Query 009713
Match_columns 528
No_of_seqs 196 out of 428
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 11:22:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009713.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009713hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3flo_A DNA polymerase alpha su 100.0 8.7E-46 3E-50 391.9 30.8 352 125-520 8-427 (460)
2 3e0j_A DNA polymerase subunit 100.0 1E-39 3.4E-44 346.9 27.5 363 104-525 37-456 (476)
3 2v6z_M DNA polymerase epsilon 99.4 5.2E-13 1.8E-17 111.9 9.7 72 1-73 25-98 (99)
4 1s3l_A Hypothetical protein MJ 98.8 1.6E-07 5.5E-12 88.6 17.0 160 284-528 26-190 (190)
5 2yvt_A Hypothetical protein AQ 98.6 4.4E-07 1.5E-11 88.5 13.8 48 479-528 212-259 (260)
6 2kkn_A Uncharacterized protein 98.5 1.2E-06 4E-11 81.9 14.0 150 285-525 24-173 (178)
7 1z2w_A Vacuolar protein sortin 98.5 1.6E-06 5.6E-11 81.4 14.8 150 285-525 12-172 (192)
8 1su1_A Hypothetical protein YF 98.5 1.5E-06 5.1E-11 83.0 14.4 161 285-526 27-193 (208)
9 1uf3_A Hypothetical protein TT 98.5 2.6E-06 8.8E-11 80.8 14.6 47 479-527 180-226 (228)
10 2a22_A Vacuolar protein sortin 98.4 2.6E-06 8.9E-11 81.7 14.4 159 285-525 27-196 (215)
11 3ib7_A ICC protein; metallopho 98.4 5.6E-06 1.9E-10 83.2 15.4 208 284-524 26-272 (330)
12 4fbk_A DNA repair and telomere 98.3 1.3E-05 4.3E-10 85.6 15.9 217 284-524 77-359 (472)
13 1nnw_A Hypothetical protein; s 98.2 9.8E-06 3.4E-10 78.8 13.3 48 479-526 167-220 (252)
14 3ck2_A Conserved uncharacteriz 98.2 5.2E-05 1.8E-09 69.9 16.2 143 285-524 8-156 (176)
15 4fbw_A DNA repair protein RAD3 98.1 1.6E-05 5.4E-10 83.9 12.6 218 283-524 13-296 (417)
16 3av0_A DNA double-strand break 98.0 0.00021 7.1E-09 74.4 19.3 82 282-375 19-109 (386)
17 3t1i_A Double-strand break rep 97.9 0.00011 3.6E-09 77.9 15.0 220 284-524 33-315 (431)
18 3rqz_A Metallophosphoesterase; 97.9 2.6E-05 9E-10 75.9 8.9 48 480-527 143-217 (246)
19 2q8u_A Exonuclease, putative; 97.9 0.00013 4.3E-09 74.4 13.8 103 284-408 19-134 (336)
20 3qfm_A SAPH, putative uncharac 97.9 7.6E-05 2.6E-09 74.1 11.5 188 283-526 11-227 (270)
21 3tho_B Exonuclease, putative; 97.8 0.00058 2E-08 71.0 17.9 76 285-373 2-90 (379)
22 1xm7_A Hypothetical protein AQ 97.6 0.00072 2.4E-08 63.2 12.7 157 285-510 3-175 (195)
23 3d03_A Phosphohydrolase; glyce 97.4 0.00032 1.1E-08 68.2 8.9 75 285-374 2-84 (274)
24 1ii7_A MRE11 nuclease; RAD50, 97.0 0.0023 7.8E-08 65.0 9.5 78 285-374 2-88 (333)
25 1g5b_A Serine/threonine protei 96.9 0.00036 1.2E-08 66.6 3.1 40 479-518 178-218 (221)
26 2qjc_A Diadenosine tetraphosph 96.9 0.00035 1.2E-08 68.9 2.3 44 479-523 196-241 (262)
27 2nxf_A Putative dimetal phosph 96.9 0.0006 2.1E-08 67.5 4.1 81 283-374 5-100 (322)
28 2xmo_A LMO2642 protein; phosph 96.5 0.0057 2E-07 64.2 9.1 79 283-375 39-139 (443)
29 3rl5_A Metallophosphoesterase 94.7 0.064 2.2E-06 53.8 7.7 65 284-375 60-124 (296)
30 1ute_A Protein (II purple acid 94.6 0.049 1.7E-06 53.3 6.7 81 283-374 6-95 (313)
31 1sr3_A APO-CCME; OB fold, beta 94.4 0.11 3.8E-06 45.8 7.7 62 178-241 28-98 (136)
32 1j6q_A Cytochrome C maturation 94.0 0.25 8.5E-06 43.7 9.1 62 178-241 32-103 (136)
33 2kct_A Cytochrome C-type bioge 93.8 0.14 4.7E-06 42.4 6.7 60 180-241 11-82 (94)
34 2ie4_C PP2A-alpha;, serine/thr 92.8 0.21 7.1E-06 50.3 7.6 73 283-374 49-121 (309)
35 2dfj_A Diadenosinetetraphospha 92.4 0.12 4.2E-06 51.1 5.2 67 285-373 2-68 (280)
36 1fjm_A Protein serine/threonin 90.5 0.45 1.5E-05 48.3 7.1 73 283-374 56-128 (330)
37 1wao_1 Serine/threonine protei 90.3 0.55 1.9E-05 49.6 8.0 71 285-373 214-284 (477)
38 3tgh_A Glideosome-associated p 90.1 0.12 4E-06 52.8 2.5 81 284-375 4-87 (342)
39 2z72_A Protein-tyrosine-phosph 88.4 1 3.6E-05 45.6 8.1 75 283-374 70-153 (342)
40 1xzw_A Purple acid phosphatase 88.1 0.34 1.2E-05 50.4 4.3 80 283-375 126-205 (426)
41 2k50_A Replication factor A re 87.6 2.7 9.2E-05 35.3 9.0 63 165-229 5-83 (115)
42 2qfp_A Purple acid phosphatase 87.6 0.31 1E-05 50.7 3.6 79 283-374 119-197 (424)
43 4gop_B Putative uncharacterize 86.1 2.7 9.3E-05 36.6 8.4 60 179-238 38-107 (136)
44 3e7a_A PP-1A, serine/threonine 85.3 1.8 6.2E-05 43.2 7.6 73 283-374 55-127 (299)
45 3icf_A PPT, serine/threonine-p 85.3 1.8 6.2E-05 43.9 7.7 71 285-373 65-135 (335)
46 3h63_A Serine/threonine-protei 84.2 2.7 9.2E-05 42.3 8.3 73 284-374 60-132 (315)
47 3kdf_D Replication protein A 3 84.0 2.9 9.8E-05 36.3 7.5 59 179-237 33-101 (132)
48 1aui_A Calcineurin, serine/thr 82.9 2 7E-05 46.0 7.1 73 283-374 82-154 (521)
49 1nnx_A Protein YGIW; structura 82.5 3.7 0.00013 34.7 7.2 66 166-231 24-92 (109)
50 3mxn_B RECQ-mediated genome in 82.1 7.3 0.00025 34.5 9.1 52 180-231 61-113 (150)
51 2k75_A Uncharacterized protein 81.9 7.3 0.00025 32.4 8.9 66 167-237 3-82 (106)
52 3ll8_A Serine/threonine-protei 80.8 3.4 0.00012 42.2 7.7 73 283-374 69-141 (357)
53 3dm3_A Replication factor A; p 78.8 14 0.0005 30.6 9.7 64 166-231 4-81 (105)
54 1o7i_A SSB, SSO2364, single st 78.1 14 0.00049 31.1 9.7 60 168-229 3-76 (119)
55 2kbn_A Conserved protein; nucl 75.3 14 0.00048 30.8 8.7 71 167-238 5-84 (109)
56 3e0e_A Replication protein A; 72.0 16 0.00053 29.8 8.0 59 168-229 3-76 (97)
57 2pi2_A Replication protein A 3 71.9 9.9 0.00034 37.1 8.0 59 180-238 74-142 (270)
58 2z1a_A 5'-nucleotidase; metal- 64.0 12 0.00042 40.1 7.4 77 283-374 29-119 (552)
59 3rl5_A Metallophosphoesterase 56.4 7 0.00024 38.8 3.5 32 478-509 245-277 (296)
60 3b0b_C CENP-X, centromere prot 56.2 23 0.0008 28.1 5.9 61 7-73 16-76 (81)
61 1ynx_A Replication factor-A pr 55.0 16 0.00056 30.5 5.2 63 166-228 3-80 (114)
62 1wjj_A Hypothetical protein F2 48.5 63 0.0021 28.5 8.0 35 194-230 66-100 (145)
63 2hpi_A DNA polymerase III alph 48.0 27 0.00091 41.3 7.0 65 176-240 1040-1118(1220)
64 1jr3_D DNA polymerase III, del 45.6 49 0.0017 32.5 7.8 63 4-72 146-208 (343)
65 4dra_E Centromere protein X; D 44.8 28 0.00096 27.9 4.6 54 14-73 27-80 (84)
66 3m4p_A Ehasnrs, asparaginyl-tR 41.6 59 0.002 34.1 8.0 64 167-230 19-92 (456)
67 3bos_A Putative DNA replicatio 40.6 38 0.0013 30.6 5.8 64 4-71 177-241 (242)
68 1n9w_A Aspartyl-tRNA synthetas 38.0 67 0.0023 33.3 7.6 48 179-231 15-67 (422)
69 2chg_A Replication factor C sm 36.3 75 0.0026 27.9 6.9 60 4-71 165-224 (226)
70 2dgy_A MGC11102 protein; EIF-1 31.5 1.1E+02 0.0039 25.5 6.6 47 181-227 16-64 (111)
71 3aji_B S6C, proteasome (prosom 31.1 63 0.0021 24.9 4.7 70 1-74 1-72 (83)
72 1u9p_A PARC; unknown function; 30.9 42 0.0014 28.6 3.8 70 1-74 25-102 (120)
73 2yfw_B Histone H4, H4; cell cy 30.6 1.4E+02 0.0046 24.5 6.9 60 7-73 33-94 (103)
74 2yv5_A YJEQ protein; hydrolase 29.7 3.2E+02 0.011 26.3 10.8 58 181-240 6-65 (302)
75 3d03_A Phosphohydrolase; glyce 29.6 67 0.0023 29.8 5.6 30 478-507 186-216 (274)
76 3nem_A Aspartyl-tRNA synthetas 28.9 1.2E+02 0.004 31.6 7.7 54 178-231 16-80 (438)
77 3i4o_A Translation initiation 27.8 1E+02 0.0034 24.3 5.3 48 181-228 15-65 (79)
78 1jmc_A Protein (replication pr 27.7 1E+02 0.0036 28.8 6.6 66 164-229 123-206 (246)
79 1tzy_D Histone H4-VI; histone- 27.0 1.4E+02 0.0048 24.4 6.4 60 7-73 33-94 (103)
80 3kf6_A Protein STN1; OB fold, 27.0 87 0.003 27.9 5.4 63 179-241 49-124 (159)
81 2chq_A Replication factor C sm 26.3 93 0.0032 29.5 6.1 28 4-31 165-192 (319)
82 3zth_A STU0660; DNA binding, c 26.2 2.2E+02 0.0075 28.4 8.5 73 290-373 171-243 (350)
83 2pi2_E Replication protein A 1 25.9 3.3E+02 0.011 23.7 9.9 59 178-240 43-105 (142)
84 3au7_A TIAS, putative uncharac 25.7 2.7E+02 0.0091 28.6 9.5 61 179-240 286-356 (402)
85 1e1o_A Lysyl-tRNA synthetase, 25.6 1.2E+02 0.0042 32.1 7.2 62 179-240 66-142 (504)
86 2yeq_A Apased, PHOD, alkaline 25.3 1.5E+02 0.0051 31.5 7.9 83 283-375 116-215 (527)
87 3bju_A Lysyl-tRNA synthetase; 25.0 1.1E+02 0.0036 32.7 6.6 62 179-240 57-135 (521)
88 2xgt_A Asparaginyl-tRNA synthe 24.9 1.3E+02 0.0045 31.1 7.2 53 179-231 13-73 (435)
89 2nxf_A Putative dimetal phosph 23.5 1E+02 0.0035 29.1 5.8 46 480-525 258-308 (322)
90 1d7q_A Translation initiation 21.4 2.2E+02 0.0074 25.0 6.7 47 181-227 32-80 (143)
91 1ii7_A MRE11 nuclease; RAD50, 21.1 1.7E+02 0.0056 28.6 6.8 29 480-508 199-227 (333)
92 4gop_A Putative uncharacterize 20.5 3.7E+02 0.013 22.3 8.1 59 178-240 18-79 (114)
93 1u0l_A Probable GTPase ENGC; p 20.3 5.6E+02 0.019 24.4 10.5 57 182-240 11-70 (301)
No 1
>3flo_A DNA polymerase alpha subunit B; protein-protein complex, phosphoesterase fold, OB fold, zinc motif, DNA replication, nucleus; HET: DNA; 2.50A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.7e-46 Score=391.91 Aligned_cols=352 Identities=16% Similarity=0.230 Sum_probs=255.3
Q ss_pred ChhHHHHHHHHHHHHHHHHHhccCCCCCCccccccCCCCccceeecccccCCCCcEEEEEEEEEcC---CCc-----EEE
Q 009713 125 EASAKAALYRDRFLLLFQRVSRDQHFSRPSFDVVNSEFGSCEISTIQSLVGQTGRRWVMGVISQLE---DGH-----FYL 196 (528)
Q Consensus 125 ~~~~k~~~f~~Ry~~l~~rl~R~~~F~~~~~~~~~~~~~~~~it~I~~Llg~~g~~~vlGml~~~~---~g~-----~~L 196 (528)
.-.++++++.+|-....+.+..+-......| .+. ..-++..++++|+|+++. +|+ +.|
T Consensus 8 kl~e~~~vLd~~I~~~~~~~~~~~~~~~~~f------------~~p--~~~sq~~v~~vGRI~~Ds~~~egkLn~~Sl~L 73 (460)
T 3flo_A 8 NLQEASDVLDDQIESFTKIIQNHYKLSPNDF------------ADP--TIQSQSEIYAVGRIVPDSPTYDKFLNPESLSL 73 (460)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTCCGGGB------------CCT--TSCCSSCEEEEEEEEESSSSCCSCCCTTSEEE
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCCCcccc------------CCc--ccCccccEEEEEEEeeCCCCCCCCcchhheEE
Confidence 3556777777777777776665421110001 111 122556789999999886 776 489
Q ss_pred EeC-----CcEEEEEeccccccceeeccCeEEEEEEEEeeCCeEEEEEecCCCCCCchhhhhhhcCcccCCCCCCchhhh
Q 009713 197 EDL-----AASVEIDLSKAKITTGFFTENTIVVAEGEMLVDGIFQVITCGFPPLEDRDQSLKLLAGYDFFGGGTLKKEDT 271 (528)
Q Consensus 197 ED~-----sg~V~Ldls~~~~~~g~f~~G~vV~veG~~~~~g~F~V~~i~~Pp~e~r~~s~~~~~~~d~fG~~~~~~~~~ 271 (528)
|-. ..+|+||+++.. +.++ +|||||+++|+++.|+.|.|++|.-+|.-+...+ +..+
T Consensus 74 E~sr~~g~G~rV~Ldls~l~-~~sl-FPGQIVav~G~N~~G~~f~v~ei~~~P~~~~p~s---------------~~~~- 135 (460)
T 3flo_A 74 ETSRMGGVGRRVRLDLSQVN-ELSF-FLGQIVAFKGKNANGDYFTVNSILPLPYPNSPVS---------------TSQE- 135 (460)
T ss_dssp ECCHHHHTTCEEEEECTTCC-CEEE-CTTCEEEEEEECSSSSCEEEEEECCCCCCCCCEE---------------EHHH-
T ss_pred EeccccCCCeEEEeecccCC-ceee-cCCCEEEEEEEcCCCCEEEEeeeccCCCCCCCCC---------------CHHH-
Confidence 954 349999999864 3455 5999999999998888999999975554322111 1111
Q ss_pred HHHHHH-HHh-ccCCeEEEEeCCccCcHh-HHHHHHHHHhcccCCCCCCeEEEEEccCCCCCCC--CCC---------cc
Q 009713 272 LRLADL-EKR-AANDMFVILSDIWLDNEE-VMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCN--LSF---------HS 337 (528)
Q Consensus 272 ~~l~~~-e~~-~~~~~~v~lSdv~ld~~~-~le~L~~ll~~~~~~~~~P~~~Vl~G~F~s~~~~--~~~---------~~ 337 (528)
+... ++. ....+++++|++|+.+.+ .+++|.+|++++.+. .+|+++||||||+|..+. ..+ ..
T Consensus 136 --l~~~~~~~~~~~l~ivvAsGPyT~sdnl~yepL~~Ll~~v~~~-~kPdvLIL~GPFvD~~hp~i~~G~~p~~~~~~~~ 212 (460)
T 3flo_A 136 --LQEFQANLEGSSLKVIVTCGPYFANDNFSLELLQEFIDSINNE-VKPHVLIMFGPFIDITHPLIASGKLPNFPQFKTQ 212 (460)
T ss_dssp --HHHHHHHHTSSCEEEEEEESCCSCSSCCCCHHHHHHHHHCCCC-CCCSEEEEESCSSBTTCHHHHHTCCCCCTTCSSC
T ss_pred --hhhhhhhccCCCcEEEEEeCCccCCCccChHHHHHHHHHHHhc-cCCCEEEEecCcccccCcccccCccccccccccc
Confidence 1111 111 245689999999988764 479999999987662 379999999999987421 111 11
Q ss_pred hhHHHHHHHHH-HHHHHcCCCCCCceeEEEecCCCCCCC-CCCCCCCCCchhhHHHHhhhCC-ceEEecCCeEEEEccEE
Q 009713 338 FSSLRLQFGKL-GQMIAAHPRLKEHSRFLFIPGPDDAGP-STVLPRCALPKYLTEELQKYIP-NAIFSSNPCRIKFYTQE 414 (528)
Q Consensus 338 ~~~~~~~f~~l-a~~l~~~p~l~~~~~~v~VPG~~Dp~~-~~~lPqpplp~~~~~~l~~~~~-n~~~~sNPcri~~~~~e 414 (528)
..+|.+.|+++ +.+|.+ +..+++||||||++|+++ ..+||||||++... ...+ |++|+||||+|++++++
T Consensus 213 ~~t~~~lF~~~i~~il~~---l~~~t~VVlVPS~rD~~~~~~v~PQPpf~~k~l----~l~k~nv~~~sNPc~~~in~v~ 285 (460)
T 3flo_A 213 PKTLDELFLKLFTPILKT---ISPHIQTVLIPSTKDAISNHAAYPQASLIRKAL----QLPKRNFKCMANPSSFQINEIY 285 (460)
T ss_dssp CSSHHHHHHHHTHHHHTT---SCTTSEEEEECCTTBTTCSCCSBSBCCCCTTTT----TCCTTTEEECCBSEEEEETTEE
T ss_pred ccCHHHHHHHHHHHHHHh---ccCCCEEEEeCCcccccCCCCCcCCCCCChhhh----cCCcccEEEeCCCEEEEECCEE
Confidence 46889999975 677764 567899999999999984 58999999997532 2234 99999999999999999
Q ss_pred EEEEehHHHHHHhhcccCCCCCCCCCChHHHHHHHHhcCCCCCCCCCCCccccC--------------------CCCC--
Q 009713 415 IVFFRQDLLYRMRRSCLIPPSREETDDPFEHLVATITHQSHLCPLPLTVQPIIW--------------------NYDH-- 472 (528)
Q Consensus 415 Ivi~rdDl~~~l~r~~i~~p~~~~~~d~~~~l~ktiL~Q~hL~Pl~~~~~pi~w--------------------~~d~-- 472 (528)
|++++.|++.+|+ +....+. ....|++.++++|||+||||||++|...++.| +|++
T Consensus 286 igvss~Dil~~L~-e~~~~~~-~~~~dr~~Rl~~hlL~Qr~~yPL~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (460)
T 3flo_A 286 FGCSNVDTFKDLK-EVIKGGT-TSSRYRLDRVSEHILQQRRYYPIFPGSIRTRIKPKDVSTKKETNDMESKEEKVYEHIS 363 (460)
T ss_dssp EEECCSCHHHHCC-CEEECHH-HHHSCHHHHHHHHHHHHTBSCCCSSCCEEC-------------------------CCE
T ss_pred EEEEcHHHHHHHH-HhhcCCC-CccccHHHHHHHHHhhcCcccCcCCCcccccccccccccccccccccccccccccccC
Confidence 9999999999996 3332211 12348999999999999999999999988887 2221
Q ss_pred --cc--------cc--cCCCcEEEecCCCCcceEEeCCeEEEcCCCCCC---C-cEEEEEECCC
Q 009713 473 --SL--------HL--YPTPHAIVLADKSEQKAFKYTGITCFNPGSFSS---D-STFVAYRPCT 520 (528)
Q Consensus 473 --~L--------~L--~p~Pdvlil~d~~~~f~~~y~gc~~vNpGsf~~---~-~sf~~y~p~~ 520 (528)
.| .+ +.+||+||+++...+|+..++||+|||||+|.. + |||+...-..
T Consensus 364 g~~Ldv~yl~l~e~~~~~~PDilI~PS~l~~F~kvv~~~v~INPG~l~k~~~g~GTya~l~i~~ 427 (460)
T 3flo_A 364 GADLDVSYLGLTEFVGGFSPDIMIIPSELQHFARVVQNVVVINPGRFIRATGNRGSYAQITVQC 427 (460)
T ss_dssp ECCBCGGGGGGGBCGGGCCCSEEECCCSSCCEEEEETTEEEEECCCSBCTTSCBCEEEEEEECC
T ss_pred CcccceeccchhhcccCCCCCEEEcCCCCcCceEEeCCEEEECcccccCCCCCCceeEEEEEeC
Confidence 12 22 789999999999999999999999999999953 3 9998665443
No 2
>3e0j_A DNA polymerase subunit delta-2; DNA polymerase delta, P66 subunit, P50 subunit, human, DNA replication, DNA-directed DNA polymerase; HET: DNA; 3.00A {Homo sapiens}
Probab=100.00 E-value=1e-39 Score=346.94 Aligned_cols=363 Identities=14% Similarity=0.117 Sum_probs=260.9
Q ss_pred eeeecccceeeccCCCCCccCChhHHHHHHHHHHHHHHHHHhccCCCCCCccccccCCCCccceeecccccC-CCCc-EE
Q 009713 104 FRYDSIKKHFYQHAGSLPIHGEASAKAALYRDRFLLLFQRVSRDQHFSRPSFDVVNSEFGSCEISTIQSLVG-QTGR-RW 181 (528)
Q Consensus 104 ~~y~~~~k~f~~~~~~~~l~~~~~~k~~~f~~Ry~~l~~rl~R~~~F~~~~~~~~~~~~~~~~it~I~~Llg-~~g~-~~ 181 (528)
..|+.....|... ..+. .+.+.++|+.|+..+|.++.++.. ..+. ...+|..++. +.|+ .+
T Consensus 37 ~~y~~~~~~F~l~--~~~y---~~QY~~iY~~RL~~Lr~~l~~~a~------~kw~------~~~~i~klldl~~ge~c~ 99 (476)
T 3e0j_A 37 ATYTNSSQPFRLG--ERSF---SRQYAHIYATRLIQMRPFLENRAQ------QHWG------SGVGVKKLCELQPEEKCC 99 (476)
T ss_dssp TCEEECCGGGCC-----------------CHHHHHHHHHHHHHHHH------HHSC------SCCCBCCSSSCCTTCCEE
T ss_pred ccccccccccccC--CCCh---hHHHHHHHHHHHHHHHHHHHHHHH------HhcC------CCccchHhhcccCCCEEE
Confidence 6677666667432 1121 356778999999999999976541 0000 0234444443 2344 59
Q ss_pred EEEEEEEc----------------------------CCCcEEEEeCCcEEEEEeccccccceeeccCeEEEEEEEEeeCC
Q 009713 182 VMGVISQL----------------------------EDGHFYLEDLAASVEIDLSKAKITTGFFTENTIVVAEGEMLVDG 233 (528)
Q Consensus 182 vlGml~~~----------------------------~~g~~~LED~sg~V~Ldls~~~~~~g~f~~G~vV~veG~~~~~g 233 (528)
|+|+|.+. +++.++|||++|||+|... .....+++|+||+|.|....+|
T Consensus 100 viGTvyk~m~lKPsIL~eis~e~~~~~~~~~~~y~~~~D~l~LEDesGRv~L~g~---~~~~~lVTG~VvaV~G~~~~~G 176 (476)
T 3e0j_A 100 VVGTLFKAMPLQPSILREVSEEHNLLPQPPRSKYIHPDDELVLEDELQRIKLKGT---IDVSKLVTGTVLAVFGSVRDDG 176 (476)
T ss_dssp EEEEEEEEC----------------------CCCCCSSCEEEEECSSCEEEEEES---CCTTTCCTTCEEEEEEEECTTS
T ss_pred EEEEEEecccCCCcHHHHHhhhhccCCCCccccccCCCceEEEECCCCEEEEEEE---cccccccCCcEEEEEEEEcCCC
Confidence 99999742 2357899999999999872 2245678999999999998899
Q ss_pred eEEEEEecCCCCCCchhhhhhhcCcccCCCCCCchhhhHHHHHHHHhccCCeEEEEeCCccCcHhH--H---HHHHHHHh
Q 009713 234 IFQVITCGFPPLEDRDQSLKLLAGYDFFGGGTLKKEDTLRLADLEKRAANDMFVILSDIWLDNEEV--M---GKLEVVLD 308 (528)
Q Consensus 234 ~F~V~~i~~Pp~e~r~~s~~~~~~~d~fG~~~~~~~~~~~l~~~e~~~~~~~~v~lSdv~ld~~~~--l---e~L~~ll~ 308 (528)
.|.|.+|++|...++.. +. ....+.+++|+||+|+++... . +.|.++|.
T Consensus 177 ~F~V~di~~Pd~ppq~~-~~-------------------------~~~~~~~ialVSGL~igs~~~~~~~~~~ll~d~L~ 230 (476)
T 3e0j_A 177 KFLVEDYCFADLAPQKP-AP-------------------------PLDTDRFVLLVSGLGLGGGGGESLLGTQLLVDVVT 230 (476)
T ss_dssp SEEEEEEEECBCCCCCC-CC-------------------------CCSSCCEEEEECCCCBTSSCHHHHHHHHHHHHHHH
T ss_pred eEEEEEEEcCCCCCCCC-CC-------------------------cCCCCCEEEEECCcccCCCcccchHHHHHHHHHHc
Confidence 99999999997765421 00 011456899999999999742 2 44455555
Q ss_pred cccCC------CCCCeEEEEEccCCCCCCCCCC----cc------hhHHHHHHHHHHHHHHcCCCCCCceeEEEecCCCC
Q 009713 309 GFESV------EVVPSLFVFMGNFCSHPCNLSF----HS------FSSLRLQFGKLGQMIAAHPRLKEHSRFLFIPGPDD 372 (528)
Q Consensus 309 ~~~~~------~~~P~~~Vl~G~F~s~~~~~~~----~~------~~~~~~~f~~la~~l~~~p~l~~~~~~v~VPG~~D 372 (528)
|.... .....++|++||.+++...... .. .....+.+++|+++|++ |.++++|+++||+||
T Consensus 231 G~~g~~~~~~~as~I~rlIIAGn~v~~~~~~~e~~~~~~y~~~~~~~~~~~~~~~ld~~L~~---l~~~i~V~lmPG~~D 307 (476)
T 3e0j_A 231 GQLGDEGEQCSAAHVSRVILAGNLLSHSTQSRDSINKAKYLTKKTQAASVEAVKMLDEILLQ---LSASVPVDVMPGEFD 307 (476)
T ss_dssp TCSSCHHHHHHHTTEEEEEEESCSBCC-------------CHHHHHHHHHHHHHHHHHHHHH---HHTTSCEEEECCTTS
T ss_pred CCCCCccccchhhceeEEEEECCccccccccchhhhhhhccccccchhhHHHHHHHHHHHHh---cccCceEEecCCCCC
Confidence 54221 1368999999999998532100 00 01223678899999985 567899999999999
Q ss_pred CCCCCCCCCCCCchhhHHHHhhhCCceEEecCCeEEEEccEEEEEEehHHHHHHhhcccCCCCCCCCCChHHHHHHHHhc
Q 009713 373 AGPSTVLPRCALPKYLTEELQKYIPNAIFSSNPCRIKFYTQEIVFFRQDLLYRMRRSCLIPPSREETDDPFEHLVATITH 452 (528)
Q Consensus 373 p~~~~~lPqpplp~~~~~~l~~~~~n~~~~sNPcri~~~~~eIvi~rdDl~~~l~r~~i~~p~~~~~~d~~~~l~ktiL~ 452 (528)
|+ +.++||||||+++++..+ .+.+++++|||+.++++|+.+++++...+++|.|..- . +..-.+|+.+|+
T Consensus 308 P~-~~~lPQqplh~~lfp~s~-~~~~~~~vtNP~~~~i~G~~~LgtsGqnidDi~ky~~---~-----~~~l~~me~~Lk 377 (476)
T 3e0j_A 308 PT-NYTLPQQPLHPCMFPLAT-AYSTLQLVTNPYQATIDGVRFLGTSGQNVSDIFRYSS---M-----EDHLEILEWTLR 377 (476)
T ss_dssp SS-CSSSSCCCCCTTSCHHHH-TSTTEEECCSSEEEEETTEEEEECSSHHHHHHHHHSC---C-----CCHHHHHHHHHH
T ss_pred cc-cccCCCCCcCHHHhhhhh-hcCccEEeCCCeEEEECCEEEEEECCCCHHHHHhcCC---C-----CCHHHHHHHHHH
Confidence 99 599999999999998874 5789999999999999999999999999999988752 1 335679999999
Q ss_pred CCCCCCCCCCCccccCC-CCCcccccCCCcEEEecCCCCcceEEe-----CCeEEEcCCCCCCCcEEEEEECCCCeEEe
Q 009713 453 QSHLCPLPLTVQPIIWN-YDHSLHLYPTPHAIVLADKSEQKAFKY-----TGITCFNPGSFSSDSTFVAYRPCTQEVEF 525 (528)
Q Consensus 453 Q~hL~Pl~~~~~pi~w~-~d~~L~L~p~Pdvlil~d~~~~f~~~y-----~gc~~vNpGsf~~~~sf~~y~p~~~~~e~ 525 (528)
||||||++|++.|+++- -.+.+.|...||++++|+.+.--+..+ ..|++|...+|..+++.+..|..|.+|+.
T Consensus 378 wrHlAPTaPdTl~~yP~~~~DpfVi~~~PhVyf~Gnq~~f~t~~~~~~~~~~vrLv~VP~Fs~T~~~vLvdl~tLe~~~ 456 (476)
T 3e0j_A 378 VRHISPTAPDTLGCYPFYKTDPFIFPECPHVYFCGNTPSFGSKIIRGPEDQTVLLVTVPDFSATQTACLVNLRSLACQP 456 (476)
T ss_dssp BTCSCTTSCCC------CCSCTTSCSSCCSEEEEEEESSCEEEEEECSSCCEEEEEEEECHHHHCEEEEEETTTTBCCE
T ss_pred HhccCCCCCCceeeccCCCCCceeecCCCcEEEeCCCCccceeEEecCCCCeEEEEEcCCcCCCCeEEEEECccccEEE
Confidence 99999999999999995 567899999999999999875444333 24899999999999999999999998864
No 3
>2v6z_M DNA polymerase epsilon subunit 2; DNA replication, DPOE2, transferase, AAA protein family; HET: DNA; NMR {Homo sapiens}
Probab=99.42 E-value=5.2e-13 Score=111.93 Aligned_cols=72 Identities=19% Similarity=0.390 Sum_probs=67.4
Q ss_pred CC-hHHHHHHHHHHHhcCCccCHHHHHHHHHhhccCCCCh-HHHHHHHHHHHhcccCCCcceeeHHHHHHHHHHH
Q 009713 1 MS-GQTRKKIQKKMKIRGYGLRMDALDEILSFVNRFPDAE-DEAIDLLLDQFEHESSLKSSIIDKESVNRVTSVL 73 (528)
Q Consensus 1 m~-~~~r~~i~~~fk~~gl~l~~~al~~l~~~~~~~~~~~-~~~~~~~~~~i~k~~~~~~~~vd~~~l~~~~~~~ 73 (528)
|+ .++|+.|+++||++||+|++||+++|++++.+....+ ++|++.|+++|.||. +++++||++.|+.++++|
T Consensus 25 M~~~rlrk~I~k~FKL~Gl~Lr~dA~~~L~~~L~~~~~~e~e~~L~~Iid~lqkq~-LsS~~Vdk~~VE~AVkEc 98 (99)
T 2v6z_M 25 MAPERLRSRALSAFKLRGLLLRGEAIKYLTEALQSISELELEDKLEKIINAVEKQP-LSSNMIERSVVEAAVQES 98 (99)
T ss_dssp CCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHTTTSCTTTHHHHHHHHHHHHTTSC-CSSSEECHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHhhhcceeecHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCc-CccccccHHHHHHHHHHh
Confidence 67 4999999999999999999999999999998887744 699999999999996 999999999999999998
No 4
>1s3l_A Hypothetical protein MJ0936; phosphodiesterase, nuclease, structural genomics, BSGC struc funded by NIH; 2.40A {Methanocaldococcus jannaschii} SCOP: d.159.1.7 PDB: 1s3m_A 1s3n_A 2ahd_A
Probab=98.79 E-value=1.6e-07 Score=88.63 Aligned_cols=160 Identities=14% Similarity=0.132 Sum_probs=106.6
Q ss_pred CeEEEEeCCccCcHhHHHHHHHHHhcccCCCCCCeEEEEEccCCCCCCCCCCcchhHHHHHHHHHHHHHHcCCCCCCcee
Q 009713 284 DMFVILSDIWLDNEEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHSR 363 (528)
Q Consensus 284 ~~~v~lSdv~ld~~~~le~L~~ll~~~~~~~~~P~~~Vl~G~F~s~~~~~~~~~~~~~~~~f~~la~~l~~~p~l~~~~~ 363 (528)
-+++++||+| ++. +.|+++++.+... .|+.+|++||+++. + ..+.|.+ + ...
T Consensus 26 m~i~~iSD~H-g~~---~~l~~~l~~~~~~--~~D~ii~~GDl~~~-------------~----~~~~l~~---l--~~~ 77 (190)
T 1s3l_A 26 MKIGIMSDTH-DHL---PNIRKAIEIFNDE--NVETVIHCGDFVSL-------------F----VIKEFEN---L--NAN 77 (190)
T ss_dssp CEEEEECCCT-TCH---HHHHHHHHHHHHS--CCSEEEECSCCCST-------------H----HHHHGGG---C--SSE
T ss_pred eEEEEEeeCC-CCH---HHHHHHHHHHhhc--CCCEEEECCCCCCH-------------H----HHHHHHh---c--CCC
Confidence 3688999999 443 4455566554432 68999999999751 1 1222332 2 358
Q ss_pred EEEecCCCCCCCCCCCCCCCCchhhHHHHhhh-CCceEEecCCeEEEEccEEEEEEehHHHHHHhhcccCCCCCCCCCCh
Q 009713 364 FLFIPGPDDAGPSTVLPRCALPKYLTEELQKY-IPNAIFSSNPCRIKFYTQEIVFFRQDLLYRMRRSCLIPPSREETDDP 442 (528)
Q Consensus 364 ~v~VPG~~Dp~~~~~lPqpplp~~~~~~l~~~-~~n~~~~sNPcri~~~~~eIvi~rdDl~~~l~r~~i~~p~~~~~~d~ 442 (528)
+++|+||||..... +.+.+... .. .+...|..+...+..|+++|..... +
T Consensus 78 ~~~V~GNhD~~~~~----------~~~~~~~~~~~--~l~~~~~~~~~~~~~ill~Hg~~~~-l---------------- 128 (190)
T 1s3l_A 78 IIATYGNNDGERCK----------LKEWLKDINEE--NIIDDFISVEIDDLKFFITHGHHQS-V---------------- 128 (190)
T ss_dssp EEEECCTTCCCHHH----------HHHHHHHHCTT--CEEESEEEEEETTEEEEEEESCCHH-H----------------
T ss_pred EEEEeCCCcchHHH----------HHHHhcccChh--hhcccceEEeeCCcEEEEECCChHH-H----------------
Confidence 99999999975311 11111110 11 2556778888889999999965321 0
Q ss_pred HHHHHHHHhcCCCCCCCCCCCccccCCCCCcccccCCCcEEEecCCCCcceEEeCCeEEEcCCCCCC----CcEEEEEEC
Q 009713 443 FEHLVATITHQSHLCPLPLTVQPIIWNYDHSLHLYPTPHAIVLADKSEQKAFKYTGITCFNPGSFSS----DSTFVAYRP 518 (528)
Q Consensus 443 ~~~l~ktiL~Q~hL~Pl~~~~~pi~w~~d~~L~L~p~Pdvlil~d~~~~f~~~y~gc~~vNpGsf~~----~~sf~~y~p 518 (528)
.+.+.+ ..-+++++.|+.+.++...++|+.+||||+... ..+|++++.
T Consensus 129 ~~~~~~----------------------------~~~~d~vl~GHtH~~~~~~~~~~~~iNpGs~~~r~~~~~~y~il~~ 180 (190)
T 1s3l_A 129 LEMAIK----------------------------SGLYDVVIYGHTHERVFEEVDDVLVINPGECCGYLTGIPTIGILDT 180 (190)
T ss_dssp HHHHHH----------------------------HSCCSEEEEECSSCCEEEEETTEEEEECCCSSCTTTSCCEEEEEET
T ss_pred HHHHHh----------------------------cCCCCEEEECCCCCcceEEECCEEEEECCcccccCCCCCEEEEEEc
Confidence 000100 013589999999999988899999999999843 369999999
Q ss_pred CCCeEEeccC
Q 009713 519 CTQEVEFSAL 528 (528)
Q Consensus 519 ~~~~~e~~~~ 528 (528)
.++++++-+|
T Consensus 181 ~~~~v~~~~~ 190 (190)
T 1s3l_A 181 EKKEYREIVL 190 (190)
T ss_dssp TTTEEEEEEC
T ss_pred CCCcEEEEeC
Confidence 9999988654
No 5
>2yvt_A Hypothetical protein AQ_1956; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; 1.60A {Aquifex aeolicus} SCOP: d.159.1.6
Probab=98.60 E-value=4.4e-07 Score=88.45 Aligned_cols=48 Identities=10% Similarity=0.275 Sum_probs=41.0
Q ss_pred CCcEEEecCCCCcceEEeCCeEEEcCCCCCCCcEEEEEECCCCeEEeccC
Q 009713 479 TPHAIVLADKSEQKAFKYTGITCFNPGSFSSDSTFVAYRPCTQEVEFSAL 528 (528)
Q Consensus 479 ~Pdvlil~d~~~~f~~~y~gc~~vNpGsf~~~~sf~~y~p~~~~~e~~~~ 528 (528)
-|++++.||.| +....+.++.++|||++.. |+|+.++...+++++..+
T Consensus 212 ~~~~vl~GH~H-~~~~~~~~~~~in~Gs~~~-g~~~ii~~~~~~~~~~~~ 259 (260)
T 2yvt_A 212 NPEVAIVGHVG-KGHELVGNTIVVNPGEFEE-GRYAFLDLTQHKIKLEQF 259 (260)
T ss_dssp CCSEEEECSSC-CEEEEETTEEEEECCBGGG-TEEEEEETTTTEEEEEEC
T ss_pred CCCEEEECCcc-CCcEEeCCEEEEeCCCCCC-CceEEEEEcCCEEEeeec
Confidence 58999999999 6666778999999999965 699999999888887543
No 6
>2kkn_A Uncharacterized protein; protein phosphatase 2A homologue, structural genomics, PSI- 2, protein structure initiative; NMR {Thermotoga maritima}
Probab=98.52 E-value=1.2e-06 Score=81.85 Aligned_cols=150 Identities=17% Similarity=0.189 Sum_probs=94.3
Q ss_pred eEEEEeCCccCcHhHHHHHHHHHhcccCCCCCCeEEEEEccCCCCCCCCCCcchhHHHHHHHHHHHHHHcCCCCCCceeE
Q 009713 285 MFVILSDIWLDNEEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHSRF 364 (528)
Q Consensus 285 ~~v~lSdv~ld~~~~le~L~~ll~~~~~~~~~P~~~Vl~G~F~s~~~~~~~~~~~~~~~~f~~la~~l~~~p~l~~~~~~ 364 (528)
+++++||+|.... .+.|.+++..+.. .|+.+|++||+++. +.++.|.+ . ...+
T Consensus 24 ri~~iSD~Hg~~~--~~~l~~~l~~~~~---~~D~ii~~GD~~~~-------------~~~~~l~~----~-----~~~v 76 (178)
T 2kkn_A 24 RFLLISDSHVPVR--MASLPDEILNSLK---EYDGVIGLGDYVDL-------------DTVILLEK----F-----SKEF 76 (178)
T ss_dssp EEEEECCCCBTTT--TCCCCHHHHHGGG---GCSEEEESSCBSCH-------------HHHHHHHH----H-----TSSE
T ss_pred EEEEEecccCCCC--HHHHHHHHHHHhc---CCCEEEECCCCCCH-------------HHHHHHHh----c-----CCCE
Confidence 4789999995211 1233444443332 58999999999852 22222222 1 1479
Q ss_pred EEecCCCCCCCCCCCCCCCCchhhHHHHhhhCCceEEecCCeEEEEccEEEEEEehHHHHHHhhcccCCCCCCCCCChHH
Q 009713 365 LFIPGPDDAGPSTVLPRCALPKYLTEELQKYIPNAIFSSNPCRIKFYTQEIVFFRQDLLYRMRRSCLIPPSREETDDPFE 444 (528)
Q Consensus 365 v~VPG~~Dp~~~~~lPqpplp~~~~~~l~~~~~n~~~~sNPcri~~~~~eIvi~rdDl~~~l~r~~i~~p~~~~~~d~~~ 444 (528)
++|+||+|... + .+.+|. ...+.+.+.+|++++.+.. | .
T Consensus 77 ~~V~GNhD~~~------------~----~~~lp~------~~~~~~~g~~i~l~HG~~~----------~---------~ 115 (178)
T 2kkn_A 77 YGVHGNMDYPD------------V----KEHLPF------SKVLLVEGVTIGMCHGWGA----------P---------W 115 (178)
T ss_dssp EECCCSSSCGG------------G----GGTSCS------CEEEEETTEEEEECCSCCC----------H---------H
T ss_pred EEEECCCCcHH------------H----HhhCCc------ceEEEECCEEEEEECCCCC----------C---------C
Confidence 99999999642 0 112222 3457788999999986410 1 0
Q ss_pred HHHHHHhcCCCCCCCCCCCccccCCCCCcccccCCCcEEEecCCCCcceEEeCCeEEEcCCCCCCCcEEEEEECCCCeEE
Q 009713 445 HLVATITHQSHLCPLPLTVQPIIWNYDHSLHLYPTPHAIVLADKSEQKAFKYTGITCFNPGSFSSDSTFVAYRPCTQEVE 524 (528)
Q Consensus 445 ~l~ktiL~Q~hL~Pl~~~~~pi~w~~d~~L~L~p~Pdvlil~d~~~~f~~~y~gc~~vNpGsf~~~~sf~~y~p~~~~~e 524 (528)
.+...+. ..+. .-+++++.|+.+.++...++|+.++|||++.. .+|+.++...++++
T Consensus 116 ~~~~~~~--------------------~~~~--~~~d~vi~GHtH~~~~~~~~~~~~iNpGS~~~-~sy~il~~~~~~~~ 172 (178)
T 2kkn_A 116 DLKDRLL--------------------KVFN--EKPQVILFGHTHEPEDTVKAGVRFLNPGSLAE-GSYAVLELDGGEVR 172 (178)
T ss_dssp HHHHHHH--------------------HHSS--SCCSEEECCSCSSCCEEEETTEEEECCCCTTT-TEEEEEEEETTEEE
T ss_pred CHHHHHH--------------------HHhc--cCCCEEEECccCCCCeEEeCCEEEEECCCCCC-CeEEEEEECCCEEE
Confidence 1100000 0011 23589999999999888889999999999965 89999888777655
Q ss_pred e
Q 009713 525 F 525 (528)
Q Consensus 525 ~ 525 (528)
.
T Consensus 173 ~ 173 (178)
T 2kkn_A 173 F 173 (178)
T ss_dssp E
T ss_pred E
Confidence 4
No 7
>1z2w_A Vacuolar protein sorting 29; VPS29, retromer, phosphatase, manganese, protein transport; 2.00A {Mus musculus} SCOP: d.159.1.7 PDB: 1z2x_A 3lh6_A 3lh7_A 3psn_A 3pso_A 1w24_A 2r17_A
Probab=98.51 E-value=1.6e-06 Score=81.40 Aligned_cols=150 Identities=16% Similarity=0.213 Sum_probs=93.1
Q ss_pred eEEEEeCCccCcH--hHHHHHHHHHhcccCCCCCCeEEEEEccCCCCCCCCCCcchhHHHHHHHHHHHHHHcCCCCCCce
Q 009713 285 MFVILSDIWLDNE--EVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHS 362 (528)
Q Consensus 285 ~~v~lSdv~ld~~--~~le~L~~ll~~~~~~~~~P~~~Vl~G~F~s~~~~~~~~~~~~~~~~f~~la~~l~~~p~l~~~~ 362 (528)
+++++||+|++.. ...+.|.+++. . ..|+.+|++||+++ .+.++.| .+. ..
T Consensus 12 ~i~~iSD~H~~~~~~~~~~~l~~~~~---~--~~~d~ii~~GDl~~-------------~~~~~~l----~~~-----~~ 64 (192)
T 1z2w_A 12 LVLVLGDLHIPHRCNSLPAKFKKLLV---P--GKIQHILCTGNLCT-------------KESYDYL----KTL-----AG 64 (192)
T ss_dssp EEEEECCCCBTTTCSSCCHHHHTTCC---T--TSCSEEEECSCCBS-------------HHHHHHH----HHH-----CS
T ss_pred EEEEEecCCCCccchhHHHHHHHHhc---c--CCCCEEEEcCCCCC-------------HHHHHHH----Hhc-----CC
Confidence 5889999998632 22233433332 2 36899999999984 1222222 221 13
Q ss_pred eEEEecCCCCCCCCCCCCCCCCchhhHHHHhhhCCceEEecCCeEEEEccEEEEEEehHHHHHHhhcccCCCCCCCCCCh
Q 009713 363 RFLFIPGPDDAGPSTVLPRCALPKYLTEELQKYIPNAIFSSNPCRIKFYTQEIVFFRQDLLYRMRRSCLIPPSREETDDP 442 (528)
Q Consensus 363 ~~v~VPG~~Dp~~~~~lPqpplp~~~~~~l~~~~~n~~~~sNPcri~~~~~eIvi~rdDl~~~l~r~~i~~p~~~~~~d~ 442 (528)
++++|+||||... .+| ....+.+.+..|+++|.... .+.. +
T Consensus 65 ~~~~v~GNhD~~~--~lp-----------------------~~~~~~~~~~~i~l~Hg~~~---------~~~~----~- 105 (192)
T 1z2w_A 65 DVHIVRGDFDENL--NYP-----------------------EQKVVTVGQFKIGLIHGHQV---------IPWG----D- 105 (192)
T ss_dssp EEEECCCTTCCCT--TSC-----------------------SEEEEEETTEEEEEECSCCC---------CBTT----C-
T ss_pred CEEEEcCCcCccc--cCC-----------------------cceEEEECCEEEEEECCCcC---------CCCC----C-
Confidence 7999999999763 122 12345678889999884320 0100 0
Q ss_pred HHHHHHHHhcCCCCCCCCCCCccccCCCCCcccccCCCcEEEecCCCCcceEEeCCeEEEcCCCCCC---------CcEE
Q 009713 443 FEHLVATITHQSHLCPLPLTVQPIIWNYDHSLHLYPTPHAIVLADKSEQKAFKYTGITCFNPGSFSS---------DSTF 513 (528)
Q Consensus 443 ~~~l~ktiL~Q~hL~Pl~~~~~pi~w~~d~~L~L~p~Pdvlil~d~~~~f~~~y~gc~~vNpGsf~~---------~~sf 513 (528)
.+.+.+ ++ -..-+++++.||.|.++...++|+.++|||+... ..+|
T Consensus 106 ~~~l~~-~~------------------------~~~~~d~vi~GHtH~~~~~~~~~~~~inpGS~~~~~~~~~~~~~~~y 160 (192)
T 1z2w_A 106 MASLAL-LQ------------------------RQFDVDILISGHTHKFEAFEHENKFYINPGSATGAYNALETNIIPSF 160 (192)
T ss_dssp HHHHHH-HH------------------------HHHSSSEEECCSSCCCEEEEETTEEEEECCCTTCCCCSSCSCCCCEE
T ss_pred HHHHHH-HH------------------------HhcCCCEEEECCcCcCccEeECCEEEEECCcccccCCCCCcCCCCcE
Confidence 111111 00 0123589999999999888889999999999842 2589
Q ss_pred EEEECCCCeEEe
Q 009713 514 VAYRPCTQEVEF 525 (528)
Q Consensus 514 ~~y~p~~~~~e~ 525 (528)
+.++...++++.
T Consensus 161 ~il~~~~~~~~~ 172 (192)
T 1z2w_A 161 VLMDIQASTVVT 172 (192)
T ss_dssp EEEEEETTEEEE
T ss_pred EEEEEECCEEEE
Confidence 888877665543
No 8
>1su1_A Hypothetical protein YFCE; structural genomics, phosphoesterase, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.25A {Escherichia coli} SCOP: d.159.1.7
Probab=98.50 E-value=1.5e-06 Score=83.03 Aligned_cols=161 Identities=19% Similarity=0.224 Sum_probs=96.9
Q ss_pred eEEEEeCCccCcHhHHHHHHHHHhcccCCCCCCeEEEEEccCCCC-CCCCCCcchhHHHHHHHHHHHHHHcCCCCCCcee
Q 009713 285 MFVILSDIWLDNEEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSH-PCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHSR 363 (528)
Q Consensus 285 ~~v~lSdv~ld~~~~le~L~~ll~~~~~~~~~P~~~Vl~G~F~s~-~~~~~~~~~~~~~~~f~~la~~l~~~p~l~~~~~ 363 (528)
+++++||+|.+ ++.|+++++.+... .|+.+|++||+++. +... ....| ...++.+.|.+.. .+
T Consensus 27 ki~~iSD~H~~----~~~l~~~l~~~~~~--~~d~vi~~GDl~~~g~~~~---~~~~~--~~~~~~~~l~~~~-----~~ 90 (208)
T 1su1_A 27 KLMFASDIHGS----LPATERVLELFAQS--GAQWLVILGDVLNHGPRNA---LPEGY--APAKVVERLNEVA-----HK 90 (208)
T ss_dssp EEEEECCCTTB----HHHHHHHHHHHHHH--TCSEEEECSCCSCCCTTSC---CCTTB--CHHHHHHHHHTTG-----GG
T ss_pred EEEEEEcCCCC----HHHHHHHHHHHHhc--CCCEEEECCCccccCcccc---ccccc--CHHHHHHHHHhcC-----Cc
Confidence 58899999965 34555566554332 58999999999974 2110 00111 0123334444321 47
Q ss_pred EEEecCCCCCCCCCCCCCCCCchhhHHHHhhhCCceEEecCCeEEEEccEEEEEEehHHHHHHhhcccCCCCCCCCCChH
Q 009713 364 FLFIPGPDDAGPSTVLPRCALPKYLTEELQKYIPNAIFSSNPCRIKFYTQEIVFFRQDLLYRMRRSCLIPPSREETDDPF 443 (528)
Q Consensus 364 ~v~VPG~~Dp~~~~~lPqpplp~~~~~~l~~~~~n~~~~sNPcri~~~~~eIvi~rdDl~~~l~r~~i~~p~~~~~~d~~ 443 (528)
+++|+||||...... ...+|.. +....+.+.+.+|+++|.+... + +
T Consensus 91 v~~V~GNHD~~~~~~--------------~~~~~~~---~~~~~~~~~g~~i~l~Hg~~~~---------~------~-- 136 (208)
T 1su1_A 91 VIAVRGNCDSEVDQM--------------LLHFPIT---APWQQVLLEKQRLFLTHGHLFG---------P------E-- 136 (208)
T ss_dssp EEECCCTTCCHHHHH--------------HSSSCCC---CSEEEEECSSCEEEEECSSSSB---------T------T--
T ss_pred eEEEECCCchHHHHh--------------hhhcccc---CceEEEEECCcEEEEECCCCCC---------c------c--
Confidence 999999999742100 0011110 1123456677888888864310 0 0
Q ss_pred HHHHHHHhcCCCCCCCCCCCccccCCCCCcccccCCCcEEEecCCCCcceEEeCCeEEEcCCCCC-----CCcEEEEEEC
Q 009713 444 EHLVATITHQSHLCPLPLTVQPIIWNYDHSLHLYPTPHAIVLADKSEQKAFKYTGITCFNPGSFS-----SDSTFVAYRP 518 (528)
Q Consensus 444 ~~l~ktiL~Q~hL~Pl~~~~~pi~w~~d~~L~L~p~Pdvlil~d~~~~f~~~y~gc~~vNpGsf~-----~~~sf~~y~p 518 (528)
.+ . .+ . -+++++.||.+.++...+.|+.++|||++. ...+|+.++.
T Consensus 137 -----------~l------------~---~~--~-~~d~vi~GHtH~~~~~~~~~~~~iNpGs~~~pr~~~~~sy~il~~ 187 (208)
T 1su1_A 137 -----------NL------------P---AL--N-QNDVLVYGHTHLPVAEQRGEIFHFNPGSVSIPKGGNPASYGMLDN 187 (208)
T ss_dssp -----------BC------------C---CC--C-TTCEEECCSSCCCEEEEETTEEEEECCCSSCCCTTCCCEEEEEET
T ss_pred -----------hh------------h---hh--c-CCCEEEECCcccCccEEeCCEEEEECCCCcCCCCCCCCEEEEEEC
Confidence 00 0 11 1 349999999999988888999999999995 2358999995
Q ss_pred CCCeEEec
Q 009713 519 CTQEVEFS 526 (528)
Q Consensus 519 ~~~~~e~~ 526 (528)
+++++-
T Consensus 188 --~~~~~~ 193 (208)
T 1su1_A 188 --DVLSVI 193 (208)
T ss_dssp --TEEEEE
T ss_pred --CeEEEE
Confidence 456553
No 9
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6
Probab=98.45 E-value=2.6e-06 Score=80.82 Aligned_cols=47 Identities=19% Similarity=0.258 Sum_probs=39.4
Q ss_pred CCcEEEecCCCCcceEEeCCeEEEcCCCCCCCcEEEEEECCCCeEEecc
Q 009713 479 TPHAIVLADKSEQKAFKYTGITCFNPGSFSSDSTFVAYRPCTQEVEFSA 527 (528)
Q Consensus 479 ~Pdvlil~d~~~~f~~~y~gc~~vNpGsf~~~~sf~~y~p~~~~~e~~~ 527 (528)
-|++++.||.| +......++.++|||++. .++|+.++....++++-.
T Consensus 180 ~~~~~~~GH~H-~~~~~~~~~~~in~Gs~~-~~~~~i~~~~~~~~~~~~ 226 (228)
T 1uf3_A 180 NPLLVLVAGKG-QKHEMLGASWVVVPGDLS-EGEYSLLDLRARKLETGN 226 (228)
T ss_dssp CCSEEEECCSS-CEEEEETTEEEEECCBGG-GTEEEEEETTTTEEEEEE
T ss_pred CCCEEEEcccc-cCccccCCceEEEecccC-CCceEEEEecceEeeecc
Confidence 48999999999 555667899999999996 689999998878887754
No 10
>2a22_A Vacuolar protein sorting 29; alpha-beta-BETA-alpha sandwich, structural genomics, structural genomics consortium, SGC, protein transport; 2.20A {Cryptosporidium parvum} SCOP: d.159.1.7
Probab=98.44 E-value=2.6e-06 Score=81.66 Aligned_cols=159 Identities=14% Similarity=0.191 Sum_probs=97.3
Q ss_pred eEEEEeCCccCcHh--HHHHHHHHHhcccCCCCCCeEEEEEccCCCCCCCCCCcchhHHHHHHHHHHHHHHcCCCCCCce
Q 009713 285 MFVILSDIWLDNEE--VMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHS 362 (528)
Q Consensus 285 ~~v~lSdv~ld~~~--~le~L~~ll~~~~~~~~~P~~~Vl~G~F~s~~~~~~~~~~~~~~~~f~~la~~l~~~p~l~~~~ 362 (528)
+++++||+|++... ..+.|.+++. . ..|+.+|++||+++ .+.++.| .+. ..
T Consensus 27 ~i~~iSD~H~~~~~~~l~~~l~~~~~---~--~~~D~vi~~GDl~~-------------~~~l~~l----~~~-----~~ 79 (215)
T 2a22_A 27 LVLLIGDLKIPYGAKELPSNFRELLA---T--DKINYVLCTGNVCS-------------QEYVEML----KNI-----TK 79 (215)
T ss_dssp EEEEECCCCTTTTCSSCCGGGHHHHH---C--TTCCEEEECSCCCC-------------HHHHHHH----HHH-----CS
T ss_pred EEEEEecCCCCCChHHHHHHHHHHHh---c--CCCCEEEECCCCCC-------------HHHHHHH----HHc-----CC
Confidence 58899999986432 2344555543 1 26899999999985 1222322 221 13
Q ss_pred eEEEecCCCCCCCCCCCCCCCCchhhHHHHhhhCCceEEecCCeEEEEccEEEEEEehHHHHHHhhcccCCCCCCCCCCh
Q 009713 363 RFLFIPGPDDAGPSTVLPRCALPKYLTEELQKYIPNAIFSSNPCRIKFYTQEIVFFRQDLLYRMRRSCLIPPSREETDDP 442 (528)
Q Consensus 363 ~~v~VPG~~Dp~~~~~lPqpplp~~~~~~l~~~~~n~~~~sNPcri~~~~~eIvi~rdDl~~~l~r~~i~~p~~~~~~d~ 442 (528)
++++|+||||.......| . + ...+|. ...+...+..|+++|.... .|.. .
T Consensus 80 ~v~~V~GNHD~~~~~~~~-----~-~----~~~lp~------~~~~~~~~~~i~l~Hg~~~---------~~~~-----~ 129 (215)
T 2a22_A 80 NVYIVSGDLDSAIFNPDP-----E-S----NGVFPE------YVVVQIGEFKIGLMHGNQV---------LPWD-----D 129 (215)
T ss_dssp CEEECCCTTCCSCCBCCG-----G-G----TBCCCS------EEEEEETTEEEEEECSTTS---------SSTT-----C
T ss_pred CEEEecCCCcCcccccCh-----h-h----HhhCCc------eEEEecCCeEEEEEcCCcc---------CCCC-----C
Confidence 799999999986422211 1 1 112332 2445678899999985431 0110 0
Q ss_pred HHHHHHHHhcCCCCCCCCCCCccccCCCCCcccccCCCcEEEecCCCCcceEEeCCeEEEcCCCCCC---------CcEE
Q 009713 443 FEHLVATITHQSHLCPLPLTVQPIIWNYDHSLHLYPTPHAIVLADKSEQKAFKYTGITCFNPGSFSS---------DSTF 513 (528)
Q Consensus 443 ~~~l~ktiL~Q~hL~Pl~~~~~pi~w~~d~~L~L~p~Pdvlil~d~~~~f~~~y~gc~~vNpGsf~~---------~~sf 513 (528)
.+.+. .++. ..-+++++.||.|.++...++|+.++|||+... ..+|
T Consensus 130 ~~~l~-~~~~------------------------~~~~d~vl~GHtH~~~~~~~~~~~~inpGS~~~~~~~~~~~~~~~y 184 (215)
T 2a22_A 130 PGSLE-QWQR------------------------RLDCDILVTGHTHKLRVFEKNGKLFLNPGTATGAFSALTPDAPPSF 184 (215)
T ss_dssp HHHHH-HHHH------------------------HHTCSEEEECSSCCCEEEEETTEEEEECCCSSCCCCTTSTTCCCEE
T ss_pred HHHHH-HHHh------------------------hcCCCEEEECCcCCCccEeeCCEEEEECCcccccCCCCCCCCCCcE
Confidence 11111 1110 112589999999999888889999999999842 3589
Q ss_pred EEEECCCCeEEe
Q 009713 514 VAYRPCTQEVEF 525 (528)
Q Consensus 514 ~~y~p~~~~~e~ 525 (528)
++++...++++.
T Consensus 185 ~il~i~~~~i~~ 196 (215)
T 2a22_A 185 MLMALQGNKVVL 196 (215)
T ss_dssp EEEEEETTEEEE
T ss_pred EEEEEeCCcEEE
Confidence 988877666543
No 11
>3ib7_A ICC protein; metallophosphoesterase, alpha-beta fold, swapped-dimer, HYDR; HET: BTB; 1.60A {Mycobacterium tuberculosis} PDB: 3ib8_A* 2hy1_A 2hyp_A 2hyo_A
Probab=98.36 E-value=5.6e-06 Score=83.22 Aligned_cols=208 Identities=13% Similarity=0.103 Sum_probs=108.3
Q ss_pred CeEEEEeCCccCcH--------hHHHHHHHHHhcccCCCCCCeEEEEEccCCCCCCCCCCcchhHHHHHHHHHHHHHHcC
Q 009713 284 DMFVILSDIWLDNE--------EVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAH 355 (528)
Q Consensus 284 ~~~v~lSdv~ld~~--------~~le~L~~ll~~~~~~~~~P~~~Vl~G~F~s~~~~~~~~~~~~~~~~f~~la~~l~~~ 355 (528)
.+|+++||+|++.. ...+.|+++++........|+.+|++||+++... ...+..+.+.++.|.+.+
T Consensus 26 ~ri~~iSD~H~~~~~~~~~~~~~~~~~l~~~l~~i~~~~~~~d~vi~~GDl~~~~~---~~~~~~~~~~l~~l~~~~--- 99 (330)
T 3ib7_A 26 YVLLHISDTHLIGGDRRLYGAVDADDRLGELLEQLNQSGLRPDAIVFTGDLADKGE---PAAYRKLRGLVEPFAAQL--- 99 (330)
T ss_dssp EEEEEECCCCBCSSSCCBTTTBCHHHHHHHHHHHHHHHTCCCSEEEECSCCBTTCC---HHHHHHHHHHHHHHHHHH---
T ss_pred eEEEEEeCCccCCCCcccccccCHHHHHHHHHHHHHhcCCCCCEEEECCCCCCCCC---HHHHHHHHHHHHHHHhhc---
Confidence 47889999999643 3456777777766541126999999999987521 112233333333332221
Q ss_pred CCCCCceeEEEecCCCCCCCCCCCCCCCCchhhHHHHhhhCCceEEecCCeEEEEccEEEEEEehHHHHHHhhcccCCCC
Q 009713 356 PRLKEHSRFLFIPGPDDAGPSTVLPRCALPKYLTEELQKYIPNAIFSSNPCRIKFYTQEIVFFRQDLLYRMRRSCLIPPS 435 (528)
Q Consensus 356 p~l~~~~~~v~VPG~~Dp~~~~~lPqpplp~~~~~~l~~~~~n~~~~sNPcri~~~~~eIvi~rdDl~~~l~r~~i~~p~ 435 (528)
..++++||||||.. ..+...+.. ... ........+.+.+..+++...... ....
T Consensus 100 -----~~pv~~v~GNHD~~-----------~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~i~lds~~~--------~~~~ 153 (330)
T 3ib7_A 100 -----GAELVWVMGNHDDR-----------AELRKFLLD-EAP-SMAPLDRVCMIDGLRIIVLDTSVP--------GHHH 153 (330)
T ss_dssp -----TCEEEECCCTTSCH-----------HHHHHHHHC-CCC-CCSCCCEEEEETTEEEEECCCCCT--------TCCS
T ss_pred -----CCCEEEeCCCCCCH-----------HHHHHHhcc-ccc-ccCCcceEEEeCCEEEEEecCCCC--------CCCC
Confidence 36899999999962 122222221 111 111122456677777776543210 0000
Q ss_pred CCCCCChHHHHHHHHhcCC---------CCCCCCCCCcccc----CCCCCc--ccccCCCcEEEecCCCCcceEEeCCeE
Q 009713 436 REETDDPFEHLVATITHQS---------HLCPLPLTVQPII----WNYDHS--LHLYPTPHAIVLADKSEQKAFKYTGIT 500 (528)
Q Consensus 436 ~~~~~d~~~~l~ktiL~Q~---------hL~Pl~~~~~pi~----w~~d~~--L~L~p~Pdvlil~d~~~~f~~~y~gc~ 500 (528)
.. -.+......+..|.+. |-.|+........ ++.+.. +.-..-+++++.||.|.+....++|+.
T Consensus 154 ~~-~~~~q~~wl~~~l~~~~~~~~iv~~Hh~p~~~~~~~~~~~~~~~~~~l~~~l~~~~v~~v~~GH~H~~~~~~~~g~~ 232 (330)
T 3ib7_A 154 GE-IRASQLGWLAEELATPAPDGTILALHHPPIPSVLDMAVTVELRDQAALGRVLRGTDVRAILAGHLHYSTNATFVGIP 232 (330)
T ss_dssp BC-CCHHHHHHHHHHTTSCCTTCEEEECSSCSSCCSSGGGGGGSBSCHHHHHHHHTTSSEEEEEECSSSSCEEEEETTEE
T ss_pred Cc-cCHHHHHHHHHHHHhcccCCeEEEEECCCCCCCccccccccccCHHHHHHHHhccCceEEEECCCCCcccceECCEE
Confidence 00 0011122233333322 2233322111000 000000 111134689999999999888899999
Q ss_pred EEcCCCCCC----------------CcEEEEEECCCCeEE
Q 009713 501 CFNPGSFSS----------------DSTFVAYRPCTQEVE 524 (528)
Q Consensus 501 ~vNpGsf~~----------------~~sf~~y~p~~~~~e 524 (528)
++|+|+... ..+|.+++...+++.
T Consensus 233 ~~~~gs~~~~~~~~~~~g~~~~~~~~~gy~iv~i~~~~~~ 272 (330)
T 3ib7_A 233 VSVASATCYTQDLTVAAGGTRGRDGAQGCNLVHVYPDTVV 272 (330)
T ss_dssp EEECCCSSCEECTTSCTTCCCEESCSCEEEEEEECSSCEE
T ss_pred EEecCcceeccCCCCCCcceeccCCCCceEEEEEECCCeE
Confidence 999988741 135777776655544
No 12
>4fbk_A DNA repair and telomere maintenance protein NBS1, protein RAD32 chimeric protein; DNA double-strand break repair, nuclease; HET: DNA; 2.38A {Schizosaccharomyces pombe} PDB: 4fbq_A*
Probab=98.27 E-value=1.3e-05 Score=85.57 Aligned_cols=217 Identities=14% Similarity=0.095 Sum_probs=116.6
Q ss_pred CeEEEEeCCccCcHh--------HHHHHHHHHhcccCCCCCCeEEEEEccCCCCCCCCCCcchhHHHHHHHHHHH-----
Q 009713 284 DMFVILSDIWLDNEE--------VMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQ----- 350 (528)
Q Consensus 284 ~~~v~lSdv~ld~~~--------~le~L~~ll~~~~~~~~~P~~~Vl~G~F~s~~~~~~~~~~~~~~~~f~~la~----- 350 (528)
-+|+.+||+||+... ..+.|+++++..... .|+++|++||..+.... +.......++.|.+
T Consensus 77 mrilhiSDlHLG~~~~~~~~~~d~~~~l~~lv~~~~~~--~~D~VliaGDLfd~~~p----s~~a~~~~~~~Lr~~~~g~ 150 (472)
T 4fbk_A 77 IRILISSDPHVGYGEKDPVRGNDSFVSFNEILEIARER--DVDMILLGGDIFHDNKP----SRKALYQALRSLRLNCLGD 150 (472)
T ss_dssp EEEEEECCCCBTTTTTCTTTTTHHHHHHHHHHHHHHHT--TCSEEEECSCSBSSSSC----CHHHHHHHHHHHHHHHBSS
T ss_pred eEEEEEecccCCCcccCcccchhHHHHHHHHHHHHHhc--CCCEEEEcCccccCCCC----CHHHHHHHHHHHHHhcccC
Confidence 478899999998653 456777777766543 79999999999987432 12333434444443
Q ss_pred ------HHHc---------C-------CCCCCceeEEEecCCCCCCCCCCCCCCCCchhhHHHHhhhCCceEEe------
Q 009713 351 ------MIAA---------H-------PRLKEHSRFLFIPGPDDAGPSTVLPRCALPKYLTEELQKYIPNAIFS------ 402 (528)
Q Consensus 351 ------~l~~---------~-------p~l~~~~~~v~VPG~~Dp~~~~~lPqpplp~~~~~~l~~~~~n~~~~------ 402 (528)
+|++ | |++...+++++|+||||...+.-+ . +....+. ...++++.
T Consensus 151 ~~~~~e~L~d~~~~~~~~~~~~vn~~dp~~~~gIpVf~I~GNHD~~~~~~~-~-----s~~~LL~-~~g~v~l~g~~~~~ 223 (472)
T 4fbk_A 151 KPCELELLSDTSLTTGDTAVCNINYLDPNINVAIPVFSIHGNHDDPSGDGR-Y-----SALDILQ-VTGLVNYFGRVPEN 223 (472)
T ss_dssp CCCCCEEEEEC-----CCCSCSSSTTCTTBCBSSCEEECCCCCCSCCC--C-C-----CHHHHHH-HTTSCEECCCCSCS
T ss_pred CcchheecchhhhhcccccccccccccccccCCCcEEEEecCCCCcccccc-c-----cHHHHhc-cCCcEEEeCCcccC
Confidence 1321 2 233458999999999998643222 0 1111111 11222221
Q ss_pred ----cCCeEEEEccEEEEEEe------hHHHHHHhhcccCC--CCCCCCCChHHHHHHHHhcCCCCCCCCCCCccccCCC
Q 009713 403 ----SNPCRIKFYTQEIVFFR------QDLLYRMRRSCLIP--PSREETDDPFEHLVATITHQSHLCPLPLTVQPIIWNY 470 (528)
Q Consensus 403 ----sNPcri~~~~~eIvi~r------dDl~~~l~r~~i~~--p~~~~~~d~~~~l~ktiL~Q~hL~Pl~~~~~pi~w~~ 470 (528)
-.|..++-.+.++.||- .++...+..+.+.. |.... .+.. ++ -+++|. +.+..+ . +|
T Consensus 224 d~i~~~pv~l~kg~~~valyGl~y~~d~rl~r~~~e~~v~~~~p~~~~-~~~~-nI--lvlH~~-~~~~~~----~--~y 292 (472)
T 4fbk_A 224 DNIVVSPILLQKGFTKLALYGISNVRDERLYHSFRENKVKFLRPDLYR-DEWF-NL--LTVHQN-HSAHTP----T--SY 292 (472)
T ss_dssp SSEEECCEEEEETTEEEEEEECCCCCHHHHHHHHHTTCEEEEEESTTG-GGEE-EE--EEEESC-SCCSST----T--SS
T ss_pred CceeEEEEEEEeCCceEEEEecCCCchhhhhhhhhhhhhhhhCccccc-CCce-EE--EEecCC-ccCCCc----c--cc
Confidence 13666776677888864 22333333333321 21000 0100 01 112332 222211 1 12
Q ss_pred CCcccccCCCcEEEecCCCCcceEE----eCCeEEEcCCCCC---------CCcEEEEEECCCCeEE
Q 009713 471 DHSLHLYPTPHAIVLADKSEQKAFK----YTGITCFNPGSFS---------SDSTFVAYRPCTQEVE 524 (528)
Q Consensus 471 d~~L~L~p~Pdvlil~d~~~~f~~~----y~gc~~vNpGsf~---------~~~sf~~y~p~~~~~e 524 (528)
-..-.+..--|++++||.|.++... ..|+.++||||-. ...+|...+...++++
T Consensus 293 ipe~ll~~g~DyValGH~H~~~~~~~~~~~~g~~ivyPGS~~~~s~~e~E~~~kg~~lveI~~~~v~ 359 (472)
T 4fbk_A 293 LPESFIQDFYDFVLWGHEHECLIDGSYNPTQKFTVVQPGSTIATSLSPGETAPKHCGILNITGKDFH 359 (472)
T ss_dssp CCGGGSCTTCSEEEEESCCSCEEEEEEETTTTEEEEECCCSSCSSCCGGGCSCCEEEEEEEETTEEE
T ss_pred CChhhhhcCCCEEEecCcccceeeecccCCCCeEEEECCCccccccCccCCCCCEEEEEEEECCEEE
Confidence 1111233446999999999888763 3578999999962 1236776665555443
No 13
>1nnw_A Hypothetical protein; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 1.90A {Pyrococcus furiosus} SCOP: d.159.1.5 PDB: 2gju_A
Probab=98.24 E-value=9.8e-06 Score=78.76 Aligned_cols=48 Identities=17% Similarity=0.079 Sum_probs=40.9
Q ss_pred CCcEEEecCCCCcceEEeCCeEEEcCCCCC------CCcEEEEEECCCCeEEec
Q 009713 479 TPHAIVLADKSEQKAFKYTGITCFNPGSFS------SDSTFVAYRPCTQEVEFS 526 (528)
Q Consensus 479 ~Pdvlil~d~~~~f~~~y~gc~~vNpGsf~------~~~sf~~y~p~~~~~e~~ 526 (528)
-+++++.||.|.++...++|+.++|||++. ...+|++++....++++.
T Consensus 167 ~~~~vi~GHtH~~~~~~~~~~~~in~Gs~~~~~~~~~~~~y~il~~~~~~v~~~ 220 (252)
T 1nnw_A 167 DYEMLIVASPMYPVDAMTRYGRVVCPGSVGFPPGKEHKATFALVDVDTLKPKFI 220 (252)
T ss_dssp TSSEEEESTTCSEEEEEETTEEEEEECCSSSCSSSSCCEEEEEEETTTCCEEEE
T ss_pred CCCEEEECCccccceEecCCeEEEECCCccCCCCCCCcceEEEEECCCCeEEEE
Confidence 458999999999999889999999999984 246899999988777764
No 14
>3ck2_A Conserved uncharacterized protein (predicted phosphoesterase COG0622); structural genomics, predicted phosphodiesterase, PSI-2; HET: SRT; 2.30A {Streptococcus pneumoniae} SCOP: d.159.1.7
Probab=98.18 E-value=5.2e-05 Score=69.95 Aligned_cols=143 Identities=15% Similarity=0.090 Sum_probs=92.6
Q ss_pred eEEEEeCCccCcHhHHHHHHHHHhcccCCCCCCeEEEEEccCCCCCCCCCCcchhHHHHHHHHHHHHHHcCCCCCCceeE
Q 009713 285 MFVILSDIWLDNEEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHSRF 364 (528)
Q Consensus 285 ~~v~lSdv~ld~~~~le~L~~ll~~~~~~~~~P~~~Vl~G~F~s~~~~~~~~~~~~~~~~f~~la~~l~~~p~l~~~~~~ 364 (528)
+++++||+|- + .+.|+++++.+.. .++.+|++||+.. +. |. .+.. .+
T Consensus 8 ~i~~isD~H~-~---~~~~~~~~~~~~~---~~d~i~~~GD~~~-~~--------------------l~---~l~~--~~ 54 (176)
T 3ck2_A 8 TIIVMSDSHG-D---SLIVEEVRDRYVG---KVDAVFHNGDSEL-RP--------------------DS---PLWE--GI 54 (176)
T ss_dssp EEEEECCCTT-C---HHHHHHHHHHHTT---TSSEEEECSCCCS-CT--------------------TC---GGGT--TE
T ss_pred EEEEEecCCC-C---HHHHHHHHHHhhc---CCCEEEECCCCch-HH--------------------HH---hhhC--Ce
Confidence 5789999993 3 3456666665543 5899999999621 10 11 1112 69
Q ss_pred EEecCCCCCCCCCCCCCCCCchhhHHHHhhhCCceEEecCCeEEEEccEEEEEEehHHHHHHhhcccCCCCCCCCCChHH
Q 009713 365 LFIPGPDDAGPSTVLPRCALPKYLTEELQKYIPNAIFSSNPCRIKFYTQEIVFFRQDLLYRMRRSCLIPPSREETDDPFE 444 (528)
Q Consensus 365 v~VPG~~Dp~~~~~lPqpplp~~~~~~l~~~~~n~~~~sNPcri~~~~~eIvi~rdDl~~~l~r~~i~~p~~~~~~d~~~ 444 (528)
++|+||||... .+|. ...+.+.+.+|+++|..... + ..+ .+
T Consensus 55 ~~v~GNhD~~~--~~p~-----------------------~~~~~~~~~~i~~~Hg~~~~------~--~~~------~~ 95 (176)
T 3ck2_A 55 RVVKGNMDFYA--GYPE-----------------------RLVTELGSTKIIQTHGHLFD------I--NFN------FQ 95 (176)
T ss_dssp EECCCTTCCST--TCCS-----------------------EEEEEETTEEEEEECSGGGT------T--TTC------SH
T ss_pred EEecCcccchh--cCCc-----------------------EEEEEECCeEEEEECCCccC------C--CCC------HH
Confidence 99999999753 2331 23556788999999976421 0 000 01
Q ss_pred HHHHHHhcCCCCCCCCCCCccccCCCCCcccccCCCcEEEecCCCCcceEEeCCeEEEcCCCCCC------CcEEEEEEC
Q 009713 445 HLVATITHQSHLCPLPLTVQPIIWNYDHSLHLYPTPHAIVLADKSEQKAFKYTGITCFNPGSFSS------DSTFVAYRP 518 (528)
Q Consensus 445 ~l~ktiL~Q~hL~Pl~~~~~pi~w~~d~~L~L~p~Pdvlil~d~~~~f~~~y~gc~~vNpGsf~~------~~sf~~y~p 518 (528)
.+.+.+ . ..-+++++.||.|.++....+|+.++|||++.. ..+|+.++.
T Consensus 96 ~l~~~~-~------------------------~~~~d~vi~GHtH~~~~~~~~~~~~inpGs~~~~~~~~~~~~y~il~~ 150 (176)
T 3ck2_A 96 KLDYWA-Q------------------------EEEAAICLYGHLHVPSAWLEGKILFLNPGSISQPRGTIRECLYARVEI 150 (176)
T ss_dssp HHHHHH-H------------------------HTTCSEEECCSSCCEEEEEETTEEEEEECCSSSCCTTCCSCCEEEEEE
T ss_pred HHHHHH-H------------------------hcCCCEEEECCcCCCCcEEECCEEEEECCCCCcCCCCCCCCeEEEEEE
Confidence 111111 0 123588999999999888889999999999851 268998888
Q ss_pred CCCeEE
Q 009713 519 CTQEVE 524 (528)
Q Consensus 519 ~~~~~e 524 (528)
..++++
T Consensus 151 ~~~~~~ 156 (176)
T 3ck2_A 151 DDSYFK 156 (176)
T ss_dssp CSSEEE
T ss_pred cCCEEE
Confidence 776543
No 15
>4fbw_A DNA repair protein RAD32; DNA double-strand break repair, nuclease, hydrolase; HET: DNA; 2.20A {Schizosaccharomyces pombe} PDB: 4fcx_B*
Probab=98.11 E-value=1.6e-05 Score=83.88 Aligned_cols=218 Identities=14% Similarity=0.104 Sum_probs=113.3
Q ss_pred CCeEEEEeCCccCcH--------hHHHHHHHHHhcccCCCCCCeEEEEEccCCCCCCCCCCcchhHHHHHHHHHHHH---
Q 009713 283 NDMFVILSDIWLDNE--------EVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQM--- 351 (528)
Q Consensus 283 ~~~~v~lSdv~ld~~--------~~le~L~~ll~~~~~~~~~P~~~Vl~G~F~s~~~~~~~~~~~~~~~~f~~la~~--- 351 (528)
.-+|+.+||+||+.. ...+.|+++++..... .|+++|++||..+.... +...+....+.|.+.
T Consensus 13 ~mrilhiSDlHLg~~~~~~~~~~d~~~~l~~lv~~~~~~--~~D~VliaGDLfd~~~p----~~~~~~~~~~~lr~~~~g 86 (417)
T 4fbw_A 13 TIRILISSDPHVGYGEKDPVRGNDSFVSFNEILEIARER--DVDMILLGGDIFHDNKP----SRKALYQALRSLRLNCLG 86 (417)
T ss_dssp CEEEEEECCCCBTTTTTCTTTTTHHHHHHHHHHHHHHHT--TCSEEEECSCCBSSSSC----CHHHHHHHHHHHHHHHBS
T ss_pred CeEEEEEEcCCCCCcccccccchhHHHHHHHHHHHHHhc--CCCEEEEcCccccCCCC----CHHHHHHHHHHHHHhccc
Confidence 347889999999964 3456777777766553 79999999999987432 123333333333331
Q ss_pred --------HH---------cC-------CCCCCceeEEEecCCCCCCCCCCCCCCCCchhhHHHHhhhCCceEE------
Q 009713 352 --------IA---------AH-------PRLKEHSRFLFIPGPDDAGPSTVLPRCALPKYLTEELQKYIPNAIF------ 401 (528)
Q Consensus 352 --------l~---------~~-------p~l~~~~~~v~VPG~~Dp~~~~~lPqpplp~~~~~~l~~~~~n~~~------ 401 (528)
|+ .| |++...+++++|+||||...+.-+ . +....+. ...++++
T Consensus 87 ~~~~~~e~L~d~~~~~~~~~~~~~n~~d~~~~~gIpV~~I~GNHD~~~~~~~-~-----s~~~lL~-~~g~v~l~g~~~~ 159 (417)
T 4fbw_A 87 DKPCELELLSDTSLTTGDTAVCNINYLDPNINVAIPVFSIHGNHDDPSGDGR-Y-----SALDILQ-VTGLVNYFGRVPE 159 (417)
T ss_dssp SCCCCCEECC------------CCGGGCTTBCBSSCEEECCCGGGC-----C-C-----CHHHHHH-HTTSCEECCCCC-
T ss_pred CCcccceeccchhhhcccccccccccccccccCCCeEEEEecCCCCcccccc-c-----cHHHHhc-cCCeEEEeCCccc
Confidence 21 12 334568999999999998643221 0 0011111 1112211
Q ss_pred ----ecCCeEEEEccEEEEEEe-----h-HHHHHHhhcccCC--CCCCCCCChHHHHHHHHhcCCCCCCCCCCCccccCC
Q 009713 402 ----SSNPCRIKFYTQEIVFFR-----Q-DLLYRMRRSCLIP--PSREETDDPFEHLVATITHQSHLCPLPLTVQPIIWN 469 (528)
Q Consensus 402 ----~sNPcri~~~~~eIvi~r-----d-Dl~~~l~r~~i~~--p~~~~~~d~~~~l~ktiL~Q~hL~Pl~~~~~pi~w~ 469 (528)
.-.|..++-.+.++.+|- + ++-..+..+.+.. |.... .+.. ++ -+++|.+ .+..+ . +
T Consensus 160 ~~~i~~~pv~l~~g~~~valyG~~~~~d~rl~r~~~~~~v~~~~p~~~~-~~~~-nI--lvlH~~~-~~~~~----~--~ 228 (417)
T 4fbw_A 160 NDNIVVSPILLQKGFTKLALYGISNVRDERLYHSFRENKVKFLRPDLYR-DEWF-NL--LTVHQNH-SAHTP----T--S 228 (417)
T ss_dssp --CEEECCEEEEETTEEEEEEEECCCCHHHHHHHHHTTCEEEEEESTTT-TTSE-EE--EEEESCS-SCSSS----S--S
T ss_pred CCceeEEeEEEEecCceEEEEeccCCchhhhhhhhhhhhhhhcCccccc-CCce-EE--EEecCCc-cCCCC----c--c
Confidence 124667776677787763 2 2223333333321 21100 0100 00 1223322 22111 0 1
Q ss_pred CCCcccccCCCcEEEecCCCCcceEE----eCCeEEEcCCCCC---------CCcEEEEEECCCCeEE
Q 009713 470 YDHSLHLYPTPHAIVLADKSEQKAFK----YTGITCFNPGSFS---------SDSTFVAYRPCTQEVE 524 (528)
Q Consensus 470 ~d~~L~L~p~Pdvlil~d~~~~f~~~----y~gc~~vNpGsf~---------~~~sf~~y~p~~~~~e 524 (528)
|-..-.+..--|++++||.|.++... ..|+.++||||-. ...+|...+...++++
T Consensus 229 yip~~l~~~~~DyvalGH~H~~~~~~~~~~~~g~~i~~PGS~~~~s~~e~E~~~kg~~lvei~~~~~~ 296 (417)
T 4fbw_A 229 YLPESFIQDFYDFVLWGHEHECLIDGSYNPTQKFTVVQPGSTIATSLSPGETAPKHCGILNITGKDFH 296 (417)
T ss_dssp SCCGGGSCTTCSEEEEESCCSCEEEEEEETTTTEEEEECCCSSCSSCCHHHHSCCEEEEEEEETTEEE
T ss_pred cCchhHhhcCCCEEEecCccccceeccccCCCCEEEEECCCCCcCCCccccCCCCEEEEEEEECCEEE
Confidence 11111233345999999999888763 4688999999962 1336776665555443
No 16
>3av0_A DNA double-strand break repair protein MRE11; DNA repair, calcineurin-like phosphoesterase, ABC transporte domain-like; HET: DNA AGS; 3.10A {Methanocaldococcus jannaschii} PDB: 3auz_A*
Probab=98.04 E-value=0.00021 Score=74.45 Aligned_cols=82 Identities=12% Similarity=0.325 Sum_probs=51.7
Q ss_pred cCCeEEEEeCCccCcH---------hHHHHHHHHHhcccCCCCCCeEEEEEccCCCCCCCCCCcchhHHHHHHHHHHHHH
Q 009713 282 ANDMFVILSDIWLDNE---------EVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMI 352 (528)
Q Consensus 282 ~~~~~v~lSdv~ld~~---------~~le~L~~ll~~~~~~~~~P~~~Vl~G~F~s~~~~~~~~~~~~~~~~f~~la~~l 352 (528)
..-+|+.+||+|++.. ..++.|..+++.... ..|+++|++||+++.... ....+....+.|.. |
T Consensus 19 ~~mrilhiSD~Hlg~~~~~~~~r~~~~~~~l~~~v~~~~~--~~~D~VliaGDl~d~~~p----~~~~~~~~~~~l~~-L 91 (386)
T 3av0_A 19 SHMMFVHIADNHLGYRQYNLDDREKDIYDSFKLCIKKILE--IKPDVVLHSGDLFNDLRP----PVKALRIAMQAFKK-L 91 (386)
T ss_dssp CCCEEEEECCCCBTCCGGGCHHHHHHHHHHHHHHHHHHHT--TCCSEEEECSCSBSSSSC----CHHHHHHHHHHHHH-H
T ss_pred CCeEEEEEccCCCCccccCcchhhHHHHHHHHHHHHHHHH--cCCCEEEECCCCCCCCCC----CHHHHHHHHHHHHH-H
Confidence 3447899999999953 123557777765544 379999999999876421 11222222222222 2
Q ss_pred HcCCCCCCceeEEEecCCCCCCC
Q 009713 353 AAHPRLKEHSRFLFIPGPDDAGP 375 (528)
Q Consensus 353 ~~~p~l~~~~~~v~VPG~~Dp~~ 375 (528)
.+ ..+++++||||||...
T Consensus 92 ~~-----~~~pv~~v~GNHD~~~ 109 (386)
T 3av0_A 92 HE-----NNIKVYIVAGNHEMPR 109 (386)
T ss_dssp HH-----TTCEEEECCCGGGSCS
T ss_pred Hh-----cCCcEEEEcCCCCCCc
Confidence 11 1468999999999864
No 17
>3t1i_A Double-strand break repair protein MRE11A; DNA repair, MRN complex, metallophosphatase, exonuclease, endonuclease, RAD50, NBS1, hydrolase; 3.00A {Homo sapiens}
Probab=97.94 E-value=0.00011 Score=77.88 Aligned_cols=220 Identities=15% Similarity=0.141 Sum_probs=110.8
Q ss_pred CeEEEEeCCccCcHh--------HHHHHHHHHhcccCCCCCCeEEEEEccCCCCCCCCCCcchhHHHHHHHHHH------
Q 009713 284 DMFVILSDIWLDNEE--------VMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLG------ 349 (528)
Q Consensus 284 ~~~v~lSdv~ld~~~--------~le~L~~ll~~~~~~~~~P~~~Vl~G~F~s~~~~~~~~~~~~~~~~f~~la------ 349 (528)
-+|+.+||+|++... ..+.|+.+++.... ..|+++|++||+.+..... ......+.+.+.++.
T Consensus 33 mrilhiSDlHLg~~~~~~~~~~d~~~~l~~ll~~~~~--~~~D~VliaGDlfd~~~~~-~~~~~~~~~~L~r~~~~~~~~ 109 (431)
T 3t1i_A 33 FKILVATDIHLGFMEKDAVRGNDTFVTLDEILRLAQE--NEVDFILLGGDLFHENKPS-RKTLHTCLELLRKYCMGDRPV 109 (431)
T ss_dssp EEEEEECCCCBTTTSSCTTTTTHHHHHHHHHHHHHHH--TTCSEEEECSCCBSSSSCC-HHHHHHHHHHHHHHHBCSSCC
T ss_pred EEEEEEeccCCCCcccccchhhhHHHHHHHHHHHHhh--cCCCEEEEcCccccCCCCC-HHHHHHHHHHHHHHhccCCcc
Confidence 468899999998652 34566777765544 3799999999999874321 112233333333322
Q ss_pred --HHHH----------------cCCCCCCceeEEEecCCCCCCCCCCCCCCCCchhhHHHHhhhCCceE-Ee--------
Q 009713 350 --QMIA----------------AHPRLKEHSRFLFIPGPDDAGPSTVLPRCALPKYLTEELQKYIPNAI-FS-------- 402 (528)
Q Consensus 350 --~~l~----------------~~p~l~~~~~~v~VPG~~Dp~~~~~lPqpplp~~~~~~l~~~~~n~~-~~-------- 402 (528)
++|+ +.|++...++|++|+||||.....- .+. ....+ +....++ |.
T Consensus 110 ~~~~lsd~~~~~~~~~~~~~ny~d~n~~~~ipV~~I~GNHD~~~g~~----~l~--~~~lL-~~~glv~~fg~~~~~e~i 182 (431)
T 3t1i_A 110 QFEILSDQSVNFGFSKFPWVNYQDGNLNISIPVFSIHGNHDDPTGAD----ALC--ALDIL-SCAGFVNHFGRSMSVEKI 182 (431)
T ss_dssp CCEECSCC------------------CCBCSCEEECCCSSSCCBTTT----TBC--HHHHH-HHHTSEEECCCCCCSSCE
T ss_pred cceeccchhhccccccccccccccccccCCCcEEEEccCCCCccccc----ccC--HHHHh-ccCCcEEEECCcCcccce
Confidence 0011 1244556799999999999753210 000 01111 1112221 22
Q ss_pred -cCCeEEEEccEEEEEEe-----hHHHHHH-hhccc--CCCCCCCCCChHHHHHHHHhcCCCCCCCCCCCccccCCCCCc
Q 009713 403 -SNPCRIKFYTQEIVFFR-----QDLLYRM-RRSCL--IPPSREETDDPFEHLVATITHQSHLCPLPLTVQPIIWNYDHS 473 (528)
Q Consensus 403 -sNPcri~~~~~eIvi~r-----dDl~~~l-~r~~i--~~p~~~~~~d~~~~l~ktiL~Q~hL~Pl~~~~~pi~w~~d~~ 473 (528)
-.|..++-.+.++.+|- +.-+.++ ..+.+ ..|.... + ..+.=-+++| ++++... . +|-..
T Consensus 183 ~~~Pv~l~~g~~~valyGl~~~~~~~l~~~~~~~~v~~~~p~~~~--~--~~~~Ilv~H~-~~~~~g~--~----~~ip~ 251 (431)
T 3t1i_A 183 DISPVLLQKGSTKIALYGLGSIPDERLYRMFVNKKVTMLRPKEDE--N--SWFNLFVIHQ-NRSKHGS--T----NFIPE 251 (431)
T ss_dssp EECCEEEEETTEEEEEEEECCCCHHHHHHHHHTTCEEECCCSSCG--G--GEEEEEEECS-CCSCSSS--S----SSCCG
T ss_pred eeEEEEEecCCEeEEEEeCCCCCHHHHhhhhccccceeecccccC--C--CceEEEEECC-CccCCCc--c----ccCCH
Confidence 13656665667777763 4334443 22233 1221100 0 0000011222 2222111 0 11111
Q ss_pred ccccCCCcEEEecCCCCcceEE----eCCeEEEcCCCCCC---------CcEEEEEECCCCeEE
Q 009713 474 LHLYPTPHAIVLADKSEQKAFK----YTGITCFNPGSFSS---------DSTFVAYRPCTQEVE 524 (528)
Q Consensus 474 L~L~p~Pdvlil~d~~~~f~~~----y~gc~~vNpGsf~~---------~~sf~~y~p~~~~~e 524 (528)
-.+..--|++++||.|.+.... ..|..++||||-.. ..+|+..+...++++
T Consensus 252 ~l~~~~~Dyv~lGH~H~~~~~~~~~~~~~~~i~yPGS~~~~s~~e~E~~~k~~~lvei~~~~~~ 315 (431)
T 3t1i_A 252 QFLDDFIDLVIWGHEHECKIAPTKNEQQLFYISQPGSSVVTSLSPGEAVKKHVGLLRIKGRKMN 315 (431)
T ss_dssp GGSCTTCCEEEECSCCSCEEEEEECTTTCCEEEECCCSSCCSCCHHHHSCCEEEEEEEETTEEE
T ss_pred hHhhCCCCEEEecccccccccccccCCCCEEEEeCCCCcccCcCcccCCCCEEEEEEEECCEEE
Confidence 1122335999999999887653 35789999999631 236766665555433
No 18
>3rqz_A Metallophosphoesterase; PSI-biology, midwest center for structural genomics, MCSG, Zn binding, hydrolase; 1.95A {Sphaerobacter thermophilus} SCOP: d.159.1.0
Probab=97.90 E-value=2.6e-05 Score=75.95 Aligned_cols=48 Identities=17% Similarity=0.327 Sum_probs=38.4
Q ss_pred CcEEEecCCCCcceEEe---------------------CCeEEEcCCCCC--C----CcEEEEEECCCCeEEecc
Q 009713 480 PHAIVLADKSEQKAFKY---------------------TGITCFNPGSFS--S----DSTFVAYRPCTQEVEFSA 527 (528)
Q Consensus 480 Pdvlil~d~~~~f~~~y---------------------~gc~~vNpGsf~--~----~~sf~~y~p~~~~~e~~~ 527 (528)
+++++.||.|.++.... .|..+|||||.. . ..+|+.|++.+.++++..
T Consensus 143 ~~l~i~GHtH~p~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~ivNpGSVG~Prdg~p~A~Y~i~d~~~~~v~~~r 217 (246)
T 3rqz_A 143 TPLCFVGHTHVPLYIREDEALSNVAPHHPNDGEVLDVSSGRYIINPGAVGQPRDGDPRASYAIFEPDAQRVTFHR 217 (246)
T ss_dssp SSEEECCSSSSEEEEEHHHHHTTCCCBCCCTTCEEECSSSCEEEEECCSSCCCSSCCSEEEEEEEGGGTEEEEEE
T ss_pred CCEEEECCcCcccEEEecccccccccccccccceeecCCCeEEEECCccCCCCCcCCcceEEEEECCCCEEEEEE
Confidence 58999999998887652 378999999983 1 238999999988888753
No 19
>2q8u_A Exonuclease, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.20A {Thermotoga maritima MSB8} PDB: 3thn_A
Probab=97.87 E-value=0.00013 Score=74.35 Aligned_cols=103 Identities=17% Similarity=0.177 Sum_probs=56.1
Q ss_pred CeEEEEeCCccC----cH--------hHHHHHHHHHhcccCCCCCCeEEEEEcc-CCCCCCCCCCcchhHHHHHHHHHHH
Q 009713 284 DMFVILSDIWLD----NE--------EVMGKLEVVLDGFESVEVVPSLFVFMGN-FCSHPCNLSFHSFSSLRLQFGKLGQ 350 (528)
Q Consensus 284 ~~~v~lSdv~ld----~~--------~~le~L~~ll~~~~~~~~~P~~~Vl~G~-F~s~~~~~~~~~~~~~~~~f~~la~ 350 (528)
-+|+.+||+|++ .. ...+.|+.+++..... .|+++|++|| +.+..... ......+.+.|++|.+
T Consensus 19 mrilh~SD~HlG~~~~~~~~~~~r~~~~~~~l~~lv~~~~~~--~~D~vliaGD~l~d~~~~~-~~~~~~~~~~l~~L~~ 95 (336)
T 2q8u_A 19 LKILHTSDWHLGVTSWTSSRPVDRREELKKALDKVVEEAEKR--EVDLILLTGDLLHSRNNPS-VVALHDLLDYLKRMMR 95 (336)
T ss_dssp EEEEEEECCCBTCEECTTTCCEECHHHHHHHHHHHHHHHHHH--TCSEEEEESCSBSCSSCCC-HHHHHHHHHHHHHHHH
T ss_pred eEEEEECcccCCCCccccccCcChhHHHHHHHHHHHHHHHHh--CCCEEEECCccccCCCCCC-HHHHHHHHHHHHHHHh
Confidence 368889999999 32 1234566666654432 6999999999 88753211 1111223333333321
Q ss_pred HHHcCCCCCCceeEEEecCCCCCCCCCCCCCCCCchhhHHHHhhhCCceEEecCCeEE
Q 009713 351 MIAAHPRLKEHSRFLFIPGPDDAGPSTVLPRCALPKYLTEELQKYIPNAIFSSNPCRI 408 (528)
Q Consensus 351 ~l~~~p~l~~~~~~v~VPG~~Dp~~~~~lPqpplp~~~~~~l~~~~~n~~~~sNPcri 408 (528)
.+++++||||||... + ..+...+...-+|+++..|+..+
T Consensus 96 ----------~~pv~~i~GNHD~~~---~------~~~~~~l~~~g~nv~v~~~~~~~ 134 (336)
T 2q8u_A 96 ----------TAPVVVLPGNHDWKG---L------KLFGNFVTSISSDITFVMSFEPV 134 (336)
T ss_dssp ----------HSCEEECCC---------C------HHHHHHHHHHCSSEEECCSSSCE
T ss_pred ----------cCCEEEECCCCCccc---c------ccHHHHHHhcCCEEEEEeccccc
Confidence 157999999999752 1 22222222222468888888763
No 20
>3qfm_A SAPH, putative uncharacterized protein; sandwich fold, asymmetric AP4A hydrolase, phosphodiesterase, binding, Mn2+ binding, hydrolase; 1.90A {Streptococcus pneumoniae} PDB: 3qfn_A 3qfo_A*
Probab=97.86 E-value=7.6e-05 Score=74.07 Aligned_cols=188 Identities=14% Similarity=0.119 Sum_probs=101.5
Q ss_pred CCeEEEEeCCccCcHhHHHHHHHHHhcccCCCCCCeEEEEEccCCCCCCCCCCcchhHHHHHHHHHHHHHHcCCCCCCce
Q 009713 283 NDMFVILSDIWLDNEEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHS 362 (528)
Q Consensus 283 ~~~~v~lSdv~ld~~~~le~L~~ll~~~~~~~~~P~~~Vl~G~F~s~~~~~~~~~~~~~~~~f~~la~~l~~~p~l~~~~ 362 (528)
..+++++||+|-+ +++|+.+++..... .|+.+|++||+++..- .. .++.+.|.+. .
T Consensus 11 ~~~i~~iSDiHg~----~~~l~~vl~~~~~~--~~D~ii~~GDlv~~g~----~~--------~~~~~~l~~~------~ 66 (270)
T 3qfm_A 11 MTKIALLSDIHGN----TTALEAVLADARQL--GVDEYWLLGDILMPGT----GR--------RRILDLLDQL------P 66 (270)
T ss_dssp CEEEEEECCCTTC----HHHHHHHHHHHHHT--TCCEEEECSCCSSSSS----CS--------HHHHHHHHTS------C
T ss_pred ccEEEEEecCCCC----HHHHHHHHHHHHhc--CCCEEEEcCCCCCCCC----CH--------HHHHHHHHcc------C
Confidence 3579999999943 35666677665543 6899999999997411 11 1233344432 2
Q ss_pred eEEEecCCCCCCCCC-CCCCCCCchh----h---HHHHhhhCC--c-eEEecCCeEE--EEccEEEEEEehHHHHHHhhc
Q 009713 363 RFLFIPGPDDAGPST-VLPRCALPKY----L---TEELQKYIP--N-AIFSSNPCRI--KFYTQEIVFFRQDLLYRMRRS 429 (528)
Q Consensus 363 ~~v~VPG~~Dp~~~~-~lPqpplp~~----~---~~~l~~~~~--n-~~~~sNPcri--~~~~~eIvi~rdDl~~~l~r~ 429 (528)
.+++|+||||-.... ......+... + ..-..+.+. + -.+.+=|..+ .+.+..|+++|..-.... .
T Consensus 67 ~~~~v~GNhD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~L~~LP~~~~~~~~g~~i~lvHg~p~~~~--~ 144 (270)
T 3qfm_A 67 ITARVLGNWEDSLWHGVRKELDSTRPSQRYLLRQCQYVLEEISLEEIEVLHNQPLQIHRQFGDLTVGISHHLPDKNW--G 144 (270)
T ss_dssp EEEECCCHHHHHHHHHHTTCSCTTSHHHHHHHHHHHHHHTTSCHHHHHHHHSCCSEEEEEETTEEEEEESSBTTBSS--S
T ss_pred CEEEEcCChHHHHHHhhccccCCCcHHHHHHHHHHHHHHHHcCHHHHHHHHhCCCceEEEECCcEEEEEECCCCCCC--C
Confidence 588999999974210 0000011110 0 000001111 0 0112335544 457889998885321100 0
Q ss_pred ccCCCCCCCCCChHHHHHHHHhcCCCCCCCCCCCccccCCCCCcccccCCCcEEEecCCCCcceEE-eCCeEEEcCCCCC
Q 009713 430 CLIPPSREETDDPFEHLVATITHQSHLCPLPLTVQPIIWNYDHSLHLYPTPHAIVLADKSEQKAFK-YTGITCFNPGSFS 508 (528)
Q Consensus 430 ~i~~p~~~~~~d~~~~l~ktiL~Q~hL~Pl~~~~~pi~w~~d~~L~L~p~Pdvlil~d~~~~f~~~-y~gc~~vNpGsf~ 508 (528)
....|. ...+.+. .++. ..-.++++.||.|.++... ..|+.+|||||..
T Consensus 145 ~~~~~~-----~~~~~l~-~~~~------------------------~~~~d~~i~GHtH~~~~~~~~~~~~~iNpGSvg 194 (270)
T 3qfm_A 145 RELIHT-----GKQEEFD-RLVT------------------------HPPCDIAVYGHIHQQLLRYGTGGQLIVNPGSIG 194 (270)
T ss_dssp STTSTT-----CCHHHHH-HTTT------------------------TTTCSEEECCSSCSEEEEECTTSCEEEEECCSS
T ss_pred ceecCC-----CcHHHHH-HHhc------------------------ccCCCEEEECCcCchHheeccCCEEEEECCCcc
Confidence 111111 0111111 1110 1235899999999988876 4799999999984
Q ss_pred -C-----------CcEEEEEECCCC---eEEec
Q 009713 509 -S-----------DSTFVAYRPCTQ---EVEFS 526 (528)
Q Consensus 509 -~-----------~~sf~~y~p~~~---~~e~~ 526 (528)
. ..+|++++...+ ++++.
T Consensus 195 ~pr~~~~~~~~~~~asyaild~~~~~~~~v~~~ 227 (270)
T 3qfm_A 195 QPFFLDAQLRKDLRAQYMILEFDDKGLVDMDFR 227 (270)
T ss_dssp SCCCSSTTGGGCCCEEEEEEEEETTEEEEEEEE
T ss_pred CCCCCCccccCCCCCEEEEEEecCCCceEEEEE
Confidence 1 258999998765 45553
No 21
>3tho_B Exonuclease, putative; adenosine triphosphate, bacterial proteins, DNA breaks, DOUB stranded, DNA repair, DNA repair enzymes; HET: ADP; 2.61A {Thermotoga maritima} PDB: 3qg5_C
Probab=97.82 E-value=0.00058 Score=70.98 Aligned_cols=76 Identities=18% Similarity=0.227 Sum_probs=46.2
Q ss_pred eEEEEeCCccCcH------------hHHHHHHHHHhcccCCCCCCeEEEEEccCC-CCCCCCCCcchhHHHHHHHHHHHH
Q 009713 285 MFVILSDIWLDNE------------EVMGKLEVVLDGFESVEVVPSLFVFMGNFC-SHPCNLSFHSFSSLRLQFGKLGQM 351 (528)
Q Consensus 285 ~~v~lSdv~ld~~------------~~le~L~~ll~~~~~~~~~P~~~Vl~G~F~-s~~~~~~~~~~~~~~~~f~~la~~ 351 (528)
+|+.+||+|++.. ...+.|..+++.... ..|+++|++||+. +..... ......+.+.+..|..
T Consensus 2 rilh~SD~Hlg~~~~~~~~g~~~~~~~~~~l~~l~~~~~~--~~~D~vliaGDl~hd~~~~~-~~~~~~~~~~l~~l~~- 77 (379)
T 3tho_B 2 KILHTSDWHLGVTSWTSSRPVDRREELKKALDKVVEEAEK--REVDLILLTGDLLHSRNNPS-VVALHDLLDYLKRMMR- 77 (379)
T ss_dssp EEEEECCCCBTCEECSSSSCEECHHHHHHHHHHHHHHHHH--HTCSEEEECSCCBSCSSSCC-HHHHHHHHHHHHHHHH-
T ss_pred eEEEEcccCCCCCccccccCcChhHHHHHHHHHHHHHHHh--cCCCEEEECCCccccCCCCC-HHHHHHHHHHHHHHHh-
Confidence 5788999999886 112344455443333 2699999999999 764321 1112223333333321
Q ss_pred HHcCCCCCCceeEEEecCCCCC
Q 009713 352 IAAHPRLKEHSRFLFIPGPDDA 373 (528)
Q Consensus 352 l~~~p~l~~~~~~v~VPG~~Dp 373 (528)
.+++++||||||.
T Consensus 78 ---------~~~v~~i~GNHD~ 90 (379)
T 3tho_B 78 ---------TAPVVVLPGNQDW 90 (379)
T ss_dssp ---------HSCEEECCCTTSC
T ss_pred ---------CCCEEEEcCCCcc
Confidence 1579999999994
No 22
>1xm7_A Hypothetical protein AQ_1665; structural genomics, protein structure initi midwest center for structural genomics, PSI, MCSG, unknown; 2.40A {Aquifex aeolicus} SCOP: d.159.1.8
Probab=97.57 E-value=0.00072 Score=63.19 Aligned_cols=157 Identities=17% Similarity=0.168 Sum_probs=83.8
Q ss_pred eEEEEeCCccCcHhHH---------HHHHHHHhcccCCCCCCeEEEEEccCCCCCCCCCCcchhHHHHHHHHHHHHHHcC
Q 009713 285 MFVILSDIWLDNEEVM---------GKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAH 355 (528)
Q Consensus 285 ~~v~lSdv~ld~~~~l---------e~L~~ll~~~~~~~~~P~~~Vl~G~F~s~~~~~~~~~~~~~~~~f~~la~~l~~~ 355 (528)
+++++||+|++..... +.++.+++.+.+....|+.+|++||+++.. . .... +.+.|.+.
T Consensus 3 ~i~~iSD~H~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~D~vi~~GDl~~~~--~---~~~~-------~~~~l~~l 70 (195)
T 1xm7_A 3 MMYFISDTHFYHENIINLNPEVRFKGFEIVILTNLLKVLKPEDTLYHLGDFTWHF--N---DKNE-------YLRIWKAL 70 (195)
T ss_dssp CEEEEBCCCBTCTTHHHHSTTTCCTTHHHHHHHHHHTTCCTTCEEEECSCCBSCS--C---CTTS-------HHHHHHHS
T ss_pred EEEEEeccccCCCccccccCCCCHHHHHHHHHHHHHHhCCCCCEEEECCCCCCCc--h---hHHH-------HHHHHHHC
Confidence 5889999999765321 123334443333113689999999998752 1 1111 22334433
Q ss_pred CCCCCceeEEEecCCCCCCCCCCCCCCCCchhhHHHHhhhCCceEEecCCeEEE-EccEEEEEEehHHHHHHhhcccCCC
Q 009713 356 PRLKEHSRFLFIPGPDDAGPSTVLPRCALPKYLTEELQKYIPNAIFSSNPCRIK-FYTQEIVFFRQDLLYRMRRSCLIPP 434 (528)
Q Consensus 356 p~l~~~~~~v~VPG~~Dp~~~~~lPqpplp~~~~~~l~~~~~n~~~~sNPcri~-~~~~eIvi~rdDl~~~l~r~~i~~p 434 (528)
+ .++++||||||.... .+...+.. .+...++. +.+..|+++|..... +
T Consensus 71 ~-----~~~~~v~GNhD~~~~--------------~~~~~~~~---l~~~~~l~~~~~~~i~~~H~~~~~---------~ 119 (195)
T 1xm7_A 71 P-----GRKILVMGNHDKDKE--------------SLKEYFDE---IYDFYKIIEHKGKRILLSHYPAKD---------P 119 (195)
T ss_dssp S-----SEEEEECCTTCCCHH--------------HHTTTCSE---EESSEEEEEETTEEEEEESSCSSC---------S
T ss_pred C-----CCEEEEeCCCCCchh--------------hhhhhhhc---hhHHHHHHhcCCcEEEEEccCCcC---------C
Confidence 2 379999999997420 01111111 12234555 678888888853210 0
Q ss_pred CCCCCCC-hHHHHHHHHhcCCCCCCCCCCCccccCCCCCcccccCCCcEEEecCCCCcceEEeC-----CeEEEcCCCCC
Q 009713 435 SREETDD-PFEHLVATITHQSHLCPLPLTVQPIIWNYDHSLHLYPTPHAIVLADKSEQKAFKYT-----GITCFNPGSFS 508 (528)
Q Consensus 435 ~~~~~~d-~~~~l~ktiL~Q~hL~Pl~~~~~pi~w~~d~~L~L~p~Pdvlil~d~~~~f~~~y~-----gc~~vNpGsf~ 508 (528)
...... ..+.+.+.+ .-+ -+++++.||.|.++...++ |..++|+|+-.
T Consensus 120 -~~~~~~~~~~~l~~~~------------------------~~~-~~~~vi~GHtH~~~~~~~~g~~~~g~~~~nvg~~~ 173 (195)
T 1xm7_A 120 -ITERYPDRQEMVREIY------------------------FKE-NCDLLIHGHVHWNREGIKCACKDYRIECINANVEW 173 (195)
T ss_dssp -SCCSCHHHHHHHHHHH------------------------HHT-TCSEEEECCCCCCSCC--CCTTSSSCCEEECBGGG
T ss_pred -CcccccchHHHHHHHH------------------------HHc-CCcEEEECCcCCCCcccccccccCCcceEEEeEec
Confidence 000000 011111111 001 2489999999988877665 77789999754
Q ss_pred CC
Q 009713 509 SD 510 (528)
Q Consensus 509 ~~ 510 (528)
.+
T Consensus 174 ~~ 175 (195)
T 1xm7_A 174 ND 175 (195)
T ss_dssp TT
T ss_pred cC
Confidence 44
No 23
>3d03_A Phosphohydrolase; glycerophosphodiesterase, metallohydrolase, phosphatase, metal ION; 1.90A {Enterobacter aerogenes} SCOP: d.159.1.11 PDB: 2zoa_A 2zo9_B 2dxn_A 2dxl_A
Probab=97.45 E-value=0.00032 Score=68.23 Aligned_cols=75 Identities=16% Similarity=0.269 Sum_probs=53.0
Q ss_pred eEEEEeCCccCc--------HhHHHHHHHHHhcccCCCCCCeEEEEEccCCCCCCCCCCcchhHHHHHHHHHHHHHHcCC
Q 009713 285 MFVILSDIWLDN--------EEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHP 356 (528)
Q Consensus 285 ~~v~lSdv~ld~--------~~~le~L~~ll~~~~~~~~~P~~~Vl~G~F~s~~~~~~~~~~~~~~~~f~~la~~l~~~p 356 (528)
+|+++||+|++. ....+.|+.+++........|+.+|++||+++... .. .++.+.+.|.++
T Consensus 2 ri~~iSD~H~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~~~d~vi~~GDl~~~~~------~~----~~~~~~~~l~~l- 70 (274)
T 3d03_A 2 LLAHISDTHFRSRGEKLYGFIDVNAANADVVSQLNALRERPDAVVVSGDIVNCGR------PE----EYQVARQILGSL- 70 (274)
T ss_dssp EEEEECCCCBCSTTCCBTTTBCHHHHHHHHHHHHHTCSSCCSEEEEESCCBSSCC------HH----HHHHHHHHHTTC-
T ss_pred EEEEEecCCcCCCCcccccccCHHHHHHHHHHHHHhcCCCCCEEEECCCCCCCCC------HH----HHHHHHHHHHhc-
Confidence 588999999986 24467788888776653235899999999986421 12 234555566543
Q ss_pred CCCCceeEEEecCCCCCC
Q 009713 357 RLKEHSRFLFIPGPDDAG 374 (528)
Q Consensus 357 ~l~~~~~~v~VPG~~Dp~ 374 (528)
..++++||||||..
T Consensus 71 ----~~p~~~v~GNHD~~ 84 (274)
T 3d03_A 71 ----NYPLYLIPGNHDDK 84 (274)
T ss_dssp ----SSCEEEECCTTSCH
T ss_pred ----CCCEEEECCCCCCH
Confidence 36799999999973
No 24
>1ii7_A MRE11 nuclease; RAD50, DNA double-strand break repair, DAMP, manganese, replication; HET: DA; 2.20A {Pyrococcus furiosus} SCOP: d.159.1.4 PDB: 3dsc_A* 3dsd_A* 1s8e_A
Probab=96.95 E-value=0.0023 Score=64.98 Aligned_cols=78 Identities=18% Similarity=0.176 Sum_probs=48.1
Q ss_pred eEEEEeCCccCcHh---------HHHHHHHHHhcccCCCCCCeEEEEEccCCCCCCCCCCcchhHHHHHHHHHHHHHHcC
Q 009713 285 MFVILSDIWLDNEE---------VMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAH 355 (528)
Q Consensus 285 ~~v~lSdv~ld~~~---------~le~L~~ll~~~~~~~~~P~~~Vl~G~F~s~~~~~~~~~~~~~~~~f~~la~~l~~~ 355 (528)
+|+.+||+|++... ..+.|.++++.... ..|+++|++||+.+.... +...+....+.|.. |.+
T Consensus 2 kilh~sD~Hlg~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~D~vl~~GDl~d~~~~----~~~~~~~~~~~l~~-l~~- 73 (333)
T 1ii7_A 2 KFAHLADIHLGYEQFHKPQREEEFAEAFKNALEIAVQ--ENVDFILIAGDLFHSSRP----SPGTLKKAIALLQI-PKE- 73 (333)
T ss_dssp EEEEECCCCBTCCGGGCHHHHHHHHHHHHHHHHHHHH--TTCSEEEEESCSBSSSSC----CHHHHHHHHHHHHH-HHT-
T ss_pred EEEEEcccCCCCcccCCchhhHHHHHHHHHHHHHHHh--cCCCEEEECCCcCCCCCC----CHHHHHHHHHHHHH-HHH-
Confidence 57889999998632 22455666654443 379999999999986421 11222222222221 221
Q ss_pred CCCCCceeEEEecCCCCCC
Q 009713 356 PRLKEHSRFLFIPGPDDAG 374 (528)
Q Consensus 356 p~l~~~~~~v~VPG~~Dp~ 374 (528)
..+++++||||||..
T Consensus 74 ----~~~~v~~v~GNHD~~ 88 (333)
T 1ii7_A 74 ----HSIPVFAIEGNHDRT 88 (333)
T ss_dssp ----TTCCEEEECCTTTCC
T ss_pred ----CCCcEEEeCCcCCCc
Confidence 246899999999986
No 25
>1g5b_A Serine/threonine protein phosphatase; bacteriophage lambda, Ser/Thr protein phosphatase, ppase, manganese, sulfate, viral protein; 2.15A {Enterobacteria phage lambda} SCOP: d.159.1.3
Probab=96.94 E-value=0.00036 Score=66.62 Aligned_cols=40 Identities=10% Similarity=0.274 Sum_probs=31.7
Q ss_pred CCcEEEecCCCCcceEEeCCeEEEcCCCCCC-CcEEEEEEC
Q 009713 479 TPHAIVLADKSEQKAFKYTGITCFNPGSFSS-DSTFVAYRP 518 (528)
Q Consensus 479 ~Pdvlil~d~~~~f~~~y~gc~~vNpGsf~~-~~sf~~y~p 518 (528)
-++++|.||.+.+.....+++.+||||+... ..+.+.++.
T Consensus 178 ~~~~vv~GHth~~~~~~~~~~~~in~Gs~~gg~lt~~~l~~ 218 (221)
T 1g5b_A 178 GADTFIFGHTPAVKPLKFANQMYIDTGAVFCGNLTLIQVQG 218 (221)
T ss_dssp TSSEEEECSSCCSSCEEETTEEECCCCHHHHSCCCEEEEEC
T ss_pred CCCEEEECCCCCccceeeCCEEEEECCCCcCCceEEEEecC
Confidence 3588999999988888889999999999853 346666654
No 26
>2qjc_A Diadenosine tetraphosphatase, putative; putative diadenosine tetraphosphatase, monomer, PSI- 2, protein structure initiative, nysgrc; 2.05A {Trypanosoma brucei}
Probab=96.86 E-value=0.00035 Score=68.92 Aligned_cols=44 Identities=7% Similarity=-0.014 Sum_probs=31.4
Q ss_pred CCcEEEecCCCCcceEEeC--CeEEEcCCCCCCCcEEEEEECCCCeE
Q 009713 479 TPHAIVLADKSEQKAFKYT--GITCFNPGSFSSDSTFVAYRPCTQEV 523 (528)
Q Consensus 479 ~Pdvlil~d~~~~f~~~y~--gc~~vNpGsf~~~~sf~~y~p~~~~~ 523 (528)
-++++|.|+.+......++ ++.+||||+.. +|....+...++++
T Consensus 196 g~~~vvfGHt~~~~~~~~~~~~~i~IDtG~~~-gG~Lt~l~l~~~~~ 241 (262)
T 2qjc_A 196 GPETVVFGHDARRGLQEQYKPLAIGLDSRCVY-GGRLSAAVFPGGCI 241 (262)
T ss_dssp CSSEEEECCCGGGCCBCTTTTTEEECCCBGGG-TSEEEEEEETTTEE
T ss_pred CCCEEEECCCccccccccCCCCEEEeeCcccc-CCeeEEEEEcCCcE
Confidence 4689999999876666677 89999999985 45554444444443
No 27
>2nxf_A Putative dimetal phosphatase; dinuclear metal center phosphatase, metalloprotein, metallophosphoesterase, protein structure initiative; 1.70A {Danio rerio} SCOP: d.159.1.12
Probab=96.85 E-value=0.0006 Score=67.45 Aligned_cols=81 Identities=9% Similarity=0.005 Sum_probs=54.8
Q ss_pred CCeEEEEeCCccCcH---------------hHHHHHHHHHhcccCCCCCCeEEEEEccCCCCCCCCCCcchhHHHHHHHH
Q 009713 283 NDMFVILSDIWLDNE---------------EVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGK 347 (528)
Q Consensus 283 ~~~~v~lSdv~ld~~---------------~~le~L~~ll~~~~~~~~~P~~~Vl~G~F~s~~~~~~~~~~~~~~~~f~~ 347 (528)
..+|+++||+|++.. ..++.|+.+++.+.. ..|+.+|++||+++...... ....+.|+.
T Consensus 5 ~~~i~~isD~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~d~vi~~GD~~~~~~~~~----~~~~~~~~~ 78 (322)
T 2nxf_A 5 VFTFGLIADVQYADIEDGENYLRTRRRYYRGSADLLRDAVLQWRR--ERVQCVVQLGDIIDGHNRRR----DASDRALDT 78 (322)
T ss_dssp SEEEEEECCCCBCSSCCEECTTSSSEECTTHHHHHHHHHHHHHHH--TTCSEEEECSCCBCTHHHHT----TCHHHHHHH
T ss_pred ceEEEEEeeccccccCcccccccchHHHHHHHHHHHHHHHHHHHh--cCCCEEEECCCccCCCCCcc----hHHHHHHHH
Confidence 457899999999873 234667777776654 37999999999997521100 011344555
Q ss_pred HHHHHHcCCCCCCceeEEEecCCCCCC
Q 009713 348 LGQMIAAHPRLKEHSRFLFIPGPDDAG 374 (528)
Q Consensus 348 la~~l~~~p~l~~~~~~v~VPG~~Dp~ 374 (528)
+.+.+.++ ..++++||||||..
T Consensus 79 ~~~~l~~~-----~~p~~~v~GNHD~~ 100 (322)
T 2nxf_A 79 VMAELDAC-----SVDVHHVWGNHEFY 100 (322)
T ss_dssp HHHHHHTT-----CSEEEECCCHHHHH
T ss_pred HHHHHHhc-----CCcEEEecCCCCcc
Confidence 66666543 36899999999983
No 28
>2xmo_A LMO2642 protein; phosphodiesterase, hydrolase; 1.70A {Listeria monocytogenes}
Probab=96.54 E-value=0.0057 Score=64.20 Aligned_cols=79 Identities=15% Similarity=0.227 Sum_probs=50.1
Q ss_pred CCeEEEEeCCccCcHh----------------------HHHHHHHHHhcccCCCCCCeEEEEEccCCCCCCCCCCcchhH
Q 009713 283 NDMFVILSDIWLDNEE----------------------VMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSS 340 (528)
Q Consensus 283 ~~~~v~lSdv~ld~~~----------------------~le~L~~ll~~~~~~~~~P~~~Vl~G~F~s~~~~~~~~~~~~ 340 (528)
..+|+++||+|++.+. ..+.|+.+++..... .|+.+|++||+++... ...
T Consensus 39 ~~~i~~iSD~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~d~vi~~GDl~~~~~------~~~ 110 (443)
T 2xmo_A 39 NLSMVVTTDVHYFAPSLTDNGKAFEKYVAAGDGKQLAYSDEITDAFLADVESK--KTDVLIISGDLTNNGE------KTS 110 (443)
T ss_dssp CEEEEEECCCCBCCGGGBCCCHHHHHHHHTSTTCCGGGHHHHHHHHHHHHHHH--TCSEEEEESCCBSSCC------HHH
T ss_pred CeEEEEEeCCCCCCccccccchhhhcccccccccccccHHHHHHHHHHHHHHc--CCCEEEECCCCCCCCC------HHH
Confidence 3578999999997542 245667776655432 6899999999987421 122
Q ss_pred HHHHHHHHHHHHHcCCCCCCceeEEEecCCCCCCC
Q 009713 341 LRLQFGKLGQMIAAHPRLKEHSRFLFIPGPDDAGP 375 (528)
Q Consensus 341 ~~~~f~~la~~l~~~p~l~~~~~~v~VPG~~Dp~~ 375 (528)
+.. +.+.|.++.. ...++++||||||...
T Consensus 111 ~~~----~~~~l~~l~~--~~~~~~~v~GNHD~~~ 139 (443)
T 2xmo_A 111 HEE----LAKKLTQVEK--NGTQVFVVPGNHDINN 139 (443)
T ss_dssp HHH----HHHHHHHHHH--TTCEEEEECCTTTSSC
T ss_pred HHH----HHHHHHHHHh--CCCeEEEECCcCCCCC
Confidence 332 2222222100 1468999999999853
No 29
>3rl5_A Metallophosphoesterase mpped2; alpha-beta fold, metallophosphodiesterase, active site mutan nucleotide polymorphism, hydrolase; 1.26A {Rattus norvegicus} PDB: 3rl3_A* 3rl4_A*
Probab=94.67 E-value=0.064 Score=53.77 Aligned_cols=65 Identities=17% Similarity=0.248 Sum_probs=43.5
Q ss_pred CeEEEEeCCccCcHhHHHHHHHHHhcccCCCCCCeEEEEEccCCCCCCCCCCcchhHHHHHHHHHHHHHHcCCCCCCcee
Q 009713 284 DMFVILSDIWLDNEEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHSR 363 (528)
Q Consensus 284 ~~~v~lSdv~ld~~~~le~L~~ll~~~~~~~~~P~~~Vl~G~F~s~~~~~~~~~~~~~~~~f~~la~~l~~~p~l~~~~~ 363 (528)
-+|+++||+|...... .. ..++++|++||+++.. ...++ +.+.+.|++.+ ...
T Consensus 60 mri~~iSD~H~~~~~l------------~i-~~~D~vi~aGDl~~~g------~~~e~----~~~~~~L~~l~----~~~ 112 (296)
T 3rl5_A 60 TRFVCISDTRSRTDGI------------QM-PYGDILLHTGDFTELG------LPSEV----KKFNDWLGNLP----YEY 112 (296)
T ss_dssp EEEEEEBCCTTCCTTC------------CC-CSCSEEEECSCCSSSC------CHHHH----HHHHHHHHTSC----CSE
T ss_pred eEEEEEeeCCCCcchh------------cc-CCCCEEEECCcccCCC------CHHHH----HHHHHHHHhCC----CCe
Confidence 4789999999775421 11 2589999999998742 12333 34445555443 246
Q ss_pred EEEecCCCCCCC
Q 009713 364 FLFIPGPDDAGP 375 (528)
Q Consensus 364 ~v~VPG~~Dp~~ 375 (528)
+++|+||||.+.
T Consensus 113 v~~V~GNHD~~~ 124 (296)
T 3rl5_A 113 KIVIAGNHELTF 124 (296)
T ss_dssp EEECCCTTCGGG
T ss_pred EEEEcCCccccc
Confidence 899999999863
No 30
>1ute_A Protein (II purple acid phosphatase); tartrate resistant acid phosphatase metalloenzyme, uteroferrin, hydrolase; HET: NAG; 1.55A {Sus scrofa} SCOP: d.159.1.1 PDB: 1war_A* 2bq8_X 1qfc_A* 1qhw_A*
Probab=94.60 E-value=0.049 Score=53.30 Aligned_cols=81 Identities=11% Similarity=0.095 Sum_probs=46.1
Q ss_pred CCeEEEEeCCccCcH---------hHHHHHHHHHhcccCCCCCCeEEEEEccCCCCCCCCCCcchhHHHHHHHHHHHHHH
Q 009713 283 NDMFVILSDIWLDNE---------EVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIA 353 (528)
Q Consensus 283 ~~~~v~lSdv~ld~~---------~~le~L~~ll~~~~~~~~~P~~~Vl~G~F~s~~~~~~~~~~~~~~~~f~~la~~l~ 353 (528)
..+|+++||+|++.. .+.+.|.+++.. ..|+.+|++||++......... ...+.+.|+ .++.
T Consensus 6 ~~~~~~isD~h~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~d~vv~~GD~~~~~g~~~~~-~~~~~~~~~---~~~~ 76 (313)
T 1ute_A 6 ILRFVAVGDWGGVPNAPFHTAREMANAKAIATTVKT-----LGADFILSLGDNFYFTGVHDAK-DKRFQETFE---DVFS 76 (313)
T ss_dssp CEEEEEECSCCCCSSTTSSCHHHHHHHHHHHHHHHH-----HCCSEEEECSCCSTTTCCSSTT-CTHHHHHTT---TTSC
T ss_pred ceEEEEEcccCCCCCccccCchHHHHHHHHHHHHHh-----cCCCEEEECCCccCcCCCCCcc-hHHHHHHHH---HHcC
Confidence 357899999999752 223334443332 2699999999987542211111 122333222 2221
Q ss_pred cCCCCCCceeEEEecCCCCCC
Q 009713 354 AHPRLKEHSRFLFIPGPDDAG 374 (528)
Q Consensus 354 ~~p~l~~~~~~v~VPG~~Dp~ 374 (528)
. +.+ +...+++||||||-.
T Consensus 77 ~-~~l-~~~p~~~v~GNHD~~ 95 (313)
T 1ute_A 77 D-PSL-RNVPWHVLAGNHDHL 95 (313)
T ss_dssp S-GGG-TTCCEEECCCHHHHH
T ss_pred c-hhh-cCCCEEEECCCCccC
Confidence 1 111 257999999999975
No 31
>1sr3_A APO-CCME; OB fold, beta barrel, flexible C-terminal domain, chaperone; NMR {Escherichia coli} SCOP: b.40.9.1
Probab=94.42 E-value=0.11 Score=45.85 Aligned_cols=62 Identities=23% Similarity=0.268 Sum_probs=50.0
Q ss_pred CcE-EEEEEEEEc-----CCC---cEEEEeCCcEEEEEeccccccceeeccCeEEEEEEEEeeCCeEEEEEec
Q 009713 178 GRR-WVMGVISQL-----EDG---HFYLEDLAASVEIDLSKAKITTGFFTENTIVVAEGEMLVDGIFQVITCG 241 (528)
Q Consensus 178 g~~-~vlGml~~~-----~~g---~~~LED~sg~V~Ldls~~~~~~g~f~~G~vV~veG~~~~~g~F~V~~i~ 241 (528)
|+. .|-|||... .++ .|.|.|....|++..+...+ -+|-+|+=|+|+|.+..+|.|++++|.
T Consensus 28 g~~iRvgG~V~~GSv~r~~~~~~v~F~vtD~~~~v~V~Y~GilP--DlFrEGqgVVa~G~l~~~g~F~A~eVL 98 (136)
T 1sr3_A 28 GQRLRVGGMVMPGSVQRDPNSLKVTFTIYDAEGSVDVSYEGILP--DLFREGQGVVVQGELEKGNHILAKEVL 98 (136)
T ss_dssp TSEEEEEEEECTTTCEECSSSSEEEEEEECSSCEEEEEEESCCC--TTCCTTSEEEEEEEECSSSEEEESSCB
T ss_pred CCEEEEeeEEeCCcEEEcCCCCEEEEEEEeCCcEEEEEECCCCC--ccccCCCeEEEEEEECCCCeEEEEEEE
Confidence 445 699999732 233 37899999999998877654 588999999999999768999999994
No 32
>1j6q_A Cytochrome C maturation protein E; all-beta protein, heme delivery,cytochrome C maturation, OB- (oligonucleotide binding)fold; NMR {Shewanella putrefaciens} SCOP: b.40.9.1 PDB: 1lm0_A
Probab=94.02 E-value=0.25 Score=43.66 Aligned_cols=62 Identities=23% Similarity=0.342 Sum_probs=49.3
Q ss_pred CcE-EEEEEEEE-----cCCC---cEEEEe-CCcEEEEEeccccccceeeccCeEEEEEEEEeeCCeEEEEEec
Q 009713 178 GRR-WVMGVISQ-----LEDG---HFYLED-LAASVEIDLSKAKITTGFFTENTIVVAEGEMLVDGIFQVITCG 241 (528)
Q Consensus 178 g~~-~vlGml~~-----~~~g---~~~LED-~sg~V~Ldls~~~~~~g~f~~G~vV~veG~~~~~g~F~V~~i~ 241 (528)
|+. .|-|||.. ..++ +|.|.| ....|++......+ -+|.+|+=|+|+|.+..+|.|++++|.
T Consensus 32 g~~iRvgG~V~~GSv~r~~~~~~v~F~vtD~~~~~v~V~Y~GilP--DlFrEGqgVVa~G~l~~~g~F~A~eVL 103 (136)
T 1j6q_A 32 GQRIRVGGMVTVGSMVRDPNSLHVQFAVHDSLGGEILVTYDDLLP--DLFREGQGIVAQGVLGEDGKLAATEVL 103 (136)
T ss_dssp TCEEEEEEEECTTCCEECTTSSCEEEEEECTTCCCEEEEECSCCT--TSCCSSSEEEEEEEECSTTSEEEEEEE
T ss_pred CCEEEEeEEEeCCcEEecCCCCEEEEEEEcCCCCEEEEEECCCCC--ccccCCCeEEEEEEECCCCeEEEEEEE
Confidence 445 69999953 2233 478999 77799998887654 588999999999999768999999994
No 33
>2kct_A Cytochrome C-type biogenesis protein CCME; solution structure, heme chaperone, cytochrome C biogenesis, OB-fold domain, NESG, PSI-2; NMR {Desulfovibrio vulgaris str}
Probab=93.83 E-value=0.14 Score=42.40 Aligned_cols=60 Identities=22% Similarity=0.258 Sum_probs=48.0
Q ss_pred EEEEEEEEEc-----CCC---cEEEEeC---CcEEEEEeccccccceeeccCeEEEEEEEEee-CCeEEEEEec
Q 009713 180 RWVMGVISQL-----EDG---HFYLEDL---AASVEIDLSKAKITTGFFTENTIVVAEGEMLV-DGIFQVITCG 241 (528)
Q Consensus 180 ~~vlGml~~~-----~~g---~~~LED~---sg~V~Ldls~~~~~~g~f~~G~vV~veG~~~~-~g~F~V~~i~ 241 (528)
.-|-||+... ++| +|.|.|. ...|++..+...+ -+|.+|+=|+++|.+.. +|.|.+++|.
T Consensus 11 iRvgG~V~~GSv~r~~~~~~v~F~vtD~~~~~~~v~V~Y~GilP--DlFrEGqgVV~~G~l~~~~g~F~A~evL 82 (94)
T 2kct_A 11 VRLFGTVAADGLTMLDGAPGVRFRLEDKDNTSKTVWVLYKGAVP--DTFKPGVEVIIEGGLAPGEDTFKARTLM 82 (94)
T ss_dssp EEEEEEECSTTCEECTTSSEEEEEEECSSCTTCEEEEEEESCCC--TTCCTTCEEEEEEEECTTCSEEEEEEEE
T ss_pred EEEeeEEeCCeEEecCCCCEEEEEEEcCCCCCcEEEEEECCCCC--ccccCCCeEEEEEEEeCCCCEEEEeEEE
Confidence 3699998532 234 4789998 7899998887654 47899999999999976 7999999984
No 34
>2ie4_C PP2A-alpha;, serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform; protein-protein complex, heat repeat, signaling protein; HET: OKA; 2.60A {Homo sapiens} SCOP: d.159.1.3 PDB: 2npp_C* 3dw8_C* 3k7v_C* 3k7w_C* 3c5w_C 2ie3_C* 3fga_C* 2iae_C* 3p71_C* 2nym_C* 2nyl_C*
Probab=92.83 E-value=0.21 Score=50.31 Aligned_cols=73 Identities=12% Similarity=0.153 Sum_probs=46.9
Q ss_pred CCeEEEEeCCccCcHhHHHHHHHHHhcccCCCCCCeEEEEEccCCCCCCCCCCcchhHHHHHHHHHHHHHHcCCCCCCce
Q 009713 283 NDMFVILSDIWLDNEEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHS 362 (528)
Q Consensus 283 ~~~~v~lSdv~ld~~~~le~L~~ll~~~~~~~~~P~~~Vl~G~F~s~~~~~~~~~~~~~~~~f~~la~~l~~~p~l~~~~ 362 (528)
+..++++||+| ++- ..|..+|..... .++..+|++||+++.. ..+. +.++-|..+-..+|.
T Consensus 49 ~~~i~viGDIH-G~~---~~L~~ll~~~~~--~~~~~~vflGD~VDRG----~~s~----evl~lL~~lk~~~p~----- 109 (309)
T 2ie4_C 49 RCPVTVCGDVH-GQF---HDLMELFRIGGK--SPDTNYLFMGDYVDRG----YYSV----ETVTLLVALKVRYRE----- 109 (309)
T ss_dssp CSSEEEECCCT-TCH---HHHHHHHHHHCC--TTTSCEEECSCCSSSS----TTHH----HHHHHHHHHHHHCTT-----
T ss_pred cCCEEEEecCC-CCH---HHHHHHHHHcCC--CCCCEEEEeCCccCCC----CChH----HHHHHHHHHHhhCCC-----
Confidence 45788999999 543 456666664432 2456789999999862 1222 233334333334553
Q ss_pred eEEEecCCCCCC
Q 009713 363 RFLFIPGPDDAG 374 (528)
Q Consensus 363 ~~v~VPG~~Dp~ 374 (528)
.++++.||||-.
T Consensus 110 ~v~~lrGNHE~~ 121 (309)
T 2ie4_C 110 RITILRGNHESR 121 (309)
T ss_dssp TEEECCCTTSST
T ss_pred cEEEEeCCCCHH
Confidence 799999999975
No 35
>2dfj_A Diadenosinetetraphosphatase; helices and strands mixture, hydrolase; 2.72A {Shigella flexneri 2A}
Probab=92.35 E-value=0.12 Score=51.13 Aligned_cols=67 Identities=12% Similarity=0.110 Sum_probs=43.2
Q ss_pred eEEEEeCCccCcHhHHHHHHHHHhcccCCCCCCeEEEEEccCCCCCCCCCCcchhHHHHHHHHHHHHHHcCCCCCCceeE
Q 009713 285 MFVILSDIWLDNEEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHSRF 364 (528)
Q Consensus 285 ~~v~lSdv~ld~~~~le~L~~ll~~~~~~~~~P~~~Vl~G~F~s~~~~~~~~~~~~~~~~f~~la~~l~~~p~l~~~~~~ 364 (528)
+++++||+|- + ++.|..+|...... ..++.+|++||+++.- ..+. +.++ +|.+.+ ..+
T Consensus 2 ~i~vigDiHG-~---~~~l~~ll~~~~~~-~~~d~~v~lGD~vdrG----~~s~----~~l~----~l~~l~-----~~~ 59 (280)
T 2dfj_A 2 ATYLIGDVHG-C---YDELIALLHKVEFT-PGKDTLWLTGDLVARG----PGSL----DVLR----YVKSLG-----DSV 59 (280)
T ss_dssp CEEEECCCCS-C---HHHHHHHHHHTTCC-TTTCEEEECSCCSSSS----SCHH----HHHH----HHHHTG-----GGE
T ss_pred eEEEEecCCC-C---HHHHHHHHHHhCCC-CCCCEEEEeCCcCCCC----CccH----HHHH----HHHhCC-----Cce
Confidence 3778999994 3 45677777765431 2478999999999852 1121 1222 233322 279
Q ss_pred EEecCCCCC
Q 009713 365 LFIPGPDDA 373 (528)
Q Consensus 365 v~VPG~~Dp 373 (528)
++|.||||-
T Consensus 60 ~~v~GNHe~ 68 (280)
T 2dfj_A 60 RLVLGNHDL 68 (280)
T ss_dssp EECCCHHHH
T ss_pred EEEECCCcH
Confidence 999999996
No 36
>1fjm_A Protein serine/threonine phosphatase-1 (alpha ISO 1); hydrolase, toxin, hydrolase-hydrolase inhibitor complex; HET: 1ZN; 2.10A {Oryctolagus cuniculus} SCOP: d.159.1.3
Probab=90.47 E-value=0.45 Score=48.31 Aligned_cols=73 Identities=16% Similarity=0.222 Sum_probs=45.8
Q ss_pred CCeEEEEeCCccCcHhHHHHHHHHHhcccCCCCCCeEEEEEccCCCCCCCCCCcchhHHHHHHHHHHHHHHcCCCCCCce
Q 009713 283 NDMFVILSDIWLDNEEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHS 362 (528)
Q Consensus 283 ~~~~v~lSdv~ld~~~~le~L~~ll~~~~~~~~~P~~~Vl~G~F~s~~~~~~~~~~~~~~~~f~~la~~l~~~p~l~~~~ 362 (528)
+..++++||+| ++ +..|..+|..... .+...+|++||+++.- ..+.+ .++-|..+-..+| .
T Consensus 56 ~~~i~viGDIH-G~---~~~L~~ll~~~g~--~~~~~~vflGD~VDRG----~~s~e----vl~lL~~lk~~~p-----~ 116 (330)
T 1fjm_A 56 EAPLKICGDIH-GQ---YYDLLRLFEYGGF--PPESNYLFLGDYVDRG----KQSLE----TICLLLAYKIKYP-----E 116 (330)
T ss_dssp CSSEEEECBCT-TC---HHHHHHHHHHHCS--TTSSCEEECSCCSSSS----SCHHH----HHHHHHHHHHHST-----T
T ss_pred cCceEEecCCC-CC---HHHHHHHHHHhCC--CCcceEEeCCCcCCCC----CChHH----HHHHHHHhhhhcC-----C
Confidence 45788999999 44 3556667765432 1456799999999962 12222 2333332222344 3
Q ss_pred eEEEecCCCCCC
Q 009713 363 RFLFIPGPDDAG 374 (528)
Q Consensus 363 ~~v~VPG~~Dp~ 374 (528)
.++++-||||-.
T Consensus 117 ~v~~lrGNHE~~ 128 (330)
T 1fjm_A 117 NFFLLRGNHECA 128 (330)
T ss_dssp TEEECCCTTSSH
T ss_pred ceEEecCCchHh
Confidence 789999999973
No 37
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=90.31 E-value=0.55 Score=49.61 Aligned_cols=71 Identities=14% Similarity=0.190 Sum_probs=44.0
Q ss_pred eEEEEeCCccCcHhHHHHHHHHHhcccCCCCCCeEEEEEccCCCCCCCCCCcchhHHHHHHHHHHHHHHcCCCCCCceeE
Q 009713 285 MFVILSDIWLDNEEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHSRF 364 (528)
Q Consensus 285 ~~v~lSdv~ld~~~~le~L~~ll~~~~~~~~~P~~~Vl~G~F~s~~~~~~~~~~~~~~~~f~~la~~l~~~p~l~~~~~~ 364 (528)
+++++||+| ++ +..|..+|...... .....+|++||+++... .+.+ .++.|..+-..+| ..+
T Consensus 214 ~~~vigDiH-G~---~~~l~~~l~~~~~~-~~~~~~v~lGD~vdrG~----~s~e----~~~~l~~l~~~~~-----~~~ 275 (477)
T 1wao_1 214 KITVCGDTH-GQ---FYDLLNIFELNGLP-SETNPYIFNGDFVDRGS----FSVE----VILTLFGFKLLYP-----DHF 275 (477)
T ss_dssp EEEEECBCT-TC---HHHHHHHHHHHCCC-BTTBCEEEESCCSSSST----THHH----HHHHHHHHHHHST-----TTE
T ss_pred ceEEEeCCC-CC---HHHHHHHHHHcCCC-CCcCeEEEeccccCCCc----chHH----HHHHHHHHHhhCC-----Cce
Confidence 488999999 43 45666777654321 11246999999998621 2222 3333333323344 379
Q ss_pred EEecCCCCC
Q 009713 365 LFIPGPDDA 373 (528)
Q Consensus 365 v~VPG~~Dp 373 (528)
+++.||||.
T Consensus 276 ~~lrGNHE~ 284 (477)
T 1wao_1 276 HLLRGNHET 284 (477)
T ss_dssp EEECCTTSS
T ss_pred EeecCCccH
Confidence 999999996
No 38
>3tgh_A Glideosome-associated protein 50; phosphatase fold, NOT A phosphatase, motor protein, structur protein, membrane protein; 1.70A {Plasmodium falciparum 3D7}
Probab=90.13 E-value=0.12 Score=52.84 Aligned_cols=81 Identities=11% Similarity=-0.022 Sum_probs=49.9
Q ss_pred CeEEEEeCCccCcHhHH---HHHHHHHhcccCCCCCCeEEEEEccCCCCCCCCCCcchhHHHHHHHHHHHHHHcCCCCCC
Q 009713 284 DMFVILSDIWLDNEEVM---GKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKE 360 (528)
Q Consensus 284 ~~~v~lSdv~ld~~~~l---e~L~~ll~~~~~~~~~P~~~Vl~G~F~s~~~~~~~~~~~~~~~~f~~la~~l~~~p~l~~ 360 (528)
.+|+++||.+.+...-. +.+.++.+ . ..|+.+|+.||.+.. ... ......+++.|+.+...+ +...
T Consensus 4 l~f~~igD~g~g~~~q~~va~~m~~~~~---~--~~pd~vl~~GD~~y~-G~~-~~~d~~~~~~f~~~~~~~----~~~~ 72 (342)
T 3tgh_A 4 LRFASLGDWGKDTKGQILNAKYFKQFIK---N--ERVTFIVSPGSNFID-GVK-GLNDPAWKNLYEDVYSEE----KGDM 72 (342)
T ss_dssp EEEEECCSCBSCCHHHHHHHHHHHHHHH---H--TTCCEEEECSCSBTT-CCC-STTCTHHHHHTTTTSCCG----GGTT
T ss_pred EEEEEEecCCCCCchHHHHHHHHHHHHh---h--cCCCEEEECCCcccC-CCC-cCccHHHHHHHHHHhhhh----hhhh
Confidence 47899999998765322 33333333 2 379999999998865 221 112245555555432211 0124
Q ss_pred ceeEEEecCCCCCCC
Q 009713 361 HSRFLFIPGPDDAGP 375 (528)
Q Consensus 361 ~~~~v~VPG~~Dp~~ 375 (528)
.+.+..||||||-..
T Consensus 73 ~~P~~~vlGNHD~~~ 87 (342)
T 3tgh_A 73 YMPFFTVLGTRDWTG 87 (342)
T ss_dssp CSEEEECCCHHHHTS
T ss_pred CCCEEEeCCCCccCC
Confidence 679999999999764
No 39
>2z72_A Protein-tyrosine-phosphatase; cold-active enzyme, psychrophIle, hydrolase; 1.10A {Shewanella SP} PDB: 1v73_A 2zbm_A
Probab=88.40 E-value=1 Score=45.62 Aligned_cols=75 Identities=13% Similarity=0.065 Sum_probs=44.6
Q ss_pred CCeEEEEeCCccCcHhHHHHHHHHHhccc--CCC----CCCeEEEEEccCCCCCCCCCCcchhHHHHHHHHHHHHH---H
Q 009713 283 NDMFVILSDIWLDNEEVMGKLEVVLDGFE--SVE----VVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMI---A 353 (528)
Q Consensus 283 ~~~~v~lSdv~ld~~~~le~L~~ll~~~~--~~~----~~P~~~Vl~G~F~s~~~~~~~~~~~~~~~~f~~la~~l---~ 353 (528)
..+++++||+| ++- ..|..+|.... ..+ ..+..+|++||+++.- ..+. +.++.|..+- .
T Consensus 70 ~~~i~vigDiH-G~~---~~l~~ll~~~~~~~~~~~~~~~~d~~v~lGD~vdrG----~~s~----evl~~l~~l~~~~~ 137 (342)
T 2z72_A 70 IKKVVALSDVH-GQY---DVLLTLLKKQKIIDSDGNWAFGEGHMVMTGDIFDRG----HQVN----EVLWFMYQLDQQAR 137 (342)
T ss_dssp CCEEEEECCCT-TCH---HHHHHHHHHTTSBCTTSCBCCTTCEEEECSCCSSSS----SCHH----HHHHHHHHHHHHHH
T ss_pred CCCEEEEECCC-CCH---HHHHHHHHhcCCCcccccccCCCCEEEEECCCcCCC----CCHH----HHHHHHHHHHHHHh
Confidence 35788999999 443 44556665422 110 1478999999999862 1222 2223232221 1
Q ss_pred cCCCCCCceeEEEecCCCCCC
Q 009713 354 AHPRLKEHSRFLFIPGPDDAG 374 (528)
Q Consensus 354 ~~p~l~~~~~~v~VPG~~Dp~ 374 (528)
.+| ..+++|.||||-.
T Consensus 138 ~~~-----~~v~~v~GNHE~~ 153 (342)
T 2z72_A 138 DAG-----GMVHLLMGNHEQM 153 (342)
T ss_dssp HTT-----CEEEECCCHHHHH
T ss_pred hCC-----CeEEEEecCCcHH
Confidence 334 4899999999973
No 40
>1xzw_A Purple acid phosphatase; hydrolase; HET: NAG FUC MAN; 2.50A {Ipomoea batatas} SCOP: b.1.12.1 d.159.1.1
Probab=88.13 E-value=0.34 Score=50.43 Aligned_cols=80 Identities=13% Similarity=0.142 Sum_probs=45.2
Q ss_pred CCeEEEEeCCccCcHhHHHHHHHHHhcccCCCCCCeEEEEEccCCCCCCCCCCcchhHHHHHHHHHHHHHHcCCCCCCce
Q 009713 283 NDMFVILSDIWLDNEEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHS 362 (528)
Q Consensus 283 ~~~~v~lSdv~ld~~~~le~L~~ll~~~~~~~~~P~~~Vl~G~F~s~~~~~~~~~~~~~~~~f~~la~~l~~~p~l~~~~ 362 (528)
..+|+++||.+.+.. ..+.++.+.+ ....|+.+|++||++...... ......+.+ |. +.++. +....
T Consensus 126 ~~~f~~~gD~~~~~~-~~~~l~~i~~----~~~~~D~vl~~GD~~y~~~~~-~~~~~~~~~-~~---~~l~~---l~~~~ 192 (426)
T 1xzw_A 126 PYVFGLIGDIGQTHD-SNTTLTHYEQ----NSAKGQAVLFMGDLSYSNRWP-NHDNNRWDT-WG---RFSER---SVAYQ 192 (426)
T ss_dssp CEEEEEECSCTTBHH-HHHHHHHHHH----CTTCCSEEEECSCCCCGGGSG-GGCTHHHHH-HH---HHHHH---HHTTS
T ss_pred CeEEEEEEeCCCCCc-hHHHHHHHHh----CCCCCCEEEeCCChhhcccCC-cccchHHHH-HH---HHHHH---HHhcC
Confidence 457999999987632 2233443332 112699999999998542110 011122222 22 22221 12356
Q ss_pred eEEEecCCCCCCC
Q 009713 363 RFLFIPGPDDAGP 375 (528)
Q Consensus 363 ~~v~VPG~~Dp~~ 375 (528)
.++.+|||||-..
T Consensus 193 P~~~v~GNHD~~~ 205 (426)
T 1xzw_A 193 PWIWTAGNHEIDY 205 (426)
T ss_dssp CEECCCCGGGCCC
T ss_pred CEEEecccccccc
Confidence 8999999999863
No 41
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=87.63 E-value=2.7 Score=35.33 Aligned_cols=63 Identities=17% Similarity=0.237 Sum_probs=44.5
Q ss_pred cceeecccccCCCCcE-EEEEEEEEc--------CCC---c---EEEEeCCcEEEEEeccccc-cceeeccCeEEEEEEE
Q 009713 165 CEISTIQSLVGQTGRR-WVMGVISQL--------EDG---H---FYLEDLAASVEIDLSKAKI-TTGFFTENTIVVAEGE 228 (528)
Q Consensus 165 ~~it~I~~Llg~~g~~-~vlGml~~~--------~~g---~---~~LED~sg~V~Ldls~~~~-~~g~f~~G~vV~veG~ 228 (528)
+.+++|+.|. .|+. .++|+|... ++| . +.|.|.||+|.+.+=+... ....+.+|.+|.+.|.
T Consensus 5 ~~~~~I~~L~--~g~~v~i~~~V~~~~~~~~~~~k~G~~~~~~~~~l~D~TG~I~~t~w~~~~~~~~~l~~G~vv~i~g~ 82 (115)
T 2k50_A 5 HRMDTISKLE--EGAETPVTGRVMKISSPRTFTTRKGREGKLANVIIADDTGELRAVFWTENIKLLKKFREGDVIRIKDV 82 (115)
T ss_dssp TCCCCTTTCC--TTCEEEEEEEEEEECCCEECCCTTSSCCEEEEEEEEETTEEEEEEEETTGGGGGGTCCTTSEEEEEEE
T ss_pred cceEEHHHCC--CCCEeEEEEEEEECCCceEEEcCCCCEEEEEEEEEEeCCCeEEEEEeCchhhhhhcCCCCCEEEEEee
Confidence 4677888883 4544 789998765 244 3 3689999999987543221 1235689999999999
Q ss_pred E
Q 009713 229 M 229 (528)
Q Consensus 229 ~ 229 (528)
.
T Consensus 83 ~ 83 (115)
T 2k50_A 83 N 83 (115)
T ss_dssp E
T ss_pred E
Confidence 8
No 42
>2qfp_A Purple acid phosphatase; binuclear, Fe-Zn, hydrolase; HET: NAG NDG; 2.20A {Phaseolus vulgaris} SCOP: b.1.12.1 d.159.1.1 PDB: 2qfr_A* 1kbp_A* 3kbp_A* 4kbp_A*
Probab=87.62 E-value=0.31 Score=50.73 Aligned_cols=79 Identities=11% Similarity=0.177 Sum_probs=44.8
Q ss_pred CCeEEEEeCCccCcHhHHHHHHHHHhcccCCCCCCeEEEEEccCCCCCCCCCCcchhHHHHHHHHHHHHHHcCCCCCCce
Q 009713 283 NDMFVILSDIWLDNEEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHS 362 (528)
Q Consensus 283 ~~~~v~lSdv~ld~~~~le~L~~ll~~~~~~~~~P~~~Vl~G~F~s~~~~~~~~~~~~~~~~f~~la~~l~~~p~l~~~~ 362 (528)
..+|+++||.|.+.. ..+.+ ..+......|+.+|++||++...... ......+. .|.++.+.+. ...
T Consensus 119 ~~~f~~igD~~~~~~-~~~~l----~~~~~~~~~~D~vl~~GDl~y~~~~~-~~~~~~~~-~~~~~l~~~~------~~~ 185 (424)
T 2qfp_A 119 PYTFGLIGDLGQSFD-SNTTL----SHYELSPKKGQTVLFVGDLSYADRYP-NHDNVRWD-TWGRFTERSV------AYQ 185 (424)
T ss_dssp CEEEEEECSCTTBHH-HHHHH----HHHHTCSSCCCEEEECSCCSCGGGSG-GGCTHHHH-HHHHHHHHHH------TTS
T ss_pred CeEEEEEEeCCCCCC-hHHHH----HHHHhCCCCCCEEEEcCccccccccc-cccchHHH-HHHHHHHHHH------hcC
Confidence 357999999998643 22223 33332212699999999999753211 11111222 2222222222 246
Q ss_pred eEEEecCCCCCC
Q 009713 363 RFLFIPGPDDAG 374 (528)
Q Consensus 363 ~~v~VPG~~Dp~ 374 (528)
.++.+|||||-.
T Consensus 186 P~~~v~GNHD~~ 197 (424)
T 2qfp_A 186 PWIWTAGNHEIE 197 (424)
T ss_dssp CEEECCCHHHHC
T ss_pred CeEeecCCcccc
Confidence 899999999975
No 43
>4gop_B Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=86.06 E-value=2.7 Score=36.63 Aligned_cols=60 Identities=12% Similarity=0.125 Sum_probs=41.5
Q ss_pred cEEEEEEEEEcCCC----cEEEEeCCcEEEEEeccccc-----cceeeccCeEEEEEEEEee-CCeEEEE
Q 009713 179 RRWVMGVISQLEDG----HFYLEDLAASVEIDLSKAKI-----TTGFFTENTIVVAEGEMLV-DGIFQVI 238 (528)
Q Consensus 179 ~~~vlGml~~~~~g----~~~LED~sg~V~Ldls~~~~-----~~g~f~~G~vV~veG~~~~-~g~F~V~ 238 (528)
++.++|+|....++ .|.|+|.||.|....=.... ....|.+|++|-|.|.... .|.-++.
T Consensus 38 ~V~iVG~V~~~~~~~~~~~~~ldD~TG~I~~~~W~~~~~~~~~~~~~~~~g~yVrV~G~v~~f~g~~qi~ 107 (136)
T 4gop_B 38 QLTFVAVVRNISRNATNVAYSVEDGTGQIEVRQWLDSSSDDSSKASEIRNNVYVRVLGTLKSFQNRRSIS 107 (136)
T ss_dssp EEEEEEEEEEEEECSSEEEEEEECSSCEEEEEEECC--------CCSCCTTCEEEEEEEEEEETTEEEEE
T ss_pred EEEEEEEEEEEEecCCeEEEEEECCCCCEEEEEecccCCcccccccccCCCCEEEEEEEEEEeCCEEEEE
Confidence 45899999987654 37899999998875422111 1346689999999999854 5654443
No 44
>3e7a_A PP-1A, serine/threonine-protein phosphatase PP1-alpha Ca subunit; carbohydrate metabolism, cell cycle, cell division; HET: 1ZN; 1.63A {Homo sapiens} SCOP: d.159.1.3 PDB: 3e7b_A* 3egg_A* 3egh_A* 3hvq_A 3v4y_A* 3n5u_A 1jk7_A* 1it6_A* 2bcd_A* 2bdx_A* 2o8g_A 2o8a_A 1u32_A* 1s70_A*
Probab=85.29 E-value=1.8 Score=43.18 Aligned_cols=73 Identities=16% Similarity=0.232 Sum_probs=45.8
Q ss_pred CCeEEEEeCCccCcHhHHHHHHHHHhcccCCCCCCeEEEEEccCCCCCCCCCCcchhHHHHHHHHHHHHHHcCCCCCCce
Q 009713 283 NDMFVILSDIWLDNEEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHS 362 (528)
Q Consensus 283 ~~~~v~lSdv~ld~~~~le~L~~ll~~~~~~~~~P~~~Vl~G~F~s~~~~~~~~~~~~~~~~f~~la~~l~~~p~l~~~~ 362 (528)
+..++++||+| ++ +..|.++|...... +...+|++||+++... .+.+. ++-|..+-..+|.
T Consensus 55 ~~~i~viGDIH-G~---~~~L~~ll~~~g~~--~~~~~vfLGD~VDrG~----~s~ev----l~lL~~lk~~~p~----- 115 (299)
T 3e7a_A 55 EAPLKICGDIH-GQ---YYDLLRLFEYGGFP--PESNYLFLGDYVDRGK----QSLET----ICLLLAYKIKYPE----- 115 (299)
T ss_dssp CSSEEEECBCT-TC---HHHHHHHHHHHCST--TSSCEEECSCCSSSSS----CHHHH----HHHHHHHHHHSTT-----
T ss_pred CCCEEEEecCC-CC---HHHHHHHHHHhCCC--CCccEEeCCcccCCCC----CcHHH----HHHHHHHHhhCCC-----
Confidence 45788999999 33 45566677654321 3467999999998621 22222 2333332234553
Q ss_pred eEEEecCCCCCC
Q 009713 363 RFLFIPGPDDAG 374 (528)
Q Consensus 363 ~~v~VPG~~Dp~ 374 (528)
+++++-||||-.
T Consensus 116 ~v~~lrGNHE~~ 127 (299)
T 3e7a_A 116 NFFLLRGNHECA 127 (299)
T ss_dssp TEEECCCTTSSH
T ss_pred cEEEEecCchhh
Confidence 699999999963
No 45
>3icf_A PPT, serine/threonine-protein phosphatase T; IRO metalloprotein, structural genomics, PSI-2, protein structu initiative; 2.30A {Saccharomyces cerevisiae}
Probab=85.27 E-value=1.8 Score=43.91 Aligned_cols=71 Identities=15% Similarity=0.228 Sum_probs=42.4
Q ss_pred eEEEEeCCccCcHhHHHHHHHHHhcccCCCCCCeEEEEEccCCCCCCCCCCcchhHHHHHHHHHHHHHHcCCCCCCceeE
Q 009713 285 MFVILSDIWLDNEEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHSRF 364 (528)
Q Consensus 285 ~~v~lSdv~ld~~~~le~L~~ll~~~~~~~~~P~~~Vl~G~F~s~~~~~~~~~~~~~~~~f~~la~~l~~~p~l~~~~~~ 364 (528)
+++++||+| ++ +..|..+|...... ..-..+|++||+++.-. .+.+. ++-|..+-..+|. ++
T Consensus 65 ri~viGDIH-G~---~~~L~~ll~~~g~~-~~~~~~vflGD~VDRG~----~s~ev----l~lL~~lk~~~p~-----~v 126 (335)
T 3icf_A 65 KISVCGDTH-GQ---FYDVLNLFRKFGKV-GPKHTYLFNGDFVDRGS----WSCEV----ALLFYCLKILHPN-----NF 126 (335)
T ss_dssp EEEEECCCT-TC---HHHHHHHHHHHCCC-BTTEEEEECSCCSSSST----THHHH----HHHHHHHHHHCTT-----TE
T ss_pred eEEEEecCC-CC---HHHHHHHHHHcCCC-CCCcEEEEeCCccCCCc----ChHHH----HHHHHHHhhhCCC-----cE
Confidence 488999999 33 34455666644321 01246999999998621 22222 2233332234453 68
Q ss_pred EEecCCCCC
Q 009713 365 LFIPGPDDA 373 (528)
Q Consensus 365 v~VPG~~Dp 373 (528)
+++=||||-
T Consensus 127 ~llrGNHE~ 135 (335)
T 3icf_A 127 FLNRGNHES 135 (335)
T ss_dssp EECCCTTSS
T ss_pred EEecCchhh
Confidence 999999996
No 46
>3h63_A Serine/threonine-protein phosphatase 5; metalloenzyme, inhibitors, drug design, cytoplasm, hydrolase, iron, manganese, metal-binding, nucleus; HET: NHC; 1.30A {Homo sapiens} SCOP: d.159.1.3 PDB: 3h60_A* 3h61_A* 3h62_C* 3h64_A* 3h66_A 3h67_A* 3h68_A* 3h69_A* 1s95_A
Probab=84.18 E-value=2.7 Score=42.27 Aligned_cols=73 Identities=14% Similarity=0.183 Sum_probs=43.8
Q ss_pred CeEEEEeCCccCcHhHHHHHHHHHhcccCCCCCCeEEEEEccCCCCCCCCCCcchhHHHHHHHHHHHHHHcCCCCCCcee
Q 009713 284 DMFVILSDIWLDNEEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHSR 363 (528)
Q Consensus 284 ~~~v~lSdv~ld~~~~le~L~~ll~~~~~~~~~P~~~Vl~G~F~s~~~~~~~~~~~~~~~~f~~la~~l~~~p~l~~~~~ 363 (528)
.+++++||+| ++ +..|.++|...... .....+|++||+++.- ..+.+. ++-|..+-..+|. +
T Consensus 60 ~ri~viGDIH-G~---~~~L~~ll~~~g~~-~~~~~~vflGD~VDRG----~~s~ev----l~lL~~lk~~~p~-----~ 121 (315)
T 3h63_A 60 EKITVCGDTH-GQ---FYDLLNIFELNGLP-SETNPYIFNGDFVDRG----SFSVEV----ILTLFGFKLLYPD-----H 121 (315)
T ss_dssp CEEEEECCCT-TC---HHHHHHHHHHHCCC-BTTBCEEEESCCSSSS----TTHHHH----HHHHHHHHHHSTT-----T
T ss_pred ceEEEEecCC-CC---HHHHHHHHHHhCCC-CCCCEEEEeCCccCCC----cChHHH----HHHHHHhhhhcCC-----c
Confidence 3588999999 43 45566666643321 1124599999999962 122222 2333332223453 7
Q ss_pred EEEecCCCCCC
Q 009713 364 FLFIPGPDDAG 374 (528)
Q Consensus 364 ~v~VPG~~Dp~ 374 (528)
++++-||||-.
T Consensus 122 v~~lrGNHE~~ 132 (315)
T 3h63_A 122 FHLLRGNHETD 132 (315)
T ss_dssp EEEECCTTSSH
T ss_pred EEEEecCcccc
Confidence 99999999963
No 47
>3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_A 1quq_A 1l1o_B
Probab=83.95 E-value=2.9 Score=36.28 Aligned_cols=59 Identities=14% Similarity=0.244 Sum_probs=40.2
Q ss_pred cEEEEEEEEEcCCC----cEEEEeCCc-EEEEEecccc----ccceeeccCeEEEEEEEEee-CCeEEE
Q 009713 179 RRWVMGVISQLEDG----HFYLEDLAA-SVEIDLSKAK----ITTGFFTENTIVVAEGEMLV-DGIFQV 237 (528)
Q Consensus 179 ~~~vlGml~~~~~g----~~~LED~sg-~V~Ldls~~~----~~~g~f~~G~vV~veG~~~~-~g~F~V 237 (528)
++.++|+|....++ .|.|+|.|| +|....=... .....|.+|++|-|.|.... +|.-++
T Consensus 33 ~V~iVG~V~~~~~~~~~~~~~ldD~TG~~I~~~~W~~~~~~~~~~~~~~~g~yVrV~G~l~~f~g~~qi 101 (132)
T 3kdf_D 33 QVTIVGIIRHAEKAPTNIVYKIDDMTAAPMDVRQWVDTDDTSSENTVVPPETYVKVAGHLRSFQNKKSL 101 (132)
T ss_dssp EEEEEEEEEEEEECSSEEEEEEECSSSSCEEEEEEC---------CCCCTTCEEEEEEEEEEETTEEEE
T ss_pred EEEEEEEEEEEEEcCCeEEEEEECCCCCEEEEEEEccCCCcccccccccCCCEEEEEEEEEeECCEEEE
Confidence 35899999876543 378999999 8988542111 11345679999999999854 565333
No 48
>1aui_A Calcineurin, serine/threonine phosphatase 2B; hydrolase, immunosuppression; 2.10A {Homo sapiens} SCOP: d.159.1.3
Probab=82.87 E-value=2 Score=45.97 Aligned_cols=73 Identities=12% Similarity=0.229 Sum_probs=44.0
Q ss_pred CCeEEEEeCCccCcHhHHHHHHHHHhcccCCCCCCeEEEEEccCCCCCCCCCCcchhHHHHHHHHHHHHHHcCCCCCCce
Q 009713 283 NDMFVILSDIWLDNEEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHS 362 (528)
Q Consensus 283 ~~~~v~lSdv~ld~~~~le~L~~ll~~~~~~~~~P~~~Vl~G~F~s~~~~~~~~~~~~~~~~f~~la~~l~~~p~l~~~~ 362 (528)
+..++++||+| ++- ..|..+|.. ... .....+|++||+++.-. .+.+. ++-|..+-..+|.
T Consensus 82 ~~pI~VIGDIH-Gq~---~dL~~LL~~-~g~-p~~d~yVFLGDyVDRGp----~S~Ev----l~lL~aLk~~~P~----- 142 (521)
T 1aui_A 82 DAPVTVCGDIH-GQF---FDLMKLFEV-GGS-PANTRYLFLGDYVDRGY----FSIEC----VLYLWALKILYPK----- 142 (521)
T ss_dssp CSSEEEECCCT-TCH---HHHHHHHHH-HCC-TTTCCEEECSCCSSSSS----CHHHH----HHHHHHHHHHSTT-----
T ss_pred ccceeeccCCC-CCH---HHHHHHHHh-cCC-CCcceEEEcCCcCCCCC----CHHHH----HHHHHHHhhhCCC-----
Confidence 45688999999 443 445555552 221 23578999999998621 22222 2223222223453
Q ss_pred eEEEecCCCCCC
Q 009713 363 RFLFIPGPDDAG 374 (528)
Q Consensus 363 ~~v~VPG~~Dp~ 374 (528)
.++++-||||-.
T Consensus 143 ~v~lLRGNHE~~ 154 (521)
T 1aui_A 143 TLFLLRGNHECR 154 (521)
T ss_dssp TEEECCCTTSSH
T ss_pred eEEEecCCccHH
Confidence 789999999963
No 49
>1nnx_A Protein YGIW; structural genomics, hypothetical protein, OB-fold, structure 2 function project, S2F, unknown function; 1.45A {Escherichia coli} SCOP: b.40.10.1
Probab=82.50 E-value=3.7 Score=34.73 Aligned_cols=66 Identities=17% Similarity=0.269 Sum_probs=50.0
Q ss_pred ceeecccccC-CCCcE-EEEEEEEEc-CCCcEEEEeCCcEEEEEeccccccceeeccCeEEEEEEEEee
Q 009713 166 EISTIQSLVG-QTGRR-WVMGVISQL-EDGHFYLEDLAASVEIDLSKAKITTGFFTENTIVVAEGEMLV 231 (528)
Q Consensus 166 ~it~I~~Llg-~~g~~-~vlGml~~~-~~g~~~LED~sg~V~Ldls~~~~~~g~f~~G~vV~veG~~~~ 231 (528)
.+++++..+. .+++. .+=|-|.+. .+.+|...|.||+|.++|.+.....--+.|+.-|-+.|++..
T Consensus 24 ~~~TV~~a~~~~Dd~~V~L~G~Iv~~~~~d~Y~F~D~TG~I~VeId~~~w~g~~v~p~~~Vri~GevDk 92 (109)
T 1nnx_A 24 SVTTVESAKSLRDDTWVTLRGNIVERISDDLYVFKDASGTINVDIDHKRWNGVTVTPKDTVEIQGEVDK 92 (109)
T ss_dssp CCCCHHHHTTSCSSEEEEEEEEEEEEEETTEEEEEETTEEEEEECCGGGSTTCCCCTTSCEEEEEEEEE
T ss_pred ceEeHHHHhhCcCCCeEEEEEEEEEEeCCCeEEEECCCccEEEEEChhhcCCcccCCCCEEEEEEEECC
Confidence 3456665543 44543 788999865 577899999999999999876654345589999999999964
No 50
>3mxn_B RECQ-mediated genome instability protein 2; bloom syndrome, helicase, RMI, topoisomerase, replication PR replication; 1.55A {Homo sapiens} PDB: 4day_B 3nbh_B
Probab=82.09 E-value=7.3 Score=34.48 Aligned_cols=52 Identities=13% Similarity=0.194 Sum_probs=41.5
Q ss_pred EEEEEEEEEcCCCcEEEEeCCcEEEEEeccccc-cceeeccCeEEEEEEEEee
Q 009713 180 RWVMGVISQLEDGHFYLEDLAASVEIDLSKAKI-TTGFFTENTIVVAEGEMLV 231 (528)
Q Consensus 180 ~~vlGml~~~~~g~~~LED~sg~V~Ldls~~~~-~~g~f~~G~vV~veG~~~~ 231 (528)
+++=|.|...+.|.+.|.|.||.+.+...+..+ +...+-+|+.|.|-|.+..
T Consensus 61 VWmQG~VV~~~~g~~~LdDgTG~~~v~g~~~vp~g~p~l~~G~YVMV~G~v~~ 113 (150)
T 3mxn_B 61 VWMQGRVVMADRGEARLRDPSGDFSVRGLERVPRGRPCLVPGKYVMVMGVVQA 113 (150)
T ss_dssp EEEEEEEEEEETTEEEEEETTEEEEEECGGGSCCCSCCCSTTCEEEEEEEEEE
T ss_pred EEEEeEEEEeCCCeEEEECCCceEEEeeccccCCCCcccCCCCEEEEEEEEEe
Confidence 588999999888999999999999986544333 2345679999999999864
No 51
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=81.88 E-value=7.3 Score=32.44 Aligned_cols=66 Identities=21% Similarity=0.316 Sum_probs=39.5
Q ss_pred eeecccccCCCCcEEEEEEEEE------cCCCc------EEEEeCCcEEEEEeccccccceeeccCeEEEEEEEEee--C
Q 009713 167 ISTIQSLVGQTGRRWVMGVISQ------LEDGH------FYLEDLAASVEIDLSKAKITTGFFTENTIVVAEGEMLV--D 232 (528)
Q Consensus 167 it~I~~Llg~~g~~~vlGml~~------~~~g~------~~LED~sg~V~Ldls~~~~~~g~f~~G~vV~veG~~~~--~ 232 (528)
.+.|+.|.-....+.+.|+|.. .++|+ ..|.|.||+|++.+=+.. +.+|++|-+++-+.. .
T Consensus 3 ~~kI~dl~pg~~~v~v~~~V~~~~~~~~~k~G~~~~v~~~~l~DeTG~I~~tlW~~~-----l~~Gdvv~i~ng~v~~~~ 77 (106)
T 2k75_A 3 LVKIRDVSLSTPYVSVIGKITGIHKKEYESDGTTKSVYQGYIEDDTARIRISSFGKQ-----LQDSDVVRIDNARVAQFN 77 (106)
T ss_dssp BCCSTTCCTTCSEEEEEEEEEEEEEEEEEETTEEEEEEEEEEECSSCEEEEEEESSC-----CCTTEEEEEEEEEEEEET
T ss_pred cEEHHHcCCCCceEEEEEEEEEccccccccCCCeeEEEEEEEEcCCCeEEEEEEcCc-----cCCCCEEEEEeeEEeEEC
Confidence 4556666321122345555532 23564 478999999999875432 789999999944321 4
Q ss_pred CeEEE
Q 009713 233 GIFQV 237 (528)
Q Consensus 233 g~F~V 237 (528)
|.+.+
T Consensus 78 g~~~L 82 (106)
T 2k75_A 78 GYLSL 82 (106)
T ss_dssp TEEEE
T ss_pred CEEEE
Confidence 55443
No 52
>3ll8_A Serine/threonine-protein phosphatase 2B catalytic alpha isoform; protein-peptide docking, protein targeting, AKA beta-augmentation, calmodulin-binding, membrane, hydrolase; 2.00A {Homo sapiens} PDB: 2p6b_A 1m63_A* 1tco_A* 1mf8_A* 2jog_A
Probab=80.76 E-value=3.4 Score=42.19 Aligned_cols=73 Identities=14% Similarity=0.231 Sum_probs=45.3
Q ss_pred CCeEEEEeCCccCcHhHHHHHHHHHhcccCCCCCCeEEEEEccCCCCCCCCCCcchhHHHHHHHHHHHHHHcCCCCCCce
Q 009713 283 NDMFVILSDIWLDNEEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHS 362 (528)
Q Consensus 283 ~~~~v~lSdv~ld~~~~le~L~~ll~~~~~~~~~P~~~Vl~G~F~s~~~~~~~~~~~~~~~~f~~la~~l~~~p~l~~~~ 362 (528)
+..++++||+| ++ +..|.++|..... .....+|++||+++... .+.+ .++-|..+-..+|.
T Consensus 69 ~~pi~ViGDIH-G~---~~dL~~ll~~~g~--~~~~~~vfLGD~VDRG~----~s~E----vl~lL~~lk~~~p~----- 129 (357)
T 3ll8_A 69 DAPVTVCGDIH-GQ---FFDLMKLFEVGGS--PANTRYLFLGDYVDRGY----FSIE----CVLYLWALKILYPK----- 129 (357)
T ss_dssp CSSEEEECCCT-TC---HHHHHHHHHHHCC--TTTCCEEECSCCSSSST----THHH----HHHHHHHHHHHCTT-----
T ss_pred cccceeeccCC-CC---HHHHHHHHHhcCC--CCCcEEEECCCccCCCc----ChHH----HHHHHHHhhhhcCC-----
Confidence 45788999999 33 3445556654322 24568999999998621 2222 23333333234553
Q ss_pred eEEEecCCCCCC
Q 009713 363 RFLFIPGPDDAG 374 (528)
Q Consensus 363 ~~v~VPG~~Dp~ 374 (528)
+++++-||||-.
T Consensus 130 ~v~llrGNHE~~ 141 (357)
T 3ll8_A 130 TLFLLRGNHECR 141 (357)
T ss_dssp TEEECCCTTSSH
T ss_pred cEEEEeCchhhh
Confidence 689999999973
No 53
>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii}
Probab=78.84 E-value=14 Score=30.59 Aligned_cols=64 Identities=17% Similarity=0.145 Sum_probs=42.0
Q ss_pred ceeecccccCCCCcEEEEEEEEEc--------CCC------cEEEEeCCcEEEEEeccccccceeeccCeEEEEEEEEee
Q 009713 166 EISTIQSLVGQTGRRWVMGVISQL--------EDG------HFYLEDLAASVEIDLSKAKITTGFFTENTIVVAEGEMLV 231 (528)
Q Consensus 166 ~it~I~~Llg~~g~~~vlGml~~~--------~~g------~~~LED~sg~V~Ldls~~~~~~g~f~~G~vV~veG~~~~ 231 (528)
.+++|+.|.-. ....|.|.|... .+| .+.|.|.||+|++.+=+..... .+.||++|.+.|....
T Consensus 4 ~~~~I~dL~~~-~~v~v~g~V~~~~~~r~~~~~~G~~~~v~~~~l~D~TG~IrvtlW~~~a~~-~l~~Gdvv~i~g~vk~ 81 (105)
T 3dm3_A 4 DTYNIGELSPG-MTATFEGEVISALPIKEFKRADGSIGKLKSFIVRDETGSIRVTLWDNLTDI-DVGRGDYVRVRGYIRE 81 (105)
T ss_dssp CEECGGGCCSS-EEEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEETTEEEEEEEEGGGGGS-CCCTTCEEEEEEEEEE
T ss_pred cceEHHHCCCC-CeEEEEEEEEECCCceEEEcCCCCeeEEEEEEEECCCCcEEEEEECccccc-ccCCCCEEEEEEEEEE
Confidence 46788888421 334688887642 244 2579999999999753221111 5689999999996543
No 54
>1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3
Probab=78.11 E-value=14 Score=31.10 Aligned_cols=60 Identities=17% Similarity=0.134 Sum_probs=38.9
Q ss_pred eecccccCCCCcEEEEEEEEEc--------CCCc-----EEEEeCCcEEEEEeccccccceeeccCeEEEEE-EEE
Q 009713 168 STIQSLVGQTGRRWVMGVISQL--------EDGH-----FYLEDLAASVEIDLSKAKITTGFFTENTIVVAE-GEM 229 (528)
Q Consensus 168 t~I~~Llg~~g~~~vlGml~~~--------~~g~-----~~LED~sg~V~Ldls~~~~~~g~f~~G~vV~ve-G~~ 229 (528)
++|+.|.-......++|+|... .+|+ +.|.|.||+|.+.+=+... ..|-+|.+|.++ |..
T Consensus 3 ~~I~dL~~~~~~v~~~~~V~~~~~~~~~~~k~G~~~~~~~~l~D~TG~I~~tlW~~~~--~~~~~G~vv~i~~g~v 76 (119)
T 1o7i_A 3 EKVGNLKPNMESVNVTVRVLEASEARQIQTKNGVRTISEAIVGDETGRVKLTLWGKHA--GSIKEGQVVKIENAWT 76 (119)
T ss_dssp CCGGGCCTTCSSEEEEEEEEEECCCEEECCTTCCEEEEEEEEEETTEEEEEEEEGGGT--TCCCTTCEEEEEEEEE
T ss_pred EEHHHCcCCCCcEEEEEEEEECCCCeeEEecCCCEEEEEEEEEeCCCEEEEEEECChh--hcCCCCCEEEEEeEEE
Confidence 4566663212235677777543 2453 3688999999997654322 346899999999 654
No 55
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A
Probab=75.33 E-value=14 Score=30.80 Aligned_cols=71 Identities=14% Similarity=0.120 Sum_probs=44.3
Q ss_pred eeecccccCCCCcEEEEEEEEEcC---CCc----EEEEeCCcEEEEEeccccccceeeccCeEEEEEEEEee--CCeEEE
Q 009713 167 ISTIQSLVGQTGRRWVMGVISQLE---DGH----FYLEDLAASVEIDLSKAKITTGFFTENTIVVAEGEMLV--DGIFQV 237 (528)
Q Consensus 167 it~I~~Llg~~g~~~vlGml~~~~---~g~----~~LED~sg~V~Ldls~~~~~~g~f~~G~vV~veG~~~~--~g~F~V 237 (528)
++.|+.|.-....+.+.|+|.... .|. ..|.|.||+|++.+=+.. ....+.+|++|-++|-+.. .|.+.+
T Consensus 5 ~~kI~dl~~~~~~v~v~~~V~~~~~~~~~~~~~~~~l~DeTG~I~~t~W~~~-~~~~~~~G~~V~i~n~~v~~~~G~~~L 83 (109)
T 2kbn_A 5 LTKIVDIVENGQWANLKAKVIQLWENTHESISQVGLLGDETGIIKFTIWKNA-ELPLLEQGESYLLRSVVVGEYNDRFQV 83 (109)
T ss_dssp BCCTTTCCSTTCEEEEEEEEEEEEECCCSSEEEEEEEECTTCCEEEEEEGGG-CCCCCCTTCEEEEEEEEEEEETTEEEE
T ss_pred ceEHHHCCCCCCcEEEEEEEEEeEcCCCCeEEEEEEEECCCCeEEEEEECcc-cccccCCCCEEEEEEEEEEEECCEEEE
Confidence 455666631123357888886542 332 478999999999875422 1246689999999964422 465543
Q ss_pred E
Q 009713 238 I 238 (528)
Q Consensus 238 ~ 238 (528)
.
T Consensus 84 ~ 84 (109)
T 2kbn_A 84 Q 84 (109)
T ss_dssp E
T ss_pred E
Confidence 3
No 56
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=71.98 E-value=16 Score=29.80 Aligned_cols=59 Identities=17% Similarity=0.156 Sum_probs=38.5
Q ss_pred eecccccCCCCc-EEEEEEEEEcC--------CC---c---EEEEeCCcEEEEEeccccccceeeccCeEEEEEEEE
Q 009713 168 STIQSLVGQTGR-RWVMGVISQLE--------DG---H---FYLEDLAASVEIDLSKAKITTGFFTENTIVVAEGEM 229 (528)
Q Consensus 168 t~I~~Llg~~g~-~~vlGml~~~~--------~g---~---~~LED~sg~V~Ldls~~~~~~g~f~~G~vV~veG~~ 229 (528)
.+|+.| +.|. ..+.|.+.... +| + +.|.|.||+|.+.+=+..... .+-+|++|.+.|..
T Consensus 3 ~kI~dl--~~g~~v~i~~~V~~~~~~r~~~~~~G~~~~v~~~~l~DeTG~I~~tlW~~~~~~-~i~~Gdvv~i~g~v 76 (97)
T 3e0e_A 3 YKISEL--MPNLSGTINAEVVTAYPKKEFSRKDGTKGQLKSLFLKDDTGSIRGTLWNELADF-EVKKGDIAEVSGYV 76 (97)
T ss_dssp ECGGGC--CTTEEEEEEEEEEEECCCEEEC----CCEEEEEEEEEETTEEEEEEEEGGGGGC-CCCTTCEEEEEEEE
T ss_pred eEHHHC--CCCCcEEEEEEEEECCCceEEEcCCCCeeEEEEEEEECCCCcEEEEEECCcccc-ccCCCCEEEEEEEE
Confidence 366777 3343 36888876432 34 2 579999999999754332211 47899999999974
No 57
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=71.90 E-value=9.9 Score=37.07 Aligned_cols=59 Identities=14% Similarity=0.241 Sum_probs=40.5
Q ss_pred EEEEEEEEEcCCC----cEEEEeCCc-EEEEEeccccc----cceeeccCeEEEEEEEEee-CCeEEEE
Q 009713 180 RWVMGVISQLEDG----HFYLEDLAA-SVEIDLSKAKI----TTGFFTENTIVVAEGEMLV-DGIFQVI 238 (528)
Q Consensus 180 ~~vlGml~~~~~g----~~~LED~sg-~V~Ldls~~~~----~~g~f~~G~vV~veG~~~~-~g~F~V~ 238 (528)
+.++|+|....++ .|.|+|.|| +|...+=.... ....|.+|++|-|.|.... .|..++.
T Consensus 74 V~ivG~V~~i~~~~~~~~~~L~D~TG~~I~~k~W~~~~~~~~~~~~~~~G~yVrV~G~v~~f~g~~qi~ 142 (270)
T 2pi2_A 74 VTIVGIIRHAEKAPTNIVYKIDDMTAAPMDVRQWVDTDDTSSENTVVPPETYVKVAGHLRSFQNKKSLV 142 (270)
T ss_dssp EEEEEEEEEEEECSSEEEEEEECSSSSCEEEEEECC-------CCCCCTTCEEEEEEEEEEETTEEEEE
T ss_pred EEEEEEEEEEEeccceEEEEEECCCCCEEEEEEEcCcCcccchhhcCCCCCEEEEEEEEEecCCeeEEE
Confidence 5799999876554 368999999 78875432111 1356789999999999853 4654443
No 58
>2z1a_A 5'-nucleotidase; metal-binding, nucleotide-binding, hydrolase, structural genomics, NPPSFA; HET: THM; 1.75A {Thermus thermophilus} SCOP: d.114.1.1 d.159.1.2
Probab=64.00 E-value=12 Score=40.15 Aligned_cols=77 Identities=10% Similarity=-0.005 Sum_probs=43.5
Q ss_pred CCeEEEEeCCc--cCcH-----------hHHHHHHHHHhcccCCCCCCe-EEEEEccCCCCCCCCCCcchhHHHHHHHHH
Q 009713 283 NDMFVILSDIW--LDNE-----------EVMGKLEVVLDGFESVEVVPS-LFVFMGNFCSHPCNLSFHSFSSLRLQFGKL 348 (528)
Q Consensus 283 ~~~~v~lSdv~--ld~~-----------~~le~L~~ll~~~~~~~~~P~-~~Vl~G~F~s~~~~~~~~~~~~~~~~f~~l 348 (528)
..+|+.+||+| +... --+..+..++...... .|. .++..||++++.. ...+.. -+.+
T Consensus 29 ~l~Il~~~D~H~~~~~~~~~~~~~~~~~gg~~~~~~~v~~~r~~--~~~~l~l~~GD~~~gs~------~~~~~~-~~~~ 99 (552)
T 2z1a_A 29 TLTLVHTNDTHAHLEPVELTLSGEKTPVGGVARRVALFDRVWAR--AKNPLFLDAGDVFQGTL------YFNQYR-GLAD 99 (552)
T ss_dssp EEEEEEECCCTTCCSCEEEECSSSEEEECCHHHHHHHHHHHHHH--SSSEEEEECSCCSSSSH------HHHHHT-THHH
T ss_pred eEEEEEEcccccCcccccccCcccccccCCHHHHHHHHHHHHhh--CCCEEEEeCCCCCCCcH------HHHHhC-CcHH
Confidence 45788889999 3322 1245666666665442 354 7888999997531 111110 1233
Q ss_pred HHHHHcCCCCCCceeEEEecCCCCCC
Q 009713 349 GQMIAAHPRLKEHSRFLFIPGPDDAG 374 (528)
Q Consensus 349 a~~l~~~p~l~~~~~~v~VPG~~Dp~ 374 (528)
++.+.... .-++++||||-.
T Consensus 100 ~~~ln~lg------~d~~~lGNHEfd 119 (552)
T 2z1a_A 100 RYFMHRLR------YRAMALGNHEFD 119 (552)
T ss_dssp HHHHHHTT------CCEEECCGGGGT
T ss_pred HHHHHhcC------CCcccccccccc
Confidence 44444321 116789999964
No 59
>3rl5_A Metallophosphoesterase mpped2; alpha-beta fold, metallophosphodiesterase, active site mutan nucleotide polymorphism, hydrolase; 1.26A {Rattus norvegicus} PDB: 3rl3_A* 3rl4_A*
Probab=56.43 E-value=7 Score=38.83 Aligned_cols=32 Identities=16% Similarity=0.100 Sum_probs=26.7
Q ss_pred CCCcEEEecCCCCcce-EEeCCeEEEcCCCCCC
Q 009713 478 PTPHAIVLADKSEQKA-FKYTGITCFNPGSFSS 509 (528)
Q Consensus 478 p~Pdvlil~d~~~~f~-~~y~gc~~vNpGsf~~ 509 (528)
--|++++.||.|.++. ..+.++++||||++..
T Consensus 245 ~~p~l~v~GH~H~~~~~~~~g~t~vvNpGs~~~ 277 (296)
T 3rl5_A 245 VRPKLHVFGGIHEGYGTMTDGYTTYINASTCTV 277 (296)
T ss_dssp TCCSEEEECSCGGGCEEEECSSCEEEECBCSCT
T ss_pred cCCCEEEECCccCCCceEEECCEEEEECCcCCc
Confidence 4578999999998875 4578899999999964
No 60
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=56.16 E-value=23 Score=28.11 Aligned_cols=61 Identities=20% Similarity=0.158 Sum_probs=40.3
Q ss_pred HHHHHHHHhcCCccCHHHHHHHHHhhccCCCChHHHHHHHHHHHhcccCCCcceeeHHHHHHHHHHH
Q 009713 7 KKIQKKMKIRGYGLRMDALDEILSFVNRFPDAEDEAIDLLLDQFEHESSLKSSIIDKESVNRVTSVL 73 (528)
Q Consensus 7 ~~i~~~fk~~gl~l~~~al~~l~~~~~~~~~~~~~~~~~~~~~i~k~~~~~~~~vd~~~l~~~~~~~ 73 (528)
+.+...|+...-.|++||++..++|+.-+ - .+++.+-..+ ++. ..+.+|+.+.|++++.+|
T Consensus 16 ril~~~f~~~ktrI~~dAl~l~aeyl~iF-V--~EAv~RA~~~-a~~--e~~~~le~~~LEki~pqL 76 (81)
T 3b0b_C 16 RLLRLHFRDGRTRVNGDALLLMAELLKVF-V--REAAARAARQ-AQA--EDLEKVDIEHVEKVLPQL 76 (81)
T ss_dssp HHHHHHCCSTTCEECHHHHHHHHHHHHHH-H--HHHHHHHHHH-HHH--TTCSEECHHHHHHHHHHH
T ss_pred HHHHHHhccCcccccHHHHHHHHHHHHHH-H--HHHHHHHHHH-HHh--CCCCeecHHHHHHHHHHH
Confidence 33344447778899999999999987321 1 1333332222 222 566799999999998876
No 61
>1ynx_A Replication factor-A protein 1; canonical OB fold, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=55.03 E-value=16 Score=30.54 Aligned_cols=63 Identities=14% Similarity=0.124 Sum_probs=40.9
Q ss_pred ceeecccccCCCCcEEEEEEEEEc--------C--CCc---EEEEeCCcEEEEEecccccc--ceeeccCeEEEEEEE
Q 009713 166 EISTIQSLVGQTGRRWVMGVISQL--------E--DGH---FYLEDLAASVEIDLSKAKIT--TGFFTENTIVVAEGE 228 (528)
Q Consensus 166 ~it~I~~Llg~~g~~~vlGml~~~--------~--~g~---~~LED~sg~V~Ldls~~~~~--~g~f~~G~vV~veG~ 228 (528)
.++||+.|--......|.|.|+.. . +|+ +.|-|++|+|+..+-+.... ...+.+|.++.+.|-
T Consensus 3 ~~~~Is~L~p~~~~w~I~~rV~~k~~~r~~~~~~~~g~~~~~~L~De~G~I~at~~~~~~~~f~~~l~eG~vy~Is~~ 80 (114)
T 1ynx_A 3 PIFAIEQLSPYQNVWTIKARVSYKGEIKTWHNQRGDGKLFNVNFLDTSGEIRATAFNDFATKFNEILQEGKVYYVSKA 80 (114)
T ss_dssp CBCCGGGCCTTTCCCEEEEEEEEEEEEEEEECSSCEEEEEEEEEEETTEEEEEEECHHHHHHHHHHSCSSSEEEEESC
T ss_pred ceEEHHHCCCCCCceEEEEEEEEeccceEEecCCCCceEEEEEEECCCCeEEEEECHHHHHHHHhhcccCcEEEECCc
Confidence 578999983222223677887732 2 344 46889999999877543211 356789999988653
No 62
>1wjj_A Hypothetical protein F20O9.120; DNA-binding protein-related, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.40.4.3
Probab=48.46 E-value=63 Score=28.46 Aligned_cols=35 Identities=6% Similarity=0.167 Sum_probs=28.0
Q ss_pred EEEEeCCcEEEEEeccccccceeeccCeEEEEEEEEe
Q 009713 194 FYLEDLAASVEIDLSKAKITTGFFTENTIVVAEGEML 230 (528)
Q Consensus 194 ~~LED~sg~V~Ldls~~~~~~g~f~~G~vV~veG~~~ 230 (528)
..|-|+||+|.+.+=+.. ..++-+|.+|-+++.|.
T Consensus 66 ~lVgDeTG~I~ftlW~e~--~~~l~~Gd~v~i~na~v 100 (145)
T 1wjj_A 66 CLIGDETGCILFTARNDQ--VDLMKPGATVILRNSRI 100 (145)
T ss_dssp EEEECSSCEEEEEECTTH--HHHTCTTCEEEEEEEEE
T ss_pred EEEEcCCcEEEEEEecCC--cCcCCCCCEEEEeccEE
Confidence 579999999999886543 23567999999999874
No 63
>2hpi_A DNA polymerase III alpha subunit; POL-beta-like nucleotidyltransferase fold, transferase; HET: DNA; 3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A*
Probab=48.01 E-value=27 Score=41.33 Aligned_cols=65 Identities=12% Similarity=0.142 Sum_probs=37.1
Q ss_pred CCCc-EEEEEEEEEc-----CCCc----EEEEeCCcEEEEEeccccc-c-ceeeccCeEEEEEEEEeeCC--eEEEEEe
Q 009713 176 QTGR-RWVMGVISQL-----EDGH----FYLEDLAASVEIDLSKAKI-T-TGFFTENTIVVAEGEMLVDG--IFQVITC 240 (528)
Q Consensus 176 ~~g~-~~vlGml~~~-----~~g~----~~LED~sg~V~Ldls~~~~-~-~g~f~~G~vV~veG~~~~~g--~F~V~~i 240 (528)
..|+ +.+.|||+.. ..|+ +.|||.+|.+++.+-.... . ..++.+|.+|+|+|.....+ .+.|.++
T Consensus 1040 ~~g~~v~v~G~v~~~~~~~Tk~G~~maf~tleD~tg~~evvvf~~~~~~~~~~l~~~~~~~v~G~v~~~~~~~l~~~~i 1118 (1220)
T 2hpi_A 1040 PGKPKVLLSGMVEEVVRKPTRSGGMMARFTLSDETGALEVVVFGRAYEGVSPKLKEDIPLLVLAEVEKGEELRVLAQAV 1118 (1220)
T ss_dssp SSSCEEEEEEEECCC------------CEEEEETTEEEEEC-------------CTTCEEEEEEEEC-----CEEEEEE
T ss_pred cCCCeEEEEEEEEEEEEeecCCCCeEEEEEEEECCCCEEEEEcHHHHHHHHHHhccCCEEEEEEEEEECCCcEEEEeee
Confidence 3555 4799999853 3463 5899999999997532222 1 35668999999999996443 2445554
No 64
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=45.57 E-value=49 Score=32.53 Aligned_cols=63 Identities=11% Similarity=0.001 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHhcCCccCHHHHHHHHHhhccCCCChHHHHHHHHHHHhcccCCCcceeeHHHHHHHHHH
Q 009713 4 QTRKKIQKKMKIRGYGLRMDALDEILSFVNRFPDAEDEAIDLLLDQFEHESSLKSSIIDKESVNRVTSV 72 (528)
Q Consensus 4 ~~r~~i~~~fk~~gl~l~~~al~~l~~~~~~~~~~~~~~~~~~~~~i~k~~~~~~~~vd~~~l~~~~~~ 72 (528)
++.+.+.+.++.+|+.+.++|++.|++..+. +-..+...++.+.-.. .+..||.+.|++++..
T Consensus 146 ~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g----dl~~~~~elekl~l~~--~~~~It~e~V~~~~~~ 208 (343)
T 1jr3_D 146 QLPRWVAARAKQLNLELDDAANQVLCYCYEG----NLLALAQALERLSLLW--PDGKLTLPRVEQAVND 208 (343)
T ss_dssp HHHHHHHHHHHHTTCEECHHHHHHHHHSSTT----CHHHHHHHHHHHHHHC--TTCEECHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHhch----HHHHHHHHHHHHHHhc--CCCCCCHHHHHHHHhh
Confidence 6778888999999999999999999986532 2222333333332221 2336888888877654
No 65
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=44.84 E-value=28 Score=27.87 Aligned_cols=54 Identities=19% Similarity=0.126 Sum_probs=35.4
Q ss_pred HhcCCccCHHHHHHHHHhhccCCCChHHHHHHHHHHHhcccCCCcceeeHHHHHHHHHHH
Q 009713 14 KIRGYGLRMDALDEILSFVNRFPDAEDEAIDLLLDQFEHESSLKSSIIDKESVNRVTSVL 73 (528)
Q Consensus 14 k~~gl~l~~~al~~l~~~~~~~~~~~~~~~~~~~~~i~k~~~~~~~~vd~~~l~~~~~~~ 73 (528)
+...-.|+.||++..++|+.-+ - .+++.+-.+ .++. ..+.+|+.+.||+++.+|
T Consensus 27 ~~~kTkIs~dAl~l~aeyl~iF-V--~EAv~RA~~-~a~~--e~~~~le~e~LEki~pQL 80 (84)
T 4dra_E 27 KDDKTKVSGDALQLMVELLKVF-V--VEAAVRGVR-QAQA--EDALRVDVDQLEKVLPQL 80 (84)
T ss_dssp SSTTCEECHHHHHHHHHHHHHH-H--HHHHHHHHH-HHHH--TTCSSBCHHHHHHHHHHH
T ss_pred cCCCccccHHHHHHHHHHHHHH-H--HHHHHHHHH-HHHh--cCCCcccHHHHHHHHHHH
Confidence 5567789999999999987321 1 123333222 1222 345689999999999876
No 66
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A
Probab=41.62 E-value=59 Score=34.11 Aligned_cols=64 Identities=13% Similarity=0.172 Sum_probs=43.7
Q ss_pred eeecccccCCCCc-EEEEEEEEEcC-CCc----EEEEeCCcEEEEEecccccc----ceeeccCeEEEEEEEEe
Q 009713 167 ISTIQSLVGQTGR-RWVMGVISQLE-DGH----FYLEDLAASVEIDLSKAKIT----TGFFTENTIVVAEGEML 230 (528)
Q Consensus 167 it~I~~Llg~~g~-~~vlGml~~~~-~g~----~~LED~sg~V~Ldls~~~~~----~g~f~~G~vV~veG~~~ 230 (528)
-+.|+.+....|+ +.|-|-|...+ .|+ +.|.|.+|.|++.++..... ...+..|++|.|+|...
T Consensus 19 ~~~i~~~~~~~g~~V~v~Gwv~~~R~~Gk~~~Fi~LrD~sg~iQvv~~~~~~~~~~~~~~l~~g~~V~V~G~v~ 92 (456)
T 3m4p_A 19 VCNIRDAAGLEGKLVTFKGWAYHIRKARKTLIFVELRDGSGYCQCVIFGKELCEPEKVKLLTRECSLEITGRLN 92 (456)
T ss_dssp CEECCSTTCCCSSEEEEEEEEEEEECCSSSEEEEEEECSSCEEEEEEESTTTTCHHHHTTCCTTCEEEEEEEEE
T ss_pred EEEhhhhhhcCCCEEEEEEEEEEEecCCCceEEEEEEeCCccEEEEEecccchhhHHhhcCCCccEEEEEeEEE
Confidence 3455555444455 48999998664 343 46999999999988752111 12357899999999984
No 67
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=40.61 E-value=38 Score=30.65 Aligned_cols=64 Identities=14% Similarity=0.150 Sum_probs=37.8
Q ss_pred HHHHHHHHHH-HhcCCccCHHHHHHHHHhhccCCCChHHHHHHHHHHHhcccCCCcceeeHHHHHHHHH
Q 009713 4 QTRKKIQKKM-KIRGYGLRMDALDEILSFVNRFPDAEDEAIDLLLDQFEHESSLKSSIIDKESVNRVTS 71 (528)
Q Consensus 4 ~~r~~i~~~f-k~~gl~l~~~al~~l~~~~~~~~~~~~~~~~~~~~~i~k~~~~~~~~vd~~~l~~~~~ 71 (528)
+.+..+++.+ +.+|+.+.++++++|++.. .|. -..+..+++.+.......+..||.+.|+++++
T Consensus 177 ~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~---~g~-~r~l~~~l~~~~~~a~~~~~~It~~~v~~~l~ 241 (242)
T 3bos_A 177 DEKLAALQRRAAMRGLQLPEDVGRFLLNRM---ARD-LRTLFDVLDRLDKASMVHQRKLTIPFVKEMLR 241 (242)
T ss_dssp GGHHHHHHHHHHHTTCCCCHHHHHHHHHHT---TTC-HHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc---cCC-HHHHHHHHHHHHHHHHHhCCCCcHHHHHHHhh
Confidence 3444555554 8899999999999998864 222 22233333333221101234589998888764
No 68
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Probab=38.02 E-value=67 Score=33.28 Aligned_cols=48 Identities=13% Similarity=0.145 Sum_probs=37.6
Q ss_pred cEEEEEEEEEcC-CCc---EEEEeCCcEEEEEeccccccceeec-cCeEEEEEEEEee
Q 009713 179 RRWVMGVISQLE-DGH---FYLEDLAASVEIDLSKAKITTGFFT-ENTIVVAEGEMLV 231 (528)
Q Consensus 179 ~~~vlGml~~~~-~g~---~~LED~sg~V~Ldls~~~~~~g~f~-~G~vV~veG~~~~ 231 (528)
++.|-|.|...+ .|+ +.|.|.+|.|++.+++ ..+. .|++|.|+|+...
T Consensus 15 ~V~v~Gwv~~~R~~g~~~F~~lrD~~g~iQ~v~~~-----~~l~~~~~~v~v~G~v~~ 67 (422)
T 1n9w_A 15 EVELLGFLHWRRDLGRIQFLLLRDRSGVVQVVTGG-----LKLPLPESALRVRGLVVE 67 (422)
T ss_dssp EEEEEEEEEEEEECSSEEEEEEEETTEEEEEEEES-----CCCCCTTCEEEEEEEEEE
T ss_pred EEEEEEEEEEEecCCCeEEEEEEECCEEEEEEEEc-----cccCCCCCEEEEEEEEEe
Confidence 358999998765 355 4688999999998864 2457 8999999999853
No 69
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=36.33 E-value=75 Score=27.94 Aligned_cols=60 Identities=12% Similarity=0.227 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHhcCCccCHHHHHHHHHhhccCCCChHHHHHHHHHHHhcccCCCcceeeHHHHHHHHH
Q 009713 4 QTRKKIQKKMKIRGYGLRMDALDEILSFVNRFPDAEDEAIDLLLDQFEHESSLKSSIIDKESVNRVTS 71 (528)
Q Consensus 4 ~~r~~i~~~fk~~gl~l~~~al~~l~~~~~~~~~~~~~~~~~~~~~i~k~~~~~~~~vd~~~l~~~~~ 71 (528)
+.++.+.+.++..|+.+.+++++.|.+..+ | +...+..+++.+... +..|+.+.|++++.
T Consensus 165 ~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~---g-~~r~l~~~l~~~~~~----~~~I~~~~v~~~~~ 224 (226)
T 2chg_A 165 AMKKRLLEICEKEGVKITEDGLEALIYISG---G-DFRKAINALQGAAAI----GEVVDADTIYQITA 224 (226)
T ss_dssp HHHHHHHHHHHHHTCCBCHHHHHHHHHHHT---T-CHHHHHHHHHHHHHT----CSCBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHcC---C-CHHHHHHHHHHHHhc----CceecHHHHHHHhc
Confidence 445555555688899999999999987532 2 223334444444332 25789999888775
No 70
>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.51 E-value=1.1e+02 Score=25.54 Aligned_cols=47 Identities=2% Similarity=0.006 Sum_probs=32.6
Q ss_pred EEEEEEEEc-CCCcEEEEeCCcEEEE-EeccccccceeeccCeEEEEEE
Q 009713 181 WVMGVISQL-EDGHFYLEDLAASVEI-DLSKAKITTGFFTENTIVVAEG 227 (528)
Q Consensus 181 ~vlGml~~~-~~g~~~LED~sg~V~L-dls~~~~~~g~f~~G~vV~veG 227 (528)
-++|.+.+. .++.|.++.++|...| .++.-....-++.+|++|+|+=
T Consensus 16 e~~g~V~~~lgn~~f~V~l~nG~~~la~i~GK~Rk~IwI~~GD~VlVe~ 64 (111)
T 2dgy_A 16 QQIVRVLRTPGNNLHEVETAQGQRFLVSMPSKYRKNIWIKRGDFLIVDP 64 (111)
T ss_dssp CEEEEEEECCSSSEEEEECTTSCEEEEECCTTCCSCCCCCSSCEEEEEE
T ss_pred eEEEEEEEeCCCCEEEEEeCCCCEEEEEechhhcccEEEcCCCEEEEEe
Confidence 356777664 6778999999995444 5654322346778999999983
No 71
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=31.12 E-value=63 Score=24.86 Aligned_cols=70 Identities=9% Similarity=0.151 Sum_probs=42.4
Q ss_pred CChHHHHHHHHHH-HhcCCccCHHHHHHHHHhhccCCCChHHHHHHHHHHHhccc-CCCcceeeHHHHHHHHHHHH
Q 009713 1 MSGQTRKKIQKKM-KIRGYGLRMDALDEILSFVNRFPDAEDEAIDLLLDQFEHES-SLKSSIIDKESVNRVTSVLL 74 (528)
Q Consensus 1 m~~~~r~~i~~~f-k~~gl~l~~~al~~l~~~~~~~~~~~~~~~~~~~~~i~k~~-~~~~~~vd~~~l~~~~~~~~ 74 (528)
|+.+.|..|++.. ++..+. ..--++.|++.-..+.|+| +..+..+-.... ......|+.+.++.+++.+.
T Consensus 1 ~d~~~R~~Il~~~l~~~~~~-~~vdl~~la~~t~G~SGAD---i~~l~~eA~~~a~~~~~~~i~~~df~~Al~~~~ 72 (83)
T 3aji_B 1 MDRRQKRLIFSTITSKMNLS-EEVDLEDYVARPDKISGAD---INSICQESGMLAVRENRYIVLAKDFEKAYKTVI 72 (83)
T ss_dssp CCHHHHHHHHHHHHTTSCBC-TTCCTHHHHTSSCCCCHHH---HHHHHHHHHHGGGTSCCSSBCHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHhCCCCCC-cccCHHHHHHHcCCCCHHH---HHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHc
Confidence 6778899999987 443332 1223677776555555654 334433333322 12246789999999998764
No 72
>1u9p_A PARC; unknown function; 1.90A {Escherichia coli} SCOP: a.43.1.1
Probab=30.87 E-value=42 Score=28.64 Aligned_cols=70 Identities=11% Similarity=0.169 Sum_probs=48.5
Q ss_pred CChHHHHHHHHHHHhcCCccCHHHHHHHHHhhccCCCCh--------HHHHHHHHHHHhcccCCCcceeeHHHHHHHHHH
Q 009713 1 MSGQTRKKIQKKMKIRGYGLRMDALDEILSFVNRFPDAE--------DEAIDLLLDQFEHESSLKSSIIDKESVNRVTSV 72 (528)
Q Consensus 1 m~~~~r~~i~~~fk~~gl~l~~~al~~l~~~~~~~~~~~--------~~~~~~~~~~i~k~~~~~~~~vd~~~l~~~~~~ 72 (528)
|...+++.|-...+..|.++.......|.+.+....... .+.+ ..+..++++. ..-|..+..+++.+.
T Consensus 25 LP~eLh~~La~~Ak~eGrSLN~eIv~~Le~sl~~~~~~~~~~~s~~~~~l~-~~ir~~a~~~---~~s~~~ei~~r~~~~ 100 (120)
T 1u9p_A 25 WPREVLDLVRKVAEENGRSVNSEIYQRVMESFKKEGRIGGTGGSGGGREVL-DLVRKVAEEN---GRSVNSEIYQRVMES 100 (120)
T ss_dssp CCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTSCCC-----CSHHHH-HHHHHHHHHH---TCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcccCCcccccccccchHHH-HHHHHHHHHH---HhhhHHHHHHHHHHH
Confidence 456889999999999999999999999999886543321 2323 3444555542 234566777777777
Q ss_pred HH
Q 009713 73 LL 74 (528)
Q Consensus 73 ~~ 74 (528)
++
T Consensus 101 ~~ 102 (120)
T 1u9p_A 101 FK 102 (120)
T ss_dssp HH
T ss_pred Hh
Confidence 64
No 73
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=30.61 E-value=1.4e+02 Score=24.53 Aligned_cols=60 Identities=8% Similarity=0.060 Sum_probs=37.2
Q ss_pred HHHHHHHHhcCCc-cCHHHHHHHHHhhccCCCChHHHHHHHHHHHhccc-CCCcceeeHHHHHHHHHHH
Q 009713 7 KKIQKKMKIRGYG-LRMDALDEILSFVNRFPDAEDEAIDLLLDQFEHES-SLKSSIIDKESVNRVTSVL 73 (528)
Q Consensus 7 ~~i~~~fk~~gl~-l~~~al~~l~~~~~~~~~~~~~~~~~~~~~i~k~~-~~~~~~vd~~~l~~~~~~~ 73 (528)
..|-|..+.-|.. |..+|.++|++.+. ..++.++++-.+.. ..+-..|+.+.|.-+++.+
T Consensus 33 ~~I~Rlar~~G~~rIs~~a~~~l~~vle-------~~~~~V~~dA~~~a~hakRktvt~~DV~~Alr~~ 94 (103)
T 2yfw_B 33 PAIRRLARRGGVKRISGLIYEEVRNVLK-------TFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQ 94 (103)
T ss_dssp HHHHHHHHHTTCCEECTTHHHHHHHHHH-------HHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHHHcCccccCHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 3455666777874 88999999987652 22333333222211 1344578899998888865
No 74
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=29.69 E-value=3.2e+02 Score=26.32 Aligned_cols=58 Identities=12% Similarity=0.008 Sum_probs=36.7
Q ss_pred EEEEEEEEcCCCcE--EEEeCCcEEEEEeccccccceeeccCeEEEEEEEEeeCCeEEEEEe
Q 009713 181 WVMGVISQLEDGHF--YLEDLAASVEIDLSKAKITTGFFTENTIVVAEGEMLVDGIFQVITC 240 (528)
Q Consensus 181 ~vlGml~~~~~g~~--~LED~sg~V~Ldls~~~~~~g~f~~G~vV~veG~~~~~g~F~V~~i 240 (528)
..-|+|.....|.| ++++..+.+...+.......+..+.|+.|.++... ++.-++.++
T Consensus 6 ~~~g~v~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~vGD~V~~~~~~--~~~g~I~~i 65 (302)
T 2yv5_A 6 LKRGLVVDREAQMIGVYLFEDGKTYRGIPRGKVLKKTKIYAGDYVWGEVVD--PNTFAIEEV 65 (302)
T ss_dssp CEEEEEEEEETTEEEEEETTTCCEEEEEECSSSTTSSCCCBTCEEEEEEEE--TTEEEEEEE
T ss_pred ceeEEEEEeeCCeEEEEEecCCEEEEEEEcCCcccCCCCcCceEEEEEEcc--CCeEEEEee
Confidence 46799999999999 88733336666655432212225689999998543 344445555
No 75
>3d03_A Phosphohydrolase; glycerophosphodiesterase, metallohydrolase, phosphatase, metal ION; 1.90A {Enterobacter aerogenes} SCOP: d.159.1.11 PDB: 2zoa_A 2zo9_B 2dxn_A 2dxl_A
Probab=29.58 E-value=67 Score=29.83 Aligned_cols=30 Identities=17% Similarity=0.259 Sum_probs=25.0
Q ss_pred CCCcEEEecCCCCcceEEeCCe-EEEcCCCC
Q 009713 478 PTPHAIVLADKSEQKAFKYTGI-TCFNPGSF 507 (528)
Q Consensus 478 p~Pdvlil~d~~~~f~~~y~gc-~~vNpGsf 507 (528)
+-+++++.||.|......+.|+ .++|||+.
T Consensus 186 ~~v~~vl~GH~H~~~~~~~~g~~~~~~pg~~ 216 (274)
T 3d03_A 186 PSLTRIFCGHNHSLTMTQYRQALISTLPGTV 216 (274)
T ss_dssp TTEEEEEECSSSSCEEEEETTEEEEECCCSS
T ss_pred CCceEEEeCCCCCchhheECCEEEEEcCCcc
Confidence 3468999999998888888995 67899985
No 76
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*
Probab=28.90 E-value=1.2e+02 Score=31.65 Aligned_cols=54 Identities=22% Similarity=0.333 Sum_probs=39.2
Q ss_pred Cc-EEEEEEEEEcC-CCc---EEEEeCCcEEEEEecccccc------ceeeccCeEEEEEEEEee
Q 009713 178 GR-RWVMGVISQLE-DGH---FYLEDLAASVEIDLSKAKIT------TGFFTENTIVVAEGEMLV 231 (528)
Q Consensus 178 g~-~~vlGml~~~~-~g~---~~LED~sg~V~Ldls~~~~~------~g~f~~G~vV~veG~~~~ 231 (528)
|+ +.|-|-|...+ .|+ +.|.|.+|.|++.++....+ ...+..|++|.|+|....
T Consensus 16 g~~V~v~Gwv~~~R~~g~~~Fi~LrD~~g~iQ~v~~~~~~~~~~~~~~~~l~~~~~V~V~G~v~~ 80 (438)
T 3nem_A 16 GQKVKVAGWVWEVKDLGGIKFLWIRDRDGIVQITAPKKKVDPELFKLIPKLRSEDVVAVEGVVNF 80 (438)
T ss_dssp TCEEEEEEEEEEEEEETTEEEEEEEETTEEEEEEEETTTSCHHHHHHGGGCCTTCEEEEEEEEEE
T ss_pred CCEEEEEEEEEEEecCCCeEEEEEEECCeeEEEEEeCCcCCHHHHHHHhcCCCCCEEEEEEEEEe
Confidence 44 58999997654 355 36999999999988753211 123578999999999854
No 77
>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} SCOP: b.40.4.5
Probab=27.81 E-value=1e+02 Score=24.26 Aligned_cols=48 Identities=19% Similarity=0.028 Sum_probs=34.7
Q ss_pred EEEEEEEEc-CCCcEEEEeCCc-EEEEEecccc-ccceeeccCeEEEEEEE
Q 009713 181 WVMGVISQL-EDGHFYLEDLAA-SVEIDLSKAK-ITTGFFTENTIVVAEGE 228 (528)
Q Consensus 181 ~vlGml~~~-~~g~~~LED~sg-~V~Ldls~~~-~~~g~f~~G~vV~veG~ 228 (528)
-+.|.|.+. ++|.|.++.++| .+...++.-. .+.-.+.+|+.|.|+=.
T Consensus 15 e~~G~Vik~l~n~~f~V~l~nG~~~~c~i~GK~Rk~~I~Il~GD~V~ve~~ 65 (79)
T 3i4o_A 15 EVEGRVVEPLPNAMFRIELENGHKVLAHISGKMRQHYIRILPEDRVVVELS 65 (79)
T ss_dssp EEEEEEEEEETTTEEEEEETTSCEEEEEECHHHHHTTCCCCTTCEEEEEEE
T ss_pred EEEEEEEEEcCCCEEEEEeCCCCEEEEEeCcceecCCccCCCCCEEEEEEC
Confidence 578999987 599999999988 5556666321 12345679999999753
No 78
>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A
Probab=27.71 E-value=1e+02 Score=28.77 Aligned_cols=66 Identities=17% Similarity=0.235 Sum_probs=0.0
Q ss_pred ccceeecccccCCCCcE--EEEEEEEEcCC---------Cc------EEEEeCCc-EEEEEeccccccceeeccCeEEEE
Q 009713 164 SCEISTIQSLVGQTGRR--WVMGVISQLED---------GH------FYLEDLAA-SVEIDLSKAKITTGFFTENTIVVA 225 (528)
Q Consensus 164 ~~~it~I~~Llg~~g~~--~vlGml~~~~~---------g~------~~LED~sg-~V~Ldls~~~~~~g~f~~G~vV~v 225 (528)
.+.+++|..|....... -|+|.|....+ |+ +.|.|.+| +|++.+=......--..+|.||++
T Consensus 123 ~~~f~~i~~i~~~~~~~~vDViG~V~~v~~~~~~~~k~~g~~~~~r~~~l~D~sg~~i~~tLWg~~a~~~~~~~~~vv~i 202 (246)
T 1jmc_A 123 QFDFTGIDDLENKSKDSLVDIIGICKSYEDATKITVRSNNREVAKRNIYLMDTSGKVVTATLWGEDADKFDGSRQPVLAI 202 (246)
T ss_dssp CCCBCCGGGGGGSCTTCEEEEEEEEEEECCCEEEEETTTTEEEEEEEEEEECTTCCEEEEEEEHHHHHHCCCTTCCEEEE
T ss_pred eeeeEEHHHHhcccCCCceeEEEEEEEecCeEEEEEecCCCccEEEEEEEECCCCCEEEEEEEchhhhhcccCCCCEEEE
Q ss_pred EEEE
Q 009713 226 EGEM 229 (528)
Q Consensus 226 eG~~ 229 (528)
.|..
T Consensus 203 ~~~~ 206 (246)
T 1jmc_A 203 KGAR 206 (246)
T ss_dssp EEEE
T ss_pred EEEE
No 79
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=27.01 E-value=1.4e+02 Score=24.40 Aligned_cols=60 Identities=8% Similarity=0.024 Sum_probs=37.9
Q ss_pred HHHHHHHHhcCC-ccCHHHHHHHHHhhccCCCChHHHHHHHHHHHhccc-CCCcceeeHHHHHHHHHHH
Q 009713 7 KKIQKKMKIRGY-GLRMDALDEILSFVNRFPDAEDEAIDLLLDQFEHES-SLKSSIIDKESVNRVTSVL 73 (528)
Q Consensus 7 ~~i~~~fk~~gl-~l~~~al~~l~~~~~~~~~~~~~~~~~~~~~i~k~~-~~~~~~vd~~~l~~~~~~~ 73 (528)
..|-|..+.-|. .|..+|.++|++.+. ..++.++++-.+.. ..+-..|+.+.|.-+++.+
T Consensus 33 ~~I~Rlar~~G~~rIs~~a~~~l~~vle-------~~~~~V~~dA~~~a~hakRktIt~~DV~~Alr~~ 94 (103)
T 1tzy_D 33 PAIRRLARRGGVKRISGLIYEETRGVLK-------VFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 94 (103)
T ss_dssp HHHHHHHHHTTCCEECTTHHHHHHHHHH-------HHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHT
T ss_pred HHHHHHHHHcCccccCHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHc
Confidence 455666677788 499999999987652 22333333222211 1344578899988888764
No 80
>3kf6_A Protein STN1; OB fold, chromosomal protein, DNA-binding, nucleus, telomere; 1.65A {Schizosaccharomyces pombe}
Probab=27.00 E-value=87 Score=27.94 Aligned_cols=63 Identities=10% Similarity=0.149 Sum_probs=40.7
Q ss_pred cEEEEEEEEEcCC--C--cEEEEeCCc-EEEEEecccc-cc----ceeeccCeEEEEEEEEee-CC--eEEEEEec
Q 009713 179 RRWVMGVISQLED--G--HFYLEDLAA-SVEIDLSKAK-IT----TGFFTENTIVVAEGEMLV-DG--IFQVITCG 241 (528)
Q Consensus 179 ~~~vlGml~~~~~--g--~~~LED~sg-~V~Ldls~~~-~~----~g~f~~G~vV~veG~~~~-~g--~F~V~~i~ 241 (528)
++.|+|+|...++ . .|.|.|.|| .|++..-... .+ ..-+-+|.+|=|.|.... .| ...+..+.
T Consensus 49 ~V~IvGiVv~~~~~~~~~~ytIDD~TG~~I~cv~w~~~~~~~~~~~~~l~~G~~VrV~G~v~~fr~~rqI~~~~i~ 124 (159)
T 3kf6_A 49 WIQIVGYIAAIDIYEGKHVLTVDDCSGMVLRVVFIIQDDFSMSKRAISMSPGNVVCVFGKINSFRSEVELIAQSFE 124 (159)
T ss_dssp EEEEEEEEEEEEEETTEEEEEEECSSSCEEEEEEEGGGCHHHHHHHTTCCTTCEEEEEEEEECSSSSCEEEEEEEE
T ss_pred EEEEEEEEEEEEEeCCEEEEEEecCCCCeEEEEEEccCCCCcccccccCCCCCEEEEEEEEEeeCCEEEEEEEEEE
Confidence 3579999986543 3 378999999 5888654322 10 112468999999999964 23 35555553
No 81
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=26.34 E-value=93 Score=29.54 Aligned_cols=28 Identities=14% Similarity=0.338 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHhcCCccCHHHHHHHHHh
Q 009713 4 QTRKKIQKKMKIRGYGLRMDALDEILSF 31 (528)
Q Consensus 4 ~~r~~i~~~fk~~gl~l~~~al~~l~~~ 31 (528)
+.+..+.+.+++.|+.+.++|++.|++.
T Consensus 165 ~~~~~l~~~~~~~~~~i~~~~l~~l~~~ 192 (319)
T 2chq_A 165 AMKKRLLEICEKEGVKITEDGLEALIYI 192 (319)
T ss_dssp HHHHHHHHHHHTTCCCBCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 4555666666889999999999999864
No 82
>3zth_A STU0660; DNA binding, crispr, CAS; 2.40A {Streptococcus thermophilus}
Probab=26.25 E-value=2.2e+02 Score=28.39 Aligned_cols=73 Identities=19% Similarity=0.273 Sum_probs=48.9
Q ss_pred eCCccCcHhHHHHHHHHHhcccCCCCCCeEEEEEccCCCCCCCCCCcchhHHHHHHHHHHHHHHcCCCCCCceeEEEecC
Q 009713 290 SDIWLDNEEVMGKLEVVLDGFESVEVVPSLFVFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIAAHPRLKEHSRFLFIPG 369 (528)
Q Consensus 290 Sdv~ld~~~~le~L~~ll~~~~~~~~~P~~~Vl~G~F~s~~~~~~~~~~~~~~~~f~~la~~l~~~p~l~~~~~~v~VPG 369 (528)
|.=|+++.+-+--|-+|++...+....|..+|+-- +|.- -+..+|.+.|+++..+-.++|++ .|+|-|+
T Consensus 171 s~E~vsn~ekl~~fL~mL~~~ls~~t~k~LLV~kN--iD~~-----Ls~~sy~~i~~~~~~ls~k~~nl----~fi~fpS 239 (350)
T 3zth_A 171 SFEWVSNIDKLSLFLEMLDHLLSQTTEKYLIVLKN--IDGF-----ISEESYTIFYRQICHLVKKYPNL----TFILFPS 239 (350)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHTTCCSCEEEEEES--CGGG-----SCHHHHHHHHHHHHHHHHHCTTE----EEEEECC
T ss_pred ChhhhccHHHHHHHHHHHHHHHhcCCCcEEEEEeC--HHHh-----hcHHHHHHHHHHHHHHHhhCCCe----EEEEEec
Confidence 55566777655555566665544433466666543 2221 12578999999999888889875 9999999
Q ss_pred CCCC
Q 009713 370 PDDA 373 (528)
Q Consensus 370 ~~Dp 373 (528)
+.=+
T Consensus 240 ~egY 243 (350)
T 3zth_A 240 DQGY 243 (350)
T ss_dssp SSSC
T ss_pred CCCc
Confidence 9766
No 83
>2pi2_E Replication protein A 14 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_B 2z6k_C
Probab=25.92 E-value=3.3e+02 Score=23.67 Aligned_cols=59 Identities=15% Similarity=0.211 Sum_probs=42.0
Q ss_pred CcE-EEEEEEEEc--CCCcEEEEeCCc-EEEEEeccccccceeeccCeEEEEEEEEeeCCeEEEEEe
Q 009713 178 GRR-WVMGVISQL--EDGHFYLEDLAA-SVEIDLSKAKITTGFFTENTIVVAEGEMLVDGIFQVITC 240 (528)
Q Consensus 178 g~~-~vlGml~~~--~~g~~~LED~sg-~V~Ldls~~~~~~g~f~~G~vV~veG~~~~~g~F~V~~i 240 (528)
|+. .++|.+.+. ..+.+.|+..+| .|.+.+.... .. -.+.+|=|.|+...++...+..+
T Consensus 43 Gk~VriVGkV~~~~~~G~~~~l~s~Dg~~VtV~l~~pL--~~--~~~~~VEViG~V~~~~tI~~~~~ 105 (142)
T 2pi2_E 43 DKPVCFVGRLEKIHPTGKMFILSDGEGKNGTIELMEPL--DE--EISGIVEVVGRVTAKATILCTSY 105 (142)
T ss_dssp TCEEEEEEEEEEECTTSSEEEEECTTSCEEEEECSSCC--SS--CCCSEEEEEEEECTTSCEEEEEE
T ss_pred CCEEEEEEEEeEEcCCCCEEEEEeCCCcEEEEEeCCCC--Cc--cCCCEEEEEEEECCCCcEEEEEE
Confidence 554 899999998 556678887766 8888875321 11 24779999999976677666654
No 84
>3au7_A TIAS, putative uncharacterized protein; ATP hydrolysis, RNA binding protein; 2.60A {Archaeoglobus fulgidus} PDB: 3amt_A* 3amu_A*
Probab=25.69 E-value=2.7e+02 Score=28.64 Aligned_cols=61 Identities=18% Similarity=0.249 Sum_probs=43.5
Q ss_pred cEEEEEEEEEc----CCCc--EEEEeCCcEEEEEecc-cc-cc--ceeeccCeEEEEEEEEeeCCeEEEEEe
Q 009713 179 RRWVMGVISQL----EDGH--FYLEDLAASVEIDLSK-AK-IT--TGFFTENTIVVAEGEMLVDGIFQVITC 240 (528)
Q Consensus 179 ~~~vlGml~~~----~~g~--~~LED~sg~V~Ldls~-~~-~~--~g~f~~G~vV~veG~~~~~g~F~V~~i 240 (528)
..+|-|-|+.. +.|+ +.|+|.+++|.+-.=+ ++ +. --.+.+||.|.|.|... .|.+.+.++
T Consensus 286 ~~~v~G~V~~~P~~~~GGHV~f~l~d~~~~i~c~ayeptk~fr~~vr~L~~GD~V~v~G~v~-~gtLnvEk~ 356 (402)
T 3au7_A 286 SYRLRGRVTLEPYDIEGGHVFFEIDTKFGSVKCAAFEPTKQFRNVIRLLRKGDVVEVYGSMK-KDTINLEKI 356 (402)
T ss_dssp EEEEEEEEEEEEEEETTTEEEEEEEETTEEEEEEECGGGTTHHHHHTTCCTTCEEEEEEEEE-TTEEEEEEE
T ss_pred eEEEEEEEecCcEeccCceEEEEEEcCCCEEEEEEEccchHHHHHHhcCCCCCEEEEEEeec-CCEEEEEEE
Confidence 34899999865 3566 4788999998886422 11 11 13447999999999985 568888877
No 85
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Probab=25.59 E-value=1.2e+02 Score=32.12 Aligned_cols=62 Identities=15% Similarity=0.239 Sum_probs=42.9
Q ss_pred cEEEEEEEEEcCC-Cc---EEEEeCCcEEEEEecccccc-------ceeeccCeEEEEEEEEee--CCe--EEEEEe
Q 009713 179 RRWVMGVISQLED-GH---FYLEDLAASVEIDLSKAKIT-------TGFFTENTIVVAEGEMLV--DGI--FQVITC 240 (528)
Q Consensus 179 ~~~vlGml~~~~~-g~---~~LED~sg~V~Ldls~~~~~-------~g~f~~G~vV~veG~~~~--~g~--F~V~~i 240 (528)
.+.|-|.|...++ |+ +.|.|.+|.|++.++....+ ...+..|++|.|+|.... .|. .+|+++
T Consensus 66 ~V~v~Gwv~~~R~~gk~~F~~LrD~sg~iQvv~~~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~ge~ei~~~~i 142 (504)
T 1e1o_A 66 EVSVAGRMMTRRIMGKASFVTLQDVGGRIQLYVARDSLPEGVYNDQFKKWDLGDIIGARGTLFKTQTGELSIHCTEL 142 (504)
T ss_dssp EEEEEEEEEEEEEETTEEEEEEEETTEEEEEEEETTTSSTTHHHHTGGGCCTTCEEEEEEEEEECTTCCEEEEEEEE
T ss_pred EEEEEEEEEEEecCCCcEEEEEEECCeeEEEEEECCcCCHHHHHHHHhcCCCCCEEEEEEEEEecCCceEEEEEEEE
Confidence 3589999987653 54 47899999999988643211 123578999999999853 232 455555
No 86
>2yeq_A Apased, PHOD, alkaline phosphatase D; hydrolase, phosphodiesterase; HET: PE5; 1.93A {Bacillus subtilis}
Probab=25.34 E-value=1.5e+02 Score=31.48 Aligned_cols=83 Identities=7% Similarity=0.078 Sum_probs=47.3
Q ss_pred CCeEEEEeCCccCcHhHHHHHHHHHhcccCCCCCCeEEEEEccCCC--CCCCC-------------CCcchhHHHHHHHH
Q 009713 283 NDMFVILSDIWLDNEEVMGKLEVVLDGFESVEVVPSLFVFMGNFCS--HPCNL-------------SFHSFSSLRLQFGK 347 (528)
Q Consensus 283 ~~~~v~lSdv~ld~~~~le~L~~ll~~~~~~~~~P~~~Vl~G~F~s--~~~~~-------------~~~~~~~~~~~f~~ 347 (528)
..+|+++|+-+.... .+..+..+.. ..|+.+|++||.+- .+... ...+..+|++.|..
T Consensus 116 ~~rfa~~sc~~~~~g-~~~~~~~ia~------~~~D~vlhlGD~iY~d~~~~~~~~~~~~R~~~~~e~~tl~~yr~~y~~ 188 (527)
T 2yeq_A 116 QMTFAFASCQQYEHG-YYTAYKHMAK------EKLDLVFHLGDYIYEYGPNEYVSKTGNVRTHNSAEIITLQDYRNRHAQ 188 (527)
T ss_dssp CEEEEEECCCCGGGC-CCHHHHHHTT------SCCSEEEECSCSSCCCCTTSSCCTTCCCSCCSSSSCCSHHHHHHHHHH
T ss_pred CeEEEEEecCCCCCC-ccHHHHHHHh------cCCCEEEecCCcccCCCCCcccccccccccCCcccccCHHHHHHHHHH
Confidence 357888898765321 1233333322 26999999999993 22111 01124566666653
Q ss_pred HH--HHHHcCCCCCCceeEEEecCCCCCCC
Q 009713 348 LG--QMIAAHPRLKEHSRFLFIPGPDDAGP 375 (528)
Q Consensus 348 la--~~l~~~p~l~~~~~~v~VPG~~Dp~~ 375 (528)
.- .-|. .+.+.+.++.+.|+||-..
T Consensus 189 ~~~dp~lq---~~~a~~P~i~~wDDHE~~n 215 (527)
T 2yeq_A 189 YRSDANLK---AAHAAFPWVVTWDDHEVEN 215 (527)
T ss_dssp HHTCHHHH---HHHHHSEEEECCCSTTTST
T ss_pred HhCCHHHH---HHHhcCCEEEecccccccC
Confidence 21 0111 1234578999999999963
No 87
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Probab=24.98 E-value=1.1e+02 Score=32.72 Aligned_cols=62 Identities=13% Similarity=0.135 Sum_probs=43.0
Q ss_pred cEEEEEEEEEcC-CC-c---EEEEeCCcEEEEEeccccc-c-------ceeeccCeEEEEEEEEee--CCe--EEEEEe
Q 009713 179 RRWVMGVISQLE-DG-H---FYLEDLAASVEIDLSKAKI-T-------TGFFTENTIVVAEGEMLV--DGI--FQVITC 240 (528)
Q Consensus 179 ~~~vlGml~~~~-~g-~---~~LED~sg~V~Ldls~~~~-~-------~g~f~~G~vV~veG~~~~--~g~--F~V~~i 240 (528)
.+.|-|.|...+ .| + +.|.|.+|.|++.++.... + ...+..|++|.|+|.... .|. .+|+++
T Consensus 57 ~V~v~Grv~~~R~~gkk~~F~~LrD~sg~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~V~G~v~~t~~ge~ei~~~~i 135 (521)
T 3bju_A 57 TLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNYKSEEEFIHINNKLRRGDIIGVQGNPGKTKKGELSIIPYEI 135 (521)
T ss_dssp CEEEEEEEEEEEESSSSEEEEEEEETTEEEEEEEEGGGSSCHHHHHHHHHHCCTTCEEEEEEEEEECTTCCEEEEEEEE
T ss_pred EEEEEEEEEEEecCCCCcEEEEEEECCEEEEEEEECCccCCHHHHHHHHhcCCCCCEEEEEEEEEecCCCCEEEEEeEE
Confidence 468999998655 46 4 4799999999998864321 1 123578999999999853 232 455555
No 88
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A*
Probab=24.87 E-value=1.3e+02 Score=31.15 Aligned_cols=53 Identities=19% Similarity=0.196 Sum_probs=37.7
Q ss_pred cEEEEEEEEEcCC-C-c---EEEEeCCcEEEEEecccccc---ceeeccCeEEEEEEEEee
Q 009713 179 RRWVMGVISQLED-G-H---FYLEDLAASVEIDLSKAKIT---TGFFTENTIVVAEGEMLV 231 (528)
Q Consensus 179 ~~~vlGml~~~~~-g-~---~~LED~sg~V~Ldls~~~~~---~g~f~~G~vV~veG~~~~ 231 (528)
++.|-|.|...++ | . +.|.|.+|.|++.+++.... ...+..|++|.|+|....
T Consensus 13 ~V~v~Gwv~~~R~~Gk~~~Fi~LrD~~g~iQvv~~~~~~~~~~~~~l~~~~~v~v~G~v~~ 73 (435)
T 2xgt_A 13 RVCIKGWIHRMRRQGKSLMFFILRDGTGFLQVLLMDKLCQTYDALTVNTECTVEIYGAIKE 73 (435)
T ss_dssp EEEEEEEEEEEEECTTSEEEEEEECSSCEEEEEEEGGGGSSHHHHHCCTTCEEEEEEEEEE
T ss_pred EEEEEEEEEEecccCCCcEEEEEEECCceEEEEECCcchhHHHHhcCCCCCEEEEEEEEEe
Confidence 3589999987653 3 3 57889999999988632111 112578999999999743
No 89
>2nxf_A Putative dimetal phosphatase; dinuclear metal center phosphatase, metalloprotein, metallophosphoesterase, protein structure initiative; 1.70A {Danio rerio} SCOP: d.159.1.12
Probab=23.50 E-value=1e+02 Score=29.05 Aligned_cols=46 Identities=4% Similarity=0.042 Sum_probs=33.2
Q ss_pred CcEEEecCCCCcceEE-eCCeEEEcCCCCC----CCcEEEEEECCCCeEEe
Q 009713 480 PHAIVLADKSEQKAFK-YTGITCFNPGSFS----SDSTFVAYRPCTQEVEF 525 (528)
Q Consensus 480 Pdvlil~d~~~~f~~~-y~gc~~vNpGsf~----~~~sf~~y~p~~~~~e~ 525 (528)
.++++.||.|...... ++|+.++|.|++. ...+|.+++....+++.
T Consensus 258 v~~~~~GH~H~~~~~~~~~g~~~i~~~~~~~~~~~~~~y~~v~~~~~~~~~ 308 (322)
T 2nxf_A 258 VLCFIAGHDHDGGRCTDSSGAQHITLEGVIETPPHSHAFATAYLYEDRMVM 308 (322)
T ss_dssp EEEEEECSCTTCEEEECTTSCEEEECCCGGGCCTTSCEEEEEEECSSEEEE
T ss_pred eEEEEcCCcCCCCceeccCCceEEEecchhhCCCCCCcEEEEEEECCeEEE
Confidence 4569999999887766 8899988877763 23567766665555554
No 90
>1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel, RNA-binding protein, gene regulation; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=21.38 E-value=2.2e+02 Score=24.98 Aligned_cols=47 Identities=4% Similarity=0.056 Sum_probs=33.1
Q ss_pred EEEEEEEEc-CCCcEEEEeCCcEEEE-EeccccccceeeccCeEEEEEE
Q 009713 181 WVMGVISQL-EDGHFYLEDLAASVEI-DLSKAKITTGFFTENTIVVAEG 227 (528)
Q Consensus 181 ~vlGml~~~-~~g~~~LED~sg~V~L-dls~~~~~~g~f~~G~vV~veG 227 (528)
-+.|.|... +++.|.++-++|...| .++.-....-++.+|++|+|+=
T Consensus 32 e~~g~V~e~lgn~~f~V~l~nG~~~La~I~GKmRk~IwI~~GD~VlVe~ 80 (143)
T 1d7q_A 32 QEYAQVIKMLGNGRLEAMCFDGVKRLCHIRGKLRKKVWINTSDIILVGL 80 (143)
T ss_dssp EEEEEEEEECSSSEEEEEETTTEEEEEECCSGGGGSCCCCTTCEEEEEC
T ss_pred EEEEEEEEEcCCCEEEEEeCCCCEEEEEecccceeeEEecCCCEEEEee
Confidence 466667654 6788999999996555 5553322256778999999973
No 91
>1ii7_A MRE11 nuclease; RAD50, DNA double-strand break repair, DAMP, manganese, replication; HET: DA; 2.20A {Pyrococcus furiosus} SCOP: d.159.1.4 PDB: 3dsc_A* 3dsd_A* 1s8e_A
Probab=21.14 E-value=1.7e+02 Score=28.63 Aligned_cols=29 Identities=21% Similarity=0.287 Sum_probs=25.3
Q ss_pred CcEEEecCCCCcceEEeCCeEEEcCCCCC
Q 009713 480 PHAIVLADKSEQKAFKYTGITCFNPGSFS 508 (528)
Q Consensus 480 Pdvlil~d~~~~f~~~y~gc~~vNpGsf~ 508 (528)
.|.+.+||.|.+..+...+..++|||+-.
T Consensus 199 ~dyvalGH~H~~q~~~~~~~~i~ypGS~~ 227 (333)
T 1ii7_A 199 YLYYALGHIHKRYETSYSGSPVVYPGSLE 227 (333)
T ss_dssp CSEEEEESCSSCEEEEETTEEEEECCCSS
T ss_pred CCEEEccccccceecCCCCceEEEcCCCe
Confidence 48999999998877777889999999974
No 92
>4gop_A Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=20.49 E-value=3.7e+02 Score=22.28 Aligned_cols=59 Identities=17% Similarity=0.300 Sum_probs=41.4
Q ss_pred CcE-EEEEEEEEcCCCcEEEEeC-CcEEEEEeccccccceeeccCeEEEEEEEEeeC-CeEEEEEe
Q 009713 178 GRR-WVMGVISQLEDGHFYLEDL-AASVEIDLSKAKITTGFFTENTIVVAEGEMLVD-GIFQVITC 240 (528)
Q Consensus 178 g~~-~vlGml~~~~~g~~~LED~-sg~V~Ldls~~~~~~g~f~~G~vV~veG~~~~~-g~F~V~~i 240 (528)
|+. .++|.+.+.+.+.+.|+.. .|.|.+.++... -+..|.+|=|.|+...+ |.|.-..|
T Consensus 18 g~~VrivGkV~~~~g~~~~l~s~d~~~Vtv~l~~~~----~~~~~~~vEViG~V~~~~~~~~~~~I 79 (114)
T 4gop_A 18 GQTVRIVGKVHKVTGNTLLMQTSDLGNVEIAMTPDS----DVSSSTFVEVTGKVSDAGSSFQANQI 79 (114)
T ss_dssp TSEEEEEEEEEEEETTEEEEECTTSCEEEEECCSSC----CGGGCSEEEEEEEECTTSSEEEEEEE
T ss_pred CCeEEEEEEEeeeCCCEEEEEeCCCCEEEEEeCCCC----CcccCcEEEEEEEEcCCCCcccCCeE
Confidence 554 8999999988888889986 458888876421 12358899999998654 33443333
No 93
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=20.31 E-value=5.6e+02 Score=24.41 Aligned_cols=57 Identities=11% Similarity=-0.045 Sum_probs=34.8
Q ss_pred EEEEEEEcCCCcEEEEeCC-cEEEEEecccccc-c-eeeccCeEEEEEEEEeeCCeEEEEEe
Q 009713 182 VMGVISQLEDGHFYLEDLA-ASVEIDLSKAKIT-T-GFFTENTIVVAEGEMLVDGIFQVITC 240 (528)
Q Consensus 182 vlGml~~~~~g~~~LED~s-g~V~Ldls~~~~~-~-g~f~~G~vV~veG~~~~~g~F~V~~i 240 (528)
.-|+|.....|.|.+++.. |++-.-+....+. . ..-+.|..+.++ ...++.+.+..+
T Consensus 11 ~~g~v~~~~~~~~~v~~~~~~sl~~~~~~~~f~~~~~~pTiGd~~~~~--~~~~~~~~iwD~ 70 (301)
T 1u0l_A 11 RRGIVVSFHSNMVTVEDEETGERILCKLRGKFRLQNLKIYVGDRVEYT--PDETGSGVIENV 70 (301)
T ss_dssp EEEEEEEEETTEEEEEETTTCCEEEEEECGGGTTTTCCCCTTCEEEEE--CCCSSSEEEEEE
T ss_pred eeEEEEEeeCCEEEEEEcCCCcEEEEEEcccccccCCCCCCccEEEEE--EcCCCeEEEEEE
Confidence 4799999999999998554 6554443332332 1 122457776654 223457777777
Done!