (553)
T ss_pred EEEEEEEEEEecCCCeEEEEEecCCccEEEEEECccccchhHHHHHHHhCCCCCcEEEEEEEEEe
Confidence 57899998765 465 47999999999987643211 123578999999998853
No 176
>cd04322 LysRS_N LysRS_N: N-terminal, anticodon recognition domain of lysyl-tRNA synthetases (LysRS). These enzymes are homodimeric class 2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Included in this group are E. coli LysS and LysU. These two isoforms of LysRS are encoded by distinct genes which are differently regulated. Eukaryotes contain 2 sets of aaRSs, both of which encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein
Probab=32.13 E-value=1.8e+02 Score=24.78 Aligned_cols=51 Identities=18% Similarity=0.257 Sum_probs=35.7
Q ss_pred EEEEEEEEEcCC-Cc---EEEEeCCcEEEEEeccccc-----c--ceeeccCeEEEEEEEEe
Q 009713 180 RWVMGVISQLED-GH---FYLEDLAASVEIDLSKAKI-----T--TGFFTENTIVVAEGEML 230 (528)
Q Consensus 180 ~~vlGml~~~~~-g~---~~LED~sg~V~Ldls~~~~-----~--~g~f~~G~vV~veG~~~ 230 (528)
+.|-|-+...+. |+ +.|-|.+|.+++.+..... . ...+..|++|.|+|...
T Consensus 2 v~v~GwV~~~R~~g~~~Fi~lrd~~~~lQ~v~~~~~~~~~~~~~~~~~l~~g~~V~v~G~v~ 63 (108)
T cd04322 2 VSVAGRIMSKRGSGKLSFADLQDESGKIQVYVNKDDLGEEEFEDFKKLLDLGDIIGVTGTPF 63 (108)
T ss_pred EEEEEEEEEEecCCCeEEEEEEECCeEEEEEEECCCCCHHHHHHHHhcCCCCCEEEEEEEEE
Confidence 457788876653 44 4688999999998754321 0 13368899999999875
No 177
>PRK06386 replication factor A; Reviewed
Probab=31.87 E-value=2.6e+02 Score=29.67 Aligned_cols=59 Identities=24% Similarity=0.251 Sum_probs=41.1
Q ss_pred ceeecccccCCCCc--EEEEEEEEEcCC---------C---cEEEEeCCcEEEEEeccccccceeeccCeEEEEEEEEee
Q 009713 166 EISTIQSLVGQTGR--RWVMGVISQLED---------G---HFYLEDLAASVEIDLSKAKITTGFFTENTIVVAEGEMLV 231 (528)
Q Consensus 166 ~it~I~~Llg~~g~--~~vlGml~~~~~---------g---~~~LED~sg~V~Ldls~~~~~~g~f~~G~vV~veG~~~~ 231 (528)
.+++|+-|. .|. +.|.|.+.+..+ | ...|.|+||+|++.+=.. -+.+|++|-+++.+..
T Consensus 106 ~~~KI~DL~--~g~~~v~V~akVle~~e~e~~~~g~~~~v~sg~lgDeTGrIr~TlW~~-----~l~eGd~v~i~na~v~ 178 (358)
T PRK06386 106 KLVKIRDLS--LVTPYVSVIGKITGITKKEYDSDGTSKIVYQGYIEDDTARVRISSFGK-----PLEDNRFVRIENARVS 178 (358)
T ss_pred CccEeEecc--CCCCceEEEEEEEEccCceEecCCCccEEEEEEEEcCCCeEEEEEccc-----cccCCCEEEEeeeEEE
Confidence 456777773 332 357888876543 2 247999999999976321 2478999999998854
No 178
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=31.46 E-value=1.1e+02 Score=34.05 Aligned_cols=59 Identities=10% Similarity=0.144 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHhcCCccCHHHHHHHHHhhccCCCChHHHHHHHHHHHhcccCCCcceeeHHHHHHHH
Q 009713 4 QTRKKIQKKMKIRGYGLRMDALDEILSFVNRFPDAEDEAIDLLLDQFEHESSLKSSIIDKESVNRVT 70 (528)
Q Consensus 4 ~~r~~i~~~fk~~gl~l~~~al~~l~~~~~~~~~~~~~~~~~~~~~i~k~~~~~~~~vd~~~l~~~~ 70 (528)
+.+..+.+.+++.|+.+.++|+++|++..+. + +..++.++++.. ..+.-|+.+.+++++
T Consensus 179 el~~~L~~i~~~egi~i~~~Al~~ia~~s~G----d---lR~aln~Lekl~-~~~~~It~~~V~~~l 237 (504)
T PRK14963 179 EIAGKLRRLLEAEGREAEPEALQLVARLADG----A---MRDAESLLERLL-ALGTPVTRKQVEEAL 237 (504)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----C---HHHHHHHHHHHH-hcCCCCCHHHHHHHH
Confidence 6678888889999999999999999986532 2 233333333321 112346766666553
No 179
>cd04317 EcAspRS_like_N EcAspRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli aspartyl-tRNA synthetase (AspRS), the human mitochondrial (mt) AspRS-2, the discriminating (D) Thermus thermophilus AspRS-1, and the nondiscriminating (ND) Helicobacter pylori AspRS. These homodimeric enzymes are class2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic synthesis, wh
Probab=31.24 E-value=1.3e+02 Score=26.76 Aligned_cols=52 Identities=13% Similarity=0.229 Sum_probs=38.0
Q ss_pred cEEEEEEEEEcCC-Cc---EEEEeCCcEEEEEecccccc----ceeeccCeEEEEEEEEe
Q 009713 179 RRWVMGVISQLED-GH---FYLEDLAASVEIDLSKAKIT----TGFFTENTIVVAEGEML 230 (528)
Q Consensus 179 ~~~vlGml~~~~~-g~---~~LED~sg~V~Ldls~~~~~----~g~f~~G~vV~veG~~~ 230 (528)
.+.|.|-|...+. |+ +.|.|.+|.+++.++..... ..-+..|++|.|+|+..
T Consensus 16 ~V~i~Gwv~~~R~~gk~~Fi~LrD~~g~~Q~v~~~~~~~~~~~~~~l~~gs~V~V~G~~~ 75 (135)
T cd04317 16 EVTLCGWVQRRRDHGGLIFIDLRDRYGIVQVVFDPEEAPEFELAEKLRNESVIQVTGKVR 75 (135)
T ss_pred EEEEEEeEehhcccCCEEEEEEecCCeeEEEEEeCCchhHHHHHhCCCCccEEEEEEEEE
Confidence 3589999987654 44 46889999999988653211 12357999999999875
No 180
>KOG3416 consensus Predicted nucleic acid binding protein [General function prediction only]
Probab=30.65 E-value=1.1e+02 Score=27.45 Aligned_cols=47 Identities=19% Similarity=0.295 Sum_probs=35.6
Q ss_pred EEEEEEEcCCCc----EEEEeCCcEEEEEeccccccceeeccCeEEEEEEEEe
Q 009713 182 VMGVISQLEDGH----FYLEDLAASVEIDLSKAKITTGFFTENTIVVAEGEML 230 (528)
Q Consensus 182 vlGml~~~~~g~----~~LED~sg~V~Ldls~~~~~~g~f~~G~vV~veG~~~ 230 (528)
-.|..+...+|+ +.+-|+||+|.+-+=+. ...+|-||+||-..|-|.
T Consensus 25 ~~g~~tkTkdg~~v~~~kVaD~TgsI~isvW~e--~~~~~~PGDIirLt~Gy~ 75 (134)
T KOG3416|consen 25 EYGRATKTKDGHEVRSCKVADETGSINISVWDE--EGCLIQPGDIIRLTGGYA 75 (134)
T ss_pred eeceeeeccCCCEEEEEEEecccceEEEEEecC--cCcccCCccEEEecccch
Confidence 467778888884 45779999999977552 246788999998877664
No 181
>TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial. This model represents the lysyl-tRNA synthetases that are class II amino-acyl tRNA synthetases. It includes all eukaryotic and most bacterial examples of the enzyme, but not archaeal or spirochete forms.
Probab=29.57 E-value=1.2e+02 Score=33.66 Aligned_cols=52 Identities=15% Similarity=0.229 Sum_probs=38.6
Q ss_pred EEEEEEEEEcCC-Cc---EEEEeCCcEEEEEecccccc-------ceeeccCeEEEEEEEEee
Q 009713 180 RWVMGVISQLED-GH---FYLEDLAASVEIDLSKAKIT-------TGFFTENTIVVAEGEMLV 231 (528)
Q Consensus 180 ~~vlGml~~~~~-g~---~~LED~sg~V~Ldls~~~~~-------~g~f~~G~vV~veG~~~~ 231 (528)
+.|-|.|...+. |+ +.|.|.+|.|++.++....+ ...+..|++|.|+|....
T Consensus 56 v~v~Grv~~~R~~gk~~F~~l~D~~g~iQ~~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~ 118 (496)
T TIGR00499 56 VSIAGRIMARRSMGKATFITLQDESGQIQLYVNKDDLPEDFYEFDEYLLDLGDIIGVTGYPFK 118 (496)
T ss_pred EEEEEEEEEEecCCCeEEEEEEcCCccEEEEEECCcCcHHHHHHHHhcCCCCCEEEEEEEEEE
Confidence 578999987764 43 47999999999988643221 123689999999998853
No 182
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=29.46 E-value=1.6e+02 Score=34.07 Aligned_cols=64 Identities=14% Similarity=0.146 Sum_probs=43.5
Q ss_pred ceeecccccCCCCc-EEEEEEEEEcC---CC----cEEEEeCCcEEEEEec--cccccceeeccCeEEEEEEEEee
Q 009713 166 EISTIQSLVGQTGR-RWVMGVISQLE---DG----HFYLEDLAASVEIDLS--KAKITTGFFTENTIVVAEGEMLV 231 (528)
Q Consensus 166 ~it~I~~Llg~~g~-~~vlGml~~~~---~g----~~~LED~sg~V~Ldls--~~~~~~g~f~~G~vV~veG~~~~ 231 (528)
.+++|..+ ..|+ +.+.|.|.... .+ ...+.|.+|.+.+.+= +..+....|.+|.-+.|.|++..
T Consensus 49 ~~~~i~~l--~~g~~vtv~g~V~~~~~~~~~~~~~~v~l~D~tg~i~l~~F~~n~~~~~~~l~~G~~~~v~Gkv~~ 122 (681)
T PRK10917 49 RLKPIAEL--RPGEKVTVEGEVLSAEVVFGKRRRLTVTVSDGTGNLTLRFFNFNQPYLKKQLKVGKRVAVYGKVKR 122 (681)
T ss_pred CcCCHHHC--CCCCEEEEEEEEEEEEEccCCceEEEEEEEECCeEEEEEEEccCcHHHHhhCCCCCEEEEEEEEEe
Confidence 36677776 3454 47888876532 12 2478999999988754 22222356789999999999964
No 183
>KOG1378 consensus Purple acid phosphatase [Carbohydrate transport and metabolism]
Probab=29.23 E-value=89 Score=34.12 Aligned_cols=183 Identities=13% Similarity=0.166 Sum_probs=97.5
Q ss_pred CCeEEEEeCCccCcHh-HHHHHHHHHhcccCCCCCCeEEEEEccCCCCCCCCCCcchhHHHHHHHHHHHHHHcCCCCCCc
Q 009713 283 NDMFVILSDIWLDNEE-VMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEH 361 (528)
Q Consensus 283 ~~~~v~lSdv~ld~~~-~le~L~~ll~~~~~~~~~P~~~Vl~G~F~s~~~~~~~~~~~~~~~~f~~la~~l~~~p~l~~~ 361 (528)
...++++||....... ... ..+... ..|++++++||+.=.-. . .. ..-|++.+.++ -+.+.
T Consensus 147 ~~~~~i~GDlG~~~~~~s~~------~~~~~~-~k~d~vlhiGDlsYa~~-~-----~n--~~wD~f~r~vE---p~As~ 208 (452)
T KOG1378|consen 147 PTRAAIFGDMGCTEPYTSTL------RNQEEN-LKPDAVLHIGDLSYAMG-Y-----SN--WQWDEFGRQVE---PIASY 208 (452)
T ss_pred ceeEEEEccccccccccchH------hHHhcc-cCCcEEEEecchhhcCC-C-----Cc--cchHHHHhhhh---hhhcc
Confidence 3568889999866554 211 112222 15999999999863211 1 10 34455555554 34566
Q ss_pred eeEEEecCCCCCCCCCCCCCCCCchhhHHHHhhhCCceEEecCC--eEEEEccEEEEEEeh-----------------HH
Q 009713 362 SRFLFIPGPDDAGPSTVLPRCALPKYLTEELQKYIPNAIFSSNP--CRIKFYTQEIVFFRQ-----------------DL 422 (528)
Q Consensus 362 ~~~v~VPG~~Dp~~~~~lPqpplp~~~~~~l~~~~~n~~~~sNP--cri~~~~~eIvi~rd-----------------Dl 422 (528)
....++.|||+-.- -|++++-. +..|+. .-.+....+|| ..+.+.+..|++... .=
T Consensus 209 vPymv~~GNHE~d~---~~~~~F~~-y~~Rf~-mP~~~s~s~~~l~YSfd~G~vhfv~lsse~~~~~~~~~~QY~WL~~d 283 (452)
T KOG1378|consen 209 VPYMVCSGNHEIDW---PPQPCFVP-YSARFN-MPGNSSESDSNLYYSFDVGGVHFVVLSTETYYNFLKGTAQYQWLERD 283 (452)
T ss_pred CceEEecccccccC---CCcccccc-cceeec-cCCCcCCCCCceeEEEeeccEEEEEEeccccccccccchHHHHHHHH
Confidence 79999999999753 33333321 122221 11233555565 335555788887541 11
Q ss_pred HHHHhhc-c---c---CCCCCCCCC-------C--hHHHHHHHHhcC--------CC------CCCCCCCCccccCCCCC
Q 009713 423 LYRMRRS-C---L---IPPSREETD-------D--PFEHLVATITHQ--------SH------LCPLPLTVQPIIWNYDH 472 (528)
Q Consensus 423 ~~~l~r~-~---i---~~p~~~~~~-------d--~~~~l~ktiL~Q--------~h------L~Pl~~~~~pi~w~~d~ 472 (528)
+.+..|. + | +.|.-..+. + .++.-++.||-+ || +||++-...-..|. ++
T Consensus 284 L~~v~r~~tPWlIv~~HrP~Y~S~~~~~~reG~~~~~~~~LE~l~~~~~VDvvf~GHvH~YER~~piyn~~~~~~~~-~~ 362 (452)
T KOG1378|consen 284 LASVDRKKTPWLIVQGHRPMYCSSNDAHYREGEFESMREGLEPLFVKYKVDVVFWGHVHRYERFCPIYNNTCGTGWG-PV 362 (452)
T ss_pred HHHhcccCCCeEEEEecccceecCCchhhccCcchhhHHHHHHHHHHhceeEEEeccceehhccchhhcceeeccCC-cc
Confidence 2333333 1 0 112111111 1 222234444433 23 47777766666666 66
Q ss_pred cccccCCCcEEEecCCC
Q 009713 473 SLHLYPTPHAIVLADKS 489 (528)
Q Consensus 473 ~L~L~p~Pdvlil~d~~ 489 (528)
.....+.|.-+++||.-
T Consensus 363 ~~~d~~aPvyI~~G~~G 379 (452)
T KOG1378|consen 363 HLVDGMAPIYITVGDGG 379 (452)
T ss_pred cccCCCCCEEEEEccCC
Confidence 77778888888888764
No 184
>PLN00208 translation initiation factor (eIF); Provisional
Probab=29.07 E-value=1.9e+02 Score=26.71 Aligned_cols=47 Identities=4% Similarity=0.055 Sum_probs=32.4
Q ss_pred EEEEEEEEc-CCCcEEEEeCCcEEEE-EeccccccceeeccCeEEEEEE
Q 009713 181 WVMGVISQL-EDGHFYLEDLAASVEI-DLSKAKITTGFFTENTIVVAEG 227 (528)
Q Consensus 181 ~vlGml~~~-~~g~~~LED~sg~V~L-dls~~~~~~g~f~~G~vV~veG 227 (528)
-++|.|... ..|.+.++..+|...| .++......-++.+|++|+|+.
T Consensus 33 q~~g~V~~~lGn~~~~V~c~dG~~rLa~IpGKmRKrIWI~~GD~VlVel 81 (145)
T PLN00208 33 QEYAQVLRMLGNGRCEALCIDGTKRLCHIRGKMRKKVWIAAGDIILVGL 81 (145)
T ss_pred cEEEEEEEEcCCCEEEEEECCCCEEEEEEeccceeeEEecCCCEEEEEc
Confidence 366777664 5778889988885555 3443211257889999999983
No 185
>PRK13480 3'-5' exoribonuclease YhaM; Provisional
Probab=28.42 E-value=2.3e+02 Score=29.47 Aligned_cols=74 Identities=20% Similarity=0.334 Sum_probs=47.1
Q ss_pred ecccccCCCCcE-EEEEEEEE-----cCCCc----EEEEeCCcEEEEEecccc-ccceeeccCeEEEEEEEEee-CCe--
Q 009713 169 TIQSLVGQTGRR-WVMGVISQ-----LEDGH----FYLEDLAASVEIDLSKAK-ITTGFFTENTIVVAEGEMLV-DGI-- 234 (528)
Q Consensus 169 ~I~~Llg~~g~~-~vlGml~~-----~~~g~----~~LED~sg~V~Ldls~~~-~~~g~f~~G~vV~veG~~~~-~g~-- 234 (528)
.|+.| ..|+. ..+.+|.+ .++|+ +.|+|.||+|+-.+=+.. .....|.+|.+|-|+|.... .|.
T Consensus 4 ~i~~l--~~g~~v~~~~lv~~~~~~~~knG~~yl~l~l~D~tG~I~ak~W~~~~~~~~~~~~g~vv~v~G~v~~y~g~~Q 81 (314)
T PRK13480 4 GIEEL--EVGEQVDHFLLIKSATKGVASNGKPFLTLILQDKSGDIEAKLWDVSPEDEATYVPETIVHVKGDIINYRGRKQ 81 (314)
T ss_pred hHhhc--CCCCEeeEEEEEEEceeeecCCCCeEEEEEEEcCCcEEEEEeCCCChhhHhhcCCCCEEEEEEEEEEECCcce
Confidence 34555 33443 45666664 34575 368999999987653321 12456789999999999853 454
Q ss_pred EEEEEecCCC
Q 009713 235 FQVITCGFPP 244 (528)
Q Consensus 235 F~V~~i~~Pp 244 (528)
+.+..|..+.
T Consensus 82 l~i~~i~~~~ 91 (314)
T PRK13480 82 LKVNQIRLAT 91 (314)
T ss_pred EEEEEeEECC
Confidence 5666775443
No 186
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=28.26 E-value=1.4e+02 Score=32.68 Aligned_cols=69 Identities=16% Similarity=0.172 Sum_probs=41.6
Q ss_pred hHHHHHHHH-HHHhcCC--ccCHHHHHHHHHhhccCCCChHHHHHHHHHHHhcccCCCcceeeHHHHHHHHHHH
Q 009713 3 GQTRKKIQK-KMKIRGY--GLRMDALDEILSFVNRFPDAEDEAIDLLLDQFEHESSLKSSIIDKESVNRVTSVL 73 (528)
Q Consensus 3 ~~~r~~i~~-~fk~~gl--~l~~~al~~l~~~~~~~~~~~~~~~~~~~~~i~k~~~~~~~~vd~~~l~~~~~~~ 73 (528)
.+.|..|++ .++.+|+ .+..+++++|++.+....-.-..++++++ ..... ...+..||.+.++++++++
T Consensus 277 ~e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~~l~-~~a~~-~~~~~~it~~~v~~~l~~~ 348 (450)
T PRK14087 277 NKTATAIIKKEIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVSRLN-FWSQQ-NPEEKIITIEIVSDLFRDI 348 (450)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHHHHH-HHHhc-ccCCCCCCHHHHHHHHhhc
Confidence 355555554 5577886 79999999999865432111123344443 11111 0123568999999999876
No 187
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=28.20 E-value=1.3e+02 Score=32.20 Aligned_cols=63 Identities=21% Similarity=0.160 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHhcCCccCHHHHHHHHHhhccCCCChHHHHHHHHHHHhccc--CCCcceeeHHHHHHHH
Q 009713 4 QTRKKIQKKMKIRGYGLRMDALDEILSFVNRFPDAEDEAIDLLLDQFEHES--SLKSSIIDKESVNRVT 70 (528)
Q Consensus 4 ~~r~~i~~~fk~~gl~l~~~al~~l~~~~~~~~~~~~~~~~~~~~~i~k~~--~~~~~~vd~~~l~~~~ 70 (528)
++++.+.+.+++.|+.+..+|++.|++..+. +...+...++.+.-.. ...+..|+.+.|++++
T Consensus 190 ei~~~l~~~~~~~g~~i~~~al~~l~~~s~g----~lr~a~~~L~kl~~~~~~~~~~~~It~~~v~~~v 254 (397)
T PRK14955 190 EIQQQLQGICEAEGISVDADALQLIGRKAQG----SMRDAQSILDQVIAFSVESEGEGSIRYDKVAELL 254 (397)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----CHHHHHHHHHHHHHhccccCCCCccCHHHHHHHH
Confidence 6678888889999999999999999987542 2233333333322110 0234467777766655
No 188
>PRK01889 GTPase RsgA; Reviewed
Probab=28.16 E-value=3.7e+02 Score=28.30 Aligned_cols=46 Identities=9% Similarity=0.024 Sum_probs=33.2
Q ss_pred EEEEEEEcCCCcEEEEeCCcEEEEEeccccc-----cceeeccCeEEEEEE
Q 009713 182 VMGVISQLEDGHFYLEDLAASVEIDLSKAKI-----TTGFFTENTIVVAEG 227 (528)
Q Consensus 182 vlGml~~~~~g~~~LED~sg~V~Ldls~~~~-----~~g~f~~G~vV~veG 227 (528)
..|+|.....|.|++++.+|.+...++.... ..+..+.|+.|.++.
T Consensus 29 ~~g~v~~~~~~~~~v~~~~~~~~~~~~gk~~~~~~~~~~~~~vGD~V~~~~ 79 (356)
T PRK01889 29 EPGRVVEEHRSGYVVATEEGEVRAEVSGKWRHEAFPPGDRPAVGDWVLLDN 79 (356)
T ss_pred ccEEEEEEECCEEEEEECCcEEEEEecchhhccccccCCCCccCcEEEEec
Confidence 4688888888889999888877666554211 125567899999974
No 189
>COG1190 LysU Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=27.89 E-value=1.7e+02 Score=32.45 Aligned_cols=61 Identities=21% Similarity=0.286 Sum_probs=41.5
Q ss_pred EEEEEEEEEcC-CCc---EEEEeCCcEEEEEeccccccceee-------ccCeEEEEEEEEeeC--Ce--EEEEEe
Q 009713 180 RWVMGVISQLE-DGH---FYLEDLAASVEIDLSKAKITTGFF-------TENTIVVAEGEMLVD--GI--FQVITC 240 (528)
Q Consensus 180 ~~vlGml~~~~-~g~---~~LED~sg~V~Ldls~~~~~~g~f-------~~G~vV~veG~~~~~--g~--F~V~~i 240 (528)
+.+-|.|...+ .|+ +.|+|.+|+|+|-+++.....+.| --|+||+|+|..-.. |. ..|+++
T Consensus 64 v~vAGRi~~~R~~GK~~F~~i~d~~gkiQ~yi~k~~~~~~~~~~~~~~~dlGDiigv~G~~~~T~~GelSv~v~~~ 139 (502)
T COG1190 64 VSVAGRIMTIRNMGKASFADLQDGSGKIQLYVNKDEVGEEVFEALFKKLDLGDIIGVEGPLFKTKTGELSVSVEEL 139 (502)
T ss_pred eEEecceeeecccCceeEEEEecCCceEEEEEeccccchhhHHHHHhccccCCEEeeeeeeeecCCCceEEEEEEE
Confidence 66777776554 454 579999999999888553222221 259999999998532 43 456666
No 190
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=27.78 E-value=2.5e+02 Score=28.85 Aligned_cols=89 Identities=19% Similarity=0.296 Sum_probs=52.1
Q ss_pred HHHHHHHhcccCCCCCCeEEEEEc-cCCCCCCCCCCcchhHHH--HHHHHHHHHHHcC-CCCCCceeEEEecCCCCCCCC
Q 009713 301 GKLEVVLDGFESVEVVPSLFVFMG-NFCSHPCNLSFHSFSSLR--LQFGKLGQMIAAH-PRLKEHSRFLFIPGPDDAGPS 376 (528)
Q Consensus 301 e~L~~ll~~~~~~~~~P~~~Vl~G-~F~s~~~~~~~~~~~~~~--~~f~~la~~l~~~-p~l~~~~~~v~VPG~~Dp~~~ 376 (528)
+.+.+|+..| +|+.+|++| |-+.+.. .+..+...|+ .+|=+--....+| |++ =..|+.-|. +.
T Consensus 144 ~~i~~Ll~~~-----~PDIlViTGHD~~~K~~-~d~~dl~~YrnSkyFVeaV~~aR~~ep~~---D~LVIfAGA---CQ- 210 (287)
T PF05582_consen 144 EKIYRLLEEY-----RPDILVITGHDGYLKNK-KDYSDLNNYRNSKYFVEAVKEARKYEPNL---DDLVIFAGA---CQ- 210 (287)
T ss_pred HHHHHHHHHc-----CCCEEEEeCchhhhcCC-CChhhhhhhhccHHHHHHHHHHHhcCCCc---ccEEEEcch---hH-
Confidence 4445555544 799999999 4443321 1223445665 4665555555555 443 366666664 43
Q ss_pred CCCCCCCCchhhHHHHhhhCCceEEecCCeEEEEccEE
Q 009713 377 TVLPRCALPKYLTEELQKYIPNAIFSSNPCRIKFYTQE 414 (528)
Q Consensus 377 ~~lPqpplp~~~~~~l~~~~~n~~~~sNPcri~~~~~e 414 (528)
++ ++.+.+ -.+-|+|.|.|+-++-.+
T Consensus 211 ---------S~-fEall~--AGANFASSP~RVlIHalD 236 (287)
T PF05582_consen 211 ---------SH-FEALLE--AGANFASSPKRVLIHALD 236 (287)
T ss_pred ---------HH-HHHHHH--cCccccCCccceEEeccC
Confidence 12 233321 468999999999998643
No 191
>KOG0371 consensus Serine/threonine protein phosphatase 2A, catalytic subunit [Signal transduction mechanisms]
Probab=27.64 E-value=2e+02 Score=29.22 Aligned_cols=71 Identities=14% Similarity=0.279 Sum_probs=39.5
Q ss_pred CeEEEEeCCccCcHhHHHHHHHHHhcccCCCCCCeEEEEEccCCCCCCCCCCcchhHHHHHHHHHHHHHHcCCCCCCcee
Q 009713 284 DMFVILSDIWLDNEEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHSR 363 (528)
Q Consensus 284 ~~~v~lSdv~ld~~~~le~L~~ll~~~~~~~~~P~~~Vl~G~F~s~~~~~~~~~~~~~~~~f~~la~~l~~~p~l~~~~~ 363 (528)
.-++|.+|||=. +..|-+||. .-.. .+-.-.+|||||++.-.. +.+... -|-.+=-+|| -+
T Consensus 60 ~pvtvcGDvHGq----f~dl~ELfk-iGG~-~pdtnylfmGDyvdrGy~----SvetVS----~lva~Kvry~-----~r 120 (319)
T KOG0371|consen 60 CPVTVCGDVHGQ----FHDLIELFK-IGGL-APDTNYLFMGDYVDRGYY----SVETVS----LLVALKVRYP-----DR 120 (319)
T ss_pred cceEEecCcchh----HHHHHHHHH-ccCC-CCCcceeeeeeecccccc----hHHHHH----HHHHhhcccc-----ce
Confidence 357788999822 233444552 3222 234578999999997321 111111 1111112345 48
Q ss_pred EEEecCCCCC
Q 009713 364 FLFIPGPDDA 373 (528)
Q Consensus 364 ~v~VPG~~Dp 373 (528)
+-+++|||.-
T Consensus 121 vtilrGNHEs 130 (319)
T KOG0371|consen 121 VTILRGNHES 130 (319)
T ss_pred eEEecCchHH
Confidence 8899999986
No 192
>smart00576 BTP Bromodomain transcription factors and PHD domain containing proteins. subdomain of archael histone-like transcription factors
Probab=27.46 E-value=2.6e+02 Score=22.48 Aligned_cols=63 Identities=14% Similarity=0.177 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHhcCC-ccCHHHHHHHHHhhccCCCChHHHHHHHHHHHhcccCC-CcceeeHHHHHHHHHHH
Q 009713 4 QTRKKIQKKMKIRGY-GLRMDALDEILSFVNRFPDAEDEAIDLLLDQFEHESSL-KSSIIDKESVNRVTSVL 73 (528)
Q Consensus 4 ~~r~~i~~~fk~~gl-~l~~~al~~l~~~~~~~~~~~~~~~~~~~~~i~k~~~~-~~~~vd~~~l~~~~~~~ 73 (528)
-+|..|-+.++..|+ ..+++|++.|++.+.++ +..+.....+..+. +-.-++...|+.++.++
T Consensus 7 ll~~~Vaqil~~~Gf~~~~~sale~ltdi~~~y-------l~~l~~~~~~~a~~agR~~~~~~Dv~~Al~~~ 71 (77)
T smart00576 7 LLRIAVAQILESAGFDSFQESALETLTDILQSY-------IQELGRTAHSYAELAGRTEPNLGDVVLALENL 71 (77)
T ss_pred HHHHHHHHHHHHcCccccCHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 467888899999996 68999999999765332 33333222221111 11234566677777664
No 193
>TIGR00523 eIF-1A eukaryotic/archaeal initiation factor 1A. Recommended nomenclature: eIF-1A for eukaryotes, aIF-1A for Archaea. Also called eIF-4C
Probab=26.25 E-value=2.3e+02 Score=24.34 Aligned_cols=45 Identities=18% Similarity=0.317 Sum_probs=31.1
Q ss_pred EEEEEEEEc-CCCcEEEEeCCcEEEE-EeccccccceeeccCeEEEE
Q 009713 181 WVMGVISQL-EDGHFYLEDLAASVEI-DLSKAKITTGFFTENTIVVA 225 (528)
Q Consensus 181 ~vlGml~~~-~~g~~~LED~sg~V~L-dls~~~~~~g~f~~G~vV~v 225 (528)
-++|.+.+. .++.|.++.++|...| .++.-....-++.+|++|+|
T Consensus 20 e~~g~V~~~lG~~~~~V~~~dG~~~la~i~GK~Rk~iwI~~GD~VlV 66 (99)
T TIGR00523 20 EILGVIEQMLGAGRVKVRCLDGKTRLGRIPGKLKKRIWIREGDVVIV 66 (99)
T ss_pred EEEEEEEEEcCCCEEEEEeCCCCEEEEEEchhhcccEEecCCCEEEE
Confidence 477777765 5677888988885444 45432223567789999999
No 194
>cd07410 MPP_CpdB_N Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain. CpdB is a bacterial periplasmic protein with an N-terminal metallophosphatase domain and a C-terminal 3'-nucleotidase domain. This alignment model represents the N-terminal metallophosphatase domain, which has 2',3'-cyclic phosphodiesterase activity, hydrolyzing the 2',3'-cyclic phosphates of adenosine, guanosine, cytosine and uridine to yield nucleoside and phosphate. CpdB also hydrolyzes the chromogenic substrates p-nitrophenyl phosphate (PNPP), bis(PNPP) and p-nitrophenyl phosphorylcholine (NPPC). CpdB is thought to play a scavenging role during RNA hydrolysis by converting the non-transportable nucleotides produced by RNaseI to nucleosides which can easily enter a cell for use as a carbon source. This family also includes YfkN, a Bacillus subtilis nucleotide phosphoesterase with two copies of each of the metallophosphatase and 3'-nucleotidase domains. The N-terminal metallophos
Probab=26.02 E-value=83 Score=31.62 Aligned_cols=48 Identities=15% Similarity=0.245 Sum_probs=34.9
Q ss_pred CCCcEEEecCCCCcceE-EeCCeEEEcCCCCCCCcEEE--EEECCCCeEEe
Q 009713 478 PTPHAIVLADKSEQKAF-KYTGITCFNPGSFSSDSTFV--AYRPCTQEVEF 525 (528)
Q Consensus 478 p~Pdvlil~d~~~~f~~-~y~gc~~vNpGsf~~~~sf~--~y~p~~~~~e~ 525 (528)
|--|+++-||+|..+.. .++++.++++|+....-..+ .+++.+++.+.
T Consensus 217 ~~vD~IlgGHsH~~~~~~~~~~~~v~q~g~~g~~vg~l~l~~~~~~~~~~i 267 (277)
T cd07410 217 PGIDAILTGHQHRRFPGPTVNGVPVVQPGNWGSHLGVIDLTLEKDDGKWKV 267 (277)
T ss_pred CCCcEEEeCCCccccccCCcCCEEEEcCChhhCEEEEEEEEEEEcCCEEEE
Confidence 66799999999987766 78999999999985433332 45566664443
No 195
>PRK03932 asnC asparaginyl-tRNA synthetase; Validated
Probab=24.99 E-value=2.5e+02 Score=30.68 Aligned_cols=61 Identities=18% Similarity=0.192 Sum_probs=41.1
Q ss_pred EEEEEEEEEcCC-Cc---EEEEeCCcEEEEEeccccc----c-ceeeccCeEEEEEEEEeeC----C--eEEEEEe
Q 009713 180 RWVMGVISQLED-GH---FYLEDLAASVEIDLSKAKI----T-TGFFTENTIVVAEGEMLVD----G--IFQVITC 240 (528)
Q Consensus 180 ~~vlGml~~~~~-g~---~~LED~sg~V~Ldls~~~~----~-~g~f~~G~vV~veG~~~~~----g--~F~V~~i 240 (528)
+.|-|.|...+. |+ +.|.|.+|.+++.+..... . ..-+..|++|.|+|+.... | ..+|.++
T Consensus 19 V~i~G~v~~~R~~g~~~Fi~lrD~~g~iq~~~~~~~~~~~~~~~~~l~~~s~v~v~G~v~~~~~~~~~~el~~~~i 94 (450)
T PRK03932 19 VTVRGWVRTKRDSGKIAFLQLRDGSCFKQLQVVKDNGEEYFEEIKKLTTGSSVIVTGTVVESPRAGQGYELQATKI 94 (450)
T ss_pred EEEEEEEEEEEeCCCeEEEEEECCCCcEEEEEEcCCChHHHHHHhcCCCCcEEEEEEEEEcCCCCCCCEEEEEEEE
Confidence 589999987653 54 4788999988776543210 0 1235899999999988642 1 2566666
No 196
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=24.95 E-value=2.8e+02 Score=28.34 Aligned_cols=107 Identities=19% Similarity=0.337 Sum_probs=59.1
Q ss_pred HHHHHHHhcccCCCCCCeEEEEEc-cCCCCCCCCCCcchhHHH--HHHHHHHHHHHcC-CCCCCceeEEEecCCCCCCCC
Q 009713 301 GKLEVVLDGFESVEVVPSLFVFMG-NFCSHPCNLSFHSFSSLR--LQFGKLGQMIAAH-PRLKEHSRFLFIPGPDDAGPS 376 (528)
Q Consensus 301 e~L~~ll~~~~~~~~~P~~~Vl~G-~F~s~~~~~~~~~~~~~~--~~f~~la~~l~~~-p~l~~~~~~v~VPG~~Dp~~~ 376 (528)
+....|+..| +|+.+|++| |-+.+.. .+..+...|+ .+|=+--....+| |++ =+.|+.-|. +.
T Consensus 143 ~~i~~Ll~~~-----~PDIlViTGHD~~~K~~-~d~~dl~~YrnSkyFVeaVk~aR~y~~~~---D~LVIFAGA---CQ- 209 (283)
T TIGR02855 143 EKVLDLIEEV-----RPDILVITGHDAYSKNK-GNYMDLNAYRHSKYFVETVREARKYVPSL---DQLVIFAGA---CQ- 209 (283)
T ss_pred HHHHHHHHHh-----CCCEEEEeCchhhhcCC-CChhhhhhhhhhHHHHHHHHHHHhcCCCc---ccEEEEcch---hH-
Confidence 4555566654 799999999 5444321 1123345555 4565544445554 443 355665554 32
Q ss_pred CCCCCCCCchhhHHHHhhhCCceEEecCCeEEEEccEE-------EEEEe-hHH--HHHHhhcccC
Q 009713 377 TVLPRCALPKYLTEELQKYIPNAIFSSNPCRIKFYTQE-------IVFFR-QDL--LYRMRRSCLI 432 (528)
Q Consensus 377 ~~lPqpplp~~~~~~l~~~~~n~~~~sNPcri~~~~~e-------Ivi~r-dDl--~~~l~r~~i~ 432 (528)
++| +.+.+ -.+-|+|.|.|+-++-.+ |..++ ++. +.+.-+|+|.
T Consensus 210 ---------S~y-Eall~--AGANFASSP~RVlIHalDPV~i~eKia~T~i~~~V~i~dvi~nTIT 263 (283)
T TIGR02855 210 ---------SHF-ESLIR--AGANFASSPSRVNIHALDPVYIVEKISFTPFMERVNIWEVLRNTIT 263 (283)
T ss_pred ---------HHH-HHHHH--cCccccCCccceEEeccCcceeEEeeeeccccceecHHHHHhhccc
Confidence 222 33321 468999999999998643 33333 222 5556666663
No 197
>PLN03025 replication factor C subunit; Provisional
Probab=24.32 E-value=1.8e+02 Score=29.98 Aligned_cols=28 Identities=11% Similarity=0.118 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHhcCCccCHHHHHHHHHh
Q 009713 4 QTRKKIQKKMKIRGYGLRMDALDEILSF 31 (528)
Q Consensus 4 ~~r~~i~~~fk~~gl~l~~~al~~l~~~ 31 (528)
++++.+.+.+++.|+.+.++|+++|++.
T Consensus 162 ~l~~~L~~i~~~egi~i~~~~l~~i~~~ 189 (319)
T PLN03025 162 EILGRLMKVVEAEKVPYVPEGLEAIIFT 189 (319)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 6677888888999999999999999875
No 198
>PRK07135 dnaE DNA polymerase III DnaE; Validated
Probab=24.29 E-value=1.2e+02 Score=36.45 Aligned_cols=70 Identities=10% Similarity=0.072 Sum_probs=46.8
Q ss_pred eecccccCCCCc-EEEEEEEEEc----CCCc----EEEEeCCcEEEEEeccccc-cceeeccCeEEEEEEEEeeCCeEEE
Q 009713 168 STIQSLVGQTGR-RWVMGVISQL----EDGH----FYLEDLAASVEIDLSKAKI-TTGFFTENTIVVAEGEMLVDGIFQV 237 (528)
Q Consensus 168 t~I~~Llg~~g~-~~vlGml~~~----~~g~----~~LED~sg~V~Ldls~~~~-~~g~f~~G~vV~veG~~~~~g~F~V 237 (528)
+++..| ..++ +.+.|||+.. +.|+ +.|||.+|.+++.+-.... ....+..|.++.++|....++.|+.
T Consensus 889 ~~~~~l--~~~~~~~v~g~i~~~~~~~K~g~~maf~~~eD~~~~~e~~~F~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 966 (973)
T PRK07135 889 IRLKDL--RINTEYRLAIEVKNVKRLRKANKEYKKVILSDDSVEITIFVNDNDYLLFETLKKGDIYEFLISKSKNNKFYI 966 (973)
T ss_pred hhHHHh--cCCCeEEEEEEEEEEEEEeeCCCeEEEEEEEECCCcEEEEEcHHHHHHHHHhhcCCEEEEEEEEcCCCceEe
Confidence 455555 2333 4799999852 3454 4799999999997532211 1112457889999999988888875
Q ss_pred EE
Q 009713 238 IT 239 (528)
Q Consensus 238 ~~ 239 (528)
..
T Consensus 967 ~~ 968 (973)
T PRK07135 967 IN 968 (973)
T ss_pred cc
Confidence 43
No 199
>COG0361 InfA Translation initiation factor 1 (IF-1) [Translation, ribosomal structure and biogenesis]
Probab=24.25 E-value=2.9e+02 Score=22.61 Aligned_cols=48 Identities=17% Similarity=0.192 Sum_probs=33.3
Q ss_pred EEEEEEEE-cCCCcEEEEeCCcEEEE-Eeccc-cccceeeccCeEEEEEEE
Q 009713 181 WVMGVISQ-LEDGHFYLEDLAASVEI-DLSKA-KITTGFFTENTIVVAEGE 228 (528)
Q Consensus 181 ~vlGml~~-~~~g~~~LED~sg~V~L-dls~~-~~~~g~f~~G~vV~veG~ 228 (528)
.+.|.+.+ .+++.|.++=++|.+.+ .++.- ..+.-++.||++|+|+=.
T Consensus 8 e~~g~V~e~L~~~~f~v~~edg~~~~ahI~GKmr~~~i~I~~GD~V~Ve~~ 58 (75)
T COG0361 8 EMEGTVIEMLPNGRFRVELENGHERLAHISGKMRKNRIRILPGDVVLVELS 58 (75)
T ss_pred EEEEEEEEecCCCEEEEEecCCcEEEEEccCcchheeEEeCCCCEEEEEec
Confidence 57787776 46788888877886655 35532 223567789999999743
No 200
>PF07524 Bromo_TP: Bromodomain associated; InterPro: IPR006565 This bromodomain is found in eukaryotic transcription factors and PHD domain containing proteins (IPR001965 from INTERPRO). The tandem PHD finger-bromodomain is found in many chromatin-associated proteins. It is involved in gene silencing by the human co-repressor KRAB-associated protein 1 (KAP1). The tandem PHD finger-bromodomain of KAP1 has a distinct structure that joins the two protein modules. The first helix, alpha(Z), of an atypical bromodomain forms the central hydrophobic core that anchors the other three helices of the bromodomain on one side and the zinc binding PHD finger on the other []. The Rap1 GTPase-activating protein, Sipa1, is modulated by the cellular bromodomain protein, Brd4. Brd4 belongs to the BET family and is a multifunctional protein involved in transcription, replication, the signal transduction pathway, and cell cycle progression. All of these functions are linked to its association with acetylated chromatin. It has tandem bromodomains []. The dysregulation of the Brd4-associated pathways may play an important role in breast cancer progression []. Bovine papillomavirus type 1 E2 also binds to chromosomes in a complex with Brd4. Interaction with Brd4 is additionally important for E2-mediated transcriptional regulation [, ].
Probab=24.17 E-value=3.7e+02 Score=21.39 Aligned_cols=31 Identities=23% Similarity=0.432 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHhcCC-ccCHHHHHHHHHhhcc
Q 009713 4 QTRKKIQKKMKIRGY-GLRMDALDEILSFVNR 34 (528)
Q Consensus 4 ~~r~~i~~~fk~~gl-~l~~~al~~l~~~~~~ 34 (528)
.+|+.|-+.++..|+ ..++.|++.|++.+..
T Consensus 7 ~l~~~va~il~~~GF~~~~~~al~~Ltdi~~~ 38 (77)
T PF07524_consen 7 LLRRSVAQILKHAGFDSASPSALDTLTDILQR 38 (77)
T ss_pred HHHHHHHHHHHHcCccccCHHHHHHHHHHHHH
Confidence 578888889999999 5999999999986533
No 201
>PF13309 HTH_22: HTH domain
Probab=24.01 E-value=1.2e+02 Score=23.76 Aligned_cols=34 Identities=18% Similarity=0.237 Sum_probs=30.4
Q ss_pred CChHHHHHHHHHHHhcCCccCHHHHHHHHHhhcc
Q 009713 1 MSGQTRKKIQKKMKIRGYGLRMDALDEILSFVNR 34 (528)
Q Consensus 1 m~~~~r~~i~~~fk~~gl~l~~~al~~l~~~~~~ 34 (528)
|+.+.|..|++.+...|+-.=..|...+++.|+=
T Consensus 21 l~~~~k~~iV~~L~~~G~F~lKgav~~vA~~L~i 54 (64)
T PF13309_consen 21 LSKEEKKEIVRQLYEKGIFLLKGAVEYVAEKLGI 54 (64)
T ss_pred CCHHHHHHHHHHHHHCCCcccCcHHHHHHHHHCC
Confidence 6678899999999999999999999999998754
No 202
>cd07380 MPP_CWF19_N Schizosaccharomyces pombe CWF19 and related proteins, N-terminal metallophosphatase domain. CWF19 cell cycle control protein (also known as CWF19-like 1 (CWF19L1) in Homo sapiens), N-terminal metallophosphatase domain. CWF19 contains C-terminal domains similar to that found in the CwfJ cell cycle control protein. The metallophosphatase domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site
Probab=23.52 E-value=2.7e+02 Score=25.65 Aligned_cols=67 Identities=12% Similarity=0.113 Sum_probs=37.5
Q ss_pred EEeCCccCcHhHHHHHHHHHhcccCCCCCCeEEEEEccCCCCCCCCCCcchhHHHHHHHHHHHHHHcCCCCCCceeEEEe
Q 009713 288 ILSDIWLDNEEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHSRFLFI 367 (528)
Q Consensus 288 ~lSdv~ld~~~~le~L~~ll~~~~~~~~~P~~~Vl~G~F~s~~~~~~~~~~~~~~~~f~~la~~l~~~p~l~~~~~~v~V 367 (528)
+++|++=.=...+++++++.++ + .+-+++|++|||.+.... . +.+..++.. +...-...+|+
T Consensus 2 V~G~~~G~l~~~~~kv~~~~~k--~--gpFd~~ic~Gdff~~~~~-----~-------~~~~~y~~g--~~~~pipTyf~ 63 (150)
T cd07380 2 VCGDVNGRLKALFEKVNTINKK--K--GPFDALLCVGDFFGDDED-----D-------EELEAYKDG--SKKVPIPTYFL 63 (150)
T ss_pred eeecCCccHHHHHHHHHHHhcc--c--CCeeEEEEecCccCCccc-----h-------hhHHHHhcC--CccCCCCEEEE
Confidence 4566653333455666666442 2 267899999999864221 1 233333332 22334567777
Q ss_pred cCCCC
Q 009713 368 PGPDD 372 (528)
Q Consensus 368 PG~~D 372 (528)
=|++.
T Consensus 64 ggn~~ 68 (150)
T cd07380 64 GGNNP 68 (150)
T ss_pred CCCCC
Confidence 77763
No 203
>PF09415 CENP-X: CENP-S associating Centromere protein X; InterPro: IPR018552 Centromere protein X (CENP-X) is a component of the CENP-S complex. The CENP-S complex is composed of at least of CENP-S and CENP-X and is essential for the stable assembly of the outer kinetchore []. CENP-X is also a DNA-binding component of the Fanconi anemia (FA) core complex involved in DNA damage repair and genome maintenance. The FA complex is composed of CENPS, FANCA, FANCB, FANCC, FANCE, FANCF, FANCG, FANCL/PHF9, FANCM, FAAP24 and CENPX. Interacts with CENPS, FANCM and FAAP24 [, ].; PDB: 4DRB_L 4DRA_H 3V9R_D.
Probab=22.83 E-value=46 Score=26.86 Aligned_cols=57 Identities=16% Similarity=0.194 Sum_probs=32.2
Q ss_pred HHHhcCCccCHHHHHHHHHhhccCCCChHHHHHHHHHHHhcccCCCcceeeHHHHHHHHHHH
Q 009713 12 KMKIRGYGLRMDALDEILSFVNRFPDAEDEAIDLLLDQFEHESSLKSSIIDKESVNRVTSVL 73 (528)
Q Consensus 12 ~fk~~gl~l~~~al~~l~~~~~~~~~~~~~~~~~~~~~i~k~~~~~~~~vd~~~l~~~~~~~ 73 (528)
.|+...-.|+.||++..++|+.-+ - .+++.+-.+ .++. +..+.+|+.++|+++..+|
T Consensus 12 ~f~~~~tkIs~dal~l~~eyl~iF-V--~EAv~Ra~~-~a~~-e~~~~~le~e~LEki~pqL 68 (72)
T PF09415_consen 12 HFKDDKTKISKDALKLSAEYLRIF-V--REAVARAAE-QAEA-EGDEGFLEVEHLEKILPQL 68 (72)
T ss_dssp TSSSTT-EE-CCCHHHHHHHHHHH-H--HHHHHHHHH-HHHH-TT-SSEE-HHHHHHHCHCH
T ss_pred HhcCCCCCcCHHHHHHHHHHHHHH-H--HHHHHHHHH-HHHH-cCCCCCCCHHHHHHHHHHH
Confidence 346678899999999999987321 1 123322222 1122 2334479999999987654
No 204
>cd04474 RPA1_DBD_A RPA1_DBD_A: A subfamily of OB folds corresponding to the second OB fold, the ssDNA-binding domain (DBD)-A, of human RPA1 (also called RPA70). RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). In addition to DBD-A, RPA1 contains three other OB folds: DBD-B, DBD-C, and RPA1N. The major DNA binding activity of human RPA (hRPA) and Saccharomyces cerevisiae RPA (ScRPA) is associated with DBD-A and DBD-B of RPA1. RPA1 DBD-C is involved in trimerization. The ssDNA-binding mechanism is believed to be multistep and to involve conformational change. Although ScRPA and the hRPA have similar ssDNA-binding properties, they differ funct
Probab=22.60 E-value=2.4e+02 Score=23.98 Aligned_cols=49 Identities=8% Similarity=0.124 Sum_probs=31.7
Q ss_pred EEEEEEEEEc----------CCCc---EEEEeC-CcEEEEEeccccc--cceeeccCeEEEEEEE
Q 009713 180 RWVMGVISQL----------EDGH---FYLEDL-AASVEIDLSKAKI--TTGFFTENTIVVAEGE 228 (528)
Q Consensus 180 ~~vlGml~~~----------~~g~---~~LED~-sg~V~Ldls~~~~--~~g~f~~G~vV~veG~ 228 (528)
..+.|+|... .+|+ +.|-|+ +|.|.+.+-.... -...+.+|+++-+.|-
T Consensus 12 ~~I~~rV~~k~~~~~f~~~~~~g~~~~~~l~De~~~~I~~t~~~~~~~~f~~~l~eG~vy~i~~~ 76 (104)
T cd04474 12 WTIKARVTNKSDIRTWSNARGEGKLFSFDLLDEDGGEIRATFFNDAVDKFYDLLEVGKVYYISKG 76 (104)
T ss_pred EEEEEEEeeccccccccCCCCCcEEEEEEEEECCCCEEEEEEehHHHHHhhcccccccEEEEecc
Confidence 3688888742 1354 468899 8899997653211 1356678888887653
No 205
>PTZ00329 eukaryotic translation initiation factor 1A; Provisional
Probab=22.44 E-value=2.9e+02 Score=25.79 Aligned_cols=47 Identities=4% Similarity=0.037 Sum_probs=32.2
Q ss_pred EEEEEEEEc-CCCcEEEEeCCcEEEE-EeccccccceeeccCeEEEEEE
Q 009713 181 WVMGVISQL-EDGHFYLEDLAASVEI-DLSKAKITTGFFTENTIVVAEG 227 (528)
Q Consensus 181 ~vlGml~~~-~~g~~~LED~sg~V~L-dls~~~~~~g~f~~G~vV~veG 227 (528)
-++|.|+.. ++|.+.++..+|...| .++......-++.+|.+|+|+.
T Consensus 33 q~~g~V~~~LGn~~f~V~c~dG~~rLa~I~GKmRK~IWI~~GD~VlVel 81 (155)
T PTZ00329 33 QEYAQVLRMLGNGRLEAYCFDGVKRLCHIRGKMRKRVWINIGDIILVSL 81 (155)
T ss_pred cEEEEEEEEcCCCEEEEEECCCCEEEEEeeccceeeEEecCCCEEEEec
Confidence 356666654 6788888988885555 4543222247889999999975
No 206
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=22.32 E-value=1.9e+02 Score=31.84 Aligned_cols=61 Identities=21% Similarity=0.164 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHhcCCccCHHHHHHHHHhhccCCCChHHHHHHHHHHHhcccCCCcceeeHHHHHHHHH
Q 009713 4 QTRKKIQKKMKIRGYGLRMDALDEILSFVNRFPDAEDEAIDLLLDQFEHESSLKSSIIDKESVNRVTS 71 (528)
Q Consensus 4 ~~r~~i~~~fk~~gl~l~~~al~~l~~~~~~~~~~~~~~~~~~~~~i~k~~~~~~~~vd~~~l~~~~~ 71 (528)
++++.+.+.++..|+.+..+|+++|++..+ |.-+.+ -.+++.+.... . + -||.+.+++++.
T Consensus 180 el~~~L~~i~~~egi~i~~eal~~Ia~~s~---GdlR~a-ln~Le~l~~~~-~-~-~It~e~V~~~l~ 240 (472)
T PRK14962 180 LIIKRLQEVAEAEGIEIDREALSFIAKRAS---GGLRDA-LTMLEQVWKFS-E-G-KITLETVHEALG 240 (472)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHhC---CCHHHH-HHHHHHHHHhc-C-C-CCCHHHHHHHHc
Confidence 567778888889999999999999998642 221222 22233332221 1 1 278877776653
No 207
>PRK15491 replication factor A; Provisional
Probab=22.26 E-value=2e+02 Score=30.69 Aligned_cols=64 Identities=13% Similarity=0.160 Sum_probs=44.1
Q ss_pred ceeecccccCCCCcEEEEEEEEEc-----------CCCcE---EEEeCCcEEEEEeccccc---cceeeccCeEEEEEEE
Q 009713 166 EISTIQSLVGQTGRRWVMGVISQL-----------EDGHF---YLEDLAASVEIDLSKAKI---TTGFFTENTIVVAEGE 228 (528)
Q Consensus 166 ~it~I~~Llg~~g~~~vlGml~~~-----------~~g~~---~LED~sg~V~Ldls~~~~---~~g~f~~G~vV~veG~ 228 (528)
.+++|+.|-...+.+.+.|.|... .+|++ .|-|+||+|++.+=+... ..+.+.+|.++-+.|.
T Consensus 56 ~~~kI~dL~~~~~~v~i~arVl~~~~~R~f~r~dGs~g~v~~~~v~DeTG~ir~tlW~~~a~~~~~~~le~G~v~~I~~~ 135 (374)
T PRK15491 56 DTTKIADINESSSNVNFTAKVVSIFEPKEFNRNDGTTGRVGNIIVADETGSIRLTLWDDLADLIKTGDIEVGKSLNISGY 135 (374)
T ss_pred ccccHHHCCCCCCceEEEEEEeeccCCeeeecCCCCceEEEEEEEEcCCCeEEEEEECchhhhhccCCcCCCCEEEEeee
Confidence 577888885333445788888754 13554 688999999997643221 1255678999999987
Q ss_pred E
Q 009713 229 M 229 (528)
Q Consensus 229 ~ 229 (528)
.
T Consensus 136 ~ 136 (374)
T PRK15491 136 A 136 (374)
T ss_pred e
Confidence 5
No 208
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=22.09 E-value=7.7e+02 Score=24.94 Aligned_cols=55 Identities=13% Similarity=0.059 Sum_probs=35.3
Q ss_pred EEEEEcCCCcEEEEeCCcEEEEEeccccc-cceeeccCeEEEEEEEEeeCCeEEEEEe
Q 009713 184 GVISQLEDGHFYLEDLAASVEIDLSKAKI-TTGFFTENTIVVAEGEMLVDGIFQVITC 240 (528)
Q Consensus 184 Gml~~~~~g~~~LED~sg~V~Ldls~~~~-~~g~f~~G~vV~veG~~~~~g~F~V~~i 240 (528)
|+|.....+.|.+++..+.+...+..... .....+.|+.|.++..- ++...+.+|
T Consensus 1 g~v~~~~~~~~~v~~~~~~~~~~~~g~~~~~~~~~~vGD~V~~~~~~--~~~~~i~~i 56 (287)
T cd01854 1 GRVIAVHGGFYDVETEGGELRCRARGKLRKKGIKPVVGDWVEVEPDD--DGEGVIVRV 56 (287)
T ss_pred CEEEEEECCEEEEEECCeEEEEEeccccccCCCCccCCCEEEEEecC--CCcEEEEEE
Confidence 55666666788898887777777654321 11235789999998532 344556555
No 209
>PF10451 Stn1: Telomere regulation protein Stn1; InterPro: IPR018856 The budding yeast protein Stn1 is a DNA-binding protein which has specificity for telomeric DNA. Structural profiling has predicted an OB-fold []. This entry represents the N-terminal part of the molecule, which adopts the OB fold. Protection of telomeres by multiple proteins with OB-fold domains is conserved in eukaryotic evolution [].; PDB: 3KF6_A 3KF8_A.
Probab=22.01 E-value=2.7e+02 Score=28.11 Aligned_cols=63 Identities=14% Similarity=0.268 Sum_probs=39.3
Q ss_pred EEEEEEEEcC------CCc--EEEEeCCc--EEEEEeccccc-----cceeeccCeEEEEEEEEeeCC-eEEEEEecCCC
Q 009713 181 WVMGVISQLE------DGH--FYLEDLAA--SVEIDLSKAKI-----TTGFFTENTIVVAEGEMLVDG-IFQVITCGFPP 244 (528)
Q Consensus 181 ~vlGml~~~~------~g~--~~LED~sg--~V~Ldls~~~~-----~~g~f~~G~vV~veG~~~~~g-~F~V~~i~~Pp 244 (528)
.|+|+|.-.. ++. |.|.|.|| .|...+++... ..+-. .|++|-|.|....+- .+.|..|.++.
T Consensus 70 ~i~G~Vv~~~~~~~~~~~~~~l~iDD~Sg~~~i~~~~~~~~~~~~~l~~~~~-~G~~V~VkG~vsr~~~ql~ve~i~~~~ 148 (256)
T PF10451_consen 70 RIVGVVVGIDYKWIENEDRIILTIDDSSGANTIECKCSKSSYLSMGLPINDL-IGKVVEVKGTVSRNERQLDVERIELVR 148 (256)
T ss_dssp EEEEEEEEEEEEE-BBTCEEEEEEE-SSCS-EEEEEEEHHHHHCCCHHCTT--TT-EEEEEEEEESSSEEEEEEEEEEET
T ss_pred EEEEEEEEEEEEeecccceEEEEEeCCCCceeEEEEEEcccccccCCCccCC-CCcEEEEEEEEccCcEEEEEEEEEccC
Confidence 5777776432 333 57889999 77776664311 11222 799999999997332 48888888654
No 210
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=21.52 E-value=2.9e+02 Score=30.15 Aligned_cols=60 Identities=18% Similarity=0.077 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHhcCCccCHHHHHHHHHhhccCCCChHHHHHHHHHHHhcccCCCcceeeHHHHHHHH
Q 009713 4 QTRKKIQKKMKIRGYGLRMDALDEILSFVNRFPDAEDEAIDLLLDQFEHESSLKSSIIDKESVNRVT 70 (528)
Q Consensus 4 ~~r~~i~~~fk~~gl~l~~~al~~l~~~~~~~~~~~~~~~~~~~~~i~k~~~~~~~~vd~~~l~~~~ 70 (528)
++++.+.+.+++.|+.+..+|++.|++..+. +...+..+++.+.... . .-|+.+.|++++
T Consensus 184 el~~~L~~~~~~eg~~i~~~al~~L~~~s~g----dlr~a~~~Lekl~~~~-~--~~It~~~V~~l~ 243 (451)
T PRK06305 184 TIIDKLALIAKQEGIETSREALLPIARAAQG----SLRDAESLYDYVVGLF-P--KSLDPDSVAKAL 243 (451)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----CHHHHHHHHHHHHHhc-c--CCcCHHHHHHHH
Confidence 5677888888999999999999999986532 2333333344333221 1 226777766554
No 211
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=21.40 E-value=2e+02 Score=31.91 Aligned_cols=60 Identities=15% Similarity=0.086 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHhcCCccCHHHHHHHHHhhccCCCChHHHHHHHHHHHhcccCCCcceeeHHHHHHHH
Q 009713 4 QTRKKIQKKMKIRGYGLRMDALDEILSFVNRFPDAEDEAIDLLLDQFEHESSLKSSIIDKESVNRVT 70 (528)
Q Consensus 4 ~~r~~i~~~fk~~gl~l~~~al~~l~~~~~~~~~~~~~~~~~~~~~i~k~~~~~~~~vd~~~l~~~~ 70 (528)
++++.+.+.+++.|+.+..+|++.|++..+ |. -..+..+++.+.-. .+..|+.+.|++++
T Consensus 179 el~~~L~~ia~~Egi~i~~eAL~lIa~~s~---Gs-lR~alslLdqli~y---~~~~It~e~V~~ll 238 (491)
T PRK14964 179 KLVEHLVDIAKKENIEHDEESLKLIAENSS---GS-MRNALFLLEQAAIY---SNNKISEKSVRDLL 238 (491)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHcC---CC-HHHHHHHHHHHHHh---cCCCCCHHHHHHHH
Confidence 567788888899999999999999988643 22 12222333332221 12256777776654
No 212
>TIGR00457 asnS asparaginyl-tRNA synthetase. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, asnS, represents asparaginyl-tRNA synthetases from the three domains of life. Some species lack this enzyme and charge tRNA(asn) by misacylation with Asp, followed by transamidation of Asp to Asn.
Probab=21.22 E-value=1.7e+02 Score=32.15 Aligned_cols=53 Identities=15% Similarity=0.184 Sum_probs=39.0
Q ss_pred Cc-EEEEEEEEEcCC-Cc---EEEEeCC--cEEEEEecccccc-----ceeeccCeEEEEEEEEe
Q 009713 178 GR-RWVMGVISQLED-GH---FYLEDLA--ASVEIDLSKAKIT-----TGFFTENTIVVAEGEML 230 (528)
Q Consensus 178 g~-~~vlGml~~~~~-g~---~~LED~s--g~V~Ldls~~~~~-----~g~f~~G~vV~veG~~~ 230 (528)
|+ +.|.|-|...+. |+ +.|.|.+ |.|++.+++.... ...+..|++|.|+|+..
T Consensus 16 g~~v~v~Gwv~~~R~~~~~~F~~lrD~~~~g~iQ~v~~~~~~~~~~~~~~~l~~gs~V~v~G~v~ 80 (453)
T TIGR00457 16 GDEVTVSGWVRTKRSSKKIIFLELNDGSSLGPIQAVINGEDNPYLFQLLKSLTTGSSVSVTGKVV 80 (453)
T ss_pred CCEEEEEEEeEEEEcCCCeEEEEEECCCCCccEEEEEeCCcChHHHHHHHcCCCCcEEEEEEEEE
Confidence 44 589999987654 43 5788999 9999988754211 13468999999999974
No 213
>cd07410 MPP_CpdB_N Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain. CpdB is a bacterial periplasmic protein with an N-terminal metallophosphatase domain and a C-terminal 3'-nucleotidase domain. This alignment model represents the N-terminal metallophosphatase domain, which has 2',3'-cyclic phosphodiesterase activity, hydrolyzing the 2',3'-cyclic phosphates of adenosine, guanosine, cytosine and uridine to yield nucleoside and phosphate. CpdB also hydrolyzes the chromogenic substrates p-nitrophenyl phosphate (PNPP), bis(PNPP) and p-nitrophenyl phosphorylcholine (NPPC). CpdB is thought to play a scavenging role during RNA hydrolysis by converting the non-transportable nucleotides produced by RNaseI to nucleosides which can easily enter a cell for use as a carbon source. This family also includes YfkN, a Bacillus subtilis nucleotide phosphoesterase with two copies of each of the metallophosphatase and 3'-nucleotidase domains. The N-terminal metallophos
Probab=21.19 E-value=1.7e+02 Score=29.36 Aligned_cols=28 Identities=7% Similarity=0.252 Sum_probs=17.0
Q ss_pred HHHHHHHHhcccCCCCCCeEEEE-EccCCCC
Q 009713 300 MGKLEVVLDGFESVEVVPSLFVF-MGNFCSH 329 (528)
Q Consensus 300 le~L~~ll~~~~~~~~~P~~~Vl-~G~F~s~ 329 (528)
+..|..+++.+... .|..+++ .||++++
T Consensus 29 ~~~l~~~i~~~r~~--~~~~l~ld~GD~~~g 57 (277)
T cd07410 29 LARVATLIKKARAE--NPNTLLIDNGDTIQG 57 (277)
T ss_pred HHHHHHHHHHHHhc--CCCeEEEeCCccCCc
Confidence 34555666655442 4666665 8888875
No 214
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=21.05 E-value=3.9e+02 Score=26.15 Aligned_cols=67 Identities=24% Similarity=0.318 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHhcC----CccCHHHHHHHHHhhccCCCChHHHHHHHHHHHhccc-CCCcceeeHHHHHHHHHHHH
Q 009713 4 QTRKKIQKKMKIRG----YGLRMDALDEILSFVNRFPDAEDEAIDLLLDQFEHES-SLKSSIIDKESVNRVTSVLL 74 (528)
Q Consensus 4 ~~r~~i~~~fk~~g----l~l~~~al~~l~~~~~~~~~~~~~~~~~~~~~i~k~~-~~~~~~vd~~~l~~~~~~~~ 74 (528)
++++-+...++..| ..+.+++++.|.+..+-.. ..++.+.+.+.... +.....|+.+.|+.++++++
T Consensus 196 e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p----~~i~~l~~~~~~~a~~~~~~~i~~~~v~~~~~~~~ 267 (269)
T TIGR03015 196 ETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIP----RLINILCDRLLLSAFLEEKREIGGEEVREVIAEID 267 (269)
T ss_pred HHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcc----cHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhh
Confidence 44455555555555 4789999999988653322 33555555543311 13446799999999999874
No 215
>PRK12445 lysyl-tRNA synthetase; Reviewed
Probab=20.71 E-value=2.5e+02 Score=31.25 Aligned_cols=61 Identities=15% Similarity=0.245 Sum_probs=41.8
Q ss_pred EEEEEEEEEcC-CCc---EEEEeCCcEEEEEecccccc-------ceeeccCeEEEEEEEEee--CCe--EEEEEe
Q 009713 180 RWVMGVISQLE-DGH---FYLEDLAASVEIDLSKAKIT-------TGFFTENTIVVAEGEMLV--DGI--FQVITC 240 (528)
Q Consensus 180 ~~vlGml~~~~-~g~---~~LED~sg~V~Ldls~~~~~-------~g~f~~G~vV~veG~~~~--~g~--F~V~~i 240 (528)
+.|-|.|...+ .|+ +.|.|.+|+|++.+++...+ ...+..|++|.|+|.... .|. ..|+++
T Consensus 68 v~v~Grv~~~R~~Gk~~F~~lrD~~g~iQ~~~~~~~~~~~~~~~~~~~l~~Gd~V~v~G~~~~t~~gelel~~~~~ 143 (505)
T PRK12445 68 VSVAGRMMTRRIMGKASFVTLQDVGGRIQLYVARDSLPEGVYNDQFKKWDLGDIIGARGTLFKTQTGELSIHCTEL 143 (505)
T ss_pred EEEEEEEEEEecCCCcEEEEEEeCCccEEEEEECCccchhhHHHHHhcCCCCCEEEEEEEEEecCCCcEEEEEeEE
Confidence 57999998765 354 47999999999988743211 123568999999998853 232 445555
No 216
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=20.65 E-value=2.1e+02 Score=32.76 Aligned_cols=30 Identities=20% Similarity=0.264 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHhcCCccCHHHHHHHHHhhc
Q 009713 4 QTRKKIQKKMKIRGYGLRMDALDEILSFVN 33 (528)
Q Consensus 4 ~~r~~i~~~fk~~gl~l~~~al~~l~~~~~ 33 (528)
++++.+.+.+++.|+.+.++|+++|++..+
T Consensus 190 ei~~~L~~i~~~egi~I~~eal~~La~~s~ 219 (620)
T PRK14954 190 EIQSQLQMICRAEGIQIDADALQLIARKAQ 219 (620)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHhC
Confidence 567888899999999999999999998754
No 217
>KOG0372 consensus Serine/threonine specific protein phosphatase involved in glycogen accumulation, PP2A-related [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=20.32 E-value=3.8e+02 Score=27.15 Aligned_cols=72 Identities=18% Similarity=0.263 Sum_probs=42.9
Q ss_pred CCeEEEEeCCccCcHhHHHHHHHHHhcccCCCCCCeEEEEEccCCCCCCCCCCcchhHHHHHHHHHHHHHHcCCCCCCce
Q 009713 283 NDMFVILSDIWLDNEEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHS 362 (528)
Q Consensus 283 ~~~~v~lSdv~ld~~~~le~L~~ll~~~~~~~~~P~~~Vl~G~F~s~~~~~~~~~~~~~~~~f~~la~~l~~~p~l~~~~ 362 (528)
+.-+.+.+|+| ++ +..|-++|.--.+ .+-.-.+++|||+|.-.. +.+ .|--|.-+=..||+
T Consensus 42 ~tPvtvcGDIH-GQ---f~Dllelf~igG~--~~~t~YLFLGDyVDRG~~----SvE----t~lLLl~lK~rYP~----- 102 (303)
T KOG0372|consen 42 DTPVTVCGDIH-GQ---FYDLLELFRIGGD--VPETNYLFLGDYVDRGYY----SVE----TFLLLLALKVRYPD----- 102 (303)
T ss_pred CCCcEEeeccc-ch---HHHHHHHHHhCCC--CCCCceEeecchhccccc----hHH----HHHHHHHHhhcCcc-----
Confidence 45677889987 21 2334455552222 233678999999997432 222 23233333345775
Q ss_pred eEEEecCCCCC
Q 009713 363 RFLFIPGPDDA 373 (528)
Q Consensus 363 ~~v~VPG~~Dp 373 (528)
++-++-|||.-
T Consensus 103 ritLiRGNHEs 113 (303)
T KOG0372|consen 103 RITLIRGNHES 113 (303)
T ss_pred eeEEeeccchh
Confidence 88899999986
No 218
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=20.19 E-value=2.4e+02 Score=26.80 Aligned_cols=61 Identities=20% Similarity=0.151 Sum_probs=34.1
Q ss_pred HHHHHHHH-HhcCCccCHHHHHHHHHhhccCCCChHHHHHHHHHHHhcccCCCcceeeHHHHHHHH
Q 009713 6 RKKIQKKM-KIRGYGLRMDALDEILSFVNRFPDAEDEAIDLLLDQFEHESSLKSSIIDKESVNRVT 70 (528)
Q Consensus 6 r~~i~~~f-k~~gl~l~~~al~~l~~~~~~~~~~~~~~~~~~~~~i~k~~~~~~~~vd~~~l~~~~ 70 (528)
+..+++.. ++.|+.+.++++++|++.. .|. ...+..+++.+....-..+..||.+.+++++
T Consensus 164 ~~~~l~~~~~~~~~~~~~~~l~~L~~~~---~gn-~r~L~~~l~~~~~~~~~~~~~i~~~~~~~~~ 225 (226)
T TIGR03420 164 KIAALQSRAARRGLQLPDEVADYLLRHG---SRD-MGSLMALLDALDRASLAAKRKITIPFVKEVL 225 (226)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHhc---cCC-HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHh
Confidence 34444444 6779999999999998742 222 2223334333332110122357888877765
Done!