Query 009714
Match_columns 528
No_of_seqs 210 out of 2700
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 11:23:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009714.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009714hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1l_A Arginine/agmatine antip 100.0 5.8E-49 2E-53 410.7 37.5 388 38-513 36-435 (445)
2 3gia_A Uncharacterized protein 100.0 1.4E-47 4.7E-52 400.2 35.8 351 20-392 17-371 (444)
3 4djk_A Probable glutamate/gamm 100.0 1.6E-43 5.6E-48 376.0 36.5 343 37-398 35-404 (511)
4 2jln_A MHP1; hydantoin, transp 98.7 6.6E-05 2.2E-09 78.4 34.9 252 43-321 60-329 (501)
5 2xq2_A Sodium/glucose cotransp 98.0 0.017 5.7E-07 61.5 33.5 236 56-318 96-377 (593)
6 3dh4_A Sodium/glucose cotransp 97.7 0.049 1.7E-06 57.0 30.8 44 274-318 305-348 (530)
7 2a65_A Leutaa, Na(+):neurotran 95.2 3.3 0.00011 42.7 29.4 104 150-256 171-289 (519)
8 4ain_A Glycine betaine transpo 84.0 41 0.0014 34.5 24.7 44 207-252 321-364 (539)
9 2wsw_A BCCT family betaine/car 70.3 98 0.0034 31.5 32.2 158 205-373 314-486 (509)
10 2i68_A Protein EMRE; transmemb 57.9 9.4 0.00032 31.5 4.0 37 466-502 65-101 (137)
11 2ks1_B Epidermal growth factor 34.8 49 0.0017 21.2 3.7 12 444-455 30-41 (44)
12 2l2t_A Receptor tyrosine-prote 34.2 50 0.0017 21.2 3.6 13 444-456 29-41 (44)
13 2jwa_A Receptor tyrosine-prote 20.9 1.1E+02 0.0037 19.6 3.3 9 447-455 33-41 (44)
No 1
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=100.00 E-value=5.8e-49 Score=410.70 Aligned_cols=388 Identities=20% Similarity=0.302 Sum_probs=331.8
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCchhhhhHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009714 38 TPVQVRVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVS 117 (528)
Q Consensus 38 ~~~G~~~~l~~~l~~l~~~~~a~~~ael~~~~P~~~Gg~y~~~~~~~g~~~gf~~gw~~~l~~~~~~a~~~~~~~~~~~~ 117 (528)
..+||.++++|+++++++++.+++|+|+++++|+ +||.|+|++|.+||.+|+..+|.+++++....+..+...++++..
T Consensus 36 ~~~G~~~~~~~li~~~~~~~~a~~~~el~~~~p~-~Gg~y~~~~~~~G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 114 (445)
T 3l1l_A 36 ASTGGIAIYGWLVTIIGALGLSMVYAKMSFLDPS-PGGSYAYARRCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSY 114 (445)
T ss_dssp HHHCTHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-TTTHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHccCCC-CCCchhhHHhHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3478889999999999999999999999999999 999999999999999999999999999988888888888777654
Q ss_pred HHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Q 009714 118 ILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDV 197 (528)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ln~~g~~~~~~~~~i~~~~~i~~l~~~~i~~~~~~~~ 197 (528)
++ |.. ..+....+++++++++.+.+|++|+|..++++.+.+.++++.++++++.++.+.+.
T Consensus 115 ~~---~~~----------------~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~ 175 (445)
T 3l1l_A 115 FF---PIL----------------KDPWVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIPIVGIAVFGWFWFRG 175 (445)
T ss_dssp TC---GGG----------------GSHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCCC
T ss_pred HC---ccc----------------cccHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh
Confidence 32 111 11234456888889999999999999999999999999999999888888877666
Q ss_pred cCCC-CCCCCC---hHHHHHHHHHHHHhhhhhHHHhhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhccccccC
Q 009714 198 SNWS-PFAPNG---FKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFL 273 (528)
Q Consensus 198 ~~~~-~~~~~~---~~~~~~~~~~~~~~f~G~e~~~~~a~E~k~p~k~ip~ai~~s~~~~~i~y~l~~~~~~~~~~~~~~ 273 (528)
+++. ++.+.+ +.++..++...+|+|.|+|.+++++||+|||+|++||++..+..++.++|++..+......|++++
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~r~ip~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 255 (445)
T 3l1l_A 176 ETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVCYVLSTTAIMGMIPNAAL 255 (445)
T ss_dssp CCCCCC-----------HHHHHHHHHHTTTTTTHHHHGGGGBSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTS
T ss_pred hhcccccCccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 5543 333333 557889999999999999999999999999999999999999999999999999999999998876
Q ss_pred -CCCcHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCCCCchhhhhhcCCcccchHHHHHHHHHH
Q 009714 274 -DEDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVA 352 (528)
Q Consensus 274 -~~~~p~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~~~~~n~r~~~P~~a~l~~~~i~ 352 (528)
++++|+.++++...+++...++.+..+++.+++.++.+++.+|.+++|||||.+|++|+|+| |+++|+++++++.+++
T Consensus 256 ~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~a~dg~lP~~~~~~~-~~~~P~~a~~~~~~~~ 334 (445)
T 3l1l_A 256 RVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPPIFARVN-KAGTPVAGLIIVGILM 334 (445)
T ss_dssp CSTTCTHHHHHHHHHCTTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTSSCGGGGCCC-TTCCCHHHHHHHHHHH
T ss_pred hccCcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHhcC-CCCCCHHHHHHHHHHH
Confidence 45689999999998888889999999999999999999999999999999999999999999 6799999999999887
Q ss_pred HHHHHhh-------CHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCcccccccchhhHHHHHHHHHhhhhcchhh
Q 009714 353 GILAGLF-------NVRVLSHILSVGTLTGYSVVSACVIALRWKDRTSRNDSSRLTSAWRQGVICLIIIACCGFGAGLFY 425 (528)
Q Consensus 353 ~~~~~~~-------~~~~l~~~~~~~~l~~y~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 425 (528)
.++.+.. .++.+.++.++..++.|.+.+++.+++|+|+| +
T Consensus 335 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~r~~~~-~-------------------------------- 381 (445)
T 3l1l_A 335 TIFQLSSISPNATKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHF-G-------------------------------- 381 (445)
T ss_dssp HHHHHSTTSHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHSSSS-G--------------------------------
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc-c--------------------------------
Confidence 7766542 35788999999999999999999999987765 2
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhh
Q 009714 426 RINASYILLIVAVVIAVLASAMLCLRHGYSDPPGFSCPGVPLLPAVSIFFNLFLFAQLHYEAWWRFVILSFISIGLYAFY 505 (528)
Q Consensus 426 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~ 505 (528)
+ |.|..++++.++.+.+++.+...++.++....+++++|+.+|..+
T Consensus 382 -------------------------------~---r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~ 427 (445)
T 3l1l_A 382 -------------------------------K---ARPAYLAVTTIAFLYCIWAVVGSGAKEVMWSFVTLMVITAMYALN 427 (445)
T ss_dssp -------------------------------G---GCTTTHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------------------------------c---ccchhHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence 1 224557889999999999988889999999999999999999977
Q ss_pred cccccCCC
Q 009714 506 GQYHADPS 513 (528)
Q Consensus 506 ~~~~~~~~ 513 (528)
++|++++.
T Consensus 428 ~~~~~~~~ 435 (445)
T 3l1l_A 428 YNRLHKNP 435 (445)
T ss_dssp HSTTCCCS
T ss_pred hhhcccCc
Confidence 66655443
No 2
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=100.00 E-value=1.4e-47 Score=400.18 Aligned_cols=351 Identities=22% Similarity=0.321 Sum_probs=305.5
Q ss_pred ccccccccccccCcccccCCCChHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCchhhhhHHHhchh-HHHHHHHHHHH
Q 009714 20 SARLLAPEYSLSPVPWLATPVQVRVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNEL-TAFLVFAQLML 98 (528)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~G~~~~l~~~l~~l~~~~~a~~~ael~~~~P~~~Gg~y~~~~~~~g~~-~gf~~gw~~~l 98 (528)
..+.+-+...+...+...+.+||+++++|+++++++++.+++|+|+++++|+ +||.|+|++|.+||. .+...+|.+|+
T Consensus 17 ~~g~~iG~gi~~~~~~~~~~~G~~~~~~~li~~~~~~~~~~~~~el~~~~P~-~Gg~y~~~~~~~G~~~~~g~~~~~~~~ 95 (444)
T 3gia_A 17 AVGVMIGASIFSIFGVGAKIAGRNLPETFILSGIYALLVAYSYTKLGAKIVS-NAGPIAFIHKAIGDNIITGALSILLWM 95 (444)
T ss_dssp HHHHHHHHHTTTSHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHTTCCC-TTTHHHHHHHHHCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhhCCC-CCcHHHhHHHHhCcchHHHHHHHHHHH
Confidence 3344333333444455667789999999999999999999999999999999 999999999999986 34456899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 009714 99 DYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTV 178 (528)
Q Consensus 99 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ln~~g~~~~~~~~~i~~~ 178 (528)
+|....+..+..+++++..+++. .. ++....+++.+++++.+.+|++|+|..++++.+.+.
T Consensus 96 ~~~~~~a~~~~~~~~~~~~~~~~------~~-------------~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~ 156 (444)
T 3gia_A 96 SYVISIALFAKGFAGYFLPLINA------PI-------------NTFNIAITEIGIVAFFTALNFFGSKAVGRAEFFIVL 156 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTC------CC-------------CHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC------CC-------------chHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 99999999999999998876431 00 122334678888999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcccccccCCCC-CCCCChHHHHHHHHHHHHhhhhhHHHhhhhhhhcCCCCchhHHHHHHHHHHHHHH
Q 009714 179 VKVIIVIVVIFAGAFEVDVSNWSP-FAPNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALY 257 (528)
Q Consensus 179 ~~i~~l~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~k~p~k~ip~ai~~s~~~~~i~y 257 (528)
++++.++++++.++.+.+++|+++ +.|+++.+++.++...+|+|.|+|.+++++||+|||+|++||++..+..++.++|
T Consensus 157 ~~i~~~~~~ii~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~G~e~~~~~~~e~k~P~r~ip~ai~~~~~~~~~~y 236 (444)
T 3gia_A 157 VKLLILGLFIFAGLITIHPSYVIPDLAPSAVSGMIFASAIFFLSYMGFGVITNASEHIENPKKNVPRAIFISILIVMFVY 236 (444)
T ss_dssp HHHHHHHHHHHHHHHHCCGGGTSCCCSHHHHHHHHHHHHHGGGGGTHHHHHHTTGGGBSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcChhhcCCCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHccCcccchhHHHHHHHHHHHHHH
Confidence 999999999888888777777765 4456777889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccccccCC--CCcHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCCCCchhhhhhc
Q 009714 258 VGVSLVLTGMVPYKFLD--EDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVH 335 (528)
Q Consensus 258 ~l~~~~~~~~~~~~~~~--~~~p~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~~~~~n 335 (528)
++..+......|++++. ++.|+.++++...+++...++.+..+++.+++.++.+++.||++++|||||.+||+|+|+|
T Consensus 237 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~f~~~~ 316 (444)
T 3gia_A 237 VGVAISAIGNLPIDELIKASENALAVAAKPFLGNLGFLLISIGALFSISSAMNATIYGGANVAYSLAKDGELPEFFERKV 316 (444)
T ss_dssp HHHHHHHHTTSCHHHHHHTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHSSCCSSCCTTS
T ss_pred HHHHHHHHhCCCHHHHhcccchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHhCCC
Confidence 99999999998887763 4578888888888888888999999999999999999999999999999999999999998
Q ss_pred CCcccchHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCC
Q 009714 336 PKRHTPVHSQVWVGIVAGILAGLFNVRVLSHILSVGTLTGYSVVSACVIALRWKDRT 392 (528)
Q Consensus 336 ~r~~~P~~a~l~~~~i~~~~~~~~~~~~l~~~~~~~~l~~y~~~~~~~~~~r~~~~~ 392 (528)
| +.|++++++..+++.++.+..+++.+.++.+.+.++.|.+.+++.+++|+++|+
T Consensus 317 -~-~~P~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 371 (444)
T 3gia_A 317 -W-FKSTEGLYITSALGVLFALLFNMEGVASITSAVFMVIYLFVILSHYILIDEVGG 371 (444)
T ss_dssp -C-CSCTHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCC
T ss_pred -C-CCCcHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 4 459999999999999888888999999999999999999999999999887654
No 3
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=100.00 E-value=1.6e-43 Score=375.99 Aligned_cols=343 Identities=20% Similarity=0.237 Sum_probs=268.3
Q ss_pred cCCCChHHHHHHHHHHHHH-HHHHHHHHHHhc--cCCCCCCchhhhhHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009714 37 ATPVQVRVTISFLLAGAAS-VLNALCYAELAS--RFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLAS 113 (528)
Q Consensus 37 ~~~~G~~~~l~~~l~~l~~-~~~a~~~ael~~--~~P~~~Gg~y~~~~~~~g~~~gf~~gw~~~l~~~~~~a~~~~~~~~ 113 (528)
...+|+..++.+++++++. ++.+++|+|+++ ++| +||.|+|++|.+||.+||.++|.+|+++....+......+.
T Consensus 35 ~~~~G~~~~~~~~i~~~~~~l~~al~~ael~s~~~~P--~GG~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~ 112 (511)
T 4djk_A 35 FATSGFSLVFFLLLGGILWFIPVGLCAAEMATVDGWE--EGGVFAWVSNTLGPRWGFAAISFGYLQIAIGFIPMLYFVLG 112 (511)
T ss_dssp HHTTTTHHHHHHHHHHHHTHHHHHHHHHHHHTTSCC-----CHHHHHHHHHCHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCC--CCChhhhHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3568898888888888876 569999999999 999 69999999999999999999999999999988888887777
Q ss_pred HHHHHHhhcccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH-HHHHHHhhhc
Q 009714 114 YVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTVVKVI-IVIVVIFAGA 192 (528)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ln~~g~~~~~~~~~i~~~~~i~-~l~~~~i~~~ 192 (528)
++..++. .|... .++....+++++++++.+.+|++|+|..++++++.+.++++ .++++++.++
T Consensus 113 ~~~~~~~-~p~~~---------------~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 176 (511)
T 4djk_A 113 ALSYILK-WPALN---------------EDPITKTIAALIILWALALTQFGGTKYTARIAKVGFFAGILLPAFILIALAA 176 (511)
T ss_dssp HHHTTTT-CGGGT---------------SCSSHHHHHHHHHHHHHHHHHHTCSSSHHHHTHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHhc-Ccccc---------------cCcHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7754321 11111 11233456888889999999999999999999999887644 3555555554
Q ss_pred ccc---cc----cCCCCCCCCC-hHHHHHHHHHHHHhhhhhHHHhhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 009714 193 FEV---DV----SNWSPFAPNG-FKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVL 264 (528)
Q Consensus 193 ~~~---~~----~~~~~~~~~~-~~~~~~~~~~~~~~f~G~e~~~~~a~E~k~p~k~ip~ai~~s~~~~~i~y~l~~~~~ 264 (528)
... +. .++.++.|+. ..+.+.++...+|+|.|+|.+++++||+|||+|++||++..++.++.++|++..++.
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~G~e~~~~~a~E~k~P~k~ip~ai~~~~~~~~~~y~~~~~~~ 256 (511)
T 4djk_A 177 IYLHSGAPVAIEMDSKTFFPDFSKVGTLVVFVAFILSYMGVEASATHVNEMSNPGRDYPLAMLLLMVAAICLSSVGGLSI 256 (511)
T ss_dssp HHTC------------CCCCCTTSTTTTTTHHHHHHHHTTGGGGTGGGSSSSCCTTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCcccccCcccccCCCcccchHHHHHHHHHHHHhhHHHHHHHHHhccCcccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 321 11 1233333431 123445567789999999999999999999999999999999999999999999999
Q ss_pred HhccccccCCCCcHHHHHH----HHcC--hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCCCCchhhhhhcCCc
Q 009714 265 TGMVPYKFLDEDAPLSDAF----ASRG--LKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKR 338 (528)
Q Consensus 265 ~~~~~~~~~~~~~p~~~~~----~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~~~~~n~r~ 338 (528)
....|+++...+++..+.+ +..+ .++...++.+..+++.+++.++.+++.||++++|||||.+|++|+|+| |+
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~ardg~lP~~~~~~~-~~ 335 (511)
T 4djk_A 257 AMVIPGNEINLSAGVMQTFTVLMSHVAPEIEWTVRVISALLLLGVLAEIASWIVGPSRGMYVTAQKNLLPAAFAKMN-KN 335 (511)
T ss_dssp HTTSCTTSCCSSSTHHHHHHHHHSSSCSSCTTHHHHHHHHHHHHHHHHHHHHTTHHHHHTCHHHHGGGCSSSCCCCC-SS
T ss_pred HeecCHhhccccchHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcccHHHHhcC-CC
Confidence 9999988876655444433 3445 577888999999999999999999999999999999999999999999 67
Q ss_pred ccchHHHHHHHHHHHH-HHHhhC--------HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCcc
Q 009714 339 HTPVHSQVWVGIVAGI-LAGLFN--------VRVLSHILSVGTLTGYSVVSACVIALRWKDRTSRNDSS 398 (528)
Q Consensus 339 ~~P~~a~l~~~~i~~~-~~~~~~--------~~~l~~~~~~~~l~~y~~~~~~~~~~r~~~~~~~~~~~ 398 (528)
++|+++++++..+..+ +..+.+ ++.+.++.+...++.|.+++++.+++|+|+++.+++.+
T Consensus 336 ~~P~~ai~~~~~~~~l~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~y~~~~~~~~~~r~~~~~~~~~~~ 404 (511)
T 4djk_A 336 GVPVTLVISQLVITSIALIILTNTGGGNNMSFLIALALTVVIYLCAYFMLFIGYIVLVLKHPDLKRTFN 404 (511)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCCCSCC
T ss_pred CCcHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCee
Confidence 9999999988544333 333334 57888888999999999999999999998877654443
No 4
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=98.70 E-value=6.6e-05 Score=78.35 Aligned_cols=252 Identities=11% Similarity=-0.020 Sum_probs=136.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCchhhhhHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 009714 43 RVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELF 122 (528)
Q Consensus 43 ~~~l~~~l~~l~~~~~a~~~ael~~~~P~~~Gg~y~~~~~~~g~~~gf~~gw~~~l~~~~~~a~~~~~~~~~~~~~~~~~ 122 (528)
.++++.+++.++........+.++.+.-. ......+..||++.+.+......+..+...+.+....++.+...++..
T Consensus 60 ~a~lai~lG~li~~~~~~l~~~~G~~~Gl---~~~v~~R~~FG~~Gs~i~~ll~~i~~igw~~v~~~~gg~al~~~~~~~ 136 (501)
T 2jln_A 60 QVIVAIAAGCTIAVILLFFTQSAAIRWGI---NFTVAARMPFGIRGSLIPITLKALLSLFWFGFQTWLGALALDEITRLL 136 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHCC---CHHHHTTTTSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHhhcCC---ChhhhhHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45556666665555555555555555432 355578888999888888777777766666777776676666654311
Q ss_pred ccccCCCCccccCCCccccccchhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccccc--cCC
Q 009714 123 PFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDV--SNW 200 (528)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ln~~g~~~~~~~~~i~~~~~i~~l~~~~i~~~~~~~~--~~~ 200 (528)
++. .+.+ +..+++.++...+...|.|...+++++...+.++..+.+.+..+.+.+. ++.
T Consensus 137 --~g~-~~~~----------------v~~~i~~~l~~~~~~~G~~~i~~~~~~~~p~~~i~~i~~~~~~l~~~g~~~~~~ 197 (501)
T 2jln_A 137 --TGF-TNLP----------------LWIVIFGAIQVVTTFYGITFIRWMNVFASPVLLAMGVYMVYLMLDGADVSLGEV 197 (501)
T ss_dssp --HCC-CCHH----------------HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHH
T ss_pred --cCc-chHH----------------HHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhh
Confidence 000 0111 2334455667777889999999999998888777666655544433221 111
Q ss_pred CCCCC-CChHHHHHHHHH-HHHhhhhhHHHhhhhhhhcCCCCc-----------hhHHHHHHHHHHHHHHHHHHHHHHhc
Q 009714 201 SPFAP-NGFKEILTGATV-VFFAYVGFDAVANSAEESKKPQRD-----------LPIGILGSLLICAALYVGVSLVLTGM 267 (528)
Q Consensus 201 ~~~~~-~~~~~~~~~~~~-~~~~f~G~e~~~~~a~E~k~p~k~-----------ip~ai~~s~~~~~i~y~l~~~~~~~~ 267 (528)
....+ ....+++.++.. ..+...+.-..+.++.+.|++++. .-++...+..+...+..+........
T Consensus 198 ~~~~~~~~~~~f~~ai~~~~~~~~~~~~~~~DysRy~~~~~~~~~~~~~~~~~~~~~g~~lG~~i~~~~~~~lG~~~~~~ 277 (501)
T 2jln_A 198 MSMGGENPGMPFSTAIMIFVGGWIAVVVSIHDIVKECKVDPNASREGQTKADARYATAQWLGMVPASIIFGFIGAASMVL 277 (501)
T ss_dssp TTCCCSSCCSCHHHHHHHHHTTTHHHHTTTHHHHTTBCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCCccchHHHHHHHHHHHHHHHHHHhccCcccccCCCCccccccchhhccchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11111 112234444433 233334445567788888887541 33333333333333322222222111
Q ss_pred cccccCCCCcHHHHHHHHcChhHH-HHHHH-HHHHHHHHHHHHH-HHHhHHHHHHHh
Q 009714 268 VPYKFLDEDAPLSDAFASRGLKYV-SVLIS-FGAVAGLTTTLLV-GLYVQSRLYLGL 321 (528)
Q Consensus 268 ~~~~~~~~~~p~~~~~~~~~~~~~-~~i~~-~~~~~~~~~~~~~-~~~~~sR~l~a~ 321 (528)
....+|.....+...++.. ..+.. +..+++..++... ..++.+--+..+
T Consensus 278 -----~~~~dp~~~l~~~l~~~~~~~~~~~~~~~~la~i~tn~~~n~ys~~~~l~~~ 329 (501)
T 2jln_A 278 -----VGEWNPVIAITEVVGGVSIPMAILFQVFVLLATWSTNPAANLLSPAYTLCST 329 (501)
T ss_dssp -----HSCSCHHHHHHHHHTCCCHHHHHHHHHHHHHHHHTTHHHHHTHHHHHHHHHH
T ss_pred -----ccccCHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHh
Confidence 1334565544443333332 55555 6666666666553 567776666554
No 5
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=98.00 E-value=0.017 Score=61.45 Aligned_cols=236 Identities=12% Similarity=0.081 Sum_probs=112.7
Q ss_pred HHHHHHHHHHhccCCCCCCchhhhhHHHhchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhcccccCCCCcccc
Q 009714 56 VLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYH-IGAASIARSLASYVVSILELFPFFKENIPSWIG 134 (528)
Q Consensus 56 ~~~a~~~ael~~~~P~~~Gg~y~~~~~~~g~~~gf~~gw~~~l~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (528)
...+..+...-.+. + .=..++|.++-||+....+......+.+. ...+....+.+..++.+++. +.+.
T Consensus 96 ~~~~~~~~p~~~r~-~-~~T~~e~l~~Rfg~~~~~~~ai~~l~~~~~~~~~~~l~~~~~~l~~~~Gi--------~~~~- 164 (593)
T 2xq2_A 96 IIVGKYFLPIFIEK-G-IYTIPEFVEKRFNKKLKTILAVFWISLYIFVNLTSVLYLGGLALETILGI--------PLMY- 164 (593)
T ss_dssp HHHHHTHHHHHHHT-T-CCSHHHHHHHHTCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCC--------CHHH-
T ss_pred HHHHHHHHHHHHhC-C-CCCcHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc--------cHHH-
Confidence 33444455554444 2 56899999999998877666655443333 23444444455555555431 1111
Q ss_pred CCCccccccchhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhccc----------------cccc
Q 009714 135 HGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFE----------------VDVS 198 (528)
Q Consensus 135 ~~~~~~~~~~~~~~l~~~~~~~~~~~ln~~g~~~~~~~~~i~~~~~i~~l~~~~i~~~~~----------------~~~~ 198 (528)
. +.+...+.....-..|.|...+.+.+=.+++++..++..+.+..+ ..++
T Consensus 165 -----------~---i~i~~~i~~~Yt~~GGl~av~~TD~iQ~iiml~~~l~v~~~~l~~~gg~~~~~~~~~~~~~~~~~ 230 (593)
T 2xq2_A 165 -----------S---ILGLALFALVYSIYGGLSAVVWTDVIQVFFLVLGGFMTTYMAVSFIGGTDGWFAGVSKMVDAAPG 230 (593)
T ss_dssp -----------H---HHHHHHHHHHHHHTTC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHCGG
T ss_pred -----------H---HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHhhChh
Confidence 0 111122223333445677655544444444443333322221111 0122
Q ss_pred CCCCCCCC---------ChHHHHHHHHHHHHhhhhhH-HHhhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHH-HH-Hh
Q 009714 199 NWSPFAPN---------GFKEILTGATVVFFAYVGFD-AVANSAEESKKPQRDLPIGILGSLLICAALYVGVSL-VL-TG 266 (528)
Q Consensus 199 ~~~~~~~~---------~~~~~~~~~~~~~~~f~G~e-~~~~~a~E~k~p~k~ip~ai~~s~~~~~i~y~l~~~-~~-~~ 266 (528)
.++.+.+. ++..++.+.......+.|.+ ...+-.=+.||+ |+..|+...+.+...++..+... .+ ..
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~q~~~qR~laaks~-k~ar~~~~~~~~~~~~~~~~~~~~Gl~a~ 309 (593)
T 2xq2_A 231 HFEMILDQSNPQYMNLPGIAVLIGGLWVANLYYWGFNQYIIQRTLAAKSV-SEAQKGIVFAAFLALIVPFLVVLPGIAAY 309 (593)
T ss_dssp GSCSSCCSSSGGGGTSCTTHHHHSTHHHHHHHHHTTTCSHHHHHHTTSCH-HHHHHHHHHHHHHTTTHHHHHTHHHHHHH
T ss_pred hcccccCCCCcccccchHHHHHHHHHHHHHHHhhcCChHHHHHhheeCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22211111 12111111112223344544 244555577886 78888887776654444332211 11 11
Q ss_pred cc--c--------------cccC-CCCcHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 009714 267 MV--P--------------YKFL-DEDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLY 318 (528)
Q Consensus 267 ~~--~--------------~~~~-~~~~p~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l 318 (528)
.. + ..+. +.|..++... +..+++..-++..+.+.+..++..+.+.+.|-.+
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~p~l~-~~lp~~l~gl~~a~llaA~mST~~s~l~a~st~~ 377 (593)
T 2xq2_A 310 VITSDPQLMASLGDIAATNLPSAANADKAYPWLT-QFLPVGVKGVVFAALAAAIVSSLASMLNSTATIF 377 (593)
T ss_dssp HHHTCHHHHHHHC-----CCCCSTBGGGHHHHHH-HTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcccccccccccccccCCCCCChhhHHHHHH-HHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 0 1122 3355566666 6677888878878888888888877777766543
No 6
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=97.72 E-value=0.049 Score=56.97 Aligned_cols=44 Identities=11% Similarity=-0.000 Sum_probs=31.4
Q ss_pred CCCcHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 009714 274 DEDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLY 318 (528)
Q Consensus 274 ~~~~p~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l 318 (528)
+.|..+....+ ..+++..-++..+.+.+..++..+.+.+.|-.+
T Consensus 305 ~~d~~~p~l~~-~lp~~l~Gl~~a~llAA~mST~ss~l~s~st~~ 348 (530)
T 3dh4_A 305 NADKAYPWLTQ-FLPVGVKGVVFAALAAAIVSSLASMLNSTATIF 348 (530)
T ss_dssp SGGGHHHHHHT-TCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHH-HcchhHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 44566766665 666777777777888888888888777766544
No 7
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=95.23 E-value=3.3 Score=42.68 Aligned_cols=104 Identities=13% Similarity=0.185 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHhhhcccccc-------------cCCCCCCCCChHHHHHHH
Q 009714 150 LAPILLALLTIVLCWGV-GESSVLNSCMTVVKVIIVIVVIFAGAFEVDV-------------SNWSPFAPNGFKEILTGA 215 (528)
Q Consensus 150 ~~~~~~~~~~~ln~~g~-~~~~~~~~i~~~~~i~~l~~~~i~~~~~~~~-------------~~~~~~~~~~~~~~~~~~ 215 (528)
.-++..++...+..+|+ |..+|...++..+..+.++++.+-++.-.++ .+|+... +...+..+.
T Consensus 171 ~~~~~w~i~~~ii~~Gv~kgiek~~~~~mp~l~vlliiL~ir~ltLpGp~~~A~~Gl~~~~~Pd~s~L~--~~~vw~~A~ 248 (519)
T 2a65_A 171 VFLITMFINVSILIRGISKGIERFAKIAMPTLFILAVFLVIRVFLLETPNGTAADGLNFLWTPDFEKLK--DPGVWIAAV 248 (519)
T ss_dssp HHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHHHHHHHHHHTTCEETTEEHHHHHHHHHSCCTTSTT--CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCHHHhC--CHHHHHHHH
Confidence 33444555666777899 7799999999888777777776665543221 1122221 233567777
Q ss_pred HHHHHhh-hhhHHHhhhhhhhcCCCCchhHHHHHHHHHHHHH
Q 009714 216 TVVFFAY-VGFDAVANSAEESKKPQRDLPIGILGSLLICAAL 256 (528)
Q Consensus 216 ~~~~~~f-~G~e~~~~~a~E~k~p~k~ip~ai~~s~~~~~i~ 256 (528)
..++|+. .|+-....++.-.|+ +.|++|........-...
T Consensus 249 gQ~FFSLslG~G~~ity~SY~~~-~~n~~~~a~~v~~~n~~~ 289 (519)
T 2a65_A 249 GQIFFTLSLGFGAIITYASYVRK-DQDIVLSGLTAATLNEKA 289 (519)
T ss_dssp HHHHHHHTTTSSHHHHHHTTSCT-TSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHhHHhhhhcccCC-CcChHhhHHHHHHHHHHH
Confidence 7888888 577777777776665 577887665555544443
No 8
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A
Probab=83.96 E-value=41 Score=34.48 Aligned_cols=44 Identities=20% Similarity=0.013 Sum_probs=23.4
Q ss_pred ChHHHHHHHHHHHHhhhhhHHHhhhhhhhcCCCCchhHHHHHHHHH
Q 009714 207 GFKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLI 252 (528)
Q Consensus 207 ~~~~~~~~~~~~~~~f~G~e~~~~~a~E~k~p~k~ip~ai~~s~~~ 252 (528)
+|.+-+..+..+.|.--+-=....+|.=.|. |++..-+...+++
T Consensus 321 ~W~~~WTiFYWaWWiswaPfvG~FIARISrG--RTIREfv~gvl~v 364 (539)
T 4ain_A 321 EWLGSWTIFYWAWWISWSPFVGMFLARISRG--RSIREFILGVLLV 364 (539)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHTTTT--CBHHHHHHTTTHH
T ss_pred chhhcCHHHHHHHHHHHHHHHHHHhhhccCC--cCHHHHHHHHHHH
Confidence 4555555565555554443444555555553 8886555444433
No 9
>2wsw_A BCCT family betaine/carnitine/choline transporter; transport protein, SD methionine, membrane protein; HET: CM5 1PE; 2.29A {Proteus mirabilis} PDB: 2wsx_A* 3hfx_A*
Probab=70.28 E-value=98 Score=31.48 Aligned_cols=158 Identities=15% Similarity=0.054 Sum_probs=68.6
Q ss_pred CCChHHHHHHHHHHHHhhhhhHHHhhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhccccc-cCCC--------
Q 009714 205 PNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYK-FLDE-------- 275 (528)
Q Consensus 205 ~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~k~p~k~ip~ai~~s~~~~~i~y~l~~~~~~~~~~~~-~~~~-------- 275 (528)
+++|.+-+..+..+.|.--+-=.....|.=.|. |++..-+...++.-. +....-+.+.+...-+ +.+.
T Consensus 314 ~~~w~~~WTiFYWaWWisWaPfvG~FIARISrG--RTIREfi~gvl~vPs-~~~~~WfsvfGg~ai~~~~~g~~~l~~~~ 390 (509)
T 2wsw_A 314 KGGFPQAWTVFYWAWWVIYAIQMSIFLARISKG--RTVRELCLGMVSGLT-AGTWLIWTILGGNTLQLIDQNILNIPQLI 390 (509)
T ss_dssp CCCHHHHTHHHHHHHHHHTHHHHHHHHHHTTTT--CBHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTTSCCHHHHH
T ss_pred ccChhhccHHHHHHHHHHHHHHHHHHhheecCC--cCHHHHHHHHHHHHH-HHHHHhHHHHhHHHHHHHHhCCccHHHHH
Confidence 345666666666655554443444555555553 788555544443333 3333332222211100 1111
Q ss_pred -----CcHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCCCCchhhhhhcCC-cccchHHHHHHH
Q 009714 276 -----DAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPK-RHTPVHSQVWVG 349 (528)
Q Consensus 276 -----~~p~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~~~~~n~r-~~~P~~a~l~~~ 349 (528)
+..+.+.+++.... .++....++-...-..+..-+.+-.+-.++..|.-+ +.||. ...=.++ +..+
T Consensus 391 ~~~~~~~alf~~l~~lP~~---~i~~~l~iil~~~FfvTSaDS~s~vi~~~ss~g~~~----~~~p~~~~rifW~-v~~g 462 (509)
T 2wsw_A 391 DQYGVPRAIIETWAALPLS---TATMWGFFILCFIATVTLINACSYTLAMSTCRSMKE----GADPPLLVRIGWS-VLVG 462 (509)
T ss_dssp HHHCHHHHHHHHHHTSSSH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHBCCCCT----TCCCCHHHHHHHH-HHHH
T ss_pred hccChhhHHHHHHHHCChH---HHHHHHHHHHHHHHHHHcccHHHHHHHHHHcCCCCC----CCCCChhHHHHHH-HHHH
Confidence 11223344444332 222222222223333344455667777777655211 11211 1111233 3444
Q ss_pred HHHHHHHHhhCHHHHHHHHHHHHH
Q 009714 350 IVAGILAGLFNVRVLSHILSVGTL 373 (528)
Q Consensus 350 ~i~~~~~~~~~~~~l~~~~~~~~l 373 (528)
+++.++....+++.+.+...++.+
T Consensus 463 ~va~~LL~~ggl~aLQ~~~ii~al 486 (509)
T 2wsw_A 463 IIGIILLALGGLKPIQTAIIAGGC 486 (509)
T ss_dssp HHHHHHHHHCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHh
Confidence 555555555567777666555543
No 10
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=57.90 E-value=9.4 Score=31.53 Aligned_cols=37 Identities=8% Similarity=-0.121 Sum_probs=15.8
Q ss_pred chhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Q 009714 466 PLLPAVSIFFNLFLFAQLHYEAWWRFVILSFISIGLY 502 (528)
Q Consensus 466 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y 502 (528)
...|++..+...+.+...-...-+.....++.|+...
T Consensus 65 ~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll 101 (137)
T 2i68_A 65 GVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLII 101 (137)
T ss_dssp HHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 3456666555555544432222234444455555443
No 11
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=34.79 E-value=49 Score=21.22 Aligned_cols=12 Identities=8% Similarity=0.088 Sum_probs=5.2
Q ss_pred HHHHHHhhcCCC
Q 009714 444 ASAMLCLRHGYS 455 (528)
Q Consensus 444 ~~~~~~~~~~~~ 455 (528)
..+++.+||+.+
T Consensus 30 ~~~~~~RRr~~~ 41 (44)
T 2ks1_B 30 GIGLFMRRRHIV 41 (44)
T ss_dssp HHHHHHHTTTCC
T ss_pred HHHHHhhhhHhh
Confidence 334444444444
No 12
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=34.19 E-value=50 Score=21.15 Aligned_cols=13 Identities=15% Similarity=0.135 Sum_probs=5.6
Q ss_pred HHHHHHhhcCCCC
Q 009714 444 ASAMLCLRHGYSD 456 (528)
Q Consensus 444 ~~~~~~~~~~~~~ 456 (528)
..+++++||+.++
T Consensus 29 ~~~~~~RRRr~~~ 41 (44)
T 2l2t_A 29 TFAVYVRRKSIKK 41 (44)
T ss_dssp HHHHHHHTTCSSC
T ss_pred HHHHHhhhhhhhh
Confidence 3344444444443
No 13
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=20.93 E-value=1.1e+02 Score=19.62 Aligned_cols=9 Identities=22% Similarity=0.224 Sum_probs=3.7
Q ss_pred HHHhhcCCC
Q 009714 447 MLCLRHGYS 455 (528)
Q Consensus 447 ~~~~~~~~~ 455 (528)
++.+||+.+
T Consensus 33 ~~~RRR~~~ 41 (44)
T 2jwa_A 33 ILIKRRQQK 41 (44)
T ss_dssp HHHHHHCSC
T ss_pred hheehhhhh
Confidence 334444433
Done!