Query 009714
Match_columns 528
No_of_seqs 210 out of 2700
Neff 9.3
Searched_HMMs 46136
Date Thu Mar 28 16:27:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009714.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009714hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00906 2A0303 cationic amin 100.0 1.5E-61 3.3E-66 513.8 51.6 469 37-512 57-557 (557)
2 PRK15049 L-asparagine permease 100.0 1.5E-50 3.2E-55 426.0 45.2 388 34-504 53-467 (499)
3 TIGR00908 2A0305 ethanolamine 100.0 9.6E-51 2.1E-55 424.1 43.0 389 36-512 33-436 (442)
4 PRK11357 frlA putative fructos 100.0 6.3E-51 1.4E-55 425.6 40.4 421 4-511 4-440 (445)
5 PRK11387 S-methylmethionine tr 100.0 1.7E-50 3.7E-55 424.5 40.9 406 21-509 26-459 (471)
6 TIGR00909 2A0306 amino acid tr 100.0 4.1E-50 8.8E-55 418.2 42.3 399 36-505 30-429 (429)
7 PRK10655 potE putrescine trans 100.0 4.3E-50 9.3E-55 418.7 39.8 389 39-513 35-435 (438)
8 PRK10197 gamma-aminobutyrate t 100.0 3.3E-49 7.1E-54 411.4 42.9 403 34-527 17-445 (446)
9 PRK10249 phenylalanine transpo 100.0 3.6E-49 7.9E-54 412.5 43.2 362 34-481 46-426 (458)
10 PRK10746 putative transport pr 100.0 4.6E-49 1E-53 411.4 41.2 392 34-511 35-454 (461)
11 PRK10644 arginine:agmatin anti 100.0 5.5E-49 1.2E-53 410.7 41.7 378 40-505 38-427 (445)
12 PRK10238 aromatic amino acid t 100.0 2.9E-48 6.3E-53 405.4 41.5 339 30-393 33-390 (456)
13 PRK10580 proY putative proline 100.0 3.1E-48 6.8E-53 406.1 41.4 403 19-506 19-447 (457)
14 PRK10836 lysine transporter; P 100.0 2.7E-48 5.8E-53 409.5 40.8 371 30-483 36-435 (489)
15 TIGR00905 2A0302 transporter, 100.0 5.1E-48 1.1E-52 406.0 40.7 420 8-511 6-441 (473)
16 TIGR01773 GABAperm gamma-amino 100.0 7E-48 1.5E-52 403.4 41.3 336 33-393 36-392 (452)
17 PRK10435 cadB lysine/cadaverin 100.0 1E-47 2.3E-52 399.4 41.0 383 38-514 33-432 (435)
18 TIGR00913 2A0310 amino acid pe 100.0 1.8E-47 4E-52 403.3 43.2 401 30-512 23-467 (478)
19 COG1113 AnsP Gamma-aminobutyra 100.0 9.1E-48 2E-52 377.5 34.5 391 34-510 38-454 (462)
20 COG0833 LysP Amino acid transp 100.0 2E-47 4.3E-52 382.7 36.1 403 25-510 61-501 (541)
21 PRK11049 D-alanine/D-serine/gl 100.0 8.7E-47 1.9E-51 396.0 41.7 335 34-393 45-403 (469)
22 PRK11021 putative transporter; 100.0 1.8E-46 4E-51 387.8 42.5 379 30-510 20-406 (410)
23 KOG1286 Amino acid transporter 100.0 1.7E-47 3.6E-52 397.7 34.7 472 23-511 45-553 (554)
24 TIGR00911 2A0308 L-type amino 100.0 3.6E-46 7.8E-51 395.1 43.5 384 36-503 69-467 (501)
25 KOG1287 Amino acid transporter 100.0 1.7E-46 3.6E-51 375.1 35.0 391 35-510 38-444 (479)
26 TIGR03810 arg_ornith_anti argi 100.0 5.6E-45 1.2E-49 382.5 42.2 388 34-507 26-432 (468)
27 TIGR00907 2A0304 amino acid pe 100.0 4.2E-44 9.2E-49 377.9 39.8 358 17-388 20-408 (482)
28 TIGR03428 ureacarb_perm permea 100.0 7.3E-44 1.6E-48 374.8 40.6 387 17-412 21-429 (475)
29 TIGR00930 2a30 K-Cl cotranspor 100.0 3.2E-43 7E-48 388.8 44.0 398 34-511 102-542 (953)
30 TIGR03813 put_Glu_GABA_T putat 100.0 4.5E-43 9.9E-48 368.9 42.3 377 25-417 14-413 (474)
31 KOG1289 Amino acid transporter 100.0 5.2E-43 1.1E-47 350.0 30.8 371 18-407 57-459 (550)
32 TIGR00910 2A0307_GadC glutamat 100.0 1.3E-41 2.9E-46 358.4 42.2 356 28-402 20-401 (507)
33 PF13520 AA_permease_2: Amino 100.0 1.4E-41 2.9E-46 354.2 35.4 338 36-394 24-380 (426)
34 COG0531 PotE Amino acid transp 100.0 3.9E-41 8.5E-46 355.0 38.2 337 42-394 45-394 (466)
35 PF00324 AA_permease: Amino ac 100.0 2.3E-44 5E-49 379.5 10.5 355 20-392 6-395 (478)
36 PRK15238 inner membrane transp 100.0 9.4E-39 2E-43 337.6 42.7 359 30-400 25-432 (496)
37 TIGR00837 araaP aromatic amino 100.0 5.3E-27 1.1E-31 240.5 32.5 320 37-386 23-353 (381)
38 KOG2082 K+/Cl- cotransporter K 99.9 9.9E-24 2.1E-28 214.5 22.0 406 34-515 138-653 (1075)
39 KOG1288 Amino acid transporter 99.9 2.6E-21 5.7E-26 195.6 23.7 349 34-395 91-477 (945)
40 TIGR00912 2A0309 spore germina 99.9 1.4E-19 2.9E-24 184.2 32.5 261 35-320 27-294 (359)
41 PHA02764 hypothetical protein; 99.8 6.9E-19 1.5E-23 163.9 21.6 273 5-342 2-285 (399)
42 TIGR00796 livcs branched-chain 99.8 3.2E-17 6.9E-22 164.3 32.3 322 36-395 20-360 (378)
43 KOG2083 Na+/K+ symporter [Inor 99.8 4.1E-18 8.9E-23 171.6 18.2 340 33-394 53-420 (643)
44 TIGR00814 stp serine transport 99.7 1.3E-14 2.9E-19 147.5 31.9 265 40-323 28-312 (397)
45 PF03222 Trp_Tyr_perm: Tryptop 99.7 1.9E-13 4.2E-18 139.3 33.6 273 29-320 20-303 (394)
46 PRK15132 tyrosine transporter 99.6 6.9E-12 1.5E-16 127.4 32.8 331 29-389 20-362 (403)
47 PRK09664 tryptophan permease T 99.6 1.1E-11 2.5E-16 125.1 32.9 335 25-388 22-373 (415)
48 PRK10483 tryptophan permease; 99.6 1.2E-11 2.6E-16 125.0 31.6 331 28-388 27-372 (414)
49 PF03845 Spore_permease: Spore 99.5 1.3E-11 2.8E-16 123.4 28.2 259 36-320 27-290 (320)
50 COG0814 SdaC Amino acid permea 99.5 5E-11 1.1E-15 122.5 31.0 264 25-306 22-299 (415)
51 PRK13629 threonine/serine tran 99.4 1.5E-09 3.2E-14 110.0 30.5 285 21-323 28-347 (443)
52 PF13906 AA_permease_C: C-term 99.2 3.7E-11 8.1E-16 82.8 5.8 51 460-510 1-51 (51)
53 COG3949 Uncharacterized membra 98.9 4.8E-06 1.1E-10 79.9 29.2 249 36-315 27-282 (349)
54 PF01235 Na_Ala_symp: Sodium:a 98.9 3.2E-07 7E-12 92.7 20.9 321 29-388 37-390 (416)
55 PRK11375 allantoin permease; P 98.7 0.00037 8.1E-09 73.4 38.5 293 43-359 61-365 (484)
56 TIGR00835 agcS amino acid carr 98.7 9E-06 2E-10 82.8 24.7 314 34-388 70-416 (425)
57 PLN03074 auxin influx permease 98.7 2.7E-05 5.9E-10 81.6 29.1 65 206-271 230-294 (473)
58 COG1115 AlsT Na+/alanine sympo 98.5 0.00014 3E-09 73.2 27.0 263 34-322 86-382 (452)
59 COG1457 CodB Purine-cytosine p 98.5 0.0026 5.6E-08 65.1 35.5 238 43-315 53-294 (442)
60 KOG1303 Amino acid transporter 98.4 8.2E-05 1.8E-09 76.5 24.4 315 45-386 72-398 (437)
61 PTZ00206 amino acid transporte 98.3 0.00074 1.6E-08 71.1 29.2 224 34-271 82-319 (467)
62 KOG1304 Amino acid transporter 98.3 0.00022 4.8E-09 72.4 23.8 319 34-388 69-413 (449)
63 PF05525 Branch_AA_trans: Bran 98.3 0.0027 5.8E-08 65.0 30.2 215 146-376 117-345 (427)
64 PRK11017 codB cytosine permeas 98.1 0.017 3.8E-07 59.6 38.4 184 43-254 43-228 (404)
65 COG1953 FUI1 Cytosine/uracil/t 98.1 0.018 3.9E-07 59.3 32.5 388 43-457 75-492 (497)
66 PRK09442 panF sodium/panthothe 97.9 0.042 9.2E-07 58.2 38.3 232 58-316 94-345 (483)
67 TIGR00800 ncs1 NCS1 nucleoside 97.9 0.047 1E-06 57.2 32.1 203 43-262 48-260 (442)
68 PF01566 Nramp: Natural resist 97.8 0.03 6.4E-07 56.9 28.6 49 274-322 236-285 (358)
69 PF01490 Aa_trans: Transmembra 97.8 1.5E-06 3.3E-11 90.1 -3.5 332 34-392 25-377 (409)
70 TIGR02121 Na_Pro_sym sodium/pr 97.7 0.11 2.3E-06 55.3 37.3 219 74-317 104-345 (487)
71 TIGR02119 panF sodium/pantothe 97.7 0.11 2.3E-06 55.0 36.9 233 59-317 94-345 (471)
72 PRK15433 branched-chain amino 97.5 0.15 3.2E-06 52.5 30.5 171 146-319 121-307 (439)
73 PF02705 K_trans: K+ potassium 97.5 0.14 3.1E-06 53.8 27.8 225 149-387 134-376 (534)
74 PRK00701 manganese transport p 97.5 0.17 3.7E-06 52.7 34.9 65 49-113 68-133 (439)
75 TIGR02358 thia_cytX probable h 97.4 0.2 4.3E-06 51.4 37.3 200 42-267 29-230 (386)
76 TIGR00813 sss transporter, SSS 97.4 0.22 4.8E-06 51.5 31.3 238 54-318 48-322 (407)
77 PF00474 SSF: Sodium:solute sy 97.3 0.024 5.2E-07 58.7 19.7 238 55-318 52-320 (406)
78 COG1114 BrnQ Branched-chain am 96.9 0.58 1.2E-05 47.2 28.4 170 145-316 118-302 (431)
79 PF02028 BCCT: BCCT family tra 96.7 0.97 2.1E-05 47.5 33.9 224 149-386 221-481 (485)
80 COG0733 Na+-dependent transpor 96.7 0.96 2.1E-05 46.3 31.0 156 149-310 146-323 (439)
81 KOG1305 Amino acid transporter 96.5 0.12 2.6E-06 53.1 16.5 63 209-271 194-257 (411)
82 TIGR00794 kup potassium uptake 96.4 0.24 5.2E-06 53.6 18.3 221 148-379 169-404 (688)
83 PF02133 Transp_cyt_pur: Perme 96.3 0.24 5.2E-06 51.8 17.9 136 43-189 43-179 (440)
84 PRK15419 proline:sodium sympor 96.2 2.2 4.7E-05 45.5 36.8 43 275-317 310-352 (502)
85 PLN00149 potassium transporter 96.2 0.32 6.9E-06 53.2 17.8 221 149-377 200-435 (779)
86 PRK10484 putative transporter; 96.0 2.8 6E-05 45.0 41.3 82 235-317 270-354 (523)
87 COG4147 DhlC Predicted symport 95.8 2.7 5.9E-05 43.2 30.9 297 39-372 74-423 (529)
88 PRK10745 trkD potassium transp 95.8 0.55 1.2E-05 50.1 17.3 217 148-378 144-377 (622)
89 COG0591 PutP Na+/proline sympo 95.8 3.4 7.4E-05 43.9 36.5 67 52-120 85-152 (493)
90 PRK12488 acetate permease; Pro 95.7 3.7 8.1E-05 44.3 36.3 60 59-120 117-177 (549)
91 TIGR02711 symport_actP cation/ 95.7 3.9 8.4E-05 44.1 32.4 61 58-120 116-177 (549)
92 PLN00148 potassium transporter 95.4 0.56 1.2E-05 51.3 15.8 215 149-374 199-428 (785)
93 PLN00151 potassium transporter 95.2 0.54 1.2E-05 51.5 15.0 220 148-378 275-509 (852)
94 PLN00150 potassium ion transpo 95.2 0.45 9.8E-06 52.0 14.4 218 149-377 216-448 (779)
95 COG1914 MntH Mn2+ and Fe2+ tra 95.1 4.8 0.0001 41.4 34.2 67 52-118 54-121 (416)
96 PRK09950 putative transporter; 95.1 5.6 0.00012 42.1 28.8 88 278-373 390-479 (506)
97 PRK09928 choline transport pro 94.6 8.7 0.00019 42.0 27.8 101 278-385 397-500 (679)
98 TIGR03648 Na_symport_lg probab 92.6 18 0.00038 39.2 31.0 62 57-120 80-142 (552)
99 TIGR03813 put_Glu_GABA_T putat 92.5 3.4 7.5E-05 43.6 15.1 61 449-509 381-458 (474)
100 TIGR00842 bcct choline/carniti 92.0 17 0.00038 37.9 28.6 89 278-373 344-433 (453)
101 PRK15238 inner membrane transp 91.5 8.4 0.00018 41.0 16.7 12 335-346 239-250 (496)
102 PRK09395 actP acetate permease 91.1 25 0.00055 37.9 39.7 46 75-120 133-179 (551)
103 KOG1286 Amino acid transporter 90.8 26 0.00057 37.7 20.8 52 143-194 151-202 (554)
104 COG3158 Kup K+ transporter [In 89.0 17 0.00037 38.4 15.2 228 148-388 149-393 (627)
105 PRK03356 L-carnitine/gamma-but 87.3 44 0.00095 35.5 29.3 100 278-385 393-496 (504)
106 COG4145 PanF Na+/panthothenate 83.4 53 0.0011 33.1 25.6 216 75-316 107-343 (473)
107 COG1292 BetT Choline-glycine b 76.3 1.1E+02 0.0024 32.5 29.6 87 294-388 406-496 (537)
108 PF05297 Herpes_LMP1: Herpesvi 74.8 0.96 2.1E-05 42.7 0.0 18 333-350 13-30 (381)
109 COG3949 Uncharacterized membra 68.5 1.3E+02 0.0028 29.9 18.6 69 247-318 39-107 (349)
110 TIGR01197 nramp NRAMP (natural 67.5 1.5E+02 0.0033 30.4 35.4 53 279-332 282-334 (390)
111 PRK10655 potE putrescine trans 66.4 1.5E+02 0.0033 30.7 14.4 53 465-517 384-436 (438)
112 PF14256 YwiC: YwiC-like prote 60.7 1E+02 0.0022 26.0 11.0 44 347-390 9-52 (129)
113 COG1294 AppB Cytochrome bd-typ 60.6 1.9E+02 0.0041 29.1 15.1 30 364-394 167-196 (346)
114 COG0109 CyoE Polyprenyltransfe 59.7 1.4E+02 0.0031 29.2 11.3 64 316-379 68-138 (304)
115 COG4025 Predicted membrane pro 58.9 70 0.0015 29.8 8.4 15 314-328 56-70 (284)
116 PF00209 SNF: Sodium:neurotran 57.7 2.7E+02 0.0058 29.9 19.0 98 159-259 192-299 (523)
117 PTZ00206 amino acid transporte 57.4 1.9E+02 0.0042 30.4 13.1 56 277-332 121-176 (467)
118 PRK10580 proY putative proline 48.2 2.7E+02 0.0058 29.1 12.5 66 447-513 379-451 (457)
119 PHA02898 virion envelope prote 44.4 96 0.0021 24.0 5.9 21 490-510 53-73 (92)
120 COG2271 UhpC Sugar phosphate p 43.1 3.6E+02 0.0079 28.0 11.6 28 303-330 68-95 (448)
121 KOG2466 Uridine permease/thiam 42.7 4.3E+02 0.0094 27.9 16.5 213 105-333 149-381 (572)
122 PHA03048 IMV membrane protein; 41.3 1.1E+02 0.0023 23.8 5.7 33 490-522 52-86 (93)
123 PRK10746 putative transport pr 39.9 4E+02 0.0086 28.0 12.2 69 446-515 381-455 (461)
124 PRK00968 tetrahydromethanopter 38.8 40 0.00087 30.8 3.7 32 232-263 204-236 (240)
125 TIGR00909 2A0306 amino acid tr 38.1 4.6E+02 0.01 26.9 15.8 26 456-481 377-402 (429)
126 PHA03049 IMV membrane protein; 33.4 1.1E+02 0.0023 22.4 4.4 21 494-514 12-32 (68)
127 PRK10836 lysine transporter; P 33.3 6E+02 0.013 26.8 13.0 41 446-486 392-435 (489)
128 PF03595 SLAC1: Voltage-depend 32.8 4.9E+02 0.011 25.6 11.7 13 467-479 141-153 (330)
129 COG3872 Predicted metal-depend 32.0 3.3E+02 0.0071 26.0 8.5 33 238-270 97-129 (318)
130 PHA02902 putative IMV membrane 31.9 81 0.0018 22.8 3.5 22 491-512 10-31 (70)
131 PRK15028 cytochrome bd-II oxid 31.8 1.6E+02 0.0035 30.0 7.2 20 368-387 172-191 (378)
132 PF11998 DUF3493: Protein of u 31.6 2.3E+02 0.005 21.5 6.2 41 227-267 5-45 (75)
133 PF01102 Glycophorin_A: Glycop 31.3 42 0.00091 28.1 2.5 18 495-513 79-96 (122)
134 TIGR01478 STEVOR variant surfa 31.1 75 0.0016 30.6 4.3 9 447-455 281-289 (295)
135 PF07760 DUF1616: Protein of u 30.5 5.2E+02 0.011 25.2 12.5 35 431-465 88-122 (287)
136 COG4060 MtrD Tetrahydromethano 29.9 66 0.0014 28.3 3.5 32 232-263 194-226 (230)
137 PF13687 DUF4153: Domain of un 29.7 4.5E+02 0.0098 24.3 11.2 14 490-503 162-175 (217)
138 PRK10532 threonine and homoser 29.7 5.3E+02 0.011 25.0 12.5 43 463-505 240-282 (293)
139 PRK15132 tyrosine transporter 29.2 6.5E+02 0.014 25.9 16.0 15 457-471 365-379 (403)
140 PF05393 Hum_adeno_E3A: Human 28.8 79 0.0017 24.5 3.3 29 436-464 41-69 (94)
141 PF12263 DUF3611: Protein of u 28.7 4.4E+02 0.0096 23.8 9.1 18 170-187 22-39 (183)
142 PF06027 DUF914: Eukaryotic pr 28.7 3.6E+02 0.0079 27.0 9.0 21 489-509 290-310 (334)
143 TIGR00947 2A73 probable bicarb 28.1 6.9E+02 0.015 25.9 14.4 43 339-381 65-107 (425)
144 PHA02681 ORF089 virion membran 27.9 1.2E+02 0.0025 23.2 4.0 23 487-509 6-28 (92)
145 COG3086 RseC Positive regulato 26.7 1E+02 0.0022 26.5 4.0 51 465-515 81-134 (150)
146 PHA02680 ORF090 IMV phosphoryl 25.6 3.2E+02 0.007 21.2 6.4 21 490-510 54-74 (91)
147 TIGR00816 tdt C4-dicarboxylate 25.4 6.6E+02 0.014 24.7 13.6 11 460-470 131-141 (320)
148 TIGR00930 2a30 K-Cl cotranspor 25.0 1.1E+03 0.025 27.4 14.8 58 456-517 487-545 (953)
149 PF14007 YtpI: YtpI-like prote 24.9 82 0.0018 24.7 2.9 29 482-511 54-82 (89)
150 PF11174 DUF2970: Protein of u 24.8 1.7E+02 0.0037 20.8 4.2 26 213-238 3-28 (56)
151 PF02009 Rifin_STEVOR: Rifin/s 24.7 41 0.0009 33.0 1.5 31 489-519 263-293 (299)
152 PF05961 Chordopox_A13L: Chord 24.5 1.8E+02 0.0039 21.4 4.3 19 494-512 12-30 (68)
153 PF03169 OPT: OPT oligopeptide 24.5 9.6E+02 0.021 26.3 18.9 55 212-266 434-490 (624)
154 PRK10764 potassium-tellurite e 23.9 7.2E+02 0.016 24.6 13.3 6 338-343 7-12 (324)
155 PF09991 DUF2232: Predicted me 23.6 6.5E+02 0.014 24.0 19.6 93 295-392 161-259 (290)
156 PF12273 RCR: Chitin synthesis 23.5 1.1E+02 0.0025 25.7 3.9 16 444-459 18-33 (130)
157 TIGR00913 2A0310 amino acid pe 23.3 7.2E+02 0.016 26.0 10.9 28 390-417 398-425 (478)
158 PF11044 TMEMspv1-c74-12: Plec 23.2 30 0.00065 22.8 0.2 10 494-503 18-27 (49)
159 PF07213 DAP10: DAP10 membrane 21.5 3.8E+02 0.0081 20.5 6.9 32 491-522 44-75 (79)
160 TIGR03810 arg_ornith_anti argi 21.4 9.4E+02 0.02 25.1 27.7 54 207-260 196-249 (468)
161 TIGR01695 mviN integral membra 20.7 9.7E+02 0.021 25.0 16.7 17 489-505 472-488 (502)
162 PF04238 DUF420: Protein of un 20.6 5.3E+02 0.012 21.9 8.4 17 378-394 18-34 (133)
163 PF12606 RELT: Tumour necrosis 20.6 1.8E+02 0.004 20.1 3.6 10 504-513 26-35 (50)
No 1
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=100.00 E-value=1.5e-61 Score=513.79 Aligned_cols=469 Identities=35% Similarity=0.609 Sum_probs=379.3
Q ss_pred cCCCChHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCchhhhhHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009714 37 ATPVQVRVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVV 116 (528)
Q Consensus 37 ~~~~G~~~~l~~~l~~l~~~~~a~~~ael~~~~P~~~Gg~y~~~~~~~g~~~gf~~gw~~~l~~~~~~a~~~~~~~~~~~ 116 (528)
.+.+||+++++|+++++.+++.+++|+|+++++|+ +||.|.|+++.+||.+||++||.++++|....+..+..++.|+.
T Consensus 57 ~~~aGp~~~ls~liagv~~l~~al~yaElas~~P~-sGg~Y~y~~~~~G~~~gfi~GW~~~l~~~~~~a~va~~~s~yl~ 135 (557)
T TIGR00906 57 RNDSGPAIVLSFLISGLAAVLSGFCYAEFGARVPK-AGSAYLYSYVTVGELWAFITGWNLILEYVIGTAAVARSWSAYFD 135 (557)
T ss_pred HhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCcceeeHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999999999999999999999 99999999999999999999999999999999999999999998
Q ss_pred HHHhh-cccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 009714 117 SILEL-FPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEV 195 (528)
Q Consensus 117 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ln~~g~~~~~~~~~i~~~~~i~~l~~~~i~~~~~~ 195 (528)
.+++. ...+... ..... ++.. .....+++.+++++.+.+|.+|+|..+++|++++.+|++.++++++.++.+.
T Consensus 136 ~ll~~~~~~~~~~---~~~~~-~~~l--~~~~~~~a~~ii~l~~~ln~~Gik~s~~v~~i~~~iki~~l~~~iv~g~~~~ 209 (557)
T TIGR00906 136 ELLNKQIGQFRRT---YFKLN-YDGL--AEYPDFFAVCLILLLAVLLSFGVKESAWVNKIFTAINILVLLFVIIAGFTKA 209 (557)
T ss_pred HHHhhhccccccc---ccccc-CCcc--cccchHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHhhhHHHhhC
Confidence 87652 1111100 00000 0000 1123456777888889999999999999999999999999999999988877
Q ss_pred cccCCC--------CCCCCChHHHHHHHHHHHHhhhhhHHHhhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhc
Q 009714 196 DVSNWS--------PFAPNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGM 267 (528)
Q Consensus 196 ~~~~~~--------~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~k~p~k~ip~ai~~s~~~~~i~y~l~~~~~~~~ 267 (528)
+.+||. ++.|.++.+++.+...++|+|.|||.+++++||+|||+||+||++..++++++++|++.+++..+.
T Consensus 210 ~~~~~~~~~~~~~~~f~p~g~~g~l~g~~~~~faf~Gfd~v~~~aeE~knP~r~iP~aii~sl~i~~vlY~lv~~~l~~~ 289 (557)
T TIGR00906 210 DVANWSITEEKGAGGFMPYGFTGVLSGAATCFFAFIGFDAIATTGEEVKNPQRAIPIGIVTSLLVCFVAYFLMSAALTLM 289 (557)
T ss_pred CchhccccccccCCCCCCcchHHHHHHHHHHHHHHhhHHHHHHhHHhccCccccccHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 777776 677888889999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCcHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCCCCchhhhhhcCCcccchHHHHH
Q 009714 268 VPYKFLDEDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVW 347 (528)
Q Consensus 268 ~~~~~~~~~~p~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~~~~~n~r~~~P~~a~l~ 347 (528)
.|++++++++|+.++++..+.++...++.++.+++.+++.++.+++.+|++++|||||.+|++|+|+|||+++|++|+++
T Consensus 290 vp~~~l~~~~p~~~a~~~~g~~~~~~ii~~~~~~~~~~sl~~~~~~~sRil~amarDGlLP~~fakv~~r~~tP~~Ail~ 369 (557)
T TIGR00906 290 MPYYLLDPDAPFPVAFEYVGWGPAKYIVAVGALCGMSTSLLGGMFPLPRVIYAMARDGLLFKWLAQINSKTKTPINATVV 369 (557)
T ss_pred ccHHHhCcCcHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccHHHhccCCCCCCcHHHHHH
Confidence 99998888899999999888888889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCcc-------------------cccc-cchhh
Q 009714 348 VGIVAGILAGLFNVRVLSHILSVGTLTGYSVVSACVIALRWKDRTSRNDSS-------------------RLTS-AWRQG 407 (528)
Q Consensus 348 ~~~i~~~~~~~~~~~~l~~~~~~~~l~~y~~~~~~~~~~r~~~~~~~~~~~-------------------~~~~-~~~~~ 407 (528)
.++++.++.++.+.+.+.++.+++.++.|.+++.+++++|++++...+++. ...+ .....
T Consensus 370 ~~iv~~il~~~~~~~~l~~l~sig~ll~y~lv~~~~l~lR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (557)
T TIGR00906 370 SGAIAALMAFLFDLKALVDLLSIGTLLAYSLVAACVLILRYQPGLVYGQAKDTDEKDTLDSWVPFTSKSESQSEGFSLRT 449 (557)
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccccccccccccccccccchhHHH
Confidence 999998888888999999999999999999999999999987632211110 0000 00001
Q ss_pred HHHHHHHHHhhhhcchhh--ccchhHHHHHHHHHHHHHHHHHHHhhcCC-CCCCCCCCCccchhHHHHHHHHHHHHhcCC
Q 009714 408 VICLIIIACCGFGAGLFY--RINASYILLIVAVVIAVLASAMLCLRHGY-SDPPGFSCPGVPLLPAVSIFFNLFLFAQLH 484 (528)
Q Consensus 408 i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~ 484 (528)
..+...+..+........ ..+++...+.+..++..+......++|++ +.+++||+|..|++|+++++.|++++.+++
T Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~p~~p~~p~~~i~~~~~l~~~l~ 529 (557)
T TIGR00906 450 LFSGLILGLSILTTYGRAAIAEEAWSIALLTLFLVLFLLVVLTIWRQPQNKQKVAFKVPLVPFLPALSILINIFLMVQLD 529 (557)
T ss_pred HHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHcCC
Confidence 112222222211111111 11222222222222222333333344433 348899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccccCC
Q 009714 485 YEAWWRFVILSFISIGLYAFYGQYHADP 512 (528)
Q Consensus 485 ~~~~~~~~~~~~~g~~~y~~~~~~~~~~ 512 (528)
..+|..+.+|+++|+++|+.|++||+++
T Consensus 530 ~~~~~~~~~w~~~g~~~y~~yg~~~s~~ 557 (557)
T TIGR00906 530 ADTWVRFAIWMAIGFLIYFLYGIRHSLE 557 (557)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhccCC
Confidence 9999999999999999999999999874
No 2
>PRK15049 L-asparagine permease; Provisional
Probab=100.00 E-value=1.5e-50 Score=425.95 Aligned_cols=388 Identities=19% Similarity=0.320 Sum_probs=313.4
Q ss_pred ccccCCCChHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCchhhhhHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009714 34 PWLATPVQVRVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLAS 113 (528)
Q Consensus 34 ~~~~~~~G~~~~l~~~l~~l~~~~~a~~~ael~~~~P~~~Gg~y~~~~~~~g~~~gf~~gw~~~l~~~~~~a~~~~~~~~ 113 (528)
+...+.+||..+++|+++++++++.+.+++||++++|+ +||.|+|++|.+||.+||.+||.+|++|....+......+.
T Consensus 53 g~~~~~aGp~~il~~li~~i~~~~v~~slaELas~~P~-aGg~y~y~~~~~G~~~gf~~GW~~~l~~~~~~~~~~~a~~~ 131 (499)
T PRK15049 53 GARLQMAGPALALVYLICGLFSFFILRALGELVLHRPS-SGSFVSYAREFLGEKAAYVAGWMYFINWAMTGIVDITAVAL 131 (499)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCCHHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44667889999999999999999999999999999999 99999999999999999999999999998766666655566
Q ss_pred HHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 009714 114 YVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAF 193 (528)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ln~~g~~~~~~~~~i~~~~~i~~l~~~~i~~~~ 193 (528)
+...+ +.+ ...+.| +.+.+++++.+.+|++|+|..+++|++++.+|++.++.+++.+..
T Consensus 132 ~~~~~----~~~-~~~~~~----------------~~~~~~~~l~~~iN~~gvk~~~~i~~~~~~iki~~l~~~ii~~i~ 190 (499)
T PRK15049 132 YMHYW----GAF-GGVPQW----------------VFALAALTIVGTMNMIGVKWFAEMEFWFALIKVLAIVTFLVVGTV 190 (499)
T ss_pred HHHHh----ccC-CCCcHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55432 111 112223 367778888999999999999999999999998888777666543
Q ss_pred c---cc-----ccCC------CCCCCCChHHHHHHHHHHHHhhhhhHHHhhhhhhhcCCCCchhHHHHHHHHHHHHHHHH
Q 009714 194 E---VD-----VSNW------SPFAPNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVG 259 (528)
Q Consensus 194 ~---~~-----~~~~------~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~k~p~k~ip~ai~~s~~~~~i~y~l 259 (528)
. .+ ..++ .++.|+++.+++.++...+|+|.|+|.+++++||+|||+||+|||+..++..+.++|++
T Consensus 191 ~~~~~~~~~~~~~~f~~~~~~~~~~p~g~~~~~~~~~~~~faf~G~e~i~~~aeE~knP~r~iPrAi~~~~~~i~~~yi~ 270 (499)
T PRK15049 191 FLGSGQPLDGNTTGFHLITDNGGFFPHGLLPALVLIQGVVFAFASIEMVGTAAGECKDPQTMVPKAINSVIWRIGLFYVG 270 (499)
T ss_pred HHhCCCCCCCCCcccccccCCCCcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHH
Confidence 1 11 0011 23456677777888888999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccccccCC-CCcHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCCCCchhhhhhcCCc
Q 009714 260 VSLVLTGMVPYKFLD-EDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKR 338 (528)
Q Consensus 260 ~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~~~~~n~r~ 338 (528)
.........|.++++ +++|+.++++..+.++...++.+..+++.+++.|+.+++.||++++|||||.+|++|+|+| |+
T Consensus 271 ~~~~~~~~~p~~~~~~~~sP~~~~~~~~g~~~~~~ii~~~ilia~~ss~ns~~~~~sR~l~a~Ardg~lP~~f~kv~-k~ 349 (499)
T PRK15049 271 SVVLLVMLLPWSAYQAGQSPFVTFFSKLGVPYIGSIMNIVVLTAALSSLNSGLYCTGRILRSMAMGGSAPSFMAKMS-RQ 349 (499)
T ss_pred HHHHHheecchhccCcCCCHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHhC-CC
Confidence 999999999988774 4689999999999999999999999999999999999999999999999999999999999 88
Q ss_pred ccchHHHHHHHHHHHHHHHhh------CHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCcccccccchhhHHHHH
Q 009714 339 HTPVHSQVWVGIVAGILAGLF------NVRVLSHILSVGTLTGYSVVSACVIALRWKDRTSRNDSSRLTSAWRQGVICLI 412 (528)
Q Consensus 339 ~~P~~a~l~~~~i~~~~~~~~------~~~~l~~~~~~~~l~~y~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~~~~ 412 (528)
++|++|++++.++..+..++. .++.+.++.++..++.|.+++++.+++|++.++.+
T Consensus 350 ~~P~~Ail~~~~i~~l~~~l~~~~~~~~f~~l~~~~~~~~li~y~~~~~~~l~~R~~~~~~~------------------ 411 (499)
T PRK15049 350 HVPYAGILATLVVYVVGVFLNYLVPSRVFEIVLNFASLGIIASWAFIIVCQMRLRKAIKEGK------------------ 411 (499)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC------------------
Confidence 999999998887755432221 25778888899999999999999999987644321
Q ss_pred HHHHhhhhcchhhccchhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCccchhHHHHHHHHHHHHhcC--C-H-H--
Q 009714 413 IIACCGFGAGLFYRINASYILLIVAVVIAVLASAMLCLRHGYSDPPGFSCPGVPLLPAVSIFFNLFLFAQL--H-Y-E-- 486 (528)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~--~-~-~-- 486 (528)
+++++||.|..|+.++++++.+++.+..+ + + .
T Consensus 412 ------------------------------------------~~~~pf~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~ 449 (499)
T PRK15049 412 ------------------------------------------AADVSFKLPGAPFTSWLTLLFLLSVLVLMAFDYPNGTY 449 (499)
T ss_pred ------------------------------------------CCCCCCcccCccHHHHHHHHHHHHHHHHHHHcCcchHH
Confidence 12678999999999999988877654321 2 2 2
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 009714 487 AWWRFVILSFISIGLYAF 504 (528)
Q Consensus 487 ~~~~~~~~~~~g~~~y~~ 504 (528)
+.....++.++..+.|+.
T Consensus 450 ~~~~~~~~~~~~~~~~~~ 467 (499)
T PRK15049 450 TIAALPIIGILLVIGWFG 467 (499)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 233344445555555654
No 3
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=100.00 E-value=9.6e-51 Score=424.06 Aligned_cols=389 Identities=24% Similarity=0.383 Sum_probs=326.6
Q ss_pred ccCCCCh-HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCchhhhhHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009714 36 LATPVQV-RVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASY 114 (528)
Q Consensus 36 ~~~~~G~-~~~l~~~l~~l~~~~~a~~~ael~~~~P~~~Gg~y~~~~~~~g~~~gf~~gw~~~l~~~~~~a~~~~~~~~~ 114 (528)
....+|| +.++++++++++.++.+++|+|+++++|+ +||.|.|+++.+||..||.+||.+++++....+..+..+++|
T Consensus 33 ~~~~~G~~~~~~~~~i~~~~~~~~a~~~aEl~s~~P~-~Gg~y~~~~~~~G~~~gf~~gw~~~~~~~~~~~~~a~~~~~~ 111 (442)
T TIGR00908 33 GLAQGGWGGFVVATLLVATMYLTFCFSLAELSTMIPT-AGGGYGFARRAFGPWGGFLAGTAILIEFAFAPPAIACFIGAY 111 (442)
T ss_pred HHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCCHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445777 68899999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 009714 115 VVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFE 194 (528)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ln~~g~~~~~~~~~i~~~~~i~~l~~~~i~~~~~ 194 (528)
+..+++. .+.| +.+++++++++.+|++|+|..+++|++.+.++++.+++++..+..+
T Consensus 112 l~~~~p~-------~~~~----------------~~~~~~~~~~~~ln~~g~~~~~~i~~~~~~~~~~~l~i~~~~~~~~ 168 (442)
T TIGR00908 112 CESLFPV-------GPGW----------------LAALVFYIVFIGINILGVGEAAKLEFVVTAVAIIALGVFIGAMVPH 168 (442)
T ss_pred HHHHhcc-------Cchh----------------HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcc
Confidence 8776421 1222 3677778888999999999999999999999988776665544433
Q ss_pred ccccCC--------CCCCCCChHHHHHHHHHHHHhhhhhHHHhhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 009714 195 VDVSNW--------SPFAPNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTG 266 (528)
Q Consensus 195 ~~~~~~--------~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~k~p~k~ip~ai~~s~~~~~i~y~l~~~~~~~ 266 (528)
.+..++ +++.|+++.+++.++..++|+|.|+|.+++++||+|||+||+||++..+..++.++|+.......+
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r~iprai~~s~~~~~~~~~~~~~~~~g 248 (442)
T TIGR00908 169 FDSANLFNGPQTGASSFLPGAYVGVFAAIPFAIWFFLAVEGVAMAAEETKNPKRDIPRGLIGAILTLLALAAGILVVGPG 248 (442)
T ss_pred CCHHHhccCCccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 222221 234556677889999999999999999999999999999999999999999999999988887777
Q ss_pred ccccccC-CCCcHHHHHHHHcCh--hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCCCCchhhhhhcCCcccchH
Q 009714 267 MVPYKFL-DEDAPLSDAFASRGL--KYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVH 343 (528)
Q Consensus 267 ~~~~~~~-~~~~p~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~~~~~n~r~~~P~~ 343 (528)
..+.+++ ++++|+.++++...+ .+...++.+..+++.+++.++.+++.||++++|||||.+|++|+|+| |+|+|++
T Consensus 249 ~~~~~~l~~~~~p~~~~~~~~~g~~~~~~~~i~~~~~~~~~~s~~~~~~~~sR~l~a~ardg~lP~~~~~~~-~~~~P~~ 327 (442)
T TIGR00908 249 AADAKELMGSNNPLPEALESIYGGSTWMSQFVNLVGLFGLIASFHGIIYGYSRQIFALSRAGYLPESLSKVN-RKKAPVL 327 (442)
T ss_pred CCCHHHhCCCcchHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHhC-CCCCcHH
Confidence 7776666 456799998887633 35566777778888899999999999999999999999999999999 9999999
Q ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCcccccccchhhHHHHHHHHHhhhhcch
Q 009714 344 SQVWVGIVAGILAGLFNVRVLSHILSVGTLTGYSVVSACVIALRWKDRTSRNDSSRLTSAWRQGVICLIIIACCGFGAGL 423 (528)
Q Consensus 344 a~l~~~~i~~~~~~~~~~~~l~~~~~~~~l~~y~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 423 (528)
|++++.+++.++.+..+.+.+.++.++..++.|.+.+.+.+++|+++|+.
T Consensus 328 Ail~~~~i~~~~~l~~~~~~l~~~~~~~~~~~y~~~~~a~i~lr~~~p~~------------------------------ 377 (442)
T TIGR00908 328 AIVVPGVIGFGLSLTGQTALIILVSVFGAIISYVLSMAAHFTLRIRRPDM------------------------------ 377 (442)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC------------------------------
Confidence 99999999888777767778888888899999999999999999887765
Q ss_pred hhccchhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCccchhHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHHHH
Q 009714 424 FYRINASYILLIVAVVIAVLASAMLCLRHGYSDPPGFSCPGVPLLPAVSIFFNLFLFAQ---LHYEAWWRFVILSFISIG 500 (528)
Q Consensus 424 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~ 500 (528)
+|+||.|..|+.|+++++.+++.+.. .+++.+....++.++..+
T Consensus 378 ---------------------------------~rp~~~p~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 424 (442)
T TIGR00908 378 ---------------------------------ERPYRTPGGILTPGVALVLACVALVTGFYVDPRVVVGAVAIFVVLIG 424 (442)
T ss_pred ---------------------------------CCCccCCCcchHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHH
Confidence 67899999999999999998877654 366666666777777777
Q ss_pred HHHhhcccccCC
Q 009714 501 LYAFYGQYHADP 512 (528)
Q Consensus 501 ~y~~~~~~~~~~ 512 (528)
.|+.|+|+|+++
T Consensus 425 ~~~l~~~~~~~~ 436 (442)
T TIGR00908 425 YYFLYSRHHLVS 436 (442)
T ss_pred HHHhhhhchhhc
Confidence 888776666555
No 4
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=100.00 E-value=6.3e-51 Score=425.58 Aligned_cols=421 Identities=21% Similarity=0.292 Sum_probs=331.7
Q ss_pred cccccCCCcCccccccccccccccccccCcccccCCCCh--HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCchhhhhH
Q 009714 4 KDFYGGSDSSNWCSSASARLLAPEYSLSPVPWLATPVQV--RVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAY 81 (528)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~--~~~l~~~l~~l~~~~~a~~~ael~~~~P~~~Gg~y~~~~ 81 (528)
++++| +-+.........|.+-+...+...+...+.+|+ ..+++|+++++++++.+++|+|+++++|+ +||.|.|++
T Consensus 4 ~~L~r-~l~~~~~~~l~vg~~ig~Gif~~~g~~~~~~G~~~~~~l~~li~~v~~l~~al~~aEl~s~~P~-~GG~y~y~~ 81 (445)
T PRK11357 4 QELQR-KLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAELSTAYPE-NGADYVYLK 81 (445)
T ss_pred ccccc-cccHHHHHHHHHHhheechhccchHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CCCceeeHH
Confidence 44444 333333334444444333333444444444554 48999999999999999999999999999 999999999
Q ss_pred HHhchhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHH
Q 009714 82 TAFNELTAFLVFAQLM-LDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTI 160 (528)
Q Consensus 82 ~~~g~~~gf~~gw~~~-l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 160 (528)
+.+||.+||.++|..+ .......+..+...++|+..+. |. + ......++.++..+++.
T Consensus 82 ~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~---~~-----~-------------~~~~~~~~~~~~~~~~~ 140 (445)
T PRK11357 82 NAGSRPLAFLSGWASFWANDAPSLSIMALAIVSNLGFLT---PI-----D-------------PLLGKFIAAGLIIAFML 140 (445)
T ss_pred HhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CC-----c-------------hHHHHHHHHHHHHHHHH
Confidence 9999999999999744 4455566777777777766432 10 0 11223466777778899
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCC-----CCC-hHHHHHHHHHHHHhhhhhHHHhhhhhh
Q 009714 161 VLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSPFA-----PNG-FKEILTGATVVFFAYVGFDAVANSAEE 234 (528)
Q Consensus 161 ln~~g~~~~~~~~~i~~~~~i~~l~~~~i~~~~~~~~~~~~~~~-----~~~-~~~~~~~~~~~~~~f~G~e~~~~~a~E 234 (528)
+|.+|+|..+++|++++.+|+++++++++.++...+.+++++.. ..+ +.++..++..++|+|.|||.+++++||
T Consensus 141 ln~~gv~~~~~v~~~~~~~~~~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~af~G~e~~~~~a~E 220 (445)
T PRK11357 141 LHLRSVEGGAAFQTLITIAKIIPFTIVIGLGIFWFKAENFAAPTTTAIGATGSFMALLAGISATSWSYTGMASICYMTGE 220 (445)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCcccccccchHHHHHHHHHHHHHHHhhHHHHHhhHHH
Confidence 99999999999999999999998888777765433333332111 112 557888889999999999999999999
Q ss_pred hcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhccccccCC-CCcHHHHHHHHc--ChhHHHHHHHHHHHHHHHHHHHHHH
Q 009714 235 SKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLD-EDAPLSDAFASR--GLKYVSVLISFGAVAGLTTTLLVGL 311 (528)
Q Consensus 235 ~k~p~k~ip~ai~~s~~~~~i~y~l~~~~~~~~~~~~~~~-~~~p~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~ 311 (528)
+|||+||+|||+..++.++.++|++.+.......|.|+++ +++|+.++++.. .++....++.+..+++.+++.++.+
T Consensus 221 ~k~P~r~iP~Ai~~~~~i~~~~Y~l~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 300 (445)
T PRK11357 221 IKNPGKTMPRALIGSCLLVLVLYTLLALVISGLMPFDKLANSETPISDALTWIPALGSTAGIFVAITAMIVILGSLSSCV 300 (445)
T ss_pred hcCccccchHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhcCCchHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998888888764 467888888764 4555666777788889999999999
Q ss_pred HhHHHHHHHhhcCCCCchhhhhhcCCcccchHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC
Q 009714 312 YVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLFNVRVLSHILSVGTLTGYSVVSACVIALRWKDR 391 (528)
Q Consensus 312 ~~~sR~l~a~a~dg~lP~~~~~~n~r~~~P~~a~l~~~~i~~~~~~~~~~~~l~~~~~~~~l~~y~~~~~~~~~~r~~~~ 391 (528)
.+.+|++++|||||.+||+|+|+|||+|+|++|++++.+++.++....+++.+.+..+....+.|.+...+.+++|++++
T Consensus 301 ~~~sR~~~a~ardg~lp~~~~~v~~~~~tP~~a~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~i~lr~~~~ 380 (445)
T PRK11357 301 MYQPRLEYAMAKDNLFFKCFGHVHPKYNTPDVSIILQGALGIFFIFVSDLTSLLGYFTLVMCFKNTLTFGSIIWCRKRDD 380 (445)
T ss_pred HhhhhHHHHHHhcCCchHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHheeecCCC
Confidence 99999999999999999999999999999999999999999888877888889888888888999998888887775432
Q ss_pred CCCCCcccccccchhhHHHHHHHHHhhhhcchhhccchhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCccchhHHH
Q 009714 392 TSRNDSSRLTSAWRQGVICLIIIACCGFGAGLFYRINASYILLIVAVVIAVLASAMLCLRHGYSDPPGFSCPGVPLLPAV 471 (528)
Q Consensus 392 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~p~~~~~ 471 (528)
+ +|+||+|+.|+.|++
T Consensus 381 ~----------------------------------------------------------------~~~~k~p~~~~~~~~ 396 (445)
T PRK11357 381 Y----------------------------------------------------------------KPLWRTPAFGLMTTL 396 (445)
T ss_pred C----------------------------------------------------------------CCCcccCCchHHHHH
Confidence 2 567999999999999
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHHHHHHHHHHHHhhcccccC
Q 009714 472 SIFFNLFLFA----QLHYEAWWRFVILSFISIGLYAFYGQYHAD 511 (528)
Q Consensus 472 ~~~~~~~~~~----~~~~~~~~~~~~~~~~g~~~y~~~~~~~~~ 511 (528)
+++.++++.. ..+..++....++.++|+.+|+.+++|+++
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~~~ 440 (445)
T PRK11357 397 AIASSLILVASTFVWAPIPGLICAVIVIATGLPAYAFWAKRSRQ 440 (445)
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhhhHHhheechhhh
Confidence 9999888754 234455667788899999999977666544
No 5
>PRK11387 S-methylmethionine transporter; Provisional
Probab=100.00 E-value=1.7e-50 Score=424.55 Aligned_cols=406 Identities=19% Similarity=0.301 Sum_probs=323.0
Q ss_pred cccccccccccCcccccCCCCh-HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCchhhhhHHHhchhHHHHHHHHHHHH
Q 009714 21 ARLLAPEYSLSPVPWLATPVQV-RVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLD 99 (528)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~G~-~~~l~~~l~~l~~~~~a~~~ael~~~~P~~~Gg~y~~~~~~~g~~~gf~~gw~~~l~ 99 (528)
.|.+-+...+...+...+.+|| +++++|+++++++++.+++|+||++++|+ +||.|.|+++.+||.+||.+||.+|++
T Consensus 26 ig~~IG~Gif~~~g~~~~~~G~~~~~l~~~i~~~~~~~~~~~~aELas~~P~-aGG~y~y~~~~~g~~~gf~~gw~~~~~ 104 (471)
T PRK11387 26 LGGVIGTGLFFNTGYIISTTGAAGTLLAYLIGALVVYLVMQCLGELSVAMPE-TGAFHVYAARYLGPATGYTVAWLYWLT 104 (471)
T ss_pred HHhhhhhHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCCHHHHHHHhcChHHHHHHHHHHHHH
Confidence 3444334444444556677887 79999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 009714 100 YHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTVV 179 (528)
Q Consensus 100 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ln~~g~~~~~~~~~i~~~~ 179 (528)
|....+..+...+.++..+. | ..+.| ...+++.++.+.+|++|+|..+++|+..+.+
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~---p----~~~~~----------------~~~~~~~~~~~~in~~gvk~~~~~~~~~~~~ 161 (471)
T PRK11387 105 WTVALGSSLTAAGFCMQYWF---P----QVPVW----------------PWCLLFCALIFGLNVVSTRFFAEGEFWFSLI 161 (471)
T ss_pred HHHHHHHHHHHHHHHHHhcc---C----cCcHH----------------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 98888777666655544321 1 11222 2455556778899999999999999999999
Q ss_pred HHHHHHHHHhhhccc------cc-------ccCC--CCCCCCChHHHHHHHHHHHHhhhhhHHHhhhhhhhcCCCCchhH
Q 009714 180 KVIIVIVVIFAGAFE------VD-------VSNW--SPFAPNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPI 244 (528)
Q Consensus 180 ~i~~l~~~~i~~~~~------~~-------~~~~--~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~k~p~k~ip~ 244 (528)
|++.++.+++.++.. .+ .+++ +++.|++..+++.++..++|+|.|+|.+++++||+|||+||+||
T Consensus 162 ki~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~knP~r~iPr 241 (471)
T PRK11387 162 KVVTILAFIVLGGAAIFGFIPMQDGSPAPGLRNLTAEGWFPHGGLPILMTMVAVNFAFSGTELIGIAAGETENPAKVIPV 241 (471)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCCCCcccccCCCCCCcccHHHHHHHHHHHHHHHcCHHHHHHHHHHhcChhhHHHH
Confidence 998887776655321 00 1111 23445666678889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccCC-CCcHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhc
Q 009714 245 GILGSLLICAALYVGVSLVLTGMVPYKFLD-EDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGR 323 (528)
Q Consensus 245 ai~~s~~~~~i~y~l~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~a~a~ 323 (528)
|+..++.++.++|++..++.....|.++.+ +++|+.+++++.++++...++.+..+++.+++.|+.+++.||++++|||
T Consensus 242 Ai~~~~~~~~~~y~~~~~~~~~~~p~~~~~~~~~p~~~~~~~~g~~~~~~ii~~~~~~s~~~~~~~~~~~~sR~l~a~ar 321 (471)
T PRK11387 242 AIRTTIARLVIFFVGTVLVLAALIPMQQAGVEKSPFVLVFEKVGIPYAADIFNFVILTAILSAANSGLYASGRMLWSLSN 321 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHheecCccccCccCChHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHh
Confidence 999999999999999999999999987764 5689999999999999999999999999999999999999999999999
Q ss_pred CCCCchhhhhhcCCcccchHHHHHHHHHHHHHHHhh--C----HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCc
Q 009714 324 DGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLF--N----VRVLSHILSVGTLTGYSVVSACVIALRWKDRTSRNDS 397 (528)
Q Consensus 324 dg~lP~~~~~~n~r~~~P~~a~l~~~~i~~~~~~~~--~----~~~l~~~~~~~~l~~y~~~~~~~~~~r~~~~~~~~~~ 397 (528)
||.+|++|+|+| |+++|++|+++..++..+..+.. . ++.+.++.+...++.|.+.+++.+++|+++++..++
T Consensus 322 dg~lP~~f~~~~-~~~~P~~Ail~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~li~y~~~~~~~i~lr~~~~~~~~~- 399 (471)
T PRK11387 322 EGTLPACFARLT-KRGIPLTALSVSMLGGLLALFSSVVAPDTVFVALSAISGFAVVAVWLSICASHFMFRRRHLRDGKA- 399 (471)
T ss_pred cCCcCHHHHHhC-CCCCcHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-
Confidence 999999999999 77999999988766544332221 1 245677778888899999999999999887653211
Q ss_pred ccccccchhhHHHHHHHHHhhhhcchhhccchhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCccchhHHHHHHHHH
Q 009714 398 SRLTSAWRQGVICLIIIACCGFGAGLFYRINASYILLIVAVVIAVLASAMLCLRHGYSDPPGFSCPGVPLLPAVSIFFNL 477 (528)
Q Consensus 398 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~ 477 (528)
..+++||+|+.|+.|.++++.++
T Consensus 400 ---------------------------------------------------------~~~~~~~~~~~~~~~~l~~~~~~ 422 (471)
T PRK11387 400 ---------------------------------------------------------LSELAYRAPWYPLTPILGFVLCL 422 (471)
T ss_pred ---------------------------------------------------------CCCCCccCCCccHHHHHHHHHHH
Confidence 12678999999999999999888
Q ss_pred HHHhcC--CHH---HHHHHHHHHHHHHHHHHhhcccc
Q 009714 478 FLFAQL--HYE---AWWRFVILSFISIGLYAFYGQYH 509 (528)
Q Consensus 478 ~~~~~~--~~~---~~~~~~~~~~~g~~~y~~~~~~~ 509 (528)
+.+... ++. .......+.+++++.|..+++++
T Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (471)
T PRK11387 423 LACVGLAFDPSQRIALWCGIPFVALCYGAYYLTQRLK 459 (471)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 776533 222 24456666777888887665443
No 6
>TIGR00909 2A0306 amino acid transporter.
Probab=100.00 E-value=4.1e-50 Score=418.25 Aligned_cols=399 Identities=34% Similarity=0.577 Sum_probs=349.0
Q ss_pred ccCCCChHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCchhhhhHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009714 36 LATPVQVRVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYV 115 (528)
Q Consensus 36 ~~~~~G~~~~l~~~l~~l~~~~~a~~~ael~~~~P~~~Gg~y~~~~~~~g~~~gf~~gw~~~l~~~~~~a~~~~~~~~~~ 115 (528)
..+.+|++.+++|+++++..++.+++++|+++++|+ +||.|.|++|.+||..|++++|.+++++....+..+..+++++
T Consensus 30 ~~~~~G~~~~l~~li~~~~~~~~a~~~~el~~~~p~-~Gg~y~~~~~~~G~~~g~~~gw~~~~~~~~~~a~~~~~~~~~~ 108 (429)
T TIGR00909 30 AAGKAGPAVILSFVLAGLTALFIALVYAELAAMLPV-AGSPYTYAYEAMGELTAFIIGWSLWLEYGVAVAAVAVGWGGYL 108 (429)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CCcceeeHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455678999999999999999999999999999998 9999999999999999999999999999999999999999998
Q ss_pred HHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 009714 116 VSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEV 195 (528)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ln~~g~~~~~~~~~i~~~~~i~~l~~~~i~~~~~~ 195 (528)
..++... +.+.+++.... ........+.+++++++.+.+|++|+|..+++|.+...++++.++++++.+..+.
T Consensus 109 ~~~~~~~---~~~~~~~~~~~----~~~~~~~~~~~i~~~~~~~~l~~~g~~~~~~~~~v~~~~~i~~l~~~~~~~~~~~ 181 (429)
T TIGR00909 109 QEFLPGV---GLDLPAVLTAK----PGNGGVFNLPALLIVLFLTYILYLGAKESGKVNDILVVLKVAALLLFAALGAIHF 181 (429)
T ss_pred HHHHHHc---cccCchhhhcC----CcccccccHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhhHHHhhC
Confidence 8776421 11112211000 0000011235677888999999999999999999999999999888777777776
Q ss_pred cccCCCCCCCCChHHHHHHHHHHHHhhhhhHHHhhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhccccccCC-
Q 009714 196 DVSNWSPFAPNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLD- 274 (528)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~k~p~k~ip~ai~~s~~~~~i~y~l~~~~~~~~~~~~~~~- 274 (528)
+.++++++.|.++.++..++...+|+|.|+|.+++++||+|||+|++||++..+..++.++|++.........|.+++.
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~~~p~r~ip~ai~~~~~~~~v~Yil~~~~~~~~~~~~~~~~ 261 (429)
T TIGR00909 182 ASNNYTPFMPMGFGGVGAATALVFFAFIGFEAISTAAEEVKNPERDIPKAIILSLIVVTLLYVLVAAVILGAVPWRQLAG 261 (429)
T ss_pred cHHhcCCCCCCcHHHHHHHHHHHHHHHhhHHHHHhhHHhccCccccccHHHHHHHHHHHHHHHHHHHHHhcCcCHHHhCC
Confidence 7778887777788889999999999999999999999999999999999999999999999999999998888887664
Q ss_pred CCcHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCCCCchhhhhhcCCcccchHHHHHHHHHHHH
Q 009714 275 EDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGI 354 (528)
Q Consensus 275 ~~~p~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~~~~~n~r~~~P~~a~l~~~~i~~~ 354 (528)
+++|+.++.++.++++...++.+..+++.+++.++.+.+.||+++++||||.+|++++|+|||+++|++|+++..+++.+
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~~~~~a~dg~lP~~~~~~~~~~~~P~~a~~~~~~i~~~ 341 (429)
T TIGR00909 262 STAPLSLVGYDLGQGIGGLILTAGAVFSIASVMLAGIYGTSRVLFAMSRDGLLPGSLSKVHPKTGTPHMSIIIFSLTAAL 341 (429)
T ss_pred CCcHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCCCCCcHHHHHHHHHHHHH
Confidence 56788888888888999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCcccccccchhhHHHHHHHHHhhhhcchhhccchhHHHH
Q 009714 355 LAGLFNVRVLSHILSVGTLTGYSVVSACVIALRWKDRTSRNDSSRLTSAWRQGVICLIIIACCGFGAGLFYRINASYILL 434 (528)
Q Consensus 355 ~~~~~~~~~l~~~~~~~~l~~y~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (528)
+....+++.+.++.+...++.|.+.+++.+++|+|+||.
T Consensus 342 ~~~~~~~~~l~~~~~~~~~~~y~~~~~a~~~lr~~~~~~----------------------------------------- 380 (429)
T TIGR00909 342 LASLVPLEGLAELTSIGTLIAFAAVNVAVIILRRRRPDI----------------------------------------- 380 (429)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-----------------------------------------
Confidence 777778899999999999999999999999999887764
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCCCCCccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhh
Q 009714 435 IVAVVIAVLASAMLCLRHGYSDPPGFSCPGVPLLPAVSIFFNLFLFAQLHYEAWWRFVILSFISIGLYAFY 505 (528)
Q Consensus 435 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~ 505 (528)
++++|.|..|+.+.+.+..+.++....++.++....+|.++|+++|..|
T Consensus 381 ----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~ 429 (429)
T TIGR00909 381 ----------------------QRAFRCPLVPVLPVLVVSYCIYLLLNLGPGTTVWFLVWMLLGSVFYFIY 429 (429)
T ss_pred ----------------------CCCCCCCcchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcC
Confidence 5679999999999888888888888889999999999999999999754
No 7
>PRK10655 potE putrescine transporter; Provisional
Probab=100.00 E-value=4.3e-50 Score=418.67 Aligned_cols=389 Identities=20% Similarity=0.296 Sum_probs=323.6
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCchhhhhHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009714 39 PVQVRVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSI 118 (528)
Q Consensus 39 ~~G~~~~l~~~l~~l~~~~~a~~~ael~~~~P~~~Gg~y~~~~~~~g~~~gf~~gw~~~l~~~~~~a~~~~~~~~~~~~~ 118 (528)
.+|+..+++|+++++++++.+++|+|+++++|+ +||.|.|++|.+||..||++||.+|+++.......+.....|+..+
T Consensus 35 ~~G~~~~~~w~i~~~~~~~~a~~~aeL~~~~P~-~GG~y~y~~~~~G~~~gf~~gw~~~~~~~~~~~~~a~~~~~y~~~~ 113 (438)
T PRK10655 35 QVGTISILSWLVTAVGSMALAYAFAKCGMFSRK-SGGMGGYAEYAFGKSGNFMANYTYGVSLLIANVAIAISAVGYGTEL 113 (438)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCC-CCchHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 478888999999999999999999999999999 9999999999999999999999999999887666666677777654
Q ss_pred HhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Q 009714 119 LELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVS 198 (528)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ln~~g~~~~~~~~~i~~~~~i~~l~~~~i~~~~~~~~~ 198 (528)
++. .. ++....++.++++++.+.+|++|+|..+++|++.+..+++.++++++.+....+++
T Consensus 114 ~~~------~~-------------~~~~~~~~~~~~l~~~~~ln~~g~~~~~~i~~i~~~~~l~~l~~~~i~~~~~~~~~ 174 (438)
T PRK10655 114 FGA------TL-------------SPVQICLATIGVLWLCTVANFGGARITGQISSVTVWGVIIPVVGLSIIGWFWFSPS 174 (438)
T ss_pred ccc------cc-------------chHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 321 00 12233456677788899999999999999999999999888888877766555555
Q ss_pred CCC-CCCCCC---hHHHHHHHHHHHHhhhhhHHHhhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhccccccCC
Q 009714 199 NWS-PFAPNG---FKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLD 274 (528)
Q Consensus 199 ~~~-~~~~~~---~~~~~~~~~~~~~~f~G~e~~~~~a~E~k~p~k~ip~ai~~s~~~~~i~y~l~~~~~~~~~~~~~~~ 274 (528)
++. ++.|++ +.++..++...+|+|.|+|.+++++||+|||+||+||++..+..++.++|++.........|++++.
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~iPrAi~~~~~~~~~~Y~l~~~~~~~~~~~~~l~ 254 (438)
T PRK10655 175 LYVAAWNPHHLPFFSAVGSSIAMTLWAFLGLESACANSDAVENPERNVPIAVLGGTLGAAVIYIVSTNVIAGIVPNMELA 254 (438)
T ss_pred cccCCcCccCCchHHHHHHHHHHHHHHHhhhhhhhhhHHHhhCccccccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHh
Confidence 543 233333 3567778888999999999999999999999999999999999999999999999888888877764
Q ss_pred -CCcHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCCCCchhhhhhcCCcccchHHHHHHHHHHH
Q 009714 275 -EDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAG 353 (528)
Q Consensus 275 -~~~p~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~~~~~n~r~~~P~~a~l~~~~i~~ 353 (528)
+++|..+++++..+++...++.+..+++.+++.++.+.+.+|++++++|||.+||+|+|+| |+++|++|+++..+++.
T Consensus 255 ~~~~p~~~~~~~~~g~~~~~~~~~~~~is~~~~~~~~~~~~sR~~~~~a~dg~lP~~~~~v~-~~~tP~~all~~~~i~~ 333 (438)
T PRK10655 255 NSTAPFGLAFAQMFNPTVGKIVMALMVMSCCGSLLGWQFTIAQVFKSSADEGYFPKIFSRVT-KVDAPVQGMLIIVVIQS 333 (438)
T ss_pred hccchHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHhhC-cCCCCHHHHHHHHHHHH
Confidence 5689999998888888788888888999999999999999999999999999999999999 77999999999988876
Q ss_pred HHHHhh-------CHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCcccccccchhhHHHHHHHHHhhhhcchhhc
Q 009714 354 ILAGLF-------NVRVLSHILSVGTLTGYSVVSACVIALRWKDRTSRNDSSRLTSAWRQGVICLIIIACCGFGAGLFYR 426 (528)
Q Consensus 354 ~~~~~~-------~~~~l~~~~~~~~l~~y~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 426 (528)
++.+.. .++.+.++.++..++.|.+++++.+++|+|+++.
T Consensus 334 ~l~l~~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~~~~~lr~~~~~~--------------------------------- 380 (438)
T PRK10655 334 LLSLMTISPSLNSQFNVLVNLAVVTNIIPYILSMAALVIIQKVANVP--------------------------------- 380 (438)
T ss_pred HHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC---------------------------------
Confidence 655432 3567888888888999999999999999887654
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhc
Q 009714 427 INASYILLIVAVVIAVLASAMLCLRHGYSDPPGFSCPGVPLLPAVSIFFNLFLFAQLHYEAWWRFVILSFISIGLYAFYG 506 (528)
Q Consensus 427 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~ 506 (528)
+|+||.| +.+|.++.+.+++.+...+.+......+++++|+++|..+.
T Consensus 381 ------------------------------~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~ 428 (438)
T PRK10655 381 ------------------------------PSKAKVA--NFIAFVGALYSFYALYSSGEEAMLYGSIVTFLGWTLYGLIS 428 (438)
T ss_pred ------------------------------cchhHHH--HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455554 37788888888877666666667778889999999998766
Q ss_pred ccccCCC
Q 009714 507 QYHADPS 513 (528)
Q Consensus 507 ~~~~~~~ 513 (528)
+|+.+++
T Consensus 429 ~~~~~~~ 435 (438)
T PRK10655 429 PRFELKN 435 (438)
T ss_pred Hhhhhcc
Confidence 6655444
No 8
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=100.00 E-value=3.3e-49 Score=411.44 Aligned_cols=403 Identities=19% Similarity=0.251 Sum_probs=328.1
Q ss_pred ccccCCCChHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCchhhhhHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009714 34 PWLATPVQVRVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLAS 113 (528)
Q Consensus 34 ~~~~~~~G~~~~l~~~l~~l~~~~~a~~~ael~~~~P~~~Gg~y~~~~~~~g~~~gf~~gw~~~l~~~~~~a~~~~~~~~ 113 (528)
+...+.+||+++++|+++++++++.+++++||++++|+ +||.|.|++|.+||.+||.+||.+|+++....+.++...+.
T Consensus 17 g~~~~~aG~~~ll~~~i~gi~~~~~al~~aEL~s~~P~-~Gg~y~y~~~~~G~~~gf~~gw~~~~~~~~~~~~~~~~~~~ 95 (446)
T PRK10197 17 SVAIAEAGPAVLLAYLFAGLLVVMIMRMLAEMAVATPD-TGSFSTYADKAIGRWAGYTIGWLYWWFWVLVIPLEANIAAM 95 (446)
T ss_pred HHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCCHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566789999999999999999999999999999999 99999999999999999999999999999988888776666
Q ss_pred HHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 009714 114 YVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAF 193 (528)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ln~~g~~~~~~~~~i~~~~~i~~l~~~~i~~~~ 193 (528)
++..+. + ..+ ...++.+++++.+.+|++|+|..+++|.+.+.+|++.++.+++.++.
T Consensus 96 ~~~~~~---~----~~~----------------~~~~~~~~l~~~~~lN~~gv~~~~~i~~~~~~~ki~~li~~ii~~~~ 152 (446)
T PRK10197 96 ILHSWV---P----GIP----------------IWLFSLVITLALTGSNLLSVKNYGEFEFWLALCKVIAILAFIFLGAV 152 (446)
T ss_pred HHHhcc---c----cCc----------------HHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 654321 1 111 23478888899999999999999999999999999988887776553
Q ss_pred cc-------cccC----C--CCCCCCChHHHHHHHHHHHHhhhhhHHHhhhhhhhcCCCCchhHHHHHHHHHHHHHHHHH
Q 009714 194 EV-------DVSN----W--SPFAPNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGV 260 (528)
Q Consensus 194 ~~-------~~~~----~--~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~k~p~k~ip~ai~~s~~~~~i~y~l~ 260 (528)
.. +..+ + .++.|+++.++..++...+|+|.|+|.+++.+||+|||+||+||++..+...+.++|++.
T Consensus 153 ~~~g~~~~~~~~~~~~~~~~~~~~p~g~~~~~~a~~~~~faf~G~e~~~~~a~E~knP~r~iPrai~~~~~~i~i~Yil~ 232 (446)
T PRK10197 153 AISGFYPYAEVSGISRLWDSGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAESDTPEKHIVRATNSVIWRISIFYLCS 232 (446)
T ss_pred HhcCCCCCCCCCcchhcCCCCCCCcccHHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHH
Confidence 21 1111 1 134567888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccccccCCC--CcHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCCCCchhhhhhcCCc
Q 009714 261 SLVLTGMVPYKFLDE--DAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKR 338 (528)
Q Consensus 261 ~~~~~~~~~~~~~~~--~~p~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~~~~~n~r~ 338 (528)
.+......|+++.+. .+++..+++..++++...++.+..+++.+++.|+.+++.||+++++||||.+||+++|+| |+
T Consensus 233 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~~~~~~ii~~~i~~~~~~~~n~~~~~~sR~l~a~ardg~lP~~~~~~~-~~ 311 (446)
T PRK10197 233 IFVVVALIPWNMPGLKAVGSYRSVLELLNIPHAKLIMDCVILLSVTSCLNSALYTASRMLYSLSRRGDAPAVMGKIN-RS 311 (446)
T ss_pred HHHHheecCcCcccccccCcHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHhhC-cC
Confidence 999999988876543 356777888888888889999999999999999999999999999999999999999999 88
Q ss_pred ccchHHHHHHHHHHHHHHHhh------CHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCcccccccchhhHHHHH
Q 009714 339 HTPVHSQVWVGIVAGILAGLF------NVRVLSHILSVGTLTGYSVVSACVIALRWKDRTSRNDSSRLTSAWRQGVICLI 412 (528)
Q Consensus 339 ~~P~~a~l~~~~i~~~~~~~~------~~~~l~~~~~~~~l~~y~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~~~~ 412 (528)
|+|++|++++.+++.+..+.. .++.+.++.+...++.|.+.+++.+++||+.++.
T Consensus 312 ~~P~~Ail~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~li~y~~~~~a~i~lr~~~~~~------------------- 372 (446)
T PRK10197 312 KTPYVAVLLSTGAAFLTVVVNYYAPAKVFKFLIDSSGAIALLVYLVIAVSQLRMRKILRAE------------------- 372 (446)
T ss_pred CCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------------------
Confidence 999999999887766544332 3577888888899999999999999999763321
Q ss_pred HHHHhhhhcchhhccchhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCccchhHHHHHHHHHHHHhc--CC--HHHH
Q 009714 413 IIACCGFGAGLFYRINASYILLIVAVVIAVLASAMLCLRHGYSDPPGFSCPGVPLLPAVSIFFNLFLFAQ--LH--YEAW 488 (528)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~--~~--~~~~ 488 (528)
++++++|.|+.|+.+.++++.+.+.+.. .+ ....
T Consensus 373 ------------------------------------------~~~~~~~~~~~p~~~~~~i~~~~~~~~~~~~~~~~~~~ 410 (446)
T PRK10197 373 ------------------------------------------GSEIRLRMWLYPWLTWLVIGFITFVLVVMLFRPAQQLE 410 (446)
T ss_pred ------------------------------------------CCCCCCcCCCcchHHHHHHHHHHHHHHHHHHCcchHHH
Confidence 1256799999999999998888665443 23 2233
Q ss_pred HHHHHHHHHHHHHHH-hhcccccCCCCCccchhhhchhhc
Q 009714 489 WRFVILSFISIGLYA-FYGQYHADPSSDTIVYHRVAVAEA 527 (528)
Q Consensus 489 ~~~~~~~~~g~~~y~-~~~~~~~~~~~~~~~~~~~~~~~~ 527 (528)
....+++++++..|+ ..+|.++++. ++..|.++.
T Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 445 (446)
T PRK10197 411 VISTGLLAIGIICTVPIMARWKKLVL-----WQKTPVHNT 445 (446)
T ss_pred HHHHHHHHHHHHhhhHHHhhhccccc-----CcccccccC
Confidence 346677888888888 4444433332 455555543
No 9
>PRK10249 phenylalanine transporter; Provisional
Probab=100.00 E-value=3.6e-49 Score=412.46 Aligned_cols=362 Identities=18% Similarity=0.318 Sum_probs=305.4
Q ss_pred ccccCCCChHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCchhhhhHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009714 34 PWLATPVQVRVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLAS 113 (528)
Q Consensus 34 ~~~~~~~G~~~~l~~~l~~l~~~~~a~~~ael~~~~P~~~Gg~y~~~~~~~g~~~gf~~gw~~~l~~~~~~a~~~~~~~~ 113 (528)
+...+.+||+++++|+++++++++.+++++|+++++|+ +||.|.|++|.+||.+||.+||.+|+++....+......+.
T Consensus 46 g~~~~~aGp~~~l~~li~~~~~~~~~~~~aEl~~~~P~-~Gg~~~y~~~~~g~~~gf~~gw~~~~~~~~~~~~~~~a~~~ 124 (458)
T PRK10249 46 GPAIQMAGPAVLLGYGVAGIIAFLIMRQLGEMVVEEPV-SGSFAHFAYKYWGPFAGFLSGWNYWVMFVLVGMAELTAAGI 124 (458)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCCHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577889999999999999999999999999999999 99999999999999999999999999998888877777777
Q ss_pred HHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 009714 114 YVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAF 193 (528)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ln~~g~~~~~~~~~i~~~~~i~~l~~~~i~~~~ 193 (528)
|+..+.+ ..+.| ....+++++.+.+|++|+|..+++|.+++.+|++.++.+++.++.
T Consensus 125 ~~~~~~~-------~~~~~----------------~~~~~~~~l~~~lN~~gv~~~~~i~~~~~~ikv~~i~~~i~~~i~ 181 (458)
T PRK10249 125 YMQYWFP-------DVPTW----------------IWAAAFFIIINAVNLVNVRLYGETEFWFALIKVLAIIGMIGFGLW 181 (458)
T ss_pred HHHHcCC-------cCcHH----------------HHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 7765421 11222 357777888999999999999999999999998777776655432
Q ss_pred c---------ccccC-C--CCCCCCChHHHHHHHHHHHHhhhhhHHHhhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHH
Q 009714 194 E---------VDVSN-W--SPFAPNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVS 261 (528)
Q Consensus 194 ~---------~~~~~-~--~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~k~p~k~ip~ai~~s~~~~~i~y~l~~ 261 (528)
. .+.++ + .++.|+++.+++.++...+|+|.|+|.+++++||+|||+||+||++..+...+.++|++..
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~a~E~~~P~k~iPrai~~~~~~~~~~y~~~~ 261 (458)
T PRK10249 182 LLFSGHGGEKASIDNLWRYGGFFATGWNGLILSLAVIMFSFGGLELIGITAAEARDPEKSIPKAVNQVVYRILLFYIGSL 261 (458)
T ss_pred HHHcCCCCCCCChhhccCCCCCCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 1 11112 1 1234678888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccccccCC-CCcHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCCCCchhhhhhcCCccc
Q 009714 262 LVLTGMVPYKFLD-EDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHT 340 (528)
Q Consensus 262 ~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~~~~~n~r~~~ 340 (528)
.......|+++.. +++|+.++++..++++...++.+..+++.+++.|+.+++.||+++++||||.+|++|+|+| |+|+
T Consensus 262 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~sR~l~a~ardg~lP~~~~kv~-~~~~ 340 (458)
T PRK10249 262 VVLLALYPWVEVKSNSSPFVMIFHNLDSNVVASALNFVILVASLSVYNSGVYSNSRMLFGLSVQGNAPKFLTRVS-RRGV 340 (458)
T ss_pred HHHheeccccccCccCCcHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCHHHHHhC-CCCC
Confidence 9988888887764 4579999999998888888899999999999999999999999999999999999999999 7899
Q ss_pred chHHHHHHHHHHHHHHHhh------CHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCcccccccchhhHHHHHHH
Q 009714 341 PVHSQVWVGIVAGILAGLF------NVRVLSHILSVGTLTGYSVVSACVIALRWKDRTSRNDSSRLTSAWRQGVICLIII 414 (528)
Q Consensus 341 P~~a~l~~~~i~~~~~~~~------~~~~l~~~~~~~~l~~y~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~~~~~~ 414 (528)
|++|++++.+++.+..+.. .++.+.++.+...++.|.+++.+.+++|+++++.+
T Consensus 341 P~~All~~~~i~~l~~l~~~~~~~~~f~~l~~~~~~~~~i~y~~~~~~~l~~r~~~~~~~-------------------- 400 (458)
T PRK10249 341 PINSLMLSGAITSLVVLINYLLPQKAFGLLMALVVATLLLNWIMICLAHLRFRAAMRRQG-------------------- 400 (458)
T ss_pred CHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------------------
Confidence 9999999999887665442 24667777888889999999999999987543321
Q ss_pred HHhhhhcchhhccchhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCccchhHHHHHHHHHHHHh
Q 009714 415 ACCGFGAGLFYRINASYILLIVAVVIAVLASAMLCLRHGYSDPPGFSCPGVPLLPAVSIFFNLFLFA 481 (528)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~ 481 (528)
.+++||.|..|+.++++++.+...+.
T Consensus 401 -----------------------------------------~~~p~~~~~~p~~~~~~l~~~~~~~v 426 (458)
T PRK10249 401 -----------------------------------------RETQFKALLYPFGNYLCIAFLGMILL 426 (458)
T ss_pred -----------------------------------------CCCCccCCCccHHHHHHHHHHHHHHH
Confidence 15679999999999888888777654
No 10
>PRK10746 putative transport protein YifK; Provisional
Probab=100.00 E-value=4.6e-49 Score=411.35 Aligned_cols=392 Identities=18% Similarity=0.259 Sum_probs=324.7
Q ss_pred ccccCCCChHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCchhhhhHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009714 34 PWLATPVQVRVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLAS 113 (528)
Q Consensus 34 ~~~~~~~G~~~~l~~~l~~l~~~~~a~~~ael~~~~P~~~Gg~y~~~~~~~g~~~gf~~gw~~~l~~~~~~a~~~~~~~~ 113 (528)
+...+.+||+++++|+++++++++++++++||++++|+ +||.|+|++|.+||.+||.+||.+|++|....+....+.+.
T Consensus 35 g~~l~~aGp~~~l~~~i~g~~~~~v~~~~aEl~~~~P~-sGg~~~y~~~~~g~~~Gf~~gw~~~~~~~~~~~~~~~a~~~ 113 (461)
T PRK10746 35 ASTLKWAGPSVLLAYIIAGLFVFFIMRSMGEMLFLEPV-TGSFAVYAHRYMSPFFGYLTAWSYWFMWMAVGISEITAIGV 113 (461)
T ss_pred HHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566789999999999999999999999999999999 99999999999999999999999999999888888888888
Q ss_pred HHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 009714 114 YVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAF 193 (528)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ln~~g~~~~~~~~~i~~~~~i~~l~~~~i~~~~ 193 (528)
|++.++. ..+.| ....+++++.+.+|++|+|..+++|...+.+|++.++++++.++.
T Consensus 114 ~l~~~~p-------~~~~~----------------~~~~~~~~~~~~lN~~gv~~~~~~e~~~~~~ki~~i~~~ii~~~~ 170 (461)
T PRK10746 114 YVQFWFP-------EMAQW----------------IPALIAVALVALANLAAVRLYGEIEFWFAMIKVTTIIVMIVIGLG 170 (461)
T ss_pred HHHHccC-------CCchH----------------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8765421 12222 356667788889999999999999999999998887776654431
Q ss_pred c-----------ccccCCC---CCCCCChHHHHHHHHHHHHhhhhhHHHhhhhhhhcCCCCchhHHHHHHHHHHHHHHHH
Q 009714 194 E-----------VDVSNWS---PFAPNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVG 259 (528)
Q Consensus 194 ~-----------~~~~~~~---~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~k~p~k~ip~ai~~s~~~~~i~y~l 259 (528)
. .+.+|+. ++.|+|+.++..++..+.|+|.|+|.+++.+||+|||+||+|||+..+...+.++|++
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~~faf~G~e~v~~~a~E~knP~k~iP~Ai~~~~~~i~~~yv~ 250 (461)
T PRK10746 171 VIFFGFGNGGQSIGFSNLTEHGGFFAGGWKGFLTALCIVVASYQGVELIGITAGEAKNPQVTLRSAVGKVLWRILIFYVG 250 (461)
T ss_pred HHHhCCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHH
Confidence 1 1123332 2456788899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccccccCC-CCcHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCCCCchhhhhhcCCc
Q 009714 260 VSLVLTGMVPYKFLD-EDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKR 338 (528)
Q Consensus 260 ~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~~~~~n~r~ 338 (528)
..++.....|+++.+ +++|+.+++++.+.+....++.+..+.+.+++.|+.+++.||++++|||||.+|++|+|+| |+
T Consensus 251 ~~~~~~~~~p~~~~~~~~sp~v~~~~~~g~~~~~~i~~~~il~a~~s~~n~~~~~~sR~l~~~a~~g~lP~~~~~~~-~~ 329 (461)
T PRK10746 251 AIFVIVTIFPWNEIGSNGSPFVLTFAKIGITAAAGIINFVVLTAALSGCNSGMYSCGRMLYALAKNRQLPAAMAKVS-RH 329 (461)
T ss_pred HHHHHeeeeCCCCCCCCCCcHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCHHHHHhC-CC
Confidence 999999999998876 4579999999998888888899999999999999999999999999999999999999999 88
Q ss_pred ccchHHHHHHHHHHHHHH---Hhh-----CHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCcccccccchhhHHH
Q 009714 339 HTPVHSQVWVGIVAGILA---GLF-----NVRVLSHILSVGTLTGYSVVSACVIALRWKDRTSRNDSSRLTSAWRQGVIC 410 (528)
Q Consensus 339 ~~P~~a~l~~~~i~~~~~---~~~-----~~~~l~~~~~~~~l~~y~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~~ 410 (528)
|+|++|+++..+...+.. ... .++.+.++.+++.++.|...+++.+++|+++|+..
T Consensus 330 g~P~~al~~~~~~~~l~~~~~~~~~~~~~~f~~l~~~~~~~~~i~w~~i~~~~i~~r~~~~~~~---------------- 393 (461)
T PRK10746 330 GVPVAGVAVSILILLVGSCLNYIIPNPQRVFVYVYSASVLPGMVPWFVILISQLRFRRAHKAAI---------------- 393 (461)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc----------------
Confidence 999999987754432211 111 14677888888889999999999999998876521
Q ss_pred HHHHHHhhhhcchhhccchhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCccchhHHHHHHHHHHHHhcC--C---H
Q 009714 411 LIIIACCGFGAGLFYRINASYILLIVAVVIAVLASAMLCLRHGYSDPPGFSCPGVPLLPAVSIFFNLFLFAQL--H---Y 485 (528)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~--~---~ 485 (528)
++++||.|+.|+.+.++++.++..+..+ + .
T Consensus 394 ---------------------------------------------~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 428 (461)
T PRK10746 394 ---------------------------------------------ASHPFRSILFPWANYLTMAFLICVLIGMYFNEDTR 428 (461)
T ss_pred ---------------------------------------------cCCCCcCCCccHHHHHHHHHHHHHHHHHHHCccHH
Confidence 2678999999999999888887764432 2 2
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccccC
Q 009714 486 EAWWRFVILSFISIGLYAFYGQYHAD 511 (528)
Q Consensus 486 ~~~~~~~~~~~~g~~~y~~~~~~~~~ 511 (528)
.+......++++..+.|..|++.++.
T Consensus 429 ~~~~~~~~~~~~~~~~y~~~~~~~~~ 454 (461)
T PRK10746 429 MSLFVGIIFLLAVTLIYKVFGLNRHG 454 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 45666777777888888877666543
No 11
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=100.00 E-value=5.5e-49 Score=410.70 Aligned_cols=378 Identities=21% Similarity=0.311 Sum_probs=315.1
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCchhhhhHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009714 40 VQVRVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSIL 119 (528)
Q Consensus 40 ~G~~~~l~~~l~~l~~~~~a~~~ael~~~~P~~~Gg~y~~~~~~~g~~~gf~~gw~~~l~~~~~~a~~~~~~~~~~~~~~ 119 (528)
.|+..+++|+++++.+++.+++|+||++++|+ +||.|+|+++.+||.+||++||.+|+++.......+.....|...++
T Consensus 38 ~g~~~~~~~~i~~~~~l~~al~~aEL~s~~P~-aGG~y~~~~~~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (445)
T PRK10644 38 TGGIAIYGWLVTIIGALGLSMVYAKMSSLDPS-PGGSYAYARRCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFF 116 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC-CCChhHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46678899999999999999999999999999 99999999999999999999999999987777666666666765543
Q ss_pred hhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccccccC
Q 009714 120 ELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSN 199 (528)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ln~~g~~~~~~~~~i~~~~~i~~l~~~~i~~~~~~~~~~ 199 (528)
+. .. + +....++..+++++.+.+|++|+|..+++|++.+.++++.++.+++.++...+.++
T Consensus 117 ~~---~~---~-------------~~~~~~~~~~~~~~~~~ln~~gvk~~~~i~~i~~~~~~i~l~~~~~~~~~~~~~~~ 177 (445)
T PRK10644 117 PI---LK---D-------------PLVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIPIVGIAVFGWFWFRGET 177 (445)
T ss_pred cc---cC---C-------------cHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchh
Confidence 21 10 0 11223466777888999999999999999999999999888888777665444433
Q ss_pred CCC-CCC---CChHHHHHHHHHHHHhhhhhHHHhhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhccccccCC-
Q 009714 200 WSP-FAP---NGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLD- 274 (528)
Q Consensus 200 ~~~-~~~---~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~k~p~k~ip~ai~~s~~~~~i~y~l~~~~~~~~~~~~~~~- 274 (528)
+.+ +.+ +++.++..++...+|+|.|+|.+++++||+|||+||+||++..++.++.++|++...+.....|++++.
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r~iPrai~~s~~i~~v~Y~l~~~~~~~~~~~~~l~~ 257 (445)
T PRK10644 178 YMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVCYVLSSTAIMGMIPNAALRV 257 (445)
T ss_pred ccCCccccccchHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCcccchhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHhc
Confidence 322 111 245577778889999999999999999999999999999999999999999999999999999887764
Q ss_pred CCcHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCCCCchhhhhhcCCcccchHHHHHHHHHHHH
Q 009714 275 EDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGI 354 (528)
Q Consensus 275 ~~~p~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~~~~~n~r~~~P~~a~l~~~~i~~~ 354 (528)
+++|+.+++++..+++...++.+..+++.+++.++.+...+|.+++|||||.+||+|+|+| |+++|++|++++.+++.+
T Consensus 258 ~~~p~~~~~~~~~g~~~~~~v~~~~~~s~~~~~~~~~~~~sr~~~a~ardg~lP~~~~~v~-~~~tP~~Ai~~~~~i~~l 336 (445)
T PRK10644 258 SASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPPIFARVN-KAGTPVAGLLIVGVLMTI 336 (445)
T ss_pred CCChHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHhhC-cCCCCHHHHHHHHHHHHH
Confidence 5689999998888887778888888899999999999999999999999999999999999 679999999999998877
Q ss_pred HHHhh-------CHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCcccccccchhhHHHHHHHHHhhhhcchhhcc
Q 009714 355 LAGLF-------NVRVLSHILSVGTLTGYSVVSACVIALRWKDRTSRNDSSRLTSAWRQGVICLIIIACCGFGAGLFYRI 427 (528)
Q Consensus 355 ~~~~~-------~~~~l~~~~~~~~l~~y~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 427 (528)
+.+.. .++.+.++.++..++.|.+++.+.+++|+|+++.
T Consensus 337 ~~l~~~~~~~~~~~~~l~~~~~~~~li~y~~~~~~~~~l~~~~~~~---------------------------------- 382 (445)
T PRK10644 337 FQLSSISPNASKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHFGK---------------------------------- 382 (445)
T ss_pred HHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcc----------------------------------
Confidence 65442 2567888888888999999999999988765431
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhh
Q 009714 428 NASYILLIVAVVIAVLASAMLCLRHGYSDPPGFSCPGVPLLPAVSIFFNLFLFAQLHYEAWWRFVILSFISIGLYAFY 505 (528)
Q Consensus 428 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~ 505 (528)
+.|..|++|+++++.+++++...++++.....++.+++..+|+..
T Consensus 383 ---------------------------------~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~ 427 (445)
T PRK10644 383 ---------------------------------ARPAYLAVTLIAFVYCIWAVVGSGAKEVMWSFVTLMVITAFYALN 427 (445)
T ss_pred ---------------------------------cccchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 124567899999999999988888887777777888888888643
No 12
>PRK10238 aromatic amino acid transporter; Provisional
Probab=100.00 E-value=2.9e-48 Score=405.43 Aligned_cols=339 Identities=19% Similarity=0.358 Sum_probs=287.6
Q ss_pred ccCcccccCCCChHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCchhhhhHHHhchhHHHHHHHHHHHHHHHHHHHHHH
Q 009714 30 LSPVPWLATPVQVRVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIAR 109 (528)
Q Consensus 30 ~~~~~~~~~~~G~~~~l~~~l~~l~~~~~a~~~ael~~~~P~~~Gg~y~~~~~~~g~~~gf~~gw~~~l~~~~~~a~~~~ 109 (528)
+...+...+.+||+++++|+++++++++.+++++|+++++|+ +||.|+|++|.+||..||.+||.++++|....++...
T Consensus 33 f~~~g~~~~~~Gp~~i~~~~i~gi~~~~v~~s~aEl~s~~P~-aGg~y~~~~~~~g~~~gf~~Gw~~~~~~~~~~~~~~~ 111 (456)
T PRK10238 33 FLGSASVIQSAGPGIILGYAIAGFIAFLIMRQLGEMVVEEPV-AGSFSHFAYKYWGSFAGFASGWNYWVLYVLVAMAELT 111 (456)
T ss_pred HHhhHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445677789999999999999999999999999999999 9999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 009714 110 SLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIF 189 (528)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ln~~g~~~~~~~~~i~~~~~i~~l~~~~i 189 (528)
..++++..+. | +.+.| ....++.++.+.+|++|+|..+++|++.+.+|++.++++++
T Consensus 112 ~~~~~~~~~~---p----~~~~~----------------~~~~i~~~~~~~lN~~gv~~~~~~~~~~~~iki~~i~~~ii 168 (456)
T PRK10238 112 AVGKYIQFWY---P----EIPTW----------------VSAAVFFVVINAINLTNVKVFGEMEFWFAIIKVIAVVAMII 168 (456)
T ss_pred HHHHHHHHhc---C----cCcHH----------------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888876542 1 12223 25667778899999999999999999999999888776655
Q ss_pred hhcc---c---c---cccCC---CCCCCCChHHHHHHHHHHHHhhhhhHHHhhhhhhhcCCCCchhHHHHHHHHHHHHHH
Q 009714 190 AGAF---E---V---DVSNW---SPFAPNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALY 257 (528)
Q Consensus 190 ~~~~---~---~---~~~~~---~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~k~p~k~ip~ai~~s~~~~~i~y 257 (528)
.++. . . +..++ +++.|+++.++..++....|+|.|+|.+++++||+|||+||+|||+..+...+.++|
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~aeE~knP~r~iPrAi~~~~~~i~~~y 248 (456)
T PRK10238 169 FGGWLLFSGNGGPQATVSNLWDQGGFLPHGFTGLVMMMAIIMFSFGGLELVGITAAEADNPEQSIPKATNQVIYRILIFY 248 (456)
T ss_pred HHHHHHHcCCCCCCccccccCCCCCCccccHHHHHHHHHHHHHHhcCHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHH
Confidence 3321 1 0 11121 234567777888888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccccccCC-CCcHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCCCCchhhhhhcC
Q 009714 258 VGVSLVLTGMVPYKFLD-EDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHP 336 (528)
Q Consensus 258 ~l~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~~~~~n~ 336 (528)
+..........|.+++. +++|+.++++..+.+....++.+..+.+.+++.|+.+++.||++++|||||.+|++|+|+|
T Consensus 249 ~~~~~~~~~~~p~~~l~~~~sP~~~~~~~~g~~~~~~i~~~~i~~~~~s~~~~~~~~~sR~l~a~ardg~lP~~f~kv~- 327 (456)
T PRK10238 249 IGSLAVLLSLMPWTRVTADTSPFVLIFHELGDTFVANALNIVVLTAALSVYNSCVYCNSRMLFGLAQQGNAPKALASVD- 327 (456)
T ss_pred HHHHHHHheecChhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHhhC-
Confidence 99888887788888764 4689999999998888888999999999999999999999999999999999999999999
Q ss_pred CcccchHHHHHHHHHHHHHHHhh------CHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCC
Q 009714 337 KRHTPVHSQVWVGIVAGILAGLF------NVRVLSHILSVGTLTGYSVVSACVIALRWKDRTS 393 (528)
Q Consensus 337 r~~~P~~a~l~~~~i~~~~~~~~------~~~~l~~~~~~~~l~~y~~~~~~~~~~r~~~~~~ 393 (528)
|+++|++|++++.+++.+..+.. .++.+.++.+.+.++.|.++.++.+++||++++.
T Consensus 328 ~~~~P~~Ail~~~~i~~l~~l~~~~~~~~~f~~l~~~~~~~~~i~y~~~~~~~l~~r~~~~~~ 390 (456)
T PRK10238 328 KRGVPVNTILVSALVTALCVLINYLAPESAFGLLMALVVSALVINWAMISLAHMKFRRAKQEQ 390 (456)
T ss_pred cCCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 67999999999999877665542 2467777788888999999999999999876653
No 13
>PRK10580 proY putative proline-specific permease; Provisional
Probab=100.00 E-value=3.1e-48 Score=406.15 Aligned_cols=403 Identities=18% Similarity=0.277 Sum_probs=322.5
Q ss_pred cccccccccccccCcccccCCCChHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCchhhhhHHHhchhHHHHHHHHHHH
Q 009714 19 ASARLLAPEYSLSPVPWLATPVQVRVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLML 98 (528)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~G~~~~l~~~l~~l~~~~~a~~~ael~~~~P~~~Gg~y~~~~~~~g~~~gf~~gw~~~l 98 (528)
...|.+-....+...+...+.+||+++++|++++++.++.+++++|+++++|+ +||.|.|++|.+||.+||++||.+++
T Consensus 19 i~vg~~IG~Gif~~~g~~~~~aG~~~~l~~~i~~i~~~~~a~~~aEl~s~~P~-~Gg~y~y~~~~~G~~~gf~~gw~~~~ 97 (457)
T PRK10580 19 MALGSAIGTGLFYGSADAIKMAGPSVLLAYIIGGVAAYIIMRALGEMSVHNPA-ASSFSRYAQENLGPLAGYITGWTYCF 97 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCCHHHHHHHHcCcHHHHHHHHHHHH
Confidence 34444433333333345566799999999999999999999999999999999 99999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 009714 99 DYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTV 178 (528)
Q Consensus 99 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ln~~g~~~~~~~~~i~~~ 178 (528)
.+....+..+...+.|...++. +.+.+ ...++++++...+|++|+|..+++|.+++.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~-------~~~~~----------------~~~~~~~~l~~~ln~~gv~~~~~~~~~~~~ 154 (457)
T PRK10580 98 EILIVAIADVTAFGIYMGVWFP-------TVPHW----------------IWVLSVVLIICAVNLMSVKVFGELEFWFSF 154 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHhCC-------CCChH----------------HHHHHHHHHHHHHHHccchhHHHHHHHHHH
Confidence 9988777777777777665421 12222 245566778899999999999999999999
Q ss_pred HHHHHHHHHHhhhcc-------cc-ccc---C-CC--CCCCCChHHHHHHHHHHHHhhhhhHHHhhhhhhhcCCCCchhH
Q 009714 179 VKVIIVIVVIFAGAF-------EV-DVS---N-WS--PFAPNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPI 244 (528)
Q Consensus 179 ~~i~~l~~~~i~~~~-------~~-~~~---~-~~--~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~k~p~k~ip~ 244 (528)
+|++.++++++.+.. +. +.. + ++ ++.|+++.+++.++...+|+|.|+|.+++++||+|||+||+||
T Consensus 155 ~~~~~l~~~ii~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~fsf~G~e~~~~~a~E~knP~k~iPr 234 (457)
T PRK10580 155 FKVATIIIMIVAGIGIIIWGIGNGGQPTGIHNLWSNGGFFSNGWLGMVMSLQMVMFAYGGIEIIGITAGEAKDPEKSIPR 234 (457)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCCCCccccCCCCCCCCcchHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhhHHHH
Confidence 998887776554321 10 111 1 11 2446677788999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccCC-CCcHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhc
Q 009714 245 GILGSLLICAALYVGVSLVLTGMVPYKFLD-EDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGR 323 (528)
Q Consensus 245 ai~~s~~~~~i~y~l~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~a~a~ 323 (528)
|+..+.+.+.++|++..+......|.+++. +++|+.++++..+.++...++.+..+.+.+++.|+.+++.||++++|||
T Consensus 235 Ai~~~~~~~~~~y~~~~~~~~~~~p~~~i~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~ar 314 (457)
T PRK10580 235 AINSVPMRILVFYVGTLFVIMSIYPWNQVGTNGSPFVLTFQHMGITFAASILNFVVLTASLSAINSDVFGVGRMLHGMAE 314 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHheecccCCCCccCChHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999988888888775 4578888888888888888888888999999999999999999999999
Q ss_pred CCCCchhhhhhcCCcccchHHHHHHHHHHHHHHHhh------CHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCc
Q 009714 324 DGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLF------NVRVLSHILSVGTLTGYSVVSACVIALRWKDRTSRNDS 397 (528)
Q Consensus 324 dg~lP~~~~~~n~r~~~P~~a~l~~~~i~~~~~~~~------~~~~l~~~~~~~~l~~y~~~~~~~~~~r~~~~~~~~~~ 397 (528)
||.+||+++|+| |+|+|++|++++.++..+..... .++.+.++.+...++.|.+.+++.+++|+++++.+
T Consensus 315 dg~lP~~~~kv~-~~~~P~~Ai~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~lr~~~~~~~--- 390 (457)
T PRK10580 315 QGSAPKIFSKTS-RRGIPWVTVLVMTTALLFAVYLNYIMPENVFLVIASLATFATVWVWIMILLSQIAFRRRLPPEE--- 390 (457)
T ss_pred CCCcCHHHHhhC-CCCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---
Confidence 999999999999 68999999988876544422221 14577888888889999999999999998765421
Q ss_pred ccccccchhhHHHHHHHHHhhhhcchhhccchhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCccchhHHHHHHHHH
Q 009714 398 SRLTSAWRQGVICLIIIACCGFGAGLFYRINASYILLIVAVVIAVLASAMLCLRHGYSDPPGFSCPGVPLLPAVSIFFNL 477 (528)
Q Consensus 398 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~ 477 (528)
.++++||.|..|+.+.++++.+.
T Consensus 391 ---------------------------------------------------------~~~~~f~~~~~~~~~~~~~~~~~ 413 (457)
T PRK10580 391 ---------------------------------------------------------VKALKFKVPGGVATTIGGLIFLV 413 (457)
T ss_pred ---------------------------------------------------------CCCCCcccCCccHHHHHHHHHHH
Confidence 12568999999999999999888
Q ss_pred HHHhcC-----CHHHHHHHHHHHHHHHHHHHhhc
Q 009714 478 FLFAQL-----HYEAWWRFVILSFISIGLYAFYG 506 (528)
Q Consensus 478 ~~~~~~-----~~~~~~~~~~~~~~g~~~y~~~~ 506 (528)
+.+..+ +.........+++++.+.|..++
T Consensus 414 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~y~~~~ 447 (457)
T PRK10580 414 FIIGLIGYHPDTRISLYVGFAWIVLLLIGWMFKR 447 (457)
T ss_pred HHHHHHHHCccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 865432 22345677788888888888654
No 14
>PRK10836 lysine transporter; Provisional
Probab=100.00 E-value=2.7e-48 Score=409.53 Aligned_cols=371 Identities=18% Similarity=0.251 Sum_probs=297.7
Q ss_pred ccCcccccCCCChH-HHHHHHHHHHHHHHHHHHHHHHhccCCCCCCchhhhhHHHhchhHHHHHHHHHHHHHHHHHHHHH
Q 009714 30 LSPVPWLATPVQVR-VTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIA 108 (528)
Q Consensus 30 ~~~~~~~~~~~G~~-~~l~~~l~~l~~~~~a~~~ael~~~~P~~~Gg~y~~~~~~~g~~~gf~~gw~~~l~~~~~~a~~~ 108 (528)
+...+...+.+||. ++++|+++++++++.+++|+||++++|+ +||.|.|+++.+||..||.+||.+|+.+....+...
T Consensus 36 f~~~g~~~~~aGp~~~l~a~~i~g~~~~~~al~~aEL~s~~P~-sGg~y~y~~~~~g~~~gf~~Gw~~~~~~~~~~a~~~ 114 (489)
T PRK10836 36 FVASGATISQAGPGGALLSYMLIGLMVYFLMTSLGELAAYMPV-SGSFATYGQNYVEEGFGFALGWNYWYNWAVTIAVDL 114 (489)
T ss_pred hHhhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334567778984 8999999999999999999999999999 999999999999999999999999998877665444
Q ss_pred HHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 009714 109 RSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVI 188 (528)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ln~~g~~~~~~~~~i~~~~~i~~l~~~~ 188 (528)
.....++..+. + ..+.| ..+.+++++.+.+|++|+|..+++|++++..|+..++.++
T Consensus 115 ~a~~~~~~~~~---~----~~~~~----------------~~~~~~~~~~~~lN~~gv~~~~~~~~~~~~~ki~~~~~~i 171 (489)
T PRK10836 115 VAAQLVMSWWF---P----DTPGW----------------IWSALFLGVIFLLNYISVRGFGEAEYWFSLIKVTTVIVFI 171 (489)
T ss_pred HHHHHHhhhcC---C----CCchH----------------HHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHH
Confidence 43333333221 1 11211 2456667778899999999999999999999988877766
Q ss_pred hhhccc------c----cccCCCC---CCCCChHHHHHHHHHHHHhhhhhHHHhhhhhhhcCCCCchhHHHHHHHHHHHH
Q 009714 189 FAGAFE------V----DVSNWSP---FAPNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAA 255 (528)
Q Consensus 189 i~~~~~------~----~~~~~~~---~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~k~p~k~ip~ai~~s~~~~~i 255 (528)
+.++.. . +.+|+++ ..++++.++..+....+|+|.|+|.+++++||+|||+||+|||+..++..+.+
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~knP~r~iPrAi~~~~~~v~~ 251 (489)
T PRK10836 172 IVGVLMIIGIFKGAEPAGWSNWTIGDAPFAGGFAAMIGVAMIVGFSFQGTELIGIAAGESEDPAKNIPRAVRQVFWRILL 251 (489)
T ss_pred HHHHHHHHcCCCCCCCCccccCCCCCCCCcccHHHHHHHHHHHHHHHccHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 544321 1 1223321 12346666776666778999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccccccCC---------CCcHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCCC
Q 009714 256 LYVGVSLVLTGMVPYKFLD---------EDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGL 326 (528)
Q Consensus 256 ~y~l~~~~~~~~~~~~~~~---------~~~p~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~ 326 (528)
+|++.........|.++.+ ..+|+.++++..+.+....++.+..+++.+++.|+.+++.||++++|||||.
T Consensus 252 ~Yvl~~~~~~~~vp~~~~~~~~~~~~~~~~sp~~~~~~~~g~~~~~~ii~~~il~a~~~~~n~~~~~~sR~l~a~Ardg~ 331 (489)
T PRK10836 252 FYVFAILIISLIIPYTDPSLLRNDVKDISVSPFTLVFQHAGLLSAAAVMNAVILTAVLSAGNSGMYASTRMLYTLACDGK 331 (489)
T ss_pred HHHHHHHHHheecCCCChhhhccccccccCCcHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 9999999998888865421 2478889999988888888999999999999999999999999999999999
Q ss_pred CchhhhhhcCCcccchHHHHHHHHHHHHHHHhhC------HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCcccc
Q 009714 327 LPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLFN------VRVLSHILSVGTLTGYSVVSACVIALRWKDRTSRNDSSRL 400 (528)
Q Consensus 327 lP~~~~~~n~r~~~P~~a~l~~~~i~~~~~~~~~------~~~l~~~~~~~~l~~y~~~~~~~~~~r~~~~~~~~~~~~~ 400 (528)
+|++|+|+| |+|+|++|++++.+++.+..+... ++.+.++.+...++.|.+.+++.+++|++.++++
T Consensus 332 lP~~~~kv~-~~~~P~~All~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~a~l~~R~~~~~~~------ 404 (489)
T PRK10836 332 APRIFAKLS-RGGVPRNALYATTVIAGLCFLTSMFGNQTVYLWLLNTSGMTGFIAWLGIAISHYRFRRGYVLQG------ 404 (489)
T ss_pred cCHHHHhhC-CCCCcHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------
Confidence 999999999 779999999999988876655421 3457777888889999999999999987643221
Q ss_pred cccchhhHHHHHHHHHhhhhcchhhccchhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCccchhHHHHHHHHHHHH
Q 009714 401 TSAWRQGVICLIIIACCGFGAGLFYRINASYILLIVAVVIAVLASAMLCLRHGYSDPPGFSCPGVPLLPAVSIFFNLFLF 480 (528)
Q Consensus 401 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~ 480 (528)
++.++++||.|+.|+.|+++++.+++++
T Consensus 405 ----------------------------------------------------~~~~~~p~~~p~~p~~~~~~~~~~~~~~ 432 (489)
T PRK10836 405 ----------------------------------------------------HDLNDLPYRSGFFPLGPIFAFVLCLIIT 432 (489)
T ss_pred ----------------------------------------------------CCcCCCCCcCCCccHHHHHHHHHHHHHH
Confidence 1112478999999999999999999987
Q ss_pred hcC
Q 009714 481 AQL 483 (528)
Q Consensus 481 ~~~ 483 (528)
...
T Consensus 433 ~~~ 435 (489)
T PRK10836 433 LGQ 435 (489)
T ss_pred HHH
Confidence 754
No 15
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=100.00 E-value=5.1e-48 Score=406.00 Aligned_cols=420 Identities=20% Similarity=0.265 Sum_probs=334.7
Q ss_pred cCCCcCccccccccccccccccccCcccccCCCCh-HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCchhhhhHHHhch
Q 009714 8 GGSDSSNWCSSASARLLAPEYSLSPVPWLATPVQV-RVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNE 86 (528)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~-~~~l~~~l~~l~~~~~a~~~ael~~~~P~~~Gg~y~~~~~~~g~ 86 (528)
+++-+.........+.+-+...+...+.+.+.+|| ..+++|+++++++++.+++|+|+++++|+++||.|+|++|.+||
T Consensus 6 ~~~l~~~~~~~l~ig~vIGsGif~~~~~~~~~~g~~~~~~~wli~~~~~~~~al~~aEl~s~~P~~sGG~y~y~~~~~G~ 85 (473)
T TIGR00905 6 SKKLGLFALTALVIGSMIGSGIFSLPQNLASVAGPGAVIIGWIITGVGMLALAFVFAILATKKPELDGGIYAYAREGFGP 85 (473)
T ss_pred CCCccHHHHHHHHHHHHHhHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhhHHhHccc
Confidence 33444444444444555444333333345667788 57899999999999999999999999997579999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhhh
Q 009714 87 LTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGV 166 (528)
Q Consensus 87 ~~gf~~gw~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ln~~g~ 166 (528)
.+||.+||.+|+.+.......+....+++..+++.+ +.. ++....+.+++++++.+.+|++|+
T Consensus 86 ~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~p~~---~~~--------------~~~~~~~~~~~~~~~~~~ln~~Gi 148 (473)
T TIGR00905 86 YIGFMSGWGYWLSAWIGNVAYAVLLFSALGYFFPLF---GSG--------------NPVPSILGASVLLWVFTFLVLRGV 148 (473)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---cCC--------------CcHHHHHHHHHHHHHHHHHHHhCH
Confidence 999999999999988877777777777776654311 110 122334567777888999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCC-CC----C---CCChHHHHHHHHHHHHhhhhhHHHhhhhhhhcCC
Q 009714 167 GESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWS-PF----A---PNGFKEILTGATVVFFAYVGFDAVANSAEESKKP 238 (528)
Q Consensus 167 ~~~~~~~~i~~~~~i~~l~~~~i~~~~~~~~~~~~-~~----~---~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~k~p 238 (528)
|..+++|++.+.+|+++++++++.+....+.+++. ++ . ++++.++..++...+|+|.|+|.+++++||+||
T Consensus 149 ~~~~~i~~~~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~- 227 (473)
T TIGR00905 149 RQAAFINTITTIAKLIPLFLFIIIGWFWFKLDLFTADFWGHDVPSLGSVFSQVKNTMLVTLWVFIGIEGAVVSSGRAKN- 227 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhcccccCccCCCcccchHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc-
Confidence 99999999999999999888887775543333221 11 1 124567888899999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhccccccCC-CCcH-HHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 009714 239 QRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLD-EDAP-LSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSR 316 (528)
Q Consensus 239 ~k~ip~ai~~s~~~~~i~y~l~~~~~~~~~~~~~~~-~~~p-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR 316 (528)
+||+||++..+..+++++|++...+.....|.+++. +++| ..++.+...+++...++.+..+++.+++.++.+.+.||
T Consensus 228 ~r~iPrai~~~~~i~~~~Yil~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~g~~~~~~i~i~~~is~~~~~~~~~~~~sR 307 (473)
T TIGR00905 228 KSDVGKATVLGTLGALVIYILITLLSLGVLPQQELANLPNPSMAAVLEMIVGKWGAVLISLGLIISVLGSLLSWTMLAAE 307 (473)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHhhCCCchHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988888764 4678 77888888888888899999999999999999999999
Q ss_pred HHHHhhcCCCCchhhhhhcCCcccchHHHHHHHHHHHHHHHh-----hCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC
Q 009714 317 LYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGL-----FNVRVLSHILSVGTLTGYSVVSACVIALRWKDR 391 (528)
Q Consensus 317 ~l~a~a~dg~lP~~~~~~n~r~~~P~~a~l~~~~i~~~~~~~-----~~~~~l~~~~~~~~l~~y~~~~~~~~~~r~~~~ 391 (528)
++++|||||.+|++++|+|| +|+|++|+++..+++.++.+. .+++.+.++.++..++.|.+++++.+++|+|++
T Consensus 308 ~~~amardg~lP~~~~~v~~-~~tP~~Ai~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~a~~~lr~~~~ 386 (473)
T TIGR00905 308 VPFSAAKDGLFPKIFGRVNK-NGAPSVALLLTNILIQLFLLLTLLTSSAYNVLVSLAVVMILVPYLLSAAYLLKLAKVGT 386 (473)
T ss_pred HHHHHHhCCChhHHHHhhCc-cCCCHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999995 599999999998887655443 246788888889999999999999999987652
Q ss_pred CCCCCcccccccchhhHHHHHHHHHhhhhcchhhccchhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCccchhHHH
Q 009714 392 TSRNDSSRLTSAWRQGVICLIIIACCGFGAGLFYRINASYILLIVAVVIAVLASAMLCLRHGYSDPPGFSCPGVPLLPAV 471 (528)
Q Consensus 392 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~p~~~~~ 471 (528)
.. + .+.|..++++++
T Consensus 387 ~~----------------------------------------------------------------~-~~~~~~~~~~~l 401 (473)
T TIGR00905 387 YP----------------------------------------------------------------K-IKNRKALIVGVI 401 (473)
T ss_pred cc----------------------------------------------------------------c-cccchHHHHHHH
Confidence 11 0 122345688888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhcccccC
Q 009714 472 SIFFNLFLFAQLHYEAWWRFVILSFISIGLYAFYGQYHAD 511 (528)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~~~ 511 (528)
+++.+.++....++.+.....+++++|+.+|..+.+++++
T Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~~~ 441 (473)
T TIGR00905 402 ACVYSIWLLYAAGLKYLLLGFILYAPGIIFYGRARKERGK 441 (473)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 8888888888778777778888899999999976665543
No 16
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=100.00 E-value=7e-48 Score=403.43 Aligned_cols=336 Identities=21% Similarity=0.313 Sum_probs=283.3
Q ss_pred cccccCCCChHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCchhhhhHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009714 33 VPWLATPVQVRVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLA 112 (528)
Q Consensus 33 ~~~~~~~~G~~~~l~~~l~~l~~~~~a~~~ael~~~~P~~~Gg~y~~~~~~~g~~~gf~~gw~~~l~~~~~~a~~~~~~~ 112 (528)
.+...+.+||..+++|++++++.++.+++++||++++|+ +||.|.|+++.+||.+||.+||.+|+++....++.+...+
T Consensus 36 ~g~~~~~~G~~~~i~~~i~~v~~~~~a~~~aEl~s~~P~-~Gg~~~~~~~~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~ 114 (452)
T TIGR01773 36 SGSAIASAGPAALLAYLLAGLLVVFIMRMLGEMAVANPD-TGSFSTYADDAIGRWAGFTIGWLYWWFWVLVIPLEAIAAA 114 (452)
T ss_pred hHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566789989999999999999999999999999999 9999999999999999999999999999999999888888
Q ss_pred HHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 009714 113 SYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGA 192 (528)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ln~~g~~~~~~~~~i~~~~~i~~l~~~~i~~~ 192 (528)
+++..+++ ..+.| +++.+++++.+.+|++|+|..+++|++.+.+|++.++.+++.+.
T Consensus 115 ~~l~~~~~-------~~~~~----------------~~~~~~~~~~~~~n~~gv~~~~~~~~~~~~~ki~~l~~~ii~~~ 171 (452)
T TIGR01773 115 GILQYWFP-------DIPLW----------------LFSLILTIVLTLTNLYSVKSYGEFEFWFALIKVIAIIAFIILGA 171 (452)
T ss_pred HHHHHhcC-------cCcHH----------------HHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 88776532 11222 36778888889999999999999999999999988877666543
Q ss_pred cc-------ccc---cCC---CCCCCCChHHHHHHHHHHHHhhhhhHHHhhhhhhhcCCCCchhHHHHHHHHHHHHHHHH
Q 009714 193 FE-------VDV---SNW---SPFAPNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVG 259 (528)
Q Consensus 193 ~~-------~~~---~~~---~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~k~p~k~ip~ai~~s~~~~~i~y~l 259 (528)
.. .+. +++ +++.|+++.++..++...+|+|.|+|.+++++||+|||+||+|||+..+...+.++|++
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~~~~af~G~e~~~~~a~E~k~P~r~iPrAi~~~~~~~~~~y~l 251 (452)
T TIGR01773 172 VAIFGFAPGSEVSGFSNLTGKGGFFPNGIGAVLLAILVTMFSFMGTEIVTIAAAESSNPIKSITRATNSVIWRIIVFYLG 251 (452)
T ss_pred HHHHcCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhccHHHHhHHHHhhcChhhHHHHHHHHHHHHHHHHHHH
Confidence 21 111 111 23446677789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccccccCC--CCcHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCCCCchhhhhhcCC
Q 009714 260 VSLVLTGMVPYKFLD--EDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPK 337 (528)
Q Consensus 260 ~~~~~~~~~~~~~~~--~~~p~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~~~~~n~r 337 (528)
.........|.|+.+ +.+|+.++.+..+++....++.+..+++.+++.|+.+++.||++++|||||.+||+|+|+| |
T Consensus 252 ~~~~~~~~~p~~~~~~~~~~p~~~~~~~~g~~~~~~ii~~~~~~~~~~~~~~~~~~~sR~~~a~ardg~lP~~~~~v~-~ 330 (452)
T TIGR01773 252 SIFIVVALLPWNSPNLLEVGSYVAVLELLGIPHAKLIMDFVVLTAVLSCLNSALYTTSRMLYSLAERGDAPRVFMKLN-K 330 (452)
T ss_pred HHHHHeeEeCCCCcccccCCcHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCHHHHhhC-C
Confidence 988888887766543 3348888888888888888899999999999999999999999999999999999999999 7
Q ss_pred cccchHHHHHHHHHHHHHHHhh--C----HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCC
Q 009714 338 RHTPVHSQVWVGIVAGILAGLF--N----VRVLSHILSVGTLTGYSVVSACVIALRWKDRTS 393 (528)
Q Consensus 338 ~~~P~~a~l~~~~i~~~~~~~~--~----~~~l~~~~~~~~l~~y~~~~~~~~~~r~~~~~~ 393 (528)
+++|++|+++..+++.+..+.. + ++.+.+..+...++.|.+.+.+.+++|+++|+.
T Consensus 331 ~~~P~~Ail~~~~~~~~~~l~~~~~~~~~f~~l~~~~~~~~~~~y~~~~~~~i~~r~~~~~~ 392 (452)
T TIGR01773 331 KGVPVQAVLASTFFSFLTVVVNYFAPDKVFLFLVNSSGAIALLVYLVIAVSQLRMRKKLKAN 392 (452)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8999999999888877655442 1 345666677777899999999999998876653
No 17
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=100.00 E-value=1e-47 Score=399.43 Aligned_cols=383 Identities=18% Similarity=0.236 Sum_probs=309.9
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCchhhhhHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009714 38 TPVQVRVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVS 117 (528)
Q Consensus 38 ~~~G~~~~l~~~l~~l~~~~~a~~~ael~~~~P~~~Gg~y~~~~~~~g~~~gf~~gw~~~l~~~~~~a~~~~~~~~~~~~ 117 (528)
..+||.++++|+++++.+++.+++++||++++|+ +||.|.|++| +||.+||.++|.+|..........+.....|+..
T Consensus 33 a~~G~~~i~~wli~~~~~l~~al~~aEL~s~~P~-~GG~y~y~~~-~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~y~~~ 110 (435)
T PRK10435 33 ASIGSIAIWGWIISIIGAMSLAYVYARLATKNPQ-QGGPIAYAGE-ISPAFGFQTGVLYYHANWIGNLAIGITAVSYLST 110 (435)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC-CCChhHHHHH-HCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578999999999999999999999999999999 9999999999 8999999999999987666666666677777765
Q ss_pred HHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Q 009714 118 ILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDV 197 (528)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ln~~g~~~~~~~~~i~~~~~i~~l~~~~i~~~~~~~~ 197 (528)
++ |...+ +....+++++++++.+.+|.+|+|..++++++..++++++++.+++.+..+.++
T Consensus 111 ~~---p~~~~----------------~~~~~~~~~~i~~~~~~ln~~gvk~~~~i~~i~~~~~li~~~~~~i~g~~~~~~ 171 (435)
T PRK10435 111 FF---PVLND----------------PIPAGIACIAIVWVFTFVNMLGGTWVSRLTTIGLVLVLIPVVGTAIVGWHWFDA 171 (435)
T ss_pred Hc---cccCC----------------hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCH
Confidence 43 21111 112234566777889999999999999999999988888777766666544443
Q ss_pred c----CCCCCCCCChHHHHHHHHHHHHhhhhhHHHhhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhccccccC
Q 009714 198 S----NWSPFAPNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFL 273 (528)
Q Consensus 198 ~----~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~k~p~k~ip~ai~~s~~~~~i~y~l~~~~~~~~~~~~~~ 273 (528)
+ ++++..++++.++..++...+|+|.|+|.+++++||+|||+||+|||+..+..++.++|++..+......|+++.
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~a~~~~~faf~G~E~~~~~a~E~knP~r~iPrAi~~~~~iv~ilYil~~~~~~~~~p~~~~ 251 (435)
T PRK10435 172 ATYAANWNTSDTTDGHAIIKSILLCLWAFVGVESAAVSTGMVKNPKRTVPLATMLGTGLAGIIYIAATQVISGMFPASVM 251 (435)
T ss_pred HhhcccccCCCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCccccccHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 3 333333456778999999999999999999999999999999999999999999999999999999999999887
Q ss_pred -CCCcHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCCCCchhhhhhcCCcccchHHHHHHHHHH
Q 009714 274 -DEDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVA 352 (528)
Q Consensus 274 -~~~~p~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~~~~~n~r~~~P~~a~l~~~~i~ 352 (528)
++++|+.+++++..+++...++.+..+++++++.+++++..+|..+++||||.+||+|+|+| |+|+|++|++++.++.
T Consensus 252 ~~~~~p~~~~~~~~~g~~~~~~i~~~~~i~~l~~~~~~~~~~~r~~~~~ardG~lP~~f~k~n-k~g~P~~Al~~~~~~~ 330 (435)
T PRK10435 252 AASGAPFAISASTILGNWAAPLVSAFTAFACLTSLGSWMMLVGQAGVRAANDGNFPKVYGEVD-KNGIPKKGLLLAAVKM 330 (435)
T ss_pred hcCCCcHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHhhC-cCCCCHHHHHHHHHHH
Confidence 46789999999888888889999889999999999999999999999999999999999999 8999999999988776
Q ss_pred HHHHHh----h--------CHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCcccccccchhhHHHHHHHHHhhhh
Q 009714 353 GILAGL----F--------NVRVLSHILSVGTLTGYSVVSACVIALRWKDRTSRNDSSRLTSAWRQGVICLIIIACCGFG 420 (528)
Q Consensus 353 ~~~~~~----~--------~~~~l~~~~~~~~l~~y~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 420 (528)
.++... . .++.+.++.+...++.|.+++++.+++|+ ++
T Consensus 331 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~y~~~~~~~ir~~~--~~---------------------------- 380 (435)
T PRK10435 331 TALMILITLMNSSGGKASDLFGELTGIAVLLTMLPYFYSCVDLIRFEG--VN---------------------------- 380 (435)
T ss_pred HHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--Cc----------------------------
Confidence 554321 1 24677888888889999999999875542 21
Q ss_pred cchhhccchhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 009714 421 AGLFYRINASYILLIVAVVIAVLASAMLCLRHGYSDPPGFSCPGVPLLPAVSIFFNLFLFAQLHYEAWWRFVILSFISIG 500 (528)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 500 (528)
+|.+..|+.+.++.+.+++.+. ..+|.....++.++.+
T Consensus 381 ---------------------------------------~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 418 (435)
T PRK10435 381 ---------------------------------------IRNFVSLICSVLGCVFCFIALM---GASSFELAGTFIVSLI 418 (435)
T ss_pred ---------------------------------------hhHHHHHHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHH
Confidence 1122234555555555555444 4467788888888888
Q ss_pred HHHhhcccccCCCC
Q 009714 501 LYAFYGQYHADPSS 514 (528)
Q Consensus 501 ~y~~~~~~~~~~~~ 514 (528)
.|+.|++||.++..
T Consensus 419 ~~~~~~~~~~~~~~ 432 (435)
T PRK10435 419 ILMFYARKMHERQS 432 (435)
T ss_pred HHHHHHHHhcchhc
Confidence 99989888876543
No 18
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=100.00 E-value=1.8e-47 Score=403.31 Aligned_cols=401 Identities=18% Similarity=0.241 Sum_probs=317.4
Q ss_pred ccCcccccCCCCh-HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCchhhhhHHHhchhHHHHHHHHHHHHHHHHHHHHH
Q 009714 30 LSPVPWLATPVQV-RVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIA 108 (528)
Q Consensus 30 ~~~~~~~~~~~G~-~~~l~~~l~~l~~~~~a~~~ael~~~~P~~~Gg~y~~~~~~~g~~~gf~~gw~~~l~~~~~~a~~~ 108 (528)
+...+...+.+|| +.+++|+++++++++.+++++||++++|+++||.|.|+++.+||.+||.+||.+|++|....+..+
T Consensus 23 f~~~~~~~~~~Gp~~~i~~~~i~~~~~~~~a~~~aEl~s~~P~~gG~~~~~~~~~~g~~~gf~~gw~~~~~~~~~~~~~~ 102 (478)
T TIGR00913 23 LVGSGTALATGGPAGLLIGYAIMGSIIYCVMQSLGEMATFYPVVSGSFATYASRFVDPAFGFAVGWNYWLQWLIVLPLEL 102 (478)
T ss_pred hhcchhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455667888 579999999999999999999999999952567778999999999999999999999999999998
Q ss_pred HHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 009714 109 RSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVI 188 (528)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ln~~g~~~~~~~~~i~~~~~i~~l~~~~ 188 (528)
...+.++..+.. ..+.+ ....+++++.+++|++|+|..+++|++.+.+|++.++.++
T Consensus 103 ~~~~~~~~~~~~-------~~~~~----------------~~~~~~~~~~~~in~~gv~~~~~~~~~~~~~ki~~l~~~i 159 (478)
T TIGR00913 103 VTASMTIQYWTD-------KVNPA----------------VWIAIFYVFIVIINLFGVKGYGEAEFWFSSIKILAIIGFI 159 (478)
T ss_pred HHHHHHHHHcCC-------CCCHH----------------HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 888887764311 11111 1234556677899999999999999999999988777766
Q ss_pred hhhcccc--c--------ccCC---CCCCCC----ChHHHHHHHHHHHHhhhhhHHHhhhhhhhcCCCCchhHHHHHHHH
Q 009714 189 FAGAFEV--D--------VSNW---SPFAPN----GFKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLL 251 (528)
Q Consensus 189 i~~~~~~--~--------~~~~---~~~~~~----~~~~~~~~~~~~~~~f~G~e~~~~~a~E~k~p~k~ip~ai~~s~~ 251 (528)
+.++... + ..++ +.+.|. ++.++..++...+|+|.|+|.+++++||+|||+||+|||+..+..
T Consensus 160 i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~r~iPrai~~~~~ 239 (478)
T TIGR00913 160 ILSIILNCGGGPNHGYIGFRYWHDPGAFAGGTIGGRFKGVCSVFVTAAFSFGGTELVALTAGEAANPRKSIPRAAKRTFW 239 (478)
T ss_pred HHHHHHHHcCCCCCCCCcccccCCCCCCCCCCccchHHHHHHHHHHHHhhhccHHHHHHHHHhhcChhhHHHHHHHHHHH
Confidence 6543211 0 1111 123222 266788899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcccccc--C-C-------CCcHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Q 009714 252 ICAALYVGVSLVLTGMVPYKF--L-D-------EDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGL 321 (528)
Q Consensus 252 ~~~i~y~l~~~~~~~~~~~~~--~-~-------~~~p~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~a~ 321 (528)
++.++|++..+......|.++ + + ..+|+..+++..+.++...++.+..+++.+++.|+.+++.||++++|
T Consensus 240 ~~~~~Y~l~~~~~~~~~p~~~~~l~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~s~~~~~~~~~~~~sR~l~a~ 319 (478)
T TIGR00913 240 RILVFYILTLFLIGFLVPYNDPRLLSSSSSSDSAASPFVIAIQNHGIKVLPHIFNAVILISVLSAANSSLYASSRTLYAL 319 (478)
T ss_pred HHHHHHHHHHHHheeeccCCChhhcccccCCCcCCCcHHHHHHHcCCchHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999999999888887888654 2 1 13688877888888888889999999999999999999999999999
Q ss_pred hcCCCCchhhhhhcCCcccchHHHHHHHHHHHHHHHhh------CHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCC
Q 009714 322 GRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLF------NVRVLSHILSVGTLTGYSVVSACVIALRWKDRTSRN 395 (528)
Q Consensus 322 a~dg~lP~~~~~~n~r~~~P~~a~l~~~~i~~~~~~~~------~~~~l~~~~~~~~l~~y~~~~~~~~~~r~~~~~~~~ 395 (528)
||||.+|++|+|+| |+++|++|+++..+++.+..+.. .++.+.++.+...++.|.+.+++.+++|++++++++
T Consensus 320 ardg~lP~~f~k~~-~~~~P~~Ai~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~~~i~~r~~~~~~~~ 398 (478)
T TIGR00913 320 AHQGLAPKIFAYVD-RRGVPYVAVIVSSLFGLLAFLAVSKKEAEVFTWLLNISGLSGFFTWMCICLSHIRFRKAMKAQGR 398 (478)
T ss_pred HhCCcccHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999 78999999999988866543332 246677888888899999999999999977554321
Q ss_pred CcccccccchhhHHHHHHHHHhhhhcchhhccchhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCccchhHHHHHHH
Q 009714 396 DSSRLTSAWRQGVICLIIIACCGFGAGLFYRINASYILLIVAVVIAVLASAMLCLRHGYSDPPGFSCPGVPLLPAVSIFF 475 (528)
Q Consensus 396 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~ 475 (528)
.+.+++||.|..|+.+.++++.
T Consensus 399 ----------------------------------------------------------~~~~~p~~~~~~~~~~~~~~~~ 420 (478)
T TIGR00913 399 ----------------------------------------------------------SLDELPYKSQTGPYGSYYALFF 420 (478)
T ss_pred ----------------------------------------------------------CcccCCccCCCcchHHHHHHHH
Confidence 1126789999999999998888
Q ss_pred HHHHHhc----------CCHHHHHHHHHHHHHHHHHHHhhcccccCC
Q 009714 476 NLFLFAQ----------LHYEAWWRFVILSFISIGLYAFYGQYHADP 512 (528)
Q Consensus 476 ~~~~~~~----------~~~~~~~~~~~~~~~g~~~y~~~~~~~~~~ 512 (528)
+++.... .+..+.....+...+.+++|..|+.+++++
T Consensus 421 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (478)
T TIGR00913 421 NILILIAQGYVAFAPVKFSAKSFFEAYLSLPIFIALYIGHKVYKRDK 467 (478)
T ss_pred HHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 8776442 245556666666777777887776665443
No 19
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=100.00 E-value=9.1e-48 Score=377.53 Aligned_cols=391 Identities=21% Similarity=0.306 Sum_probs=337.4
Q ss_pred ccccCCCChHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCchhhhhHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009714 34 PWLATPVQVRVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLAS 113 (528)
Q Consensus 34 ~~~~~~~G~~~~l~~~l~~l~~~~~a~~~ael~~~~P~~~Gg~y~~~~~~~g~~~gf~~gw~~~l~~~~~~a~~~~~~~~ 113 (528)
+...+.+||+++++|+++|++.+.+.-.+.||...-|+ +|+.-+|+++.+||+.||.+||.||+.|+....+...+.+.
T Consensus 38 g~~I~~AGPSvlLaY~I~G~~~f~iMRaLGEm~~~~p~-~gSF~~~a~~~lG~~Agf~tgW~YW~~wv~v~~ae~tAi~~ 116 (462)
T COG1113 38 GSAIAMAGPSVLLAYLIAGIFVFLIMRALGEMLVANPV-SGSFSDYARKYLGPWAGFLTGWTYWFFWVLVGIAELTAIGI 116 (462)
T ss_pred chhhhhhCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCcHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44677899999999999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 009714 114 YVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAF 193 (528)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ln~~g~~~~~~~~~i~~~~~i~~l~~~~i~~~~ 193 (528)
|++.++. ..|.|. .+++.+++...+|..++|.++..+..++.+|+..++.+++.|..
T Consensus 117 y~~~WfP-------~vP~Wv----------------~al~~~~l~~~~NL~sVk~FGE~EfWfAlIKV~aIi~~Iv~G~~ 173 (462)
T COG1113 117 YLQFWFP-------DVPQWV----------------FALAAVVLLLAVNLISVKVFGELEFWFALIKVAAIIAFIVVGIV 173 (462)
T ss_pred HHHHhcC-------CCcHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998753 336665 78899999999999999999999999999999999999887643
Q ss_pred c-----------ccccCCC---CCCCCChHHHHHHHHHHHHhhhhhHHHhhhhhhhcCCCCchhHHHHHHHHHHHHHHHH
Q 009714 194 E-----------VDVSNWS---PFAPNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVG 259 (528)
Q Consensus 194 ~-----------~~~~~~~---~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~k~p~k~ip~ai~~s~~~~~i~y~l 259 (528)
. .+.+|.. +|+|+|+.+++.++...+|+|.|.|.+...++|+|||+|.+|||+-.......++|+.
T Consensus 174 ll~~g~~~~~~~~g~snl~~hGGffP~G~~g~~~~~~~v~Faf~GiElvGitA~Et~dP~k~ipkAin~V~~RI~iFYvg 253 (462)
T COG1113 174 LLFGGFGGGGGAAGFSNLWDHGGFFPNGFLGFLSALQIVMFAFGGIELVGITAAEAKDPEKAIPKAINSVIWRILIFYVG 253 (462)
T ss_pred HHhhccCCCCCCccccccccCCCcCCCchHHHHHHHHHHHHHHhhHHHHHHHHHhhcChhhHHHHHHhhhhHHHHHHHHH
Confidence 2 1233332 6899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccccccCCC-CcHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCCCCchhhhhhcCCc
Q 009714 260 VSLVLTGMVPYKFLDE-DAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKR 338 (528)
Q Consensus 260 ~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~~~~~n~r~ 338 (528)
..+++....|+++.++ ++|+.+.++..+-+....++++..+.+..+++|+.+++++|++|++|+||..||.++|+| |+
T Consensus 254 sl~vi~~l~PW~~~~~~~SPFV~~f~~iGi~~Aa~i~N~VVLtAa~S~~NSglystsRmL~~la~~g~APk~~~kls-k~ 332 (462)
T COG1113 254 SLFVILSLYPWNQIGEDGSPFVTVFSLIGIPFAAGIMNFVVLTAALSALNSGLYSTSRMLYSLAKQGDAPKAFAKLS-KR 332 (462)
T ss_pred HHHHHheeccccccCCCCCcHHHHHHHcCCcccccceeEEEeechhhcccccccccchHHHHHhhcCcccHhHhhcc-cc
Confidence 9999999999998865 579999999999999999999999999999999999999999999999999999999999 89
Q ss_pred ccchHHHHHHHHHHHHHHHhh------CHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCcccccccchhhHHHHH
Q 009714 339 HTPVHSQVWVGIVAGILAGLF------NVRVLSHILSVGTLTGYSVVSACVIALRWKDRTSRNDSSRLTSAWRQGVICLI 412 (528)
Q Consensus 339 ~~P~~a~l~~~~i~~~~~~~~------~~~~l~~~~~~~~l~~y~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~~~~ 412 (528)
|+|++++++..+...+...+. .++.+.+..+...+..|.++.++.+++|+++++..
T Consensus 333 gVP~~ai~~s~~~~~~~V~Lny~~P~~vF~~v~s~s~~~~l~vW~~I~~s~l~~rk~~~~~~------------------ 394 (462)
T COG1113 333 GVPVNAILLSAVVLLLGVVLNYILPEKVFELVTSSSGLGLLFVWLMILLSQLKLRKAKPAEG------------------ 394 (462)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhcc------------------
Confidence 999999888777655443332 25788888888889999999999999998555442
Q ss_pred HHHHhhhhcchhhccchhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCccchhHHHHHHHHHHHHhcC--CH---HH
Q 009714 413 IIACCGFGAGLFYRINASYILLIVAVVIAVLASAMLCLRHGYSDPPGFSCPGVPLLPAVSIFFNLFLFAQL--HY---EA 487 (528)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~--~~---~~ 487 (528)
++.+||+|+.|+...+.+++.++.+..+ ++ ..
T Consensus 395 -------------------------------------------~~~~fkm~~~p~~~~l~l~fl~~vlv~m~~~~~t~~~ 431 (462)
T COG1113 395 -------------------------------------------KKLKFKMPLYPFTNYLTLAFLAFVLVLMLFDPDTRIS 431 (462)
T ss_pred -------------------------------------------cCcccccccccHHHHHHHHHHHHHHHHHHcCcccchH
Confidence 2667999999999999888887765542 22 23
Q ss_pred HHHHHHHHHHHHHHHHhhccccc
Q 009714 488 WWRFVILSFISIGLYAFYGQYHA 510 (528)
Q Consensus 488 ~~~~~~~~~~g~~~y~~~~~~~~ 510 (528)
.....+|.++-...|..+++|++
T Consensus 432 ~~~~~~~~~~l~i~~~~~~~~~~ 454 (462)
T COG1113 432 LLVGPVWLVLLGIGYLVKRKKKA 454 (462)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhh
Confidence 44455555555545554443333
No 20
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=2e-47 Score=382.75 Aligned_cols=403 Identities=19% Similarity=0.271 Sum_probs=342.3
Q ss_pred cccccccCcccccCCCCh-HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCchhhhhHHHhchhHHHHHHHHHHHHHHHH
Q 009714 25 APEYSLSPVPWLATPVQV-RVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIG 103 (528)
Q Consensus 25 ~~~~~~~~~~~~~~~~G~-~~~l~~~l~~l~~~~~a~~~ael~~~~P~~~Gg~y~~~~~~~g~~~gf~~gw~~~l~~~~~ 103 (528)
+..+-+.++..+ ..+|| +++++|.+.++++++++.+..||+..+|. +|+...|++|..+|.+||..||.||+.|...
T Consensus 61 GTGLfvgsG~~l-~~aGP~g~li~y~i~G~~vy~vm~sLGEma~~~P~-sGsF~~ya~rfvdpa~GFa~gWnYw~~w~v~ 138 (541)
T COG0833 61 GTGLFVGSGKAL-SQAGPAGLLIAYLIIGIMVYFVMQSLGELAVFYPV-SGSFSTYATRFVDPAFGFALGWNYWLNWAVT 138 (541)
T ss_pred ccceeeecchhh-hccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CCchhhhhhhhcCchHHHHHHHHHHHHHHHH
Confidence 333333333334 45777 89999999999999999999999999998 9999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 009714 104 AASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTVVKVII 183 (528)
Q Consensus 104 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ln~~g~~~~~~~~~i~~~~~i~~ 183 (528)
.+....+.+..++.+... ..|.| +...++.++..++|.+|+|..+..+..++.+|++.
T Consensus 139 ~~~El~aa~~vi~yW~p~------~v~~~----------------~w~~iF~~~i~~iN~~~Vk~fGE~Efw~s~iKV~~ 196 (541)
T COG0833 139 LPLELTAASLVIQYWFPD------TVPPW----------------IWIAIFLVLIFLLNLFGVKGFGETEFWFSSIKVLT 196 (541)
T ss_pred hhHHHHHHHHhhhhhcCC------CCChH----------------HHHHHHHHHHHHHHHhcccccceehHHHHHHHHHH
Confidence 999999999988876421 12333 46788889999999999999999999999999999
Q ss_pred HHHHHhhhccc----------ccccCCC--CCCCCChHHHHHHHHHHHHhhhhhHHHhhhhhhhcCCCCchhHHHHHHHH
Q 009714 184 VIVVIFAGAFE----------VDVSNWS--PFAPNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLL 251 (528)
Q Consensus 184 l~~~~i~~~~~----------~~~~~~~--~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~k~p~k~ip~ai~~s~~ 251 (528)
++.+++.++.. ...+.|. ..+++|+.++...+..+.|+|.|.|.+...++|.|||+|++|||+.....
T Consensus 197 ii~Fii~gii~~~Gg~~~~~~ig~~yw~~pg~F~~gf~g~~~v~v~a~Fsf~GtElvgiaAgEs~nP~K~iPkAik~vfw 276 (541)
T COG0833 197 IIGFIILGIIIICGGGPTHGYIGFNYWHDPGAFAGGFKGFCSVFVIAAFSFSGTELVGLAAGESENPRKSIPKAIKQVFW 276 (541)
T ss_pred HHHHHHHHHHHhcCCCCCCCCcceeeecCCCCCCcchHHHHHHHhhheeeeeceeeeeeeecccCCchhhhHHHHHHHHH
Confidence 99998876542 1112232 45678899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccccccC---------CCCcHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhh
Q 009714 252 ICAALYVGVSLVLTGMVPYKFL---------DEDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLG 322 (528)
Q Consensus 252 ~~~i~y~l~~~~~~~~~~~~~~---------~~~~p~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~a~a 322 (528)
.+.++|++..+.+...+|+++- ...+|+..++++.+.+.+..+++...+.+.+++.|+.++++||++++||
T Consensus 277 RIl~FYi~si~~ig~lvPy~dp~Ll~~~~~~~~~SPFvia~~~~Gi~~~~~imNaVIL~svlSa~NS~lYasSR~L~sLA 356 (541)
T COG0833 277 RILLFYILSIFVIGLLVPYNDPRLLGNSSSGVAASPFVIAIKNAGIPVAASIMNAVILTSVLSAANSGLYASSRMLYSLA 356 (541)
T ss_pred HHHHHHHHHHHHheEEccCCCcccccCCcCCccCCChhHhHHhcCCccchHHHHHHHHHHHHHHhhccchHHHHHHHHHH
Confidence 9999999999999999998652 1347999999999999999999999999999999999999999999999
Q ss_pred cCCCCchhhhhhcCCcccchHHHHHHHHHHHHHHHhh------CHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCC
Q 009714 323 RDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLF------NVRVLSHILSVGTLTGYSVVSACVIALRWKDRTSRND 396 (528)
Q Consensus 323 ~dg~lP~~~~~~n~r~~~P~~a~l~~~~i~~~~~~~~------~~~~l~~~~~~~~l~~y~~~~~~~~~~r~~~~~~~~~ 396 (528)
+||..||+|+|+| |+|+|.+|++++.+++.+-.+-. -++++.++.++..++.|...+++.+++|+..+.
T Consensus 357 ~~g~APk~f~~~~-r~GvP~~al~vt~~fg~lafl~~~~~~~~vf~wL~~isg~s~~i~W~~I~~shirFR~A~~~---- 431 (541)
T COG0833 357 KQGKAPKIFAKVD-RRGVPLVALLVTLLFGLLAFLNSSFKETTVFNWLLNISGLSGFIAWGSICLSHIRFRRAMKA---- 431 (541)
T ss_pred hcCCCchHHHhhC-CCCCchHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 9999999999999 88999999999888876644432 258999999999999999999999999976543
Q ss_pred cccccccchhhHHHHHHHHHhhhhcchhhccchhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCccchhHHHHHHHH
Q 009714 397 SSRLTSAWRQGVICLIIIACCGFGAGLFYRINASYILLIVAVVIAVLASAMLCLRHGYSDPPGFSCPGVPLLPAVSIFFN 476 (528)
Q Consensus 397 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~ 476 (528)
+.+..++.+||.|.+|+.|+.+++.|
T Consensus 432 ------------------------------------------------------QG~s~~~L~yks~~~p~g~~~~~~~~ 457 (541)
T COG0833 432 ------------------------------------------------------QGRSLDELPYKSPFGPYGPIYGLILC 457 (541)
T ss_pred ------------------------------------------------------cCCChhhcCccCCCccHHHHHHHHHH
Confidence 22334588999999999999999999
Q ss_pred HHHHhcC----------CHHHHHHHHHHHHHHHHHHHhhccccc
Q 009714 477 LFLFAQL----------HYEAWWRFVILSFISIGLYAFYGQYHA 510 (528)
Q Consensus 477 ~~~~~~~----------~~~~~~~~~~~~~~g~~~y~~~~~~~~ 510 (528)
...+..+ +...+.....-+.+.+++|..|+.+++
T Consensus 458 ~li~i~q~y~af~p~~~~~~~F~~~Yl~~pi~i~~y~~yk~~~k 501 (541)
T COG0833 458 ILILIGQGYVAFFPIGFSAGDFFAAYLGLPIFIAIYIGYKLYKK 501 (541)
T ss_pred HHHHHHcchheeecCCccHHHHHHHHHHHHHHHHHHHHheeEec
Confidence 9887764 333445566666777778888876665
No 21
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=100.00 E-value=8.7e-47 Score=396.01 Aligned_cols=335 Identities=16% Similarity=0.282 Sum_probs=281.9
Q ss_pred ccccCCCChHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCchhhhhHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009714 34 PWLATPVQVRVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLAS 113 (528)
Q Consensus 34 ~~~~~~~G~~~~l~~~l~~l~~~~~a~~~ael~~~~P~~~Gg~y~~~~~~~g~~~gf~~gw~~~l~~~~~~a~~~~~~~~ 113 (528)
+...+.+||+.+++|++++++.++.+++++|+++..|. .|+.|.|+++.+||..||.+||.+++++....+..+...+.
T Consensus 45 g~~~~~aGp~~i~~~~i~~i~~~~~~~s~aEl~s~~~~-~~~~~~ya~~~~g~~~gf~~gW~~~~~~~~~~~a~~~a~~~ 123 (469)
T PRK11049 45 GKTISLAGPSIIFVYMIIGFMLFFVMRAMGELLLSNLE-YKSFSDFASDLLGPWAGYFTGWTYWFCWVVTGIADVVAITA 123 (469)
T ss_pred hHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCcHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567789999999999999999999999999999998 99999999999999999999999999998777777777777
Q ss_pred HHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 009714 114 YVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAF 193 (528)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ln~~g~~~~~~~~~i~~~~~i~~l~~~~i~~~~ 193 (528)
|+..+++ ..+.| ..+.+++++.+.+|++|+|..+++|++.+.+|+..++.+++.++.
T Consensus 124 ~~~~~~p-------~~~~~----------------~~~~~~~~~~~~iN~~g~~~~~~i~~~~~~~kl~~l~~~ii~g~~ 180 (469)
T PRK11049 124 YAQFWFP-------DLSDW----------------VASLAVVLLLLSLNLATVKMFGEMEFWFAMIKIVAIVALIVVGLV 180 (469)
T ss_pred HHHHhcC-------CCcHH----------------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7765421 11112 256667788899999999999999999999999888888877654
Q ss_pred cc-----cc----cCC------CCCCCCChHHHHHHHHHHHHhhhhhHHHhhhhhhhcCCCCchhHHHHHHHHHHHHHHH
Q 009714 194 EV-----DV----SNW------SPFAPNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYV 258 (528)
Q Consensus 194 ~~-----~~----~~~------~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~k~p~k~ip~ai~~s~~~~~i~y~ 258 (528)
.. ++ .++ .++.|+++.+++.++...+|+|.|+|.+++++||+|||+||+||++..+.+.+.++|+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~r~iPrai~~~~~~~~~~y~ 260 (469)
T PRK11049 181 MVAMHFQSPTGVEASFAHLWNDGGMFPKGLSGFFAGFQIAVFAFVGIELVGTTAAETKDPEKSLPRAINSIPIRIIMFYV 260 (469)
T ss_pred HHHcCCCCCCCCCCcccccCCCCCCCcccHHHHHHHHHHHHHHHhcHHHHHHHHHHhcCHhhHHHHHHHHHHHHHHHHHH
Confidence 21 01 111 1345677778999999999999999999999999999999999999988889999999
Q ss_pred HHHHHHHhccccccCC-CCcHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCCCCchhhhhhcCC
Q 009714 259 GVSLVLTGMVPYKFLD-EDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPK 337 (528)
Q Consensus 259 l~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~~~~~n~r 337 (528)
+.........|++++. +++|+.++++..++++...++.+..+++.+++.++.+++.||++++|||||.+|++++|+| |
T Consensus 261 l~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~s~~~~~~~~~~~~sR~l~a~ardg~lP~~~~kv~-~ 339 (469)
T PRK11049 261 FALIVIMSVTPWSSVVPDKSPFVELFVLVGLPAAASVINFVVLTSAASSANSGVFSTSRMLFGLAQEGVAPKAFAKLS-K 339 (469)
T ss_pred HHHHHHeeecCccccCccCCcHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhhC-C
Confidence 9999998888888774 4589999999888888888999999999999999999999999999999999999999999 6
Q ss_pred cccchHHHHHHHHHHHHHH---Hhh-C----HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCC
Q 009714 338 RHTPVHSQVWVGIVAGILA---GLF-N----VRVLSHILSVGTLTGYSVVSACVIALRWKDRTS 393 (528)
Q Consensus 338 ~~~P~~a~l~~~~i~~~~~---~~~-~----~~~l~~~~~~~~l~~y~~~~~~~~~~r~~~~~~ 393 (528)
+|+|++|++++.++..+.. ... + ++.+.++.++...+.|.+...+.+++|+++||.
T Consensus 340 ~~tP~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~a~~~lr~~~p~~ 403 (469)
T PRK11049 340 RAVPAKGLTFSCICLLGGVVLLYVNPSVIGAFTLVTTVSAILFMFVWTIILCSYLVYRKQRPHL 403 (469)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 6999999998877644311 111 2 356666677777899999999999999888775
No 22
>PRK11021 putative transporter; Provisional
Probab=100.00 E-value=1.8e-46 Score=387.81 Aligned_cols=379 Identities=18% Similarity=0.214 Sum_probs=299.8
Q ss_pred ccCcccccCCCChHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCchhhhhHHHhchhHHHHHHHHHHHHHHHHHHHHHH
Q 009714 30 LSPVPWLATPVQVRVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIAR 109 (528)
Q Consensus 30 ~~~~~~~~~~~G~~~~l~~~l~~l~~~~~a~~~ael~~~~P~~~Gg~y~~~~~~~g~~~gf~~gw~~~l~~~~~~a~~~~ 109 (528)
+...+...+.+||.++++|++++++.++.+++++|+++++|+ +||.|.|++|.+||.+||.+||.+++.+....+....
T Consensus 20 f~~~g~~~~~aG~~~~~~~~i~~~~~~~~al~~aEl~s~~P~-aGG~y~y~~~~~G~~~gf~~gw~~~~~~~~~~~~~~~ 98 (410)
T PRK11021 20 FAVPALAALVAGNNSLWAWPLLILLIFPIAIVFARLGRHFPH-AGGPAHFVGMAFGPRLGRVTGWLFLSVIPVGLPAALQ 98 (410)
T ss_pred HHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCCHHHhHHHHhCchhHHHHHHHHHHHHHhhHHHHHH
Confidence 333355677889999999999999999999999999999999 9999999999999999999999999887666655555
Q ss_pred HHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 009714 110 SLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIF 189 (528)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ln~~g~~~~~~~~~i~~~~~i~~l~~~~i 189 (528)
...+|....++. ++ .....++.+++++.+.+|++|+|..+++|++.+.+.+..+..+..
T Consensus 99 ~~~~~~~~~~~~--------~~-------------~~~~~~~~~~~~~~~~ln~~Gv~~~~~~~~~~~~~~~~i~~~~~~ 157 (410)
T PRK11021 99 IAAGFGQALFGW--------SS-------------WQLLLAELLTLALLWLLNLRGASSSANLQTVIALLIVALVVAIWW 157 (410)
T ss_pred HHHHHHHHHcCC--------CC-------------chHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555665544321 00 112246677788889999999999999999988765544433322
Q ss_pred hhcccccccCC--CCCCCCChHHHHHHHHHHHHhhhhhHHHhhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhc
Q 009714 190 AGAFEVDVSNW--SPFAPNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGM 267 (528)
Q Consensus 190 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~k~p~k~ip~ai~~s~~~~~i~y~l~~~~~~~~ 267 (528)
.+ +.+.+++ .+..++++.++..++...+|+|.|+|.+++++||+|||+||+||++..+...+.++|++.+......
T Consensus 158 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~k~iPrAi~~~~~~~~~lYil~~~~~~~~ 235 (410)
T PRK11021 158 AG--DIKPADIPFPAPGSIEWSGLFAALGVMFWCFVGIEAFAHLASEFKNPERDFPRALMIGLLLAGLVYWACTVVVLHF 235 (410)
T ss_pred Hc--CCchhcCCCCCCCCccHHHHHHHHHHHHHHHhcHHHHHhhHHhccCccccccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 22 2233332 3334567888999999999999999999999999999999999999999999999999999887766
Q ss_pred cccccC-CCCcHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCCCCchhhhhhcCCcccchHHHH
Q 009714 268 VPYKFL-DEDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQV 346 (528)
Q Consensus 268 ~~~~~~-~~~~p~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~~~~~n~r~~~P~~a~l 346 (528)
.|.++. ++++|..+++++..++....++.+..+++.+++.++.+.+.||++++|||||.+||+|+|+| |+|+|+++++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~G~~~~~ii~i~~~~s~~~~~~~~~~~~sR~l~a~ardg~lP~~~~k~~-~~~tP~~ail 314 (410)
T PRK11021 236 PAYGDKQAAAASLPGIFVQLFGGYALWVICVIGYLACFASVNIYTQSFARLVWSQAREGRPPSYLARLS-ARGVPVNALN 314 (410)
T ss_pred CCCcchhhccccHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccHHHHhhc-cCCCcHHHHH
Confidence 654433 34577888887776666667788888999999999999999999999999999999999999 7899999999
Q ss_pred HHHHHHHHHHHh-----hCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCcccccccchhhHHHHHHHHHhhhhc
Q 009714 347 WVGIVAGILAGL-----FNVRVLSHILSVGTLTGYSVVSACVIALRWKDRTSRNDSSRLTSAWRQGVICLIIIACCGFGA 421 (528)
Q Consensus 347 ~~~~i~~~~~~~-----~~~~~l~~~~~~~~l~~y~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 421 (528)
++.+++.+..+. .+++.+.++.+...++.|.+...+.++++++++
T Consensus 315 ~~~~i~~~~~l~~~~~~~~~~~l~~~~~~~~li~y~~~~~a~~~l~~~~~------------------------------ 364 (410)
T PRK11021 315 AVLGCCAVSILLIYALGLNLEALIAYANGIFVLIYLLCMLAACKLLKGRY------------------------------ 364 (410)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHhccch------------------------------
Confidence 988876655433 267788888888889999999999988875320
Q ss_pred chhhccchhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 009714 422 GLFYRINASYILLIVAVVIAVLASAMLCLRHGYSDPPGFSCPGVPLLPAVSIFFNLFLFAQLHYEAWWRFVILSFISIGL 501 (528)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 501 (528)
|.+|+++++.|.+++...+++.+... ....+.+
T Consensus 365 --------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 397 (410)
T PRK11021 365 --------------------------------------------RPLAVLGCLLCLLLLVMLGWKMLYAL---IMLALLW 397 (410)
T ss_pred --------------------------------------------HHHHHHHHHHHHHHHHHhhHHHHHHH---HHHHHHH
Confidence 36899999999999888887765443 2345556
Q ss_pred HHhhccccc
Q 009714 502 YAFYGQYHA 510 (528)
Q Consensus 502 y~~~~~~~~ 510 (528)
++.+++||+
T Consensus 398 ~~~~~~~~~ 406 (410)
T PRK11021 398 LFLPKRKTH 406 (410)
T ss_pred HHHHHhhhh
Confidence 665666655
No 23
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=1.7e-47 Score=397.67 Aligned_cols=472 Identities=31% Similarity=0.442 Sum_probs=352.0
Q ss_pred cccccccccCcccccCCCChHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC-CchhhhhHHHhchhHHHHHHHHHHHHHH
Q 009714 23 LLAPEYSLSPVPWLATPVQVRVTISFLLAGAASVLNALCYAELASRFPAVV-GGAYLYAYTAFNELTAFLVFAQLMLDYH 101 (528)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~G~~~~l~~~l~~l~~~~~a~~~ael~~~~P~~~-Gg~y~~~~~~~g~~~gf~~gw~~~l~~~ 101 (528)
.++....+.++..+.+.+||+.+++|+++++.+++.+++|+|++.++|+ + ||.|.|++|..||.+||.+||.|++.|+
T Consensus 45 ~IGtGl~V~sG~~l~~~gp~s~iisf~i~g~~~~~~~~~~~E~~~~~P~-~aGs~~~ya~~~i~e~~aF~~gWny~l~y~ 123 (554)
T KOG1286|consen 45 TIGTGLFVGTGSALRNGGPPSLLISFIIAGIAALLSALCLGEFAVRFPV-SAGSFYTYAYRFVGESLAFAIGWNYLLEYV 123 (554)
T ss_pred eeccceEEeccHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHheeccc-ccccceeeeeeeeCcHHHHHHHHHHHHHHH
Confidence 3344444444566788888899999999999999999999999999998 6 9999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHH
Q 009714 102 IGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLC-WGVGESSVLNSCMTVVK 180 (528)
Q Consensus 102 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ln~-~g~~~~~~~~~i~~~~~ 180 (528)
...++++.+.+.+++++.+ ........+ +..........++.++++.++.+-. .+.|....++++++.+.
T Consensus 124 i~~a~e~~a~s~~~~~w~~-~~~~~~~~~--------~~~~~~~~~~fla~~v~in~~gv~~~ge~ef~~~~~kvl~~v~ 194 (554)
T KOG1286|consen 124 IGLAAEARAWSSYLDYWTG-ASLIGILVD--------TVNPGGWIPDFLAFILIINLFGVLAYGEVEFSLAFNKILTAVG 194 (554)
T ss_pred HhhhHHHHHHHHHHHHHhc-ccccccccc--------CCCCCccHHHHHHHHHHHHHHHHhhccceeehHHHHHHHHHHH
Confidence 9999999999999999851 000000000 0000111222233333333333323 56666778888888888
Q ss_pred HHHHHHHHhhhcccccccCCC---------CCCCCChHHHHHHHHHHHHhhhhhHHHhhhhhhhcCCCCchhHHHHHHHH
Q 009714 181 VIIVIVVIFAGAFEVDVSNWS---------PFAPNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLL 251 (528)
Q Consensus 181 i~~l~~~~i~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~k~p~k~ip~ai~~s~~ 251 (528)
++.+.+.+.+|..+.|.+||. .|.|.++.+++.++..++|+|.|+|.++..+||+|||||++|+|+..++.
T Consensus 195 ~~Il~iVi~~G~~~~d~~~~ig~~y~~~~g~F~p~gf~Gv~s~~~~~~fsf~G~e~va~~a~E~kNP~k~IP~ai~~s~~ 274 (554)
T KOG1286|consen 195 FIILAIVIIAGGGPADVKNWIGFRYWHDPGAFFPFGFKGVLSGAATAFFSFIGFELVATTAEEAKNPRKAIPKAIKQSLL 274 (554)
T ss_pred HHHhheeeecCCCcCCcCCCcCccccCCCCCcCCCCcceeeHHHHHHHHHHhhHHHHHHHHHhccCCcccccHHHHHHHH
Confidence 888888888888877765654 37788899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcccccc--CCCCcHHHHHHH-HcCh---hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCC
Q 009714 252 ICAALYVGVSLVLTGMVPYKF--LDEDAPLSDAFA-SRGL---KYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDG 325 (528)
Q Consensus 252 ~~~i~y~l~~~~~~~~~~~~~--~~~~~p~~~~~~-~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg 325 (528)
.+.++|++..+.+...+|+++ ++++++....+. ..+. +....++++++++++.+++|+.+++.||.+++||+||
T Consensus 275 ri~~~Yi~~~~~l~l~vpy~~~~L~~~~~~~spF~iai~~~~~k~~~~ivna~iL~~~~s~~n~~~y~~sR~l~amA~~G 354 (554)
T KOG1286|consen 275 RILLFYILSSIVLGLLVPYNDPRLDPGAALASPFVIAIGNAGAKYLPHIVNAGILIGLLSSLNSSLYAGSRVLYALAKDG 354 (554)
T ss_pred HHHHHHHHHHHHheEEeccCccccCCCCccccHHHHHHhccCccccchhhhHHHHHHHHHHHHHHhHHhHHHHHHHHhcC
Confidence 999999999999999999987 887776666555 4444 4445599999999999999999999999999999999
Q ss_pred CCchhhhhhcCCcccchHHHHHHHHHHHHHHHhhCH------HHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCC-----
Q 009714 326 LLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLFNV------RVLSHILSVGTLTGYSVVSACVIALRWKDRTSR----- 394 (528)
Q Consensus 326 ~lP~~~~~~n~r~~~P~~a~l~~~~i~~~~~~~~~~------~~l~~~~~~~~l~~y~~~~~~~~~~r~~~~~~~----- 394 (528)
++||+|+++|+| |+|++|+++..+++.+..+..+. +++.++.++++++.|..++++++++|+..++..
T Consensus 355 ~~Pk~f~~v~~~-g~P~~a~~v~~~~~~l~~~~~~~~~~~~f~~L~~~~si~tl~~w~~i~~~~i~~R~a~~~q~~~~~~ 433 (554)
T KOG1286|consen 355 LAPKFFARVDRR-GVPLVAVLVSGLFGALAALNFSLGAATVFNWLVNLSSIGTLFAWTLVALSHLRFRYAMKVQGRSLDE 433 (554)
T ss_pred CcchHHhhcCCC-CCchhHHHHHHHHHHHHHHHhccccchHHHHHHHHHhHHHHHHHHHHHHHHeeeeecccccCCCccc
Confidence 999999999955 99999999999999988888766 999999999999999999999999998653322
Q ss_pred CCcccccccchhhHHHHHHHHHh---hhhcchhhc--cchhHHHHH-HHHHHHHHHHHHHHhhcCCCCCCCCCCCccchh
Q 009714 395 NDSSRLTSAWRQGVICLIIIACC---GFGAGLFYR--INASYILLI-VAVVIAVLASAMLCLRHGYSDPPGFSCPGVPLL 468 (528)
Q Consensus 395 ~~~~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~--~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~p~~ 468 (528)
.+.+.....++..+.....+... .+....... .+....+.. +...+.+.....++..+|. +.. ..|+.
T Consensus 434 ~~~~s~~~~~gs~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~yl~~~i~l~~~i~~~i~~~~---~~~---~vp~~ 507 (554)
T KOG1286|consen 434 LPYKSPTGPYGSYYGLLVNILILLAQFYVAFFPIGSEFSAWGFFEAYLGLPILLIFYIGYKIYAKP---TNT---LVPLS 507 (554)
T ss_pred ccccCCCCCchhHHHHHHHHHHHHHHHhccccccCCCCcHHHHHHHHHHHHHHHHHHHHHheeecc---ccc---ccCCc
Confidence 12222223344333333322222 222222222 222222111 1111122222222211111 111 55677
Q ss_pred HHHHHHHHHHHHhcCCHHHHH--HHHHHHHHHHHHHHh-hcccccC
Q 009714 469 PAVSIFFNLFLFAQLHYEAWW--RFVILSFISIGLYAF-YGQYHAD 511 (528)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~y~~-~~~~~~~ 511 (528)
|.+.+..+.+++..++.++|. ....|...++..|.. |+.+|++
T Consensus 508 ~~idl~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~ 553 (554)
T KOG1286|consen 508 PCIDLDTNIYLMDSLDAETWIEERFEVWLEIGLLIYFFWYGIRHSK 553 (554)
T ss_pred cceEEEecceeeccccchhhhhhhHHHHhhhhhHHHHHhhhhhccc
Confidence 788888888888888888999 999999999999987 7888764
No 24
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=100.00 E-value=3.6e-46 Score=395.08 Aligned_cols=384 Identities=24% Similarity=0.310 Sum_probs=301.0
Q ss_pred ccCCCCh-H-HHHHHHHHHHHHHHHHHHHHHHhccCCCCCCchhhhhHHHhchhHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 009714 36 LATPVQV-R-VTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLD-YHIGAASIARSLA 112 (528)
Q Consensus 36 ~~~~~G~-~-~~l~~~l~~l~~~~~a~~~ael~~~~P~~~Gg~y~~~~~~~g~~~gf~~gw~~~l~-~~~~~a~~~~~~~ 112 (528)
..+.+|+ + .+++|+++++++++.+++++|+++++|+ +||.|+|++|.+||.+||+++|..++. +....+..+..++
T Consensus 69 ~~~~~G~~g~~~~~~ii~~i~~~~~al~~aELas~~P~-sGG~y~~~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~ 147 (501)
T TIGR00911 69 VLKNAGSVGLALIMWAVCGIFSIVGALVYAELGTTIPK-SGGEYNYILEVFGPLLAFLRLWIELLVIRPGSQAVNALNFA 147 (501)
T ss_pred HHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CCchhhhHHhHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555676 3 4689999999999999999999999998 999999999999999999999987763 3344556666666
Q ss_pred HHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 009714 113 SYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGA 192 (528)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ln~~g~~~~~~~~~i~~~~~i~~l~~~~i~~~ 192 (528)
.|+... ..+. ...+. ....+++++++++.+.+|++|+|..+++|++.+.+++++++++++.++
T Consensus 148 ~y~~~~--~~~~--~~~~~-------------~~~~~i~~~~i~~~~~ln~~Gvk~~~~~~~i~~~~~l~~l~~~ii~~~ 210 (501)
T TIGR00911 148 IYILTP--VFPD--CEVPE-------------WAIRLVAVLCVLLLTLVNCLSVKWATRVQDIFTACKLLALLLIIITGW 210 (501)
T ss_pred HHHHHH--hcCC--CCCch-------------HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665331 1121 11111 223457788888999999999999999999999999998888777665
Q ss_pred cccc---ccCC--CC-CC--CCChHHHHHHHHHHHHhhhhhHHHhhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 009714 193 FEVD---VSNW--SP-FA--PNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVL 264 (528)
Q Consensus 193 ~~~~---~~~~--~~-~~--~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~k~p~k~ip~ai~~s~~~~~i~y~l~~~~~ 264 (528)
...+ .++. +. +. +++..++..++..++|+|.|+|.+++++||+|||+||+||++..+..+++++|++..++.
T Consensus 211 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~~a~~~~~~af~G~e~~~~~a~E~knP~r~iPrAi~~s~~~v~~~Y~l~~~a~ 290 (501)
T TIGR00911 211 VQLGKGGVESLNPKNAFEGTETSAGGIVLAFYSGIWAYGGWNYLNFVTEEVKNPYRTLPIAIIISMPIVTFIYVLTNIAY 290 (501)
T ss_pred HHhcCCCccccCcccccCCCCCcHHHHHHHHHHHHHHHHhHHHHhhhHHHhcCchhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4321 1111 11 11 134567888999999999999999999999999999999999999999999999999999
Q ss_pred HhccccccCCCCcHHHHHH-HHcChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCCCCchhhhhhcCCcccchH
Q 009714 265 TGMVPYKFLDEDAPLSDAF-ASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVH 343 (528)
Q Consensus 265 ~~~~~~~~~~~~~p~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~~~~~n~r~~~P~~ 343 (528)
....|.+++..+.+....+ +...+ ....++.+...++.+++.++.+.+.||++++|||||.+|++++|+|+|+++|++
T Consensus 291 ~~~~~~~~l~~~~~~~~~~~~~~~g-~~~~~i~~~~~is~~~~~~~~~~~~sR~l~a~ardg~lP~~~~~v~~~~~~P~~ 369 (501)
T TIGR00911 291 FTVLSPEELLASLAVAVDFGERLLG-VMSWAMPALVGLSCFGSVNGSLFSSSRLFFVGGREGHLPSLLSMIHVKRLTPLP 369 (501)
T ss_pred HhcCCHHHHhcChHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHhcCCCCCCHH
Confidence 8888888776544443333 33333 456677788888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCcccccccchhhHHHHHHHHHhhhhcch
Q 009714 344 SQVWVGIVAGILAGLFNVRVLSHILSVGTLTGYSVVSACVIALRWKDRTSRNDSSRLTSAWRQGVICLIIIACCGFGAGL 423 (528)
Q Consensus 344 a~l~~~~i~~~~~~~~~~~~l~~~~~~~~l~~y~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 423 (528)
++++..+++.+.....+...+.++.+....+.|.+...+.+++|+|+|+.
T Consensus 370 all~~~~i~~l~~~~~~~~~l~~~~~~~~~i~y~l~~~a~i~lR~~~p~~------------------------------ 419 (501)
T TIGR00911 370 SLLIVCTLTLLMLFSGDIYSLINLISFANWLFNALAVAGLLWLRYKRPEM------------------------------ 419 (501)
T ss_pred HHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHheeccCCCC------------------------------
Confidence 99999888777666667777778888888899999999999999988775
Q ss_pred hhccchhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCccchhHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHHHH
Q 009714 424 FYRINASYILLIVAVVIAVLASAMLCLRHGYSDPPGFSCPGVPLLPAVSIFFNLFLFAQ---LHYEAWWRFVILSFISIG 500 (528)
Q Consensus 424 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~ 500 (528)
+|+||.|. +.|.++++.+++++.. .++........++++|+.
T Consensus 420 ---------------------------------~rp~r~p~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 464 (501)
T TIGR00911 420 ---------------------------------NRPIKVPL--FFPVFFLLSCLFLIILSLYSPPVGCGVGFIIMLTGVP 464 (501)
T ss_pred ---------------------------------CCCccCch--HHHHHHHHHHHHHhhhhhccCchhhHHHHHHHHHHHH
Confidence 56678876 4666666666665432 244444455667788888
Q ss_pred HHH
Q 009714 501 LYA 503 (528)
Q Consensus 501 ~y~ 503 (528)
+|+
T Consensus 465 ~y~ 467 (501)
T TIGR00911 465 VYF 467 (501)
T ss_pred HHH
Confidence 887
No 25
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=1.7e-46 Score=375.10 Aligned_cols=391 Identities=24% Similarity=0.373 Sum_probs=328.5
Q ss_pred cccCCCCh--HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCchhhhhHHHhchhHHHHHHHHHHHHHHHH-HHHHHHHH
Q 009714 35 WLATPVQV--RVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIG-AASIARSL 111 (528)
Q Consensus 35 ~~~~~~G~--~~~l~~~l~~l~~~~~a~~~ael~~~~P~~~Gg~y~~~~~~~g~~~gf~~gw~~~l~~~~~-~a~~~~~~ 111 (528)
.+-+.+|+ .++..|+++++++++-++||+|+++.+|+ +||+|.|.++++||.+||...|.-++..... .+..+..+
T Consensus 38 ~Vl~~~gsvg~sL~iWv~~gi~s~~galcyaELGT~ipk-sGgd~ayi~~afg~~~aF~~~wvs~l~~~p~~~Ai~altF 116 (479)
T KOG1287|consen 38 GVLANTGSVGLSLIIWVFCGIISIIGALCYAELGTSIPK-SGGDYAYISEAFGPFPAFLFLWVSLLIIVPTSAAIIALTF 116 (479)
T ss_pred HHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHhccccC-CCcchhhHHHHhccchhHHHHHHHHHHHhhhHHHHHHHHH
Confidence 34455665 78899999999999999999999999998 9999999999999999999999877765544 58889999
Q ss_pred HHH-HHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 009714 112 ASY-VVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFA 190 (528)
Q Consensus 112 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ln~~g~~~~~~~~~i~~~~~i~~l~~~~i~ 190 (528)
++| ++..+ | .... ......+++.+.+++.+.+|+.++|...++|++++..|++.+.++++.
T Consensus 117 ~~Y~l~p~f---p--~c~~-------------p~~~~~lla~~~l~~lt~~n~~~V~~a~~vq~~ft~~Kl~al~lIii~ 178 (479)
T KOG1287|consen 117 ATYLLKPFF---P--LCDV-------------PRVASKLLAAALLVLLTLINSFSVKWATRVQIVFTIAKLLALLLIIIT 178 (479)
T ss_pred HHHhhcccC---C--CCCC-------------chHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 998 43322 2 0111 244566799999999999999999999999999999999999999999
Q ss_pred hcccc---cccCCCCC-C---CCChHHHHHHHHHHHHhhhhhHHHhhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHHH
Q 009714 191 GAFEV---DVSNWSPF-A---PNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLV 263 (528)
Q Consensus 191 ~~~~~---~~~~~~~~-~---~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~k~p~k~ip~ai~~s~~~~~i~y~l~~~~ 263 (528)
|+... +.+|+... + ..+...+..++....|+|.|||.....+||+|||+||+|||+..++.+++++|++.+++
T Consensus 179 G~~~~~~g~~~~~~~~~f~g~~~~~g~i~lafysglfa~~GWd~lN~vteEiknP~ktLP~Ai~isi~lvt~iYil~NvA 258 (479)
T KOG1287|consen 179 GLYLLFWGSTQNFENSEFEGSDTDVGNIALAFYSGLFAFSGWDYLNYVTEEIKNPRRTLPRAILISIPLVTVIYVLVNVA 258 (479)
T ss_pred chheeEecccccccccccccCcCchHHHHHHHHHhhhcccCchhhccchHhhcCccccchHHHHHhhHHHHHHHHHhHhh
Confidence 87642 23332211 1 12345688899999999999999999999999999999999999999999999999999
Q ss_pred HHhccccccCCCCcHHHHHHHHc-ChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCCCCchhhhhhcCCcccch
Q 009714 264 LTGMVPYKFLDEDAPLSDAFASR-GLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPV 342 (528)
Q Consensus 264 ~~~~~~~~~~~~~~p~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~~~~~n~r~~~P~ 342 (528)
...++++|++..++.++.-+.+. .+.+. +.+.+.+.++++++.|+.+++.||+++++||+|++|+.+++.|+|+.+|.
T Consensus 259 y~~vls~~e~l~S~aVav~Fa~~~~G~~~-~~ip~~ValS~~G~~n~~ifs~SR~~~~~areG~LP~~~s~i~~~~~TP~ 337 (479)
T KOG1287|consen 259 YFTVLSPDEILSSDAVAVTFADRILGVFA-WAIPFSVALSLIGSLNSVIFSSSRLFYAGAREGHLPAFFSMISVRRFTPR 337 (479)
T ss_pred eeEecCHHHhcccchHHHHHHHHhccchH-HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHccCccHHHHhhcCCCCCCh
Confidence 99999998886666665555554 55544 99999999999999999999999999999999999999999998888999
Q ss_pred HHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCcccccccchhhHHHHHHHHHhhhhcc
Q 009714 343 HSQVWVGIVAGILAGLFNVRVLSHILSVGTLTGYSVVSACVIALRWKDRTSRNDSSRLTSAWRQGVICLIIIACCGFGAG 422 (528)
Q Consensus 343 ~a~l~~~~i~~~~~~~~~~~~l~~~~~~~~l~~y~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 422 (528)
.++++....+++..+..+++.+++..++...+.+.+..++++++|+|||+.
T Consensus 338 ~allf~~~~~i~~~~~~d~~~LIny~sf~~~l~~~l~~~gll~lR~k~p~~----------------------------- 388 (479)
T KOG1287|consen 338 PALLFSGLLSIVLSLIGDFDQLINYVSFAYWLFRGLSMAGLLWLRWKHPPL----------------------------- 388 (479)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC-----------------------------
Confidence 999999999999888889999999999999999999999999999999986
Q ss_pred hhhccchhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCccchhHHHHHHHHHHHHhc---CC-HHHHHHHHHHHHHH
Q 009714 423 LFYRINASYILLIVAVVIAVLASAMLCLRHGYSDPPGFSCPGVPLLPAVSIFFNLFLFAQ---LH-YEAWWRFVILSFIS 498 (528)
Q Consensus 423 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~g 498 (528)
+||+|+|. ..|.+.++.++++... .+ +....+..+.++.|
T Consensus 389 ----------------------------------~rPiKvpl--~~p~~~~~~~i~lvvip~~~~~~~~~~ig~~i~l~G 432 (479)
T KOG1287|consen 389 ----------------------------------PRPIKVPL--FIPILFLLICIFLVVIPIISDFPVETLIGIGIILSG 432 (479)
T ss_pred ----------------------------------CCCEeeee--ehHHHHHHHHHHHhheeeeecCCccchhHHHHHHHh
Confidence 78899998 6777777777776553 22 22245666778899
Q ss_pred HHHHHhhccccc
Q 009714 499 IGLYAFYGQYHA 510 (528)
Q Consensus 499 ~~~y~~~~~~~~ 510 (528)
+.+|+.+.++++
T Consensus 433 ~~~Y~~~i~~~~ 444 (479)
T KOG1287|consen 433 VPFYFLFIHWKK 444 (479)
T ss_pred hhhheEEEEecC
Confidence 999987765554
No 26
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=100.00 E-value=5.6e-45 Score=382.50 Aligned_cols=388 Identities=19% Similarity=0.276 Sum_probs=312.4
Q ss_pred ccccCCCCh-HHHHHHHHHHHHHHHHHHHHHHHhccCCCCC-CchhhhhHHHhchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 009714 34 PWLATPVQV-RVTISFLLAGAASVLNALCYAELASRFPAVV-GGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSL 111 (528)
Q Consensus 34 ~~~~~~~G~-~~~l~~~l~~l~~~~~a~~~ael~~~~P~~~-Gg~y~~~~~~~g~~~gf~~gw~~~l~~~~~~a~~~~~~ 111 (528)
+.+++.+|| ..+++|+++++.+++.+++++|+++++|+ + ||.|+|++|.+||..||.+||.+|+++....+..+...
T Consensus 26 ~~~~~~ag~~~~l~~w~i~~~~~~~~al~~aeL~s~~P~-~gGG~y~y~~~~fG~~~gf~~gw~~w~~~~~~~~~~~~~~ 104 (468)
T TIGR03810 26 SDMAAGAAAGAVLIGWVITGVGMLALAFSFQNLANKKPE-LDGGVYSYAKAGFGPFMGFISAWGYWLSAWLGNVAYATLL 104 (468)
T ss_pred HHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC-CCCChhhhHHhHcCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667788 58899999999999999999999999998 6 59999999999999999999999999887766666666
Q ss_pred HHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 009714 112 ASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAG 191 (528)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ln~~g~~~~~~~~~i~~~~~i~~l~~~~i~~ 191 (528)
..++..++ |..... .+....+++.++++++..+|++|+|..+++|++.+.+|+++++++++.+
T Consensus 105 ~~~~~~~~---p~~~~~--------------~~~~~~~~~~~~~~~~~~ln~~Gv~~~~~i~~i~~~~ki~~l~~~ii~~ 167 (468)
T TIGR03810 105 FSTLGYFF---PIFGGG--------------NNPPSIIGASVLLWCVHFLVLRGVEGAAFINTITTIAKLVPLFVFIVIG 167 (468)
T ss_pred HHHHHHhc---ccccCC--------------CcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66655443 211110 0112234566777788999999999999999999999999988888776
Q ss_pred cccccccCCCC-----C-----CCCChHHHHHHHHHHHHhhhhhHHHhhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHH
Q 009714 192 AFEVDVSNWSP-----F-----APNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVS 261 (528)
Q Consensus 192 ~~~~~~~~~~~-----~-----~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~k~p~k~ip~ai~~s~~~~~i~y~l~~ 261 (528)
....+.+++++ . ..+.+.++..++...+|+|.|+|.+++++||.|| +||+||++..+...+.++|++.+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~e~k~-~k~ip~ai~~~~~~v~~lY~l~~ 246 (468)
T TIGR03810 168 IFAFKGDTFTNDFWGNANGGFSLGSVMTQVKNMMLVTVWVFIGIEGASMLSARAEK-RSDVGKATVIGLIGVLAIYVLVS 246 (468)
T ss_pred HHHhcHhhcCccccccccccCccccHHHHHHHHHHHHHHHHHhHhHHhhhHhhccC-cccchHHHHHHHHHHHHHHHHHH
Confidence 54433222211 0 1122456777888999999999999999999999 79999999999999999999999
Q ss_pred HHHHhccccccCC-CCcH-HHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCCCCchhhhhhcCCcc
Q 009714 262 LVLTGMVPYKFLD-EDAP-LSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRH 339 (528)
Q Consensus 262 ~~~~~~~~~~~~~-~~~p-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~~~~~n~r~~ 339 (528)
....+..|+++++ .++| ..++++...+++...++.+..+++.+++.++++.+.||++++|||||.+||+|+|+| |+|
T Consensus 247 ~~~~g~~~~~~l~~~~~p~~~~~~~~~~g~~~~~~i~~~~~is~~~~~~~~~~~~sR~~~a~ardg~lP~~f~k~~-~~~ 325 (468)
T TIGR03810 247 VLSYGIMTQAQLAGLKNPSMAYVLEHMVGTWGAVLINIGLIISILGAWLSWTLLPAEIPLLMAKDKLMPKYFGKEN-ANG 325 (468)
T ss_pred HHHHhCcCHHHHhcCCCchHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHhhC-CCC
Confidence 9999988887764 3455 677888888888899999999999999999999999999999999999999999999 789
Q ss_pred cchHHHHHHHHHHHHHHHhh-----CHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCcccccccchhhHHHHHHH
Q 009714 340 TPVHSQVWVGIVAGILAGLF-----NVRVLSHILSVGTLTGYSVVSACVIALRWKDRTSRNDSSRLTSAWRQGVICLIII 414 (528)
Q Consensus 340 ~P~~a~l~~~~i~~~~~~~~-----~~~~l~~~~~~~~l~~y~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~~~~~~ 414 (528)
+|+++++++.+++.++.+.. .++.+.++.+...++.|.+++++.+++|+|+++..
T Consensus 326 tP~~al~~~~~i~~~~~l~~~~~~~~~~~l~~~~~~~~li~y~~~~~~~~~l~~~~~~~~-------------------- 385 (468)
T TIGR03810 326 APTNALWLTNGLIQIFLLTTLFSEQAYNFAISLATSAILVPYLWSAAYQVKLSWRGGQER-------------------- 385 (468)
T ss_pred CCHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc--------------------
Confidence 99999999888876554431 35778888888889999999999999987653210
Q ss_pred HHhhhhcchhhccchhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCccchhHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009714 415 ACCGFGAGLFYRINASYILLIVAVVIAVLASAMLCLRHGYSDPPGFSCPGVPLLPAVSIFFNLFLFAQLHYEAWWRFVIL 494 (528)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (528)
+++.+ ++++.++.+.+++.....+++......+.
T Consensus 386 ------------------------------------------~~~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 419 (468)
T TIGR03810 386 ------------------------------------------GRRKQ----LLIGLVALLYAVWLIYAAGLKYLLLSAIL 419 (468)
T ss_pred ------------------------------------------chhhh----HHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 11111 46788888888888888888888888888
Q ss_pred HHHHHHHHHhhcc
Q 009714 495 SFISIGLYAFYGQ 507 (528)
Q Consensus 495 ~~~g~~~y~~~~~ 507 (528)
.++|+.+|+..++
T Consensus 420 ~~~g~~~y~~~~~ 432 (468)
T TIGR03810 420 YAPGIYFYARARK 432 (468)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999875333
No 27
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=100.00 E-value=4.2e-44 Score=377.90 Aligned_cols=358 Identities=18% Similarity=0.227 Sum_probs=269.8
Q ss_pred cccccccccccccccC-cccccCCCCh-HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCchhhhhHHHhc----hhHHH
Q 009714 17 SSASARLLAPEYSLSP-VPWLATPVQV-RVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFN----ELTAF 90 (528)
Q Consensus 17 ~~~~~~~~~~~~~~~~-~~~~~~~~G~-~~~l~~~l~~l~~~~~a~~~ael~~~~P~~~Gg~y~~~~~~~g----~~~gf 90 (528)
-..+.+.+++..++.. .+.....+|| +++++|++++++.++.+++++||++++|+ +||.|+|++|.+| +..||
T Consensus 20 ~~~~~~~~~~~~g~~~~~~~~~~~~Gp~~~i~~~~i~gi~~l~~~~~~aEl~s~~P~-~Gg~y~~~~~~~g~~~g~~~~f 98 (482)
T TIGR00907 20 FGFAFSISNSWTGISTTYNYGLSSGGAMSIVWGWIIAGAGSICIALSLAELSSAYPT-SGGQYFWSAKLAPPRQMPFASW 98 (482)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCccchhHHHHHHHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHhcccccccceeH
Confidence 3444454544333322 2333456788 78999999999999999999999999999 9999999999987 57799
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhhhhHHH
Q 009714 91 LVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESS 170 (528)
Q Consensus 91 ~~gw~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ln~~g~~~~~ 170 (528)
++||.+++++....++.+...++++......... .+.+. .+.....++..+++++.+.+|++|+|..+
T Consensus 99 ~~gW~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~~~~--------~~~~~~~~i~~~~~~~~~~in~~g~k~~~ 166 (482)
T TIGR00907 99 MTGWFNLAGQVAGTASTDLSVAQLILGIVSLTTP----GREYI--------PTRWHIFGIMIGIHLIHALINSLPTKWLP 166 (482)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----CCCcc--------ccCchhhhhHHHHHHHHHHHHHhhHhHHH
Confidence 9999999999999998888888888765532110 00011 11122234677788889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccc----c-----cCCC----CCCCCChHHHHHHHHHHHHhhhhhHHHhhhhhhhcC
Q 009714 171 VLNSCMTVVKVIIVIVVIFAGAFEVD----V-----SNWS----PFAPNGFKEILTGATVVFFAYVGFDAVANSAEESKK 237 (528)
Q Consensus 171 ~~~~i~~~~~i~~l~~~~i~~~~~~~----~-----~~~~----~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~k~ 237 (528)
+++++..+++++.++++++......+ . +++. ++.|+++ +++.++....|+|.|+|.+++++||+||
T Consensus 167 ~~~~~~~~~~i~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~g~-~~~~~~~~~~fsf~G~e~~~~~a~E~kn 245 (482)
T TIGR00907 167 RITSSAAYWSLLGFLTICITLLACKSPKFNDGKFVFTNFNNSTGGWKPGGF-AFLLGLLNPAWSMTGYDGTAHMAEEIEN 245 (482)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhhhheeeeCCCCCcCCCch-hhhhhhhhhHHHhcCcchhhHHHHhcCC
Confidence 99999998888777755444332111 1 1111 2233444 5677777889999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHhccc-cccC-CC--CcHHHHHHHHc-ChhHHHHHHHHHHHHHHHHHHHHHHH
Q 009714 238 PQRDLPIGILGSLLICAALYVGVSLVLTGMVP-YKFL-DE--DAPLSDAFASR-GLKYVSVLISFGAVAGLTTTLLVGLY 312 (528)
Q Consensus 238 p~k~ip~ai~~s~~~~~i~y~l~~~~~~~~~~-~~~~-~~--~~p~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~ 312 (528)
|+||+|||+..++.+..+++.+..+......+ .+++ ++ ++|+.+.+... +.++...++....+++.+++.++.++
T Consensus 246 P~r~iP~Ai~~s~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (482)
T TIGR00907 246 PEVVGPRAIIGAVAIGIVTGFCFNIVLFFSMGDIDSLISSTTGQPIAQIFYNALGNKAGAIFLLCLILVTSFFCAITCMT 325 (482)
T ss_pred hhhhcCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHhcCCCCChHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998877665544444433332 2222 22 35898888775 44467777888888999999999999
Q ss_pred hHHHHHHHhhcCCCCc--hhhhhhcCCcccchHHHHHHHHHHHHHHHhh-----CHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009714 313 VQSRLYLGLGRDGLLP--SIFAKVHPKRHTPVHSQVWVGIVAGILAGLF-----NVRVLSHILSVGTLTGYSVVSACVIA 385 (528)
Q Consensus 313 ~~sR~l~a~a~dg~lP--~~~~~~n~r~~~P~~a~l~~~~i~~~~~~~~-----~~~~l~~~~~~~~l~~y~~~~~~~~~ 385 (528)
+.||++++|||||.+| ++|+|+|||+|+|++|++++.+++.++.+.. .++.+.++.+...++.|.++..+.++
T Consensus 326 ~~sR~l~a~ardg~lP~~~~f~~v~~~~~~P~~ai~~~~~i~~~~~~~~~~~~~~f~~l~~~~~~~~~i~y~~~~~~~l~ 405 (482)
T TIGR00907 326 ANSRMIYAFSRDGGLPFSPLWSRVNPRTQVPLNAVWLSAVWIILIGLLGLGSSTAFQAIFSVCTVALDVSYVIPIICKLA 405 (482)
T ss_pred HHHHHHHHHHhcCCcCchHhhceeCCCCCCcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999 9999999888999999999998887765543 45777888888889999998887765
Q ss_pred hhh
Q 009714 386 LRW 388 (528)
Q Consensus 386 ~r~ 388 (528)
+|+
T Consensus 406 ~~~ 408 (482)
T TIGR00907 406 KGR 408 (482)
T ss_pred hcC
Confidence 443
No 28
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=100.00 E-value=7.3e-44 Score=374.75 Aligned_cols=387 Identities=20% Similarity=0.222 Sum_probs=279.3
Q ss_pred cccccccccccccccC-cccccCCCChHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCchhhhhHHHhchhHHHHHHHH
Q 009714 17 SSASARLLAPEYSLSP-VPWLATPVQVRVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQ 95 (528)
Q Consensus 17 ~~~~~~~~~~~~~~~~-~~~~~~~~G~~~~l~~~l~~l~~~~~a~~~ael~~~~P~~~Gg~y~~~~~~~g~~~gf~~gw~ 95 (528)
-..+.+.+++..++.. .+...+.+||+.+++|+++++..++.+++++||++++|+ +||.|+|++|.+||.+||++||.
T Consensus 21 ~~~~~~~~~~~~gi~~~~~~~~~~~Gp~~~~~~li~~i~~l~~als~aEL~s~~P~-aGG~Y~~~~~~~g~~~gf~~gW~ 99 (475)
T TIGR03428 21 FAAGFSFVSILTTIFQLFGFGYGFGGPAFFWTWPVVFVGQLLVALNFAELAARYPI-SGAIYQWSRRMGGEVIGWFAGWF 99 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHhhCCC-CCCHHHHHHHHcCccccHHHHHH
Confidence 3444455544444333 455677899999999999999999999999999999999 99999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 009714 96 LMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSC 175 (528)
Q Consensus 96 ~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ln~~g~~~~~~~~~i 175 (528)
+++++....+..+.....++..+......... .+++.. ..+.....+++.+++++.+.+|++|+|..+++|++
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~------~~~~~~~~~~~~~~~~~~~~in~~g~k~~~~i~~~ 172 (475)
T TIGR03428 100 MIIAQIVTAAAAAIALQVVLPNIWSGFQIIGE-DPTLTS------PSGAANAVLLGSVLLVLTTVINCIGVEWMSRVNTI 172 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhccc-CccccC------CCchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 99999877766666655554433211110000 011100 00112344677778888999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhccccccc-------CCCCCCCCChHHHHHHHHHHHHhhhhhHHHhhhhhhhcCCCCchhHHHHH
Q 009714 176 MTVVKVIIVIVVIFAGAFEVDVS-------NWSPFAPNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIGILG 248 (528)
Q Consensus 176 ~~~~~i~~l~~~~i~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~k~p~k~ip~ai~~ 248 (528)
...++++.++++++.+..+.+.+ ++++..+.....++.+....+|+|.|+|.+++++||+|||+||+||++..
T Consensus 173 ~~~~~i~~l~~iii~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~aeE~knP~r~iPrai~~ 252 (475)
T TIGR03428 173 GVTCEIVGVLAVIGVLFTHAQRGPGVVFDTSVTGASPGYYGAFLVSGLMAAYVMVGFGSAGELSEETKNPRRVAPRTILT 252 (475)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcceeeecCCCCCCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhcCcchhhhHHHHH
Confidence 99999887777766554432211 11111222234577788889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccccc--cCCCCcHHHHHHHHc-ChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCC
Q 009714 249 SLLICAALYVGVSLVLTGMVPYK--FLDEDAPLSDAFASR-GLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDG 325 (528)
Q Consensus 249 s~~~~~i~y~l~~~~~~~~~~~~--~~~~~~p~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg 325 (528)
++.++.++|.+..+......|+. ...++++...++.+. +.++.. .+....+++.+++.++.+.+.||+++++||||
T Consensus 253 s~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~-~~~~~~~i~~~~~~~~~~~~~sR~~~a~Ardg 331 (475)
T TIGR03428 253 ALSVSALGGGLMILGALMAAPSLTDGRLAAEGLPYVLSAVLDSPWGT-VLLVDVAIAILVCTLAIQTAGSRLMFSMARDG 331 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHhhcCCCchHHHHHHHhCcHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999888777777766655431 111222233444444 334433 44455677889999999999999999999999
Q ss_pred CCc--hhhhhhcCCcccchHHHHHHHHHHHHHHHhh-----CHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC--C--CCC
Q 009714 326 LLP--SIFAKVHPKRHTPVHSQVWVGIVAGILAGLF-----NVRVLSHILSVGTLTGYSVVSACVIALRWKD--R--TSR 394 (528)
Q Consensus 326 ~lP--~~~~~~n~r~~~P~~a~l~~~~i~~~~~~~~-----~~~~l~~~~~~~~l~~y~~~~~~~~~~r~~~--~--~~~ 394 (528)
.+| ++++|+|||+++|++|+++..+++.++.+.. .++.+.++.+....++|.++.+..+..|+|+ + ++.
T Consensus 332 ~lP~s~~~~~v~~r~~tP~~A~~l~~~i~~~~~~i~~~~~~af~~l~s~~~~~~~~~Y~~~~~~~l~~~~~~~~~~~~~~ 411 (475)
T TIGR03428 332 KLPASAQLSRVHPRTGTPILPSIVIGVLCIGILLINVGNSALFATLASVCIVLIYLAYLLVTVPLLLRRLRGWPRGDQTD 411 (475)
T ss_pred CCcchHHhcccCCCCCCcHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccCCC
Confidence 999 4899999999999999999998887766653 2456777777777899999888877776543 1 223
Q ss_pred CCcccccccchhhHHHHH
Q 009714 395 NDSSRLTSAWRQGVICLI 412 (528)
Q Consensus 395 ~~~~~~~~~~~~~i~~~~ 412 (528)
++-+++.++++..+....
T Consensus 412 ~~g~f~lg~~g~~vn~~a 429 (475)
T TIGR03428 412 PAGLFSLGRWGLPVNILA 429 (475)
T ss_pred CCCCCCCchhHHHHHHHH
Confidence 445566677765554433
No 29
>TIGR00930 2a30 K-Cl cotransporter.
Probab=100.00 E-value=3.2e-43 Score=388.81 Aligned_cols=398 Identities=17% Similarity=0.227 Sum_probs=317.1
Q ss_pred ccccCCCCh-HHHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCCchhhhhHHHhchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 009714 34 PWLATPVQV-RVTISFLLAGAASVLNALCYAELASR-FPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSL 111 (528)
Q Consensus 34 ~~~~~~~G~-~~~l~~~l~~l~~~~~a~~~ael~~~-~P~~~Gg~y~~~~~~~g~~~gf~~gw~~~l~~~~~~a~~~~~~ 111 (528)
+++++.+|. .+++.|+++++++++++++|+|++++ .|+ +||.|.|++|++||..|+.+||.+++++..+.+.++.++
T Consensus 102 ~~Vvg~aG~~~sll~~~la~~vtlltaLS~seiaTng~p~-aGG~Y~yisralGp~~Gf~iG~~~~la~~va~A~~~~Gf 180 (953)
T TIGR00930 102 SWIVGQAGIGLSLLIILLCCCVTTITGLSMSAIATNGVVK-GGGAYYLISRSLGPEFGGSIGLIFAFANAVAVAMYVVGF 180 (953)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-ccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888897 58999999999999999999999998 998 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 009714 112 ASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAG 191 (528)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ln~~g~~~~~~~~~i~~~~~i~~l~~~~i~~ 191 (528)
++|+..++..... ....+ ......+++.+++++++++|+.|+|..+++|.++++++++.++.+++.+
T Consensus 181 ~eyl~~lf~~~~~-~~~~~------------~~~~~~iia~i~l~ll~~In~~Gvk~~ak~q~vl~vi~ll~ll~~iig~ 247 (953)
T TIGR00930 181 AETVLDLLRENGS-KIMVD------------PINDIRIYGTVTVVVLLGISFAGMEWENKAQVLFLVIVLLSILNIFVGT 247 (953)
T ss_pred HHHHHHHhhhccc-ccccC------------ccccchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhee
Confidence 9999887642110 00000 0011346888999999999999999999999999999998888877765
Q ss_pred ccccc-----------c----cCCCCCCCCChHHHHHHHHHHHHhhhhhHHHhhhhhhhcCCCCchhHHHHHHHHHHHHH
Q 009714 192 AFEVD-----------V----SNWSPFAPNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAAL 256 (528)
Q Consensus 192 ~~~~~-----------~----~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~k~p~k~ip~ai~~s~~~~~i~ 256 (528)
+.... . .|+.+-.+++..++...+...+++|+|+|+.++++||+|||+|++|||++.++++++++
T Consensus 248 ~~~~~~~~~~g~~~~~~~~f~~n~~p~~~~~~~~f~~~~ai~F~A~tGi~agan~sgElKnP~r~IPratl~ai~i~~vl 327 (953)
T TIGR00930 248 IIPAFDKPAKGFFGLGNEIFSENFIPGIPGPEGGFFSLFGIFFPSVTGILAGANISGDLKDPQKAIPKGTLLAILTTTVV 327 (953)
T ss_pred eecCCCCCccceeeccchhhhhccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhccChhhhhHHHHHHHHHHHHHH
Confidence 43211 0 11112222333347777777888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccccccCCC-Cc------------------HHHHH----HHH-cChhHHHHHHHHHHHHHHHHHHHHHHH
Q 009714 257 YVGVSLVLTGMVPYKFLDE-DA------------------PLSDA----FAS-RGLKYVSVLISFGAVAGLTTTLLVGLY 312 (528)
Q Consensus 257 y~l~~~~~~~~~~~~~~~~-~~------------------p~~~~----~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~ 312 (528)
|++.++......+.+.... +. |.... +.. ........++.++++++++++.++.++
T Consensus 328 Yllv~~~~~~~~~~d~~~~~~~~l~~~~~g~~~f~~~~~~p~~~gL~~~~~~~~~~~~~~~lI~ig~~~stlss~la~l~ 407 (953)
T TIGR00930 328 YLGSVVLFGACVVRDATGDKNDTLVTNCTSAACFSECAHNTCSYGLMNNLQVMSLVSPFPPLITAGIFSATLSSALASLV 407 (953)
T ss_pred HHHHHHHHHccccHhhhcccchhhhcccccchhhhhhcccchhhhhcchHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988877777554321 11 11111 111 111224578889999999999999999
Q ss_pred hHHHHHHHhhcCCCCc--hhhhhhcCCcccchHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q 009714 313 VQSRLYLGLGRDGLLP--SIFAKVHPKRHTPVHSQVWVGIVAGILAGLFNVRVLSHILSVGTLTGYSVVSACVIALRWKD 390 (528)
Q Consensus 313 ~~sR~l~a~a~dg~lP--~~~~~~n~r~~~P~~a~l~~~~i~~~~~~~~~~~~l~~~~~~~~l~~y~~~~~~~~~~r~~~ 390 (528)
++||++++|||||.+| ++|+|+|+|+++|++|++++++++.++.++.+++.+..+.+...+++|.+++++++++|+++
T Consensus 408 ~asRvl~AmArDg~lP~l~~fakv~~k~~tP~~Alllt~iIa~l~ili~~l~~ia~lis~~fLl~Y~lvnla~~~l~~~~ 487 (953)
T TIGR00930 408 SAPRLFQALCKDNIYPFLQFFGKGYGKNGEPLRAYLLTAFIAEGFILIAELNTIAPIISNFFLASYALINFSCFHASLLR 487 (953)
T ss_pred HHHHHHHHHHhcCCCCcchhhcccCCCCCCcHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999 89999999999999999999999999888889999999999999999999999999988666
Q ss_pred CCCCCCcccccccchhhHHHHHHHHHhhhhcchhhccchhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCccchhHH
Q 009714 391 RTSRNDSSRLTSAWRQGVICLIIIACCGFGAGLFYRINASYILLIVAVVIAVLASAMLCLRHGYSDPPGFSCPGVPLLPA 470 (528)
Q Consensus 391 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~p~~~~ 470 (528)
+... ++.||. ..+++|+
T Consensus 488 ~p~~--------------------------------------------------------------RP~fk~-~~~~~sl 504 (953)
T TIGR00930 488 SPGW--------------------------------------------------------------RPRFKY-YHWWLSL 504 (953)
T ss_pred CCCC--------------------------------------------------------------CCcccc-chHHHHH
Confidence 4332 122444 3468999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhcccccC
Q 009714 471 VSIFFNLFLFAQLHYEAWWRFVILSFISIGLYAFYGQYHAD 511 (528)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~~~ 511 (528)
++.+.|++++...+ |....+.+++++++|+++.+|+.+
T Consensus 505 lG~l~c~~lmf~i~---w~~ali~~~i~~~ly~~~~~~~~~ 542 (953)
T TIGR00930 505 LGASLCCAIMFLIS---WWAALVAMVIALFLYKYVTYKKPD 542 (953)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhccCCC
Confidence 99999999888765 556666677788888866666544
No 30
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=100.00 E-value=4.5e-43 Score=368.86 Aligned_cols=377 Identities=21% Similarity=0.291 Sum_probs=275.6
Q ss_pred cccccccCcccccCCCChHHHHHHHHHHHHH-HHHHHHHHHHhccCCCCCCchhhhhHHHhchhHHHHHHHHHHHHHHHH
Q 009714 25 APEYSLSPVPWLATPVQVRVTISFLLAGAAS-VLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIG 103 (528)
Q Consensus 25 ~~~~~~~~~~~~~~~~G~~~~l~~~l~~l~~-~~~a~~~ael~~~~P~~~Gg~y~~~~~~~g~~~gf~~gw~~~l~~~~~ 103 (528)
..+.+++..+..+ ..|++++++|++++++. ++.+++++||++++|+ +||.|.|++|++||.+||.++|.+|+++...
T Consensus 14 ~~v~~~~~~~~~a-~~G~~~~~~~~i~~~~~~ip~al~~aEL~~~~P~-~GG~y~~~~~a~G~~~gf~~gw~~w~~~~~~ 91 (474)
T TIGR03813 14 TAVVSLRGLPAEA-EYGLSAAFYYLFAAIFFLVPVSLVAAELATAWPE-KGGVFRWVGEAFGARWGFLAIFMLWAQVTIW 91 (474)
T ss_pred HHHHHhhcchHHH-HhhHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC-CCCceeeHhhhcChhHHHHHHHHHHHHHHHH
Confidence 3455666666554 58899999999999876 5799999999999999 9999999999999999999999999999776
Q ss_pred HHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH-HHH
Q 009714 104 AASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTVV-KVI 182 (528)
Q Consensus 104 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ln~~g~~~~~~~~~i~~~~-~i~ 182 (528)
.+......+..+..+..... ..... .........+.+++.++.+.+|++|+|..+++|++...+ +++
T Consensus 92 ~p~~~~~~~~~~~~~~~~~~-~~~~~-----------~~~~~~~~~~~l~~~~~~~~in~~gv~~~~~i~~~~~~~~~ii 159 (474)
T TIGR03813 92 FPTVLTFGAVSLAFIGPEAT-VDESL-----------AGNKLYVLVSVLFVYWLATFIALRGVAAFTKVAKWGGIVGTII 159 (474)
T ss_pred HHHHHHHHHHHHHHhcCccc-cCccc-----------ccccHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence 65544333333322211000 00000 011222234566777788999999999999999987544 455
Q ss_pred HHHHHHhhhccc----ccc---cCCCCCCCC--ChHHHHHHHHHHHHhhhhhHHHhhhhhhhcCCCCchhHHHHHHHHHH
Q 009714 183 IVIVVIFAGAFE----VDV---SNWSPFAPN--GFKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLIC 253 (528)
Q Consensus 183 ~l~~~~i~~~~~----~~~---~~~~~~~~~--~~~~~~~~~~~~~~~f~G~e~~~~~a~E~k~p~k~ip~ai~~s~~~~ 253 (528)
+++++++.+... .+. .+++++.|+ ++..+..+. ..+|+|.|+|.++..+||+|||+||+|||+..+..++
T Consensus 160 ~~~~~ii~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~~af~G~e~~~~~a~E~knP~r~iPrAi~~~~~~~ 238 (474)
T TIGR03813 160 PAAILVILGISYLLTGGESQIPLRWDDAFPDFTNFDNVVLAA-SIFLFYAGMEMNAVHVKDVDNPDKNYPIAILIAALGT 238 (474)
T ss_pred HHHHHHHHHHHHHHcCCCCCCCCCHHHhCCCccccccHHHHH-HHHHHHhchhHhHHHHHhccCcccchhHHHHHHHHHH
Confidence 555544444321 011 112233343 333333332 4578999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccccccCCCCcH----HHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCCCCch
Q 009714 254 AALYVGVSLVLTGMVPYKFLDEDAP----LSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPS 329 (528)
Q Consensus 254 ~i~y~l~~~~~~~~~~~~~~~~~~p----~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~ 329 (528)
.++|++.+++.....|+++...+++ +.+.++..+.++...++.+...++.+++.++.+.+.||+++++||||.+||
T Consensus 239 ~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~l~~~~~~~~~~sR~~~a~ardg~lP~ 318 (474)
T TIGR03813 239 VLIFVLGTLAIAFIIPREDISLTQSLLVAFDNAFHWAGLSWLGPILAFALAIGVLAGVVTWVAGPSSGMLAVAKAGYLPT 318 (474)
T ss_pred HHHHHHHHHHHHhccCHhhccccccHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCH
Confidence 9999999999999998887654333 445555556677777888888889999999999999999999999999999
Q ss_pred hhhhhcCCcccchHHHHHHHHHHHHHHHhh----C----HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccccc
Q 009714 330 IFAKVHPKRHTPVHSQVWVGIVAGILAGLF----N----VRVLSHILSVGTLTGYSVVSACVIALRWKDRTSRNDSSRLT 401 (528)
Q Consensus 330 ~~~~~n~r~~~P~~a~l~~~~i~~~~~~~~----~----~~~l~~~~~~~~l~~y~~~~~~~~~~r~~~~~~~~~~~~~~ 401 (528)
+++|+| |+|+|++|++++.+++.++.+.. + ++.+.++.+...++.|.+.+.+.+++|+|+|+.+++.+-+.
T Consensus 319 ~~~kv~-k~~~P~~a~~~~~~~~~~l~~~~~~~~s~~~~f~~l~~~~~~~~~i~y~~~~~a~i~lr~~~~~~~rpf~~p~ 397 (474)
T TIGR03813 319 FFQKTN-KNGMPIHIMFVQGIAVSVLSVLFVVMPSVQAAFQILSQLTVILYLVMYLLMFASAIYLRYSQPDRPRPYRIPG 397 (474)
T ss_pred HHhccC-CCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEecC
Confidence 999999 89999999999988765433321 2 45677777777889999999999999988888776655544
Q ss_pred ccchhhHHHHHHHHHh
Q 009714 402 SAWRQGVICLIIIACC 417 (528)
Q Consensus 402 ~~~~~~i~~~~~~~~~ 417 (528)
+++....+..+.+..+
T Consensus 398 g~~g~~~~~~~~~~~~ 413 (474)
T TIGR03813 398 GLAGMWFIGGLGFVGS 413 (474)
T ss_pred CccchhHHHHHHHHHH
Confidence 5554333433333333
No 31
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=5.2e-43 Score=349.97 Aligned_cols=371 Identities=20% Similarity=0.269 Sum_probs=302.3
Q ss_pred ccccccccccccccC-cccccC-CCChHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCchhhhhHHH----hchhHHHH
Q 009714 18 SASARLLAPEYSLSP-VPWLAT-PVQVRVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTA----FNELTAFL 91 (528)
Q Consensus 18 ~~~~~~~~~~~~~~~-~~~~~~-~~G~~~~l~~~l~~l~~~~~a~~~ael~~~~P~~~Gg~y~~~~~~----~g~~~gf~ 91 (528)
+.+.+.++..-++++ ..+-.. .++|.+.++|++++.+.++++++++|+++.+|+ +||.|.|+... +||..+|+
T Consensus 57 g~sFs~~g~~~~i~tsm~~gl~~gG~~~~vwgwlIa~~~~i~va~slaEl~Sa~Pt-sGgLy~waa~lap~k~~~~~sw~ 135 (550)
T KOG1289|consen 57 GISFSLMGLLPGIATSMAYGLGSGGPPTLVWGWLIAGFFSICVALSLAELCSAMPT-SGGLYFWAAVLAPPKYGPFASWV 135 (550)
T ss_pred HHHHHHhcchhhhhhheeeccccCChHHHHHHHHHHHHHHHHHHhHHHHHHhhCCC-CCcHHHHHHHhcCcchhhHHHHH
Confidence 445577777777666 344344 445599999999999999999999999999999 99999999998 56788899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhhhhHHHH
Q 009714 92 VFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSV 171 (528)
Q Consensus 92 ~gw~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ln~~g~~~~~~ 171 (528)
+||...+++.+..++...+.++.+....... .|++.. +...+..+..++.++..++|+.+.|...+
T Consensus 136 ~Gw~~~~g~~~~~aSi~~S~A~~i~~~v~l~------np~y~~--------~~~~~~~v~~ai~~v~~lln~~p~r~l~~ 201 (550)
T KOG1289|consen 136 TGWLNYLGQATGVASITYSLAQLILGAVSLT------NPNYEP--------TNYHQFGVFEAILFVHGLLNSLPTRVLAR 201 (550)
T ss_pred HHHHHHHHHHhhchhhhHHHHHHHHHHHhhc------CCCCcc--------cceEeehHHHHHHHHHHHHhcCCcHHHHH
Confidence 9999999999999999999999998877642 222222 22334458889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhccc--------------ccccCCCCCCCCChHHHHHHHHHHHHhhhhhHHHhhhhhhhcC
Q 009714 172 LNSCMTVVKVIIVIVVIFAGAFE--------------VDVSNWSPFAPNGFKEILTGATVVFFAYVGFDAVANSAEESKK 237 (528)
Q Consensus 172 ~~~i~~~~~i~~l~~~~i~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~k~ 237 (528)
++.+...+.++.+++..|..... .+.+|.+++.++|+ .+..++....|++.|+|+++|++||+||
T Consensus 202 I~~~~~~~~ll~~~i~~I~lla~~~~k~gFns~~~iF~~f~N~sgw~~~G~-afil~f~~~~wt~sGyDa~~H~aEE~~n 280 (550)
T KOG1289|consen 202 INSVSVYLNLLFLVILMITLLAASSKKTGFNSGSFIFGKFNNYSGWKNNGW-AFILGFFNPAWTMSGYDAAAHMAEETKN 280 (550)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCceeeecccccCCCCcchH-HHHHhhccceeEEeccCchHHHHHHhcc
Confidence 99999999888877776653322 23344556666777 7888899999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHhcccccc---CCC--CcHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHH
Q 009714 238 PQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKF---LDE--DAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLY 312 (528)
Q Consensus 238 p~k~ip~ai~~s~~~~~i~y~l~~~~~~~~~~~~~---~~~--~~p~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 312 (528)
|+|+.||+|+.++.+..++-....+.+..+.|+|. +++ .+|+.+.+.+..++-....+....+++.+.+..+.+.
T Consensus 281 Ask~aPrgIi~s~~i~~i~gw~~~I~i~~~i~~D~~~v~ns~~g~p~~~i~~~~lg~k~~v~~~~l~ii~~f~~gi~s~~ 360 (550)
T KOG1289|consen 281 ASKAAPRGIISSIAIGFILGWIIIIGIAYTIPDDLDAVLNSSLGQPIVQIYYQALGKKGAVFLLSLIIIALFFMGISSLT 360 (550)
T ss_pred hhhhccHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHhcCCCCChHHHHHHHhcCCCceEehhHHHHHHHHHhhHHHHH
Confidence 99999999999999999999999999999888542 233 4899999998877766688888888899999999999
Q ss_pred hHHHHHHHhhcCCCCc--hhhhhhcCCcccchHHHHHHHHHHHHHHHhh--C---HHHHHHHHHHHHHHHHHHHHHHHHh
Q 009714 313 VQSRLYLGLGRDGLLP--SIFAKVHPKRHTPVHSQVWVGIVAGILAGLF--N---VRVLSHILSVGTLTGYSVVSACVIA 385 (528)
Q Consensus 313 ~~sR~l~a~a~dg~lP--~~~~~~n~r~~~P~~a~l~~~~i~~~~~~~~--~---~~~l~~~~~~~~l~~y~~~~~~~~~ 385 (528)
+.||..|+.||||.+| ++++|+||++++|.+|+++..+++.++.++. + ++++.++..++...+|.++..+.+.
T Consensus 361 a~SR~v~afaRDg~LP~S~~~~~v~~~t~~P~nAv~l~~i~s~llgll~L~s~~Af~Alfs~a~i~l~~Ay~iP~~~rlf 440 (550)
T KOG1289|consen 361 ASSRLVYAFARDGGLPFSKYLAKVNPQTKVPLNAVLLSCIISILLGLLILASATAFNALFSAAAIALFIAYAIPIFCRLF 440 (550)
T ss_pred HHHHHHhhhhccCCCCCcceeeecCCCCCCcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHhhee
Confidence 9999999999999999 9999999888999999999999988877654 3 4566666666777899999988887
Q ss_pred hhhcCCCCCCCcccccccchhh
Q 009714 386 LRWKDRTSRNDSSRLTSAWRQG 407 (528)
Q Consensus 386 ~r~~~~~~~~~~~~~~~~~~~~ 407 (528)
++|++.++.+ ++++++..+
T Consensus 441 ~~r~~f~~gp---~~lGk~s~p 459 (550)
T KOG1289|consen 441 FGRDDFRPGP---FNLGKFSKP 459 (550)
T ss_pred ecccccCCCC---ccccccccc
Confidence 7766444333 444444433
No 32
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=100.00 E-value=1.3e-41 Score=358.39 Aligned_cols=356 Identities=19% Similarity=0.219 Sum_probs=260.7
Q ss_pred ccccCcccccCCCChHHHHHHHHHHHH-HHHHHHHHHHHhccCC-CCCCchhhhhHHHhchhHHHHHHHHHHHHHHHHHH
Q 009714 28 YSLSPVPWLATPVQVRVTISFLLAGAA-SVLNALCYAELASRFP-AVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAA 105 (528)
Q Consensus 28 ~~~~~~~~~~~~~G~~~~l~~~l~~l~-~~~~a~~~ael~~~~P-~~~Gg~y~~~~~~~g~~~gf~~gw~~~l~~~~~~a 105 (528)
.+++..|. ....|.+.+..|++++++ .++.+++++||++++| + +||.|.|++|++||.+||.++|.+|+.+....+
T Consensus 20 ~~~~~~~~-~a~~G~~~i~~~i~~~l~~~lp~al~~AELas~~p~~-~GG~y~wv~~a~G~~~Gf~~~~~~W~~~~~~~~ 97 (507)
T TIGR00910 20 LAVYEYPT-FATSGFHLVFFLLLGGILWFIPVALCAAEMATVDGWE-EGGIFAWVSNTLGERFGFAAIFFGWFQIAIGFI 97 (507)
T ss_pred HHHHhhHH-HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCC-CCCeeeehhhccCccHHHHHHHHHHHHHHHHHH
Confidence 34454453 335678888888998887 6789999999999997 8 899999999999999999999999998876555
Q ss_pred HHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH-H
Q 009714 106 SIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTVVKVII-V 184 (528)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ln~~g~~~~~~~~~i~~~~~i~~-l 184 (528)
...........+... .+... .+.....+..++++++.+++|++|.|..++++++..+..++. +
T Consensus 98 ~~~~~~~~~~~y~~~-~~~~~---------------~~~~~~~i~~l~i~~~~t~~n~~G~k~~~~i~~i~~~~~~~i~~ 161 (507)
T TIGR00910 98 PMIYFILGALSYILK-FPALN---------------EDPIIKFIAALIIFWALAFSQFGGTKRTAKIAKAGFFAGILIPA 161 (507)
T ss_pred HHHHHHHHHHHHHhc-Cchhc---------------cCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 443333333333221 11110 011223345667788899999999999999999876544333 3
Q ss_pred HHHHhhhccc---ccc----cCCCCCCCCC-hHHHHHHHHHHHHhhhhhHHHhhhhhhhcCCCCchhHHHHHHHHHHHHH
Q 009714 185 IVVIFAGAFE---VDV----SNWSPFAPNG-FKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAAL 256 (528)
Q Consensus 185 ~~~~i~~~~~---~~~----~~~~~~~~~~-~~~~~~~~~~~~~~f~G~e~~~~~a~E~k~p~k~ip~ai~~s~~~~~i~ 256 (528)
+++++.+... .++ .+.+++.|+. ..+.+..+...+|+|.|+|.+++++||+|||+||+|||++.+.+++.++
T Consensus 162 ~ili~l~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~faf~G~E~~a~~a~E~knP~r~~PrAi~~~~i~~~~l 241 (507)
T TIGR00910 162 FILFALAAAYFHGGAPIAIEIDSHAFFPDFSKVGTLVVFVAFIGAYMGVEASASHINELENPGRDYPLAMILLMIAAICL 241 (507)
T ss_pred HHHHHHHHHHHhCCCccccCCcHHhcCCCcccccHHHHHHHHHHHHhcHHHHHHHHHHccCCcccccHHHHHHHHHHHHH
Confidence 3333332221 111 1122333431 1134445555689999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccccccCCCCcHHHHH----HHHcC--hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCCCCchh
Q 009714 257 YVGVSLVLTGMVPYKFLDEDAPLSDA----FASRG--LKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSI 330 (528)
Q Consensus 257 y~l~~~~~~~~~~~~~~~~~~p~~~~----~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~ 330 (528)
|.+..+.+....|+++.+..++..+. ....+ .++...++.+..+++.+++.++++++.||+++++||||.+|++
T Consensus 242 ~~l~~~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~l~~~~~~i~~~sR~l~~~ardg~lP~~ 321 (507)
T TIGR00910 242 DAIGGFSIAAVIPGKEINLSAGVIQTFQTLILHFAHEIEWLVKVIAALIAFGVLAEIASWIVGPSRGMFAAAQKGLLPAA 321 (507)
T ss_pred HHHHHHHHheecChhhcccchHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcCHH
Confidence 99988888888888877644433333 33333 2566678888889999999999999999999999999999999
Q ss_pred hhhhcCCcccchHHHHHHHHHHHHHHHhhC---------HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccccc
Q 009714 331 FAKVHPKRHTPVHSQVWVGIVAGILAGLFN---------VRVLSHILSVGTLTGYSVVSACVIALRWKDRTSRNDSSRLT 401 (528)
Q Consensus 331 ~~~~n~r~~~P~~a~l~~~~i~~~~~~~~~---------~~~l~~~~~~~~l~~y~~~~~~~~~~r~~~~~~~~~~~~~~ 401 (528)
|+|+| |+|+|+++++++.+++.++.+... +..+.++.+...++.|++..++.+++|+|+|+.+|+++.+.
T Consensus 322 ~~k~n-k~~~P~~a~~~~~~i~~l~~~~~~~~~~~~~~~f~~l~~~~~~~~~i~Y~l~~~a~i~lr~k~p~~~rpf~~pg 400 (507)
T TIGR00910 322 FAKMN-KHEVPVPLVIIQGIITSIAGAILTFGGGGNNLSFLIAIALTVVIYLCAYFLFFIGYFVLILKHPDLKRTFNIPG 400 (507)
T ss_pred HHhhC-cCCCcHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeEecC
Confidence 99999 889999999999988876543321 23445567778889999999999999999988765544433
Q ss_pred c
Q 009714 402 S 402 (528)
Q Consensus 402 ~ 402 (528)
+
T Consensus 401 ~ 401 (507)
T TIGR00910 401 G 401 (507)
T ss_pred C
Confidence 3
No 33
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=100.00 E-value=1.4e-41 Score=354.16 Aligned_cols=338 Identities=32% Similarity=0.525 Sum_probs=290.5
Q ss_pred ccCCCChHHHHHHHHHHHHH-HHHHHHHHHHhccCCCCCCchhhhhHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009714 36 LATPVQVRVTISFLLAGAAS-VLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASY 114 (528)
Q Consensus 36 ~~~~~G~~~~l~~~l~~l~~-~~~a~~~ael~~~~P~~~Gg~y~~~~~~~g~~~gf~~gw~~~l~~~~~~a~~~~~~~~~ 114 (528)
..+.+|+..+++|++++++. ++.+++|+|+++++|+ +||.|.|++|.+||.+|+.++|.+++.+....+..+...+++
T Consensus 24 ~~~~~G~~~~~~~~i~~~~~~l~~a~~~~el~~~~p~-~GG~y~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (426)
T PF13520_consen 24 AAASAGPSAILAWIIAALLFFLPIALSYAELSSAYPS-AGGIYVWVSRAFGPFWGFIVGWLYWVAYILSLASVASSFASY 102 (426)
T ss_dssp HHTCTGCHHHHHHHHHHHHHHHHHHHHHHHHHTTTTS-STTHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC-cCeeeehhhhcccccchhcccceeEEEeeccccccccchhhh
Confidence 46678999999999999998 8999999999999999 999999999999999999999999999999988888888888
Q ss_pred HHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH-HHHHHHHhhhcc
Q 009714 115 VVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTVVKV-IIVIVVIFAGAF 193 (528)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ln~~g~~~~~~~~~i~~~~~i-~~l~~~~i~~~~ 193 (528)
+...++ + . ..+++....+++++++++.+.+|++|.|..+|+|++.+.+++ ..++++++.++.
T Consensus 103 ~~~~~~--~----~-----------~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~~l~~~i~~~~~ 165 (426)
T PF13520_consen 103 LLSLFG--P----D-----------LNPSPWPQFLIAIILILLFTLLNLLGIKLSGKIQNILTVIKIVIPLLVLIILGIV 165 (426)
T ss_dssp HTTTTT--G----G-----------GTCSHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccc--c----c-----------cccccchheeeeecccccceEeeechhhhhhhhhhhhhhhhhhhhhhhheeEEEe
Confidence 765432 1 0 001133455788899999999999999999999999999999 577777777666
Q ss_pred cccccC-------CCCCCCCChHHHHHHHHHHHHhhhhhHHHhhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 009714 194 EVDVSN-------WSPFAPNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTG 266 (528)
Q Consensus 194 ~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~k~p~k~ip~ai~~s~~~~~i~y~l~~~~~~~ 266 (528)
..+.+. .+++.|+++.+++.++...+|+|.|+|.+++++||.|| ||+||++..+.+++.++|.+.......
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~--k~ip~ai~~~~~~~~i~y~l~~~~~~~ 243 (426)
T PF13520_consen 166 SFSFSGFNSLSFSLSTFFPSGWPGFLAGFSVAFFAFSGFEAIASLAEENKN--KTIPRAIIISIIIVAIIYILFSIALLG 243 (426)
T ss_dssp STTCCHHH----SHSCSSCSSSSHHHHHHHHHGGGGTTTTHHHHGGGGSSS--HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred eecccccccccccccccCCccccchhhHHHHHHhhcccccccccccccccc--hhheeecccchhHHHHHHhhhhheeee
Confidence 533221 23455667767899999999999999999999999777 899999999999999999999999999
Q ss_pred ccccccCCCC----cHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCCCCchhhhhhcCCcccch
Q 009714 267 MVPYKFLDED----APLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPV 342 (528)
Q Consensus 267 ~~~~~~~~~~----~p~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~~~~~n~r~~~P~ 342 (528)
..|+++.+.. ++....++..++++...++.+...++.+++.++.+.+.+|++++|||||.+|++++|+| |+|+|+
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~-k~~~P~ 322 (426)
T PF13520_consen 244 ALPDDELANSSNSPSPFAVLASAVGGSWLAIIVSIAAILSLFGSINAFIFGASRLLYAMARDGVLPKWFAKVN-KFGTPY 322 (426)
T ss_dssp TSTHCHHHTTTCHHCHHHHHHHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSGGGGTTS-SSSSCH
T ss_pred cccchhhhcccccccccchhhccccccccccccccccccccccccchhhcchhhcccccccccchhhhhhhcc-ccCCce
Confidence 9998876542 25677778887789999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHHHHHHHHhh------CHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCC
Q 009714 343 HSQVWVGIVAGILAGLF------NVRVLSHILSVGTLTGYSVVSACVIALRWKDRTSR 394 (528)
Q Consensus 343 ~a~l~~~~i~~~~~~~~------~~~~l~~~~~~~~l~~y~~~~~~~~~~r~~~~~~~ 394 (528)
+++++..+++.++.... +++.+.+..++...+.|.+...+.+++|+|+|+.+
T Consensus 323 ~a~~~~~~i~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (426)
T PF13520_consen 323 NAIILVAVISSILLLLFLFIPQSSFDILVSLSSVGYLISYILVILAVLFLRRKRPDLK 380 (426)
T ss_dssp HHHHHHHHHHHHHHHHTTTSSSSHHHHHHHHHHHHTHHHHHHHHHHHHHTHHHSCSSG
T ss_pred eeehhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcC
Confidence 99999999986665432 35788889999999999999999999999988763
No 34
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=3.9e-41 Score=355.03 Aligned_cols=337 Identities=37% Similarity=0.545 Sum_probs=290.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCchhhhhHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009714 42 VRVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILEL 121 (528)
Q Consensus 42 ~~~~l~~~l~~l~~~~~a~~~ael~~~~P~~~Gg~y~~~~~~~g~~~gf~~gw~~~l~~~~~~a~~~~~~~~~~~~~~~~ 121 (528)
+...++|++++++....+++++|+++.+|+ +||.|.|+++.+||+.|+.++|.+++++....+..+...++++..+++.
T Consensus 45 ~~~~~~~li~~~~~~~~a~~~~el~~~~p~-~GG~y~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (466)
T COG0531 45 PAAILAWLIAGIIILFLALSYAELSSAIPS-AGGAYAYAKRALGPRLGFLAGWLYLLAYVIALAAIAIGAASYLSYLFPG 123 (466)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCeeeehhhhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 556666999999999999999999999999 9999999999999999999999999999999999999999988776542
Q ss_pred cccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCC
Q 009714 122 FPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWS 201 (528)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ln~~g~~~~~~~~~i~~~~~i~~l~~~~i~~~~~~~~~~~~ 201 (528)
.+... . +.....+++.+++++.+.+|++|+|..++++.+.+.++++.++.+++.+..+.+.++.+
T Consensus 124 ~~~~~--~-------------~~~~~~~~~~~~~~~~~~ln~~G~~~~~~~~~~~~~~~i~~~i~~~i~~~~~~~~~~~~ 188 (466)
T COG0531 124 PGLLS--I-------------GPLLIILIALALIALLTLLNLRGIKASAKINSIITILKIIILLIFIILGLFAFGFSNGN 188 (466)
T ss_pred chhhc--C-------------CchHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccc
Confidence 11000 0 01345568999999999999999999999999999999999999998877765554322
Q ss_pred CCC-----CCChHHHHHHHHHHHHhhhhhHHHhhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhccccccCCCC
Q 009714 202 PFA-----PNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDED 276 (528)
Q Consensus 202 ~~~-----~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~k~p~k~ip~ai~~s~~~~~i~y~l~~~~~~~~~~~~~~~~~ 276 (528)
.+. ......++.++...+|+|.|+|.+++.+||+|||+||+||++..+.+.+.++|++.+.......|.+++...
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~knp~r~ip~aii~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ 268 (466)
T COG0531 189 LFAPFNPGGGSFGGILAAILLAFFAFTGFEAIATLAEEVKNPKRTIPRAIILSLLIVLILYILGALVIVGVLPAGDLAAS 268 (466)
T ss_pred cCCCcccccchHHHHHHHHHHHHHHhhcHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHhCccHHHHhcc
Confidence 221 123446888899999999999999999999999999999999999999999999999999999987654433
Q ss_pred ---cHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCCCCchhhhhhcCCcccchHHHHHHHHHHH
Q 009714 277 ---APLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAG 353 (528)
Q Consensus 277 ---~p~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~~~~~n~r~~~P~~a~l~~~~i~~ 353 (528)
.|..+.+....+.+...++.+..+.+.+++.+++..+.+|.+++|||||.+|++++|+|+|+++|++++++..+++.
T Consensus 269 ~~~~p~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~~~~~ardg~lP~~~~~~~~~~~~P~~a~~~~~ii~~ 348 (466)
T COG0531 269 APSAPLALAALFGGGNWGAIIIAILALLSLFGSLLAWILAVSRVLYAMARDGLLPKFFAKVNPKGRTPVIALILTGIISL 348 (466)
T ss_pred CCCccHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 78999988888888999999999999999999999999999999999999999999999998999999999999988
Q ss_pred HHHHhh-----CHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCC
Q 009714 354 ILAGLF-----NVRVLSHILSVGTLTGYSVVSACVIALRWKDRTSR 394 (528)
Q Consensus 354 ~~~~~~-----~~~~l~~~~~~~~l~~y~~~~~~~~~~r~~~~~~~ 394 (528)
.+.... .++.+.++.+...++.|.+...+.+.+|+|+++.+
T Consensus 349 ~l~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~ 394 (466)
T COG0531 349 ILLLLFPLSSIAFNALVSLASVAFLIAYLLVALALLVLRRKKPDLK 394 (466)
T ss_pred HHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Confidence 333332 25788899999999999999999999998876653
No 35
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=100.00 E-value=2.3e-44 Score=379.54 Aligned_cols=355 Identities=28% Similarity=0.400 Sum_probs=294.3
Q ss_pred ccccccccccccCcccccCCCCh-HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCchhhhhHHHhchhHHHHHHHHHHH
Q 009714 20 SARLLAPEYSLSPVPWLATPVQV-RVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLML 98 (528)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~G~-~~~l~~~l~~l~~~~~a~~~ael~~~~P~~~Gg~y~~~~~~~g~~~gf~~gw~~~l 98 (528)
+.+.+.|...+...+.....+|| +.++++++++++++.++.+++||++++|+ +||.|.|++|.+||..|+.+||.+|+
T Consensus 6 ~ig~~ig~g~f~~~g~~~~~~G~~~~~la~li~~i~~~~~~~~~~ems~~~p~-~Gg~y~y~~~~lg~~~Gf~~gw~y~~ 84 (478)
T PF00324_consen 6 SIGGIIGTGLFLGSGFAIAAAGPGGAPLAYLIAGIIVLLVALSLAEMSRRFPS-AGGFYAYASRGLGPALGFAAGWAYWL 84 (478)
T ss_pred eHHHHHHHHHHHHHHHHHHhcccccchhHhHHHHHHHHhhhhhhhhhhhhhcc-ccchhhhhhhccCCcCCceeeHHHHH
Confidence 44555666666666666777888 89999999999999999999999999998 99999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccCCCC-ccccCCCccccccchhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 009714 99 DYHIGAASIARSLASYVVSILELFPFFKENIP-SWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMT 177 (528)
Q Consensus 99 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ln~~g~~~~~~~~~i~~ 177 (528)
.+....+......+.+++.+.. . ...+ .|... .+++.++.++.+.+|++|+|..++++.++.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~------------~~~~~i~~~~~~~l~~~gv~~~~~~~~~~~ 147 (478)
T PF00324_consen 85 SYIAAIAAEATAAGSFLQFWGY-F----PGLPSTWVWG------------ILIAIIFILLITLLNLFGVRVSGKIEFILT 147 (478)
T ss_pred HHHHHHHhhhhhhhhhhccccc-c----cccccccccc------------chhhhhhhhhhhhhhhhhhhccchHHHHHH
Confidence 9999999988887777665411 1 1112 22210 035778888899999999999999999999
Q ss_pred HHHHHHHHHHHhhhcc--ccc--ccCC---------CCCCCCC--------hHHHHHHHHHHHHhhhhhHHHhhhhhhhc
Q 009714 178 VVKVIIVIVVIFAGAF--EVD--VSNW---------SPFAPNG--------FKEILTGATVVFFAYVGFDAVANSAEESK 236 (528)
Q Consensus 178 ~~~i~~l~~~~i~~~~--~~~--~~~~---------~~~~~~~--------~~~~~~~~~~~~~~f~G~e~~~~~a~E~k 236 (528)
.++++.++.+++.++. ..+ +.+. .+..+++ +.+++.++..++++|.|+|+++..+||+|
T Consensus 148 ~i~~~~li~~ii~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~a~~a~E~k 227 (478)
T PF00324_consen 148 IIKLIALIAFIIVGVIILFFGGGPSNGRYWGDPGSFANNFPPGFTDPSGGGFSGFFAALVFAFFAFVGFESIAILAEEAK 227 (478)
T ss_pred HHhhhHhhhhhhhcccccccccCCCcccccccccccccccccccccccccchhHHHHhhhhhhcccccccccccccccCC
Confidence 9999999988887721 111 1111 1123444 78899999999999999999999999999
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHhccccccCCCC------cHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHH
Q 009714 237 KPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDED------APLSDAFASRGLKYVSVLISFGAVAGLTTTLLVG 310 (528)
Q Consensus 237 ~p~k~ip~ai~~s~~~~~i~y~l~~~~~~~~~~~~~~~~~------~p~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 310 (528)
||||++|||+..+++.++++|++...+.....|+++.+.. +|+.++.+..+.++...++.+..+.+.+++.++.
T Consensus 228 ~P~k~IPra~~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~i~~~~~l~s~~s~~~~~ 307 (478)
T PF00324_consen 228 NPRKTIPRATLLSVLRIGVFYVLTSYALTLAVPYDNLGLTAASNSASPFVIAAQYSGGPWLAWIVNAGILISAFSSANAS 307 (478)
T ss_pred CchhhhhhHhhhhhhhhhhhhhhhhhhcccccCccchhhccccccccchhhhhhhcccccccceecccchhhhhhhhhhh
Confidence 9999999999999999999999999999999998875321 4899999999999999999999999999999999
Q ss_pred HHhHHHHHHHhhcCCCCchhhhhhcCCcccchHHHHHHHHHHHHHHHhhC------HHHHHHHHHHHHHHHHHHHHHHHH
Q 009714 311 LYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLFN------VRVLSHILSVGTLTGYSVVSACVI 384 (528)
Q Consensus 311 ~~~~sR~l~a~a~dg~lP~~~~~~n~r~~~P~~a~l~~~~i~~~~~~~~~------~~~l~~~~~~~~l~~y~~~~~~~~ 384 (528)
++..||++++|||||.+|+++.++++|+|+|++|++++.+++.+..+..+ ++.+.+..++..+..|.+.+++.+
T Consensus 308 ~~~~sR~l~ama~dg~lP~~~~~~~~k~~~P~~Ai~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~s~~ 387 (478)
T PF00324_consen 308 LYAASRLLYAMARDGLLPKKFFARHPKNGVPYVAILVSSIISLLVLLLGSFSPGIVFNWLLNISTISNLIVYILINISYI 387 (478)
T ss_pred hcccceeehhhhhhhhhhhhhhhhhhcCCceEEEEeeehhchheeeeeccchhhHHHHHHhhhhhhhhhhHHHhhhhhhh
Confidence 99999999999999999966666666999999999999888777665432 345677777888899999999999
Q ss_pred hhhhcCCC
Q 009714 385 ALRWKDRT 392 (528)
Q Consensus 385 ~~r~~~~~ 392 (528)
++|++.+.
T Consensus 388 ~~r~~~~~ 395 (478)
T PF00324_consen 388 RFRKKFKY 395 (478)
T ss_pred hhhhhhcc
Confidence 88877544
No 36
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=100.00 E-value=9.4e-39 Score=337.58 Aligned_cols=359 Identities=17% Similarity=0.213 Sum_probs=254.9
Q ss_pred ccCcccccCCCChHHHHHHHHHHHH-HHHHHHHHHHHhccCCCCCCchhhhhHHHhchhHHHHHHHHHHHHHHHHHHHHH
Q 009714 30 LSPVPWLATPVQVRVTISFLLAGAA-SVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIA 108 (528)
Q Consensus 30 ~~~~~~~~~~~G~~~~l~~~l~~l~-~~~~a~~~ael~~~~P~~~Gg~y~~~~~~~g~~~gf~~gw~~~l~~~~~~a~~~ 108 (528)
+...+.....+|++.++.|++++++ .++.+++++|+++++|+++||.|+|+++.+||.+||.++|.+|.++....+..+
T Consensus 25 ~~~~~~~~~~~G~~~i~~~~i~~~~~~l~~al~~aEL~s~~P~~aGG~Y~w~~~~~G~~~gf~~~w~~~~~~~~~~~~~~ 104 (496)
T PRK15238 25 FANSPRAFYLMGYSAIPWYILSAILFFIPFALMMAEYGSAFKDEKGGIYSWMNKSVGPKFAFIGTFMWFASYIIWMVSTA 104 (496)
T ss_pred CCchHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHH
Confidence 3344543456889888888888877 578999999999999952699999999999999999999998888876654443
Q ss_pred HHHHH-HHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 009714 109 RSLAS-YVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVV 187 (528)
Q Consensus 109 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ln~~g~~~~~~~~~i~~~~~i~~l~~~ 187 (528)
..... .....++.. ..+.|...+ ........+++++.+++.+.+|.+|+|..+++|++.+.+++...+++
T Consensus 105 ~~~~~~~~~~~~~~~-----~~~~~~~~~----~~~~~~~~~~a~~~~~~~t~vn~~g~~~~~~i~~~~~~~~~~~~~~~ 175 (496)
T PRK15238 105 SKIWIPFSTFIFGKD-----TTQTWHFLG----LNSTQVVGILAVIWMILVTFVASKGINKIAKVTSIGGIAVMLLNIVL 175 (496)
T ss_pred HHHHHHHHHHHcCcc-----hhhhhhhhc----ccchHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHH
Confidence 22211 111111110 011110000 01111223456666678999999999999999999887775443222
Q ss_pred Hhh----hcccc----cccCCCCCC----CC--ChHHHHHHHHHHHHhhhhhHHHhhhhhhhcCCCCchhHHHHHHHHHH
Q 009714 188 IFA----GAFEV----DVSNWSPFA----PN--GFKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLIC 253 (528)
Q Consensus 188 ~i~----~~~~~----~~~~~~~~~----~~--~~~~~~~~~~~~~~~f~G~e~~~~~a~E~k~p~k~ip~ai~~s~~~~ 253 (528)
++. ..... ++.+++++. |. +..+++.++..+.|+|.|+|.+++++||+||||||+||++..+...+
T Consensus 176 ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~~~p~~~~p~ai~~~~~~~ 255 (496)
T PRK15238 176 LLVSIIILILNGGHFAQPIGVSSFVTSPNPAYQSPIAVLSFVVFAIFAYGGIEAVGGLVDKTENPEKNFPKGIIIAAIVI 255 (496)
T ss_pred HHHHHHHHHHcCCCccccccHhhcccCCCCccccchHHHHHHHHHHHHHHhHHHHHHHHHhccCCCccccHHHHHHHHHH
Confidence 211 11111 111111111 11 11357778888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccccccCCC-------CcHHHHHHHH-----------------cChhHHHHHHHHHHHHHHHHHHHH
Q 009714 254 AALYVGVSLVLTGMVPYKFLDE-------DAPLSDAFAS-----------------RGLKYVSVLISFGAVAGLTTTLLV 309 (528)
Q Consensus 254 ~i~y~l~~~~~~~~~~~~~~~~-------~~p~~~~~~~-----------------~~~~~~~~i~~~~~~~~~~~~~~~ 309 (528)
.++|++..+......|+++... +.|.. +.+. ..+++...++.+..+.+.+++.++
T Consensus 256 ~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 334 (496)
T PRK15238 256 SIGYSLAIFLWGVSTNWQQVLSNKSVNLGNITYV-LMNNLGYTLGHALGLSPAASLTLGVWFARITGLSMFLAYTGAFFT 334 (496)
T ss_pred HHHHHHHHHHHHhcCchhhcCCccccchhccHHH-HHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999888777777655422 12221 1111 123455557778889999999999
Q ss_pred HHHhHHHHHHHhhcCCCCchhhhhhcCCcccchHHHHHHHHHHHHHHHhh--C-------HHHHHHHHHHHHHHHHHHHH
Q 009714 310 GLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLF--N-------VRVLSHILSVGTLTGYSVVS 380 (528)
Q Consensus 310 ~~~~~sR~l~a~a~dg~lP~~~~~~n~r~~~P~~a~l~~~~i~~~~~~~~--~-------~~~l~~~~~~~~l~~y~~~~ 380 (528)
..++.+|.+++++|||.+||+|+|+| |+|+|++|++++.++..++.... . ++.+.++.++..++.|.+.+
T Consensus 335 ~~~~~~r~~~~~~~~g~~P~~f~k~n-k~g~P~~a~~~~~~i~~l~~~~~~~~~~~~~~~f~~l~~l~~~~~li~y~~~~ 413 (496)
T PRK15238 335 LSYSPLKQLIEGTPKALWPKKMTKLN-KNGMPANAMWLQCIIVSVFILLVSFGGDAASAFFNILTLMANVSMTLPYLFLA 413 (496)
T ss_pred HHHhhHHHHHhhCccCcccHHHHhhC-cCCCcHHHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999 89999999999988777554332 1 46788899999999999999
Q ss_pred HHHHhhhhcCCCCCCCcccc
Q 009714 381 ACVIALRWKDRTSRNDSSRL 400 (528)
Q Consensus 381 ~~~~~~r~~~~~~~~~~~~~ 400 (528)
.+++++|| +++.+|+++.+
T Consensus 414 ~a~i~~r~-~~~~~r~~~~~ 432 (496)
T PRK15238 414 GAFPFFKK-KKDIDRPFVVF 432 (496)
T ss_pred HHHHHHhh-ccCCCCCceec
Confidence 99999876 56666655543
No 37
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=99.96 E-value=5.3e-27 Score=240.48 Aligned_cols=320 Identities=13% Similarity=0.075 Sum_probs=249.9
Q ss_pred cCCCChHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCchhhhhHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009714 37 ATPVQVRVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVV 116 (528)
Q Consensus 37 ~~~~G~~~~l~~~l~~l~~~~~a~~~ael~~~~P~~~Gg~y~~~~~~~g~~~gf~~gw~~~l~~~~~~a~~~~~~~~~~~ 116 (528)
++.+++..++..+++++.+...+++++|+++++|+ +||.|+|+++.+||..|++.+|.+++.+......+....++++.
T Consensus 23 a~~g~~~~~~~~i~~~~~~~~~~l~~~el~~~~p~-~~~~~~~~~~~~G~~~g~~~~~~~~~~~~~~~~ay~~~~~~~l~ 101 (381)
T TIGR00837 23 AGAWFIWTLLLLILLWFLMLHSGLLLLEVYLTYPG-GASFNTIAKDLLGKTGNIIAGLSLLFVLYILTYAYISGGGSILS 101 (381)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCCHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHccHHHHH
Confidence 44455677778899999999999999999999998 99999999999999999999999999888888888888888887
Q ss_pred HHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 009714 117 SILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVD 196 (528)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ln~~g~~~~~~~~~i~~~~~i~~l~~~~i~~~~~~~ 196 (528)
.+++.. .....+ ..+..+++.+++..+|.+|.|..+++|++++..++..++++++.+..+.+
T Consensus 102 ~~~~~~--~~~~~~----------------~~~~~~~~~~v~~~l~~~G~~~~~~v~~i~~~~~l~~l~~~ii~~~~~~~ 163 (381)
T TIGR00837 102 RLIGEY--FGFPWS----------------ARAIVLIFTVLFGSFVWLSTSAVDRITRVLIFGKIIAFALVFSGLLPHVK 163 (381)
T ss_pred HHHHHh--cCCCcc----------------HHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 765421 111111 22356777788889999999999999999999999999998888888877
Q ss_pred ccCCCCCC--CCChHHHHHHHHHHHHhhhhhH-HHhhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhccccccC
Q 009714 197 VSNWSPFA--PNGFKEILTGATVVFFAYVGFD-AVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFL 273 (528)
Q Consensus 197 ~~~~~~~~--~~~~~~~~~~~~~~~~~f~G~e-~~~~~a~E~k~p~k~ip~ai~~s~~~~~i~y~l~~~~~~~~~~~~~~ 273 (528)
.+|+.+.. +.++.++..++...+++| |+| ..+...+|.||++|++||++..+..++.++|++......+..|++++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~a~~~~~~~f-g~~~~i~~~~~~~~~~~k~i~raii~g~~i~~~lY~l~~~~~~g~~~~~~l 242 (381)
T TIGR00837 164 GDLLLDVALDTSYWPYILSALPVCLTSF-GFHGNVPSLYKYYDGNVKKVKKSILIGSAIALVLYILWQLATMGNLPRSEF 242 (381)
T ss_pred HHHHhcCccccccHHHHHHHHHHHHHHH-HcccccHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHH
Confidence 77765432 235667888888888888 665 68888999987799999999999999999999999999999998876
Q ss_pred C-------CCcHHHHHHHH-cChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCCCCchhhhhhcCCcccchHHH
Q 009714 274 D-------EDAPLSDAFAS-RGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQ 345 (528)
Q Consensus 274 ~-------~~~p~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~~~~~n~r~~~P~~a~ 345 (528)
+ +.+++.++++. .+.++...++.+...++..++.++...+.++. +++.+++.|+|++ |..+.
T Consensus 243 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~---------l~~~~~~~~~~~~-~~~~~ 312 (381)
T TIGR00837 243 LPIIAKGGNLDGLVNALQGVLKSSAIELALELFSNFALASSFLGVTLGLFDY---------LADLFKFDDSKKG-RFKTG 312 (381)
T ss_pred HHHHHcCCChHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHhCCCcccCC-Cchhh
Confidence 3 22566677765 46677888999999999999999988877744 4444555443434 56777
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009714 346 VWVGIVAGILAGLFNVRVLSHILSVGTLTGYSVVSACVIAL 386 (528)
Q Consensus 346 l~~~~i~~~~~~~~~~~~l~~~~~~~~l~~y~~~~~~~~~~ 386 (528)
++..+...++..+.....+..+...+....+....+..+..
T Consensus 313 ~~~~~~pl~~a~~~p~~~~~~l~~~G~~~~~~~~~~p~l~~ 353 (381)
T TIGR00837 313 LLTFLPPLVFALFYPEGFLYAIGYAGLAATIWAVIIPALLA 353 (381)
T ss_pred hhhHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888878777777666666766666555544444444333
No 38
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=99.92 E-value=9.9e-24 Score=214.45 Aligned_cols=406 Identities=14% Similarity=0.189 Sum_probs=296.5
Q ss_pred ccccCCCCh-HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCchhhhhHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009714 34 PWLATPVQV-RVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLA 112 (528)
Q Consensus 34 ~~~~~~~G~-~~~l~~~l~~l~~~~~a~~~ael~~~~P~~~Gg~y~~~~~~~g~~~gf~~gw~~~l~~~~~~a~~~~~~~ 112 (528)
.|+++.+|. ...+..++++...++++.+++.++++--..+||.|..++|.+||..|-.+|.++.++...+.+.+..+..
T Consensus 138 tWvVG~AGv~q~fllv~iCC~cTmLTaISmSAIATNGVVpaGGsYfmISRsLGPEFGgAVGlcFYLgtT~AaaMYIlGaV 217 (1075)
T KOG2082|consen 138 TWVVGMAGVGQGFLLVFICCLCTMLTAISMSAIATNGVVPAGGSYFMISRSLGPEFGGAVGLCFYLGTTVAAAMYILGAV 217 (1075)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCeeEEEecccCccccceeeehhhhhhHHHHHHHHHhHH
Confidence 788999998 6777778899999999999999999654457999999999999999999999999999999999999998
Q ss_pred HHHHHH-HhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 009714 113 SYVVSI-LELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAG 191 (528)
Q Consensus 113 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ln~~g~~~~~~~~~i~~~~~i~~l~~~~i~~ 191 (528)
+.+... +.....++.... . .+.-+..-...+-+.+++++..++-..|+|...++..++..+.++.++...+.+
T Consensus 218 Ei~L~Yi~P~aaIf~~~~a--~----~~~~am~nnlRvYGT~~Li~m~lIVf~GVK~Vnk~A~vfL~CVILSIlaiyaG~ 291 (1075)
T KOG2082|consen 218 EIFLTYIFPAAAIFGAEDA--H----DEAAAMLNNLRVYGTVFLILMALIVFVGVKFVNKFAPVFLACVILSILAIYAGG 291 (1075)
T ss_pred HHHHHHHccHhhhcCcccc--c----cchhhhhcceehHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhh
Confidence 887663 221112221000 0 001111223446788889999999999999999999998888777666644332
Q ss_pred ccc------------------------------ccccC---------------------------CC-------------
Q 009714 192 AFE------------------------------VDVSN---------------------------WS------------- 201 (528)
Q Consensus 192 ~~~------------------------------~~~~~---------------------------~~------------- 201 (528)
+-. .|..| .+
T Consensus 292 i~~~~~~~~~~vC~lgnr~L~~~~~d~c~k~~~~~~~~~~~~L~~~fC~~~~~~~~c~~y~~~nnvt~i~GipG~a~g~~ 371 (1075)
T KOG2082|consen 292 IKSIFDPPGFPVCMLGNRLLSSSIFDNCSKTETVDNDNVTSFLWGLFCNSNNDSATCDEYFSKNNVTEIQGIPGLASGVF 371 (1075)
T ss_pred hhhccCCCCCeeEEecceeccccccccchhhhccccccHHHHHHHhhCCCCCCCcccccccccccceeecCCcchhhhhh
Confidence 110 00011 00
Q ss_pred ------C------CCCC--------C-----------hHHHHHHHHHHHHhhhhhHHHhhhhhhhcCCCCchhHHHHHHH
Q 009714 202 ------P------FAPN--------G-----------FKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSL 250 (528)
Q Consensus 202 ------~------~~~~--------~-----------~~~~~~~~~~~~~~f~G~e~~~~~a~E~k~p~k~ip~ai~~s~ 250 (528)
. +.+. + -..+..-+.+-+-+.+|.-+-++.+++.|||+|++|.+.+.++
T Consensus 372 ~eNlws~Ylekg~~v~~g~~~~~~~~~~~~~~V~~Di~tSFtlLvgIfFPsVTGImaGSNrSGDLkDaQkSIPvGTI~Ai 451 (1075)
T KOG2082|consen 372 KENLWSAYLEKGEIVEYGVPSADIADSSGHPYVVQDITTSFTLLVGIFFPSVTGIMAGSNRSGDLKDAQKSIPVGTIAAI 451 (1075)
T ss_pred hhhhhHhhhcccccccCCCCCCCcccccCCCceeecchhhHHHHHHhhccccceeeecCCCCccccchhhcCchhhhHHH
Confidence 0 0000 0 0123333445567889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccccccCCCCcHHHHHHHH-----cChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCC
Q 009714 251 LICAALYVGVSLVLTGMVPYKFLDEDAPLSDAFAS-----RGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDG 325 (528)
Q Consensus 251 ~~~~i~y~l~~~~~~~~~~~~~~~~~~p~~~~~~~-----~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg 325 (528)
+.+..+|+...+.+.++...-.+.+. +.+.... ....+-.+++.++.++|++++.+..+.+++|+|++.|||+
T Consensus 452 lTTS~vYlssv~lFGa~i~~~vLRDK--fG~sv~g~lVva~laWPsPwVi~IGsFlST~GAgLQsLtgAPRLLQAIAkD~ 529 (1075)
T KOG2082|consen 452 LTTSFVYLSSVVLFGACIEGVVLRDK--FGQSVGGNLVVATLAWPSPWVIVIGSFLSTCGAGLQSLTGAPRLLQAIAKDD 529 (1075)
T ss_pred HHHHHHHHHHHHHHHHhhcchhhhhh--hhhhccCcEEEEEecCCCceeeehhHHHHHhHHHHhhhcCcHHHHHHHhhcC
Confidence 99999999999999888763333221 1111110 0111235678899999999999999999999999999999
Q ss_pred CCc--hhhhhhcCCcccchHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccccccc
Q 009714 326 LLP--SIFAKVHPKRHTPVHSQVWVGIVAGILAGLFNVRVLSHILSVGTLTGYSVVSACVIALRWKDRTSRNDSSRLTSA 403 (528)
Q Consensus 326 ~lP--~~~~~~n~r~~~P~~a~l~~~~i~~~~~~~~~~~~l~~~~~~~~l~~y~~~~~~~~~~r~~~~~~~~~~~~~~~~ 403 (528)
.+| +.|+|.+ ++|-|.+|++++.+++...+++.+.+.+..+.++.++.+|..+.++.....--|...+|
T Consensus 530 IiPfL~~F~~~~-~ngEPt~aLlLT~~Ice~gILigslD~iApilsmFFLMCY~fVNLaCavqtLLrtPnWR-------- 600 (1075)
T KOG2082|consen 530 IIPFLAPFGHGK-ANGEPTWALLLTAIICECGILIGSLDLIAPILSMFFLMCYLFVNLACAVQTLLRTPNWR-------- 600 (1075)
T ss_pred ccchhhhhcccc-CCCCccHHHHHHHHHHHhhheeechhHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCC--------
Confidence 999 9999988 88999999999999999999999999999999999999999999988776644433322
Q ss_pred chhhHHHHHHHHHhhhhcchhhccchhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCccchhHHHHHHHHHHHHhcC
Q 009714 404 WRQGVICLIIIACCGFGAGLFYRINASYILLIVAVVIAVLASAMLCLRHGYSDPPGFSCPGVPLLPAVSIFFNLFLFAQL 483 (528)
Q Consensus 404 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~ 483 (528)
+.||... ..++.+++..|+++|+..
T Consensus 601 ------------------------------------------------------PRfkyyH-W~LSflG~sLC~~iMF~~ 625 (1075)
T KOG2082|consen 601 ------------------------------------------------------PRFKYYH-WSLSFLGASLCLAIMFIS 625 (1075)
T ss_pred ------------------------------------------------------ccchhhh-hHHHHHHHHHHHHHHHHH
Confidence 2233333 247778888888887765
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhcccccCCCCC
Q 009714 484 HYEAWWRFVILSFISIGLYAFYGQYHADPSSD 515 (528)
Q Consensus 484 ~~~~~~~~~~~~~~g~~~y~~~~~~~~~~~~~ 515 (528)
+ |....+-+.+..++|-+..+| ..+++.
T Consensus 626 S---WyyAlvAm~~a~~IYKYiEyk-GAeKEW 653 (1075)
T KOG2082|consen 626 S---WYYALVAMLIAGVIYKYIEYK-GAEKEW 653 (1075)
T ss_pred H---HHHHHHHHHHHHHHHHHHhhc-cccchh
Confidence 5 666666677888888744444 444443
No 39
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.89 E-value=2.6e-21 Score=195.63 Aligned_cols=349 Identities=17% Similarity=0.197 Sum_probs=267.8
Q ss_pred ccccCCCCh-HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCchhhhhHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009714 34 PWLATPVQV-RVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLA 112 (528)
Q Consensus 34 ~~~~~~~G~-~~~l~~~l~~l~~~~~a~~~ael~~~~P~~~Gg~y~~~~~~~g~~~gf~~gw~~~l~~~~~~a~~~~~~~ 112 (528)
|++.+.+|- -.++-++++..+.+++.++...++++--.+.||.|..++|.+||..|--.|..+.++.+..++.++.++.
T Consensus 91 gfIvG~aGll~Tll~lliaY~I~llTvlSicAIsTNGaV~GGGaYymISRsLGpEfGGSIGllFf~anV~~~am~isG~v 170 (945)
T KOG1288|consen 91 GFIVGQAGLLKTLLMLLIAYAILLLTVLSICAISTNGAVRGGGAYYMISRSLGPEFGGSIGLLFFVANVFNCAMNISGFV 170 (945)
T ss_pred hhhhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCceecCceEEEEEcccCcccCCeeeehhhHHHHhcchhhhhhhh
Confidence 788999998 6777788888888999999999999877678999999999999999999999999999999999999988
Q ss_pred HHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 009714 113 SYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGA 192 (528)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ln~~g~~~~~~~~~i~~~~~i~~l~~~~i~~~ 192 (528)
+-+.+.++.-. .+.+ +.+..+.+.+...+-+..+..+...+.+.|...++|..++..+...+.+....+..+
T Consensus 171 E~il~nfG~~a-~g~s-------g~~~lP~g~ww~fly~t~vl~l~~~vc~lGsalfAkas~i~f~~is~s~~si~iS~i 242 (945)
T KOG1288|consen 171 EPILDNFGKEA-QGAS-------GSQFLPDGYWWRFLYTTLVLALCLIVCLLGSALFAKASNILFVVISVSLFSIPISFI 242 (945)
T ss_pred HHHHHhcCccc-cCCc-------ccccCCCCcchhhHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHHHHHhhhhheeE
Confidence 88777654110 0101 111223344555667777888888888999999999888876655444444333322
Q ss_pred cccccc------------------CCCC-----------------CCCCChHHHHHHHHHHHHhhhhhHHHhhhhhhhcC
Q 009714 193 FEVDVS------------------NWSP-----------------FAPNGFKEILTGATVVFFAYVGFDAVANSAEESKK 237 (528)
Q Consensus 193 ~~~~~~------------------~~~~-----------------~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~k~ 237 (528)
+....+ ++++ ....+...+-..+...+-+-+|.-+.++|++|.|+
T Consensus 243 fvgp~~~~ip~~~~p~~sn~t~~~~yTG~~~sTl~dNL~~~yt~dyt~~~~~~F~~~FgV~F~g~tGimAGAnMSgELk~ 322 (945)
T KOG1288|consen 243 FVGPFKDPIPVPGDPILSNTTLFVHYTGLSWSTLMDNLGSHYTEDYTGGGYEDFASTFGVFFPGTTGIMAGANMSGELKA 322 (945)
T ss_pred EeccccCCCCCCCCccccCcceeeeecCccHHHHhhhhhhhhcccccCCCceehhhhheeeeccchhhhcCCCcCccccC
Confidence 211000 0111 11112334666677777888999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCcHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 009714 238 PQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRL 317 (528)
Q Consensus 238 p~k~ip~ai~~s~~~~~i~y~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~ 317 (528)
|.|.+||+.+.++..+.+.|+++.+......|+..+..+.. ++.... ....++.++.+.+.+.+..+.+.++||+
T Consensus 323 PSkSIP~GTl~ava~Tf~~Yvl~~flm~~t~~r~~Lq~dy~---v~~~is--l~p~fi~iGi~sttlfss~s~liGasrv 397 (945)
T KOG1288|consen 323 PSKSIPKGTLSAVAFTFFVYVLVIFLMGCTVPRTLLQNDYD---VMMHIS--LHPPFILIGILSTTLFSSMSGLIGASRV 397 (945)
T ss_pred ccccCCccchHHHHHHHHHHHHHHHHhccCcchHHhhhchh---heeecc--ccchHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 99999999999999999999999999988888766655432 122221 1234555666777777778889999999
Q ss_pred HHHhhcCCCCc--hhhhhhcCCcccchHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCC
Q 009714 318 YLGLGRDGLLP--SIFAKVHPKRHTPVHSQVWVGIVAGILAGLFNVRVLSHILSVGTLTGYSVVSACVIALRWKDRTSRN 395 (528)
Q Consensus 318 l~a~a~dg~lP--~~~~~~n~r~~~P~~a~l~~~~i~~~~~~~~~~~~l~~~~~~~~l~~y~~~~~~~~~~r~~~~~~~~ 395 (528)
|.++|||+..| -.++|...+.+.|+.|+.++..++-+..+.++++.+..+.++..+++|..+.++.+.++.......|
T Consensus 398 L~alakD~lfg~ll~fak~~s~~~nP~~av~vtw~lvqlvll~g~~N~iA~~it~~FLlty~~vNLacl~LeissAPNFR 477 (945)
T KOG1288|consen 398 LEALAKDDLFGGLLFFAKGSSYDGNPYVAVGVTWLLVQLVLLWGDINKIASMITMTFLLTYGAVNLACLLLEISSAPNFR 477 (945)
T ss_pred HHHHhhcccchhhheeeeccccCCCceeeeeHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCC
Confidence 99999999999 6778887788999999999999999888889999999999999999999999999999876544333
No 40
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=99.88 E-value=1.4e-19 Score=184.18 Aligned_cols=261 Identities=16% Similarity=0.197 Sum_probs=213.7
Q ss_pred cccCCCChHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCchhhhhHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009714 35 WLATPVQVRVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASY 114 (528)
Q Consensus 35 ~~~~~~G~~~~l~~~l~~l~~~~~a~~~ael~~~~P~~~Gg~y~~~~~~~g~~~gf~~gw~~~l~~~~~~a~~~~~~~~~ 114 (528)
.+++.+|++++++++++++.+++.+++++|+++++|+ . +.++|.++.+||..|+..+|.+++......+......+++
T Consensus 27 ~~~~~a~~~~wi~~ll~~~~~~~~~~~~~~l~~~~p~-~-~~~~~~~~~~Gk~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (359)
T TIGR00912 27 LVSQSAGQDGWISIILGGLIIIFLLCLMIKIMSKFPE-K-NFSEILSKYLGKILGRLLSILFILYFFLIAAYLIRIFADF 104 (359)
T ss_pred HHHhccCCCeeHHHHHHHHHHHHHHHHHHHHHHHCCC-C-CHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667789999999999999999999999999999998 5 6999999999999999999999887777776777666776
Q ss_pred HHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH-HHHHHhhhcc
Q 009714 115 VVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTVVKVII-VIVVIFAGAF 193 (528)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ln~~g~~~~~~~~~i~~~~~i~~-l~~~~i~~~~ 193 (528)
+.... . ++.|.+ .+.+.++++....+..|.+..+|++.+...+++.. ++++......
T Consensus 105 ~~~~~--l----~~tp~~----------------~~~l~~l~~~~~~~~~Gi~~i~r~~~i~~~~~i~~~~~il~~~~~~ 162 (359)
T TIGR00912 105 IKTYL--L----PRTPII----------------VIIILIIIVSIYIVRKGIEVLLRTAEILLIIFLILFILVLILLAPK 162 (359)
T ss_pred HHHHh--c----CCCCHH----------------HHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 65432 1 122322 36777788888999999999999999999888777 3444444445
Q ss_pred cccccCCCCCCCCChHHHHHHHH-HHHHhhhhhHHHhhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 009714 194 EVDVSNWSPFAPNGFKEILTGAT-VVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKF 272 (528)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~f~G~e~~~~~a~E~k~p~k~ip~ai~~s~~~~~i~y~l~~~~~~~~~~~~~ 272 (528)
..|.+|..|..++|+.+.+.+.. ...++|.|+|......+|.||| |+.||++..+..+++++|.+......+..|+++
T Consensus 163 ~~~~~~l~P~~~~g~~~~~~~~~~~~~~~f~g~~i~~~~~~~~~~~-~~~~k~~~~~~~~~~~ly~~~~~~~i~~lg~~~ 241 (359)
T TIGR00912 163 LGNIKNLLPVLENGLSPILKGAYPVVTFAFGEIEIFFLLFPLLSKK-KKIKKSIIKAIIIGVLLYILTTFVSISVFGGNV 241 (359)
T ss_pred cccHHHccCccccCcHHHHhhhhHHhhhhhHHHHHHHHHHHHhCCh-hhhHHHHHHHHHHHHHHHHHHHHHHHheecHHH
Confidence 56788888888889888888887 8899999999999999999996 679999999999999999999999999999887
Q ss_pred CCC-CcHHHHHHHHcChh----HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 009714 273 LDE-DAPLSDAFASRGLK----YVSVLISFGAVAGLTTTLLVGLYVQSRLYLG 320 (528)
Q Consensus 273 ~~~-~~p~~~~~~~~~~~----~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~a 320 (528)
.+. ..|..+..+....+ -...++....+.+.+......++..++.+..
T Consensus 242 ~~~~~~P~~~~~~~i~~~~f~eR~e~~~~~~w~~~~f~~~~~~~~~~~~~~~~ 294 (359)
T TIGR00912 242 TKNLYWPTLELIKLINIGDFIERFELIVMTFWVFIIFVKIAFYLYIAVKGLSK 294 (359)
T ss_pred hhhhcccHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 754 67888888887544 2445666677777777777777888876643
No 41
>PHA02764 hypothetical protein; Provisional
Probab=99.83 E-value=6.9e-19 Score=163.87 Aligned_cols=273 Identities=18% Similarity=0.220 Sum_probs=173.3
Q ss_pred ccccCCCcCccccccccccccccccccCcccc-------cCCCChHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCchh
Q 009714 5 DFYGGSDSSNWCSSASARLLAPEYSLSPVPWL-------ATPVQVRVTISFLLAGAASVLNALCYAELASRFPAVVGGAY 77 (528)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~G~~~~l~~~l~~l~~~~~a~~~ael~~~~P~~~Gg~y 77 (528)
+|-|+|++.-+..+.-.+.+.-...+..+... ....|+..+++|+++++++++.+++|+|+++++|+ +||.|
T Consensus 2 ~FvReSSGLVREvs~lDAF~~Nl~~m~~Gi~Is~~~l~a~l~pG~nlLLAWLLGGLlALPgAL~YAELGSAmPr-AGGdY 80 (399)
T PHA02764 2 EFERKSSGIIKSFNILDIFSINLLYMGILSGISYPLFVSSLLKNVNLLFAILIGAVFEIPLLLMYYKLTTKFPL-NGGDY 80 (399)
T ss_pred ccchhcCCceeeccHHHHHHHHHHhhccchhHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhCCC-CCceE
Confidence 47788888777766666555444444433211 13457789999999999999999999999999999 99999
Q ss_pred hhhHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHH-H-HHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHH
Q 009714 78 LYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLA-S-YVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILL 155 (528)
Q Consensus 78 ~~~~~~~g~~~gf~~gw~~~l~~~~~~a~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 155 (528)
+|.+|++||..|+..||..|+.+..+.+..+-... + .++..++++ -.......+
T Consensus 81 VYISRAFGP~~GFLvG~a~WLtl~~G~Pal~~l~~~~~~i~~~~~~f------------------------~~~~s~~~i 136 (399)
T PHA02764 81 AYIRTAFSSKFYTIFGISLWLTYVLSQPILGDLVLLNFNIQNQFEQF------------------------LIVESLFPI 136 (399)
T ss_pred EEhHHhhCccHHHHHHHHHHHHHHhhcchhhheeeeeeeeHHHHHHH------------------------HHHHHHHHH
Confidence 99999999999999999999998776554442111 0 001111100 001122222
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccc--cccCCCCCCCCChHHHHHHHHHHHHhhhhhHHHhhhhh
Q 009714 156 ALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEV--DVSNWSPFAPNGFKEILTGATVVFFAYVGFDAVANSAE 233 (528)
Q Consensus 156 ~~~~~ln~~g~~~~~~~~~i~~~~~i~~l~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~ 233 (528)
..+-..|.|..+|.-.++.....+ ..+....... ...|++ .++ ....+...-.-.|.=.|+..+.++
T Consensus 137 ---~~~i~~~~~~~~~~v~il~~a~~i---~aif~~~~s~n~~~~~f~--~sn---t~~~a~~~~l~~~~fi~a~~y~~~ 205 (399)
T PHA02764 137 ---VLLIIANKKIYAKIVDILAIAQII---IAIFIAFKSFNFQYQNFT--ISN---TLLSALLFDLSAFIFINAISYIAG 205 (399)
T ss_pred ---HHHHHcccHHHHHHHHHHHHHHHH---HHHHhhccceeEEEccee--ehH---HHHHHHHHHHHHHHHhccHHHHHH
Confidence 223334577777776665554444 1111122221 122221 112 234444444455566799999999
Q ss_pred hhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCcHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHh
Q 009714 234 ESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYV 313 (528)
Q Consensus 234 E~k~p~k~ip~ai~~s~~~~~i~y~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 313 (528)
|.||-+|....+...+...+.++-+..+. .+ + .+.-+......++-+....--
T Consensus 206 ei~n~~k~~~~gyf~s~~~~~~~~ii~sy--------~n------~-------------~il~~~~~~w~~~y~~~~~~~ 258 (399)
T PHA02764 206 EIKNIKKSSMIGYFVSYGIVAILSIIDSY--------SN------L-------------NILFALMPIWFFSYMPIANKI 258 (399)
T ss_pred HhhcchhhhhhhhHHHHHHHHHHHHHHhh--------hh------H-------------HHHHHHHHHHHHhheeeecch
Confidence 99999999998888888877766444431 00 0 011112333444444444456
Q ss_pred HHHHHHHhhcCCCCchhhhhhcCCcccch
Q 009714 314 QSRLYLGLGRDGLLPSIFAKVHPKRHTPV 342 (528)
Q Consensus 314 ~sR~l~a~a~dg~lP~~~~~~n~r~~~P~ 342 (528)
.||++++||.|+.+|+.|+|.|| ++|.
T Consensus 259 ~srli~~~~fd~~lpe~f~k~~~--nv~~ 285 (399)
T PHA02764 259 QSRLIQTMSFDKVLPEKFSKINP--NVLL 285 (399)
T ss_pred HHHHHHHHHhhhhchHHHhccCC--Ccee
Confidence 79999999999999999999984 7886
No 42
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=99.82 E-value=3.2e-17 Score=164.29 Aligned_cols=322 Identities=16% Similarity=0.112 Sum_probs=239.2
Q ss_pred ccCCCCh---HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCchhhhhHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009714 36 LATPVQV---RVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLA 112 (528)
Q Consensus 36 ~~~~~G~---~~~l~~~l~~l~~~~~a~~~ael~~~~P~~~Gg~y~~~~~~~g~~~gf~~gw~~~l~~~~~~a~~~~~~~ 112 (528)
+.+.+|. .+.++|+++++..-..+++ +.|+ +||.|++.++..||..|++.+|..++..-...+.-=.+..
T Consensus 20 lG~~aG~~~~~a~lgf~ltgV~lpllgl~------av~~-~gG~~~~l~~~~g~~f~~lf~~~~~l~iGP~~aiPRtaa~ 92 (378)
T TIGR00796 20 LGLAAGEHVWTAALGFLLTGVGLPLLGLI------ALAL-VGGGYDSLSARIGKVFGILFTVILYLTIGPLFAIPRTATV 92 (378)
T ss_pred HHHHhCccHHHHHHHHHHHHHHHHHHHHh------eeee-cCCCHHHHHHHhChHHHHHHHHHHHHHHHhchhhhHHHHH
Confidence 4444554 4677999999998888877 7888 9999999999999999999999877665433222111222
Q ss_pred HHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 009714 113 SYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGA 192 (528)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ln~~g~~~~~~~~~i~~~~~i~~l~~~~i~~~ 192 (528)
.|-..+. |.++... +.....+.++++..+...+|+++.|...+++++++.++++.++.+++.++
T Consensus 93 s~e~~i~---p~~~~~~-------------~~~~l~i~siiff~i~~~l~~~~~k~~~~iGk~LTP~lLi~l~~lii~g~ 156 (378)
T TIGR00796 93 SFEMGIA---PLLHSPT-------------SLLALFIFSLIFFAVVLLLSLNPSKLIDRVGKFLTPALLVTLLALIIKAL 156 (378)
T ss_pred HHHHHHH---hccCccc-------------chHHHHHHHHHHHHHHHHHHcCcccHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 2221121 2111100 01223346667777777899999999999999999999999999999998
Q ss_pred ccccccCCCCCCCCCh-HHHHHHHHHHHHhhh-------hhHHHhhhhh-hhcCCCCchhHHHHHHH-HHHHHHHHHHHH
Q 009714 193 FEVDVSNWSPFAPNGF-KEILTGATVVFFAYV-------GFDAVANSAE-ESKKPQRDLPIGILGSL-LICAALYVGVSL 262 (528)
Q Consensus 193 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~f~-------G~e~~~~~a~-E~k~p~k~ip~ai~~s~-~~~~i~y~l~~~ 262 (528)
.+...+...+..+..- ..+..++.-..+++. |+-.+....+ |.|||+|+.|+.+..++ ..+.+.|+...+
T Consensus 157 ~~p~g~~~~~~~~~~~~~~f~~g~l~GY~TmD~laal~fg~iiv~~i~~~g~~~~~~~~~~~i~~G~ia~i~l~~vY~~L 236 (378)
T TIGR00796 157 LWPAGPILAASGAYASQQAFSKGFLEGYLTMDALAALVFGIIVVNAIRSRGVTKPKKITKYTIKAGLIAAVLLAFIYLSL 236 (378)
T ss_pred HcCCCCcCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7643222111111111 357888888889998 9988888888 99999999999999999 667777888888
Q ss_pred HHHhccccccCC----CCcHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCCCCchhhhhhcCCc
Q 009714 263 VLTGMVPYKFLD----EDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKR 338 (528)
Q Consensus 263 ~~~~~~~~~~~~----~~~p~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~~~~~n~r~ 338 (528)
+..+..+.++.+ ..+.+.++.+...|+....++.+...++++++.++...+.++ .|+|.++|
T Consensus 237 ~~lGa~~~~~~~~~~~~~~~l~~~a~~~~G~~G~~ll~i~v~lACLtT~iGli~~~a~-------------~f~~~~~k- 302 (378)
T TIGR00796 237 FYLGATSAAAAGDAVNGAQILSAYSQHLFGSLGSFLLGLIITLACLTTAVGLTTACSE-------------YFHKLVPK- 302 (378)
T ss_pred HHHhcCcHhhhcccCCcHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHhcCC-
Confidence 888887765443 345777888888999999999999999999999999887554 66777654
Q ss_pred ccchHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHh--hhhcCCCCCC
Q 009714 339 HTPVHSQVWVGIVAGILAGLFNVRVLSHILSVGTLTGYSVVSACVIA--LRWKDRTSRN 395 (528)
Q Consensus 339 ~~P~~a~l~~~~i~~~~~~~~~~~~l~~~~~~~~l~~y~~~~~~~~~--~r~~~~~~~~ 395 (528)
+|+.+.++...+...+....+++.+.++..-...+.|-+.....+. +|++.|+.++
T Consensus 303 -~~y~~~v~~~~l~s~~ia~~Gl~~Ii~~~~PvL~~~YP~~i~lill~ll~~~~~~~~~ 360 (378)
T TIGR00796 303 -LSYKTWVIVFTLFSFIVANLGLTQIISISIPVLMIIYPLAIVLILLSFLRKLWDSKRA 360 (378)
T ss_pred -CCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 9999999888888888888899999998877777777776666666 6776666443
No 43
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism]
Probab=99.79 E-value=4.1e-18 Score=171.62 Aligned_cols=340 Identities=17% Similarity=0.222 Sum_probs=268.0
Q ss_pred cccccCCCCh-HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCchhhhhHHHhchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 009714 33 VPWLATPVQV-RVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSL 111 (528)
Q Consensus 33 ~~~~~~~~G~-~~~l~~~l~~l~~~~~a~~~ael~~~~P~~~Gg~y~~~~~~~g~~~gf~~gw~~~l~~~~~~a~~~~~~ 111 (528)
.+|+.+.||. ..++...++..++.+++++-.-++++-..|+||.|..++|.+|+..|--.|..|.++...+.+.+..++
T Consensus 53 l~wivgqagi~~~~~ii~~~~~vt~it~lSa~~I~t~~~vk~Gg~yflis~slg~efggsigiIy~f~~aVa~am~~vgf 132 (643)
T KOG2083|consen 53 LGWIVGQAGIGNSVLIIGLTTVVTLITVLSAIAIVTRGQVKSGGVYFLISRSLGPEFGGSIGIIYAFANAVATAMYVVGF 132 (643)
T ss_pred hhheeecchhhhhHHHHHHHHHHHHHHHHhHheeeecceeccCcEEEEEEecccccccchhHHHHHHHHHHHHHHhhhhH
Confidence 3899999998 788888889999999999999999988888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 009714 112 ASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAG 191 (528)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ln~~g~~~~~~~~~i~~~~~i~~l~~~~i~~ 191 (528)
++.+..+++.. ..+...+ ++.+..++...+|..|.++..|.|.++..+.++.+.-+++..
T Consensus 133 aEsv~~l~~~~-------s~~~i~g-------------i~~vt~~ill~i~~ag~~w~~k~q~~ll~il~iai~~f~~gs 192 (643)
T KOG2083|consen 133 AESVAHLFETE-------SKEMIDG-------------IGSVTVLILLAINVAGVEWEAKLQIVLLLILLIAIADFLVGS 192 (643)
T ss_pred HHHHHHHHHhc-------cHHHhcc-------------hhHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhhhhh
Confidence 99999887632 1122111 788888999999999999999999999988888887777765
Q ss_pred ccccc--------------ccCCC-CCCCCChHHHHHHHHHHHHhhhhhHHHhhhhhhhcCCCCchhHHHHHHHHHHHHH
Q 009714 192 AFEVD--------------VSNWS-PFAPNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAAL 256 (528)
Q Consensus 192 ~~~~~--------------~~~~~-~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~k~p~k~ip~ai~~s~~~~~i~ 256 (528)
+...+ .+|.. .+. ++ ..++..+...+-+.+|.-+-.+++++.|+|++++|++...++.....+
T Consensus 193 ~~~~~~~~~g~~~~~a~~~~~n~~~~~~-~~-~tfF~vf~vfFpaatgilaG~nisGdL~~Pq~~IP~GaL~Ai~vst~~ 270 (643)
T KOG2083|consen 193 FFSPNEFSSGFFGYRADIFVENLNPDID-PG-YTFFSVFAVFFPAATGILAGANISGDLKDPQKAIPLGALLAIGVSTLL 270 (643)
T ss_pred ccChhhhcccccccchhhcccCCCCCcC-CC-CceEeeeeeecchhhhhhccccccCCCCCchhhcccchhhhhhhhhhh
Confidence 55322 01111 111 12 256666677788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccccccCCC-----Cc----HHHHHHHHcC-hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCCC
Q 009714 257 YVGVSLVLTGMVPYKFLDE-----DA----PLSDAFASRG-LKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGL 326 (528)
Q Consensus 257 y~l~~~~~~~~~~~~~~~~-----~~----p~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~ 326 (528)
|.....-.....-.+.... +. .+.+-++... .......+..+...+..++..+.+.++.++++++.+|+.
T Consensus 271 yl~~i~~~Ga~~~r~~~~~~~~~~~~~c~~gl~~~~qv~smvS~~~Pl~~AGi~~a~LSsalsslVsap~V~QaL~kd~~ 350 (643)
T KOG2083|consen 271 YLIFIADLGATPVRDALENWNDTSTKSCPIGLTNYLQVMSMVSTFGPLITAGILAAELSSALSSLVSAPKVLQALCKDSL 350 (643)
T ss_pred hhhhhhhcccHHHHHHhccchhhccCCCccchHHHHHHHHhHhhcccchhhHHHHHHHHHHHHHHHhhhHHHHHHHhcCC
Confidence 9887776655443332210 11 2222222211 111223455666777777788899999999999999999
Q ss_pred Cc--hhhhhhcCCcccchHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCC
Q 009714 327 LP--SIFAKVHPKRHTPVHSQVWVGIVAGILAGLFNVRVLSHILSVGTLTGYSVVSACVIALRWKDRTSR 394 (528)
Q Consensus 327 lP--~~~~~~n~r~~~P~~a~l~~~~i~~~~~~~~~~~~l~~~~~~~~l~~y~~~~~~~~~~r~~~~~~~ 394 (528)
-| .+++|-.++++.|.++..++...+.......+.+.+..+.+...+.+|.....+.+.-+...++.+
T Consensus 351 yp~i~~f~KgyGkn~~Plrg~~l~~~~av~fi~igeln~iapiis~FfL~syAlinf~~f~aSl~~s~~w 420 (643)
T KOG2083|consen 351 YPSILFFAKGYGKNKEPLRGYLLTFLTAVSFIAIGELNIIAPIISNFFLLSYALINFSCFHASLAISEGW 420 (643)
T ss_pred CccHHHHHccCCccccchHHHHHHHHhHheeEEecccceeccchhhhhhhhhhccchhhhhhhhcccccc
Confidence 99 788898889999999999999998888888899999999999999999999888876666665544
No 44
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=99.72 E-value=1.3e-14 Score=147.51 Aligned_cols=265 Identities=12% Similarity=0.039 Sum_probs=210.3
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHH------HhccCCCCCCchhhhhHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009714 40 VQVRVTISFLLAGAASVLNALCYAE------LASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLAS 113 (528)
Q Consensus 40 ~G~~~~l~~~l~~l~~~~~a~~~ae------l~~~~P~~~Gg~y~~~~~~~g~~~gf~~gw~~~l~~~~~~a~~~~~~~~ 113 (528)
+|.+.+++++++++++++.++.++. +.+..| +.+.++++++.+||.+|.+.++.|++........++....+
T Consensus 28 ag~~G~i~~li~~l~~~pl~~~~~~ll~~~~l~~~~p--~~~i~~~~~~~fGk~~G~ii~~lY~~~~~~i~~aY~~~~~~ 105 (397)
T TIGR00814 28 AGLGGLWVLVLMAIIAYPLTYFGHRALARFLLSSKNP--CEDITEVVEEHFGKNWGILITLLYFFAIYPILLIYSVAITN 105 (397)
T ss_pred HHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--CCCHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677799999999988888777766 566666 48999999999999999999999999998888888888888
Q ss_pred HHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 009714 114 YVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAF 193 (528)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ln~~g~~~~~~~~~i~~~~~i~~l~~~~i~~~~ 193 (528)
.+..+.... ...+.+ ...+.++.++++...++..|.|...|++.++...+++.++.+.+...+
T Consensus 106 ~~~~fl~~~--~~~~~p---------------~~~i~~lilv~il~~iv~~G~~~i~r~~~il~~~~ii~l~~l~~~lip 168 (397)
T TIGR00814 106 DSASFLVNQ--LGTAPP---------------LRGLLSLALILILVAIMSFGEKLLFKIMGPLVFPLVLILVLLSLYLIP 168 (397)
T ss_pred HHHHHHHHh--cCCCCc---------------HHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777765421 111111 122467777788889999999999999999999999999998888888
Q ss_pred cccccCCCCC--CCCChHHHHHHHHHHHHhhhhhHHHhhhh----hhhcCC---CCchhHHHHHHHHHHHHHHHHHHHHH
Q 009714 194 EVDVSNWSPF--APNGFKEILTGATVVFFAYVGFDAVANSA----EESKKP---QRDLPIGILGSLLICAALYVGVSLVL 264 (528)
Q Consensus 194 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~f~G~e~~~~~a----~E~k~p---~k~ip~ai~~s~~~~~i~y~l~~~~~ 264 (528)
+.|.+|.... ..+.+..++.++...+|+|.|+|.++.++ ||.+|| +|+..|++..+..+..++|+...+.+
T Consensus 169 ~~~~~~L~~~p~~~~~~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~~k~i~~~~~i~~~~y~~~~~s~ 248 (397)
T TIGR00814 169 HWNGANLTTFPSFNGFLKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERKCLRIMKGASLILVATVMFFVFSC 248 (397)
T ss_pred HcCHHHHhcCCcccchHHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888877532 22346789999999999999999999999 777755 58889999999999999999999999
Q ss_pred HhccccccCC----CC-cHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhc
Q 009714 265 TGMVPYKFLD----ED-APLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGR 323 (528)
Q Consensus 265 ~~~~~~~~~~----~~-~p~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~a~a~ 323 (528)
.+..++|+.. ++ +.+....+....+....+..+...++...+..+...+....+..+-+
T Consensus 249 ~~~l~~~~~~~a~~~nis~Ls~l~~~~~~~~i~~~~~~f~~~Ai~tSFlG~~lg~~e~l~~l~~ 312 (397)
T TIGR00814 249 VLSLSPAEAVAAKEQNISILSYLANHFNAAWISYAGPIVAIVAISKSFFGHYLGAREGLNGIVL 312 (397)
T ss_pred hccCCHHHHHHHHHcCcHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 9999887752 22 22333344567777777788888888888888888887777777664
No 45
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=99.68 E-value=1.9e-13 Score=139.30 Aligned_cols=273 Identities=15% Similarity=0.135 Sum_probs=222.5
Q ss_pred cccCcccccCCCCh-HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCchhhhhHHHhchhHHHHHHHHHHHHHHHHHHHH
Q 009714 29 SLSPVPWLATPVQV-RVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASI 107 (528)
Q Consensus 29 ~~~~~~~~~~~~G~-~~~l~~~l~~l~~~~~a~~~ael~~~~P~~~Gg~y~~~~~~~g~~~gf~~gw~~~l~~~~~~a~~ 107 (528)
.+-..|.....+|- ...+..+++..++...++.++|.+.+.|+ ..+.-..++|.+||.++++.+..|.+........+
T Consensus 20 GmLaLP~~~~~~Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~~~~-~~~~~~~a~~~lG~~g~~~~~~~~~~~~y~ll~AY 98 (394)
T PF03222_consen 20 GMLALPIATAGAGFLPSLILLLIAWPLMYYSGLLLAEVSLNTPE-GSSLTSMAEKYLGKKGGIVIGISYLFLLYALLVAY 98 (394)
T ss_pred HHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCCHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence 34445766777775 78888888999999999999999999998 88999999999999999999999888887888888
Q ss_pred HHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 009714 108 ARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVV 187 (528)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ln~~g~~~~~~~~~i~~~~~i~~l~~~ 187 (528)
....++.+..+++... +.+.+ .....+.+.+++..+-..|.|...|+++.+...+++.++.+
T Consensus 99 isg~g~~~~~~l~~~~--~~~~~----------------~~~~~~~f~~i~~~iv~~g~~~v~~~n~~lv~~~i~~~~~l 160 (394)
T PF03222_consen 99 ISGGGSILSSLLGNQL--GTDLS----------------PWLSSLLFTIIFGGIVYFGTKAVDRINRVLVFGMIISFIIL 160 (394)
T ss_pred HHccHHHHHHHHHHhc--CCCCc----------------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888776321 11122 22356667777777888999999999999999999999999
Q ss_pred HhhhcccccccCCCCC--CCCChHHHHHHHHHHHHhhhhhHHHhhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 009714 188 IFAGAFEVDVSNWSPF--APNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLT 265 (528)
Q Consensus 188 ~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~k~p~k~ip~ai~~s~~~~~i~y~l~~~~~~ 265 (528)
++...++.|.++.... .+.++...+.++...+++|.-...++.+.+..++-+|++.|++..+..+..++|++-...+.
T Consensus 161 ~~~~~p~~~~~~L~~~~~~~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~d~~k~~~ai~~Gs~i~lv~yl~w~~~~l 240 (394)
T PF03222_consen 161 VVYLIPHWNPSNLLDAPPSPSDWSYILPALPVLVFSFGFHNIVPSLVKYLGGDPKKIRKAIIIGSLIPLVMYLLWVFSIL 240 (394)
T ss_pred HHHHhhhcCHHHhhccccccccHHHHHHHHHHHHHHHHHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998888776542 23567788999999999999999999999999977899999999999999999999999999
Q ss_pred hccccccCC----CC---cHHHHHHHH-cChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 009714 266 GMVPYKFLD----ED---APLSDAFAS-RGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLG 320 (528)
Q Consensus 266 ~~~~~~~~~----~~---~p~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~a 320 (528)
+.+|.++.. .+ +++....+. ..+++...+..+..+++..++..+...+..+.+..
T Consensus 241 g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d 303 (394)
T PF03222_consen 241 GSLPREQFAEAIAQGGNVSALVSALANVSGSPWISILGSIFAFFAIATSFLGVYLGLFDFLAD 303 (394)
T ss_pred hcCCHHHHHHHHhcCCChHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999887542 22 344445544 46677888888888999888888888887777654
No 46
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=99.58 E-value=6.9e-12 Score=127.38 Aligned_cols=331 Identities=15% Similarity=0.053 Sum_probs=235.9
Q ss_pred cccCcccccCCCCh-HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCchhhhhHHHhchhHHHHHHHHHHHHHHHHHHHH
Q 009714 29 SLSPVPWLATPVQV-RVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASI 107 (528)
Q Consensus 29 ~~~~~~~~~~~~G~-~~~l~~~l~~l~~~~~a~~~ael~~~~P~~~Gg~y~~~~~~~g~~~gf~~gw~~~l~~~~~~a~~ 107 (528)
.+-..|.....+|. ...+..+++..++...++.++|.+...|+ +-+.-..+++.+||..+++.+..|.+........+
T Consensus 20 GmLaLPi~~~~~Gf~~~~~~li~~w~~m~~t~l~l~Ev~~~~~~-~~~~~~~a~~~LG~~g~~i~~~~y~fl~y~ll~AY 98 (403)
T PRK15132 20 GMLAMPLAAAGVGFSVTLILLIGLWALMCYTALLLLEVYQHVPA-DTGLGTLAKRYLGRYGQWLTGFSMMFLMYALTAAY 98 (403)
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC-CCCHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence 34445666777776 66777777888888899999999888887 78899999999999999999999988877777888
Q ss_pred HHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 009714 108 ARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVV 187 (528)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ln~~g~~~~~~~~~i~~~~~i~~l~~~ 187 (528)
..+.++.+.+.++.+ .+.+.+.+ ...+.+.++...+-+.|.|...|+++++...+++.++..
T Consensus 99 isg~g~il~~~l~~~--~~~~i~~~----------------~~~l~F~~~~~~iv~~g~~~v~~~n~~L~~~~ii~~~~~ 160 (403)
T PRK15132 99 ISGAGELLASSISDW--TGISMSPT----------------AGVLLFTLVAGGVVCVGTSSVDLFNRFLFSAKIIFLVVM 160 (403)
T ss_pred HhCcHHHHHHHHHHh--ccCCCChH----------------HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 888777776665421 11122221 255666666666888899999999999999999988888
Q ss_pred HhhhcccccccCCCCCCCCChHHHHHHHHHHHHhhhhhHHHhhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhc
Q 009714 188 IFAGAFEVDVSNWSPFAPNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGM 267 (528)
Q Consensus 188 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~k~p~k~ip~ai~~s~~~~~i~y~l~~~~~~~~ 267 (528)
.....++.+.+|.... |.+....+.+++..+++|.=...++.+....++-+|++.|++..+..+..++|++-...+.+.
T Consensus 161 ~~~l~p~~~~~~L~~~-~~~~~~~~~~iPvl~~SFgfh~iIpsl~~y~~~~~~~~~k~i~~Gs~i~li~yl~W~~~~lg~ 239 (403)
T PRK15132 161 LALMMPHIHKVNLLTL-PLQQGLALSAIPVIFTSFGFHGSVPSIVSYMGGNIRKLRWVFIIGSAIPLVAYIFWQLATLGS 239 (403)
T ss_pred HHHHHHhcCHHHHhcC-CccccHHHHHHHHHHHHhhCCcccHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 7888888887776532 222224788889999999999999999999988889999999999999999999999999999
Q ss_pred cccccCC----CCc---HHHHHH-HHcChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCCCCchhhhhhcCCcc
Q 009714 268 VPYKFLD----EDA---PLSDAF-ASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRH 339 (528)
Q Consensus 268 ~~~~~~~----~~~---p~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~~~~~n~r~~ 339 (528)
.|.++.. ++. +..+.+ +....++...+..+...++..++..+...+....+..+-+.+. +++.+
T Consensus 240 l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~~~~~--------~~~~r 311 (403)
T PRK15132 240 IDSTTFMGLLANHAGLNGLLQALREVVASPHVELAVHLFADLALATSFLGVALGLFDYLADLFQRRN--------TVGGR 311 (403)
T ss_pred CCHHHHHHHHHccCchHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCc--------cccCC
Confidence 9987542 222 333333 3456778888888888888888888888888887777554211 11111
Q ss_pred cchHHHHHHHHHHHHHHHhhC--HHHHHHHHHH-HHHHHHHHHHHHHHhhhhc
Q 009714 340 TPVHSQVWVGIVAGILAGLFN--VRVLSHILSV-GTLTGYSVVSACVIALRWK 389 (528)
Q Consensus 340 ~P~~a~l~~~~i~~~~~~~~~--~~~l~~~~~~-~~l~~y~~~~~~~~~~r~~ 389 (528)
. ...+++.+...++..... +....+..+. ..++...++.....+.|++
T Consensus 312 ~--~~~~l~flppli~a~~~P~~F~~al~~aG~~~ail~~ilP~~m~~~~r~~ 362 (403)
T PRK15132 312 L--QTGLITFLPPLAFALFYPRGFVMALGYAGVALAVLALLLPSLLVWQSRKQ 362 (403)
T ss_pred c--hhehhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 1 122344555555444432 2222222222 2244556666666666644
No 47
>PRK09664 tryptophan permease TnaB; Provisional
Probab=99.57 E-value=1.1e-11 Score=125.12 Aligned_cols=335 Identities=10% Similarity=0.025 Sum_probs=230.8
Q ss_pred cccccccCcccccCCCCh-HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCchhhhhHHHhchhHHHHHHHHHHHHHHHH
Q 009714 25 APEYSLSPVPWLATPVQV-RVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIG 103 (528)
Q Consensus 25 ~~~~~~~~~~~~~~~~G~-~~~l~~~l~~l~~~~~a~~~ael~~~~P~~~Gg~y~~~~~~~g~~~gf~~gw~~~l~~~~~ 103 (528)
.-...+-+.|.....+|- ...+..++..+.+...++.+.|...++|+ +-+.-..+++.+||.+..+.+..+.+-....
T Consensus 22 ~IGAGMLaLP~~~a~~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~~~~-g~~l~tma~~~LG~~g~~i~~~~~~fl~Y~L 100 (415)
T PRK09664 22 VIGGGMFALPVDLAGAWFFWGAFILIIAWFSMLHSGLLLLEANLNYPV-GSSFNTITKDLIGNTWNIISGITVAFVLYIL 100 (415)
T ss_pred cHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCHHHHHHHHcChHHHHHHHHHHHHHHHHH
Confidence 333444455777777775 77888888999999999999999999998 8899999999999987777776665555555
Q ss_pred HHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 009714 104 AASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTVVKVII 183 (528)
Q Consensus 104 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ln~~g~~~~~~~~~i~~~~~i~~ 183 (528)
...+....++.+...++.. .+.+.+ ....++.+.+++..+-+.|.|...+.++++...+++.
T Consensus 101 l~AYisggG~il~~~l~~~--~~~~i~----------------~~~~~llF~~~~~~~v~~gt~~vd~~nr~l~~~~ii~ 162 (415)
T PRK09664 101 TYAYISANGAIISETISMN--LGYHAN----------------PRIVGICTAIFVASVLWISSLAASRITSLFLGLKIIS 162 (415)
T ss_pred HHHHHhccHHHHHHHHhhh--ccCCCc----------------HHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHH
Confidence 6667777777777765420 111222 2235678888889999999999999999999999999
Q ss_pred HHHHHhhhcccccccCCCCCCCCC-----hHHHHHHHHHHHHhhhhhHHHhhhhhhhcCCCCchhHHHHHHHHHHHHHHH
Q 009714 184 VIVVIFAGAFEVDVSNWSPFAPNG-----FKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYV 258 (528)
Q Consensus 184 l~~~~i~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~f~G~e~~~~~a~E~k~p~k~ip~ai~~s~~~~~i~y~ 258 (528)
.+..+....++.+.++..+..... +...+.+++..+.+|.=...++.+....++-.|+++|+++.+..+..++|+
T Consensus 163 f~~~~~~l~~~i~~~~L~~~~~~~~~~~~~~~i~~alPVl~~SFgfh~iIPsl~~y~~~d~~~~~kaIl~Gs~IpLviY~ 242 (415)
T PRK09664 163 FVIVFGSFFFQVDYSILRDATSTTAGTSYFPYIFMALPVCLASFGFHGNIPSLIICYGKRKDKLIKSVVFGSLLALVIYL 242 (415)
T ss_pred HHHHHHHHhhcccHHHHhcCccccccchHHHHHHHHHHHHHHhhhCCCcchHHHHHhCccHHHHHHHHHHHHHHHHHHHH
Confidence 888888888887776654321111 234777888888888888888998888887678999999999999999999
Q ss_pred HHHHHHHhccccccCC----CCcHH----HHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCCCCchh
Q 009714 259 GVSLVLTGMVPYKFLD----EDAPL----SDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSI 330 (528)
Q Consensus 259 l~~~~~~~~~~~~~~~----~~~p~----~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~ 330 (528)
+-..++.+.+|+|++. ++... ....+...+++...+..+...++..++..+...+....+..+-+
T Consensus 243 ~W~~~ilG~lp~~~~~~~~~~g~nv~~l~~s~~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~D~l~D~~~------- 315 (415)
T PRK09664 243 FWLYCTMGNIPRESFKAIISSGGNVDSLVKSFLGTKQHGIIEFCLLVFSNLAVASSFFGVTLGLFDYLADLFK------- 315 (415)
T ss_pred HHHHHHhcCCCHHHHHHHHHcCCCchHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------
Confidence 9999999988877642 21222 22333456677777777887888877777666666665554332
Q ss_pred hhhhcCCcccchHHHHHHHHHHHHHHHhhCHHHHHHHHHHHH---HHHHHHHHHHHHhhhh
Q 009714 331 FAKVHPKRHTPVHSQVWVGIVAGILAGLFNVRVLSHILSVGT---LTGYSVVSACVIALRW 388 (528)
Q Consensus 331 ~~~~n~r~~~P~~a~l~~~~i~~~~~~~~~~~~l~~~~~~~~---l~~y~~~~~~~~~~r~ 388 (528)
+.|++.+... ...++.+...++.+++....+..+.-.+. +..-+++..-+...|+
T Consensus 316 --~~~~~~~r~~-~~~ltflPPl~~al~~P~gFl~AL~yAG~~~~il~~ilP~lM~~~~Rk 373 (415)
T PRK09664 316 --IDNSHGGRFK-TVLLTFLPPALLYLIFPNGFIYGIGGAGLCATIWAVIIPAVLAIKARK 373 (415)
T ss_pred --CCCcccccee-eehhhHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2111112221 22456666666666665444444433322 2333344444444443
No 48
>PRK10483 tryptophan permease; Provisional
Probab=99.55 E-value=1.2e-11 Score=125.05 Aligned_cols=331 Identities=11% Similarity=-0.006 Sum_probs=231.0
Q ss_pred ccccCcccccCCCCh-HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCchhhhhHHHhchhHHHHHHHHHHHHHHHHHHH
Q 009714 28 YSLSPVPWLATPVQV-RVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAAS 106 (528)
Q Consensus 28 ~~~~~~~~~~~~~G~-~~~l~~~l~~l~~~~~a~~~ael~~~~P~~~Gg~y~~~~~~~g~~~gf~~gw~~~l~~~~~~a~ 106 (528)
..+-+.|.....+|- .+.+..++..+++...++.+.|.+.++|+ +-+.-..+++.+||.+..+.+..+.+-.......
T Consensus 27 aGMLaLP~~~a~~GF~~s~~~l~~~W~~M~~taLlllEv~l~~~~-g~~~~tma~~~LG~~g~~i~~~s~lfl~Y~Ll~A 105 (414)
T PRK10483 27 AGMFSLPVVMSGAWFFWSMAALIFTWFCMLHSGLMILEANLNYRI-GSSFDTITKDLLGKGWNVVNGISIAFVLYILTYA 105 (414)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCHHHHHHHHcChHHHHHHHHHHHHHHHHHHHH
Confidence 334445666667775 67888888999999999999999999998 7899999999999988777766666655555666
Q ss_pred HHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 009714 107 IARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIV 186 (528)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ln~~g~~~~~~~~~i~~~~~i~~l~~ 186 (528)
+....++.+...++. .+.+.+++ .-++.+.+++..+-+.|.|...|+++++...+++..+.
T Consensus 106 Yisg~g~il~~~l~~---~~~~i~~~----------------~~~llF~~~~~~iv~~gt~~vd~~n~~l~~~~i~~f~~ 166 (414)
T PRK10483 106 YISASGSILHHTFAE---MSLNVPAR----------------AAGFGFALLVAFVVWLSTKAVSRMTAIVLGAKVITFFL 166 (414)
T ss_pred HHhCcHHHHHHHHHh---cCCCCcHH----------------HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 677777777776542 12222333 36778888888899999999999999999999998888
Q ss_pred HHhhhcccccccCCCCCC---CCChHHHHHHHHHHHHhhhhhHHHhhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHHH
Q 009714 187 VIFAGAFEVDVSNWSPFA---PNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLV 263 (528)
Q Consensus 187 ~~i~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~k~p~k~ip~ai~~s~~~~~i~y~l~~~~ 263 (528)
.+.....+.+.++..+.. +..+...+.+++..+.+|.=...++.+.+..++-.|++.|++..+..+..++|++-..+
T Consensus 167 ~~~~l~~~i~~~~L~~~~~~~~~~~~~~~~alPvl~~SFgfh~iIPsl~~y~~~d~~kir~~I~iGs~Iplv~yl~W~~~ 246 (414)
T PRK10483 167 TFGSLLGHVQPATLFNVAESNASYAPYLLMTLPFCLASFGYHGNVPSLMKYYGKDPKTIVKCLVYGTLMALALYTIWLLA 246 (414)
T ss_pred HHHHHHhhcCHHHHhccccccchhHHHHHHHHHHHHhhccCCCcchHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777765553211 12234577888999999988899999998887655799999999999999999999999
Q ss_pred HHhccccccCC----CCc---HHHHHHHH-cChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCCCCchhhhhhc
Q 009714 264 LTGMVPYKFLD----EDA---PLSDAFAS-RGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVH 335 (528)
Q Consensus 264 ~~~~~~~~~~~----~~~---p~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~~~~~n 335 (528)
+.+..|+|+.. .++ .+.+.+.. ...+....+..+...++..++..+...+....+..+-+-+ |
T Consensus 247 ~lg~l~~~~~~~~~~~~~ni~~L~~~l~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~d~l~D~~k~~---------~ 317 (414)
T PRK10483 247 TMGNIPRPEFIGIAEKGGNIDVLVQALSGVLNSRSLDLLLVVFSNFAVASSFLGVTLGLFDYLADLFGFD---------D 317 (414)
T ss_pred HhcCCCHHHHHHHHHcCCChHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---------C
Confidence 99999977641 222 22233333 4556777778888888888887777777777666544321 1
Q ss_pred CCcccchHHHHHHHHHHHHHHHhhCHHHHHHHHHHHH---HHHHHHHHHHHHhhhh
Q 009714 336 PKRHTPVHSQVWVGIVAGILAGLFNVRVLSHILSVGT---LTGYSVVSACVIALRW 388 (528)
Q Consensus 336 ~r~~~P~~a~l~~~~i~~~~~~~~~~~~l~~~~~~~~---l~~y~~~~~~~~~~r~ 388 (528)
++.+... ..+++.+...++.+.+....+..+.-.+. +..-+++..-+...|+
T Consensus 318 ~~~~r~~-~~~ltflPPl~~al~~P~~Fl~AL~yAG~~~~il~~ilP~lM~~~~Rk 372 (414)
T PRK10483 318 SAMGRFK-TALLTFLPPVVGGLLFPNGFLYAIGYAGLAATIWAAIVPALLARASRK 372 (414)
T ss_pred cccccee-eehhhHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1112221 12455666666666664444444333322 2233334444444443
No 49
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=99.52 E-value=1.3e-11 Score=123.41 Aligned_cols=259 Identities=18% Similarity=0.265 Sum_probs=219.0
Q ss_pred ccCCCChHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCchhhhhHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009714 36 LATPVQVRVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYV 115 (528)
Q Consensus 36 ~~~~~G~~~~l~~~l~~l~~~~~a~~~ael~~~~P~~~Gg~y~~~~~~~g~~~gf~~gw~~~l~~~~~~a~~~~~~~~~~ 115 (528)
+++.+| +++++.+++++.....++.+..+.+++|+ -..+++.++.+||+.|...+..+.+.+....+.....+++.+
T Consensus 27 l~~~~~-d~Wi~~ll~~~~~l~~~~l~~~l~~~~p~--~~l~~~~~~~~Gk~lg~ii~~~~~l~~l~~~~~~lr~~~~~i 103 (320)
T PF03845_consen 27 LAEQAG-DAWISVLLGGLIGLLLALLIYYLLKRFPG--KTLVEISEKLFGKWLGKIINLLYILYFLLISALVLREFSEFI 103 (320)
T ss_pred HHHHcC-CcHHHHHHHHHHHHHHHHHHHHHHHHCCC--CCHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666 99999999999999999999999999996 789999999999999999999999999888888888888888
Q ss_pred HHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 009714 116 VSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEV 195 (528)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ln~~g~~~~~~~~~i~~~~~i~~l~~~~i~~~~~~ 195 (528)
....- +++|.| .+...+++........|.+..+|...+...+.++.++..........
T Consensus 104 ~~~~l------p~TP~~----------------~i~~~~ll~~~y~a~~G~e~i~R~~~~~~~~~~i~~~~i~~~~~~~~ 161 (320)
T PF03845_consen 104 KTYLL------PETPIW----------------VIILLFLLVAAYAARKGIEVIARVAEILFPIFLILLLLILLLSIPNI 161 (320)
T ss_pred HHHhc------CcCCHH----------------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 76431 233433 47777888889999999999999888888888888777777777888
Q ss_pred cccCCCCCCCCChHHHHHHHHHHHHhhhhhHHHhhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhccccccCCC
Q 009714 196 DVSNWSPFAPNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDE 275 (528)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~k~p~k~ip~ai~~s~~~~~i~y~l~~~~~~~~~~~~~~~~ 275 (528)
|.+|..|..++|+.+++.+.....+.|.|.|.........||| |+..|....+...++++|.+..+......++++.+.
T Consensus 162 ~~~~l~P~~~~g~~~i~~~~~~~~~~~~~~~~~l~~~p~~~~~-~~~~k~~~~~~~~~~~~~~~~~~~~i~vfG~~~~~~ 240 (320)
T PF03845_consen 162 DWDNLLPVLESGIKPILKGSLVISFPFGGIEILLFLFPFVKDK-KKLKKSLLIAILISGLFLLFIIFITIGVFGPELAKK 240 (320)
T ss_pred CHHHeeCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHhc
Confidence 8899999999999999999999999999999999999999997 567899999999999999999999999998876654
Q ss_pred -CcHHHHHHHHcChh----HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 009714 276 -DAPLSDAFASRGLK----YVSVLISFGAVAGLTTTLLVGLYVQSRLYLG 320 (528)
Q Consensus 276 -~~p~~~~~~~~~~~----~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~a 320 (528)
..|..+..+...-+ -...++......+.+......++..++.+..
T Consensus 241 ~~~P~~~~~~~i~i~~fieRld~~~i~~w~~~~~~~~~~~~~~~~~~~~~ 290 (320)
T PF03845_consen 241 LTYPVLELARSIEIGDFIERLDSIFILIWIIGIFIKISLYLYAASEGLSQ 290 (320)
T ss_pred eecHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888888776433 3556677777777777777778888876654
No 50
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=99.49 E-value=5e-11 Score=122.53 Aligned_cols=264 Identities=16% Similarity=0.116 Sum_probs=206.4
Q ss_pred cccccccCcccccCCCCh-HHHHHHHHHHHHHHHHHHHHHHHhccCCCCC-CchhhhhHHHhchhHHHHHHHHHHHHHHH
Q 009714 25 APEYSLSPVPWLATPVQV-RVTISFLLAGAASVLNALCYAELASRFPAVV-GGAYLYAYTAFNELTAFLVFAQLMLDYHI 102 (528)
Q Consensus 25 ~~~~~~~~~~~~~~~~G~-~~~l~~~l~~l~~~~~a~~~ael~~~~P~~~-Gg~y~~~~~~~g~~~gf~~gw~~~l~~~~ 102 (528)
+-..++-..|...+.+|- ..++..++++.++....+.+.|.....|+ . .+.+.-+++.+||.++++.+..+.+....
T Consensus 22 ~IGAGvL~lP~a~~~~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~~-~~~~~~~~~~~~~G~~~~~li~~s~~~~~~~ 100 (415)
T COG0814 22 AIGAGVLFLPVAFGGGGFWPGLLLLIIAWPLTYLSLLLLLEALLSSPN-GKASITSLVEDYLGKKGGILIGLSYFFALYG 100 (415)
T ss_pred ccccchhhhhHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CcccHHHHHHHHhCcchHHHHHHHHHHHHHH
Confidence 333444445777777776 67888889999999999999999999998 6 39999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 009714 103 GAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTVVKVI 182 (528)
Q Consensus 103 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ln~~g~~~~~~~~~i~~~~~i~ 182 (528)
...++....++.+...++.. ++.+ +....+..+++...+..+...|.+..-|.+..+...+++
T Consensus 101 ~~~aY~~~~g~~l~~~~~~~--~~~~---------------~~~r~~~~lif~~~~~~l~~~~~~~~lk~ts~l~~~~v~ 163 (415)
T COG0814 101 LLVAYIVGIGNLLASFLGNQ--FGLN---------------PLPRKLGSLIFALVLAFLSWLGTLAVLKITSLLVFGKVI 163 (415)
T ss_pred HHHHHHhcchhHHHHHHHhh--cccC---------------CcchHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHH
Confidence 88888888888888876521 1110 023345677777778889999999999999999999999
Q ss_pred HHHHHHhhhcccccccCCCCC--C-CCChHHHHHHHHHHHHhhhhhHHHhhhhhhhcCCCCc-hhHHHHHHHHHHHHHHH
Q 009714 183 IVIVVIFAGAFEVDVSNWSPF--A-PNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRD-LPIGILGSLLICAALYV 258 (528)
Q Consensus 183 ~l~~~~i~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~k~p~k~-ip~ai~~s~~~~~i~y~ 258 (528)
.++++.....++.+.++.... . +..+..++.++...+++|.+.-.++.+..|+|+++|+ ++|++..+..+..++|+
T Consensus 164 ~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ipv~vfsF~~h~~i~si~~~~~~~~~~~~~k~~~~~~~~~~vlyi 243 (415)
T COG0814 164 YLVLLVVYLIPHWNPANLFALPSASQSFWKYLLLAIPVFVFSFGFHGNIPSLVNYMRKNSKKAVRKAILIGSLIALVLYI 243 (415)
T ss_pred HHHHHHHHHhcccCHHHHhcccccchhhHHHHHHHhhHHHhhhhCCccchHHHHHhccchhHHHHHHHHHHHHHHHHHHH
Confidence 999998888888776665322 2 3556789999999999999999999999999988877 99999999999999999
Q ss_pred HHHHHHHhccccccC-------CCCcHHHHHHHH-cChhHHHHHHHHHHHHHHHHH
Q 009714 259 GVSLVLTGMVPYKFL-------DEDAPLSDAFAS-RGLKYVSVLISFGAVAGLTTT 306 (528)
Q Consensus 259 l~~~~~~~~~~~~~~-------~~~~p~~~~~~~-~~~~~~~~i~~~~~~~~~~~~ 306 (528)
...+...++.+.+.- +++.....+... ...+.......+....+..++
T Consensus 244 ~~~~~~~~~~~~~~~~~il~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~Ai~tS 299 (415)
T COG0814 244 LVGFFVFGCFGSLVFGNILAAKEQNISLLSALAGVINSPILSIALNIFALFAIATS 299 (415)
T ss_pred HHHHHHHHhcCcccHHHHHHccCchHHHHHHHHHhhcchHHHHHHHHHHHHHHHHH
Confidence 999999998887532 122333333333 344545555555555555544
No 51
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=99.36 E-value=1.5e-09 Score=110.02 Aligned_cols=285 Identities=11% Similarity=0.008 Sum_probs=214.6
Q ss_pred cccccccccccCcccccCCCCh-HHHHHHHHHHHHHHHHHHHHHHHhccC-CCCCCchhhhhHHHhchhHHHHHHHHHHH
Q 009714 21 ARLLAPEYSLSPVPWLATPVQV-RVTISFLLAGAASVLNALCYAELASRF-PAVVGGAYLYAYTAFNELTAFLVFAQLML 98 (528)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~G~-~~~l~~~l~~l~~~~~a~~~ael~~~~-P~~~Gg~y~~~~~~~g~~~gf~~gw~~~l 98 (528)
...++-..++-.+|...+.+|. ..++..+++..++....+.+.|..... |+ ..+.-+-+++.+|+.+|.+.+..|.+
T Consensus 28 l~GTAIGAGmLfLPI~~g~~Gf~p~lillll~~p~m~~s~l~L~e~~L~~~~~-~~~i~~v~~~~lG~~g~~i~~ilYff 106 (443)
T PRK13629 28 LFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYPIAFYCHRALARLCLSGSNP-SGNITETVEEHFGKTGGVVITFLYFF 106 (443)
T ss_pred HHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC-CCCHHHHHHHHcChhHHHHHHHHHHH
Confidence 3444455555556777777777 677777888888999999999999998 54 56788899999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 009714 99 DYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTV 178 (528)
Q Consensus 99 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ln~~g~~~~~~~~~i~~~ 178 (528)
........+.....+.+..++... .+.. +.+..+.+++++.++..+-..|.|..-|++.++..
T Consensus 107 ~ly~ll~aY~~~itn~l~sfl~~q--l~~~---------------~~~r~l~slifv~~l~~iv~~G~~~v~kv~~~Lv~ 169 (443)
T PRK13629 107 AICPLLWIYGVTITNTFMTFWENQ--LGFA---------------PLNRGFVALFLLLLMAFVIWFGKDLMVKVMSYLVW 169 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh--cCcC---------------CccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 887777777766666666543211 1110 11233578888999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcccccccCCCCCC----CC----C-hHHHHHHHHHHHHhhhhhHHHhhhhhh----hc------CCC
Q 009714 179 VKVIIVIVVIFAGAFEVDVSNWSPFA----PN----G-FKEILTGATVVFFAYVGFDAVANSAEE----SK------KPQ 239 (528)
Q Consensus 179 ~~i~~l~~~~i~~~~~~~~~~~~~~~----~~----~-~~~~~~~~~~~~~~f~G~e~~~~~a~E----~k------~p~ 239 (528)
.+++.++.+.+...++.|.+|..... ++ + ....+.+++..+++|.=.-.++.++.. .+ +.+
T Consensus 170 ~~i~~l~~l~~~LiP~w~~~~L~~~~~~~~~~~~~~~~~~~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~~a~ 249 (443)
T PRK13629 170 PFIASLVLISLSLIPYWNSAVIDQVDLGSLSLTGHDGILVTVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFTE 249 (443)
T ss_pred HHHHHHHHHHHHHHHHcCHHHHhcCccccccccccccHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhccccccchHH
Confidence 99999999999999988887765321 11 1 124777888888888666666666555 32 235
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhccccccCC----CCcH-HHHHHHHcCh---------hHHHHHHHHHHHHHHHH
Q 009714 240 RDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLD----EDAP-LSDAFASRGL---------KYVSVLISFGAVAGLTT 305 (528)
Q Consensus 240 k~ip~ai~~s~~~~~i~y~l~~~~~~~~~~~~~~~----~~~p-~~~~~~~~~~---------~~~~~i~~~~~~~~~~~ 305 (528)
|+..|++..+..+..++|++-.+.+.+..|+|++. ++.+ +....+...+ +....+..+...++..+
T Consensus 250 ~k~~rii~~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~~qn~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~ifa~~AI~T 329 (443)
T PRK13629 250 RKCSQIISRASMLMVAVVMFFAFSCLFTLSPQNMAEAKAQNIPVLSYLANHFASMTGTKSTFAITLEYAASIIALVAIFK 329 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCcHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999988763 3445 5555555544 66777777888888888
Q ss_pred HHHHHHHhHHHHHHHhhc
Q 009714 306 TLLVGLYVQSRLYLGLGR 323 (528)
Q Consensus 306 ~~~~~~~~~sR~l~a~a~ 323 (528)
+-.+...+..-.+..+.+
T Consensus 330 SFlGv~LGl~E~l~gl~~ 347 (443)
T PRK13629 330 SFFGHYLGTLEGLNGLIL 347 (443)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888887777777777774
No 52
>PF13906 AA_permease_C: C-terminus of AA_permease
Probab=99.19 E-value=3.7e-11 Score=82.83 Aligned_cols=51 Identities=45% Similarity=0.749 Sum_probs=49.9
Q ss_pred CCCCccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhccccc
Q 009714 460 FSCPGVPLLPAVSIFFNLFLFAQLHYEAWWRFVILSFISIGLYAFYGQYHA 510 (528)
Q Consensus 460 ~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~~ 510 (528)
||+|..|++|+++++.|++++.+++..+|+.+++|+++|+++|+.|++|||
T Consensus 1 F~vP~vP~~P~~si~~ni~Lm~~L~~~twirf~iWl~iGl~iYf~YG~~hS 51 (51)
T PF13906_consen 1 FKVPLVPFLPALSILINIYLMAQLSALTWIRFGIWLAIGLVIYFGYGIRHS 51 (51)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHheeeecC
Confidence 799999999999999999999999999999999999999999999999996
No 53
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=98.91 E-value=4.8e-06 Score=79.86 Aligned_cols=249 Identities=16% Similarity=0.153 Sum_probs=154.9
Q ss_pred ccCCCCh---HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCchhhhhHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009714 36 LATPVQV---RVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLA 112 (528)
Q Consensus 36 ~~~~~G~---~~~l~~~l~~l~~~~~a~~~ael~~~~P~~~Gg~y~~~~~~~g~~~gf~~gw~~~l~~~~~~a~~~~~~~ 112 (528)
+-|..|+ ...++.++++++....+....|+++++. +...-.+.++.+||.++.+---...+. ....+....+.+
T Consensus 27 i~QFF~~~G~~s~~gIivs~vlf~~~g~vim~ig~~f~--a~~y~~~~~~v~~~~~~ki~d~~iif~-lf~~~vVM~AGa 103 (349)
T COG3949 27 IMQFFGKYGVYSILGIILSTVLFTLSGAVIMTIGKKFN--ATSYREILKYVSGPKFAKIIDIIIIFF-LFSTAVVMLAGA 103 (349)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhc--ccchHHHHHHHhhHHHHHHHHHHHHHH-HHHHHHHHhccc
Confidence 4444444 5899999999999999999999999996 588889999999999988765433332 333334443333
Q ss_pred H-HHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHHhh
Q 009714 113 S-YVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWG-VGESSVLNSCMTVVKVIIVIVVIFA 190 (528)
Q Consensus 113 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ln~~g-~~~~~~~~~i~~~~~i~~l~~~~i~ 190 (528)
. .++..+ +.|.|. -+++++....++..++ ++-.-+++.+.+-+.++.+......
T Consensus 104 gs~~~e~~--------~lP~wi----------------Gali~i~~v~i~lfl~~vegi~tvn~iI~P~LIi~l~~v~~~ 159 (349)
T COG3949 104 GSLLEEMF--------GLPYWI----------------GALIIILLVLILLFLGRVEGIITVNGIITPFLIIILVLVTLS 159 (349)
T ss_pred hhHHHHHh--------CccHHH----------------HHHHHHHHHHHHHHHhcccceeeeheeHHHHHHHHHHHHHHH
Confidence 3 444433 345553 3355555555555565 6666666655555544442222211
Q ss_pred hcc--cccccCCCCCCCCChHHHHHHHHHHHHhhhhhHHHhhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhcc
Q 009714 191 GAF--EVDVSNWSPFAPNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMV 268 (528)
Q Consensus 191 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~k~p~k~ip~ai~~s~~~~~i~y~l~~~~~~~~~ 268 (528)
... +.+..++..-...+|..-..+ ..+.=....+.....+++|+|++ |+.-++-..+-++.+++..+....+....
T Consensus 160 ~~f~~~~~~a~~~~~~~~~W~~~~~~-Y~alNi~~~~avLv~lg~~~~~~-~~~~~g~l~gglIlgvl~~l~nlsLi~~~ 237 (349)
T COG3949 160 FQFTNLGNAAQIVLTKQGNWKASAVG-YGALNILVAVAVLVPLGGRMESR-KVSGIGGLIGGLILGVLLFLINLSLIALY 237 (349)
T ss_pred HHHhhccchhhhcCCcCCChHHHHHh-hhhHHHHhHhHhhhhhccccccc-chhhhhhhhhhHHHHHHHHHHHHHHHhhc
Confidence 111 111111211112233222211 22222224445566778999986 77788888888888888777777777665
Q ss_pred ccccCCCCcHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 009714 269 PYKFLDEDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQS 315 (528)
Q Consensus 269 ~~~~~~~~~p~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~s 315 (528)
| +..+.|-|..+++++.. +....++.+...+...++..+.+++-+
T Consensus 238 ~-~v~~~dIP~l~i~~~~~-~~i~lvm~vIi~~~IytT~vg~iy~l~ 282 (349)
T COG3949 238 D-KVVNYDIPLLTIAKNFS-PLIGLVMSVIIWLEIYTTTVGLIYGLA 282 (349)
T ss_pred c-hhhccCCcHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 45567889999998886 666777777888888887776666633
No 54
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=98.86 E-value=3.2e-07 Score=92.71 Aligned_cols=321 Identities=16% Similarity=0.174 Sum_probs=180.9
Q ss_pred cccCcccccCCCChHHHHHHHHHHHHHHHHHHHHHHHhccCCCC------CCchhhhhHHHhchh-HHHHHHHHHHHHHH
Q 009714 29 SLSPVPWLATPVQVRVTISFLLAGAASVLNALCYAELASRFPAV------VGGAYLYAYTAFNEL-TAFLVFAQLMLDYH 101 (528)
Q Consensus 29 ~~~~~~~~~~~~G~~~~l~~~l~~l~~~~~a~~~ael~~~~P~~------~Gg~y~~~~~~~g~~-~gf~~gw~~~l~~~ 101 (528)
++.++......+||+++.-..+.+++.+.+.++=.-|+.++.++ .||..+|.+|.+|.+ ++...+.....++.
T Consensus 37 NI~GVa~AI~~GGPGAiFWMWi~a~~Gmatk~~E~~La~~yR~~~~~G~~~GGP~yyi~~gl~~k~la~~fai~~~~~~~ 116 (416)
T PF01235_consen 37 NIAGVATAIAIGGPGAIFWMWISALLGMATKYAEVTLAQKYREKDEDGEYRGGPMYYIEKGLGSKWLAILFAIFLIIAFG 116 (416)
T ss_pred hHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHheEECCCCCEeecHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 33344456778899655555555666555555544455544431 388999999999854 44444433333332
Q ss_pred HH-HHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 009714 102 IG-AASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTVVK 180 (528)
Q Consensus 102 ~~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ln~~g~~~~~~~~~i~~~~~ 180 (528)
.. ....+...++.++..+ +.|.| ..++++.++..++-.-|+|..+++...+.-++
T Consensus 117 ~~~~~~Q~nsi~~~~~~~f--------~i~~~----------------~~gi~l~~l~~~vi~GGikrI~~v~~~lVP~M 172 (416)
T PF01235_consen 117 IGFNMVQANSIADALSSAF--------GIPPW----------------ITGIILAILVALVIFGGIKRIAKVSEKLVPFM 172 (416)
T ss_pred hhhhHHHHHHHHHHHHhhc--------cccHH----------------HHHHHHHHHHHHHHHcchhHHHHHHHHHHHHH
Confidence 22 2333333333333222 12223 36777777788888899999999988888777
Q ss_pred HHHHHHHHhhhcccccccCCC---------CCCCC----ChHHHH------HHHHHHHHhh---hhhHHHhhhhhhhcCC
Q 009714 181 VIIVIVVIFAGAFEVDVSNWS---------PFAPN----GFKEIL------TGATVVFFAY---VGFDAVANSAEESKKP 238 (528)
Q Consensus 181 i~~l~~~~i~~~~~~~~~~~~---------~~~~~----~~~~~~------~~~~~~~~~f---~G~e~~~~~a~E~k~p 238 (528)
.+.-++..+.-+.. |.++.. .|.|+ |..+.. .++.-..|+= .|....+|.+.|+++|
T Consensus 173 a~~Yi~~~l~ii~~-n~~~ip~~~~~If~~AF~~~aa~GG~~G~~i~~ai~~Gv~Rg~fSNEAG~Gsa~~a~a~a~~~hP 251 (416)
T PF01235_consen 173 AILYILGGLIIIII-NIDQIPAAFSLIFSSAFTPKAAFGGFAGSTIMMAIRQGVARGLFSNEAGLGSAPIAHAAAETDHP 251 (416)
T ss_pred HHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHcCCccchhhHHHHHHHHHHHHhhhhhhccCCCCCChhHHHHHHhcCCCc
Confidence 65555443332221 222211 22222 222211 2222234443 5777788888899999
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhcccccc---CCCCcHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 009714 239 QRDLPIGILGSLLICAALYVGVSLVLTGMVPYKF---LDEDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQS 315 (528)
Q Consensus 239 ~k~ip~ai~~s~~~~~i~y~l~~~~~~~~~~~~~---~~~~~p~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~s 315 (528)
.|.=-.++.-..+=+.++-.+..+.+...-.+.. .+...-..++++...+++...++.+..++-.+++..++.+..-
T Consensus 252 ~~QGl~~~~~vFiDTiiVCt~TalvIl~tG~~~~~~~~~g~~l~~~Af~~~~g~~g~~~v~i~l~lFafTTilg~~~yge 331 (416)
T PF01235_consen 252 VRQGLVQMFEVFIDTIIVCTITALVILVTGVWSWGSGLEGAALTQAAFSTVLGSWGPYFVAIALFLFAFTTILGWYYYGE 331 (416)
T ss_pred HHHeeeeeehHhHHHHHHHHHHHHHhhccCCCCCCCcchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8776555555444444444455555444332221 1222234567777777888999999999999999999998888
Q ss_pred HHHHHhhcCCCCchhhhhhcCCcccchHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 009714 316 RLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLFNVRVLSHILSVGTLTGYSVVSACVIALRW 388 (528)
Q Consensus 316 R~l~a~a~dg~lP~~~~~~n~r~~~P~~a~l~~~~i~~~~~~~~~~~~l~~~~~~~~l~~y~~~~~~~~~~r~ 388 (528)
|.+.-+-+ ++|...+++.+.+ ....+....+.+.+-++..+..-+.-+...++.+.+++
T Consensus 332 ~~~~yl~~-----------~~~~~~~~ri~~i---~~~~~G~~~~~~~vW~~~Di~~~lmai~Nlial~lL~~ 390 (416)
T PF01235_consen 332 KCAEYLFG-----------GKKAIWIYRILFI---AMVFIGAVIDLDLVWDLADIANGLMAIPNLIALLLLSK 390 (416)
T ss_pred HHHHHHcC-----------CceEEEeeeehhh---hhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 87766541 2233445554322 22233333455656666555555444444555555543
No 55
>PRK11375 allantoin permease; Provisional
Probab=98.70 E-value=0.00037 Score=73.45 Aligned_cols=293 Identities=11% Similarity=0.018 Sum_probs=141.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCchhhhhHHHhchhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhh
Q 009714 43 RVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLM-LDYHIGAASIARSLASYVVSILEL 121 (528)
Q Consensus 43 ~~~l~~~l~~l~~~~~a~~~ael~~~~P~~~Gg~y~~~~~~~g~~~gf~~gw~~~-l~~~~~~a~~~~~~~~~~~~~~~~ 121 (528)
.++++.+++.++........+..+.++. =+.....+..||.+-+.+.+.... +..+...+.+....++.+..+.+.
T Consensus 61 ~ai~ai~lG~~i~~~~~~l~g~~G~~~G---l~~~v~sR~sFG~~Gs~l~~~~rai~~~igW~~vqt~~~g~al~~~l~~ 137 (484)
T PRK11375 61 SIMLAIILSAFFIAAVMVLNGAAGSKYG---VPFAMILRASYGVRGALFPGLLRGGIAAIMWFGLQCYAGSLALLILIGK 137 (484)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccC---CChhHhHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666665555554444444444432 266678888899776566665553 344444556666666666655432
Q ss_pred -cccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccccccCC
Q 009714 122 -FPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNW 200 (528)
Q Consensus 122 -~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ln~~g~~~~~~~~~i~~~~~i~~l~~~~i~~~~~~~~~~~ 200 (528)
+|.+.+ .++.. ...+.+....+...++.++...+-..|.|...+++.+...+.++..+...+..+...+.+..
T Consensus 138 i~~~~~~-~~~~~-----~~~g~~~~~~i~~~i~~~l~~~~~~~g~~~i~~l~~i~~p~~~i~~~~~~~~~~~~~g~~~~ 211 (484)
T PRK11375 138 IWPGFLT-LGGDF-----TLLGLSLPGLITFLIFWLVNVGIGFGGGKVLNKFTAILNPCIYIVFGGMAIWAISLVGIGPI 211 (484)
T ss_pred hcccccc-ccccc-----ccCCCcHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchh
Confidence 222111 11000 00111111223344555666666778999999999888877765555544443332222111
Q ss_pred CCCCCC-------ChHHHHHHHHHHHHhhh-hhHHHhhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHH-Hhccccc
Q 009714 201 SPFAPN-------GFKEILTGATVVFFAYV-GFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVL-TGMVPYK 271 (528)
Q Consensus 201 ~~~~~~-------~~~~~~~~~~~~~~~f~-G~e~~~~~a~E~k~p~k~ip~ai~~s~~~~~i~y~l~~~~~-~~~~~~~ 271 (528)
....|. ....+..++...+-++. +.-..+..+...||+ |+.-++...+..+...+........ .+....-
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~i~~vig~~~~~~~~~~D~tRy~k~~-~~~~~~~~~g~~i~~~~~~~~g~~~~~~a~~~~ 290 (484)
T PRK11375 212 FDYIPSGIQKAENSGFLFLVVINAVVAVWAAPAVSASDFTQNAHSF-RAQALGQTLGLVVAYILFAVASVCIIAGASIHY 290 (484)
T ss_pred hccCcccccCCcchHHHHHHHHHHHHHHHHHHHccccchhcccCCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 111111 12234444433332333 333456677777776 5555666666655555443333222 1111110
Q ss_pred cCCCCcHHHHHHHHcChhHHHHHHHHHHHHHHHHHHH-HHHHhHHHHHHHhhcCCCCchhhhhhcCCcccchHHHHHHHH
Q 009714 272 FLDEDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLL-VGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGI 350 (528)
Q Consensus 272 ~~~~~~p~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~sR~l~a~a~dg~lP~~~~~~n~r~~~P~~a~l~~~~ 350 (528)
.....+|. +++.+........+..+..+++..++.. ...++.+= .-.+.+||.+.+ | ++.++.++
T Consensus 291 g~~~~dp~-~i~~~~~~~~~~~~a~l~~v~a~~~tN~~~N~ys~~~-----~l~~l~pk~i~~---~-----~~~~i~~i 356 (484)
T PRK11375 291 GADTWNVL-DIVQRWDSLFASFFAVLVILMTTISTNATGNIIPAGY-----QIAALAPTKLTY---K-----NGVLIASI 356 (484)
T ss_pred CCCcCCHH-HHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccHHH-----HHHHhCcCccch---h-----hHHHHHHH
Confidence 11223443 3444433344444455555666665543 34444433 234577765332 2 34555656
Q ss_pred HHHHHHHhh
Q 009714 351 VAGILAGLF 359 (528)
Q Consensus 351 i~~~~~~~~ 359 (528)
++.++..+.
T Consensus 357 ig~~~~pw~ 365 (484)
T PRK11375 357 ISLLICPWK 365 (484)
T ss_pred HHHHhccHH
Confidence 655554443
No 56
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=98.68 E-value=9e-06 Score=82.81 Aligned_cols=314 Identities=14% Similarity=0.169 Sum_probs=167.5
Q ss_pred ccccCCCChHHHHHHHHHHHHHHHHHHHHHHHhccCC---CC---CCchhhhhHHHhc-hhHHHHHHHHHHHHH-HHHHH
Q 009714 34 PWLATPVQVRVTISFLLAGAASVLNALCYAELASRFP---AV---VGGAYLYAYTAFN-ELTAFLVFAQLMLDY-HIGAA 105 (528)
Q Consensus 34 ~~~~~~~G~~~~l~~~l~~l~~~~~a~~~ael~~~~P---~~---~Gg~y~~~~~~~g-~~~gf~~gw~~~l~~-~~~~a 105 (528)
+-....+||+++.-..+++++...+...-.-++.++. ++ .||.-.|.++.++ |++|...+.. .+.+ .....
T Consensus 70 a~Ai~~GGpGAvFWMWI~allGm~~~~~e~~L~~~yr~~~~~g~~~GGP~yyi~~gl~~k~lg~lfa~~-~i~~f~~~~~ 148 (425)
T TIGR00835 70 ATAIAIGGPGAVFWMWVTAFIGMATKFVESTLAQKYRERDADGVFRGGPMYYIKKGLGMRWLAVLFAVF-LIASFGIGNM 148 (425)
T ss_pred HHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCEecChHHHHHHHhCccHHHHHHHHH-HHHHHhhhHH
Confidence 4457788996633333334443333333333333333 20 1344478888766 7777776655 3333 33344
Q ss_pred HHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 009714 106 SIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVI 185 (528)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ln~~g~~~~~~~~~i~~~~~i~~l~ 185 (528)
..+...++.++..+ +.|.| ..++++.++...+-.-|+|..+++...+.-+..+..+
T Consensus 149 ~Q~nsi~~~~~~~~--------~~~~~----------------v~~i~l~~l~~~vi~GGik~Ia~v~~~lvP~m~~~Y~ 204 (425)
T TIGR00835 149 VQANAIASALSNAF--------NVPKL----------------VTGIVLTVLTALIIFGGLKRIAKISSVVVPFMALLYV 204 (425)
T ss_pred HHHHHHHHHHHHHc--------CCcHH----------------HHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH
Confidence 55555555544221 12333 3666666666777667999999999998888776654
Q ss_pred HHHhhhcccccccCCC---------CCCCC----ChHH------HHHHHHHHHHhh---hhhHHHhhhhhhhcCCCCchh
Q 009714 186 VVIFAGAFEVDVSNWS---------PFAPN----GFKE------ILTGATVVFFAY---VGFDAVANSAEESKKPQRDLP 243 (528)
Q Consensus 186 ~~~i~~~~~~~~~~~~---------~~~~~----~~~~------~~~~~~~~~~~f---~G~e~~~~~a~E~k~p~k~ip 243 (528)
...+.-.. .|.+|.. .|.++ |..+ +..++.-..|+= .|....+|.+.|+++|.|.=-
T Consensus 205 ~~~l~ii~-~n~~~lp~~~~~If~~AF~~~a~~GG~~G~~v~~ai~~Gv~Rg~fSNEAG~Gsa~~a~a~a~~~hP~~QGl 283 (425)
T TIGR00835 205 IMALYIII-MNIEQLPAVISLIFRSAFGGDAAAGGFAGSTVAQAIMIGVKRGLFSNEAGMGSAPIAAAAAQVSHPVRQGL 283 (425)
T ss_pred HHHHHHHH-HhHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHHhhHHHHhccccccCcHHHHHHHhcCCCcHHHHH
Confidence 43332111 1333321 22222 2222 112333344444 566777888888899987655
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccc---cCCCCcHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 009714 244 IGILGSLLICAALYVGVSLVLTGMVPYK---FLDEDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLG 320 (528)
Q Consensus 244 ~ai~~s~~~~~i~y~l~~~~~~~~~~~~---~~~~~~p~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~a 320 (528)
.++.-..+=+.++.....+.+...-.++ .++...-..++++...+++...++.+..++-.+++..++.+-.-+.+.-
T Consensus 284 ~~~~~vfiDTivvCt~Talvil~tg~~~~~~~~~g~~lt~~af~~~~g~~g~~~v~i~~~lFaftTii~~~yyge~~~~y 363 (425)
T TIGR00835 284 VQMLGVFIDTMIVCTATALVILLSGVWNNGEGLSGAQLTQQALSYGLGSFGAVFVAVALFLFAFSTIIGWYYYGEKNAEF 363 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCccCCCCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5554444434444444444443332222 1111122335667666667889999999999999999999888887766
Q ss_pred hhcCCCCchhhhhhcCCcccchHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 009714 321 LGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLFNVRVLSHILSVGTLTGYSVVSACVIALRW 388 (528)
Q Consensus 321 ~a~dg~lP~~~~~~n~r~~~P~~a~l~~~~i~~~~~~~~~~~~l~~~~~~~~l~~y~~~~~~~~~~r~ 388 (528)
+-+++ ...+++.+.+ +...+....+.+.+-++..+..-+.-....++.+.+++
T Consensus 364 l~~~~------------~~~~~r~~~~---~~~~~g~~~~~~~vw~~~D~~~~lm~i~Nlial~~L~~ 416 (425)
T TIGR00835 364 LKGNK------------KVKLYRLVFL---AAVFVGAFLSLDLVWNLADLSMGLMAIPNLIAILLLRK 416 (425)
T ss_pred hcCCC------------ccceeeehhh---HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 53322 1223332221 22223333455555555555444444444445555553
No 57
>PLN03074 auxin influx permease; Provisional
Probab=98.68 E-value=2.7e-05 Score=81.61 Aligned_cols=65 Identities=15% Similarity=0.164 Sum_probs=51.3
Q ss_pred CChHHHHHHHHHHHHhhhhhHHHhhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 009714 206 NGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYK 271 (528)
Q Consensus 206 ~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~k~p~k~ip~ai~~s~~~~~i~y~l~~~~~~~~~~~~ 271 (528)
.++..+..++....|+|.|.-....+-.|+||| ++.++....+...+..+|+...+......+++
T Consensus 230 ~~~~~~f~~~~~i~faf~g~~v~~~I~~~M~~P-~~F~~~~~l~~~~v~~~y~~~~~~gY~~fG~~ 294 (473)
T PLN03074 230 TKLVLYFTGATNILYTFGGHAVTVEIMHAMWKP-QKFKYIYLAATLYVLTLTLPSAAAVYWAFGDE 294 (473)
T ss_pred hhHHHHHHHHHHHHHHhcccccHHHHHHhccCh-hcccchHHHHHHHHHHHHHHHHHeeeeeechh
Confidence 345566667777899999999999999999999 56888888888888888888766555555543
No 58
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=98.51 E-value=0.00014 Score=73.19 Aligned_cols=263 Identities=18% Similarity=0.229 Sum_probs=162.9
Q ss_pred ccccCCCChH-HHHHHHHHHHHHHHHHHHHHHHhccCCC------CCCchhhhhHHHhc-hhHHHHHHHHHHHHHH-HHH
Q 009714 34 PWLATPVQVR-VTISFLLAGAASVLNALCYAELASRFPA------VVGGAYLYAYTAFN-ELTAFLVFAQLMLDYH-IGA 104 (528)
Q Consensus 34 ~~~~~~~G~~-~~l~~~l~~l~~~~~a~~~ael~~~~P~------~~Gg~y~~~~~~~g-~~~gf~~gw~~~l~~~-~~~ 104 (528)
......+||+ ..|.|+. +++.+.+.++=+-|+..|.+ -.||.-+|.++.+| |+.|-..+....+++. ...
T Consensus 86 AtAI~~GGPGAvFWMWi~-Al~Gmat~f~E~~La~~Yr~kd~~G~~~GGP~yYi~kGl~~r~l~v~FA~~li~afg~i~n 164 (452)
T COG1115 86 ATAIALGGPGAVFWMWIV-ALFGMATKFAESTLAQKYRVKDKDGEYRGGPAYYIEKGLGMRWLAVLFAFALIAAFGFIGN 164 (452)
T ss_pred HHHHHcCCCccHHHHHHH-HHHHHHHHHHHHHHHhheeEeCCCCCCcCChHHHHHhhcCCcHHHHHHHHHHHHHHHhhcc
Confidence 3456778995 5555554 44444454444445555542 13789999999998 5667666666666665 466
Q ss_pred HHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 009714 105 ASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIV 184 (528)
Q Consensus 105 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ln~~g~~~~~~~~~i~~~~~i~~l 184 (528)
...+.++++.+..-++. |.| +.++++.++...+-..|+|..+++.....-+..+.-
T Consensus 165 ~vQ~NsIa~a~~~af~~--------~~~----------------~~gi~la~l~~~VI~GGi~rIa~v~~~vVPfMA~~Y 220 (452)
T COG1115 165 GVQSNSIASALANAFGI--------PPL----------------VTGIVLALLVALVIFGGIKRIAKVSSKVVPFMAILY 220 (452)
T ss_pred hhhHHHHHHHHHHhcCC--------cHH----------------HHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHH
Confidence 77777777777765432 222 478888888888889999999999888776654443
Q ss_pred HHHHhhhcccccccCC---------CCCCCC----ChH------HHHHHHHHHHHhh---hhhHHHhhhhhhhcCCCCch
Q 009714 185 IVVIFAGAFEVDVSNW---------SPFAPN----GFK------EILTGATVVFFAY---VGFDAVANSAEESKKPQRDL 242 (528)
Q Consensus 185 ~~~~i~~~~~~~~~~~---------~~~~~~----~~~------~~~~~~~~~~~~f---~G~e~~~~~a~E~k~p~k~i 242 (528)
++..+.-+. .|.++. +.|.+. |+. .+..++.-..|+= .|....++.+.+++||.|+=
T Consensus 221 i~~~~~Ii~-~n~~~iP~~i~~If~sAF~~~aa~GG~~G~~v~~aI~~Gv~RGlfSNEAGmGsap~aaAaA~~~hPv~QG 299 (452)
T COG1115 221 VLVALVIIV-LNISQIPAVIALIFSSAFGPKAAAGGFAGYTVAQAIRNGVKRGLFSNEAGMGSAPIAAAAAKTDHPVKQG 299 (452)
T ss_pred HHHHHHHHH-hhHhhhHHHHHHHHHhcCCchhhhhhhhhHHHHHHHHHHHHHHhhcccccCCcchhHHHhhcCCCcHHHh
Confidence 332222111 111111 112221 222 2344444455555 45666677777888887765
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccccccCC--CCc-HHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 009714 243 PIGILGSLLICAALYVGVSLVLTGMVPYKFLD--EDA-PLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYL 319 (528)
Q Consensus 243 p~ai~~s~~~~~i~y~l~~~~~~~~~~~~~~~--~~~-p~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~ 319 (528)
-..+....+=+.++.....+.++..-.++..+ +.. -..+++++..+++...++.+..++-.+++..++.+-.-|.+.
T Consensus 300 lv~~~gvfiDT~iVCt~Ta~iIL~sg~~~~~~~~~G~~ltq~A~~~~~g~~G~~fv~i~l~lFafTTIlg~yyyge~~~~ 379 (452)
T COG1115 300 LVQMLGVFIDTLVVCTATAFIILLSGAWNSGGGLSGAALTQAAFSSHLGSWGSYFVAIALFLFAFTTILGWYYYGEKNIE 379 (452)
T ss_pred HHHHhhhhhhhhHHhhHHHHHHHHcCCcccCCCCchHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444434455555555555444333222 233 344677888888999999999999999999999998888776
Q ss_pred Hhh
Q 009714 320 GLG 322 (528)
Q Consensus 320 a~a 322 (528)
-+.
T Consensus 380 fl~ 382 (452)
T COG1115 380 FLF 382 (452)
T ss_pred HHh
Confidence 555
No 59
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=98.47 E-value=0.0026 Score=65.06 Aligned_cols=238 Identities=11% Similarity=0.072 Sum_probs=126.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCchhhhhHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 009714 43 RVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELF 122 (528)
Q Consensus 43 ~~~l~~~l~~l~~~~~a~~~ael~~~~P~~~Gg~y~~~~~~~g~~~gf~~gw~~~l~~~~~~a~~~~~~~~~~~~~~~~~ 122 (528)
.++++.+++-++-......+++++.+..- -...-.+..||..-+.+.....++.+.-..+.+....++-..
T Consensus 53 ~si~aillG~llG~i~~A~~s~~Ga~~Gl---pqmi~sR~~fG~~Gs~l~sll~~~~~iGW~~v~~~l~~~a~~------ 123 (442)
T COG1457 53 QSLLAILLGNLLGGIFMAYFSYQGARTGL---PQMILSRYPFGVKGSILPSLLNGITLIGWFGVNVILSGIAIG------ 123 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccCC---ChheeecccccchhHHHHHHHHHHHHhhHHHHHHHHhccccc------
Confidence 56667777776666666667777665433 344455556888877777776666665555555555444311
Q ss_pred ccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhccccc-ccCCC
Q 009714 123 PFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVD-VSNWS 201 (528)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ln~~g~~~~~~~~~i~~~~~i~~l~~~~i~~~~~~~-~~~~~ 201 (528)
..++.|.| ...+++.++.++..++|.|...+++++.........+..+...+-..+ .+...
T Consensus 124 --~~~~~~~~----------------~~ili~g~l~~l~~ifG~r~l~~l~~~a~~~~~~lf~~l~~~~~~~~~~~~~~~ 185 (442)
T COG1457 124 --SGTGLPVW----------------AGILIIGVLMTLVTIFGYRALHKLERIAVPLLLLLFLYLLALLFRSKGGLDALW 185 (442)
T ss_pred --cCCCCcHH----------------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccceee
Confidence 01222322 245555667788888999999999999998887776665555443111 11111
Q ss_pred CCCCCChHHHHHHHHHHHHhhhhh-HHHhhhhhhhcCCC-CchhHHHHHHHHHHHHH-HHHHHHHHHhccccccCCCCcH
Q 009714 202 PFAPNGFKEILTGATVVFFAYVGF-DAVANSAEESKKPQ-RDLPIGILGSLLICAAL-YVGVSLVLTGMVPYKFLDEDAP 278 (528)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~f~G~-e~~~~~a~E~k~p~-k~ip~ai~~s~~~~~i~-y~l~~~~~~~~~~~~~~~~~~p 278 (528)
.-.|.++..++.++..++-.+..+ -.++..+.-.|+|+ +++-.+...+......+ +++-.........+ + +
T Consensus 186 ~~~~~~~~~fl~a~slv~g~~~sw~~~~aDysRy~~~~t~~~~~~~~~~G~~l~~~~~~ilGa~~a~a~g~~-----~-~ 259 (442)
T COG1457 186 VKGPTSPLSFLSALSLVIGSFASWGPYAADYSRYAPSPTPSKAFLAAVLGFFLGTSFMMILGAALAAAAGNA-----D-S 259 (442)
T ss_pred ccCCCcchhHHHHHHHHHHHHHhhhhhhhhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----c-h
Confidence 112445556676666655555444 33445555555554 12223333333333322 33332222222211 1 3
Q ss_pred HHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 009714 279 LSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQS 315 (528)
Q Consensus 279 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~s 315 (528)
..+.....++ +.....+...++..++....+++++
T Consensus 260 ~~~~~~~~G~--~g~~~~lil~l~~~ttN~~nlYsa~ 294 (442)
T COG1457 260 IADVMLGLGG--FGLPAILILVLGTVTTNANNLYSAG 294 (442)
T ss_pred HHHHHHhccc--HHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 4444444443 3444445555555555444444444
No 60
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=98.44 E-value=8.2e-05 Score=76.48 Aligned_cols=315 Identities=15% Similarity=0.058 Sum_probs=176.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCCCc-----hhhhhHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009714 45 TISFLLAGAASVLNALCYAELASRFPAVVGG-----AYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSIL 119 (528)
Q Consensus 45 ~l~~~l~~l~~~~~a~~~ael~~~~P~~~Gg-----~y~~~~~~~g~~~gf~~gw~~~l~~~~~~a~~~~~~~~~~~~~~ 119 (528)
+...++.+++.+-++..+.+.-...|. -.| .-+-.+++||+..-.++++...+........+....++.+..++
T Consensus 72 ~~~Ll~~~iit~YT~~LL~~~~~~~~~-~~~~r~~~Y~dl~~~afG~~~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~ 150 (437)
T KOG1303|consen 72 IVILLLFAIITLYTATLLSRCWEMHEA-VPGKRRYRYPDLGQAAFGPKGRLLVSVLQYLELFGICVVYIILAGDNLKALF 150 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccC-CCCccCCChHHHHHHHhCCCceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666777777777777777777777 566 55666778887665667777777666667777777788888776
Q ss_pred hhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhccccccc-
Q 009714 120 ELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVS- 198 (528)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ln~~g~~~~~~~~~i~~~~~i~~l~~~~i~~~~~~~~~- 198 (528)
+.......... ......+.+++..... -+...+...++..+..+..+.........+..+.-..
T Consensus 151 ~~~~~~~~~l~------------~~~f~iif~~i~~~~s---~lp~~~~l~~~S~~~avmS~~~a~~~~~~g~~~g~~~~ 215 (437)
T KOG1303|consen 151 PIVSLNDNSLD------------KQYFIIIFGLIVLPLS---QLPNFHSLSYLSLVGAVMSTLYAVILIVLGIADGVGFC 215 (437)
T ss_pred HhcCCcccccc------------ceehhhhHHHHHHHHH---HCCCcchhHHHHHHHHHHHHHHHHHHHHHhhccccccC
Confidence 64321110110 0011111222222222 2444455555555555555555555555555442111
Q ss_pred -CCCCCCCCChHHH-HHHHHHHHHhhhhhHHHhhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhccccccCCCC
Q 009714 199 -NWSPFAPNGFKEI-LTGATVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDED 276 (528)
Q Consensus 199 -~~~~~~~~~~~~~-~~~~~~~~~~f~G~e~~~~~a~E~k~p~k~ip~ai~~s~~~~~i~y~l~~~~~~~~~~~~~~~~~ 276 (528)
...+....+..+. +.++....|+|.|.-...+.-..+|+|+| .+|+...+..+++.+|+..+..-....+++.-+
T Consensus 216 ~~~~~~~~~~~~~~~f~a~g~iaFaf~gH~v~peIq~tMk~p~~-f~~~~lis~~~~~~~y~~vai~GY~aFG~~~~~-- 292 (437)
T KOG1303|consen 216 APSGGYLDLGTIPTVFTALGIIAFAYGGHAVLPEIQHTMKSPPK-FKKALLISYIIVTFLYFPVAIIGYWAFGDSVPD-- 292 (437)
T ss_pred CcccCcccCCCCcchhhhhhheeeeecCCeeeeehHhhcCCchh-hhhHHHHHHHHHHHHHHHHHHhhhhhhccccch--
Confidence 1011111111122 67888899999999999999999999977 999999999999999999999887777643321
Q ss_pred cHHHHHHHHc-ChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCCCCchhhhh-hcCCcccchHHHHHHHHHHHH
Q 009714 277 APLSDAFASR-GLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAK-VHPKRHTPVHSQVWVGIVAGI 354 (528)
Q Consensus 277 ~p~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~~~~-~n~r~~~P~~a~l~~~~i~~~ 354 (528)
+..... ...+.....++...+..+++..-+........-.+.+. -++.+.| .+.++-.-+....+ ....+
T Consensus 293 ----~il~s~~~p~~~~~~ani~i~~h~i~s~~i~a~pl~~~~E~~~~~--~~~~~~~~~~~~R~~~Rt~~v~--~~~~v 364 (437)
T KOG1303|consen 293 ----NILLSLQPPTWLIALANILIVLHLIGSYQIYAQPLFDVVEKLIGV--KHPDFKKRSLVLRLLVRTFFVA--VTTFV 364 (437)
T ss_pred ----hhhhcccCchhHHHHHHHHHHHHHhhhhhhhhcchHHHHHHHhcc--CCccccccccceeeehhhHHHH--HHHHH
Confidence 122233 35666677777777777766544432222322222221 1111221 11111111111111 11111
Q ss_pred HHHhhCHHHHHHHHHHHH--HHHHHHHHHHHHhh
Q 009714 355 LAGLFNVRVLSHILSVGT--LTGYSVVSACVIAL 386 (528)
Q Consensus 355 ~~~~~~~~~l~~~~~~~~--l~~y~~~~~~~~~~ 386 (528)
-..+..++.+.++.+... ...+.+++..++..
T Consensus 365 A~~~PfFg~l~~lvGa~~~~p~t~ilP~~~yl~~ 398 (437)
T KOG1303|consen 365 ALSFPFFGDLLSLVGAFLFWPLTFILPCLMYLLI 398 (437)
T ss_pred HHhccccHhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 122335566666655443 46777777777665
No 61
>PTZ00206 amino acid transporter; Provisional
Probab=98.33 E-value=0.00074 Score=71.08 Aligned_cols=224 Identities=13% Similarity=0.130 Sum_probs=129.4
Q ss_pred ccccCCCCh-HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCchhhhhHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009714 34 PWLATPVQV-RVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLA 112 (528)
Q Consensus 34 ~~~~~~~G~-~~~l~~~l~~l~~~~~a~~~ael~~~~P~~~Gg~y~~~~~~~g~~~gf~~gw~~~l~~~~~~a~~~~~~~ 112 (528)
|...+.+|- ..++..++.++++......+.+.+.+ ++ .-...+-.++.+||...+++.....+.....+..+....+
T Consensus 82 P~Af~~~G~v~giillil~a~ls~ys~~lL~~~~~~-~~-~~sY~~la~~~~G~~g~~~v~~~~~~~~~G~cv~YlIiig 159 (467)
T PTZ00206 82 PSAANSSGLVMAMIYLIIITAMTIFSIYALGVAADK-TN-IRTYEGVARVLLGPWGSYYVAATRAFHGFSACVAYVISVG 159 (467)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CC-CCCHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555554 34444555555555555566666655 33 4566667777899999999998888877777778888888
Q ss_pred HHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 009714 113 SYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGA 192 (528)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ln~~g~~~~~~~~~i~~~~~i~~l~~~~i~~~ 192 (528)
+.+...+.... .+++..... .......++.+.+ .+-+.-.+.++..+++..+.....+...+..++...
T Consensus 160 d~l~~~l~~~~-----~~~~~~~~~----~~r~~~~~i~~~i--~lPLs~~r~i~~L~~~S~i~~~~i~~~vi~ivi~~~ 228 (467)
T PTZ00206 160 DILSATLKGTN-----APDFLKQKS----GNRLLTSLMWLCF--MLPLVIPRHIDSLRYVSTIAVSFMVYLVIVIVVHSC 228 (467)
T ss_pred HHHHHHhccCC-----ccchhhhcc----CcEEeeeehhhhH--hhhcccccchHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 87776654211 111110000 0000000111111 122222345566665544443332222222222222
Q ss_pred ccccccCCC----------C--CCCCChHHHHHHHHHHHHhhhhhHHHhhhhhhhcCCC-CchhHHHHHHHHHHHHHHHH
Q 009714 193 FEVDVSNWS----------P--FAPNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQ-RDLPIGILGSLLICAALYVG 259 (528)
Q Consensus 193 ~~~~~~~~~----------~--~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~k~p~-k~ip~ai~~s~~~~~i~y~l 259 (528)
.+..+++.+ + .++. ......++....|+|.+.......-+|+|||+ |+..+.+..+..++.++|.+
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~f~~-~~~~~~algi~~faF~~h~~~~~i~~~M~~~t~~~~~~v~~~s~~i~~~lY~~ 307 (467)
T PTZ00206 229 MNGLPENIKNVSVGKDDNAEIILFNS-GNRAIEGLGVFIFAYVFQITAYEVYMDMTNRSVGKFVLASTIAMGMCFTMYVL 307 (467)
T ss_pred cccCcccccccccCCCCCCceEEecC-chHHHhhhhHHHhhhhhhhhhHHHHHhhcccchhHHHHHHHHHHHHHHHHHHH
Confidence 111111110 0 1111 12577888999999999999999999999974 78889999999999999999
Q ss_pred HHHHHHhccccc
Q 009714 260 VSLVLTGMVPYK 271 (528)
Q Consensus 260 ~~~~~~~~~~~~ 271 (528)
..+.-....+++
T Consensus 308 ~G~~GYl~fG~~ 319 (467)
T PTZ00206 308 TAFFGYMDFGRN 319 (467)
T ss_pred HHHhhhhccccc
Confidence 988877766643
No 62
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=98.33 E-value=0.00022 Score=72.41 Aligned_cols=319 Identities=13% Similarity=0.121 Sum_probs=170.0
Q ss_pred ccccCCCCh--HHHHHHHHHHHHHHH---HHHHHHHHhccCCCCC------------CchhhhhHHHhchhHHHHHHHHH
Q 009714 34 PWLATPVQV--RVTISFLLAGAASVL---NALCYAELASRFPAVV------------GGAYLYAYTAFNELTAFLVFAQL 96 (528)
Q Consensus 34 ~~~~~~~G~--~~~l~~~l~~l~~~~---~a~~~ael~~~~P~~~------------Gg~y~~~~~~~g~~~gf~~gw~~ 96 (528)
|..-+.+|- +.+...+++.+...+ ..-+-.+++++.-+ + -+.|.| -|-+||...+++-...
T Consensus 69 P~AFk~sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~-~~~~y~~~~~~a~~~~~~~-~r~~g~~~r~~V~~~L 146 (449)
T KOG1304|consen 69 PLAFKNSGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRG-PSLDYAETAESAMEGGPGW-LRKYGPAARFVVNFFL 146 (449)
T ss_pred hHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-ccccHHHHHHHHHcCCcHH-HHhhcHHHHHHHHHHH
Confidence 444445554 344444444444333 45555666666422 1 122224 6668888999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHH-hhhhHHHHHHHH
Q 009714 97 MLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLC-WGVGESSVLNSC 175 (528)
Q Consensus 97 ~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ln~-~g~~~~~~~~~i 175 (528)
.+.+.-.+..+....++-+..+.+.. ... .....+...+.......+|. +..|...-+..+
T Consensus 147 ~i~QlGfc~vY~VFva~nl~~i~~~~-----~~~-------------~~s~~~~i~~~~~~~lll~~Ir~Lk~Lsp~Sl~ 208 (449)
T KOG1304|consen 147 VITQLGFCCVYLVFVATNLKQIVDEH-----SPG-------------VLSVRLYILIQLPPLLLLNLIRNLKILSPFSLF 208 (449)
T ss_pred HHHHhchhhEEeeeHHhhHHHHHhcc-----CCC-------------CccHHHHHHHHHHHHHHHHHHHhhHHhhHHHHH
Confidence 88888888888888888888877610 001 11122233333333333333 444554444444
Q ss_pred HHHHHHHHHHHHHhhhcccc-cccCCCCCCCCChHHHHHHHHHHHHhhhhhHHHhhhhhhhcCCCCchh---HHHHHHHH
Q 009714 176 MTVVKVIIVIVVIFAGAFEV-DVSNWSPFAPNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLP---IGILGSLL 251 (528)
Q Consensus 176 ~~~~~i~~l~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~k~p~k~ip---~ai~~s~~ 251 (528)
..++.++.+++...-.+... +.+....+ .++.++...+.+++|+|.|.-.+--+=+++|+| ++.| +.+-.++.
T Consensus 209 Anv~~~~g~~ii~~y~~~~~~~~~~~~~~--~~~~~~~lf~GtaifafEGig~VLPlEn~Mk~P-~~F~g~~gVLn~~M~ 285 (449)
T KOG1304|consen 209 ANVFILVGLAIIMYYLVQDLPPTSDLPAV--TGWSGLPLFFGTAIFAFEGIGMVLPLENSMKKP-QKFPGPFGVLNLGMG 285 (449)
T ss_pred HHHHHHHHHHHHHHHHHhccCCccccccc--cchhhhHHHHHHHHHHhccceEEEehhhcccCh-hhcCCccchHHHHHH
Confidence 44444444444333222221 11222222 236678888889999999999999999999999 5677 89999999
Q ss_pred HHHHHHHHHHHHHHhccccccCCCCcHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCCCCchhh
Q 009714 252 ICAALYVGVSLVLTGMVPYKFLDEDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIF 331 (528)
Q Consensus 252 ~~~i~y~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~~ 331 (528)
++.++|+..-+.-....++|.-++-. -+....+....+-+...++.+-+.--.++-.-++++.- +.+.+
T Consensus 286 ~V~~ly~~~Gf~GYl~fG~~v~~sIT------LNLP~~~l~~~Vkl~~ai~I~ls~pLQ~yv~~eIi~~~-----i~~k~ 354 (449)
T KOG1304|consen 286 IVTLLYIFLGFFGYLAFGDDVKGSIT------LNLPQEILSQTVKLLLAIAIFLTYPLQFYVPIEIIEPG-----IRKKF 354 (449)
T ss_pred HHHHHHHHHHHHHHhhccccccceEE------ecCCccHHHHHHHHHHHHHHHHcCchhhhhhHHHHHHh-----HHHhc
Confidence 99999998888776666654332210 01111222223333333333333333444555555542 22222
Q ss_pred hhhcCCcc-cchHHHHHHHHHHHHHHH-hhCHHHHHHHHHHHH--HHHHHHHHHHHHhhhh
Q 009714 332 AKVHPKRH-TPVHSQVWVGIVAGILAG-LFNVRVLSHILSVGT--LTGYSVVSACVIALRW 388 (528)
Q Consensus 332 ~~~n~r~~-~P~~a~l~~~~i~~~~~~-~~~~~~l~~~~~~~~--l~~y~~~~~~~~~~r~ 388 (528)
++ + |.+ .++.-=....+++..+.. ..+++.++++.+... .+.++++..--+...+
T Consensus 355 ~~-~-~~~~~~~~~R~~lVllt~~iA~~iPnL~~fisLVGs~~~s~L~li~P~liel~~~~ 413 (449)
T KOG1304|consen 355 SE-N-RKKLLEYALRVFLVLLTFLIAVAVPNLALFISLVGSVSCSLLALIFPPLIELITFY 413 (449)
T ss_pred Cc-c-hhHHHHHHHHHHHHHHHHHHHHHCCcHHhhHHHHHHHHHHHHHHHccHHHHHHHhc
Confidence 21 1 100 111111112222222222 457888888776655 4566666555444443
No 63
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=98.27 E-value=0.0027 Score=64.96 Aligned_cols=215 Identities=15% Similarity=0.127 Sum_probs=125.2
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCC---CCCCCh-HHHHHH----HHH
Q 009714 146 SINILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSP---FAPNGF-KEILTG----ATV 217 (528)
Q Consensus 146 ~~~l~~~~~~~~~~~ln~~g~~~~~~~~~i~~~~~i~~l~~~~i~~~~~~~~~~~~~---~~~~~~-~~~~~~----~~~ 217 (528)
...+..+++..+...+....-|...++-++++-+.++.++++++.++.+...+...+ +.++.+ .++..+ =..
T Consensus 117 ~~~ifs~iFF~i~~~l~~~p~kivd~iGk~LTP~LL~~l~ilii~~i~~p~g~~~~~~~~y~~~~f~~Gf~eGY~TMD~l 196 (427)
T PF05525_consen 117 SLLIFSIIFFAITYLLSLNPSKIVDRIGKFLTPILLILLAILIIKGIFSPIGPPQAPSGAYASNPFFKGFLEGYQTMDAL 196 (427)
T ss_pred chhhhhHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhhhhHHHHHHHHHHhhhhHH
Confidence 344577788888888999999999999999999999999998888887643222211 111111 111111 122
Q ss_pred HHHhhhhhHHHhhhhhhhcCCCCchhHHHHHHHHHHHHH----HHHHHHHHHhcccc--ccCCCCcHHHHHHHHcChhHH
Q 009714 218 VFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAAL----YVGVSLVLTGMVPY--KFLDEDAPLSDAFASRGLKYV 291 (528)
Q Consensus 218 ~~~~f~G~e~~~~~a~E~k~p~k~ip~ai~~s~~~~~i~----y~l~~~~~~~~~~~--~~~~~~~p~~~~~~~~~~~~~ 291 (528)
+...|...-..+--....||+ |+..|....+-++.+++ |......=....+. ++.+..+.+.++.++..|+.+
T Consensus 197 aal~Fg~iIi~~i~~~g~~~~-k~~~~~~~~ag~ia~~lL~~IY~gL~~lGa~~~~~~~~~~~g~~lL~~i~~~~~G~~G 275 (427)
T PF05525_consen 197 AALAFGIIIINAIRQKGYKDK-KEIKKYTIKAGLIAGILLALIYGGLAYLGATSSGSFPDDINGAELLSQIANHLFGSAG 275 (427)
T ss_pred HHHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcccccCCCCHHHHHHHHHHHHcChhH
Confidence 344444443334444444444 45555555554444443 43333322212111 122233566777888889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCCCCchhhhhhcCCcccchHHHHHHHHHHHHHHHhhCHHHHHHHHHHH
Q 009714 292 SVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLFNVRVLSHILSVG 371 (528)
Q Consensus 292 ~~i~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~~~~~n~r~~~P~~a~l~~~~i~~~~~~~~~~~~l~~~~~~~ 371 (528)
..++.+...++++++..+...+.+..... ..| +.+++...+...+........+++.+.++..=.
T Consensus 276 ~~ll~iiv~lACLTTaIGL~~a~a~yf~~-------------~~~--kisY~~~v~i~~i~S~~ian~Gl~~Ii~~s~Pi 340 (427)
T PF05525_consen 276 QILLGIIVFLACLTTAIGLISACAEYFSE-------------LFP--KISYKVWVIIFTIFSFIIANLGLDQIIKISVPI 340 (427)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------Hhc--ccChHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 99999999999999999888888875544 332 344444333333333333444667777665544
Q ss_pred HHHHH
Q 009714 372 TLTGY 376 (528)
Q Consensus 372 ~l~~y 376 (528)
..+.|
T Consensus 341 L~~iY 345 (427)
T PF05525_consen 341 LMFIY 345 (427)
T ss_pred HHHHh
Confidence 44444
No 64
>PRK11017 codB cytosine permease; Provisional
Probab=98.11 E-value=0.017 Score=59.57 Aligned_cols=184 Identities=12% Similarity=0.069 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCchhhhhHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 009714 43 RVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELF 122 (528)
Q Consensus 43 ~~~l~~~l~~l~~~~~a~~~ael~~~~P~~~Gg~y~~~~~~~g~~~gf~~gw~~~l~~~~~~a~~~~~~~~~~~~~~~~~ 122 (528)
.++++.+++.++........+..+.+.- =......+..||.+-+.+.+...++..+...+.+....+..+....+.
T Consensus 43 ~ai~aiilG~~i~~~~~~l~~~~G~k~G---~~~~v~sR~~FG~~Gs~l~~~~~~i~~igW~av~~~~~~~~l~~~~~~- 118 (404)
T PRK11017 43 DFLLAVLIGNLLLGIYTAALGYIGAKTG---LSTHLLARFSFGEKGSWLPSLLLGFTQVGWFGVGVAMFAIPVVKATGL- 118 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccC---cCHHHHHHHHhchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCC-
Confidence 6777777777666665555555554432 256667777899887777766666655555555555554444433210
Q ss_pred ccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhccccc-ccCCC
Q 009714 123 PFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVD-VSNWS 201 (528)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ln~~g~~~~~~~~~i~~~~~i~~l~~~~i~~~~~~~-~~~~~ 201 (528)
+.. ...+++.++.......|.|...+++++......+..+...+....+.+ .+...
T Consensus 119 -------~~~----------------~~~~i~~~l~~~~~~~G~~~i~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~~ 175 (404)
T PRK11017 119 -------DIN----------------LLIVLSGLLMTVTAYFGISALTILSRIAVPAIALLGGYSVWLAVNDVGGLDGLK 175 (404)
T ss_pred -------CHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhh
Confidence 110 123334455566667888888999988877766655544333322211 11111
Q ss_pred CCCCCChHHHHHHHHHHHHh-hhhhHHHhhhhhhhcCCCCchhHHHHHHHHHHH
Q 009714 202 PFAPNGFKEILTGATVVFFA-YVGFDAVANSAEESKKPQRDLPIGILGSLLICA 254 (528)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~-f~G~e~~~~~a~E~k~p~k~ip~ai~~s~~~~~ 254 (528)
...|.+...++.++....-. ..+.-..+..+...|+++ +.-.+...+..+..
T Consensus 176 ~~~~~~~~~~~~a~~~~~g~~~~~~~~~~DysRy~k~~~-~~~~~~~lg~~i~~ 228 (404)
T PRK11017 176 AIVPAEPLDFSAALTLVVGSFISGGTLTADFVRFGRSAK-IAVLATMVAFFLGN 228 (404)
T ss_pred cCCCCCcccHHHHHHHHHHHHHHhHhcCCChHhhccCcc-ceeehhHHHHHHHH
Confidence 11122222444444332222 344455667777778764 43345555544433
No 65
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=98.10 E-value=0.018 Score=59.27 Aligned_cols=388 Identities=16% Similarity=0.054 Sum_probs=187.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCchhhhhHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-h
Q 009714 43 RVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILE-L 121 (528)
Q Consensus 43 ~~~l~~~l~~l~~~~~a~~~ael~~~~P~~~Gg~y~~~~~~~g~~~gf~~gw~~~l~~~~~~a~~~~~~~~~~~~~~~-~ 121 (528)
.++++.+++-++....+..-+..+.++-- ..-.-.+..||-+-+-.-...-.+.-+..-..++...++.++.++. .
T Consensus 75 qallai~vG~~iv~i~m~Lng~~G~~~gI---pFpv~~RaSFGi~Ga~~p~l~R~i~A~~WyGvqty~Gg~av~llL~~i 151 (497)
T COG1953 75 QALLAILVGNLIVAIFMVLNGHAGSKYGI---PFPVLSRASFGIYGANFPALIRAIVAIVWYGVQTYAGGLAVNLLLGSI 151 (497)
T ss_pred HHHHHHHHHHHHHHHHHHhccCcccccCC---CchHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Confidence 67777777777766665555544444322 3334666778865555544444444444455666666666666554 2
Q ss_pred cccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCC
Q 009714 122 FPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWS 201 (528)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ln~~g~~~~~~~~~i~~~~~i~~l~~~~i~~~~~~~~~~~~ 201 (528)
+|.+....+.. +.++.++...+..+++-++...+-..|.+..+|++.....+..+..+.+.+....+.+..+..
T Consensus 152 ~~~~~~~~~~~------~~lg~tt~~~i~F~ifW~l~~l~~~~g~~~Ir~~~~~a~p~~~~~~~gl~Iw~~~~a~g~~~~ 225 (497)
T COG1953 152 FPSLLIPNTLS------PLLGLTTLELICFFIFWVLQLLVLFKGMESIRKFETWAGPLVYIAMLGLAIWALVKAGGSSIL 225 (497)
T ss_pred ccccccCCccc------cccCCcHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhchHHHHHHHHHHHHHHHhcCCcCcc
Confidence 33322111101 112223334444455555666667789999999999999988888888888766654443221
Q ss_pred CCC----CCC---hHHHHHHHHHHHHhhhhh----HHHhhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 009714 202 PFA----PNG---FKEILTGATVVFFAYVGF----DAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPY 270 (528)
Q Consensus 202 ~~~----~~~---~~~~~~~~~~~~~~f~G~----e~~~~~a~E~k~p~k~ip~ai~~s~~~~~i~y~l~~~~~~~~~~~ 270 (528)
... +.+ ...++.+. ......| -..+..+.+.|+| |+.-++-..++-+...+..+..+......-
T Consensus 226 ~~~p~~~~~~~~~~w~~~~~~---~~~v~~~Atl~lN~~DFsRfa~s~-~~~~~gq~~gLPv~~~l~~ligvv~tsa~~- 300 (497)
T COG1953 226 GELPAGTVSGSNSSWAFLAGI---AAWVGFWATLALNIPDFTRFAKSQ-KAQIWGQLVGLPVNFALFSLIGVVVTSASY- 300 (497)
T ss_pred ccCCCCCCCcchhHHHHHHHH---HHHHHHHHHHhcCCchhhcccCCh-hhhhhccchhhhHHHHHHHHHHhhHHHHHH-
Confidence 111 111 12232222 1222222 3345556666665 455555555555555554444444332211
Q ss_pred ccCCC--CcHHHHHHHHcChhHHHH-HHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCCCCchhhhhhcCCcccchHHHHH
Q 009714 271 KFLDE--DAPLSDAFASRGLKYVSV-LISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVW 347 (528)
Q Consensus 271 ~~~~~--~~p~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~~~~~n~r~~~P~~a~l~ 347 (528)
...++ .+|. |...+........ +..+...++..++..+.-.-++-. .+ .+.+||.+.. |++ -++
T Consensus 301 ~lyG~~~w~P~-di~~~~~~~~~~~fl~~l~~~iati~~Ni~aN~vsp~~--D~--s~l~Pk~in~---krg-----~li 367 (497)
T COG1953 301 ILYGETIWDPL-DIVARFLSGFYAAFLAGLTFAVATISTNIAANIVSPGY--DL--SALFPKYINI---KRG-----GLI 367 (497)
T ss_pred HhhCcccCCHH-HHHHHhccchHHHHHHHHHHHHHHHhhhHHhccCChHH--HH--HHhcccccch---hhh-----HHH
Confidence 11111 2343 3444443333332 555555555555543322111111 11 1567776653 322 344
Q ss_pred HHHHHHHHHHhh---CHH-HHHHHHHHHHHH--HHHHHHHHHHhhhhcCCCCCCCc--ccc---cc--cchhhHHHHHHH
Q 009714 348 VGIVAGILAGLF---NVR-VLSHILSVGTLT--GYSVVSACVIALRWKDRTSRNDS--SRL---TS--AWRQGVICLIII 414 (528)
Q Consensus 348 ~~~i~~~~~~~~---~~~-~l~~~~~~~~l~--~y~~~~~~~~~~r~~~~~~~~~~--~~~---~~--~~~~~i~~~~~~ 414 (528)
..+++..+.-+- +.+ ....+.+.+..+ ...+.+.-++..||+|.+..+-+ ++. .+ .|+..+..++..
T Consensus 368 aA~ial~~~PW~l~~s~s~f~~~L~~yg~~LgpiaGVmiaDyflirk~~~~v~~ly~~~G~y~y~~G~N~rA~~A~~~G~ 447 (497)
T COG1953 368 AAIIALLICPWNLLESSSSFTTFLGSYGVFLGPIAGVMIADYFLVRKGRLNLDELYTEPGEYYYYGGWNWRAFAAYLCGV 447 (497)
T ss_pred HHHHHHHHcChHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccChHHhcCCCCCeEEecCcCHHHHHHHHHhh
Confidence 455544433322 212 222233334433 34455667777777775442111 111 11 122222222333
Q ss_pred HHhhhh--cchhhccchhHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 009714 415 ACCGFG--AGLFYRINASYILLIVAVVIAVLASAMLCLRHGYSDP 457 (528)
Q Consensus 415 ~~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 457 (528)
...... .......+..+..+.+..+++...++.++.+++.++.
T Consensus 448 ~~~l~Gv~~~~~~~~~~~~~~wF~G~~ia~~iY~~L~~~~p~~~~ 492 (497)
T COG1953 448 APSLPGVGKVPPGLPPLYYYGWFVGVLLAFLIYWGLCKFFPFKRT 492 (497)
T ss_pred hccccchhcCCcccchhhhhhHHHHHHHHHHHHHHHHhhcCCCCC
Confidence 322222 1111122334566677777777777777777666543
No 66
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=97.94 E-value=0.042 Score=58.25 Aligned_cols=232 Identities=13% Similarity=0.126 Sum_probs=119.5
Q ss_pred HHHHHHHHhccCCCCCCchhhhhHHHhchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCC
Q 009714 58 NALCYAELASRFPAVVGGAYLYAYTAFNEL-TAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHG 136 (528)
Q Consensus 58 ~a~~~ael~~~~P~~~Gg~y~~~~~~~g~~-~gf~~gw~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (528)
.+.-+.++.++.. .=...+|.++-+|+. .....+....+......+....+.+..++.+++. +.+.
T Consensus 94 ~~~~~~~~~r~~~--~~T~~e~l~~Ryg~~~~~~~~~i~~~~~~~~~~~~ql~~~g~~l~~~~gi--------~~~~--- 160 (483)
T PRK09442 94 LGKKFAILARKYN--AVTLNDMLRARYQSRLLVWLASLSLLVFFFAAMTAQFIGGARLLETATGI--------SYET--- 160 (483)
T ss_pred HHHHHHHHHHHcC--CccHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--------CHHH---
Confidence 4444556666653 468888999988854 5666666555555556667777777777766532 1111
Q ss_pred CccccccchhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhccc-------------ccccCCCCC
Q 009714 137 GEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFE-------------VDVSNWSPF 203 (528)
Q Consensus 137 ~~~~~~~~~~~~l~~~~~~~~~~~ln~~g~~~~~~~~~i~~~~~i~~l~~~~i~~~~~-------------~~~~~~~~~ 203 (528)
. +.+...+.....-.-|.|...+...+-..+.++..++..+..... .+++.+++.
T Consensus 161 ---------~---iii~~~iv~iYt~~GGl~av~~TD~iQ~~i~~~~~~vi~~~~~~~~gG~~~~~~~l~~~~~~~~~~~ 228 (483)
T PRK09442 161 ---------G---LLIFGITVALYTAFGGFRAVVLTDALQGIVMLVGTVILLIGVIHAGGGLENAVQTLQAIDPQLVTPQ 228 (483)
T ss_pred ---------H---HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHhcCccccCCC
Confidence 1 111122223344446677766655555554444433332221111 111112222
Q ss_pred CCCChH--HHHHH-HHHHHHhhhhhHHHhhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHH--Hh-ccccccCCCCc
Q 009714 204 APNGFK--EILTG-ATVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVL--TG-MVPYKFLDEDA 277 (528)
Q Consensus 204 ~~~~~~--~~~~~-~~~~~~~f~G~e~~~~~a~E~k~p~k~ip~ai~~s~~~~~i~y~l~~~~~--~~-~~~~~~~~~~~ 277 (528)
.+.++. ..... .........+.....+-.=..||+ |+..|+...+.+....++......- .. ..| +.-+++.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~g~~~~p~~~qR~~aaks~-~~a~~~~~~~~~~~~~~~~~~~~~G~~~~~~~p-~~~~~~~ 306 (483)
T PRK09442 229 GADDILSPPFMTSFWILVCFGVIGLPHTAVRCMSYKDS-KALHRGIIIGTIVVGFLMFGMHLAGALGRAVLP-DLTVPDK 306 (483)
T ss_pred CCCccccHHHHHHHHHHHHHHHhCCCHHHHHHHHcCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCCccc
Confidence 222211 11111 111122222332223333336665 7788888887766665554433321 11 223 2223455
Q ss_pred HHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 009714 278 PLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSR 316 (528)
Q Consensus 278 p~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR 316 (528)
.+.....+..+++...++..+.+.+..++..+.+.+.+-
T Consensus 307 ~~p~l~~~~lp~~l~gl~~a~~~aA~mST~~s~l~~~ss 345 (483)
T PRK09442 307 VIPTLMLKVLPPFAAGIFLAAPMAAIMSTVDSQLLQSSS 345 (483)
T ss_pred hHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777777788888888788888888777777655443
No 67
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=97.89 E-value=0.047 Score=57.19 Aligned_cols=203 Identities=10% Similarity=0.015 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCchhhhhHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 009714 43 RVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELF 122 (528)
Q Consensus 43 ~~~l~~~l~~l~~~~~a~~~ael~~~~P~~~Gg~y~~~~~~~g~~~gf~~gw~~~l~~~~~~a~~~~~~~~~~~~~~~~~ 122 (528)
.++++.+++.++........+..+.+.-. ......+..||.+-+.+.....++..+...+.++...++.+..+++..
T Consensus 48 ~ailai~lG~~i~~~~~~l~~~~G~r~Gl---~~~v~sR~~FG~~Gs~~~~~~~~i~~igW~av~~~~~g~al~~~l~~i 124 (442)
T TIGR00800 48 QSVIAIILGNLLGGIFVALNSRAGAKYGL---PFPVLSRASFGIYGSLLPSLLRIVMAIGWYGVQAWVGGLCVALMLDSI 124 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHhCC---CcchhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Confidence 56677777766666655555666655432 566788888998888888888888888888888888888877766531
Q ss_pred -ccccCCCCccccCCCccccccchhhhHHHHHHHHH-HH-HHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhccccc-cc
Q 009714 123 -PFFKENIPSWIGHGGEEFLGGTLSINILAPILLAL-LT-IVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVD-VS 198 (528)
Q Consensus 123 -~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~-~ln~~g~~~~~~~~~i~~~~~i~~l~~~~i~~~~~~~-~~ 198 (528)
+......++ ......+..++... .. ..-..|.|...+.+.......++.++..+.. ..+.+ ..
T Consensus 125 ~~~~~~~~~~------------~t~~~~~~~~i~~~l~~~~~~~~g~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~g~~ 191 (442)
T TIGR00800 125 FPGYLHLGNG------------MTTLELICFIIFWALVLVFLFFFGYKIRHLFEWLAVVPPFAAFGMLIWA-LSKAHGKG 191 (442)
T ss_pred cccccccCCc------------ccHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCCC
Confidence 211000000 00011223333222 22 2345566666665555554444444333322 11111 11
Q ss_pred C---CCC--CCCCChHHHHHHHHHHHHh-hhhhHHHhhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHH
Q 009714 199 N---WSP--FAPNGFKEILTGATVVFFA-YVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSL 262 (528)
Q Consensus 199 ~---~~~--~~~~~~~~~~~~~~~~~~~-f~G~e~~~~~a~E~k~p~k~ip~ai~~s~~~~~i~y~l~~~ 262 (528)
+ ..+ -.+.....++.++....-. ..+...++..+...|++ |+..++...+.....+...+...
T Consensus 192 ~~~~~~~~~~~~~~~~~f~~~~~~~~g~~~s~~~~~~DysRy~~~~-~~~~~~~~~~~~~~~~~~~~~g~ 260 (442)
T TIGR00800 192 PLGELTGTLHGSTGAWAFLYALSLVIGSFATWATNAPDFTRFGKSK-KTAIWGQFLALPGGFTLTCFFGI 260 (442)
T ss_pred ccccCCCCCCcchhHHHHHHHHHHHHHHHHHHHcCchhhhhhcCCc-cchHHHHHHHHHHHHHHHHHHHH
Confidence 1 111 1122334555555443322 23334566777777776 45555555555555444444333
No 68
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=97.84 E-value=0.03 Score=56.92 Aligned_cols=49 Identities=10% Similarity=0.070 Sum_probs=39.9
Q ss_pred CCCcHHHHHHHHcCh-hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhh
Q 009714 274 DEDAPLSDAFASRGL-KYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLG 322 (528)
Q Consensus 274 ~~~~p~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~a~a 322 (528)
.+.+...++++...| ++...++.++.+.+.+++..+...+.+|.+.+.-
T Consensus 236 ~~~~~~~~~L~~~~G~~~a~~lF~igl~~a~fss~i~~~~~~~~~~~~~~ 285 (358)
T PF01566_consen 236 ETAAQAAQALEPLLGSPWARYLFAIGLFAAGFSSSITATLAGAYVLADFL 285 (358)
T ss_pred hhHHHHHHHHHHhcCchHHHHhHHHHHHHHHHhhHHHhccccceehHhhh
Confidence 344567778888888 7999999999999999999988888888776654
No 69
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=97.80 E-value=1.5e-06 Score=90.09 Aligned_cols=332 Identities=11% Similarity=0.045 Sum_probs=169.5
Q ss_pred ccccCCCCh-HHHHHHHHHHHHHHHHHHHHHHHhccCCC--CCCchhhhhHHHhchhHHHHHHHHHHHHHHHHHHHHHHH
Q 009714 34 PWLATPVQV-RVTISFLLAGAASVLNALCYAELASRFPA--VVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARS 110 (528)
Q Consensus 34 ~~~~~~~G~-~~~l~~~l~~l~~~~~a~~~ael~~~~P~--~~Gg~y~~~~~~~g~~~gf~~gw~~~l~~~~~~a~~~~~ 110 (528)
|+....+|- ..++..++.++++......+.|.....|+ +.-..-+-.++.+||+.++.+.....+........+...
T Consensus 25 P~af~~~G~~~g~i~l~~~~~~s~~t~~~l~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~ 104 (409)
T PF01490_consen 25 PYAFAQSGWVLGIILLVLVALLSYYTMYLLVRAANAMPNGTGRRSYGDLARRAFGPKGKWFVDICIFIYLFGSCVAYLII 104 (409)
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccccccccccchheeccccccceeEEE
Confidence 444555554 45666677777777788888888887652 133444445778999888888776666554444444444
Q ss_pred HHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHHHHHHh
Q 009714 111 LASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLC-WGVGESSVLNSCMTVVKVIIVIVVIF 189 (528)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ln~-~g~~~~~~~~~i~~~~~i~~l~~~~i 189 (528)
.++.+..+.+..... ...+.. ...++...+..-+.. ...+..++.+.......+..+.....
T Consensus 105 ~~~~l~~~~~~~~~~-~~~~~~----------------~~~~i~~~i~~pls~~~~l~~l~~~s~~~~~~~~~~~~~~~~ 167 (409)
T PF01490_consen 105 IGDSLSSLIPSFFGD-LFISRY----------------VWIIIFALIVLPLSFLKNLKSLRYLSILGLFSIFYFIVIVVI 167 (409)
T ss_pred eeeeeeccccccccc-cccccc----------------ccccccccccccccccchhhHHHHHhhhhhhccceeeeeecc
Confidence 555554443211000 000000 011111122211221 22333333322222222211111111
Q ss_pred hhcc--cccccCCC---CCCCCChHHHHHHHHHHHHhhhhhHHHhhhhhhhcCCCC--chhHHHHHHHHHHHHHHHHHHH
Q 009714 190 AGAF--EVDVSNWS---PFAPNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQR--DLPIGILGSLLICAALYVGVSL 262 (528)
Q Consensus 190 ~~~~--~~~~~~~~---~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~k~p~k--~ip~ai~~s~~~~~i~y~l~~~ 262 (528)
.... ..+..+.. ...+.++.++..++....++|.+........+|+|||+| +..|+...+...+.++|.+...
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~~~~~~~~~~~~~~s~~~~~~~y~~~g~ 247 (409)
T PF01490_consen 168 YIISYGPGEPSGVPSPPVWPFISFSGFFSAFGIIIFAFSCHPNLPPIQSEMKDPSKFKKMKKVLSISMIICFIIYLLFGI 247 (409)
T ss_pred eeeeeecccccccccccccccchhhHHHHhhhhhhhhhhcccccceeeeeccCCccccccceeeeehhhhhhHHhhhhhh
Confidence 1111 11111111 112344568899999999999999999999999999864 4669999999999999999998
Q ss_pred HHHhccccccCCCCcHHHHHHHHcChh-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCC-----CCchhhhhhcC
Q 009714 263 VLTGMVPYKFLDEDAPLSDAFASRGLK-YVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDG-----LLPSIFAKVHP 336 (528)
Q Consensus 263 ~~~~~~~~~~~~~~~p~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg-----~lP~~~~~~n~ 336 (528)
.-....+++. ++ .+..+.... +...+..+...+....+..-..+...+.+...-++. ..++.-.
T Consensus 248 ~gy~~fg~~~-~~-----~il~n~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~~~~~~~~~~~~---- 317 (409)
T PF01490_consen 248 FGYLAFGDSV-QG-----NILLNLPNDDVLIIIARILLVISLLLSYPLQLFPARNSLENLLFKRAASSRDSPKNTP---- 317 (409)
T ss_pred cccceeeeee-cc-----hhhhcCCCcccccccccccchhhhhhccccccchhHhhhhhheecccccccccccccc----
Confidence 8776665432 11 222232222 233333444444444443334444455555544332 1111100
Q ss_pred CcccchHHH-HHHHHHHHHHH-HhhCHHHHHHHHHHHH--HHHHHHHHHHHHhhhhcCCC
Q 009714 337 KRHTPVHSQ-VWVGIVAGILA-GLFNVRVLSHILSVGT--LTGYSVVSACVIALRWKDRT 392 (528)
Q Consensus 337 r~~~P~~a~-l~~~~i~~~~~-~~~~~~~l~~~~~~~~--l~~y~~~~~~~~~~r~~~~~ 392 (528)
+.+..+... ....+++.++. ...+++.+.++.+... .++|.++.+..++.++++++
T Consensus 318 ~~~~~~~~~~~~~~~~~~~iA~~vp~~~~i~~l~Ga~~~~~i~fi~P~l~~~~~~~~~~~ 377 (409)
T PF01490_consen 318 SSRWLRYLIRIILVLLSFLIAIFVPNFGDIISLVGALFGSFISFILPALLYLKLFKRKRN 377 (409)
T ss_pred ccceeeeeeecchhhhhhhhhhhccchhhhhcccchHHHHhHHHHHHHHHHHHhhccccc
Confidence 101111111 11112222222 2236666666654433 57888998888887766543
No 70
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=97.69 E-value=0.11 Score=55.25 Aligned_cols=219 Identities=14% Similarity=0.088 Sum_probs=101.7
Q ss_pred CchhhhhHHHhch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHH
Q 009714 74 GGAYLYAYTAFNE---LTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINIL 150 (528)
Q Consensus 74 Gg~y~~~~~~~g~---~~gf~~gw~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 150 (528)
=..++|.++-+|+ ....+.+....+......+....+.+..++.+++. +.+. . +
T Consensus 104 ~T~~e~l~~Ryg~~~~~~~~~~ai~~~~~~~~~~~~~l~~~~~~l~~~~gi--------~~~~------------~---i 160 (487)
T TIGR02121 104 ITLPDFFENRFNDKSRLLRIISALIILVFFTIYTSSGLVAGGKLFESTFGL--------DYKT------------G---L 160 (487)
T ss_pred ccHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc--------cHHH------------H---H
Confidence 4578999999984 44444444444444445556666666666655431 1111 0 1
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhccc-------------ccccCCCCCCCCChHHHHHHHHH
Q 009714 151 APILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFE-------------VDVSNWSPFAPNGFKEILTGATV 217 (528)
Q Consensus 151 ~~~~~~~~~~ln~~g~~~~~~~~~i~~~~~i~~l~~~~i~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~ 217 (528)
.+...+.....-.-|.|...+...+=.++.++..++..+....+ .+++..+.+.+.++..+...+..
T Consensus 161 ii~~~i~~~Yt~~GGl~av~~TD~iQ~~i~~~~~~~v~~~~~~~~GG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (487)
T TIGR02121 161 LIGALIIVIYTFFGGFLAVSWTDFVQGLLMFFALVLVPIVALFNLGGFGETLSAVAAINPHLLDMFKGASVIAIISLLAW 240 (487)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhCccccCCCCCCCHHHHHHHHHH
Confidence 12223344445556677766655554444433332222221111 11122222222222222222111
Q ss_pred HHHhhhhhHHHhhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHHH-HHh-----ccccc-cCCCCcHHHHHHHHcChhH
Q 009714 218 VFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLV-LTG-----MVPYK-FLDEDAPLSDAFASRGLKY 290 (528)
Q Consensus 218 ~~~~f~G~e~~~~~a~E~k~p~k~ip~ai~~s~~~~~i~y~l~~~~-~~~-----~~~~~-~~~~~~p~~~~~~~~~~~~ 290 (528)
. ..+.|.....+-.=-.||+ |+..|+...+........+...+. ..+ ..|.. ..++|..+.....+..+++
T Consensus 241 ~-~g~~~~p~~~qR~~aaks~-k~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~p~~~~~~~d~~~~~~~~~~~p~~ 318 (487)
T TIGR02121 241 G-LGYFGQPHIIVRFMAIRSH-KELPKARRIGMSWMILSLLGAIAVGLTGIAYFNKNPHVELVDRETIFIVLSQILFHPW 318 (487)
T ss_pred H-HHhccchHHHHHHHhcCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccCCCcchhHHHHHHHhccHH
Confidence 1 1112222222212224554 677778776654332222111111 111 11211 1233555666666667777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 009714 291 VSVLISFGAVAGLTTTLLVGLYVQSRL 317 (528)
Q Consensus 291 ~~~i~~~~~~~~~~~~~~~~~~~~sR~ 317 (528)
..-++..+.+.+..++..+.+.+.+-.
T Consensus 319 l~gl~~a~ilaA~mST~~s~l~s~ss~ 345 (487)
T TIGR02121 319 IAGILLAAILAAIMSTISSQLLVSSSA 345 (487)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777788888888888877766643
No 71
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=97.68 E-value=0.11 Score=54.99 Aligned_cols=233 Identities=12% Similarity=0.073 Sum_probs=118.1
Q ss_pred HHHHHHHhccCCCCCCchhhhhHHHhch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCC
Q 009714 59 ALCYAELASRFPAVVGGAYLYAYTAFNE-LTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGG 137 (528)
Q Consensus 59 a~~~ael~~~~P~~~Gg~y~~~~~~~g~-~~gf~~gw~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (528)
+.-+.+..++.. .=..++|.++-+|+ ......+....+...........+.+..++.+++. |.+.
T Consensus 94 ~~~~~~~~~~~~--~~T~~e~l~~Ryg~~~~~~~~~i~~i~~~~~~~~~ql~g~g~~l~~~~gi--------~~~~---- 159 (471)
T TIGR02119 94 GKKFAIISRKYN--AITINDVLKARYNNKFLVWLSSISLLVFFFSAMVAQFIGGARLIESLTGL--------SYLT---- 159 (471)
T ss_pred HHHHHHHHHHcC--CccHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--------CHHH----
Confidence 334555555553 46888999999995 44555555554444444555566666666655432 2111
Q ss_pred ccccccchhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccc-------------cccCCCCCC
Q 009714 138 EEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEV-------------DVSNWSPFA 204 (528)
Q Consensus 138 ~~~~~~~~~~~l~~~~~~~~~~~ln~~g~~~~~~~~~i~~~~~i~~l~~~~i~~~~~~-------------~~~~~~~~~ 204 (528)
. +.+...+.....-.-|.|...+.+.+-..+.++..++..+....+. +++.++++.
T Consensus 160 --------~---iii~~~iv~iYt~~GG~~av~~td~iQ~~v~~~~~~~~~~~~l~~~gG~~~~~~~l~~~~~~~~~~~~ 228 (471)
T TIGR02119 160 --------A---LFIFSSSVLIYTTFGGFRAVALTDAIQGIVMFTGTTILLIAVIKAGGGVEKIMEKLKDIDPNLITPFG 228 (471)
T ss_pred --------H---HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhcCccccCCCC
Confidence 0 1112222344444567777777666655555444333332222111 111112222
Q ss_pred CCChH--HHHHHH-HHHHHhhhhhHHHhhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHh--ccccccCCCCcHH
Q 009714 205 PNGFK--EILTGA-TVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTG--MVPYKFLDEDAPL 279 (528)
Q Consensus 205 ~~~~~--~~~~~~-~~~~~~f~G~e~~~~~a~E~k~p~k~ip~ai~~s~~~~~i~y~l~~~~~~~--~~~~~~~~~~~p~ 279 (528)
++++. .+.... ....+...+.+...+-.-..||+ |+..|+...+.+....++....+.-.. ...++..++|..+
T Consensus 229 ~~~~~~~~~~~~~~~~~~~g~~~~p~~~~R~~aak~~-~~a~~~~~~~~~~~~~~~~~~~~~G~~a~~~~p~~~~~d~~~ 307 (471)
T TIGR02119 229 GDGGLTKPFVASFWILVGIGVIGLPQTAVRCMSYKDS-KAMHRAMIIGTIVVGIIMLGMHLAGVLGRAVIPDLTVPDKVI 307 (471)
T ss_pred CCcchhhhHHHHHHHHHHHHHhCchHHHHHHHhcCCH-HHHhhhHhHHHHHHHHHHHHHHHHHHhhhhhccCCCCccchH
Confidence 22211 111111 11112222333333344556665 788888888876655554443332111 1122222345666
Q ss_pred HHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 009714 280 SDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRL 317 (528)
Q Consensus 280 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~ 317 (528)
+....+..+++...++..+.+.+..++..+.+.+.+-.
T Consensus 308 p~~~~~~lp~~~~gl~~a~llaA~mST~~s~l~~~ss~ 345 (471)
T TIGR02119 308 PLLAIKVLPPILAGIFLAAPMAAIMSTVNSLLLQSSST 345 (471)
T ss_pred HHHHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67666777778777777777888888777776665543
No 72
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=97.53 E-value=0.15 Score=52.52 Aligned_cols=171 Identities=12% Similarity=0.034 Sum_probs=99.9
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCC---CCC----CChH---HHHHHH
Q 009714 146 SINILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSP---FAP----NGFK---EILTGA 215 (528)
Q Consensus 146 ~~~l~~~~~~~~~~~ln~~g~~~~~~~~~i~~~~~i~~l~~~~i~~~~~~~~~~~~~---~~~----~~~~---~~~~~~ 215 (528)
...+..+++..+...+....-|...++-++++-+.++.++++++.++.+...+...+ +.. +|+. +.+-++
T Consensus 121 ~~~ifs~iFF~i~~~l~l~p~klvd~iGK~LTP~LL~~l~~lii~~i~~p~g~~~~~~~~y~~~~f~~Gf~eGY~TMDal 200 (439)
T PRK15433 121 PLFIYSLVYFAIVILVSLYPGKLLDTVGNFLAPLKIIALVILSVAAIVWPAGSISTATEAYQNAAFSNGFVNGYLTMDTL 200 (439)
T ss_pred HHHHHHHHHHHHHHHHHcChhhHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcchhhhhhhHHHHHHhhHHHHHHH
Confidence 334577788888888888999999999999999999988888888877632211111 101 1110 222222
Q ss_pred HHHHHhhhhhHHHhhhhhhhcCCCCchhHHHHHHHHHHH----HHHHHHHHHHHhccc-cccC-CCCcHHHHHHHHcChh
Q 009714 216 TVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICA----ALYVGVSLVLTGMVP-YKFL-DEDAPLSDAFASRGLK 289 (528)
Q Consensus 216 ~~~~~~f~G~e~~~~~a~E~k~p~k~ip~ai~~s~~~~~----i~y~l~~~~~~~~~~-~~~~-~~~~p~~~~~~~~~~~ 289 (528)
+...|...-..+--....||+ |++-|....+-++.+ ++|......=....+ .++. +..+-.....+...++
T Consensus 201 --aal~Fg~iii~~i~~~G~~~~-~~~~k~t~~ag~ia~~~L~~vY~gL~~lGa~s~~~~~~~~~g~~il~~~~~~~~G~ 277 (439)
T PRK15433 201 --GAMVFGIVIVNAARSRGVTEA-RLLTRYTVWAGLMAGVGLTLLYLALFRLGSDSASLVDQSANGAAILHAYVQHTFGG 277 (439)
T ss_pred --HHHHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCCcHhHHHHHHHHHHhCH
Confidence 333333333333334445554 444454444444433 334443333222211 1111 1122334455666788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 009714 290 YVSVLISFGAVAGLTTTLLVGLYVQSRLYL 319 (528)
Q Consensus 290 ~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~ 319 (528)
+...++.+....+++++..+...+.++...
T Consensus 278 ~G~~ll~iiv~lACLTTaIGLi~a~a~~f~ 307 (439)
T PRK15433 278 GGSFLLAALIFIACLVTAVGLTCACAEFFA 307 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999888887543
No 73
>PF02705 K_trans: K+ potassium transporter; InterPro: IPR003855 This is a family of K+ potassium transporters that are conserved across phyla, having both bacterial (KUP) [], yeast (HAK) [], and plant (AtKT) [] sequences as members.; GO: 0015079 potassium ion transmembrane transporter activity, 0071805 potassium ion transmembrane transport, 0016020 membrane
Probab=97.51 E-value=0.14 Score=53.78 Aligned_cols=225 Identities=12% Similarity=0.079 Sum_probs=119.9
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccc--cccCCCCCCC---------CChHHHHHHHHH
Q 009714 149 ILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEV--DVSNWSPFAP---------NGFKEILTGATV 217 (528)
Q Consensus 149 l~~~~~~~~~~~ln~~g~~~~~~~~~i~~~~~i~~l~~~~i~~~~~~--~~~~~~~~~~---------~~~~~~~~~~~~ 217 (528)
.+++++++.++.+.-+|....++. +.-+.++=.+.....|+.+. +++-...+.| ++..++ ..+..
T Consensus 134 ~it~~ILv~LF~iQ~~GT~~ig~~---FgPim~~WF~~l~~~G~~~I~~~p~Vl~A~nP~yai~f~~~~~~~~~-~~LG~ 209 (534)
T PF02705_consen 134 PITIAILVGLFAIQRFGTAKIGKL---FGPIMLLWFLTLGVLGLYNIIQHPEVLKALNPYYAIRFFIRNGWIGF-FVLGA 209 (534)
T ss_pred hHHHHHHHHHHHHHhhhhhHHHHH---HhHHHHHHHHHHHHHHHHHHhhCHHHHHHhCHHHHHHHHHHcCCchh-hhcch
Confidence 478888888899999998777775 44343333333333443321 1222222222 232222 23445
Q ss_pred HHHhhhhhHHHhhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCcHHHHHHHHcChhHHHHHHHH
Q 009714 218 VFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAFASRGLKYVSVLISF 297 (528)
Q Consensus 218 ~~~~f~G~e~~~~~a~E~k~p~k~ip~ai~~s~~~~~i~y~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~i~~~ 297 (528)
.+.+.+|.|+.-. +-=+-.+|.+.++-..-+.-+.++.-+.+-+....-|.+ .++|+.... .+++.+-+.+
T Consensus 210 V~L~~TGaEALyA--DmGHfg~~~Ir~aw~~~V~PaL~LnY~GQgA~ll~~p~~---~~npFf~~~----P~~~~~p~~i 280 (534)
T PF02705_consen 210 VFLCVTGAEALYA--DMGHFGRKPIRIAWFFLVFPALLLNYFGQGALLLSHPEA---VSNPFFLLI----PEWLLWPMVI 280 (534)
T ss_pred HHHHHhhHHHHHh--hhccccchhhhhhHHHHHHHHHHHHHccHHHHHHcCcch---hhhHHHHHh----HHHHHHHHHH
Confidence 7788999997643 222334667766655544444444444444444433321 245554333 3355555555
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHhhcCCCCch-hhhhhcCCc-c---cchHHHHHHHHHHHH-HHHhhCHHHHHHHHHHH
Q 009714 298 GAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPS-IFAKVHPKR-H---TPVHSQVWVGIVAGI-LAGLFNVRVLSHILSVG 371 (528)
Q Consensus 298 ~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~-~~~~~n~r~-~---~P~~a~l~~~~i~~~-~~~~~~~~~l~~~~~~~ 371 (528)
.+.++..-+..+.+.++=-+..+.-+-|.+|+ ...+++++. | .|..- ++..+.+.. ...+-+.+.+.+..+++
T Consensus 281 lAtlAtIIASQA~Isg~FSl~~Qai~Lg~~Pr~~I~hTS~~~~GQIYIP~vN-w~L~i~~i~vvl~F~~S~~la~AYGiA 359 (534)
T PF02705_consen 281 LATLATIIASQAVISGAFSLTRQAIQLGYFPRLKIVHTSEKEEGQIYIPEVN-WLLMIGVIAVVLGFRSSSNLAAAYGIA 359 (534)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEECCcccCCcEechHHH-HHHHHHHHhhheEECChHHHHHHHHHH
Confidence 55555555555666666667777788899994 334444333 2 45433 222222222 23334778888888888
Q ss_pred HHHHHHHHHH-HHHhhh
Q 009714 372 TLTGYSVVSA-CVIALR 387 (528)
Q Consensus 372 ~l~~y~~~~~-~~~~~r 387 (528)
......++.. ..+.+|
T Consensus 360 Vt~tM~iTT~L~~~v~~ 376 (534)
T PF02705_consen 360 VTGTMLITTILLFLVMR 376 (534)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 8765555433 333344
No 74
>PRK00701 manganese transport protein MntH; Reviewed
Probab=97.50 E-value=0.17 Score=52.71 Aligned_cols=65 Identities=14% Similarity=0.077 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCCC-chhhhhHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009714 49 LLAGAASVLNALCYAELASRFPAVVG-GAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLAS 113 (528)
Q Consensus 49 ~l~~l~~~~~a~~~ael~~~~P~~~G-g~y~~~~~~~g~~~gf~~gw~~~l~~~~~~a~~~~~~~~ 113 (528)
+..-+++.+....+.|++.+.-...| +..+-.++-+|+.+++.......++.......+..+.+.
T Consensus 68 LW~llls~~~~~~~Q~~~~RlgivTG~~l~~~ir~~~~~~~~~~~~~~~~l~~~~~~~~e~~G~a~ 133 (439)
T PRK00701 68 LWVILLSNLMAMLLQSLSAKLGIATGRDLAQACRDRYPRPVVWFLWIQAELAIMATDLAEVIGAAI 133 (439)
T ss_pred HHHHHHHHHHHHHHHHHHhHhhhhcCCCHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555566677777777665344 777888888998887765444434443333334443333
No 75
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=97.42 E-value=0.2 Score=51.45 Aligned_cols=200 Identities=16% Similarity=0.086 Sum_probs=117.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCchhhhhHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009714 42 VRVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILEL 121 (528)
Q Consensus 42 ~~~~l~~~l~~l~~~~~a~~~ael~~~~P~~~Gg~y~~~~~~~g~~~gf~~gw~~~l~~~~~~a~~~~~~~~~~~~~~~~ 121 (528)
..++++.+++.++........+..+.+... ......+..||.+-..+......+..+...+.++...++.++.+.+.
T Consensus 29 ~~ai~aiilG~~i~~~~~~l~~~~G~~~Gl---~~~v~sR~~FG~~Gs~~~~~l~~i~~igW~~v~~~~gg~~l~~~~~~ 105 (386)
T TIGR02358 29 TRGLLAILLGHLVGVLLLSAAGVIGADTGL---SAMGSLKLSLGSKGSVLPSLLNLLQLVGWTAVMIIVGAKAASLLGGR 105 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccCc---CHHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777777776666655566666655432 67778888899988888888888888888888888888888887652
Q ss_pred cccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccccccC-C
Q 009714 122 FPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSN-W 200 (528)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ln~~g~~~~~~~~~i~~~~~i~~l~~~~i~~~~~~~~~~-~ 200 (528)
. ++.. + . .....++.++.......|.|..++++++...+..+..+...+....+.+... +
T Consensus 106 ~--~~~~-~-------------~---~~~~~i~~~l~~~~~~~G~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 166 (386)
T TIGR02358 106 L--FGEE-S-------------P---MLWILIVGILVTLWLLSGPLAFVWLNNWSVWLLLIATLWLLVVVFSKADLSELW 166 (386)
T ss_pred h--cCCC-c-------------h---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhc
Confidence 1 1100 0 0 0112223334556667899999999999888877766665544333322211 1
Q ss_pred CCCCCCChHHHHHHHHHHHHh-hhhhHHHhhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhc
Q 009714 201 SPFAPNGFKEILTGATVVFFA-YVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGM 267 (528)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~-f~G~e~~~~~a~E~k~p~k~ip~ai~~s~~~~~i~y~l~~~~~~~~ 267 (528)
++ +.. ..+..++....-. ..+....+..+...|+| |+.-++...+..+...+..+........
T Consensus 167 ~~--~~~-~s~~~~~~~~~~~~~swa~~~~DysRy~k~~-~~~~~~~~~G~~i~~~~~~~~G~~~~~a 230 (386)
T TIGR02358 167 NR--AGD-MSFAVAVELVIAMPLSWLPLIADYTRFARNP-RHVFLGTVLGYFIGSCWMYFLGLAVTLA 230 (386)
T ss_pred CC--CCC-ccHHHHHHHHHHHHHHHHHHccchhhhcCCC-cceehHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11 111 2333333222211 12223356777777776 5555676666666665555555444433
No 76
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=97.39 E-value=0.22 Score=51.51 Aligned_cols=238 Identities=13% Similarity=0.016 Sum_probs=122.5
Q ss_pred HHHHHHHHHHHHhccCCCCCCchhhhhHHHhch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCcc
Q 009714 54 ASVLNALCYAELASRFPAVVGGAYLYAYTAFNE-LTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSW 132 (528)
Q Consensus 54 ~~~~~a~~~ael~~~~P~~~Gg~y~~~~~~~g~-~~gf~~gw~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (528)
.....+..+.+.-++.+ .=...+|.++-+|+ ....+.+....+......+....+.+..++.+++. +.+
T Consensus 48 ~~~~~~~~~~~~~~~~~--~~T~~e~l~~Ryg~~~~~~~~~~~~i~~~~~~~~~q~~g~~~il~~~~gi--------~~~ 117 (407)
T TIGR00813 48 LLIILGWLFVPIFINNG--AYTMPEYLEKRFGKRILRGLSVLSLILYIFLYMSVDLFSGALLIELITGL--------DLY 117 (407)
T ss_pred HHHHHHHHHHHHHHHcC--CCchhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc--------hHH
Confidence 34446666666655543 46888899999997 56666677777777777788888888877766542 111
Q ss_pred ccCCCccccccchhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccc-------------cc--
Q 009714 133 IGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEV-------------DV-- 197 (528)
Q Consensus 133 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~ln~~g~~~~~~~~~i~~~~~i~~l~~~~i~~~~~~-------------~~-- 197 (528)
. .+.+...+.....-.-|.|...+...+-..+.++..++..+..+.+. ++
T Consensus 118 ~---------------~~ii~~~i~~~Yt~~GG~~av~~Td~iQ~~i~~~~~i~~~~~~~~~~GG~~~~~~~l~~~~~~~ 182 (407)
T TIGR00813 118 L---------------SLLLLGAITILYTVFGGLKAVVWTDTIQAVIMILGTFILPVFAFSEVGGLGTFVEKASQAAPTN 182 (407)
T ss_pred H---------------HHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhcCCCc
Confidence 1 01122223334445567777766655555444443333222211110 01
Q ss_pred ----cCCCC-CCCCC-hHHHHH---HHHHHHHhhhhhH-HHhhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHH--
Q 009714 198 ----SNWSP-FAPNG-FKEILT---GATVVFFAYVGFD-AVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLT-- 265 (528)
Q Consensus 198 ----~~~~~-~~~~~-~~~~~~---~~~~~~~~f~G~e-~~~~~a~E~k~p~k~ip~ai~~s~~~~~i~y~l~~~~~~-- 265 (528)
++++. ..+.. ...+.. +.......+ +.+ ...+-.=-.|| +|+..|+...+.+...+.+....+.-.
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~qR~~a~ks-~~~~r~~~~~~~~~~~~~~~~~~l~G~~a 260 (407)
T TIGR00813 183 PSPDDLYDFFRDPSTSDLPWGAGVFGLPHVALWY-WTNQVIVQRCLAAKS-AKHAKKGCLISGVLKLLPMFGAVLPGLIA 260 (407)
T ss_pred cchhhhccCCCCCcccCCChHHHHhChHHHHHHH-hcCHHHhhHHHhcCC-HHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 00110 00000 001101 111110011 011 01122222455 378888888887666555543332211
Q ss_pred -hccc----ccc----CCCCcHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 009714 266 -GMVP----YKF----LDEDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLY 318 (528)
Q Consensus 266 -~~~~----~~~----~~~~~p~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l 318 (528)
...| ..+ .+.|..+.....+..+++..-++..+.+.+..++..+.+.+.+-.+
T Consensus 261 ~~~~~~~~p~~~~~~~~~~~~~~p~~~~~~lp~~l~gl~~agilaA~mST~~s~l~a~ss~~ 322 (407)
T TIGR00813 261 RALYTDIDPALAGAVNQNSDQAYPLLVQELMPPGLAGLFLAAILAAVMSTLSSQLNSASTVF 322 (407)
T ss_pred HHHhcccChhhhcccCCChhhHHHHHHHHHcCcchHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 1122 111 2445666777777777888888888888888887777776665443
No 77
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=97.30 E-value=0.024 Score=58.67 Aligned_cols=238 Identities=16% Similarity=0.114 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHhccCCCCCCchhhhhHHHhchhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCcc
Q 009714 55 SVLNALCYAELASRFPAVVGGAYLYAYTAFNELT--AFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSW 132 (528)
Q Consensus 55 ~~~~a~~~ael~~~~P~~~Gg~y~~~~~~~g~~~--gf~~gw~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (528)
..+.++.++.--++. + .=...+|.++-+|+.. ..+......+......+.+..+.+..++.+++. +.+
T Consensus 52 ~~~~~~~~~~~~r~~-~-~~T~~e~~~~Ryg~~~~~~~~~~i~~i~~~~~~~~~q~~~~~~~~~~~~gi--------~~~ 121 (406)
T PF00474_consen 52 FLLFALFFAPRLRRS-G-AVTIPEYLEKRYGSKALLRILAAIIIIVFMIPYLAAQLVGGGALLSVLFGI--------PYN 121 (406)
T ss_dssp HHHHHHHTHHHHHHT-T---SHHHHHHHHT-HHH-HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT----------HH
T ss_pred HHHHHHHHHHhhccc-c-hhhhhhhhhhhcCCchhhhhhcccccchhhhhhhhccccccccchhhccch--------hhh
Confidence 344444555544443 3 5688899999999877 555555555566666777777777777766442 110
Q ss_pred ccCCCccccccchhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhccc-------------ccccC
Q 009714 133 IGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFE-------------VDVSN 199 (528)
Q Consensus 133 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~ln~~g~~~~~~~~~i~~~~~i~~l~~~~i~~~~~-------------~~~~~ 199 (528)
. .+.+...+.....-.-|.|...+...+-.++.++..++..+..+.+ .+++.
T Consensus 122 ------------~---~~~i~~~i~~iYt~~GGl~av~~td~iQ~~i~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~ 186 (406)
T PF00474_consen 122 ------------T---AILIVGVIVIIYTFFGGLRAVAWTDFIQGVIMIIGAIVVLIFVLSAVGGFGGLFQNLSAAHPNF 186 (406)
T ss_dssp ------------H---HHHHHHHHHHHTTCTT------SHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-GGG
T ss_pred ------------H---HHHHHHHHHHHhhhhhhHhhhhHHHHHHHHHHHHHHHHhhhccchhcCCchhhHHHHhhcCccc
Confidence 0 0111122222333445667666544444444333333322221111 11111
Q ss_pred CCCCCCCChH---HHHHHHHHHHHhhhhhHHHhhhhhh---hcCCCCchhHHHHHHHHHHHHHHHHHH------HHHHhc
Q 009714 200 WSPFAPNGFK---EILTGATVVFFAYVGFDAVANSAEE---SKKPQRDLPIGILGSLLICAALYVGVS------LVLTGM 267 (528)
Q Consensus 200 ~~~~~~~~~~---~~~~~~~~~~~~f~G~e~~~~~a~E---~k~p~k~ip~ai~~s~~~~~i~y~l~~------~~~~~~ 267 (528)
.+.+.|.+.. .........+....|.....+.... .||+ |+..|+...+.....+++.... ......
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~~~qR~~aak~~-~~ar~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~ 265 (406)
T PF00474_consen 187 LDLFNPGGFSMFSSPLFFLSFWIALMLGTFGAPHFWQRFLAAKSP-KTARKGMLIAIIFLIIFYFLTIFIGLIAIALFGL 265 (406)
T ss_dssp G-SS--SS-----SSGGGGS-TTHHHHSTHHH-HHHHHHHSSSHH-HHHHHHHHHHHGGGTTHHHHHHHHHHHH-HHHHH
T ss_pred ccccCCCCcccccchhhhHHHHHHHHhhhccchHHHHHHHhcCCH-HHHHHHHhHHhhhheeeehHHhhhhhhhhccccc
Confidence 1112222210 0010000000011122222333222 3443 6777887776654444433311 112222
Q ss_pred cc----cccCCCCcHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 009714 268 VP----YKFLDEDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLY 318 (528)
Q Consensus 268 ~~----~~~~~~~~p~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l 318 (528)
.| ++.-+.+..+.....+..+++..-++..+.+.+..++..+.+.+.+-.+
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~gl~~~~~~aA~~ST~~s~l~a~ss~~ 320 (406)
T PF00474_consen 266 YPDAAGPSLGDPDLAFPYLAAQYLPPGLAGLFLAGILAAIMSTADSLLLAISSIF 320 (406)
T ss_dssp H-TT--S-SSSGGGHHHHHHT-TS-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccCCcccchhhhhhhccchhHHHHHHHHHHhhhHHHHHHHhhhhhhh
Confidence 22 1222345567777888888888888888888888888888887776654
No 78
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=96.91 E-value=0.58 Score=47.23 Aligned_cols=170 Identities=16% Similarity=0.109 Sum_probs=98.0
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccccccCC--------CCCCCCCh-HHHHHHH
Q 009714 145 LSINILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNW--------SPFAPNGF-KEILTGA 215 (528)
Q Consensus 145 ~~~~l~~~~~~~~~~~ln~~g~~~~~~~~~i~~~~~i~~l~~~~i~~~~~~~~~~~--------~~~~~~~~-~~~~~~~ 215 (528)
....+...++..+...+.+..-|...++-++++-++++.++.+.+..+.+.+.+-. +++. .|+ .+....=
T Consensus 118 ~~l~ifs~ifF~ia~~~sl~psklid~vGk~LTPilLv~l~il~i~~~~~p~g~~~~a~~~y~~~pf~-~GfleGY~TMD 196 (431)
T COG1114 118 PSLFIFSVIFFAIAYLFSLNPSKLIDRVGKFLTPILLVLLLILVIAAIIPPAGPISAASGAYQSQPFS-KGFLEGYLTMD 196 (431)
T ss_pred hHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCCcccccHHHHhChHH-HHHhcchHHHH
Confidence 34556777888888889999999999999999999988888888776655332211 1111 121 1222222
Q ss_pred HHHHHhhhhhHHHhhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHH--HhccccccCCC----CcHHHHHHHHcChh
Q 009714 216 TVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVL--TGMVPYKFLDE----DAPLSDAFASRGLK 289 (528)
Q Consensus 216 ~~~~~~f~G~e~~~~~a~E~k~p~k~ip~ai~~s~~~~~i~y~l~~~~~--~~~~~~~~~~~----~~p~~~~~~~~~~~ 289 (528)
..+...|...-..+.-..-.+++ |+..|-...+-++..+.-.+.-..+ .+....+.... ..-+.+.-+...|+
T Consensus 197 aLAal~FgivIv~alk~~g~~~~-~~~~~~~~~aglIa~i~La~iY~~L~ylGa~s~~~~~~~~nG~~IL~~~s~~~fG~ 275 (431)
T COG1114 197 ALAALAFGIVIVNALKSKGVTTK-KQIIKYTIKAGLIAAILLALIYLSLFYLGATSASAAGLAANGGQILSAYSQHLFGS 275 (431)
T ss_pred HHHHHHHHHHHHHHHHHhccCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhhcccccchHHHHHHHHHHHhch
Confidence 33455555544444434444444 3444444444444443322222222 22222222211 22344555666778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 009714 290 YVSVLISFGAVAGLTTTLLVGLYVQSR 316 (528)
Q Consensus 290 ~~~~i~~~~~~~~~~~~~~~~~~~~sR 316 (528)
....++.....+++..+..+...+.+.
T Consensus 276 ~G~~lL~~iv~lACLTTaiGLi~a~ae 302 (431)
T COG1114 276 YGSILLGLIVFLACLTTAVGLIVACAE 302 (431)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888889999999888877766665
No 79
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B.
Probab=96.75 E-value=0.97 Score=47.54 Aligned_cols=224 Identities=18% Similarity=0.156 Sum_probs=109.2
Q ss_pred HHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHhhhccc--------------cc---ccC-CCCCCCCC-h
Q 009714 149 ILAPILLALLTIVLCWGV-GESSVLNSCMTVVKVIIVIVVIFAGAFE--------------VD---VSN-WSPFAPNG-F 208 (528)
Q Consensus 149 l~~~~~~~~~~~ln~~g~-~~~~~~~~i~~~~~i~~l~~~~i~~~~~--------------~~---~~~-~~~~~~~~-~ 208 (528)
.+..++.++++.-...|+ |-.+++.++-..+.+..++.+.+.|-.. .| .+. ..+..+.+ |
T Consensus 221 ~ii~~~~~i~~~S~~~Gl~kGIk~LS~~n~~l~~~ll~~vl~~Gpt~fil~~~~~s~G~yl~~f~~~s~~t~~~~~~~~w 300 (485)
T PF02028_consen 221 IIIIVITVIFTISAVSGLDKGIKRLSNINVYLAFALLLFVLLFGPTVFILNLFTESIGDYLQNFFRMSLWTDPFGNSGQW 300 (485)
T ss_dssp HHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHT--TTTTTTTHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccc
Confidence 344444555555556666 3355555555555554444444443111 00 111 12333444 7
Q ss_pred HHHHHHHHHHHHhhhhhHHHhhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhcccc-ccCCC------------
Q 009714 209 KEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPY-KFLDE------------ 275 (528)
Q Consensus 209 ~~~~~~~~~~~~~f~G~e~~~~~a~E~k~p~k~ip~ai~~s~~~~~i~y~l~~~~~~~~~~~-~~~~~------------ 275 (528)
.+-+..+..+.|.--+-=.....+.=.|. |++..-+...++. -.+....-..+.+...- .+.+.
T Consensus 301 ~~~WTvFYwaWWiawaPfvG~FiArISkG--RTIRE~il~~~~~-psl~~~~wf~ifGg~al~~~~~g~~~~~~~~~~g~ 377 (485)
T PF02028_consen 301 PQDWTVFYWAWWIAWAPFVGLFIARISKG--RTIREFILGVLLV-PSLFCFLWFSIFGGYALYLQLSGAGDLAAANEQGP 377 (485)
T ss_dssp HHHTHHHHHHHHHHTHHHHHHHHHHCTTT--SBHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHCTSS-HHHHHHH-H
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHhhhcCC--cCHHHHHHHHHHh-hHHHHHHHHHHHCchHHhhHhhhhhhHHHHhhcch
Confidence 77777777777766665566667666664 8885555444444 33333333333322111 11111
Q ss_pred CcHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCCCCchhhhhhcCCcc-cchHHHHHHHHHHHH
Q 009714 276 DAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRH-TPVHSQVWVGIVAGI 354 (528)
Q Consensus 276 ~~p~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~~~~~n~r~~-~P~~a~l~~~~i~~~ 354 (528)
++.+.+.+++... ..++....++..+....+..-+.+..+-.++.+| +.||++. .=.++ +..++++..
T Consensus 378 ~~a~~~~l~~lP~---~~i~~~~~lil~~~f~vTs~DS~~~~la~~s~~~-------~~ep~~~~ri~W~-~~~~~~a~~ 446 (485)
T PF02028_consen 378 EAALFAFLEQLPL---SKILSILFLILIFIFFVTSADSATYVLAMLSSKG-------DEEPPRWLRIFWG-LIIGALAIV 446 (485)
T ss_dssp HHHHHHHHHTSTT---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-------TSSS-HHHHHHHH-HHHHHHHHH
T ss_pred hhHHHHHHHHhhH---HHHHHHHHHHHHHHHHHhcccHHHHHHHHHHcCC-------CCCCchHHHHHHH-HHHHHHHHH
Confidence 1223344444432 2344444444444445555566677777787776 1122111 11222 345555566
Q ss_pred HHHhhCHHHHHHHHHHHHH---HHHHHHHHHHHhh
Q 009714 355 LAGLFNVRVLSHILSVGTL---TGYSVVSACVIAL 386 (528)
Q Consensus 355 ~~~~~~~~~l~~~~~~~~l---~~y~~~~~~~~~~ 386 (528)
+....+.+.+-++..++.+ +...+.+.+.++.
T Consensus 447 ll~~ggl~~lq~~~ii~~lP~~~v~~~~~~~~~k~ 481 (485)
T PF02028_consen 447 LLLIGGLDALQSASIIGGLPFSFVMLLMCISFIKA 481 (485)
T ss_dssp HHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666777777776666554 3444444444443
No 80
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=96.65 E-value=0.96 Score=46.26 Aligned_cols=156 Identities=17% Similarity=0.195 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHHHHhhhhH-HHHHHHHHHHHHHHHHHHHHhhhccc------------ccccCCCCCCCCChHHHHHHH
Q 009714 149 ILAPILLALLTIVLCWGVGE-SSVLNSCMTVVKVIIVIVVIFAGAFE------------VDVSNWSPFAPNGFKEILTGA 215 (528)
Q Consensus 149 l~~~~~~~~~~~ln~~g~~~-~~~~~~i~~~~~i~~l~~~~i~~~~~------------~~~~~~~~~~~~~~~~~~~~~ 215 (528)
..-++++.+..++-.+|++. ..|.+.++.-...+.++++.+-.+.. .|.+..+ +...+..+.
T Consensus 146 ~~~~~~~~lt~~iv~~GV~~GIEk~~kimMP~Lfvl~i~Lvi~~~tLpGA~~G~~f~l~PD~s~l~-----~~~v~~~Al 220 (439)
T COG0733 146 IFHLLFLVLTALIVSRGVKKGIEKANKIMMPLLFVLFIILVIRAVTLPGAMEGLKFLFKPDFSKLT-----DPKVWLAAL 220 (439)
T ss_pred HHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHhcCCHHHcC-----chhhHHHHH
Confidence 34455566667777788876 88888888777666666655543332 2222222 133566677
Q ss_pred HHHHHhh-hhhHHHhhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHh---ccccccCCCC----cHHHHHHHHcC
Q 009714 216 TVVFFAY-VGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTG---MVPYKFLDED----APLSDAFASRG 287 (528)
Q Consensus 216 ~~~~~~f-~G~e~~~~~a~E~k~p~k~ip~ai~~s~~~~~i~y~l~~~~~~~---~~~~~~~~~~----~p~~~~~~~~~ 287 (528)
-.++|+. .|+-....++.-.++ +.|+++.-......-..+-++.-+.+.- ....+.-+.. ..++.++.+.+
T Consensus 221 GQ~FFsLSlG~g~mitYsSYL~k-~~~l~~sa~~v~~~n~~~s~lAGl~Ifpa~f~~g~~~~~GpgL~Fi~LP~if~~mp 299 (439)
T COG0733 221 GQAFFSLSLGFGIMITYSSYLSK-KSDLVSSALSIVLLNTLISLLAGLVIFPALFSFGADASQGPGLVFIVLPAVFNQMP 299 (439)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCc-ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCeeehhHHHHHHHhCc
Confidence 7777777 677777777776665 5788887776666655554444444332 2222211111 24566777765
Q ss_pred -hhHHHHHHHHHHHHHHHHHHHHH
Q 009714 288 -LKYVSVLISFGAVAGLTTTLLVG 310 (528)
Q Consensus 288 -~~~~~~i~~~~~~~~~~~~~~~~ 310 (528)
+.....++....+++..++..+.
T Consensus 300 ~G~~~~~lFFl~l~fAalTS~iSm 323 (439)
T COG0733 300 LGTLFGILFFLLLLFAALTSAISM 323 (439)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 23333344444444444444433
No 81
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=96.53 E-value=0.12 Score=53.11 Aligned_cols=63 Identities=11% Similarity=0.082 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHhhhhhHHHhhhhhhhcCCC-CchhHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 009714 209 KEILTGATVVFFAYVGFDAVANSAEESKKPQ-RDLPIGILGSLLICAALYVGVSLVLTGMVPYK 271 (528)
Q Consensus 209 ~~~~~~~~~~~~~f~G~e~~~~~a~E~k~p~-k~ip~ai~~s~~~~~i~y~l~~~~~~~~~~~~ 271 (528)
.++..++...+++|...+.....-.|+|||+ |++-+....+...+.++|......-....+++
T Consensus 194 ~~~~~~~pi~~faf~Ch~n~~~i~~El~~~s~~~i~~v~~~~~~~~~~iy~~~g~~GYL~Fg~~ 257 (411)
T KOG1305|consen 194 SSLFYALPIFVFAFTCHSNVFPIYNELKDRSVKKIQRVSNIAIILATLIYLLTGLFGYLTFGDL 257 (411)
T ss_pred hhhhhhhhhhheeeeccccceeeeeeeeCchHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccc
Confidence 4789999999999999999999999999995 78888899999999999998888776666543
No 82
>TIGR00794 kup potassium uptake protein. Proteins of the KUP family include the KUP (TrkD) protein of E. coli, a partially sequenced ORF from Lactococcus lactis, high affinity K+ uptake systems (Hak1) of the yeast Debaryomyces occidentalis as well as the fungus, Neurospora crassa, and several homologues in plants. While the E. coli KUP protein is assumed to be a secondary transporter, and uptake is blocked by protonophores such as CCCP (but not arsenate), the energy coupling mechanism has not been defined. However, the N. crassa protein has been shown to be a K+:H+ symporter, establishing that the KUP family consists of secondary carriers. The plant high affinity (20mM) K+ transporter can complement K+ uptake defects in E. coli.
Probab=96.39 E-value=0.24 Score=53.57 Aligned_cols=221 Identities=11% Similarity=0.053 Sum_probs=113.6
Q ss_pred hHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCC---------ChHHHHHHHHHH
Q 009714 148 NILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSPFAPN---------GFKEILTGATVV 218 (528)
Q Consensus 148 ~l~~~~~~~~~~~ln~~g~~~~~~~~~i~~~~~i~~l~~~~i~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~ 218 (528)
..+++++++.++.+.-+|....++...-...+=.+.+.++.+..+.+.+++-...+.|. +..++ ..+...
T Consensus 169 v~it~~ILv~LF~iQ~~GT~kvg~~FgPim~vWF~~l~~~Gi~~I~~~~P~Vl~AlnP~ya~~f~~~~~~~~~-~~LG~V 247 (688)
T TIGR00794 169 VPISCIILVLLFLIQRFGTAKVGFTFAPIILVWLLLLAGIGIYNIVKFNPEVLKALSPYYAVQFFIEYGTVGW-VSLGGV 247 (688)
T ss_pred hhHHHHHHHHHHHHhccccHHHhhhhhhHHHHHHHHHHHHHHHHHHhcCHHHHhHhCHHHHHHHHHHCCCcee-eeccch
Confidence 34788888888899999987776654333333233333333333333244433333332 22121 133446
Q ss_pred HHhhhhhHHHhhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCcHHHHHHHHcChhHHHHHHHHH
Q 009714 219 FFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAFASRGLKYVSVLISFG 298 (528)
Q Consensus 219 ~~~f~G~e~~~~~a~E~k~p~k~ip~ai~~s~~~~~i~y~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~i~~~~ 298 (528)
+.+.+|.|+.- |+-=+-.+|.+-++-..-+.-+.++.-+.+-+....-|. ...+|+... ..++..+-+.+.
T Consensus 248 ~L~iTGaEALy--ADmGHFg~~~Ir~aw~~~V~P~L~LnY~GQgA~ll~~p~---~~~NpFf~~----~P~~~~~p~~vl 318 (688)
T TIGR00794 248 VLSITGVEAMF--ADLGHFGKLPIQLAWFTFVYPSLILCYIGQAAYLSKHPE---AIKNPFFLS----IPDWALWPLFII 318 (688)
T ss_pred hheeccHhhhh--cccCCCCcccceeehHHHHHHHHHHHHcchHHHHhcCcc---hhcCcHHHh----CchHHHHHHHHH
Confidence 78889999753 222233456666665544444444433444444433332 124555433 334555555555
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHhhcCCCCch-hhhhhcCC--cc--cchHHHHHHHHHHHH-HHHhhCHHHHHHHHHHHH
Q 009714 299 AVAGLTTTLLVGLYVQSRLYLGLGRDGLLPS-IFAKVHPK--RH--TPVHSQVWVGIVAGI-LAGLFNVRVLSHILSVGT 372 (528)
Q Consensus 299 ~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~-~~~~~n~r--~~--~P~~a~l~~~~i~~~-~~~~~~~~~l~~~~~~~~ 372 (528)
+.++..-+..+.+.++=.+..+.-+-|.+|+ ...+++++ .+ .|..- ++..+.++. ...+-+.+.+.+..+++.
T Consensus 319 AtlAtIIASQA~IsG~FSl~~Qai~Lg~~Pr~~I~hTS~~~~GQIYiP~vN-w~Lmv~~i~vvl~F~~S~~la~AYGiaV 397 (688)
T TIGR00794 319 ATLAAIIASQAVISGVFSITSQAVRLGCFPRVKIIHTSEKYHGQIYIPFVN-WLLMLGVIAVTAGFRDTNNLGAAYGIAV 397 (688)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCCccCCceeeHHHH-HHHHHHHHheeEEecChHHHHHHhhhhh
Confidence 5555555555555555566667777899994 33444433 22 34332 222222222 222336678888877777
Q ss_pred HHHHHHH
Q 009714 373 LTGYSVV 379 (528)
Q Consensus 373 l~~y~~~ 379 (528)
.....++
T Consensus 398 t~tM~iT 404 (688)
T TIGR00794 398 TGTFLVT 404 (688)
T ss_pred hhhhHHH
Confidence 5544443
No 83
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=96.30 E-value=0.24 Score=51.84 Aligned_cols=136 Identities=12% Similarity=0.108 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCchhhhhHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 009714 43 RVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELF 122 (528)
Q Consensus 43 ~~~l~~~l~~l~~~~~a~~~ael~~~~P~~~Gg~y~~~~~~~g~~~gf~~gw~~~l~~~~~~a~~~~~~~~~~~~~~~~~ 122 (528)
.++++.+++.++........+.++.+.- =.....++..||.+-..+......+..+...+.++...++.+..+.+..
T Consensus 43 ~ailai~~G~~l~~i~~~~~~~~G~r~G---l~~~v~sR~~FG~~Gs~l~~~l~~i~~igW~av~~~~~g~al~~~~~~~ 119 (440)
T PF02133_consen 43 QAILAILIGNLLGAILVALMGIIGPRTG---LPTMVLSRASFGYRGSKLPSLLRAISAIGWFAVNTWLGGQALAALLGII 119 (440)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHCC------HHHHTTTTS-TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccC---CCchhcchhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 6777777777776655555566665542 2666777778998877777777777777777888888888888776532
Q ss_pred -ccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 009714 123 -PFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIF 189 (528)
Q Consensus 123 -~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ln~~g~~~~~~~~~i~~~~~i~~l~~~~i 189 (528)
+. +.+... ..........+..+++.++.......|.|...+++.+...+.....+...+
T Consensus 120 ~g~-----~~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~ 179 (440)
T PF02133_consen 120 FGS-----FLWIGN---AIIGIALPLWVCFFIFWLIQTLFAIYGMKALRRLAVIAAPILLVVFIGMLI 179 (440)
T ss_dssp C----------HH--------------HHHHHHHHHHHHHHCTHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred cCc-----chhhhh---hhhcchhhHHHHHHHHHHHHHHHHhcCHHHHHhHHhhhhHHHHhhhhheeE
Confidence 10 000000 000001111122233345556667788888888888776655544433333
No 84
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=96.22 E-value=2.2 Score=45.54 Aligned_cols=43 Identities=14% Similarity=0.070 Sum_probs=31.4
Q ss_pred CCcHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 009714 275 EDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRL 317 (528)
Q Consensus 275 ~~~p~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~ 317 (528)
+|..+.....+..+++..-++..+.+.+..++..+.+.+.|-.
T Consensus 310 ~d~~~~~l~~~~lp~~l~gl~~a~ilAA~mST~~s~l~a~ss~ 352 (502)
T PRK15419 310 AERVFIELAQILFNPWIAGILLSAILAAVMSTLSCQLLVCSSA 352 (502)
T ss_pred cchHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666777778877888888888888888877776643
No 85
>PLN00149 potassium transporter; Provisional
Probab=96.16 E-value=0.32 Score=53.20 Aligned_cols=221 Identities=10% Similarity=0.008 Sum_probs=112.5
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCC---------ChHHHHHHHHHHH
Q 009714 149 ILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSPFAPN---------GFKEILTGATVVF 219 (528)
Q Consensus 149 l~~~~~~~~~~~ln~~g~~~~~~~~~i~~~~~i~~l~~~~i~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~ 219 (528)
.+++++++.++.+.-+|....++...-...+=.+.+..+.+..+.+.|++-+..+.|. +..+ +..+.-++
T Consensus 200 ~is~~ILv~LF~~Q~~GT~kvg~~FgPIml~Wf~~i~~iGiyni~~~~p~Vl~AlnP~y~~~f~~~~~~~g-~~~LGgV~ 278 (779)
T PLN00149 200 PVACIILIGLFALQHYGTHRVGFLFAPVVLTWLLCISAIGVYNIFHWNPHVYQALSPYYMYKFLKKTQRGG-WMSLGGIL 278 (779)
T ss_pred HHHHHHHHHHHHHhccccHHHhhhhhhHHHHHHHHHHHHHHHHHHhcCHhHhhhcCHHHHHHHHHHCCCce-eEeecchh
Confidence 4788888889999999987776653333333233333333334444455555544442 1111 12233467
Q ss_pred HhhhhhHHHhhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCcHHHHHHHHcChhHHHHHHHHHH
Q 009714 220 FAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAFASRGLKYVSVLISFGA 299 (528)
Q Consensus 220 ~~f~G~e~~~~~a~E~k~p~k~ip~ai~~s~~~~~i~y~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~i~~~~~ 299 (528)
.+++|.|+.- |+-=.-.+|.+-+|-..-+.-+.++--..+.+....-|...-+-.+|+... ..++..+-+.+.+
T Consensus 279 L~iTG~EALy--ADlGHF~~~~Ir~aw~~~V~P~L~L~Y~GQaA~l~~~p~~~~~~~~pFy~~----iP~~~~~P~~vlA 352 (779)
T PLN00149 279 LCITGSEAMF--ADLGHFSQLSIKIAFTSLVYPSLILAYMGQAAYLSKHHVIESDYRIGFYVS----VPEKLRWPVLVIA 352 (779)
T ss_pred hcccchhhhh--hcccCCCccceeeeehhhHHHHHHHHhhhHHHHHhcCcchhccccCcHHHh----CCchhHHHHHHHH
Confidence 8889999753 333334556666665544444444444444444443332212223454332 3334444444444
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhhcCCCCch-hhhhhcCCcc----cchHHHHHHHHHHHHHHH-hhCHHHHHHHHHHHHH
Q 009714 300 VAGLTTTLLVGLYVQSRLYLGLGRDGLLPS-IFAKVHPKRH----TPVHSQVWVGIVAGILAG-LFNVRVLSHILSVGTL 373 (528)
Q Consensus 300 ~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~-~~~~~n~r~~----~P~~a~l~~~~i~~~~~~-~~~~~~l~~~~~~~~l 373 (528)
.++..-+..+.+.++=.++.+.-+-|.+|+ ..-+++++.+ .|..- ++..+.++++.+ +-+.+.+.+..+++..
T Consensus 353 tlAaIIASQA~ISg~FSii~Qa~~Lg~fPrvkIvhTS~~~~GQIYIP~vN-w~Lmv~~i~vv~~F~~s~~l~~AYGiAV~ 431 (779)
T PLN00149 353 ILAAVVGSQAIITGTFSIIKQCSALGCFPKVKIVHTSSKIHGQIYIPEIN-WTLMLLCLAVTVGFRDTKRLGNASGLAVI 431 (779)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCcccCCceeeHHHH-HHHHHHHHhheeEecChHHHHHHhhhhhe
Confidence 444444445555555566666667799993 3333443222 44332 233333333222 3366778887777765
Q ss_pred HHHH
Q 009714 374 TGYS 377 (528)
Q Consensus 374 ~~y~ 377 (528)
....
T Consensus 432 ~vM~ 435 (779)
T PLN00149 432 TVML 435 (779)
T ss_pred hHHH
Confidence 4333
No 86
>PRK10484 putative transporter; Provisional
Probab=96.02 E-value=2.8 Score=45.00 Aligned_cols=82 Identities=11% Similarity=-0.071 Sum_probs=48.6
Q ss_pred hcCCCCchhHHHHHHHHHHHHHHHHHHH---HHHhccccccCCCCcHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHH
Q 009714 235 SKKPQRDLPIGILGSLLICAALYVGVSL---VLTGMVPYKFLDEDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGL 311 (528)
Q Consensus 235 ~k~p~k~ip~ai~~s~~~~~i~y~l~~~---~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 311 (528)
.||+ |+..|+...+.....+.+..... ......|.+..++|..+.....+..+++..-++..+.+.+..++..+.+
T Consensus 270 ak~~-k~a~~~~~~~~~~~~~~~~~~~~~G~~a~~~~p~~~~~~d~~~p~~~~~~lp~~l~Gl~~a~ilAA~mST~~s~l 348 (523)
T PRK10484 270 AKNL-AEGQKGALLAAFFKLLGPLILVLPGIIAFHLYGDGLPNADMAYPTLVNDVLPVPLVGFFAAVLFGAILSTFNGFL 348 (523)
T ss_pred CCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCChhhHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 4554 67777777765544433332221 1122233322345666777777777777777777777777777777777
Q ss_pred HhHHHH
Q 009714 312 YVQSRL 317 (528)
Q Consensus 312 ~~~sR~ 317 (528)
.+.|-.
T Consensus 349 ~s~st~ 354 (523)
T PRK10484 349 NSASTL 354 (523)
T ss_pred HHHHHH
Confidence 666543
No 87
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=95.80 E-value=2.7 Score=43.19 Aligned_cols=297 Identities=12% Similarity=0.067 Sum_probs=146.5
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCchhhhhHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009714 39 PVQVRVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSI 118 (528)
Q Consensus 39 ~~G~~~~l~~~l~~l~~~~~a~~~ael~~~~P~~~Gg~y~~~~~~~g~~~gf~~gw~~~l~~~~~~a~~~~~~~~~~~~~ 118 (528)
+-|-.-.++|..+..+ ..+..+|--+++-+ .-=.-.+.+|.-.+..-.+++..-.+.-.+.......+.+..+..+
T Consensus 74 YdG~~Y~iG~~~Gy~i---~~fL~A~~LRk~Gk-yT~aD~~a~Ry~~~~~R~~aa~~ti~vs~~YliaQmvGaG~li~~l 149 (529)
T COG4147 74 YDGLIYSIGWTGGYPI---LLFLIAEYLRKLGK-YTFADFIADRYKSNPARLLAAIGTIIVSFLYLIAQMVGAGLLISLL 149 (529)
T ss_pred cchHHHHHHHHHHHHH---HHHHHHHHHHhcCC-cchHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 3344444555554433 45566776666554 2222244556656666666665555555555566666666777666
Q ss_pred HhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccc--c
Q 009714 119 LELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEV--D 196 (528)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ln~~g~~~~~~~~~i~~~~~i~~l~~~~i~~~~~~--~ 196 (528)
++. +.+. -+.++.++.....-.-|.|...|.|.+=.++.+...++..+.-..+. +
T Consensus 150 ~gv--------~~~v---------------gv~ig~ilm~~Yvv~GGM~atTW~Qi~qavlLi~a~~i~ai~i~~~~~g~ 206 (529)
T COG4147 150 LGV--------PYHV---------------GVVIGGILMMVYVVLGGMKATTWVQIIQAVLLIVAALIMAIMIMWKLGGN 206 (529)
T ss_pred hCC--------Ccee---------------ehhhHhHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 552 1111 14455556666677788888888887766666555555444322221 1
Q ss_pred cc-------------CCCCCCCCCh--HHHHHHHHHHHHhhhhhHHHhhhh------hhhcCCCCchhHHHHHHHHHHHH
Q 009714 197 VS-------------NWSPFAPNGF--KEILTGATVVFFAYVGFDAVANSA------EESKKPQRDLPIGILGSLLICAA 255 (528)
Q Consensus 197 ~~-------------~~~~~~~~~~--~~~~~~~~~~~~~f~G~e~~~~~a------~E~k~p~k~ip~ai~~s~~~~~i 255 (528)
+. +.+...+.|. ...+..+...+--..|.-..+|.- .++ |+..|+...++...+.
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~pGl~~~~~i~~isl~~aLm~GTAgLPHil~RFfTvp~~----k~AR~Sv~wA~~fIg~ 282 (529)
T COG4147 207 PNPLFAEAVTVHPKDDGSDIMEPGLLYKDPIDFISLGFALMVGTAGLPHILMRFFTVPDA----KEARKSVFWATGFIGI 282 (529)
T ss_pred cchHHHHHhhcCcccCcccccCCCCcccCHHHHHHHHHHHHHccCCCCeEEEEEEecCcH----HHHHHHHHHHHHHHHH
Confidence 10 0111111121 122333333333345555566543 344 4455666778888888
Q ss_pred HHHHHHHHHHh----cc--ccc------------cCCC-------CcHHHHHHHHcC-hhHHHHHHHHHHHHHHHHHHHH
Q 009714 256 LYVGVSLVLTG----MV--PYK------------FLDE-------DAPLSDAFASRG-LKYVSVLISFGAVAGLTTTLLV 309 (528)
Q Consensus 256 ~y~l~~~~~~~----~~--~~~------------~~~~-------~~p~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~ 309 (528)
+|+.....-.+ .. |.. +.+. +.....+....+ +++..-+++...+....++.-+
T Consensus 283 fYi~~~~ig~~A~~~v~t~~~~~p~w~~~w~~~~D~~~~gi~~~~n~a~vlaa~~i~~g~~v~g~vsAga~AtaLstaaG 362 (529)
T COG4147 283 FYILTPIIGAGARLLVGTNPVGKPAWAAKWIKTGDANGDGIGGWTNMAAVLAAPAIGGGPWVLGFVSAGAFATALSTAAG 362 (529)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCcchhhcccccccccccccccccchHHHhhhHHhcCCceehhHHHHHHHHHHHHHHhh
Confidence 88877664322 11 111 1100 122333444455 5666666666655555555444
Q ss_pred HHH----hHHHHHHHhhcCCCCchhhhhhcCCcccchHHHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q 009714 310 GLY----VQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLFNVRVLSHILSVGT 372 (528)
Q Consensus 310 ~~~----~~sR~l~a~a~dg~lP~~~~~~n~r~~~P~~a~l~~~~i~~~~~~~~~~~~l~~~~~~~~ 372 (528)
... +.||=+|++--++-. ++.. +-..-+.+.....+++..+.... .+.+..+...+.
T Consensus 363 L~l~iasavsHDiY~~vik~~a----se~~-~v~vaRi~~v~~~vva~~lgi~~-~gnVaflVa~AF 423 (529)
T COG4147 363 LLLVIASAVSHDLYAMVIKKGA----TEKK-EVRVARIAVVILGVVAILLGILP-PGNVAFLVALAF 423 (529)
T ss_pred HHHHHHHHHHhHHHHHHhCCCC----Cccc-eehhHHHHHHHHHHHHHHheecC-CccHHHHHHHHH
Confidence 433 345555555444432 2222 33344445555555544443332 224444444433
No 88
>PRK10745 trkD potassium transport protein Kup; Provisional
Probab=95.80 E-value=0.55 Score=50.06 Aligned_cols=217 Identities=13% Similarity=0.066 Sum_probs=109.4
Q ss_pred hHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccc--cccCCCCCCCC---------ChHHHHHHHH
Q 009714 148 NILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEV--DVSNWSPFAPN---------GFKEILTGAT 216 (528)
Q Consensus 148 ~l~~~~~~~~~~~ln~~g~~~~~~~~~i~~~~~i~~l~~~~i~~~~~~--~~~~~~~~~~~---------~~~~~~~~~~ 216 (528)
..+++++++.++.+.-+|....++.. .-+.++=.+...+.|+.+. +++-+..+.|. +..++ ..+.
T Consensus 144 vpit~~ILv~LF~iQ~~GT~~vG~~F---gPIm~vWF~~i~~~Gi~~I~~~P~Vl~AlnP~ya~~f~~~~~~~gf-~~LG 219 (622)
T PRK10745 144 VPLSIIVLTLLFMIQKHGTGMVGKLF---APIMLTWFLTLAVLGLRSIIANPEVLHALNPMWAVHFFLEYKTVSF-FALG 219 (622)
T ss_pred HHHHHHHHHHHHHHhccccHHHhhhh---hhHHHHHHHHHHHHHHHHHhcCHHHHhHhCHHHHHHHHHhCCCceE-EEec
Confidence 34788888888889989987777653 3333333333333333321 33333333331 22111 1233
Q ss_pred HHHHhhhhhHHHhhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCcHHHHHHHHcChhHHHHHHH
Q 009714 217 VVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAFASRGLKYVSVLIS 296 (528)
Q Consensus 217 ~~~~~f~G~e~~~~~a~E~k~p~k~ip~ai~~s~~~~~i~y~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~i~~ 296 (528)
..+.+.+|-|+.- |+-=+-.+|.+.++-..-+.-+.++.-+.+-+....-|. ..++|+... ..++..+-+.
T Consensus 220 ~V~L~vTGaEALY--ADmGHFG~~~Ir~aW~~~v~P~L~LnY~GQgA~ll~~p~---~~~NpFf~~----~P~~~~~p~v 290 (622)
T PRK10745 220 AVVLAITGVEALY--ADMGHFGKFPIRLAWFTVVLPSLVLNYFGQGALLLKNPE---AIKNPFFLL----APDWALIPLL 290 (622)
T ss_pred ceeeeccchHHHh--hccCCCCccceeeeehhhHHHHHHHHhcchHHHHhcCch---hhcCcHHHh----CChhHHHHHH
Confidence 4678889999752 333334456666665544443444433444444433231 124565433 3345545444
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhhcCCCCch-hhhhhcCC--cc--cchHHHHHHHHHHHH-HHHhhCHHHHHHHHHH
Q 009714 297 FGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPS-IFAKVHPK--RH--TPVHSQVWVGIVAGI-LAGLFNVRVLSHILSV 370 (528)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~-~~~~~n~r--~~--~P~~a~l~~~~i~~~-~~~~~~~~~l~~~~~~ 370 (528)
+.+.+++.-+..+.+.++=.+..+.-+-|.+|+ ...+++++ .+ .|..- ++..+.+.. ...+-+.+.+.+..++
T Consensus 291 iLATlAtIIASQAvISGaFSl~~QAi~Lg~~Prl~I~hTS~~~~GQIYIP~vN-w~Lmv~~i~~vl~F~sS~~La~AYGi 369 (622)
T PRK10745 291 ILATLATVIASQAVISGVFSLTRQAVRLGYLPPMRIIHTSEMESGQIYIPFVN-WLLYVAVVIVIVSFEHSSNLAAAYGI 369 (622)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhCCCCCceEEeCCCccCCceeeHHHH-HHHHHHHHeeEEEecCchHHHHHhhh
Confidence 555555555555555555566666677899994 33444433 22 34332 222222222 2223366778877777
Q ss_pred HHHHHHHH
Q 009714 371 GTLTGYSV 378 (528)
Q Consensus 371 ~~l~~y~~ 378 (528)
+......+
T Consensus 370 AVt~tM~i 377 (622)
T PRK10745 370 AVTGTMVL 377 (622)
T ss_pred hheeHhHH
Confidence 76544443
No 89
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=95.75 E-value=3.4 Score=43.90 Aligned_cols=67 Identities=10% Similarity=-0.066 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCchhhhhHHHhc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009714 52 GAASVLNALCYAELASRFPAVVGGAYLYAYTAFN-ELTAFLVFAQLMLDYHIGAASIARSLASYVVSILE 120 (528)
Q Consensus 52 ~l~~~~~a~~~ael~~~~P~~~Gg~y~~~~~~~g-~~~gf~~gw~~~l~~~~~~a~~~~~~~~~~~~~~~ 120 (528)
.+.....+--..+++ +.++ .=..++|.++-|| +....+.+....+......+....+.+..++..++
T Consensus 85 ~~~~~~~~~rl~~~~-~~~~-~~T~~d~l~~Rf~s~~lr~l~ali~iv~~i~yia~ql~~~~~~~~~~~g 152 (493)
T COG0591 85 FLLWLLFAPRLRRLA-KARG-ATTIPDFLEARFGSKILRILSALIIIVFFIPYIALQLVAGGLLLSLLFG 152 (493)
T ss_pred HHHHHHHHHHHHHHh-cccC-CccHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Confidence 344555666677777 5555 6789999999999 88888888888888888888988888887765543
No 90
>PRK12488 acetate permease; Provisional
Probab=95.74 E-value=3.7 Score=44.27 Aligned_cols=60 Identities=3% Similarity=-0.183 Sum_probs=37.9
Q ss_pred HHHHHHHhccCCCCCCchhhhhHHHhc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009714 59 ALCYAELASRFPAVVGGAYLYAYTAFN-ELTAFLVFAQLMLDYHIGAASIARSLASYVVSILE 120 (528)
Q Consensus 59 a~~~ael~~~~P~~~Gg~y~~~~~~~g-~~~gf~~gw~~~l~~~~~~a~~~~~~~~~~~~~~~ 120 (528)
.+.+++--++... =..++|.++-|| +....+.+....+...........+.+..++.+++
T Consensus 117 ~~~~a~~lr~~g~--~T~~d~l~~Rf~s~~~r~laai~~i~~~~~yl~~q~~g~g~il~~l~g 177 (549)
T PRK12488 117 LFLIAERLRNLGK--YTFADVVSYRLAQGPVRLTAAFGTLTVVLMYLVAQMVGAGKLIELLFG 177 (549)
T ss_pred HHHHHHHHHHCCC--cchHHHHHHHcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3445554444332 366677777676 56777777776666666677777777777766643
No 91
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=95.70 E-value=3.9 Score=44.15 Aligned_cols=61 Identities=7% Similarity=-0.126 Sum_probs=34.4
Q ss_pred HHHHHHHHhccCCCCCCchhhhhHHHhc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009714 58 NALCYAELASRFPAVVGGAYLYAYTAFN-ELTAFLVFAQLMLDYHIGAASIARSLASYVVSILE 120 (528)
Q Consensus 58 ~a~~~ael~~~~P~~~Gg~y~~~~~~~g-~~~gf~~gw~~~l~~~~~~a~~~~~~~~~~~~~~~ 120 (528)
..+.++|--++.-. =...+|.++=|+ |....+.+....+...........+.+..++.+++
T Consensus 116 ~~~~~a~~lrr~g~--~T~~d~l~~Rf~s~~~r~l~ai~~i~~~~~yl~~ql~g~g~il~~~~g 177 (549)
T TIGR02711 116 ILFLIAERLRNLGR--YTFADVASYRLKQRPIRILSACGSLVVVALYLIAQMVGAGKLIELLFG 177 (549)
T ss_pred HHHHHHHHHHHcCC--ccHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 34445665444322 345555556565 55666666655555555566666666666666543
No 92
>PLN00148 potassium transporter; Provisional
Probab=95.39 E-value=0.56 Score=51.33 Aligned_cols=215 Identities=9% Similarity=0.029 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCC---------ChHHHHHHHHHHH
Q 009714 149 ILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSPFAPN---------GFKEILTGATVVF 219 (528)
Q Consensus 149 l~~~~~~~~~~~ln~~g~~~~~~~~~i~~~~~i~~l~~~~i~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~ 219 (528)
.+++++++.++.+.-+|....+++..-...+=.+.+..+.+..+.+.|++-+..+.|. +..+ +..+..++
T Consensus 199 ~is~~ILv~LF~vQ~~GT~kVg~~FgPIm~lWf~~i~~iGiyni~~~~p~Vl~AlnP~y~~~ff~~~~~~g-~~~LGgV~ 277 (785)
T PLN00148 199 LLACVILVGLFALQHCGTHRVAFMFAPIVIIWLLSIGSIGLYNIIHWNPKIIHALSPYYIIKFFRVTGKDG-WISLGGIL 277 (785)
T ss_pred hHHHHHHHHHHHHhccccHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCHHHhhhcCHHHHHHHHHhCCCce-EEeecchh
Confidence 4788888888999999987777654333333333333333444444455555444442 2211 11233467
Q ss_pred HhhhhhHHHhhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCcHHHHHHHHcChhHHHHHHHHHH
Q 009714 220 FAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAFASRGLKYVSVLISFGA 299 (528)
Q Consensus 220 ~~f~G~e~~~~~a~E~k~p~k~ip~ai~~s~~~~~i~y~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~i~~~~~ 299 (528)
.+.+|.|+.- |+-=.-.+|.+-+|-..-+.-+.++--+.+.+....-|. +.++|+... ..++..+-+.+.+
T Consensus 278 L~iTGaEALy--ADlGHFg~~~Iriaw~~~V~P~L~L~Y~GQaA~ll~~p~---~~~npFf~~----iP~~~~~P~~vlA 348 (785)
T PLN00148 278 LSITGTEAMF--ADLGHFTAASIRLAFATVIYPCLVVQYMGQAAFLSKNIP---SIPNSFYDS----IPDPVFWPVFVIA 348 (785)
T ss_pred eeccchhhhh--hhccCCCccceEEeeeehHHHHHHHHHcchHHHHhcCcc---cccCcHHHh----CCchhHHHHHHHH
Confidence 7889999753 232334456666665444444444433344444333331 124454332 2334444444444
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhhcCCCCch-hhhhhcCCc-c---cchHHHHHHHHHHHHHHH-hhCHHHHHHHHHHHHH
Q 009714 300 VAGLTTTLLVGLYVQSRLYLGLGRDGLLPS-IFAKVHPKR-H---TPVHSQVWVGIVAGILAG-LFNVRVLSHILSVGTL 373 (528)
Q Consensus 300 ~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~-~~~~~n~r~-~---~P~~a~l~~~~i~~~~~~-~~~~~~l~~~~~~~~l 373 (528)
.++..-+..+.+.++=.+..+.-+-|.+|+ ..-+++++. | .|..- ++..+.++.+.+ +-+.+.+.+..+++..
T Consensus 349 tlAtIIASQA~ISg~FSi~~Qai~Lg~fPrvkIvhTS~~~~GQIYIP~vN-w~Lmv~~i~vv~~F~~s~~la~AYGiAV~ 427 (785)
T PLN00148 349 TLAAIVGSQAVITATFSIVKQCHALGCFPRVKVVHTSKHIYGQIYIPEIN-WILMILTLAVTIGFRDTTLIGNAYGLACM 427 (785)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCCccCCceeeHHHH-HHHHHHHHHhheeeccchhHHHhhhhhee
Confidence 444444445555555556666667789993 334444332 2 45432 333333333322 3366777777777664
Q ss_pred H
Q 009714 374 T 374 (528)
Q Consensus 374 ~ 374 (528)
.
T Consensus 428 ~ 428 (785)
T PLN00148 428 T 428 (785)
T ss_pred e
Confidence 3
No 93
>PLN00151 potassium transporter; Provisional
Probab=95.21 E-value=0.54 Score=51.55 Aligned_cols=220 Identities=11% Similarity=0.016 Sum_probs=110.3
Q ss_pred hHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCC---------ChHHHHHHHHHH
Q 009714 148 NILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSPFAPN---------GFKEILTGATVV 218 (528)
Q Consensus 148 ~l~~~~~~~~~~~ln~~g~~~~~~~~~i~~~~~i~~l~~~~i~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~ 218 (528)
..+++++++.++.+.-+|....+++..-...+=.+.+..+.+..+.+.|++-+..+.|. +..+ +..+.-+
T Consensus 275 V~Is~~ILv~LF~~Q~~GT~kVg~~FgPImllWFl~i~~iGiynI~~~~p~Vl~AlnP~Y~~~Ff~~~~~~g-w~~LGgV 353 (852)
T PLN00151 275 VMISVAFLVILFSVQRFGTSKVGFAFGPALALWFCSLGGIGIYNLVKYDSSVFRAFNPVYIYYFFKRNSTKA-WSALGGC 353 (852)
T ss_pred hhHHHHHHHHHHHHHhccchhhhhhhccHHHHHHHHHHHHHHHHHHhcCHHHHhhhCHHHHHHHHHhCCCce-EEEecce
Confidence 34788888889999999987777654333333333333333444444445444444442 1111 1123345
Q ss_pred HHhhhhhHHHhhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCcHHHHHHHHcChhHHHHHHHHH
Q 009714 219 FFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAFASRGLKYVSVLISFG 298 (528)
Q Consensus 219 ~~~f~G~e~~~~~a~E~k~p~k~ip~ai~~s~~~~~i~y~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~i~~~~ 298 (528)
+.+++|.|+.. |+-=.-.+|.+-.|-..-+.-+.++--+.+.+....-|. +..+|+.. ...+++.+-+.+.
T Consensus 354 vLciTGaEALf--ADLGHFg~~sIqiaw~~~V~P~LlL~Y~GQaA~L~~~p~---~~~npFy~----svP~~~~wP~~vl 424 (852)
T PLN00151 354 VLCATGSEAMF--ADLGYFSVRSIQLAFTCLVLPCLLLAYMGQAAYLMKNPD---SAEQIFFS----SVPSSLFWPVFLI 424 (852)
T ss_pred eeeeccchhhh--cccCCCCccceeeeehhhHHHHHHHHHcchHHHHhcCcc---cccCcHHH----hCCchhHHHHHHH
Confidence 67889999653 232334456666555444444444433333333333231 12344432 2333444444444
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHhhcCCCCch-hhhhhcCCcc----cchHHHHHHHHHHHHHHH-hhCHHHHHHHHHHHH
Q 009714 299 AVAGLTTTLLVGLYVQSRLYLGLGRDGLLPS-IFAKVHPKRH----TPVHSQVWVGIVAGILAG-LFNVRVLSHILSVGT 372 (528)
Q Consensus 299 ~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~-~~~~~n~r~~----~P~~a~l~~~~i~~~~~~-~~~~~~l~~~~~~~~ 372 (528)
+.++..-+..+.+.++=.++.+.-+-|.+|+ ..-+++++.. .|..- ++..+.++.+.+ +-+.+.+.+..+++.
T Consensus 425 AtlAaIIASQA~ISgtFSii~Qai~Lg~fPRvkIvHTS~~~~GQIYIP~vN-w~Lmv~~i~v~l~F~~s~~l~~AYGiAV 503 (852)
T PLN00151 425 ANLAALIASRAMTTATFSCIKQSMALGCFPRLKIIHTSRKFMGQIYIPVIN-WFLLVMCLVVVCSFRSITDIGNAYGIAE 503 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEeCCCccCCceeeHHHH-HHHHHHHHhheeeecCHHHHHHHhhhhh
Confidence 4444444444555555555566666789993 3334443322 44432 333333333332 336678888777776
Q ss_pred HHHHHH
Q 009714 373 LTGYSV 378 (528)
Q Consensus 373 l~~y~~ 378 (528)
.....+
T Consensus 504 ~~vM~i 509 (852)
T PLN00151 504 VGVMMV 509 (852)
T ss_pred hhhhhH
Confidence 543333
No 94
>PLN00150 potassium ion transporter family protein; Provisional
Probab=95.18 E-value=0.45 Score=51.97 Aligned_cols=218 Identities=12% Similarity=0.084 Sum_probs=110.1
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCC---------ChHHHHHHHHHHH
Q 009714 149 ILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSPFAPN---------GFKEILTGATVVF 219 (528)
Q Consensus 149 l~~~~~~~~~~~ln~~g~~~~~~~~~i~~~~~i~~l~~~~i~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~ 219 (528)
.+++++++.++.+.-+|....++...-...+=.+.+..+.+..+.+.|++-+..+.|. +..+ +..+.-++
T Consensus 216 ~is~~ILv~LF~iQ~~GT~kVg~~FgPIm~~Wf~~i~~iGiyni~~~~p~Vl~AlnP~y~~~ff~~~~~~g-~~~LG~V~ 294 (779)
T PLN00150 216 IISCVILVILFSLQRFGTHKVSFLFAPIFLCWFFSLALIGCYNIIKWDKSVFLAFNPLYIVSFFIRNGRQG-WESLGGIV 294 (779)
T ss_pred hhHHHHHHHHHHHHhccchhhhhhhccHHHHHHHHHHHHHHHHHHhcCHHHHhhcCHHHHHHHHHhCCCce-EEEeccee
Confidence 4788888888999999987766653333333233333333333334445444444442 2211 11233467
Q ss_pred HhhhhhHHHhhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCcHHHHHHHHcChhHHHHHHHHHH
Q 009714 220 FAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAFASRGLKYVSVLISFGA 299 (528)
Q Consensus 220 ~~f~G~e~~~~~a~E~k~p~k~ip~ai~~s~~~~~i~y~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~i~~~~~ 299 (528)
.+.+|.|+.- |+-=.-.+|.+-+|-..-+.-+.++--+.+.+....-|. +.++|+... ..+++.+-+.+.+
T Consensus 295 L~iTGaEALy--ADlGHFg~~~Iriaw~~~V~P~LlL~Y~GQaA~ll~~p~---~~~npFf~~----iP~~~~~P~~vlA 365 (779)
T PLN00150 295 LCMTGTEAMF--ADLGHFTVKSMQIAFTSLVYPCLLLTYLGQAAYLVKHME---DVNDPFYRS----LPKPIYWPIFVLA 365 (779)
T ss_pred eeecchhhhh--ccccCCCccceeeeehhhHHHHHHHHHcchHHHHhcCcc---cccCcHHHh----CCchhHHHHHHHH
Confidence 8889999753 233334456666665544444444433333333333231 123454332 3334444444444
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhhcCCCCch-hhhhhcCCcc----cchHHHHHHHHHHHHHHH-hhCHHHHHHHHHHHHH
Q 009714 300 VAGLTTTLLVGLYVQSRLYLGLGRDGLLPS-IFAKVHPKRH----TPVHSQVWVGIVAGILAG-LFNVRVLSHILSVGTL 373 (528)
Q Consensus 300 ~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~-~~~~~n~r~~----~P~~a~l~~~~i~~~~~~-~~~~~~l~~~~~~~~l 373 (528)
.++..-+..+.+.++=.+..+.-+-|.+|+ ..-+++++.+ .|..- ++..+.++++.+ +-+.+.+.+..+++..
T Consensus 366 tlAtIIASQA~ISg~FSi~~Qai~Lg~fPrvkI~hTS~~~~GQIYIP~vN-w~Lmv~~i~vv~~F~~s~~l~~AYGiAV~ 444 (779)
T PLN00150 366 TCSAMIASQAMISATFSIVKQAMALGCFPRVKIVHTSNKVHGQVYIPEIN-WILMVLCLVITAGFRDTDEIGNAYGIAVV 444 (779)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCcccCCceeeHHHH-HHHHHHHHhheEEecChHHHHHHhhhhee
Confidence 555544455555555566666667799994 3334443332 44332 233333333222 3366778777777765
Q ss_pred HHHH
Q 009714 374 TGYS 377 (528)
Q Consensus 374 ~~y~ 377 (528)
....
T Consensus 445 ~vM~ 448 (779)
T PLN00150 445 GVMI 448 (779)
T ss_pred hhhH
Confidence 4333
No 95
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=95.07 E-value=4.8 Score=41.42 Aligned_cols=67 Identities=16% Similarity=0.049 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHhccCCCCCC-chhhhhHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009714 52 GAASVLNALCYAELASRFPAVVG-GAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSI 118 (528)
Q Consensus 52 ~l~~~~~a~~~ael~~~~P~~~G-g~y~~~~~~~g~~~gf~~gw~~~l~~~~~~a~~~~~~~~~~~~~ 118 (528)
-++.-+.+...-|++.+.-..+| |.-+-.++-++|.+++.......++.....-.+..+.+-.++.+
T Consensus 54 ills~l~~~~~Q~~~arLgivTG~~laq~ir~~y~~~~~~~~~~~~~i~~~at~iae~~G~aial~ll 121 (416)
T COG1914 54 ILLSNLMAYILQELSARLGIVTGKGLAEAIRERYLPGLGILLWILAEIAGIATDIAEVAGIAIALNLL 121 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555433233 45666677788887776655444444444334444444444433
No 96
>PRK09950 putative transporter; Provisional
Probab=95.06 E-value=5.6 Score=42.08 Aligned_cols=88 Identities=8% Similarity=-0.005 Sum_probs=44.8
Q ss_pred HHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCCCCchhhhhhcC-CcccchHHHHHHHHHHHHHH
Q 009714 278 PLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHP-KRHTPVHSQVWVGIVAGILA 356 (528)
Q Consensus 278 p~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~~~~~n~-r~~~P~~a~l~~~~i~~~~~ 356 (528)
.+.+.++... ...++....++..+....+..-+++-.+-.++.+|.-++. || |.+.=.++ +..++++..+.
T Consensus 390 a~~~~l~~lP---~~~i~~~l~~vl~~if~vTs~DS~s~vla~~ts~g~~~~~----~P~~~~ri~W~-i~~g~ia~~Ll 461 (506)
T PRK09950 390 AVQQLLSSLP---AGKLFLAAYLGIMIIFLASHMDAVAYTMAATSTRNLREGD----DPDRGLRLFWC-VVITLIPLSIL 461 (506)
T ss_pred HHHHHHHhCc---HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHcCCCCCCC----CCCcchhHHHH-HHHHHHHHHHH
Confidence 4445555554 3334444444444445555556667777777765543311 22 22222344 34445555555
Q ss_pred HhhC-HHHHHHHHHHHHH
Q 009714 357 GLFN-VRVLSHILSVGTL 373 (528)
Q Consensus 357 ~~~~-~~~l~~~~~~~~l 373 (528)
...+ ++.+.+...++.+
T Consensus 462 ~~gG~l~~lQ~~~ii~al 479 (506)
T PRK09950 462 FTGASLDTMKTTVVLTAL 479 (506)
T ss_pred HhCCcHHHHHHHHHHHHH
Confidence 5555 7777666665554
No 97
>PRK09928 choline transport protein BetT; Provisional
Probab=94.56 E-value=8.7 Score=41.95 Aligned_cols=101 Identities=10% Similarity=-0.103 Sum_probs=49.9
Q ss_pred HHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCCCCchhhhhhcCCcccchHHHHHHHHHHHHHHH
Q 009714 278 PLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAG 357 (528)
Q Consensus 278 p~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~~~~~n~r~~~P~~a~l~~~~i~~~~~~ 357 (528)
.+.+.++.... ..++....++..+....+..-+.+-.+-.++..|.-|+. + .||...=.++ +..++++..+..
T Consensus 397 alf~~l~~lP~---~~i~~~l~~il~~iFfvTSaDS~s~Vla~lts~g~~~~~--~-pp~~~RifW~-v~ig~la~~LL~ 469 (679)
T PRK09928 397 GFYSLLAQYPA---FTFSASVATITGLLFYVTSADSGALVLGNFTSKLKDINS--D-APNWLRVFWS-VAIGLLTLGMLM 469 (679)
T ss_pred HHHHHHHhCcH---HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHcCCCCCCC--C-CCcceeeHHH-HHHHHHHHHHHH
Confidence 34445555543 233333333333334444555566777777766543311 1 1133333344 345556666666
Q ss_pred hhCHHHHHHHHHHHHH---HHHHHHHHHHHh
Q 009714 358 LFNVRVLSHILSVGTL---TGYSVVSACVIA 385 (528)
Q Consensus 358 ~~~~~~l~~~~~~~~l---~~y~~~~~~~~~ 385 (528)
..+++.+.+...++.+ +...+.+.+.++
T Consensus 470 ~GGL~aLQt~sii~alPf~~I~ll~~~sl~k 500 (679)
T PRK09928 470 TNGISALQNTTVIMGLPFSFVIFFVMAGLYK 500 (679)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777776666554 333344444443
No 98
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=92.57 E-value=18 Score=39.16 Aligned_cols=62 Identities=15% Similarity=0.059 Sum_probs=42.7
Q ss_pred HHHHHHHHHhccCCCCCCchhhhhHHHhc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009714 57 LNALCYAELASRFPAVVGGAYLYAYTAFN-ELTAFLVFAQLMLDYHIGAASIARSLASYVVSILE 120 (528)
Q Consensus 57 ~~a~~~ael~~~~P~~~Gg~y~~~~~~~g-~~~gf~~gw~~~l~~~~~~a~~~~~~~~~~~~~~~ 120 (528)
..++.+++.-++.. .=..++|.++-|| +.....++....+......+......+..++.+.+
T Consensus 80 ~~~~~~~p~~rr~~--~~T~~e~l~~Rf~s~~~~~~~~i~~~~~~~~~l~~ql~~~~~~l~~~~g 142 (552)
T TIGR03648 80 LLALLLAPYLRKFG--KYTVPDFIGDRYYSNTARLVAVICAIFISFTYVAGQMRGVGVVFSRFLE 142 (552)
T ss_pred HHHHHHHHHHHHCC--CccHHHHHHHHhCCCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 35566677777765 3688999999898 45677777666666666666666666666666543
No 99
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=92.54 E-value=3.4 Score=43.65 Aligned_cols=61 Identities=11% Similarity=0.134 Sum_probs=31.6
Q ss_pred HhhcC-CCCCCCCCCCccch----hHHHHHHHHHHHHhcC----------CH--HHHHHHHHHHHHHHHHHHhhcccc
Q 009714 449 CLRHG-YSDPPGFSCPGVPL----LPAVSIFFNLFLFAQL----------HY--EAWWRFVILSFISIGLYAFYGQYH 509 (528)
Q Consensus 449 ~~~~~-~~~~~~~~~p~~p~----~~~~~~~~~~~~~~~~----------~~--~~~~~~~~~~~~g~~~y~~~~~~~ 509 (528)
+.|++ .+.+|+||.|+.++ ...++++.+++.+... +. .+...+++.+++..+.|+.+++|+
T Consensus 381 ~lr~~~~~~~rpf~~p~g~~g~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~ny~~~~~~~~~~~~~~~~~~~~~~~ 458 (474)
T TIGR03813 381 YLRYSQPDRPRPYRIPGGLAGMWFIGGLGFVGSALAFVLSFIPPSQIGTGSPTRYVGLLIGLAALFVTAPFLIYARRK 458 (474)
T ss_pred HHHhcCCCCCCCeEecCCccchhHHHHHHHHHHHHHHheeEeCCcccCCCchHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34433 34488999988544 4445555554443311 11 123344455555666666665554
No 100
>TIGR00842 bcct choline/carnitine/betaine transport. properties inherent to their polypeptide chains.
Probab=92.05 E-value=17 Score=37.89 Aligned_cols=89 Identities=12% Similarity=0.014 Sum_probs=42.1
Q ss_pred HHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCCCCchhhhhhcCCcccchHHHHHHHHHHHHHHH
Q 009714 278 PLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAG 357 (528)
Q Consensus 278 p~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~~~~~n~r~~~P~~a~l~~~~i~~~~~~ 357 (528)
.+.+.+++... ..++....++..+....+..-+++-.+-.++.++.-++. +-+ |.+.=.+++ ..+.++..+..
T Consensus 344 a~~~~l~~lP~---~~i~~~l~~il~~if~vTs~DS~s~vla~~~s~~g~~~~--ep~-~~~ri~W~v-~ig~~a~~ll~ 416 (453)
T TIGR00842 344 ALFGLLQALPL---GTITSALALIVIIIFFITSADSGALVLANTSSRGGQLGE--EPP-KWVRVFWAV-AIGLIALVLLF 416 (453)
T ss_pred HHHHHHHHCcH---HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCCCCCC--CCC-cccchHHHH-HHHHHHHHHHH
Confidence 44455555543 333344444444444445555566666666443322210 001 222333443 34555555555
Q ss_pred hhC-HHHHHHHHHHHHH
Q 009714 358 LFN-VRVLSHILSVGTL 373 (528)
Q Consensus 358 ~~~-~~~l~~~~~~~~l 373 (528)
..+ ++.+.++..++.+
T Consensus 417 ~gG~l~~lQ~~~ii~al 433 (453)
T TIGR00842 417 SGGSLAALQTTAIIAAL 433 (453)
T ss_pred hcCcHHHHHHHHHHHHH
Confidence 556 7777666666554
No 101
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=91.53 E-value=8.4 Score=41.01 Aligned_cols=12 Identities=17% Similarity=0.434 Sum_probs=8.0
Q ss_pred cCCcccchHHHH
Q 009714 335 HPKRHTPVHSQV 346 (528)
Q Consensus 335 n~r~~~P~~a~l 346 (528)
|||++.|.....
T Consensus 239 ~p~~~~p~ai~~ 250 (496)
T PRK15238 239 NPEKNFPKGIII 250 (496)
T ss_pred CCCccccHHHHH
Confidence 677788865443
No 102
>PRK09395 actP acetate permease; Provisional
Probab=91.09 E-value=25 Score=37.93 Aligned_cols=46 Identities=4% Similarity=-0.156 Sum_probs=30.2
Q ss_pred chhhhhHHHhc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009714 75 GAYLYAYTAFN-ELTAFLVFAQLMLDYHIGAASIARSLASYVVSILE 120 (528)
Q Consensus 75 g~y~~~~~~~g-~~~gf~~gw~~~l~~~~~~a~~~~~~~~~~~~~~~ 120 (528)
..++|.++-|| +......+....+...........+.+..++.+++
T Consensus 133 T~~d~l~~Rygs~~~r~l~av~~iv~~~~yl~~q~~g~g~il~~~~g 179 (551)
T PRK09395 133 TFADVASYRLKQGPIRTLSACGSLVVVALYLIAQMVGAGKLIQLLFG 179 (551)
T ss_pred cHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 45556667777 56777777766666666666667776666666543
No 103
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=90.82 E-value=26 Score=37.66 Aligned_cols=52 Identities=17% Similarity=0.206 Sum_probs=44.6
Q ss_pred cchhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 009714 143 GTLSINILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFE 194 (528)
Q Consensus 143 ~~~~~~l~~~~~~~~~~~ln~~g~~~~~~~~~i~~~~~i~~l~~~~i~~~~~ 194 (528)
+..+....-..++++..++|..|+|..+.........|++.++.+++.++.-
T Consensus 151 ~~~~~~~~~~~fla~~v~in~~gv~~~ge~ef~~~~~kvl~~v~~~Il~iVi 202 (554)
T KOG1286|consen 151 DTVNPGGWIPDFLAFILIINLFGVLAYGEVEFSLAFNKILTAVGFIILAIVI 202 (554)
T ss_pred cCCCCCccHHHHHHHHHHHHHHHHhhccceeehHHHHHHHHHHHHHHhheee
Confidence 3444566677888999999999999999999999999999999999888765
No 104
>COG3158 Kup K+ transporter [Inorganic ion transport and metabolism]
Probab=88.95 E-value=17 Score=38.38 Aligned_cols=228 Identities=16% Similarity=0.142 Sum_probs=105.5
Q ss_pred hHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhccc--ccccCCCCCCCC---------ChHHHHHHHH
Q 009714 148 NILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFE--VDVSNWSPFAPN---------GFKEILTGAT 216 (528)
Q Consensus 148 ~l~~~~~~~~~~~ln~~g~~~~~~~~~i~~~~~i~~l~~~~i~~~~~--~~~~~~~~~~~~---------~~~~~~~~~~ 216 (528)
..+++++++.++.+.-.|....+++ +.-++++-.+.+...|+.+ .|++-....+|. ++.++. ...
T Consensus 149 vpitl~IL~~LF~iQ~~GT~~Vg~~---FGPVm~lWF~~l~~~Gl~~i~~~p~IL~AiNP~yAi~fl~~~~~~gf~-vLG 224 (627)
T COG3158 149 VPITLIILVLLFLIQRFGTGRVGKL---FGPVMLLWFLALAVLGLINIIDDPEILRAINPYYAVHFLLEEGFVGFF-VLG 224 (627)
T ss_pred HHHHHHHHHHHHHHhcccchhhhhh---hccHHHHHHHHHHHHHHHHHhcCHHHHHHhChHHHHHHHHhCCceEEE-Eee
Confidence 3578888888899999998877775 4444444444444444443 122222222221 221111 122
Q ss_pred HHHHhhhhhHHHhhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCcHHHHHHHHcChhHHHHHHH
Q 009714 217 VVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAFASRGLKYVSVLIS 296 (528)
Q Consensus 217 ~~~~~f~G~e~~~~~a~E~k~p~k~ip~ai~~s~~~~~i~y~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~i~~ 296 (528)
..+.+.+|-|+.- |+-=+--+|.+-+|=..-..=+.++.-+.+-+....-|. ...+|+.. .. ..|..+-+.
T Consensus 225 aVfLavTGaEALY--ADmGHfGr~pI~~AWf~vv~P~L~LNY~GQGA~vL~~p~---a~~npFF~---~~-P~~aliP~v 295 (627)
T COG3158 225 AVFLAVTGAEALY--ADMGHFGRKPIRVAWFFVVLPCLLLNYFGQGALLLSNPE---AIGNPFFL---LA-PDWALIPLV 295 (627)
T ss_pred eeeeeeccHHHHH--hhccccCCccHHHHHHHHHHHHHHHHHccccceeccCcc---cccCcHHH---hC-hhhHHHHHH
Confidence 3567788988653 222233467776664443332333322222222222221 12344322 22 233332222
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhhcCCCCch-hhhhhcCC-cc---cchHHHHHHHHHHHHHHHhhCHHHHHHHHHHH
Q 009714 297 FGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPS-IFAKVHPK-RH---TPVHSQVWVGIVAGILAGLFNVRVLSHILSVG 371 (528)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~-~~~~~n~r-~~---~P~~a~l~~~~i~~~~~~~~~~~~l~~~~~~~ 371 (528)
+.+..++.-+..+.+.++=-+..+.-|-|.+|+ ...+++++ .| +|..-.++...+..++..+.+.+.+.+..+++
T Consensus 296 iLAT~ATVIASQAvISGaFSLtrQAi~Lg~lPrm~I~~TSe~~~GQIYiP~VN~~L~~~V~~~vl~F~~S~~LAaAYGiA 375 (627)
T COG3158 296 ILATAATVIASQAVISGAFSLTRQAIRLGYLPRMRIRHTSETESGQIYIPAVNWLLLVAVVFVVLGFGSSSNLAAAYGIA 375 (627)
T ss_pred HHHHHHHHHHHHHHHhhHhHHHHHHHHhCCCCceEEEecCCcccceEEehHHHHHHHHHHhheeeEecChHHHHHhhChh
Confidence 333333333333333333334445566799994 34444433 22 45544333333333333344667777777766
Q ss_pred HHHHHHHH-HHHHHhhhh
Q 009714 372 TLTGYSVV-SACVIALRW 388 (528)
Q Consensus 372 ~l~~y~~~-~~~~~~~r~ 388 (528)
..-...++ .+....+|+
T Consensus 376 VTgtM~iTt~L~~~~~~~ 393 (627)
T COG3158 376 VTGTMVITTILLTVVMRK 393 (627)
T ss_pred eeehhHHHHHHHHHHHHH
Confidence 64444433 333444443
No 105
>PRK03356 L-carnitine/gamma-butyrobetaine antiporter; Provisional
Probab=87.28 E-value=44 Score=35.49 Aligned_cols=100 Identities=15% Similarity=0.062 Sum_probs=50.4
Q ss_pred HHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCCCCchhhhhhcC-CcccchHHHHHHHHHHHHHH
Q 009714 278 PLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHP-KRHTPVHSQVWVGIVAGILA 356 (528)
Q Consensus 278 p~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~~~~~n~-r~~~P~~a~l~~~~i~~~~~ 356 (528)
.+.+.++.... ..++....++..+....+..-+++-.+-.++.+|.-++. || |...=.++ +..++++..+.
T Consensus 393 alf~~l~~lPl---~~i~~~l~~il~~if~vTsaDS~t~vla~~ts~g~~~~~----~p~~~~ri~W~-v~ig~ia~~Ll 464 (504)
T PRK03356 393 AIIETWAALPL---STATMWGFFILCFIATVTLINACSYTLAMSTCREVRDGE----EPPLLVRIGWS-ILVGIIGIVLL 464 (504)
T ss_pred HHHHHHHHCcH---HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHcCCCCCCC----CCCcchhhHHH-HHHHHHHHHHH
Confidence 44455555542 333444444444444455556667777777776543211 22 22233344 34455555555
Q ss_pred HhhCHHHHHHHHHHHHH---HHHHHHHHHHHh
Q 009714 357 GLFNVRVLSHILSVGTL---TGYSVVSACVIA 385 (528)
Q Consensus 357 ~~~~~~~l~~~~~~~~l---~~y~~~~~~~~~ 385 (528)
...+++.+.+...++.+ +...+.+.+.++
T Consensus 465 ~~GGl~~lQt~sii~alPf~~i~~l~~~sl~k 496 (504)
T PRK03356 465 ALGGLKPIQTAIIAGGCPLFFVNIMVTLSFIK 496 (504)
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55577766666655553 333334444443
No 106
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism]
Probab=83.44 E-value=53 Score=33.08 Aligned_cols=216 Identities=13% Similarity=0.131 Sum_probs=114.5
Q ss_pred chhhhhH-HHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHH
Q 009714 75 GAYLYAY-TAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPI 153 (528)
Q Consensus 75 g~y~~~~-~~~g~~~gf~~gw~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 153 (528)
...++.+ |.-++..-+..+....+.+...+...-.+.+..++...+. + + .....+.+..
T Consensus 107 tI~D~l~~RY~s~fl~~las~~Lifff~~~m~~qfiGgarLlE~~~gi--------d-Y-----------~tgL~ifa~~ 166 (473)
T COG4145 107 TINDLLFARYQSRFLVWLASLSLIFFFVGAMTVQFIGGARLLETALGI--------D-Y-----------TTGLLIFAVS 166 (473)
T ss_pred eHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHCC--------C-c-----------hhhHHHHHHH
Confidence 3444443 3456788888998888888888888888888888876543 1 0 1111122222
Q ss_pred HHHHHHHHHHhhhhH---HHHHHHHHHHHHHHHHHHHHhh---hcc-------cccccCCCCCCCCChHHHHHHHHHHHH
Q 009714 154 LLALLTIVLCWGVGE---SSVLNSCMTVVKVIIVIVVIFA---GAF-------EVDVSNWSPFAPNGFKEILTGATVVFF 220 (528)
Q Consensus 154 ~~~~~~~ln~~g~~~---~~~~~~i~~~~~i~~l~~~~i~---~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (528)
+... -..-|.|. .-.+|-....+.-..+.+-.+- |+- ..|++-.+|...++ ..-..+...+|
T Consensus 167 V~iY---t~fGGFRAvvltD~IQG~vmligtv~Lf~~~i~~~GG~~~av~tl~~iDp~lv~P~~~~~--~l~~~Fm~Sfw 241 (473)
T COG4145 167 VAIY---TAFGGFRAVVLTDTIQGLVMLIGTVVLFVGVIYAGGGLSNAVETLTTIDPGLVTPQGADD--ILDPPFMASFW 241 (473)
T ss_pred HHHH---HhhcceeeeehHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHhCCccccCCCCCcc--cccchHHHHHH
Confidence 2222 22344444 4445554444433333332221 111 12333333322222 11222223334
Q ss_pred hh-----hhhHHHhhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHHH--HHhccccccCCCCcHHHHHHHHcChhHHHH
Q 009714 221 AY-----VGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLV--LTGMVPYKFLDEDAPLSDAFASRGLKYVSV 293 (528)
Q Consensus 221 ~f-----~G~e~~~~~a~E~k~p~k~ip~ai~~s~~~~~i~y~l~~~~--~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 293 (528)
.. .|--....-.-..|| +|.+.++++++.+++.++-+.+-.+ ....+-+|....|.-++..+-+...|...-
T Consensus 242 ilv~~gvlglP~t~vr~ia~kD-skaih~gmiigt~vi~il~~gmhl~G~~graViPdlt~~D~Vip~lalkvlpp~~ag 320 (473)
T COG4145 242 ILVCFGVLGLPHTAVRCIAFKD-SKAIHRGMIIGTIVIAILMLGMHLAGALGRAVIPDLTVVDLVIPTLALKVLPPFAAG 320 (473)
T ss_pred HHHHHHHhcCcHHHHHHHhccc-hhHHhcCcchHHHHHHHHHHHHHHhhhhhhhhcCCCCccchhHHHHHHHhcchHHHH
Confidence 44 443333444444577 4889999999988887765444332 222222333344555566666667777777
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHH
Q 009714 294 LISFGAVAGLTTTLLVGLYVQSR 316 (528)
Q Consensus 294 i~~~~~~~~~~~~~~~~~~~~sR 316 (528)
++..+...+..++.++.+.-.|-
T Consensus 321 ifl~apmaAiMSTIds~L~~~ss 343 (473)
T COG4145 321 IFLAAPMAAIMSTINSQLLQSSS 343 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777887777655443
No 107
>COG1292 BetT Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane]
Probab=76.29 E-value=1.1e+02 Score=32.46 Aligned_cols=87 Identities=16% Similarity=0.119 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCC-CCchhhhhhcCCcccchHHHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q 009714 294 LISFGAVAGLTTTLLVGLYVQSRLYLGLGRDG-LLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLFNVRVLSHILSVGT 372 (528)
Q Consensus 294 i~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg-~lP~~~~~~n~r~~~P~~a~l~~~~i~~~~~~~~~~~~l~~~~~~~~ 372 (528)
+.....++-...-..+..-+.+=++-.++..| .-|+..-|+- ++ +..+++...+....+++.+.+..-+..
T Consensus 406 v~~~~~~~~i~~FfiTsaDS~s~vl~~~ss~~~~~pp~~~r~~-------W~-v~~~~ia~~lL~~ggl~aLqt~~ii~a 477 (537)
T COG1292 406 LTSLLALLVIAIFFVTSADSGSYVLAMISSRGGEDPPRWVRVF-------WG-VLIGLIAAVLLLIGGLEALQTAAIITA 477 (537)
T ss_pred HHHHHHHHHHHHHHhhccchHHHHHHHHhccCCCCChHHHHHH-------HH-HHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 33333333333334455666777777777766 3343333322 33 455566666666667766666555544
Q ss_pred ---HHHHHHHHHHHHhhhh
Q 009714 373 ---LTGYSVVSACVIALRW 388 (528)
Q Consensus 373 ---l~~y~~~~~~~~~~r~ 388 (528)
.+.-++.+.+.++--+
T Consensus 478 lPF~~vll~~~~sl~k~l~ 496 (537)
T COG1292 478 LPFSLVLLVMMFSLIKDLK 496 (537)
T ss_pred ccHHHHHHHHHHHHHHHHH
Confidence 3444445555554433
No 108
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=74.85 E-value=0.96 Score=42.75 Aligned_cols=18 Identities=17% Similarity=0.233 Sum_probs=0.0
Q ss_pred hhcCCcccchHHHHHHHH
Q 009714 333 KVHPKRHTPVHSQVWVGI 350 (528)
Q Consensus 333 ~~n~r~~~P~~a~l~~~~ 350 (528)
+.+||--.|...+.+...
T Consensus 13 ~r~pr~p~~~a~l~~~~l 30 (381)
T PF05297_consen 13 RRPPRCPQPHASLLFGLL 30 (381)
T ss_dssp ------------------
T ss_pred CCCCCCCCcchhHHHHHH
Confidence 345665566665554443
No 109
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=68.47 E-value=1.3e+02 Score=29.90 Aligned_cols=69 Identities=12% Similarity=0.022 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccccCCCCcHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 009714 247 LGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLY 318 (528)
Q Consensus 247 ~~s~~~~~i~y~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l 318 (528)
..+++++++++.+....+.-....-+..+ ..+..+...++....+.....++..+++......+++-.+
T Consensus 39 ~~gIivs~vlf~~~g~vim~ig~~f~a~~---y~~~~~~v~~~~~~ki~d~~iif~lf~~~vVM~AGags~~ 107 (349)
T COG3949 39 ILGIILSTVLFTLSGAVIMTIGKKFNATS---YREILKYVSGPKFAKIIDIIIIFFLFSTAVVMLAGAGSLL 107 (349)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcccc---hHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhccchhHH
Confidence 35666667777766666554332222222 3455667777888888888888888887766665555444
No 110
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters. This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene
Probab=67.49 E-value=1.5e+02 Score=30.36 Aligned_cols=53 Identities=11% Similarity=0.086 Sum_probs=35.5
Q ss_pred HHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCCCCchhhh
Q 009714 279 LSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFA 332 (528)
Q Consensus 279 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~~~ 332 (528)
..+.++...+++...++.++.+.+-.++..+..++..=..... .+...|++++
T Consensus 282 ~~~~L~p~~G~~a~~lF~igLlaAG~sS~it~~~ag~~v~~gf-l~~~~~~~~r 334 (390)
T TIGR01197 282 IGVLLGCLFSPAAGYIFAVGLLAAGQSSGMVGTYSGQFVMEGF-LNWRWSPWLR 334 (390)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-cCCCCcHHHH
Confidence 4566677788888999999999998888887777554444333 3333344433
No 111
>PRK10655 potE putrescine transporter; Provisional
Probab=66.44 E-value=1.5e+02 Score=30.70 Aligned_cols=53 Identities=11% Similarity=0.064 Sum_probs=30.9
Q ss_pred cchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhcccccCCCCCcc
Q 009714 465 VPLLPAVSIFFNLFLFAQLHYEAWWRFVILSFISIGLYAFYGQYHADPSSDTI 517 (528)
Q Consensus 465 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~~~~~~~~~ 517 (528)
++..+++.++..++.+...-...+.......+.-++-...|..+++|++.+++
T Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~~~~~~ 436 (438)
T PRK10655 384 AKVANFIAFVGALYSFYALYSSGEEAMLYGSIVTFLGWTLYGLISPRFELKNK 436 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 45556777777777765433333333343444445555677888887766553
No 112
>PF14256 YwiC: YwiC-like protein
Probab=60.65 E-value=1e+02 Score=26.04 Aligned_cols=44 Identities=16% Similarity=0.019 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q 009714 347 WVGIVAGILAGLFNVRVLSHILSVGTLTGYSVVSACVIALRWKD 390 (528)
Q Consensus 347 ~~~~i~~~~~~~~~~~~l~~~~~~~~l~~y~~~~~~~~~~r~~~ 390 (528)
.+.++..+................+.++.|....-....+|.|+
T Consensus 9 ~Ml~~P~l~G~~~~~~w~~~~L~~aw~~~yl~~~p~~~~~k~r~ 52 (129)
T PF14256_consen 9 AMLLVPFLLGMAGGPSWAHLPLLLAWLFGYLAFYPFLLWLKQRR 52 (129)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 33334444444444444444556666777777766666665554
No 113
>COG1294 AppB Cytochrome bd-type quinol oxidase, subunit 2 [Energy production and conversion]
Probab=60.56 E-value=1.9e+02 Score=29.06 Aligned_cols=30 Identities=13% Similarity=0.273 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcCCCCC
Q 009714 364 LSHILSVGTLTGYSVVSACVIALRWKDRTSR 394 (528)
Q Consensus 364 l~~~~~~~~l~~y~~~~~~~~~~r~~~~~~~ 394 (528)
..-++.++....+.+-..+.+.++ .+.+..
T Consensus 167 f~~l~gl~~~~~~~l~Ga~~l~~k-T~g~l~ 196 (346)
T COG1294 167 FALLCGLGLVLMYVLHGAAWLLLK-TEGALQ 196 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-hccHHH
Confidence 344555666677777777777776 444443
No 114
>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]
Probab=59.66 E-value=1.4e+02 Score=29.18 Aligned_cols=64 Identities=16% Similarity=0.152 Sum_probs=35.5
Q ss_pred HHHHHhhcCCCCchhhhhhcCC----c-ccchHHHHHHHHHHHHHHHh--hCHHHHHHHHHHHHHHHHHHH
Q 009714 316 RLYLGLGRDGLLPSIFAKVHPK----R-HTPVHSQVWVGIVAGILAGL--FNVRVLSHILSVGTLTGYSVV 379 (528)
Q Consensus 316 R~l~a~a~dg~lP~~~~~~n~r----~-~~P~~a~l~~~~i~~~~~~~--~~~~~l~~~~~~~~l~~y~~~ 379 (528)
-..+.+-.|+..-+...|+.+| . =.|..+..+..+++.+-..+ ...+.+........++.|...
T Consensus 68 a~a~N~~~DrDID~~M~RT~~RP~~~G~i~p~~al~fgl~L~~~g~~~l~~~vn~laa~l~~~gi~~Yv~v 138 (304)
T COG0109 68 AGAFNMYIDRDIDALMERTRKRPLVTGLISPREALAFGLVLGVAGFSLLWFLVNLLAAVLGLFGIFFYVVV 138 (304)
T ss_pred HHHHhhhhhhhHHHhhhhccCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3344555566666555555422 1 15677776666665443332 234666667777777777654
No 115
>COG4025 Predicted membrane protein [Function unknown]
Probab=58.85 E-value=70 Score=29.79 Aligned_cols=15 Identities=13% Similarity=0.120 Sum_probs=12.6
Q ss_pred HHHHHHHhhcCCCCc
Q 009714 314 QSRLYLGLGRDGLLP 328 (528)
Q Consensus 314 ~sR~l~a~a~dg~lP 328 (528)
.-|-...+.||+.+|
T Consensus 56 ~ve~v~e~~re~~i~ 70 (284)
T COG4025 56 KVEKVMEKVREFQIP 70 (284)
T ss_pred HHHHHHHHHhcCCCc
Confidence 458888999999987
No 116
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....
Probab=57.73 E-value=2.7e+02 Score=29.85 Aligned_cols=98 Identities=13% Similarity=0.185 Sum_probs=51.4
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhccccc---------ccCCCCCCCCChHHHHHHHHHHHHhh-hhhHHH
Q 009714 159 TIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVD---------VSNWSPFAPNGFKEILTGATVVFFAY-VGFDAV 228 (528)
Q Consensus 159 ~~ln~~g~~~~~~~~~i~~~~~i~~l~~~~i~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~f-~G~e~~ 228 (528)
......|+|..+|+......+..+.++++.+-++...+ ..+|+.+. +..-+..+...++|+. .|+-..
T Consensus 192 ~~~i~kGi~~~~kv~~~~~~~p~v~l~il~ir~ltl~ga~~Gl~~~~~pd~~~l~--~~~vW~~A~~Q~ffsl~ig~G~~ 269 (523)
T PF00209_consen 192 FFGIWKGIESIGKVMYPTLLLPFVLLIILLIRSLTLPGASEGLKFLFTPDWSKLL--DPKVWIAALGQVFFSLSIGFGIM 269 (523)
T ss_dssp TTTTTTTHHHHHHHHHHHHH---HHHHHHHHHHHT-EEHHHHHHHHHSB-TTGTT--SHHHHHHHHHHHHHHTTTTSSHH
T ss_pred HHheEeccccccchhhhhhhhhhEEEEEEEEEEEcCCCCCCceEEEecCCcchhh--HHHHHHHHHHHHhhccCCCcceE
Confidence 33345788888888776665444444444443322100 11233222 2234566777778877 577777
Q ss_pred hhhhhhhcCCCCchhHHHHHHHHHHHHHHHH
Q 009714 229 ANSAEESKKPQRDLPIGILGSLLICAALYVG 259 (528)
Q Consensus 229 ~~~a~E~k~p~k~ip~ai~~s~~~~~i~y~l 259 (528)
..++.-.|+ ++|++|............-++
T Consensus 270 it~~Sy~~~-~~n~~~~a~~v~~~~~~~sll 299 (523)
T PF00209_consen 270 ITYGSYNKF-KNNIFRDALIVAFINTLVSLL 299 (523)
T ss_dssp HHHHTTS-T-TS-SHHHHHHHHHHHHHHHHT
T ss_pred EEEcCcCCC-CccccccceEEEcCchhhhHh
Confidence 777776665 577888665555555444433
No 117
>PTZ00206 amino acid transporter; Provisional
Probab=57.36 E-value=1.9e+02 Score=30.43 Aligned_cols=56 Identities=4% Similarity=-0.133 Sum_probs=44.3
Q ss_pred cHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCCCCchhhh
Q 009714 277 APLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFA 332 (528)
Q Consensus 277 ~p~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~~~ 332 (528)
..+.++.+...+++...++.+..++..++++.+++......+...-++...|+++.
T Consensus 121 ~sY~~la~~~~G~~g~~~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~~~~~ 176 (467)
T PTZ00206 121 RTYEGVARVLLGPWGSYYVAATRAFHGFSACVAYVISVGDILSATLKGTNAPDFLK 176 (467)
T ss_pred CCHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhh
Confidence 35777888877889999999999999999999999888888776655444555554
No 118
>PRK10580 proY putative proline-specific permease; Provisional
Probab=48.23 E-value=2.7e+02 Score=29.11 Aligned_cols=66 Identities=12% Similarity=-0.051 Sum_probs=36.9
Q ss_pred HHHhhcCCCCCCCCCC-C-ccchhHHHHHHHHHHHHhcCCHH-----HHHHHHHHHHHHHHHHHhhcccccCCC
Q 009714 447 MLCLRHGYSDPPGFSC-P-GVPLLPAVSIFFNLFLFAQLHYE-----AWWRFVILSFISIGLYAFYGQYHADPS 513 (528)
Q Consensus 447 ~~~~~~~~~~~~~~~~-p-~~p~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~g~~~y~~~~~~~~~~~ 513 (528)
.++.||+.+++ .+|. | ..|.-|....+..++.....-.. ......+..+.-++.+..|..++++++
T Consensus 379 ~~~lr~~~~~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~y~~~~~~~~ 451 (457)
T PRK10580 379 QIAFRRRLPPE-EVKALKFKVPGGVATTIGGLIFLVFIIGLIGYHPDTRISLYVGFAWIVLLLIGWMFKRRHDR 451 (457)
T ss_pred HHHHHHHHHhc-CCCCCCcccCCccHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 44555554433 3332 3 35667888777777665543333 112335555666777778888765443
No 119
>PHA02898 virion envelope protein; Provisional
Probab=44.39 E-value=96 Score=24.04 Aligned_cols=21 Identities=14% Similarity=0.336 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHhhccccc
Q 009714 490 RFVILSFISIGLYAFYGQYHA 510 (528)
Q Consensus 490 ~~~~~~~~g~~~y~~~~~~~~ 510 (528)
+.++++.+|+++|-.|+++=+
T Consensus 53 Ilgivl~lG~~ifs~y~r~C~ 73 (92)
T PHA02898 53 ILAIILILGIIFFKGYNMFCG 73 (92)
T ss_pred HHHHHHHHHHHHHHHHhhhcC
Confidence 456678899999998885544
No 120
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=43.08 E-value=3.6e+02 Score=28.01 Aligned_cols=28 Identities=18% Similarity=0.199 Sum_probs=18.9
Q ss_pred HHHHHHHHHHhHHHHHHHhhcCCCCchh
Q 009714 303 LTTTLLVGLYVQSRLYLGLGRDGLLPSI 330 (528)
Q Consensus 303 ~~~~~~~~~~~~sR~l~a~a~dg~lP~~ 330 (528)
..++.....++.|+.+..+=-|+.=||.
T Consensus 68 ~i~s~f~i~YG~sKf~~G~~sDr~npr~ 95 (448)
T COG2271 68 ILGSAFSITYGVSKFVMGVLSDRSNPRY 95 (448)
T ss_pred HHHHHHHHHHHHHHHHhhhhcccCCCce
Confidence 3444556678889988887777665533
No 121
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=42.70 E-value=4.3e+02 Score=27.89 Aligned_cols=213 Identities=17% Similarity=0.110 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHHHHh-hcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 009714 105 ASIARSLASYVVSILE-LFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTVVKVII 183 (528)
Q Consensus 105 a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ln~~g~~~~~~~~~i~~~~~i~~ 183 (528)
..++...++.++.++. +++. ....|+++..+ +.+....+..+++-++....-.++.....++...-.++....
T Consensus 149 g~~awiGgecV~lmL~si~~~-~~hipntl~~~-----~~tt~e~i~FfIFwv~s~~~~~~~p~~ir~lf~~ka~~t~fA 222 (572)
T KOG2466|consen 149 GVNAWIGGECVQLMLKSIFKS-FSHIPNTLGKP-----GTTTYEFIGFFIFWVASLPFYWFPPYKIRHLFTWKAVLTPFA 222 (572)
T ss_pred hhhhhhhhhhHHHHHHHHhhh-hhcCccccCCC-----CCchHHHHHHHHHHHHhhheeeccHHHhhhHHHHHHhhhHHH
Confidence 4555666666555543 2222 33556555422 233333444445555555555567777777766666666555
Q ss_pred HHHHHhhhcccccc--c-CCCCCCCCChHHHHHHHHHHHHhhhhhHHHhhhhhh----hcCCCCchhHHHHHHHHHHHHH
Q 009714 184 VIVVIFAGAFEVDV--S-NWSPFAPNGFKEILTGATVVFFAYVGFDAVANSAEE----SKKPQRDLPIGILGSLLICAAL 256 (528)
Q Consensus 184 l~~~~i~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E----~k~p~k~ip~ai~~s~~~~~i~ 256 (528)
...+.+...-+.+. + +..+-.+.+....+.-+......+.+|.....-+.| .|+|. +.+..-+.++-+..
T Consensus 223 ~~g~LIw~l~kAhG~G~l~~~~st~~gs~~aWa~~~~i~~~~~~fstl~~N~pDFsRF~ksp~-a~~~~Ql~alp~~~-- 299 (572)
T KOG2466|consen 223 AFGFLIWLLKKAHGLGHLFDSKSTVSGSAHAWAFVRSIMSCIANFSTLIVNAPDFSRFAKSPN-AIWWGQLIALPLPF-- 299 (572)
T ss_pred HHHHHHHHHHhcCCccccccCCCcccccchhHHHHHHHHHHHhccchhhccCchhHhhcCCCC-ccchhhhhhhhhhh--
Confidence 55555554443222 1 111222333333344444556667777666555554 45552 22222222222111
Q ss_pred HHHHHHHHHhccc--cccC-CC--CcHHHHHHHHc-------ChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcC
Q 009714 257 YVGVSLVLTGMVP--YKFL-DE--DAPLSDAFASR-------GLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRD 324 (528)
Q Consensus 257 y~l~~~~~~~~~~--~~~~-~~--~~p~~~~~~~~-------~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~a~a~d 324 (528)
-+.-.+..... .+.+ +. .+|+ |++.+. +.+....++.+...++..++..+.- -+-.++.-.
T Consensus 300 --~l~~liGVlv~sa~~~iYG~~~W~Pl-dil~~~l~~~y~~G~RAgvFfi~~~f~laql~~NISan----~vaagnDl~ 372 (572)
T KOG2466|consen 300 --GLTPLIGVLVTSASKIIYGTNYWSPL-DILNQWLDTNYSAGARAGVFFIGFGFALAQLGTNISAN----SVAAGNDLS 372 (572)
T ss_pred --hhhhheeeEehhhhhhhhcccccCHH-HHHHHHhccccccccchhhhHHHHHHHHHHHhcchhcc----ccccchhhH
Confidence 11111111111 1111 11 2444 233322 4556777777777777776654331 112223334
Q ss_pred CCCchhhhh
Q 009714 325 GLLPSIFAK 333 (528)
Q Consensus 325 g~lP~~~~~ 333 (528)
+++||.+.-
T Consensus 373 ~L~PkyinI 381 (572)
T KOG2466|consen 373 ALLPKYINI 381 (572)
T ss_pred hhCcceEEe
Confidence 678887654
No 122
>PHA03048 IMV membrane protein; Provisional
Probab=41.29 E-value=1.1e+02 Score=23.85 Aligned_cols=33 Identities=21% Similarity=0.390 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHhhcccccCCC--CCccchhhh
Q 009714 490 RFVILSFISIGLYAFYGQYHADPS--SDTIVYHRV 522 (528)
Q Consensus 490 ~~~~~~~~g~~~y~~~~~~~~~~~--~~~~~~~~~ 522 (528)
+.++++.+|+++|-.|+++-+..+ .|+.+++..
T Consensus 52 Ilgivl~lG~~ifsmy~r~C~~~~~~~~~~Rynss 86 (93)
T PHA03048 52 VLGIVMTIGMLIYSMWGRYCTPSKVVIDNGRYNSS 86 (93)
T ss_pred HHHHHHHHHHHHHHHHhcccCCCcccCccceecCC
Confidence 456678899999998886655332 444444443
No 123
>PRK10746 putative transport protein YifK; Provisional
Probab=39.95 E-value=4e+02 Score=27.96 Aligned_cols=69 Identities=14% Similarity=0.149 Sum_probs=36.7
Q ss_pred HHHHhhcCCCCCCCCCCCc-cchhHHHHHHHHHHHHhcCCHHHH-----HHHHHHHHHHHHHHHhhcccccCCCCC
Q 009714 446 AMLCLRHGYSDPPGFSCPG-VPLLPAVSIFFNLFLFAQLHYEAW-----WRFVILSFISIGLYAFYGQYHADPSSD 515 (528)
Q Consensus 446 ~~~~~~~~~~~~~~~~~p~-~p~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~g~~~y~~~~~~~~~~~~~ 515 (528)
..++.||+.+++++ +.|. .|..|....+..++....+-...+ .....-...-.+.+..|..++..++++
T Consensus 381 ~~i~~r~~~~~~~~-~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~ 455 (461)
T PRK10746 381 SQLRFRRAHKAAIA-SHPFRSILFPWANYLTMAFLICVLIGMYFNEDTRMSLFVGIIFLLAVTLIYKVFGLNRHGK 455 (461)
T ss_pred HHHHHHHhcccccc-CCCCcCCCccHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 35567777654333 3443 678899887776666555444322 222222233334444666666555554
No 124
>PRK00968 tetrahydromethanopterin S-methyltransferase subunit D; Provisional
Probab=38.77 E-value=40 Score=30.79 Aligned_cols=32 Identities=16% Similarity=0.277 Sum_probs=24.6
Q ss_pred hhhhcCCC-CchhHHHHHHHHHHHHHHHHHHHH
Q 009714 232 AEESKKPQ-RDLPIGILGSLLICAALYVGVSLV 263 (528)
Q Consensus 232 a~E~k~p~-k~ip~ai~~s~~~~~i~y~l~~~~ 263 (528)
-|-.+||| |+.||+++.+.+...++-++....
T Consensus 204 IEGfHDPKFKr~p~~vias~vaS~~~gii~v~~ 236 (240)
T PRK00968 204 IEGFHDPKFKRWPRAVIASFVASLVCGIVAVLM 236 (240)
T ss_pred eecCCCcccccchHHHHHHHHHHHHHHHHHHHH
Confidence 46678998 999999999988877766555443
No 125
>TIGR00909 2A0306 amino acid transporter.
Probab=38.12 E-value=4.6e+02 Score=26.91 Aligned_cols=26 Identities=15% Similarity=0.278 Sum_probs=16.6
Q ss_pred CCCCCCCCccchhHHHHHHHHHHHHh
Q 009714 456 DPPGFSCPGVPLLPAVSIFFNLFLFA 481 (528)
Q Consensus 456 ~~~~~~~p~~p~~~~~~~~~~~~~~~ 481 (528)
+|+.-|....|..|.++.+...+...
T Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (429)
T TIGR00909 377 RPDIQRAFRCPLVPVLPVLVVSYCIY 402 (429)
T ss_pred cCCCCCCCCCCcchHHHHHHHHHHHH
Confidence 36665555578888877665555544
No 126
>PHA03049 IMV membrane protein; Provisional
Probab=33.37 E-value=1.1e+02 Score=22.38 Aligned_cols=21 Identities=14% Similarity=0.398 Sum_probs=14.9
Q ss_pred HHHHHHHHHHhhcccccCCCC
Q 009714 494 LSFISIGLYAFYGQYHADPSS 514 (528)
Q Consensus 494 ~~~~g~~~y~~~~~~~~~~~~ 514 (528)
+.++|+++|.+|.+++..+..
T Consensus 12 VaIi~lIvYgiYnkk~~~q~~ 32 (68)
T PHA03049 12 VVIIGLIVYGIYNKKTTTSQN 32 (68)
T ss_pred HHHHHHHHHHHHhcccccCCC
Confidence 467888899888777654443
No 127
>PRK10836 lysine transporter; Provisional
Probab=33.33 E-value=6e+02 Score=26.80 Aligned_cols=41 Identities=17% Similarity=0.160 Sum_probs=24.6
Q ss_pred HHHHhhcCC--CCCCCCCCCc-cchhHHHHHHHHHHHHhcCCHH
Q 009714 446 AMLCLRHGY--SDPPGFSCPG-VPLLPAVSIFFNLFLFAQLHYE 486 (528)
Q Consensus 446 ~~~~~~~~~--~~~~~~~~p~-~p~~~~~~~~~~~~~~~~~~~~ 486 (528)
..++.||+. ++++.-|.|. .|.-|....+..+.....+-..
T Consensus 392 a~l~~R~~~~~~~~~~~~~p~~~p~~p~~~~~~~~~~~~~~~~~ 435 (489)
T PRK10836 392 SHYRFRRGYVLQGHDLNDLPYRSGFFPLGPIFAFVLCLIITLGQ 435 (489)
T ss_pred HHHHHHHHHHhcCCCcCCCCCcCCCccHHHHHHHHHHHHHHHHH
Confidence 344555543 3333334454 7889999888877776654444
No 128
>PF03595 SLAC1: Voltage-dependent anion channel; InterPro: IPR004695 Two members of the Tellurite-Resistance/Dicarboxylate Transporter (TDT) family have been functionally characterised. One is the TehA protein of Escherichia coli which has been implicated in resistance to tellurite; the other is the Mae1 protein of Schizosaccharomyces pombe which functions in the uptake of malate and other dicarboxylates by a proton symport mechanism. These proteins exhibit 10 putative transmembrane a-helical spanners (TMSs).; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3M76_A 3M7C_A 3M7E_A 3M74_A 3M7B_A 3M71_A 3M72_A 3M77_A 3M7L_A 3M75_A ....
Probab=32.83 E-value=4.9e+02 Score=25.64 Aligned_cols=13 Identities=31% Similarity=0.565 Sum_probs=6.2
Q ss_pred hhHHHHHHHHHHH
Q 009714 467 LLPAVSIFFNLFL 479 (528)
Q Consensus 467 ~~~~~~~~~~~~~ 479 (528)
.+|.++.......
T Consensus 141 ~lp~Vg~~v~~~~ 153 (330)
T PF03595_consen 141 FLPPVGIMVSAVA 153 (330)
T ss_dssp HHHHTHHHHHHHH
T ss_pred eecchhHHHHHHH
Confidence 4555554444433
No 129
>COG3872 Predicted metal-dependent enzyme [General function prediction only]
Probab=32.03 E-value=3.3e+02 Score=26.00 Aligned_cols=33 Identities=12% Similarity=0.216 Sum_probs=21.9
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 009714 238 PQRDLPIGILGSLLICAALYVGVSLVLTGMVPY 270 (528)
Q Consensus 238 p~k~ip~ai~~s~~~~~i~y~l~~~~~~~~~~~ 270 (528)
-+|.-.+++..++...+++-++....+...+|.
T Consensus 97 ~EK~~~~a~~l~la~igvlsf~f~~~vF~lvPv 129 (318)
T COG3872 97 SEKKSKLAMILGLAVIGVLSFVFGKFVFTLVPV 129 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHhheehHH
Confidence 356678888888887777665555555445543
No 130
>PHA02902 putative IMV membrane protein; Provisional
Probab=31.86 E-value=81 Score=22.77 Aligned_cols=22 Identities=32% Similarity=0.564 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHhhcccccCC
Q 009714 491 FVILSFISIGLYAFYGQYHADP 512 (528)
Q Consensus 491 ~~~~~~~g~~~y~~~~~~~~~~ 512 (528)
...++++-+++|..|++.+..+
T Consensus 10 ~v~v~Ivclliya~YrR~kci~ 31 (70)
T PHA02902 10 AVIVIIFCLLIYAAYKRYKCIP 31 (70)
T ss_pred HHHHHHHHHHHHHHHHHhcCCC
Confidence 3445667778888888775444
No 131
>PRK15028 cytochrome bd-II oxidase subunit 2; Provisional
Probab=31.79 E-value=1.6e+02 Score=30.02 Aligned_cols=20 Identities=10% Similarity=0.039 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 009714 368 LSVGTLTGYSVVSACVIALR 387 (528)
Q Consensus 368 ~~~~~l~~y~~~~~~~~~~r 387 (528)
.++..+..|.+-..+.+.+|
T Consensus 172 ~Gl~~v~l~~l~Ga~~L~~K 191 (378)
T PRK15028 172 CGLLSLGMVILQGGVWLQLK 191 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555554444
No 132
>PF11998 DUF3493: Protein of unknown function (DUF3493); InterPro: IPR021883 This family of proteins is functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 79 to 331 amino acids in length.
Probab=31.60 E-value=2.3e+02 Score=21.45 Aligned_cols=41 Identities=20% Similarity=0.079 Sum_probs=31.7
Q ss_pred HHhhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhc
Q 009714 227 AVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGM 267 (528)
Q Consensus 227 ~~~~~a~E~k~p~k~ip~ai~~s~~~~~i~y~l~~~~~~~~ 267 (528)
.-..+=+|+|.|=|.+.+....+....+.+-.++...=...
T Consensus 5 ~~~rLraE~~aPfR~lR~f~y~a~~aSa~iG~~i~~~rl~a 45 (75)
T PF11998_consen 5 QYARLRAEAQAPFRGLRRFFYGAFGASAGIGLFIFLFRLIA 45 (75)
T ss_pred HHHHHHHHHHCchHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34556789999999999999999988888776666654433
No 133
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=31.27 E-value=42 Score=28.06 Aligned_cols=18 Identities=17% Similarity=0.235 Sum_probs=6.2
Q ss_pred HHHHHHHHHhhcccccCCC
Q 009714 495 SFISIGLYAFYGQYHADPS 513 (528)
Q Consensus 495 ~~~g~~~y~~~~~~~~~~~ 513 (528)
.++.++.|++ +|+++|.+
T Consensus 79 g~Illi~y~i-rR~~Kk~~ 96 (122)
T PF01102_consen 79 GIILLISYCI-RRLRKKSS 96 (122)
T ss_dssp HHHHHHHHHH-HHHS----
T ss_pred HHHHHHHHHH-HHHhccCC
Confidence 3344545554 33334433
No 134
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=31.11 E-value=75 Score=30.60 Aligned_cols=9 Identities=33% Similarity=0.172 Sum_probs=3.6
Q ss_pred HHHhhcCCC
Q 009714 447 MLCLRHGYS 455 (528)
Q Consensus 447 ~~~~~~~~~ 455 (528)
|+.+||+..
T Consensus 281 WlyrrRK~s 289 (295)
T TIGR01478 281 WLYRRRKKS 289 (295)
T ss_pred HHHHhhccc
Confidence 333444443
No 135
>PF07760 DUF1616: Protein of unknown function (DUF1616); InterPro: IPR011674 This is a group of sequences from hypothetical archaeal proteins. The region in question is approximately 330 amino acid residues long.
Probab=30.55 E-value=5.2e+02 Score=25.18 Aligned_cols=35 Identities=23% Similarity=0.251 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCcc
Q 009714 431 YILLIVAVVIAVLASAMLCLRHGYSDPPGFSCPGV 465 (528)
Q Consensus 431 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~ 465 (528)
.....+..+..+.....+.+|++.+++++|..+.-
T Consensus 88 ~i~~~l~~~t~~~~~~a~~rr~~~~~~~r~~~~~~ 122 (287)
T PF07760_consen 88 PILISLSIFTLVLSIIAYIRRRRLPEEERFSVPFD 122 (287)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCccccccccch
Confidence 33333444444444445555555566666666553
No 136
>COG4060 MtrD Tetrahydromethanopterin S-methyltransferase, subunit D [Coenzyme metabolism]
Probab=29.93 E-value=66 Score=28.32 Aligned_cols=32 Identities=22% Similarity=0.341 Sum_probs=24.0
Q ss_pred hhhhcCCC-CchhHHHHHHHHHHHHHHHHHHHH
Q 009714 232 AEESKKPQ-RDLPIGILGSLLICAALYVGVSLV 263 (528)
Q Consensus 232 a~E~k~p~-k~ip~ai~~s~~~~~i~y~l~~~~ 263 (528)
-|..+||| |+.||+++.+.+...+.-++..+.
T Consensus 194 IEGfHDPKfkk~pk~vias~vasil~~iia~l~ 226 (230)
T COG4060 194 IEGFHDPKFKKLPKAVIASLVASILAGIIAVLL 226 (230)
T ss_pred eecccChhhhccchHHHHHHHHHHHHHHHHHHH
Confidence 45678997 999999999888777665554443
No 137
>PF13687 DUF4153: Domain of unknown function (DUF4153)
Probab=29.74 E-value=4.5e+02 Score=24.27 Aligned_cols=14 Identities=21% Similarity=0.232 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHH
Q 009714 490 RFVILSFISIGLYA 503 (528)
Q Consensus 490 ~~~~~~~~g~~~y~ 503 (528)
...++..+..+.|.
T Consensus 162 ~~~~~~~~~~l~~~ 175 (217)
T PF13687_consen 162 LLAIFLLIYALYYI 175 (217)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444444
No 138
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=29.69 E-value=5.3e+02 Score=24.99 Aligned_cols=43 Identities=7% Similarity=0.006 Sum_probs=24.2
Q ss_pred CccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhh
Q 009714 463 PGVPLLPAVSIFFNLFLFAQLHYEAWWRFVILSFISIGLYAFY 505 (528)
Q Consensus 463 p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~ 505 (528)
+.....|+++.+.....+.+.....-+..+..++.+...+..+
T Consensus 240 ~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~ 282 (293)
T PRK10532 240 TLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLT 282 (293)
T ss_pred HHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhc
Confidence 3445678888888887766543332234444445555554433
No 139
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=29.17 E-value=6.5e+02 Score=25.93 Aligned_cols=15 Identities=20% Similarity=0.264 Sum_probs=10.7
Q ss_pred CCCCCCCccchhHHH
Q 009714 457 PPGFSCPGVPLLPAV 471 (528)
Q Consensus 457 ~~~~~~p~~p~~~~~ 471 (528)
++++|+|+....-.+
T Consensus 365 ~~~y~v~gg~~~~~~ 379 (403)
T PRK15132 365 QAGYRVKGGRPALAL 379 (403)
T ss_pred CCCccCCCChHHHHH
Confidence 568999997765443
No 140
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=28.77 E-value=79 Score=24.47 Aligned_cols=29 Identities=10% Similarity=0.178 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCCCCCc
Q 009714 436 VAVVIAVLASAMLCLRHGYSDPPGFSCPG 464 (528)
Q Consensus 436 ~~~~i~~~~~~~~~~~~~~~~~~~~~~p~ 464 (528)
.++++.++..|+.+..++++..||--.|.
T Consensus 41 ~~iFil~VilwfvCC~kRkrsRrPIYrPv 69 (94)
T PF05393_consen 41 CGIFILLVILWFVCCKKRKRSRRPIYRPV 69 (94)
T ss_pred HHHHHHHHHHHHHHHHHhhhccCCccccc
Confidence 33445666777777666666556554454
No 141
>PF12263 DUF3611: Protein of unknown function (DUF3611); InterPro: IPR022051 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 180 and 205 amino acids in length. There are two completely conserved residues (W and G) that may be functionally important.
Probab=28.73 E-value=4.4e+02 Score=23.82 Aligned_cols=18 Identities=17% Similarity=0.309 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 009714 170 SVLNSCMTVVKVIIVIVV 187 (528)
Q Consensus 170 ~~~~~i~~~~~i~~l~~~ 187 (528)
-|+|.+++++..+.+++-
T Consensus 22 FW~QlvLgvVs~~iL~F~ 39 (183)
T PF12263_consen 22 FWIQLVLGVVSAVILLFA 39 (183)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345666666655544443
No 142
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=28.72 E-value=3.6e+02 Score=27.00 Aligned_cols=21 Identities=14% Similarity=0.067 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHhhcccc
Q 009714 489 WRFVILSFISIGLYAFYGQYH 509 (528)
Q Consensus 489 ~~~~~~~~~g~~~y~~~~~~~ 509 (528)
......+++|+++|..-..+.
T Consensus 290 ~~af~lIiiG~vvy~~~~~~~ 310 (334)
T PF06027_consen 290 ILAFALIIIGFVVYNLAESPE 310 (334)
T ss_pred HHHHHHHHHHhheEEccCCcc
Confidence 344455678888877444333
No 143
>TIGR00947 2A73 probable bicarbonate transporter, IctB family. This family of proteins is suggested to transport inorganic carbon (HCO3-), based on the phenotype of a mutant of IctB in Synechococcus sp. strain PCC 7942. Bicarbonate uptake is used by many photosynthetic organisms including cyanobacteria. These organisms are able to concentrate CO2/HCO3- against a greater than ten-fold concentration gradient. Cyanobacteria may have several such carriers operating with different efficiencies. Note that homology to various O-antigen ligases, with possible implications for mutant cell envelope structure, might allow alternatives to the interpretation of IctB as a bicarbonate transport protein.
Probab=28.09 E-value=6.9e+02 Score=25.88 Aligned_cols=43 Identities=26% Similarity=0.129 Sum_probs=18.4
Q ss_pred ccchHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHH
Q 009714 339 HTPVHSQVWVGIVAGILAGLFNVRVLSHILSVGTLTGYSVVSA 381 (528)
Q Consensus 339 ~~P~~a~l~~~~i~~~~~~~~~~~~l~~~~~~~~l~~y~~~~~ 381 (528)
-+|....++.......+....+.+.-.+..+......|.....
T Consensus 65 ~~~~~~~~llf~~~~~ls~~~S~~~~~a~~~l~~~~~yl~~f~ 107 (425)
T TIGR00947 65 LTPIHLLVLLYWGIAALATGLSPVPAAALKGLLKLTLYLLVFA 107 (425)
T ss_pred CCchHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHH
Confidence 3454444443333333444444433334444444445554443
No 144
>PHA02681 ORF089 virion membrane protein; Provisional
Probab=27.94 E-value=1.2e+02 Score=23.21 Aligned_cols=23 Identities=13% Similarity=0.265 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHhhcccc
Q 009714 487 AWWRFVILSFISIGLYAFYGQYH 509 (528)
Q Consensus 487 ~~~~~~~~~~~g~~~y~~~~~~~ 509 (528)
++.....+.++.+++|..|++..
T Consensus 6 a~~~~V~V~IVclliya~YRR~~ 28 (92)
T PHA02681 6 ALLTVIVISIVCYIVIMMYRRSC 28 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 33445556677777887776663
No 145
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=26.74 E-value=1e+02 Score=26.52 Aligned_cols=51 Identities=20% Similarity=0.189 Sum_probs=29.6
Q ss_pred cchhHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHhh--cccccCCCCC
Q 009714 465 VPLLPAVSIFFNLFLFAQL-HYEAWWRFVILSFISIGLYAFY--GQYHADPSSD 515 (528)
Q Consensus 465 ~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~y~~~--~~~~~~~~~~ 515 (528)
++..|+++++....+...+ ..+.+.++.+.+..++.++... .+|..+++++
T Consensus 81 vYi~PL~~l~v~~~La~~L~~~e~~~~~~~~lg~~l~fl~~r~ysRkl~~~~~~ 134 (150)
T COG3086 81 VYIFPLVGLFLGAILAQYLFFSELIVIFGAFLGLALGFLLARRYSRKLAKRTEW 134 (150)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Confidence 4678888888887774332 4445566666565665555543 3444444443
No 146
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=25.61 E-value=3.2e+02 Score=21.21 Aligned_cols=21 Identities=5% Similarity=0.221 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHhhccccc
Q 009714 490 RFVILSFISIGLYAFYGQYHA 510 (528)
Q Consensus 490 ~~~~~~~~g~~~y~~~~~~~~ 510 (528)
+.++++.+|+++|-.|+++..
T Consensus 54 IlG~vl~lGilifs~y~~C~~ 74 (91)
T PHA02680 54 IVGAVLLLGLFVFSMYRKCSG 74 (91)
T ss_pred HHHHHHHHHHHHHHHhcccCC
Confidence 456668899999998886654
No 147
>TIGR00816 tdt C4-dicarboxylate transporter/malic acid transport protein. spanners (TMSs).
Probab=25.39 E-value=6.6e+02 Score=24.74 Aligned_cols=11 Identities=9% Similarity=-0.079 Sum_probs=4.7
Q ss_pred CCCCccchhHH
Q 009714 460 FSCPGVPLLPA 470 (528)
Q Consensus 460 ~~~p~~p~~~~ 470 (528)
......|..+.
T Consensus 131 ~paw~lp~V~~ 141 (320)
T TIGR00816 131 HPGWYLPPVAL 141 (320)
T ss_pred CchhhhcccHH
Confidence 33334454443
No 148
>TIGR00930 2a30 K-Cl cotransporter.
Probab=25.03 E-value=1.1e+03 Score=27.40 Aligned_cols=58 Identities=9% Similarity=-0.067 Sum_probs=32.3
Q ss_pred CCCCCCCCccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH-HHHHhhcccccCCCCCcc
Q 009714 456 DPPGFSCPGVPLLPAVSIFFNLFLFAQLHYEAWWRFVILSFISI-GLYAFYGQYHADPSSDTI 517 (528)
Q Consensus 456 ~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~y~~~~~~~~~~~~~~~ 517 (528)
+++.||-..-++.+.++++..+..+.. .+...-...++.+ +...+|.+.+.++...+.
T Consensus 487 ~~p~~RP~fk~~~~~~sllG~l~c~~l----mf~i~w~~ali~~~i~~~ly~~~~~~~~~~~w 545 (953)
T TIGR00930 487 RSPGWRPRFKYYHWWLSLLGASLCCAI----MFLISWWAALVAMVIALFLYKYVTYKKPDVNW 545 (953)
T ss_pred cCCCCCCccccchHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhhccCCCCCc
Confidence 356677555666788887777766433 1122222223333 333567888777777643
No 149
>PF14007 YtpI: YtpI-like protein
Probab=24.90 E-value=82 Score=24.72 Aligned_cols=29 Identities=7% Similarity=-0.276 Sum_probs=20.5
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHhhcccccC
Q 009714 482 QLHYEAWWRFVILSFISIGLYAFYGQYHAD 511 (528)
Q Consensus 482 ~~~~~~~~~~~~~~~~g~~~y~~~~~~~~~ 511 (528)
..++.+++..++.+++|+.-.+ .+.|+.+
T Consensus 54 ~~st~~~iV~~ifl~lG~~n~~-~G~r~y~ 82 (89)
T PF14007_consen 54 FGSTVRLIVGAIFLVLGLFNLF-AGIRAYR 82 (89)
T ss_pred cccHHHHHHHHHHHHHhHHHHH-HHHHHHH
Confidence 4477788888888888887655 5555543
No 150
>PF11174 DUF2970: Protein of unknown function (DUF2970); InterPro: IPR021344 This short family is conserved in Proteobacteria. The function is not known.
Probab=24.78 E-value=1.7e+02 Score=20.75 Aligned_cols=26 Identities=15% Similarity=0.299 Sum_probs=19.3
Q ss_pred HHHHHHHHhhhhhHHHhhhhhhhcCC
Q 009714 213 TGATVVFFAYVGFDAVANSAEESKKP 238 (528)
Q Consensus 213 ~~~~~~~~~f~G~e~~~~~a~E~k~p 238 (528)
..+-...|+|.|...-.+.-+|.++.
T Consensus 3 ~~~~sVl~af~GVqs~~~~e~Df~~~ 28 (56)
T PF11174_consen 3 QVVKSVLWAFFGVQSSKNRERDFAQG 28 (56)
T ss_pred HHHHHHHHHHhCcCcchhHHHHHHcC
Confidence 34556789999998888887777643
No 151
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=24.73 E-value=41 Score=32.96 Aligned_cols=31 Identities=13% Similarity=0.258 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHhhcccccCCCCCccch
Q 009714 489 WRFVILSFISIGLYAFYGQYHADPSSDTIVY 519 (528)
Q Consensus 489 ~~~~~~~~~g~~~y~~~~~~~~~~~~~~~~~ 519 (528)
+..++.+++-+++|+++++||+++..++.-|
T Consensus 263 iaIliIVLIMvIIYLILRYRRKKKmkKKlQY 293 (299)
T PF02009_consen 263 IAILIIVLIMVIIYLILRYRRKKKMKKKLQY 293 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 3445556677788888888887766554433
No 152
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=24.51 E-value=1.8e+02 Score=21.35 Aligned_cols=19 Identities=21% Similarity=0.501 Sum_probs=13.8
Q ss_pred HHHHHHHHHHhhcccccCC
Q 009714 494 LSFISIGLYAFYGQYHADP 512 (528)
Q Consensus 494 ~~~~g~~~y~~~~~~~~~~ 512 (528)
+.++|+++|..|.+++..+
T Consensus 12 Vaii~lIlY~iYnr~~~~q 30 (68)
T PF05961_consen 12 VAIIGLILYGIYNRKKTTQ 30 (68)
T ss_pred HHHHHHHHHHHHhcccccC
Confidence 4678888888887766543
No 153
>PF03169 OPT: OPT oligopeptide transporter protein; InterPro: IPR004813 The transporter OPT family are transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. OPT1 is not a member of the ABC or PTR membrane transport families [].; GO: 0055085 transmembrane transport
Probab=24.47 E-value=9.6e+02 Score=26.30 Aligned_cols=55 Identities=9% Similarity=0.058 Sum_probs=36.3
Q ss_pred HHHHHHHHHhhhhhHHHhhhhhhhcCCC--CchhHHHHHHHHHHHHHHHHHHHHHHh
Q 009714 212 LTGATVVFFAYVGFDAVANSAEESKKPQ--RDLPIGILGSLLICAALYVGVSLVLTG 266 (528)
Q Consensus 212 ~~~~~~~~~~f~G~e~~~~~a~E~k~p~--k~ip~ai~~s~~~~~i~y~l~~~~~~~ 266 (528)
...+....+.+...+.+..+..|.|--. |.-||.+..+-++..++-.+++.....
T Consensus 434 ~a~l~~~~~~~~~~~qa~~~~~DlK~G~~l~~~Pr~~f~~Q~iG~~ig~~v~~~v~~ 490 (624)
T PF03169_consen 434 IANLLFGGYGYAAASQAGDLMQDLKTGHYLGIPPRAQFYAQIIGTIIGAFVAVAVMR 490 (624)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556777888888889999988542 555666666666666665555555443
No 154
>PRK10764 potassium-tellurite ethidium and proflavin transporter; Provisional
Probab=23.92 E-value=7.2e+02 Score=24.64 Aligned_cols=6 Identities=17% Similarity=0.097 Sum_probs=3.2
Q ss_pred cccchH
Q 009714 338 RHTPVH 343 (528)
Q Consensus 338 ~~~P~~ 343 (528)
.+.|..
T Consensus 7 ~~~p~~ 12 (324)
T PRK10764 7 LPLPAG 12 (324)
T ss_pred CCCCHH
Confidence 455654
No 155
>PF09991 DUF2232: Predicted membrane protein (DUF2232); InterPro: IPR018710 This family of bacterial and eukaryotic proteins has no known fucntion; however this signature belongs to a Pfam Gx transporter clan.
Probab=23.58 E-value=6.5e+02 Score=24.02 Aligned_cols=93 Identities=13% Similarity=0.049 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHhhcCCCCchhhhhhcCCcccchHHHHHHHHHHHHHHHhhC-HH----HHHHH-H
Q 009714 295 ISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLFN-VR----VLSHI-L 368 (528)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~~~~~n~r~~~P~~a~l~~~~i~~~~~~~~~-~~----~l~~~-~ 368 (528)
+-....+............+.|.+....++ .+.+.+.+ +.+.|.+.++...+. .+.....+ .+ ..... .
T Consensus 161 ~P~~~~i~~~~~~~~~~~l~~~il~r~~~~---~~~~~~~~-~~~lP~~~~~~~i~~-~~~~l~~~~~~~~~~~~i~~Nl 235 (290)
T PF09991_consen 161 FPALLIISALLMSLINYYLARRILRRLGIP---IPPLPPFR-EWRLPRWLIWLLIVA-LALSLVGGGFGGSWLQIIGLNL 235 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCC---CCCCCchH-HHhCcHHHHHHHHHH-HHHHHHhcccchHHHHHHHHHH
Confidence 333333333333333444455555333333 23333334 678898876554433 33333322 21 11211 2
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCC
Q 009714 369 SVGTLTGYSVVSACVIALRWKDRT 392 (528)
Q Consensus 369 ~~~~l~~y~~~~~~~~~~r~~~~~ 392 (528)
.......|.+-.++++....++++
T Consensus 236 ~~v~~~l~~~qGla~~~~~~~~~~ 259 (290)
T PF09991_consen 236 LIVLSFLFFIQGLAVIHFFLKRRK 259 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcC
Confidence 222235666666666665544443
No 156
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=23.49 E-value=1.1e+02 Score=25.71 Aligned_cols=16 Identities=6% Similarity=-0.303 Sum_probs=6.8
Q ss_pred HHHHHHhhcCCCCCCC
Q 009714 444 ASAMLCLRHGYSDPPG 459 (528)
Q Consensus 444 ~~~~~~~~~~~~~~~~ 459 (528)
+.++...||++++.++
T Consensus 18 ~~~~~~rRR~r~G~~P 33 (130)
T PF12273_consen 18 LFYCHNRRRRRRGLQP 33 (130)
T ss_pred HHHHHHHHHhhcCCCC
Confidence 3334444444444333
No 157
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=23.31 E-value=7.2e+02 Score=25.98 Aligned_cols=28 Identities=7% Similarity=-0.101 Sum_probs=12.4
Q ss_pred CCCCCCCcccccccchhhHHHHHHHHHh
Q 009714 390 DRTSRNDSSRLTSAWRQGVICLIIIACC 417 (528)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 417 (528)
+++.+++++.+..++...+..+..+..+
T Consensus 398 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 425 (478)
T TIGR00913 398 RSLDELPYKSQTGPYGSYYALFFNILIL 425 (478)
T ss_pred CCcccCCccCCCcchHHHHHHHHHHHHH
Confidence 4455555554444444444333333333
No 158
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=23.16 E-value=30 Score=22.84 Aligned_cols=10 Identities=20% Similarity=0.823 Sum_probs=5.0
Q ss_pred HHHHHHHHHH
Q 009714 494 LSFISIGLYA 503 (528)
Q Consensus 494 ~~~~g~~~y~ 503 (528)
..-+|+.+|-
T Consensus 18 f~~iGl~IyQ 27 (49)
T PF11044_consen 18 FAWIGLSIYQ 27 (49)
T ss_pred HHHHHHHHHH
Confidence 3335555554
No 159
>PF07213 DAP10: DAP10 membrane protein; InterPro: IPR009861 This family consists of several mammalian DAP10 membrane proteins. In activated mouse natural killer (NK) cells, the NKG2D receptor associates with two intracellular adaptors, DAP10 and DAP12, which trigger phosphatidyl inositol 3 kinase (PI3K) and Syk family protein tyrosine kinases, respectively. It has been suggested that the DAP10-PI3K pathway is sufficient to initiate NKG2D-mediated killing of target cells [].
Probab=21.54 E-value=3.8e+02 Score=20.51 Aligned_cols=32 Identities=19% Similarity=0.207 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHhhcccccCCCCCccchhhh
Q 009714 491 FVILSFISIGLYAFYGQYHADPSSDTIVYHRV 522 (528)
Q Consensus 491 ~~~~~~~g~~~y~~~~~~~~~~~~~~~~~~~~ 522 (528)
....++|....|..-+.|+++..+|+++|-..
T Consensus 44 ~vlTLLIv~~vy~car~r~r~~~~~~kvYiNm 75 (79)
T PF07213_consen 44 AVLTLLIVLVVYYCARPRRRPTQEDDKVYINM 75 (79)
T ss_pred HHHHHHHHHHHHhhcccccCCcccCCEEEEeC
Confidence 33344455555554555555444556665443
No 160
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=21.39 E-value=9.4e+02 Score=25.09 Aligned_cols=54 Identities=22% Similarity=0.290 Sum_probs=35.8
Q ss_pred ChHHHHHHHHHHHHhhhhhHHHhhhhhhhcCCCCchhHHHHHHHHHHHHHHHHH
Q 009714 207 GFKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGV 260 (528)
Q Consensus 207 ~~~~~~~~~~~~~~~f~G~e~~~~~a~E~k~p~k~ip~ai~~s~~~~~i~y~l~ 260 (528)
++...+......+..+.+....+.-.++-||..|.+..++.....+-.+.....
T Consensus 196 ~~~~~~~~~~~~f~G~e~~~~~a~e~k~~k~ip~ai~~~~~~v~~lY~l~~~~~ 249 (468)
T TIGR03810 196 QVKNMMLVTVWVFIGIEGASMLSARAEKRSDVGKATVIGLIGVLAIYVLVSVLS 249 (468)
T ss_pred HHHHHHHHHHHHHHhHhHHhhhHhhccCcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 343445556666677777666666677789988888888877666655544443
No 161
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=20.75 E-value=9.7e+02 Score=24.96 Aligned_cols=17 Identities=12% Similarity=0.288 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHhh
Q 009714 489 WRFVILSFISIGLYAFY 505 (528)
Q Consensus 489 ~~~~~~~~~g~~~y~~~ 505 (528)
....+..++|.++|...
T Consensus 472 ~~l~~~~~~g~~vY~~~ 488 (502)
T TIGR01695 472 LGLLAIGLIGLLVYFLG 488 (502)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444456667777644
No 162
>PF04238 DUF420: Protein of unknown function (DUF420); InterPro: IPR007352 This is a predicted membrane protein with four transmembrane helices.
Probab=20.64 E-value=5.3e+02 Score=21.91 Aligned_cols=17 Identities=6% Similarity=-0.119 Sum_probs=7.8
Q ss_pred HHHHHHHhhhhcCCCCC
Q 009714 378 VVSACVIALRWKDRTSR 394 (528)
Q Consensus 378 ~~~~~~~~~r~~~~~~~ 394 (528)
+...+....|+++.+.+
T Consensus 18 ll~~g~~~Ir~~~~~~H 34 (133)
T PF04238_consen 18 LLLIGWYFIRRGRIKLH 34 (133)
T ss_pred HHHHHHHHHHhCCHHHH
Confidence 33344444455554543
No 163
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=20.60 E-value=1.8e+02 Score=20.06 Aligned_cols=10 Identities=30% Similarity=0.391 Sum_probs=5.4
Q ss_pred hhcccccCCC
Q 009714 504 FYGQYHADPS 513 (528)
Q Consensus 504 ~~~~~~~~~~ 513 (528)
.|++|+...+
T Consensus 26 ~ygYkht~d~ 35 (50)
T PF12606_consen 26 AYGYKHTVDP 35 (50)
T ss_pred ccccccccCC
Confidence 3566665544
Done!