Query 009715
Match_columns 528
No_of_seqs 526 out of 3729
Neff 9.9
Searched_HMMs 46136
Date Thu Mar 28 16:28:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009715.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009715hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2394 WD40 protein DMR-N9 [G 100.0 8.9E-53 1.9E-57 400.6 34.8 475 1-496 3-634 (636)
2 KOG0271 Notchless-like WD40 re 100.0 2.7E-44 5.9E-49 329.5 24.9 328 103-522 109-472 (480)
3 KOG0272 U4/U6 small nuclear ri 100.0 1E-41 2.2E-46 316.6 20.7 271 165-491 184-458 (459)
4 KOG0271 Notchless-like WD40 re 100.0 6E-40 1.3E-44 301.0 21.2 295 86-491 134-479 (480)
5 KOG0286 G-protein beta subunit 100.0 9.4E-38 2E-42 277.6 28.7 273 166-491 65-343 (343)
6 KOG0291 WD40-repeat-containing 100.0 9.1E-37 2E-41 301.7 37.7 381 88-525 116-544 (893)
7 KOG0272 U4/U6 small nuclear ri 100.0 7.7E-39 1.7E-43 297.5 21.1 271 208-524 173-453 (459)
8 KOG0318 WD40 repeat stress pro 100.0 1.7E-33 3.7E-38 268.4 38.2 371 130-525 18-554 (603)
9 KOG0284 Polyadenylation factor 100.0 2.2E-36 4.9E-41 279.8 15.9 272 165-494 105-381 (464)
10 KOG0279 G protein beta subunit 100.0 6.5E-34 1.4E-38 251.7 28.4 277 208-523 13-305 (315)
11 KOG0279 G protein beta subunit 100.0 8.4E-34 1.8E-38 251.0 26.5 272 168-493 28-313 (315)
12 KOG0273 Beta-transducin family 100.0 4.5E-33 9.7E-38 262.4 29.1 315 169-525 192-517 (524)
13 KOG0263 Transcription initiati 100.0 4E-34 8.7E-39 285.8 22.5 255 147-494 375-650 (707)
14 KOG0291 WD40-repeat-containing 100.0 9.9E-32 2.1E-36 266.2 36.1 371 86-525 164-606 (893)
15 KOG0286 G-protein beta subunit 100.0 5.2E-32 1.1E-36 241.1 30.5 271 206-522 51-336 (343)
16 KOG0319 WD40-repeat-containing 100.0 1.6E-32 3.5E-37 271.5 26.8 357 86-525 124-613 (775)
17 KOG0319 WD40-repeat-containing 100.0 2.6E-32 5.6E-37 270.1 27.5 396 86-524 81-570 (775)
18 KOG0263 Transcription initiati 100.0 1.3E-32 2.9E-37 274.9 23.8 254 209-525 377-643 (707)
19 KOG0285 Pleiotropic regulator 100.0 5.8E-32 1.2E-36 246.6 23.4 275 207-528 148-438 (460)
20 KOG0318 WD40 repeat stress pro 100.0 2.4E-30 5.2E-35 247.0 35.4 424 26-493 32-602 (603)
21 KOG0273 Beta-transducin family 100.0 1.8E-31 3.8E-36 251.7 27.4 327 106-493 175-523 (524)
22 KOG0296 Angio-associated migra 100.0 1.7E-31 3.7E-36 244.5 26.4 326 101-493 56-398 (399)
23 KOG0295 WD40 repeat-containing 100.0 4.2E-32 9.2E-37 248.3 22.4 289 94-492 94-405 (406)
24 KOG0315 G-protein beta subunit 100.0 2.7E-31 5.9E-36 231.3 25.7 265 88-416 19-298 (311)
25 KOG0284 Polyadenylation factor 100.0 2.2E-33 4.9E-38 260.0 13.4 268 209-523 95-372 (464)
26 KOG0306 WD40-repeat-containing 100.0 1E-31 2.2E-36 266.0 25.4 294 103-495 367-666 (888)
27 KOG0315 G-protein beta subunit 100.0 1.6E-30 3.5E-35 226.6 28.8 276 133-506 11-303 (311)
28 KOG0266 WD40 repeat-containing 100.0 1.1E-30 2.3E-35 267.6 30.6 278 165-493 168-454 (456)
29 KOG0645 WD40 repeat protein [G 100.0 2.3E-30 5E-35 228.3 28.1 269 168-493 27-311 (312)
30 KOG0306 WD40-repeat-containing 100.0 3.3E-30 7.1E-35 255.3 32.2 392 86-525 84-616 (888)
31 KOG0285 Pleiotropic regulator 100.0 4E-31 8.6E-36 241.2 23.2 288 103-494 145-440 (460)
32 KOG0295 WD40 repeat-containing 100.0 3E-31 6.6E-36 242.7 20.5 275 208-522 106-397 (406)
33 KOG0276 Vesicle coat complex C 100.0 6.9E-31 1.5E-35 255.1 24.0 264 165-525 22-293 (794)
34 KOG0266 WD40 repeat-containing 100.0 4.8E-30 1E-34 262.9 30.3 269 209-521 158-442 (456)
35 KOG0265 U5 snRNP-specific prot 100.0 3.1E-30 6.7E-35 230.6 24.6 277 204-526 41-333 (338)
36 KOG0296 Angio-associated migra 100.0 1.5E-29 3.1E-34 231.9 28.9 304 165-524 73-391 (399)
37 cd00200 WD40 WD40 domain, foun 100.0 3.5E-29 7.5E-34 240.8 32.5 268 166-491 19-289 (289)
38 KOG0281 Beta-TrCP (transducin 100.0 9.4E-32 2E-36 244.3 13.4 258 209-522 196-468 (499)
39 KOG0277 Peroxisomal targeting 100.0 2.5E-30 5.3E-35 226.1 21.1 235 209-526 59-304 (311)
40 KOG0276 Vesicle coat complex C 100.0 3.3E-30 7.1E-35 250.4 24.2 250 103-414 7-265 (794)
41 cd00200 WD40 WD40 domain, foun 100.0 9.9E-29 2.1E-33 237.6 34.0 272 208-525 7-285 (289)
42 KOG0292 Vesicle coat complex C 100.0 4.9E-30 1.1E-34 257.8 23.8 263 165-524 18-315 (1202)
43 KOG0316 Conserved WD40 repeat- 100.0 1.4E-29 3E-34 219.0 22.6 266 208-522 15-291 (307)
44 KOG1539 WD repeat protein [Gen 100.0 1.3E-29 2.8E-34 254.0 25.0 373 86-522 179-638 (910)
45 KOG0277 Peroxisomal targeting 100.0 3.8E-30 8.3E-35 224.9 17.5 282 113-492 12-308 (311)
46 KOG0265 U5 snRNP-specific prot 100.0 3.6E-29 7.7E-34 223.9 24.0 270 165-492 56-337 (338)
47 KOG0281 Beta-TrCP (transducin 100.0 4.9E-31 1.1E-35 239.6 12.2 261 141-496 216-480 (499)
48 PLN00181 protein SPA1-RELATED; 100.0 3.3E-28 7.2E-33 267.4 36.6 305 89-492 458-792 (793)
49 PLN00181 protein SPA1-RELATED; 100.0 8.6E-28 1.9E-32 264.1 37.3 274 165-525 492-787 (793)
50 KOG0305 Anaphase promoting com 100.0 5E-29 1.1E-33 245.5 24.5 271 167-495 187-463 (484)
51 KOG1408 WD40 repeat protein [F 100.0 2.4E-28 5.3E-33 240.4 28.2 422 87-526 100-708 (1080)
52 KOG0282 mRNA splicing factor [ 100.0 5.5E-30 1.2E-34 242.5 14.9 240 206-491 210-503 (503)
53 KOG0645 WD40 repeat protein [G 100.0 1.4E-27 3.1E-32 210.7 29.1 270 208-524 12-304 (312)
54 KOG0313 Microtubule binding pr 100.0 7.5E-28 1.6E-32 221.7 26.8 302 107-492 103-417 (423)
55 KOG0283 WD40 repeat-containing 100.0 6E-28 1.3E-32 243.7 24.3 265 208-494 265-577 (712)
56 KOG0640 mRNA cleavage stimulat 100.0 6.4E-28 1.4E-32 216.4 21.5 291 165-493 121-426 (430)
57 KOG0274 Cdc4 and related F-box 100.0 4E-27 8.7E-32 240.7 29.3 271 166-499 216-488 (537)
58 KOG0293 WD40 repeat-containing 100.0 8.7E-28 1.9E-32 223.1 21.9 278 165-494 233-514 (519)
59 KOG0292 Vesicle coat complex C 100.0 4.3E-28 9.2E-33 244.0 20.1 259 209-525 8-274 (1202)
60 KOG0313 Microtubule binding pr 100.0 3.7E-27 7.9E-32 217.1 23.7 266 209-524 104-411 (423)
61 KOG0310 Conserved WD40 repeat- 100.0 1.9E-27 4E-32 225.8 21.6 271 209-525 25-303 (487)
62 PTZ00420 coronin; Provisional 100.0 5.9E-26 1.3E-30 232.9 34.4 251 174-513 50-318 (568)
63 KOG0278 Serine/threonine kinas 100.0 5.4E-28 1.2E-32 210.8 16.3 285 150-496 12-300 (334)
64 KOG0264 Nucleosome remodeling 100.0 2.1E-27 4.5E-32 224.0 21.3 263 166-494 135-405 (422)
65 PTZ00421 coronin; Provisional 100.0 5.7E-26 1.2E-30 232.0 33.4 211 208-497 73-294 (493)
66 KOG0316 Conserved WD40 repeat- 100.0 9.5E-27 2.1E-31 201.5 23.2 254 100-416 8-267 (307)
67 KOG0293 WD40 repeat-containing 100.0 2.4E-27 5.2E-32 220.2 20.3 274 208-525 222-507 (519)
68 KOG0973 Histone transcription 100.0 1.5E-26 3.2E-31 239.4 26.1 288 209-526 12-350 (942)
69 KOG0643 Translation initiation 100.0 1.3E-26 2.9E-31 204.2 21.8 278 165-495 19-319 (327)
70 KOG0300 WD40 repeat-containing 100.0 1.6E-26 3.4E-31 208.0 21.3 305 154-495 150-478 (481)
71 KOG0275 Conserved WD40 repeat- 99.9 1.1E-27 2.5E-32 215.9 13.3 241 209-526 212-462 (508)
72 KOG0275 Conserved WD40 repeat- 99.9 2.4E-27 5.3E-32 213.8 14.5 277 165-491 222-507 (508)
73 KOG0282 mRNA splicing factor [ 99.9 4E-27 8.8E-32 223.2 16.3 245 99-404 204-503 (503)
74 KOG0772 Uncharacterized conser 99.9 2.1E-26 4.5E-31 219.6 20.1 294 165-493 176-487 (641)
75 KOG0294 WD40 repeat-containing 99.9 3.2E-25 6.9E-30 199.9 26.1 275 170-495 3-283 (362)
76 KOG0283 WD40 repeat-containing 99.9 1.8E-26 3.9E-31 233.1 20.3 235 272-526 259-571 (712)
77 KOG0310 Conserved WD40 repeat- 99.9 7.9E-26 1.7E-30 214.8 23.1 229 166-495 78-311 (487)
78 KOG0647 mRNA export protein (c 99.9 2.6E-25 5.6E-30 199.4 23.7 264 209-519 26-311 (347)
79 KOG0289 mRNA splicing factor [ 99.9 2.9E-25 6.2E-30 207.8 24.8 267 166-492 229-505 (506)
80 KOG0268 Sof1-like rRNA process 99.9 1.4E-26 3E-31 212.1 15.2 272 204-525 60-339 (433)
81 KOG0264 Nucleosome remodeling 99.9 1.7E-25 3.6E-30 211.2 21.9 242 209-524 123-397 (422)
82 KOG0269 WD40 repeat-containing 99.9 6.6E-26 1.4E-30 225.9 20.0 238 165-496 97-343 (839)
83 KOG0268 Sof1-like rRNA process 99.9 2.1E-26 4.5E-31 210.9 14.9 278 103-493 60-345 (433)
84 KOG1407 WD40 repeat protein [F 99.9 1.3E-24 2.7E-29 191.2 25.4 278 103-493 14-311 (313)
85 KOG0973 Histone transcription 99.9 3.7E-25 8E-30 229.1 24.3 308 166-495 23-357 (942)
86 KOG0299 U3 snoRNP-associated p 99.9 6E-25 1.3E-29 207.3 23.6 278 165-519 151-443 (479)
87 KOG0278 Serine/threonine kinas 99.9 8.9E-26 1.9E-30 197.1 14.5 269 208-525 12-291 (334)
88 KOG0641 WD40 repeat protein [G 99.9 2.2E-23 4.7E-28 179.5 29.0 288 165-494 41-350 (350)
89 KOG0641 WD40 repeat protein [G 99.9 1.4E-23 3.1E-28 180.7 27.8 279 209-520 31-338 (350)
90 PTZ00420 coronin; Provisional 99.9 5.8E-24 1.3E-28 218.3 30.2 233 87-409 52-296 (568)
91 PTZ00421 coronin; Provisional 99.9 3.7E-23 8.1E-28 211.4 34.8 221 165-429 84-315 (493)
92 KOG0643 Translation initiation 99.9 1.5E-23 3.3E-28 185.0 27.1 269 208-524 8-310 (327)
93 KOG0288 WD40 repeat protein Ti 99.9 9.2E-26 2E-30 210.0 13.9 268 208-522 173-452 (459)
94 KOG1408 WD40 repeat protein [F 99.9 2.8E-24 6.1E-29 212.0 24.8 313 135-495 329-715 (1080)
95 KOG1332 Vesicle coat complex C 99.9 7.4E-25 1.6E-29 190.9 18.4 242 165-493 20-286 (299)
96 KOG0639 Transducin-like enhanc 99.9 1.4E-24 3.1E-29 206.3 21.1 294 98-492 376-703 (705)
97 KOG0274 Cdc4 and related F-box 99.9 3.8E-24 8.2E-29 218.9 25.8 263 209-524 207-475 (537)
98 KOG1036 Mitotic spindle checkp 99.9 7.4E-24 1.6E-28 190.8 23.9 261 209-521 12-294 (323)
99 KOG0308 Conserved WD40 repeat- 99.9 7.2E-25 1.6E-29 214.6 18.6 239 165-494 34-286 (735)
100 KOG0640 mRNA cleavage stimulat 99.9 1.3E-24 2.7E-29 195.3 17.8 286 209-522 111-417 (430)
101 KOG2106 Uncharacterized conser 99.9 3.8E-22 8.2E-27 190.2 34.6 356 84-522 129-512 (626)
102 KOG0269 WD40 repeat-containing 99.9 8.6E-25 1.9E-29 218.0 17.4 235 211-527 88-336 (839)
103 KOG2096 WD40 repeat protein [G 99.9 3E-23 6.5E-28 187.3 25.5 301 103-522 80-394 (420)
104 KOG1332 Vesicle coat complex C 99.9 1.5E-24 3.3E-29 188.9 16.5 245 209-523 10-278 (299)
105 KOG0301 Phospholipase A2-activ 99.9 1.3E-23 2.9E-28 207.3 24.8 270 103-493 8-288 (745)
106 KOG1407 WD40 repeat protein [F 99.9 4E-23 8.7E-28 181.7 24.0 260 165-522 29-293 (313)
107 KOG1446 Histone H3 (Lys4) meth 99.9 3.2E-22 6.9E-27 181.2 29.5 271 165-495 23-305 (311)
108 KOG0267 Microtubule severing p 99.9 2.8E-25 6E-30 219.8 10.6 226 209-521 27-258 (825)
109 KOG4283 Transcription-coupled 99.9 4.7E-23 1E-27 184.1 23.2 285 165-492 53-364 (397)
110 KOG0646 WD40 repeat protein [G 99.9 2E-23 4.3E-28 197.6 21.4 280 91-425 20-327 (476)
111 KOG0288 WD40 repeat protein Ti 99.9 4.7E-24 1E-28 198.6 16.2 267 165-491 184-459 (459)
112 KOG0289 mRNA splicing factor [ 99.9 4.1E-23 8.9E-28 193.5 21.5 229 210-525 219-456 (506)
113 KOG0639 Transducin-like enhanc 99.9 1.2E-23 2.7E-28 200.0 18.3 270 208-522 417-695 (705)
114 KOG1446 Histone H3 (Lys4) meth 99.9 9E-22 1.9E-26 178.3 28.3 265 209-521 13-295 (311)
115 KOG0646 WD40 repeat protein [G 99.9 1.1E-22 2.3E-27 192.6 22.8 202 279-497 81-311 (476)
116 KOG0305 Anaphase promoting com 99.9 5.8E-23 1.3E-27 202.7 21.5 256 90-408 198-463 (484)
117 KOG4283 Transcription-coupled 99.9 1.6E-22 3.6E-27 180.7 20.9 232 208-496 41-279 (397)
118 KOG0308 Conserved WD40 repeat- 99.9 2.6E-22 5.5E-27 196.8 23.8 244 140-424 45-304 (735)
119 KOG0772 Uncharacterized conser 99.9 8.1E-23 1.8E-27 195.2 19.8 235 209-522 166-430 (641)
120 KOG0300 WD40 repeat-containing 99.9 8.8E-23 1.9E-27 184.0 18.7 206 203-494 141-387 (481)
121 KOG0302 Ribosome Assembly prot 99.9 1.8E-22 3.9E-27 186.1 19.3 205 167-409 164-381 (440)
122 KOG0267 Microtubule severing p 99.9 1E-23 2.2E-28 208.9 9.7 212 166-429 38-250 (825)
123 KOG0299 U3 snoRNP-associated p 99.9 4.6E-22 1E-26 187.9 20.3 245 209-524 141-403 (479)
124 KOG0301 Phospholipase A2-activ 99.9 5E-22 1.1E-26 196.2 21.3 253 167-524 24-281 (745)
125 KOG2445 Nuclear pore complex c 99.9 3.7E-21 7.9E-26 173.2 24.2 265 166-493 23-318 (361)
126 KOG0270 WD40 repeat-containing 99.9 4.8E-22 1E-26 187.1 19.3 249 165-496 189-452 (463)
127 KOG0302 Ribosome Assembly prot 99.9 6.6E-22 1.4E-26 182.4 19.6 220 209-496 150-381 (440)
128 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 8.1E-20 1.7E-24 178.2 35.7 268 169-497 2-283 (300)
129 KOG1539 WD repeat protein [Gen 99.9 3.6E-21 7.9E-26 193.7 25.9 366 87-492 222-647 (910)
130 KOG0321 WD40 repeat-containing 99.9 1.6E-21 3.5E-26 190.9 21.5 285 166-496 62-394 (720)
131 KOG0294 WD40 repeat-containing 99.9 5.8E-21 1.3E-25 172.5 23.4 264 225-525 3-275 (362)
132 KOG2106 Uncharacterized conser 99.9 4E-20 8.7E-25 176.5 30.0 396 89-527 180-622 (626)
133 KOG1063 RNA polymerase II elon 99.9 8E-21 1.7E-25 187.7 25.4 419 88-527 33-600 (764)
134 KOG2055 WD40 repeat protein [G 99.9 6.9E-21 1.5E-25 180.0 23.7 272 209-525 212-506 (514)
135 KOG0647 mRNA export protein (c 99.9 3.1E-20 6.8E-25 166.9 22.7 196 165-411 36-286 (347)
136 KOG1274 WD40 repeat protein [G 99.9 5.6E-20 1.2E-24 187.3 26.4 264 208-520 11-289 (933)
137 KOG0650 WD40 repeat nucleolar 99.9 9.9E-21 2.1E-25 184.1 19.1 301 100-491 391-733 (733)
138 KOG2096 WD40 repeat protein [G 99.9 4.9E-20 1.1E-24 166.6 22.0 237 208-520 84-350 (420)
139 KOG1273 WD40 repeat protein [G 99.9 1.5E-20 3.2E-25 169.7 18.3 233 213-492 26-321 (405)
140 KOG2048 WD40 repeat protein [G 99.9 1.6E-19 3.5E-24 178.3 27.0 270 209-523 24-311 (691)
141 KOG4328 WD40 protein [Function 99.9 2.4E-20 5.3E-25 176.2 19.5 278 208-526 184-490 (498)
142 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 3E-18 6.4E-23 167.2 34.7 277 139-475 8-300 (300)
143 KOG4328 WD40 protein [Function 99.9 5.4E-20 1.2E-24 173.9 20.5 282 167-494 199-496 (498)
144 KOG4378 Nuclear protein COP1 [ 99.9 6.7E-20 1.4E-24 174.6 20.8 219 213-476 82-304 (673)
145 KOG2445 Nuclear pore complex c 99.9 2.5E-19 5.5E-24 161.4 23.0 240 208-524 11-311 (361)
146 KOG0270 WD40 repeat-containing 99.8 8.3E-20 1.8E-24 172.1 20.2 258 165-497 134-408 (463)
147 KOG1007 WD repeat protein TSSC 99.8 1E-19 2.3E-24 162.4 19.5 234 209-495 122-363 (370)
148 KOG1274 WD40 repeat protein [G 99.8 1.9E-19 4.2E-24 183.4 23.7 238 106-407 10-263 (933)
149 KOG2055 WD40 repeat protein [G 99.8 3.3E-19 7.2E-24 168.7 23.2 276 165-493 222-512 (514)
150 KOG1445 Tumor-specific antigen 99.8 3.9E-19 8.6E-24 173.8 23.6 147 323-528 629-791 (1012)
151 KOG1036 Mitotic spindle checkp 99.8 7.8E-19 1.7E-23 158.6 23.8 254 165-482 22-293 (323)
152 KOG0649 WD40 repeat protein [G 99.8 2.8E-18 6E-23 149.9 26.2 253 165-500 19-281 (325)
153 KOG0307 Vesicle coat complex C 99.8 2.3E-20 5E-25 194.6 15.8 239 169-496 81-330 (1049)
154 KOG2048 WD40 repeat protein [G 99.8 4.1E-18 8.9E-23 168.5 29.5 272 165-494 34-320 (691)
155 KOG1063 RNA polymerase II elon 99.8 1.1E-18 2.3E-23 172.8 25.1 353 106-493 264-763 (764)
156 KOG1188 WD40 repeat protein [G 99.8 2.6E-19 5.5E-24 163.7 19.0 289 169-506 41-359 (376)
157 KOG1009 Chromatin assembly com 99.8 3.5E-19 7.6E-24 166.2 19.8 172 209-410 12-199 (434)
158 KOG2919 Guanine nucleotide-bin 99.8 5.4E-19 1.2E-23 160.3 19.6 202 165-407 120-328 (406)
159 KOG1034 Transcriptional repres 99.8 1.1E-18 2.3E-23 158.8 19.4 243 209-493 88-383 (385)
160 KOG2919 Guanine nucleotide-bin 99.8 5E-18 1.1E-22 154.1 21.3 268 165-519 58-358 (406)
161 KOG0303 Actin-binding protein 99.8 5.8E-18 1.3E-22 157.4 22.1 167 207-407 78-250 (472)
162 KOG0321 WD40 repeat-containing 99.8 1E-18 2.2E-23 171.4 17.3 239 216-527 55-343 (720)
163 KOG4378 Nuclear protein COP1 [ 99.8 1.7E-18 3.7E-23 165.1 18.1 264 171-526 5-275 (673)
164 KOG1034 Transcriptional repres 99.8 1.2E-17 2.7E-22 151.9 20.5 284 209-527 37-379 (385)
165 KOG0307 Vesicle coat complex C 99.8 6E-19 1.3E-23 184.1 13.2 210 209-496 63-287 (1049)
166 KOG1273 WD40 repeat protein [G 99.8 4E-17 8.7E-22 147.7 21.5 225 282-521 26-269 (405)
167 KOG0650 WD40 repeat nucleolar 99.8 2.2E-17 4.8E-22 161.0 19.8 288 165-525 409-729 (733)
168 KOG1445 Tumor-specific antigen 99.8 3.4E-17 7.4E-22 160.4 20.0 248 165-459 588-850 (1012)
169 KOG1007 WD repeat protein TSSC 99.8 4.9E-17 1.1E-21 145.5 19.0 240 167-492 25-288 (370)
170 COG2319 FOG: WD40 repeat [Gene 99.8 7.1E-15 1.5E-19 149.2 37.8 350 104-522 60-433 (466)
171 KOG1963 WD40 repeat protein [G 99.8 6E-16 1.3E-20 157.9 29.0 275 208-522 203-530 (792)
172 KOG0290 Conserved WD40 repeat- 99.8 1.3E-16 2.9E-21 142.9 20.2 244 212-495 46-320 (364)
173 KOG0649 WD40 repeat protein [G 99.8 2.1E-16 4.6E-21 138.2 20.6 237 212-520 12-263 (325)
174 KOG0303 Actin-binding protein 99.8 8.6E-17 1.9E-21 149.7 19.1 128 273-414 75-211 (472)
175 KOG0642 Cell-cycle nuclear pro 99.7 7.3E-17 1.6E-21 156.7 17.7 216 165-415 303-570 (577)
176 KOG1587 Cytoplasmic dynein int 99.7 5.2E-16 1.1E-20 158.1 24.1 257 178-526 222-511 (555)
177 KOG0642 Cell-cycle nuclear pro 99.7 3.3E-17 7.3E-22 159.1 13.0 256 208-496 292-564 (577)
178 KOG0644 Uncharacterized conser 99.7 4E-18 8.8E-23 171.7 6.4 235 270-521 181-458 (1113)
179 KOG1587 Cytoplasmic dynein int 99.7 1.3E-15 2.8E-20 155.3 23.8 255 165-496 252-519 (555)
180 KOG1538 Uncharacterized conser 99.7 8E-16 1.7E-20 151.7 20.7 267 166-493 22-293 (1081)
181 KOG0322 G-protein beta subunit 99.7 2.4E-16 5.3E-21 139.5 15.2 262 103-405 8-322 (323)
182 KOG4227 WD40 repeat protein [G 99.7 3E-15 6.6E-20 139.1 20.9 283 202-524 48-380 (609)
183 KOG4227 WD40 repeat protein [G 99.7 2.7E-15 5.8E-20 139.5 20.5 282 167-493 67-387 (609)
184 COG2319 FOG: WD40 repeat [Gene 99.7 5.1E-14 1.1E-18 142.9 31.4 268 208-519 63-346 (466)
185 KOG1524 WD40 repeat-containing 99.7 1.5E-15 3.2E-20 146.5 18.2 244 209-525 13-280 (737)
186 KOG0290 Conserved WD40 repeat- 99.7 5.1E-15 1.1E-19 132.8 18.8 194 176-407 119-319 (364)
187 KOG1009 Chromatin assembly com 99.7 1.7E-14 3.8E-19 135.1 22.7 187 146-351 9-195 (434)
188 KOG1524 WD40 repeat-containing 99.7 3.4E-15 7.3E-20 144.1 18.3 165 166-373 73-237 (737)
189 KOG1334 WD40 repeat protein [G 99.7 1.4E-15 3E-20 145.3 14.8 293 103-494 136-467 (559)
190 KOG0322 G-protein beta subunit 99.7 3.3E-15 7.1E-20 132.4 15.2 236 209-493 13-323 (323)
191 KOG1517 Guanine nucleotide bin 99.6 2.5E-14 5.4E-19 148.1 23.3 283 132-496 1076-1384(1387)
192 KOG1523 Actin-related protein 99.6 1.2E-14 2.7E-19 132.2 18.4 222 209-496 9-239 (361)
193 KOG1523 Actin-related protein 99.6 1.7E-14 3.8E-19 131.2 19.1 199 165-409 19-239 (361)
194 KOG1963 WD40 repeat protein [G 99.6 2.4E-13 5.2E-18 139.1 29.5 303 139-495 169-540 (792)
195 PRK11028 6-phosphogluconolacto 99.6 2.8E-13 6E-18 134.3 29.3 267 172-494 6-305 (330)
196 KOG1240 Protein kinase contain 99.6 6.1E-14 1.3E-18 147.5 25.3 348 98-491 1037-1431(1431)
197 KOG1272 WD40-repeat-containing 99.6 4.9E-16 1.1E-20 147.5 8.5 255 165-523 138-401 (545)
198 KOG2394 WD40 protein DMR-N9 [G 99.6 4.4E-14 9.5E-19 136.7 21.7 172 220-427 183-384 (636)
199 KOG1188 WD40 repeat protein [G 99.6 1.5E-14 3.2E-19 132.8 16.8 191 225-497 42-246 (376)
200 KOG1538 Uncharacterized conser 99.6 1.5E-14 3.3E-19 142.8 17.6 265 212-525 14-287 (1081)
201 KOG0771 Prolactin regulatory e 99.6 1.2E-14 2.6E-19 137.1 15.7 195 214-495 148-356 (398)
202 KOG2110 Uncharacterized conser 99.6 2.1E-12 4.6E-17 120.0 29.4 160 210-409 87-251 (391)
203 KOG4497 Uncharacterized conser 99.6 1.1E-13 2.5E-18 126.2 20.6 320 135-521 13-422 (447)
204 PRK01742 tolB translocation pr 99.6 9.5E-14 2.1E-18 142.1 21.5 232 178-475 184-425 (429)
205 KOG1517 Guanine nucleotide bin 99.6 1.7E-13 3.8E-18 142.0 23.0 273 165-522 1073-1372(1387)
206 KOG0771 Prolactin regulatory e 99.6 6.1E-14 1.3E-18 132.4 17.6 192 165-408 153-356 (398)
207 PF08662 eIF2A: Eukaryotic tra 99.6 2.8E-13 6E-18 122.3 21.1 157 214-414 9-186 (194)
208 KOG2110 Uncharacterized conser 99.6 5.7E-13 1.2E-17 123.8 21.5 225 280-526 6-243 (391)
209 KOG3881 Uncharacterized conser 99.6 3.7E-13 8E-18 125.8 20.3 222 165-425 112-339 (412)
210 PRK11028 6-phosphogluconolacto 99.6 1.1E-11 2.4E-16 122.8 32.3 236 165-453 43-304 (330)
211 KOG1240 Protein kinase contain 99.6 1.3E-12 2.8E-17 137.8 25.5 218 165-416 1058-1283(1431)
212 KOG2139 WD40 repeat protein [G 99.5 3.3E-12 7.1E-17 118.3 22.9 195 166-399 108-304 (445)
213 KOG0644 Uncharacterized conser 99.5 1.7E-14 3.6E-19 146.0 8.0 119 202-351 182-300 (1113)
214 PRK01742 tolB translocation pr 99.5 2.4E-12 5.1E-17 131.8 22.6 211 274-512 198-426 (429)
215 KOG1310 WD40 repeat protein [G 99.5 2.4E-13 5.1E-18 131.9 13.8 209 270-496 41-306 (758)
216 KOG3881 Uncharacterized conser 99.5 4.3E-12 9.3E-17 118.8 18.4 176 166-373 159-341 (412)
217 PRK03629 tolB translocation pr 99.5 4.1E-11 8.9E-16 122.5 27.3 216 209-475 197-427 (429)
218 KOG2111 Uncharacterized conser 99.5 3.2E-10 7E-15 103.7 29.4 281 136-494 11-323 (346)
219 PRK05137 tolB translocation pr 99.5 3.9E-11 8.5E-16 123.2 26.8 186 273-521 195-396 (435)
220 KOG1310 WD40 repeat protein [G 99.5 7.5E-13 1.6E-17 128.5 12.9 223 103-355 44-307 (758)
221 KOG1272 WD40-repeat-containing 99.4 1.9E-13 4.2E-18 130.1 8.4 213 280-515 130-348 (545)
222 KOG2321 WD40 repeat protein [G 99.4 1.2E-11 2.7E-16 120.9 20.2 192 209-416 50-268 (703)
223 PRK05137 tolB translocation pr 99.4 7.1E-11 1.5E-15 121.3 27.2 157 209-408 200-368 (435)
224 KOG1409 Uncharacterized conser 99.4 1.4E-11 3.1E-16 113.4 19.3 328 103-494 18-395 (404)
225 PF08662 eIF2A: Eukaryotic tra 99.4 1.5E-11 3.3E-16 111.0 19.3 149 284-497 10-183 (194)
226 KOG0974 WD-repeat protein WDR6 99.4 1.5E-11 3.3E-16 128.3 20.6 252 143-496 18-291 (967)
227 KOG2321 WD40 repeat protein [G 99.4 1.9E-11 4.1E-16 119.6 19.8 195 165-407 142-344 (703)
228 PRK04922 tolB translocation pr 99.4 6.4E-11 1.4E-15 121.6 24.4 178 209-430 202-391 (433)
229 PF02239 Cytochrom_D1: Cytochr 99.4 9.3E-10 2E-14 109.4 31.7 299 169-522 6-336 (369)
230 KOG2139 WD40 repeat protein [G 99.4 6.2E-11 1.3E-15 110.0 21.4 156 209-406 97-268 (445)
231 PRK03629 tolB translocation pr 99.4 1.4E-10 3.1E-15 118.5 26.6 182 278-522 197-394 (429)
232 PF02239 Cytochrom_D1: Cytochr 99.4 2.7E-10 5.8E-15 113.2 26.4 323 140-516 14-365 (369)
233 PRK02889 tolB translocation pr 99.4 9.6E-11 2.1E-15 119.9 23.8 183 277-522 193-391 (427)
234 COG4946 Uncharacterized protei 99.4 4.1E-09 8.8E-14 101.3 32.7 136 209-373 358-498 (668)
235 PRK04922 tolB translocation pr 99.4 1.1E-10 2.4E-15 119.8 24.0 183 276-521 200-398 (433)
236 PRK02889 tolB translocation pr 99.4 2.8E-10 6E-15 116.5 25.3 178 209-430 194-383 (427)
237 KOG2111 Uncharacterized conser 99.3 3.8E-09 8.2E-14 96.9 28.1 220 212-494 7-257 (346)
238 KOG1334 WD40 repeat protein [G 99.3 1.7E-11 3.7E-16 117.7 11.9 275 88-408 163-468 (559)
239 TIGR02800 propeller_TolB tol-p 99.3 1.1E-09 2.4E-14 112.3 26.0 182 278-522 188-385 (417)
240 KOG0974 WD-repeat protein WDR6 99.3 7.6E-11 1.7E-15 123.1 17.0 188 165-408 96-290 (967)
241 KOG0309 Conserved WD40 repeat- 99.3 1.7E-11 3.7E-16 123.0 11.4 247 165-496 78-342 (1081)
242 KOG4497 Uncharacterized conser 99.3 1.5E-10 3.4E-15 106.1 15.9 168 165-373 17-188 (447)
243 KOG0280 Uncharacterized conser 99.3 5.9E-10 1.3E-14 101.0 19.2 273 176-494 44-334 (339)
244 KOG4547 WD40 repeat-containing 99.2 1.3E-09 2.9E-14 107.6 21.8 197 166-408 3-222 (541)
245 PF10282 Lactonase: Lactonase, 99.2 7.8E-08 1.7E-12 95.6 34.1 267 171-522 2-312 (345)
246 TIGR02800 propeller_TolB tol-p 99.2 7.2E-09 1.6E-13 106.3 27.4 177 209-429 188-376 (417)
247 KOG4547 WD40 repeat-containing 99.2 1.2E-09 2.7E-14 107.8 19.7 200 221-494 4-221 (541)
248 PRK01029 tolB translocation pr 99.2 4.6E-09 9.9E-14 107.1 24.2 162 210-411 184-364 (428)
249 PRK00178 tolB translocation pr 99.2 1.3E-08 2.8E-13 104.7 26.5 183 277-522 196-394 (430)
250 PRK01029 tolB translocation pr 99.2 1.7E-08 3.8E-13 102.9 26.2 200 165-414 193-411 (428)
251 PRK00178 tolB translocation pr 99.2 2.6E-08 5.7E-13 102.4 27.6 177 209-429 197-385 (430)
252 KOG1064 RAVE (regulator of V-A 99.2 1.3E-10 2.8E-15 126.9 10.8 188 165-416 2217-2408(2439)
253 KOG0280 Uncharacterized conser 99.1 2.8E-09 6.1E-14 96.6 16.6 195 165-408 130-335 (339)
254 TIGR03300 assembly_YfgL outer 99.1 1.2E-07 2.6E-12 95.7 30.8 292 136-490 69-376 (377)
255 PF10282 Lactonase: Lactonase, 99.1 1.8E-07 3.9E-12 93.0 30.5 251 165-493 45-322 (345)
256 COG5354 Uncharacterized protei 99.1 7.8E-08 1.7E-12 93.6 26.1 295 165-519 80-417 (561)
257 PRK04792 tolB translocation pr 99.1 6.5E-08 1.4E-12 99.5 27.4 195 165-415 226-433 (448)
258 KOG1409 Uncharacterized conser 99.1 6.4E-09 1.4E-13 96.2 17.4 236 166-496 34-273 (404)
259 KOG2315 Predicted translation 99.1 1.1E-07 2.5E-12 93.5 26.8 200 208-496 163-393 (566)
260 PRK04792 tolB translocation pr 99.1 3.2E-08 6.9E-13 101.8 24.4 178 209-430 216-405 (448)
261 KOG1354 Serine/threonine prote 99.1 7.2E-09 1.6E-13 95.9 17.2 235 165-415 34-311 (433)
262 KOG2315 Predicted translation 99.1 1.5E-07 3.3E-12 92.7 25.8 271 212-521 36-374 (566)
263 TIGR03300 assembly_YfgL outer 99.0 3.1E-07 6.7E-12 92.8 29.3 293 166-526 63-374 (377)
264 KOG3914 WD repeat protein WDR4 99.0 2.3E-09 5E-14 101.3 11.8 166 212-416 64-233 (390)
265 KOG1064 RAVE (regulator of V-A 99.0 1.2E-09 2.7E-14 119.6 11.3 187 209-495 2207-2400(2439)
266 KOG1354 Serine/threonine prote 99.0 2.1E-08 4.6E-13 92.8 15.3 258 107-409 23-362 (433)
267 TIGR02658 TTQ_MADH_Hv methylam 98.9 2.1E-06 4.6E-11 83.7 29.3 228 165-415 54-339 (352)
268 KOG1912 WD40 repeat protein [G 98.9 9.5E-07 2.1E-11 90.2 26.4 398 100-519 46-539 (1062)
269 KOG4532 WD40-like repeat conta 98.9 7E-07 1.5E-11 80.3 22.6 200 167-416 83-292 (344)
270 PLN02919 haloacid dehalogenase 98.9 1.8E-06 3.9E-11 97.2 31.7 227 212-496 625-891 (1057)
271 COG2706 3-carboxymuconate cycl 98.9 1.1E-05 2.3E-10 76.1 30.4 208 165-407 48-275 (346)
272 COG2706 3-carboxymuconate cycl 98.9 1.5E-06 3.2E-11 81.8 24.4 185 280-522 40-264 (346)
273 KOG4714 Nucleoporin [Nuclear s 98.9 5E-08 1.1E-12 87.2 13.2 214 217-491 96-316 (319)
274 KOG2041 WD40 repeat protein [G 98.9 3.7E-07 8.1E-12 92.2 20.8 279 166-477 24-320 (1189)
275 PLN02919 haloacid dehalogenase 98.8 3.9E-06 8.4E-11 94.6 30.3 173 213-410 685-892 (1057)
276 PF04762 IKI3: IKI3 family; I 98.8 1.8E-06 3.9E-11 95.4 26.7 215 165-409 84-336 (928)
277 COG4946 Uncharacterized protei 98.8 4.7E-06 1E-10 80.7 24.6 139 278-430 358-501 (668)
278 KOG3914 WD repeat protein WDR4 98.8 6.7E-08 1.5E-12 91.6 11.8 156 281-497 64-227 (390)
279 TIGR02658 TTQ_MADH_Hv methylam 98.8 4.4E-05 9.6E-10 74.6 31.7 238 218-497 53-334 (352)
280 KOG4190 Uncharacterized conser 98.7 7.7E-08 1.7E-12 94.2 11.6 174 206-415 731-915 (1034)
281 PRK04043 tolB translocation pr 98.7 4.3E-06 9.4E-11 84.9 24.9 115 281-410 189-313 (419)
282 KOG2314 Translation initiation 98.7 7.2E-06 1.6E-10 81.0 23.7 293 132-523 212-559 (698)
283 KOG1912 WD40 repeat protein [G 98.7 4.6E-06 9.9E-11 85.4 21.7 245 209-495 14-306 (1062)
284 KOG2041 WD40 repeat protein [G 98.7 3.1E-07 6.8E-12 92.7 13.2 171 209-406 13-186 (1189)
285 PRK11138 outer membrane biogen 98.7 5.8E-05 1.3E-09 76.7 30.2 295 136-493 73-394 (394)
286 PF04762 IKI3: IKI3 family; I 98.6 3.2E-05 7E-10 85.7 29.8 158 209-404 74-287 (928)
287 PF07433 DUF1513: Protein of u 98.6 1.9E-05 4.1E-10 74.5 23.8 237 212-522 6-277 (305)
288 COG5170 CDC55 Serine/threonine 98.6 6.1E-07 1.3E-11 82.2 13.0 256 209-522 25-358 (460)
289 KOG4532 WD40-like repeat conta 98.6 1.1E-05 2.3E-10 72.9 20.5 200 136-373 88-312 (344)
290 PRK04043 tolB translocation pr 98.6 2.2E-05 4.8E-10 79.8 25.7 173 212-429 189-379 (419)
291 COG5354 Uncharacterized protei 98.6 3.2E-06 7E-11 82.6 18.3 245 209-496 31-309 (561)
292 KOG4714 Nucleoporin [Nuclear s 98.6 5.1E-07 1.1E-11 80.9 11.8 209 212-494 38-255 (319)
293 KOG2695 WD40 repeat protein [G 98.6 1.5E-07 3.2E-12 87.4 8.5 162 216-417 217-387 (425)
294 COG5170 CDC55 Serine/threonine 98.6 7.9E-07 1.7E-11 81.5 12.7 227 166-414 36-318 (460)
295 PF15492 Nbas_N: Neuroblastoma 98.6 8.4E-05 1.8E-09 68.2 25.6 184 282-497 46-263 (282)
296 PF08450 SGL: SMP-30/Gluconola 98.6 0.00017 3.7E-09 68.1 29.0 220 215-520 4-244 (246)
297 KOG1275 PAB-dependent poly(A) 98.6 2.7E-06 6E-11 88.5 17.6 183 165-404 144-340 (1118)
298 PF15492 Nbas_N: Neuroblastoma 98.6 4.5E-05 9.7E-10 70.0 23.4 171 212-416 45-269 (282)
299 KOG2695 WD40 repeat protein [G 98.6 4E-07 8.6E-12 84.6 9.7 142 209-373 251-402 (425)
300 PF00400 WD40: WD domain, G-be 98.5 3.6E-07 7.9E-12 58.8 6.2 39 311-349 1-39 (39)
301 KOG0309 Conserved WD40 repeat- 98.5 5.6E-07 1.2E-11 91.3 10.4 201 209-494 23-233 (1081)
302 PF13360 PQQ_2: PQQ-like domai 98.5 0.00024 5.2E-09 66.5 27.9 216 141-413 2-237 (238)
303 KOG2314 Translation initiation 98.5 3.5E-05 7.7E-10 76.2 21.5 265 213-522 213-513 (698)
304 PRK11138 outer membrane biogen 98.5 0.00022 4.8E-09 72.4 28.5 252 225-526 122-389 (394)
305 KOG4190 Uncharacterized conser 98.5 2.3E-07 5E-12 91.0 6.0 204 272-493 728-948 (1034)
306 PF00400 WD40: WD domain, G-be 98.5 5.6E-07 1.2E-11 58.0 6.0 39 353-404 1-39 (39)
307 PF13360 PQQ_2: PQQ-like domai 98.5 4.4E-05 9.5E-10 71.6 21.5 192 290-498 35-235 (238)
308 PF08450 SGL: SMP-30/Gluconola 98.4 0.00035 7.5E-09 66.0 27.3 194 141-372 11-233 (246)
309 KOG1832 HIV-1 Vpr-binding prot 98.4 1.3E-07 2.8E-12 97.5 3.9 196 266-495 1088-1293(1516)
310 KOG2066 Vacuolar assembly/sort 98.4 2.5E-05 5.5E-10 80.6 17.9 153 209-416 38-197 (846)
311 KOG1920 IkappaB kinase complex 98.3 0.0002 4.2E-09 77.6 24.8 214 165-409 77-325 (1265)
312 PF11768 DUF3312: Protein of u 98.3 0.0006 1.3E-08 68.9 26.8 121 280-415 206-338 (545)
313 KOG4649 PQQ (pyrrolo-quinoline 98.3 0.0025 5.4E-08 57.8 27.2 304 125-495 16-353 (354)
314 KOG0882 Cyclophilin-related pe 98.3 3.7E-06 8.1E-11 80.9 9.9 217 209-496 8-234 (558)
315 PF07433 DUF1513: Protein of u 98.3 0.0013 2.8E-08 62.4 26.3 160 216-415 56-256 (305)
316 PF11768 DUF3312: Protein of u 98.3 7.6E-05 1.6E-09 75.1 18.2 72 279-352 259-330 (545)
317 KOG3621 WD40 repeat-containing 98.2 0.00012 2.7E-09 74.7 18.1 155 165-354 42-200 (726)
318 KOG2066 Vacuolar assembly/sort 98.2 8.8E-05 1.9E-09 76.8 16.7 175 165-407 46-234 (846)
319 KOG0882 Cyclophilin-related pe 98.2 2.4E-05 5.3E-10 75.5 12.0 227 168-418 20-317 (558)
320 KOG1275 PAB-dependent poly(A) 98.1 6.4E-05 1.4E-09 78.7 15.5 180 290-491 146-340 (1118)
321 KOG1832 HIV-1 Vpr-binding prot 98.1 3.1E-06 6.7E-11 87.7 4.0 193 209-461 1100-1299(1516)
322 KOG2114 Vacuolar assembly/sort 98.0 0.00049 1.1E-08 72.0 19.3 211 165-415 32-252 (933)
323 PF00930 DPPIV_N: Dipeptidyl p 98.0 0.0022 4.7E-08 64.1 23.6 222 280-521 43-347 (353)
324 PF08596 Lgl_C: Lethal giant l 98.0 0.0058 1.3E-07 61.3 26.3 138 212-351 3-173 (395)
325 PRK02888 nitrous-oxide reducta 98.0 0.0021 4.5E-08 66.6 23.2 111 285-409 198-354 (635)
326 KOG1008 Uncharacterized conser 98.0 2.4E-06 5.2E-11 85.8 1.9 197 166-407 68-276 (783)
327 cd00216 PQQ_DH Dehydrogenases 98.0 0.025 5.4E-07 59.1 31.0 196 299-500 173-431 (488)
328 KOG1008 Uncharacterized conser 97.9 3.8E-06 8.2E-11 84.4 1.4 157 210-405 56-224 (783)
329 KOG3617 WD40 and TPR repeat-co 97.9 0.0007 1.5E-08 70.5 16.5 110 214-352 19-132 (1416)
330 KOG2114 Vacuolar assembly/sort 97.8 0.0076 1.6E-07 63.4 24.1 204 139-367 42-260 (933)
331 KOG1920 IkappaB kinase complex 97.8 0.0018 3.9E-08 70.4 20.1 153 210-404 68-272 (1265)
332 PRK02888 nitrous-oxide reducta 97.8 0.0034 7.4E-08 65.1 21.3 104 287-407 284-405 (635)
333 KOG1645 RING-finger-containing 97.8 0.0011 2.5E-08 63.4 16.2 244 105-406 189-461 (463)
334 PF06977 SdiA-regulated: SdiA- 97.8 0.028 6.1E-07 52.5 25.2 165 211-415 22-209 (248)
335 PF06433 Me-amine-dh_H: Methyl 97.7 0.019 4.1E-07 55.3 22.6 223 144-416 69-330 (342)
336 PF14583 Pectate_lyase22: Olig 97.7 0.019 4E-07 56.4 22.3 269 213-521 38-370 (386)
337 KOG4640 Anaphase-promoting com 97.6 0.00026 5.7E-09 71.5 9.6 93 280-373 21-115 (665)
338 cd00216 PQQ_DH Dehydrogenases 97.6 0.14 3E-06 53.6 30.7 292 137-463 66-434 (488)
339 PF08596 Lgl_C: Lethal giant l 97.5 0.043 9.4E-07 55.2 24.0 179 209-416 85-300 (395)
340 COG0823 TolB Periplasmic compo 97.5 0.0077 1.7E-07 61.1 18.7 178 210-429 192-381 (425)
341 PF04053 Coatomer_WDAD: Coatom 97.4 0.045 9.8E-07 55.8 22.5 155 165-373 41-206 (443)
342 KOG4649 PQQ (pyrrolo-quinoline 97.4 0.1 2.2E-06 47.8 23.0 118 216-361 16-133 (354)
343 COG0823 TolB Periplasmic compo 97.4 0.0073 1.6E-07 61.3 16.5 169 165-373 201-379 (425)
344 KOG4640 Anaphase-promoting com 97.4 0.00077 1.7E-08 68.3 9.1 93 211-331 21-115 (665)
345 PF04053 Coatomer_WDAD: Coatom 97.4 0.013 2.8E-07 59.7 17.7 143 209-407 31-174 (443)
346 KOG1645 RING-finger-containing 97.3 0.00082 1.8E-08 64.4 7.6 94 303-409 175-269 (463)
347 KOG2444 WD40 repeat protein [G 97.3 0.00053 1.1E-08 61.1 5.8 103 225-352 72-178 (238)
348 smart00320 WD40 WD40 repeats. 97.3 0.00087 1.9E-08 41.5 5.5 39 311-349 2-40 (40)
349 KOG3621 WD40 repeat-containing 97.2 0.0021 4.5E-08 66.1 10.5 138 209-372 32-179 (726)
350 smart00320 WD40 WD40 repeats. 97.2 0.00098 2.1E-08 41.3 5.3 38 270-307 3-40 (40)
351 PRK13616 lipoprotein LpqB; Pro 97.2 0.084 1.8E-06 56.1 22.0 107 281-405 398-524 (591)
352 PF14783 BBS2_Mid: Ciliary BBS 97.1 0.056 1.2E-06 43.0 15.0 102 213-347 2-110 (111)
353 PF14783 BBS2_Mid: Ciliary BBS 97.1 0.07 1.5E-06 42.5 15.2 104 282-401 2-109 (111)
354 COG3386 Gluconolactonase [Carb 97.1 0.14 3.1E-06 49.5 20.6 131 280-425 111-262 (307)
355 PF00780 CNH: CNH domain; Int 97.0 0.32 7E-06 46.5 24.4 146 221-414 6-173 (275)
356 PF00930 DPPIV_N: Dipeptidyl p 97.0 0.097 2.1E-06 52.2 19.8 248 165-429 51-339 (353)
357 PF06977 SdiA-regulated: SdiA- 97.0 0.23 5E-06 46.4 20.7 194 166-402 31-246 (248)
358 COG3490 Uncharacterized protei 97.0 0.066 1.4E-06 49.6 16.1 160 216-413 119-317 (366)
359 KOG3617 WD40 and TPR repeat-co 97.0 0.0015 3.2E-08 68.3 6.3 109 283-406 19-131 (1416)
360 PF04841 Vps16_N: Vps16, N-ter 96.9 0.56 1.2E-05 47.7 27.3 164 211-415 81-255 (410)
361 PF08553 VID27: VID27 cytoplas 96.9 0.033 7.1E-07 60.2 16.0 123 269-406 514-647 (794)
362 TIGR03075 PQQ_enz_alc_DH PQQ-d 96.9 0.76 1.7E-05 48.4 29.8 73 284-356 238-338 (527)
363 PF08553 VID27: VID27 cytoplas 96.7 0.033 7.1E-07 60.1 14.4 106 167-308 541-646 (794)
364 PRK13616 lipoprotein LpqB; Pro 96.6 0.15 3.3E-06 54.1 18.7 103 280-402 350-472 (591)
365 COG3391 Uncharacterized conser 96.6 0.9 1.9E-05 45.8 24.2 164 212-416 117-293 (381)
366 COG3391 Uncharacterized conser 96.6 0.9 1.9E-05 45.8 25.1 220 212-476 75-309 (381)
367 COG3490 Uncharacterized protei 96.6 0.13 2.7E-06 47.8 15.4 105 212-340 69-180 (366)
368 PF03178 CPSF_A: CPSF A subuni 96.6 0.43 9.4E-06 46.9 20.9 194 168-403 42-262 (321)
369 TIGR03075 PQQ_enz_alc_DH PQQ-d 96.5 1.4 3E-05 46.5 25.2 27 390-416 474-500 (527)
370 PF02897 Peptidase_S9_N: Proly 96.5 1.3 2.8E-05 45.3 24.9 197 282-496 126-361 (414)
371 KOG2079 Vacuolar assembly/sort 96.4 0.018 3.8E-07 62.3 9.4 105 290-406 98-203 (1206)
372 PF00780 CNH: CNH domain; Int 96.3 1.1 2.4E-05 42.7 25.6 162 166-359 5-173 (275)
373 PHA02713 hypothetical protein; 96.2 0.13 2.7E-06 54.7 15.2 93 302-409 433-536 (557)
374 PF07995 GSDH: Glucose / Sorbo 96.2 1.2 2.6E-05 44.0 21.0 71 456-527 244-331 (331)
375 KOG2395 Protein involved in va 96.2 0.25 5.5E-06 49.7 15.8 122 269-406 366-500 (644)
376 COG3386 Gluconolactonase [Carb 96.2 0.8 1.7E-05 44.4 19.2 212 216-475 30-264 (307)
377 PF06433 Me-amine-dh_H: Methyl 96.2 0.75 1.6E-05 44.6 18.5 171 169-361 148-330 (342)
378 PF03178 CPSF_A: CPSF A subuni 96.1 0.4 8.7E-06 47.1 17.2 110 279-406 88-202 (321)
379 PF12894 Apc4_WD40: Anaphase-p 96.0 0.018 3.8E-07 38.3 4.9 32 209-241 10-41 (47)
380 PF04841 Vps16_N: Vps16, N-ter 96.0 2 4.4E-05 43.7 24.3 84 286-373 185-269 (410)
381 PF12894 Apc4_WD40: Anaphase-p 95.8 0.03 6.6E-07 37.2 5.1 33 321-354 11-43 (47)
382 PF02897 Peptidase_S9_N: Proly 95.7 2.9 6.2E-05 42.7 26.8 200 165-416 132-367 (414)
383 KOG2444 WD40 repeat protein [G 95.6 0.045 9.7E-07 49.1 7.1 106 291-409 70-180 (238)
384 KOG2395 Protein involved in va 95.6 0.18 4E-06 50.7 12.0 132 389-520 347-490 (644)
385 KOG2079 Vacuolar assembly/sort 95.6 0.046 1E-06 59.3 8.3 99 225-350 101-202 (1206)
386 KOG3630 Nuclear pore complex, 95.4 0.2 4.4E-06 54.9 12.5 146 165-338 109-260 (1405)
387 PF05694 SBP56: 56kDa selenium 95.4 2.6 5.7E-05 42.2 19.1 201 166-408 85-344 (461)
388 PF10647 Gmad1: Lipoprotein Lp 95.2 1.6 3.5E-05 41.2 16.8 135 212-373 25-175 (253)
389 PF05096 Glu_cyclase_2: Glutam 95.1 2.8 6.2E-05 39.2 18.2 191 281-520 46-250 (264)
390 TIGR02604 Piru_Ver_Nterm putat 94.9 1.5 3.1E-05 44.1 16.5 135 212-373 15-193 (367)
391 PF14583 Pectate_lyase22: Olig 94.9 4.5 9.8E-05 40.1 27.1 99 273-373 181-292 (386)
392 PF05694 SBP56: 56kDa selenium 94.8 4.9 0.00011 40.3 22.8 197 288-520 138-392 (461)
393 COG3204 Uncharacterized protei 94.8 1.7 3.7E-05 40.9 15.0 160 211-408 86-265 (316)
394 KOG1916 Nuclear protein, conta 94.7 0.0056 1.2E-07 64.6 -1.4 205 279-492 132-373 (1283)
395 PHA02713 hypothetical protein; 94.6 5.1 0.00011 42.7 20.6 51 290-342 351-408 (557)
396 PF14870 PSII_BNR: Photosynthe 94.5 4.8 0.0001 38.9 19.3 151 209-403 143-301 (302)
397 KOG4441 Proteins containing BT 94.5 4.9 0.00011 42.8 20.1 104 290-409 380-502 (571)
398 KOG1897 Damage-specific DNA bi 94.4 9.9 0.00021 41.8 32.3 113 165-309 496-613 (1096)
399 KOG4441 Proteins containing BT 94.4 2.7 5.8E-05 44.8 17.6 189 165-409 330-549 (571)
400 KOG3630 Nuclear pore complex, 94.3 0.63 1.4E-05 51.3 12.7 146 210-373 100-253 (1405)
401 PHA03098 kelch-like protein; P 94.2 2.6 5.6E-05 44.7 17.5 63 290-354 389-467 (534)
402 PF14870 PSII_BNR: Photosynthe 94.1 4.1 8.9E-05 39.3 16.6 146 165-348 153-301 (302)
403 PF10647 Gmad1: Lipoprotein Lp 94.0 5.4 0.00012 37.6 20.8 110 281-406 25-144 (253)
404 PF15390 DUF4613: Domain of un 93.9 1.5 3.3E-05 45.1 13.8 115 280-407 57-187 (671)
405 KOG2377 Uncharacterized conser 93.9 1.9 4.1E-05 43.0 13.8 139 167-339 32-171 (657)
406 TIGR03074 PQQ_membr_DH membran 93.8 13 0.00028 41.0 24.3 118 291-417 194-355 (764)
407 COG3204 Uncharacterized protei 93.7 6.4 0.00014 37.2 17.9 181 107-315 83-268 (316)
408 PF08728 CRT10: CRT10; InterP 93.7 1.8 3.9E-05 46.4 14.5 131 212-350 102-245 (717)
409 KOG2247 WD40 repeat-containing 93.7 0.021 4.7E-07 56.6 0.4 154 209-407 33-189 (615)
410 PF08728 CRT10: CRT10; InterP 93.7 3.7 8E-05 44.1 16.7 118 280-405 101-245 (717)
411 PF14655 RAB3GAP2_N: Rab3 GTPa 93.4 1.4 3.1E-05 44.4 12.7 95 320-416 306-408 (415)
412 PF10168 Nup88: Nuclear pore c 93.2 16 0.00034 40.1 21.8 93 211-311 85-181 (717)
413 PF10313 DUF2415: Uncharacteri 93.0 0.42 9.1E-06 30.8 5.4 31 280-310 1-34 (43)
414 KOG4499 Ca2+-binding protein R 93.0 7 0.00015 35.7 17.9 139 322-475 109-263 (310)
415 TIGR03074 PQQ_membr_DH membran 93.0 17 0.00037 40.1 22.0 113 300-415 335-486 (764)
416 PF14655 RAB3GAP2_N: Rab3 GTPa 92.4 1.8 3.9E-05 43.7 11.8 85 274-360 302-407 (415)
417 PHA02790 Kelch-like protein; P 92.4 9 0.0002 40.0 17.6 100 290-409 362-473 (480)
418 PF15390 DUF4613: Domain of un 92.2 4.6 0.0001 41.8 14.3 117 165-310 69-187 (671)
419 PF12234 Rav1p_C: RAVE protein 92.0 5.4 0.00012 42.4 15.1 110 282-406 32-156 (631)
420 KOG4499 Ca2+-binding protein R 92.0 9.7 0.00021 34.8 18.8 93 280-372 158-262 (310)
421 PF10168 Nup88: Nuclear pore c 91.7 24 0.00051 38.7 22.8 28 280-308 85-112 (717)
422 PRK13684 Ycf48-like protein; P 91.4 16 0.00034 36.1 17.7 108 280-404 215-329 (334)
423 PF12234 Rav1p_C: RAVE protein 91.3 6.5 0.00014 41.8 14.8 123 323-494 31-157 (631)
424 PF10313 DUF2415: Uncharacteri 90.7 1.1 2.4E-05 28.9 5.4 31 322-352 1-34 (43)
425 KOG2377 Uncharacterized conser 90.5 11 0.00024 37.8 14.5 120 278-410 65-189 (657)
426 PF05096 Glu_cyclase_2: Glutam 90.4 16 0.00034 34.4 20.9 160 212-415 46-212 (264)
427 TIGR02604 Piru_Ver_Nterm putat 90.1 12 0.00025 37.6 15.2 92 280-373 14-133 (367)
428 KOG1916 Nuclear protein, conta 89.6 0.34 7.3E-06 51.9 3.7 159 165-352 192-375 (1283)
429 PF12657 TFIIIC_delta: Transcr 89.2 3.3 7.1E-05 36.5 9.4 31 280-310 86-122 (173)
430 KOG1897 Damage-specific DNA bi 89.2 40 0.00087 37.4 27.8 111 281-407 776-899 (1096)
431 PF05935 Arylsulfotrans: Aryls 89.1 25 0.00054 36.7 17.1 117 285-417 153-312 (477)
432 PRK10115 protease 2; Provision 88.3 44 0.00096 36.6 26.7 111 211-350 127-254 (686)
433 PF14781 BBS2_N: Ciliary BBSom 87.8 15 0.00032 30.6 12.9 118 284-414 3-133 (136)
434 PHA03098 kelch-like protein; P 87.8 14 0.0003 39.2 14.6 63 290-354 437-514 (534)
435 PF07569 Hira: TUP1-like enhan 87.6 4.2 9E-05 37.4 9.2 66 287-353 18-97 (219)
436 PF11725 AvrE: Pathogenicity f 87.1 72 0.0016 37.8 21.3 150 88-249 360-524 (1774)
437 PF12657 TFIIIC_delta: Transcr 87.0 4.6 0.0001 35.5 8.9 37 364-407 86-122 (173)
438 COG1520 FOG: WD40-like repeat 86.5 38 0.00082 33.9 19.6 110 293-417 70-182 (370)
439 PF10214 Rrn6: RNA polymerase 86.1 62 0.0014 36.1 20.9 174 209-407 78-277 (765)
440 PRK10115 protease 2; Provision 85.9 59 0.0013 35.7 30.6 189 165-406 135-344 (686)
441 COG4257 Vgb Streptogramin lyas 85.5 33 0.00071 32.3 21.1 184 133-353 64-264 (353)
442 KOG2280 Vacuolar assembly/sort 85.4 51 0.0011 35.5 16.3 29 211-241 84-112 (829)
443 PRK13684 Ycf48-like protein; P 84.9 42 0.00092 33.1 17.4 105 280-401 173-283 (334)
444 KOG2247 WD40 repeat-containing 84.8 0.1 2.3E-06 51.9 -3.0 139 166-345 44-182 (615)
445 PF07995 GSDH: Glucose / Sorbo 84.6 23 0.00051 34.9 13.4 104 281-399 3-136 (331)
446 PF05935 Arylsulfotrans: Aryls 84.3 49 0.0011 34.5 16.2 42 324-365 273-315 (477)
447 COG4590 ABC-type uncharacteriz 84.3 20 0.00043 36.1 12.1 142 135-312 225-389 (733)
448 PLN00033 photosystem II stabil 84.1 51 0.0011 33.4 16.4 113 209-348 279-396 (398)
449 PF11715 Nup160: Nucleoporin N 84.0 5.4 0.00012 42.4 9.3 72 289-360 156-257 (547)
450 PF13449 Phytase-like: Esteras 83.5 48 0.001 32.6 19.6 122 209-341 18-166 (326)
451 PF11715 Nup160: Nucleoporin N 83.5 18 0.00038 38.6 12.9 38 280-317 215-256 (547)
452 PF07569 Hira: TUP1-like enhan 83.2 10 0.00022 34.9 9.5 70 329-412 18-101 (219)
453 TIGR02276 beta_rpt_yvtn 40-res 82.5 7.2 0.00016 24.5 6.1 31 331-361 1-32 (42)
454 TIGR03118 PEPCTERM_chp_1 conse 81.6 51 0.0011 31.6 19.4 70 339-416 218-289 (336)
455 COG1520 FOG: WD40-like repeat 81.5 61 0.0013 32.4 22.1 112 290-415 111-226 (370)
456 PF12768 Rax2: Cortical protei 81.5 38 0.00082 32.4 12.8 52 178-242 16-73 (281)
457 COG3823 Glutamine cyclotransfe 80.8 42 0.00092 30.3 11.7 83 290-373 139-238 (262)
458 KOG2280 Vacuolar assembly/sort 80.5 90 0.002 33.8 19.6 53 280-332 217-270 (829)
459 PF14761 HPS3_N: Hermansky-Pud 80.3 46 0.00099 30.2 12.4 56 292-348 29-92 (215)
460 PLN00033 photosystem II stabil 80.1 71 0.0015 32.3 17.1 106 280-403 239-353 (398)
461 PF07676 PD40: WD40-like Beta 79.6 8.7 0.00019 23.9 5.6 29 320-348 7-38 (39)
462 KOG4460 Nuclear pore complex, 79.3 50 0.0011 34.0 13.1 106 135-242 55-199 (741)
463 KOG3616 Selective LIM binding 79.0 4.5 9.9E-05 42.8 6.1 77 363-500 14-90 (1636)
464 COG4590 ABC-type uncharacteriz 78.3 13 0.00029 37.2 8.7 160 165-356 229-391 (733)
465 PF11635 Med16: Mediator compl 77.6 1.2E+02 0.0027 33.7 19.3 130 211-346 181-345 (753)
466 PHA02790 Kelch-like protein; P 76.8 42 0.00091 35.1 12.8 59 290-353 407-472 (480)
467 COG3823 Glutamine cyclotransfe 76.3 59 0.0013 29.4 14.3 184 290-521 55-249 (262)
468 PF03022 MRJP: Major royal jel 75.8 78 0.0017 30.5 20.2 207 135-373 5-243 (287)
469 COG5167 VID27 Protein involved 75.4 62 0.0013 33.3 12.5 122 269-407 500-633 (776)
470 KOG1900 Nuclear pore complex, 75.2 33 0.00071 39.3 11.6 158 298-494 96-273 (1311)
471 COG5167 VID27 Protein involved 74.3 31 0.00067 35.3 10.1 129 390-520 482-622 (776)
472 KOG1896 mRNA cleavage and poly 73.7 1.8E+02 0.0038 33.5 16.7 140 168-350 1046-1212(1366)
473 TIGR02276 beta_rpt_yvtn 40-res 73.4 17 0.00038 22.7 5.8 30 389-418 5-34 (42)
474 PF07676 PD40: WD40-like Beta 72.5 11 0.00024 23.4 4.5 30 209-238 7-38 (39)
475 PF10214 Rrn6: RNA polymerase 71.8 1.7E+02 0.0037 32.6 24.5 130 209-352 144-277 (765)
476 PF14761 HPS3_N: Hermansky-Pud 71.7 80 0.0017 28.7 15.6 125 169-311 29-165 (215)
477 PF12768 Rax2: Cortical protei 70.6 63 0.0014 30.9 11.1 72 301-373 16-98 (281)
478 PF02333 Phytase: Phytase; In 68.8 1.3E+02 0.0029 30.1 21.2 121 212-352 157-291 (381)
479 KOG4460 Nuclear pore complex, 68.5 65 0.0014 33.3 10.9 77 280-356 104-203 (741)
480 TIGR03606 non_repeat_PQQ dehyd 68.1 1.5E+02 0.0033 30.5 15.5 33 363-408 29-61 (454)
481 PF14727 PHTB1_N: PTHB1 N-term 68.0 1.5E+02 0.0032 30.3 25.7 158 166-350 35-203 (418)
482 PF14781 BBS2_N: Ciliary BBSom 67.7 72 0.0016 26.6 13.6 122 214-358 2-132 (136)
483 TIGR03032 conserved hypothetic 66.8 76 0.0017 30.7 10.6 81 290-373 212-314 (335)
484 TIGR03606 non_repeat_PQQ dehyd 66.5 1.6E+02 0.0036 30.3 15.6 55 279-333 29-90 (454)
485 TIGR03118 PEPCTERM_chp_1 conse 66.3 1.3E+02 0.0028 29.1 22.7 78 295-373 216-307 (336)
486 PLN02153 epithiospecifier prot 65.8 1.4E+02 0.0031 29.3 20.1 62 290-354 137-228 (341)
487 KOG1983 Tomosyn and related SN 63.8 1.1E+02 0.0023 35.3 13.0 22 389-410 247-268 (993)
488 TIGR03547 muta_rot_YjhT mutatr 63.2 1.2E+02 0.0026 29.9 12.2 11 178-188 168-178 (346)
489 KOG1900 Nuclear pore complex, 62.8 1E+02 0.0022 35.6 12.1 34 277-310 240-273 (1311)
490 PF03088 Str_synth: Strictosid 62.4 69 0.0015 24.6 7.9 41 298-339 34-74 (89)
491 PLN02193 nitrile-specifier pro 61.8 2.1E+02 0.0045 29.8 15.0 64 290-354 328-413 (470)
492 PF14269 Arylsulfotran_2: Aryl 61.7 1.6E+02 0.0034 28.5 13.8 71 281-351 145-220 (299)
493 smart00564 PQQ beta-propeller 61.7 20 0.00043 21.1 4.0 25 293-317 8-32 (33)
494 PF02333 Phytase: Phytase; In 61.2 1.8E+02 0.004 29.1 23.4 125 280-414 156-299 (381)
495 PLN02193 nitrile-specifier pro 60.7 2.1E+02 0.0047 29.7 20.3 64 290-355 278-355 (470)
496 PF12341 DUF3639: Protein of u 60.4 24 0.00052 20.3 3.7 26 466-491 2-27 (27)
497 PF08801 Nucleoporin_N: Nup133 60.2 2E+02 0.0044 29.3 17.0 29 466-494 190-220 (422)
498 PF14727 PHTB1_N: PTHB1 N-term 59.3 2.1E+02 0.0046 29.2 22.3 149 221-406 35-204 (418)
499 TIGR03548 mutarot_permut cycli 57.3 1.9E+02 0.0042 28.1 19.5 64 290-354 123-197 (323)
500 KOG3522 Predicted guanine nucl 57.3 48 0.0011 36.1 8.2 152 166-353 545-699 (925)
No 1
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=100.00 E-value=8.9e-53 Score=400.57 Aligned_cols=475 Identities=50% Similarity=0.835 Sum_probs=378.4
Q ss_pred CccCCCCCcccCCCC----CCCCCcCccceeecCcceEEEEEeecCCCCccccccCceeeEEEeecccCCCCCCCCCCCC
Q 009715 1 MINTANGMISQSSSS----ANAQSPGLKTYFKTPEGRYKLHYEKTYPSGLLHYAHGKTVTQATLAHLKEKPAPSTPTAPP 76 (528)
Q Consensus 1 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (528)
||+.+++|+++++++ ++||+++.++||+||||+|+|++|++|+.++++|++++.++++++++++.+|.+.++..+.
T Consensus 3 ~~~~s~~~~~~~~~~Ss~qsspqs~g~~l~~~tP~~~~~l~~~~t~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ts 82 (636)
T KOG2394|consen 3 MMNLSNGMISGPSSSSSSQSSPQSPGSKLYFKTPEGKYKLHYEKTHQSGLLHYPHGKTVTQVTLAQLGVHPGGATPAGTS 82 (636)
T ss_pred eecCCCccccCCccCcccccCCCCCcccccCCCcchheeeeeecccccccccccCCceeeeccccccCCCCCCCCCcccc
Confidence 788999999888755 6899999999999999999999999999999999999999999999999999999988777
Q ss_pred CCcccCcchhhhhhhhhcCCCCCceeeccCCCCCCCccccCCcccCCcccCCCCCCcceeeeCCCccEEEEeCCCcEEEE
Q 009715 77 SSFSASSGVVRSAAAKLLGTGNGSRTLGFGGGNGGSKSISGSSRIGSLGASSSSTSMTNTNFDGKGTYIIFNVGDAIFIS 156 (528)
Q Consensus 77 ~~~~~~~g~~~~~~~~~~~~~~g~~~~sf~gh~~~v~~v~~s~~~~~~~~s~s~~s~~~~~~~~~g~~~~~~~~~~i~v~ 156 (528)
.+.+.++| -+++.++.-+...+.++..+.|.++.-.+..- ++.......+..|+.+|||.++.+++|
T Consensus 83 i~~~~s~g-~~s~~n~~~~s~~~~~~~~~~g~~~~~~s~~~------------sg~~~~~~~~~~gd~lcFnvg~~lyv~ 149 (636)
T KOG2394|consen 83 ISETGSSG-FRSALNHSSGSGPNNRALAPVGSNGAPHSNAN------------SGIVTNTNQSGKGDRLCFNVGRELYVY 149 (636)
T ss_pred cccccccc-chhhccccccCCCCcceeccccCCCccccccc------------ccceeeccccCCCCEEEEecCCeEEEE
Confidence 77788888 77888888888888888888888776522221 124455666789999999999999999
Q ss_pred eCCCCCCC------------------------CCCCCeEEEEecCCcEEEEEccccccccccceeeeeeeccCCcccCCc
Q 009715 157 DLNSQDKD------------------------AKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSR 212 (528)
Q Consensus 157 ~~~~~~~~------------------------~~~~~~l~~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 212 (528)
+++..... .+.+..|++|...|+|++.|...+ .. ...|+++....+..
T Consensus 150 ~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~~~--~~------sklfne~r~i~kts 221 (636)
T KOG2394|consen 150 SYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPINF--EV------SKLFNEERLINKSS 221 (636)
T ss_pred EccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecchhh--HH------HHhhhhcccccccc
Confidence 99953221 678889999999999999987651 11 12366666678899
Q ss_pred eeEEEEeeCCCcEEEEEeCCceEEEEEcCC-CCCCCCccccccccceeEEeccCCCCC-CCeEEEeecCCCeEEEEECCC
Q 009715 213 CTSVTWVPGGDGAFVVGHADGNLYVYEKSK-DGAGDSSFPVIKDQTQFSVAHPRYSKS-NPIARWHICQGSINSIAFSTD 290 (528)
Q Consensus 213 v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~h~~~v~~l~~spd 290 (528)
|+|++|-|.+++.|+++..+|.+++||... .+.....++.+++...|.+........ +|+..|+..++.|+.++|+||
T Consensus 222 vT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~D 301 (636)
T KOG2394|consen 222 VTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPD 301 (636)
T ss_pred eEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCC
Confidence 999999999998999999999999999754 234455677778888888877766444 999999999999999999999
Q ss_pred CCEEEEEeCCCcEEEEecCCceEEeeecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCeEEEE
Q 009715 291 GTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVA 370 (528)
Q Consensus 291 g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~v~ 370 (528)
|++||+.+.||.+||||+.+.+++..++.+.+..+||+|||||+||++|++|..|.||.+..++.+++-++|.+||+.|+
T Consensus 302 G~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~Va 381 (636)
T KOG2394|consen 302 GKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVA 381 (636)
T ss_pred CceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCC------------------------CCCCCccc-----------eeEEEEEEeCCCeEEEEEccCCeEEEE--
Q 009715 371 FDSYWSQP------------------------NSDGTAET-----------VMYRFGSVGQDTRLLLWDLEMDEIVVP-- 413 (528)
Q Consensus 371 f~p~~~~~------------------------~~dg~~~~-----------~~~~l~s~s~D~~i~lwd~~~~~~~~~-- 413 (528)
|+||--.. ++++..+. ..++|.++++|.+++|||+....+...
T Consensus 382 FDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~L~~~~p 461 (636)
T KOG2394|consen 382 FDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDVLVPHPP 461 (636)
T ss_pred ecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEEEecchhhcccCCc
Confidence 99872000 11222222 678999999999999999987765441
Q ss_pred ---eecCCCCCCCe----------------------------------------------------ec-------CCCC-
Q 009715 414 ---LRRGPLGGSPT----------------------------------------------------FS-------TGSQ- 430 (528)
Q Consensus 414 ---~~~~~~~~~~~----------------------------------------------------~s-------~~~~- 430 (528)
++..+.....+ ++ .++.
T Consensus 462 ~~~~R~~~n~~~pats~~a~s~a~gg~~~pg~~~~P~~~~r~~slp~s~i~~~ag~~~~~~~~~~~~s~~fs~lt~~~r~ 541 (636)
T KOG2394|consen 462 LYRLRRHPNNSSPATSPGAQSSAHGGEIGPGNTSVPGPCTRSASLPSSAISNRAGTPSVAGDGATASSSGFSFLTSACRK 541 (636)
T ss_pred hhhhhcCCCCCCCccCcccchhcccCcccCCCccCCCCcccCCCCccccccccCCCCCccccccccccccceeechhHhc
Confidence 11111100000 00 0000
Q ss_pred C------ccCCceeeeec---------------------CCCCceeeecCCCCceEEeecCCCCeEEEEEeCCeEEEEEC
Q 009715 431 S------AHWDNVCPVGT---------------------LQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQESVLTVCR 483 (528)
Q Consensus 431 ~------~~~d~~~~~g~---------------------~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~~s~d~l~t~s~ 483 (528)
. .+-...+..|. ...++++.|++..+|+...+...+.++.+.|..|.|+|+|.
T Consensus 542 ~~~~e~~hhs~Ghi~~~~s~~~k~~~~~~s~~dp~~~lgT~~cPri~~vpllepl~ckkiaherlTvl~F~edcivtacq 621 (636)
T KOG2394|consen 542 TRGNEKTHHSEGHISIWQSPNKKLNISTISSTDPAKTLGTPLCPRIRDVPLLEPLVCKKIAHERLTVLIFREDCIVTACQ 621 (636)
T ss_pred ccccccccccccccccccCCccccCCcccccCChhHhcCCccCCcccccccccccccchhchhheeeeeehhhhhhhhcc
Confidence 0 00001111111 12244667777778888777777889999999999999999
Q ss_pred CCeEEEEeCCCCc
Q 009715 484 EGHIKIWMRPGVA 496 (528)
Q Consensus 484 Dg~i~iW~~~~~~ 496 (528)
+|.|+.|-+++..
T Consensus 622 eg~ictw~rpg~~ 634 (636)
T KOG2394|consen 622 EGFICTWGRPGKA 634 (636)
T ss_pred cceEEecCCCCCC
Confidence 9999999998754
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.7e-44 Score=329.48 Aligned_cols=328 Identities=18% Similarity=0.284 Sum_probs=270.3
Q ss_pred eccCCCCCCCccccCCcccCCcccCCCCCCcceeeeCCCccEEEEeCCCcEEEEeCCCCCCCCCCCCeEEEEecCCcEEE
Q 009715 103 LGFGGGNGGSKSISGSSRIGSLGASSSSTSMTNTNFDGKGTYIIFNVGDAIFISDLNSQDKDAKDGHDLLIGLNSGDVYS 182 (528)
Q Consensus 103 ~sf~gh~~~v~~v~~s~~~~~~~~s~s~~s~~~~~~~~~g~~~~~~~~~~i~v~~~~~~~~~~~~~~~l~~g~~~G~v~i 182 (528)
.+|.||.+.|-|+.|+| ++..|++|+.|-++++
T Consensus 109 sS~~GH~e~Vl~~~fsp-----------------------------------------------~g~~l~tGsGD~TvR~ 141 (480)
T KOG0271|consen 109 SSIAGHGEAVLSVQFSP-----------------------------------------------TGSRLVTGSGDTTVRL 141 (480)
T ss_pred cccCCCCCcEEEEEecC-----------------------------------------------CCceEEecCCCceEEe
Confidence 45789999999999977 3445667777778999
Q ss_pred EEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEe
Q 009715 183 VSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVA 262 (528)
Q Consensus 183 wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~ 262 (528)
||+.++. ..+. -..|...|.|++|+|||+ .||+|+.||+|++||..+++.
T Consensus 142 WD~~TeT----------p~~t--~KgH~~WVlcvawsPDgk-~iASG~~dg~I~lwdpktg~~----------------- 191 (480)
T KOG0271|consen 142 WDLDTET----------PLFT--CKGHKNWVLCVAWSPDGK-KIASGSKDGSIRLWDPKTGQQ----------------- 191 (480)
T ss_pred eccCCCC----------ccee--ecCCccEEEEEEECCCcc-hhhccccCCeEEEecCCCCCc-----------------
Confidence 9987732 1111 123999999999999999 999999999999999887432
Q ss_pred ccCCCCCCCeEEEeecCCCeEEEEECC-----CCCEEEEEeCCCcEEEEecCCceEEeeecccCCCeEEEEEcCCCCEEE
Q 009715 263 HPRYSKSNPIARWHICQGSINSIAFST-----DGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYIL 337 (528)
Q Consensus 263 ~~~~~~~~~~~~~~~h~~~v~~l~~sp-----dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~ 337 (528)
..+.+.+|...|++++|.| ..++||+++.||.++|||+..++++..+.+|..+|+|+.|--+| +|+
T Consensus 192 --------~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liy 262 (480)
T KOG0271|consen 192 --------IGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIY 262 (480)
T ss_pred --------ccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-eEE
Confidence 3445677889999999986 46799999999999999999999999999999999999998665 899
Q ss_pred EEeCCCcEEEEECCCCeEEEEeecCCCCeEEEEEecC-------CCC----CCCCCC------------ccceeEEEEEE
Q 009715 338 TGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSY-------WSQ----PNSDGT------------AETVMYRFGSV 394 (528)
Q Consensus 338 sg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~v~f~p~-------~~~----~~~dg~------------~~~~~~~l~s~ 394 (528)
+|+.|++|++|+...|++.+.+++|..+|+.++.+.. +.+ |++..+ .+....+|++|
T Consensus 263 SgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSg 342 (480)
T KOG0271|consen 263 SGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSG 342 (480)
T ss_pred ecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEe
Confidence 9999999999999999999999999999999988721 000 000000 00001479999
Q ss_pred eCCCeEEEEEccC-CeEEEEeec-CCCCCCCeecCCCCCccCCceeeeecCCCCceeeecCCCCceEEeecCCCCeEEEE
Q 009715 395 GQDTRLLLWDLEM-DEIVVPLRR-GPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLI 472 (528)
Q Consensus 395 s~D~~i~lwd~~~-~~~~~~~~~-~~~~~~~~~s~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~ 472 (528)
++|.++.+|+-.. .+++..+.. ...+..+.|+|++ ..++.+++|..+++|+.++++.+..+++|-+.|+.++
T Consensus 343 sDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~------r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqva 416 (480)
T KOG0271|consen 343 SDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDG------RYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVA 416 (480)
T ss_pred cCCceEEEecccccccchhhhhchhhheeeEEECCCc------cEEEEeecccceeeeeCCCcchhhhhhhccceeEEEE
Confidence 9999999999654 345555543 3467889999998 7889999999999999999999999999999999999
Q ss_pred EeCC--eEEEEECCCeEEEEeCCCCcc--ccCCCccce--EEEccCCceEEEeeee
Q 009715 473 FTQE--SVLTVCREGHIKIWMRPGVAE--SQSSSSETV--LSTSSKDKPLLSSKVV 522 (528)
Q Consensus 473 ~s~d--~l~t~s~Dg~i~iW~~~~~~~--~~~~~~~~v--l~~spd~~~l~s~~~~ 522 (528)
|+.| .|++|+.|.++++|++.+++. ...+|.+.| +.++|||+.+++|..+
T Consensus 417 wsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkd 472 (480)
T KOG0271|consen 417 WSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKD 472 (480)
T ss_pred eccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCc
Confidence 9998 499999999999999998874 456799999 6669999999999766
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1e-41 Score=316.62 Aligned_cols=271 Identities=22% Similarity=0.333 Sum_probs=245.4
Q ss_pred CCCCCeEEEEecCCcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCC-CcEEEEEeCCceEEEEEcCCC
Q 009715 165 AKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGG-DGAFVVGHADGNLYVYEKSKD 243 (528)
Q Consensus 165 ~~~~~~l~~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g-~~~l~tg~~dg~v~vwd~~~~ 243 (528)
+.++..|++|+-+|.+++|+..+- ........|...|.++.|+|.. ..-+++|+.||+|++|+++.
T Consensus 184 S~ds~~laT~swsG~~kvW~~~~~------------~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~- 250 (459)
T KOG0272|consen 184 SRDSKHLATGSWSGLVKVWSVPQC------------NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQ- 250 (459)
T ss_pred ecCCCeEEEeecCCceeEeecCCc------------ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCC-
Confidence 678999999999999999998761 1112233599999999999983 43799999999999999985
Q ss_pred CCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCCCCEEEEEeCCCcEEEEecCCceEEeeecccCCC
Q 009715 244 GAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGA 323 (528)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~ 323 (528)
..++..+.+|...|..++|+|+|++|++++.|.+-++||+.+++.+....+|...
T Consensus 251 -------------------------e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~ 305 (459)
T KOG0272|consen 251 -------------------------ETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKG 305 (459)
T ss_pred -------------------------CcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccc
Confidence 3577788899999999999999999999999999999999999999999999999
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEE
Q 009715 324 LLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLW 403 (528)
Q Consensus 324 v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lw 403 (528)
|.+|+|+|||.++++|+.|..-+|||+++++++..+.+|...|.+|+|+| +| +.|+||+.|++++||
T Consensus 306 v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsP-------NG------y~lATgs~Dnt~kVW 372 (459)
T KOG0272|consen 306 VFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSP-------NG------YHLATGSSDNTCKVW 372 (459)
T ss_pred cceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECC-------Cc------eEEeecCCCCcEEEe
Confidence 99999999999999999999999999999999999999999999999999 99 999999999999999
Q ss_pred EccCCeEEEEeecC-CCCCCCeecCCCCCccCCceeeeecCCCCceeeecCCCCceEEeecCCCCeEEEEEeCCe--EEE
Q 009715 404 DLEMDEIVVPLRRG-PLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLT 480 (528)
Q Consensus 404 d~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~~s~d~--l~t 480 (528)
|++..+.+..+..+ ..+..+.|++.. ...+.+.+.|..+++|..+.+.++..+.||++.|.++..++|+ |+|
T Consensus 373 DLR~r~~ly~ipAH~nlVS~Vk~~p~~-----g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t 447 (459)
T KOG0272|consen 373 DLRMRSELYTIPAHSNLVSQVKYSPQE-----GYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIAT 447 (459)
T ss_pred eecccccceecccccchhhheEecccC-----CeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEE
Confidence 99999998888654 457788888733 2566888899999999999999999999999999999999986 999
Q ss_pred EECCCeEEEEe
Q 009715 481 VCREGHIKIWM 491 (528)
Q Consensus 481 ~s~Dg~i~iW~ 491 (528)
++.|+++|+|.
T Consensus 448 ~s~DRT~KLW~ 458 (459)
T KOG0272|consen 448 SSFDRTIKLWR 458 (459)
T ss_pred eccCceeeecc
Confidence 99999999995
No 4
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6e-40 Score=301.02 Aligned_cols=295 Identities=19% Similarity=0.219 Sum_probs=248.3
Q ss_pred hhhhhhhhcCCCCCceeeccCCCCCCCccccCCcccCCcccCCCCCCcceeeeCCCccEEEEeCCCc-EEEEeCCCCCCC
Q 009715 86 VRSAAAKLLGTGNGSRTLGFGGGNGGSKSISGSSRIGSLGASSSSTSMTNTNFDGKGTYIIFNVGDA-IFISDLNSQDKD 164 (528)
Q Consensus 86 ~~~~~~~~~~~~~g~~~~sf~gh~~~v~~v~~s~~~~~~~~s~s~~s~~~~~~~~~g~~~~~~~~~~-i~v~~~~~~~~~ 164 (528)
+...+.|+|+..+..-....+||..-|.||+++| ++..+||++. +|.+++|+.... .+...+..+.+-
T Consensus 134 sGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsP-Dgk~iASG~~----------dg~I~lwdpktg~~~g~~l~gH~K~ 202 (480)
T KOG0271|consen 134 SGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSP-DGKKIASGSK----------DGSIRLWDPKTGQQIGRALRGHKKW 202 (480)
T ss_pred CCCceEEeeccCCCCcceeecCCccEEEEEEECC-Ccchhhcccc----------CCeEEEecCCCCCcccccccCcccc
Confidence 4477999999999999999999999999999999 9999999996 899999996543 233344433332
Q ss_pred -----------CCCCCeEEEEecCCcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeCCc
Q 009715 165 -----------AKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADG 233 (528)
Q Consensus 165 -----------~~~~~~l~~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg 233 (528)
.+..+.|+.++.||.|+|||+... .......+|+.+|+|+.|--+| ++++|+.|+
T Consensus 203 It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~------------~~~~~lsgHT~~VTCvrwGG~g--liySgS~Dr 268 (480)
T KOG0271|consen 203 ITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLG------------TCVRTLSGHTASVTCVRWGGEG--LIYSGSQDR 268 (480)
T ss_pred eeEEeecccccCCCccceecccCCCCEEEEEccCc------------eEEEEeccCccceEEEEEcCCc--eEEecCCCc
Confidence 677889999999999999998751 1111223499999999997555 899999999
Q ss_pred eEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEEC-----------CC------------
Q 009715 234 NLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFS-----------TD------------ 290 (528)
Q Consensus 234 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s-----------pd------------ 290 (528)
+|++|+... + ..++.+++|...|+.++.+ |.
T Consensus 269 tIkvw~a~d-G-------------------------~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~ 322 (480)
T KOG0271|consen 269 TIKVWRALD-G-------------------------KLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQK 322 (480)
T ss_pred eEEEEEccc-h-------------------------hHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHH
Confidence 999999865 3 2445566666777776665 21
Q ss_pred -------------CCEEEEEeCCCcEEEEecCC-ceEEeeecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEE
Q 009715 291 -------------GTYLATVGRDGYLRVFDYSK-EQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVV 356 (528)
Q Consensus 291 -------------g~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~~~ 356 (528)
+..|++|++|.++.+|+... .+++..+.+|...|+.+.||||++++|+++-|..|++||.++|+.+
T Consensus 323 ~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~l 402 (480)
T KOG0271|consen 323 KALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFL 402 (480)
T ss_pred HHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchh
Confidence 23599999999999999764 4578888999999999999999999999999999999999999999
Q ss_pred EEeecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEEEeecCCCCCCCeecCCCCCccCCc
Q 009715 357 AWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDN 436 (528)
Q Consensus 357 ~~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~d~ 436 (528)
.+|+||-..|..++|+. |. ++|++|+.|.++++||+++.+....
T Consensus 403 asfRGHv~~VYqvawsa-------Ds------RLlVS~SkDsTLKvw~V~tkKl~~D----------------------- 446 (480)
T KOG0271|consen 403 ASFRGHVAAVYQVAWSA-------DS------RLLVSGSKDSTLKVWDVRTKKLKQD----------------------- 446 (480)
T ss_pred hhhhhccceeEEEEecc-------Cc------cEEEEcCCCceEEEEEeeeeeeccc-----------------------
Confidence 99999999999999999 88 8999999999999999998876543
Q ss_pred eeeeecCCCCceeeecCCCCceEEeecCCCCeEEEEEeCCe--EEEEECCCeEEEEe
Q 009715 437 VCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWM 491 (528)
Q Consensus 437 ~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~~s~d~--l~t~s~Dg~i~iW~ 491 (528)
+.+|.+.|.++.|+||+ +++++.|..+++|.
T Consensus 447 ------------------------LpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 447 ------------------------LPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred ------------------------CCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 34699999999999996 99999999999995
No 5
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=9.4e-38 Score=277.56 Aligned_cols=273 Identities=19% Similarity=0.212 Sum_probs=237.4
Q ss_pred CCCCeEEEEecCCcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCC
Q 009715 166 KDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGA 245 (528)
Q Consensus 166 ~~~~~l~~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~ 245 (528)
+|.+.|+.+++||.+.|||.-+..+. +. .......|..++|+|.|+ ++|+|+-|....||++.....
T Consensus 65 ~Dsr~ivSaSqDGklIvWDs~TtnK~---------ha---ipl~s~WVMtCA~sPSg~-~VAcGGLdN~Csiy~ls~~d~ 131 (343)
T KOG0286|consen 65 TDSRRIVSASQDGKLIVWDSFTTNKV---------HA---IPLPSSWVMTCAYSPSGN-FVACGGLDNKCSIYPLSTRDA 131 (343)
T ss_pred CCcCeEEeeccCCeEEEEEcccccce---------eE---EecCceeEEEEEECCCCC-eEEecCcCceeEEEecccccc
Confidence 46677778888888888887652211 00 011456899999999999 999999999999999985211
Q ss_pred CCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCCCCEEEEEeCCCcEEEEecCCceEEeeecccCCCeE
Q 009715 246 GDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALL 325 (528)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~ 325 (528)
. ......+.+.+|++.+.|+.|-+| ..|++++.|.++.+||+++++.+..+.+|.+.|.
T Consensus 132 ~--------------------g~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~ 190 (343)
T KOG0286|consen 132 E--------------------GNVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIETGQQTQVFHGHTGDVM 190 (343)
T ss_pred c--------------------ccceeeeeecCccceeEEEEEcCC-CceEecCCCceEEEEEcccceEEEEecCCcccEE
Confidence 1 112345678899999999999885 4699999999999999999999999999999999
Q ss_pred EEEEcC-CCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEE
Q 009715 326 CCAWSM-DGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWD 404 (528)
Q Consensus 326 ~l~~sp-~g~~l~sg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd 404 (528)
+++++| +++.+++|+.|+..+|||++.+.++++|.+|++.|++|.|.| +| .-|++|++|+++++||
T Consensus 191 slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP-------~G------~afatGSDD~tcRlyD 257 (343)
T KOG0286|consen 191 SLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFP-------SG------DAFATGSDDATCRLYD 257 (343)
T ss_pred EEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEcc-------CC------CeeeecCCCceeEEEe
Confidence 999999 999999999999999999999999999999999999999999 99 8999999999999999
Q ss_pred ccCCeEEEEeecC---CCCCCCeecCCCCCccCCceeeeecCCCCceeeecCCCCceEEeecCCCCeEEEEEeCCe--EE
Q 009715 405 LEMDEIVVPLRRG---PLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VL 479 (528)
Q Consensus 405 ~~~~~~~~~~~~~---~~~~~~~~s~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~~s~d~--l~ 479 (528)
++..+.+..+.+. .++.+++|+..| ..+..|..+....+||.-+.+.+..+.+|+..|++|..+||+ |+
T Consensus 258 lRaD~~~a~ys~~~~~~gitSv~FS~SG------RlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~ 331 (343)
T KOG0286|consen 258 LRADQELAVYSHDSIICGITSVAFSKSG------RLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVA 331 (343)
T ss_pred ecCCcEEeeeccCcccCCceeEEEcccc------cEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEE
Confidence 9999999888865 356778898887 566778889999999999999999999999999999999997 89
Q ss_pred EEECCCeEEEEe
Q 009715 480 TVCREGHIKIWM 491 (528)
Q Consensus 480 t~s~Dg~i~iW~ 491 (528)
|++.|.+||||.
T Consensus 332 TgSWDs~lriW~ 343 (343)
T KOG0286|consen 332 TGSWDSTLRIWA 343 (343)
T ss_pred ecchhHheeecC
Confidence 999999999994
No 6
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=9.1e-37 Score=301.71 Aligned_cols=381 Identities=19% Similarity=0.229 Sum_probs=298.8
Q ss_pred hhhhhhcCCCCCce--------eeccCCCCCCCccccCCcccCCcccCCCCCCcceeeeCCCccEEEE--eCCCcEEEEe
Q 009715 88 SAAAKLLGTGNGSR--------TLGFGGGNGGSKSISGSSRIGSLGASSSSTSMTNTNFDGKGTYIIF--NVGDAIFISD 157 (528)
Q Consensus 88 ~~~~~~~~~~~g~~--------~~sf~gh~~~v~~v~~s~~~~~~~~s~s~~s~~~~~~~~~g~~~~~--~~~~~i~v~~ 157 (528)
.--.++|.+....+ -+.|.||.+.+.++.++. +..++++++. |-..++| +..+++..+-
T Consensus 116 gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~-DSr~l~~gsr----------D~s~rl~~v~~~k~~~~~~ 184 (893)
T KOG0291|consen 116 GNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSD-DSRLLVTGSR----------DLSARLFGVDGNKNLFTYA 184 (893)
T ss_pred cceeEEEecCcchhcccCcceEeeeecCCccceeEEEecc-CCceEEeccc----------cceEEEEEeccccccceEe
Confidence 34566777665444 477899999999999998 7777777775 4444444 3344556666
Q ss_pred CCCCCCC------CCCCCeEEEEecCCcEEEEEcccccccc------------------ccceeeeeeec---cCCc-cc
Q 009715 158 LNSQDKD------AKDGHDLLIGLNSGDVYSVSLRQQLQDV------------------GKKLVGAHHYN---KDGS-VN 209 (528)
Q Consensus 158 ~~~~~~~------~~~~~~l~~g~~~G~v~iwd~~~~~~~~------------------~~~~~~~~~~~---~~~~-~h 209 (528)
+..+.-. ..+...|++-+.||.+.+|......... ++.-.....+. +.+. ..
T Consensus 185 l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~ 264 (893)
T KOG0291|consen 185 LNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQN 264 (893)
T ss_pred ccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeeccc
Confidence 6655433 6677889999999999999876211000 00000000000 0010 12
Q ss_pred CCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECC
Q 009715 210 NSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST 289 (528)
Q Consensus 210 ~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp 289 (528)
...|+|.+|++.-. +||+|-..|...+|++.. .+.++.+...+..|..++|+.
T Consensus 265 ~~kvtaa~fH~~t~-~lvvgFssG~f~LyelP~--------------------------f~lih~LSis~~~I~t~~~N~ 317 (893)
T KOG0291|consen 265 SSKVTAAAFHKGTN-LLVVGFSSGEFGLYELPD--------------------------FNLIHSLSISDQKILTVSFNS 317 (893)
T ss_pred ccceeeeeccCCce-EEEEEecCCeeEEEecCC--------------------------ceEEEEeecccceeeEEEecc
Confidence 37899999999888 999999999999999874 456666777778999999999
Q ss_pred CCCEEEEEeC-CCcEEEEecCCceEEeeecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCeEE
Q 009715 290 DGTYLATVGR-DGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSG 368 (528)
Q Consensus 290 dg~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~ 368 (528)
.|.+||.|+. -|++.||+..+...+....+|...+.+++++|||+++|+|++||.|+|||..++-|+.++..|.+.|+.
T Consensus 318 tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~ 397 (893)
T KOG0291|consen 318 TGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTA 397 (893)
T ss_pred cCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEE
Confidence 9999999875 489999999999999889999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEEEeecCCCCCCCeecCC--CCCccCCceeeeecCC-C
Q 009715 369 VAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTG--SQSAHWDNVCPVGTLQ-P 445 (528)
Q Consensus 369 v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~s~~--~~~~~~d~~~~~g~~~-~ 445 (528)
+.|+. +| +.+++.+.||+|+.||+...+..+++..+.+....+++.+ | ..+-.|..+ -
T Consensus 398 v~f~~-------~g------~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sG------elV~AG~~d~F 458 (893)
T KOG0291|consen 398 VQFTA-------RG------NVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSG------ELVCAGAQDSF 458 (893)
T ss_pred EEEEe-------cC------CEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCC------CEEEeeccceE
Confidence 99999 88 7999999999999999999999999987665544333333 4 233344443 4
Q ss_pred CceeeecCCCCceEEeecCCCCeEEEEEeCCe--EEEEECCCeEEEEeCCCC--ccccCCCccce--EEEccCCceEEEe
Q 009715 446 APSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWMRPGV--AESQSSSSETV--LSTSSKDKPLLSS 519 (528)
Q Consensus 446 ~~~~~d~~~~~~~~~~~~h~~~V~~l~~s~d~--l~t~s~Dg~i~iW~~~~~--~~~~~~~~~~v--l~~spd~~~l~s~ 519 (528)
.+.+|++++++.+..+.||+++|.++.|+|++ |+++|.|.+||+||+-.. ..+.......+ ++|+|||+.|+++
T Consensus 459 ~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVa 538 (893)
T KOG0291|consen 459 EIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVA 538 (893)
T ss_pred EEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEE
Confidence 68999999999999999999999999999975 999999999999998655 33344444444 8889999999999
Q ss_pred eeeccc
Q 009715 520 KVVTSS 525 (528)
Q Consensus 520 ~~~gs~ 525 (528)
+.+|.+
T Consensus 539 TldgqI 544 (893)
T KOG0291|consen 539 TLDGQI 544 (893)
T ss_pred EecceE
Confidence 998643
No 7
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=7.7e-39 Score=297.50 Aligned_cols=271 Identities=19% Similarity=0.262 Sum_probs=250.5
Q ss_pred ccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEE
Q 009715 208 VNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAF 287 (528)
Q Consensus 208 ~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 287 (528)
+...+|..+.|+.+++ .|+||+.+|.++||+... .+.+..+.+|...|.++.|
T Consensus 173 gd~rPis~~~fS~ds~-~laT~swsG~~kvW~~~~--------------------------~~~~~~l~gH~~~v~~~~f 225 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSK-HLATGSWSGLVKVWSVPQ--------------------------CNLLQTLRGHTSRVGAAVF 225 (459)
T ss_pred cCCCcceeeEeecCCC-eEEEeecCCceeEeecCC--------------------------cceeEEEeccccceeeEEE
Confidence 3677999999999999 999999999999999875 4678899999999999999
Q ss_pred CCC--CCEEEEEeCCCcEEEEecCCceEEeeecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCC
Q 009715 288 STD--GTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSW 365 (528)
Q Consensus 288 spd--g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~~~~~~~~h~~~ 365 (528)
+|. +..||+|+.||.+++|++.+..++..+.+|...|..++|+|+|++|++++-|.+-++||++++..+...+||...
T Consensus 226 hP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~ 305 (459)
T KOG0272|consen 226 HPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKG 305 (459)
T ss_pred ccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccc
Confidence 995 678999999999999999999999999999999999999999999999999999999999999998888999999
Q ss_pred eEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEEEeecC-CCCCCCeecCCCCCccCCceeeeecCC
Q 009715 366 VSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRG-PLGGSPTFSTGSQSAHWDNVCPVGTLQ 444 (528)
Q Consensus 366 V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~d~~~~~g~~~ 444 (528)
|.+++|+| || .+++||+.|..-+|||+++++++..+..+ .++..+.|+|+| -.+++|+.|
T Consensus 306 v~~iaf~~-------DG------SL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNG------y~lATgs~D 366 (459)
T KOG0272|consen 306 VFSIAFQP-------DG------SLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNG------YHLATGSSD 366 (459)
T ss_pred cceeEecC-------CC------ceeeccCccchhheeecccCcEEEEecccccceeeEeECCCc------eEEeecCCC
Confidence 99999999 99 89999999999999999999999999865 578899999998 567899999
Q ss_pred CCceeeecCCCCceEEeecCCCCeEEEEEeCC---eEEEEECCCeEEEEeCCCCcc--ccCCCccce--EEEccCCceEE
Q 009715 445 PAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE---SVLTVCREGHIKIWMRPGVAE--SQSSSSETV--LSTSSKDKPLL 517 (528)
Q Consensus 445 ~~~~~~d~~~~~~~~~~~~h~~~V~~l~~s~d---~l~t~s~Dg~i~iW~~~~~~~--~~~~~~~~v--l~~spd~~~l~ 517 (528)
+..++||++..+++..+.+|..-|+.|.|+|+ +|+|++.|++++||.-.+... ...+|.+.| +.++||+.+++
T Consensus 367 nt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~ 446 (459)
T KOG0272|consen 367 NTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIA 446 (459)
T ss_pred CcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEE
Confidence 99999999999999999999999999999994 399999999999999887663 455899999 66699999999
Q ss_pred Eeeeecc
Q 009715 518 SSKVVTS 524 (528)
Q Consensus 518 s~~~~gs 524 (528)
+++.+.+
T Consensus 447 t~s~DRT 453 (459)
T KOG0272|consen 447 TSSFDRT 453 (459)
T ss_pred EeccCce
Confidence 9987754
No 8
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.7e-33 Score=268.44 Aligned_cols=371 Identities=16% Similarity=0.230 Sum_probs=274.6
Q ss_pred CCCcceeeeCCCccEEEEeCCCcEEEEeCCCCCCC---------------CCCCCeEEEEecCCcEEEEEcccccccccc
Q 009715 130 STSMTNTNFDGKGTYIIFNVGDAIFISDLNSQDKD---------------AKDGHDLLIGLNSGDVYSVSLRQQLQDVGK 194 (528)
Q Consensus 130 ~~s~~~~~~~~~g~~~~~~~~~~i~v~~~~~~~~~---------------~~~~~~l~~g~~~G~v~iwd~~~~~~~~~~ 194 (528)
.+-+.++..++.|+-++|..++.+++.+++.+... +|.|.+++.|...|.|+|||..+..
T Consensus 18 Rg~~~~ig~dpkgd~ilY~nGksv~ir~i~~~~~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~----- 92 (603)
T KOG0318|consen 18 RGVPIIIGGDPKGDNILYTNGKSVIIRNIDNPASVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKE----- 92 (603)
T ss_pred CCcceEeccCCCCCeEEEeCCCEEEEEECCCccceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcc-----
Confidence 45566777889999999999999999999987655 9999999999999999999986521
Q ss_pred ceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeCC---ceEEEEEcCCCCC-----CCC-ccccccccceeEEeccC
Q 009715 195 KLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHAD---GNLYVYEKSKDGA-----GDS-SFPVIKDQTQFSVAHPR 265 (528)
Q Consensus 195 ~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~d---g~v~vwd~~~~~~-----~~~-~~~~~~~~~~~~~~~~~ 265 (528)
..+..+...-.++|.+|+|+++++++.|+|... |.+.+||-.+.-. ... .-..++....|.+...
T Consensus 93 -----hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~- 166 (603)
T KOG0318|consen 93 -----HILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATG- 166 (603)
T ss_pred -----eeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecCCCccceeeccceeEeeeeccCCCceEEEec-
Confidence 122333445778999999999999555555322 5678888644110 000 0011122222222211
Q ss_pred CCCCCCeEE-----------EeecCCCeEEEEECCCCCEEEEEeCCCcEEEEecCCceEEeeec---ccCCCeEEEEEcC
Q 009715 266 YSKSNPIAR-----------WHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGK---SYYGALLCCAWSM 331 (528)
Q Consensus 266 ~~~~~~~~~-----------~~~h~~~v~~l~~spdg~~l~s~~~dg~i~vwd~~~~~~~~~~~---~~~~~v~~l~~sp 331 (528)
+.++.+.. ++.|..-|+|+.|+|||.++++.+.||.+.+||-.+++.+..+. +|.+.|.+|+|+|
T Consensus 167 -sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsP 245 (603)
T KOG0318|consen 167 -SDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSP 245 (603)
T ss_pred -cCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECC
Confidence 23333333 34588999999999999999999999999999999999998887 7999999999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEE-------------------------------------------EeecCCCCeEE
Q 009715 332 DGKYILTGGEDDLVQVWSMEDRKVVA-------------------------------------------WGEGHNSWVSG 368 (528)
Q Consensus 332 ~g~~l~sg~~dg~v~vwd~~~~~~~~-------------------------------------------~~~~h~~~V~~ 368 (528)
|+..+++++.|.+++|||+.+.+++. .+.||...|++
T Consensus 246 Ds~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITa 325 (603)
T KOG0318|consen 246 DSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITA 325 (603)
T ss_pred CCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeE
Confidence 99999999999999999987654333 33589999999
Q ss_pred EEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEEE-----------eecCC-------------------
Q 009715 369 VAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVP-----------LRRGP------------------- 418 (528)
Q Consensus 369 v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~-----------~~~~~------------------- 418 (528)
+..+| |+ ..|++|+.||.|.-||..++..-.. +....
T Consensus 326 Ltv~~-------d~------~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~ 392 (603)
T KOG0318|consen 326 LTVSP-------DG------KTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLK 392 (603)
T ss_pred EEEcC-------CC------CEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecc
Confidence 99999 98 7999999999999999877643211 11000
Q ss_pred --------------CCCCCeecCCCC--------------------------------CccCCceeeeecCCCCceeeec
Q 009715 419 --------------LGGSPTFSTGSQ--------------------------------SAHWDNVCPVGTLQPAPSMRDV 452 (528)
Q Consensus 419 --------------~~~~~~~s~~~~--------------------------------~~~~d~~~~~g~~~~~~~~~d~ 452 (528)
....++...++. ...-...+.+|..++.+.+|.+
T Consensus 393 ~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl 472 (603)
T KOG0318|consen 393 DNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSL 472 (603)
T ss_pred cCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEe
Confidence 000111111110 0011233588999999999998
Q ss_pred CCCC--ceEEeecCCCCeEEEEEeCCe--EEEEECCCeEEEEeCCCCccccC---CCccce--EEEccCCceEEEeeeec
Q 009715 453 PKLS--PLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWMRPGVAESQS---SSSETV--LSTSSKDKPLLSSKVVT 523 (528)
Q Consensus 453 ~~~~--~~~~~~~h~~~V~~l~~s~d~--l~t~s~Dg~i~iW~~~~~~~~~~---~~~~~v--l~~spd~~~l~s~~~~g 523 (528)
.... +...+..|.++|++++|+||+ |+++-..+.|.+||+.+.+.... -|...| ++|+||.+.+|+|+.+-
T Consensus 473 ~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt 552 (603)
T KOG0318|consen 473 SGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDT 552 (603)
T ss_pred cCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccc
Confidence 7644 444566899999999999985 88888999999999998875333 488888 89999999999999885
Q ss_pred cc
Q 009715 524 SS 525 (528)
Q Consensus 524 s~ 525 (528)
.+
T Consensus 553 ~V 554 (603)
T KOG0318|consen 553 NV 554 (603)
T ss_pred eE
Confidence 54
No 9
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=2.2e-36 Score=279.85 Aligned_cols=272 Identities=18% Similarity=0.270 Sum_probs=235.4
Q ss_pred CCCCCeEEEEecCCcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCC
Q 009715 165 AKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDG 244 (528)
Q Consensus 165 ~~~~~~l~~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~ 244 (528)
.|+|+.|++|+..|.+.+|+... ..|......|.++|+++.|++++. ++++|..+|.|++|+...
T Consensus 105 tPeGRRLltgs~SGEFtLWNg~~------------fnFEtilQaHDs~Vr~m~ws~~g~-wmiSgD~gG~iKyWqpnm-- 169 (464)
T KOG0284|consen 105 TPEGRRLLTGSQSGEFTLWNGTS------------FNFETILQAHDSPVRTMKWSHNGT-WMISGDKGGMIKYWQPNM-- 169 (464)
T ss_pred cCCCceeEeecccccEEEecCce------------eeHHHHhhhhcccceeEEEccCCC-EEEEcCCCceEEecccch--
Confidence 58999999999999999999754 223333445999999999999999 999999999999999864
Q ss_pred CCCCccccccccceeEEeccCCCCCCCeEEEeecC-CCeEEEEECCCCCEEEEEeCCCcEEEEecCCceEEeeecccCCC
Q 009715 245 AGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQ-GSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGA 323 (528)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~spdg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~ 323 (528)
+.++.++.|. ..|++++|+|+...+++++.||.|+|||....+.-..+.+|...
T Consensus 170 -------------------------nnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwd 224 (464)
T KOG0284|consen 170 -------------------------NNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWD 224 (464)
T ss_pred -------------------------hhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCC
Confidence 4455556555 89999999998899999999999999999988877788999999
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEE
Q 009715 324 LLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLW 403 (528)
Q Consensus 324 v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lw 403 (528)
|.+++|+|...+|++|+.|..|++||.+++.|+.++.+|...|..+.|.| ++ ++|++++.|..++++
T Consensus 225 VksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~-------n~------N~Llt~skD~~~kv~ 291 (464)
T KOG0284|consen 225 VKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNP-------NG------NWLLTGSKDQSCKVF 291 (464)
T ss_pred cceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcC-------CC------CeeEEccCCceEEEE
Confidence 99999999999999999999999999999999999999999999999999 88 799999999999999
Q ss_pred EccCCeEEEEeecC-CCCCCCeecCCCCCccCCceeeeecCCCCceeeecCCCCceEEee-cCCCCeEEEEEeCCe--EE
Q 009715 404 DLEMDEIVVPLRRG-PLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHR-VHTEPLSGLIFTQES--VL 479 (528)
Q Consensus 404 d~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~-~h~~~V~~l~~s~d~--l~ 479 (528)
|+++.+.+..++.+ ..+.++++.+-. ...+..|..++.+..|.+...+|+..+. +|...|++++|+|=+ |+
T Consensus 292 DiR~mkEl~~~r~Hkkdv~~~~WhP~~-----~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~ 366 (464)
T KOG0284|consen 292 DIRTMKELFTYRGHKKDVTSLTWHPLN-----ESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILA 366 (464)
T ss_pred ehhHhHHHHHhhcchhhheeecccccc-----ccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEe
Confidence 99987777777743 345555554433 3455778888999999998777776664 799999999999964 89
Q ss_pred EEECCCeEEEEeCCC
Q 009715 480 TVCREGHIKIWMRPG 494 (528)
Q Consensus 480 t~s~Dg~i~iW~~~~ 494 (528)
+|+.|.++++|....
T Consensus 367 tgsnd~t~rfw~r~r 381 (464)
T KOG0284|consen 367 TGSNDRTVRFWTRNR 381 (464)
T ss_pred ecCCCcceeeeccCC
Confidence 999999999998643
No 10
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=6.5e-34 Score=251.72 Aligned_cols=277 Identities=19% Similarity=0.278 Sum_probs=232.5
Q ss_pred ccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEE
Q 009715 208 VNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAF 287 (528)
Q Consensus 208 ~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 287 (528)
.|++.|+.++..+.+..++++++.|..+.+|++..+. .....+++.+.+|...|..+..
T Consensus 13 gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd---------------------~~~G~~~r~~~GHsH~v~dv~~ 71 (315)
T KOG0279|consen 13 GHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDD---------------------IKYGVPVRRLTGHSHFVSDVVL 71 (315)
T ss_pred CCCceEEEEEeecCCCceEEEcccceEEEEEEeccCc---------------------cccCceeeeeeccceEecceEE
Confidence 4999999999999987799999999999999998641 1125688999999999999999
Q ss_pred CCCCCEEEEEeCCCcEEEEecCCceEEeeecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeec-CCCCe
Q 009715 288 STDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEG-HNSWV 366 (528)
Q Consensus 288 spdg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~~~~~~~~-h~~~V 366 (528)
++||++.++++.|+.+++||+.+++..+.|.+|...|.+++|++|.+.+++|+.|.+|++|++.....+..... |.++|
T Consensus 72 s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WV 151 (315)
T KOG0279|consen 72 SSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWV 151 (315)
T ss_pred ccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcE
Confidence 99999999999999999999999999999999999999999999999999999999999999875544333332 38999
Q ss_pred EEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEEEeecC-CCCCCCeecCCCCCccCCceeeeecCCC
Q 009715 367 SGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRG-PLGGSPTFSTGSQSAHWDNVCPVGTLQP 445 (528)
Q Consensus 367 ~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~d~~~~~g~~~~ 445 (528)
+++.|+| +.+. ..|++++.|++|++||+++.+....+..+ .....++++++| ..+..|..++
T Consensus 152 scvrfsP-----~~~~------p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDG------slcasGgkdg 214 (315)
T KOG0279|consen 152 SCVRFSP-----NESN------PIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDG------SLCASGGKDG 214 (315)
T ss_pred EEEEEcC-----CCCC------cEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCC------CEEecCCCCc
Confidence 9999999 1113 58999999999999999999988777654 456789999998 5556688899
Q ss_pred CceeeecCCCCceEEeecCCCCeEEEEEeCCe-EEEEECCCeEEEEeCCCCccccC------CC----ccc--e-EEEcc
Q 009715 446 APSMRDVPKLSPLVAHRVHTEPLSGLIFTQES-VLTVCREGHIKIWMRPGVAESQS------SS----SET--V-LSTSS 511 (528)
Q Consensus 446 ~~~~~d~~~~~~~~~~~~h~~~V~~l~~s~d~-l~t~s~Dg~i~iW~~~~~~~~~~------~~----~~~--v-l~~sp 511 (528)
...+||+...+.+..+ .|...|.+++|+|+. .+++..+-.|+|||+.++..... +. .+. + +++++
T Consensus 215 ~~~LwdL~~~k~lysl-~a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~ 293 (315)
T KOG0279|consen 215 EAMLWDLNEGKNLYSL-EAFDIVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSA 293 (315)
T ss_pred eEEEEEccCCceeEec-cCCCeEeeEEecCCceeEeeccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcC
Confidence 9999999999887776 478899999999974 66667777899999987663221 11 111 2 89999
Q ss_pred CCceEEEeeeec
Q 009715 512 KDKPLLSSKVVT 523 (528)
Q Consensus 512 d~~~l~s~~~~g 523 (528)
||..|..+--+|
T Consensus 294 dG~tLf~g~td~ 305 (315)
T KOG0279|consen 294 DGQTLFAGYTDN 305 (315)
T ss_pred CCcEEEeeecCC
Confidence 999999986554
No 11
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=8.4e-34 Score=251.03 Aligned_cols=272 Identities=16% Similarity=0.213 Sum_probs=222.1
Q ss_pred CCeEEEEecCCcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCC
Q 009715 168 GHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGD 247 (528)
Q Consensus 168 ~~~l~~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~ 247 (528)
...++.++.|..+.+|++...... .....+...+|...|..++.+++|+ ++++++.|+++++||+..
T Consensus 28 ~~~l~sasrDk~ii~W~L~~dd~~-------~G~~~r~~~GHsH~v~dv~~s~dg~-~alS~swD~~lrlWDl~~----- 94 (315)
T KOG0279|consen 28 SDILVSASRDKTIIVWKLTSDDIK-------YGVPVRRLTGHSHFVSDVVLSSDGN-FALSASWDGTLRLWDLAT----- 94 (315)
T ss_pred CceEEEcccceEEEEEEeccCccc-------cCceeeeeeccceEecceEEccCCc-eEEeccccceEEEEEecC-----
Confidence 345566667777777877653111 1222333445999999999999999 999999999999999986
Q ss_pred CccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCCCCEEEEEeCCCcEEEEecCCceEEeeecc-cCCCeEE
Q 009715 248 SSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKS-YYGALLC 326 (528)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~~~dg~i~vwd~~~~~~~~~~~~-~~~~v~~ 326 (528)
.++.+.+.+|...|.+++|++|.+.|++|+.|.+|++|+...+........ +.+.|.|
T Consensus 95 ---------------------g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVsc 153 (315)
T KOG0279|consen 95 ---------------------GESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSC 153 (315)
T ss_pred ---------------------CcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEE
Confidence 357788999999999999999999999999999999999985544433332 2789999
Q ss_pred EEEcCC--CCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEE
Q 009715 327 CAWSMD--GKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWD 404 (528)
Q Consensus 327 l~~sp~--g~~l~sg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd 404 (528)
+.|+|+ ..+|++++.|+.|++||+++.+....+.+|.+.++.++++| || .+.++|+.||.+.+||
T Consensus 154 vrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSp-------DG------slcasGgkdg~~~Lwd 220 (315)
T KOG0279|consen 154 VRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSP-------DG------SLCASGGKDGEAMLWD 220 (315)
T ss_pred EEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECC-------CC------CEEecCCCCceEEEEE
Confidence 999997 67999999999999999999999999999999999999999 99 8999999999999999
Q ss_pred ccCCeEEEEeecCCCCCCCeecCCCCCccCCceeeeecCCCCceeeecCCCCceEEeec---------CCCCeEEEEEeC
Q 009715 405 LEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRV---------HTEPLSGLIFTQ 475 (528)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~---------h~~~V~~l~~s~ 475 (528)
++.++.++.+.+...+.+++|+|... ...-.....+++||......+..+.. ......+++|++
T Consensus 221 L~~~k~lysl~a~~~v~sl~fspnry-------wL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~ 293 (315)
T KOG0279|consen 221 LNEGKNLYSLEAFDIVNSLCFSPNRY-------WLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSA 293 (315)
T ss_pred ccCCceeEeccCCCeEeeEEecCCce-------eEeeccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcC
Confidence 99999999999999999999999863 22222344577788776655544431 123456789999
Q ss_pred Ce--EEEEECCCeEEEEeCC
Q 009715 476 ES--VLTVCREGHIKIWMRP 493 (528)
Q Consensus 476 d~--l~t~s~Dg~i~iW~~~ 493 (528)
|+ |+++-.|+.|++|.+.
T Consensus 294 dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 294 DGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred CCcEEEeeecCCcEEEEEee
Confidence 86 9999999999999874
No 12
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=4.5e-33 Score=262.36 Aligned_cols=315 Identities=18% Similarity=0.224 Sum_probs=258.6
Q ss_pred CeEEEEecCCcEEEEEccccccccccceee--eeeeccCCcccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCC
Q 009715 169 HDLLIGLNSGDVYSVSLRQQLQDVGKKLVG--AHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAG 246 (528)
Q Consensus 169 ~~l~~g~~~G~v~iwd~~~~~~~~~~~~~~--~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~ 246 (528)
..|++|..+-..++|++......-...++- +.++.......+..|++++|+.+|. +||+|..||.++||+..-
T Consensus 192 ~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~-~LatG~~~G~~riw~~~G---- 266 (524)
T KOG0273|consen 192 GLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGT-LLATGSEDGEARIWNKDG---- 266 (524)
T ss_pred hhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCC-eEEEeecCcEEEEEecCc----
Confidence 378889999999999987511110000000 0000001111456899999999999 999999999999999862
Q ss_pred CCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCCCCEEEEEeCCCcEEEEecCCceEEeeecccCCCeEE
Q 009715 247 DSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLC 326 (528)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~ 326 (528)
+.+..+..|.++|.++.|+.+|.+|++++.|+++.+||..+++..+.+.-|..+-..
T Consensus 267 -----------------------~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lD 323 (524)
T KOG0273|consen 267 -----------------------NLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALD 323 (524)
T ss_pred -----------------------hhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccc
Confidence 455667778999999999999999999999999999999999999999888888788
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEcc
Q 009715 327 CAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLE 406 (528)
Q Consensus 327 l~~sp~g~~l~sg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~ 406 (528)
|.|-.+. -+++++.|+.|+|+.+....++.++.+|.+.|.++.|+| .| .+|++++.|++++||...
T Consensus 324 VdW~~~~-~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~-------tg------~LLaS~SdD~TlkiWs~~ 389 (524)
T KOG0273|consen 324 VDWQSND-EFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNP-------TG------SLLASCSDDGTLKIWSMG 389 (524)
T ss_pred eEEecCc-eEeecCCCceEEEEEecCCCcceeeecccCceEEEEECC-------CC------ceEEEecCCCeeEeeecC
Confidence 9998654 589999999999999999999999999999999999999 88 899999999999999999
Q ss_pred CCeEEEEeecC-CCCCCCeecCCCC--CccCC-ceeeeecCCCCceeeecCCCCceEEeecCCCCeEEEEEeCCe--EEE
Q 009715 407 MDEIVVPLRRG-PLGGSPTFSTGSQ--SAHWD-NVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLT 480 (528)
Q Consensus 407 ~~~~~~~~~~~-~~~~~~~~s~~~~--~~~~d-~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~~s~d~--l~t 480 (528)
...+...+..+ ..+..+.+++.+. ...++ ..+.....+..+++||+..+.++..+..|..+|++|+|+|++ +++
T Consensus 390 ~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAs 469 (524)
T KOG0273|consen 390 QSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLAS 469 (524)
T ss_pred CCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEe
Confidence 98888877654 3577778888775 22233 445777889999999999999999999999999999999974 999
Q ss_pred EECCCeEEEEeCCCCccccC-CCccce--EEEccCCceEEEeeeeccc
Q 009715 481 VCREGHIKIWMRPGVAESQS-SSSETV--LSTSSKDKPLLSSKVVTSS 525 (528)
Q Consensus 481 ~s~Dg~i~iW~~~~~~~~~~-~~~~~v--l~~spd~~~l~s~~~~gs~ 525 (528)
|+.||.|.+|+.+.++.... ...+.| +.|+.+|.+|..+-.+|+.
T Consensus 470 Gs~dg~V~iws~~~~~l~~s~~~~~~Ifel~Wn~~G~kl~~~~sd~~v 517 (524)
T KOG0273|consen 470 GSLDGCVHIWSTKTGKLVKSYQGTGGIFELCWNAAGDKLGACASDGSV 517 (524)
T ss_pred cCCCCeeEeccccchheeEeecCCCeEEEEEEcCCCCEEEEEecCCCc
Confidence 99999999999998886554 445555 8889999999877666654
No 13
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=4e-34 Score=285.77 Aligned_cols=255 Identities=17% Similarity=0.285 Sum_probs=215.5
Q ss_pred EeCCCcEEEEeCCCCCCCCCCCCeEEEEecCCcEEEEEccccc----ccc--ccce--------eee-----eeeccCCc
Q 009715 147 FNVGDAIFISDLNSQDKDAKDGHDLLIGLNSGDVYSVSLRQQL----QDV--GKKL--------VGA-----HHYNKDGS 207 (528)
Q Consensus 147 ~~~~~~i~v~~~~~~~~~~~~~~~l~~g~~~G~v~iwd~~~~~----~~~--~~~~--------~~~-----~~~~~~~~ 207 (528)
.|....+...++. .|...||+|+.|-.|++|.+.... .+. ...+ ... ....+...
T Consensus 375 ~nt~~~v~ca~fS------ddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~ 448 (707)
T KOG0263|consen 375 HNTYQGVTCAEFS------DDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLY 448 (707)
T ss_pred EEcCCcceeEeec------CCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEee
Confidence 3445555555554 667788889999999999887311 000 0000 000 00111133
Q ss_pred ccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEE
Q 009715 208 VNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAF 287 (528)
Q Consensus 208 ~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 287 (528)
+|.++|..+.|+|+.+ +|++++.|++|++|.+.+ ...+..+++|..+|.++.|
T Consensus 449 GH~GPVyg~sFsPd~r-fLlScSED~svRLWsl~t--------------------------~s~~V~y~GH~~PVwdV~F 501 (707)
T KOG0263|consen 449 GHSGPVYGCSFSPDRR-FLLSCSEDSSVRLWSLDT--------------------------WSCLVIYKGHLAPVWDVQF 501 (707)
T ss_pred cCCCceeeeeeccccc-ceeeccCCcceeeeeccc--------------------------ceeEEEecCCCcceeeEEe
Confidence 6999999999999999 999999999999999986 3467778899999999999
Q ss_pred CCCCCEEEEEeCCCcEEEEecCCceEEeeecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCeE
Q 009715 288 STDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVS 367 (528)
Q Consensus 288 spdg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~~~~~~~~h~~~V~ 367 (528)
+|.|-|+|+++.|++.++|.....++++.+.+|...|.|+.|+|+..|+++|+.|.+|++||+.+|..++.|.||.++|.
T Consensus 502 ~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~ 581 (707)
T KOG0263|consen 502 APRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVT 581 (707)
T ss_pred cCCceEEEecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEEEeecCCCCCCCeecCCCCCccCCceeeeecCCCCc
Q 009715 368 GVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAP 447 (528)
Q Consensus 368 ~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~d~~~~~g~~~~~~ 447 (528)
+|+|+| +| ++|++|+.|+.|++||+.+++.+..
T Consensus 582 al~~Sp-------~G------r~LaSg~ed~~I~iWDl~~~~~v~~---------------------------------- 614 (707)
T KOG0263|consen 582 ALAFSP-------CG------RYLASGDEDGLIKIWDLANGSLVKQ---------------------------------- 614 (707)
T ss_pred EEEEcC-------CC------ceEeecccCCcEEEEEcCCCcchhh----------------------------------
Confidence 999999 99 8999999999999999998876543
Q ss_pred eeeecCCCCceEEeecCCCCeEEEEEeCCe--EEEEECCCeEEEEeCCC
Q 009715 448 SMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWMRPG 494 (528)
Q Consensus 448 ~~~d~~~~~~~~~~~~h~~~V~~l~~s~d~--l~t~s~Dg~i~iW~~~~ 494 (528)
+.+|++.|.+|.|+.|+ |+++|.|.+|++||+..
T Consensus 615 -------------l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 615 -------------LKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred -------------hhcccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 44689999999999986 99999999999999754
No 14
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=9.9e-32 Score=266.17 Aligned_cols=371 Identities=18% Similarity=0.234 Sum_probs=291.3
Q ss_pred hhhhhhhhcCCCCCce--eeccCCCCCCCccccCCcccCCcccCCCCCCcceeeeCCCccEEEEeCCCc-EE--------
Q 009715 86 VRSAAAKLLGTGNGSR--TLGFGGGNGGSKSISGSSRIGSLGASSSSTSMTNTNFDGKGTYIIFNVGDA-IF-------- 154 (528)
Q Consensus 86 ~~~~~~~~~~~~~g~~--~~sf~gh~~~v~~v~~s~~~~~~~~s~s~~s~~~~~~~~~g~~~~~~~~~~-i~-------- 154 (528)
++.-++|+|++..-+. .+.|.||.+.|-.+-|.. ++..+.+...||.++.|..... ..
T Consensus 164 srD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~-----------~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~ 232 (893)
T KOG0291|consen 164 SRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGA-----------NSLDLYTVSKDGALFVWTCDLRPPELDKAEKDE 232 (893)
T ss_pred cccceEEEEEeccccccceEeccCCCcceEEEEecc-----------CcceEEEEecCceEEEEEecCCCcccccccccc
Confidence 6788999999988666 788899999997777755 4556777788999998876510 00
Q ss_pred -------------------EEe------CCCC-CCC-----CCCCCeEEEEecCCcEEEEEccccccccccceeeeeeec
Q 009715 155 -------------------ISD------LNSQ-DKD-----AKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYN 203 (528)
Q Consensus 155 -------------------v~~------~~~~-~~~-----~~~~~~l~~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~ 203 (528)
+|. ++.. .+. |+.-+.|++|.++|...++++... ...
T Consensus 233 eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f------------~li 300 (893)
T KOG0291|consen 233 EGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDF------------NLI 300 (893)
T ss_pred cccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCc------------eEE
Confidence 111 1100 000 788899999999999999998761 122
Q ss_pred cCCcccCCceeEEEEeeCCCcEEEEEeCC-ceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCe
Q 009715 204 KDGSVNNSRCTSVTWVPGGDGAFVVGHAD-GNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSI 282 (528)
Q Consensus 204 ~~~~~h~~~v~~l~~~p~g~~~l~tg~~d-g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 282 (528)
....+...+|..++|+..|+ +|+.|+.. |.+-||+.+.+ ..+...++|...+
T Consensus 301 h~LSis~~~I~t~~~N~tGD-WiA~g~~klgQLlVweWqsE--------------------------sYVlKQQgH~~~i 353 (893)
T KOG0291|consen 301 HSLSISDQKILTVSFNSTGD-WIAFGCSKLGQLLVWEWQSE--------------------------SYVLKQQGHSDRI 353 (893)
T ss_pred EEeecccceeeEEEecccCC-EEEEcCCccceEEEEEeecc--------------------------ceeeeccccccce
Confidence 22233567899999999999 88887754 89999999862 3556668899999
Q ss_pred EEEEECCCCCEEEEEeCCCcEEEEecCCceEEeeecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecC
Q 009715 283 NSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGH 362 (528)
Q Consensus 283 ~~l~~spdg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~~~~~~~~h 362 (528)
++++++|||+++|+|+.||.|+|||...+-|+.++..|...|..+.|+.+|+.+++.+.||+|+.||+...+..+++...
T Consensus 354 ~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P 433 (893)
T KOG0291|consen 354 TSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSP 433 (893)
T ss_pred eeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998743
Q ss_pred -CCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCC-eEEEEEccCCeEEEEeecC-CCCCCCeecCCCCCccCCceee
Q 009715 363 -NSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDT-RLLLWDLEMDEIVVPLRRG-PLGGSPTFSTGSQSAHWDNVCP 439 (528)
Q Consensus 363 -~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~-~i~lwd~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~d~~~~ 439 (528)
.-...+|+.+| .| .++.+|+.|. .|.+|++.+|+.+..+..+ .++..+.|++.+. .+.
T Consensus 434 ~p~QfscvavD~-------sG------elV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~------~La 494 (893)
T KOG0291|consen 434 EPIQFSCVAVDP-------SG------ELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGS------LLA 494 (893)
T ss_pred CceeeeEEEEcC-------CC------CEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccC------eEE
Confidence 34567899988 78 5788888885 6999999999999998765 5778889999884 556
Q ss_pred eecCCCCceeeecCCCCceEEeecCCCCeEEEEEeCCe--EEEEECCCeEEEEeCCCCcccc---------C--------
Q 009715 440 VGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWMRPGVAESQ---------S-------- 500 (528)
Q Consensus 440 ~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~~s~d~--l~t~s~Dg~i~iW~~~~~~~~~---------~-------- 500 (528)
.++.|..+++||+-.......--.+...+..++|+||+ |+.+..||.|.+||.....+.- .
T Consensus 495 S~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ 574 (893)
T KOG0291|consen 495 SGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRI 574 (893)
T ss_pred eccccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhcccccccccee
Confidence 66677778888875543332333456779999999986 9999999999999975433210 0
Q ss_pred --C---Cccce--EEEccCCceEEEeeeeccc
Q 009715 501 --S---SSETV--LSTSSKDKPLLSSKVVTSS 525 (528)
Q Consensus 501 --~---~~~~v--l~~spd~~~l~s~~~~gs~ 525 (528)
. ..... +..|+||++|++|+...++
T Consensus 575 ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~i 606 (893)
T KOG0291|consen 575 TAENSAKGKTFTTICYSADGKCILAGGESNSI 606 (893)
T ss_pred ehhhcccCCceEEEEEcCCCCEEEecCCcccE
Confidence 1 11122 7789999999999877554
No 15
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=5.2e-32 Score=241.05 Aligned_cols=271 Identities=18% Similarity=0.254 Sum_probs=235.8
Q ss_pred CcccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEE
Q 009715 206 GSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSI 285 (528)
Q Consensus 206 ~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 285 (528)
..+|...|.++.|++|.+ +|++++.||.+.|||.-+. +.++.+......|..+
T Consensus 51 LkGH~~Ki~~~~ws~Dsr-~ivSaSqDGklIvWDs~Tt--------------------------nK~haipl~s~WVMtC 103 (343)
T KOG0286|consen 51 LKGHLNKIYAMDWSTDSR-RIVSASQDGKLIVWDSFTT--------------------------NKVHAIPLPSSWVMTC 103 (343)
T ss_pred ecccccceeeeEecCCcC-eEEeeccCCeEEEEEcccc--------------------------cceeEEecCceeEEEE
Confidence 345999999999999999 9999999999999998652 3334444445789999
Q ss_pred EECCCCCEEEEEeCCCcEEEEecCCc------eEEeeecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEe
Q 009715 286 AFSTDGTYLATVGRDGYLRVFDYSKE------QLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWG 359 (528)
Q Consensus 286 ~~spdg~~l~s~~~dg~i~vwd~~~~------~~~~~~~~~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~~~~~~ 359 (528)
+|+|.|+++|+|+.|....||++.+. +..+.+.+|.+.+.|+.|-+|+ +|++++.|.++.+||+++++.+..+
T Consensus 104 A~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~-~ilT~SGD~TCalWDie~g~~~~~f 182 (343)
T KOG0286|consen 104 AYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN-HILTGSGDMTCALWDIETGQQTQVF 182 (343)
T ss_pred EECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCC-ceEecCCCceEEEEEcccceEEEEe
Confidence 99999999999999999999999854 3446688999999999999866 6899999999999999999999999
Q ss_pred ecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEEEeecC-CCCCCCeecCCCCCccCCcee
Q 009715 360 EGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRG-PLGGSPTFSTGSQSAHWDNVC 438 (528)
Q Consensus 360 ~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~d~~~ 438 (528)
.+|.+.|.++.+.|. ++ +.+++|+.|+..+|||++.+.+++.|..+ ..+..+.|-|++ ..+
T Consensus 183 ~GH~gDV~slsl~p~------~~------ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G------~af 244 (343)
T KOG0286|consen 183 HGHTGDVMSLSLSPS------DG------NTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSG------DAF 244 (343)
T ss_pred cCCcccEEEEecCCC------CC------CeEEecccccceeeeeccCcceeEeecccccccceEEEccCC------Cee
Confidence 999999999999983 66 79999999999999999999999999865 578899999998 567
Q ss_pred eeecCCCCceeeecCCCCceEEeec--CCCCeEEEEEeCCe--EEEEECCCeEEEEeCCCCc--cccCCCccce--EEEc
Q 009715 439 PVGTLQPAPSMRDVPKLSPLVAHRV--HTEPLSGLIFTQES--VLTVCREGHIKIWMRPGVA--ESQSSSSETV--LSTS 510 (528)
Q Consensus 439 ~~g~~~~~~~~~d~~~~~~~~~~~~--h~~~V~~l~~s~d~--l~t~s~Dg~i~iW~~~~~~--~~~~~~~~~v--l~~s 510 (528)
..|+.+...++||++..+.+..+.. -..+|++++|+..+ |+.|..|.++.+||.-.++ -.+.+|...| +.++
T Consensus 245 atGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s 324 (343)
T KOG0286|consen 245 ATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVS 324 (343)
T ss_pred eecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEEC
Confidence 8999999999999999888887763 23489999999975 7788899999999965554 3456899988 9999
Q ss_pred cCCceEEEeeee
Q 009715 511 SKDKPLLSSKVV 522 (528)
Q Consensus 511 pd~~~l~s~~~~ 522 (528)
|||-.|++|+.+
T Consensus 325 ~DG~av~TgSWD 336 (343)
T KOG0286|consen 325 PDGMAVATGSWD 336 (343)
T ss_pred CCCcEEEecchh
Confidence 999999999876
No 16
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.6e-32 Score=271.53 Aligned_cols=357 Identities=19% Similarity=0.251 Sum_probs=268.4
Q ss_pred hhhhhhhhcCCCCCceeeccCCCCCCCccccCCcccC-CcccCCCCCCcc-----------------------eeeeCCC
Q 009715 86 VRSAAAKLLGTGNGSRTLGFGGGNGGSKSISGSSRIG-SLGASSSSTSMT-----------------------NTNFDGK 141 (528)
Q Consensus 86 ~~~~~~~~~~~~~g~~~~sf~gh~~~v~~v~~s~~~~-~~~~s~s~~s~~-----------------------~~~~~~~ 141 (528)
.+....++|+...+....+|+||.|.|.++.|.|... .+++++..+... -+.+..|
T Consensus 124 gaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d 203 (775)
T KOG0319|consen 124 GADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSED 203 (775)
T ss_pred cccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccC
Confidence 4577889999999999999999999999999999666 345555532211 1122333
Q ss_pred ccEEEE-eCCCcEEEEeCCCCCCC--------------CCC-----CCeEEEEecCCcEEEEEccccc------cc----
Q 009715 142 GTYIIF-NVGDAIFISDLNSQDKD--------------AKD-----GHDLLIGLNSGDVYSVSLRQQL------QD---- 191 (528)
Q Consensus 142 g~~~~~-~~~~~i~v~~~~~~~~~--------------~~~-----~~~l~~g~~~G~v~iwd~~~~~------~~---- 191 (528)
+.-++. ..++-+.+||+...... .++ +.++++.+.+|.+++||..... +.
T Consensus 204 ~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e 283 (775)
T KOG0319|consen 204 SLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEE 283 (775)
T ss_pred CceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchh
Confidence 332222 22344677887543222 222 4577888888888888764310 00
Q ss_pred c-------------------------------ccceee-------eeeecc-------------------------CCcc
Q 009715 192 V-------------------------------GKKLVG-------AHHYNK-------------------------DGSV 208 (528)
Q Consensus 192 ~-------------------------------~~~~~~-------~~~~~~-------------------------~~~~ 208 (528)
. .+.++. ...+.+ ...+
T Consensus 284 ~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~G 363 (775)
T KOG0319|consen 284 IDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPG 363 (775)
T ss_pred hhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeC
Confidence 0 000000 000000 0115
Q ss_pred cCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEEC
Q 009715 209 NNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFS 288 (528)
Q Consensus 209 h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 288 (528)
|...|.++....+|. +|++|+.|.++++|.++.+. .+..++....+|++.|.+++++
T Consensus 364 H~e~vlSL~~~~~g~-llat~sKD~svilWr~~~~~----------------------~~~~~~a~~~gH~~svgava~~ 420 (775)
T KOG0319|consen 364 HTEAVLSLDVWSSGD-LLATGSKDKSVILWRLNNNC----------------------SKSLCVAQANGHTNSVGAVAGS 420 (775)
T ss_pred chhheeeeeecccCc-EEEEecCCceEEEEEecCCc----------------------chhhhhhhhcccccccceeeec
Confidence 999999999666777 99999999999999985321 1234566678899999999997
Q ss_pred CC-CCEEEEEeCCCcEEEEecCCce-----EE----eeecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEE
Q 009715 289 TD-GTYLATVGRDGYLRVFDYSKEQ-----LI----CGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAW 358 (528)
Q Consensus 289 pd-g~~l~s~~~dg~i~vwd~~~~~-----~~----~~~~~~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~~~~~ 358 (528)
.. -.+|++++.|+++++|++...+ .+ .....|...|+|++.+|+.+++++|+.|.+.+||++++...+.+
T Consensus 421 ~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~v 500 (775)
T KOG0319|consen 421 KLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGV 500 (775)
T ss_pred ccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEE
Confidence 74 4689999999999999997521 11 13456999999999999999999999999999999999999999
Q ss_pred eecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEEEeecCCCCCCCeecCCCCCccCCcee
Q 009715 359 GEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVC 438 (528)
Q Consensus 359 ~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~d~~~ 438 (528)
+.||...|.+|.|+| .. ..++|+|.|++|+||.+.+..|+.++
T Consensus 501 LsGH~RGvw~V~Fs~-------~d------q~laT~SgD~TvKIW~is~fSClkT~------------------------ 543 (775)
T KOG0319|consen 501 LSGHTRGVWCVSFSK-------ND------QLLATCSGDKTVKIWSISTFSCLKTF------------------------ 543 (775)
T ss_pred eeCCccceEEEEecc-------cc------ceeEeccCCceEEEEEeccceeeeee------------------------
Confidence 999999999999999 55 69999999999999999988877655
Q ss_pred eeecCCCCceeeecCCCCceEEeecCCCCeEEEEEeCCe--EEEEECCCeEEEEeCCCCccc--cCCCccce--EEEccC
Q 009715 439 PVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWMRPGVAES--QSSSSETV--LSTSSK 512 (528)
Q Consensus 439 ~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~~s~d~--l~t~s~Dg~i~iW~~~~~~~~--~~~~~~~v--l~~spd 512 (528)
.||+..|..+.|-.++ |++++.||.|++|++.+.... .-.|.+.| ++.+|+
T Consensus 544 -----------------------eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~ 600 (775)
T KOG0319|consen 544 -----------------------EGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPL 600 (775)
T ss_pred -----------------------cCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCc
Confidence 4699999999998864 999999999999999987744 44799999 666899
Q ss_pred CceEEEeeeeccc
Q 009715 513 DKPLLSSKVVTSS 525 (528)
Q Consensus 513 ~~~l~s~~~~gs~ 525 (528)
+.++++|+.+|++
T Consensus 601 ~~~~~tgg~Dg~i 613 (775)
T KOG0319|consen 601 LDMFVTGGGDGRI 613 (775)
T ss_pred cceeEecCCCeEE
Confidence 9999999888764
No 17
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.6e-32 Score=270.09 Aligned_cols=396 Identities=17% Similarity=0.201 Sum_probs=304.4
Q ss_pred hhhhhhhhcCCCCCceeeccCC-CCCCCccccCCcccCCcccCCCCCCcceeeeCCCccEEEEeCCCcEEEEeCCCCCCC
Q 009715 86 VRSAAAKLLGTGNGSRTLGFGG-GNGGSKSISGSSRIGSLGASSSSTSMTNTNFDGKGTYIIFNVGDAIFISDLNSQDKD 164 (528)
Q Consensus 86 ~~~~~~~~~~~~~g~~~~sf~g-h~~~v~~v~~s~~~~~~~~s~s~~s~~~~~~~~~g~~~~~~~~~~i~v~~~~~~~~~ 164 (528)
.++..-|+|...+|+.+.+.+. |.+.|--++|+| .++++++++. |+.+.+|+..+.-....+++....
T Consensus 81 ~rs~llrv~~L~tgk~irswKa~He~Pvi~ma~~~-~g~LlAtgga----------D~~v~VWdi~~~~~th~fkG~gGv 149 (775)
T KOG0319|consen 81 SRSQLLRVWSLPTGKLIRSWKAIHEAPVITMAFDP-TGTLLATGGA----------DGRVKVWDIKNGYCTHSFKGHGGV 149 (775)
T ss_pred eccceEEEEEcccchHhHhHhhccCCCeEEEEEcC-CCceEEeccc----------cceEEEEEeeCCEEEEEecCCCce
Confidence 5678899999999999999998 999999999999 4577777775 999999999988888888775444
Q ss_pred --------CCCCCeEEEEecCCcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeCCceEE
Q 009715 165 --------AKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLY 236 (528)
Q Consensus 165 --------~~~~~~l~~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~ 236 (528)
+.....|++|..|+.|++||++... . +.+ ....|.+.|++++|.+++. .+++++.|..+.
T Consensus 150 Vssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~-----t---cl~---~~~~H~S~vtsL~~~~d~~-~~ls~~RDkvi~ 217 (775)
T KOG0319|consen 150 VSSLLFHPHWNRWLLASGATDGTVRVWNLNDKR-----T---CLH---TMILHKSAVTSLAFSEDSL-ELLSVGRDKVII 217 (775)
T ss_pred EEEEEeCCccchhheeecCCCceEEEEEcccCc-----h---HHH---HHHhhhhheeeeeeccCCc-eEEEeccCcEEE
Confidence 3444668999999999999998521 1 011 1123999999999999998 899999999999
Q ss_pred EEEcCCCCCCCCcccccccc-------------ceeEEe----------ccC----------------------------
Q 009715 237 VYEKSKDGAGDSSFPVIKDQ-------------TQFSVA----------HPR---------------------------- 265 (528)
Q Consensus 237 vwd~~~~~~~~~~~~~~~~~-------------~~~~~~----------~~~---------------------------- 265 (528)
|||+... ......|..+.- ..+... ...
T Consensus 218 vwd~~~~-~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~ 296 (775)
T KOG0319|consen 218 VWDLVQY-KKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQL 296 (775)
T ss_pred Eeehhhh-hhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCce
Confidence 9998541 111111111000 000000 000
Q ss_pred -------------CCCCCCeEEEeecCCCeEEEEEC-CCCCEEEEEeCCCcEEEEecCCceEEeeecccCCCeEEEEEcC
Q 009715 266 -------------YSKSNPIARWHICQGSINSIAFS-TDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSM 331 (528)
Q Consensus 266 -------------~~~~~~~~~~~~h~~~v~~l~~s-pdg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp 331 (528)
......++.+-+..+.|.+|+|- |+.++||+++..+.+|+|++.+..+. .+.+|...|.+++...
T Consensus 297 l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~ 375 (775)
T KOG0319|consen 297 LLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWS 375 (775)
T ss_pred EEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecc
Confidence 00111111222345788999985 57789999999999999999877765 7789999999999666
Q ss_pred CCCEEEEEeCCCcEEEEECCCC----eEEEEeecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccC
Q 009715 332 DGKYILTGGEDDLVQVWSMEDR----KVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEM 407 (528)
Q Consensus 332 ~g~~l~sg~~dg~v~vwd~~~~----~~~~~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~ 407 (528)
+|.+|++|+.|..+++|.++.+ .++....+|.+.|.+|+++. .+. .+|+++|.|++|++|++..
T Consensus 376 ~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~-------~~a-----sffvsvS~D~tlK~W~l~~ 443 (775)
T KOG0319|consen 376 SGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSK-------LGA-----SFFVSVSQDCTLKLWDLPK 443 (775)
T ss_pred cCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecc-------cCc-----cEEEEecCCceEEEecCCC
Confidence 7889999999999999988543 35666779999999999976 442 6899999999999999987
Q ss_pred CeEEEE----------eecCCCCCCCeecCCCCCccCCceeeeecCCCCceeeecCCCCceEEeecCCCCeEEEEEeCC-
Q 009715 408 DEIVVP----------LRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE- 476 (528)
Q Consensus 408 ~~~~~~----------~~~~~~~~~~~~s~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~~s~d- 476 (528)
.+.... ..+...+.++++++. |..+++++.|....+|+++....+.++.+|+..|.++.|++.
T Consensus 444 s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~n------dkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~d 517 (775)
T KOG0319|consen 444 SKETAFPIVLTCRYTERAHDKDINCVAIAPN------DKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKND 517 (775)
T ss_pred cccccccceehhhHHHHhhcccccceEecCC------CceEEecccccceeeecccCceEEEEeeCCccceEEEEecccc
Confidence 332111 113345666776665 488899999999999999999999999999999999999995
Q ss_pred -eEEEEECCCeEEEEeCCCCc--cccCCCccce--EEEccCCceEEEeeeecc
Q 009715 477 -SVLTVCREGHIKIWMRPGVA--ESQSSSSETV--LSTSSKDKPLLSSKVVTS 524 (528)
Q Consensus 477 -~l~t~s~Dg~i~iW~~~~~~--~~~~~~~~~v--l~~spd~~~l~s~~~~gs 524 (528)
.++|+|.|++||||.+.... ....+|...| .+|-.+|+.|+|+..+|-
T Consensus 518 q~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGl 570 (775)
T KOG0319|consen 518 QLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGL 570 (775)
T ss_pred ceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCc
Confidence 59999999999999999876 3445799999 677899999999988874
No 18
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.3e-32 Score=274.94 Aligned_cols=254 Identities=19% Similarity=0.256 Sum_probs=214.2
Q ss_pred cCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCcccccccccee-------EEeccCCCCCCCeEEEeecCCC
Q 009715 209 NNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQF-------SVAHPRYSKSNPIARWHICQGS 281 (528)
Q Consensus 209 h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~h~~~ 281 (528)
....++|..|++++. +||.|..|-.|++|.+.... ...++........ .............+.+.+|+++
T Consensus 377 t~~~v~ca~fSddss-mlA~Gf~dS~i~~~Sl~p~k--l~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GP 453 (707)
T KOG0263|consen 377 TYQGVTCAEFSDDSS-MLACGFVDSSVRVWSLTPKK--LKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGP 453 (707)
T ss_pred cCCcceeEeecCCcc-hhhccccccEEEEEecchhh--hccccchhhhccccccccchhhhhccccCCceeEEeecCCCc
Confidence 345799999999999 99999999999999997421 1111110000000 0111112334456679999999
Q ss_pred eEEEEECCCCCEEEEEeCCCcEEEEecCCceEEeeecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeec
Q 009715 282 INSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEG 361 (528)
Q Consensus 282 v~~l~~spdg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~~~~~~~~ 361 (528)
|+.+.|+|+.++|++++.|+++|+|.+.+..++..+++|..+|.++.|+|.|-|+|+++.|++.++|.....++++.+.+
T Consensus 454 Vyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifag 533 (707)
T KOG0263|consen 454 VYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAG 533 (707)
T ss_pred eeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEEEeecCCCCCCCeecCCCCCccCCceeeee
Q 009715 362 HNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVG 441 (528)
Q Consensus 362 h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~d~~~~~g 441 (528)
|-+.|.|+.|+| +. .++++||.|.+||+||+.+|..++.+
T Consensus 534 hlsDV~cv~FHP-------Ns------~Y~aTGSsD~tVRlWDv~~G~~VRiF--------------------------- 573 (707)
T KOG0263|consen 534 HLSDVDCVSFHP-------NS------NYVATGSSDRTVRLWDVSTGNSVRIF--------------------------- 573 (707)
T ss_pred cccccceEEECC-------cc------cccccCCCCceEEEEEcCCCcEEEEe---------------------------
Confidence 999999999999 87 79999999999999999998876543
Q ss_pred cCCCCceeeecCCCCceEEeecCCCCeEEEEEeCCe--EEEEECCCeEEEEeCCCCcc--ccCCCccce--EEEccCCce
Q 009715 442 TLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWMRPGVAE--SQSSSSETV--LSTSSKDKP 515 (528)
Q Consensus 442 ~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~~s~d~--l~t~s~Dg~i~iW~~~~~~~--~~~~~~~~v--l~~spd~~~ 515 (528)
.||.++|.+|+|+|++ |++|+.||.|++||+.++.. ...+|.+.| +.||.||..
T Consensus 574 --------------------~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~v 633 (707)
T KOG0263|consen 574 --------------------TGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNV 633 (707)
T ss_pred --------------------cCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCE
Confidence 4799999999999985 99999999999999998764 344787777 999999999
Q ss_pred EEEeeeeccc
Q 009715 516 LLSSKVVTSS 525 (528)
Q Consensus 516 l~s~~~~gs~ 525 (528)
||+++.++++
T Consensus 634 Lasgg~DnsV 643 (707)
T KOG0263|consen 634 LASGGADNSV 643 (707)
T ss_pred EEecCCCCeE
Confidence 9999888664
No 19
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=5.8e-32 Score=246.63 Aligned_cols=275 Identities=17% Similarity=0.246 Sum_probs=228.0
Q ss_pred cccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEE
Q 009715 207 SVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIA 286 (528)
Q Consensus 207 ~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 286 (528)
.+|.+.|.|+++.|.++ +|++|+.|++++|||+.++ .....+.+|-..|..++
T Consensus 148 ~gHlgWVr~vavdP~n~-wf~tgs~DrtikIwDlatg--------------------------~LkltltGhi~~vr~va 200 (460)
T KOG0285|consen 148 SGHLGWVRSVAVDPGNE-WFATGSADRTIKIWDLATG--------------------------QLKLTLTGHIETVRGVA 200 (460)
T ss_pred hhccceEEEEeeCCCce-eEEecCCCceeEEEEcccC--------------------------eEEEeecchhheeeeee
Confidence 46999999999999988 9999999999999999873 34456677889999999
Q ss_pred ECCCCCEEEEEeCCCcEEEEecCCceEEeeecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCe
Q 009715 287 FSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWV 366 (528)
Q Consensus 287 ~spdg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~~~~~~~~h~~~V 366 (528)
+|+...||++++.|+.|+.||++..+.++.+.+|-..|.|++.+|.-..|++|+.|..++|||+++...+..+.||..+|
T Consensus 201 vS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V 280 (460)
T KOG0285|consen 201 VSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPV 280 (460)
T ss_pred ecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEEEeecCC-CCCCCeecCCCCCccCCceeeeecCCC
Q 009715 367 SGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGP-LGGSPTFSTGSQSAHWDNVCPVGTLQP 445 (528)
Q Consensus 367 ~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~d~~~~~g~~~~ 445 (528)
..|.+.|. |+ .+++|+.|++|++||++.++....+.++. .+.+++..+.- ......-..
T Consensus 281 ~~V~~~~~------dp-------qvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e-------~~fASas~d 340 (460)
T KOG0285|consen 281 ASVMCQPT------DP-------QVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKE-------NLFASASPD 340 (460)
T ss_pred eeEEeecC------CC-------ceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCch-------hhhhccCCc
Confidence 99999983 54 79999999999999999999888876642 33444443332 111222234
Q ss_pred CceeeecCCCCceEEeecCCCCeEEEEEeCCe-EEEEECCCeEEEEeCCCCccccCC----------Cccce--EEEccC
Q 009715 446 APSMRDVPKLSPLVAHRVHTEPLSGLIFTQES-VLTVCREGHIKIWMRPGVAESQSS----------SSETV--LSTSSK 512 (528)
Q Consensus 446 ~~~~~d~~~~~~~~~~~~h~~~V~~l~~s~d~-l~t~s~Dg~i~iW~~~~~~~~~~~----------~~~~v--l~~spd 512 (528)
.+..|+++.+..+..+.+|.+-|++++...|+ +++|+..|.+.+||..++...+.. .+.+| ..|.-.
T Consensus 341 nik~w~~p~g~f~~nlsgh~~iintl~~nsD~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDkt 420 (460)
T KOG0285|consen 341 NIKQWKLPEGEFLQNLSGHNAIINTLSVNSDGVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKT 420 (460)
T ss_pred cceeccCCccchhhccccccceeeeeeeccCceEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeeccc
Confidence 57889999999999999999999999999886 889999999999998776533221 22344 344667
Q ss_pred CceEEEeeee--cccccC
Q 009715 513 DKPLLSSKVV--TSSYRQ 528 (528)
Q Consensus 513 ~~~l~s~~~~--gs~~~~ 528 (528)
|-.|+++..+ .-.|||
T Consensus 421 g~rlit~eadKtIk~~ke 438 (460)
T KOG0285|consen 421 GSRLITGEADKTIKMYKE 438 (460)
T ss_pred CceEEeccCCcceEEEec
Confidence 7888888655 444543
No 20
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=2.4e-30 Score=247.02 Aligned_cols=424 Identities=19% Similarity=0.253 Sum_probs=288.4
Q ss_pred eeecCcceEEEEEeecCCCCccccccCceeeEEEeecccCCCCCCCCCCCCCCcccCcchhhhhhhhhcCCCCCcee--e
Q 009715 26 YFKTPEGRYKLHYEKTYPSGLLHYAHGKTVTQATLAHLKEKPAPSTPTAPPSSFSASSGVVRSAAAKLLGTGNGSRT--L 103 (528)
Q Consensus 26 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~--~ 103 (528)
.|.=+.|+.-.-.+...|.....|.. +-.++|+|+. +|+..=-++| -.+...|+|+......+ .
T Consensus 32 ~ilY~nGksv~ir~i~~~~~~~iYtE--H~~~vtVAky-----------SPsG~yiASG-D~sG~vRIWdtt~~~hiLKn 97 (603)
T KOG0318|consen 32 NILYTNGKSVIIRNIDNPASVDIYTE--HAHQVTVAKY-----------SPSGFYIASG-DVSGKVRIWDTTQKEHILKN 97 (603)
T ss_pred eEEEeCCCEEEEEECCCccceeeecc--ccceeEEEEe-----------CCCceEEeec-CCcCcEEEEeccCcceeeee
Confidence 35556677766666666666666655 2345666664 2222223344 44667777777662222 3
Q ss_pred ccCCCCCCCccccCCcccCCcccCCCCC----------------------------------CcceeeeCCCccEEEEeC
Q 009715 104 GFGGGNGGSKSISGSSRIGSLGASSSST----------------------------------SMTNTNFDGKGTYIIFNV 149 (528)
Q Consensus 104 sf~gh~~~v~~v~~s~~~~~~~~s~s~~----------------------------------s~~~~~~~~~g~~~~~~~ 149 (528)
.|.--.|.|..++++...-++.+.+-.. +-..++.+.|+.+.+|..
T Consensus 98 ef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeG 177 (603)
T KOG0318|consen 98 EFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEG 177 (603)
T ss_pred eeeecccccccceeCCCCcEEEEEecCccceeEEEEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeC
Confidence 3444555566665555222333333211 111223333555555543
Q ss_pred CCcEEEEeCCCCCCC------CCCCCeEEEEecCCcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCC
Q 009715 150 GDAIFISDLNSQDKD------AKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGD 223 (528)
Q Consensus 150 ~~~i~v~~~~~~~~~------~~~~~~l~~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~ 223 (528)
..--+-..++.+.+. +|||..+++.+.||+|++||=.+ +++ .....+...|++.|.+++|+||+.
T Consensus 178 PPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGkt-----ge~----vg~l~~~~aHkGsIfalsWsPDs~ 248 (603)
T KOG0318|consen 178 PPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKT-----GEK----VGELEDSDAHKGSIFALSWSPDST 248 (603)
T ss_pred CCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCC-----ccE----EEEecCCCCccccEEEEEECCCCc
Confidence 222222333333333 89999999999999999999655 111 112223456999999999999999
Q ss_pred cEEEEEeCCceEEEEEcCCCCCCCCccccccc--cce----------eEEec------cCCCCCCCeEEEeecCCCeEEE
Q 009715 224 GAFVVGHADGNLYVYEKSKDGAGDSSFPVIKD--QTQ----------FSVAH------PRYSKSNPIARWHICQGSINSI 285 (528)
Q Consensus 224 ~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~--~~~----------~~~~~------~~~~~~~~~~~~~~h~~~v~~l 285 (528)
.|++++.|.+++|||+.+. .....++.... ..+ ..+.. -......+.+.+.+|...|+++
T Consensus 249 -~~~T~SaDkt~KIWdVs~~-slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaL 326 (603)
T KOG0318|consen 249 -QFLTVSADKTIKIWDVSTN-SLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITAL 326 (603)
T ss_pred -eEEEecCCceEEEEEeecc-ceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEE
Confidence 8999999999999999873 33333222211 111 11100 1113344888999999999999
Q ss_pred EECCCCCEEEEEeCCCcEEEEecCCceE-----------Eeee-------------------------------------
Q 009715 286 AFSTDGTYLATVGRDGYLRVFDYSKEQL-----------ICGG------------------------------------- 317 (528)
Q Consensus 286 ~~spdg~~l~s~~~dg~i~vwd~~~~~~-----------~~~~------------------------------------- 317 (528)
..+||+++|++|+.||.|.-||..++.. +..+
T Consensus 327 tv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~ 406 (603)
T KOG0318|consen 327 TVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGS 406 (603)
T ss_pred EEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCC
Confidence 9999999999999999999999865321 0000
Q ss_pred -------------------------ccc--------CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe--EEEEeecC
Q 009715 318 -------------------------KSY--------YGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRK--VVAWGEGH 362 (528)
Q Consensus 318 -------------------------~~~--------~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~--~~~~~~~h 362 (528)
+.+ .-...+++++|++..+++|+.|+.|+||.+.... ....+..|
T Consensus 407 QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h 486 (603)
T KOG0318|consen 407 QPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEH 486 (603)
T ss_pred CceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecc
Confidence 000 0123678999999999999999999999998754 33345579
Q ss_pred CCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEEE-ee-cCCCCCCCeecCCCCCccCCceeee
Q 009715 363 NSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVP-LR-RGPLGGSPTFSTGSQSAHWDNVCPV 440 (528)
Q Consensus 363 ~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~-~~-~~~~~~~~~~s~~~~~~~~d~~~~~ 440 (528)
..+|++|+|+| |+ .+|+++...+.+.+||+.+.+.... .. +...+.+++++|+. ..++.
T Consensus 487 ~a~iT~vaySp-------d~------~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n------~~vAT 547 (603)
T KOG0318|consen 487 RAAITDVAYSP-------DG------AYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNN------KLVAT 547 (603)
T ss_pred cCCceEEEECC-------CC------cEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCc------eEEEe
Confidence 99999999999 99 7999999999999999998876322 11 33567888898887 57899
Q ss_pred ecCCCCceeeecCCCCceE-EeecCCCCeEEEEEeCC-eEEEEECCCeEEEEeCC
Q 009715 441 GTLQPAPSMRDVPKLSPLV-AHRVHTEPLSGLIFTQE-SVLTVCREGHIKIWMRP 493 (528)
Q Consensus 441 g~~~~~~~~~d~~~~~~~~-~~~~h~~~V~~l~~s~d-~l~t~s~Dg~i~iW~~~ 493 (528)
|++|..+.+|++.+..... ....|...|+.|+|-.+ .|++.+.|..||+|+++
T Consensus 548 GSlDt~Viiysv~kP~~~i~iknAH~~gVn~v~wlde~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 548 GSLDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWLDESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred ccccceEEEEEccChhhheEeccccccCceeEEEecCceEEeccCcceeEEeccc
Confidence 9999999999998765443 34479999999999886 59999999999999975
No 21
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.8e-31 Score=251.66 Aligned_cols=327 Identities=15% Similarity=0.164 Sum_probs=262.3
Q ss_pred CCCCCCCccccCCcccCCcccCCCCCCcceeeeCCCccEEEEeCCCcEEEEeCCCC------CCC----------CCCCC
Q 009715 106 GGGNGGSKSISGSSRIGSLGASSSSTSMTNTNFDGKGTYIIFNVGDAIFISDLNSQ------DKD----------AKDGH 169 (528)
Q Consensus 106 ~gh~~~v~~v~~s~~~~~~~~s~s~~s~~~~~~~~~g~~~~~~~~~~i~v~~~~~~------~~~----------~~~~~ 169 (528)
.+|...|.+++++|-...++++++.++.+.+.-- .++........+++.. ... +.+|.
T Consensus 175 l~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l------~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~ 248 (524)
T KOG0273|consen 175 LRHESEVFICAWNPLRDGLLASGSGDSTARIWNL------LENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGT 248 (524)
T ss_pred ccCCCceEEEecCchhhhhhhccCCccceeeeee------hhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCC
Confidence 3499999999999966678888886333322111 0111222222222211 110 67899
Q ss_pred eEEEEecCCcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCc
Q 009715 170 DLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSS 249 (528)
Q Consensus 170 ~l~~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~ 249 (528)
.|++|..+|.+++|+....+ ......|+++|.+++|+..|. +|++++.|+++.+||..++
T Consensus 249 ~LatG~~~G~~riw~~~G~l-------------~~tl~~HkgPI~slKWnk~G~-yilS~~vD~ttilwd~~~g------ 308 (524)
T KOG0273|consen 249 LLATGSEDGEARIWNKDGNL-------------ISTLGQHKGPIFSLKWNKKGT-YILSGGVDGTTILWDAHTG------ 308 (524)
T ss_pred eEEEeecCcEEEEEecCchh-------------hhhhhccCCceEEEEEcCCCC-EEEeccCCccEEEEeccCc------
Confidence 99999999999999987521 111223999999999999999 9999999999999998652
Q ss_pred cccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCCCCEEEEEeCCCcEEEEecCCceEEeeecccCCCeEEEEE
Q 009715 250 FPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAW 329 (528)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~ 329 (528)
...+.+..|..+-..+.|-.+. .+++++.|+.|+|+.+....++.++.+|.+.|.++.|
T Consensus 309 --------------------~~~q~f~~~s~~~lDVdW~~~~-~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~ 367 (524)
T KOG0273|consen 309 --------------------TVKQQFEFHSAPALDVDWQSND-EFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKW 367 (524)
T ss_pred --------------------eEEEeeeeccCCccceEEecCc-eEeecCCCceEEEEEecCCCcceeeecccCceEEEEE
Confidence 1233444556666778887653 6899999999999999999999999999999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCeEEEEEecCCCCCCCCCCcc---ceeEEEEEEeCCCeEEEEEcc
Q 009715 330 SMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAE---TVMYRFGSVGQDTRLLLWDLE 406 (528)
Q Consensus 330 sp~g~~l~sg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~v~f~p~~~~~~~dg~~~---~~~~~l~s~s~D~~i~lwd~~ 406 (528)
+|.|.+|++++.|++++||++....+...+++|...|..+.|+| +|... .....+++++.|++|++||+.
T Consensus 368 n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp-------~g~v~~n~~~~~~l~sas~dstV~lwdv~ 440 (524)
T KOG0273|consen 368 NPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSP-------TGPVTSNPNMNLMLASASFDSTVKLWDVE 440 (524)
T ss_pred CCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecC-------CCCccCCCcCCceEEEeecCCeEEEEEcc
Confidence 99999999999999999999999999999999999999999999 44211 111579999999999999999
Q ss_pred CCeEEEEe-ecCCCCCCCeecCCCCCccCCceeeeecCCCCceeeecCCCCceEEeecCCCCeEEEEEeCCe--EEEEEC
Q 009715 407 MDEIVVPL-RRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCR 483 (528)
Q Consensus 407 ~~~~~~~~-~~~~~~~~~~~s~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~~s~d~--l~t~s~ 483 (528)
.+.++..| ++..++.+++|++++ ..++.|++++.+.+|+.++.+.++.+.+ .+.|..|.|+.++ |..+-.
T Consensus 441 ~gv~i~~f~kH~~pVysvafS~~g------~ylAsGs~dg~V~iws~~~~~l~~s~~~-~~~Ifel~Wn~~G~kl~~~~s 513 (524)
T KOG0273|consen 441 SGVPIHTLMKHQEPVYSVAFSPNG------RYLASGSLDGCVHIWSTKTGKLVKSYQG-TGGIFELCWNAAGDKLGACAS 513 (524)
T ss_pred CCceeEeeccCCCceEEEEecCCC------cEEEecCCCCeeEeccccchheeEeecC-CCeEEEEEEcCCCCEEEEEec
Confidence 99999999 677899999999998 7889999999999999999999998876 4669999999965 777779
Q ss_pred CCeEEEEeCC
Q 009715 484 EGHIKIWMRP 493 (528)
Q Consensus 484 Dg~i~iW~~~ 493 (528)
|+.+++-|+.
T Consensus 514 d~~vcvldlr 523 (524)
T KOG0273|consen 514 DGSVCVLDLR 523 (524)
T ss_pred CCCceEEEec
Confidence 9999998864
No 22
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1.7e-31 Score=244.53 Aligned_cols=326 Identities=13% Similarity=0.138 Sum_probs=271.0
Q ss_pred eeeccCCCCCCCccccCCcccCCcccCCCCCCcceeeeCCCccEEEEeCCCcEEEEeCCCCCCC------CCCCCeEEEE
Q 009715 101 RTLGFGGGNGGSKSISGSSRIGSLGASSSSTSMTNTNFDGKGTYIIFNVGDAIFISDLNSQDKD------AKDGHDLLIG 174 (528)
Q Consensus 101 ~~~sf~gh~~~v~~v~~s~~~~~~~~s~s~~s~~~~~~~~~g~~~~~~~~~~i~v~~~~~~~~~------~~~~~~l~~g 174 (528)
.+.+|..|.+.|-+|+.+| ..++.++++. |..-.+|.....-....+..+.-. +.++.+|++|
T Consensus 56 S~~tF~~H~~svFavsl~P-~~~l~aTGGg----------DD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATG 124 (399)
T KOG0296|consen 56 SLVTFDKHTDSVFAVSLHP-NNNLVATGGG----------DDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATG 124 (399)
T ss_pred ceeehhhcCCceEEEEeCC-CCceEEecCC----------CceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEec
Confidence 3478999999999999999 6677887775 666667776665566666554333 8899999999
Q ss_pred ecCCcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCcccccc
Q 009715 175 LNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIK 254 (528)
Q Consensus 175 ~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~ 254 (528)
..+|.|.||...++... . .+ . ..-..+.-+.|+|.+. +|+.|+.||.|.+|.+.+.
T Consensus 125 dmsG~v~v~~~stg~~~----~--~~--~----~e~~dieWl~WHp~a~-illAG~~DGsvWmw~ip~~----------- 180 (399)
T KOG0296|consen 125 DMSGKVLVFKVSTGGEQ----W--KL--D----QEVEDIEWLKWHPRAH-ILLAGSTDGSVWMWQIPSQ----------- 180 (399)
T ss_pred CCCccEEEEEcccCceE----E--Ee--e----cccCceEEEEeccccc-EEEeecCCCcEEEEECCCc-----------
Confidence 99999999998873210 0 01 0 1345688899999998 9999999999999999852
Q ss_pred ccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCCCCEEEEEeCCCcEEEEecCCceEEeeeccc-CCCeEEEEEcCCC
Q 009715 255 DQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSY-YGALLCCAWSMDG 333 (528)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~-~~~v~~l~~sp~g 333 (528)
...+.+.+|+.++++-.|.|||++++++..||+|++||+++++++..+..- .....++.++.++
T Consensus 181 ---------------~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~ 245 (399)
T KOG0296|consen 181 ---------------ALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAG 245 (399)
T ss_pred ---------------ceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCcccccccc
Confidence 456788899999999999999999999999999999999999999887642 3457789999999
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEee--------cCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEc
Q 009715 334 KYILTGGEDDLVQVWSMEDRKVVAWGE--------GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDL 405 (528)
Q Consensus 334 ~~l~sg~~dg~v~vwd~~~~~~~~~~~--------~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~ 405 (528)
..++.|+.++.+++-+..+++.+.... .+...+.+|.|.|. . ..+.+.+.|+.||+|.|||+
T Consensus 246 ~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~-------s---s~lpL~A~G~vdG~i~iyD~ 315 (399)
T KOG0296|consen 246 STLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPS-------S---SKLPLAACGSVDGTIAIYDL 315 (399)
T ss_pred ceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhccc-------c---cccchhhcccccceEEEEec
Confidence 999999999999999999998887766 46677788888772 1 12258899999999999999
Q ss_pred cCCeEEEEeecCCCCCCCeecCCCCCccCCceeeeecCCCCceeeecCCCCceEEeecCCCCeEEEEEeCC--eEEEEEC
Q 009715 406 EMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE--SVLTVCR 483 (528)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~~s~d--~l~t~s~ 483 (528)
...+.+....+...+..+.|-. +..+.+++.++.++.||.++++.+..+.+|...|.+++.+|+ .++|+|.
T Consensus 316 a~~~~R~~c~he~~V~~l~w~~-------t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~ 388 (399)
T KOG0296|consen 316 AASTLRHICEHEDGVTKLKWLN-------TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSD 388 (399)
T ss_pred ccchhheeccCCCceEEEEEcC-------cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecC
Confidence 9999998888877777777644 256688899999999999999999999999999999999997 4999999
Q ss_pred CCeEEEEeCC
Q 009715 484 EGHIKIWMRP 493 (528)
Q Consensus 484 Dg~i~iW~~~ 493 (528)
|++.+|++++
T Consensus 389 D~~a~VF~v~ 398 (399)
T KOG0296|consen 389 DNTALVFEVP 398 (399)
T ss_pred CCeEEEEecC
Confidence 9999999876
No 23
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.2e-32 Score=248.29 Aligned_cols=289 Identities=19% Similarity=0.276 Sum_probs=244.2
Q ss_pred cCCCCCceeeccCCCCCCCccccCCcccCCcccCCCCCCcceeeeCCCccEEEEeCCCcEEEEeCCCCCCC------CCC
Q 009715 94 LGTGNGSRTLGFGGGNGGSKSISGSSRIGSLGASSSSTSMTNTNFDGKGTYIIFNVGDAIFISDLNSQDKD------AKD 167 (528)
Q Consensus 94 ~~~~~g~~~~sf~gh~~~v~~v~~s~~~~~~~~s~s~~s~~~~~~~~~g~~~~~~~~~~i~v~~~~~~~~~------~~~ 167 (528)
|.....-+ ....||...|+.+-|.| .-.+.++++ .++.+.+|+..+.-+...++..... +..
T Consensus 94 wipRp~l~-~~l~g~r~~vt~v~~hp-~~~~v~~as----------~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~ 161 (406)
T KOG0295|consen 94 WIPRPNLV-QKLAGHRSSVTRVIFHP-SEALVVSAS----------EDATIKVFDTETGELERSLRGHTDSVFDISFDAS 161 (406)
T ss_pred cCCCCCch-hhhhccccceeeeeecc-CceEEEEec----------CCceEEEEEccchhhhhhhhccccceeEEEEecC
Confidence 44443333 66789999999999988 333344443 4889999988876666666655444 678
Q ss_pred CCeEEEEecCCcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCC
Q 009715 168 GHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGD 247 (528)
Q Consensus 168 ~~~l~~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~ 247 (528)
|++|+++++|=.+.+||+.+.. .-.+....|...|.+++|-|.|+ ++++++.|.+|+.|++.+
T Consensus 162 Gk~l~tcSsDl~~~LWd~~~~~-----------~c~ks~~gh~h~vS~V~f~P~gd-~ilS~srD~tik~We~~t----- 224 (406)
T KOG0295|consen 162 GKYLATCSSDLSAKLWDFDTFF-----------RCIKSLIGHEHGVSSVFFLPLGD-HILSCSRDNTIKAWECDT----- 224 (406)
T ss_pred ccEEEecCCccchhheeHHHHH-----------HHHHHhcCcccceeeEEEEecCC-eeeecccccceeEEeccc-----
Confidence 8999999999889999998621 11112223888999999999998 999999999999999987
Q ss_pred CccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCCCCEEEEEeCCCcEEEEecCCceEEeeecccCCCeEEE
Q 009715 248 SSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCC 327 (528)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l 327 (528)
.-.++.+.+|..-|..++.+.||.++|+++.|..|++|-+.++++...++.|.-+|.|+
T Consensus 225 ---------------------g~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci 283 (406)
T KOG0295|consen 225 ---------------------GYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECI 283 (406)
T ss_pred ---------------------ceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEE
Confidence 24677788888999999999999999999999999999999999999999999999999
Q ss_pred EEcCC---------------CCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCeEEEEEecCCCCCCCCCCccceeEEEE
Q 009715 328 AWSMD---------------GKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFG 392 (528)
Q Consensus 328 ~~sp~---------------g~~l~sg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~ 392 (528)
+|-|. ++++++++.|++|++||+.++.++.++.+|.++|..++|+| .| ++|+
T Consensus 284 ~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p-------~G------kyi~ 350 (406)
T KOG0295|consen 284 AWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSP-------GG------KYIL 350 (406)
T ss_pred EecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcC-------CC------eEEE
Confidence 99873 25899999999999999999999999999999999999999 99 8999
Q ss_pred EEeCCCeEEEEEccCCeEEEEeecCCCCCCCeecCCCCCccCCceeeeecCCCCceeeecCCCCceEEeecCCCCeEEEE
Q 009715 393 SVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLI 472 (528)
Q Consensus 393 s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~ 472 (528)
++.+|+++++||++.+++...+. .|..-|+++.
T Consensus 351 ScaDDktlrvwdl~~~~cmk~~~-----------------------------------------------ah~hfvt~lD 383 (406)
T KOG0295|consen 351 SCADDKTLRVWDLKNLQCMKTLE-----------------------------------------------AHEHFVTSLD 383 (406)
T ss_pred EEecCCcEEEEEeccceeeeccC-----------------------------------------------CCcceeEEEe
Confidence 99999999999999998876553 4788899999
Q ss_pred EeCC--eEEEEECCCeEEEEeC
Q 009715 473 FTQE--SVLTVCREGHIKIWMR 492 (528)
Q Consensus 473 ~s~d--~l~t~s~Dg~i~iW~~ 492 (528)
|+.+ +++||+-|.++++|..
T Consensus 384 fh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 384 FHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred cCCCCceEEeccccceeeeeec
Confidence 9985 6999999999999974
No 24
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=2.7e-31 Score=231.33 Aligned_cols=265 Identities=21% Similarity=0.326 Sum_probs=209.3
Q ss_pred hhhhhhcCCCCCceeeccCCCCCCCccccCCcccCCcccCCCCCCcceeeeCCCccEEEEeC--CCcEEEEeCCCCCCC-
Q 009715 88 SAAAKLLGTGNGSRTLGFGGGNGGSKSISGSSRIGSLGASSSSTSMTNTNFDGKGTYIIFNV--GDAIFISDLNSQDKD- 164 (528)
Q Consensus 88 ~~~~~~~~~~~g~~~~sf~gh~~~v~~v~~s~~~~~~~~s~s~~s~~~~~~~~~g~~~~~~~--~~~i~v~~~~~~~~~- 164 (528)
.-+.|+|++.+|...+++.--.+.|+.++..| +...++.+.. -.+..|+. ++.-.+..++.+.+.
T Consensus 19 DhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTp-dk~~LAaa~~-----------qhvRlyD~~S~np~Pv~t~e~h~kNV 86 (311)
T KOG0315|consen 19 DHTIRFWQALTGICSRTIQHPDSQVNRLEITP-DKKDLAAAGN-----------QHVRLYDLNSNNPNPVATFEGHTKNV 86 (311)
T ss_pred cceeeeeehhcCeEEEEEecCccceeeEEEcC-CcchhhhccC-----------CeeEEEEccCCCCCceeEEeccCCce
Confidence 45789999999999999966667799999988 4444444442 23333332 222223333333222
Q ss_pred -----CCCCCeEEEEecCCcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeCCceEEEEE
Q 009715 165 -----AKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYE 239 (528)
Q Consensus 165 -----~~~~~~l~~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd 239 (528)
..+|+.+++|+.||+++|||++. +. .++.+. |..+|+++..+|+.. .|++|..+|.|+|||
T Consensus 87 taVgF~~dgrWMyTgseDgt~kIWdlR~--------~~----~qR~~~-~~spVn~vvlhpnQt-eLis~dqsg~irvWD 152 (311)
T KOG0315|consen 87 TAVGFQCDGRWMYTGSEDGTVKIWDLRS--------LS----CQRNYQ-HNSPVNTVVLHPNQT-ELISGDQSGNIRVWD 152 (311)
T ss_pred EEEEEeecCeEEEecCCCceEEEEeccC--------cc----cchhcc-CCCCcceEEecCCcc-eEEeecCCCcEEEEE
Confidence 78999999999999999999987 11 112221 789999999999988 899999999999999
Q ss_pred cCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCCCCEEEEEeCCCcEEEEecCCc------eE
Q 009715 240 KSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKE------QL 313 (528)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~~~dg~i~vwd~~~~------~~ 313 (528)
+..+.-.....|. ...+|.++...|||.+|+.+...|.+++|++-.. ++
T Consensus 153 l~~~~c~~~liPe-------------------------~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P 207 (311)
T KOG0315|consen 153 LGENSCTHELIPE-------------------------DDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEP 207 (311)
T ss_pred ccCCccccccCCC-------------------------CCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceE
Confidence 9864322222221 1257889999999999999999999999998654 45
Q ss_pred EeeecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC-eEEEEeecCCCCeEEEEEecCCCCCCCCCCccceeEEEE
Q 009715 314 ICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDR-KVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFG 392 (528)
Q Consensus 314 ~~~~~~~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~-~~~~~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~ 392 (528)
+.+++.|.+.++.+.+|||+++||+++.|.+++||+.+.. +....+++|+.|+...+|+. || .+|+
T Consensus 208 ~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~-------dg------~Ylv 274 (311)
T KOG0315|consen 208 VHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSA-------DG------EYLV 274 (311)
T ss_pred hhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeecc-------Cc------cEEE
Confidence 6778889999999999999999999999999999999987 66778899999999999999 99 7999
Q ss_pred EEeCCCeEEEEEccCCeEEEEeec
Q 009715 393 SVGQDTRLLLWDLEMDEIVVPLRR 416 (528)
Q Consensus 393 s~s~D~~i~lwd~~~~~~~~~~~~ 416 (528)
+++.|+.+++||+..++.++....
T Consensus 275 Tassd~~~rlW~~~~~k~v~qy~g 298 (311)
T KOG0315|consen 275 TASSDHTARLWDLSAGKEVRQYQG 298 (311)
T ss_pred ecCCCCceeecccccCceeeecCC
Confidence 999999999999999987765543
No 25
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=2.2e-33 Score=260.01 Aligned_cols=268 Identities=16% Similarity=0.227 Sum_probs=232.1
Q ss_pred cCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEEC
Q 009715 209 NNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFS 288 (528)
Q Consensus 209 h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 288 (528)
-+..|..+.|.|+|+ .|++|+..|.+.+|+... .+.-...+.|..+|+++.|+
T Consensus 95 vkc~V~~v~WtPeGR-RLltgs~SGEFtLWNg~~--------------------------fnFEtilQaHDs~Vr~m~ws 147 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGR-RLLTGSQSGEFTLWNGTS--------------------------FNFETILQAHDSPVRTMKWS 147 (464)
T ss_pred cccceeeEEEcCCCc-eeEeecccccEEEecCce--------------------------eeHHHHhhhhcccceeEEEc
Confidence 445899999999999 899999999999999753 23334567889999999999
Q ss_pred CCCCEEEEEeCCCcEEEEecCCceEEeeecccC-CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCeE
Q 009715 289 TDGTYLATVGRDGYLRVFDYSKEQLICGGKSYY-GALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVS 367 (528)
Q Consensus 289 pdg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~-~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~~~~~~~~h~~~V~ 367 (528)
+++.++++|+.+|.|++|+.... .++.+..|. ..|++++|+|+...++++++||.|+|||....+....+.+|.-.|.
T Consensus 148 ~~g~wmiSgD~gG~iKyWqpnmn-nVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVk 226 (464)
T KOG0284|consen 148 HNGTWMISGDKGGMIKYWQPNMN-NVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVK 226 (464)
T ss_pred cCCCEEEEcCCCceEEecccchh-hhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcc
Confidence 99999999999999999998744 444555554 8999999999888999999999999999999888888999999999
Q ss_pred EEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEEEeecC-CCCCCCeecCCCCCccCCceeeeecCCCC
Q 009715 368 GVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRG-PLGGSPTFSTGSQSAHWDNVCPVGTLQPA 446 (528)
Q Consensus 368 ~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~d~~~~~g~~~~~ 446 (528)
+++|+|. - .+|++++.|..|++||.+++.|+.++..+ ..+..+.|.+.+ +.+.+++.|..
T Consensus 227 svdWHP~------k-------gLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~------N~Llt~skD~~ 287 (464)
T KOG0284|consen 227 SVDWHPT------K-------GLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNG------NWLLTGSKDQS 287 (464)
T ss_pred eeccCCc------c-------ceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCC------CeeEEccCCce
Confidence 9999993 3 48999999999999999999999988654 456677887776 66788889999
Q ss_pred ceeeecCCCCceEEeecCCCCeEEEEEeC---CeEEEEECCCeEEEEeCCCCc---cccCCCccce--EEEccCCceEEE
Q 009715 447 PSMRDVPKLSPLVAHRVHTEPLSGLIFTQ---ESVLTVCREGHIKIWMRPGVA---ESQSSSSETV--LSTSSKDKPLLS 518 (528)
Q Consensus 447 ~~~~d~~~~~~~~~~~~h~~~V~~l~~s~---d~l~t~s~Dg~i~iW~~~~~~---~~~~~~~~~v--l~~spd~~~l~s 518 (528)
++++|++..+.++++++|+..|+++.|+| +.|.+++.||.|..|.+.... .....|...| |++.|-|..|++
T Consensus 288 ~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~t 367 (464)
T KOG0284|consen 288 CKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILAT 367 (464)
T ss_pred EEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEee
Confidence 99999999999999999999999999999 348999999999999998544 2334677888 888999999999
Q ss_pred eeeec
Q 009715 519 SKVVT 523 (528)
Q Consensus 519 ~~~~g 523 (528)
|+.+-
T Consensus 368 gsnd~ 372 (464)
T KOG0284|consen 368 GSNDR 372 (464)
T ss_pred cCCCc
Confidence 98773
No 26
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1e-31 Score=265.98 Aligned_cols=294 Identities=19% Similarity=0.240 Sum_probs=240.8
Q ss_pred eccCCCCCCCccccCCcccCCcccCCCCCCcceeeeCCCccEEEEeCCCcEEEEeCCCCCCC----CCCCCeEEEEecCC
Q 009715 103 LGFGGGNGGSKSISGSSRIGSLGASSSSTSMTNTNFDGKGTYIIFNVGDAIFISDLNSQDKD----AKDGHDLLIGLNSG 178 (528)
Q Consensus 103 ~sf~gh~~~v~~v~~s~~~~~~~~s~s~~s~~~~~~~~~g~~~~~~~~~~i~v~~~~~~~~~----~~~~~~l~~g~~~G 178 (528)
+.+.||+..|++++++. +..+++|++ .+.+++||....-.+..+...-.. -|.++++++|..+|
T Consensus 367 i~~~GHR~dVRsl~vS~-d~~~~~Sga-----------~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~G 434 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSS-DSILLASGA-----------GESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNG 434 (888)
T ss_pred eeeccchhheeEEEeec-CceeeeecC-----------CCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCC
Confidence 77889999999999998 666777776 488999998766555555554322 78999999999999
Q ss_pred cEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccce
Q 009715 179 DVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQ 258 (528)
Q Consensus 179 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~ 258 (528)
.+.+||+... ........|.+.|+.++.+||+. .+++|+.|.+|++||...... .+.... ..
T Consensus 435 el~vfdlaS~------------~l~Eti~AHdgaIWsi~~~pD~~-g~vT~saDktVkfWdf~l~~~----~~gt~~-k~ 496 (888)
T KOG0306|consen 435 ELQVFDLASA------------SLVETIRAHDGAIWSISLSPDNK-GFVTGSADKTVKFWDFKLVVS----VPGTQK-KV 496 (888)
T ss_pred ceEEEEeehh------------hhhhhhhccccceeeeeecCCCC-ceEEecCCcEEEEEeEEEEec----cCcccc-ee
Confidence 9999999872 12222235999999999999999 899999999999999853111 000000 00
Q ss_pred eEEeccCCCCCCCeEEEeecCCCeEEEEECCCCCEEEEEeCCCcEEEEecCCceEEeeecccCCCeEEEEEcCCCCEEEE
Q 009715 259 FSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILT 338 (528)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s 338 (528)
..+ ...+.++ -...|.|+++||||++|+++--|.+++||-+++-+....+.+|.-+|.|+..+||++++++
T Consensus 497 lsl--------~~~rtLe-l~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivT 567 (888)
T KOG0306|consen 497 LSL--------KHTRTLE-LEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVT 567 (888)
T ss_pred eee--------ccceEEe-ccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEe
Confidence 000 0001111 1478999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCcEEEEECCCCeEEEEeecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEEEeecCC
Q 009715 339 GGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGP 418 (528)
Q Consensus 339 g~~dg~v~vwd~~~~~~~~~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~ 418 (528)
|+.|.+|+||-++-|.|-..+.+|++.|.+|.|.| .. .++++++.|+.|+-||-..-+++
T Consensus 568 gSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P-------~~------~~FFt~gKD~kvKqWDg~kFe~i------- 627 (888)
T KOG0306|consen 568 GSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLP-------KT------HLFFTCGKDGKVKQWDGEKFEEI------- 627 (888)
T ss_pred ccCCCceEEeccccchhhhhhhcccCceeEEEEcc-------cc------eeEEEecCcceEEeechhhhhhh-------
Confidence 99999999999999999999999999999999999 76 79999999999999997765544
Q ss_pred CCCCCeecCCCCCccCCceeeeecCCCCceeeecCCCCceEEeecCCCCeEEEEEeCCe--EEEEECCCeEEEEeCCCC
Q 009715 419 LGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWMRPGV 495 (528)
Q Consensus 419 ~~~~~~~s~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~~s~d~--l~t~s~Dg~i~iW~~~~~ 495 (528)
+.+.+|...|++++.+|++ ++++|.|.+||+|.....
T Consensus 628 ----------------------------------------q~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~tde 666 (888)
T KOG0306|consen 628 ----------------------------------------QKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTDE 666 (888)
T ss_pred ----------------------------------------eeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccCc
Confidence 4455799999999999984 999999999999997653
No 27
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.6e-30 Score=226.56 Aligned_cols=276 Identities=14% Similarity=0.173 Sum_probs=221.6
Q ss_pred cceeeeCCCccEEEEeCCCcEEEEeCCCCCCC------CCCCCeEEEEecCCcEEEEEccccccccccceeeeeeeccCC
Q 009715 133 MTNTNFDGKGTYIIFNVGDAIFISDLNSQDKD------AKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDG 206 (528)
Q Consensus 133 ~~~~~~~~~g~~~~~~~~~~i~v~~~~~~~~~------~~~~~~l~~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 206 (528)
..+++.+-|..+.+|....++....+..++.. .|+++.|+++... .|++||+++....+ + ..+
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S~np~P----v------~t~ 79 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNSNNPNP----V------ATF 79 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCC-eeEEEEccCCCCCc----e------eEE
Confidence 34445556899999998888888777776655 8899999888765 89999999832211 1 112
Q ss_pred cccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEE
Q 009715 207 SVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIA 286 (528)
Q Consensus 207 ~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 286 (528)
..|...|+.+.|..+|+ ++++|++||+++|||++.. . ..+.-.|..+|+++.
T Consensus 80 e~h~kNVtaVgF~~dgr-WMyTgseDgt~kIWdlR~~-~--------------------------~qR~~~~~spVn~vv 131 (311)
T KOG0315|consen 80 EGHTKNVTAVGFQCDGR-WMYTGSEDGTVKIWDLRSL-S--------------------------CQRNYQHNSPVNTVV 131 (311)
T ss_pred eccCCceEEEEEeecCe-EEEecCCCceEEEEeccCc-c--------------------------cchhccCCCCcceEE
Confidence 24889999999999999 9999999999999999861 1 111222458999999
Q ss_pred ECCCCCEEEEEeCCCcEEEEecCCceEEeeecc-cCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC------eEEEEe
Q 009715 287 FSTDGTYLATVGRDGYLRVFDYSKEQLICGGKS-YYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDR------KVVAWG 359 (528)
Q Consensus 287 ~spdg~~l~s~~~dg~i~vwd~~~~~~~~~~~~-~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~------~~~~~~ 359 (528)
.+|+...|++|..+|.|++||+.+..+.+.+.. ....|.++...|||.+|+.+...|.+++|++-.. +++..+
T Consensus 132 lhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~ 211 (311)
T KOG0315|consen 132 LHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKF 211 (311)
T ss_pred ecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhhe
Confidence 999989999999999999999998766555433 3467999999999999999999999999998653 567788
Q ss_pred ecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEEEeecCCCCCCCeecCCCCCccCCceee
Q 009715 360 EGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCP 439 (528)
Q Consensus 360 ~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~d~~~~ 439 (528)
+.|...+....++| |+ ++|++++.|.+++||+.... ..
T Consensus 212 ~ah~~~il~C~lSP-------d~------k~lat~ssdktv~iwn~~~~-~k---------------------------- 249 (311)
T KOG0315|consen 212 QAHNGHILRCLLSP-------DV------KYLATCSSDKTVKIWNTDDF-FK---------------------------- 249 (311)
T ss_pred ecccceEEEEEECC-------CC------cEEEeecCCceEEEEecCCc-ee----------------------------
Confidence 99999999999999 99 89999999999999998765 11
Q ss_pred eecCCCCceeeecCCCCceEEeecCCCCeEEEEEeCC--eEEEEECCCeEEEEeCCCCcccc--CCCccce
Q 009715 440 VGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE--SVLTVCREGHIKIWMRPGVAESQ--SSSSETV 506 (528)
Q Consensus 440 ~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~~s~d--~l~t~s~Dg~i~iW~~~~~~~~~--~~~~~~v 506 (528)
....+.+|...+.+++|+.| +|+|++.|+.+++|++..+++.. .+|....
T Consensus 250 -----------------le~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~ 303 (311)
T KOG0315|consen 250 -----------------LELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAA 303 (311)
T ss_pred -----------------eEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCccccc
Confidence 12245678999999999998 49999999999999999887433 2444433
No 28
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.1e-30 Score=267.61 Aligned_cols=278 Identities=21% Similarity=0.278 Sum_probs=236.4
Q ss_pred CCCCCeEEEEecCCcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCC
Q 009715 165 AKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDG 244 (528)
Q Consensus 165 ~~~~~~l~~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~ 244 (528)
+++|..|+.+..++.+++|++..... ........|...|.+++|+|++. ++++++.|++|+|||+...
T Consensus 168 s~~g~~l~~~~~~~~i~~~~~~~~~~----------~~~~~l~~h~~~v~~~~fs~d~~-~l~s~s~D~tiriwd~~~~- 235 (456)
T KOG0266|consen 168 SPDGRALAAASSDGLIRIWKLEGIKS----------NLLRELSGHTRGVSDVAFSPDGS-YLLSGSDDKTLRIWDLKDD- 235 (456)
T ss_pred cCCCCeEEEccCCCcEEEeecccccc----------hhhccccccccceeeeEECCCCc-EEEEecCCceEEEeeccCC-
Confidence 79999999999999999999843110 12222245999999999999999 9999999999999999432
Q ss_pred CCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCCCCEEEEEeCCCcEEEEecCCceEEeeecccCCCe
Q 009715 245 AGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGAL 324 (528)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v 324 (528)
...++.+.+|...|++++|+|+++++++|+.|+.|+|||+++++++..+.+|.+.|
T Consensus 236 ------------------------~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~i 291 (456)
T KOG0266|consen 236 ------------------------GRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGI 291 (456)
T ss_pred ------------------------CeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCce
Confidence 35678889999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCe--EEEEeecCCCC--eEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeE
Q 009715 325 LCCAWSMDGKYILTGGEDDLVQVWSMEDRK--VVAWGEGHNSW--VSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRL 400 (528)
Q Consensus 325 ~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~--~~~~~~~h~~~--V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i 400 (528)
.+++|++++.+|++++.|+.|+|||+.++. ++..+.++... ++.++|+| +| .+++++..|+.+
T Consensus 292 s~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp-------~~------~~ll~~~~d~~~ 358 (456)
T KOG0266|consen 292 SGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSP-------NG------KYLLSASLDRTL 358 (456)
T ss_pred EEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECC-------CC------cEEEEecCCCeE
Confidence 999999999999999999999999999998 66777777665 99999999 99 799999999999
Q ss_pred EEEEccCCeEEEEeecCCCCCCCeecCCCCCccCCceeeeecCCCCceeeecCCCCceEEeecC-CCCeEEEEEeCC--e
Q 009715 401 LLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVH-TEPLSGLIFTQE--S 477 (528)
Q Consensus 401 ~lwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h-~~~V~~l~~s~d--~ 477 (528)
++||+..+.+...+..........|+... ..-...+..|..+..+.+|+......+..+.+| ...|..+.+++. .
T Consensus 359 ~~w~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~ 436 (456)
T KOG0266|consen 359 KLWDLRSGKSVGTYTGHSNLVRCIFSPTL--STGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENL 436 (456)
T ss_pred EEEEccCCcceeeecccCCcceeEecccc--cCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCe
Confidence 99999999988888764433111111111 122356789999999999999999999999999 899999999995 4
Q ss_pred EEEEE--CCCeEEEEeCC
Q 009715 478 VLTVC--REGHIKIWMRP 493 (528)
Q Consensus 478 l~t~s--~Dg~i~iW~~~ 493 (528)
+++++ .|+.|++|..+
T Consensus 437 ~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 437 IASSSFEGDGLIRLWKYD 454 (456)
T ss_pred eeecCcCCCceEEEecCC
Confidence 77777 78999999865
No 29
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=2.3e-30 Score=228.33 Aligned_cols=269 Identities=19% Similarity=0.258 Sum_probs=213.2
Q ss_pred CCeEEEEecCCcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCC
Q 009715 168 GHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGD 247 (528)
Q Consensus 168 ~~~l~~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~ 247 (528)
|..|++++.|..|++|+... +..... .....+ .|+..|+.++|+|.|+ +|++|+.|.++.||.-..+
T Consensus 27 g~ilAscg~Dk~vriw~~~~-----~~s~~c-k~vld~--~hkrsVRsvAwsp~g~-~La~aSFD~t~~Iw~k~~~---- 93 (312)
T KOG0645|consen 27 GVILASCGTDKAVRIWSTSS-----GDSWTC-KTVLDD--GHKRSVRSVAWSPHGR-YLASASFDATVVIWKKEDG---- 93 (312)
T ss_pred ceEEEeecCCceEEEEecCC-----CCcEEE-EEeccc--cchheeeeeeecCCCc-EEEEeeccceEEEeecCCC----
Confidence 77899999999999999874 112222 222222 4999999999999999 9999999999999986531
Q ss_pred CccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCCCCEEEEEeCCCcEEEEecCCc---eEEeeecccCCCe
Q 009715 248 SSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKE---QLICGGKSYYGAL 324 (528)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~~~dg~i~vwd~~~~---~~~~~~~~~~~~v 324 (528)
..+.+..+.+|..+|.|++|+++|++||++++|+.|.||.+..+ +++..+..|...|
T Consensus 94 --------------------efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDV 153 (312)
T KOG0645|consen 94 --------------------EFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDV 153 (312)
T ss_pred --------------------ceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccc
Confidence 24568889999999999999999999999999999999999743 5677889999999
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCC---CeEEEEeecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEE
Q 009715 325 LCCAWSMDGKYILTGGEDDLVQVWSMED---RKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLL 401 (528)
Q Consensus 325 ~~l~~sp~g~~l~sg~~dg~v~vwd~~~---~~~~~~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~ 401 (528)
..+.|+|...+|++++.|++|++|+-.. -++++++.+|...|.+++|+| .| .+|++++.|++|+
T Consensus 154 K~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~-------~G------~rl~s~sdD~tv~ 220 (312)
T KOG0645|consen 154 KHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDN-------IG------SRLVSCSDDGTVS 220 (312)
T ss_pred cEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecC-------CC------ceEEEecCCcceE
Confidence 9999999999999999999999998762 378999999999999999999 89 7999999999999
Q ss_pred EEEccCCeEEEEeecCCCCCCCeecCCCCCccCCceeeeecCCCCceeeecCC------CCceE-EeecCCCCeEEEEEe
Q 009715 402 LWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPK------LSPLV-AHRVHTEPLSGLIFT 474 (528)
Q Consensus 402 lwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~d~~~~~g~~~~~~~~~d~~~------~~~~~-~~~~h~~~V~~l~~s 474 (528)
||-+.+.-.. .+......+.+. +..+..+..+..++++.... .+.+. ....|...|++++|.
T Consensus 221 Iw~~~~~~~~---~~sr~~Y~v~W~--------~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~ 289 (312)
T KOG0645|consen 221 IWRLYTDLSG---MHSRALYDVPWD--------NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWN 289 (312)
T ss_pred eeeeccCcch---hcccceEeeeec--------ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEc
Confidence 9986632111 111111212221 24556666677777765432 22222 334699999999999
Q ss_pred CC---eEEEEECCCeEEEEeCC
Q 009715 475 QE---SVLTVCREGHIKIWMRP 493 (528)
Q Consensus 475 ~d---~l~t~s~Dg~i~iW~~~ 493 (528)
|. .|++++.||.|++|.+.
T Consensus 290 p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 290 PKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred CCCCCceeecCCCceEEEEEec
Confidence 94 49999999999999874
No 30
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.3e-30 Score=255.31 Aligned_cols=392 Identities=14% Similarity=0.160 Sum_probs=307.0
Q ss_pred hhhhhhhhcCCCCCceeeccCCCCCCCccccCCcccCCcccCCCCCCcceeeeCCCccEEEEeCCCcEEEEeCCCCCCC-
Q 009715 86 VRSAAAKLLGTGNGSRTLGFGGGNGGSKSISGSSRIGSLGASSSSTSMTNTNFDGKGTYIIFNVGDAIFISDLNSQDKD- 164 (528)
Q Consensus 86 ~~~~~~~~~~~~~g~~~~sf~gh~~~v~~v~~s~~~~~~~~s~s~~s~~~~~~~~~g~~~~~~~~~~i~v~~~~~~~~~- 164 (528)
=+.+..|+|...++.....|.||..+|+++.|.. .|..++|++. |+.+++|+.-...-.+.++++.-.
T Consensus 84 YaDGsVqif~~~s~~~~~tfngHK~AVt~l~fd~-~G~rlaSGsk----------Dt~IIvwDlV~E~Gl~rL~GHkd~i 152 (888)
T KOG0306|consen 84 YADGSVQIFSLESEEILITFNGHKAAVTTLKFDK-IGTRLASGSK----------DTDIIVWDLVGEEGLFRLRGHKDSI 152 (888)
T ss_pred ecCceEEeeccCCCceeeeecccccceEEEEEcc-cCceEeecCC----------CccEEEEEeccceeeEEeecchHHH
Confidence 4466789999999999999999999999999998 7788888885 999999998777777777764333
Q ss_pred -----CCCCCeEEEEecCCcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeCCceEEEEE
Q 009715 165 -----AKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYE 239 (528)
Q Consensus 165 -----~~~~~~l~~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd 239 (528)
..+.+.|++.+.|+.|++||+.+|. ..+.-..|.+.|+.+++.+ + +++++..|+.+++|+
T Consensus 153 T~~~F~~~~~~lvS~sKDs~iK~WdL~tqh------------Cf~Thvd~r~Eiw~l~~~~--~-~lvt~~~dse~~v~~ 217 (888)
T KOG0306|consen 153 TQALFLNGDSFLVSVSKDSMIKFWDLETQH------------CFETHVDHRGEIWALVLDE--K-LLVTAGTDSELKVWE 217 (888)
T ss_pred hHHhccCCCeEEEEeccCceEEEEecccce------------eeeEEecccceEEEEEEec--c-eEEEEecCCceEEEE
Confidence 5567888999999999999998732 1111112889999999998 4 899999999999999
Q ss_pred cCCCCCCC--------------------Ccccccccc-ceeEEe------------------------------------
Q 009715 240 KSKDGAGD--------------------SSFPVIKDQ-TQFSVA------------------------------------ 262 (528)
Q Consensus 240 ~~~~~~~~--------------------~~~~~~~~~-~~~~~~------------------------------------ 262 (528)
+..+.... .......+. ..+...
T Consensus 218 L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~ 297 (888)
T KOG0306|consen 218 LAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETE 297 (888)
T ss_pred eecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhcccc
Confidence 92211000 000000000 000000
Q ss_pred --------------------------------ccCCCC-------C-----------CC---------eEEEeecCCCeE
Q 009715 263 --------------------------------HPRYSK-------S-----------NP---------IARWHICQGSIN 283 (528)
Q Consensus 263 --------------------------------~~~~~~-------~-----------~~---------~~~~~~h~~~v~ 283 (528)
+..... . .. -..+.+|...|+
T Consensus 298 e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVR 377 (888)
T KOG0306|consen 298 ENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVR 377 (888)
T ss_pred ccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhhee
Confidence 000000 0 00 023456899999
Q ss_pred EEEECCCCCEEEEEeCCCcEEEEecCCceEEeeecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCC
Q 009715 284 SIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHN 363 (528)
Q Consensus 284 ~l~~spdg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~~~~~~~~h~ 363 (528)
.++|+.|...+++++ .+.+++|+..+.+++.++.. +.+.+..|-|.++++++|...|.+.+||+.+...+.++++|.
T Consensus 378 sl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~--~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHd 454 (888)
T KOG0306|consen 378 SLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITC--GYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHD 454 (888)
T ss_pred EEEeecCceeeeecC-CCcEEEEEccCcceeEEecc--ccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccc
Confidence 999999987777775 47899999999999999874 489999999999999999999999999999999999999999
Q ss_pred CCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeE-------------EEEeecCCCCCCCeecCCCC
Q 009715 364 SWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEI-------------VVPLRRGPLGGSPTFSTGSQ 430 (528)
Q Consensus 364 ~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~-------------~~~~~~~~~~~~~~~s~~~~ 430 (528)
+.|.+++..| |+ ..+++++.|.+|++||+..-.. ..+++....+.++.+||++
T Consensus 455 gaIWsi~~~p-------D~------~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdg- 520 (888)
T KOG0306|consen 455 GAIWSISLSP-------DN------KGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDG- 520 (888)
T ss_pred cceeeeeecC-------CC------CceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCC-
Confidence 9999999999 98 6899999999999999753211 1233444567778888888
Q ss_pred CccCCceeeeecCCCCceeeecCCCCceEEeecCCCCeEEEEEeCCe--EEEEECCCeEEEEeCCCCcc--ccCCCccce
Q 009715 431 SAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWMRPGVAE--SQSSSSETV 506 (528)
Q Consensus 431 ~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~~s~d~--l~t~s~Dg~i~iW~~~~~~~--~~~~~~~~v 506 (528)
..+.++-++..+.+|-+.+.+....+.||.-||.++..+||. ++|||.|.+|+||-++-+.. ..+.|.+.|
T Consensus 521 -----k~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSv 595 (888)
T KOG0306|consen 521 -----KLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSV 595 (888)
T ss_pred -----cEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCce
Confidence 677888899999999999999999999999999999999985 99999999999999887764 455788998
Q ss_pred --EEEccCCceEEEeeeeccc
Q 009715 507 --LSTSSKDKPLLSSKVVTSS 525 (528)
Q Consensus 507 --l~~spd~~~l~s~~~~gs~ 525 (528)
+.|-|+...+.+++.++-+
T Consensus 596 m~V~F~P~~~~FFt~gKD~kv 616 (888)
T KOG0306|consen 596 MSVQFLPKTHLFFTCGKDGKV 616 (888)
T ss_pred eEEEEcccceeEEEecCcceE
Confidence 6679999888888877643
No 31
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=4e-31 Score=241.17 Aligned_cols=288 Identities=15% Similarity=0.166 Sum_probs=244.5
Q ss_pred eccCCCCCCCccccCCcccCCcccCCCCCCcceeeeCCCccEEEEeCCCcEEEEeCCCCCCC------CCCCCeEEEEec
Q 009715 103 LGFGGGNGGSKSISGSSRIGSLGASSSSTSMTNTNFDGKGTYIIFNVGDAIFISDLNSQDKD------AKDGHDLLIGLN 176 (528)
Q Consensus 103 ~sf~gh~~~v~~v~~s~~~~~~~~s~s~~s~~~~~~~~~g~~~~~~~~~~i~v~~~~~~~~~------~~~~~~l~~g~~ 176 (528)
+.+.||.|-|+||.+.| ...++++++. |+.+.+|+.........+...... ++.-.+|++++.
T Consensus 145 rVi~gHlgWVr~vavdP-~n~wf~tgs~----------DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~ge 213 (460)
T KOG0285|consen 145 RVISGHLGWVRSVAVDP-GNEWFATGSA----------DRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGE 213 (460)
T ss_pred hhhhhccceEEEEeeCC-CceeEEecCC----------CceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecC
Confidence 56789999999999999 5678888886 788888887776655555543222 778889999999
Q ss_pred CCcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCcccccccc
Q 009715 177 SGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQ 256 (528)
Q Consensus 177 ~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~ 256 (528)
|++|++||+.. ..+.+...+|-+.|.|++.+|.-+ .|++|+.|.+++|||+++
T Consensus 214 dk~VKCwDLe~------------nkvIR~YhGHlS~V~~L~lhPTld-vl~t~grDst~RvWDiRt-------------- 266 (460)
T KOG0285|consen 214 DKQVKCWDLEY------------NKVIRHYHGHLSGVYCLDLHPTLD-VLVTGGRDSTIRVWDIRT-------------- 266 (460)
T ss_pred CCeeEEEechh------------hhhHHHhccccceeEEEeccccce-eEEecCCcceEEEeeecc--------------
Confidence 99999999987 335556667999999999999999 999999999999999986
Q ss_pred ceeEEeccCCCCCCCeEEEeecCCCeEEEEECCCCCEEEEEeCCCcEEEEecCCceEEeeecccCCCeEEEEEcCCCCEE
Q 009715 257 TQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYI 336 (528)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~g~~l 336 (528)
...+..+.+|..+|..+.+.|-...+++|+.|++|++||+..++....+..|...|.+++.+|....+
T Consensus 267 ------------r~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~f 334 (460)
T KOG0285|consen 267 ------------RASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLF 334 (460)
T ss_pred ------------cceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhh
Confidence 46788999999999999999977789999999999999999999999999999999999999999999
Q ss_pred EEEeCCCcEEEEECCCCeEEEEeecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEEEeec
Q 009715 337 LTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRR 416 (528)
Q Consensus 337 ~sg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~ 416 (528)
|+++.| .|+-|++..++.+..+.+|..-|++++... || .+++|++.|.+.+||.+++-..+.+..
T Consensus 335 ASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~ns-------D~-------v~~~G~dng~~~fwdwksg~nyQ~~~t 399 (460)
T KOG0285|consen 335 ASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVNS-------DG-------VLVSGGDNGSIMFWDWKSGHNYQRGQT 399 (460)
T ss_pred hccCCc-cceeccCCccchhhccccccceeeeeeecc-------Cc-------eEEEcCCceEEEEEecCcCcccccccc
Confidence 999877 689999999999999999999999999987 88 899999999999999999876554432
Q ss_pred CCCCCCCeecCCCCCccCCceeeeecCCCCceeeecCCCCceEEeecCCCCeEEEEEeCCe--EEEEECCCeEEEEeCCC
Q 009715 417 GPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWMRPG 494 (528)
Q Consensus 417 ~~~~~~~~~s~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~~s~d~--l~t~s~Dg~i~iW~~~~ 494 (528)
-.. -|++ ..+..|.+.+|...+ |+||..|.+|++|.-..
T Consensus 400 ~vq--------------------pGSl-------------------~sEagI~as~fDktg~rlit~eadKtIk~~keDe 440 (460)
T KOG0285|consen 400 IVQ--------------------PGSL-------------------ESEAGIFASCFDKTGSRLITGEADKTIKMYKEDE 440 (460)
T ss_pred ccc--------------------CCcc-------------------ccccceeEEeecccCceEEeccCCcceEEEeccc
Confidence 110 1111 135678999998864 99999999999998543
No 32
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=3e-31 Score=242.71 Aligned_cols=275 Identities=19% Similarity=0.250 Sum_probs=236.8
Q ss_pred ccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEE
Q 009715 208 VNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAF 287 (528)
Q Consensus 208 ~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 287 (528)
.|..+|+.+-|+|+-. ++++++.|++|++||..++ +....+++|+..+..|+|
T Consensus 106 g~r~~vt~v~~hp~~~-~v~~as~d~tikv~D~~tg--------------------------~~e~~LrGHt~sv~di~~ 158 (406)
T KOG0295|consen 106 GHRSSVTRVIFHPSEA-LVVSASEDATIKVFDTETG--------------------------ELERSLRGHTDSVFDISF 158 (406)
T ss_pred ccccceeeeeeccCce-EEEEecCCceEEEEEccch--------------------------hhhhhhhccccceeEEEE
Confidence 4889999999999998 8999999999999999862 335667889999999999
Q ss_pred CCCCCEEEEEeCCCcEEEEecCC-ceEEeeecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCe
Q 009715 288 STDGTYLATVGRDGYLRVFDYSK-EQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWV 366 (528)
Q Consensus 288 spdg~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~~~~~~~~h~~~V 366 (528)
+..|++|++++.|-.+.+||+++ .++++.+.+|.-.|.++.|-|.|.++++++.|.+|+.|++.++.++.++.+|..+|
T Consensus 159 ~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewv 238 (406)
T KOG0295|consen 159 DASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWV 238 (406)
T ss_pred ecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhE
Confidence 99999999999999999999986 56777888899999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEEEeecC-CCCCCCeecCCCCCc---------cCCc
Q 009715 367 SGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRG-PLGGSPTFSTGSQSA---------HWDN 436 (528)
Q Consensus 367 ~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~-~~~~~~~~s~~~~~~---------~~d~ 436 (528)
.-++.+. || .++++++.|.+|++|-+.++++...++.. .++.++++.+..... ....
T Consensus 239 r~v~v~~-------DG------ti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~ 305 (406)
T KOG0295|consen 239 RMVRVNQ-------DG------TIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQ 305 (406)
T ss_pred EEEEecC-------Ce------eEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCcc
Confidence 9999988 99 89999999999999999999877766543 456666665554311 1123
Q ss_pred eeeeecCCCCceeeecCCCCceEEeecCCCCeEEEEEeCC--eEEEEECCCeEEEEeCCCCcccc--CCCccce--EEEc
Q 009715 437 VCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE--SVLTVCREGHIKIWMRPGVAESQ--SSSSETV--LSTS 510 (528)
Q Consensus 437 ~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~~s~d--~l~t~s~Dg~i~iW~~~~~~~~~--~~~~~~v--l~~s 510 (528)
.+..++.|..+++||+.++..+.++.+|...|.+++|+|. +|+++..|++|++||+..++... ..|+.-+ +.|.
T Consensus 306 ~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh 385 (406)
T KOG0295|consen 306 VLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFH 385 (406)
T ss_pred EEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecC
Confidence 5578889999999999999999999999999999999996 59999999999999999877432 2344433 7776
Q ss_pred cCCceEEEeeee
Q 009715 511 SKDKPLLSSKVV 522 (528)
Q Consensus 511 pd~~~l~s~~~~ 522 (528)
-+--|+++|+++
T Consensus 386 ~~~p~VvTGsVd 397 (406)
T KOG0295|consen 386 KTAPYVVTGSVD 397 (406)
T ss_pred CCCceEEecccc
Confidence 666799999886
No 33
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=6.9e-31 Score=255.10 Aligned_cols=264 Identities=20% Similarity=0.237 Sum_probs=220.4
Q ss_pred CCCCCeEEEEecCCcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCC
Q 009715 165 AKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDG 244 (528)
Q Consensus 165 ~~~~~~l~~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~ 244 (528)
||....++++..+|+|.|||.++| ...+......-+|.+.+|-+..+ ++++|+.|..|+||+..+
T Consensus 22 HPtePw~la~LynG~V~IWnyetq------------tmVksfeV~~~PvRa~kfiaRkn-Wiv~GsDD~~IrVfnynt-- 86 (794)
T KOG0276|consen 22 HPTEPWILAALYNGDVQIWNYETQ------------TMVKSFEVSEVPVRAAKFIARKN-WIVTGSDDMQIRVFNYNT-- 86 (794)
T ss_pred CCCCceEEEeeecCeeEEEecccc------------eeeeeeeecccchhhheeeeccc-eEEEecCCceEEEEeccc--
Confidence 688999999999999999999873 23333444677999999999988 999999999999999986
Q ss_pred CCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCCCCEEEEEeCCCcEEEEecCCc-eEEeeecccCCC
Q 009715 245 AGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKE-QLICGGKSYYGA 323 (528)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~ 323 (528)
.+.++.+.+|..-|+|++.+|...+++++++|-.|++||.+.+ .+.+.+.+|.-.
T Consensus 87 ------------------------~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~Hy 142 (794)
T KOG0276|consen 87 ------------------------GEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHY 142 (794)
T ss_pred ------------------------ceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceE
Confidence 4678999999999999999999999999999999999999854 677889999999
Q ss_pred eEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEE
Q 009715 324 LLCCAWSM-DGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLL 402 (528)
Q Consensus 324 v~~l~~sp-~g~~l~sg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~l 402 (528)
|.+++|+| |...+|+++-|++|+||.+.+..+..++++|...|++|+|-+ .|.. .+|++|++|.+|++
T Consensus 143 VMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~-------~gdk----pylIsgaDD~tiKv 211 (794)
T KOG0276|consen 143 VMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYT-------GGDK----PYLISGADDLTIKV 211 (794)
T ss_pred EEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEecc-------CCCc----ceEEecCCCceEEE
Confidence 99999999 778999999999999999999999999999999999999987 4421 48999999999999
Q ss_pred EEccCCeEEEEeecCCCCCCCeecCCCCCccCCceeeeecCCCCceeeecCCCCceEEeecCCCCeEEEEEeCCe--EEE
Q 009715 403 WDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLT 480 (528)
Q Consensus 403 wd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~~s~d~--l~t 480 (528)
||..+..|++++ .||...|..+.|+|.. |+|
T Consensus 212 WDyQtk~CV~TL-----------------------------------------------eGHt~Nvs~v~fhp~lpiiis 244 (794)
T KOG0276|consen 212 WDYQTKSCVQTL-----------------------------------------------EGHTNNVSFVFFHPELPIIIS 244 (794)
T ss_pred eecchHHHHHHh-----------------------------------------------hcccccceEEEecCCCcEEEE
Confidence 999988776544 4699999999999985 999
Q ss_pred EECCCeEEEEeCCCCccccC--CCccceEEE--ccCCceEEEeeeeccc
Q 009715 481 VCREGHIKIWMRPGVAESQS--SSSETVLST--SSKDKPLLSSKVVTSS 525 (528)
Q Consensus 481 ~s~Dg~i~iW~~~~~~~~~~--~~~~~vl~~--spd~~~l~s~~~~gs~ 525 (528)
|+.||++|||+-.+-+.+.. -.-+.+..+ .+.++.+++|-..|++
T Consensus 245 gsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i 293 (794)
T KOG0276|consen 245 GSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSV 293 (794)
T ss_pred ecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcE
Confidence 99999999999665432222 122334333 3555555555554443
No 34
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.98 E-value=4.8e-30 Score=262.86 Aligned_cols=269 Identities=21% Similarity=0.332 Sum_probs=229.3
Q ss_pred cCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEEC
Q 009715 209 NNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFS 288 (528)
Q Consensus 209 h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 288 (528)
+...|.|+.|+++|. .|++++.|+.+++|+...... +..+.+.+|...|.+++|+
T Consensus 158 ~~~sv~~~~fs~~g~-~l~~~~~~~~i~~~~~~~~~~------------------------~~~~~l~~h~~~v~~~~fs 212 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGR-ALAAASSDGLIRIWKLEGIKS------------------------NLLRELSGHTRGVSDVAFS 212 (456)
T ss_pred ccCceEEEEEcCCCC-eEEEccCCCcEEEeecccccc------------------------hhhccccccccceeeeEEC
Confidence 578899999999999 799999999999999854210 2333446788999999999
Q ss_pred CCCCEEEEEeCCCcEEEEec-CCceEEeeecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCeE
Q 009715 289 TDGTYLATVGRDGYLRVFDY-SKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVS 367 (528)
Q Consensus 289 pdg~~l~s~~~dg~i~vwd~-~~~~~~~~~~~~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~~~~~~~~h~~~V~ 367 (528)
|+++++++++.|++|+|||+ ..+..++.+++|...|++++|+|+++++++|+.|+.|+|||+++++++..+.+|...|+
T Consensus 213 ~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is 292 (456)
T KOG0266|consen 213 PDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGIS 292 (456)
T ss_pred CCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceE
Confidence 99999999999999999999 55688999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCe--EEEEeecCC---CCCCCeecCCCCCccCCceeeeec
Q 009715 368 GVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDE--IVVPLRRGP---LGGSPTFSTGSQSAHWDNVCPVGT 442 (528)
Q Consensus 368 ~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~--~~~~~~~~~---~~~~~~~s~~~~~~~~d~~~~~g~ 442 (528)
+++|++ || .+|++++.|+.|++||+.++. +...+.... +...+.|++++ ..+..+.
T Consensus 293 ~~~f~~-------d~------~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~------~~ll~~~ 353 (456)
T KOG0266|consen 293 GLAFSP-------DG------NLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNG------KYLLSAS 353 (456)
T ss_pred EEEECC-------CC------CEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCC------cEEEEec
Confidence 999999 99 799999999999999999999 455555433 34677888877 6778888
Q ss_pred CCCCceeeecCCCCceEEeecCCCCeEEE---EEeCC--eEEEEECCCeEEEEeCCCCcc--ccCCC-ccce--EEEccC
Q 009715 443 LQPAPSMRDVPKLSPLVAHRVHTEPLSGL---IFTQE--SVLTVCREGHIKIWMRPGVAE--SQSSS-SETV--LSTSSK 512 (528)
Q Consensus 443 ~~~~~~~~d~~~~~~~~~~~~h~~~V~~l---~~s~d--~l~t~s~Dg~i~iW~~~~~~~--~~~~~-~~~v--l~~spd 512 (528)
.+..+++||+.....+..+.+|...+.++ .+++. .+++++.|+.|++|++.++.. ....| ...+ +++.|.
T Consensus 354 ~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~ 433 (456)
T KOG0266|consen 354 LDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPT 433 (456)
T ss_pred CCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCC
Confidence 99999999999999999999998865333 22333 499999999999999997653 33456 4554 777999
Q ss_pred CceEEEeee
Q 009715 513 DKPLLSSKV 521 (528)
Q Consensus 513 ~~~l~s~~~ 521 (528)
.++++++..
T Consensus 434 ~~~~~s~s~ 442 (456)
T KOG0266|consen 434 ENLIASSSF 442 (456)
T ss_pred cCeeeecCc
Confidence 999998874
No 35
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.98 E-value=3.1e-30 Score=230.63 Aligned_cols=277 Identities=14% Similarity=0.201 Sum_probs=231.2
Q ss_pred cCCcccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeE
Q 009715 204 KDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSIN 283 (528)
Q Consensus 204 ~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 283 (528)
.....|++.|..+.|+|+|. .|++|+.|..|.+|++..+ .+.....++|.++|.
T Consensus 41 m~l~gh~geI~~~~F~P~gs-~~aSgG~Dr~I~LWnv~gd-------------------------ceN~~~lkgHsgAVM 94 (338)
T KOG0265|consen 41 MLLPGHKGEIYTIKFHPDGS-CFASGGSDRAIVLWNVYGD-------------------------CENFWVLKGHSGAVM 94 (338)
T ss_pred hhcCCCcceEEEEEECCCCC-eEeecCCcceEEEEecccc-------------------------ccceeeeccccceeE
Confidence 33445999999999999999 9999999999999997642 344556679999999
Q ss_pred EEEECCCCCEEEEEeCCCcEEEEecCCceEEeeecccCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeEEEEeecC
Q 009715 284 SIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGK-YILTGGEDDLVQVWSMEDRKVVAWGEGH 362 (528)
Q Consensus 284 ~l~~spdg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~g~-~l~sg~~dg~v~vwd~~~~~~~~~~~~h 362 (528)
.+.|.+|++.|++++.|..|+.||.++|+.++.++.|..-|+.+.-+.-|. ++.+++.|++++|||+++..++++++ .
T Consensus 95 ~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~ 173 (338)
T KOG0265|consen 95 ELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-N 173 (338)
T ss_pred eeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-c
Confidence 999999999999999999999999999999999999999999998555554 56688999999999999999988876 5
Q ss_pred CCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEEEeecC-CCCCCCeecCCCCCccCCceeeee
Q 009715 363 NSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRG-PLGGSPTFSTGSQSAHWDNVCPVG 441 (528)
Q Consensus 363 ~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~d~~~~~g 441 (528)
.-.++++.|.. ++ ..+.+|+-|+.|++||++.......+... ..+..+..++.+ ..+..-
T Consensus 174 kyqltAv~f~d-------~s------~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~g------s~llsn 234 (338)
T KOG0265|consen 174 KYQLTAVGFKD-------TS------DQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYG------SFLLSN 234 (338)
T ss_pred ceeEEEEEecc-------cc------cceeeccccCceeeeccccCcceEEeecccCceeeEEeccCC------Cccccc
Confidence 67799999987 66 57999999999999999999999998865 467777777776 334556
Q ss_pred cCCCCceeeecCCCC----ceEEeecCCC----CeEEEEEeCCe--EEEEECCCeEEEEeCCCCc--cccCCCccce--E
Q 009715 442 TLQPAPSMRDVPKLS----PLVAHRVHTE----PLSGLIFTQES--VLTVCREGHIKIWMRPGVA--ESQSSSSETV--L 507 (528)
Q Consensus 442 ~~~~~~~~~d~~~~~----~~~~~~~h~~----~V~~l~~s~d~--l~t~s~Dg~i~iW~~~~~~--~~~~~~~~~v--l 507 (528)
+++..+++||++-.. .+..+.+|.. ....++|+|+. +..++.|+.+++||..+.. -...+|.+.| +
T Consensus 235 sMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~ 314 (338)
T KOG0265|consen 235 SMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEV 314 (338)
T ss_pred cccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEe
Confidence 678889999987553 3666666533 34677899974 8888999999999988755 4566888888 8
Q ss_pred EEccCCceEEEeeeecccc
Q 009715 508 STSSKDKPLLSSKVVTSSY 526 (528)
Q Consensus 508 ~~spd~~~l~s~~~~gs~~ 526 (528)
.|.|...+|.++..+-.+|
T Consensus 315 ~Fhp~e~iils~~sdk~i~ 333 (338)
T KOG0265|consen 315 DFHPTEPIILSCSSDKTIY 333 (338)
T ss_pred eecCCCcEEEEeccCceeE
Confidence 8999999999988775554
No 36
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.97 E-value=1.5e-29 Score=231.89 Aligned_cols=304 Identities=13% Similarity=0.152 Sum_probs=247.4
Q ss_pred CCCCCeEEEEecCCcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCC
Q 009715 165 AKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDG 244 (528)
Q Consensus 165 ~~~~~~l~~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~ 244 (528)
+|+.+.+++|+.|..-++|++.+.. +.-....|+..|+|+.|+.+|. +||||..+|.|+||+..++.
T Consensus 73 ~P~~~l~aTGGgDD~AflW~~~~ge------------~~~eltgHKDSVt~~~Fshdgt-lLATGdmsG~v~v~~~stg~ 139 (399)
T KOG0296|consen 73 HPNNNLVATGGGDDLAFLWDISTGE------------FAGELTGHKDSVTCCSFSHDGT-LLATGDMSGKVLVFKVSTGG 139 (399)
T ss_pred CCCCceEEecCCCceEEEEEccCCc------------ceeEecCCCCceEEEEEccCce-EEEecCCCccEEEEEcccCc
Confidence 5888899999999999999998721 2222334999999999999999 99999999999999998743
Q ss_pred CCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCCCCEEEEEeCCCcEEEEecCCceEEeeecccCCCe
Q 009715 245 AGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGAL 324 (528)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v 324 (528)
.... +...-..|.=+.|+|.+..|+.|+.||.+.+|.+.++...+.+.+|..++
T Consensus 140 ~~~~--------------------------~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~c 193 (399)
T KOG0296|consen 140 EQWK--------------------------LDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPC 193 (399)
T ss_pred eEEE--------------------------eecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCc
Confidence 2111 11123567789999999999999999999999999888888899999999
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecC-CCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEE
Q 009715 325 LCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGH-NSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLW 403 (528)
Q Consensus 325 ~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~~~~~~~~h-~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lw 403 (528)
++=.|.|+|+.++++..||+|++||..++.++..+..- .....++.++. ++ ..+++|..++.+++-
T Consensus 194 t~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~-------~~------~~~~~g~~e~~~~~~ 260 (399)
T KOG0296|consen 194 TCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNL-------AG------STLTKGNSEGVACGV 260 (399)
T ss_pred ccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCcccccc-------cc------ceeEeccCCccEEEE
Confidence 99999999999999999999999999999999888632 33566777776 77 789999999999999
Q ss_pred EccCCeEEEEeecC---------CCCCCCeecCCCCCccCCceeeeecCCCCceeeecCCCCceEEeecCCCCeEEEEEe
Q 009715 404 DLEMDEIVVPLRRG---------PLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFT 474 (528)
Q Consensus 404 d~~~~~~~~~~~~~---------~~~~~~~~s~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~~s 474 (528)
+..+++.+...... ....++.+.+.+. --...+.|.+++.+.+||.....+.... .|..+|..+.|-
T Consensus 261 ~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss---~lpL~A~G~vdG~i~iyD~a~~~~R~~c-~he~~V~~l~w~ 336 (399)
T KOG0296|consen 261 NNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSS---KLPLAACGSVDGTIAIYDLAASTLRHIC-EHEDGVTKLKWL 336 (399)
T ss_pred ccccceEEEecCCCCccccccchhhhhhhhhccccc---ccchhhcccccceEEEEecccchhheec-cCCCceEEEEEc
Confidence 99999988776631 1222333333321 1133489999999999999887665544 588999999999
Q ss_pred C-CeEEEEECCCeEEEEeCCCCcccc--CCCccce--EEEccCCceEEEeeeecc
Q 009715 475 Q-ESVLTVCREGHIKIWMRPGVAESQ--SSSSETV--LSTSSKDKPLLSSKVVTS 524 (528)
Q Consensus 475 ~-d~l~t~s~Dg~i~iW~~~~~~~~~--~~~~~~v--l~~spd~~~l~s~~~~gs 524 (528)
+ ++|++++.||.|++||..++.... .+|...| ++++||.+++++++.++.
T Consensus 337 ~t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~ 391 (399)
T KOG0296|consen 337 NTDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNT 391 (399)
T ss_pred CcchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCe
Confidence 9 679999999999999998887543 4899999 566999999999988754
No 37
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=3.5e-29 Score=240.79 Aligned_cols=268 Identities=22% Similarity=0.335 Sum_probs=228.4
Q ss_pred CCCCeEEEEecCCcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCC
Q 009715 166 KDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGA 245 (528)
Q Consensus 166 ~~~~~l~~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~ 245 (528)
++++.|+++..+|.|++|++.... .. .....|...+..+.|+|+++ +|++++.||.|++|++...
T Consensus 19 ~~~~~l~~~~~~g~i~i~~~~~~~-----~~-------~~~~~~~~~i~~~~~~~~~~-~l~~~~~~~~i~i~~~~~~-- 83 (289)
T cd00200 19 PDGKLLATGSGDGTIKVWDLETGE-----LL-------RTLKGHTGPVRDVAASADGT-YLASGSSDKTIRLWDLETG-- 83 (289)
T ss_pred CCCCEEEEeecCcEEEEEEeeCCC-----cE-------EEEecCCcceeEEEECCCCC-EEEEEcCCCeEEEEEcCcc--
Confidence 677888999999999999987521 11 11123778899999999997 8999999999999999752
Q ss_pred CCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCCCCEEEEEeCCCcEEEEecCCceEEeeecccCCCeE
Q 009715 246 GDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALL 325 (528)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~ 325 (528)
..+..+..|...|.++.|++++.++++++.|+.|++||+.+++.+..+..|...+.
T Consensus 84 ------------------------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~ 139 (289)
T cd00200 84 ------------------------ECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVN 139 (289)
T ss_pred ------------------------cceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEE
Confidence 34455667778999999999988888888899999999999998888888999999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEc
Q 009715 326 CCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDL 405 (528)
Q Consensus 326 ~l~~sp~g~~l~sg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~ 405 (528)
+++|+|++.++++++.|+.|++||++.++.+..+..|...|.+++|+| ++ ..+++++.|+.|++||+
T Consensus 140 ~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-------~~------~~l~~~~~~~~i~i~d~ 206 (289)
T cd00200 140 SVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSP-------DG------EKLLSSSSDGTIKLWDL 206 (289)
T ss_pred EEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECC-------Cc------CEEEEecCCCcEEEEEC
Confidence 999999999999988899999999999998888989999999999999 87 68888888999999999
Q ss_pred cCCeEEEEee-cCCCCCCCeecCCCCCccCCceeeeecCCCCceeeecCCCCceEEeecCCCCeEEEEEeCC--eEEEEE
Q 009715 406 EMDEIVVPLR-RGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE--SVLTVC 482 (528)
Q Consensus 406 ~~~~~~~~~~-~~~~~~~~~~s~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~~s~d--~l~t~s 482 (528)
+.++.+..+. +...+..+.+++++ ..+..+..++.+.+|++...+++..+..|...|.+++|+++ .|++++
T Consensus 207 ~~~~~~~~~~~~~~~i~~~~~~~~~------~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 280 (289)
T cd00200 207 STGKCLGTLRGHENGVNSVAFSPDG------YLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGS 280 (289)
T ss_pred CCCceecchhhcCCceEEEEEcCCC------cEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEec
Confidence 9988888773 33456666776653 44556666899999999998899889999999999999996 499999
Q ss_pred CCCeEEEEe
Q 009715 483 REGHIKIWM 491 (528)
Q Consensus 483 ~Dg~i~iW~ 491 (528)
.|+.|++|+
T Consensus 281 ~d~~i~iw~ 289 (289)
T cd00200 281 ADGTIRIWD 289 (289)
T ss_pred CCCeEEecC
Confidence 999999996
No 38
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=9.4e-32 Score=244.26 Aligned_cols=258 Identities=18% Similarity=0.234 Sum_probs=220.0
Q ss_pred cCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEEC
Q 009715 209 NNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFS 288 (528)
Q Consensus 209 h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 288 (528)
....|.|+.+..+ .+++|..|.+|+|||... ...++.+.+|++.|.|+.|.
T Consensus 196 ~skgVYClQYDD~---kiVSGlrDnTikiWD~n~--------------------------~~c~~~L~GHtGSVLCLqyd 246 (499)
T KOG0281|consen 196 NSKGVYCLQYDDE---KIVSGLRDNTIKIWDKNS--------------------------LECLKILTGHTGSVLCLQYD 246 (499)
T ss_pred cCCceEEEEecch---hhhcccccCceEEecccc--------------------------HHHHHhhhcCCCcEEeeecc
Confidence 5567999999643 699999999999999874 34567788999999999994
Q ss_pred CCCCEEEEEeCCCcEEEEecCCceEEeeecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe---EEEEeecCCCC
Q 009715 289 TDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRK---VVAWGEGHNSW 365 (528)
Q Consensus 289 pdg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~---~~~~~~~h~~~ 365 (528)
.+.|++|+.|.+|+|||.++++++..+..|...|..+.|+ ..++++++.|..+.+||+.... +.+.+.||...
T Consensus 247 --~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAa 322 (499)
T KOG0281|consen 247 --ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAA 322 (499)
T ss_pred --ceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhh
Confidence 5699999999999999999999999999999999999997 4589999999999999998754 34567799999
Q ss_pred eEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEEEeecCCC-CCCCeecCCCCCccCCceeeeecCC
Q 009715 366 VSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPL-GGSPTFSTGSQSAHWDNVCPVGTLQ 444 (528)
Q Consensus 366 V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~d~~~~~g~~~ 444 (528)
|+.|.|+. +++++++.|.+|++|++.+++++.++..+.. +.++ .-.+..+..|+.+
T Consensus 323 VNvVdfd~---------------kyIVsASgDRTikvW~~st~efvRtl~gHkRGIACl--------QYr~rlvVSGSSD 379 (499)
T KOG0281|consen 323 VNVVDFDD---------------KYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACL--------QYRDRLVVSGSSD 379 (499)
T ss_pred eeeecccc---------------ceEEEecCCceEEEEeccceeeehhhhcccccceeh--------hccCeEEEecCCC
Confidence 99999964 6999999999999999999999998876422 1111 1234667889999
Q ss_pred CCceeeecCCCCceEEeecCCCCeEEEEEeCCeEEEEECCCeEEEEeCCCCccc-----------cCCCccceEEEccCC
Q 009715 445 PAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQESVLTVCREGHIKIWMRPGVAES-----------QSSSSETVLSTSSKD 513 (528)
Q Consensus 445 ~~~~~~d~~~~~~~~~~~~h~~~V~~l~~s~d~l~t~s~Dg~i~iW~~~~~~~~-----------~~~~~~~vl~~spd~ 513 (528)
..+++||+..+..++.++||++-|.++.|....|++|+.||+|+|||+...... ...|.+.|+.+-.|.
T Consensus 380 ntIRlwdi~~G~cLRvLeGHEeLvRciRFd~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~ 459 (499)
T KOG0281|consen 380 NTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDE 459 (499)
T ss_pred ceEEEEeccccHHHHHHhchHHhhhheeecCceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeecc
Confidence 999999999999999999999999999999999999999999999998765532 236777888888888
Q ss_pred ceEEEeeee
Q 009715 514 KPLLSSKVV 522 (528)
Q Consensus 514 ~~l~s~~~~ 522 (528)
..|++++-+
T Consensus 460 fqIvsssHd 468 (499)
T KOG0281|consen 460 FQIISSSHD 468 (499)
T ss_pred eEEEeccCC
Confidence 888776544
No 39
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2.5e-30 Score=226.08 Aligned_cols=235 Identities=17% Similarity=0.271 Sum_probs=200.9
Q ss_pred cCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEEC
Q 009715 209 NNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFS 288 (528)
Q Consensus 209 h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 288 (528)
-.+.+.+++|+++..+.+++++.||++++||+.. ...|++.|+.|..+|.++.|+
T Consensus 59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~-------------------------~s~Pi~~~kEH~~EV~Svdwn 113 (311)
T KOG0277|consen 59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTM-------------------------PSKPIHKFKEHKREVYSVDWN 113 (311)
T ss_pred cccceeEeeecCCCcceEEEEecCceEEEeccCC-------------------------CCcchhHHHhhhhheEEeccc
Confidence 4567999999999988999999999999999654 246899999999999999999
Q ss_pred C-CCCEEEEEeCCCcEEEEecCCceEEeeecccCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCe
Q 009715 289 T-DGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSM-DGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWV 366 (528)
Q Consensus 289 p-dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp-~g~~l~sg~~dg~v~vwd~~~~~~~~~~~~h~~~V 366 (528)
+ +...+++++-|++|++|+...++.++++.+|...|...+|+| .+.++++++.|+.+++||++..-....+..|...+
T Consensus 114 ~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Ei 193 (311)
T KOG0277|consen 114 TVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEI 193 (311)
T ss_pred cccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEecccee
Confidence 9 777888899999999999999999999999999999999999 67799999999999999998743333488899999
Q ss_pred EEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEEEeecCCCCCCCeecCCCCCccCCceeeeecCCCC
Q 009715 367 SGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPA 446 (528)
Q Consensus 367 ~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~d~~~~~g~~~~~ 446 (528)
.+..|+.| +. +.|++++.|+.|+.||+++-+
T Consensus 194 l~cdw~ky------~~------~vl~Tg~vd~~vr~wDir~~r------------------------------------- 224 (311)
T KOG0277|consen 194 LCCDWSKY------NH------NVLATGGVDNLVRGWDIRNLR------------------------------------- 224 (311)
T ss_pred Eeeccccc------CC------cEEEecCCCceEEEEehhhcc-------------------------------------
Confidence 99999986 55 799999999999999998643
Q ss_pred ceeeecCCCCceEEeecCCCCeEEEEEeCC---eEEEEECCCeEEEEeCCCCc---cccCCCccce--EEEcc-CCceEE
Q 009715 447 PSMRDVPKLSPLVAHRVHTEPLSGLIFTQE---SVLTVCREGHIKIWMRPGVA---ESQSSSSETV--LSTSS-KDKPLL 517 (528)
Q Consensus 447 ~~~~d~~~~~~~~~~~~h~~~V~~l~~s~d---~l~t~s~Dg~i~iW~~~~~~---~~~~~~~~~v--l~~sp-d~~~l~ 517 (528)
.|+..+.+|.-.|..|+|+|. .|++++.|-++||||...+. +....|.+-+ +.+|+ +..++|
T Consensus 225 ---------~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vA 295 (311)
T KOG0277|consen 225 ---------TPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVA 295 (311)
T ss_pred ---------ccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceee
Confidence 245567789999999999996 39999999999999987544 3344677777 56655 667888
Q ss_pred Eeeeecccc
Q 009715 518 SSKVVTSSY 526 (528)
Q Consensus 518 s~~~~gs~~ 526 (528)
+.+.++.+|
T Consensus 296 s~gWDe~l~ 304 (311)
T KOG0277|consen 296 STGWDELLY 304 (311)
T ss_pred eccccccee
Confidence 888877654
No 40
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3.3e-30 Score=250.43 Aligned_cols=250 Identities=14% Similarity=0.166 Sum_probs=213.0
Q ss_pred eccCCCCCCCccccCCcccCCcccCCCCCCcceeeeCCCccEEEEeCCCcEEEEeCCCCCCC------CCCCCeEEEEec
Q 009715 103 LGFGGGNGGSKSISGSSRIGSLGASSSSTSMTNTNFDGKGTYIIFNVGDAIFISDLNSQDKD------AKDGHDLLIGLN 176 (528)
Q Consensus 103 ~sf~gh~~~v~~v~~s~~~~~~~~s~s~~s~~~~~~~~~g~~~~~~~~~~i~v~~~~~~~~~------~~~~~~l~~g~~ 176 (528)
+.|..|...|.||-++|...=++++- -+|++.+||..+...+.++...+.. -...+.+++|+.
T Consensus 7 rk~~~rSdRVKsVd~HPtePw~la~L-----------ynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsD 75 (794)
T KOG0276|consen 7 RKFQSRSDRVKSVDFHPTEPWILAAL-----------YNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSD 75 (794)
T ss_pred hHhhccCCceeeeecCCCCceEEEee-----------ecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecC
Confidence 34667999999999999443333332 3689999998887666555544333 567789999999
Q ss_pred CCcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCcccccccc
Q 009715 177 SGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQ 256 (528)
Q Consensus 177 ~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~ 256 (528)
|..|++|+..+ ..-.+.+..|.+-|.|++.+|..+ ++++++.|-+|++||.+..
T Consensus 76 D~~IrVfnynt------------~ekV~~FeAH~DyIR~iavHPt~P-~vLtsSDDm~iKlW~we~~------------- 129 (794)
T KOG0276|consen 76 DMQIRVFNYNT------------GEKVKTFEAHSDYIRSIAVHPTLP-YVLTSSDDMTIKLWDWENE------------- 129 (794)
T ss_pred CceEEEEeccc------------ceeeEEeeccccceeeeeecCCCC-eEEecCCccEEEEeeccCc-------------
Confidence 99999999987 223334456999999999999999 9999999999999999852
Q ss_pred ceeEEeccCCCCCCCeEEEeecCCCeEEEEECC-CCCEEEEEeCCCcEEEEecCCceEEeeecccCCCeEEEEEcCC--C
Q 009715 257 TQFSVAHPRYSKSNPIARWHICQGSINSIAFST-DGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMD--G 333 (528)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp-dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~--g 333 (528)
....+.+.+|+.-|.+++|+| |.+.+|+++.|++|+||.+.+..+..++++|...|+|+.+-+. .
T Consensus 130 ------------wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdk 197 (794)
T KOG0276|consen 130 ------------WACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDK 197 (794)
T ss_pred ------------eeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCc
Confidence 456788899999999999999 8899999999999999999999999999999999999999874 4
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEeecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEEE
Q 009715 334 KYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVP 413 (528)
Q Consensus 334 ~~l~sg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~ 413 (528)
.+|++|++|.+|+|||.++..|+++++||...|..+.|+| .- .++++|++||++|||+-.+.+....
T Consensus 198 pylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp-------~l------piiisgsEDGTvriWhs~Ty~lE~t 264 (794)
T KOG0276|consen 198 PYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHP-------EL------PIIISGSEDGTVRIWNSKTYKLEKT 264 (794)
T ss_pred ceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecC-------CC------cEEEEecCCccEEEecCcceehhhh
Confidence 6999999999999999999999999999999999999999 44 5899999999999999887766544
Q ss_pred e
Q 009715 414 L 414 (528)
Q Consensus 414 ~ 414 (528)
+
T Consensus 265 L 265 (794)
T KOG0276|consen 265 L 265 (794)
T ss_pred h
Confidence 4
No 41
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=9.9e-29 Score=237.61 Aligned_cols=272 Identities=24% Similarity=0.367 Sum_probs=231.4
Q ss_pred ccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEE
Q 009715 208 VNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAF 287 (528)
Q Consensus 208 ~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 287 (528)
.|..+|++++|+|+++ +|++++.||.|++|++... .....+..|...+..+.|
T Consensus 7 ~h~~~i~~~~~~~~~~-~l~~~~~~g~i~i~~~~~~--------------------------~~~~~~~~~~~~i~~~~~ 59 (289)
T cd00200 7 GHTGGVTCVAFSPDGK-LLATGSGDGTIKVWDLETG--------------------------ELLRTLKGHTGPVRDVAA 59 (289)
T ss_pred ccCCCEEEEEEcCCCC-EEEEeecCcEEEEEEeeCC--------------------------CcEEEEecCCcceeEEEE
Confidence 3899999999999998 9999999999999998752 244556677888999999
Q ss_pred CCCCCEEEEEeCCCcEEEEecCCceEEeeecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCeE
Q 009715 288 STDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVS 367 (528)
Q Consensus 288 spdg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~~~~~~~~h~~~V~ 367 (528)
+|++++|++++.|+.|++||+.+++.+..+..|...+.++.|+|+++++++++.|+.|++||+++++.+..+..|...|.
T Consensus 60 ~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~ 139 (289)
T cd00200 60 SADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVN 139 (289)
T ss_pred CCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEE
Confidence 99999999999999999999998888888888888999999999998999888899999999999998888889999999
Q ss_pred EEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEEEeecCC-CCCCCeecCCCCCccCCceeeeecCCCC
Q 009715 368 GVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGP-LGGSPTFSTGSQSAHWDNVCPVGTLQPA 446 (528)
Q Consensus 368 ~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~d~~~~~g~~~~~ 446 (528)
+++|+| ++ .++++++.|+.|++||++.++.+..+.... .+..+.+++++ ..+.++..++.
T Consensus 140 ~~~~~~-------~~------~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~------~~l~~~~~~~~ 200 (289)
T cd00200 140 SVAFSP-------DG------TFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDG------EKLLSSSSDGT 200 (289)
T ss_pred EEEEcC-------cC------CEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCc------CEEEEecCCCc
Confidence 999999 77 577777779999999999888877776543 56677777765 34556666899
Q ss_pred ceeeecCCCCceEEeecCCCCeEEEEEeCCe--EEEEECCCeEEEEeCCCCcc--ccCCCccce--EEEccCCceEEEee
Q 009715 447 PSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWMRPGVAE--SQSSSSETV--LSTSSKDKPLLSSK 520 (528)
Q Consensus 447 ~~~~d~~~~~~~~~~~~h~~~V~~l~~s~d~--l~t~s~Dg~i~iW~~~~~~~--~~~~~~~~v--l~~spd~~~l~s~~ 520 (528)
+.+||++..+++..+..|...|.++.|+++. +++++.|+.|++|++..... ....|...+ ++++|++++|++++
T Consensus 201 i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 280 (289)
T cd00200 201 IKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGS 280 (289)
T ss_pred EEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEec
Confidence 9999999988888888899999999999964 66666699999999986542 223555566 88899999999998
Q ss_pred eeccc
Q 009715 521 VVTSS 525 (528)
Q Consensus 521 ~~gs~ 525 (528)
.+|.+
T Consensus 281 ~d~~i 285 (289)
T cd00200 281 ADGTI 285 (289)
T ss_pred CCCeE
Confidence 88754
No 42
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=4.9e-30 Score=257.80 Aligned_cols=263 Identities=16% Similarity=0.233 Sum_probs=222.9
Q ss_pred CCCCCeEEEEecCCcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCC
Q 009715 165 AKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDG 244 (528)
Q Consensus 165 ~~~~~~l~~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~ 244 (528)
||....++++..+|.|++||.+- ......+..|.++|..++|+|+++ +|++|+.|-.|+||+...
T Consensus 18 HP~rPwILtslHsG~IQlWDYRM------------~tli~rFdeHdGpVRgv~FH~~qp-lFVSGGDDykIkVWnYk~-- 82 (1202)
T KOG0292|consen 18 HPKRPWILTSLHSGVIQLWDYRM------------GTLIDRFDEHDGPVRGVDFHPTQP-LFVSGGDDYKIKVWNYKT-- 82 (1202)
T ss_pred CCCCCEEEEeecCceeeeehhhh------------hhHHhhhhccCCccceeeecCCCC-eEEecCCccEEEEEeccc--
Confidence 78999999999999999999876 122233334999999999999999 999999999999999875
Q ss_pred CCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCCCCEEEEEeCCCcEEEEecCCceEEeeecccCCCe
Q 009715 245 AGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGAL 324 (528)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v 324 (528)
.+.+..+.+|-.-|+.+.|++.-.+|+++++|.+|+||+..+.+++..+.+|.-.|
T Consensus 83 ------------------------rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYV 138 (1202)
T KOG0292|consen 83 ------------------------RRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYV 138 (1202)
T ss_pred ------------------------ceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEE
Confidence 34566778899999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCC--------C---------------------eEEEEeecCCCCeEEEEEecCC
Q 009715 325 LCCAWSMDGKYILTGGEDDLVQVWSMED--------R---------------------KVVAWGEGHNSWVSGVAFDSYW 375 (528)
Q Consensus 325 ~~l~~sp~g~~l~sg~~dg~v~vwd~~~--------~---------------------~~~~~~~~h~~~V~~v~f~p~~ 375 (528)
.|.+|+|...++++++-|.+|+|||+.. + -..+.++||...|+-++|+|
T Consensus 139 McAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhp-- 216 (1202)
T KOG0292|consen 139 MCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHP-- 216 (1202)
T ss_pred EeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecC--
Confidence 9999999999999999999999999741 0 02345679999999999999
Q ss_pred CCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEEEeecCCCCCCCeecCCCCCccCCceeeeecCCCCceeeecCCC
Q 009715 376 SQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKL 455 (528)
Q Consensus 376 ~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~d~~~~~g~~~~~~~~~d~~~~ 455 (528)
.- .+|+||++|..|++|.+..-+ .|+
T Consensus 217 -----Tl------pliVSG~DDRqVKlWrmnetK---------------------------------------aWE---- 242 (1202)
T KOG0292|consen 217 -----TL------PLIVSGADDRQVKLWRMNETK---------------------------------------AWE---- 242 (1202)
T ss_pred -----Cc------ceEEecCCcceeeEEEecccc---------------------------------------cee----
Confidence 44 599999999999999976432 222
Q ss_pred CceEEeecCCCCeEEEEEeC--CeEEEEECCCeEEEEeCCCCccccCC--Ccc--ceEEEccCCceEEEeeeecc
Q 009715 456 SPLVAHRVHTEPLSGLIFTQ--ESVLTVCREGHIKIWMRPGVAESQSS--SSE--TVLSTSSKDKPLLSSKVVTS 524 (528)
Q Consensus 456 ~~~~~~~~h~~~V~~l~~s~--d~l~t~s~Dg~i~iW~~~~~~~~~~~--~~~--~vl~~spd~~~l~s~~~~gs 524 (528)
+.+.++|...|+++.|+| +.|++.|.|++|+|||+......+.- ..+ -+++..|..+.++.|+.+|-
T Consensus 243 --vDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgHDsGm 315 (1202)
T KOG0292|consen 243 --VDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGHDSGM 315 (1202)
T ss_pred --ehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeeecCCce
Confidence 234578999999999999 56999999999999999887644432 222 24888999999999988763
No 43
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.4e-29 Score=218.98 Aligned_cols=266 Identities=15% Similarity=0.171 Sum_probs=230.7
Q ss_pred ccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEE
Q 009715 208 VNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAF 287 (528)
Q Consensus 208 ~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 287 (528)
.++++|..+.|+-+|+ +.++++.|.+|++|+.-. ...++.+.+|..+|..++.
T Consensus 15 ~~qgaV~avryN~dGn-Y~ltcGsdrtvrLWNp~r--------------------------g~liktYsghG~EVlD~~~ 67 (307)
T KOG0316|consen 15 CAQGAVRAVRYNVDGN-YCLTCGSDRTVRLWNPLR--------------------------GALIKTYSGHGHEVLDAAL 67 (307)
T ss_pred ccccceEEEEEccCCC-EEEEcCCCceEEeecccc--------------------------cceeeeecCCCceeeeccc
Confidence 3889999999999999 999999999999999765 3568889999999999999
Q ss_pred CCCCCEEEEEeCCCcEEEEecCCceEEeeecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC--eEEEEeecCCCC
Q 009715 288 STDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDR--KVVAWGEGHNSW 365 (528)
Q Consensus 288 spdg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~--~~~~~~~~h~~~ 365 (528)
+.|...|++|+.|..+.+||+++|+.++.+.+|.+.|+.+.|+.+...+++|+.|..+++||.++. ++++.+....+.
T Consensus 68 s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~ 147 (307)
T KOG0316|consen 68 SSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDG 147 (307)
T ss_pred cccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCc
Confidence 999999999999999999999999999999999999999999999999999999999999999874 788999888899
Q ss_pred eEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEEEeecCCCCCCCeecCCCCCccCCceeeeecCCC
Q 009715 366 VSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQP 445 (528)
Q Consensus 366 V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~d~~~~~g~~~~ 445 (528)
|.++.... ..+++|+.||++|.||++.|+....... .++.++.|++++ ....+++++.
T Consensus 148 V~Si~v~~---------------heIvaGS~DGtvRtydiR~G~l~sDy~g-~pit~vs~s~d~------nc~La~~l~s 205 (307)
T KOG0316|consen 148 VSSIDVAE---------------HEIVAGSVDGTVRTYDIRKGTLSSDYFG-HPITSVSFSKDG------NCSLASSLDS 205 (307)
T ss_pred eeEEEecc---------------cEEEeeccCCcEEEEEeecceeehhhcC-CcceeEEecCCC------CEEEEeeccc
Confidence 99999965 5799999999999999999987766554 789999999998 5668899999
Q ss_pred CceeeecCCCCceEEeecCCCCeEEEEE--eC-C-eEEEEECCCeEEEEeCCCCccc-cCCCccce----EEEccCCceE
Q 009715 446 APSMRDVPKLSPLVAHRVHTEPLSGLIF--TQ-E-SVLTVCREGHIKIWMRPGVAES-QSSSSETV----LSTSSKDKPL 516 (528)
Q Consensus 446 ~~~~~d~~~~~~~~~~~~h~~~V~~l~~--s~-d-~l~t~s~Dg~i~iW~~~~~~~~-~~~~~~~v----l~~spd~~~l 516 (528)
.+++.|..+++.+..+++|...-+.+.. +. + .+++|+.||.|.+||+....+. ...+...+ +++.|....+
T Consensus 206 tlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f 285 (307)
T KOG0316|consen 206 TLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDF 285 (307)
T ss_pred eeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccce
Confidence 9999999999999999999886555443 33 2 4999999999999998766543 33444433 6677887776
Q ss_pred EEeeee
Q 009715 517 LSSKVV 522 (528)
Q Consensus 517 ~s~~~~ 522 (528)
+++...
T Consensus 286 ~~A~~~ 291 (307)
T KOG0316|consen 286 ITATGH 291 (307)
T ss_pred eEecCC
Confidence 666544
No 44
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.97 E-value=1.3e-29 Score=253.99 Aligned_cols=373 Identities=18% Similarity=0.226 Sum_probs=280.0
Q ss_pred hhhhhhhhcCCCCCceeeccCCCCCCCccccCCcccCCcccCCCCCCcceeeeCCCccEEEEeCCCcEEEEeCCCCCCC-
Q 009715 86 VRSAAAKLLGTGNGSRTLGFGGGNGGSKSISGSSRIGSLGASSSSTSMTNTNFDGKGTYIIFNVGDAIFISDLNSQDKD- 164 (528)
Q Consensus 86 ~~~~~~~~~~~~~g~~~~sf~gh~~~v~~v~~s~~~~~~~~s~s~~s~~~~~~~~~g~~~~~~~~~~i~v~~~~~~~~~- 164 (528)
+.....++|+..++++++.|.++...|+++..+|...-+..+.- +|+++++|....-.+..++.....
T Consensus 179 s~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~-----------~G~ViifNlK~dkil~sFk~d~g~V 247 (910)
T KOG1539|consen 179 SSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLE-----------NGTVIIFNLKFDKILMSFKQDWGRV 247 (910)
T ss_pred ecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEecc-----------CceEEEEEcccCcEEEEEEccccce
Confidence 34567899999999999999999999999999996654444333 799999998877766666654222
Q ss_pred -----CCCCCe-EEEEecCCcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeCCceEEEE
Q 009715 165 -----AKDGHD-LLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVY 238 (528)
Q Consensus 165 -----~~~~~~-l~~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vw 238 (528)
..||+. |++|...|.+.+||++.+ ++... ....|.+.|....|.|..+ ++++++.|..+++|
T Consensus 248 tslSFrtDG~p~las~~~~G~m~~wDLe~k------kl~~v-----~~nah~~sv~~~~fl~~ep-Vl~ta~~DnSlk~~ 315 (910)
T KOG1539|consen 248 TSLSFRTDGNPLLASGRSNGDMAFWDLEKK------KLINV-----TRNAHYGSVTGATFLPGEP-VLVTAGADNSLKVW 315 (910)
T ss_pred eEEEeccCCCeeEEeccCCceEEEEEcCCC------eeeee-----eeccccCCcccceecCCCc-eEeeccCCCceeEE
Confidence 455665 567778899999999862 11111 1123888999999999999 99999999999999
Q ss_pred EcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEEC-CCCCEEEEEeCCCcEEEEe----------
Q 009715 239 EKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFS-TDGTYLATVGRDGYLRVFD---------- 307 (528)
Q Consensus 239 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s-pdg~~l~s~~~dg~i~vwd---------- 307 (528)
-.+++... -+.++.-.+|..+..||.|. .+|..+.+++.|++++.++
T Consensus 316 vfD~~dg~----------------------pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l 373 (910)
T KOG1539|consen 316 VFDSGDGV----------------------PRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQEL 373 (910)
T ss_pred EeeCCCCc----------------------chheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhh
Confidence 87753221 12223334455555555555 3455555555555544444
Q ss_pred -------------------------------------------------------cCCceE-Eeee-----cccCCCeEE
Q 009715 308 -------------------------------------------------------YSKEQL-ICGG-----KSYYGALLC 326 (528)
Q Consensus 308 -------------------------------------------------------~~~~~~-~~~~-----~~~~~~v~~ 326 (528)
+++... ...+ +.....+++
T Consensus 374 ~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~a 453 (910)
T KOG1539|consen 374 GQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATA 453 (910)
T ss_pred cccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEE
Confidence 432211 0111 112356889
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEe---ecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEE
Q 009715 327 CAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWG---EGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLW 403 (528)
Q Consensus 327 l~~sp~g~~l~sg~~dg~v~vwd~~~~~~~~~~---~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lw 403 (528)
++.++.|++.+.|...|.|.+|++++|-....+ ..|..+|++++.+. -+ +.+++++.||-+++|
T Consensus 454 v~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~-------~n------~~~vsa~~~Gilkfw 520 (910)
T KOG1539|consen 454 VCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDG-------TN------RLLVSAGADGILKFW 520 (910)
T ss_pred EEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecC-------CC------ceEEEccCcceEEEE
Confidence 999999999999999999999999999888777 47999999999965 34 689999999999999
Q ss_pred EccCCeEEEEeecCCCCCCCeecCCCCCccCCceeeeecCCCCceeeecCCCCceEEeecCCCCeEEEEEeCCe--EEEE
Q 009715 404 DLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTV 481 (528)
Q Consensus 404 d~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~~s~d~--l~t~ 481 (528)
|+.....+..++.......+...... ..+.+...+..+.++|+.+.+.++.+.+|.+.|+++.|+||+ |+++
T Consensus 521 ~f~~k~l~~~l~l~~~~~~iv~hr~s------~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisa 594 (910)
T KOG1539|consen 521 DFKKKVLKKSLRLGSSITGIVYHRVS------DLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISA 594 (910)
T ss_pred ecCCcceeeeeccCCCcceeeeeehh------hhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEe
Confidence 99999988888766555554443332 334666778889999999999999999999999999999996 9999
Q ss_pred ECCCeEEEEeCCCCccccCCCcc---ceEEEccCCceEEEeeee
Q 009715 482 CREGHIKIWMRPGVAESQSSSSE---TVLSTSSKDKPLLSSKVV 522 (528)
Q Consensus 482 s~Dg~i~iW~~~~~~~~~~~~~~---~vl~~spd~~~l~s~~~~ 522 (528)
+.|++||+||+++......-+-+ .-+++||+|.+||+.+++
T Consensus 595 smD~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd 638 (910)
T KOG1539|consen 595 SMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVD 638 (910)
T ss_pred ecCCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEEec
Confidence 99999999999998755443222 229999999999999988
No 45
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3.8e-30 Score=224.88 Aligned_cols=282 Identities=21% Similarity=0.354 Sum_probs=213.5
Q ss_pred ccccCCcccCCcccCCCCCCcceeeeCCCccEEEEeCCC--cE-EEEeCCCCCCC------CCCCCeEEEEecCCcEEEE
Q 009715 113 KSISGSSRIGSLGASSSSTSMTNTNFDGKGTYIIFNVGD--AI-FISDLNSQDKD------AKDGHDLLIGLNSGDVYSV 183 (528)
Q Consensus 113 ~~v~~s~~~~~~~~s~s~~s~~~~~~~~~g~~~~~~~~~--~i-~v~~~~~~~~~------~~~~~~l~~g~~~G~v~iw 183 (528)
.++.|||-..+.++-.. ..+.-..+.|++.+.+..+ .+ .+..+...+.. ....+.++++..||.+++|
T Consensus 12 ysvqfSPf~~nrLavAt---~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~ 88 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVAT---AQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLF 88 (311)
T ss_pred ceeEecccccchhheee---hhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEe
Confidence 34777775553333222 1123334567777776642 22 22222222222 4467789999999999999
Q ss_pred EccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEec
Q 009715 184 SLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAH 263 (528)
Q Consensus 184 d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 263 (528)
|+.. +.+.+. .| +.|+..|.++.|++-....+++++.||+|++|+...
T Consensus 89 d~~~----~s~Pi~---~~----kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r--------------------- 136 (311)
T KOG0277|consen 89 DLTM----PSKPIH---KF----KEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNR--------------------- 136 (311)
T ss_pred ccCC----CCcchh---HH----HhhhhheEEeccccccceeEEeeccCCceEeecCCC---------------------
Confidence 9654 111111 12 229999999999997776899999999999999875
Q ss_pred cCCCCCCCeEEEeecCCCeEEEEECC-CCCEEEEEeCCCcEEEEecCCceEEeeecccCCCeEEEEEcC-CCCEEEEEeC
Q 009715 264 PRYSKSNPIARWHICQGSINSIAFST-DGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSM-DGKYILTGGE 341 (528)
Q Consensus 264 ~~~~~~~~~~~~~~h~~~v~~l~~sp-dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp-~g~~l~sg~~ 341 (528)
.+.+..+.+|...|+..+|+| ..+.+++++.|+.+++||++.......+..|...++|+.|+. +...+++|+.
T Consensus 137 -----~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~v 211 (311)
T KOG0277|consen 137 -----PNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGV 211 (311)
T ss_pred -----CcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCC
Confidence 367888999999999999999 789999999999999999986544444888999999999998 6678899999
Q ss_pred CCcEEEEECCC-CeEEEEeecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEEEeecCCCC
Q 009715 342 DDLVQVWSMED-RKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLG 420 (528)
Q Consensus 342 dg~v~vwd~~~-~~~~~~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~ 420 (528)
|+.|++||++. +.++..+.+|.-.|..|.|+|+ .. .+|++++.|-++||||...+...
T Consensus 212 d~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph------~~------~lLaSasYDmT~riw~~~~~ds~--------- 270 (311)
T KOG0277|consen 212 DNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPH------HA------SLLASASYDMTVRIWDPERQDSA--------- 270 (311)
T ss_pred CceEEEEehhhccccceeecCCceEEEEEecCcc------hh------hHhhhccccceEEecccccchhh---------
Confidence 99999999998 4678889999999999999994 22 58999999999999998754321
Q ss_pred CCCeecCCCCCccCCceeeeecCCCCceeeecCCCCceEEeecCCCCeEEEEEeC---CeEEEEECCCeEEEEeC
Q 009715 421 GSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQ---ESVLTVCREGHIKIWMR 492 (528)
Q Consensus 421 ~~~~~s~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~~s~---d~l~t~s~Dg~i~iW~~ 492 (528)
+.+..-|++-|..+.|++ ..+++++.|+.++||+.
T Consensus 271 -------------------------------------~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 271 -------------------------------------IETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred -------------------------------------hhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 112234888889999987 35999999999999984
No 46
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.97 E-value=3.6e-29 Score=223.87 Aligned_cols=270 Identities=14% Similarity=0.162 Sum_probs=224.0
Q ss_pred CCCCCeEEEEecCCcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCC
Q 009715 165 AKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDG 244 (528)
Q Consensus 165 ~~~~~~l~~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~ 244 (528)
+|+|..|++|+.|..|.+|++....++. ... ..|.++|..+.|.+++. .+++++.|.+|+.||.+++
T Consensus 56 ~P~gs~~aSgG~Dr~I~LWnv~gdceN~-------~~l----kgHsgAVM~l~~~~d~s-~i~S~gtDk~v~~wD~~tG- 122 (338)
T KOG0265|consen 56 HPDGSCFASGGSDRAIVLWNVYGDCENF-------WVL----KGHSGAVMELHGMRDGS-HILSCGTDKTVRGWDAETG- 122 (338)
T ss_pred CCCCCeEeecCCcceEEEEeccccccce-------eee----ccccceeEeeeeccCCC-EEEEecCCceEEEEecccc-
Confidence 4899999999999999999977522211 111 14999999999999999 8999999999999999873
Q ss_pred CCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCCC-CEEEEEeCCCcEEEEecCCceEEeeecccCCC
Q 009715 245 AGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDG-TYLATVGRDGYLRVFDYSKEQLICGGKSYYGA 323 (528)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spdg-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~ 323 (528)
+.++..++|...|+.+.-+.-| .++.+++.|+++++||+++.+.++++. ....
T Consensus 123 -------------------------~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyq 176 (338)
T KOG0265|consen 123 -------------------------KRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQ 176 (338)
T ss_pred -------------------------eeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-ccee
Confidence 4567778889999999854444 466778899999999999998888775 3567
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEE
Q 009715 324 LLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLW 403 (528)
Q Consensus 324 v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lw 403 (528)
++++.|..++..+.+|+-|+.|++||++.....+.+.||.+.|+.+..+| +| .++.+-+.|.++++|
T Consensus 177 ltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~-------~g------s~llsnsMd~tvrvw 243 (338)
T KOG0265|consen 177 LTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSR-------YG------SFLLSNSMDNTVRVW 243 (338)
T ss_pred EEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEecc-------CC------CccccccccceEEEE
Confidence 99999999999999999999999999999999999999999999999999 88 799999999999999
Q ss_pred EccCC----eEEEEeecCC-----CCCCCeecCCCCCccCCceeeeecCCCCceeeecCCCCceEEeecCCCCeEEEEEe
Q 009715 404 DLEMD----EIVVPLRRGP-----LGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFT 474 (528)
Q Consensus 404 d~~~~----~~~~~~~~~~-----~~~~~~~s~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~~s 474 (528)
|++.. +++..+.... ..-...+++++ ..+..|+.+..+.+||......+..+.+|.+.|.+++|+
T Consensus 244 d~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~------~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fh 317 (338)
T KOG0265|consen 244 DVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNG------TKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFH 317 (338)
T ss_pred EecccCCCCceEEEeecchhhhhhhcceeeccCCC------CccccccccceEEEeecccccEEEEcCCcceeEEEeeec
Confidence 99753 3455554321 11123344444 445778889999999999999999999999999999999
Q ss_pred CC--eEEEEECCCeEEEEeC
Q 009715 475 QE--SVLTVCREGHIKIWMR 492 (528)
Q Consensus 475 ~d--~l~t~s~Dg~i~iW~~ 492 (528)
|. .|.+++.|.+|.+=.+
T Consensus 318 p~e~iils~~sdk~i~lgei 337 (338)
T KOG0265|consen 318 PTEPIILSCSSDKTIYLGEI 337 (338)
T ss_pred CCCcEEEEeccCceeEeecc
Confidence 96 4999999999987443
No 47
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=4.9e-31 Score=239.60 Aligned_cols=261 Identities=16% Similarity=0.235 Sum_probs=207.3
Q ss_pred CccEEEEeCCCcEEEEeCCCCCCC----CCCCCeEEEEecCCcEEEEEccccccccccceeeeeeeccCCcccCCceeEE
Q 009715 141 KGTYIIFNVGDAIFISDLNSQDKD----AKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSV 216 (528)
Q Consensus 141 ~g~~~~~~~~~~i~v~~~~~~~~~----~~~~~~l~~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 216 (528)
|.++.+|+......++-+.++... ..+.+.+++|++|.+|.+||+.+ ++ ..+..-.|...|..+
T Consensus 216 DnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~rviisGSSDsTvrvWDv~t-----ge-------~l~tlihHceaVLhl 283 (499)
T KOG0281|consen 216 DNTIKIWDKNSLECLKILTGHTGSVLCLQYDERVIVSGSSDSTVRVWDVNT-----GE-------PLNTLIHHCEAVLHL 283 (499)
T ss_pred cCceEEeccccHHHHHhhhcCCCcEEeeeccceEEEecCCCceEEEEeccC-----Cc-------hhhHHhhhcceeEEE
Confidence 566666665443333333333222 67888999999999999999987 11 222222389999999
Q ss_pred EEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCCCCEEEE
Q 009715 217 TWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLAT 296 (528)
Q Consensus 217 ~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s 296 (528)
.|+.. ++++++.|.++.|||+..... ....+.+.+|..+|+.+.|+ .+++++
T Consensus 284 rf~ng---~mvtcSkDrsiaVWdm~sps~-----------------------it~rrVLvGHrAaVNvVdfd--~kyIVs 335 (499)
T KOG0281|consen 284 RFSNG---YMVTCSKDRSIAVWDMASPTD-----------------------ITLRRVLVGHRAAVNVVDFD--DKYIVS 335 (499)
T ss_pred EEeCC---EEEEecCCceeEEEeccCchH-----------------------HHHHHHHhhhhhheeeeccc--cceEEE
Confidence 99754 899999999999999975321 12234567788999999995 569999
Q ss_pred EeCCCcEEEEecCCceEEeeecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCeEEEEEecCCC
Q 009715 297 VGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWS 376 (528)
Q Consensus 297 ~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~v~f~p~~~ 376 (528)
++.|.+|++|++.+++++.++.+|...|-|+.+ .++++++|+.|.+|++||++.|.+++.++||+.-|.++.|+.
T Consensus 336 ASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd~--- 410 (499)
T KOG0281|consen 336 ASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDN--- 410 (499)
T ss_pred ecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeecC---
Confidence 999999999999999999999999999999887 589999999999999999999999999999999999999964
Q ss_pred CCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEEEeecCCCCCCCeecCCCCCccCCceeeeecCCCCceeeecCCCC
Q 009715 377 QPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLS 456 (528)
Q Consensus 377 ~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~ 456 (528)
.++++|+.||+|++||+..+..-.... .. -
T Consensus 411 ------------krIVSGaYDGkikvWdl~aaldpra~~-----~~---------------------------------~ 440 (499)
T KOG0281|consen 411 ------------KRIVSGAYDGKIKVWDLQAALDPRAPA-----ST---------------------------------L 440 (499)
T ss_pred ------------ceeeeccccceEEEEecccccCCcccc-----cc---------------------------------h
Confidence 689999999999999997654221110 00 1
Q ss_pred ceEEeecCCCCeEEEEEeCCeEEEEECCCeEEEEeCCCCc
Q 009715 457 PLVAHRVHTEPLSGLIFTQESVLTVCREGHIKIWMRPGVA 496 (528)
Q Consensus 457 ~~~~~~~h~~~V~~l~~s~d~l~t~s~Dg~i~iW~~~~~~ 496 (528)
++..+..|.+.|..+.|..-.|++++.|.+|-|||+..+.
T Consensus 441 Cl~~lv~hsgRVFrLQFD~fqIvsssHddtILiWdFl~~~ 480 (499)
T KOG0281|consen 441 CLRTLVEHSGRVFRLQFDEFQIISSSHDDTILIWDFLNGP 480 (499)
T ss_pred HHHhhhhccceeEEEeecceEEEeccCCCeEEEEEcCCCC
Confidence 2334556999999999999899999999999999986554
No 48
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=3.3e-28 Score=267.41 Aligned_cols=305 Identities=13% Similarity=0.148 Sum_probs=225.4
Q ss_pred hhhhhcCCCCCcee-----eccCCCCCCCccccCCcccCCcccCCCCCCcceeeeCCCccEEEEeCCCcE--------EE
Q 009715 89 AAAKLLGTGNGSRT-----LGFGGGNGGSKSISGSSRIGSLGASSSSTSMTNTNFDGKGTYIIFNVGDAI--------FI 155 (528)
Q Consensus 89 ~~~~~~~~~~g~~~-----~sf~gh~~~v~~v~~s~~~~~~~~s~s~~s~~~~~~~~~g~~~~~~~~~~i--------~v 155 (528)
.-.++|....-... ..+.+|.+.|.+++|++ ++.++++++. |+.+.+|+..... .+
T Consensus 458 gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~-dg~~latgg~----------D~~I~iwd~~~~~~~~~~~~~~~ 526 (793)
T PLN00181 458 GLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDR-DGEFFATAGV----------NKKIKIFECESIIKDGRDIHYPV 526 (793)
T ss_pred hhhhhhcccceEEEEeeccccccCCCCcEEEEEECC-CCCEEEEEeC----------CCEEEEEECCcccccccccccce
Confidence 34566666653322 23456999999999998 6666666664 7888888754210 11
Q ss_pred EeCCCCCCC------CCCCCeEEEEecCCcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEee-CCCcEEEE
Q 009715 156 SDLNSQDKD------AKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVP-GGDGAFVV 228 (528)
Q Consensus 156 ~~~~~~~~~------~~~~~~l~~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p-~g~~~l~t 228 (528)
..+...... .+++..|++++.||.|++||+.+. +.+ .....|...|++++|+| ++. +|++
T Consensus 527 ~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~-----~~~-------~~~~~H~~~V~~l~~~p~~~~-~L~S 593 (793)
T PLN00181 527 VELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARS-----QLV-------TEMKEHEKRVWSIDYSSADPT-LLAS 593 (793)
T ss_pred EEecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCC-----eEE-------EEecCCCCCEEEEEEcCCCCC-EEEE
Confidence 111111111 345788999999999999999752 111 11224999999999997 566 9999
Q ss_pred EeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECC-CCCEEEEEeCCCcEEEEe
Q 009715 229 GHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST-DGTYLATVGRDGYLRVFD 307 (528)
Q Consensus 229 g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp-dg~~l~s~~~dg~i~vwd 307 (528)
|+.||+|++||+... ..+..+..+ ..|.++.|++ ++.+|++|+.|+.|++||
T Consensus 594 gs~Dg~v~iWd~~~~--------------------------~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD 646 (793)
T PLN00181 594 GSDDGSVKLWSINQG--------------------------VSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYD 646 (793)
T ss_pred EcCCCEEEEEECCCC--------------------------cEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEE
Confidence 999999999999752 123333333 5789999964 799999999999999999
Q ss_pred cCCce-EEeeecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC------CeEEEEeecCCCCeEEEEEecCCCCCCC
Q 009715 308 YSKEQ-LICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMED------RKVVAWGEGHNSWVSGVAFDSYWSQPNS 380 (528)
Q Consensus 308 ~~~~~-~~~~~~~~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~------~~~~~~~~~h~~~V~~v~f~p~~~~~~~ 380 (528)
+++.+ .+..+.+|...|.++.|. ++.+|++++.|+.|+|||++. .+++..+.+|...+..++|+|
T Consensus 647 ~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~------- 718 (793)
T PLN00181 647 LRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSV------- 718 (793)
T ss_pred CCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcC-------
Confidence 98765 466778899999999997 778999999999999999974 357888999999999999999
Q ss_pred CCCccceeEEEEEEeCCCeEEEEEccCCeEEEEeecCCCCCCCeecCCCCCccCCceeeeecCCCCceeeecCCCCceEE
Q 009715 381 DGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVA 460 (528)
Q Consensus 381 dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~ 460 (528)
++ .+|++|+.|+.|++|+......+..+....... ..-..
T Consensus 719 ~~------~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~----------------------------------~~~~~ 758 (793)
T PLN00181 719 SD------GYIATGSETNEVFVYHKAFPMPVLSYKFKTIDP----------------------------------VSGLE 758 (793)
T ss_pred CC------CEEEEEeCCCEEEEEECCCCCceEEEecccCCc----------------------------------ccccc
Confidence 88 699999999999999987765443332100000 00001
Q ss_pred eecCCCCeEEEEEeCCe--EEEEECCCeEEEEeC
Q 009715 461 HRVHTEPLSGLIFTQES--VLTVCREGHIKIWMR 492 (528)
Q Consensus 461 ~~~h~~~V~~l~~s~d~--l~t~s~Dg~i~iW~~ 492 (528)
...|...|.+++|++++ |++++.||.|+||++
T Consensus 759 ~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 759 VDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred cCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 22466789999999974 999999999999996
No 49
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=8.6e-28 Score=264.11 Aligned_cols=274 Identities=17% Similarity=0.207 Sum_probs=213.9
Q ss_pred CCCCCeEEEEecCCcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCC
Q 009715 165 AKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDG 244 (528)
Q Consensus 165 ~~~~~~l~~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~ 244 (528)
++++++|++|+.||.|++||+................ ..+...|.+++|++....+|++++.||+|++||+.+
T Consensus 492 s~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~-----~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~-- 564 (793)
T PLN00181 492 DRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVE-----LASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVAR-- 564 (793)
T ss_pred CCCCCEEEEEeCCCEEEEEECCcccccccccccceEE-----ecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCC--
Confidence 6899999999999999999986421110000000000 114568999999986544899999999999999875
Q ss_pred CCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECC-CCCEEEEEeCCCcEEEEecCCceEEeeecccCCC
Q 009715 245 AGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST-DGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGA 323 (528)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp-dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~ 323 (528)
.+.+..+.+|.+.|++++|+| ++.+|++++.|+.|++||+.+++.+..+..+ ..
T Consensus 565 ------------------------~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~ 619 (793)
T PLN00181 565 ------------------------SQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-AN 619 (793)
T ss_pred ------------------------CeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CC
Confidence 234566778999999999997 8899999999999999999999888887644 67
Q ss_pred eEEEEEc-CCCCEEEEEeCCCcEEEEECCCCe-EEEEeecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEE
Q 009715 324 LLCCAWS-MDGKYILTGGEDDLVQVWSMEDRK-VVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLL 401 (528)
Q Consensus 324 v~~l~~s-p~g~~l~sg~~dg~v~vwd~~~~~-~~~~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~ 401 (528)
+.++.|+ +++.+|++|+.|+.|++||++..+ ++..+.+|...|.++.|.+ + ..|++++.|++|+
T Consensus 620 v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~--------~------~~lvs~s~D~~ik 685 (793)
T PLN00181 620 ICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVD--------S------STLVSSSTDNTLK 685 (793)
T ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeC--------C------CEEEEEECCCEEE
Confidence 9999995 579999999999999999998865 5677889999999999964 3 4799999999999
Q ss_pred EEEccCCeEEEEeecCCCCCCCeecCCCCCccCCceeeeecCCCCceeeecCCCCceEEeecCCCCeEEEEEeCC--eEE
Q 009715 402 LWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE--SVL 479 (528)
Q Consensus 402 lwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~~s~d--~l~ 479 (528)
+||++..... ....++..+.+|...+..+.|+++ .|+
T Consensus 686 iWd~~~~~~~-----------------------------------------~~~~~l~~~~gh~~~i~~v~~s~~~~~la 724 (793)
T PLN00181 686 LWDLSMSISG-----------------------------------------INETPLHSFMGHTNVKNFVGLSVSDGYIA 724 (793)
T ss_pred EEeCCCCccc-----------------------------------------cCCcceEEEcCCCCCeeEEEEcCCCCEEE
Confidence 9998753200 011345567789999999999996 499
Q ss_pred EEECCCeEEEEeCCCCccc---------------cCCCccce--EEEccCCceEEEeeeeccc
Q 009715 480 TVCREGHIKIWMRPGVAES---------------QSSSSETV--LSTSSKDKPLLSSKVVTSS 525 (528)
Q Consensus 480 t~s~Dg~i~iW~~~~~~~~---------------~~~~~~~v--l~~spd~~~l~s~~~~gs~ 525 (528)
+|+.|+.|++|+....... ...+.+.| ++|+|++++|++++.+|.+
T Consensus 725 sgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I 787 (793)
T PLN00181 725 TGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNI 787 (793)
T ss_pred EEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcE
Confidence 9999999999997543211 01233345 8889999999999988765
No 50
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=5e-29 Score=245.48 Aligned_cols=271 Identities=18% Similarity=0.282 Sum_probs=229.0
Q ss_pred CCCeEEEEecCCcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCC
Q 009715 167 DGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAG 246 (528)
Q Consensus 167 ~~~~l~~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~ 246 (528)
..+.|++|... .|++|+..+. +. .. + ...+...|+++.|+++|. +|++|..+|.|.|||....
T Consensus 187 s~n~laValg~-~vylW~~~s~-----~v-~~-l-----~~~~~~~vtSv~ws~~G~-~LavG~~~g~v~iwD~~~~--- 249 (484)
T KOG0305|consen 187 SANVLAVALGQ-SVYLWSASSG-----SV-TE-L-----CSFGEELVTSVKWSPDGS-HLAVGTSDGTVQIWDVKEQ--- 249 (484)
T ss_pred cCCeEEEEecc-eEEEEecCCC-----ce-EE-e-----EecCCCceEEEEECCCCC-EEEEeecCCeEEEEehhhc---
Confidence 55677777765 7999997761 11 00 0 011367899999999999 9999999999999998752
Q ss_pred CCccccccccceeEEeccCCCCCCCeEEEee-cCCCeEEEEECCCCCEEEEEeCCCcEEEEecCCceEEee-ecccCCCe
Q 009715 247 DSSFPVIKDQTQFSVAHPRYSKSNPIARWHI-CQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICG-GKSYYGAL 324 (528)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~spdg~~l~s~~~dg~i~vwd~~~~~~~~~-~~~~~~~v 324 (528)
+.+..+.+ |...|-+++|. +..+.+|+.|+.|..+|++..+.... +.+|...|
T Consensus 250 -----------------------k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeV 304 (484)
T KOG0305|consen 250 -----------------------KKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEV 304 (484)
T ss_pred -----------------------cccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhccccee
Confidence 33444555 88999999997 66899999999999999998776555 78899999
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEe--CCCeEEE
Q 009715 325 LCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVG--QDTRLLL 402 (528)
Q Consensus 325 ~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s--~D~~i~l 402 (528)
..+.|++|+.++|+|+.|+.+.|||....+++..+..|...|.+++|+|+ . . .+||+|+ .|+.|++
T Consensus 305 CgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~-q----~-------~lLAsGGGs~D~~i~f 372 (484)
T KOG0305|consen 305 CGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPW-Q----S-------GLLATGGGSADRCIKF 372 (484)
T ss_pred eeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCC-c----c-------CceEEcCCCcccEEEE
Confidence 99999999999999999999999999888899999999999999999994 1 2 4788885 7999999
Q ss_pred EEccCCeEEEEeecCCCCCCCeecCCCCCccCCceeeeecCCCCceeeecCCCCceEEeecCCCCeEEEEEeCCe--EEE
Q 009715 403 WDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLT 480 (528)
Q Consensus 403 wd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~~s~d~--l~t 480 (528)
||..+++.+..+..+..+..+.+++... ......|.-+..+.+|+.++.+++..+.+|...|..++++||+ |++
T Consensus 373 wn~~~g~~i~~vdtgsQVcsL~Wsk~~k----Ei~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t 448 (484)
T KOG0305|consen 373 WNTNTGARIDSVDTGSQVCSLIWSKKYK----ELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVT 448 (484)
T ss_pred EEcCCCcEecccccCCceeeEEEcCCCC----EEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEE
Confidence 9999999999999888999999987652 1222566677789999999999999999999999999999985 999
Q ss_pred EECCCeEEEEeCCCC
Q 009715 481 VCREGHIKIWMRPGV 495 (528)
Q Consensus 481 ~s~Dg~i~iW~~~~~ 495 (528)
|+.|.++++|++-..
T Consensus 449 ~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 449 GAADETLRFWNLFDE 463 (484)
T ss_pred ecccCcEEeccccCC
Confidence 999999999998664
No 51
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=2.4e-28 Score=240.41 Aligned_cols=422 Identities=16% Similarity=0.168 Sum_probs=289.1
Q ss_pred hhhhhhhcCCCCCceeeccCCCCCCCccccCCcccCCcccCCC-CCCcc----------------------eeeeCCCcc
Q 009715 87 RSAAAKLLGTGNGSRTLGFGGGNGGSKSISGSSRIGSLGASSS-STSMT----------------------NTNFDGKGT 143 (528)
Q Consensus 87 ~~~~~~~~~~~~g~~~~sf~gh~~~v~~v~~s~~~~~~~~s~s-~~s~~----------------------~~~~~~~g~ 143 (528)
..+|.++|+...-..+..|..|.=.|+|++|+| .+.+++|-+ .+... .+++..||.
T Consensus 100 ~~pa~kVw~la~h~vVAEfvdHKY~vtcvaFsp-~~kyvvSVGsQHDMIVnv~dWr~N~~~asnkiss~Vsav~fsEdgS 178 (1080)
T KOG1408|consen 100 RTPASKVWSLAFHGVVAEFVDHKYNVTCVAFSP-GNKYVVSVGSQHDMIVNVNDWRVNSSGASNKISSVVSAVAFSEDGS 178 (1080)
T ss_pred CCccceeeeeccccchhhhhhccccceeeeecC-CCcEEEeeccccceEEEhhhhhhcccccccccceeEEEEEEccCCc
Confidence 578999999999888899999999999999999 665555433 22222 347789999
Q ss_pred EEEEeCCCcEEEEeCCCCCCC-----------------------------------------------------------
Q 009715 144 YIIFNVGDAIFISDLNSQDKD----------------------------------------------------------- 164 (528)
Q Consensus 144 ~~~~~~~~~i~v~~~~~~~~~----------------------------------------------------------- 164 (528)
+.+....+.+..|.+....+-
T Consensus 179 YfvT~gnrHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSsRRLLDKWVqc 258 (1080)
T KOG1408|consen 179 YFVTSGNRHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSSRRLLDKWVQC 258 (1080)
T ss_pred eeeeeeeeeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCcccccceEEEecccceeeechhhhhhhhhhh
Confidence 999888889999988876532
Q ss_pred --------CCCCCeEEEEecCCcEEEEEcccc-----ccc-------------ccc--------cee--eeeeeccC---
Q 009715 165 --------AKDGHDLLIGLNSGDVYSVSLRQQ-----LQD-------------VGK--------KLV--GAHHYNKD--- 205 (528)
Q Consensus 165 --------~~~~~~l~~g~~~G~v~iwd~~~~-----~~~-------------~~~--------~~~--~~~~~~~~--- 205 (528)
.-..+++++|..+|.|++|+..+. +.. +.. ... -...|.+.
T Consensus 259 RTTnAnCIcVs~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~k 338 (1080)
T KOG1408|consen 259 RTTNANCICVSSRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDK 338 (1080)
T ss_pred hccccceeeeecceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCce
Confidence 114455666666666666654321 000 000 000 00011100
Q ss_pred --------------------------CcccCCceeEEEEeeCC----------CcEEEEEeCCceEEEEEcCCCCCCCC-
Q 009715 206 --------------------------GSVNNSRCTSVTWVPGG----------DGAFVVGHADGNLYVYEKSKDGAGDS- 248 (528)
Q Consensus 206 --------------------------~~~h~~~v~~l~~~p~g----------~~~l~tg~~dg~v~vwd~~~~~~~~~- 248 (528)
..-|...|+.+.--|-. +.-|++++.|++|++|++........
T Consensus 339 lscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vy 418 (1080)
T KOG1408|consen 339 LSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVY 418 (1080)
T ss_pred EEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeeccccccccee
Confidence 00277777777665511 11599999999999999976221111
Q ss_pred --c--------cccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCCCCEEEEEeCCCcEEEEecCCceEEeeec
Q 009715 249 --S--------FPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGK 318 (528)
Q Consensus 249 --~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~~~dg~i~vwd~~~~~~~~~~~ 318 (528)
. ++-.....++..........+...........+++++.+|+|++||+|..-|.|+||++..-+....+.
T Consensus 419 rRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~e 498 (1080)
T KOG1408|consen 419 RRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFME 498 (1080)
T ss_pred ecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhhee
Confidence 0 000000111111111111111111222234679999999999999999999999999999999889999
Q ss_pred ccCCCeEEEEEcC---CCCEEEEEeCCCcEEEEECCCC-eEEEEeecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEE
Q 009715 319 SYYGALLCCAWSM---DGKYILTGGEDDLVQVWSMEDR-KVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSV 394 (528)
Q Consensus 319 ~~~~~v~~l~~sp---~g~~l~sg~~dg~v~vwd~~~~-~~~~~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~ 394 (528)
.|...|.|+.++. ..++||+++.|..|+|||+... .++.++.+|...|++|.|.- +| ....++++
T Consensus 499 AHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~-------~g----ln~~Misc 567 (1080)
T KOG1408|consen 499 AHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFAC-------NG----LNRKMISC 567 (1080)
T ss_pred cccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEee-------cC----CceEEEec
Confidence 9999999999985 3468999999999999999764 57788999999999999976 44 11689999
Q ss_pred eCCCeEEEEEccCCeEEEEeecCC------CCCCCeecCCCCCccCCceeeeecCCCCceeeecCCCCceEEeec---CC
Q 009715 395 GQDTRLLLWDLEMDEIVVPLRRGP------LGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRV---HT 465 (528)
Q Consensus 395 s~D~~i~lwd~~~~~~~~~~~~~~------~~~~~~~s~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~---h~ 465 (528)
+.|..|.+=-.........+..+. ....+.+-+. -..+.+++.|..+++|++...+....+++ |+
T Consensus 568 GADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~------~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~e 641 (1080)
T KOG1408|consen 568 GADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPT------SKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHE 641 (1080)
T ss_pred cCchhhheehhccccCceeccccccccccceEEEeeeCCC------cceEEEEecccceEEEeccccceeeeecccccCC
Confidence 999887543222111111121111 1111222222 25568899999999999999999988875 66
Q ss_pred CCeEEEEEeCC--eEEEEECCCeEEEEeCCCCcc--ccCCCccce--EEEccCCceEEEeeeecccc
Q 009715 466 EPLSGLIFTQE--SVLTVCREGHIKIWMRPGVAE--SQSSSSETV--LSTSSKDKPLLSSKVVTSSY 526 (528)
Q Consensus 466 ~~V~~l~~s~d--~l~t~s~Dg~i~iW~~~~~~~--~~~~~~~~v--l~~spd~~~l~s~~~~gs~~ 526 (528)
+..-.+...|. +|+|.+.|.+|.++|+.+++. ...+|.+.| +.|++|-|.|++...+|=+|
T Consensus 642 G~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIF 708 (1080)
T KOG1408|consen 642 GDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIF 708 (1080)
T ss_pred CceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEE
Confidence 77888999997 499999999999999988874 456899988 99999999999988776554
No 52
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.97 E-value=5.5e-30 Score=242.53 Aligned_cols=240 Identities=20% Similarity=0.343 Sum_probs=208.5
Q ss_pred CcccCCceeEEEEee-CCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEE
Q 009715 206 GSVNNSRCTSVTWVP-GGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINS 284 (528)
Q Consensus 206 ~~~h~~~v~~l~~~p-~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 284 (528)
...|...|+++.|.| .+. +|++++.|+.|+||++..+ ...++.+.+|..+|..
T Consensus 210 ~~gH~kgvsai~~fp~~~h-LlLS~gmD~~vklW~vy~~-------------------------~~~lrtf~gH~k~Vrd 263 (503)
T KOG0282|consen 210 LSGHTKGVSAIQWFPKKGH-LLLSGGMDGLVKLWNVYDD-------------------------RRCLRTFKGHRKPVRD 263 (503)
T ss_pred ccCCccccchhhhccceee-EEEecCCCceEEEEEEecC-------------------------cceehhhhcchhhhhh
Confidence 446999999999999 555 9999999999999999753 3567888899999999
Q ss_pred EEECCCCCEEEEEeCCCcEEEEecCCceEEeeecccCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCeEEEEeecCC
Q 009715 285 IAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDG-KYILTGGEDDLVQVWSMEDRKVVAWGEGHN 363 (528)
Q Consensus 285 l~~spdg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~g-~~l~sg~~dg~v~vwd~~~~~~~~~~~~h~ 363 (528)
++|+++|..+++++.|+.|++||+++|+++..+. ....+.|+.|+|++ +.+++|+.|+.|+.||+++++.++.+..|-
T Consensus 264 ~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hL 342 (503)
T KOG0282|consen 264 ASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHL 342 (503)
T ss_pred hhccccCCeeeeeecceeeeeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhh
Confidence 9999999999999999999999999999999886 35678999999988 788899999999999999999999999999
Q ss_pred CCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEEEeecCCC------------------------
Q 009715 364 SWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPL------------------------ 419 (528)
Q Consensus 364 ~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~------------------------ 419 (528)
+.|..+.|-+ +| .++++.++|+.++||+.+..-.+.-+.....
T Consensus 343 g~i~~i~F~~-------~g------~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i 409 (503)
T KOG0282|consen 343 GAILDITFVD-------EG------RRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYI 409 (503)
T ss_pred hheeeeEEcc-------CC------ceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceE
Confidence 9999999999 88 7999999999999999987655433221100
Q ss_pred -------------------------CCCCeecCCCCCccCCceeeeecCCCCceeeecCCCCceEEeecCCCCeEEEEEe
Q 009715 420 -------------------------GGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFT 474 (528)
Q Consensus 420 -------------------------~~~~~~s~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~~s 474 (528)
...+.||+++ ..+..|..++.+.+||..+.+.+..+..|..++..+.|+
T Consensus 410 ~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG------~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wH 483 (503)
T KOG0282|consen 410 AIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDG------RTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWH 483 (503)
T ss_pred EEEecccccccCHhhhhcceeccCceeeEEEcCCC------CeEEeecCCccEEEeechhhhhhhccccCCcceEEEEec
Confidence 0113344554 556888999999999999999999999999999999999
Q ss_pred CC---eEEEEECCCeEEEEe
Q 009715 475 QE---SVLTVCREGHIKIWM 491 (528)
Q Consensus 475 ~d---~l~t~s~Dg~i~iW~ 491 (528)
|. .++||+.||.|++|+
T Consensus 484 P~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 484 PVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred CCCcceeEecccCceeEecC
Confidence 94 499999999999996
No 53
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=1.4e-27 Score=210.74 Aligned_cols=270 Identities=18% Similarity=0.218 Sum_probs=212.9
Q ss_pred ccCCceeEEEEeeC-CCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEE-EeecCCCeEEE
Q 009715 208 VNNSRCTSVTWVPG-GDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIAR-WHICQGSINSI 285 (528)
Q Consensus 208 ~h~~~v~~l~~~p~-g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~l 285 (528)
.|.++|..++|+|. |. +|++++.|..|+||+... +.. + ..... -.+|+..|+++
T Consensus 12 gh~~r~W~~awhp~~g~-ilAscg~Dk~vriw~~~~-~~s---~-------------------~ck~vld~~hkrsVRsv 67 (312)
T KOG0645|consen 12 GHKDRVWSVAWHPGKGV-ILASCGTDKAVRIWSTSS-GDS---W-------------------TCKTVLDDGHKRSVRSV 67 (312)
T ss_pred CCCCcEEEEEeccCCce-EEEeecCCceEEEEecCC-CCc---E-------------------EEEEeccccchheeeee
Confidence 48999999999999 77 999999999999999874 111 0 01111 13688999999
Q ss_pred EECCCCCEEEEEeCCCcEEEEecCC--ceEEeeecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC---CeEEEEee
Q 009715 286 AFSTDGTYLATVGRDGYLRVFDYSK--EQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMED---RKVVAWGE 360 (528)
Q Consensus 286 ~~spdg~~l~s~~~dg~i~vwd~~~--~~~~~~~~~~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~---~~~~~~~~ 360 (528)
+|+|.|++|++++.|.++.||.-.. .+++..+.+|...|.|++|+++|.+||+++.|..|-||.+.. .+++..++
T Consensus 68 Awsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~ 147 (312)
T KOG0645|consen 68 AWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQ 147 (312)
T ss_pred eecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeec
Confidence 9999999999999999999998764 367888999999999999999999999999999999999975 36889999
Q ss_pred cCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEcc---CCeEEEEeecCC-CCCCCeecCCCCCccCCc
Q 009715 361 GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLE---MDEIVVPLRRGP-LGGSPTFSTGSQSAHWDN 436 (528)
Q Consensus 361 ~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~---~~~~~~~~~~~~-~~~~~~~s~~~~~~~~d~ 436 (528)
+|...|..+.|+| .. -+|++++.|.+|++|+-. .-.+++++..+. .+-.+.|.+.+ .
T Consensus 148 ~HtqDVK~V~WHP-------t~------dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G------~ 208 (312)
T KOG0645|consen 148 EHTQDVKHVIWHP-------TE------DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIG------S 208 (312)
T ss_pred cccccccEEEEcC-------Cc------ceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCC------c
Confidence 9999999999999 44 599999999999999866 235677776543 44556666655 3
Q ss_pred eeeeecCCCCceeeecCCCCceEEeecCCCCeEEEEEeCCeEEEEECCCeEEEEeCCCCcc---------ccCCCccce-
Q 009715 437 VCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQESVLTVCREGHIKIWMRPGVAE---------SQSSSSETV- 506 (528)
Q Consensus 437 ~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~~s~d~l~t~s~Dg~i~iW~~~~~~~---------~~~~~~~~v- 506 (528)
.+...+.+..+++|.....- -..|...++.++|..+.|++++.|+.|+++....... ....|...|
T Consensus 209 rl~s~sdD~tv~Iw~~~~~~----~~~~sr~~Y~v~W~~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVN 284 (312)
T KOG0645|consen 209 RLVSCSDDGTVSIWRLYTDL----SGMHSRALYDVPWDNGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVN 284 (312)
T ss_pred eEEEecCCcceEeeeeccCc----chhcccceEeeeecccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccc
Confidence 44566677788888654221 1247889999999955599999999999998764321 112355566
Q ss_pred -EEEccC-CceEEEeeeecc
Q 009715 507 -LSTSSK-DKPLLSSKVVTS 524 (528)
Q Consensus 507 -l~~spd-~~~l~s~~~~gs 524 (528)
+.+.|. .+.|++++.+|-
T Consensus 285 sV~w~p~~~~~L~s~~DDG~ 304 (312)
T KOG0645|consen 285 SVQWNPKVSNRLASGGDDGI 304 (312)
T ss_pred eEEEcCCCCCceeecCCCce
Confidence 888996 577888877764
No 54
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.96 E-value=7.5e-28 Score=221.65 Aligned_cols=302 Identities=17% Similarity=0.220 Sum_probs=225.9
Q ss_pred CCCCCCccccCCcccCCcccCCCCCCcceeeeCCCccEEEEeC-CCcEEEEeCCCCCCC-------CCCCCeEEEEecCC
Q 009715 107 GGNGGSKSISGSSRIGSLGASSSSTSMTNTNFDGKGTYIIFNV-GDAIFISDLNSQDKD-------AKDGHDLLIGLNSG 178 (528)
Q Consensus 107 gh~~~v~~v~~s~~~~~~~~s~s~~s~~~~~~~~~g~~~~~~~-~~~i~v~~~~~~~~~-------~~~~~~l~~g~~~G 178 (528)
-|.+-|.+|...+ ..+.+++ -||...+|+. |+.++...-...... .+....+++++.|.
T Consensus 103 ~hdDWVSsv~~~~---~~Iltgs----------YDg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dq 169 (423)
T KOG0313|consen 103 LHDDWVSSVKGAS---KWILTGS----------YDGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQ 169 (423)
T ss_pred cchhhhhhhcccC---ceEEEee----------cCCeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCc
Confidence 6777777666653 3344444 3677777765 334444444433322 34445799999999
Q ss_pred cEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccccccc-cc
Q 009715 179 DVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKD-QT 257 (528)
Q Consensus 179 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~-~~ 257 (528)
++.+|-.+... ..+. ..+...+|...|.++...++|. ++++|+.|.+|+||+...+.. ..+..... ..
T Consensus 170 tl~Lw~~~~~~-----~~~~---~~~~~~GHk~~V~sVsv~~sgt-r~~SgS~D~~lkiWs~~~~~~--~~~E~~s~~rr 238 (423)
T KOG0313|consen 170 TLRLWKWNVGE-----NKVK---ALKVCRGHKRSVDSVSVDSSGT-RFCSGSWDTMLKIWSVETDEE--DELESSSNRRR 238 (423)
T ss_pred eEEEEEecCch-----hhhh---HHhHhcccccceeEEEecCCCC-eEEeecccceeeecccCCCcc--ccccccchhhh
Confidence 99999876521 1111 1111225999999999999999 999999999999999443211 11111111 11
Q ss_pred eeEEeccCCCCCCCeEEEeecCCCeEEEEECCCCCEEEEEeCCCcEEEEecCCceEEeeecccCCCeEEEEEcCCCCEEE
Q 009715 258 QFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYIL 337 (528)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~ 337 (528)
.............|+..+.+|..+|.++.|++ ...+++++.|.+|+.||+.++..+..+.. ...++|++.+|..++|+
T Consensus 239 k~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~ 316 (423)
T KOG0313|consen 239 KKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLA 316 (423)
T ss_pred hhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceee
Confidence 11111222345778999999999999999998 66899999999999999999999888764 56799999999999999
Q ss_pred EEeCCCcEEEEECCCC---eEEEEeecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEEEe
Q 009715 338 TGGEDDLVQVWSMEDR---KVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPL 414 (528)
Q Consensus 338 sg~~dg~v~vwd~~~~---~~~~~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~ 414 (528)
+|+.|..|++||.+++ -...++.+|.++|.++.|+|. +. ++|++++.|+++++||+|+.+
T Consensus 317 ~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~------~~------~~~~S~S~D~t~klWDvRS~k----- 379 (423)
T KOG0313|consen 317 SGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPT------NE------FQLVSGSYDNTVKLWDVRSTK----- 379 (423)
T ss_pred ecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCC------Cc------eEEEEEecCCeEEEEEeccCC-----
Confidence 9999999999999885 345778899999999999992 33 799999999999999998754
Q ss_pred ecCCCCCCCeecCCCCCccCCceeeeecCCCCceeeecCCCCceEEeecCCCCeEEEEEeCC-eEEEEECCCeEEEEeC
Q 009715 415 RRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE-SVLTVCREGHIKIWMR 492 (528)
Q Consensus 415 ~~~~~~~~~~~s~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~~s~d-~l~t~s~Dg~i~iW~~ 492 (528)
.|+..+.+|.+.|.++.|... +|++||.|.+|+|+.-
T Consensus 380 -----------------------------------------~plydI~~h~DKvl~vdW~~~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 380 -----------------------------------------APLYDIAGHNDKVLSVDWNEGGLIVSGGADNKLRIFKG 417 (423)
T ss_pred -----------------------------------------CcceeeccCCceEEEEeccCCceEEeccCcceEEEecc
Confidence 144455679999999999986 7999999999999864
No 55
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=6e-28 Score=243.71 Aligned_cols=265 Identities=14% Similarity=0.219 Sum_probs=209.2
Q ss_pred ccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCcccc--------------------c----------cc--
Q 009715 208 VNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPV--------------------I----------KD-- 255 (528)
Q Consensus 208 ~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~--------------------~----------~~-- 255 (528)
.|.+.|+++.|++||+ +||+|+.||.|+||.+............ . ..
T Consensus 265 ah~gaIw~mKFS~DGK-yLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~ 343 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGK-YLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGS 343 (712)
T ss_pred ccCCcEEEEEeCCCCc-eeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccccc
Confidence 6999999999999999 9999999999999998652111000000 0 00
Q ss_pred --cceeEEeccCCCCCCCeEEEeecCCCeEEEEECCCCCEEEEEeCCCcEEEEecCCceEEeeecccCCCeEEEEEcC-C
Q 009715 256 --QTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSM-D 332 (528)
Q Consensus 256 --~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp-~ 332 (528)
...............|+..+.+|.+.|.+|.|+.+ ++|++++.|.+||+|++...++++.|. |.+.|+||+|+| |
T Consensus 344 ~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvD 421 (712)
T KOG0283|consen 344 QSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVD 421 (712)
T ss_pred CCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccC
Confidence 00000000112356788899999999999999976 489999999999999999999999986 999999999999 8
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEE
Q 009715 333 GKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVV 412 (528)
Q Consensus 333 g~~l~sg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~ 412 (528)
.+|+++|+-|+.|+||++...+.+.+...+ .-|++++|.| || ...+.|+.+|.+++|+....+.+.
T Consensus 422 DryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~P-------dG------k~avIGt~~G~C~fY~t~~lk~~~ 487 (712)
T KOG0283|consen 422 DRYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSP-------DG------KGAVIGTFNGYCRFYDTEGLKLVS 487 (712)
T ss_pred CCcEeecccccceEEeecCcCeeEeehhhh-hhheeEEecc-------CC------ceEEEEEeccEEEEEEccCCeEEE
Confidence 889999999999999999999888877744 7899999999 99 789999999999999999887766
Q ss_pred EeecC---------CCCCCCeecCCCCCccCCceeeeecCCCCceeeecCCCCceEEeecCCC--CeEEEEEeCCe--EE
Q 009715 413 PLRRG---------PLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTE--PLSGLIFTQES--VL 479 (528)
Q Consensus 413 ~~~~~---------~~~~~~~~s~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~--~V~~l~~s~d~--l~ 479 (528)
...-. ..++.+.|.++... .+.+.+.|..++++|.+..+++..++++.. .=....|+.|+ |+
T Consensus 488 ~~~I~~~~~Kk~~~~rITG~Q~~p~~~~-----~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IV 562 (712)
T KOG0283|consen 488 DFHIRLHNKKKKQGKRITGLQFFPGDPD-----EVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIV 562 (712)
T ss_pred eeeEeeccCccccCceeeeeEecCCCCC-----eEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEE
Confidence 55422 13444555444321 567888899999999998888888887544 23456788885 99
Q ss_pred EEECCCeEEEEeCCC
Q 009715 480 TVCREGHIKIWMRPG 494 (528)
Q Consensus 480 t~s~Dg~i~iW~~~~ 494 (528)
+++.|..|+||+.+.
T Consensus 563 s~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 563 SASEDSWVYIWKNDS 577 (712)
T ss_pred EeecCceEEEEeCCC
Confidence 999999999999744
No 56
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.96 E-value=6.4e-28 Score=216.42 Aligned_cols=291 Identities=17% Similarity=0.278 Sum_probs=218.7
Q ss_pred CCCCCeEEEEecCCcEEEEEcccccccc-ccce-----eeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeCCceEEEE
Q 009715 165 AKDGHDLLIGLNSGDVYSVSLRQQLQDV-GKKL-----VGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVY 238 (528)
Q Consensus 165 ~~~~~~l~~g~~~G~v~iwd~~~~~~~~-~~~~-----~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vw 238 (528)
++||.++++|+.|-.|+|+|++..+... .+.. .......+...-|..+|+++.|+|... +|++|+.|++|++|
T Consensus 121 s~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~-ILiS~srD~tvKlF 199 (430)
T KOG0640|consen 121 SPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET-ILISGSRDNTVKLF 199 (430)
T ss_pred CCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh-eEEeccCCCeEEEE
Confidence 7999999999999999999998532211 0000 000112223334999999999999999 99999999999999
Q ss_pred EcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCCCCEEEEEeCCCcEEEEecCCceEEeee-
Q 009715 239 EKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGG- 317 (528)
Q Consensus 239 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~~~dg~i~vwd~~~~~~~~~~- 317 (528)
|+.+.. ....+..+.+ ..+|.++.|+|.|.+|+.|.....+++||+++.++...-
T Consensus 200 DfsK~s-aKrA~K~~qd-----------------------~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvsan 255 (430)
T KOG0640|consen 200 DFSKTS-AKRAFKVFQD-----------------------TEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSAN 255 (430)
T ss_pred ecccHH-HHHHHHHhhc-----------------------cceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecC
Confidence 997622 1111111111 257999999999999999999999999999999886543
Q ss_pred --cccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEee-cCC-CCeEEEEEecCCCCCCCCCCccceeEEEEE
Q 009715 318 --KSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGE-GHN-SWVSGVAFDSYWSQPNSDGTAETVMYRFGS 393 (528)
Q Consensus 318 --~~~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~~~~~~~-~h~-~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s 393 (528)
..|.+.|+++.+++.+++.++++.||.|+|||--+++|+.++. .|. ..|.+..|.. +| +++++
T Consensus 256 Pd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftk-------n~------kyiLs 322 (430)
T KOG0640|consen 256 PDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTK-------NG------KYILS 322 (430)
T ss_pred cccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEcc-------CC------eEEee
Confidence 3588999999999999999999999999999999999998886 565 4799999999 99 89999
Q ss_pred EeCCCeEEEEEccCCeEEEEeecCCCCCCCeecCCCCCccCCcee-eeecCCCCceeeecCCCCceEEee-cCCCCeEEE
Q 009715 394 VGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVC-PVGTLQPAPSMRDVPKLSPLVAHR-VHTEPLSGL 471 (528)
Q Consensus 394 ~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~d~~~-~~g~~~~~~~~~d~~~~~~~~~~~-~h~~~V~~l 471 (528)
.+.|..+++|.+.+++++..+..-..-....+.......+-...+ ..-.....++-||.++...+..+. +|.+.+..+
T Consensus 323 SG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i 402 (430)
T KOG0640|consen 323 SGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWI 402 (430)
T ss_pred cCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEE
Confidence 999999999999999999888653111111111100001111111 111224467889998887665554 899999999
Q ss_pred EEeCCe--EEEEECCCeEEEEeCC
Q 009715 472 IFTQES--VLTVCREGHIKIWMRP 493 (528)
Q Consensus 472 ~~s~d~--l~t~s~Dg~i~iW~~~ 493 (528)
.-+|.. ++||+.|-.+|+|-..
T Consensus 403 ~HSP~~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 403 VHSPVEPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred EeCCCCCceeeecccceeeeeeec
Confidence 999974 9999999999999754
No 57
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=4e-27 Score=240.71 Aligned_cols=271 Identities=18% Similarity=0.213 Sum_probs=233.2
Q ss_pred CCCCeEEEEecCCcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCC
Q 009715 166 KDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGA 245 (528)
Q Consensus 166 ~~~~~l~~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~ 245 (528)
.....++++..+..|++||..... .......+|.+.|+++++...+. +|++|+.|.+++|||..+
T Consensus 216 ~~~~~~~~~s~~~tl~~~~~~~~~-----------~i~~~l~GH~g~V~~l~~~~~~~-~lvsgS~D~t~rvWd~~s--- 280 (537)
T KOG0274|consen 216 LHDGFFKSGSDDSTLHLWDLNNGY-----------LILTRLVGHFGGVWGLAFPSGGD-KLVSGSTDKTERVWDCST--- 280 (537)
T ss_pred eecCeEEecCCCceeEEeecccce-----------EEEeeccCCCCCceeEEEecCCC-EEEEEecCCcEEeEecCC---
Confidence 347789999999999999987611 11122445999999999987555 999999999999999876
Q ss_pred CCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCCCCEEEEEeCCCcEEEEecCCceEEeeecccCCCeE
Q 009715 246 GDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALL 325 (528)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~ 325 (528)
...+..+.+|+..|.++... ..++++|+.|.+|++|++.++.++..+.+|.++|+
T Consensus 281 -----------------------g~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~ 335 (537)
T KOG0274|consen 281 -----------------------GECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVN 335 (537)
T ss_pred -----------------------CcEEEEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEeccccccEE
Confidence 35678888999999999885 44788899999999999999999999999999999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEc
Q 009715 326 CCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDL 405 (528)
Q Consensus 326 ~l~~sp~g~~l~sg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~ 405 (528)
++..+ +.++++|+.|+.|+|||..+++++..+.+|..+|.++.+.+ . .++++|+.|+.|++||+
T Consensus 336 ~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~-------~-------~~~~Sgs~D~~IkvWdl 399 (537)
T KOG0274|consen 336 CVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDS-------E-------NRLLSGSLDTTIKVWDL 399 (537)
T ss_pred EEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecC-------c-------ceEEeeeeccceEeecC
Confidence 99997 78999999999999999999999999999999999999865 2 38999999999999999
Q ss_pred cCC-eEEEEeecCCCCCCCeecCCCCCccCCceeeeecCCCCceeeecCCCCceEEeec-CCCCeEEEEEeCCeEEEEEC
Q 009715 406 EMD-EIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRV-HTEPLSGLIFTQESVLTVCR 483 (528)
Q Consensus 406 ~~~-~~~~~~~~~~~~~~~~~s~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~-h~~~V~~l~~s~d~l~t~s~ 483 (528)
++. +++..+..+.... .....++..+..+..++.+++||....+.+..+.+ |...|..+++..+.+++++.
T Consensus 400 ~~~~~c~~tl~~h~~~v-------~~l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~~~~il~s~~ 472 (537)
T KOG0274|consen 400 RTKRKCIHTLQGHTSLV-------SSLLLRDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALGKEEILCSSD 472 (537)
T ss_pred CchhhhhhhhcCCcccc-------cccccccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecCcceEEEEec
Confidence 999 8888887643322 22455667778888999999999999999999998 78999999998667999999
Q ss_pred CCeEEEEeCCCCcccc
Q 009715 484 EGHIKIWMRPGVAESQ 499 (528)
Q Consensus 484 Dg~i~iW~~~~~~~~~ 499 (528)
||.+++||++.+....
T Consensus 473 ~~~~~l~dl~~~~~~~ 488 (537)
T KOG0274|consen 473 DGSVKLWDLRSGTLIR 488 (537)
T ss_pred CCeeEEEecccCchhh
Confidence 9999999999877443
No 58
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=8.7e-28 Score=223.15 Aligned_cols=278 Identities=16% Similarity=0.174 Sum_probs=222.7
Q ss_pred CCCCCeEEEEecCCcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCC
Q 009715 165 AKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDG 244 (528)
Q Consensus 165 ~~~~~~l~~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~ 244 (528)
+++|++|++++.|-+..+|++..... ....+....|..+|.-+.|+||.+ +|++++.|..+.+||+.++
T Consensus 233 S~nGkyLAsaSkD~Taiiw~v~~d~~---------~kl~~tlvgh~~~V~yi~wSPDdr-yLlaCg~~e~~~lwDv~tg- 301 (519)
T KOG0293|consen 233 SHNGKYLASASKDSTAIIWIVVYDVH---------FKLKKTLVGHSQPVSYIMWSPDDR-YLLACGFDEVLSLWDVDTG- 301 (519)
T ss_pred cCCCeeEeeccCCceEEEEEEecCcc---------eeeeeeeecccCceEEEEECCCCC-eEEecCchHheeeccCCcc-
Confidence 68999999999999999998765211 112223335999999999999999 8999999999999999873
Q ss_pred CCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCCCCEEEEEeCCCcEEEEecCCceEEeeecccC-CC
Q 009715 245 AGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYY-GA 323 (528)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~-~~ 323 (528)
.....++ ++|...+.+++|.|||..+++|+.|+.+..||++ |..+...++-. ..
T Consensus 302 d~~~~y~------------------------~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~ 356 (519)
T KOG0293|consen 302 DLRHLYP------------------------SGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD-GNILGNWEGVRDPK 356 (519)
T ss_pred hhhhhcc------------------------cCcCCCcceeEEccCCceeEecCCCCcEEEecCC-cchhhcccccccce
Confidence 2222222 1234788999999999999999999999999998 55554444322 46
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEE
Q 009715 324 LLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLW 403 (528)
Q Consensus 324 v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lw 403 (528)
|.+++..+||+++++.+.|..|++|+.++......+. -..+|++++.+. || ++++.--.+..|++|
T Consensus 357 v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lis-e~~~its~~iS~-------d~------k~~LvnL~~qei~LW 422 (519)
T KOG0293|consen 357 VHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLIS-EEQPITSFSISK-------DG------KLALVNLQDQEIHLW 422 (519)
T ss_pred eEEEEEcCCCcEEEEEecccceeeechhhhhhhcccc-ccCceeEEEEcC-------CC------cEEEEEcccCeeEEe
Confidence 8999999999999999999999999998876654444 456799999998 99 788888899999999
Q ss_pred EccCCeEEEEeecCCCCCCCeecCCCCCccCCceeeeecCCCCceeeecCCCCceEEeecCCCCeEEEEEeCC---eEEE
Q 009715 404 DLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE---SVLT 480 (528)
Q Consensus 404 d~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~~s~d---~l~t 480 (528)
|+...+.+..+.+.....-+.-++- ....+..++.|+.|..+++|+...++++..+.||...|++|+|+|. .+++
T Consensus 423 Dl~e~~lv~kY~Ghkq~~fiIrSCF--gg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~AS 500 (519)
T KOG0293|consen 423 DLEENKLVRKYFGHKQGHFIIRSCF--GGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFAS 500 (519)
T ss_pred ecchhhHHHHhhcccccceEEEecc--CCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhc
Confidence 9998777776665433332222222 2344577899999999999999999999999999999999999994 5999
Q ss_pred EECCCeEEEEeCCC
Q 009715 481 VCREGHIKIWMRPG 494 (528)
Q Consensus 481 ~s~Dg~i~iW~~~~ 494 (528)
||.||+||||....
T Consensus 501 asDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 501 ASDDGTIRIWGPSD 514 (519)
T ss_pred cCCCCeEEEecCCc
Confidence 99999999998754
No 59
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=4.3e-28 Score=243.97 Aligned_cols=259 Identities=15% Similarity=0.243 Sum_probs=209.6
Q ss_pred cCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEEC
Q 009715 209 NNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFS 288 (528)
Q Consensus 209 h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 288 (528)
...+|..++|+|..+ +++++-..|.|++||.+. ...+..+..|.++|+.++|+
T Consensus 8 kSsRvKglsFHP~rP-wILtslHsG~IQlWDYRM--------------------------~tli~rFdeHdGpVRgv~FH 60 (1202)
T KOG0292|consen 8 KSSRVKGLSFHPKRP-WILTSLHSGVIQLWDYRM--------------------------GTLIDRFDEHDGPVRGVDFH 60 (1202)
T ss_pred ccccccceecCCCCC-EEEEeecCceeeeehhhh--------------------------hhHHhhhhccCCccceeeec
Confidence 567899999999999 999999999999999986 23566778899999999999
Q ss_pred CCCCEEEEEeCCCcEEEEecCCceEEeeecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCeEE
Q 009715 289 TDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSG 368 (528)
Q Consensus 289 pdg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~ 368 (528)
|+..++++|++|-.|+||++++.+++.++.+|-+.|..+.|++.-.+|+++++|.+|+||+..+++++..+.||...|.|
T Consensus 61 ~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMc 140 (1202)
T KOG0292|consen 61 PTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMC 140 (1202)
T ss_pred CCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEEEeecCCCCCCCeecCCCCCccCCceeeeecCCCCce
Q 009715 369 VAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPS 448 (528)
Q Consensus 369 v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~d~~~~~g~~~~~~~ 448 (528)
.+|+| .. .+++|+|.|.+||+||+..-+....-.. .....+.-.... .| ..|..|
T Consensus 141 AqFhp-------tE------DlIVSaSLDQTVRVWDisGLRkk~~~pg-~~e~~~~~~~~~----~d---Lfg~~D---- 195 (1202)
T KOG0292|consen 141 AQFHP-------TE------DLIVSASLDQTVRVWDISGLRKKNKAPG-SLEDQMRGQQGN----SD---LFGQTD---- 195 (1202)
T ss_pred eccCC-------cc------ceEEEecccceEEEEeecchhccCCCCC-Cchhhhhccccc----hh---hcCCcC----
Confidence 99999 55 5899999999999999864322111000 000000000000 00 001001
Q ss_pred eeecCCCCceEEeecCCCCeEEEEEeCC--eEEEEECCCeEEEEeCCCCc----cccCCCccce--EEEccCCceEEEee
Q 009715 449 MRDVPKLSPLVAHRVHTEPLSGLIFTQE--SVLTVCREGHIKIWMRPGVA----ESQSSSSETV--LSTSSKDKPLLSSK 520 (528)
Q Consensus 449 ~~d~~~~~~~~~~~~h~~~V~~l~~s~d--~l~t~s~Dg~i~iW~~~~~~----~~~~~~~~~v--l~~spd~~~l~s~~ 520 (528)
.-....+.||+..|+-++|+|. .|++|+.|+.|++|.+...+ ....+|...| +-|.|..+.|+|.+
T Consensus 196 ------aVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSns 269 (1202)
T KOG0292|consen 196 ------AVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNS 269 (1202)
T ss_pred ------eeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecC
Confidence 0122456799999999999996 59999999999999987655 3445788888 77899999999998
Q ss_pred eeccc
Q 009715 521 VVTSS 525 (528)
Q Consensus 521 ~~gs~ 525 (528)
.+.++
T Consensus 270 EDksi 274 (1202)
T KOG0292|consen 270 EDKSI 274 (1202)
T ss_pred CCccE
Confidence 88654
No 60
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.96 E-value=3.7e-27 Score=217.13 Aligned_cols=266 Identities=17% Similarity=0.234 Sum_probs=222.6
Q ss_pred cCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEEC
Q 009715 209 NNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFS 288 (528)
Q Consensus 209 h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 288 (528)
|.+.|.++... ++ .+++|+.||.+++||.. .+....+.+|.++|.+++|.
T Consensus 104 hdDWVSsv~~~--~~-~IltgsYDg~~riWd~~---------------------------Gk~~~~~~Ght~~ik~v~~v 153 (423)
T KOG0313|consen 104 HDDWVSSVKGA--SK-WILTGSYDGTSRIWDLK---------------------------GKSIKTIVGHTGPIKSVAWV 153 (423)
T ss_pred chhhhhhhccc--Cc-eEEEeecCCeeEEEecC---------------------------CceEEEEecCCcceeeeEEE
Confidence 88999999887 44 89999999999999986 35677888999999988886
Q ss_pred C-C--CCEEEEEeCCCcEEEEecCCceEE----eeecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC----------
Q 009715 289 T-D--GTYLATVGRDGYLRVFDYSKEQLI----CGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSME---------- 351 (528)
Q Consensus 289 p-d--g~~l~s~~~dg~i~vwd~~~~~~~----~~~~~~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~---------- 351 (528)
. + ...|++++.|.++++|-.+.++.. ..-.+|...|.+++..++|..+++|+.|..|+||+..
T Consensus 154 ~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~ 233 (423)
T KOG0313|consen 154 IKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESS 233 (423)
T ss_pred ecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCcccccccc
Confidence 4 2 336999999999999999876543 3345899999999999999999999999999999931
Q ss_pred ---------------CCeEEEEeecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEEEeec
Q 009715 352 ---------------DRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRR 416 (528)
Q Consensus 352 ---------------~~~~~~~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~ 416 (528)
++.++.++.||..+|.+|.|++ .+ .+.+++.|.+|+.||+.++.++..+..
T Consensus 234 s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-------~~-------v~yS~SwDHTIk~WDletg~~~~~~~~ 299 (423)
T KOG0313|consen 234 SNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-------AT-------VIYSVSWDHTIKVWDLETGGLKSTLTT 299 (423)
T ss_pred chhhhhhhhhhhcccccCceEEecccccceeeEEEcC-------CC-------ceEeecccceEEEEEeecccceeeeec
Confidence 1246778899999999999987 54 799999999999999999999988887
Q ss_pred CCCCCCCeecCCCCCccCCceeeeecCCCCceeeecCCCC---ceEEeecCCCCeEEEEEeCC---eEEEEECCCeEEEE
Q 009715 417 GPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLS---PLVAHRVHTEPLSGLIFTQE---SVLTVCREGHIKIW 490 (528)
Q Consensus 417 ~~~~~~~~~s~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~---~~~~~~~h~~~V~~l~~s~d---~l~t~s~Dg~i~iW 490 (528)
.....++..++.. ..+..|+.+..+++||-++.. +.+.+.+|.+-|.++.|+|. .|++++.|+++++|
T Consensus 300 ~ksl~~i~~~~~~------~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klW 373 (423)
T KOG0313|consen 300 NKSLNCISYSPLS------KLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLW 373 (423)
T ss_pred CcceeEeeccccc------ceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEE
Confidence 6666666665544 567889999999999998764 56788899999999999995 39999999999999
Q ss_pred eCCCCcc---ccCCCccceEEEc-cCCceEEEeeeecc
Q 009715 491 MRPGVAE---SQSSSSETVLSTS-SKDKPLLSSKVVTS 524 (528)
Q Consensus 491 ~~~~~~~---~~~~~~~~vl~~s-pd~~~l~s~~~~gs 524 (528)
|+.+.+. ....|.+.|+++. -++..|++|+.+..
T Consensus 374 DvRS~k~plydI~~h~DKvl~vdW~~~~~IvSGGaD~~ 411 (423)
T KOG0313|consen 374 DVRSTKAPLYDIAGHNDKVLSVDWNEGGLIVSGGADNK 411 (423)
T ss_pred EeccCCCcceeeccCCceEEEEeccCCceEEeccCcce
Confidence 9987763 3347889998885 45668999988743
No 61
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.9e-27 Score=225.85 Aligned_cols=271 Identities=16% Similarity=0.220 Sum_probs=220.1
Q ss_pred cCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEEC
Q 009715 209 NNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFS 288 (528)
Q Consensus 209 h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 288 (528)
..+.|..++|+|..++-+|+.+. -.|.||+...... .+.+.-....|++++|-
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~--------------------------~k~~srFk~~v~s~~fR 77 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSV--------------------------RKTFSRFKDVVYSVDFR 77 (487)
T ss_pred ccCcceeEecCCCCCCceEEecc-cEEEEEecchhhh--------------------------hhhHHhhccceeEEEee
Confidence 44689999999988866666654 4799999765221 11111123789999999
Q ss_pred CCCCEEEEEeCCCcEEEEecCCceEEeeecccCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCeEEEEeecCCCCeE
Q 009715 289 TDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDG-KYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVS 367 (528)
Q Consensus 289 pdg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~g-~~l~sg~~dg~v~vwd~~~~~~~~~~~~h~~~V~ 367 (528)
.||++|+.|...|.|+|||+.+...+..+.+|..++..+.|+|+. ..+++|++|+.+++||+.+......+.+|++.|.
T Consensus 78 ~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR 157 (487)
T KOG0310|consen 78 SDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVR 157 (487)
T ss_pred cCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeE
Confidence 999999999999999999988777788899999999999999955 5677899999999999999987778999999999
Q ss_pred EEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCC-eEEEEeecCCCCCCCeecCCCCCccCCceeeeecCCCC
Q 009715 368 GVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMD-EIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPA 446 (528)
Q Consensus 368 ~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~-~~~~~~~~~~~~~~~~~s~~~~~~~~d~~~~~g~~~~~ 446 (528)
+.+|+|- ++ .+++||+.||.|++||++.. ..+.++.++.++..+.+-+.+. .+ +..-.+.
T Consensus 158 ~g~~~~~------~~------hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs------~i-asAgGn~ 218 (487)
T KOG0310|consen 158 CGDISPA------ND------HIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGS------LI-ASAGGNS 218 (487)
T ss_pred eeccccC------CC------eEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCC------EE-EEcCCCe
Confidence 9999982 33 68999999999999999988 8889999999999999888763 11 2223457
Q ss_pred ceeeecCCCCce-EEeecCCCCeEEEEEeCC--eEEEEECCCeEEEEeCCCCcc-ccCCCccce--EEEccCCceEEEee
Q 009715 447 PSMRDVPKLSPL-VAHRVHTEPLSGLIFTQE--SVLTVCREGHIKIWMRPGVAE-SQSSSSETV--LSTSSKDKPLLSSK 520 (528)
Q Consensus 447 ~~~~d~~~~~~~-~~~~~h~~~V~~l~~s~d--~l~t~s~Dg~i~iW~~~~~~~-~~~~~~~~v--l~~spd~~~l~s~~ 520 (528)
+++||+.++..+ ..+..|...|+|+.+..+ .|++++.|+.|++||+..-+. ......++| ++++||++.++.|.
T Consensus 219 vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~t~viGm 298 (487)
T KOG0310|consen 219 VKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQTVVIGM 298 (487)
T ss_pred EEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeecccceeeEEecCCCceEEEec
Confidence 899999865544 444459999999999986 499999999999999766553 344677788 77799999999998
Q ss_pred eeccc
Q 009715 521 VVTSS 525 (528)
Q Consensus 521 ~~gs~ 525 (528)
.+|-.
T Consensus 299 snGlv 303 (487)
T KOG0310|consen 299 SNGLV 303 (487)
T ss_pred cccee
Confidence 88654
No 62
>PTZ00420 coronin; Provisional
Probab=99.96 E-value=5.9e-26 Score=232.93 Aligned_cols=251 Identities=14% Similarity=0.152 Sum_probs=180.6
Q ss_pred EecCCcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccccc
Q 009715 174 GLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVI 253 (528)
Q Consensus 174 g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~ 253 (528)
|+..|.|.+|++... ... . ....|...|.+++|+|+..++|++|+.||+|+|||+...+.....
T Consensus 50 GG~~gvI~L~~~~r~------~~v--~----~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~---- 113 (568)
T PTZ00420 50 GGLIGAIRLENQMRK------PPV--I----KLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKE---- 113 (568)
T ss_pred CCceeEEEeeecCCC------ceE--E----EEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccc----
Confidence 445678999987541 011 1 122499999999999974339999999999999999753211000
Q ss_pred cccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCCCCE-EEEEeCCCcEEEEecCCceEEeeecccCCCeEEEEEcCC
Q 009715 254 KDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTY-LATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMD 332 (528)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spdg~~-l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~ 332 (528)
...++..+.+|...|.+++|+|++.. |++++.|+.|++||+++++.+..+. |...|.+++|+|+
T Consensus 114 --------------i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~Slswspd 178 (568)
T PTZ00420 114 --------------IKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIK 178 (568)
T ss_pred --------------cccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCC
Confidence 01355667889999999999998875 5788999999999999998877765 5678999999999
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCeEEEE-----EecCCCCCCCCCCccceeEEEEEEeCCC----eEEEE
Q 009715 333 GKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVA-----FDSYWSQPNSDGTAETVMYRFGSVGQDT----RLLLW 403 (528)
Q Consensus 333 g~~l~sg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~v~-----f~p~~~~~~~dg~~~~~~~~l~s~s~D~----~i~lw 403 (528)
|.+|++++.|+.|+|||+++++.+..+.+|.+.+.... |++ ++ .+|++++.|+ +|+||
T Consensus 179 G~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~-------d~------~~IlTtG~d~~~~R~VkLW 245 (568)
T PTZ00420 179 GNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGG-------DD------NYILSTGFSKNNMREMKLW 245 (568)
T ss_pred CCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcC-------CC------CEEEEEEcCCCCccEEEEE
Confidence 99999999999999999999999999999988765433 345 66 5788887764 79999
Q ss_pred EccC-CeEEEEeecCCCCCCCeecCCCCCccCCceeeeecCCCCceeeecCCCCceEEeecCCCCeEEEEEeCC--eEEE
Q 009715 404 DLEM-DEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE--SVLT 480 (528)
Q Consensus 404 d~~~-~~~~~~~~~~~~~~~~~~s~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~~s~d--~l~t 480 (528)
|++. .+++..+.. ..+.+.+......++ .+++
T Consensus 246 Dlr~~~~pl~~~~l---------------------------------------------d~~~~~L~p~~D~~tg~l~ls 280 (568)
T PTZ00420 246 DLKNTTSALVTMSI---------------------------------------------DNASAPLIPHYDESTGLIYLI 280 (568)
T ss_pred ECCCCCCceEEEEe---------------------------------------------cCCccceEEeeeCCCCCEEEE
Confidence 9985 343332211 112233323323333 3788
Q ss_pred EECCCeEEEEeCCCCcccc---CCCccce--EEEccCC
Q 009715 481 VCREGHIKIWMRPGVAESQ---SSSSETV--LSTSSKD 513 (528)
Q Consensus 481 ~s~Dg~i~iW~~~~~~~~~---~~~~~~v--l~~spd~ 513 (528)
|+.|++|++|++..+.... ..+...+ ++|.|+.
T Consensus 281 GkGD~tIr~~e~~~~~~~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 281 GKGDGNCRYYQHSLGSIRKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred EECCCeEEEEEccCCcEEeecccccCCCccceEEcccc
Confidence 9999999999997654221 1222333 7777754
No 63
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.96 E-value=5.4e-28 Score=210.83 Aligned_cols=285 Identities=19% Similarity=0.232 Sum_probs=237.8
Q ss_pred CCcEEEEeCCCCCCCCCCCCeEEEEecCCcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEE
Q 009715 150 GDAIFISDLNSQDKDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVG 229 (528)
Q Consensus 150 ~~~i~v~~~~~~~~~~~~~~~l~~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg 229 (528)
+....+.|+...+. .|+|-+|+.++.||.-.+-+=++ ..+...+.+|++.|+....+.+.. +.+++
T Consensus 12 ghtrpvvdl~~s~i-tp~g~flisa~kd~~pmlr~g~t------------gdwigtfeghkgavw~~~l~~na~-~aasa 77 (334)
T KOG0278|consen 12 GHTRPVVDLAFSPI-TPDGYFLISASKDGKPMLRNGDT------------GDWIGTFEGHKGAVWSATLNKNAT-RAASA 77 (334)
T ss_pred CCCcceeEEeccCC-CCCceEEEEeccCCCchhccCCC------------CCcEEeeeccCcceeeeecCchhh-hhhhh
Confidence 44444455544333 48999999999999876554433 334445557999999999999888 89999
Q ss_pred eCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCCCCEEEEEeCCCcEEEEecC
Q 009715 230 HADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYS 309 (528)
Q Consensus 230 ~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~~~dg~i~vwd~~ 309 (528)
..|=+-+|||.-+ +.....|. |..-|..++|+.|.++|++|+.+..+||||++
T Consensus 78 aadftakvw~a~t-gdelhsf~--------------------------hkhivk~~af~~ds~~lltgg~ekllrvfdln 130 (334)
T KOG0278|consen 78 AADFTAKVWDAVT-GDELHSFE--------------------------HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLN 130 (334)
T ss_pred cccchhhhhhhhh-hhhhhhhh--------------------------hhheeeeEEecccchhhhccchHHHhhhhhcc
Confidence 9999999999876 32222222 45678999999999999999999999999998
Q ss_pred Cce-EEeeecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCeEEEEEecCCCCCCCCCCcccee
Q 009715 310 KEQ-LICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVM 388 (528)
Q Consensus 310 ~~~-~~~~~~~~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~ 388 (528)
..+ +...+.+|.+.|..+.|....+.|++...|+.|++||.+++..+++++ ...+|+++..++ ||
T Consensus 131 ~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~-------dG------ 196 (334)
T KOG0278|consen 131 RPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQ-------DG------ 196 (334)
T ss_pred CCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEe-cCCCCcceeecc-------CC------
Confidence 654 456678899999999999988889998999999999999999999998 788899999999 99
Q ss_pred EEEEEEeCCCeEEEEEccCCeEEEEeecCCCCCCCeecCCCCCccCCceeeeecCCCCceeeecCCCCceEEe-ecCCCC
Q 009715 389 YRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAH-RVHTEP 467 (528)
Q Consensus 389 ~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~-~~h~~~ 467 (528)
.+++....+.|++||..+-..++.+.....+.+..+.|.. ..+..|..+..++.||..+.+.+..+ .+|.++
T Consensus 197 -~ilTia~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k------~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gp 269 (334)
T KOG0278|consen 197 -RILTIAYGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKK------EFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGP 269 (334)
T ss_pred -CEEEEecCceeEEeccccccceeeccCccccccccccCCC------ceEEecCcceEEEEEeccCCceeeecccCCCCc
Confidence 6778888899999999999999998887777777777765 55678888999999999999999886 899999
Q ss_pred eEEEEEeCCe--EEEEECCCeEEEEeCCCCc
Q 009715 468 LSGLIFTQES--VLTVCREGHIKIWMRPGVA 496 (528)
Q Consensus 468 V~~l~~s~d~--l~t~s~Dg~i~iW~~~~~~ 496 (528)
|.+|.|+||+ .++||.||+|+||....++
T Consensus 270 VhcVrFSPdGE~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 270 VHCVRFSPDGELYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred eEEEEECCCCceeeccCCCceEEEEEecCCC
Confidence 9999999997 7899999999999976554
No 64
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.96 E-value=2.1e-27 Score=224.02 Aligned_cols=263 Identities=19% Similarity=0.308 Sum_probs=204.8
Q ss_pred CCCCeEEEEecCCcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCC
Q 009715 166 KDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGA 245 (528)
Q Consensus 166 ~~~~~l~~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~ 245 (528)
.+...+++++..+.|+|||..+....+.. .......-...+|+..-..+.|++.....|++++.|+.|.+||+...+.
T Consensus 135 Qnp~iVAt~t~~~dv~Vfd~tk~~s~~~~--~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~ 212 (422)
T KOG0264|consen 135 QNPNIVATKTSSGDVYVFDYTKHPSKPKA--SGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESK 212 (422)
T ss_pred CCCcEEEecCCCCCEEEEEeccCCCcccc--cccCCCceEEEeecccccccccccccceeEeeccCCCcEEEEecccccc
Confidence 45667788889999999998763211110 0001111112347777888999999988999999999999999986432
Q ss_pred CCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECC-CCCEEEEEeCCCcEEEEecC--CceEEeeecccCC
Q 009715 246 GDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST-DGTYLATVGRDGYLRVFDYS--KEQLICGGKSYYG 322 (528)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp-dg~~l~s~~~dg~i~vwd~~--~~~~~~~~~~~~~ 322 (528)
.. ....+...+++|+..|..++|++ +..+|++++.|+.+.|||++ +.++....++|.+
T Consensus 213 ~~-------------------~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~ 273 (422)
T KOG0264|consen 213 ED-------------------KVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSA 273 (422)
T ss_pred CC-------------------ccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCC
Confidence 11 12457788999999999999999 77889999999999999999 5566677788999
Q ss_pred CeEEEEEcC-CCCEEEEEeCCCcEEEEECCC-CeEEEEeecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeE
Q 009715 323 ALLCCAWSM-DGKYILTGGEDDLVQVWSMED-RKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRL 400 (528)
Q Consensus 323 ~v~~l~~sp-~g~~l~sg~~dg~v~vwd~~~-~~~~~~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i 400 (528)
.|+|++|+| ++..||+|+.|++|++||+|. .+++.++.+|...|.+|.|+|+ .. ..|++.+.|+.+
T Consensus 274 ~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh------~e------tvLASSg~D~rl 341 (422)
T KOG0264|consen 274 EVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPH------NE------TVLASSGTDRRL 341 (422)
T ss_pred ceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCC------CC------ceeEecccCCcE
Confidence 999999999 556888999999999999998 4688999999999999999993 22 589999999999
Q ss_pred EEEEccCCeEEEEeecCCCCCCCeecCCCCCccCCceeeeecCCCCceeeecCCCCceEEeecCCCCeEEEEEeCCe---
Q 009715 401 LLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--- 477 (528)
Q Consensus 401 ~lwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~~s~d~--- 477 (528)
.+||+..-...+.-. ...+ ...+++..+.||...|..+.|+|..
T Consensus 342 ~vWDls~ig~eq~~e---------da~d------------------------gppEllF~HgGH~~kV~DfsWnp~ePW~ 388 (422)
T KOG0264|consen 342 NVWDLSRIGEEQSPE---------DAED------------------------GPPELLFIHGGHTAKVSDFSWNPNEPWT 388 (422)
T ss_pred EEEeccccccccChh---------hhcc------------------------CCcceeEEecCcccccccccCCCCCCeE
Confidence 999986532221100 0000 1124567788999999999999973
Q ss_pred EEEEECCCeEEEEeCCC
Q 009715 478 VLTVCREGHIKIWMRPG 494 (528)
Q Consensus 478 l~t~s~Dg~i~iW~~~~ 494 (528)
|++++.|+.+.||++..
T Consensus 389 I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 389 IASVAEDNILQIWQMAE 405 (422)
T ss_pred EEEecCCceEEEeeccc
Confidence 99999999999999763
No 65
>PTZ00421 coronin; Provisional
Probab=99.96 E-value=5.7e-26 Score=232.03 Aligned_cols=211 Identities=17% Similarity=0.267 Sum_probs=168.9
Q ss_pred ccCCceeEEEEee-CCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEE
Q 009715 208 VNNSRCTSVTWVP-GGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIA 286 (528)
Q Consensus 208 ~h~~~v~~l~~~p-~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 286 (528)
.|.+.|++++|+| ++. +|++|+.|++|++||+...+... ....++..+.+|...|.+++
T Consensus 73 GH~~~V~~v~fsP~d~~-~LaSgS~DgtIkIWdi~~~~~~~-------------------~~~~~l~~L~gH~~~V~~l~ 132 (493)
T PTZ00421 73 GQEGPIIDVAFNPFDPQ-KLFTASEDGTIMGWGIPEEGLTQ-------------------NISDPIVHLQGHTKKVGIVS 132 (493)
T ss_pred CCCCCEEEEEEcCCCCC-EEEEEeCCCEEEEEecCCCcccc-------------------ccCcceEEecCCCCcEEEEE
Confidence 4999999999999 666 99999999999999997532110 01246778889999999999
Q ss_pred ECCCC-CEEEEEeCCCcEEEEecCCceEEeeecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCC
Q 009715 287 FSTDG-TYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSW 365 (528)
Q Consensus 287 ~spdg-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~~~~~~~~h~~~ 365 (528)
|+|++ ++|++++.|+.|+|||+++++.+..+..|...|.+++|+|++.+|++++.|+.|+|||+++++.+..+.+|...
T Consensus 133 f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~ 212 (493)
T PTZ00421 133 FHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASA 212 (493)
T ss_pred eCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCC
Confidence 99975 79999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred -eEEEEEecCCCCCCCCCCccceeEEEEEEe----CCCeEEEEEccCCeEEEEeecCCCCCCCeecCCCCCccCCceeee
Q 009715 366 -VSGVAFDSYWSQPNSDGTAETVMYRFGSVG----QDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPV 440 (528)
Q Consensus 366 -V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s----~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~d~~~~~ 440 (528)
+..+.|.+ ++ ..+++++ .|+.|++||+++.......
T Consensus 213 ~~~~~~w~~-------~~------~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~-------------------------- 253 (493)
T PTZ00421 213 KSQRCLWAK-------RK------DLIITLGCSKSQQRQIMLWDTRKMASPYST-------------------------- 253 (493)
T ss_pred cceEEEEcC-------CC------CeEEEEecCCCCCCeEEEEeCCCCCCceeE--------------------------
Confidence 45678887 65 3555544 5899999999864321111
Q ss_pred ecCCCCceeeecCCCCceEEeec-CCCCeEEEEEeCCe--EEEEE-CCCeEEEEeCCCCcc
Q 009715 441 GTLQPAPSMRDVPKLSPLVAHRV-HTEPLSGLIFTQES--VLTVC-REGHIKIWMRPGVAE 497 (528)
Q Consensus 441 g~~~~~~~~~d~~~~~~~~~~~~-h~~~V~~l~~s~d~--l~t~s-~Dg~i~iW~~~~~~~ 497 (528)
... +...+....|++++ |++++ .|+.|++||+..+..
T Consensus 254 --------------------~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~ 294 (493)
T PTZ00421 254 --------------------VDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERL 294 (493)
T ss_pred --------------------eccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCce
Confidence 111 22345556788874 77776 599999999987653
No 66
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=9.5e-27 Score=201.47 Aligned_cols=254 Identities=15% Similarity=0.174 Sum_probs=209.9
Q ss_pred ceeeccCCCCCCCccccCCcccCCcccCCCCCCcceeeeCCCccEEEEeCCCcEEEEeCCCCCCC------CCCCCeEEE
Q 009715 100 SRTLGFGGGNGGSKSISGSSRIGSLGASSSSTSMTNTNFDGKGTYIIFNVGDAIFISDLNSQDKD------AKDGHDLLI 173 (528)
Q Consensus 100 ~~~~sf~gh~~~v~~v~~s~~~~~~~~s~s~~s~~~~~~~~~g~~~~~~~~~~i~v~~~~~~~~~------~~~~~~l~~ 173 (528)
+++..+.+|.|+|+.+.|+- +|.+..+++. +-.+..||.-+...+..+.....+ +.|...++.
T Consensus 8 kr~~~l~~~qgaV~avryN~-dGnY~ltcGs----------drtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s 76 (307)
T KOG0316|consen 8 KRLSILDCAQGAVRAVRYNV-DGNYCLTCGS----------DRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFAS 76 (307)
T ss_pred hhceeecccccceEEEEEcc-CCCEEEEcCC----------CceEEeecccccceeeeecCCCceeeecccccccccccc
Confidence 45567789999999999987 7777666664 788899998888777666655433 788999999
Q ss_pred EecCCcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccccc
Q 009715 174 GLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVI 253 (528)
Q Consensus 174 g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~ 253 (528)
|+.|..|++||+.+ ....+.+..|...|+.++|+.+.. .+++|+.|..+++||.+..
T Consensus 77 ~GgDk~v~vwDV~T------------Gkv~Rr~rgH~aqVNtV~fNeesS-Vv~SgsfD~s~r~wDCRS~---------- 133 (307)
T KOG0316|consen 77 CGGDKAVQVWDVNT------------GKVDRRFRGHLAQVNTVRFNEESS-VVASGSFDSSVRLWDCRSR---------- 133 (307)
T ss_pred CCCCceEEEEEccc------------CeeeeecccccceeeEEEecCcce-EEEeccccceeEEEEcccC----------
Confidence 99999999999998 333344456999999999999998 9999999999999998863
Q ss_pred cccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCCCCEEEEEeCCCcEEEEecCCceEEeeecccCCCeEEEEEcCCC
Q 009715 254 KDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDG 333 (528)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~g 333 (528)
..+|++++......|.++... +..|+.|+.||++|.||++.|++...+. ..+|+|++|++|+
T Consensus 134 --------------s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~sDy~--g~pit~vs~s~d~ 195 (307)
T KOG0316|consen 134 --------------SFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLSSDYF--GHPITSVSFSKDG 195 (307)
T ss_pred --------------CCCccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEeecceeehhhc--CCcceeEEecCCC
Confidence 246777777777899999885 5589999999999999999998876554 4689999999999
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEeecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEEE
Q 009715 334 KYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVP 413 (528)
Q Consensus 334 ~~l~sg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~ 413 (528)
+..+.++.|+.+++.|-.+|+.+..+++|.+.-..+..+-. . .. ..+++|++||.|.+||+.....+..
T Consensus 196 nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~----q-sd------thV~sgSEDG~Vy~wdLvd~~~~sk 264 (307)
T KOG0316|consen 196 NCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLN----Q-SD------THVFSGSEDGKVYFWDLVDETQISK 264 (307)
T ss_pred CEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeec----c-cc------eeEEeccCCceEEEEEeccceeeee
Confidence 99999999999999999999999999999986665544320 0 22 5899999999999999998887765
Q ss_pred eec
Q 009715 414 LRR 416 (528)
Q Consensus 414 ~~~ 416 (528)
+..
T Consensus 265 ~~~ 267 (307)
T KOG0316|consen 265 LSV 267 (307)
T ss_pred ecc
Confidence 543
No 67
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.4e-27 Score=220.22 Aligned_cols=274 Identities=18% Similarity=0.166 Sum_probs=227.4
Q ss_pred ccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEE
Q 009715 208 VNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAF 287 (528)
Q Consensus 208 ~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 287 (528)
.|...|+-+.|+++|+ +||+++.|.+.-+|++..+.. ....+++.+|..+|.-+.|
T Consensus 222 ~htdEVWfl~FS~nGk-yLAsaSkD~Taiiw~v~~d~~-----------------------~kl~~tlvgh~~~V~yi~w 277 (519)
T KOG0293|consen 222 DHTDEVWFLQFSHNGK-YLASASKDSTAIIWIVVYDVH-----------------------FKLKKTLVGHSQPVSYIMW 277 (519)
T ss_pred hCCCcEEEEEEcCCCe-eEeeccCCceEEEEEEecCcc-----------------------eeeeeeeecccCceEEEEE
Confidence 3999999999999999 999999999999999875332 2346677889999999999
Q ss_pred CCCCCEEEEEeCCCcEEEEecCCceEEeeecc-cCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCC-CC
Q 009715 288 STDGTYLATVGRDGYLRVFDYSKEQLICGGKS-YYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHN-SW 365 (528)
Q Consensus 288 spdg~~l~s~~~dg~i~vwd~~~~~~~~~~~~-~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~~~~~~~~h~-~~ 365 (528)
|||.++|++|+.|..+++||+.+|.+...+.. +...+.+++|.|||..+++|+.|+.+..||++.. .+...++-. ..
T Consensus 278 SPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn-~~~~W~gvr~~~ 356 (519)
T KOG0293|consen 278 SPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGN-ILGNWEGVRDPK 356 (519)
T ss_pred CCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcc-hhhcccccccce
Confidence 99999999999999999999999998877653 3578999999999999999999999999999744 444455433 46
Q ss_pred eEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEEEeecCCCCCCCeecCCCCCccCCceeeeecCCC
Q 009715 366 VSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQP 445 (528)
Q Consensus 366 V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~d~~~~~g~~~~ 445 (528)
|.+++..+ || ..+++...|..|++++......+..+....++.+..++.++ ..+.+.-.+.
T Consensus 357 v~dlait~-------Dg------k~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~------k~~LvnL~~q 417 (519)
T KOG0293|consen 357 VHDLAITY-------DG------KYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDG------KLALVNLQDQ 417 (519)
T ss_pred eEEEEEcC-------CC------cEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCC------cEEEEEcccC
Confidence 99999999 99 78888889999999999888877667766788888888887 4455666678
Q ss_pred CceeeecCCCCceEEeecCCCCeE--EEEEeC---CeEEEEECCCeEEEEeCCCCc--cccCCCccce--EEEccCC-ce
Q 009715 446 APSMRDVPKLSPLVAHRVHTEPLS--GLIFTQ---ESVLTVCREGHIKIWMRPGVA--ESQSSSSETV--LSTSSKD-KP 515 (528)
Q Consensus 446 ~~~~~d~~~~~~~~~~~~h~~~V~--~l~~s~---d~l~t~s~Dg~i~iW~~~~~~--~~~~~~~~~v--l~~spd~-~~ 515 (528)
.+.+||+.....+..+.||...-. .-+|.- +.+++||.|+.|+||++.+++ ....+|...| ++++|.. .+
T Consensus 418 ei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m 497 (519)
T KOG0293|consen 418 EIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEM 497 (519)
T ss_pred eeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHH
Confidence 899999998888889999987533 233543 359999999999999998887 4566899888 8888866 66
Q ss_pred EEEeeeeccc
Q 009715 516 LLSSKVVTSS 525 (528)
Q Consensus 516 l~s~~~~gs~ 525 (528)
+|+++.+|.+
T Consensus 498 ~ASasDDgtI 507 (519)
T KOG0293|consen 498 FASASDDGTI 507 (519)
T ss_pred hhccCCCCeE
Confidence 7888887754
No 68
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.95 E-value=1.5e-26 Score=239.38 Aligned_cols=288 Identities=17% Similarity=0.236 Sum_probs=224.4
Q ss_pred cCCceeEEEEeeCCCcEEEEEe--CCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEE
Q 009715 209 NNSRCTSVTWVPGGDGAFVVGH--ADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIA 286 (528)
Q Consensus 209 h~~~v~~l~~~p~g~~~l~tg~--~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 286 (528)
+...|..++.+|+|. .+++|+ .||.++||+.+.-......... .-...+.....|.+.|+|+.
T Consensus 12 ~~~~IfSIdv~pdg~-~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~--------------~l~k~l~~m~~h~~sv~CVR 76 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGV-KFATGGQVLDGGIVIWSQDPVLDEKEEKNE--------------NLPKHLCTMDDHDGSVNCVR 76 (942)
T ss_pred CCeeEEEEEecCCce-eEecCCccccccceeeccccccchhhhhhc--------------ccchhheeeccccCceeEEE
Confidence 455799999999999 999999 9999999997641111000000 01234555677899999999
Q ss_pred ECCCCCEEEEEeCCCcEEEEecCC------------------ceEEeeecccCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 009715 287 FSTDGTYLATVGRDGYLRVFDYSK------------------EQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVW 348 (528)
Q Consensus 287 ~spdg~~l~s~~~dg~i~vwd~~~------------------~~~~~~~~~~~~~v~~l~~sp~g~~l~sg~~dg~v~vw 348 (528)
|+|||++||+|++|+.|.||.... .+.+..+.+|...|..++|+|++.+|++++.|+.|.||
T Consensus 77 ~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiw 156 (942)
T KOG0973|consen 77 FSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIW 156 (942)
T ss_pred ECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEE
Confidence 999999999999999999999872 13567788999999999999999999999999999999
Q ss_pred ECCCCeEEEEeecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEEEeecC-------CCCC
Q 009715 349 SMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRG-------PLGG 421 (528)
Q Consensus 349 d~~~~~~~~~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~-------~~~~ 421 (528)
|..+.+.+..+++|.+.|-.+.|+| -| ++|++-+.|++|++|++..-.+.+.+... ....
T Consensus 157 n~~tF~~~~vl~~H~s~VKGvs~DP-------~G------ky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~ 223 (942)
T KOG0973|consen 157 NAKTFELLKVLRGHQSLVKGVSWDP-------IG------KYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFL 223 (942)
T ss_pred ccccceeeeeeecccccccceEECC-------cc------CeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceee
Confidence 9999999999999999999999999 89 89999999999999998776666666543 1234
Q ss_pred CCeecCCCCCccCCceeeeecCCCCceeeecCCCCceEEeecCCCCeEEEEEeC-------C------------eEEEEE
Q 009715 422 SPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQ-------E------------SVLTVC 482 (528)
Q Consensus 422 ~~~~s~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~~s~-------d------------~l~t~s 482 (528)
.+.++|+|....--. ++-.-...+.+.+-.+.+.-..+.+|.+++.++.|+| . .+++|+
T Consensus 224 RlSWSPDG~~las~n--A~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgS 301 (942)
T KOG0973|consen 224 RLSWSPDGHHLASPN--AVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGS 301 (942)
T ss_pred ecccCCCcCeecchh--hccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEec
Confidence 567788885211111 1112233455555566666778899999999999997 1 268899
Q ss_pred CCCeEEEEeCCCCccccC---CCccce--EEEccCCceEEEeeeecccc
Q 009715 483 REGHIKIWMRPGVAESQS---SSSETV--LSTSSKDKPLLSSKVVTSSY 526 (528)
Q Consensus 483 ~Dg~i~iW~~~~~~~~~~---~~~~~v--l~~spd~~~l~s~~~~gs~~ 526 (528)
.|++|-||.......... -....| ++|+|||..|..++.+|+++
T Consensus 302 qDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~ 350 (942)
T KOG0973|consen 302 QDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVA 350 (942)
T ss_pred CCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEE
Confidence 999999999755443222 233445 89999999999999999874
No 69
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.95 E-value=1.3e-26 Score=204.16 Aligned_cols=278 Identities=15% Similarity=0.184 Sum_probs=218.6
Q ss_pred CCCCCeEEEEecCCcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCC
Q 009715 165 AKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDG 244 (528)
Q Consensus 165 ~~~~~~l~~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~ 244 (528)
..+|.+|.++..|..+.+|--.. +..+ -...+|.+.|+|++.+-+.+ .+++|+.|.++++||+.++.
T Consensus 19 N~eGDLlFscaKD~~~~vw~s~n-----Gerl-------Gty~GHtGavW~~Did~~s~-~liTGSAD~t~kLWDv~tGk 85 (327)
T KOG0643|consen 19 NREGDLLFSCAKDSTPTVWYSLN-----GERL-------GTYDGHTGAVWCCDIDWDSK-HLITGSADQTAKLWDVETGK 85 (327)
T ss_pred cCCCcEEEEecCCCCceEEEecC-----Ccee-------eeecCCCceEEEEEecCCcc-eeeeccccceeEEEEcCCCc
Confidence 37888899999999999996432 1111 12235999999999999999 89999999999999998732
Q ss_pred CCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCCCCEEEEEeCC-----CcEEEEecC-------Cce
Q 009715 245 AGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRD-----GYLRVFDYS-------KEQ 312 (528)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~~~d-----g~i~vwd~~-------~~~ 312 (528)
.+..|+. ..+|..+.|+++|++++.+..+ +.|.++|++ ..+
T Consensus 86 --------------------------~la~~k~-~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~e 138 (327)
T KOG0643|consen 86 --------------------------QLATWKT-NSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEE 138 (327)
T ss_pred --------------------------EEEEeec-CCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccC
Confidence 2222322 3689999999999988887543 679999997 455
Q ss_pred EEeeecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC-eEEEEeecCCCCeEEEEEecCCCCCCCCCCccceeEEE
Q 009715 313 LICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDR-KVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRF 391 (528)
Q Consensus 313 ~~~~~~~~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~-~~~~~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l 391 (528)
++..+..+...++..-|.|-+++|++|.+||.|.+||.+++ +.+...+.|...|+.++|+| |. .++
T Consensus 139 p~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~-------d~------T~F 205 (327)
T KOG0643|consen 139 PYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSR-------DR------TYF 205 (327)
T ss_pred ceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccC-------Cc------ceE
Confidence 67777778899999999999999999999999999999997 55666678999999999999 88 799
Q ss_pred EEEeCCCeEEEEEccCCeEEEEeecCCCCCCCeecCCCC---CccCCceeeeecCC-----CCceeeecCCCCceEEeec
Q 009715 392 GSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQ---SAHWDNVCPVGTLQ-----PAPSMRDVPKLSPLVAHRV 463 (528)
Q Consensus 392 ~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~s~~~~---~~~~d~~~~~g~~~-----~~~~~~d~~~~~~~~~~~~ 463 (528)
++++.|.+-++||+++-++++++....++.+.++++-.. ...-.....+-+.. ...+.|++.-.+.+...++
T Consensus 206 iT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkG 285 (327)
T KOG0643|consen 206 ITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKG 285 (327)
T ss_pred EecccCccceeeeccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccc
Confidence 999999999999999999999999988998888877432 00000001111111 1234444445567888899
Q ss_pred CCCCeEEEEEeCCe--EEEEECCCeEEEEeCCCC
Q 009715 464 HTEPLSGLIFTQES--VLTVCREGHIKIWMRPGV 495 (528)
Q Consensus 464 h~~~V~~l~~s~d~--l~t~s~Dg~i~iW~~~~~ 495 (528)
|-++|++|+|+|++ .++|+.||.||+..+...
T Consensus 286 HFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~~ 319 (327)
T KOG0643|consen 286 HFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDSN 319 (327)
T ss_pred cccCcceeEECCCCcccccCCCCceEEEEEeccc
Confidence 99999999999996 899999999999876543
No 70
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.6e-26 Score=208.02 Aligned_cols=305 Identities=14% Similarity=0.188 Sum_probs=235.8
Q ss_pred EEEeCCCCCCCCCCCCeEEEEecCCcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeCCc
Q 009715 154 FISDLNSQDKDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADG 233 (528)
Q Consensus 154 ~v~~~~~~~~~~~~~~~l~~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg 233 (528)
-||++... .....+.+++.|.+.+||.+++ ++.+. ...+|.+.|++|+|++.+. ++++++.|+
T Consensus 150 GiW~Vaa~----~tqpi~gtASADhTA~iWs~Es-----g~CL~-------~Y~GH~GSVNsikfh~s~~-L~lTaSGD~ 212 (481)
T KOG0300|consen 150 GIWHVAAD----STQPICGTASADHTARIWSLES-----GACLA-------TYTGHTGSVNSIKFHNSGL-LLLTASGDE 212 (481)
T ss_pred ceeeehhh----cCCcceeecccccceeEEeecc-----cccee-------eecccccceeeEEeccccc-eEEEccCCc
Confidence 44555433 4455777888999999999987 33332 2335999999999999999 999999999
Q ss_pred eEEEEEcC------CCC-----CCCCccccccccceeEEeccCC---CCCCCeEEEeecCCCeEEEEECCCCCEEEEEeC
Q 009715 234 NLYVYEKS------KDG-----AGDSSFPVIKDQTQFSVAHPRY---SKSNPIARWHICQGSINSIAFSTDGTYLATVGR 299 (528)
Q Consensus 234 ~v~vwd~~------~~~-----~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~~~ 299 (528)
+..||... ... ..+.........+.+.-...+. .-.-|+..+.+|.+.|.+..|-.-|+.+++++-
T Consensus 213 taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSW 292 (481)
T KOG0300|consen 213 TAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASW 292 (481)
T ss_pred chHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeec
Confidence 99999832 110 0001111111111111100000 123467789999999999999999999999999
Q ss_pred CCcEEEEecCCceEEeeecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC-eEEEEeecCCCCeEEEEEecCCCCC
Q 009715 300 DGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDR-KVVAWGEGHNSWVSGVAFDSYWSQP 378 (528)
Q Consensus 300 dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~-~~~~~~~~h~~~V~~v~f~p~~~~~ 378 (528)
|.+..+||+++++.+..+.+|....+.++-+|..+++++.+.|-+.++||++.. ..+..|+||...|+++.|..
T Consensus 293 DRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~----- 367 (481)
T KOG0300|consen 293 DRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNT----- 367 (481)
T ss_pred cccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEec-----
Confidence 999999999999999999999999999999999999999999999999999864 45788999999999999987
Q ss_pred CCCCCccceeEEEEEEeCCCeEEEEEccCC-eEEEEeecCCCCCCCeecCCCCCccCCceeeeecCCCCceeeecCCCC-
Q 009715 379 NSDGTAETVMYRFGSVGQDTRLLLWDLEMD-EIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLS- 456 (528)
Q Consensus 379 ~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~-~~~~~~~~~~~~~~~~~s~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~- 456 (528)
|. .+++++.|.+|++||+++. .++.+++...+...++++.+. ..|++-..+.-+++||+....
T Consensus 368 --dd-------~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~------~iIAiPhDNRqvRlfDlnG~Rl 432 (481)
T KOG0300|consen 368 --DD-------RVVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGH------PIIAIPHDNRQVRLFDLNGNRL 432 (481)
T ss_pred --CC-------ceeecCCCceEEEeeeccccCcceeeecCCccceeEeecCC------ceEEeccCCceEEEEecCCCcc
Confidence 64 7999999999999999864 567888887888888887776 344555556667888875443
Q ss_pred ---ceEEeecCCCCeEEEEEeCCe----EEEEECCCeEEEEeCCCC
Q 009715 457 ---PLVAHRVHTEPLSGLIFTQES----VLTVCREGHIKIWMRPGV 495 (528)
Q Consensus 457 ---~~~~~~~h~~~V~~l~~s~d~----l~t~s~Dg~i~iW~~~~~ 495 (528)
|-..-++|...|.|++|..+. |++|+.|..+.-|++...
T Consensus 433 aRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 433 ARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred ccCCcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 334556899999999999863 999999999999997653
No 71
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.95 E-value=1.1e-27 Score=215.91 Aligned_cols=241 Identities=19% Similarity=0.280 Sum_probs=201.1
Q ss_pred cCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEEC
Q 009715 209 NNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFS 288 (528)
Q Consensus 209 h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 288 (528)
.++-+.|..|+|||+ +|++|+.||-|.+|+..++ .....+. .+.-..+-.+..+|.|+.|+
T Consensus 212 ~KSh~EcA~FSPDgq-yLvsgSvDGFiEVWny~~G-KlrKDLk-----------------YQAqd~fMMmd~aVlci~FS 272 (508)
T KOG0275|consen 212 QKSHVECARFSPDGQ-YLVSGSVDGFIEVWNYTTG-KLRKDLK-----------------YQAQDNFMMMDDAVLCISFS 272 (508)
T ss_pred cccchhheeeCCCCc-eEeeccccceeeeehhccc-hhhhhhh-----------------hhhhcceeecccceEEEeec
Confidence 566789999999999 9999999999999998763 2222111 11122234457899999999
Q ss_pred CCCCEEEEEeCCCcEEEEecCCceEEeeec-ccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCeE
Q 009715 289 TDGTYLATVGRDGYLRVFDYSKEQLICGGK-SYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVS 367 (528)
Q Consensus 289 pdg~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~~~~~~~~h~~~V~ 367 (528)
.|...||+|+.||.|++|.+.+|+++..+. .|...|+|+.|+.|+..+++++.|..++|--+++|+++..++||.+.|+
T Consensus 273 RDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn 352 (508)
T KOG0275|consen 273 RDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVN 352 (508)
T ss_pred ccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCcccccc
Confidence 999999999999999999999999999886 7999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEEEeecCCCCCCCeecCCCCCccCCceeeeecCCCCc
Q 009715 368 GVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAP 447 (528)
Q Consensus 368 ~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~d~~~~~g~~~~~~ 447 (528)
.+.|.+ || .++++++.||+|++|+.++.+|+.+++..
T Consensus 353 ~a~ft~-------dG------~~iisaSsDgtvkvW~~KtteC~~Tfk~~------------------------------ 389 (508)
T KOG0275|consen 353 EATFTD-------DG------HHIISASSDGTVKVWHGKTTECLSTFKPL------------------------------ 389 (508)
T ss_pred ceEEcC-------CC------CeEEEecCCccEEEecCcchhhhhhccCC------------------------------
Confidence 999999 99 89999999999999999999998777641
Q ss_pred eeeecCCCCceEEeecCCCCeEEEEEeCC---eEEEEECCCeEEEEeCCCCccccCC--Cc---cce-EEEccCCceEEE
Q 009715 448 SMRDVPKLSPLVAHRVHTEPLSGLIFTQE---SVLTVCREGHIKIWMRPGVAESQSS--SS---ETV-LSTSSKDKPLLS 518 (528)
Q Consensus 448 ~~~d~~~~~~~~~~~~h~~~V~~l~~s~d---~l~t~s~Dg~i~iW~~~~~~~~~~~--~~---~~v-l~~spd~~~l~s 518 (528)
+-+.+|.++..-|. .++.|-...+|.|-++.++....+. .. +-| ..+||.|.++..
T Consensus 390 ---------------~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYc 454 (508)
T KOG0275|consen 390 ---------------GTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFINAILSPKGEWIYC 454 (508)
T ss_pred ---------------CCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCCceEEEEecCCCcEEEE
Confidence 12456777777664 5899999999999999987755442 22 223 566999999988
Q ss_pred eeeecccc
Q 009715 519 SKVVTSSY 526 (528)
Q Consensus 519 ~~~~gs~~ 526 (528)
...++..|
T Consensus 455 igED~vlY 462 (508)
T KOG0275|consen 455 IGEDGVLY 462 (508)
T ss_pred EccCcEEE
Confidence 87776654
No 72
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.95 E-value=2.4e-27 Score=213.78 Aligned_cols=277 Identities=14% Similarity=0.200 Sum_probs=224.5
Q ss_pred CCCCCeEEEEecCCcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCC
Q 009715 165 AKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDG 244 (528)
Q Consensus 165 ~~~~~~l~~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~ 244 (528)
+||+.+|++|+-||-|.+||..+......-+. .-...+-.+..+|.|+.|+.|.. +|++|+.||.|+||.+.++
T Consensus 222 SPDgqyLvsgSvDGFiEVWny~~GKlrKDLkY----QAqd~fMMmd~aVlci~FSRDsE-MlAsGsqDGkIKvWri~tG- 295 (508)
T KOG0275|consen 222 SPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKY----QAQDNFMMMDDAVLCISFSRDSE-MLASGSQDGKIKVWRIETG- 295 (508)
T ss_pred CCCCceEeeccccceeeeehhccchhhhhhhh----hhhcceeecccceEEEeecccHH-HhhccCcCCcEEEEEEecc-
Confidence 89999999999999999999876322111111 11223345889999999999999 9999999999999999872
Q ss_pred CCCCccccccccceeEEeccCCCCCCCeEEEe-ecCCCeEEEEECCCCCEEEEEeCCCcEEEEecCCceEEeeecccCCC
Q 009715 245 AGDSSFPVIKDQTQFSVAHPRYSKSNPIARWH-ICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGA 323 (528)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~spdg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~ 323 (528)
..++++. +|+..|+|+.|+.|+..+++++.|..+|+.-+++|++++.+++|...
T Consensus 296 -------------------------~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSy 350 (508)
T KOG0275|consen 296 -------------------------QCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSY 350 (508)
T ss_pred -------------------------hHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCcccc
Confidence 2344443 68899999999999999999999999999999999999999999999
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeec--CCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEE
Q 009715 324 LLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEG--HNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLL 401 (528)
Q Consensus 324 v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~~~~~~~~--h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~ 401 (528)
|+...|.+||.++++++.||+|+||+.++.+|+.+++. ..-+|+++..-|. +. ..++.|...++|.
T Consensus 351 vn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PK------np------eh~iVCNrsntv~ 418 (508)
T KOG0275|consen 351 VNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPK------NP------EHFIVCNRSNTVY 418 (508)
T ss_pred ccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCC------CC------ceEEEEcCCCeEE
Confidence 99999999999999999999999999999999998874 4567888888772 22 4788898999999
Q ss_pred EEEccCCeEEEEeecCCC-CC---CCeecCCCCCccCCceeeeecCCCCceeeecCCCCceEEeecCCCCeEEEEEeCCe
Q 009715 402 LWDLEMDEIVVPLRRGPL-GG---SPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES 477 (528)
Q Consensus 402 lwd~~~~~~~~~~~~~~~-~~---~~~~s~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~~s~d~ 477 (528)
+-++. |+.+..+..+.. .. +..+++.| ..+..-..+..++.+.+..++....+..|+..|-.++-+|..
T Consensus 419 imn~q-GQvVrsfsSGkREgGdFi~~~lSpkG------ewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHq 491 (508)
T KOG0275|consen 419 IMNMQ-GQVVRSFSSGKREGGDFINAILSPKG------EWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQ 491 (508)
T ss_pred EEecc-ceEEeeeccCCccCCceEEEEecCCC------cEEEEEccCcEEEEEEeecCceeeeeecccccccccccCccc
Confidence 98874 667777754321 11 22334443 233444567777888888888889999999999999999964
Q ss_pred --EEEEECCCeEEEEe
Q 009715 478 --VLTVCREGHIKIWM 491 (528)
Q Consensus 478 --l~t~s~Dg~i~iW~ 491 (528)
|++-+.||.+++|.
T Consensus 492 NllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 492 NLLASYSEDGLLKLWK 507 (508)
T ss_pred chhhhhcccchhhhcC
Confidence 89999999999995
No 73
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.95 E-value=4e-27 Score=223.19 Aligned_cols=245 Identities=19% Similarity=0.281 Sum_probs=199.7
Q ss_pred CceeeccCCCCCCCccccCCcccCCcccCCCCCCcceeeeCCCccEEEEeCCC-cEEEEeCCCCCCC------CCCCCeE
Q 009715 99 GSRTLGFGGGNGGSKSISGSSRIGSLGASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKD------AKDGHDL 171 (528)
Q Consensus 99 g~~~~sf~gh~~~v~~v~~s~~~~~~~~s~s~~s~~~~~~~~~g~~~~~~~~~-~i~v~~~~~~~~~------~~~~~~l 171 (528)
-+....|.||+.+|+++.|.|-.+.|++|+++ |+.+.+|++-+ .-.+..+..+.+. +.++..+
T Consensus 204 kk~~~~~~gH~kgvsai~~fp~~~hLlLS~gm----------D~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~f 273 (503)
T KOG0282|consen 204 KKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGM----------DGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSF 273 (503)
T ss_pred HhheeeccCCccccchhhhccceeeEEEecCC----------CceEEEEEEecCcceehhhhcchhhhhhhhccccCCee
Confidence 34557889999999999999988899999998 89999998754 4455555554443 8899999
Q ss_pred EEEecCCcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccc
Q 009715 172 LIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFP 251 (528)
Q Consensus 172 ~~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~ 251 (528)
++++-|+.|++||+++. +.. ..|. ....++|+.|+|++.++|++|+.|+.|+.||++.+
T Consensus 274 LS~sfD~~lKlwDtETG-----~~~---~~f~-----~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~-------- 332 (503)
T KOG0282|consen 274 LSASFDRFLKLWDTETG-----QVL---SRFH-----LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSG-------- 332 (503)
T ss_pred eeeecceeeeeeccccc-----eEE---EEEe-----cCCCceeeecCCCCCcEEEEecCCCcEEEEeccch--------
Confidence 99999999999999982 222 1222 34578899999999779999999999999999873
Q ss_pred cccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCCCCEEEEEeCCCcEEEEecCCceEE-----------------
Q 009715 252 VIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLI----------------- 314 (528)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~~~dg~i~vwd~~~~~~~----------------- 314 (528)
+.++.+..|-++|..+.|-++++++++.+.|+.++||+...+-.+
T Consensus 333 ------------------kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~ 394 (503)
T KOG0282|consen 333 ------------------KVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLH 394 (503)
T ss_pred ------------------HHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecC
Confidence 345556667789999999999999999999999999987643111
Q ss_pred -----------------------------eeecccC--CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCC
Q 009715 315 -----------------------------CGGKSYY--GALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHN 363 (528)
Q Consensus 315 -----------------------------~~~~~~~--~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~~~~~~~~h~ 363 (528)
..+++|. +.-..|.|||||++|++|+.||.+.+||.++-+.+..+++|.
T Consensus 395 P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~ 474 (503)
T KOG0282|consen 395 PNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHD 474 (503)
T ss_pred CCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCC
Confidence 1123443 445678999999999999999999999999999999999999
Q ss_pred CCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEE
Q 009715 364 SWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWD 404 (528)
Q Consensus 364 ~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd 404 (528)
..+..+.|+|. .- ..+++++.||.|++||
T Consensus 475 ~~ci~v~wHP~------e~------Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 475 QPCIGVDWHPV------EP------SKVATCGWDGLIKIWD 503 (503)
T ss_pred cceEEEEecCC------Cc------ceeEecccCceeEecC
Confidence 99999999993 22 6899999999999997
No 74
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.95 E-value=2.1e-26 Score=219.58 Aligned_cols=294 Identities=17% Similarity=0.245 Sum_probs=221.9
Q ss_pred CCCCCeEEEEecCCcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCC
Q 009715 165 AKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDG 244 (528)
Q Consensus 165 ~~~~~~l~~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~ 244 (528)
.+.|..|++|+.|-+|++||+...... ...|..-.......|+.++|++.|. .|++.+.....+|+|-. |
T Consensus 176 Dp~GaR~~sGs~Dy~v~~wDf~gMdas-------~~~fr~l~P~E~h~i~sl~ys~Tg~-~iLvvsg~aqakl~DRd--G 245 (641)
T KOG0772|consen 176 DPSGARFVSGSLDYTVKFWDFQGMDAS-------MRSFRQLQPCETHQINSLQYSVTGD-QILVVSGSAQAKLLDRD--G 245 (641)
T ss_pred cCCCceeeeccccceEEEEeccccccc-------chhhhccCcccccccceeeecCCCC-eEEEEecCcceeEEccC--C
Confidence 588999999999999999998752110 0112222223555899999999999 77777778899999965 3
Q ss_pred CCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECC-CCCEEEEEeCCCcEEEEecCCceE-Eeeec----
Q 009715 245 AGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST-DGTYLATVGRDGYLRVFDYSKEQL-ICGGK---- 318 (528)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp-dg~~l~s~~~dg~i~vwd~~~~~~-~~~~~---- 318 (528)
.....+. ...+|. .-+..-++|...++|.+|+| +...+++++.||++|+||+...+. +..++
T Consensus 246 ~~~~e~~---KGDQYI---------~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~ 313 (641)
T KOG0772|consen 246 FEIVEFS---KGDQYI---------RDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPA 313 (641)
T ss_pred ceeeeee---ccchhh---------hhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccC
Confidence 2221111 111111 12233467889999999999 456899999999999999975432 22222
Q ss_pred -ccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe---EEEEeecCCC--CeEEEEEecCCCCCCCCCCccceeEEEE
Q 009715 319 -SYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRK---VVAWGEGHNS--WVSGVAFDSYWSQPNSDGTAETVMYRFG 392 (528)
Q Consensus 319 -~~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~---~~~~~~~h~~--~V~~v~f~p~~~~~~~dg~~~~~~~~l~ 392 (528)
+..-++..++|+|||++||+|+.||.|.+|+..... .+..-++|.. .|++|.|++ || ++|+
T Consensus 314 ~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~-------dg------~~Ll 380 (641)
T KOG0772|consen 314 GGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSY-------DG------NYLL 380 (641)
T ss_pred CCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEecc-------cc------chhh
Confidence 223478899999999999999999999999986532 2344457887 899999999 99 8999
Q ss_pred EEeCCCeEEEEEccCCe-EEEEee---cCCCCCCCeecCCCCCccCCceeeeecCCCCceeeecCCCCceEEeecCCCCe
Q 009715 393 SVGQDTRLLLWDLEMDE-IVVPLR---RGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPL 468 (528)
Q Consensus 393 s~s~D~~i~lwd~~~~~-~~~~~~---~~~~~~~~~~s~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V 468 (528)
+-+.|.++++||++..+ ++.... ...+...++|+++.....-...++-+...+.+.++|..+.+.+..+......|
T Consensus 381 SRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSv 460 (641)
T KOG0772|consen 381 SRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASV 460 (641)
T ss_pred hccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceE
Confidence 99999999999999754 333332 22466788999998766666666677777789999999999999998889999
Q ss_pred EEEEEeCC--eEEEEECCCeEEEEeCC
Q 009715 469 SGLIFTQE--SVLTVCREGHIKIWMRP 493 (528)
Q Consensus 469 ~~l~~s~d--~l~t~s~Dg~i~iW~~~ 493 (528)
..+.|+|. .|+.++.||+++++==+
T Consensus 461 v~~~WhpkLNQi~~gsgdG~~~vyYdp 487 (641)
T KOG0772|consen 461 VRCLWHPKLNQIFAGSGDGTAHVYYDP 487 (641)
T ss_pred EEEeecchhhheeeecCCCceEEEECc
Confidence 99999995 59999999999988533
No 75
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=3.2e-25 Score=199.88 Aligned_cols=275 Identities=17% Similarity=0.227 Sum_probs=212.7
Q ss_pred eEEEEecCCcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCc
Q 009715 170 DLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSS 249 (528)
Q Consensus 170 ~l~~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~ 249 (528)
.+++|+....|+-+++.-......+.....+...-.+..|.++|++++.+ +. ++|+|+.|-+|+|||+++
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~-~~aSGssDetI~IYDm~k------- 72 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS--GP-YVASGSSDETIHIYDMRK------- 72 (362)
T ss_pred eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec--ce-eEeccCCCCcEEEEeccc-------
Confidence 47888888888888776432111111111111111234599999999994 66 999999999999999986
Q ss_pred cccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCCCC--EEEEEeCCCcEEEEecCCceEEeeecccCCCeEEE
Q 009715 250 FPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGT--YLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCC 327 (528)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spdg~--~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l 327 (528)
...+..+-.|.+.|+++.|.++-. .|++|+.||.|.+|+....+++..+++|.+.|+.+
T Consensus 73 -------------------~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~l 133 (362)
T KOG0294|consen 73 -------------------RKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDL 133 (362)
T ss_pred -------------------hhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeeccccccccee
Confidence 233445556789999999998654 89999999999999999999999999999999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccC
Q 009715 328 AWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEM 407 (528)
Q Consensus 328 ~~sp~g~~l~sg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~ 407 (528)
+.+|.+++.++.+.|+.+++||+-.|+.-..+. -...-+.|.|+| .| .+++..+.+ .|-+|.+..
T Consensus 134 siHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~-L~~~at~v~w~~-------~G------d~F~v~~~~-~i~i~q~d~ 198 (362)
T KOG0294|consen 134 SIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLN-LKNKATLVSWSP-------QG------DHFVVSGRN-KIDIYQLDN 198 (362)
T ss_pred EecCCCceEEEEcCCceeeeehhhcCccceeec-cCCcceeeEEcC-------CC------CEEEEEecc-EEEEEeccc
Confidence 999999999999999999999999887654444 223334499999 88 456665544 689999888
Q ss_pred CeEEEEeecCCCCCCCeecCCCCCccCCceeeeecCCCCceeeecCCCCceEEeecCCCCeEEEEEeCC----eEEEEEC
Q 009715 408 DEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE----SVLTVCR 483 (528)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~s~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~~s~d----~l~t~s~ 483 (528)
......+.......++.|... ..+.+|..+..+..||.....++..+.+|..+|.++.+-.+ +|+|+|.
T Consensus 199 A~v~~~i~~~~r~l~~~~l~~-------~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSS 271 (362)
T KOG0294|consen 199 ASVFREIENPKRILCATFLDG-------SELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASS 271 (362)
T ss_pred HhHhhhhhccccceeeeecCC-------ceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEecc
Confidence 776666655433334444332 45678888899999999999999999999999999996544 6999999
Q ss_pred CCeEEEEeCCCC
Q 009715 484 EGHIKIWMRPGV 495 (528)
Q Consensus 484 Dg~i~iW~~~~~ 495 (528)
||.|+|||+...
T Consensus 272 DG~I~vWd~~~~ 283 (362)
T KOG0294|consen 272 DGFIKVWDIDME 283 (362)
T ss_pred CceEEEEEcccc
Confidence 999999998765
No 76
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.8e-26 Score=233.09 Aligned_cols=235 Identities=24% Similarity=0.368 Sum_probs=193.3
Q ss_pred eEEEe-ecCCCeEEEEECCCCCEEEEEeCCCcEEEEecCC----------------------------------------
Q 009715 272 IARWH-ICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSK---------------------------------------- 310 (528)
Q Consensus 272 ~~~~~-~h~~~v~~l~~spdg~~l~s~~~dg~i~vwd~~~---------------------------------------- 310 (528)
.+.++ .|.++|.++.|++||+|||+|+.|+.|+||.+..
T Consensus 259 ~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~ 338 (712)
T KOG0283|consen 259 VQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSS 338 (712)
T ss_pred eeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccc
Confidence 34455 7999999999999999999999999999998754
Q ss_pred --------------------ceEEeeecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCeEEEE
Q 009715 311 --------------------EQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVA 370 (528)
Q Consensus 311 --------------------~~~~~~~~~~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~v~ 370 (528)
.++++.+++|.+.|+.|.||.++ +|++++.|.+|++|++...+|++.|. |.+.|+||+
T Consensus 339 ~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVa 416 (712)
T KOG0283|consen 339 SRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVA 416 (712)
T ss_pred cccccCCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEEe-cCCeeEEEE
Confidence 01234457899999999999776 89999999999999999999999998 999999999
Q ss_pred EecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEEEeecCCCCCCCeecCCCCCccCCceeeeecCCCCceee
Q 009715 371 FDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMR 450 (528)
Q Consensus 371 f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~d~~~~~g~~~~~~~~~ 450 (528)
|+|. |. ++|++|+.|++||||++...+.+.-.....-+++++|+|+| ....+|++.+..++|
T Consensus 417 FnPv------DD------ryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdG------k~avIGt~~G~C~fY 478 (712)
T KOG0283|consen 417 FNPV------DD------RYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDG------KGAVIGTFNGYCRFY 478 (712)
T ss_pred eccc------CC------CcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCC------ceEEEEEeccEEEEE
Confidence 9994 65 79999999999999999998888777777889999999998 456789999999999
Q ss_pred ecCCCCceEEeecC--------CCCeEEEEEeC---CeEEEEECCCeEEEEeCCCCccc--cCCC---ccce-EEEccCC
Q 009715 451 DVPKLSPLVAHRVH--------TEPLSGLIFTQ---ESVLTVCREGHIKIWMRPGVAES--QSSS---SETV-LSTSSKD 513 (528)
Q Consensus 451 d~~~~~~~~~~~~h--------~~~V~~l~~s~---d~l~t~s~Dg~i~iW~~~~~~~~--~~~~---~~~v-l~~spd~ 513 (528)
+....+.......+ ...|+++.|.| +.|+..+.|..|||+|....... ..++ ...+ -+|+.||
T Consensus 479 ~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dg 558 (712)
T KOG0283|consen 479 DTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDG 558 (712)
T ss_pred EccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCC
Confidence 99887766554422 22799999997 35999999999999998544321 1121 1223 7789999
Q ss_pred ceEEEeeeecccc
Q 009715 514 KPLLSSKVVTSSY 526 (528)
Q Consensus 514 ~~l~s~~~~gs~~ 526 (528)
++|++++.+.-+|
T Consensus 559 k~IVs~seDs~VY 571 (712)
T KOG0283|consen 559 KHIVSASEDSWVY 571 (712)
T ss_pred CEEEEeecCceEE
Confidence 9999998764443
No 77
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=7.9e-26 Score=214.83 Aligned_cols=229 Identities=17% Similarity=0.200 Sum_probs=190.8
Q ss_pred CCCCeEEEEecCCcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCC
Q 009715 166 KDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGA 245 (528)
Q Consensus 166 ~~~~~l~~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~ 245 (528)
.||+.|++|...|.|++||+.+. ........|+.+|..+.|+|++..+|++|+.|+.+++||+.+.
T Consensus 78 ~DG~LlaaGD~sG~V~vfD~k~r------------~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a-- 143 (487)
T KOG0310|consen 78 SDGRLLAAGDESGHVKVFDMKSR------------VILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTA-- 143 (487)
T ss_pred cCCeEEEccCCcCcEEEeccccH------------HHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCc--
Confidence 78999999999999999996541 1122233499999999999999889999999999999999852
Q ss_pred CCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECC-CCCEEEEEeCCCcEEEEecCCc-eEEeeecccCCC
Q 009715 246 GDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST-DGTYLATVGRDGYLRVFDYSKE-QLICGGKSYYGA 323 (528)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp-dg~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~ 323 (528)
.....+.+|+..|+|.+|+| ++..+++|+.||.|++||++.. ..+..+. |..+
T Consensus 144 ------------------------~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~p 198 (487)
T KOG0310|consen 144 ------------------------YVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCP 198 (487)
T ss_pred ------------------------EEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCc
Confidence 12446788999999999999 6779999999999999999977 5566664 8999
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCC-eEEEEeecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEE
Q 009715 324 LLCCAWSMDGKYILTGGEDDLVQVWSMEDR-KVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLL 402 (528)
Q Consensus 324 v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~-~~~~~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~l 402 (528)
|..+.+-|.|.++++++. ..|+|||+-+| +.+..+..|...|+|+++.. ++ .+|++++.|+.|++
T Consensus 199 Ve~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s-------~~------~rLlS~sLD~~VKV 264 (487)
T KOG0310|consen 199 VESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLAS-------DS------TRLLSGSLDRHVKV 264 (487)
T ss_pred eeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhcccceEEEEEeec-------CC------ceEeecccccceEE
Confidence 999999999999999874 58999999965 55555556999999999988 88 79999999999999
Q ss_pred EEccCCeEEEEeecCCCCCCCeecCCCCCccCCceeeeecCCCCceeeecCCCCceEEeecCCCCeEEEEEeCC--eEEE
Q 009715 403 WDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE--SVLT 480 (528)
Q Consensus 403 wd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~~s~d--~l~t 480 (528)
||+.+.+.+..+.. .++|.+++.+|+ .++.
T Consensus 265 fd~t~~Kvv~s~~~------------------------------------------------~~pvLsiavs~dd~t~vi 296 (487)
T KOG0310|consen 265 FDTTNYKVVHSWKY------------------------------------------------PGPVLSIAVSPDDQTVVI 296 (487)
T ss_pred EEccceEEEEeeec------------------------------------------------ccceeeEEecCCCceEEE
Confidence 99888887766543 578899999995 4888
Q ss_pred EECCCeEEEEeCCCC
Q 009715 481 VCREGHIKIWMRPGV 495 (528)
Q Consensus 481 ~s~Dg~i~iW~~~~~ 495 (528)
|..||.+-+=+...+
T Consensus 297 GmsnGlv~~rr~~~k 311 (487)
T KOG0310|consen 297 GMSNGLVSIRRREVK 311 (487)
T ss_pred ecccceeeeehhhcc
Confidence 889998877755443
No 78
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=2.6e-25 Score=199.36 Aligned_cols=264 Identities=13% Similarity=0.214 Sum_probs=202.3
Q ss_pred cCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEEC
Q 009715 209 NNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFS 288 (528)
Q Consensus 209 h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 288 (528)
..+.|.+|+|+|...+++++++.||+||+|+++..+... + +..+.|.++|.+++|+
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~-----------------------~-ka~~~~~~PvL~v~Ws 81 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLV-----------------------P-KAQQSHDGPVLDVCWS 81 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCccc-----------------------c-hhhhccCCCeEEEEEc
Confidence 567899999999777688899999999999998643221 1 2334577999999999
Q ss_pred CCCCEEEEEeCCCcEEEEecCCceEEeeecccCCCeEEEEEcCCCC--EEEEEeCCCcEEEEECCCCeEEEEeecCCCCe
Q 009715 289 TDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGK--YILTGGEDDLVQVWSMEDRKVVAWGEGHNSWV 366 (528)
Q Consensus 289 pdg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~g~--~l~sg~~dg~v~vwd~~~~~~~~~~~~h~~~V 366 (528)
.||..+++++.|+.+++||+.+++... +..|.++|.++.|-+... .|++|+.|.+|+.||++...++.+++ -...|
T Consensus 82 ddgskVf~g~~Dk~~k~wDL~S~Q~~~-v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRv 159 (347)
T KOG0647|consen 82 DDGSKVFSGGCDKQAKLWDLASGQVSQ-VAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERV 159 (347)
T ss_pred cCCceEEeeccCCceEEEEccCCCeee-eeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-cccee
Confidence 999999999999999999999997654 566999999999988665 89999999999999999999999887 56667
Q ss_pred EEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEEEeecC---CCCCCCeecCCCCCccCCceeeeecC
Q 009715 367 SGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRG---PLGGSPTFSTGSQSAHWDNVCPVGTL 443 (528)
Q Consensus 367 ~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~---~~~~~~~~s~~~~~~~~d~~~~~g~~ 443 (528)
.++..-. .+++.+..++.|.+|+|+.+......... ....+++.-.+. ...++|+.
T Consensus 160 Ya~Dv~~---------------pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~------~~~alGsi 218 (347)
T KOG0647|consen 160 YAADVLY---------------PMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDK------DGFALGSI 218 (347)
T ss_pred eehhccC---------------ceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecC------CceEeeee
Confidence 7776532 37888888999999999876543332221 123344443333 22278888
Q ss_pred CCCceeeecCCC--CceEEeecCCC---------CeEEEEEeCCe--EEEEECCCeEEEEeCCCCcccc--CCCccce--
Q 009715 444 QPAPSMRDVPKL--SPLVAHRVHTE---------PLSGLIFTQES--VLTVCREGHIKIWMRPGVAESQ--SSSSETV-- 506 (528)
Q Consensus 444 ~~~~~~~d~~~~--~~~~~~~~h~~---------~V~~l~~s~d~--l~t~s~Dg~i~iW~~~~~~~~~--~~~~~~v-- 506 (528)
++.+.+..+... +.-..++.|.. .|++|+|+|.. |+|+|.||++.+||-....... ..+...|
T Consensus 219 EGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItc 298 (347)
T KOG0647|consen 219 EGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITC 298 (347)
T ss_pred cceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccce
Confidence 888888777654 44456667763 47889999953 9999999999999977654322 3466666
Q ss_pred EEEccCCceEEEe
Q 009715 507 LSTSSKDKPLLSS 519 (528)
Q Consensus 507 l~~spd~~~l~s~ 519 (528)
.+|+.+|.++|=+
T Consensus 299 c~fn~~G~ifaYA 311 (347)
T KOG0647|consen 299 CSFNRNGSIFAYA 311 (347)
T ss_pred eEecCCCCEEEEE
Confidence 8889999988744
No 79
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.94 E-value=2.9e-25 Score=207.82 Aligned_cols=267 Identities=16% Similarity=0.218 Sum_probs=220.4
Q ss_pred CCCCeEEEEecCCcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCC
Q 009715 166 KDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGA 245 (528)
Q Consensus 166 ~~~~~l~~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~ 245 (528)
+..+.+++|+.|..+.++|... .+......+|...|+.+.|+|+.. .+++++.|-.|+||......
T Consensus 229 ~s~~~ilTGG~d~~av~~d~~s------------~q~l~~~~Gh~kki~~v~~~~~~~-~v~~aSad~~i~vws~~~~s- 294 (506)
T KOG0289|consen 229 PSSSKILTGGEDKTAVLFDKPS------------NQILATLKGHTKKITSVKFHKDLD-TVITASADEIIRVWSVPLSS- 294 (506)
T ss_pred CCCCcceecCCCCceEEEecch------------hhhhhhccCcceEEEEEEeccchh-heeecCCcceEEeecccccc-
Confidence 3457889999999999999876 233444556999999999999999 89999999999999986521
Q ss_pred CCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCCCCEEEEEeCCCcEEEEecCCceEEeeecc--cCCC
Q 009715 246 GDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKS--YYGA 323 (528)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~~~dg~i~vwd~~~~~~~~~~~~--~~~~ 323 (528)
.......|+.+|+.+..+|.|.||++++.|+...+.|++++..+..... ..-.
T Consensus 295 -------------------------~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~ 349 (506)
T KOG0289|consen 295 -------------------------EPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVE 349 (506)
T ss_pred -------------------------CccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccce
Confidence 2334456789999999999999999999999999999999998876543 2235
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEE
Q 009715 324 LLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLW 403 (528)
Q Consensus 324 v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lw 403 (528)
+.+.+|+|||.+|.+|..|+.|+|||+.++..+..|.+|.++|..++|+. +| |+|+++.+|+.|++|
T Consensus 350 ~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsE-------NG------Y~Lat~add~~V~lw 416 (506)
T KOG0289|consen 350 YTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSE-------NG------YWLATAADDGSVKLW 416 (506)
T ss_pred eEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEecc-------Cc------eEEEEEecCCeEEEE
Confidence 89999999999999999999999999999999999999999999999999 99 999999999999999
Q ss_pred EccCCeEEEEeecCCC--CCCCeecCCCCCccCCceeeeecCCCCceeeecC----CCCceEEeecCCCCeEEEEEeCC-
Q 009715 404 DLEMDEIVVPLRRGPL--GGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVP----KLSPLVAHRVHTEPLSGLIFTQE- 476 (528)
Q Consensus 404 d~~~~~~~~~~~~~~~--~~~~~~s~~~~~~~~d~~~~~g~~~~~~~~~d~~----~~~~~~~~~~h~~~V~~l~~s~d- 476 (528)
|+|..+...++..... +..+.|...|+ .+.++. ..+++|-.. .+..+..+..|.+..+.+.|...
T Consensus 417 DLRKl~n~kt~~l~~~~~v~s~~fD~SGt------~L~~~g--~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~a 488 (506)
T KOG0289|consen 417 DLRKLKNFKTIQLDEKKEVNSLSFDQSGT------YLGIAG--SDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHA 488 (506)
T ss_pred EehhhcccceeeccccccceeEEEcCCCC------eEEeec--ceeEEEEEecccccceeeehhhhcccccceeeecccc
Confidence 9999998888776543 55666655553 233332 334444433 56678888889999999999985
Q ss_pred -eEEEEECCCeEEEEeC
Q 009715 477 -SVLTVCREGHIKIWMR 492 (528)
Q Consensus 477 -~l~t~s~Dg~i~iW~~ 492 (528)
+++++|.|..++++.+
T Consensus 489 q~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 489 QYLASTSMDAILRLYAL 505 (506)
T ss_pred eEEeeccchhheEEeec
Confidence 5999999999998865
No 80
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=1.4e-26 Score=212.07 Aligned_cols=272 Identities=15% Similarity=0.170 Sum_probs=227.8
Q ss_pred cCCcccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeE
Q 009715 204 KDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSIN 283 (528)
Q Consensus 204 ~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 283 (528)
....+|.+.|.|++=+|.....+++|+.||.|+|||+.. .+.+..++.|.+.|+
T Consensus 60 ~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsq--------------------------R~~~~~f~AH~G~V~ 113 (433)
T KOG0268|consen 60 GSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQ--------------------------RECIRTFKAHEGLVR 113 (433)
T ss_pred hhccccccccchhhcCcchhhhhhccccCceEEEEehhh--------------------------hhhhheeecccCcee
Confidence 334469999999999999855899999999999999975 467788899999999
Q ss_pred EEEECCCCCEEEEEeCCCcEEEEecCCceEEeeecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCC
Q 009715 284 SIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHN 363 (528)
Q Consensus 284 ~l~~spdg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~~~~~~~~h~ 363 (528)
.|++.. ..++++++|.+|+.|-++- .++.++.+ ...+..+.-+..+..+++++++ |.|||.+...++..+.--.
T Consensus 114 Gi~v~~--~~~~tvgdDKtvK~wk~~~-~p~~tilg-~s~~~gIdh~~~~~~FaTcGe~--i~IWD~~R~~Pv~smswG~ 187 (433)
T KOG0268|consen 114 GICVTQ--TSFFTVGDDKTVKQWKIDG-PPLHTILG-KSVYLGIDHHRKNSVFATCGEQ--IDIWDEQRDNPVSSMSWGA 187 (433)
T ss_pred eEEecc--cceEEecCCcceeeeeccC-Ccceeeec-cccccccccccccccccccCce--eeecccccCCccceeecCC
Confidence 999987 6789999999999999874 46666653 4567778877777889999864 9999999888999998778
Q ss_pred CCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEEEeecCCCCCCCeecCCCCCccCCceeeeecC
Q 009715 364 SWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTL 443 (528)
Q Consensus 364 ~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~d~~~~~g~~ 443 (528)
+.|.++.|+| ... ..|++|+.|+.|.|||++++.++..+...-.-..++|+|.. -.+.+++.
T Consensus 188 Dti~svkfNp-------vET-----sILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPea------fnF~~a~E 249 (433)
T KOG0268|consen 188 DSISSVKFNP-------VET-----SILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEA------FNFVAANE 249 (433)
T ss_pred CceeEEecCC-------Ccc-----hheeeeccCCceEEEecccCCccceeeeeccccceecCccc------cceeeccc
Confidence 8899999999 432 68999999999999999999999888776666777887744 34467888
Q ss_pred CCCceeeecCCC-CceEEeecCCCCeEEEEEeCCe--EEEEECCCeEEEEeCCCCccccCCCc---cce--EEEccCCce
Q 009715 444 QPAPSMRDVPKL-SPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWMRPGVAESQSSSS---ETV--LSTSSKDKP 515 (528)
Q Consensus 444 ~~~~~~~d~~~~-~~~~~~~~h~~~V~~l~~s~d~--l~t~s~Dg~i~iW~~~~~~~~~~~~~---~~v--l~~spd~~~ 515 (528)
|-.+..+|++.. .|+..+.+|...|.++.|+|.+ +++||.|.+|||+.+..+.....-|. ..| +.+|.|.+|
T Consensus 250 D~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dsky 329 (433)
T KOG0268|consen 250 DHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKY 329 (433)
T ss_pred cccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccE
Confidence 899999999876 4889999999999999999976 99999999999999987765554333 334 777999999
Q ss_pred EEEeeeeccc
Q 009715 516 LLSSKVVTSS 525 (528)
Q Consensus 516 l~s~~~~gs~ 525 (528)
+++|+.++++
T Consensus 330 i~SGSdd~nv 339 (433)
T KOG0268|consen 330 IISGSDDGNV 339 (433)
T ss_pred EEecCCCcce
Confidence 9999988654
No 81
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.94 E-value=1.7e-25 Score=211.21 Aligned_cols=242 Identities=15% Similarity=0.250 Sum_probs=196.6
Q ss_pred cCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEEC
Q 009715 209 NNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFS 288 (528)
Q Consensus 209 h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 288 (528)
|.+.|+.+.+.|+...++++.+..+.|+|||..+....... .+..+|-.++.+|+..-++++|+
T Consensus 123 h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~----------------~~~~~Pdl~L~gH~~eg~glsWn 186 (422)
T KOG0264|consen 123 HDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKA----------------SGECRPDLRLKGHEKEGYGLSWN 186 (422)
T ss_pred CCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccc----------------cccCCCceEEEeecccccccccc
Confidence 99999999999999988999999999999998763321110 11456778899999999999999
Q ss_pred C-CCCEEEEEeCCCcEEEEecCCce-------EEeeecccCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECC--CCeEEE
Q 009715 289 T-DGTYLATVGRDGYLRVFDYSKEQ-------LICGGKSYYGALLCCAWSM-DGKYILTGGEDDLVQVWSME--DRKVVA 357 (528)
Q Consensus 289 p-dg~~l~s~~~dg~i~vwd~~~~~-------~~~~~~~~~~~v~~l~~sp-~g~~l~sg~~dg~v~vwd~~--~~~~~~ 357 (528)
+ ..-.|++++.|+.|++||+.... ....+.+|...|..++|+| +..+++++++|+.+.|||++ +.++..
T Consensus 187 ~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~ 266 (422)
T KOG0264|consen 187 RQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSH 266 (422)
T ss_pred cccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcc
Confidence 9 55689999999999999997432 3456788999999999999 45678899999999999999 566777
Q ss_pred EeecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEEEeecCCCCCCCeecCCCCCccCCce
Q 009715 358 WGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNV 437 (528)
Q Consensus 358 ~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~d~~ 437 (528)
...+|...|+|++|+|+ ++ .+||+|+.|++|+|||+|.-+
T Consensus 267 ~~~ah~~~vn~~~fnp~------~~------~ilAT~S~D~tV~LwDlRnL~---------------------------- 306 (422)
T KOG0264|consen 267 SVKAHSAEVNCVAFNPF------NE------FILATGSADKTVALWDLRNLN---------------------------- 306 (422)
T ss_pred cccccCCceeEEEeCCC------CC------ceEEeccCCCcEEEeechhcc----------------------------
Confidence 88899999999999996 66 799999999999999998643
Q ss_pred eeeecCCCCceeeecCCCCceEEeecCCCCeEEEEEeCCe---EEEEECCCeEEEEeCCCCcccc-------------C-
Q 009715 438 CPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES---VLTVCREGHIKIWMRPGVAESQ-------------S- 500 (528)
Q Consensus 438 ~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~~s~d~---l~t~s~Dg~i~iW~~~~~~~~~-------------~- 500 (528)
+++..+.+|...|..|.|+|+. |++++.|+.+.|||+..-...+ +
T Consensus 307 ------------------~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~ 368 (422)
T KOG0264|consen 307 ------------------KPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFI 368 (422)
T ss_pred ------------------cCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEE
Confidence 2555778899999999999963 9999999999999986433221 2
Q ss_pred --CCccce--EEEccCCceEE-Eeeeecc
Q 009715 501 --SSSETV--LSTSSKDKPLL-SSKVVTS 524 (528)
Q Consensus 501 --~~~~~v--l~~spd~~~l~-s~~~~gs 524 (528)
+|...| +++.|+...++ |...+++
T Consensus 369 HgGH~~kV~DfsWnp~ePW~I~SvaeDN~ 397 (422)
T KOG0264|consen 369 HGGHTAKVSDFSWNPNEPWTIASVAEDNI 397 (422)
T ss_pred ecCcccccccccCCCCCCeEEEEecCCce
Confidence 566677 77789887765 4444443
No 82
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=6.6e-26 Score=225.89 Aligned_cols=238 Identities=17% Similarity=0.356 Sum_probs=190.4
Q ss_pred CCCCCeEEEEecCCcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCC
Q 009715 165 AKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDG 244 (528)
Q Consensus 165 ~~~~~~l~~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~ 244 (528)
.-+.++|+++..+|.|.+||+......+ .+ ..|+ -|...|+++.|++...++|++|+.||+|++||++...
T Consensus 97 ~~~~NlIAT~s~nG~i~vWdlnk~~rnk--~l---~~f~----EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~ 167 (839)
T KOG0269|consen 97 QLYSNLIATCSTNGVISVWDLNKSIRNK--LL---TVFN----EHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKK 167 (839)
T ss_pred cchhhhheeecCCCcEEEEecCccccch--hh---hHhh----hhccceeeeeeccCCccEEEecCCCceEEEEeeeccc
Confidence 5678899999999999999998621110 00 1222 3999999999999999999999999999999998632
Q ss_pred CCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECC-CCCEEEEEeCCCcEEEEecCCc-eEEeeecccCC
Q 009715 245 AGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST-DGTYLATVGRDGYLRVFDYSKE-QLICGGKSYYG 322 (528)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp-dg~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~ 322 (528)
....+.+....|+.++|+| .+.+++++.+.|.|++||++.. ++..++..|.+
T Consensus 168 --------------------------S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~G 221 (839)
T KOG0269|consen 168 --------------------------SKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNG 221 (839)
T ss_pred --------------------------ccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccC
Confidence 2223333457899999999 7889999999999999999865 45567889999
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe--EEEEeecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEe--CCC
Q 009715 323 ALLCCAWSMDGKYILTGGEDDLVQVWSMEDRK--VVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVG--QDT 398 (528)
Q Consensus 323 ~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~--~~~~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s--~D~ 398 (528)
+|.|+.|+|++.+||+|+.|+.|+|||+.+.+ .+.++. -..+|..|.|-| +-. ++|++++ .|.
T Consensus 222 pV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tIn-Tiapv~rVkWRP-------~~~-----~hLAtcsmv~dt 288 (839)
T KOG0269|consen 222 PVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTIN-TIAPVGRVKWRP-------ARS-----YHLATCSMVVDT 288 (839)
T ss_pred ceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEe-ecceeeeeeecc-------Ccc-----chhhhhhccccc
Confidence 99999999999999999999999999998654 344444 457899999999 442 6888887 688
Q ss_pred eEEEEEccCCeEEEEeecCCCCCCCeecCCCCCccCCceeeeecCCCCceeeecCCCCceEEeecCCCCeEEEEEeC---
Q 009715 399 RLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQ--- 475 (528)
Q Consensus 399 ~i~lwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~~s~--- 475 (528)
.|+|||++..- -|..++..|...++.++|..
T Consensus 289 sV~VWDvrRPY----------------------------------------------IP~~t~~eH~~~vt~i~W~~~d~ 322 (839)
T KOG0269|consen 289 SVHVWDVRRPY----------------------------------------------IPYATFLEHTDSVTGIAWDSGDR 322 (839)
T ss_pred eEEEEeecccc----------------------------------------------ccceeeeccCccccceeccCCCc
Confidence 99999997532 14556678999999999987
Q ss_pred CeEEEEECCCeEEEEeCCCCc
Q 009715 476 ESVLTVCREGHIKIWMRPGVA 496 (528)
Q Consensus 476 d~l~t~s~Dg~i~iW~~~~~~ 496 (528)
+.+.+++.|++|..-.+....
T Consensus 323 ~~l~s~sKD~tv~qh~~knat 343 (839)
T KOG0269|consen 323 INLWSCSKDGTVLQHLFKNAT 343 (839)
T ss_pred eeeEeecCccHHHHhhhhccc
Confidence 359999999998877665443
No 83
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=2.1e-26 Score=210.93 Aligned_cols=278 Identities=14% Similarity=0.208 Sum_probs=219.8
Q ss_pred eccCCCCCCCccccCCcccCCcccCCCCCCcceeeeCCCccEEEEeCCCcEEEEeCCCCCCC----CCCCCeEEEEecCC
Q 009715 103 LGFGGGNGGSKSISGSSRIGSLGASSSSTSMTNTNFDGKGTYIIFNVGDAIFISDLNSQDKD----AKDGHDLLIGLNSG 178 (528)
Q Consensus 103 ~sf~gh~~~v~~v~~s~~~~~~~~s~s~~s~~~~~~~~~g~~~~~~~~~~i~v~~~~~~~~~----~~~~~~l~~g~~~G 178 (528)
.++.||.++|.|++-+|..-..++|++. ||.+.+||......++.+..+... ..+...+++.+.|.
T Consensus 60 ~~L~gHrdGV~~lakhp~~ls~~aSGs~----------DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~~~~~tvgdDK 129 (433)
T KOG0268|consen 60 GSLDGHRDGVSCLAKHPNKLSTVASGSC----------DGEVKIWNLSQRECIRTFKAHEGLVRGICVTQTSFFTVGDDK 129 (433)
T ss_pred hhccccccccchhhcCcchhhhhhcccc----------CceEEEEehhhhhhhheeecccCceeeEEecccceEEecCCc
Confidence 4457999999999999955466677765 899999998887666666665533 34447888888999
Q ss_pred cEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccce
Q 009715 179 DVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQ 258 (528)
Q Consensus 179 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~ 258 (528)
+|+.|-+... +..... ..+.++.|.-+..+. .|+|++.+ |.|||...
T Consensus 130 tvK~wk~~~~-------p~~til-------g~s~~~gIdh~~~~~-~FaTcGe~--i~IWD~~R---------------- 176 (433)
T KOG0268|consen 130 TVKQWKIDGP-------PLHTIL-------GKSVYLGIDHHRKNS-VFATCGEQ--IDIWDEQR---------------- 176 (433)
T ss_pred ceeeeeccCC-------cceeee-------ccccccccccccccc-cccccCce--eeeccccc----------------
Confidence 9999987651 111111 445667777776666 88888864 89999875
Q ss_pred eEEeccCCCCCCCeEEEeecCCCeEEEEECC-CCCEEEEEeCCCcEEEEecCCceEEeeecccCCCeEEEEEcCCCCEEE
Q 009715 259 FSVAHPRYSKSNPIARWHICQGSINSIAFST-DGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYIL 337 (528)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp-dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~ 337 (528)
..|+..+......|.++.|+| ....|++|..|+.|.+||+++..+++... ....-+.|+|+|.+-.++
T Consensus 177 ----------~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~ 245 (433)
T KOG0268|consen 177 ----------DNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFV 245 (433)
T ss_pred ----------CCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceee-eeccccceecCcccccee
Confidence 457777777778999999999 56788888899999999999998887654 345567899999888899
Q ss_pred EEeCCCcEEEEECCC-CeEEEEeecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEEEeec
Q 009715 338 TGGEDDLVQVWSMED-RKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRR 416 (528)
Q Consensus 338 sg~~dg~v~vwd~~~-~~~~~~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~ 416 (528)
++++|..++.||++. ..++....+|.+.|.+|+|+| .| .-|++|+.|.+|+||..+.+.....+..
T Consensus 246 ~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsp-------tG------~EfvsgsyDksIRIf~~~~~~SRdiYht 312 (433)
T KOG0268|consen 246 AANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSP-------TG------QEFVSGSYDKSIRIFPVNHGHSRDIYHT 312 (433)
T ss_pred eccccccceehhhhhhcccchhhcccceeEEEeccCC-------Cc------chhccccccceEEEeecCCCcchhhhhH
Confidence 999999999999988 467888899999999999999 99 7899999999999999887654322211
Q ss_pred CCCCCCCeecCCCCCccCCceeeeecCCCCceeeecCCCCceEEeecCCCCeEEEEEeCC--eEEEEECCCeEEEEeCC
Q 009715 417 GPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE--SVLTVCREGHIKIWMRP 493 (528)
Q Consensus 417 ~~~~~~~~~s~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~~s~d--~l~t~s~Dg~i~iW~~~ 493 (528)
.....|.++.|+.| +|++||.|+.||+|.-.
T Consensus 313 ----------------------------------------------kRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~ 345 (433)
T KOG0268|consen 313 ----------------------------------------------KRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAK 345 (433)
T ss_pred ----------------------------------------------hhhheeeEEEEeccccEEEecCCCcceeeeecc
Confidence 11346899999997 59999999999999853
No 84
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.94 E-value=1.3e-24 Score=191.20 Aligned_cols=278 Identities=18% Similarity=0.271 Sum_probs=220.4
Q ss_pred eccCCCCCCCccccCCcccCCcccCCCCCCcceeeeCCCccEEEEeCCCcEEEEeCC--CCCCC-------CCCCCeEEE
Q 009715 103 LGFGGGNGGSKSISGSSRIGSLGASSSSTSMTNTNFDGKGTYIIFNVGDAIFISDLN--SQDKD-------AKDGHDLLI 173 (528)
Q Consensus 103 ~sf~gh~~~v~~v~~s~~~~~~~~s~s~~s~~~~~~~~~g~~~~~~~~~~i~v~~~~--~~~~~-------~~~~~~l~~ 173 (528)
+.+.+|.+.+.+|+++. +|.-+++++. +....+|+..+.-+..++. .+... .+....+++
T Consensus 14 r~~~~~~~~v~Sv~wn~-~g~~lasgs~----------dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~at 82 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNC-DGTKLASGSF----------DKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFAT 82 (313)
T ss_pred HHhhhhhhcceEEEEcc-cCceeeeccc----------CCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEE
Confidence 56789999999999998 7777777775 6777777776653333332 22211 566778899
Q ss_pred EecCCcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccccc
Q 009715 174 GLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVI 253 (528)
Q Consensus 174 g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~ 253 (528)
++.+..|++||+++ ++.... .. ....=.-+.|+|+|. +++++..|..|...|.++...... .+
T Consensus 83 as~dk~ir~wd~r~-----~k~~~~---i~-----~~~eni~i~wsp~g~-~~~~~~kdD~it~id~r~~~~~~~-~~-- 145 (313)
T KOG1407|consen 83 ASGDKTIRIWDIRS-----GKCTAR---IE-----TKGENINITWSPDGE-YIAVGNKDDRITFIDARTYKIVNE-EQ-- 145 (313)
T ss_pred ecCCceEEEEEecc-----CcEEEE---ee-----ccCcceEEEEcCCCC-EEEEecCcccEEEEEecccceeeh-hc--
Confidence 99999999999997 222211 11 223344589999999 999999999999999876321110 00
Q ss_pred cccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCCCCEEEEEeCCCcEEEEecCCceEEeeecccCCCeEEEEEcCCC
Q 009715 254 KDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDG 333 (528)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~g 333 (528)
....++.+.|+.++.+++.....|.|.|.....-+++..++.|.....||.|+|+|
T Consensus 146 ------------------------~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~G 201 (313)
T KOG1407|consen 146 ------------------------FKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDG 201 (313)
T ss_pred ------------------------ccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCC
Confidence 12467789999888888888888999999999999999999999999999999999
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEeecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEEE
Q 009715 334 KYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVP 413 (528)
Q Consensus 334 ~~l~sg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~ 413 (528)
+|||+|+.|-.+-+||++.--|++.+..+.-+|..+.|+- || ++|+++++|..|-|=++.+|..+..
T Consensus 202 ryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~-------dg------~~lASaSEDh~IDIA~vetGd~~~e 268 (313)
T KOG1407|consen 202 RYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSH-------DG------RMLASASEDHFIDIAEVETGDRVWE 268 (313)
T ss_pred ceEeeccccceeeccChhHhhhheeeccccCceEEEEecc-------Cc------ceeeccCccceEEeEecccCCeEEE
Confidence 9999999999999999999999999999999999999998 99 8999999999999999999887766
Q ss_pred eecCCCCCCCeecCCCCCccCCceeeeecCCCCceeeecCCCCceEEeecCCCCeEEEEEeCCe--EEEEECC-------
Q 009715 414 LRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCRE------- 484 (528)
Q Consensus 414 ~~~~~~~~~~~~s~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~~s~d~--l~t~s~D------- 484 (528)
+. +.++...|+|+|.. |+-++.|
T Consensus 269 I~------------------------------------------------~~~~t~tVAWHPk~~LLAyA~ddk~~d~~r 300 (313)
T KOG1407|consen 269 IP------------------------------------------------CEGPTFTVAWHPKRPLLAYACDDKDGDSNR 300 (313)
T ss_pred ee------------------------------------------------ccCCceeEEecCCCceeeEEecCCCCcccc
Confidence 54 46778899999975 6666655
Q ss_pred --CeEEEEeCC
Q 009715 485 --GHIKIWMRP 493 (528)
Q Consensus 485 --g~i~iW~~~ 493 (528)
|+||++-++
T Consensus 301 eag~vKiFG~~ 311 (313)
T KOG1407|consen 301 EAGTVKIFGLS 311 (313)
T ss_pred ccceeEEecCC
Confidence 566666554
No 85
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.94 E-value=3.7e-25 Score=229.06 Aligned_cols=308 Identities=13% Similarity=0.178 Sum_probs=232.2
Q ss_pred CCCCeEEEEe--cCCcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCC
Q 009715 166 KDGHDLLIGL--NSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKD 243 (528)
Q Consensus 166 ~~~~~l~~g~--~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~ 243 (528)
|++..+++|+ .||.+.||+...-.......-.........-..|.+.|+|+.|+|||+ +||+|+.|+.|.||+...
T Consensus 23 pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~-~lAsGSDD~~v~iW~~~~- 100 (942)
T KOG0973|consen 23 PDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGS-YLASGSDDRLVMIWERAE- 100 (942)
T ss_pred CCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCC-eEeeccCcceEEEeeecc-
Confidence 9999999999 899999999765321111111100001111123999999999999999 999999999999999874
Q ss_pred CCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCCCCEEEEEeCCCcEEEEecCCceEEeeecccCCC
Q 009715 244 GAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGA 323 (528)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~ 323 (528)
......+.... ....-.+.+.+..+.+|.+.|..++|+|++.+|++++.|+.|.|||..+.+.+..+++|.+.
T Consensus 101 ~~~~~~fgs~g-------~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~ 173 (942)
T KOG0973|consen 101 IGSGTVFGSTG-------GAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSL 173 (942)
T ss_pred cCCcccccccc-------cccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeeccccc
Confidence 11111111000 01112346678888999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCC------CCeEEEEEecCCCCCCCCCCccceeEEEEEEe--
Q 009715 324 LLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHN------SWVSGVAFDSYWSQPNSDGTAETVMYRFGSVG-- 395 (528)
Q Consensus 324 v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~~~~~~~~h~------~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s-- 395 (528)
|..+.|.|-|+|||+-+.|++|+||++.+....+.+.++- ....-+.|+| || .+|++.-
T Consensus 174 VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSP-------DG------~~las~nA~ 240 (942)
T KOG0973|consen 174 VKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSP-------DG------HHLASPNAV 240 (942)
T ss_pred ccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCC-------Cc------Ceecchhhc
Confidence 9999999999999999999999999988766666665432 3567889999 99 6777763
Q ss_pred --CCCeEEEEEccCCeEEEEeecC-CCCCCCeecCCCC--------CccCC---ceeeeecCCCCceeeecCCCCceEEe
Q 009715 396 --QDTRLLLWDLEMDEIVVPLRRG-PLGGSPTFSTGSQ--------SAHWD---NVCPVGTLQPAPSMRDVPKLSPLVAH 461 (528)
Q Consensus 396 --~D~~i~lwd~~~~~~~~~~~~~-~~~~~~~~s~~~~--------~~~~d---~~~~~g~~~~~~~~~d~~~~~~~~~~ 461 (528)
.-.++.|.+-.+-+.-..+..+ .+...+.|++.-. ....+ ..+++|+.|..+.+|.....+|+...
T Consensus 241 n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi 320 (942)
T KOG0973|consen 241 NGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVI 320 (942)
T ss_pred cCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhh
Confidence 3346777776666655555433 4566667765321 11111 35699999999999999888887655
Q ss_pred e-cCCCCeEEEEEeCCe--EEEEECCCeEEEEeCCCC
Q 009715 462 R-VHTEPLSGLIFTQES--VLTVCREGHIKIWMRPGV 495 (528)
Q Consensus 462 ~-~h~~~V~~l~~s~d~--l~t~s~Dg~i~iW~~~~~ 495 (528)
. .....|.++.|+||+ |+.||.||+|.+..++..
T Consensus 321 ~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 321 HNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred hhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence 3 456789999999997 999999999999998653
No 86
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=6e-25 Score=207.34 Aligned_cols=278 Identities=15% Similarity=0.177 Sum_probs=218.6
Q ss_pred CCCCCeEEEEecCCcEEEEEcccccccccccee---eeeeecc--CC-cccCCceeEEEEeeCCCcEEEEEeCCceEEEE
Q 009715 165 AKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLV---GAHHYNK--DG-SVNNSRCTSVTWVPGGDGAFVVGHADGNLYVY 238 (528)
Q Consensus 165 ~~~~~~l~~g~~~G~v~iwd~~~~~~~~~~~~~---~~~~~~~--~~-~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vw 238 (528)
++++.+.+.++.+|.|.-|++.+.......... ...++.+ .. ..|...+.+++.++||+ +|++|+.|..|.||
T Consensus 151 s~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk-ylatgg~d~~v~Iw 229 (479)
T KOG0299|consen 151 SPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK-YLATGGRDRHVQIW 229 (479)
T ss_pred eccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc-EEEecCCCceEEEe
Confidence 688899999999999999998774321000000 0001111 11 36999999999999999 99999999999999
Q ss_pred EcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCCCCEEEEEeCCCcEEEEecCCceEEeeec
Q 009715 239 EKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGK 318 (528)
Q Consensus 239 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~~~dg~i~vwd~~~~~~~~~~~ 318 (528)
+.++ .++++.|.+|.+.|.+++|-.....|++++.|+.|++|+++....+.++.
T Consensus 230 ~~~t--------------------------~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetly 283 (479)
T KOG0299|consen 230 DCDT--------------------------LEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLY 283 (479)
T ss_pred cCcc--------------------------cchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHh
Confidence 9986 46778899999999999999888899999999999999999999999999
Q ss_pred ccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCC
Q 009715 319 SYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDT 398 (528)
Q Consensus 319 ~~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~ 398 (528)
+|.+.|..|.....++.+-+|+.|.++++|++.. +....+.+|.+.+-|++|-. +. .|++|+.||
T Consensus 284 GHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~e-esqlifrg~~~sidcv~~In-------~~-------HfvsGSdnG 348 (479)
T KOG0299|consen 284 GHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPE-ESQLIFRGGEGSIDCVAFIN-------DE-------HFVSGSDNG 348 (479)
T ss_pred CCccceeeechhcccceEEeccccceeEEEeccc-cceeeeeCCCCCeeeEEEec-------cc-------ceeeccCCc
Confidence 9999999999888888777888999999999943 33445678999999999975 43 899999999
Q ss_pred eEEEEEccCCeEEEEeecCCCCCCCeecCCCCCccCCceeeeecCCCCceeeecCCCCceEEeecCCCCeEEEEEeC--C
Q 009715 399 RLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQ--E 476 (528)
Q Consensus 399 ~i~lwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~~s~--d 476 (528)
.|.+|++.+.+++......+.+.... .+ ..+...|++|+..| |
T Consensus 349 ~IaLWs~~KKkplf~~~~AHgv~~~~-------------------------------~~----~~~~~Witsla~i~~sd 393 (479)
T KOG0299|consen 349 SIALWSLLKKKPLFTSRLAHGVIPEL-------------------------------DP----VNGNFWITSLAVIPGSD 393 (479)
T ss_pred eEEEeeecccCceeEeeccccccCCc-------------------------------cc----cccccceeeeEecccCc
Confidence 99999999999887765422211000 00 12335789999988 5
Q ss_pred eEEEEECCCeEEEEeCCCCcccc-----CCCccce--EEEccCCceEEEe
Q 009715 477 SVLTVCREGHIKIWMRPGVAESQ-----SSSSETV--LSTSSKDKPLLSS 519 (528)
Q Consensus 477 ~l~t~s~Dg~i~iW~~~~~~~~~-----~~~~~~v--l~~spd~~~l~s~ 519 (528)
.+++|+.+|.||+|.+..+.... ....+-| ++|+++|++|++|
T Consensus 394 L~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivag 443 (479)
T KOG0299|consen 394 LLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAG 443 (479)
T ss_pred eEEecCCCCceEEEEecCCccccceeeecccccEEEEEEEccCCCEEEEe
Confidence 69999999999999998874211 1334445 8889999988877
No 87
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.94 E-value=8.9e-26 Score=197.06 Aligned_cols=269 Identities=15% Similarity=0.141 Sum_probs=231.6
Q ss_pred ccCCceeEEEEee---CCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEE
Q 009715 208 VNNSRCTSVTWVP---GGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINS 284 (528)
Q Consensus 208 ~h~~~v~~l~~~p---~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 284 (528)
+|..+|..++|+| +|- +|++++.||.-.+-+-++ ..=+-.+.+|.+.|.+
T Consensus 12 ghtrpvvdl~~s~itp~g~-flisa~kd~~pmlr~g~t--------------------------gdwigtfeghkgavw~ 64 (334)
T KOG0278|consen 12 GHTRPVVDLAFSPITPDGY-FLISASKDGKPMLRNGDT--------------------------GDWIGTFEGHKGAVWS 64 (334)
T ss_pred CCCcceeEEeccCCCCCce-EEEEeccCCCchhccCCC--------------------------CCcEEeeeccCcceee
Confidence 3999999999985 666 899999998876655443 3457788999999999
Q ss_pred EEECCCCCEEEEEeCCCcEEEEecCCceEEeeecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC-eEEEEeecCC
Q 009715 285 IAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDR-KVVAWGEGHN 363 (528)
Q Consensus 285 l~~spdg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~-~~~~~~~~h~ 363 (528)
..++.+-...|+++.|-+-++||.-+|..+..+. |.-.|..++|+.|.++|++|+.+..++|||++.. .+...+.+|.
T Consensus 65 ~~l~~na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ght 143 (334)
T KOG0278|consen 65 ATLNKNATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHT 143 (334)
T ss_pred eecCchhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCC
Confidence 9999988889999999999999999999998886 8889999999999999999999999999999875 4567788999
Q ss_pred CCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEEEeecCCCCCCCeecCCCCCccCCceeeeecC
Q 009715 364 SWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTL 443 (528)
Q Consensus 364 ~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~d~~~~~g~~ 443 (528)
+.|..+.|+. .. +.|++...|++||+||.++++.++.+....++.++.++.++. +.+-..
T Consensus 144 g~Ir~v~wc~-------eD------~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~-------ilTia~ 203 (334)
T KOG0278|consen 144 GGIRTVLWCH-------ED------KCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGR-------ILTIAY 203 (334)
T ss_pred CcceeEEEec-------cC------ceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCC-------EEEEec
Confidence 9999999987 44 588888999999999999999999999989999999988873 334445
Q ss_pred CCCceeeecCCCCceEEeecCCCCeEEEEEeCC--eEEEEECCCeEEEEeCCCCcccc---CCCccce--EEEccCCceE
Q 009715 444 QPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE--SVLTVCREGHIKIWMRPGVAESQ---SSSSETV--LSTSSKDKPL 516 (528)
Q Consensus 444 ~~~~~~~d~~~~~~~~~~~~h~~~V~~l~~s~d--~l~t~s~Dg~i~iW~~~~~~~~~---~~~~~~v--l~~spd~~~l 516 (528)
...+..||...+.++..+... ..|.+...+|+ .+++|+.|..++.+|+.++.+.. .+|.+.| +.|+|||..-
T Consensus 204 gssV~Fwdaksf~~lKs~k~P-~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~y 282 (334)
T KOG0278|consen 204 GSSVKFWDAKSFGLLKSYKMP-CNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELY 282 (334)
T ss_pred CceeEEeccccccceeeccCc-cccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCcee
Confidence 567889999999888877654 45888999997 48999999999999999887554 4688888 8889999999
Q ss_pred EEeeeeccc
Q 009715 517 LSSKVVTSS 525 (528)
Q Consensus 517 ~s~~~~gs~ 525 (528)
++|+.+|++
T Consensus 283 AsGSEDGTi 291 (334)
T KOG0278|consen 283 ASGSEDGTI 291 (334)
T ss_pred eccCCCceE
Confidence 999999875
No 88
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=2.2e-23 Score=179.54 Aligned_cols=288 Identities=18% Similarity=0.283 Sum_probs=222.9
Q ss_pred CCCCCeEEEEecCCcEEEEEcccc--cccccccee-eeeeeccCCcccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcC
Q 009715 165 AKDGHDLLIGLNSGDVYSVSLRQQ--LQDVGKKLV-GAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKS 241 (528)
Q Consensus 165 ~~~~~~l~~g~~~G~v~iwd~~~~--~~~~~~~~~-~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~ 241 (528)
+|.|...++|++..+++|.-.... ++...+... +....-+....|.+.|.|.+|+|.|+ ++++|+.|.+|++..++
T Consensus 41 hp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~ge-liatgsndk~ik~l~fn 119 (350)
T KOG0641|consen 41 HPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGE-LIATGSNDKTIKVLPFN 119 (350)
T ss_pred cCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccC-eEEecCCCceEEEEecc
Confidence 589999999999998887644321 101111110 00112223345999999999999999 99999999999998876
Q ss_pred CCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCC----CCEEEEEe-CCCcEEEEecCCceEEee
Q 009715 242 KDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTD----GTYLATVG-RDGYLRVFDYSKEQLICG 316 (528)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spd----g~~l~s~~-~dg~i~vwd~~~~~~~~~ 316 (528)
.+... ...+-..+..|.+.|..++|-.+ +..|++++ .|..|++-|..+|+..+.
T Consensus 120 ~dt~~---------------------~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a 178 (350)
T KOG0641|consen 120 ADTCN---------------------ATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHA 178 (350)
T ss_pred ccccc---------------------ccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCccee
Confidence 53210 12344567789999999999753 55677765 567788888899999999
Q ss_pred ecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeec--C-----CCCeEEEEEecCCCCCCCCCCccceeE
Q 009715 317 GKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEG--H-----NSWVSGVAFDSYWSQPNSDGTAETVMY 389 (528)
Q Consensus 317 ~~~~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~~~~~~~~--h-----~~~V~~v~f~p~~~~~~~dg~~~~~~~ 389 (528)
+.+|.+-|..+ ++=++-++++|+.|.+|++||++-..++.++.. | .+.|.+|+.+| .| +
T Consensus 179 ~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdp-------sg------r 244 (350)
T KOG0641|consen 179 LSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDP-------SG------R 244 (350)
T ss_pred ecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECC-------Cc------c
Confidence 99999999877 233578999999999999999999888887752 2 35799999999 99 8
Q ss_pred EEEEEeCCCeEEEEEccCCeEEEEeec-CCCCCCCeecCCCCCccCCceeeeecCCCCceeeecCC----CCceEEeecC
Q 009715 390 RFGSVGQDTRLLLWDLEMDEIVVPLRR-GPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPK----LSPLVAHRVH 464 (528)
Q Consensus 390 ~l~s~s~D~~i~lwd~~~~~~~~~~~~-~~~~~~~~~s~~~~~~~~d~~~~~g~~~~~~~~~d~~~----~~~~~~~~~h 464 (528)
+|++|-.|....+||++.++.++.+.. ...+.++.|+++. ..+.+++.+..+++-|++. .-++.....|
T Consensus 245 ll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a------~yllt~syd~~ikltdlqgdla~el~~~vv~eh 318 (350)
T KOG0641|consen 245 LLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGA------HYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEH 318 (350)
T ss_pred eeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCc------eEEEEecccceEEEeecccchhhcCceEEEEec
Confidence 999999999999999999999998864 3567889999886 4556777777777777653 3466777789
Q ss_pred CCCeEEEEEeCC--eEEEEECCCeEEEEeCCC
Q 009715 465 TEPLSGLIFTQE--SVLTVCREGHIKIWMRPG 494 (528)
Q Consensus 465 ~~~V~~l~~s~d--~l~t~s~Dg~i~iW~~~~ 494 (528)
.+.+..+.|+|. .+++.+.|.++.+|.+++
T Consensus 319 kdk~i~~rwh~~d~sfisssadkt~tlwa~~~ 350 (350)
T KOG0641|consen 319 KDKAIQCRWHPQDFSFISSSADKTATLWALNG 350 (350)
T ss_pred cCceEEEEecCccceeeeccCcceEEEeccCC
Confidence 999999999995 399999999999998753
No 89
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.4e-23 Score=180.67 Aligned_cols=279 Identities=17% Similarity=0.199 Sum_probs=209.5
Q ss_pred cCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEEC
Q 009715 209 NNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFS 288 (528)
Q Consensus 209 h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 288 (528)
....|.+++|+|.|. +.++|+...+++|-....--... ..++... ....-..++-+.|.+.|+|.+|+
T Consensus 31 dsqairav~fhp~g~-lyavgsnskt~ric~yp~l~~~r---~~hea~~--------~pp~v~~kr~khhkgsiyc~~ws 98 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAGG-LYAVGSNSKTFRICAYPALIDLR---HAHEAAK--------QPPSVLCKRNKHHKGSIYCTAWS 98 (350)
T ss_pred chhheeeEEecCCCc-eEEeccCCceEEEEccccccCcc---ccccccc--------CCCeEEeeeccccCccEEEEEec
Confidence 456899999999999 99999999999987653211000 0000000 00011223345688999999999
Q ss_pred CCCCEEEEEeCCCcEEEEecCCceEE-----eeecccCCCeEEEEEcCC----CCEEEEEeC-CCcEEEEECCCCeEEEE
Q 009715 289 TDGTYLATVGRDGYLRVFDYSKEQLI-----CGGKSYYGALLCCAWSMD----GKYILTGGE-DDLVQVWSMEDRKVVAW 358 (528)
Q Consensus 289 pdg~~l~s~~~dg~i~vwd~~~~~~~-----~~~~~~~~~v~~l~~sp~----g~~l~sg~~-dg~v~vwd~~~~~~~~~ 358 (528)
|+|.+|++|+.|++|++.-++...+. ..+.-|.+.|..++|-.+ +.+|++++. |..|++-|...++..+.
T Consensus 99 ~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a 178 (350)
T KOG0641|consen 99 PCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHA 178 (350)
T ss_pred CccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCccee
Confidence 99999999999999999877644332 234568999999999653 457777653 77888889999999999
Q ss_pred eecCCCCeEEE-EEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEEEeecCCCC--------CCCeecCCC
Q 009715 359 GEGHNSWVSGV-AFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLG--------GSPTFSTGS 429 (528)
Q Consensus 359 ~~~h~~~V~~v-~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~--------~~~~~s~~~ 429 (528)
+.+|.+.|.++ .| +| .++++|++|.+|++||++-..++..+...... ..+++.+.+
T Consensus 179 ~sghtghilalysw---------n~------~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsg 243 (350)
T KOG0641|consen 179 LSGHTGHILALYSW---------NG------AMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSG 243 (350)
T ss_pred ecCCcccEEEEEEe---------cC------cEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCc
Confidence 99999999887 44 45 69999999999999999999999888654222 233344444
Q ss_pred CCccCCceeeeecCCCCceeeecCCCCceEEeecCCCCeEEEEEeCC--eEEEEECCCeEEEEeCCCCcccc------CC
Q 009715 430 QSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE--SVLTVCREGHIKIWMRPGVAESQ------SS 501 (528)
Q Consensus 430 ~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~~s~d--~l~t~s~Dg~i~iW~~~~~~~~~------~~ 501 (528)
..+..|..+....+||++..++++.+..|...|.++.|+|. +++|++.|..|++=|+++....+ ..
T Consensus 244 ------rll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~e 317 (350)
T KOG0641|consen 244 ------RLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAE 317 (350)
T ss_pred ------ceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEe
Confidence 55678888899999999999999999999999999999995 69999999999999998865222 24
Q ss_pred Cccce--EEEccCCceEEEee
Q 009715 502 SSETV--LSTSSKDKPLLSSK 520 (528)
Q Consensus 502 ~~~~v--l~~spd~~~l~s~~ 520 (528)
|.+.+ ..|.|.+=-+++++
T Consensus 318 hkdk~i~~rwh~~d~sfisss 338 (350)
T KOG0641|consen 318 HKDKAIQCRWHPQDFSFISSS 338 (350)
T ss_pred ccCceEEEEecCccceeeecc
Confidence 66655 66677665444443
No 90
>PTZ00420 coronin; Provisional
Probab=99.93 E-value=5.8e-24 Score=218.29 Aligned_cols=233 Identities=11% Similarity=0.109 Sum_probs=165.8
Q ss_pred hhhhhhhcCCCCCceeeccCCCCCCCccccCCcccCCcccCCCCCCcceeeeCCCccEEEEeCCCcEEEEeCCCCCCCCC
Q 009715 87 RSAAAKLLGTGNGSRTLGFGGGNGGSKSISGSSRIGSLGASSSSTSMTNTNFDGKGTYIIFNVGDAIFISDLNSQDKDAK 166 (528)
Q Consensus 87 ~~~~~~~~~~~~g~~~~sf~gh~~~v~~v~~s~~~~~~~~s~s~~s~~~~~~~~~g~~~~~~~~~~i~v~~~~~~~~~~~ 166 (528)
..+..++|.......+..|.||.+.|.+++|+| .
T Consensus 52 ~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP----------------------------------------------~ 85 (568)
T PTZ00420 52 LIGAIRLENQMRKPPVIKLKGHTSSILDLQFNP----------------------------------------------C 85 (568)
T ss_pred ceeEEEeeecCCCceEEEEcCCCCCEEEEEEcC----------------------------------------------C
Confidence 345566776666666667777777777777766 1
Q ss_pred CCCeEEEEecCCcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCC
Q 009715 167 DGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAG 246 (528)
Q Consensus 167 ~~~~l~~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~ 246 (528)
+++.|++|+.||.|++||+....... ..... .......|...|.+++|+|++.++|++++.|++|+|||+++..
T Consensus 86 ~~~lLASgS~DgtIrIWDi~t~~~~~-~~i~~---p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~-- 159 (568)
T PTZ00420 86 FSEILASGSEDLTIRVWEIPHNDESV-KEIKD---PQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEK-- 159 (568)
T ss_pred CCCEEEEEeCCCeEEEEECCCCCccc-ccccc---ceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCc--
Confidence 24567788888888888886421000 00000 0001224889999999999998567899999999999998621
Q ss_pred CCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCCCCEEEEEeCCCcEEEEecCCceEEeeecccCCCeEE
Q 009715 247 DSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLC 326 (528)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~ 326 (528)
.+..+. |...|.+++|+|+|.+|++++.|+.|+|||+++++.+..+.+|.+.+..
T Consensus 160 ------------------------~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s 214 (568)
T PTZ00420 160 ------------------------RAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNT 214 (568)
T ss_pred ------------------------EEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCcee
Confidence 122222 4468999999999999999999999999999999999989999876543
Q ss_pred -----EEEcCCCCEEEEEeCCC----cEEEEECCC-CeEEEEeecCCCCeEE--EEEecCCCCCCCCCCccceeEEEEEE
Q 009715 327 -----CAWSMDGKYILTGGEDD----LVQVWSMED-RKVVAWGEGHNSWVSG--VAFDSYWSQPNSDGTAETVMYRFGSV 394 (528)
Q Consensus 327 -----l~~sp~g~~l~sg~~dg----~v~vwd~~~-~~~~~~~~~h~~~V~~--v~f~p~~~~~~~dg~~~~~~~~l~s~ 394 (528)
..|++++.+|++++.|+ .|+|||++. .+++..+. +...... ..|++. +| .++++|
T Consensus 215 ~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~-ld~~~~~L~p~~D~~------tg------~l~lsG 281 (568)
T PTZ00420 215 KNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMS-IDNASAPLIPHYDES------TG------LIYLIG 281 (568)
T ss_pred EEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEE-ecCCccceEEeeeCC------CC------CEEEEE
Confidence 23458999999987764 799999995 56665554 3222222 233330 56 688999
Q ss_pred eCCCeEEEEEccCCe
Q 009715 395 GQDTRLLLWDLEMDE 409 (528)
Q Consensus 395 s~D~~i~lwd~~~~~ 409 (528)
+.|+.|++|++..+.
T Consensus 282 kGD~tIr~~e~~~~~ 296 (568)
T PTZ00420 282 KGDGNCRYYQHSLGS 296 (568)
T ss_pred ECCCeEEEEEccCCc
Confidence 999999999998764
No 91
>PTZ00421 coronin; Provisional
Probab=99.93 E-value=3.7e-23 Score=211.40 Aligned_cols=221 Identities=13% Similarity=0.165 Sum_probs=167.4
Q ss_pred CC-CCCeEEEEecCCcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCC
Q 009715 165 AK-DGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKD 243 (528)
Q Consensus 165 ~~-~~~~l~~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~ 243 (528)
+| +++.|++|+.||.|++||+...... ..... .......|...|.+++|+|++.++|++++.|++|+|||+.+.
T Consensus 84 sP~d~~~LaSgS~DgtIkIWdi~~~~~~--~~~~~---~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg 158 (493)
T PTZ00421 84 NPFDPQKLFTASEDGTIMGWGIPEEGLT--QNISD---PIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERG 158 (493)
T ss_pred cCCCCCEEEEEeCCCEEEEEecCCCccc--cccCc---ceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCC
Confidence 56 7889999999999999999752110 00000 001123499999999999987559999999999999999752
Q ss_pred CCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCCCCEEEEEeCCCcEEEEecCCceEEeeecccCCC
Q 009715 244 GAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGA 323 (528)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~ 323 (528)
..+..+..|...|.+++|+|++.+|++++.|+.|++||+++++.+..+..|.+.
T Consensus 159 --------------------------~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~ 212 (493)
T PTZ00421 159 --------------------------KAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASA 212 (493)
T ss_pred --------------------------eEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCC
Confidence 345566778899999999999999999999999999999999998888888764
Q ss_pred -eEEEEEcCCCCEEEEEe----CCCcEEEEECCCCe-EEEEeecC-CCCeEEEEEecCCCCCCCCCCccceeEEEEEEe-
Q 009715 324 -LLCCAWSMDGKYILTGG----EDDLVQVWSMEDRK-VVAWGEGH-NSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVG- 395 (528)
Q Consensus 324 -v~~l~~sp~g~~l~sg~----~dg~v~vwd~~~~~-~~~~~~~h-~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s- 395 (528)
+..+.|.+++..+++++ .|+.|++||+++.. ++.....+ ...+....|++ |+ .+|++++
T Consensus 213 ~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~-------d~------~~L~lggk 279 (493)
T PTZ00421 213 KSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDE-------DT------NLLYIGSK 279 (493)
T ss_pred cceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcC-------CC------CEEEEEEe
Confidence 45678999888777654 47899999998753 44444333 34566667888 88 5777776
Q ss_pred CCCeEEEEEccCCeEEEEeecC--CCCCCCeecCCC
Q 009715 396 QDTRLLLWDLEMDEIVVPLRRG--PLGGSPTFSTGS 429 (528)
Q Consensus 396 ~D~~i~lwd~~~~~~~~~~~~~--~~~~~~~~s~~~ 429 (528)
.|+.|++||+..++.+...... .+...++|.+..
T Consensus 280 gDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk~ 315 (493)
T PTZ00421 280 GEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPKW 315 (493)
T ss_pred CCCeEEEEEeeCCceEEEeeccCCCCCcceEecccc
Confidence 5999999999999877665432 344555565543
No 92
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.93 E-value=1.5e-23 Score=184.96 Aligned_cols=269 Identities=13% Similarity=0.119 Sum_probs=221.0
Q ss_pred ccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEE
Q 009715 208 VNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAF 287 (528)
Q Consensus 208 ~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 287 (528)
+|..+++.++++.+|+ +|++++.|.++.||--.. .+.+-.+.+|++.|.|++.
T Consensus 8 GHERplTqiKyN~eGD-LlFscaKD~~~~vw~s~n--------------------------GerlGty~GHtGavW~~Di 60 (327)
T KOG0643|consen 8 GHERPLTQIKYNREGD-LLFSCAKDSTPTVWYSLN--------------------------GERLGTYDGHTGAVWCCDI 60 (327)
T ss_pred cCccccceEEecCCCc-EEEEecCCCCceEEEecC--------------------------CceeeeecCCCceEEEEEe
Confidence 3999999999999999 999999999999998643 3567889999999999999
Q ss_pred CCCCCEEEEEeCCCcEEEEecCCceEEeeecccCCCeEEEEEcCCCCEEEEEeC-----CCcEEEEECC-------CCeE
Q 009715 288 STDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGE-----DDLVQVWSME-------DRKV 355 (528)
Q Consensus 288 spdg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~sg~~-----dg~v~vwd~~-------~~~~ 355 (528)
+.+.+++++|+.|.++++||+++|+.+..++ ...+|..+.|+++|.+++...+ .+.|.++|++ ..++
T Consensus 61 d~~s~~liTGSAD~t~kLWDv~tGk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep 139 (327)
T KOG0643|consen 61 DWDSKHLITGSADQTAKLWDVETGKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEP 139 (327)
T ss_pred cCCcceeeeccccceeEEEEcCCCcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCc
Confidence 9999999999999999999999999999887 5788999999999998887654 3579999998 4567
Q ss_pred EEEeecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEEEe--ecCCCCCCCeecCCCCCcc
Q 009715 356 VAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPL--RRGPLGGSPTFSTGSQSAH 433 (528)
Q Consensus 356 ~~~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~--~~~~~~~~~~~s~~~~~~~ 433 (528)
+..+..+.+.++.+-|.| -+ ..|++|.+||.|.+||+++++....- .+...+..+.++++.
T Consensus 140 ~~kI~t~~skit~a~Wg~-------l~------~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~---- 202 (327)
T KOG0643|consen 140 YLKIPTPDSKITSALWGP-------LG------ETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDR---- 202 (327)
T ss_pred eEEecCCccceeeeeecc-------cC------CEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCc----
Confidence 888888999999999999 77 69999999999999999998655443 234577888888886
Q ss_pred CCceeeeecCCCCceeeecCCCCceEEeecCCCCeEEEEEeC--CeEEEEECCCe--EEEEeCCCCc-------------
Q 009715 434 WDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQ--ESVLTVCREGH--IKIWMRPGVA------------- 496 (528)
Q Consensus 434 ~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~~s~--d~l~t~s~Dg~--i~iW~~~~~~------------- 496 (528)
..+.+++.+....++|+.+.+.+.++. -..+|++.+++| |.++.++.... |.-=.-..++
T Consensus 203 --T~FiT~s~Dttakl~D~~tl~v~Kty~-te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEE 279 (327)
T KOG0643|consen 203 --TYFITGSKDTTAKLVDVRTLEVLKTYT-TERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEE 279 (327)
T ss_pred --ceEEecccCccceeeeccceeeEEEee-ecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHH
Confidence 667889999999999999999888886 367999999999 44555543221 2221211121
Q ss_pred -cccCCCccce--EEEccCCceEEEeeeecc
Q 009715 497 -ESQSSSSETV--LSTSSKDKPLLSSKVVTS 524 (528)
Q Consensus 497 -~~~~~~~~~v--l~~spd~~~l~s~~~~gs 524 (528)
-...+|-++| ++|+|||+--+||+.+|-
T Consensus 280 igrvkGHFGPINsvAfhPdGksYsSGGEDG~ 310 (327)
T KOG0643|consen 280 IGRVKGHFGPINSVAFHPDGKSYSSGGEDGY 310 (327)
T ss_pred hccccccccCcceeEECCCCcccccCCCCce
Confidence 1223677888 999999999999998874
No 93
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.93 E-value=9.2e-26 Score=209.97 Aligned_cols=268 Identities=15% Similarity=0.196 Sum_probs=224.2
Q ss_pred ccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEE
Q 009715 208 VNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAF 287 (528)
Q Consensus 208 ~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 287 (528)
.|.+.|..+.|-++.. .|++|+.|..|++|++..+. ...+..+.+..+.|++++|
T Consensus 173 ~h~gev~~v~~l~~sd-tlatgg~Dr~Ik~W~v~~~k------------------------~~~~~tLaGs~g~it~~d~ 227 (459)
T KOG0288|consen 173 AHEGEVHDVEFLRNSD-TLATGGSDRIIKLWNVLGEK------------------------SELISTLAGSLGNITSIDF 227 (459)
T ss_pred ccccccceeEEccCcc-hhhhcchhhhhhhhhcccch------------------------hhhhhhhhccCCCcceeee
Confidence 3999999999999977 89999999999999987422 2334445555688999999
Q ss_pred CCCCCEEEEEeCCCcEEEEecCCceEEeeecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCeE
Q 009715 288 STDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVS 367 (528)
Q Consensus 288 spdg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~~~~~~~~h~~~V~ 367 (528)
.++++++++++.|+.+++|++...+...++.+|.+.|+++.|......+++|+.|.+|++||+....|..++. ..+.+.
T Consensus 228 d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cn 306 (459)
T KOG0288|consen 228 DSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCN 306 (459)
T ss_pred cCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccc-cccccc
Confidence 9999999999999999999999999999999999999999998877669999999999999999998888776 456677
Q ss_pred EEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEEEeecCCCCCCCeecCCCCCccCCceeeeecCCCCc
Q 009715 368 GVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAP 447 (528)
Q Consensus 368 ~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~d~~~~~g~~~~~~ 447 (528)
+|+..+ ..++++..|++|++||++...+...+..+..+.++..+.++ ..+...+-+..+
T Consensus 307 DI~~~~---------------~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g------~~lLsssRDdtl 365 (459)
T KOG0288|consen 307 DIVCSI---------------SDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDG------LELLSSSRDDTL 365 (459)
T ss_pred ceEecc---------------eeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCC------eEEeeecCCCce
Confidence 787765 57999999999999999999999999988888888888887 444555677788
Q ss_pred eeeecCCCCceEEeecC----CCCeEEEEEeCC--eEEEEECCCeEEEEeCCCCccccC---CCcc-ce--EEEccCCce
Q 009715 448 SMRDVPKLSPLVAHRVH----TEPLSGLIFTQE--SVLTVCREGHIKIWMRPGVAESQS---SSSE-TV--LSTSSKDKP 515 (528)
Q Consensus 448 ~~~d~~~~~~~~~~~~h----~~~V~~l~~s~d--~l~t~s~Dg~i~iW~~~~~~~~~~---~~~~-~v--l~~spd~~~ 515 (528)
.+.|+++.+....+... ...++.+.|+|+ ++++||.||.|+||++.+++.... .+.. .| ++|+|-|++
T Consensus 366 ~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~ 445 (459)
T KOG0288|consen 366 KVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSG 445 (459)
T ss_pred eeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCch
Confidence 88998888776666532 224788999997 599999999999999998874332 2222 45 888999999
Q ss_pred EEEeeee
Q 009715 516 LLSSKVV 522 (528)
Q Consensus 516 l~s~~~~ 522 (528)
|+++..+
T Consensus 446 Llsadk~ 452 (459)
T KOG0288|consen 446 LLSADKQ 452 (459)
T ss_pred hhcccCC
Confidence 9988765
No 94
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.93 E-value=2.8e-24 Score=212.01 Aligned_cols=313 Identities=15% Similarity=0.223 Sum_probs=233.5
Q ss_pred eeeeCCCcc-EEEEeCCCcEEEEeCCCCCCC------------------------------CCCCCeEEEEecCCcEEEE
Q 009715 135 NTNFDGKGT-YIIFNVGDAIFISDLNSQDKD------------------------------AKDGHDLLIGLNSGDVYSV 183 (528)
Q Consensus 135 ~~~~~~~g~-~~~~~~~~~i~v~~~~~~~~~------------------------------~~~~~~l~~g~~~G~v~iw 183 (528)
.+.|++... +.+.-.++.+||||++...+. .|. .-+++++.||+|++|
T Consensus 329 A~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~-~cF~TCSsD~TIRlW 407 (1080)
T KOG1408|consen 329 ACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPR-GCFTTCSSDGTIRLW 407 (1080)
T ss_pred EEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCc-cceeEecCCCcEEEe
Confidence 446664333 334444778999999877554 222 347899999999999
Q ss_pred Eccccccc------c-----ccce-----------eeeeeeccCC---cccCCceeEEEEeeCCCcEEEEEeCCceEEEE
Q 009715 184 SLRQQLQD------V-----GKKL-----------VGAHHYNKDG---SVNNSRCTSVTWVPGGDGAFVVGHADGNLYVY 238 (528)
Q Consensus 184 d~~~~~~~------~-----~~~~-----------~~~~~~~~~~---~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vw 238 (528)
|+..-..+ . .+.+ .....|.+.. ......+.+++.+|+|+ .||+|..-|+++||
T Consensus 408 ~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gq-hLAsGDr~GnlrVy 486 (1080)
T KOG1408|consen 408 DLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQ-HLASGDRGGNLRVY 486 (1080)
T ss_pred ecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcc-eecccCccCceEEE
Confidence 98751110 0 0000 0000011110 12445799999999999 89999999999999
Q ss_pred EcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECC---CCCEEEEEeCCCcEEEEecCCc-eEE
Q 009715 239 EKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST---DGTYLATVGRDGYLRVFDYSKE-QLI 314 (528)
Q Consensus 239 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp---dg~~l~s~~~dg~i~vwd~~~~-~~~ 314 (528)
++.. ........+|..+|.|+.|+. ..++||+++.|..|+|||+... .++
T Consensus 487 ~Lq~--------------------------l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~ 540 (1080)
T KOG1408|consen 487 DLQE--------------------------LEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLV 540 (1080)
T ss_pred Eehh--------------------------hhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchh
Confidence 9975 234555678999999999996 3578999999999999999744 566
Q ss_pred eeecccCCCeEEEEEcCCC--CEEEEEeCCCcEEEEECCCC-eEEEEeecC-----CCCeEEEEEecCCCCCCCCCCccc
Q 009715 315 CGGKSYYGALLCCAWSMDG--KYILTGGEDDLVQVWSMEDR-KVVAWGEGH-----NSWVSGVAFDSYWSQPNSDGTAET 386 (528)
Q Consensus 315 ~~~~~~~~~v~~l~~sp~g--~~l~sg~~dg~v~vwd~~~~-~~~~~~~~h-----~~~V~~v~f~p~~~~~~~dg~~~~ 386 (528)
+++.+|...|+++.|.-.| ..+++++.|..|. |+.... .-...+..| ...+..++..| ..
T Consensus 541 qtld~HSssITsvKFa~~gln~~MiscGADksim-Fr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp-------~~---- 608 (1080)
T KOG1408|consen 541 QTLDGHSSSITSVKFACNGLNRKMISCGADKSIM-FRVNQKASSGRLFPRHTQTLSKTTLYDMAVDP-------TS---- 608 (1080)
T ss_pred hhhcccccceeEEEEeecCCceEEEeccCchhhh-eehhccccCceeccccccccccceEEEeeeCC-------Cc----
Confidence 7889999999999998877 6899999998875 554431 111112112 24678999998 55
Q ss_pred eeEEEEEEeCCCeEEEEEccCCeEEEEeecCCCC--CCC--eecCCCCCccCCceeeeecCCCCceeeecCCCCceEEee
Q 009715 387 VMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLG--GSP--TFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHR 462 (528)
Q Consensus 387 ~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~--~~~--~~s~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~ 462 (528)
.+++++++|..|+|||+.+++..+.|+..... .-+ ...+.+ .+++..+.+..+.++|.-..+.+..+.
T Consensus 609 --k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSg------iY~atScsdktl~~~Df~sgEcvA~m~ 680 (1080)
T KOG1408|consen 609 --KLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSG------IYLATSCSDKTLCFVDFVSGECVAQMT 680 (1080)
T ss_pred --ceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCc------cEEEEeecCCceEEEEeccchhhhhhc
Confidence 69999999999999999999999999875332 222 233333 566888889999999999999999999
Q ss_pred cCCCCeEEEEEeCCe--EEEEECCCeEEEEeCCCC
Q 009715 463 VHTEPLSGLIFTQES--VLTVCREGHIKIWMRPGV 495 (528)
Q Consensus 463 ~h~~~V~~l~~s~d~--l~t~s~Dg~i~iW~~~~~ 495 (528)
+|.+.|+.+.|.+|. |++.+.||.|.||.++..
T Consensus 681 GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~~ 715 (1080)
T KOG1408|consen 681 GHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPLT 715 (1080)
T ss_pred CcchheeeeeecccchhheeecCCceEEEEECchh
Confidence 999999999999995 999999999999998753
No 95
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=7.4e-25 Score=190.87 Aligned_cols=242 Identities=18% Similarity=0.298 Sum_probs=188.1
Q ss_pred CCCCCeEEEEecCCcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEee--CCCcEEEEEeCCceEEEEEcCC
Q 009715 165 AKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVP--GGDGAFVVGHADGNLYVYEKSK 242 (528)
Q Consensus 165 ~~~~~~l~~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p--~g~~~l~tg~~dg~v~vwd~~~ 242 (528)
...|..|+++++|+.|+|+.++...+ .....+..+|.++|+.++|.. .|. +||+++.||.|.||....
T Consensus 20 DyygkrlATcsSD~tVkIf~v~~n~~---------s~ll~~L~Gh~GPVwqv~wahPk~G~-iLAScsYDgkVIiWke~~ 89 (299)
T KOG1332|consen 20 DYYGKRLATCSSDGTVKIFEVRNNGQ---------SKLLAELTGHSGPVWKVAWAHPKFGT-ILASCSYDGKVIIWKEEN 89 (299)
T ss_pred hhhcceeeeecCCccEEEEEEcCCCC---------ceeeeEecCCCCCeeEEeecccccCc-EeeEeecCceEEEEecCC
Confidence 46789999999999999999986221 112233446999999999976 777 999999999999999765
Q ss_pred CCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCC--CCEEEEEeCCCcEEEEecCCc---eEEeee
Q 009715 243 DGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTD--GTYLATVGRDGYLRVFDYSKE---QLICGG 317 (528)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spd--g~~l~s~~~dg~i~vwd~~~~---~~~~~~ 317 (528)
+ +.+....+..|...|++++|.|. |-.|++++.||.|.|.+++.. ......
T Consensus 90 g------------------------~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~ 145 (299)
T KOG1332|consen 90 G------------------------RWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIV 145 (299)
T ss_pred C------------------------chhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhh
Confidence 2 24456667789999999999994 678999999999999999754 122345
Q ss_pred cccCCCeEEEEEcCC---C-----------CEEEEEeCCCcEEEEECCCCe--EEEEeecCCCCeEEEEEecCCCCCCCC
Q 009715 318 KSYYGALLCCAWSMD---G-----------KYILTGGEDDLVQVWSMEDRK--VVAWGEGHNSWVSGVAFDSYWSQPNSD 381 (528)
Q Consensus 318 ~~~~~~v~~l~~sp~---g-----------~~l~sg~~dg~v~vwd~~~~~--~~~~~~~h~~~V~~v~f~p~~~~~~~d 381 (528)
..|.-.|++++|.|- | +.|++|+.|..|+||+...++ .-++|++|.++|+.++|.|. .
T Consensus 146 ~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~------~ 219 (299)
T KOG1332|consen 146 FAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPS------V 219 (299)
T ss_pred hccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccc------c
Confidence 679999999999985 4 569999999999999998763 34558899999999999993 2
Q ss_pred CCccceeEEEEEEeCCCeEEEEEccCCeEEEEeecCCCCCCCeecCCCCCccCCceeeeecCCCCceeeecCCCCceEEe
Q 009715 382 GTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAH 461 (528)
Q Consensus 382 g~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~ 461 (528)
| .....|+++++|++|.||..+........ . .+
T Consensus 220 g---l~~s~iAS~SqDg~viIwt~~~e~e~wk~-----------------------------------------t---ll 252 (299)
T KOG1332|consen 220 G---LPKSTIASCSQDGTVIIWTKDEEYEPWKK-----------------------------------------T---LL 252 (299)
T ss_pred C---CCceeeEEecCCCcEEEEEecCccCcccc-----------------------------------------c---cc
Confidence 2 22368999999999999986632111100 0 11
Q ss_pred ecCCCCeEEEEEeCCe--EEEEECCCeEEEEeCC
Q 009715 462 RVHTEPLSGLIFTQES--VLTVCREGHIKIWMRP 493 (528)
Q Consensus 462 ~~h~~~V~~l~~s~d~--l~t~s~Dg~i~iW~~~ 493 (528)
......+..+.|+..+ |+.++.|+.|++|.-.
T Consensus 253 ~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 253 EEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred ccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 1235679999999965 8888999999999744
No 96
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.93 E-value=1.4e-24 Score=206.30 Aligned_cols=294 Identities=15% Similarity=0.224 Sum_probs=223.4
Q ss_pred CCceeeccCCCCCC-CccccCCcccCCcccCCCCCCcc----------e-eeeCCCccEEEEeCCCcEEEEeCCCCCCC-
Q 009715 98 NGSRTLGFGGGNGG-SKSISGSSRIGSLGASSSSTSMT----------N-TNFDGKGTYIIFNVGDAIFISDLNSQDKD- 164 (528)
Q Consensus 98 ~g~~~~sf~gh~~~-v~~v~~s~~~~~~~~s~s~~s~~----------~-~~~~~~g~~~~~~~~~~i~v~~~~~~~~~- 164 (528)
.|+-+++|.-..++ -+-+.|.+ +...+.....+... . .+.+...+.+......+++|||+..+...
T Consensus 376 ggkpaysfh~~~dg~~qPvpfP~-dal~g~gIPrharq~~tL~HGEvVcAvtIS~~trhVyTgGkgcVKVWdis~pg~k~ 454 (705)
T KOG0639|consen 376 GGKPAYSFHVSADGQMQPVPFPP-DALVGPGIPRHARQINTLAHGEVVCAVTISNPTRHVYTGGKGCVKVWDISQPGNKS 454 (705)
T ss_pred CCcccccceecCCCcccCCCCCc-hhhcCCCCCchHHhhhhhccCcEEEEEEecCCcceeEecCCCeEEEeeccCCCCCC
Confidence 45566777655444 36667765 44332332221111 1 12233333333333346899999876433
Q ss_pred -------------------CCCCCeEEEEecCCcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcE
Q 009715 165 -------------------AKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGA 225 (528)
Q Consensus 165 -------------------~~~~~~l~~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~ 225 (528)
.+|++.|++|+.-.+|.|||+.... .++..+.....-.+.+++.+||.+ +
T Consensus 455 PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapT----------prikaeltssapaCyALa~spDak-v 523 (705)
T KOG0639|consen 455 PVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPT----------PRIKAELTSSAPACYALAISPDAK-V 523 (705)
T ss_pred ccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCC----------cchhhhcCCcchhhhhhhcCCccc-e
Confidence 8999999999999999999998621 222233222445788999999999 9
Q ss_pred EEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCCCCEEEEEeCCCcEEE
Q 009715 226 FVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRV 305 (528)
Q Consensus 226 l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~~~dg~i~v 305 (528)
.++++.||+|.|||+.. ...++.+++|+..+.||.+++||..|.+|+-|..||.
T Consensus 524 cFsccsdGnI~vwDLhn--------------------------q~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRc 577 (705)
T KOG0639|consen 524 CFSCCSDGNIAVWDLHN--------------------------QTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRC 577 (705)
T ss_pred eeeeccCCcEEEEEccc--------------------------ceeeecccCCCCCceeEEecCCCceeecCCCccceee
Confidence 99999999999999985 3467889999999999999999999999999999999
Q ss_pred EecCCceEEeeecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCeEEEEEecCCCCCCCCCCcc
Q 009715 306 FDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAE 385 (528)
Q Consensus 306 wd~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~v~f~p~~~~~~~dg~~~ 385 (528)
||+++++.+.... ....|.++..+|++.++++|.+++.+.|......+.. .+.-|++.|.++.|.+ -|
T Consensus 578 WDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~skp~ky-qlhlheScVLSlKFa~-------cG--- 645 (705)
T KOG0639|consen 578 WDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKY-QLHLHESCVLSLKFAY-------CG--- 645 (705)
T ss_pred hhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecCCccce-eecccccEEEEEEecc-------cC---
Confidence 9999988776543 5678999999999999999999999999987655443 4455999999999999 88
Q ss_pred ceeEEEEEEeCCCeEEEEEccCCeEEEEeecCCCCCCCeecCCCCCccCCceeeeecCCCCceeeecCCCCceEEeecCC
Q 009715 386 TVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHT 465 (528)
Q Consensus 386 ~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~ 465 (528)
+++++.+.|..+..|....|..+..... .
T Consensus 646 ---kwfvStGkDnlLnawrtPyGasiFqskE------------------------------------------------~ 674 (705)
T KOG0639|consen 646 ---KWFVSTGKDNLLNAWRTPYGASIFQSKE------------------------------------------------S 674 (705)
T ss_pred ---ceeeecCchhhhhhccCccccceeeccc------------------------------------------------c
Confidence 7999999999999999888776654432 4
Q ss_pred CCeEEEEEeCC--eEEEEECCCeEEEEeC
Q 009715 466 EPLSGLIFTQE--SVLTVCREGHIKIWMR 492 (528)
Q Consensus 466 ~~V~~l~~s~d--~l~t~s~Dg~i~iW~~ 492 (528)
.+|.++..+.| +|+||+.|....||.+
T Consensus 675 SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 675 SSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred CcceeeeeccCceEEEecCCCcceEEEEE
Confidence 56778777765 6999999998888875
No 97
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.93 E-value=3.8e-24 Score=218.94 Aligned_cols=263 Identities=19% Similarity=0.232 Sum_probs=218.0
Q ss_pred cCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEE-EeecCCCeEEEEE
Q 009715 209 NNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIAR-WHICQGSINSIAF 287 (528)
Q Consensus 209 h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~l~~ 287 (528)
+...+.+..|. ++ .+++++.|.+|++|+.... ..+.. +.+|.+.|.+++|
T Consensus 207 ~~~~~~~~q~~-~~--~~~~~s~~~tl~~~~~~~~--------------------------~~i~~~l~GH~g~V~~l~~ 257 (537)
T KOG0274|consen 207 DDHVVLCLQLH-DG--FFKSGSDDSTLHLWDLNNG--------------------------YLILTRLVGHFGGVWGLAF 257 (537)
T ss_pred Ccchhhhheee-cC--eEEecCCCceeEEeecccc--------------------------eEEEeeccCCCCCceeEEE
Confidence 67788999998 33 6999999999999998752 23444 7889999999999
Q ss_pred CCCCCEEEEEeCCCcEEEEecCCceEEeeecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCeE
Q 009715 288 STDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVS 367 (528)
Q Consensus 288 spdg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~~~~~~~~h~~~V~ 367 (528)
..-+.+|++|+.|.++++||..++++...+.+|...|.++... ..++++|+.|.+|++|++.++.++..+.+|.++|.
T Consensus 258 ~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~ 335 (537)
T KOG0274|consen 258 PSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVN 335 (537)
T ss_pred ecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEeccccccEE
Confidence 8778899999999999999999999999999999999988774 45788899999999999999999999999999999
Q ss_pred EEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEEEeecCC-CCCCCeecCCCCCccCCceeeeecCCCC
Q 009715 368 GVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGP-LGGSPTFSTGSQSAHWDNVCPVGTLQPA 446 (528)
Q Consensus 368 ~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~d~~~~~g~~~~~ 446 (528)
++..+- .++++|+.|++|++||+.+++++..+..+. .+.++.+... ..+..|++|..
T Consensus 336 ~v~~~~---------------~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-------~~~~Sgs~D~~ 393 (537)
T KOG0274|consen 336 CVQLDE---------------PLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-------NRLLSGSLDTT 393 (537)
T ss_pred EEEecC---------------CEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-------ceEEeeeeccc
Confidence 999953 589999999999999999999999998732 2333333221 45678888999
Q ss_pred ceeeecCCC-CceEEeecCCCCeEEEEEeCCeEEEEECCCeEEEEeCCCCccccC--C-CccceEEEccCCceEEEeeee
Q 009715 447 PSMRDVPKL-SPLVAHRVHTEPLSGLIFTQESVLTVCREGHIKIWMRPGVAESQS--S-SSETVLSTSSKDKPLLSSKVV 522 (528)
Q Consensus 447 ~~~~d~~~~-~~~~~~~~h~~~V~~l~~s~d~l~t~s~Dg~i~iW~~~~~~~~~~--~-~~~~vl~~spd~~~l~s~~~~ 522 (528)
+++||+++. +++.++.+|.+.|..+.+....|++++.|++|++||...+..... . |...|.++......++++..+
T Consensus 394 IkvWdl~~~~~c~~tl~~h~~~v~~l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~~~~il~s~~~ 473 (537)
T KOG0274|consen 394 IKVWDLRTKRKCIHTLQGHTSLVSSLLLRDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALGKEEILCSSDD 473 (537)
T ss_pred eEeecCCchhhhhhhhcCCcccccccccccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecCcceEEEEecC
Confidence 999999999 999999999999999999999999999999999999887764332 3 446665555544444444444
Q ss_pred cc
Q 009715 523 TS 524 (528)
Q Consensus 523 gs 524 (528)
|+
T Consensus 474 ~~ 475 (537)
T KOG0274|consen 474 GS 475 (537)
T ss_pred Ce
Confidence 43
No 98
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=7.4e-24 Score=190.81 Aligned_cols=261 Identities=17% Similarity=0.228 Sum_probs=197.0
Q ss_pred cCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEEC
Q 009715 209 NNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFS 288 (528)
Q Consensus 209 h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 288 (528)
....|..+.|+|.+. .|++++.||++++|++... .++..-.|+.++.+++|.
T Consensus 12 P~d~IS~v~f~~~~~-~LLvssWDgslrlYdv~~~---------------------------~l~~~~~~~~plL~c~F~ 63 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSS-DLLVSSWDGSLRLYDVPAN---------------------------SLKLKFKHGAPLLDCAFA 63 (323)
T ss_pred ChhceeeEEEcCcCC-cEEEEeccCcEEEEeccch---------------------------hhhhheecCCceeeeecc
Confidence 456899999998888 7888889999999999753 111112356899999998
Q ss_pred CCCCEEEEEeCCCcEEEEecCCceEEeeecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCeEE
Q 009715 289 TDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSG 368 (528)
Q Consensus 289 pdg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~ 368 (528)
++ ..+++|+.||.|+.+|+.+++.... -.|..+|.||..++....+++|+.|+.|++||.+...++..+. ....|.+
T Consensus 64 d~-~~~~~G~~dg~vr~~Dln~~~~~~i-gth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~ 140 (323)
T KOG1036|consen 64 DE-STIVTGGLDGQVRRYDLNTGNEDQI-GTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYC 140 (323)
T ss_pred CC-ceEEEeccCceEEEEEecCCcceee-ccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccc-cCceEEE
Confidence 74 5799999999999999998877554 4599999999999988889999999999999999866666555 4458888
Q ss_pred EEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEEEeecC---CCCCCCeecCCCCCccCCceeeeecCCC
Q 009715 369 VAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRG---PLGGSPTFSTGSQSAHWDNVCPVGTLQP 445 (528)
Q Consensus 369 v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~---~~~~~~~~s~~~~~~~~d~~~~~g~~~~ 445 (528)
+...- ..|+.|+.|..|.+||+++.....+.+.. -...++++.+.+ .-...++.++
T Consensus 141 ~~v~g---------------~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~------eGy~~sSieG 199 (323)
T KOG1036|consen 141 MDVSG---------------NRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNG------EGYVVSSIEG 199 (323)
T ss_pred EeccC---------------CEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCC------CceEEEeecc
Confidence 88753 58999999999999999986654432221 223455555533 2235566666
Q ss_pred CceeeecCCC----CceEEeecCCC---------CeEEEEEeCC--eEEEEECCCeEEEEeCCCCccccC--CCccce--
Q 009715 446 APSMRDVPKL----SPLVAHRVHTE---------PLSGLIFTQE--SVLTVCREGHIKIWMRPGVAESQS--SSSETV-- 506 (528)
Q Consensus 446 ~~~~~d~~~~----~~~~~~~~h~~---------~V~~l~~s~d--~l~t~s~Dg~i~iW~~~~~~~~~~--~~~~~v-- 506 (528)
.+.+-.+... +.-..++.|.. +|++|+|+|- .|+||+.||.|.+||+..++.... .....|
T Consensus 200 RVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~s 279 (323)
T KOG1036|consen 200 RVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISS 279 (323)
T ss_pred eEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEE
Confidence 6666555444 34455666643 7999999995 499999999999999988774333 233335
Q ss_pred EEEccCCceEEEeee
Q 009715 507 LSTSSKDKPLLSSKV 521 (528)
Q Consensus 507 l~~spd~~~l~s~~~ 521 (528)
++|+-||..||+++.
T Consensus 280 lsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 280 LSFSMDGSLLAIASS 294 (323)
T ss_pred EEeccCCCeEEEEec
Confidence 999999999998853
No 99
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=7.2e-25 Score=214.56 Aligned_cols=239 Identities=19% Similarity=0.278 Sum_probs=200.6
Q ss_pred CCCCCeEEEEecCCcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCC
Q 009715 165 AKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDG 244 (528)
Q Consensus 165 ~~~~~~l~~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~ 244 (528)
.+.+++|++|+.||.|++|++.+....+... +......|...|++++...+++ .|++++.|-+|++|+...+.
T Consensus 34 a~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~------~~asme~HsDWVNDiiL~~~~~-tlIS~SsDtTVK~W~~~~~~ 106 (735)
T KOG0308|consen 34 APNGRYLFTGGRDGIIRLWSVTQDSNEPSTP------YIASMEHHSDWVNDIILCGNGK-TLISASSDTTVKVWNAHKDN 106 (735)
T ss_pred CCCCceEEecCCCceEEEeccccccCCcccc------hhhhhhhhHhHHhhHHhhcCCC-ceEEecCCceEEEeecccCc
Confidence 5778899999999999999998733222122 2222334999999999999998 89999999999999987642
Q ss_pred CCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEE-CCCCCEEEEEeCCCcEEEEecCCce--EEe------
Q 009715 245 AGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAF-STDGTYLATVGRDGYLRVFDYSKEQ--LIC------ 315 (528)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-spdg~~l~s~~~dg~i~vwd~~~~~--~~~------ 315 (528)
. -....+..|...|.|+++ -++..++|+|+.|+.|.+||++++. .+.
T Consensus 107 ~------------------------~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t 162 (735)
T KOG0308|consen 107 T------------------------FCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVT 162 (735)
T ss_pred c------------------------hhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccc
Confidence 1 123445668899999999 7788999999999999999999773 222
Q ss_pred --eec-ccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCeEEEEEecCCCCCCCCCCccceeEEEE
Q 009715 316 --GGK-SYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFG 392 (528)
Q Consensus 316 --~~~-~~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~ 392 (528)
.+. ++...|.+++.++.|..|++|+..+.+++||.++++.+..++||...|..+..++ || .+++
T Consensus 163 ~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~d-------DG------t~~l 229 (735)
T KOG0308|consen 163 VNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVND-------DG------TRLL 229 (735)
T ss_pred cccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcC-------CC------CeEe
Confidence 222 6778999999999999999999999999999999999999999999999999999 99 7999
Q ss_pred EEeCCCeEEEEEccCCeEEEEeecCCCCCCCeecCCCCCccCCceeeeecCCCCceeeecCCCCceEEeecCCCCeEEEE
Q 009715 393 SVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLI 472 (528)
Q Consensus 393 s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~ 472 (528)
+++.|++|++||+...+|+.++ ..|+..|+++.
T Consensus 230 s~sSDgtIrlWdLgqQrCl~T~-----------------------------------------------~vH~e~VWaL~ 262 (735)
T KOG0308|consen 230 SASSDGTIRLWDLGQQRCLATY-----------------------------------------------IVHKEGVWALQ 262 (735)
T ss_pred ecCCCceEEeeeccccceeeeE-----------------------------------------------EeccCceEEEe
Confidence 9999999999999988877654 45888899999
Q ss_pred EeCCe--EEEEECCCeEEEEeCCC
Q 009715 473 FTQES--VLTVCREGHIKIWMRPG 494 (528)
Q Consensus 473 ~s~d~--l~t~s~Dg~i~iW~~~~ 494 (528)
.+|+. +++|+.||.|..=|+..
T Consensus 263 ~~~sf~~vYsG~rd~~i~~Tdl~n 286 (735)
T KOG0308|consen 263 SSPSFTHVYSGGRDGNIYRTDLRN 286 (735)
T ss_pred eCCCcceEEecCCCCcEEecccCC
Confidence 99974 99999999999988876
No 100
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.93 E-value=1.3e-24 Score=195.34 Aligned_cols=286 Identities=15% Similarity=0.219 Sum_probs=219.3
Q ss_pred cCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEEC
Q 009715 209 NNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFS 288 (528)
Q Consensus 209 h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 288 (528)
|+.+|.+.+|+|||. ++++|+.|..|+|+|++..-............ .....-.++.+..|..+|+++.|+
T Consensus 111 HK~~cR~aafs~DG~-lvATGsaD~SIKildvermlaks~~~em~~~~--------~qa~hPvIRTlYDH~devn~l~FH 181 (430)
T KOG0640|consen 111 HKSPCRAAAFSPDGS-LVATGSADASIKILDVERMLAKSKPKEMISGD--------TQARHPVIRTLYDHVDEVNDLDFH 181 (430)
T ss_pred cccceeeeeeCCCCc-EEEccCCcceEEEeehhhhhhhcchhhhccCC--------cccCCceEeehhhccCcccceeec
Confidence 999999999999999 99999999999999987311000000000000 001123467788899999999999
Q ss_pred CCCCEEEEEeCCCcEEEEecCCceEEeeec--ccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEee---cCC
Q 009715 289 TDGTYLATVGRDGYLRVFDYSKEQLICGGK--SYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGE---GHN 363 (528)
Q Consensus 289 pdg~~l~s~~~dg~i~vwd~~~~~~~~~~~--~~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~~~~~~~---~h~ 363 (528)
|....|++++.|+.|++||+......+.++ ....+|.++.|+|.|.+|++|.+-..+++||+++.++...-. .|.
T Consensus 182 Pre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht 261 (430)
T KOG0640|consen 182 PRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHT 261 (430)
T ss_pred chhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccc
Confidence 999999999999999999997554333222 235689999999999999999999999999999988765543 599
Q ss_pred CCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEEEeecC---CCCCCCeecCCCCCccCCceeee
Q 009715 364 SWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRG---PLGGSPTFSTGSQSAHWDNVCPV 440 (528)
Q Consensus 364 ~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~---~~~~~~~~s~~~~~~~~d~~~~~ 440 (528)
+.|++|.+++ .| ++.++++.||.|+|||--+++|+.++..- ..+.+..|+.++ ..+..
T Consensus 262 ~ai~~V~Ys~-------t~------~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~------kyiLs 322 (430)
T KOG0640|consen 262 GAITQVRYSS-------TG------SLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNG------KYILS 322 (430)
T ss_pred cceeEEEecC-------Cc------cEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCC------eEEee
Confidence 9999999999 88 79999999999999999999999888643 455667787777 56677
Q ss_pred ecCCCCceeeecCCCCceEEeecCC--C---CeEEEEEeC--CeEEEE-ECCCeEEEEeCCCCc---cccCCCccce--E
Q 009715 441 GTLQPAPSMRDVPKLSPLVAHRVHT--E---PLSGLIFTQ--ESVLTV-CREGHIKIWMRPGVA---ESQSSSSETV--L 507 (528)
Q Consensus 441 g~~~~~~~~~d~~~~~~~~~~~~h~--~---~V~~l~~s~--d~l~t~-s~Dg~i~iW~~~~~~---~~~~~~~~~v--l 507 (528)
...+..+++|++.+.+++..+.+-. + .-+...|+. |+++.- -..+.++-||-.+.. ....+|.+.+ +
T Consensus 323 SG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i 402 (430)
T KOG0640|consen 323 SGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWI 402 (430)
T ss_pred cCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEE
Confidence 7788999999999999998887541 1 123445665 454443 355789999976654 3344788877 4
Q ss_pred EEccCCceEEEeeee
Q 009715 508 STSSKDKPLLSSKVV 522 (528)
Q Consensus 508 ~~spd~~~l~s~~~~ 522 (528)
.-||.+--+++++.+
T Consensus 403 ~HSP~~p~FmTcsdD 417 (430)
T KOG0640|consen 403 VHSPVEPAFMTCSDD 417 (430)
T ss_pred EeCCCCCceeeeccc
Confidence 449999888888765
No 101
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.93 E-value=3.8e-22 Score=190.22 Aligned_cols=356 Identities=19% Similarity=0.249 Sum_probs=261.3
Q ss_pred chhhhhhhhhcCCCCCceeeccCCCCCCCccccCCcccCCcccCCCCCCcceeeeCCCccEE-EEeCCC--cEEEEeCCC
Q 009715 84 GVVRSAAAKLLGTGNGSRTLGFGGGNGGSKSISGSSRIGSLGASSSSTSMTNTNFDGKGTYI-IFNVGD--AIFISDLNS 160 (528)
Q Consensus 84 g~~~~~~~~~~~~~~g~~~~sf~gh~~~v~~v~~s~~~~~~~~s~s~~s~~~~~~~~~g~~~-~~~~~~--~i~v~~~~~ 160 (528)
|....|-.|+|...+=..+..|-....+|.||+|++..+ |.++ +.+.++ -+.+||...
T Consensus 129 g~~~~phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~-------------------G~~l~~vD~s~~h~lSVWdWqk 189 (626)
T KOG2106|consen 129 GRPLQPHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKING-------------------GSLLCAVDDSNPHMLSVWDWQK 189 (626)
T ss_pred CCcCCCeeeecccccceeeeeeccccccceeeeecccCC-------------------CceEEEecCCCccccchhhchh
Confidence 556678899999999888888877788899999998333 2222 222222 234555544
Q ss_pred CCCC---------------CCCCCeEEEEecCCcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcE
Q 009715 161 QDKD---------------AKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGA 225 (528)
Q Consensus 161 ~~~~---------------~~~~~~l~~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~ 225 (528)
..+. +|.+..|++-...|.++.|+++.... ......|.+. .+.-|.|++|.++|+
T Consensus 190 ~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l-----~k~~~~fek~---ekk~Vl~v~F~engd-- 259 (626)
T KOG2106|consen 190 KAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSL-----VKRQGIFEKR---EKKFVLCVTFLENGD-- 259 (626)
T ss_pred hhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCce-----EEEeeccccc---cceEEEEEEEcCCCC--
Confidence 3322 88888899999999999999876221 1111222222 236799999999998
Q ss_pred EEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCCCCEEEEEeCCCcEEE
Q 009715 226 FVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRV 305 (528)
Q Consensus 226 l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~~~dg~i~v 305 (528)
+++|..+|.|.||+... ....+..+.|.+.|.+++...+|.+| +|+.|..|..
T Consensus 260 viTgDS~G~i~Iw~~~~--------------------------~~~~k~~~aH~ggv~~L~~lr~Gtll-SGgKDRki~~ 312 (626)
T KOG2106|consen 260 VITGDSGGNILIWSKGT--------------------------NRISKQVHAHDGGVFSLCMLRDGTLL-SGGKDRKIIL 312 (626)
T ss_pred EEeecCCceEEEEeCCC--------------------------ceEEeEeeecCCceEEEEEecCccEe-ecCccceEEe
Confidence 99999999999999854 22334445899999999999999755 5999999999
Q ss_pred EecCCceEEee--ecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCeEEEEEecCCCCCCCCCC
Q 009715 306 FDYSKEQLICG--GKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGT 383 (528)
Q Consensus 306 wd~~~~~~~~~--~~~~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~v~f~p~~~~~~~dg~ 383 (528)
|| ..-+.++. +....++|+.++=...+ |++|...+.|..=.++.+-.+ ..++|......++-+| +.
T Consensus 313 Wd-~~y~k~r~~elPe~~G~iRtv~e~~~d--i~vGTtrN~iL~Gt~~~~f~~-~v~gh~delwgla~hp-------s~- 380 (626)
T KOG2106|consen 313 WD-DNYRKLRETELPEQFGPIRTVAEGKGD--ILVGTTRNFILQGTLENGFTL-TVQGHGDELWGLATHP-------SK- 380 (626)
T ss_pred cc-ccccccccccCchhcCCeeEEecCCCc--EEEeeccceEEEeeecCCceE-EEEecccceeeEEcCC-------Ch-
Confidence 99 33333322 33456788887654322 777877777766666655433 4457999999999999 65
Q ss_pred ccceeEEEEEEeCCCeEEEEEccCCeEEEEeecCCCCCCCeecCCCCCccCCceeeeecCCCCceeeecCCCCceEEeec
Q 009715 384 AETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRV 463 (528)
Q Consensus 384 ~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~ 463 (528)
..++++++|+.+++|+ ..+.+.......+..++.|.+.+ .+++|...+.-.+.|.++...+.....
T Consensus 381 -----~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~~~~fhpsg-------~va~Gt~~G~w~V~d~e~~~lv~~~~d 446 (626)
T KOG2106|consen 381 -----NQLLTCGQDKHVRLWN--DHKLEWTKIIEDPAECADFHPSG-------VVAVGTATGRWFVLDTETQDLVTIHTD 446 (626)
T ss_pred -----hheeeccCcceEEEcc--CCceeEEEEecCceeEeeccCcc-------eEEEeeccceEEEEecccceeEEEEec
Confidence 5899999999999999 66677776666777777777664 568888889889999999666666655
Q ss_pred CCCCeEEEEEeCCe--EEEEECCCeEEEEeCCCCccccC----CCccce--EEEccCCceEEEeeee
Q 009715 464 HTEPLSGLIFTQES--VLTVCREGHIKIWMRPGVAESQS----SSSETV--LSTSSKDKPLLSSKVV 522 (528)
Q Consensus 464 h~~~V~~l~~s~d~--l~t~s~Dg~i~iW~~~~~~~~~~----~~~~~v--l~~spd~~~l~s~~~~ 522 (528)
.++++.+.|+|++ |+.|+.|+.|+|+.+........ -+...| |.||+|+++|.+-+.+
T Consensus 447 -~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d 512 (626)
T KOG2106|consen 447 -NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGD 512 (626)
T ss_pred -CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCc
Confidence 8899999999985 99999999999999875442111 122445 8899999999987655
No 102
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=8.6e-25 Score=218.00 Aligned_cols=235 Identities=13% Similarity=0.201 Sum_probs=192.5
Q ss_pred CceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECC-
Q 009715 211 SRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST- 289 (528)
Q Consensus 211 ~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp- 289 (528)
..+.+++|.....++|||++..|.|.+||+.... +...+..+..|+..|++++|++
T Consensus 88 ~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~-----------------------rnk~l~~f~EH~Rs~~~ldfh~t 144 (839)
T KOG0269|consen 88 YSAADVKWGQLYSNLIATCSTNGVISVWDLNKSI-----------------------RNKLLTVFNEHERSANKLDFHST 144 (839)
T ss_pred eehhhcccccchhhhheeecCCCcEEEEecCccc-----------------------cchhhhHhhhhccceeeeeeccC
Confidence 4577899997777799999999999999998631 2345567788999999999999
Q ss_pred CCCEEEEEeCCCcEEEEecCCceEEeeecccCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCC-CeEEEEeecCCCCeE
Q 009715 290 DGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSM-DGKYILTGGEDDLVQVWSMED-RKVVAWGEGHNSWVS 367 (528)
Q Consensus 290 dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp-~g~~l~sg~~dg~v~vwd~~~-~~~~~~~~~h~~~V~ 367 (528)
...+|++|++||.|++||++..+-...+.+....|+.|.|+| .+.+++++.+.|.+++||++. .++...+.+|.++|.
T Consensus 145 ep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~ 224 (839)
T KOG0269|consen 145 EPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVL 224 (839)
T ss_pred CccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceE
Confidence 678999999999999999999888888888889999999999 677899999999999999998 467788889999999
Q ss_pred EEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEEEeecCCCCCCCeecCCCCCccCCceeeeecCCCCc
Q 009715 368 GVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAP 447 (528)
Q Consensus 368 ~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~d~~~~~g~~~~~~ 447 (528)
++.|+| ++ .+|+|||.|++|+|||+...+.-...
T Consensus 225 c~nwhP-------nr------~~lATGGRDK~vkiWd~t~~~~~~~~--------------------------------- 258 (839)
T KOG0269|consen 225 CLNWHP-------NR------EWLATGGRDKMVKIWDMTDSRAKPKH--------------------------------- 258 (839)
T ss_pred EEeecC-------CC------ceeeecCCCccEEEEeccCCCcccee---------------------------------
Confidence 999999 88 79999999999999999864421111
Q ss_pred eeeecCCCCceEEeecCCCCeEEEEEeCCe---EEEEE--CCCeEEEEeCCCCcc---ccCCCccce--EEE-ccCCceE
Q 009715 448 SMRDVPKLSPLVAHRVHTEPLSGLIFTQES---VLTVC--REGHIKIWMRPGVAE---SQSSSSETV--LST-SSKDKPL 516 (528)
Q Consensus 448 ~~~d~~~~~~~~~~~~h~~~V~~l~~s~d~---l~t~s--~Dg~i~iW~~~~~~~---~~~~~~~~v--l~~-spd~~~l 516 (528)
++ .-..+|..|.|.|++ |++++ .|-.|+|||+...-. ....|.+.+ ++| +.|-..|
T Consensus 259 ------------tI-nTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l 325 (839)
T KOG0269|consen 259 ------------TI-NTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINL 325 (839)
T ss_pred ------------EE-eecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceee
Confidence 11 124689999999974 88886 677899999876542 333566666 677 5677788
Q ss_pred EEeeeeccccc
Q 009715 517 LSSKVVTSSYR 527 (528)
Q Consensus 517 ~s~~~~gs~~~ 527 (528)
.+++.+|.+++
T Consensus 326 ~s~sKD~tv~q 336 (839)
T KOG0269|consen 326 WSCSKDGTVLQ 336 (839)
T ss_pred EeecCccHHHH
Confidence 88888887764
No 103
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=3e-23 Score=187.26 Aligned_cols=301 Identities=22% Similarity=0.239 Sum_probs=207.3
Q ss_pred eccCCCCCCCccccCCcccCCcccCCCCCCcceeeeCCCccEEEEeCCCcEEEEeCCCCCCCCCCCCeEEEEecCCcEEE
Q 009715 103 LGFGGGNGGSKSISGSSRIGSLGASSSSTSMTNTNFDGKGTYIIFNVGDAIFISDLNSQDKDAKDGHDLLIGLNSGDVYS 182 (528)
Q Consensus 103 ~sf~gh~~~v~~v~~s~~~~~~~~s~s~~s~~~~~~~~~g~~~~~~~~~~i~v~~~~~~~~~~~~~~~l~~g~~~G~v~i 182 (528)
..++||.+.|++++|++ ||+.|++...|+.|++
T Consensus 80 ~~LKgH~~~vt~~~FsS-----------------------------------------------dGK~lat~~~Dr~Ir~ 112 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSS-----------------------------------------------DGKKLATISGDRSIRL 112 (420)
T ss_pred hhhhccCCceeeeEEcC-----------------------------------------------CCceeEEEeCCceEEE
Confidence 45789999999999976 4556667777788888
Q ss_pred EEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEe
Q 009715 183 VSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVA 262 (528)
Q Consensus 183 wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~ 262 (528)
|+++.-.+..++. .+.+- .-+.-+.++|.||-..+++.......+++|.+.+.......++...
T Consensus 113 w~~~DF~~~eHr~----~R~nv----e~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~-------- 176 (420)
T KOG2096|consen 113 WDVRDFENKEHRC----IRQNV----EYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVH-------- 176 (420)
T ss_pred EecchhhhhhhhH----hhccc----cCCCceEEEECCCcceEEEEEccCCEEEEEEeeecccCCCCccccc--------
Confidence 8877522221211 11111 2224678999999995555566666899999865332222222111
Q ss_pred ccCCCCCCCeEEEeecCCCeEEEEECCCCCEEEEEeCCCcEEEEecCCceEEeeecccCCCeEEEEEcCCCCEEEEEeCC
Q 009715 263 HPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGED 342 (528)
Q Consensus 263 ~~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~sg~~d 342 (528)
......-+.|+-.|..+-....+.+|++++.|..|.+|+++ |+.+..+..........+.||+|+++++++-.
T Consensus 177 ------~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFT 249 (420)
T KOG2096|consen 177 ------IDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFT 249 (420)
T ss_pred ------ccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCC
Confidence 11111223456677778888889999999999999999999 99988887666667778999999999999988
Q ss_pred CcEEEEECCC---C-----eEEEEeecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEEEe
Q 009715 343 DLVQVWSMED---R-----KVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPL 414 (528)
Q Consensus 343 g~v~vwd~~~---~-----~~~~~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~ 414 (528)
--|+||.+-- | +.+..++||.+.|..++|++ +. .++++.+.||+++|||..-.-. .
T Consensus 250 pDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn-------~S------~r~vtvSkDG~wriwdtdVrY~---~ 313 (420)
T KOG2096|consen 250 PDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSN-------SS------TRAVTVSKDGKWRIWDTDVRYE---A 313 (420)
T ss_pred CCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCC-------Cc------ceeEEEecCCcEEEeeccceEe---c
Confidence 8899998632 2 34667889999999999999 77 7999999999999999753211 1
Q ss_pred ecCCCCCCCeecCCCCCccCCceeeeecCCCCceeeecCCCCceEEeecCCCCeEEEEEeCCe-EEEEECCCeEEEEeCC
Q 009715 415 RRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES-VLTVCREGHIKIWMRP 493 (528)
Q Consensus 415 ~~~~~~~~~~~s~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~~s~d~-l~t~s~Dg~i~iW~~~ 493 (528)
...+.. + ..|. .|+ ...-..++ .|+.+|++ ++..+....|+++.-+
T Consensus 314 ~qDpk~--L---------------k~g~-------------~pl--~aag~~p~-RL~lsP~g~~lA~s~gs~l~~~~se 360 (420)
T KOG2096|consen 314 GQDPKI--L---------------KEGS-------------APL--HAAGSEPV-RLELSPSGDSLAVSFGSDLKVFASE 360 (420)
T ss_pred CCCchH--h---------------hcCC-------------cch--hhcCCCce-EEEeCCCCcEEEeecCCceEEEEcc
Confidence 110000 0 0000 010 01112344 78999986 6667777789999877
Q ss_pred CCccc---cCCCccce--EEEccCCceEEEeeee
Q 009715 494 GVAES---QSSSSETV--LSTSSKDKPLLSSKVV 522 (528)
Q Consensus 494 ~~~~~---~~~~~~~v--l~~spd~~~l~s~~~~ 522 (528)
.++.. ..-|.+.| +++++||+++++.+..
T Consensus 361 ~g~~~~~~e~~h~~~Is~is~~~~g~~~atcGdr 394 (420)
T KOG2096|consen 361 DGKDYPELEDIHSTTISSISYSSDGKYIATCGDR 394 (420)
T ss_pred cCccchhHHHhhcCceeeEEecCCCcEEeeecce
Confidence 66532 23577777 9999999999988653
No 104
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=1.5e-24 Score=188.88 Aligned_cols=245 Identities=17% Similarity=0.223 Sum_probs=191.1
Q ss_pred cCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEEC
Q 009715 209 NNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFS 288 (528)
Q Consensus 209 h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 288 (528)
|.+.|.++...--|+ +|+|++.|++|+||.++..+. .+.+..+.+|.++|..++|.
T Consensus 10 H~D~IHda~lDyygk-rlATcsSD~tVkIf~v~~n~~-----------------------s~ll~~L~Gh~GPVwqv~wa 65 (299)
T KOG1332|consen 10 HEDMIHDAQLDYYGK-RLATCSSDGTVKIFEVRNNGQ-----------------------SKLLAELTGHSGPVWKVAWA 65 (299)
T ss_pred hhhhhhHhhhhhhcc-eeeeecCCccEEEEEEcCCCC-----------------------ceeeeEecCCCCCeeEEeec
Confidence 888899988888899 999999999999999986432 35778899999999999996
Q ss_pred C--CCCEEEEEeCCCcEEEEecCCceE--EeeecccCCCeEEEEEcCC--CCEEEEEeCCCcEEEEECCCC---eEEEEe
Q 009715 289 T--DGTYLATVGRDGYLRVFDYSKEQL--ICGGKSYYGALLCCAWSMD--GKYILTGGEDDLVQVWSMEDR---KVVAWG 359 (528)
Q Consensus 289 p--dg~~l~s~~~dg~i~vwd~~~~~~--~~~~~~~~~~v~~l~~sp~--g~~l~sg~~dg~v~vwd~~~~---~~~~~~ 359 (528)
. .|.+||+++.||.|.||.-.+++- ......|...|++++|.|. |-.|++++.||.|.|++.+.. ......
T Consensus 66 hPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~ 145 (299)
T KOG1332|consen 66 HPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIV 145 (299)
T ss_pred ccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhh
Confidence 5 799999999999999999987743 3345568899999999985 568999999999999998764 223445
Q ss_pred ecCCCCeEEEEEecCCCCCCCC--CCccceeEEEEEEeCCCeEEEEEccCCeEEEEeecCCCCCCCeecCCCCCccCCce
Q 009715 360 EGHNSWVSGVAFDSYWSQPNSD--GTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNV 437 (528)
Q Consensus 360 ~~h~~~V~~v~f~p~~~~~~~d--g~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~d~~ 437 (528)
..|.-.|++++|.|-. .|.+. .......++|++|+.|..|+||+...++-+
T Consensus 146 ~aH~~GvnsVswapa~-~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~-------------------------- 198 (299)
T KOG1332|consen 146 FAHEIGVNSVSWAPAS-APGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWK-------------------------- 198 (299)
T ss_pred hccccccceeeecCcC-CCccccccCcccccceeeccCCccceeeeecCCcchh--------------------------
Confidence 6799999999999831 11100 011122378999999999999998876211
Q ss_pred eeeecCCCCceeeecCCCCceEEeecCCCCeEEEEEeCC------eEEEEECCCeEEEEeCCCCcccc-----CCCccce
Q 009715 438 CPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE------SVLTVCREGHIKIWMRPGVAESQ-----SSSSETV 506 (528)
Q Consensus 438 ~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~~s~d------~l~t~s~Dg~i~iW~~~~~~~~~-----~~~~~~v 506 (528)
....+++|.+-|++++|.|. .|++++.||+|.||......+.. ..+...+
T Consensus 199 -------------------~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~ 259 (299)
T KOG1332|consen 199 -------------------LERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVV 259 (299)
T ss_pred -------------------hhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcce
Confidence 11236789999999999995 39999999999999977443221 1233444
Q ss_pred --EEEccCCceEEEeeeec
Q 009715 507 --LSTSSKDKPLLSSKVVT 523 (528)
Q Consensus 507 --l~~spd~~~l~s~~~~g 523 (528)
+++|+.|+.|+.+.-++
T Consensus 260 w~vSWS~sGn~LaVs~GdN 278 (299)
T KOG1332|consen 260 WRVSWSLSGNILAVSGGDN 278 (299)
T ss_pred EEEEEeccccEEEEecCCc
Confidence 88899999998876553
No 105
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.92 E-value=1.3e-23 Score=207.28 Aligned_cols=270 Identities=15% Similarity=0.180 Sum_probs=212.2
Q ss_pred eccCCCCCCCccccCCcccCCcccCCCCCCcceeeeCCCccEEEEeCCCcEEE--EeCCCCCCC--------CCCCCeEE
Q 009715 103 LGFGGGNGGSKSISGSSRIGSLGASSSSTSMTNTNFDGKGTYIIFNVGDAIFI--SDLNSQDKD--------AKDGHDLL 172 (528)
Q Consensus 103 ~sf~gh~~~v~~v~~s~~~~~~~~s~s~~s~~~~~~~~~g~~~~~~~~~~i~v--~~~~~~~~~--------~~~~~~l~ 172 (528)
..+.||+..|+.|.+.+ +..+.+ .+.||++.+|......++ ..+..+... ..++-.|+
T Consensus 8 ~~l~gH~~DVr~v~~~~--~~~i~s----------~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~ 75 (745)
T KOG0301|consen 8 HELEGHKSDVRAVAVTD--GVCIIS----------GSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLV 75 (745)
T ss_pred EEeccCccchheeEecC--CeEEee----------cCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceE
Confidence 45689999998888765 222333 345888888876443322 222222221 23556789
Q ss_pred EEecCCcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCcccc
Q 009715 173 IGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPV 252 (528)
Q Consensus 173 ~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~ 252 (528)
+|+.|+.|.+|.+.+.. . .-....|+..|.|+....++. +++|+.|.++++|....
T Consensus 76 ~g~~D~~i~v~~~~~~~-----P-------~~~LkgH~snVC~ls~~~~~~--~iSgSWD~TakvW~~~~---------- 131 (745)
T KOG0301|consen 76 VGGMDTTIIVFKLSQAE-----P-------LYTLKGHKSNVCSLSIGEDGT--LISGSWDSTAKVWRIGE---------- 131 (745)
T ss_pred eecccceEEEEecCCCC-----c-------hhhhhccccceeeeecCCcCc--eEecccccceEEecchh----------
Confidence 99999999999987611 1 111224999999999887775 99999999999998763
Q ss_pred ccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCCCCEEEEEeCCCcEEEEecCCceEEeeecccCCCeEEEEEcCC
Q 009715 253 IKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMD 332 (528)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~ 332 (528)
....+++|+.+|.++++-|+. .+++|+.|..|++|.- ++.++++.+|.+.|+.+++-++
T Consensus 132 ------------------l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~ 190 (745)
T KOG0301|consen 132 ------------------LVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDD 190 (745)
T ss_pred ------------------hhcccCCcchheeeeeecCCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecC
Confidence 334488999999999999987 8999999999999986 7888999999999999999987
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEE
Q 009715 333 GKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVV 412 (528)
Q Consensus 333 g~~l~sg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~ 412 (528)
+ .+++++.||.|++|++ +++++..+.+|++.|.++...+ ++ ..++++++|++++||+.. ++.+
T Consensus 191 ~-~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~-------~~------~~Ivs~gEDrtlriW~~~--e~~q 253 (745)
T KOG0301|consen 191 S-HFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMAL-------SD------GLIVSTGEDRTLRIWKKD--ECVQ 253 (745)
T ss_pred C-CeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecC-------CC------CeEEEecCCceEEEeecC--ceEE
Confidence 6 4889999999999999 7899999999999999999554 33 489999999999999976 6665
Q ss_pred EeecCCCCCCCeecCCCCCccCCceeeeecCCCCceeeecCCCCceEEeecCCCCeEEEEEeCCe-EEEEECCCeEEEEe
Q 009715 413 PLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES-VLTVCREGHIKIWM 491 (528)
Q Consensus 413 ~~~~~~~~~~~~~s~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~~s~d~-l~t~s~Dg~i~iW~ 491 (528)
.+.. ..-.|+++.+-+++ |++||.||.||||.
T Consensus 254 ~I~l-----------------------------------------------PttsiWsa~~L~NgDIvvg~SDG~VrVfT 286 (745)
T KOG0301|consen 254 VITL-----------------------------------------------PTTSIWSAKVLLNGDIVVGGSDGRVRVFT 286 (745)
T ss_pred EEec-----------------------------------------------CccceEEEEEeeCCCEEEeccCceEEEEE
Confidence 5543 24468888888776 99999999999998
Q ss_pred CC
Q 009715 492 RP 493 (528)
Q Consensus 492 ~~ 493 (528)
..
T Consensus 287 ~~ 288 (745)
T KOG0301|consen 287 VD 288 (745)
T ss_pred ec
Confidence 65
No 106
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.92 E-value=4e-23 Score=181.75 Aligned_cols=260 Identities=17% Similarity=0.193 Sum_probs=210.9
Q ss_pred CCCCCeEEEEecCCcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCC
Q 009715 165 AKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDG 244 (528)
Q Consensus 165 ~~~~~~l~~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~ 244 (528)
..+|..|+.|+.|+.+.+|++... ...+......|.+.|-.++|+|....+|++++.|.+|++||++...
T Consensus 29 n~~g~~lasgs~dktv~v~n~e~~----------r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k 98 (313)
T KOG1407|consen 29 NCDGTKLASGSFDKTVSVWNLERD----------RFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGK 98 (313)
T ss_pred cccCceeeecccCCceEEEEecch----------hhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCc
Confidence 478999999999999999999862 1223334456999999999999877799999999999999998632
Q ss_pred CCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCCCCEEEEEeCCCcEEEEecCCceEEeeecccCCCe
Q 009715 245 AGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGAL 324 (528)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v 324 (528)
++..... .+.=.-+.|+|+|.+++.++.|..|.+.|.++.+.+...+ ..-.+
T Consensus 99 --------------------------~~~~i~~-~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ 150 (313)
T KOG1407|consen 99 --------------------------CTARIET-KGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEV 150 (313)
T ss_pred --------------------------EEEEeec-cCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhc-cccee
Confidence 2222211 1333458999999999999999999999999888776554 45668
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEE
Q 009715 325 LCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWD 404 (528)
Q Consensus 325 ~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd 404 (528)
..++|+.++.+++.....|.|.|.....-+++..+++|.....||.|+| +| ++|++|+.|..+.+||
T Consensus 151 ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p-------~G------ryfA~GsADAlvSLWD 217 (313)
T KOG1407|consen 151 NEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDP-------DG------RYFATGSADALVSLWD 217 (313)
T ss_pred eeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECC-------CC------ceEeeccccceeeccC
Confidence 8899998888887777789999999999999999999999999999999 99 8999999999999999
Q ss_pred ccCCeEEEEeecCCCCCCCeecCCCCCccCCceeeeecCCCCceeeecCCCCceEEeecCCCCeEEEEEeCCe--EEEEE
Q 009715 405 LEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVC 482 (528)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~~s~d~--l~t~s 482 (528)
+..--|++.+. -++=+|..|.|+.|+ |+++|
T Consensus 218 ~~ELiC~R~is-----------------------------------------------RldwpVRTlSFS~dg~~lASaS 250 (313)
T KOG1407|consen 218 VDELICERCIS-----------------------------------------------RLDWPVRTLSFSHDGRMLASAS 250 (313)
T ss_pred hhHhhhheeec-----------------------------------------------cccCceEEEEeccCcceeeccC
Confidence 98766554443 367789999999985 99999
Q ss_pred CCCeEEEEeCCCCccccC-CCccce--EEEccCCceEEEeeee
Q 009715 483 REGHIKIWMRPGVAESQS-SSSETV--LSTSSKDKPLLSSKVV 522 (528)
Q Consensus 483 ~Dg~i~iW~~~~~~~~~~-~~~~~v--l~~spd~~~l~s~~~~ 522 (528)
.|..|-|=+++++..... .+.+.. +++.|....||-+..+
T Consensus 251 EDh~IDIA~vetGd~~~eI~~~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 251 EDHFIDIAEVETGDRVWEIPCEGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred ccceEEeEecccCCeEEEeeccCCceeEEecCCCceeeEEecC
Confidence 999999999988774332 333333 8999999888866433
No 107
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=3.2e-22 Score=181.24 Aligned_cols=271 Identities=12% Similarity=0.120 Sum_probs=220.5
Q ss_pred CCCCCeEEEEecCCcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeC--CceEEEEEcCC
Q 009715 165 AKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHA--DGNLYVYEKSK 242 (528)
Q Consensus 165 ~~~~~~l~~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~--dg~v~vwd~~~ 242 (528)
+.+|..|++++.|..|++||.....+. +....++..|..+.|..... .++.++. |.+|+..++..
T Consensus 23 s~~G~~litss~dDsl~LYd~~~g~~~------------~ti~skkyG~~~~~Fth~~~-~~i~sStk~d~tIryLsl~d 89 (311)
T KOG1446|consen 23 SDDGLLLITSSEDDSLRLYDSLSGKQV------------KTINSKKYGVDLACFTHHSN-TVIHSSTKEDDTIRYLSLHD 89 (311)
T ss_pred cCCCCEEEEecCCCeEEEEEcCCCcee------------eEeecccccccEEEEecCCc-eEEEccCCCCCceEEEEeec
Confidence 478899999999999999998763211 11111556788889987776 5555554 88999999875
Q ss_pred CCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCCCCEEEEEeCCCcEEEEecCCceEEeeecccCC
Q 009715 243 DGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYG 322 (528)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 322 (528)
.+.++.+.+|...|++|+.+|-+..+++++.|++|++||++..++...+..-..
T Consensus 90 --------------------------NkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~ 143 (311)
T KOG1446|consen 90 --------------------------NKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR 143 (311)
T ss_pred --------------------------CceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCC
Confidence 467899999999999999999889999999999999999998877766653333
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCC--eEEEEee---cCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCC
Q 009715 323 ALLCCAWSMDGKYILTGGEDDLVQVWSMEDR--KVVAWGE---GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQD 397 (528)
Q Consensus 323 ~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~--~~~~~~~---~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D 397 (528)
..++|.|.|-++|++...+.|++||++.. .+..++. +-....+.|.|+| || +.|+.+...
T Consensus 144 --pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~-------dG------K~iLlsT~~ 208 (311)
T KOG1446|consen 144 --PIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSP-------DG------KSILLSTNA 208 (311)
T ss_pred --cceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcC-------CC------CEEEEEeCC
Confidence 34899999999999998889999999873 3333333 3456789999999 99 688888889
Q ss_pred CeEEEEEccCCeEEEEeecCCCCC----CCeecCCCCCccCCceeeeecCCCCceeeecCCCCceEEeec-CCCCeEEEE
Q 009715 398 TRLLLWDLEMDEIVVPLRRGPLGG----SPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRV-HTEPLSGLI 472 (528)
Q Consensus 398 ~~i~lwd~~~~~~~~~~~~~~~~~----~~~~s~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~-h~~~V~~l~ 472 (528)
+.+.+.|.-.|.....+...+... ..+|+|++ ..+..|..++.+.+|++.++.++..+++ +..++.++.
T Consensus 209 s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds------~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~ 282 (311)
T KOG1446|consen 209 SFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDS------KFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVR 282 (311)
T ss_pred CcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCC------cEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccc
Confidence 999999999999888887655444 67888888 6678888899999999999999999998 799999999
Q ss_pred EeCCeEEEEECCCeEEEEeCCCC
Q 009715 473 FTQESVLTVCREGHIKIWMRPGV 495 (528)
Q Consensus 473 ~s~d~l~t~s~Dg~i~iW~~~~~ 495 (528)
|+|.+.+-++.+..+.+|-....
T Consensus 283 fnP~~~mf~sa~s~l~fw~p~~~ 305 (311)
T KOG1446|consen 283 FNPRYAMFVSASSNLVFWLPDED 305 (311)
T ss_pred cCCceeeeeecCceEEEEecccc
Confidence 99998777777889999976543
No 108
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=2.8e-25 Score=219.84 Aligned_cols=226 Identities=17% Similarity=0.312 Sum_probs=199.7
Q ss_pred cCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEEC
Q 009715 209 NNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFS 288 (528)
Q Consensus 209 h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 288 (528)
|...|.|+..-..++ .+++|+.|..+-+|.+.+ -+.+..+.+|..+|.++.|+
T Consensus 27 hsaav~~lk~~~s~r-~~~~Gg~~~k~~L~~i~k--------------------------p~~i~S~~~hespIeSl~f~ 79 (825)
T KOG0267|consen 27 HSAAVGCLKIRKSSR-SLVTGGEDEKVNLWAIGK--------------------------PNAITSLTGHESPIESLTFD 79 (825)
T ss_pred hhhhhceeeeeccce-eeccCCCceeeccccccC--------------------------CchhheeeccCCcceeeecC
Confidence 888999999877777 899999999999999875 24555688999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEecCCceEEeeecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCeEE
Q 009715 289 TDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSG 368 (528)
Q Consensus 289 pdg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~ 368 (528)
++..+|+.|..+|.|++||++..+.++.+.+|...+..|+|+|-+.|.+.|+.|..+++||.+..-|.+.+.+|...|..
T Consensus 80 ~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~ 159 (825)
T KOG0267|consen 80 TSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDV 159 (825)
T ss_pred cchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999988899999999999999
Q ss_pred EEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEEEeecCCCCCCCeecCCCCCccCCceeeeecCCCCce
Q 009715 369 VAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPS 448 (528)
Q Consensus 369 v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~d~~~~~g~~~~~~~ 448 (528)
+.|+| +| .+++++++|..++|||+..|+....|
T Consensus 160 l~lsP-------~G------r~v~~g~ed~tvki~d~~agk~~~ef---------------------------------- 192 (825)
T KOG0267|consen 160 LRLSP-------DG------RWVASGGEDNTVKIWDLTAGKLSKEF---------------------------------- 192 (825)
T ss_pred EeecC-------CC------ceeeccCCcceeeeeccccccccccc----------------------------------
Confidence 99999 99 89999999999999999988766544
Q ss_pred eeecCCCCceEEeecCCCCeEEEEEeCC-e-EEEEECCCeEEEEeCCCCccccCC--Cccce--EEEccCCceEEEeee
Q 009715 449 MRDVPKLSPLVAHRVHTEPLSGLIFTQE-S-VLTVCREGHIKIWMRPGVAESQSS--SSETV--LSTSSKDKPLLSSKV 521 (528)
Q Consensus 449 ~~d~~~~~~~~~~~~h~~~V~~l~~s~d-~-l~t~s~Dg~i~iW~~~~~~~~~~~--~~~~v--l~~spd~~~l~s~~~ 521 (528)
..|++.|..+.|+|. . +++||.|++|++||+++-...... ...+| ++|.||++.+++|-.
T Consensus 193 -------------~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q 258 (825)
T KOG0267|consen 193 -------------KSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQ 258 (825)
T ss_pred -------------ccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCch
Confidence 458999999999995 3 889999999999999865543332 33445 889999999988754
No 109
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.92 E-value=4.7e-23 Score=184.11 Aligned_cols=285 Identities=18% Similarity=0.257 Sum_probs=210.5
Q ss_pred CCCCCeEEEEecCCcEEEEEccccccccccceee---eeeeccCCcccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcC
Q 009715 165 AKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVG---AHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKS 241 (528)
Q Consensus 165 ~~~~~~l~~g~~~G~v~iwd~~~~~~~~~~~~~~---~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~ 241 (528)
...+++++.|..||.|.+||+.....-...-+.. +..-......|+..|..+.|-|-..++|.+++.|.+++|||..
T Consensus 53 ~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtn 132 (397)
T KOG4283|consen 53 LTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTN 132 (397)
T ss_pred cccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccceEEEeecc
Confidence 4578999999999999999997632100000110 0011122335999999999999888899999999999999988
Q ss_pred CCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECC---CCCEEEEEeCCCcEEEEecCCceEEeeec
Q 009715 242 KDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST---DGTYLATVGRDGYLRVFDYSKEQLICGGK 318 (528)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp---dg~~l~s~~~dg~i~vwd~~~~~~~~~~~ 318 (528)
+-.. ...++ ..+.|++-+++| ...++|+|..|-.|++.|+.+|.+-+.+.
T Consensus 133 TlQ~--------------------------a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~Ls 185 (397)
T KOG4283|consen 133 TLQE--------------------------AVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLS 185 (397)
T ss_pred ccee--------------------------eEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeec
Confidence 6221 11111 136788888888 35688999999999999999999999999
Q ss_pred ccCCCeEEEEEcCCCCE-EEEEeCCCcEEEEECCCC-eEEEEe--------------ecCCCCeEEEEEecCCCCCCCCC
Q 009715 319 SYYGALLCCAWSMDGKY-ILTGGEDDLVQVWSMEDR-KVVAWG--------------EGHNSWVSGVAFDSYWSQPNSDG 382 (528)
Q Consensus 319 ~~~~~v~~l~~sp~g~~-l~sg~~dg~v~vwd~~~~-~~~~~~--------------~~h~~~V~~v~f~p~~~~~~~dg 382 (528)
+|.+.|.++.|+|..++ |++|+.||.|++||++.. .+...+ ..|.+.|+.++|.. ||
T Consensus 186 GHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tS-------d~ 258 (397)
T KOG4283|consen 186 GHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTS-------DA 258 (397)
T ss_pred cccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecc-------cc
Confidence 99999999999998775 678999999999999864 233332 25778899999998 99
Q ss_pred CccceeEEEEEEeCCCeEEEEEccCCeEEEEeec---CCCCCCCeecCCCCCccCCceeeeecCCCCceeeecCCCCceE
Q 009715 383 TAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRR---GPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLV 459 (528)
Q Consensus 383 ~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~---~~~~~~~~~s~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~ 459 (528)
.++++++.|.++++|+...|+....-.. ...-..+.+.. +....+..+.+- .++.+.++.+-....+.
T Consensus 259 ------~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~--~~~~s~vfv~~p-~~~~lall~~~sgs~ir 329 (397)
T KOG4283|consen 259 ------RYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHI--QSMDSDVFVLFP-NDGSLALLNLLEGSFVR 329 (397)
T ss_pred ------hhhhhccCccceEEeecccCcccccccccccccccccceEEE--eecccceEEEEe-cCCeEEEEEccCceEEE
Confidence 7999999999999999988764221110 01111122221 122233333222 23778888888889999
Q ss_pred EeecCCCCeEEEEEeCCe--EEEEECCCeEEEEeC
Q 009715 460 AHRVHTEPLSGLIFTQES--VLTVCREGHIKIWMR 492 (528)
Q Consensus 460 ~~~~h~~~V~~l~~s~d~--l~t~s~Dg~i~iW~~ 492 (528)
.+..|-..|.+.++.|+. ..++..|+.|..|-.
T Consensus 330 ~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 330 RLSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred eeecccceeeEEeecCchhhhhccccCCccccccc
Confidence 999998899999999985 999999999999986
No 110
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=2e-23 Score=197.56 Aligned_cols=280 Identities=15% Similarity=0.160 Sum_probs=210.4
Q ss_pred hhhcCCCCCceeeccCCCCCCC-ccccCCcccCCcccCCCCCCcceeeeCCCccEEEEeCCCcEEEE--eCCCCCCC---
Q 009715 91 AKLLGTGNGSRTLGFGGGNGGS-KSISGSSRIGSLGASSSSTSMTNTNFDGKGTYIIFNVGDAIFIS--DLNSQDKD--- 164 (528)
Q Consensus 91 ~~~~~~~~g~~~~sf~gh~~~v-~~v~~s~~~~~~~~s~s~~s~~~~~~~~~g~~~~~~~~~~i~v~--~~~~~~~~--- 164 (528)
-.+|+..+|....+|+|..-.. .++..- ...+++++.. ..-.+-+|+..+...+. .+-.+...
T Consensus 20 ~~~~dl~TGt~~~~ykg~~~a~~~sl~~l--~~~yllsaq~---------~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~ 88 (476)
T KOG0646|consen 20 CIVWDLRTGTSLLQYKGSYLAQAASLTAL--NNEYLLSAQL---------KRPLLHVWEILKKDQVVQYIVLPGPVHALA 88 (476)
T ss_pred eeEEecCCCceeEEecCcccccchhhhhh--chhheeeecc---------cCccccccccCchhhhhhhcccccceeeee
Confidence 5689999999999999873222 111100 0122333331 23355566666543222 11111111
Q ss_pred -CCCCCeEEEEecCCcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCC
Q 009715 165 -AKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKD 243 (528)
Q Consensus 165 -~~~~~~l~~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~ 243 (528)
+++|.+|+.|+..|.||+|.+.+ ..+......|=..|+|+.|+-||. +|++|+.||.|.+|.+..-
T Consensus 89 s~n~G~~l~ag~i~g~lYlWelss------------G~LL~v~~aHYQ~ITcL~fs~dgs-~iiTgskDg~V~vW~l~~l 155 (476)
T KOG0646|consen 89 SSNLGYFLLAGTISGNLYLWELSS------------GILLNVLSAHYQSITCLKFSDDGS-HIITGSKDGAVLVWLLTDL 155 (476)
T ss_pred cCCCceEEEeecccCcEEEEEecc------------ccHHHHHHhhccceeEEEEeCCCc-EEEecCCCccEEEEEEEee
Confidence 78999999999999999999987 222222344888999999999999 9999999999999998641
Q ss_pred CCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCC--CCEEEEEeCCCcEEEEecCCceEEeeecccC
Q 009715 244 GAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTD--GTYLATVGRDGYLRVFDYSKEQLICGGKSYY 321 (528)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spd--g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 321 (528)
-.. .....-.|...|..|+-+|+++...+- ..+|++++.|.++++||+..+.++..+. ..
T Consensus 156 v~a-----------------~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp 217 (476)
T KOG0646|consen 156 VSA-----------------DNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FP 217 (476)
T ss_pred ccc-----------------ccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-cC
Confidence 100 011135789999999999999998763 4689999999999999999999988875 57
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC----------------eEEEEeecCCC--CeEEEEEecCCCCCCCCCC
Q 009715 322 GALLCCAWSMDGKYILTGGEDDLVQVWSMEDR----------------KVVAWGEGHNS--WVSGVAFDSYWSQPNSDGT 383 (528)
Q Consensus 322 ~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~----------------~~~~~~~~h~~--~V~~v~f~p~~~~~~~dg~ 383 (528)
..+.+++.+|-++.+..|+++|.|.+.++..- ..+..+.||.+ .|+|++.+- ||
T Consensus 218 ~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~-------Dg- 289 (476)
T KOG0646|consen 218 SSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAIST-------DG- 289 (476)
T ss_pred CcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEec-------Cc-
Confidence 88999999999999999999999999887432 23456678988 999999999 99
Q ss_pred ccceeEEEEEEeCCCeEEEEEccCCeEEEEee-cCCCCCCCee
Q 009715 384 AETVMYRFGSVGQDTRLLLWDLEMDEIVVPLR-RGPLGGSPTF 425 (528)
Q Consensus 384 ~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~-~~~~~~~~~~ 425 (528)
.+|++|+.||+|+|||+.+.++++++. ...++..+.+
T Consensus 290 -----tlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i 327 (476)
T KOG0646|consen 290 -----TLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQI 327 (476)
T ss_pred -----cEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEe
Confidence 899999999999999999999998887 4455555555
No 111
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.92 E-value=4.7e-24 Score=198.64 Aligned_cols=267 Identities=13% Similarity=0.116 Sum_probs=222.9
Q ss_pred CCCCCeEEEEecCCcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCC
Q 009715 165 AKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDG 244 (528)
Q Consensus 165 ~~~~~~l~~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~ 244 (528)
-++...|++|+.|..|++|++.... ..+.....+..+.|+.++|.+++. .+++++.|+.+++|++..
T Consensus 184 l~~sdtlatgg~Dr~Ik~W~v~~~k----------~~~~~tLaGs~g~it~~d~d~~~~-~~iAas~d~~~r~Wnvd~-- 250 (459)
T KOG0288|consen 184 LRNSDTLATGGSDRIIKLWNVLGEK----------SELISTLAGSLGNITSIDFDSDNK-HVIAASNDKNLRLWNVDS-- 250 (459)
T ss_pred ccCcchhhhcchhhhhhhhhcccch----------hhhhhhhhccCCCcceeeecCCCc-eEEeecCCCceeeeeccc--
Confidence 4566889999999999999986521 112222334667899999999999 888999999999999985
Q ss_pred CCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCCCCEEEEEeCCCcEEEEecCCceEEeeecccCCCe
Q 009715 245 AGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGAL 324 (528)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v 324 (528)
......+.+|++.|+++.|......+++++.|.+|++||+....+...+.. ...+
T Consensus 251 ------------------------~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~-~S~c 305 (459)
T KOG0288|consen 251 ------------------------LRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLP-GSQC 305 (459)
T ss_pred ------------------------hhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccc-cccc
Confidence 345566788999999999998777799999999999999999888776542 3455
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEE
Q 009715 325 LCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWD 404 (528)
Q Consensus 325 ~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd 404 (528)
..|..+ ...+++|-.|+.|++||.+...++.....+. .|+++..++ +| ..|.+++.|.++.+.|
T Consensus 306 nDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~-------~g------~~lLsssRDdtl~viD 369 (459)
T KOG0288|consen 306 NDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSM-------DG------LELLSSSRDDTLKVID 369 (459)
T ss_pred cceEec--ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeecc-------CC------eEEeeecCCCceeeee
Confidence 666655 5568899999999999999999999888666 899999999 99 7899999999999999
Q ss_pred ccCCeEEEEeecC-----CCCCCCeecCCCCCccCCceeeeecCCCCceeeecCCCCceEEeecCCC--CeEEEEEeCC-
Q 009715 405 LEMDEIVVPLRRG-----PLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTE--PLSGLIFTQE- 476 (528)
Q Consensus 405 ~~~~~~~~~~~~~-----~~~~~~~~s~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~--~V~~l~~s~d- 476 (528)
+++.+....+... .....+.|+|++ .+++.|+.++.+.+|++.+.+....+..... .|++++|+|.
T Consensus 370 lRt~eI~~~~sA~g~k~asDwtrvvfSpd~------~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG 443 (459)
T KOG0288|consen 370 LRTKEIRQTFSAEGFKCASDWTRVVFSPDG------SYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSG 443 (459)
T ss_pred cccccEEEEeeccccccccccceeEECCCC------ceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCC
Confidence 9999999888653 345678899987 7889999999999999999988877775444 5999999996
Q ss_pred -eEEEEECCCeEEEEe
Q 009715 477 -SVLTVCREGHIKIWM 491 (528)
Q Consensus 477 -~l~t~s~Dg~i~iW~ 491 (528)
+|++++.++.+++|.
T Consensus 444 ~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 444 SGLLSADKQKAVTLWT 459 (459)
T ss_pred chhhcccCCcceEecC
Confidence 499999999999994
No 112
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.91 E-value=4.1e-23 Score=193.46 Aligned_cols=229 Identities=18% Similarity=0.275 Sum_probs=193.8
Q ss_pred CCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECC
Q 009715 210 NSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST 289 (528)
Q Consensus 210 ~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp 289 (528)
...++++...|... .+++|+.|.++.++|... .+.+..+.+|+..|+.+.|+|
T Consensus 219 ~pgi~ald~~~s~~-~ilTGG~d~~av~~d~~s--------------------------~q~l~~~~Gh~kki~~v~~~~ 271 (506)
T KOG0289|consen 219 TPGITALDIIPSSS-KILTGGEDKTAVLFDKPS--------------------------NQILATLKGHTKKITSVKFHK 271 (506)
T ss_pred CCCeeEEeecCCCC-cceecCCCCceEEEecch--------------------------hhhhhhccCcceEEEEEEecc
Confidence 34678888888845 899999999999999875 356778889999999999999
Q ss_pred CCCEEEEEeCCCcEEEEecCCceEEeeecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeec--CCCCeE
Q 009715 290 DGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEG--HNSWVS 367 (528)
Q Consensus 290 dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~~~~~~~~--h~~~V~ 367 (528)
+...+++++.|..|+||.............|..+|+.+..+|.|.||++++.|+...+.|++++.++..... ..-.++
T Consensus 272 ~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~t 351 (506)
T KOG0289|consen 272 DLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYT 351 (506)
T ss_pred chhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeE
Confidence 999999999999999999988888788889999999999999999999999999999999999998877663 234589
Q ss_pred EEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEEEeecCCCCCCCeecCCCCCccCCceeeeecCCCCc
Q 009715 368 GVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAP 447 (528)
Q Consensus 368 ~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~d~~~~~g~~~~~~ 447 (528)
+.+|+| || .+|.+|..|+.|+|||+.++..+.
T Consensus 352 s~~fHp-------Dg------Lifgtgt~d~~vkiwdlks~~~~a----------------------------------- 383 (506)
T KOG0289|consen 352 SAAFHP-------DG------LIFGTGTPDGVVKIWDLKSQTNVA----------------------------------- 383 (506)
T ss_pred EeeEcC-------Cc------eEEeccCCCceEEEEEcCCccccc-----------------------------------
Confidence 999999 99 899999999999999998766432
Q ss_pred eeeecCCCCceEEeecCCCCeEEEEEeCCe--EEEEECCCeEEEEeCCCCccccC---CCccce--EEEccCCceEEEee
Q 009715 448 SMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWMRPGVAESQS---SSSETV--LSTSSKDKPLLSSK 520 (528)
Q Consensus 448 ~~~d~~~~~~~~~~~~h~~~V~~l~~s~d~--l~t~s~Dg~i~iW~~~~~~~~~~---~~~~~v--l~~spd~~~l~s~~ 520 (528)
.|.+|+++|..++|+.++ |++++.|+.|++||+...+.... .....+ +.|.+.|++|++++
T Consensus 384 ------------~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g 451 (506)
T KOG0289|consen 384 ------------KFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAG 451 (506)
T ss_pred ------------cCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeec
Confidence 345799999999999985 99999999999999876552221 222234 88899999999885
Q ss_pred eeccc
Q 009715 521 VVTSS 525 (528)
Q Consensus 521 ~~gs~ 525 (528)
.+-.+
T Consensus 452 ~~l~V 456 (506)
T KOG0289|consen 452 SDLQV 456 (506)
T ss_pred ceeEE
Confidence 54333
No 113
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.91 E-value=1.2e-23 Score=199.96 Aligned_cols=270 Identities=20% Similarity=0.211 Sum_probs=211.6
Q ss_pred ccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEee--cCCCeEEE
Q 009715 208 VNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHI--CQGSINSI 285 (528)
Q Consensus 208 ~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~l 285 (528)
.|..-|.++.++...+ .++||+. |.|+|||+...+.. .++..+.. ....|+++
T Consensus 417 ~HGEvVcAvtIS~~tr-hVyTgGk-gcVKVWdis~pg~k-----------------------~PvsqLdcl~rdnyiRSc 471 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTR-HVYTGGK-GCVKVWDISQPGNK-----------------------SPVSQLDCLNRDNYIRSC 471 (705)
T ss_pred ccCcEEEEEEecCCcc-eeEecCC-CeEEEeeccCCCCC-----------------------CccccccccCcccceeee
Confidence 3777888888888777 7888875 89999999764321 11211111 13678899
Q ss_pred EECCCCCEEEEEeCCCcEEEEecCCceEEe--eecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCC
Q 009715 286 AFSTDGTYLATVGRDGYLRVFDYSKEQLIC--GGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHN 363 (528)
Q Consensus 286 ~~spdg~~l~s~~~dg~i~vwd~~~~~~~~--~~~~~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~~~~~~~~h~ 363 (528)
.+.|||+.|++|+.-.++.|||+....+.. .+..-.-.+..++.+||.+..++++.||.|.|||+.....++.|+||.
T Consensus 472 kL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGht 551 (705)
T KOG0639|consen 472 KLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHT 551 (705)
T ss_pred EecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCC
Confidence 999999999999999999999998665432 233333457789999999999999999999999999999999999999
Q ss_pred CCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEEEeecCCCCCCCeecCCCCCccCCceeeeecC
Q 009715 364 SWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTL 443 (528)
Q Consensus 364 ~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~d~~~~~g~~ 443 (528)
+.+.||..++ || +.|.+|+.|.+||-||+++++.+........+.++-.++.+ ..+.+|-.
T Consensus 552 DGascIdis~-------dG------tklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~------dWlavGMe 612 (705)
T KOG0639|consen 552 DGASCIDISK-------DG------TKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTG------DWLAVGME 612 (705)
T ss_pred CCceeEEecC-------CC------ceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCc------cceeeecc
Confidence 9999999999 99 89999999999999999999887766665566666665554 33456666
Q ss_pred CCCceeeecCCCCceEEeecCCCCeEEEEEeCC--eEEEEECCCeEEEEeCCCCc-cccCCCccce--EEEccCCceEEE
Q 009715 444 QPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE--SVLTVCREGHIKIWMRPGVA-ESQSSSSETV--LSTSSKDKPLLS 518 (528)
Q Consensus 444 ~~~~~~~d~~~~~~~~~~~~h~~~V~~l~~s~d--~l~t~s~Dg~i~iW~~~~~~-~~~~~~~~~v--l~~spd~~~l~s 518 (528)
.+.+.+......+.. .+..|+.-|.+|.|.+- .+++.+.|..+..|..+-+. ..+......| ..+|.|+|+|++
T Consensus 613 ns~vevlh~skp~ky-qlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE~SsVlsCDIS~ddkyIVT 691 (705)
T KOG0639|consen 613 NSNVEVLHTSKPEKY-QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISFDDKYIVT 691 (705)
T ss_pred cCcEEEEecCCccce-eecccccEEEEEEecccCceeeecCchhhhhhccCccccceeeccccCcceeeeeccCceEEEe
Confidence 665555555544444 34468999999999995 49999999999999988765 4455666677 556999999999
Q ss_pred eeee
Q 009715 519 SKVV 522 (528)
Q Consensus 519 ~~~~ 522 (528)
|+-+
T Consensus 692 GSGd 695 (705)
T KOG0639|consen 692 GSGD 695 (705)
T ss_pred cCCC
Confidence 8765
No 114
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=9e-22 Score=178.32 Aligned_cols=265 Identities=14% Similarity=0.145 Sum_probs=207.6
Q ss_pred cCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEEC
Q 009715 209 NNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFS 288 (528)
Q Consensus 209 h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 288 (528)
-...|+++.|+++|. ++++++.|.++++||...+ ..++.+..+.-.|..++|.
T Consensus 13 ~~~~i~sl~fs~~G~-~litss~dDsl~LYd~~~g--------------------------~~~~ti~skkyG~~~~~Ft 65 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGL-LLITSSEDDSLRLYDSLSG--------------------------KQVKTINSKKYGVDLACFT 65 (311)
T ss_pred CCCceeEEEecCCCC-EEEEecCCCeEEEEEcCCC--------------------------ceeeEeecccccccEEEEe
Confidence 467899999999999 8999999999999998762 2344444445677788887
Q ss_pred CCCCEEEEEeC--CCcEEEEecCCceEEeeecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCe
Q 009715 289 TDGTYLATVGR--DGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWV 366 (528)
Q Consensus 289 pdg~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~~~~~~~~h~~~V 366 (528)
...+.++.++. |..||..++.+.+.++.+.+|...|..|+.+|-+..+++++.|++|++||++..++...+.... -
T Consensus 66 h~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~--~ 143 (311)
T KOG1446|consen 66 HHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSG--R 143 (311)
T ss_pred cCCceEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCC--C
Confidence 76666666665 8899999999999999999999999999999999999999999999999999888876665333 3
Q ss_pred EEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCC--eEEEEeecC----CCCCCCeecCCCCCccCCceeee
Q 009715 367 SGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMD--EIVVPLRRG----PLGGSPTFSTGSQSAHWDNVCPV 440 (528)
Q Consensus 367 ~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~--~~~~~~~~~----~~~~~~~~s~~~~~~~~d~~~~~ 440 (528)
..++|+| .| .++|++.....|+|||+++- .+-..+... ..-..+.|+++| ..+.+
T Consensus 144 pi~AfDp-------~G------LifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dG------K~iLl 204 (311)
T KOG1446|consen 144 PIAAFDP-------EG------LIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDG------KSILL 204 (311)
T ss_pred cceeECC-------CC------cEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCC------CEEEE
Confidence 3479999 99 67777777779999999874 233333322 334578899998 66778
Q ss_pred ecCCCCceeeecCCCCceEEeecCCCCe---EEEEEeCCe--EEEEECCCeEEEEeCCCCccccC--C-Cccce--EEEc
Q 009715 441 GTLQPAPSMRDVPKLSPLVAHRVHTEPL---SGLIFTQES--VLTVCREGHIKIWMRPGVAESQS--S-SSETV--LSTS 510 (528)
Q Consensus 441 g~~~~~~~~~d~~~~~~~~~~~~h~~~V---~~l~~s~d~--l~t~s~Dg~i~iW~~~~~~~~~~--~-~~~~v--l~~s 510 (528)
.+..+.+.+.|.-.+..+..+.++...- .+..|+||+ |++++.||+|.+|++.++..... + +...+ +.|.
T Consensus 205 sT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fn 284 (311)
T KOG1446|consen 205 STNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFN 284 (311)
T ss_pred EeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccC
Confidence 8888888999988888888888776543 577899985 89999999999999988764332 1 22222 7778
Q ss_pred cCCceEEEeee
Q 009715 511 SKDKPLLSSKV 521 (528)
Q Consensus 511 pd~~~l~s~~~ 521 (528)
|.--+++++..
T Consensus 285 P~~~mf~sa~s 295 (311)
T KOG1446|consen 285 PRYAMFVSASS 295 (311)
T ss_pred CceeeeeecCc
Confidence 87777776643
No 115
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.1e-22 Score=192.61 Aligned_cols=202 Identities=20% Similarity=0.294 Sum_probs=173.4
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEEEecCCceEEeeecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC-------
Q 009715 279 QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSME------- 351 (528)
Q Consensus 279 ~~~v~~l~~spdg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~------- 351 (528)
.+.|.+++-+|+|.+|+.|+..|.|++|.+.+|.++..+..|...|+|+.|+-||.+|++|+.||.|.+|++-
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~ 160 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADN 160 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeeccccc
Confidence 3789999999999999999899999999999999999999999999999999999999999999999999863
Q ss_pred --CCeEEEEeecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEEEeecCCCCCCCeecCCC
Q 009715 352 --DRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGS 429 (528)
Q Consensus 352 --~~~~~~~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~s~~~ 429 (528)
+-++++.+..|.-+|+++...+ .| ...+|+|++.|.++++||+..+..+..+.....+.+++..+..
T Consensus 161 ~~~~~p~~~f~~HtlsITDl~ig~-------Gg----~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae 229 (476)
T KOG0646|consen 161 DHSVKPLHIFSDHTLSITDLQIGS-------GG----TNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAE 229 (476)
T ss_pred CCCccceeeeccCcceeEEEEecC-------CC----ccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccc
Confidence 2467888999999999999876 33 2258999999999999999999999999988888888887776
Q ss_pred CCccCCceeeeecCCCCceeeecCC----------------CCceEEeecCCC--CeEEEEEeCCe--EEEEECCCeEEE
Q 009715 430 QSAHWDNVCPVGTLQPAPSMRDVPK----------------LSPLVAHRVHTE--PLSGLIFTQES--VLTVCREGHIKI 489 (528)
Q Consensus 430 ~~~~~d~~~~~g~~~~~~~~~d~~~----------------~~~~~~~~~h~~--~V~~l~~s~d~--l~t~s~Dg~i~i 489 (528)
..+.+|+.++.+.+.++-. ...+..+.+|.+ .|+|++.+-|+ |++|+.||.|+|
T Consensus 230 ------~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~Vcv 303 (476)
T KOG0646|consen 230 ------RVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCV 303 (476)
T ss_pred ------cEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEE
Confidence 4455666666555544322 235667789998 99999999986 999999999999
Q ss_pred EeCCCCcc
Q 009715 490 WMRPGVAE 497 (528)
Q Consensus 490 W~~~~~~~ 497 (528)
||+.+.+.
T Consensus 304 Wdi~S~Q~ 311 (476)
T KOG0646|consen 304 WDIYSKQC 311 (476)
T ss_pred EecchHHH
Confidence 99988774
No 116
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=5.8e-23 Score=202.75 Aligned_cols=256 Identities=21% Similarity=0.289 Sum_probs=208.0
Q ss_pred hhhhcCCCCCceeeccCCCCCCCccccCCcccCCcccCCCCCCcceeeeCCCccEEEEeCCCcEEEEeCCC-CCCC----
Q 009715 90 AAKLLGTGNGSRTLGFGGGNGGSKSISGSSRIGSLGASSSSTSMTNTNFDGKGTYIIFNVGDAIFISDLNS-QDKD---- 164 (528)
Q Consensus 90 ~~~~~~~~~g~~~~sf~gh~~~v~~v~~s~~~~~~~~s~s~~s~~~~~~~~~g~~~~~~~~~~i~v~~~~~-~~~~---- 164 (528)
..-+|...++....-+.-+...|++|.+++ .|.+++.+.. +|.+.+|+......+..+.. +...
T Consensus 198 ~vylW~~~s~~v~~l~~~~~~~vtSv~ws~-~G~~LavG~~----------~g~v~iwD~~~~k~~~~~~~~h~~rvg~l 266 (484)
T KOG0305|consen 198 SVYLWSASSGSVTELCSFGEELVTSVKWSP-DGSHLAVGTS----------DGTVQIWDVKEQKKTRTLRGSHASRVGSL 266 (484)
T ss_pred eEEEEecCCCceEEeEecCCCceEEEEECC-CCCEEEEeec----------CCeEEEEehhhccccccccCCcCceeEEE
Confidence 556788888886655655588888888888 4444444443 67777777766665555555 2222
Q ss_pred CCCCCeEEEEecCCcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCC
Q 009715 165 AKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDG 244 (528)
Q Consensus 165 ~~~~~~l~~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~ 244 (528)
.-....+.+|..+|.|..+|++..... .. ....|...|..++|++++. +||+|+.|+.+.|||...
T Consensus 267 aW~~~~lssGsr~~~I~~~dvR~~~~~-----~~------~~~~H~qeVCgLkws~d~~-~lASGgnDN~~~Iwd~~~-- 332 (484)
T KOG0305|consen 267 AWNSSVLSSGSRDGKILNHDVRISQHV-----VS------TLQGHRQEVCGLKWSPDGN-QLASGGNDNVVFIWDGLS-- 332 (484)
T ss_pred eccCceEEEecCCCcEEEEEEecchhh-----hh------hhhcccceeeeeEECCCCC-eeccCCCccceEeccCCC--
Confidence 556889999999999999999873211 11 1334999999999999999 999999999999999843
Q ss_pred CCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECC-CCCEEEEEe--CCCcEEEEecCCceEEeeecccC
Q 009715 245 AGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST-DGTYLATVG--RDGYLRVFDYSKEQLICGGKSYY 321 (528)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp-dg~~l~s~~--~dg~i~vwd~~~~~~~~~~~~~~ 321 (528)
..+...+..|.++|.+++|+| ....||+|+ .|+.|++||..+++.+..+. -.
T Consensus 333 ------------------------~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tg 387 (484)
T KOG0305|consen 333 ------------------------PEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD-TG 387 (484)
T ss_pred ------------------------ccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccc-cC
Confidence 357788889999999999999 778899975 79999999999999988776 46
Q ss_pred CCeEEEEEcCCCCEEEE--EeCCCcEEEEECCCCeEEEEeecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCe
Q 009715 322 GALLCCAWSMDGKYILT--GGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTR 399 (528)
Q Consensus 322 ~~v~~l~~sp~g~~l~s--g~~dg~v~vwd~~~~~~~~~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~ 399 (528)
..|..|.|++..+-|++ |..++.|.||+..+.+.+..+.+|...|..++++| || ..+++++.|.+
T Consensus 388 sQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SP-------dg------~~i~t~a~DET 454 (484)
T KOG0305|consen 388 SQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSP-------DG------ETIVTGAADET 454 (484)
T ss_pred CceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECC-------CC------CEEEEecccCc
Confidence 78999999998877765 44578999999999999999999999999999999 99 79999999999
Q ss_pred EEEEEccCC
Q 009715 400 LLLWDLEMD 408 (528)
Q Consensus 400 i~lwd~~~~ 408 (528)
+++|++-..
T Consensus 455 lrfw~~f~~ 463 (484)
T KOG0305|consen 455 LRFWNLFDE 463 (484)
T ss_pred EEeccccCC
Confidence 999998664
No 117
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.91 E-value=1.6e-22 Score=180.66 Aligned_cols=232 Identities=18% Similarity=0.201 Sum_probs=178.5
Q ss_pred ccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEE
Q 009715 208 VNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAF 287 (528)
Q Consensus 208 ~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 287 (528)
.|.+.|+.+.+.+...+++++|+.||.|.+||++.....+...-..+. ...+ ....-.+|.-.|..+.|
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~--~c~v---------~~~h~~~Hky~iss~~W 109 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKH--KCIV---------AKQHENGHKYAISSAIW 109 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceehe--eeec---------cccCCccceeeeeeeEE
Confidence 499999999999865559999999999999999863211111000000 0000 01112457788999999
Q ss_pred CC-CCCEEEEEeCCCcEEEEecCCceEEeeecccCCCeEEEEEcCCC---CEEEEEeCCCcEEEEECCCCeEEEEeecCC
Q 009715 288 ST-DGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDG---KYILTGGEDDLVQVWSMEDRKVVAWGEGHN 363 (528)
Q Consensus 288 sp-dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~g---~~l~sg~~dg~v~vwd~~~~~~~~~~~~h~ 363 (528)
-| |.-.+.+++.|.+++|||..+-+....++ ..+.|..-+|+|-. .++|+|..|-.|++.|+.+|.+-+++.||.
T Consensus 110 yP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr 188 (397)
T KOG4283|consen 110 YPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHR 188 (397)
T ss_pred eeecCceeecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeecccc
Confidence 99 77789999999999999999999888876 67889999999943 478888899999999999999999999999
Q ss_pred CCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCC-eEEEEeecCCCCCCCeecCCCCCccCCceeeeec
Q 009715 364 SWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMD-EIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGT 442 (528)
Q Consensus 364 ~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~-~~~~~~~~~~~~~~~~~s~~~~~~~~d~~~~~g~ 442 (528)
..|.+|.|+| ..+ ..|++|+.|+.|++||++.. .+...+......
T Consensus 189 ~~vlaV~Wsp-------~~e-----~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k---------------------- 234 (397)
T KOG4283|consen 189 DGVLAVEWSP-------SSE-----WVLATGSADGAIRLWDIRRASGCFRVLDQHNTK---------------------- 234 (397)
T ss_pred CceEEEEecc-------Cce-----eEEEecCCCceEEEEEeecccceeEEeecccCc----------------------
Confidence 9999999999 331 78999999999999999875 455544432110
Q ss_pred CCCCceeeecCCCCceEEeecCCCCeEEEEEeCCe--EEEEECCCeEEEEeCCCCc
Q 009715 443 LQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWMRPGVA 496 (528)
Q Consensus 443 ~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~~s~d~--l~t~s~Dg~i~iW~~~~~~ 496 (528)
....+..-..|.+.|.+++|+.|+ +++++.|..+++|+...+.
T Consensus 235 -----------~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ 279 (397)
T KOG4283|consen 235 -----------RPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGR 279 (397)
T ss_pred -----------cCccccccccccceeeeeeecccchhhhhccCccceEEeecccCc
Confidence 011122234789999999999985 9999999999999987765
No 118
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=2.6e-22 Score=196.84 Aligned_cols=244 Identities=15% Similarity=0.171 Sum_probs=187.9
Q ss_pred CCccEEEEeCCCcE------EEEeCCCC-CCC-----CCCCCeEEEEecCCcEEEEEccccccccccceeeeeeeccCCc
Q 009715 140 GKGTYIIFNVGDAI------FISDLNSQ-DKD-----AKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGS 207 (528)
Q Consensus 140 ~~g~~~~~~~~~~i------~v~~~~~~-~~~-----~~~~~~l~~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 207 (528)
.||.++.|+.+..- ++..++.+ ++. ..+++.|+.++.|-+|++|+...+. .. ......
T Consensus 45 RDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~-~~---------c~stir 114 (735)
T KOG0308|consen 45 RDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDN-TF---------CMSTIR 114 (735)
T ss_pred CCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCc-ch---------hHhhhh
Confidence 48888888765432 22222211 111 5678899999999999999987632 00 111122
Q ss_pred ccCCceeEEEE-eeCCCcEEEEEeCCceEEEEEcCCCCC-CCCccccccccceeEEeccCCCCCCCeEEEe-ecCCCeEE
Q 009715 208 VNNSRCTSVTW-VPGGDGAFVVGHADGNLYVYEKSKDGA-GDSSFPVIKDQTQFSVAHPRYSKSNPIARWH-ICQGSINS 284 (528)
Q Consensus 208 ~h~~~v~~l~~-~p~g~~~l~tg~~dg~v~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~ 284 (528)
.|.+-|.|+++ -++.. ++|+|+-|+.|++||++.... ....+. .-++..+- ++..+|++
T Consensus 115 ~H~DYVkcla~~ak~~~-lvaSgGLD~~IflWDin~~~~~l~~s~n-----------------~~t~~sl~sG~k~siYS 176 (735)
T KOG0308|consen 115 THKDYVKCLAYIAKNNE-LVASGGLDRKIFLWDINTGTATLVASFN-----------------NVTVNSLGSGPKDSIYS 176 (735)
T ss_pred cccchheeeeecccCce-eEEecCCCccEEEEEccCcchhhhhhcc-----------------ccccccCCCCCccceee
Confidence 39999999999 66666 999999999999999986422 111111 11111112 67789999
Q ss_pred EEECCCCCEEEEEeCCCcEEEEecCCceEEeeecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCC
Q 009715 285 IAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNS 364 (528)
Q Consensus 285 l~~spdg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~~~~~~~~h~~ 364 (528)
++.++.|..|++|+..+.|++||.++.+.+..+++|...|.++..++||..+++++.||+|++||+...+|+.++..|..
T Consensus 177 LA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e 256 (735)
T KOG0308|consen 177 LAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKE 256 (735)
T ss_pred eecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccC-CeEEEEeecCCCCCCCe
Q 009715 365 WVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEM-DEIVVPLRRGPLGGSPT 424 (528)
Q Consensus 365 ~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~-~~~~~~~~~~~~~~~~~ 424 (528)
.|.++..+| += ..+.+|+.|+.|..-|+++ .++....+...++..+.
T Consensus 257 ~VWaL~~~~-------sf------~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~ 304 (735)
T KOG0308|consen 257 GVWALQSSP-------SF------THVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLH 304 (735)
T ss_pred ceEEEeeCC-------Cc------ceEEecCCCCcEEecccCCchhheEeecCCCchhhhh
Confidence 999999988 54 6899999999999999998 44444444444444333
No 119
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.90 E-value=8.1e-23 Score=195.20 Aligned_cols=235 Identities=19% Similarity=0.307 Sum_probs=177.0
Q ss_pred cCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEEC
Q 009715 209 NNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFS 288 (528)
Q Consensus 209 h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 288 (528)
|...|.++++.|.|- .|++|+.|-+|++||+.........|..+.. .....|++++|+
T Consensus 166 gtk~Vsal~~Dp~Ga-R~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P---------------------~E~h~i~sl~ys 223 (641)
T KOG0772|consen 166 GTKIVSALAVDPSGA-RFVSGSLDYTVKFWDFQGMDASMRSFRQLQP---------------------CETHQINSLQYS 223 (641)
T ss_pred CceEEEEeeecCCCc-eeeeccccceEEEEecccccccchhhhccCc---------------------ccccccceeeec
Confidence 788999999999999 9999999999999999743222111111111 113679999999
Q ss_pred CCCCEEEEEeCCCcEEEEecCCceEEe------------eecccCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCe-
Q 009715 289 TDGTYLATVGRDGYLRVFDYSKEQLIC------------GGKSYYGALLCCAWSMDGK-YILTGGEDDLVQVWSMEDRK- 354 (528)
Q Consensus 289 pdg~~l~s~~~dg~i~vwd~~~~~~~~------------~~~~~~~~v~~l~~sp~g~-~l~sg~~dg~v~vwd~~~~~- 354 (528)
+.|..|++.+.....+|+|-+-.+... .-++|...++|.+|+|+.+ .+++++.|++++|||++..+
T Consensus 224 ~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~ 303 (641)
T KOG0772|consen 224 VTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKS 303 (641)
T ss_pred CCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchh
Confidence 999999999989999999987443332 2357888999999999664 78899999999999998743
Q ss_pred EEEEee-----cCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEEEeecCCCCCCCeecCCC
Q 009715 355 VVAWGE-----GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGS 429 (528)
Q Consensus 355 ~~~~~~-----~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~s~~~ 429 (528)
.+..++ +-.-.++..+|+| || .+|++|..||.|.+||.........+
T Consensus 304 q~qVik~k~~~g~Rv~~tsC~~nr-------dg------~~iAagc~DGSIQ~W~~~~~~v~p~~--------------- 355 (641)
T KOG0772|consen 304 QLQVIKTKPAGGKRVPVTSCAWNR-------DG------KLIAAGCLDGSIQIWDKGSRTVRPVM--------------- 355 (641)
T ss_pred heeEEeeccCCCcccCceeeecCC-------Cc------chhhhcccCCceeeeecCCcccccce---------------
Confidence 233332 3445789999999 99 78999999999999998543321111
Q ss_pred CCccCCceeeeecCCCCceeeecCCCCceEEeecCCC--CeEEEEEeCCe--EEEEECCCeEEEEeCCCCccccC-----
Q 009715 430 QSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTE--PLSGLIFTQES--VLTVCREGHIKIWMRPGVAESQS----- 500 (528)
Q Consensus 430 ~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~--~V~~l~~s~d~--l~t~s~Dg~i~iW~~~~~~~~~~----- 500 (528)
..-..|.. .|++|.|++|+ |++-+.|+++++||+..-++.+.
T Consensus 356 -----------------------------~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL 406 (641)
T KOG0772|consen 356 -----------------------------KVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGL 406 (641)
T ss_pred -----------------------------EeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCC
Confidence 11235666 89999999986 99999999999999875443222
Q ss_pred --CCccceEEEccCCceEEEeeee
Q 009715 501 --SSSETVLSTSSKDKPLLSSKVV 522 (528)
Q Consensus 501 --~~~~~vl~~spd~~~l~s~~~~ 522 (528)
....+-..||||.+.|++|+..
T Consensus 407 ~t~~~~tdc~FSPd~kli~TGtS~ 430 (641)
T KOG0772|consen 407 PTPFPGTDCCFSPDDKLILTGTSA 430 (641)
T ss_pred CccCCCCccccCCCceEEEecccc
Confidence 1223338999999999999654
No 120
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=8.8e-23 Score=183.99 Aligned_cols=206 Identities=18% Similarity=0.296 Sum_probs=179.4
Q ss_pred ccCCcccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCe
Q 009715 203 NKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSI 282 (528)
Q Consensus 203 ~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 282 (528)
.++..+|++.|+.++-....+ ++.+++.|.+.+||.+++ ...+..+.+|.+.|
T Consensus 141 vre~~GHkDGiW~Vaa~~tqp-i~gtASADhTA~iWs~Es--------------------------g~CL~~Y~GH~GSV 193 (481)
T KOG0300|consen 141 VRELEGHKDGIWHVAADSTQP-ICGTASADHTARIWSLES--------------------------GACLATYTGHTGSV 193 (481)
T ss_pred hhhhcccccceeeehhhcCCc-ceeecccccceeEEeecc--------------------------ccceeeecccccce
Confidence 334456999999999988888 999999999999999986 35677889999999
Q ss_pred EEEEECCCCCEEEEEeCCCcEEEEecC------C----------------------------------ceEEeeecccCC
Q 009715 283 NSIAFSTDGTYLATVGRDGYLRVFDYS------K----------------------------------EQLICGGKSYYG 322 (528)
Q Consensus 283 ~~l~~spdg~~l~s~~~dg~i~vwd~~------~----------------------------------~~~~~~~~~~~~ 322 (528)
++|+|++.+.++++++.|++.+||... . .-++..+.+|.+
T Consensus 194 Nsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~ 273 (481)
T KOG0300|consen 194 NSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRA 273 (481)
T ss_pred eeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeecccc
Confidence 999999999999999999999999721 0 013456788999
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEE
Q 009715 323 ALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLL 402 (528)
Q Consensus 323 ~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~l 402 (528)
.|.+..|-..|+.+++++.|.+..+||+++++++..+.||....+.++-+| .- +++++.+.|.+.++
T Consensus 274 vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHp-------tQ------rLVvTsSrDtTFRL 340 (481)
T KOG0300|consen 274 VVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHP-------TQ------RLVVTSSRDTTFRL 340 (481)
T ss_pred ceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCC-------cc------eEEEEeccCceeEe
Confidence 999999999999999999999999999999999999999999999999988 65 78999999999999
Q ss_pred EEccCCeEEEEeecCCCCCCCeecCCCCCccCCceeeeecCCCCceeeecCCCCceEEeecCCCCeEEEEEeCC-eEEEE
Q 009715 403 WDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE-SVLTV 481 (528)
Q Consensus 403 wd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~~s~d-~l~t~ 481 (528)
||++.. + ..+..|++|.+.|+++.|..| .++++
T Consensus 341 WDFRea--I--------------------------------------------~sV~VFQGHtdtVTS~vF~~dd~vVSg 374 (481)
T KOG0300|consen 341 WDFREA--I--------------------------------------------QSVAVFQGHTDTVTSVVFNTDDRVVSG 374 (481)
T ss_pred ccchhh--c--------------------------------------------ceeeeecccccceeEEEEecCCceeec
Confidence 999832 2 133467899999999999986 59999
Q ss_pred ECCCeEEEEeCCC
Q 009715 482 CREGHIKIWMRPG 494 (528)
Q Consensus 482 s~Dg~i~iW~~~~ 494 (528)
+.|.+|+|||+..
T Consensus 375 SDDrTvKvWdLrN 387 (481)
T KOG0300|consen 375 SDDRTVKVWDLRN 387 (481)
T ss_pred CCCceEEEeeecc
Confidence 9999999999764
No 121
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.90 E-value=1.8e-22 Score=186.11 Aligned_cols=205 Identities=15% Similarity=0.293 Sum_probs=159.0
Q ss_pred CCCeEEEEecCCcEEEEEccccccccccc------eeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeCCceEEEEEc
Q 009715 167 DGHDLLIGLNSGDVYSVSLRQQLQDVGKK------LVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEK 240 (528)
Q Consensus 167 ~~~~l~~g~~~G~v~iwd~~~~~~~~~~~------~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~ 240 (528)
+..+.++-+..|+|+|||+...++..... ......|. ...|...=..|+|+|-....|++|..-+.|++|..
T Consensus 164 ~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t--~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~ 241 (440)
T KOG0302|consen 164 NEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFT--FNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEP 241 (440)
T ss_pred CcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEE--ecccCccceeeecccccccccccCccccceEeeee
Confidence 44556677788999999998754332111 00011111 22488888999999965556999988899999998
Q ss_pred CCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECC-CCCEEEEEeCCCcEEEEecCCc---eEEee
Q 009715 241 SKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST-DGTYLATVGRDGYLRVFDYSKE---QLICG 316 (528)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp-dg~~l~s~~~dg~i~vwd~~~~---~~~~~ 316 (528)
.++. -.. .. .-+.+|+.+|-.++||| ....|++|+.||.|+|||++.+ .++..
T Consensus 242 ~~g~-W~v-------------------d~---~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~ 298 (440)
T KOG0302|consen 242 STGS-WKV-------------------DQ---RPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST 298 (440)
T ss_pred ccCc-eee-------------------cC---ccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe
Confidence 7622 100 01 11344889999999999 5678999999999999999987 34444
Q ss_pred ecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC---CeEEEEeecCCCCeEEEEEecCCCCCCCCCCccceeEEEEE
Q 009715 317 GKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMED---RKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGS 393 (528)
Q Consensus 317 ~~~~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~---~~~~~~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s 393 (528)
+.|.+.|+.|.|+.+-.+||+|+.||.++|||+++ ++++..++-|..+|++|.|+|+ +. ..|++
T Consensus 299 -kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~------e~------s~iaa 365 (440)
T KOG0302|consen 299 -KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPH------ED------SVIAA 365 (440)
T ss_pred -eccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccc------cC------ceEEe
Confidence 78999999999999888999999999999999987 5789999999999999999993 33 58999
Q ss_pred EeCCCeEEEEEccCCe
Q 009715 394 VGQDTRLLLWDLEMDE 409 (528)
Q Consensus 394 ~s~D~~i~lwd~~~~~ 409 (528)
++.|.+|.|||+....
T Consensus 366 sg~D~QitiWDlsvE~ 381 (440)
T KOG0302|consen 366 SGEDNQITIWDLSVEA 381 (440)
T ss_pred ccCCCcEEEEEeeccC
Confidence 9999999999997654
No 122
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=1e-23 Score=208.89 Aligned_cols=212 Identities=20% Similarity=0.278 Sum_probs=179.9
Q ss_pred CCCCeEEEEecCCcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCC
Q 009715 166 KDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGA 245 (528)
Q Consensus 166 ~~~~~l~~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~ 245 (528)
...+.+++|+.+-.+-+|.+.... .+ -....|..+|.++.|++... +|++|..+|+|++||+..
T Consensus 38 ~s~r~~~~Gg~~~k~~L~~i~kp~-----~i-------~S~~~hespIeSl~f~~~E~-LlaagsasgtiK~wDlee--- 101 (825)
T KOG0267|consen 38 KSSRSLVTGGEDEKVNLWAIGKPN-----AI-------TSLTGHESPIESLTFDTSER-LLAAGSASGTIKVWDLEE--- 101 (825)
T ss_pred ccceeeccCCCceeeccccccCCc-----hh-------heeeccCCcceeeecCcchh-hhcccccCCceeeeehhh---
Confidence 456788899998888899876511 01 11345999999999999988 999999999999999985
Q ss_pred CCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCCCCEEEEEeCCCcEEEEecCCceEEeeecccCCCeE
Q 009715 246 GDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALL 325 (528)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~ 325 (528)
...++.+.+|...+..+.|+|-+.+++.++.|+.+++||.+...+.+.+++|...+.
T Consensus 102 -----------------------Ak~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~ 158 (825)
T KOG0267|consen 102 -----------------------AKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVD 158 (825)
T ss_pred -----------------------hhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeE
Confidence 245667778889999999999999999999999999999998889999999999999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEc
Q 009715 326 CCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDL 405 (528)
Q Consensus 326 ~l~~sp~g~~l~sg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~ 405 (528)
++.|+|+|++++++++|..++|||+..|+.+..|..|...|..+.|+| .. .++++|+.|++|++||+
T Consensus 159 ~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp-------~e------~Lla~Gs~d~tv~f~dl 225 (825)
T KOG0267|consen 159 VLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHP-------LE------VLLAPGSSDRTVRFWDL 225 (825)
T ss_pred EEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCc-------hh------hhhccCCCCceeeeecc
Confidence 999999999999999999999999999999999999999999999999 55 68999999999999999
Q ss_pred cCCeEEEEeecC-CCCCCCeecCCC
Q 009715 406 EMDEIVVPLRRG-PLGGSPTFSTGS 429 (528)
Q Consensus 406 ~~~~~~~~~~~~-~~~~~~~~s~~~ 429 (528)
++-+.+...... ..+.+..|.+++
T Consensus 226 etfe~I~s~~~~~~~v~~~~fn~~~ 250 (825)
T KOG0267|consen 226 ETFEVISSGKPETDGVRSLAFNPDG 250 (825)
T ss_pred ceeEEeeccCCccCCceeeeecCCc
Confidence 987776554432 233344444443
No 123
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.89 E-value=4.6e-22 Score=187.95 Aligned_cols=245 Identities=20% Similarity=0.237 Sum_probs=193.7
Q ss_pred cCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEE-eecCCCeEEEEE
Q 009715 209 NNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARW-HICQGSINSIAF 287 (528)
Q Consensus 209 h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~ 287 (528)
|.-+|.|++++|++. +.++++.||+|.-|++.++.......+.-.. ......+.+.- ..|...|.+++.
T Consensus 141 H~~s~~~vals~d~~-~~fsask~g~i~kw~v~tgk~~~~i~~~~ev---------~k~~~~~~k~~r~~h~keil~~av 210 (479)
T KOG0299|consen 141 HQLSVTSVALSPDDK-RVFSASKDGTILKWDVLTGKKDRYIIERDEV---------LKSHGNPLKESRKGHVKEILTLAV 210 (479)
T ss_pred ccCcceEEEeecccc-ceeecCCCcceeeeehhcCcccccccccchh---------hhhccCCCCcccccccceeEEEEE
Confidence 899999999999999 9999999999999999874433222221000 00011122211 488999999999
Q ss_pred CCCCCEEEEEeCCCcEEEEecCCceEEeeecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCeE
Q 009715 288 STDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVS 367 (528)
Q Consensus 288 spdg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~~~~~~~~h~~~V~ 367 (528)
++||+|||+|+.|..|.||+.++.+.++.+++|.+.|.+++|-.....|++++.|+.|++|+++....+.++.+|++.|.
T Consensus 211 S~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~ 290 (479)
T KOG0299|consen 211 SSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVL 290 (479)
T ss_pred cCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCcccee
Confidence 99999999999999999999999999999999999999999998888899999999999999999999999999999999
Q ss_pred EEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEEEeecCCCCCCCeecCCCCCccCCceeeeecCCCCc
Q 009715 368 GVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAP 447 (528)
Q Consensus 368 ~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~d~~~~~g~~~~~~ 447 (528)
+|.-.. -+ +.+-.|+.|+++++|++.....+
T Consensus 291 ~IdaL~-------re------R~vtVGgrDrT~rlwKi~eesql------------------------------------ 321 (479)
T KOG0299|consen 291 GIDALS-------RE------RCVTVGGRDRTVRLWKIPEESQL------------------------------------ 321 (479)
T ss_pred eechhc-------cc------ceEEeccccceeEEEecccccee------------------------------------
Confidence 997765 44 44555559999999999443221
Q ss_pred eeeecCCCCceEEeecCCCCeEEEEEeCC-eEEEEECCCeEEEEeCCCCccccC---CC-----------ccce--EEEc
Q 009715 448 SMRDVPKLSPLVAHRVHTEPLSGLIFTQE-SVLTVCREGHIKIWMRPGVAESQS---SS-----------SETV--LSTS 510 (528)
Q Consensus 448 ~~~d~~~~~~~~~~~~h~~~V~~l~~s~d-~l~t~s~Dg~i~iW~~~~~~~~~~---~~-----------~~~v--l~~s 510 (528)
.+.+|.+.+.|++|-.+ .+++|+.||.|.+|++-..+.... .| .--| +++.
T Consensus 322 ------------ifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i 389 (479)
T KOG0299|consen 322 ------------IFRGGEGSIDCVAFINDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVI 389 (479)
T ss_pred ------------eeeCCCCCeeeEEEecccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEec
Confidence 34567889999999875 599999999999999876552221 01 1123 7889
Q ss_pred cCCceEEEeeeecc
Q 009715 511 SKDKPLLSSKVVTS 524 (528)
Q Consensus 511 pd~~~l~s~~~~gs 524 (528)
|....+++|+-+|.
T Consensus 390 ~~sdL~asGS~~G~ 403 (479)
T KOG0299|consen 390 PGSDLLASGSWSGC 403 (479)
T ss_pred ccCceEEecCCCCc
Confidence 99999999986654
No 124
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.89 E-value=5e-22 Score=196.21 Aligned_cols=253 Identities=17% Similarity=0.304 Sum_probs=195.0
Q ss_pred CCCeEEEEecCCcEEEEEccccccccccceeeeeeeccCCcccCCceeE-EEEeeCCCcEEEEEeCCceEEEEEcCCCCC
Q 009715 167 DGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTS-VTWVPGGDGAFVVGHADGNLYVYEKSKDGA 245 (528)
Q Consensus 167 ~~~~l~~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~ 245 (528)
++..++.++.||++++|+-..+ ..... ..+..|.+-|.+ +++.+..+..+++|+.|.+|.+|....
T Consensus 24 ~~~~i~s~sRd~t~~vw~~~~~------~~l~~----~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~--- 90 (745)
T KOG0301|consen 24 DGVCIISGSRDGTVKVWAKKGK------QYLET----HAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQ--- 90 (745)
T ss_pred CCeEEeecCCCCceeeeeccCc------ccccc----eecccCcceeeccceeccccCcceEeecccceEEEEecCC---
Confidence 4446788889999999986541 11111 112236666776 788764343799999999999999875
Q ss_pred CCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCCCCEEEEEeCCCcEEEEecCCceEEeeecccCCCeE
Q 009715 246 GDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALL 325 (528)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~ 325 (528)
.+|+..+.+|+..|.|++...++. +++|+-|.++++|-. +++...+.+|...|.
T Consensus 91 -----------------------~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~asVW 144 (745)
T KOG0301|consen 91 -----------------------AEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQGHTASVW 144 (745)
T ss_pred -----------------------CCchhhhhccccceeeeecCCcCc-eEecccccceEEecc--hhhhcccCCcchhee
Confidence 478889999999999999888887 999999999999986 466666899999999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEc
Q 009715 326 CCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDL 405 (528)
Q Consensus 326 ~l~~sp~g~~l~sg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~ 405 (528)
+++.-|.+ .+++|+.|.+|++|.- ++++.++.+|.+.|+.+++-+ ++ .|+||+.||.|++||+
T Consensus 145 Av~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~-------~~-------~flScsNDg~Ir~w~~ 207 (745)
T KOG0301|consen 145 AVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLD-------DS-------HFLSCSNDGSIRLWDL 207 (745)
T ss_pred eeeecCCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEec-------CC-------CeEeecCCceEEEEec
Confidence 99999988 7899999999999985 788999999999999999998 65 6999999999999998
Q ss_pred cCCeEEEEeecCCCCCCCeecCCCCCccCCceeeeecCCCCceeeecCCCCceEEeecCCCCeEEEEEeC-Ce-EEEEEC
Q 009715 406 EMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQ-ES-VLTVCR 483 (528)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~~s~-d~-l~t~s~ 483 (528)
+++++ .++.+|+.-|+++.... ++ |+|++.
T Consensus 208 -~ge~l-----------------------------------------------~~~~ghtn~vYsis~~~~~~~Ivs~gE 239 (745)
T KOG0301|consen 208 -DGEVL-----------------------------------------------LEMHGHTNFVYSISMALSDGLIVSTGE 239 (745)
T ss_pred -cCcee-----------------------------------------------eeeeccceEEEEEEecCCCCeEEEecC
Confidence 44443 34557999999999444 44 999999
Q ss_pred CCeEEEEeCCCCccccCCCccce--EEEccCCceEEEeeeecc
Q 009715 484 EGHIKIWMRPGVAESQSSSSETV--LSTSSKDKPLLSSKVVTS 524 (528)
Q Consensus 484 Dg~i~iW~~~~~~~~~~~~~~~v--l~~spd~~~l~s~~~~gs 524 (528)
|++++||+.....+...--.-.+ ..+-++|..++ |..+|.
T Consensus 240 DrtlriW~~~e~~q~I~lPttsiWsa~~L~NgDIvv-g~SDG~ 281 (745)
T KOG0301|consen 240 DRTLRIWKKDECVQVITLPTTSIWSAKVLLNGDIVV-GGSDGR 281 (745)
T ss_pred CceEEEeecCceEEEEecCccceEEEEEeeCCCEEE-eccCce
Confidence 99999999883322222222234 33345666544 444443
No 125
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=3.7e-21 Score=173.23 Aligned_cols=265 Identities=12% Similarity=0.204 Sum_probs=184.6
Q ss_pred CCCCeEEEEecCCcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEee--CCCcEEEEEeCCceEEEEEcCCC
Q 009715 166 KDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVP--GGDGAFVVGHADGNLYVYEKSKD 243 (528)
Q Consensus 166 ~~~~~l~~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p--~g~~~l~tg~~dg~v~vwd~~~~ 243 (528)
+.|+.+++++.|++|.|||.+.. ............|.+.|..+.|.+ .|+ .+|+++.|+++.||+-...
T Consensus 23 ~~GRRmAtCSsDq~vkI~d~~~~--------s~~W~~Ts~Wrah~~Si~rV~WAhPEfGq-vvA~cS~Drtv~iWEE~~~ 93 (361)
T KOG2445|consen 23 FYGRRMATCSSDQTVKIWDSTSD--------SGTWSCTSSWRAHDGSIWRVVWAHPEFGQ-VVATCSYDRTVSIWEEQEK 93 (361)
T ss_pred ccCceeeeccCCCcEEEEeccCC--------CCceEEeeeEEecCCcEEEEEecCccccc-eEEEEecCCceeeeeeccc
Confidence 77999999999999999997541 111223333446999999999965 466 9999999999999997421
Q ss_pred CCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECC--CCCEEEEEeCCCcEEEEecCCceE------Ee
Q 009715 244 GAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST--DGTYLATVGRDGYLRVFDYSKEQL------IC 315 (528)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp--dg~~l~s~~~dg~i~vwd~~~~~~------~~ 315 (528)
... ...........+......|+.++|.| -|-.||+++.||.||||+...... ..
T Consensus 94 ~~~-----------------~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~ 156 (361)
T KOG2445|consen 94 SEE-----------------AHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQH 156 (361)
T ss_pred ccc-----------------cccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhh
Confidence 110 00011233344444568999999999 578999999999999998754322 12
Q ss_pred eec-------ccCCCeEEEEEcC---CCCEEEEEeCC-----CcEEEEECCCC----eEEEEeecCCCCeEEEEEecCCC
Q 009715 316 GGK-------SYYGALLCCAWSM---DGKYILTGGED-----DLVQVWSMEDR----KVVAWGEGHNSWVSGVAFDSYWS 376 (528)
Q Consensus 316 ~~~-------~~~~~v~~l~~sp---~g~~l~sg~~d-----g~v~vwd~~~~----~~~~~~~~h~~~V~~v~f~p~~~ 376 (528)
.+. .+..+..|+.|+| ...+||+|+.+ +.++||..... ..+..+.+|..+|++++|.|.
T Consensus 157 Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn-- 234 (361)
T KOG2445|consen 157 EIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPN-- 234 (361)
T ss_pred hhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccc--
Confidence 222 3556788999998 34578888766 47889987653 345667799999999999992
Q ss_pred CCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEEEeecCCCCCCCeecCCCCCccCCceeeeecCCCCceeeecCCCC
Q 009715 377 QPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLS 456 (528)
Q Consensus 377 ~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~ 456 (528)
-| ..+.+|++++.|| |+||.++.......-+. . ..++ .+.++ ..+
T Consensus 235 ----~G---r~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee---~----~~~~-------------------~~~~l-~v~ 279 (361)
T KOG2445|consen 235 ----IG---RSYHLLAVATKDG-VRIFKVKVARSAIEEEE---V----LAPD-------------------LMTDL-PVE 279 (361)
T ss_pred ----cC---CceeeEEEeecCc-EEEEEEeeccchhhhhc---c----cCCC-------------------Ccccc-ceE
Confidence 23 3346899999999 99999875331110000 0 0000 00000 123
Q ss_pred ceEEeecCCCCeEEEEEeCCe--EEEEECCCeEEEEeCC
Q 009715 457 PLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWMRP 493 (528)
Q Consensus 457 ~~~~~~~h~~~V~~l~~s~d~--l~t~s~Dg~i~iW~~~ 493 (528)
.+..+..|.+.|..+.|+-.+ |.+.|.||.||+|...
T Consensus 280 ~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 280 KVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred EeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 455677899999999999875 8899999999999843
No 126
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=4.8e-22 Score=187.08 Aligned_cols=249 Identities=13% Similarity=0.185 Sum_probs=186.6
Q ss_pred CCCCCeEEEEecCCcEEEEEccccccc-----cc----cceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeCCceE
Q 009715 165 AKDGHDLLIGLNSGDVYSVSLRQQLQD-----VG----KKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNL 235 (528)
Q Consensus 165 ~~~~~~l~~g~~~G~v~iwd~~~~~~~-----~~----~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v 235 (528)
-..|+++++|+.+-.|.|||+.-...- .+ ++......-......|+..|..++|+..-.++||+|+.|.+|
T Consensus 189 ~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV 268 (463)
T KOG0270|consen 189 GGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTV 268 (463)
T ss_pred CCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceE
Confidence 346789999999999999998642110 00 000000000111235999999999999998899999999999
Q ss_pred EEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECC-CCCEEEEEeCCCcEEEEecCCceEE
Q 009715 236 YVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST-DGTYLATVGRDGYLRVFDYSKEQLI 314 (528)
Q Consensus 236 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp-dg~~l~s~~~dg~i~vwd~~~~~~~ 314 (528)
++||+.+ .++...+..|.+.|.+++|+| ...+|++|+.|++|.+.|.+.....
T Consensus 269 ~lWD~~~--------------------------g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s 322 (463)
T KOG0270|consen 269 KLWDVDT--------------------------GKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNS 322 (463)
T ss_pred EEEEcCC--------------------------CCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCcccc
Confidence 9999987 345666667889999999999 6789999999999999999854333
Q ss_pred eeecccCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCC-CeEEEEeecCCCCeEEEEEecCCCCCCCCCCccceeEEEE
Q 009715 315 CGGKSYYGALLCCAWSMDGK-YILTGGEDDLVQVWSMED-RKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFG 392 (528)
Q Consensus 315 ~~~~~~~~~v~~l~~sp~g~-~l~sg~~dg~v~vwd~~~-~~~~~~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~ 392 (528)
...-...+.|..++|.|... .++++..||.|+-+|+|. ++++.+++.|.+.|.+|++++. .- .+++
T Consensus 323 ~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~------~p------~~l~ 390 (463)
T KOG0270|consen 323 GKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQ------TP------GLLS 390 (463)
T ss_pred CceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCC------CC------ccee
Confidence 32233567899999999665 566778899999999998 4999999999999999999862 11 6899
Q ss_pred EEeCCCeEEEEEccCCeEEEEeecCCCCCCCeecCCCCCccCCceeeeecCCCCceeeecCCCCceEEeecCCCCeEEEE
Q 009715 393 SVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLI 472 (528)
Q Consensus 393 s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~ 472 (528)
+++.|+.|++|++..........+ .+ --+...|.+
T Consensus 391 t~s~d~~Vklw~~~~~~~~~v~~~-------------------------------------------~~--~~~rl~c~~ 425 (463)
T KOG0270|consen 391 TASTDKVVKLWKFDVDSPKSVKEH-------------------------------------------SF--KLGRLHCFA 425 (463)
T ss_pred eccccceEEEEeecCCCCcccccc-------------------------------------------cc--cccceeecc
Confidence 999999999999875443221111 00 012256777
Q ss_pred EeCC--e-EEEEECCCeEEEEeCCCCc
Q 009715 473 FTQE--S-VLTVCREGHIKIWMRPGVA 496 (528)
Q Consensus 473 ~s~d--~-l~t~s~Dg~i~iW~~~~~~ 496 (528)
+.|+ + |+.|+..+.++|||+-...
T Consensus 426 ~~~~~a~~la~GG~k~~~~vwd~~~~~ 452 (463)
T KOG0270|consen 426 LDPDVAFTLAFGGEKAVLRVWDIFTNS 452 (463)
T ss_pred cCCCcceEEEecCccceEEEeecccCh
Confidence 7786 3 8888888899999987654
No 127
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.89 E-value=6.6e-22 Score=182.43 Aligned_cols=220 Identities=15% Similarity=0.192 Sum_probs=172.6
Q ss_pred cCCceeEEEEeeCCC-cEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEE
Q 009715 209 NNSRCTSVTWVPGGD-GAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAF 287 (528)
Q Consensus 209 h~~~v~~l~~~p~g~-~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 287 (528)
|.+.|+.+.-.+-++ .+.++-+..|.|+||++...-........ ........|+..+.+|.+.-+.++|
T Consensus 150 h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~----------~~~~s~~~Pl~t~~ghk~EGy~LdW 219 (440)
T KOG0302|consen 150 HYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGL----------EVKDSEFRPLFTFNGHKGEGYGLDW 219 (440)
T ss_pred cccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccc----------cccccccCceEEecccCccceeeec
Confidence 777888888877653 26666788899999998642111111000 0112567899999999999999999
Q ss_pred CC-CCCEEEEEeCCCcEEEEecCCceEE---eeecccCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCC---eEEEEe
Q 009715 288 ST-DGTYLATVGRDGYLRVFDYSKEQLI---CGGKSYYGALLCCAWSMDGK-YILTGGEDDLVQVWSMEDR---KVVAWG 359 (528)
Q Consensus 288 sp-dg~~l~s~~~dg~i~vwd~~~~~~~---~~~~~~~~~v~~l~~sp~g~-~l~sg~~dg~v~vwd~~~~---~~~~~~ 359 (528)
|| ....|++|..-+.|++|...++.-. ..+.+|...|..|+|||..+ .|++|+.|+.|+|||++.+ .++.+
T Consensus 220 Sp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~- 298 (440)
T KOG0302|consen 220 SPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST- 298 (440)
T ss_pred ccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-
Confidence 99 3335888888889999999887543 23566999999999999654 7889999999999999987 34444
Q ss_pred ecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEEEeecCCCCCCCeecCCCCCccCCceee
Q 009715 360 EGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCP 439 (528)
Q Consensus 360 ~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~d~~~~ 439 (528)
+.|.+.|+.|.|+. +- .+|++|+.||+++|||++.-+.
T Consensus 299 kAh~sDVNVISWnr-------~~------~lLasG~DdGt~~iwDLR~~~~----------------------------- 336 (440)
T KOG0302|consen 299 KAHNSDVNVISWNR-------RE------PLLASGGDDGTLSIWDLRQFKS----------------------------- 336 (440)
T ss_pred eccCCceeeEEccC-------Cc------ceeeecCCCceEEEEEhhhccC-----------------------------
Confidence 78999999999986 44 4899999999999999986432
Q ss_pred eecCCCCceeeecCCCCceEEeecCCCCeEEEEEeCC---eEEEEECCCeEEEEeCCCCc
Q 009715 440 VGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE---SVLTVCREGHIKIWMRPGVA 496 (528)
Q Consensus 440 ~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~~s~d---~l~t~s~Dg~i~iW~~~~~~ 496 (528)
.+|+..+.-|..+|++|.|+|. -|+.+|.|..|.|||+.-..
T Consensus 337 ---------------~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~ 381 (440)
T KOG0302|consen 337 ---------------GQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEA 381 (440)
T ss_pred ---------------CCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccC
Confidence 2477788889999999999994 38899999999999986433
No 128
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.89 E-value=8.1e-20 Score=178.24 Aligned_cols=268 Identities=12% Similarity=0.082 Sum_probs=187.4
Q ss_pred CeEEEEecCCcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCC
Q 009715 169 HDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDS 248 (528)
Q Consensus 169 ~~l~~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~ 248 (528)
+.++++..+|.|++||+.+. + .... +. +...+.+++|+|++..+++++..++.|++||.....
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~-----~-~~~~--~~-----~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~---- 64 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATL-----E-VTRT--FP-----VGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGE---- 64 (300)
T ss_pred cEEEEecCCCEEEEEECCCC-----c-eEEE--EE-----CCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCc----
Confidence 56788889999999998752 1 1111 11 223467899999998344677889999999987521
Q ss_pred ccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCCCCEEEEE-eCCCcEEEEecCCceEEeeecccCCCeEEE
Q 009715 249 SFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATV-GRDGYLRVFDYSKEQLICGGKSYYGALLCC 327 (528)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l 327 (528)
.+..+..+ ..+..++|+|+++.++++ ..|+.|++||+.+.+.+..+.. ...+.++
T Consensus 65 ----------------------~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~ 120 (300)
T TIGR03866 65 ----------------------VIGTLPSG-PDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGM 120 (300)
T ss_pred ----------------------EEEeccCC-CCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceE
Confidence 11112222 234678999999877655 5689999999998887776653 3446789
Q ss_pred EEcCCCCEEEEEeCCC-cEEEEECCCCeEEEEeecCCCCeEEEEEecCCCCCCCCCCccceeEEE-EEEeCCCeEEEEEc
Q 009715 328 AWSMDGKYILTGGEDD-LVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRF-GSVGQDTRLLLWDL 405 (528)
Q Consensus 328 ~~sp~g~~l~sg~~dg-~v~vwd~~~~~~~~~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l-~s~s~D~~i~lwd~ 405 (528)
+|+|++++++++..++ .+.+||.++++.+..+. ....+..++|+| || .+| +++..++.|++||+
T Consensus 121 ~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~s~-------dg------~~l~~~~~~~~~v~i~d~ 186 (300)
T TIGR03866 121 AVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL-VDQRPRFAEFTA-------DG------KELWVSSEIGGTVSVIDV 186 (300)
T ss_pred EECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE-cCCCccEEEECC-------CC------CEEEEEcCCCCEEEEEEc
Confidence 9999999999888765 57788999887766554 334567899999 88 455 55557999999999
Q ss_pred cCCeEEEEeecCC--------CCCCCeecCCCCCccCCceeeeecCCCCceeeecCCCCceEEeecCCCCeEEEEEeCCe
Q 009715 406 EMDEIVVPLRRGP--------LGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES 477 (528)
Q Consensus 406 ~~~~~~~~~~~~~--------~~~~~~~s~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~~s~d~ 477 (528)
.+++.+..+.... ....+.|++++.. .+.....+..+.+||+.+.+.+..+. +...+.+++|+|++
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~-----~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~g 260 (300)
T TIGR03866 187 ATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKT-----AFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTPDE 260 (300)
T ss_pred CcceeeeeeeecccccccccCCccceEECCCCCE-----EEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEECCCC
Confidence 9998877664321 1123455665531 11222334568899998877665543 45578999999975
Q ss_pred --EEEE-ECCCeEEEEeCCCCcc
Q 009715 478 --VLTV-CREGHIKIWMRPGVAE 497 (528)
Q Consensus 478 --l~t~-s~Dg~i~iW~~~~~~~ 497 (528)
|+++ +.++.|++||+.++..
T Consensus 261 ~~l~~~~~~~~~i~v~d~~~~~~ 283 (300)
T TIGR03866 261 KYLLTTNGVSNDVSVIDVAALKV 283 (300)
T ss_pred CEEEEEcCCCCeEEEEECCCCcE
Confidence 6665 5689999999988763
No 129
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.89 E-value=3.6e-21 Score=193.72 Aligned_cols=366 Identities=12% Similarity=0.155 Sum_probs=277.4
Q ss_pred hhhhhhhcCCCCCceeeccCCCCCCCccccCCcccCCcccCCCCCCcceeeeCCCccEEEEeCCCcEEEEeCCCCCC---
Q 009715 87 RSAAAKLLGTGNGSRTLGFGGGNGGSKSISGSSRIGSLGASSSSTSMTNTNFDGKGTYIIFNVGDAIFISDLNSQDK--- 163 (528)
Q Consensus 87 ~~~~~~~~~~~~g~~~~sf~gh~~~v~~v~~s~~~~~~~~s~s~~s~~~~~~~~~g~~~~~~~~~~i~v~~~~~~~~--- 163 (528)
.++..-+.+.+.++.+.+|+.-.|.|++++|.. +| .+.+++..+.|.+.+||..+.-.++-+.....
T Consensus 222 ~~G~ViifNlK~dkil~sFk~d~g~VtslSFrt-DG---------~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv 291 (910)
T KOG1539|consen 222 ENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRT-DG---------NPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSV 291 (910)
T ss_pred cCceEEEEEcccCcEEEEEEccccceeEEEecc-CC---------CeeEEeccCCceEEEEEcCCCeeeeeeeccccCCc
Confidence 356777899999999999977779999999988 33 33334444689999999988766555553221
Q ss_pred C----CCCCCeEEEEecCCcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEe-eCCCcEEEEEeCCceEEEE
Q 009715 164 D----AKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWV-PGGDGAFVVGHADGNLYVY 238 (528)
Q Consensus 164 ~----~~~~~~l~~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~-p~g~~~l~tg~~dg~v~vw 238 (528)
. .+....|++.+.|..+++|-.++.. ...++.+...+|..+..||+|. .+|. .+.+++.|++++.+
T Consensus 292 ~~~~fl~~epVl~ta~~DnSlk~~vfD~~d--------g~pR~LR~R~GHs~Pp~~irfy~~~g~-~ilsa~~Drt~r~f 362 (910)
T KOG1539|consen 292 TGATFLPGEPVLVTAGADNSLKVWVFDSGD--------GVPRLLRSRGGHSAPPSCIRFYGSQGH-FILSAKQDRTLRSF 362 (910)
T ss_pred ccceecCCCceEeeccCCCceeEEEeeCCC--------CcchheeeccCCCCCchheeeeccCcE-EEEecccCcchhhh
Confidence 1 6778888999999988888766421 1133445555699999999998 4555 89999999999999
Q ss_pred EcCCCCCCCC--------------cc--ccccccc--eeEEeccCC----------CCCCCeEEEee-------------
Q 009715 239 EKSKDGAGDS--------------SF--PVIKDQT--QFSVAHPRY----------SKSNPIARWHI------------- 277 (528)
Q Consensus 239 d~~~~~~~~~--------------~~--~~~~~~~--~~~~~~~~~----------~~~~~~~~~~~------------- 277 (528)
++..+..... .+ ...+.+. .+.....+. ........|+.
T Consensus 363 s~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~ 442 (910)
T KOG1539|consen 363 SVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPK 442 (910)
T ss_pred hhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCc
Confidence 8754211000 00 0000000 011110000 01112222321
Q ss_pred ----cCCCeEEEEECCCCCEEEEEeCCCcEEEEecCCceEEeee---cccCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 009715 278 ----CQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGG---KSYYGALLCCAWSMDGKYILTGGEDDLVQVWSM 350 (528)
Q Consensus 278 ----h~~~v~~l~~spdg~~l~s~~~dg~i~vwd~~~~~~~~~~---~~~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~ 350 (528)
-...+++++.++.|++.+.|+..|.|-+|++++|-....+ ..|.++|..++....++.+++++.+|.+++||.
T Consensus 443 ~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f 522 (910)
T KOG1539|consen 443 RFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDF 522 (910)
T ss_pred cccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEec
Confidence 2267899999999999999999999999999999888877 479999999999999999999999999999999
Q ss_pred CCCeEEEEeecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEEEee-cCCCCCCCeecCCC
Q 009715 351 EDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLR-RGPLGGSPTFSTGS 429 (528)
Q Consensus 351 ~~~~~~~~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~-~~~~~~~~~~s~~~ 429 (528)
..+..+..+. -...+.++.++. .. .+++.+..|-.|+++|..+.+.++.+. +...++.++||++|
T Consensus 523 ~~k~l~~~l~-l~~~~~~iv~hr-------~s------~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~Dg 588 (910)
T KOG1539|consen 523 KKKVLKKSLR-LGSSITGIVYHR-------VS------DLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDG 588 (910)
T ss_pred CCcceeeeec-cCCCcceeeeee-------hh------hhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCC
Confidence 9988777776 556678888876 44 478999999999999999999999998 56789999999998
Q ss_pred CCccCCceeeeecCCCCceeeecCCCCceEEeecCCCCeEEEEEeCC--eEEEEECC-CeEEEEeC
Q 009715 430 QSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE--SVLTVCRE-GHIKIWMR 492 (528)
Q Consensus 430 ~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~~s~d--~l~t~s~D-g~i~iW~~ 492 (528)
..+...++|..+++||+++...+..+.. ..+..++.|+|+ +|+|+..| .-|++|.-
T Consensus 589 ------rWlisasmD~tIr~wDlpt~~lID~~~v-d~~~~sls~SPngD~LAT~Hvd~~gIylWsN 647 (910)
T KOG1539|consen 589 ------RWLISASMDSTIRTWDLPTGTLIDGLLV-DSPCTSLSFSPNGDFLATVHVDQNGIYLWSN 647 (910)
T ss_pred ------cEEEEeecCCcEEEEeccCcceeeeEec-CCcceeeEECCCCCEEEEEEecCceEEEEEc
Confidence 6678888999999999999998887753 577899999995 59999998 56999974
No 130
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.89 E-value=1.6e-21 Score=190.90 Aligned_cols=285 Identities=18% Similarity=0.211 Sum_probs=196.4
Q ss_pred CCCCeEEEEecCCcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCC
Q 009715 166 KDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGA 245 (528)
Q Consensus 166 ~~~~~l~~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~ 245 (528)
...+.|+++..+|.|.++|..++... +. ..-......|...|.+++|.| |+..|++++.|.++++||+....
T Consensus 62 n~eHiLavadE~G~i~l~dt~~~~fr----~e--e~~lk~~~aH~nAifDl~wap-ge~~lVsasGDsT~r~Wdvk~s~- 133 (720)
T KOG0321|consen 62 NKEHILAVADEDGGIILFDTKSIVFR----LE--ERQLKKPLAHKNAIFDLKWAP-GESLLVSASGDSTIRPWDVKTSR- 133 (720)
T ss_pred CccceEEEecCCCceeeecchhhhcc----hh--hhhhcccccccceeEeeccCC-CceeEEEccCCceeeeeeeccce-
Confidence 34567899999999999998863221 00 111123445999999999999 66599999999999999998632
Q ss_pred CCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECC-CCCEEEEEeCCCcEEEEecCCce------------
Q 009715 246 GDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST-DGTYLATVGRDGYLRVFDYSKEQ------------ 312 (528)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp-dg~~l~s~~~dg~i~vwd~~~~~------------ 312 (528)
..-...+-+|++.|.+++|.| |...|++|+.||.|.|||++-..
T Consensus 134 -----------------------l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~ 190 (720)
T KOG0321|consen 134 -----------------------LVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIY 190 (720)
T ss_pred -----------------------eecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhh
Confidence 122335778999999999999 67789999999999999986321
Q ss_pred ---------------EEeeecccCCCeEE---EEEcCCCCEEEEEeC-CCcEEEEECCCCeEEEEe--------ecC---
Q 009715 313 ---------------LICGGKSYYGALLC---CAWSMDGKYILTGGE-DDLVQVWSMEDRKVVAWG--------EGH--- 362 (528)
Q Consensus 313 ---------------~~~~~~~~~~~v~~---l~~sp~g~~l~sg~~-dg~v~vwd~~~~~~~~~~--------~~h--- 362 (528)
.+..-+.+...|.. +.+..|...||+++. |+.|+|||++........ ..|
T Consensus 191 ~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skr 270 (720)
T KOG0321|consen 191 GRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKR 270 (720)
T ss_pred ccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccc
Confidence 01112234444555 667778889999888 999999999875433222 123
Q ss_pred CCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEEEeecCCCCCCCeecCCCCCccC-Cceeeee
Q 009715 363 NSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHW-DNVCPVG 441 (528)
Q Consensus 363 ~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~-d~~~~~g 441 (528)
.-.+.++..+. .|. +++++|. |+.|.+||+.+.......... ......|-... ...| +..+..|
T Consensus 271 s~G~~nL~lDs-------sGt-----~L~AsCt-D~sIy~ynm~s~s~sP~~~~s-g~~~~sf~vks-~lSpd~~~l~Sg 335 (720)
T KOG0321|consen 271 SVGQVNLILDS-------SGT-----YLFASCT-DNSIYFYNMRSLSISPVAEFS-GKLNSSFYVKS-ELSPDDCSLLSG 335 (720)
T ss_pred eeeeEEEEecC-------CCC-----eEEEEec-CCcEEEEeccccCcCchhhcc-Ccccceeeeee-ecCCCCceEecc
Confidence 22456666655 552 4555555 999999999865432111110 00011111111 1122 3455778
Q ss_pred cCCCCceeeecCCCC-ceEEeecCCCCeEEEEEeCC--e-EEEEECCCeEEEEeCCCCc
Q 009715 442 TLQPAPSMRDVPKLS-PLVAHRVHTEPLSGLIFTQE--S-VLTVCREGHIKIWMRPGVA 496 (528)
Q Consensus 442 ~~~~~~~~~d~~~~~-~~~~~~~h~~~V~~l~~s~d--~-l~t~s~Dg~i~iW~~~~~~ 496 (528)
+.+....+|.+...+ +...+.+|...|++++|.|. . ++|++.|-.++||++..+.
T Consensus 336 Ssd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l 394 (720)
T KOG0321|consen 336 SSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGL 394 (720)
T ss_pred CCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCch
Confidence 888889999887654 67778899999999999995 2 9999999999999986543
No 131
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=5.8e-21 Score=172.51 Aligned_cols=264 Identities=16% Similarity=0.200 Sum_probs=202.2
Q ss_pred EEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCCCCEEEEEeCCCcEE
Q 009715 225 AFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLR 304 (528)
Q Consensus 225 ~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~~~dg~i~ 304 (528)
.|++|+....|.-+++........ +. ......++..++.|.++|++++. ++.++|+|+.|-+|+
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~~~~~------~s--------~~~~l~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~ 66 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEPKGCT------DS--------VKPTLKPLFAFSAHAGSITALAV--SGPYVASGSSDETIH 66 (362)
T ss_pred eEEEeeeeeEEEEEEeccCccccc------cc--------cceeeeccccccccccceeEEEe--cceeEeccCCCCcEE
Confidence 578888888888887764221000 00 00123456778899999999999 588999999999999
Q ss_pred EEecCCceEEeeecccCCCeEEEEEcCCCC--EEEEEeCCCcEEEEECCCCeEEEEeecCCCCeEEEEEecCCCCCCCCC
Q 009715 305 VFDYSKEQLICGGKSYYGALLCCAWSMDGK--YILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDG 382 (528)
Q Consensus 305 vwd~~~~~~~~~~~~~~~~v~~l~~sp~g~--~l~sg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~v~f~p~~~~~~~dg 382 (528)
|||+.+...+..+..|.+.|+++.|.++-. +|++|++||.|.+|+...-+++.++++|...|+.++.+| .|
T Consensus 67 IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHP-------S~ 139 (362)
T KOG0294|consen 67 IYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHP-------SG 139 (362)
T ss_pred EEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecC-------CC
Confidence 999999988888889999999999998765 899999999999999999999999999999999999999 88
Q ss_pred CccceeEEEEEEeCCCeEEEEEccCCeEEEEeecCCCCCCCeecCCCCCccCCceeeeecCCCCceeeecCCCCceEEee
Q 009715 383 TAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHR 462 (528)
Q Consensus 383 ~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~ 462 (528)
++-++.+.|+.+++||+-.++.-..+........+.|++.|. .+.+ .....+-+|.+..-.....+.
T Consensus 140 ------KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd------~F~v-~~~~~i~i~q~d~A~v~~~i~ 206 (362)
T KOG0294|consen 140 ------KLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGD------HFVV-SGRNKIDIYQLDNASVFREIE 206 (362)
T ss_pred ------ceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCC------EEEE-EeccEEEEEecccHhHhhhhh
Confidence 789999999999999999998877776656666678877763 1111 122334455544433332222
Q ss_pred cCCCCeEEEEEeCC-eEEEEECCCeEEEEeCCCCc--cccCCCccce--EE--EccCCceEEEeeeeccc
Q 009715 463 VHTEPLSGLIFTQE-SVLTVCREGHIKIWMRPGVA--ESQSSSSETV--LS--TSSKDKPLLSSKVVTSS 525 (528)
Q Consensus 463 ~h~~~V~~l~~s~d-~l~t~s~Dg~i~iW~~~~~~--~~~~~~~~~v--l~--~spd~~~l~s~~~~gs~ 525 (528)
. ...+.++.|... .|++|+.|+.|++||-.... .....|...| +. ..|++.+|++++.+|.+
T Consensus 207 ~-~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I 275 (362)
T KOG0294|consen 207 N-PKRILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFI 275 (362)
T ss_pred c-cccceeeeecCCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceE
Confidence 1 245778888765 59999999999999988654 2334677777 33 27899999999999865
No 132
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.89 E-value=4e-20 Score=176.50 Aligned_cols=396 Identities=14% Similarity=0.144 Sum_probs=262.9
Q ss_pred hhhhhcCCCCCceeeccCCCCCCCccccCCcccCCcccCCCCCCcceeeeCCCccEEEEeCCCcEEEEe---CCCCCCC-
Q 009715 89 AAAKLLGTGNGSRTLGFGGGNGGSKSISGSSRIGSLGASSSSTSMTNTNFDGKGTYIIFNVGDAIFISD---LNSQDKD- 164 (528)
Q Consensus 89 ~~~~~~~~~~g~~~~sf~gh~~~v~~v~~s~~~~~~~~s~s~~s~~~~~~~~~g~~~~~~~~~~i~v~~---~~~~~~~- 164 (528)
.-..+|+...+.++...+-.|..|-.+.|.|.+..++.+.+ +|.+.+|.......+.. ++..++.
T Consensus 180 h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~G-----------k~H~~Fw~~~~~~l~k~~~~fek~ekk~ 248 (626)
T KOG2106|consen 180 HMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCG-----------KGHLYFWTLRGGSLVKRQGIFEKREKKF 248 (626)
T ss_pred cccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeC-----------CceEEEEEccCCceEEEeeccccccceE
Confidence 34566777777777777777888888889887666666666 57777776655433222 2222222
Q ss_pred -----CCCCCeEEEEecCCcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeCCceEEEEE
Q 009715 165 -----AKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYE 239 (528)
Q Consensus 165 -----~~~~~~l~~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd 239 (528)
-..+..+++|.++|.|.||+... .++.+....|.+.|.++....+|. |++|+.|..|..||
T Consensus 249 Vl~v~F~engdviTgDS~G~i~Iw~~~~------------~~~~k~~~aH~ggv~~L~~lr~Gt--llSGgKDRki~~Wd 314 (626)
T KOG2106|consen 249 VLCVTFLENGDVITGDSGGNILIWSKGT------------NRISKQVHAHDGGVFSLCMLRDGT--LLSGGKDRKIILWD 314 (626)
T ss_pred EEEEEEcCCCCEEeecCCceEEEEeCCC------------ceEEeEeeecCCceEEEEEecCcc--EeecCccceEEecc
Confidence 34566788999999999999865 222222235999999999999997 77799999999999
Q ss_pred cCCCCCCCCccccccc--------cceeEEeccCC------CCCCCeEEEeecCCCeEEEEECCCCCEEEEEeCCCcEEE
Q 009715 240 KSKDGAGDSSFPVIKD--------QTQFSVAHPRY------SKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRV 305 (528)
Q Consensus 240 ~~~~~~~~~~~~~~~~--------~~~~~~~~~~~------~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~~~dg~i~v 305 (528)
-.-.......+|.... ...+.++..+. .........++|......++.+|+.+++++++.|+.+++
T Consensus 315 ~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~l 394 (626)
T KOG2106|consen 315 DNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRL 394 (626)
T ss_pred ccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEE
Confidence 4321111122221111 11122222221 233344566789999999999999999999999999999
Q ss_pred EecCCceEEeeecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCeEEEEEecCCCCCCCCCCcc
Q 009715 306 FDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAE 385 (528)
Q Consensus 306 wd~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~v~f~p~~~~~~~dg~~~ 385 (528)
|+ ..+++.... ...++.|+.|+|.| .+|.|...|...+.|.++...+..... ..++++|+|+| ||
T Consensus 395 W~--~~k~~wt~~-~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp-------~G--- 459 (626)
T KOG2106|consen 395 WN--DHKLEWTKI-IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSP-------DG--- 459 (626)
T ss_pred cc--CCceeEEEE-ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcC-------CC---
Confidence 99 455554433 46789999999999 999999999999999999777666555 88999999999 99
Q ss_pred ceeEEEEEEeCCCeEEEEEccCCeE-EEEee--cCCCCCCCeecCCCC---CccCCceeeeecCCCC---ceeeecCCC-
Q 009715 386 TVMYRFGSVGQDTRLLLWDLEMDEI-VVPLR--RGPLGGSPTFSTGSQ---SAHWDNVCPVGTLQPA---PSMRDVPKL- 455 (528)
Q Consensus 386 ~~~~~l~s~s~D~~i~lwd~~~~~~-~~~~~--~~~~~~~~~~s~~~~---~~~~d~~~~~g~~~~~---~~~~d~~~~- 455 (528)
.+|+.|+.|+.|.||.+..... ...+. ...++..+.++.+++ ....|-.+..|.-..+ ..+.|++-.
T Consensus 460 ---~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t 536 (626)
T KOG2106|consen 460 ---AFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWAT 536 (626)
T ss_pred ---CEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeee
Confidence 7999999999999999865433 33222 226677788888885 2222222222211111 112222211
Q ss_pred -CceEEe----ecCCCCeEEEEEeC--CeEEEEECCCeEEEEeCCCCccc-----cCCCccce--EEEccCCceEEEeee
Q 009715 456 -SPLVAH----RVHTEPLSGLIFTQ--ESVLTVCREGHIKIWMRPGVAES-----QSSSSETV--LSTSSKDKPLLSSKV 521 (528)
Q Consensus 456 -~~~~~~----~~h~~~V~~l~~s~--d~l~t~s~Dg~i~iW~~~~~~~~-----~~~~~~~v--l~~spd~~~l~s~~~ 521 (528)
....-+ ..|...|..++-+. +.+++|-..|.|+++..+=.+.. ...|...| ++|.-+...|++...
T Consensus 537 ~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~ 616 (626)
T KOG2106|consen 537 YTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGK 616 (626)
T ss_pred eEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEEecCC
Confidence 111111 12333344444443 34777778899999998754433 33566666 889888888777767
Q ss_pred eccccc
Q 009715 522 VTSSYR 527 (528)
Q Consensus 522 ~gs~~~ 527 (528)
+.|+++
T Consensus 617 D~Si~q 622 (626)
T KOG2106|consen 617 DTSIMQ 622 (626)
T ss_pred CceEEE
Confidence 777753
No 133
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.88 E-value=8e-21 Score=187.68 Aligned_cols=419 Identities=15% Similarity=0.146 Sum_probs=252.0
Q ss_pred hhhhhhcCCCCCceeeccCCCCCCCccccCCcccCCcccCCCCCCcceeeeCCCccEEEEeCCC--cEEEEeCCCCCCC-
Q 009715 88 SAAAKLLGTGNGSRTLGFGGGNGGSKSISGSSRIGSLGASSSSTSMTNTNFDGKGTYIIFNVGD--AIFISDLNSQDKD- 164 (528)
Q Consensus 88 ~~~~~~~~~~~g~~~~sf~gh~~~v~~v~~s~~~~~~~~s~s~~s~~~~~~~~~g~~~~~~~~~--~i~v~~~~~~~~~- 164 (528)
..+..+|.....-....+.||.+.|+|+++-|... ..+-+++.+.|++++.|.... -+.++.+....+.
T Consensus 33 ~~~Iav~dp~k~~i~t~l~GH~a~VnC~~~l~~s~--------~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~~~ 104 (764)
T KOG1063|consen 33 GPAIAVADPEKILIVTTLDGHVARVNCVHWLPTSE--------IVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHCKEC 104 (764)
T ss_pred CceEEEeCcccceeEEeccCCccceEEEEEccccc--------ccceEEEccCCCcEEEEEEeehheEEEEeecCcceeE
Confidence 34555666666656678899999999999976222 223556666789888887653 2455655553222
Q ss_pred ---CCCCCeEEEEecCCcEEEEEcccccc----c----------------c-cccee-e----------------eeeec
Q 009715 165 ---AKDGHDLLIGLNSGDVYSVSLRQQLQ----D----------------V-GKKLV-G----------------AHHYN 203 (528)
Q Consensus 165 ---~~~~~~l~~g~~~G~v~iwd~~~~~~----~----------------~-~~~~~-~----------------~~~~~ 203 (528)
......+.+...+|.+.+||..+..- . + .+... . .....
T Consensus 105 ~cv~a~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v 184 (764)
T KOG1063|consen 105 VCVVARSSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARV 184 (764)
T ss_pred EEEEeeeeEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEE
Confidence 11111222235788888888732110 0 0 00000 0 00011
Q ss_pred cCCcccCCceeEEEEeeCCC--cEEEEEeCCceEEEEEcCCCCCCCCc-----cccccccceeEEeccCCCCCCCeEEEe
Q 009715 204 KDGSVNNSRCTSVTWVPGGD--GAFVVGHADGNLYVYEKSKDGAGDSS-----FPVIKDQTQFSVAHPRYSKSNPIARWH 276 (528)
Q Consensus 204 ~~~~~h~~~v~~l~~~p~g~--~~l~tg~~dg~v~vwd~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (528)
.+..+|.+.|.+++|...+. .+|++++.|..||||.+...+..... .....+...+........+...-..+.
T Consensus 185 ~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~ 264 (764)
T KOG1063|consen 185 AELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLM 264 (764)
T ss_pred EEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhc
Confidence 12236999999999986543 48899999999999998754422100 000011111111000000111113356
Q ss_pred ecCCCeEEEEECCCCCEEEEEeCCCcEEEEecCCceE-------EeeecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 009715 277 ICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQL-------ICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWS 349 (528)
Q Consensus 277 ~h~~~v~~l~~spdg~~l~s~~~dg~i~vwd~~~~~~-------~~~~~~~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd 349 (528)
+|++-|+++.|+|.+..|++++.|.++.+|...+..- +..+-+..+......|+|++..+++-+.-|..++|.
T Consensus 265 GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWk 344 (764)
T KOG1063|consen 265 GHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWK 344 (764)
T ss_pred CcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEe
Confidence 8999999999999999999999999999998875421 122223345688999999999999999999999998
Q ss_pred CCCC---eEEEEeecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCC-eEEEEee----cCCCCC
Q 009715 350 MEDR---KVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMD-EIVVPLR----RGPLGG 421 (528)
Q Consensus 350 ~~~~---~~~~~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~-~~~~~~~----~~~~~~ 421 (528)
.+.. .....+.||.+.|.+|+|+| .| .+|++.+.|.+-|+|---.. ..-+.+. ++....
T Consensus 345 t~d~~~w~~~~~iSGH~~~V~dv~W~p-------sG------eflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~ 411 (764)
T KOG1063|consen 345 TKDKTFWTQEPVISGHVDGVKDVDWDP-------SG------EFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLT 411 (764)
T ss_pred ccCccceeeccccccccccceeeeecC-------CC------CEEEEeccccceeeecccccccceeeecccccccccce
Confidence 4332 23344568999999999999 88 69999999999999754311 1111111 111111
Q ss_pred CCeecC-------CCC---------------------------------------CccCCce-e----eeecC-------
Q 009715 422 SPTFST-------GSQ---------------------------------------SAHWDNV-C----PVGTL------- 443 (528)
Q Consensus 422 ~~~~s~-------~~~---------------------------------------~~~~d~~-~----~~g~~------- 443 (528)
++.|.. +.. .+..+.. + ..|..
T Consensus 412 c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et 491 (764)
T KOG1063|consen 412 CLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAET 491 (764)
T ss_pred eeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeec
Confidence 111111 100 0000000 0 00000
Q ss_pred --CCCc-eeeecC---------CCCceEEeecCCCCeEEEEEeCCe--EEEEECC-----CeEEEEeCCCCc--cccCCC
Q 009715 444 --QPAP-SMRDVP---------KLSPLVAHRVHTEPLSGLIFTQES--VLTVCRE-----GHIKIWMRPGVA--ESQSSS 502 (528)
Q Consensus 444 --~~~~-~~~d~~---------~~~~~~~~~~h~~~V~~l~~s~d~--l~t~s~D-----g~i~iW~~~~~~--~~~~~~ 502 (528)
...+ .+..-+ ....+..+.||...|++++.+|++ |+|+|.. -.|++|+...-. .....|
T Consensus 492 ~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~H 571 (764)
T KOG1063|consen 492 PLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGH 571 (764)
T ss_pred ccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheeccc
Confidence 0000 000000 012455677999999999999975 8888865 359999988644 345678
Q ss_pred ccce--EEEccCCceEEEeeee--ccccc
Q 009715 503 SETV--LSTSSKDKPLLSSKVV--TSSYR 527 (528)
Q Consensus 503 ~~~v--l~~spd~~~l~s~~~~--gs~~~ 527 (528)
.=+| ++|||||++|++.+.+ =++|+
T Consensus 572 sLTVT~l~FSpdg~~LLsvsRDRt~sl~~ 600 (764)
T KOG1063|consen 572 SLTVTRLAFSPDGRYLLSVSRDRTVSLYE 600 (764)
T ss_pred ceEEEEEEECCCCcEEEEeecCceEEeee
Confidence 8888 9999999999999877 44443
No 134
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=6.9e-21 Score=180.01 Aligned_cols=272 Identities=16% Similarity=0.232 Sum_probs=219.0
Q ss_pred cCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEEC
Q 009715 209 NNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFS 288 (528)
Q Consensus 209 h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 288 (528)
..+.|+++.|+|..+ +|++++.||+++||.++-.. ...++.++.-..+|.+..|.
T Consensus 212 s~~~I~sv~FHp~~p-lllvaG~d~~lrifqvDGk~------------------------N~~lqS~~l~~fPi~~a~f~ 266 (514)
T KOG2055|consen 212 SHGGITSVQFHPTAP-LLLVAGLDGTLRIFQVDGKV------------------------NPKLQSIHLEKFPIQKAEFA 266 (514)
T ss_pred CcCCceEEEecCCCc-eEEEecCCCcEEEEEecCcc------------------------ChhheeeeeccCccceeeec
Confidence 456899999999999 99999999999999997421 12344444556899999999
Q ss_pred CCCC-EEEEEeCCCcEEEEecCCceEEe--eecccC-CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCC
Q 009715 289 TDGT-YLATVGRDGYLRVFDYSKEQLIC--GGKSYY-GALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNS 364 (528)
Q Consensus 289 pdg~-~l~s~~~dg~i~vwd~~~~~~~~--~~~~~~-~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~~~~~~~~h~~ 364 (528)
|+|. .+++++....++.||+.+.+..+ ...++. ..+.....+|++++|+..+..|.|.+....+++.+..++ -.+
T Consensus 267 p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG 345 (514)
T KOG2055|consen 267 PNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEG 345 (514)
T ss_pred CCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-ecc
Confidence 9998 89999999999999999876543 233333 356778899999999999999999999999999998887 788
Q ss_pred CeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEEEeecCCCCC--CCeecCCCCCccCCceeeeec
Q 009715 365 WVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGG--SPTFSTGSQSAHWDNVCPVGT 442 (528)
Q Consensus 365 ~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~--~~~~s~~~~~~~~d~~~~~g~ 442 (528)
.|..++|+. || ..|++++.+|.|.+||++...++..+.....+. .++.+.++ ..+++|+
T Consensus 346 ~v~~~~fsS-------ds------k~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng------~ylA~GS 406 (514)
T KOG2055|consen 346 VVSDFTFSS-------DS------KELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNG------SYLATGS 406 (514)
T ss_pred EEeeEEEec-------CC------cEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCC------ceEEecc
Confidence 899999998 99 788888899999999999999998887654433 34444554 3779999
Q ss_pred CCCCceeeecC------CCCceEEeecCCCCeEEEEEeCCe----EEEEECCCeEEEEeCCCCcccc--CCCccc---e-
Q 009715 443 LQPAPSMRDVP------KLSPLVAHRVHTEPLSGLIFTQES----VLTVCREGHIKIWMRPGVAESQ--SSSSET---V- 506 (528)
Q Consensus 443 ~~~~~~~~d~~------~~~~~~~~~~h~~~V~~l~~s~d~----l~t~s~Dg~i~iW~~~~~~~~~--~~~~~~---v- 506 (528)
..+.+.+||.. ..+|+.++..-...|++|+|++|. |++-..+..+|+-.+++..... ...... +
T Consensus 407 ~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vt 486 (514)
T KOG2055|consen 407 DSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVT 486 (514)
T ss_pred CcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceE
Confidence 99999999954 356888887778899999999985 4555577899999999876321 112222 2
Q ss_pred -EEEccCCceEEEeeeeccc
Q 009715 507 -LSTSSKDKPLLSSKVVTSS 525 (528)
Q Consensus 507 -l~~spd~~~l~s~~~~gs~ 525 (528)
++|||.+-+||.|+..|.+
T Consensus 487 c~aFSP~sG~lAvGNe~grv 506 (514)
T KOG2055|consen 487 CMAFSPNSGYLAVGNEAGRV 506 (514)
T ss_pred EEEecCCCceEEeecCCCce
Confidence 9999999999999988764
No 135
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.87 E-value=3.1e-20 Score=166.89 Aligned_cols=196 Identities=18% Similarity=0.225 Sum_probs=150.4
Q ss_pred CC-CCCeEEEEecCCcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCC
Q 009715 165 AK-DGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKD 243 (528)
Q Consensus 165 ~~-~~~~l~~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~ 243 (528)
+| ....+++|+.||+|++|++...-. ++. +....|.++|.+++|+.+|. .+++|+.|+.+++||+.+
T Consensus 36 SP~~~~~~~A~SWD~tVR~wevq~~g~-----~~~-----ka~~~~~~PvL~v~Wsddgs-kVf~g~~Dk~~k~wDL~S- 103 (347)
T KOG0647|consen 36 SPQADNLLAAGSWDGTVRIWEVQNSGQ-----LVP-----KAQQSHDGPVLDVCWSDDGS-KVFSGGCDKQAKLWDLAS- 103 (347)
T ss_pred ccccCceEEecccCCceEEEEEecCCc-----ccc-----hhhhccCCCeEEEEEccCCc-eEEeeccCCceEEEEccC-
Confidence 45 556667999999999999976211 111 11223899999999999998 999999999999999986
Q ss_pred CCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCCCC--EEEEEeCCCcEEEEecCCceEEeeec---
Q 009715 244 GAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGT--YLATVGRDGYLRVFDYSKEQLICGGK--- 318 (528)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spdg~--~l~s~~~dg~i~vwd~~~~~~~~~~~--- 318 (528)
+.+..+..|.++|.++.|-+... .|++|+-|++|+.||.+...++..+.
T Consensus 104 --------------------------~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPe 157 (347)
T KOG0647|consen 104 --------------------------GQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPE 157 (347)
T ss_pred --------------------------CCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccc
Confidence 35666778999999999987544 89999999999999998654432221
Q ss_pred ----------------------------------c----cCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC--eEEEE
Q 009715 319 ----------------------------------S----YYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDR--KVVAW 358 (528)
Q Consensus 319 ----------------------------------~----~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~--~~~~~ 358 (528)
. ....++||+..+|....+.|+-+|.+.|..++.+ +.-.+
T Consensus 158 RvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFt 237 (347)
T KOG0647|consen 158 RVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFT 237 (347)
T ss_pred eeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCcee
Confidence 1 1224688888888888899999999999988876 33455
Q ss_pred eecCCC---------CeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEE
Q 009715 359 GEGHNS---------WVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIV 411 (528)
Q Consensus 359 ~~~h~~---------~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~ 411 (528)
++.|.. .|++|+|+|. .| .|++++.||+..+||-.....+
T Consensus 238 FkCHR~~~~~~~~VYaVNsi~FhP~------hg-------tlvTaGsDGtf~FWDkdar~kL 286 (347)
T KOG0647|consen 238 FKCHRSTNSVNDDVYAVNSIAFHPV------HG-------TLVTAGSDGTFSFWDKDARTKL 286 (347)
T ss_pred EEEeccCCCCCCceEEecceEeecc------cc-------eEEEecCCceEEEecchhhhhh
Confidence 666652 5789999993 34 8999999999999997655433
No 136
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=5.6e-20 Score=187.28 Aligned_cols=264 Identities=14% Similarity=0.173 Sum_probs=210.1
Q ss_pred ccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEE
Q 009715 208 VNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAF 287 (528)
Q Consensus 208 ~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 287 (528)
.|....+.|+|.|+|. .|++++.||.|++|+...+..... .+..+...|.+++.
T Consensus 11 aht~G~t~i~~d~~ge-fi~tcgsdg~ir~~~~~sd~e~P~-------------------------ti~~~g~~v~~ia~ 64 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGE-FICTCGSDGDIRKWKTNSDEEEPE-------------------------TIDISGELVSSIAC 64 (933)
T ss_pred hccCceEEEEEcCCCC-EEEEecCCCceEEeecCCcccCCc-------------------------hhhccCceeEEEee
Confidence 4888899999999999 999999999999999765311100 01113456666665
Q ss_pred CCCCCEEEEEeCCCcEEEEecCCceEEeeecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCeE
Q 009715 288 STDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVS 367 (528)
Q Consensus 288 spdg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~~~~~~~~h~~~V~ 367 (528)
++.+|++++.++.|.+|.+.+++.-..+....-++.+++++.+|+++|.|+.|-.|++.++.+......+++|..+|.
T Consensus 65 --~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl 142 (933)
T KOG1274|consen 65 --YSNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVL 142 (933)
T ss_pred --cccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCcee
Confidence 455999999999999999998876555555678899999999999999999999999999999988999999999999
Q ss_pred EEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEEEeecCCC---------CCCCeecCCCCCccCCcee
Q 009715 368 GVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPL---------GGSPTFSTGSQSAHWDNVC 438 (528)
Q Consensus 368 ~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~---------~~~~~~s~~~~~~~~d~~~ 438 (528)
+|.|+| .+ .+|++.+.||.|++||+..+.+...+..-.+ ...+++++++ +.+
T Consensus 143 ~l~~~p-------~~------~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~------g~l 203 (933)
T KOG1274|consen 143 QLSYDP-------KG------NFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKG------GTL 203 (933)
T ss_pred eeeEcC-------CC------CEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCC------CeE
Confidence 999999 88 7999999999999999999988877765432 2334555654 556
Q ss_pred eeecCCCCceeeecCCCCceEEeec--CCCCeEEEEEeCC--eEEEEECCCeEEEEeCCCCccccCCCccce--EEEccC
Q 009715 439 PVGTLQPAPSMRDVPKLSPLVAHRV--HTEPLSGLIFTQE--SVLTVCREGHIKIWMRPGVAESQSSSSETV--LSTSSK 512 (528)
Q Consensus 439 ~~g~~~~~~~~~d~~~~~~~~~~~~--h~~~V~~l~~s~d--~l~t~s~Dg~i~iW~~~~~~~~~~~~~~~v--l~~spd 512 (528)
.+-..+..+.+|+...+++...+.. |...+..++|+|. +|++++.||.|.|||+++-.. ......| ++|-|+
T Consensus 204 a~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~--~~~~~~Vc~~aw~p~ 281 (933)
T KOG1274|consen 204 AVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER--HEFKRAVCCEAWKPN 281 (933)
T ss_pred EeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh--ccccceeEEEecCCC
Confidence 7778888999999998888777763 4555999999997 499999999999999997333 2222333 777777
Q ss_pred CceEEEee
Q 009715 513 DKPLLSSK 520 (528)
Q Consensus 513 ~~~l~s~~ 520 (528)
...|-.-.
T Consensus 282 ~n~it~~~ 289 (933)
T KOG1274|consen 282 ANAITLIT 289 (933)
T ss_pred CCeeEEEe
Confidence 76654433
No 137
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=9.9e-21 Score=184.05 Aligned_cols=301 Identities=20% Similarity=0.242 Sum_probs=211.2
Q ss_pred ceeeccCCCCCCCccccCCcccCCcccCCCCCCcceeeeCCCccEEEEeCCC--cEEEEeCCCCCCC-----CCCCCeEE
Q 009715 100 SRTLGFGGGNGGSKSISGSSRIGSLGASSSSTSMTNTNFDGKGTYIIFNVGD--AIFISDLNSQDKD-----AKDGHDLL 172 (528)
Q Consensus 100 ~~~~sf~gh~~~v~~v~~s~~~~~~~~s~s~~s~~~~~~~~~g~~~~~~~~~--~i~v~~~~~~~~~-----~~~~~~l~ 172 (528)
...+.|+||.|.|+|++..| .|.+++||+. +|.+.+|.+.. +++.+.+...-.. .++-..|+
T Consensus 391 ~~~lvyrGHtg~Vr~iSvdp-~G~wlasGsd----------DGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLA 459 (733)
T KOG0650|consen 391 RCALVYRGHTGLVRSISVDP-SGEWLASGSD----------DGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLA 459 (733)
T ss_pred eeeeeEeccCCeEEEEEecC-CcceeeecCC----------CCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEE
Confidence 34477999999999999999 8889999996 77777776544 4544444433222 33444555
Q ss_pred EEecCCcEEEEEcccc---ccccccceee-----------eeeeccC-----------CcccCCceeEEEEeeCCCcEEE
Q 009715 173 IGLNSGDVYSVSLRQQ---LQDVGKKLVG-----------AHHYNKD-----------GSVNNSRCTSVTWVPGGDGAFV 227 (528)
Q Consensus 173 ~g~~~G~v~iwd~~~~---~~~~~~~~~~-----------~~~~~~~-----------~~~h~~~v~~l~~~p~g~~~l~ 227 (528)
++.... +.+.+..-. ...+.+.+.. ...+.+. ...|...|..|.|+..|+ +|+
T Consensus 460 vA~~~~-~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGD-Yla 537 (733)
T KOG0650|consen 460 VAVGEC-VLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGD-YLA 537 (733)
T ss_pred EEecCc-eEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCc-eEE
Confidence 555443 444442110 0000000000 0112211 013888999999999999 898
Q ss_pred EEeCC---ceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCCCCEEEEEeCCCcEE
Q 009715 228 VGHAD---GNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLR 304 (528)
Q Consensus 228 tg~~d---g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~~~dg~i~ 304 (528)
+...+ ..|.|+++.+. .....| +.-.+.|.++.|+|...+|++++. ..|+
T Consensus 538 tV~~~~~~~~VliHQLSK~-~sQ~PF-------------------------~kskG~vq~v~FHPs~p~lfVaTq-~~vR 590 (733)
T KOG0650|consen 538 TVMPDSGNKSVLIHQLSKR-KSQSPF-------------------------RKSKGLVQRVKFHPSKPYLFVATQ-RSVR 590 (733)
T ss_pred EeccCCCcceEEEEecccc-cccCch-------------------------hhcCCceeEEEecCCCceEEEEec-cceE
Confidence 87654 47899998762 111111 112478999999998888998876 6899
Q ss_pred EEecCCceEEeeecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC-eEEEEeecCCCCeEEEEEecCCCCCCCCCC
Q 009715 305 VFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDR-KVVAWGEGHNSWVSGVAFDSYWSQPNSDGT 383 (528)
Q Consensus 305 vwd~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~-~~~~~~~~h~~~V~~v~f~p~~~~~~~dg~ 383 (528)
|||+..+++++.+......|..++.+|.|..|+.|+.|+.+..||+.-. ++.+++.-|...|++|+|++ .=
T Consensus 591 iYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~-------ry- 662 (733)
T KOG0650|consen 591 IYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHK-------RY- 662 (733)
T ss_pred EEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhcc-------cc-
Confidence 9999988777777666678999999999999999999999999999864 67888889999999999998 32
Q ss_pred ccceeEEEEEEeCCCeEEEEEccCCeEEEEeecCCCCCCCeecCCCCCccCCceeeeecCCCCceeeecCCCCceEEeec
Q 009715 384 AETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRV 463 (528)
Q Consensus 384 ~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~ 463 (528)
.+|++|+.|+++.|+.-.-..- +.. -+..-|+..+++
T Consensus 663 -----PLfas~sdDgtv~Vfhg~VY~D---l~q-----------------------------------npliVPlK~L~g 699 (733)
T KOG0650|consen 663 -----PLFASGSDDGTVIVFHGMVYND---LLQ-----------------------------------NPLIVPLKRLRG 699 (733)
T ss_pred -----ceeeeecCCCcEEEEeeeeehh---hhc-----------------------------------CCceEeeeeccC
Confidence 5899999999999985321110 000 011125666777
Q ss_pred CCCC----eEEEEEeCC--eEEEEECCCeEEEEe
Q 009715 464 HTEP----LSGLIFTQE--SVLTVCREGHIKIWM 491 (528)
Q Consensus 464 h~~~----V~~l~~s~d--~l~t~s~Dg~i~iW~ 491 (528)
|... |.++.|+|. .|++++.||+|++|.
T Consensus 700 H~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlfT 733 (733)
T KOG0650|consen 700 HEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLFT 733 (733)
T ss_pred ceeecccceEeecccCCCceEEecCCCceEEeeC
Confidence 7665 899999997 499999999999993
No 138
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=4.9e-20 Score=166.64 Aligned_cols=237 Identities=16% Similarity=0.232 Sum_probs=171.4
Q ss_pred ccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEE
Q 009715 208 VNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAF 287 (528)
Q Consensus 208 ~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 287 (528)
.|...|++++|+.||+ .|++++.|+.|+||+++.-...+..+. +....-+..+.+.|
T Consensus 84 gH~~~vt~~~FsSdGK-~lat~~~Dr~Ir~w~~~DF~~~eHr~~----------------------R~nve~dhpT~V~F 140 (420)
T KOG2096|consen 84 GHKKEVTDVAFSSDGK-KLATISGDRSIRLWDVRDFENKEHRCI----------------------RQNVEYDHPTRVVF 140 (420)
T ss_pred ccCCceeeeEEcCCCc-eeEEEeCCceEEEEecchhhhhhhhHh----------------------hccccCCCceEEEE
Confidence 5999999999999999 999999999999999875211111000 00001246678999
Q ss_pred CCCCCEEEEEe-CCCcEEEEecCCce---EE---------eeecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe
Q 009715 288 STDGTYLATVG-RDGYLRVFDYSKEQ---LI---------CGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRK 354 (528)
Q Consensus 288 spdg~~l~s~~-~dg~i~vwd~~~~~---~~---------~~~~~~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~ 354 (528)
.||.+-++... ....|++|-+...+ .. ..-+.|.-.+..+-...++++|++++.|..|.+|+++ |+
T Consensus 141 apDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq 219 (420)
T KOG2096|consen 141 APDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQ 219 (420)
T ss_pred CCCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cc
Confidence 99877655544 44579999875321 11 1112355567777777789999999999999999999 88
Q ss_pred EEEEeecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEEEeecCCCCCCCeecCCCCCccC
Q 009715 355 VVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHW 434 (528)
Q Consensus 355 ~~~~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 434 (528)
.+..+......-+..+.+| +| +++++++..-.|++|.+--++ +|
T Consensus 220 ~L~~idtnq~~n~~aavSP-------~G------RFia~~gFTpDVkVwE~~f~k------------------dG----- 263 (420)
T KOG2096|consen 220 LLQSIDTNQSSNYDAAVSP-------DG------RFIAVSGFTPDVKVWEPIFTK------------------DG----- 263 (420)
T ss_pred eeeeeccccccccceeeCC-------CC------cEEEEecCCCCceEEEEEecc------------------Cc-----
Confidence 8888887777778889999 99 899999999999999853221 11
Q ss_pred CceeeeecCCCCceeeecCCCCceEEeecCCCCeEEEEEeCC--eEEEEECCCeEEEEeCCCCcc--------c---cC-
Q 009715 435 DNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE--SVLTVCREGHIKIWMRPGVAE--------S---QS- 500 (528)
Q Consensus 435 d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~~s~d--~l~t~s~Dg~i~iW~~~~~~~--------~---~~- 500 (528)
.+ +....+..+.+|...|..++|+++ .++|.+.||++||||..-.-. . ..
T Consensus 264 -------~f---------qev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl 327 (420)
T KOG2096|consen 264 -------TF---------QEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPL 327 (420)
T ss_pred -------ch---------hhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcch
Confidence 11 112244577899999999999997 499999999999999642210 0 01
Q ss_pred --CCccce-EEEccCCceEEEee
Q 009715 501 --SSSETV-LSTSSKDKPLLSSK 520 (528)
Q Consensus 501 --~~~~~v-l~~spd~~~l~s~~ 520 (528)
...+.+ |+++|.|+.|+.+.
T Consensus 328 ~aag~~p~RL~lsP~g~~lA~s~ 350 (420)
T KOG2096|consen 328 HAAGSEPVRLELSPSGDSLAVSF 350 (420)
T ss_pred hhcCCCceEEEeCCCCcEEEeec
Confidence 122334 99999999998764
No 139
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=1.5e-20 Score=169.73 Aligned_cols=233 Identities=18% Similarity=0.209 Sum_probs=178.8
Q ss_pred eeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCCCC
Q 009715 213 CTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGT 292 (528)
Q Consensus 213 v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spdg~ 292 (528)
..|+.|++.|. +||+|+.||.|.|||+.+ .+.-+.+.+|..+|.+++||+||+
T Consensus 26 a~~~~Fs~~G~-~lAvGc~nG~vvI~D~~T--------------------------~~iar~lsaH~~pi~sl~WS~dgr 78 (405)
T KOG1273|consen 26 AECCQFSRWGD-YLAVGCANGRVVIYDFDT--------------------------FRIARMLSAHVRPITSLCWSRDGR 78 (405)
T ss_pred cceEEeccCcc-eeeeeccCCcEEEEEccc--------------------------cchhhhhhccccceeEEEecCCCC
Confidence 78999999999 999999999999999986 345566778889999999999999
Q ss_pred EEEEEeCCCcEEEEecCCceEEeeecccCCCeEEEE--------------------------------------------
Q 009715 293 YLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCA-------------------------------------------- 328 (528)
Q Consensus 293 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~-------------------------------------------- 328 (528)
.|++++.|..|.+||+..|.+++.++ ...+|..+.
T Consensus 79 ~LltsS~D~si~lwDl~~gs~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas 157 (405)
T KOG1273|consen 79 KLLTSSRDWSIKLWDLLKGSPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSAS 157 (405)
T ss_pred EeeeecCCceeEEEeccCCCceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccc
Confidence 99999999999999999887765543 223332222
Q ss_pred ---EcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCC-CCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEE
Q 009715 329 ---WSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHN-SWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWD 404 (528)
Q Consensus 329 ---~sp~g~~l~sg~~dg~v~vwd~~~~~~~~~~~~h~-~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd 404 (528)
|.+.|+++++|...|.+.++|.++.+++..++--. ..|..+.|+. .| .+|+.-+.|..||.|+
T Consensus 158 ~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~-------~g------~~liiNtsDRvIR~ye 224 (405)
T KOG1273|consen 158 HGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSR-------KG------RFLIINTSDRVIRTYE 224 (405)
T ss_pred cccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEec-------cC------cEEEEecCCceEEEEe
Confidence 44458899999999999999999999999888554 6788999988 88 7999999999999999
Q ss_pred ccCC-------eEEEEeecCCCC-----CCCeecCCCCCccCCceeeeecCCCCceeeecCCCCceEEeecCC-CCeEEE
Q 009715 405 LEMD-------EIVVPLRRGPLG-----GSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHT-EPLSGL 471 (528)
Q Consensus 405 ~~~~-------~~~~~~~~~~~~-----~~~~~s~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~-~~V~~l 471 (528)
++.- +.....+...-+ ..+.|+.++. -.++.....-.+++|+...+..+..+.|.. ....++
T Consensus 225 ~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dge-----Yv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV 299 (405)
T KOG1273|consen 225 ISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGE-----YVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDV 299 (405)
T ss_pred hhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCcc-----EEEeccccceeEEEEecCCcceeeeecCCchhheeec
Confidence 8621 110000000112 2344554442 222333455678999999999999998877 678899
Q ss_pred EEeCCe--EEEEECCCeEEEEeC
Q 009715 472 IFTQES--VLTVCREGHIKIWMR 492 (528)
Q Consensus 472 ~~s~d~--l~t~s~Dg~i~iW~~ 492 (528)
.|+|-. |++. ..|.|++|..
T Consensus 300 ~whp~rp~i~si-~sg~v~iw~~ 321 (405)
T KOG1273|consen 300 NWHPVRPIIASI-ASGVVYIWAV 321 (405)
T ss_pred ccccceeeeeec-cCCceEEEEe
Confidence 999965 4444 7799999985
No 140
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=1.6e-19 Score=178.28 Aligned_cols=270 Identities=16% Similarity=0.183 Sum_probs=213.2
Q ss_pred cCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeec-CCCeEEEEE
Q 009715 209 NNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHIC-QGSINSIAF 287 (528)
Q Consensus 209 h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~ 287 (528)
...+|+++||+.... .||.+-.||+|.||++...- -....++++ ...|.+++|
T Consensus 24 ~Ps~I~slA~s~kS~-~lAvsRt~g~IEiwN~~~~w-------------------------~~~~vi~g~~drsIE~L~W 77 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSN-QLAVSRTDGNIEIWNLSNNW-------------------------FLEPVIHGPEDRSIESLAW 77 (691)
T ss_pred eccceEEEEEeccCC-ceeeeccCCcEEEEccCCCc-------------------------eeeEEEecCCCCceeeEEE
Confidence 456899999999998 89999999999999998621 122233333 367999999
Q ss_pred CCCCCEEEEEeCCCcEEEEecCCceEEeeecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEE--EeecCCCC
Q 009715 288 STDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVA--WGEGHNSW 365 (528)
Q Consensus 288 spdg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~~~~--~~~~h~~~ 365 (528)
+ ++..|++.+.+|.|.-||+.+++.+..+....+.|.+++.+|.+..++.|++||.+..++...++... .+....+.
T Consensus 78 ~-e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sR 156 (691)
T KOG2048|consen 78 A-EGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSR 156 (691)
T ss_pred c-cCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccce
Confidence 9 45578899999999999999999999999889999999999999999999999988888888776543 33445689
Q ss_pred eEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEEEeecC----CC-CCCCeecCCCCCccCCceeee
Q 009715 366 VSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRG----PL-GGSPTFSTGSQSAHWDNVCPV 440 (528)
Q Consensus 366 V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~----~~-~~~~~~s~~~~~~~~d~~~~~ 440 (528)
|.++.|+| ++ ..+++|+.||.|++||+.++..++.+... .. ...+.++- ....+..+..
T Consensus 157 vLslsw~~-------~~------~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv---~~Lrd~tI~s 220 (691)
T KOG2048|consen 157 VLSLSWNP-------TG------TKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSV---LFLRDSTIAS 220 (691)
T ss_pred EEEEEecC-------Cc------cEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEE---EEeecCcEEE
Confidence 99999999 98 68999999999999999999887733321 11 11121111 1124567788
Q ss_pred ecCCCCceeeecCCCCceEEeecCCCCeEEEEEeCC--eEEEEECCCeEEEEeCCCCcc------ccCCCccce--EEEc
Q 009715 441 GTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE--SVLTVCREGHIKIWMRPGVAE------SQSSSSETV--LSTS 510 (528)
Q Consensus 441 g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~~s~d--~l~t~s~Dg~i~iW~~~~~~~------~~~~~~~~v--l~~s 510 (528)
|.-.+.+..||...+..++.+..|.+.|.+++..++ .+++++.|+.|.-+...+... ....|...+ +++.
T Consensus 221 gDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~ 300 (691)
T KOG2048|consen 221 GDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVI 300 (691)
T ss_pred ecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeee
Confidence 888999999999999999999999999999999985 699999999999998876642 222455555 5555
Q ss_pred cCCceEEEeeeec
Q 009715 511 SKDKPLLSSKVVT 523 (528)
Q Consensus 511 pd~~~l~s~~~~g 523 (528)
++ .|++|+.+.
T Consensus 301 ~~--~l~sgG~d~ 311 (691)
T KOG2048|consen 301 EN--ALISGGRDF 311 (691)
T ss_pred cc--eEEecceee
Confidence 55 777777664
No 141
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.86 E-value=2.4e-20 Score=176.21 Aligned_cols=278 Identities=14% Similarity=0.159 Sum_probs=213.7
Q ss_pred ccCCceeEEEEeeCCC-cEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEE
Q 009715 208 VNNSRCTSVTWVPGGD-GAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIA 286 (528)
Q Consensus 208 ~h~~~v~~l~~~p~g~-~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 286 (528)
.+..+|++++|+|..+ .++++|..-|+|-+||+...+. ....+..+..|.++|.+|.
T Consensus 184 v~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~----------------------d~d~v~~f~~hs~~Vs~l~ 241 (498)
T KOG4328|consen 184 VTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEK----------------------DKDGVYLFTPHSGPVSGLK 241 (498)
T ss_pred ecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCC----------------------ccCceEEeccCCccccceE
Confidence 4888999999999776 5899999999999999963221 2345777888999999999
Q ss_pred ECC-CCCEEEEEeCCCcEEEEecCCceE--EeeecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE-EEEeecC
Q 009715 287 FST-DGTYLATVGRDGYLRVFDYSKEQL--ICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKV-VAWGEGH 362 (528)
Q Consensus 287 ~sp-dg~~l~s~~~dg~i~vwd~~~~~~--~~~~~~~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~~-~~~~~~h 362 (528)
|+| +...+++.+.||+|++-|++.... +...+.....+..+.|+.+...++.+..=|...+||++++.. +..+.-|
T Consensus 242 F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh 321 (498)
T KOG4328|consen 242 FSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLH 321 (498)
T ss_pred ecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhh
Confidence 999 778899999999999999986643 233332345677788888888888887777999999998654 6667779
Q ss_pred CCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCe-----EEEEeecCCCCCCCeecCCCCCccCCce
Q 009715 363 NSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDE-----IVVPLRRGPLGGSPTFSTGSQSAHWDNV 437 (528)
Q Consensus 363 ~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~-----~~~~~~~~~~~~~~~~s~~~~~~~~d~~ 437 (528)
...|..|+++|. .. .+|+|++.|++++|||++.-. .+..+.+...+.+..|++.+ ..
T Consensus 322 ~kKI~sv~~NP~------~p------~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~------gt 383 (498)
T KOG4328|consen 322 KKKITSVALNPV------CP------WFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSG------GT 383 (498)
T ss_pred hcccceeecCCC------Cc------hheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCC------Cc
Confidence 999999999993 22 689999999999999998633 25566777889999999987 55
Q ss_pred eeeecCCCCceeeec----CCCCceEEeecCCC------CeEEEEEeCCe--EEEEECCCeEEEEeCCCCccccCCCc--
Q 009715 438 CPVGTLQPAPSMRDV----PKLSPLVAHRVHTE------PLSGLIFTQES--VLTVCREGHIKIWMRPGVAESQSSSS-- 503 (528)
Q Consensus 438 ~~~g~~~~~~~~~d~----~~~~~~~~~~~h~~------~V~~l~~s~d~--l~t~s~Dg~i~iW~~~~~~~~~~~~~-- 503 (528)
+.+-+.+..+++||. ....++..+. |.. .....+|.|+. |+.+-.-..|-|+|-.+++....-|.
T Consensus 384 l~TT~~D~~IRv~dss~~sa~~~p~~~I~-Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~ 462 (498)
T KOG4328|consen 384 LLTTCQDNEIRVFDSSCISAKDEPLGTIP-HNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPE 462 (498)
T ss_pred eEeeccCCceEEeecccccccCCccceee-ccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCcc
Confidence 778889999999998 4555555543 322 23456799975 77888888899999988873333222
Q ss_pred ----cceEEEccCCceEEEeeee-cccc
Q 009715 504 ----ETVLSTSSKDKPLLSSKVV-TSSY 526 (528)
Q Consensus 504 ----~~vl~~spd~~~l~s~~~~-gs~~ 526 (528)
..+.++.|-+..+++|+.. |-+|
T Consensus 463 ~~tI~~vn~~HP~~~~~~aG~~s~Gki~ 490 (498)
T KOG4328|consen 463 SSTIPSVNEFHPMRDTLAAGGNSSGKIY 490 (498)
T ss_pred ccccccceeecccccceeccCCccceEE
Confidence 2348889999877766544 5554
No 142
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.86 E-value=3e-18 Score=167.17 Aligned_cols=277 Identities=16% Similarity=0.159 Sum_probs=190.5
Q ss_pred CCCccEEEEeCCCc--EEEEeCCCCCCC---CCCCCeE-EEEecCCcEEEEEccccccccccceeeeeeeccCCcccCCc
Q 009715 139 DGKGTYIIFNVGDA--IFISDLNSQDKD---AKDGHDL-LIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSR 212 (528)
Q Consensus 139 ~~~g~~~~~~~~~~--i~v~~~~~~~~~---~~~~~~l-~~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 212 (528)
..++.+.+|+.... +..+........ ++++..+ +++..++.|++||+.... . .. .+. .+ ..
T Consensus 8 ~~d~~v~~~d~~t~~~~~~~~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~-----~-~~--~~~----~~-~~ 74 (300)
T TIGR03866 8 EKDNTISVIDTATLEVTRTFPVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGE-----V-IG--TLP----SG-PD 74 (300)
T ss_pred cCCCEEEEEECCCCceEEEEECCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCc-----E-EE--ecc----CC-CC
Confidence 34788888886543 333332222111 7888877 566788999999987521 1 10 111 12 23
Q ss_pred eeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCCCC
Q 009715 213 CTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGT 292 (528)
Q Consensus 213 v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spdg~ 292 (528)
+..++|+|+++.+++++..|+.|++||+.+.. .+..+. +...+.+++|+|++.
T Consensus 75 ~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~--------------------------~~~~~~-~~~~~~~~~~~~dg~ 127 (300)
T TIGR03866 75 PELFALHPNGKILYIANEDDNLVTVIDIETRK--------------------------VLAEIP-VGVEPEGMAVSPDGK 127 (300)
T ss_pred ccEEEECCCCCEEEEEcCCCCeEEEEECCCCe--------------------------EEeEee-CCCCcceEEECCCCC
Confidence 56789999998334455678999999997521 111111 123467899999999
Q ss_pred EEEEEeCCC-cEEEEecCCceEEeeecccCCCeEEEEEcCCCCEEEEE-eCCCcEEEEECCCCeEEEEeecCC-------
Q 009715 293 YLATVGRDG-YLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTG-GEDDLVQVWSMEDRKVVAWGEGHN------- 363 (528)
Q Consensus 293 ~l~s~~~dg-~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~sg-~~dg~v~vwd~~~~~~~~~~~~h~------- 363 (528)
+++++..++ .+.+||..+++.+.... .......++|+|++++|+++ ..++.|++||+++++.+..+..+.
T Consensus 128 ~l~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~ 206 (300)
T TIGR03866 128 IVVNTSETTNMAHFIDTKTYEIVDNVL-VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEA 206 (300)
T ss_pred EEEEEecCCCeEEEEeCCCCeEEEEEE-cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeeccccccccc
Confidence 999988765 46778998887765543 23445789999999988654 458999999999988776664221
Q ss_pred CCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEEEeecCCCCCCCeecCCCCCccCCceeee-ec
Q 009715 364 SWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPV-GT 442 (528)
Q Consensus 364 ~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~d~~~~~-g~ 442 (528)
.....++|+| ||+ ..+++.+.++.|.+||+++++.+..+........+.|++++. .+.+ ..
T Consensus 207 ~~~~~i~~s~-------dg~-----~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~g~------~l~~~~~ 268 (300)
T TIGR03866 207 VQPVGIKLTK-------DGK-----TAFVALGPANRVAVVDAKTYEVLDYLLVGQRVWQLAFTPDEK------YLLTTNG 268 (300)
T ss_pred CCccceEECC-------CCC-----EEEEEcCCCCeEEEEECCCCcEEEEEEeCCCcceEEECCCCC------EEEEEcC
Confidence 1235688999 882 234555667789999999988877666556677888888873 3333 34
Q ss_pred CCCCceeeecCCCCceEEeecCCCCeEEEEEeC
Q 009715 443 LQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQ 475 (528)
Q Consensus 443 ~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~~s~ 475 (528)
.++.+.+||+...+.+..++.. ...++++|+|
T Consensus 269 ~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~ 300 (300)
T TIGR03866 269 VSNDVSVIDVAALKVIKSIKVG-RLPWGVVVRP 300 (300)
T ss_pred CCCeEEEEECCCCcEEEEEEcc-cccceeEeCC
Confidence 6788999999999999988865 4458888875
No 143
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.85 E-value=5.4e-20 Score=173.89 Aligned_cols=282 Identities=12% Similarity=0.114 Sum_probs=196.7
Q ss_pred CCCeEEEEecCCcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCC
Q 009715 167 DGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAG 246 (528)
Q Consensus 167 ~~~~l~~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~ 246 (528)
+.+.+++|...|+|-+||+..+..+.... ..|. .|..+|.+|.|+|.+...+++.+.||+|++-|++... .
T Consensus 199 ~~~lva~GdK~G~VG~Wn~~~~~~d~d~v----~~f~----~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i-~ 269 (498)
T KOG4328|consen 199 NRKLVAVGDKGGQVGLWNFGTQEKDKDGV----YLFT----PHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNI-S 269 (498)
T ss_pred cceEEEEccCCCcEEEEecCCCCCccCce----EEec----cCCccccceEecCCChhheeeeccCceeeeeeecchh-h
Confidence 34688999999999999997432221111 2222 3999999999999988899999999999999998521 1
Q ss_pred CCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCCCCEEEEEeCCCcEEEEecCCceE-EeeecccCCCeE
Q 009715 247 DSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQL-ICGGKSYYGALL 325 (528)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~v~ 325 (528)
+..+ ..+.....+..+.|+.+...++.+..=|...+||+++... ...+.-|...|.
T Consensus 270 e~v~-----------------------s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~ 326 (498)
T KOG4328|consen 270 EEVL-----------------------SLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKIT 326 (498)
T ss_pred HHHh-----------------------hcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccc
Confidence 1111 1111124567888988777788888778999999987654 556677888999
Q ss_pred EEEEcCCC-CEEEEEeCCCcEEEEECCCC--e--EEEEeecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeE
Q 009715 326 CCAWSMDG-KYILTGGEDDLVQVWSMEDR--K--VVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRL 400 (528)
Q Consensus 326 ~l~~sp~g-~~l~sg~~dg~v~vwd~~~~--~--~~~~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i 400 (528)
.++++|.. .+||+++.|++++|||++.- + ++.....|...|.++.|+| +| -.|++.+.|..|
T Consensus 327 sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSP-------s~------gtl~TT~~D~~I 393 (498)
T KOG4328|consen 327 SVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSP-------SG------GTLLTTCQDNEI 393 (498)
T ss_pred eeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcC-------CC------CceEeeccCCce
Confidence 99999954 57899999999999999873 2 2233345999999999999 65 359999999999
Q ss_pred EEEEc----cCCeEEEEeecCCCCCCCeecCCCCCccC-CceeeeecCCCCceeeecCCCCceEEeecCCC-CeEEE-EE
Q 009715 401 LLWDL----EMDEIVVPLRRGPLGGSPTFSTGSQSAHW-DNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTE-PLSGL-IF 473 (528)
Q Consensus 401 ~lwd~----~~~~~~~~~~~~~~~~~~~~s~~~~~~~~-d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~-~V~~l-~~ 473 (528)
+|||. ........+.+... ..-..++-.....+ ...+.+|.....+-++|-...+.+..+..... .|.++ +|
T Consensus 394 Rv~dss~~sa~~~p~~~I~Hn~~-t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~ 472 (498)
T KOG4328|consen 394 RVFDSSCISAKDEPLGTIPHNNR-TGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEF 472 (498)
T ss_pred EEeecccccccCCccceeeccCc-ccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceee
Confidence 99998 34444444544211 11111111111112 25568888888899998888776666544333 45554 68
Q ss_pred eC--CeEEEEE-CCCeEEEEeCCC
Q 009715 474 TQ--ESVLTVC-REGHIKIWMRPG 494 (528)
Q Consensus 474 s~--d~l~t~s-~Dg~i~iW~~~~ 494 (528)
+| +.+++|+ .-|.|.||.-.+
T Consensus 473 HP~~~~~~aG~~s~Gki~vft~k~ 496 (498)
T KOG4328|consen 473 HPMRDTLAAGGNSSGKIYVFTNKK 496 (498)
T ss_pred cccccceeccCCccceEEEEecCC
Confidence 98 3355554 668888886543
No 144
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.85 E-value=6.7e-20 Score=174.57 Aligned_cols=219 Identities=13% Similarity=0.189 Sum_probs=184.6
Q ss_pred eeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCCCC
Q 009715 213 CTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGT 292 (528)
Q Consensus 213 v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spdg~ 292 (528)
-.|++...... ++++|+..+.|+|||++. ...++.+..|+..|+++.|+....
T Consensus 82 ~~Cv~~~s~S~-y~~sgG~~~~Vkiwdl~~--------------------------kl~hr~lkdh~stvt~v~YN~~De 134 (673)
T KOG4378|consen 82 AFCVACASQSL-YEISGGQSGCVKIWDLRA--------------------------KLIHRFLKDHQSTVTYVDYNNTDE 134 (673)
T ss_pred HHHHhhhhcce-eeeccCcCceeeehhhHH--------------------------HHHhhhccCCcceeEEEEecCCcc
Confidence 34444444446 899999999999999984 123455677899999999999889
Q ss_pred EEEEEeCCCcEEEEecCCceEEeeeccc-CCCeEEEEEcCCCCE-EEEEeCCCcEEEEECCCCeEEEE-eecCCCCeEEE
Q 009715 293 YLATVGRDGYLRVFDYSKEQLICGGKSY-YGALLCCAWSMDGKY-ILTGGEDDLVQVWSMEDRKVVAW-GEGHNSWVSGV 369 (528)
Q Consensus 293 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~-~~~v~~l~~sp~g~~-l~sg~~dg~v~vwd~~~~~~~~~-~~~h~~~V~~v 369 (528)
+||+++..|.|.|..+.++.....+... ...|.-+.|+|..++ |.+++.+|.|.+||+....++.. .+.|..+...|
T Consensus 135 yiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gi 214 (673)
T KOG4378|consen 135 YIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGI 214 (673)
T ss_pred eeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcc
Confidence 9999999999999999998877776543 245668899998775 55789999999999998777654 45799999999
Q ss_pred EEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEEEeecCCCCCCCeecCCCCCccCCceeeeecCCCCcee
Q 009715 370 AFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSM 449 (528)
Q Consensus 370 ~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~d~~~~~g~~~~~~~~ 449 (528)
+|+|. +. .+|++.+.|++|.+||++..+....+....+...++|.++| ..+.+|+..+.+..
T Consensus 215 cfsps------ne------~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G------~~L~aG~s~G~~i~ 276 (673)
T KOG4378|consen 215 CFSPS------NE------ALLVSVGYDKKINIYDIRSQASTDRLTYSHPLSTVAFSECG------TYLCAGNSKGELIA 276 (673)
T ss_pred eecCC------cc------ceEEEecccceEEEeecccccccceeeecCCcceeeecCCc------eEEEeecCCceEEE
Confidence 99992 33 68999999999999999999988888888899999999998 56789999999999
Q ss_pred eecCCC-CceEEeecCCCCeEEEEEeCC
Q 009715 450 RDVPKL-SPLVAHRVHTEPLSGLIFTQE 476 (528)
Q Consensus 450 ~d~~~~-~~~~~~~~h~~~V~~l~~s~d 476 (528)
||++.. .|+..+..|...|++|+|-|.
T Consensus 277 YD~R~~k~Pv~v~sah~~sVt~vafq~s 304 (673)
T KOG4378|consen 277 YDMRSTKAPVAVRSAHDASVTRVAFQPS 304 (673)
T ss_pred EecccCCCCceEeeecccceeEEEeeec
Confidence 999865 589999999999999999875
No 145
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=2.5e-19 Score=161.44 Aligned_cols=240 Identities=10% Similarity=0.133 Sum_probs=178.9
Q ss_pred ccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEE
Q 009715 208 VNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAF 287 (528)
Q Consensus 208 ~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 287 (528)
.|.+-|+|+.|.+-|+ .+|+|+.|++|+|||.+.+. +.......|+.|.+.|..+.|
T Consensus 11 ~h~DlihdVs~D~~GR-RmAtCSsDq~vkI~d~~~~s----------------------~~W~~Ts~Wrah~~Si~rV~W 67 (361)
T KOG2445|consen 11 GHKDLIHDVSFDFYGR-RMATCSSDQTVKIWDSTSDS----------------------GTWSCTSSWRAHDGSIWRVVW 67 (361)
T ss_pred CCcceeeeeeecccCc-eeeeccCCCcEEEEeccCCC----------------------CceEEeeeEEecCCcEEEEEe
Confidence 3889999999999999 99999999999999975432 235667789999999999999
Q ss_pred CC--CCCEEEEEeCCCcEEEEecCC---------ceEEeeecccCCCeEEEEEcC--CCCEEEEEeCCCcEEEEECCCCe
Q 009715 288 ST--DGTYLATVGRDGYLRVFDYSK---------EQLICGGKSYYGALLCCAWSM--DGKYILTGGEDDLVQVWSMEDRK 354 (528)
Q Consensus 288 sp--dg~~l~s~~~dg~i~vwd~~~---------~~~~~~~~~~~~~v~~l~~sp--~g~~l~sg~~dg~v~vwd~~~~~ 354 (528)
.+ -|+.+|+++.|+++.||.-.. -....++......|+.|.|.| -|-.||+++.||.++||+.-.--
T Consensus 68 AhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~ 147 (361)
T KOG2445|consen 68 AHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPM 147 (361)
T ss_pred cCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCcc
Confidence 76 699999999999999997621 123445666678899999999 57789999999999999875432
Q ss_pred ------EEEEee-------cCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCC-----CeEEEEEccCCeEEEEeec
Q 009715 355 ------VVAWGE-------GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQD-----TRLLLWDLEMDEIVVPLRR 416 (528)
Q Consensus 355 ------~~~~~~-------~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D-----~~i~lwd~~~~~~~~~~~~ 416 (528)
....++ .+.....||.|+|. - ....+|+.|+.+ +.++||......
T Consensus 148 nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~s-------r---~~~p~iAvgs~e~a~~~~~~~Iye~~e~~------- 210 (361)
T KOG2445|consen 148 NLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPS-------R---MHEPLIAVGSDEDAPHLNKVKIYEYNENG------- 210 (361)
T ss_pred ccccchhhhhhhhccCCcccccCcceEEeeccc-------c---ccCceEEEEcccCCccccceEEEEecCCc-------
Confidence 122222 35667889999872 1 111356666655 367777654322
Q ss_pred CCCCCCCeecCCCCCccCCceeeeecCCCCceeeecCCCCceEEeecCCCCeEEEEEeCC------eEEEEECCCeEEEE
Q 009715 417 GPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE------SVLTVCREGHIKIW 490 (528)
Q Consensus 417 ~~~~~~~~~s~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~~s~d------~l~t~s~Dg~i~iW 490 (528)
++...+..+.+|.++|++|+|.|+ .|++++.|| |+||
T Consensus 211 ------------------------------------rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~ 253 (361)
T KOG2445|consen 211 ------------------------------------RKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIF 253 (361)
T ss_pred ------------------------------------ceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEE
Confidence 112234456689999999999996 299999999 9999
Q ss_pred eCCCCc----------------------cccCCCccce--EEEccCCceEEEeeeecc
Q 009715 491 MRPGVA----------------------ESQSSSSETV--LSTSSKDKPLLSSKVVTS 524 (528)
Q Consensus 491 ~~~~~~----------------------~~~~~~~~~v--l~~spd~~~l~s~~~~gs 524 (528)
++.... .....|...| +.+.-.|..|++.+.+|-
T Consensus 254 ~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~ 311 (361)
T KOG2445|consen 254 KVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGC 311 (361)
T ss_pred EEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCce
Confidence 987421 0112566677 777888889988887764
No 146
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=8.3e-20 Score=172.13 Aligned_cols=258 Identities=14% Similarity=0.160 Sum_probs=180.5
Q ss_pred CCCCCeEEEEecCCc-----EEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeC-------CCcEEEEEeCC
Q 009715 165 AKDGHDLLIGLNSGD-----VYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPG-------GDGAFVVGHAD 232 (528)
Q Consensus 165 ~~~~~~l~~g~~~G~-----v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~-------g~~~l~tg~~d 232 (528)
-|..+.++++-.+.. ||+|+-.. .......+. .-...-.|++|.-. | +++|.|..|
T Consensus 134 ~psDnlIl~ar~eddvs~LEvYVyn~~e----------~nlYvHHD~-ilpafPLC~ewld~~~~~~~~g-NyvAiGtmd 201 (463)
T KOG0270|consen 134 KPSDNLILCARNEDDVSYLEVYVYNEEE----------ENLYVHHDF-ILPAFPLCIEWLDHGSKSGGAG-NYVAIGTMD 201 (463)
T ss_pred ccCCcEEEEeeccCCceEEEEEEEcCCC----------cceeEecce-eccCcchhhhhhhcCCCCCCCc-ceEEEeccC
Confidence 677788888776553 44554322 001111111 11233467777533 3 399999999
Q ss_pred ceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECC-CCCEEEEEeCCCcEEEEecCCc
Q 009715 233 GNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST-DGTYLATVGRDGYLRVFDYSKE 311 (528)
Q Consensus 233 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp-dg~~l~s~~~dg~i~vwd~~~~ 311 (528)
-.|.|||+.--......+..-....+.. ..+...-..-.+|+..|..++|+. ..+.||+|+.|.+|++||+.++
T Consensus 202 p~IeIWDLDI~d~v~P~~~LGs~~sk~~-----~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g 276 (463)
T KOG0270|consen 202 PEIEIWDLDIVDAVLPCVTLGSKASKKK-----KKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTG 276 (463)
T ss_pred ceeEEeccccccccccceeechhhhhhh-----hhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCC
Confidence 9999999975322222221110000000 000111122356889999999988 4668999999999999999999
Q ss_pred eEEeeecccCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCeEEEEEecCCCCCCCCCCccceeEE
Q 009715 312 QLICGGKSYYGALLCCAWSM-DGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYR 390 (528)
Q Consensus 312 ~~~~~~~~~~~~v~~l~~sp-~g~~l~sg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~ 390 (528)
++...+..|.+.|.+++|+| ...+|++|+.|++|.+.|.+........-.-.+.|..++|+|+ .. ..
T Consensus 277 ~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~------se------~~ 344 (463)
T KOG0270|consen 277 KPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPH------SE------NS 344 (463)
T ss_pred CcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCC------Cc------ee
Confidence 99999998999999999999 4568999999999999999963322222225678999999983 22 57
Q ss_pred EEEEeCCCeEEEEEccCCeEEEEeecCCCCCCCeecCCCCCccCCceeeeecCCCCceeeecCCCCceEEeecCCCCeEE
Q 009715 391 FGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSG 470 (528)
Q Consensus 391 l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~ 470 (528)
++++..||+|+-+|+|... +++.+++.|.++|.+
T Consensus 345 f~~~tddG~v~~~D~R~~~----------------------------------------------~~vwt~~AHd~~ISg 378 (463)
T KOG0270|consen 345 FFVSTDDGTVYYFDIRNPG----------------------------------------------KPVWTLKAHDDEISG 378 (463)
T ss_pred EEEecCCceEEeeecCCCC----------------------------------------------CceeEEEeccCCcce
Confidence 8888999999999998642 355567789999999
Q ss_pred EEEeCC---eEEEEECCCeEEEEeCCCCcc
Q 009715 471 LIFTQE---SVLTVCREGHIKIWMRPGVAE 497 (528)
Q Consensus 471 l~~s~d---~l~t~s~Dg~i~iW~~~~~~~ 497 (528)
|.++.. .++|++.|+.|++|++.....
T Consensus 379 l~~n~~~p~~l~t~s~d~~Vklw~~~~~~~ 408 (463)
T KOG0270|consen 379 LSVNIQTPGLLSTASTDKVVKLWKFDVDSP 408 (463)
T ss_pred EEecCCCCcceeeccccceEEEEeecCCCC
Confidence 999874 599999999999999876553
No 147
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.85 E-value=1e-19 Score=162.45 Aligned_cols=234 Identities=17% Similarity=0.203 Sum_probs=164.6
Q ss_pred cCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEEC
Q 009715 209 NNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFS 288 (528)
Q Consensus 209 h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 288 (528)
+-+.|.|+.|.|+++ .+++-. |..|.+|++.........+... .-..|+...++-+|+
T Consensus 122 avg~i~cvew~Pns~-klasm~-dn~i~l~~l~ess~~vaev~ss--------------------~s~e~~~~ftsg~Ws 179 (370)
T KOG1007|consen 122 AVGKINCVEWEPNSD-KLASMD-DNNIVLWSLDESSKIVAEVLSS--------------------ESAEMRHSFTSGAWS 179 (370)
T ss_pred HhCceeeEEEcCCCC-eeEEec-cCceEEEEcccCcchheeeccc--------------------ccccccceecccccC
Confidence 556899999999998 666544 8899999998643211111100 001145667788999
Q ss_pred C--CCCEEEEEeCCCcEEEEecCCceEEeee-cccCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCC-CeEEEEeecCC
Q 009715 289 T--DGTYLATVGRDGYLRVFDYSKEQLICGG-KSYYGALLCCAWSMDGK-YILTGGEDDLVQVWSMED-RKVVAWGEGHN 363 (528)
Q Consensus 289 p--dg~~l~s~~~dg~i~vwd~~~~~~~~~~-~~~~~~v~~l~~sp~g~-~l~sg~~dg~v~vwd~~~-~~~~~~~~~h~ 363 (528)
| |++.+++. .|+++..||+++.++...+ ..|...|..+.|+|+-+ +|++|++|+.|+|||.+. ..++..+.+|.
T Consensus 180 pHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~Hs 258 (370)
T KOG1007|consen 180 PHHDGNQVATT-SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHS 258 (370)
T ss_pred CCCccceEEEe-CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCc
Confidence 9 78888776 5789999999988776555 45888899999999876 678999999999999987 56889999999
Q ss_pred CCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEEEeecCCCCCCCeecCCCCCccCCceeeeecC
Q 009715 364 SWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTL 443 (528)
Q Consensus 364 ~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~d~~~~~g~~ 443 (528)
.||.+|.|+|. .. .++++++.|..|.+|....-.....+........ .++.
T Consensus 259 HWvW~VRfn~~------hd------qLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese---~e~~-------------- 309 (370)
T KOG1007|consen 259 HWVWAVRFNPE------HD------QLILSGGSDSAVNLSCASSVSSEQQIEFEDDESE---SEDE-------------- 309 (370)
T ss_pred eEEEEEEecCc------cc------eEEEecCCCceeEEEecccccccccccccccccc---Ccch--------------
Confidence 99999999983 22 5999999999999998654332222222110000 0000
Q ss_pred CCCceeeecCCCCceEEeecCCCCeEEEEEeCC---eEEEEECCCeEEEEeCCCC
Q 009715 444 QPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE---SVLTVCREGHIKIWMRPGV 495 (528)
Q Consensus 444 ~~~~~~~d~~~~~~~~~~~~h~~~V~~l~~s~d---~l~t~s~Dg~i~iW~~~~~ 495 (528)
+..-+..-+ .-..+.++..|++.|++++|+.. .+++-+.||.+.|=.++..
T Consensus 310 dseer~kpL-~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~r~ 363 (370)
T KOG1007|consen 310 DSEERVKPL-QDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVPRF 363 (370)
T ss_pred hhHHhcccc-cccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCChh
Confidence 000000000 11245577789999999999973 3889999999999887654
No 148
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=1.9e-19 Score=183.39 Aligned_cols=238 Identities=15% Similarity=0.196 Sum_probs=183.1
Q ss_pred CCCCCCCccccCCcccCCcccCCCCCCcceeeeCCCccEEEEeCCCcE---EEEeCCCCCCC---CCCCCeEEEEecCCc
Q 009715 106 GGGNGGSKSISGSSRIGSLGASSSSTSMTNTNFDGKGTYIIFNVGDAI---FISDLNSQDKD---AKDGHDLLIGLNSGD 179 (528)
Q Consensus 106 ~gh~~~v~~v~~s~~~~~~~~s~s~~s~~~~~~~~~g~~~~~~~~~~i---~v~~~~~~~~~---~~~~~~l~~g~~~G~ 179 (528)
..|+++-+.|++.+ +|.++.+++ .+|.+..|+..... ...+. .++.. ..+.+.|++|+.+++
T Consensus 10 yaht~G~t~i~~d~-~gefi~tcg----------sdg~ir~~~~~sd~e~P~ti~~-~g~~v~~ia~~s~~f~~~s~~~t 77 (933)
T KOG1274|consen 10 YAHTGGLTLICYDP-DGEFICTCG----------SDGDIRKWKTNSDEEEPETIDI-SGELVSSIACYSNHFLTGSEQNT 77 (933)
T ss_pred hhccCceEEEEEcC-CCCEEEEec----------CCCceEEeecCCcccCCchhhc-cCceeEEEeecccceEEeeccce
Confidence 37888888888877 443433333 36666666654431 11111 11111 566779999999999
Q ss_pred EEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCcccccccccee
Q 009715 180 VYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQF 259 (528)
Q Consensus 180 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~ 259 (528)
|.+|.+.....+ .+. .+ -.-++++++|+.+|. ++|.|+.|-.|++.+...
T Consensus 78 v~~y~fps~~~~---~iL--~R-------ftlp~r~~~v~g~g~-~iaagsdD~~vK~~~~~D----------------- 127 (933)
T KOG1274|consen 78 VLRYKFPSGEED---TIL--AR-------FTLPIRDLAVSGSGK-MIAAGSDDTAVKLLNLDD----------------- 127 (933)
T ss_pred EEEeeCCCCCcc---cee--ee-------eeccceEEEEecCCc-EEEeecCceeEEEEeccc-----------------
Confidence 999998762111 011 11 345799999999999 999999999999999875
Q ss_pred EEeccCCCCCCCeEEEeecCCCeEEEEECCCCCEEEEEeCCCcEEEEecCCceEEeeeccc--------CCCeEEEEEcC
Q 009715 260 SVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSY--------YGALLCCAWSM 331 (528)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~--------~~~v~~l~~sp 331 (528)
....+.+.+|.++|.++.|+|++++||+.+.||.|++||+.++.+...+.+- ...+..++|+|
T Consensus 128 ---------~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~P 198 (933)
T KOG1274|consen 128 ---------SSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHP 198 (933)
T ss_pred ---------cchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecC
Confidence 2456778889999999999999999999999999999999988876655431 34567799999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEeec--CCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccC
Q 009715 332 DGKYILTGGEDDLVQVWSMEDRKVVAWGEG--HNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEM 407 (528)
Q Consensus 332 ~g~~l~sg~~dg~v~vwd~~~~~~~~~~~~--h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~ 407 (528)
++..++..+.|+.|++|+....+....+.. |...+..++|+| +| .+|++++.||.|.|||..+
T Consensus 199 k~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsP-------nG------~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 199 KGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSP-------NG------KYIAASTLDGQILVWNVDT 263 (933)
T ss_pred CCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcC-------CC------cEEeeeccCCcEEEEeccc
Confidence 988888888999999999999887777653 445599999999 99 8999999999999999987
No 149
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=3.3e-19 Score=168.74 Aligned_cols=276 Identities=14% Similarity=0.199 Sum_probs=203.9
Q ss_pred CCCCCeEEEEecCCcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCC
Q 009715 165 AKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDG 244 (528)
Q Consensus 165 ~~~~~~l~~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~ 244 (528)
||....|++++.||.++||-+..+... .+...++ ...+|.+..|.|+|...+++++....++.||+.+..
T Consensus 222 Hp~~plllvaG~d~~lrifqvDGk~N~----~lqS~~l------~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak 291 (514)
T KOG2055|consen 222 HPTAPLLLVAGLDGTLRIFQVDGKVNP----KLQSIHL------EKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAK 291 (514)
T ss_pred cCCCceEEEecCCCcEEEEEecCccCh----hheeeee------ccCccceeeecCCCceEEEecccceEEEEeeccccc
Confidence 899999999999999999998864322 2222332 566899999999999789999999999999997622
Q ss_pred CCCCccccccccceeEEeccCCCCCCCeEEEeec-CCCeEEEEECCCCCEEEEEeCCCcEEEEecCCceEEeeecccCCC
Q 009715 245 AGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHIC-QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGA 323 (528)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~spdg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~ 323 (528)
.. .+....++ +..+..+..++++++|+..+..|.|.+....+++.+..++ ..+.
T Consensus 292 ~~------------------------k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~ 346 (514)
T KOG2055|consen 292 VT------------------------KLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGV 346 (514)
T ss_pred cc------------------------cccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccE
Confidence 11 11111111 2467788999999999999999999999999999999887 5788
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCeE--EEEEecCCCCCCCCCCccceeEEEEEEeCCCeEE
Q 009715 324 LLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVS--GVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLL 401 (528)
Q Consensus 324 v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~~~~~~~~h~~~V~--~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~ 401 (528)
|..++|+.|++.|++++.+|.|.+||+++..+++.+. -.+.|. +++.++ +| .+|++|+..|.|.
T Consensus 347 v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~-D~G~v~gts~~~S~-------ng------~ylA~GS~~GiVN 412 (514)
T KOG2055|consen 347 VSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFV-DDGSVHGTSLCISL-------NG------SYLATGSDSGIVN 412 (514)
T ss_pred EeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEe-ecCccceeeeeecC-------CC------ceEEeccCcceEE
Confidence 9999999999999999999999999999999999887 444454 455556 77 7999999999999
Q ss_pred EEEccC------CeEEEEeec-CCCCCCCeecCCCCCccCCceeeeecCCCCceeeecCCCCceEEee---cCCCCeEEE
Q 009715 402 LWDLEM------DEIVVPLRR-GPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHR---VHTEPLSGL 471 (528)
Q Consensus 402 lwd~~~------~~~~~~~~~-~~~~~~~~~s~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~---~h~~~V~~l 471 (528)
|||..+ .+++..+.. ...+..+.|+++.+.-.. ..-.....+++-.++.......+. ..-+.|+|+
T Consensus 413 IYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAi----aS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~ 488 (514)
T KOG2055|consen 413 IYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAI----ASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCM 488 (514)
T ss_pred EeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhh----hhhccccceEEEeccceeeeccCCCCCCcccceEEE
Confidence 999654 233443332 246778889988863211 111122333444444332222222 123468999
Q ss_pred EEeCCe--EEEEECCCeEEEEeCC
Q 009715 472 IFTQES--VLTVCREGHIKIWMRP 493 (528)
Q Consensus 472 ~~s~d~--l~t~s~Dg~i~iW~~~ 493 (528)
+|+|.+ |+.|-.+|.|.+|.+.
T Consensus 489 aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 489 AFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred EecCCCceEEeecCCCceeeEeec
Confidence 999963 8888899999999874
No 150
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.84 E-value=3.9e-19 Score=173.79 Aligned_cols=147 Identities=16% Similarity=0.312 Sum_probs=119.5
Q ss_pred CeEEEEEcC-CCCEEEEEeCCCcEEEEECCCC-------eEEEEeecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEE
Q 009715 323 ALLCCAWSM-DGKYILTGGEDDLVQVWSMEDR-------KVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSV 394 (528)
Q Consensus 323 ~v~~l~~sp-~g~~l~sg~~dg~v~vwd~~~~-------~~~~~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~ 394 (528)
.|..+.|.| |...|+++++||.|++|.+..+ .+...+.+|...|+.+.|+|. .. ..|+++
T Consensus 629 ~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPL------Aa------dvLa~a 696 (1012)
T KOG1445|consen 629 LVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPL------AA------DVLAVA 696 (1012)
T ss_pred eeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecch------hh------hHhhhh
Confidence 357888888 6778999999999999998653 345667889999999999993 22 479999
Q ss_pred eCCCeEEEEEccCCeEEEEeecCCCCCCCeecCCCCCccCCceeeeecCCCCceeeecCCCCceEEeecCCCCeEEEEEe
Q 009715 395 GQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFT 474 (528)
Q Consensus 395 s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~~s 474 (528)
+.|.+|++||+++.+... .+.+|++.|.+++|+
T Consensus 697 syd~Ti~lWDl~~~~~~~-----------------------------------------------~l~gHtdqIf~~AWS 729 (1012)
T KOG1445|consen 697 SYDSTIELWDLANAKLYS-----------------------------------------------RLVGHTDQIFGIAWS 729 (1012)
T ss_pred hccceeeeeehhhhhhhh-----------------------------------------------eeccCcCceeEEEEC
Confidence 999999999999876432 455799999999999
Q ss_pred CCe--EEEEECCCeEEEEeCCCCccccCCCccce------EEEccCCceEEEeeeecccccC
Q 009715 475 QES--VLTVCREGHIKIWMRPGVAESQSSSSETV------LSTSSKDKPLLSSKVVTSSYRQ 528 (528)
Q Consensus 475 ~d~--l~t~s~Dg~i~iW~~~~~~~~~~~~~~~v------l~~spd~~~l~s~~~~gs~~~~ 528 (528)
||+ ++|.|.||+|++++..+..+......+.+ +.|.-||++|+..+-+-++-+|
T Consensus 730 pdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQ 791 (1012)
T KOG1445|consen 730 PDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQ 791 (1012)
T ss_pred CCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhh
Confidence 996 99999999999999887776555444443 7889999999888776655554
No 151
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.84 E-value=7.8e-19 Score=158.60 Aligned_cols=254 Identities=13% Similarity=0.135 Sum_probs=195.2
Q ss_pred CCCCCeEEEEecCCcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCC
Q 009715 165 AKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDG 244 (528)
Q Consensus 165 ~~~~~~l~~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~ 244 (528)
++....|++++.||.+++||+.... +. +.+ .|..++.+++|.++.. +++|+.||.|+.+|+.+.
T Consensus 22 ~~~~~~LLvssWDgslrlYdv~~~~------l~--~~~-----~~~~plL~c~F~d~~~--~~~G~~dg~vr~~Dln~~- 85 (323)
T KOG1036|consen 22 SPSSSDLLVSSWDGSLRLYDVPANS------LK--LKF-----KHGAPLLDCAFADEST--IVTGGLDGQVRRYDLNTG- 85 (323)
T ss_pred cCcCCcEEEEeccCcEEEEeccchh------hh--hhe-----ecCCceeeeeccCCce--EEEeccCceEEEEEecCC-
Confidence 4677889999999999999998621 11 111 2899999999998765 999999999999999863
Q ss_pred CCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCCCCEEEEEeCCCcEEEEecCCceEEeeecccCCCe
Q 009715 245 AGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGAL 324 (528)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v 324 (528)
....+..|..+|.||.+++-...+++|+-|+.|++||.+.......+. ....|
T Consensus 86 --------------------------~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkV 138 (323)
T KOG1036|consen 86 --------------------------NEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD-QGKKV 138 (323)
T ss_pred --------------------------cceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccc-cCceE
Confidence 223345578999999999977789999999999999999755555554 34578
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEee--cCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEE
Q 009715 325 LCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGE--GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLL 402 (528)
Q Consensus 325 ~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~~~~~~~--~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~l 402 (528)
.++... +..|++|+.|..|.+||++......+.+ .-.-.+.+|++-| ++ .=++.++-||+|.+
T Consensus 139 y~~~v~--g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~p-------n~------eGy~~sSieGRVav 203 (323)
T KOG1036|consen 139 YCMDVS--GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVP-------NG------EGYVVSSIEGRVAV 203 (323)
T ss_pred EEEecc--CCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEec-------CC------CceEEEeecceEEE
Confidence 888765 6789999999999999999865443222 2345689999988 55 34788899999988
Q ss_pred EEccCC----eEEEEeecC----------CCCCCCeecCCCCCccCCceeeeecCCCCceeeecCCCCceEEeecCCCCe
Q 009715 403 WDLEMD----EIVVPLRRG----------PLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPL 468 (528)
Q Consensus 403 wd~~~~----~~~~~~~~~----------~~~~~~~~s~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V 468 (528)
=.+... +....++.+ .++.+++|++-- .++.+|.-++.+.+||....+.+..+......|
T Consensus 204 E~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~------~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI 277 (323)
T KOG1036|consen 204 EYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIH------GTFATGGSDGIVNIWDLFNRKRLKQLAKYETSI 277 (323)
T ss_pred EccCCchHHhhhceeEEeeecccCCceEEEEeceeEecccc------ceEEecCCCceEEEccCcchhhhhhccCCCCce
Confidence 666554 222233322 245667776653 567899999999999999999998888888889
Q ss_pred EEEEEeCCe--EEEEE
Q 009715 469 SGLIFTQES--VLTVC 482 (528)
Q Consensus 469 ~~l~~s~d~--l~t~s 482 (528)
..++|+.|+ |+.++
T Consensus 278 ~slsfs~dG~~LAia~ 293 (323)
T KOG1036|consen 278 SSLSFSMDGSLLAIAS 293 (323)
T ss_pred EEEEeccCCCeEEEEe
Confidence 999999986 66665
No 152
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=2.8e-18 Score=149.90 Aligned_cols=253 Identities=17% Similarity=0.222 Sum_probs=181.5
Q ss_pred CCCCCeEEEEecCCcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCC
Q 009715 165 AKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDG 244 (528)
Q Consensus 165 ~~~~~~l~~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~ 244 (528)
+|.+++|++|..+|+|.+..+........+..-....+. ...|.++|+.++|..+ +|++|+ ||.|+=|..+...
T Consensus 19 sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~--eqahdgpiy~~~f~d~---~Lls~g-dG~V~gw~W~E~~ 92 (325)
T KOG0649|consen 19 SPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVP--EQAHDGPIYYLAFHDD---FLLSGG-DGLVYGWEWNEEE 92 (325)
T ss_pred CCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceee--ccccCCCeeeeeeehh---heeecc-CceEEEeeehhhh
Confidence 688899999999999999998764322211111101111 1359999999999833 566655 5999999876532
Q ss_pred CCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCCCCEEEEEeCCCcEEEEecCCceEEeeecccCCCe
Q 009715 245 AGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGAL 324 (528)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v 324 (528)
......+..+... |.+.-...--.|+++...|..+-++.++.|+.++-||+++|+....+++|.+.|
T Consensus 93 es~~~K~lwe~~~-------------P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYv 159 (325)
T KOG0649|consen 93 ESLATKRLWEVKI-------------PMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYV 159 (325)
T ss_pred hhccchhhhhhcC-------------ccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCccee
Confidence 2111111111110 111000112578999999977777777799999999999999999999999999
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeec---------C-CCCeEEEEEecCCCCCCCCCCccceeEEEEEE
Q 009715 325 LCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEG---------H-NSWVSGVAFDSYWSQPNSDGTAETVMYRFGSV 394 (528)
Q Consensus 325 ~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~~~~~~~~---------h-~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~ 394 (528)
.++.--.....+++|++||+++|||+++++++..+.. | ..||.+++-+. .+|+.|
T Consensus 160 H~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~e---------------dWlvCG 224 (325)
T KOG0649|consen 160 HSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNE---------------DWLVCG 224 (325)
T ss_pred eeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccC---------------ceEEec
Confidence 9999855555799999999999999999998887752 2 34677887754 356555
Q ss_pred eCCCeEEEEEccCCeEEEEeecCCCCCCCeecCCCCCccCCceeeeecCCCCceeeecCCCCceEEeecCCCCeEEEEEe
Q 009715 395 GQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFT 474 (528)
Q Consensus 395 s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~~s 474 (528)
+ ...+.+|.++..++...+.. .++|..+.|-
T Consensus 225 g-Gp~lslwhLrsse~t~vfpi------------------------------------------------pa~v~~v~F~ 255 (325)
T KOG0649|consen 225 G-GPKLSLWHLRSSESTCVFPI------------------------------------------------PARVHLVDFV 255 (325)
T ss_pred C-CCceeEEeccCCCceEEEec------------------------------------------------ccceeEeeee
Confidence 4 56799999998887765543 3567889999
Q ss_pred CCeEEEEECCCeEEEEeCCCCccccC
Q 009715 475 QESVLTVCREGHIKIWMRPGVAESQS 500 (528)
Q Consensus 475 ~d~l~t~s~Dg~i~iW~~~~~~~~~~ 500 (528)
.|.++.++.-+.|.-|.+.+......
T Consensus 256 ~d~vl~~G~g~~v~~~~l~Gvl~a~i 281 (325)
T KOG0649|consen 256 DDCVLIGGEGNHVQSYTLNGVLQANI 281 (325)
T ss_pred cceEEEeccccceeeeeeccEEEEec
Confidence 99999999989999999988665444
No 153
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=2.3e-20 Score=194.61 Aligned_cols=239 Identities=17% Similarity=0.252 Sum_probs=184.0
Q ss_pred CeEEEEecCCcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCC
Q 009715 169 HDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDS 248 (528)
Q Consensus 169 ~~l~~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~ 248 (528)
..++.|..||.|.+||....+.+... ........|.+.|..+.|++...++||+|+.||.|.|||+.+.....
T Consensus 81 GlIaGG~edG~I~ly~p~~~~~~~~~------~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~- 153 (1049)
T KOG0307|consen 81 GLIAGGLEDGNIVLYDPASIIANASE------EVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPF- 153 (1049)
T ss_pred ceeeccccCCceEEecchhhccCcch------HHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCC-
Confidence 45788899999999998763222111 12222334999999999999998899999999999999998632211
Q ss_pred ccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECC-CCCEEEEEeCCCcEEEEecCCceEEeeecccCC--CeE
Q 009715 249 SFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST-DGTYLATVGRDGYLRVFDYSKEQLICGGKSYYG--ALL 325 (528)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp-dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~--~v~ 325 (528)
.+. . ..-...|.+++|+. ....|++++.+|.+.|||++..+.+..+..+.+ .+.
T Consensus 154 ~~~--~---------------------~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S 210 (1049)
T KOG0307|consen 154 TPG--S---------------------QAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCS 210 (1049)
T ss_pred CCC--C---------------------CCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCcccee
Confidence 111 0 00137899999998 566899999999999999998887777665544 467
Q ss_pred EEEEcCCCC-EEEEEeCCC---cEEEEECCCC-eEEEEeecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeE
Q 009715 326 CCAWSMDGK-YILTGGEDD---LVQVWSMEDR-KVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRL 400 (528)
Q Consensus 326 ~l~~sp~g~-~l~sg~~dg---~v~vwd~~~~-~~~~~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i 400 (528)
.|+|+|+.- .|+++++|. .|.+||+|.- .+++.+++|...|.++.|++. |. .+|+|++.|++|
T Consensus 211 ~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~------D~------~lllSsgkD~~i 278 (1049)
T KOG0307|consen 211 VLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQ------DP------RLLLSSGKDNRI 278 (1049)
T ss_pred eeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCC------Cc------hhhhcccCCCCe
Confidence 899999764 566666654 6999999874 578888999999999999983 54 689999999999
Q ss_pred EEEEccCCeEEEEeecCCCCCCCeecCCCCCccCCceeeeecCCCCceeeecCCCCceEEeecCCCCeEEEEEeCC---e
Q 009715 401 LLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE---S 477 (528)
Q Consensus 401 ~lwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~~s~d---~ 477 (528)
.+|+..+++.+..+.. ....+..+.|+|. .
T Consensus 279 i~wN~~tgEvl~~~p~-----------------------------------------------~~nW~fdv~w~pr~P~~ 311 (1049)
T KOG0307|consen 279 ICWNPNTGEVLGELPA-----------------------------------------------QGNWCFDVQWCPRNPSV 311 (1049)
T ss_pred eEecCCCceEeeecCC-----------------------------------------------CCcceeeeeecCCCcch
Confidence 9999999998766643 2456788889885 3
Q ss_pred EEEEECCCeEEEEeCCCCc
Q 009715 478 VLTVCREGHIKIWMRPGVA 496 (528)
Q Consensus 478 l~t~s~Dg~i~iW~~~~~~ 496 (528)
|+.++.||.|-|+.+.+..
T Consensus 312 ~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 312 MAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred hhhheeccceeeeeeecCC
Confidence 7888899999999987654
No 154
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=4.1e-18 Score=168.47 Aligned_cols=272 Identities=15% Similarity=0.199 Sum_probs=202.2
Q ss_pred CCCCCeEEEEecCCcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCC
Q 009715 165 AKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDG 244 (528)
Q Consensus 165 ~~~~~~l~~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~ 244 (528)
+...+.|+++-.+|.|.+|+++.. .....+ .+. .....|..++|++.+ .|++.+.+|.|.-||+.+
T Consensus 34 s~kS~~lAvsRt~g~IEiwN~~~~---w~~~~v--i~g-----~~drsIE~L~W~e~~--RLFS~g~sg~i~EwDl~~-- 99 (691)
T KOG2048|consen 34 SHKSNQLAVSRTDGNIEIWNLSNN---WFLEPV--IHG-----PEDRSIESLAWAEGG--RLFSSGLSGSITEWDLHT-- 99 (691)
T ss_pred eccCCceeeeccCCcEEEEccCCC---ceeeEE--Eec-----CCCCceeeEEEccCC--eEEeecCCceEEEEeccc--
Confidence 456677999999999999999861 111111 111 145689999999666 599999999999999976
Q ss_pred CCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCCCCEEEEEeCCCcEEEEecCCceEEee--ecccCC
Q 009715 245 AGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICG--GKSYYG 322 (528)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~~~dg~i~vwd~~~~~~~~~--~~~~~~ 322 (528)
.++....+...+.|.+++.+|.+..++.|++||.+..++...++.... +....+
T Consensus 100 ------------------------lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~s 155 (691)
T KOG2048|consen 100 ------------------------LKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKS 155 (691)
T ss_pred ------------------------CceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccc
Confidence 345556666679999999999999999999999888888887765532 333568
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEee--------cCCCCeEEEEEecCCCCCCCCCCccceeEEEEEE
Q 009715 323 ALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGE--------GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSV 394 (528)
Q Consensus 323 ~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~~~~~~~--------~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~ 394 (528)
.|.+++|+|++..++.|+.||.|++||..++..+.... +-.--|.+|.|-. |+ .|++|
T Consensus 156 RvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lr-------d~-------tI~sg 221 (691)
T KOG2048|consen 156 RVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLR-------DS-------TIASG 221 (691)
T ss_pred eEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEee-------cC-------cEEEe
Confidence 99999999999999999999999999999987666221 1223578888877 77 89999
Q ss_pred eCCCeEEEEEccCCeEEEEeecC-CCCCCCeecCCCCCccCCceeeeecCCCCceeeecCCC-C---ceEEeecCCCCeE
Q 009715 395 GQDTRLLLWDLEMDEIVVPLRRG-PLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKL-S---PLVAHRVHTEPLS 469 (528)
Q Consensus 395 s~D~~i~lwd~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~d~~~~~g~~~~~~~~~d~~~~-~---~~~~~~~h~~~V~ 469 (528)
..-|+|.+||...+..++.+... ..+.+++.+.+. ..+..+..++.+..+..... . .......|...|.
T Consensus 222 DS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~------d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvr 295 (691)
T KOG2048|consen 222 DSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNE------DRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVR 295 (691)
T ss_pred cCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCC------CeEEEccCCCceEEEEecCCccceeeeccccCCcccce
Confidence 99999999999999988877653 334445554443 23333344444444433222 1 1223346888999
Q ss_pred EEEEeCCeEEEEECCCeEEEEeCCC
Q 009715 470 GLIFTQESVLTVCREGHIKIWMRPG 494 (528)
Q Consensus 470 ~l~~s~d~l~t~s~Dg~i~iW~~~~ 494 (528)
+++..++.|++|+.|.++.+-....
T Consensus 296 s~av~~~~l~sgG~d~~l~i~~s~~ 320 (691)
T KOG2048|consen 296 SMAVIENALISGGRDFTLAICSSRE 320 (691)
T ss_pred eeeeecceEEecceeeEEEEccccc
Confidence 9999999999999999998876544
No 155
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.84 E-value=1.1e-18 Score=172.79 Aligned_cols=353 Identities=12% Similarity=0.153 Sum_probs=240.3
Q ss_pred CCCCCCCccccCCcccCCcccCCCCCCcceeeeCCCccEEEEeCCCc--EEEEeCCCCCCC-----------CCCCCeEE
Q 009715 106 GGGNGGSKSISGSSRIGSLGASSSSTSMTNTNFDGKGTYIIFNVGDA--IFISDLNSQDKD-----------AKDGHDLL 172 (528)
Q Consensus 106 ~gh~~~v~~v~~s~~~~~~~~s~s~~s~~~~~~~~~g~~~~~~~~~~--i~v~~~~~~~~~-----------~~~~~~l~ 172 (528)
.||.+-|.++...| .+..+.|+|. |..+++|..+.+ +.+-.++-+... +++++.++
T Consensus 264 ~GHeDWV~sv~W~p-~~~~LLSASa----------DksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii 332 (764)
T KOG1063|consen 264 MGHEDWVYSVWWHP-EGLDLLSASA----------DKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVII 332 (764)
T ss_pred cCcccceEEEEEcc-chhhheeccc----------CcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEE
Confidence 39999999999999 4433444443 788888877765 555555543322 78889999
Q ss_pred EEecCCcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCC----------
Q 009715 173 IGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSK---------- 242 (528)
Q Consensus 173 ~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~---------- 242 (528)
+-+..|-.++|--... .. -....-..+|...|++++|+|.|+ +|++.+.|.+-|+|-.-.
T Consensus 333 ~~g~~Gg~hlWkt~d~-----~~----w~~~~~iSGH~~~V~dv~W~psGe-flLsvs~DQTTRlFa~wg~q~~wHEiaR 402 (764)
T KOG1063|consen 333 AHGRTGGFHLWKTKDK-----TF----WTQEPVISGHVDGVKDVDWDPSGE-FLLSVSLDQTTRLFARWGRQQEWHEIAR 402 (764)
T ss_pred EecccCcEEEEeccCc-----cc----eeeccccccccccceeeeecCCCC-EEEEeccccceeeecccccccceeeecc
Confidence 9999999999972110 00 011122335888999999999999 888999898888875430
Q ss_pred C---CCCCCccccccccceeEEe-----------------------------------------c----------cCC--
Q 009715 243 D---GAGDSSFPVIKDQTQFSVA-----------------------------------------H----------PRY-- 266 (528)
Q Consensus 243 ~---~~~~~~~~~~~~~~~~~~~-----------------------------------------~----------~~~-- 266 (528)
+ |-....+.......+|.-+ + ...
T Consensus 403 PQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G 482 (764)
T KOG1063|consen 403 PQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTG 482 (764)
T ss_pred cccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccc
Confidence 0 0000000000000000000 0 000
Q ss_pred ------------------------------CCCCCeEEEeecCCCeEEEEECCCCCEEEEEeCC-----CcEEEEecCCc
Q 009715 267 ------------------------------SKSNPIARWHICQGSINSIAFSTDGTYLATVGRD-----GYLRVFDYSKE 311 (528)
Q Consensus 267 ------------------------------~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~~~d-----g~i~vwd~~~~ 311 (528)
.-...++.+.+|.-.|++++.+|+++++|+++.. -.|++|+..+-
T Consensus 483 ~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W 562 (764)
T KOG1063|consen 483 GEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANW 562 (764)
T ss_pred cccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccch
Confidence 0011122345688999999999999999998754 35899999988
Q ss_pred eEEeeecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe----EEEEeecCCCCeEEEEEecCCCCCCCCCCccce
Q 009715 312 QLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRK----VVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETV 387 (528)
Q Consensus 312 ~~~~~~~~~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~----~~~~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~ 387 (528)
..++.+..|.-.|+.++||||+++|++.+.|.++.+|...... .....+.|..-|.+..|+| |+
T Consensus 563 ~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~p-------de----- 630 (764)
T KOG1063|consen 563 LQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSP-------DE----- 630 (764)
T ss_pred hhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCc-------cc-----
Confidence 8888899999999999999999999999999999999875432 2334678999999999999 88
Q ss_pred eEEEEEEeCCCeEEEEEccCC--eEEEEe---ecCCCCCCCeecCCCCCccCCceeeeecCCCCceeeecCCC-------
Q 009715 388 MYRFGSVGQDTRLLLWDLEMD--EIVVPL---RRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKL------- 455 (528)
Q Consensus 388 ~~~l~s~s~D~~i~lwd~~~~--~~~~~~---~~~~~~~~~~~s~~~~~~~~d~~~~~g~~~~~~~~~d~~~~------- 455 (528)
..|+|++.|.+|++|..... +.+..+ .....++.+.+.+-- ...-...+.+|-..+.+.+|.....
T Consensus 631 -~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~-~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~ 708 (764)
T KOG1063|consen 631 -KYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVD-HNEKGDVVAVGLEKGEIVLWRRKREHRQVTVG 708 (764)
T ss_pred -ceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccc-cccccceEEEEecccEEEEEecccccccccce
Confidence 67999999999999998776 443332 222333333332211 1111235688888899999885511
Q ss_pred -----CceEEeecCCCCeEEEEEeCC------------eEEEEECCCeEEEEeCC
Q 009715 456 -----SPLVAHRVHTEPLSGLIFTQE------------SVLTVCREGHIKIWMRP 493 (528)
Q Consensus 456 -----~~~~~~~~h~~~V~~l~~s~d------------~l~t~s~Dg~i~iW~~~ 493 (528)
..+....+|...|+.+.|.|- .|+.|+.|..+||+++.
T Consensus 709 ~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 709 TFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGDDESVRIFNVD 763 (764)
T ss_pred eeeeccccccccChHHhhheeEeccccccccccccceeEEeeecccceeEEeecc
Confidence 122234467889999999972 17999999999999874
No 156
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=2.6e-19 Score=163.66 Aligned_cols=289 Identities=14% Similarity=0.188 Sum_probs=199.9
Q ss_pred CeEEEEecCCcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeC-CCcEEEEEeCCceEEEEEcCCCCCCC
Q 009715 169 HDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPG-GDGAFVVGHADGNLYVYEKSKDGAGD 247 (528)
Q Consensus 169 ~~l~~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~-g~~~l~tg~~dg~v~vwd~~~~~~~~ 247 (528)
..++++.++|.|++||..+ ..+..++..+...++.++|... +.+.+.+|+.||+|++||++..+.
T Consensus 41 ~~vav~lSngsv~lyd~~t------------g~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e-- 106 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGT------------GQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAE-- 106 (376)
T ss_pred eeEEEEecCCeEEEEeccc------------hhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchh--
Confidence 6799999999999999876 3344455568888999999874 556899999999999999987332
Q ss_pred CccccccccceeEEeccCCCCCCCeEEEeecC-CCeEEEEECCCCCEEEEEe----CCCcEEEEecCCceE-Eee-eccc
Q 009715 248 SSFPVIKDQTQFSVAHPRYSKSNPIARWHICQ-GSINSIAFSTDGTYLATVG----RDGYLRVFDYSKEQL-ICG-GKSY 320 (528)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~spdg~~l~s~~----~dg~i~vwd~~~~~~-~~~-~~~~ 320 (528)
.+...|..|. .+..|++....++.+++|. .|-.|.+||++..+. +.. ...|
T Consensus 107 ----------------------~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH 164 (376)
T KOG1188|consen 107 ----------------------SARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESH 164 (376)
T ss_pred ----------------------hhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhc
Confidence 2333344444 5667787777788888875 466899999997765 433 4569
Q ss_pred CCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCe----EEEEeecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEe
Q 009715 321 YGALLCCAWSM-DGKYILTGGEDDLVQVWSMEDRK----VVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVG 395 (528)
Q Consensus 321 ~~~v~~l~~sp-~g~~l~sg~~dg~v~vwd~~~~~----~~~~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s 395 (528)
.+.|++|.|+| +.++|++|+.||.|.|||++... ++.++ .|...|..+.|.. ++ +.+|.+-+
T Consensus 165 ~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~vi-N~~sSI~~igw~~-------~~-----ykrI~clT 231 (376)
T KOG1188|consen 165 NDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVI-NHGSSIHLIGWLS-------KK-----YKRIMCLT 231 (376)
T ss_pred cCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhh-cccceeeeeeeec-------CC-----cceEEEEE
Confidence 99999999999 56799999999999999997642 23334 3888899999987 55 14688889
Q ss_pred CCCeEEEEEccCCeEEEEeecCCCCC-------CCeecCCCCCcc-CCceeeeecCCCCceeeec------CCCCceEEe
Q 009715 396 QDTRLLLWDLEMDEIVVPLRRGPLGG-------SPTFSTGSQSAH-WDNVCPVGTLQPAPSMRDV------PKLSPLVAH 461 (528)
Q Consensus 396 ~D~~i~lwd~~~~~~~~~~~~~~~~~-------~~~~s~~~~~~~-~d~~~~~g~~~~~~~~~d~------~~~~~~~~~ 461 (528)
.+.+..+|++..+.+...+....... ...+.-+.-... -+.....|+..+...++-+ ...+++..+
T Consensus 232 H~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l 311 (376)
T KOG1188|consen 232 HMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAIL 311 (376)
T ss_pred ccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccc
Confidence 99999999999888665554421100 011111111111 1111223332333333322 234566667
Q ss_pred ec-CCCCeEEEEEeC--CeEEEEECCCeEEEEeCCCCccccCCCccce
Q 009715 462 RV-HTEPLSGLIFTQ--ESVLTVCREGHIKIWMRPGVAESQSSSSETV 506 (528)
Q Consensus 462 ~~-h~~~V~~l~~s~--d~l~t~s~Dg~i~iW~~~~~~~~~~~~~~~v 506 (528)
++ |.+-|+++.|.. +.+.|||.||.|++|..+...+..+.-.+..
T Consensus 312 ~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~da~e~~~s~~esl 359 (376)
T KOG1188|consen 312 QGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVEDATEINFSWTESL 359 (376)
T ss_pred cCCcHHHHHHHhhhcccceeeccCCCceEEEEecCCcccccccccccc
Confidence 66 777888888876 3599999999999999866555444443333
No 157
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.83 E-value=3.5e-19 Score=166.20 Aligned_cols=172 Identities=18% Similarity=0.319 Sum_probs=141.1
Q ss_pred cCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEEC
Q 009715 209 NNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFS 288 (528)
Q Consensus 209 h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 288 (528)
...+|..+.|.++..+.|++|+.|..|++|.+......... .+...+..+..|+.+|+++.|+
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~-----------------~~V~y~s~Ls~H~~aVN~vRf~ 74 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGD-----------------MKVEYLSSLSRHTRAVNVVRFS 74 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCc-----------------eeEEEeecccCCcceeEEEEEc
Confidence 34589999999998889999999999999999763321100 1123445667799999999999
Q ss_pred CCCCEEEEEeCCCcEEEEecC--------C--------ceEEeeecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 009715 289 TDGTYLATVGRDGYLRVFDYS--------K--------EQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMED 352 (528)
Q Consensus 289 pdg~~l~s~~~dg~i~vwd~~--------~--------~~~~~~~~~~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~ 352 (528)
|+|..||+|+.+|.|.+|-.. + ......+.+|...|..++|+|++.++++++.|+.+++||+..
T Consensus 75 p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~ 154 (434)
T KOG1009|consen 75 PDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHA 154 (434)
T ss_pred CCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEecc
Confidence 999999999999999999765 2 122345677999999999999999999999999999999999
Q ss_pred CeEEEEeecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeE
Q 009715 353 RKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEI 410 (528)
Q Consensus 353 ~~~~~~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~ 410 (528)
|..+..+.+|...|..++|+| -+ .++++-+.|...+.+.+...+.
T Consensus 155 G~l~~~~~dh~~yvqgvawDp-------l~------qyv~s~s~dr~~~~~~~~~~~~ 199 (434)
T KOG1009|consen 155 GQLLAILDDHEHYVQGVAWDP-------LN------QYVASKSSDRHPEGFSAKLKQV 199 (434)
T ss_pred ceeEeeccccccccceeecch-------hh------hhhhhhccCcccceeeeeeeee
Confidence 999999999999999999999 55 5777777777666666654443
No 158
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.83 E-value=5.4e-19 Score=160.29 Aligned_cols=202 Identities=18% Similarity=0.280 Sum_probs=154.6
Q ss_pred CCCCCeEEEEecCCcEEEEEccccccccccceeeeeeeccCCcccCCc---eeEEEEeeCCCcEEEEEeCCceEEEEEcC
Q 009715 165 AKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSR---CTSVTWVPGGDGAFVVGHADGNLYVYEKS 241 (528)
Q Consensus 165 ~~~~~~l~~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~---v~~l~~~p~g~~~l~tg~~dg~v~vwd~~ 241 (528)
.|+.+++++...+.-|++||.-+. +.......+. |... ..+++|+|||. .|++|. ...|++||+.
T Consensus 120 qP~t~l~a~ssr~~PIh~wdaftG-----~lraSy~~yd-----h~de~taAhsL~Fs~DGe-qlfaGy-krcirvFdt~ 187 (406)
T KOG2919|consen 120 QPSTNLFAVSSRDQPIHLWDAFTG-----KLRASYRAYD-----HQDEYTAAHSLQFSPDGE-QLFAGY-KRCIRVFDTS 187 (406)
T ss_pred CCccceeeeccccCceeeeecccc-----ccccchhhhh-----hHHhhhhheeEEecCCCC-eEeecc-cceEEEeecc
Confidence 778889999999999999998762 1111111111 4443 45899999999 676665 5799999997
Q ss_pred CCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECC-CCCEEEEEeCCCcEEEEecCCceEEeeeccc
Q 009715 242 KDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST-DGTYLATVGRDGYLRVFDYSKEQLICGGKSY 320 (528)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp-dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 320 (528)
..+.....++...... .+..+-|.|++|+| +...+++++....+-|+.-..+.++..+.+|
T Consensus 188 RpGr~c~vy~t~~~~k------------------~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh 249 (406)
T KOG2919|consen 188 RPGRDCPVYTTVTKGK------------------FGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGH 249 (406)
T ss_pred CCCCCCcchhhhhccc------------------ccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeeccc
Confidence 6665544444332210 11247789999999 6779999999889999998888999999999
Q ss_pred CCCeEEEEEcCCCCEEEEEeC-CCcEEEEECCC-CeEEEEeecCCC-CeEEEEEecCCCCCCCCCCccceeEEEEEEeCC
Q 009715 321 YGALLCCAWSMDGKYILTGGE-DDLVQVWSMED-RKVVAWGEGHNS-WVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQD 397 (528)
Q Consensus 321 ~~~v~~l~~sp~g~~l~sg~~-dg~v~vwd~~~-~~~~~~~~~h~~-~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D 397 (528)
.+.|+.+.|.++|+.|++|.. |..|..||++. +.++..+..|.. .-.-|.|+- .++| .+|++|+.|
T Consensus 250 ~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDl-----d~~~------~~LasG~td 318 (406)
T KOG2919|consen 250 GGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDL-----DPKG------EILASGDTD 318 (406)
T ss_pred CCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEec-----CCCC------ceeeccCCC
Confidence 999999999999999999876 77999999987 567788888876 444566643 1166 699999999
Q ss_pred CeEEEEEccC
Q 009715 398 TRLLLWDLEM 407 (528)
Q Consensus 398 ~~i~lwd~~~ 407 (528)
|.|++||++.
T Consensus 319 G~V~vwdlk~ 328 (406)
T KOG2919|consen 319 GSVRVWDLKD 328 (406)
T ss_pred ccEEEEecCC
Confidence 9999999986
No 159
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.82 E-value=1.1e-18 Score=158.75 Aligned_cols=243 Identities=16% Similarity=0.280 Sum_probs=182.0
Q ss_pred cCCceeEEEEeeCCC---cEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEE
Q 009715 209 NNSRCTSVTWVPGGD---GAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSI 285 (528)
Q Consensus 209 h~~~v~~l~~~p~g~---~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 285 (528)
|......++|+-+.. =++|+|+.-|.|+|.|+.+ ......+.+|.++|+.|
T Consensus 88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~--------------------------~~~~~~~~ghG~sINei 141 (385)
T KOG1034|consen 88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVS--------------------------GQCSKNYRGHGGSINEI 141 (385)
T ss_pred CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecch--------------------------hhhccceeccCccchhh
Confidence 666777888875432 2888899999999999976 34566788899999999
Q ss_pred EECC-CCCEEEEEeCCCcEEEEecCCceEEeee---cccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE------
Q 009715 286 AFST-DGTYLATVGRDGYLRVFDYSKEQLICGG---KSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKV------ 355 (528)
Q Consensus 286 ~~sp-dg~~l~s~~~dg~i~vwd~~~~~~~~~~---~~~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~~------ 355 (528)
.|.| +.+++++++.|..||+|++++..++..+ .+|.+.|+++.|+++|.+|++++.|..|++|++...+.
T Consensus 142 k~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~ 221 (385)
T KOG1034|consen 142 KFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLEL 221 (385)
T ss_pred hcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhh
Confidence 9999 5689999999999999999999998765 56999999999999999999999999999999973210
Q ss_pred -------------------EE---EeecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEc-cCCeEEE
Q 009715 356 -------------------VA---WGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDL-EMDEIVV 412 (528)
Q Consensus 356 -------------------~~---~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~-~~~~~~~ 412 (528)
.. +-.-|...|-|+.|-- .++++-+-++.|..|.. ..++.+.
T Consensus 222 s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~g---------------d~ilSkscenaI~~w~pgkl~e~~~ 286 (385)
T KOG1034|consen 222 SITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFG---------------DFILSKSCENAIVCWKPGKLEESIH 286 (385)
T ss_pred hcccCCCCccCcCCccccccccccccccccchHHHHHHHh---------------hheeecccCceEEEEecchhhhhhh
Confidence 00 1124778888888843 58999999999999987 3333333
Q ss_pred EeecCCCCC-----------CCeecCCCCCccCCceeeeecCCCCceeeecCCCCceE----EeecCCCCeEEEEEeCCe
Q 009715 413 PLRRGPLGG-----------SPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLV----AHRVHTEPLSGLIFTQES 477 (528)
Q Consensus 413 ~~~~~~~~~-----------~~~~s~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~----~~~~h~~~V~~l~~s~d~ 477 (528)
.+....... .+.|..- ....|...++.|...+.+.+||+...+|.. ........|...+|+.|+
T Consensus 287 ~vkp~es~~Ti~~~~~~~~c~iWfirf-~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dg 365 (385)
T KOG1034|consen 287 NVKPPESATTILGEFDYPMCDIWFIRF-AFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDG 365 (385)
T ss_pred ccCCCccceeeeeEeccCccceEEEEE-eecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccC
Confidence 222111111 1111000 123456677899999999999998877631 122234578999999986
Q ss_pred --EEEEECCCeEEEEeCC
Q 009715 478 --VLTVCREGHIKIWMRP 493 (528)
Q Consensus 478 --l~t~s~Dg~i~iW~~~ 493 (528)
|+..+.|++|.-||.-
T Consensus 366 s~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 366 SILVLVCDDGTVWRWDRV 383 (385)
T ss_pred cEEEEEeCCCcEEEEEee
Confidence 8889999999999964
No 160
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.81 E-value=5e-18 Score=154.07 Aligned_cols=268 Identities=21% Similarity=0.303 Sum_probs=186.7
Q ss_pred CCCCCeEEEEecCCcEEEEEcccccccccc------ceeeeeeeccCCcccCCceeEEEEe-------eCCCcEEEEEeC
Q 009715 165 AKDGHDLLIGLNSGDVYSVSLRQQLQDVGK------KLVGAHHYNKDGSVNNSRCTSVTWV-------PGGDGAFVVGHA 231 (528)
Q Consensus 165 ~~~~~~l~~g~~~G~v~iwd~~~~~~~~~~------~~~~~~~~~~~~~~h~~~v~~l~~~-------p~g~~~l~tg~~ 231 (528)
+|||.-|++-+.|..+.+|++...+-.... +.....++ .....|...+|- |+.. ++++.+.
T Consensus 58 SPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~-----~eg~tvydy~wYs~M~s~qP~t~-l~a~ssr 131 (406)
T KOG2919|consen 58 SPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRY-----QEGETVYDYCWYSRMKSDQPSTN-LFAVSSR 131 (406)
T ss_pred CCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEe-----ccCCEEEEEEeeeccccCCCccc-eeeeccc
Confidence 789999999999999999998763222110 01111222 145578888886 4555 8999999
Q ss_pred CceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCCCCEEEEEeCCCcEEEEec-CC
Q 009715 232 DGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDY-SK 310 (528)
Q Consensus 232 dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~~~dg~i~vwd~-~~ 310 (528)
|.-|++||.-+ +.....+........+ .+..+++|+|||.+|+.|. ...|++||+ +.
T Consensus 132 ~~PIh~wdaft-G~lraSy~~ydh~de~--------------------taAhsL~Fs~DGeqlfaGy-krcirvFdt~Rp 189 (406)
T KOG2919|consen 132 DQPIHLWDAFT-GKLRASYRAYDHQDEY--------------------TAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRP 189 (406)
T ss_pred cCceeeeeccc-cccccchhhhhhHHhh--------------------hhheeEEecCCCCeEeecc-cceEEEeeccCC
Confidence 99999999876 4433333322221111 3456899999999999885 478999999 44
Q ss_pred ceEE--ee-----ecccCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCeEEEEEecCCCCCCCCC
Q 009715 311 EQLI--CG-----GKSYYGALLCCAWSM-DGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDG 382 (528)
Q Consensus 311 ~~~~--~~-----~~~~~~~v~~l~~sp-~g~~l~sg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~v~f~p~~~~~~~dg 382 (528)
|... .. -.+..+-+.|++|+| +.+.++.|+....+-||.-..++++..+.+|.+.|+.++|++ ||
T Consensus 190 Gr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~e-------dG 262 (406)
T KOG2919|consen 190 GRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCE-------DG 262 (406)
T ss_pred CCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEecc-------Cc
Confidence 4321 11 122357789999999 556899999999999999999999999999999999999999 99
Q ss_pred CccceeEEEEEEe-CCCeEEEEEccCCeEEEEeecCCCCCCCeecCCCCCccCCceeeeecCCCCceeeecCCCCceEEe
Q 009715 383 TAETVMYRFGSVG-QDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAH 461 (528)
Q Consensus 383 ~~~~~~~~l~s~s-~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~ 461 (528)
+.|++|. .|-.|..||++..+. ++..+
T Consensus 263 ------n~lfsGaRk~dkIl~WDiR~~~~----------------------------------------------pv~~L 290 (406)
T KOG2919|consen 263 ------NKLFSGARKDDKILCWDIRYSRD----------------------------------------------PVYAL 290 (406)
T ss_pred ------CeecccccCCCeEEEEeehhccc----------------------------------------------hhhhh
Confidence 5777776 688999999986432 22223
Q ss_pred ecCCC-CeEEEEEeC--C--eEEEEECCCeEEEEeCCCCcc---ccCCCccce--EEEccCCceEEEe
Q 009715 462 RVHTE-PLSGLIFTQ--E--SVLTVCREGHIKIWMRPGVAE---SQSSSSETV--LSTSSKDKPLLSS 519 (528)
Q Consensus 462 ~~h~~-~V~~l~~s~--d--~l~t~s~Dg~i~iW~~~~~~~---~~~~~~~~v--l~~spd~~~l~s~ 519 (528)
..|.+ .-..|.|.- + .|++|+.||.|++||+..-.. ....+...+ +++.|--..++++
T Consensus 291 ~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilats 358 (406)
T KOG2919|consen 291 ERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATS 358 (406)
T ss_pred hhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeec
Confidence 33433 334455654 3 489999999999999987322 222455666 6777776666654
No 161
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.81 E-value=5.8e-18 Score=157.41 Aligned_cols=167 Identities=17% Similarity=0.293 Sum_probs=143.4
Q ss_pred cccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEE
Q 009715 207 SVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIA 286 (528)
Q Consensus 207 ~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 286 (528)
.+|.++|.+++|+|.+++.||+|+.|.+|.||++..++... .-.+++..+.+|+..|--++
T Consensus 78 ~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~-------------------~ltepvv~L~gH~rrVg~V~ 138 (472)
T KOG0303|consen 78 CGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTR-------------------DLTEPVVELYGHQRRVGLVQ 138 (472)
T ss_pred cCccccccccccCccCCceeecCCCCceEEEEECCCccccc-------------------CcccceEEEeecceeEEEEe
Confidence 35999999999999999899999999999999998644321 12368999999999999999
Q ss_pred ECC-CCCEEEEEeCCCcEEEEecCCceEEeeecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCC
Q 009715 287 FST-DGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSW 365 (528)
Q Consensus 287 ~sp-dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~~~~~~~~h~~~ 365 (528)
|+| -.+.|++++.|..|.+||+.+++.+..+. |.+.|.++.|+-||.+|++.+.|..|+|||.++++.+....+|.+.
T Consensus 139 wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~ 217 (472)
T KOG0303|consen 139 WHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGA 217 (472)
T ss_pred ecccchhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCC
Confidence 999 56789999999999999999999988887 9999999999999999999999999999999999999888888763
Q ss_pred -eEEEEEecCCCCCCCCCCccceeEEEEEEe----CCCeEEEEEccC
Q 009715 366 -VSGVAFDSYWSQPNSDGTAETVMYRFGSVG----QDTRLLLWDLEM 407 (528)
Q Consensus 366 -V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s----~D~~i~lwd~~~ 407 (528)
-.-+.|-. +| . +++.+ .+.++-|||...
T Consensus 218 k~~Raifl~-------~g------~-i~tTGfsr~seRq~aLwdp~n 250 (472)
T KOG0303|consen 218 KPARAIFLA-------SG------K-IFTTGFSRMSERQIALWDPNN 250 (472)
T ss_pred CcceeEEec-------cC------c-eeeeccccccccceeccCccc
Confidence 44566766 77 4 55544 577899998654
No 162
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.80 E-value=1e-18 Score=171.41 Aligned_cols=239 Identities=18% Similarity=0.257 Sum_probs=170.2
Q ss_pred EEEe--eCCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCCCCE
Q 009715 216 VTWV--PGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTY 293 (528)
Q Consensus 216 l~~~--p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spdg~~ 293 (528)
..|+ |+.+++|+.+.+||.|.++|...... . .+...++.|..|.+.|..+.|-|-...
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~f-----r---------------~ee~~lk~~~aH~nAifDl~wapge~~ 114 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVF-----R---------------LEERQLKKPLAHKNAIFDLKWAPGESL 114 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhhc-----c---------------hhhhhhcccccccceeEeeccCCCcee
Confidence 5554 45567999999999999999875211 0 123456778899999999999997678
Q ss_pred EEEEeCCCcEEEEecCCceEEee--ecccCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCe----------------
Q 009715 294 LATVGRDGYLRVFDYSKEQLICG--GKSYYGALLCCAWSMDG-KYILTGGEDDLVQVWSMEDRK---------------- 354 (528)
Q Consensus 294 l~s~~~dg~i~vwd~~~~~~~~~--~~~~~~~v~~l~~sp~g-~~l~sg~~dg~v~vwd~~~~~---------------- 354 (528)
|++++.|.++++||+++.+++.. +.+|.+.|.+++|.|+. ..|++|+.||.|.|||++...
T Consensus 115 lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n 194 (720)
T KOG0321|consen 115 LVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHN 194 (720)
T ss_pred EEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhcccc
Confidence 99999999999999999988876 88999999999999955 478899999999999986321
Q ss_pred -----------EEEEeecCCCC----eEEEEEecCCCCCCCCCCccceeEEEEEEeC-CCeEEEEEccCCeEEEEeecCC
Q 009715 355 -----------VVAWGEGHNSW----VSGVAFDSYWSQPNSDGTAETVMYRFGSVGQ-DTRLLLWDLEMDEIVVPLRRGP 418 (528)
Q Consensus 355 -----------~~~~~~~h~~~----V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~-D~~i~lwd~~~~~~~~~~~~~~ 418 (528)
.+.....|... |+.+.|- |. ..|++++. |+.|+|||++............
T Consensus 195 ~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fk--------De------~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~ 260 (720)
T KOG0321|consen 195 TAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFK--------DE------STLASAGAADSTIKVWDLRKNYTAYRQEPRG 260 (720)
T ss_pred CCCCCCchhhccccccccccCceeeeeEEEEEe--------cc------ceeeeccCCCcceEEEeecccccccccCCCc
Confidence 11112234443 4455554 55 58999887 9999999999876654332100
Q ss_pred CCCCCeecCCCCCccCCceeeeecCCCCceeeecCCCCceEEeecC---CCCeEEEEEeC--CeEEEEECCCeEEEEeCC
Q 009715 419 LGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVH---TEPLSGLIFTQ--ESVLTVCREGHIKIWMRP 493 (528)
Q Consensus 419 ~~~~~~~s~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h---~~~V~~l~~s~--d~l~t~s~Dg~i~iW~~~ 493 (528)
. ..+.-| .-.+.++.... .+|+..|.|+.|++|++.
T Consensus 261 ---~------------------------------------~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~ 301 (720)
T KOG0321|consen 261 ---S------------------------------------DKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMR 301 (720)
T ss_pred ---c------------------------------------cCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEecc
Confidence 0 000011 22456666665 357777779999999998
Q ss_pred CCccccC-CCcc------ce-EEEccCCceEEEeeeeccccc
Q 009715 494 GVAESQS-SSSE------TV-LSTSSKDKPLLSSKVVTSSYR 527 (528)
Q Consensus 494 ~~~~~~~-~~~~------~v-l~~spd~~~l~s~~~~gs~~~ 527 (528)
+...... .+.+ .+ -.++||+++|++|+.+...|-
T Consensus 302 s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayi 343 (720)
T KOG0321|consen 302 SLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYI 343 (720)
T ss_pred ccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceee
Confidence 7653322 1221 11 345999999999998876654
No 163
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.80 E-value=1.7e-18 Score=165.06 Aligned_cols=264 Identities=12% Similarity=0.148 Sum_probs=189.0
Q ss_pred EEEEecCCcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCcc
Q 009715 171 LLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSF 250 (528)
Q Consensus 171 l~~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~ 250 (528)
|.+++...++++||+.... ....|.... ....+..+.|.....-.+++.+.|..|++|...... ...
T Consensus 5 l~~aS~gd~~kl~D~s~~~--------~~~~~~~~t--~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~---~~V 71 (673)
T KOG4378|consen 5 LHVASTGDKTKLSDFSDLE--------TKSEYVHQT--AEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKT---PEV 71 (673)
T ss_pred eeeeccCCceEEeeccccc--------CccccccCC--CCCcceeeeccccceEEEeecCCceeEEEecccCCC---Ccc
Confidence 4455555689999987621 111122211 122388999988764233344577889999866421 111
Q ss_pred ccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCCCCEEEEEeCCCcEEEEecCCceEEeeecccCCCeEEEEEc
Q 009715 251 PVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWS 330 (528)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s 330 (528)
+... ...+ ..-.|++......++++|+..+.|+|||++...+.+.++.|...|+++.++
T Consensus 72 p~~~-------------------k~~g--d~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN 130 (673)
T KOG4378|consen 72 PRVR-------------------KLTG--DNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYN 130 (673)
T ss_pred ceee-------------------cccc--chHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEec
Confidence 1111 0001 122233333345799999999999999999777778889999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCeEEEEeecC-CCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCe
Q 009715 331 MDGKYILTGGEDDLVQVWSMEDRKVVAWGEGH-NSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDE 409 (528)
Q Consensus 331 p~g~~l~sg~~dg~v~vwd~~~~~~~~~~~~h-~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~ 409 (528)
-...|||+++..|.|.|..+.++.....|... ...|.-+.|+| .-+ .+|.+++.+|.|.+||+....
T Consensus 131 ~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~-------skr-----~lL~~asd~G~VtlwDv~g~s 198 (673)
T KOG4378|consen 131 NTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSP-------SKR-----FLLSIASDKGAVTLWDVQGMS 198 (673)
T ss_pred CCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeeccc-------ccc-----eeeEeeccCCeEEEEeccCCC
Confidence 98999999999999999999998776666633 34566899998 321 688999999999999987655
Q ss_pred EEEEeecCCCCCCCeecCCCCCccCCceeeeecCCCCceeeecCCCCceEEeecCCCCeEEEEEeCC---eEEEEECCCe
Q 009715 410 IVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE---SVLTVCREGH 486 (528)
Q Consensus 410 ~~~~~~~~~~~~~~~~s~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~~s~d---~l~t~s~Dg~ 486 (528)
++..+ ...|.++...|+|+|. .|++.+.|..
T Consensus 199 p~~~~----------------------------------------------~~~HsAP~~gicfspsne~l~vsVG~Dkk 232 (673)
T KOG4378|consen 199 PIFHA----------------------------------------------SEAHSAPCRGICFSPSNEALLVSVGYDKK 232 (673)
T ss_pred cccch----------------------------------------------hhhccCCcCcceecCCccceEEEecccce
Confidence 44322 2369999999999995 3999999999
Q ss_pred EEEEeCCCCcccc---CCCccceEEEccCCceEEEeeeecccc
Q 009715 487 IKIWMRPGVAESQ---SSSSETVLSTSSKDKPLLSSKVVTSSY 526 (528)
Q Consensus 487 i~iW~~~~~~~~~---~~~~~~vl~~spd~~~l~s~~~~gs~~ 526 (528)
|.+||...+.... ..|.-..++|+++|-+|+.|+..|-++
T Consensus 233 i~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i 275 (673)
T KOG4378|consen 233 INIYDIRSQASTDRLTYSHPLSTVAFSECGTYLCAGNSKGELI 275 (673)
T ss_pred EEEeecccccccceeeecCCcceeeecCCceEEEeecCCceEE
Confidence 9999998765332 245455599999999999999888765
No 164
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.79 E-value=1.2e-17 Score=151.91 Aligned_cols=284 Identities=23% Similarity=0.258 Sum_probs=194.0
Q ss_pred cCCceeEEEEee----CCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEE
Q 009715 209 NNSRCTSVTWVP----GGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINS 284 (528)
Q Consensus 209 h~~~v~~l~~~p----~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 284 (528)
|+.+|..++|++ +....+++.+. ..+.+|+...++ ....++...+. .|......
T Consensus 37 ~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~-~ir~lq~y~D~--------------------d~~Esfyt 94 (385)
T KOG1034|consen 37 HNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDG-GIRLLQSYADE--------------------DHDESFYT 94 (385)
T ss_pred CCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCcc-ceeeeeeccCC--------------------CCCcceEE
Confidence 788999999984 22336777665 488899887543 11112211111 13455666
Q ss_pred EEECCC----CCEEEEEeCCCcEEEEecCCceEEeeecccCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCeEEEEe
Q 009715 285 IAFSTD----GTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDG-KYILTGGEDDLVQVWSMEDRKVVAWG 359 (528)
Q Consensus 285 l~~spd----g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~g-~~l~sg~~dg~v~vwd~~~~~~~~~~ 359 (528)
++|+-| ..++|.++.-|.|+|.|+.++++...+.+|.+.|+.|.++|+. +++++++.|..|++||+++..|+..+
T Consensus 95 csw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~Vf 174 (385)
T KOG1034|consen 95 CSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVF 174 (385)
T ss_pred EEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEe
Confidence 777653 3478889999999999999999999999999999999999964 68899999999999999999999887
Q ss_pred e---cCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEEEeecC----CC----------CCC
Q 009715 360 E---GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRG----PL----------GGS 422 (528)
Q Consensus 360 ~---~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~----~~----------~~~ 422 (528)
- +|.+.|.++.|++ +| .+|++++.|.+|++|++...+.-..++.. +. ..-
T Consensus 175 GG~egHrdeVLSvD~~~-------~g------d~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~f 241 (385)
T KOG1034|consen 175 GGVEGHRDEVLSVDFSL-------DG------DRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHF 241 (385)
T ss_pred cccccccCcEEEEEEcC-------CC------CeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccc
Confidence 4 6999999999999 99 69999999999999999854432222211 00 011
Q ss_pred CeecCCCC------Ccc-CCceeeeecCCCCceeeecCCC--------------CceEEeecCCCCeEEEEEeCC----e
Q 009715 423 PTFSTGSQ------SAH-WDNVCPVGTLQPAPSMRDVPKL--------------SPLVAHRVHTEPLSGLIFTQE----S 477 (528)
Q Consensus 423 ~~~s~~~~------~~~-~d~~~~~g~~~~~~~~~d~~~~--------------~~~~~~~~h~~~V~~l~~s~d----~ 477 (528)
..|+.... ... +...+..-+-++.+..|...+. ..+..+......|+-+.|.-| .
T Consensus 242 p~fst~diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~ 321 (385)
T KOG1034|consen 242 PDFSTTDIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKM 321 (385)
T ss_pred ccccccccccchHHHHHHHhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHH
Confidence 11211100 001 1111223333445555544111 123444445566777777655 4
Q ss_pred EEEEECCCeEEEEeCCCCccc-cC-----CCccce--EEEccCCceEEEeeeeccccc
Q 009715 478 VLTVCREGHIKIWMRPGVAES-QS-----SSSETV--LSTSSKDKPLLSSKVVTSSYR 527 (528)
Q Consensus 478 l~t~s~Dg~i~iW~~~~~~~~-~~-----~~~~~v--l~~spd~~~l~s~~~~gs~~~ 527 (528)
|+.+...|.|.+||+...... .. .....| .+||-|+..|+....++.+++
T Consensus 322 la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwr 379 (385)
T KOG1034|consen 322 LALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWR 379 (385)
T ss_pred HhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEE
Confidence 899999999999999876542 22 122233 889999999999998887764
No 165
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=6e-19 Score=184.14 Aligned_cols=210 Identities=19% Similarity=0.339 Sum_probs=165.1
Q ss_pred cCCceeEEEEeeCCCc---EEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEE
Q 009715 209 NNSRCTSVTWVPGGDG---AFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSI 285 (528)
Q Consensus 209 h~~~v~~l~~~p~g~~---~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 285 (528)
-..+.++++|.+.+.+ +|+.|..||.|.+||...- ........+.....|.+.|..+
T Consensus 63 s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~--------------------~~~~~~~~la~~~~h~G~V~gL 122 (1049)
T KOG0307|consen 63 SSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASI--------------------IANASEEVLATKSKHTGPVLGL 122 (1049)
T ss_pred ccccceeeeecccCCCccceeeccccCCceEEecchhh--------------------ccCcchHHHhhhcccCCceeee
Confidence 4557889999998874 5999999999999998751 0012245566778899999999
Q ss_pred EECC-CCCEEEEEeCCCcEEEEecCCceEEeeec--ccCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCeEEEEeec
Q 009715 286 AFST-DGTYLATVGRDGYLRVFDYSKEQLICGGK--SYYGALLCCAWSMD-GKYILTGGEDDLVQVWSMEDRKVVAWGEG 361 (528)
Q Consensus 286 ~~sp-dg~~l~s~~~dg~i~vwd~~~~~~~~~~~--~~~~~v~~l~~sp~-g~~l~sg~~dg~v~vwd~~~~~~~~~~~~ 361 (528)
+|++ .+++||+|+.||.|.|||+..-+.-.... ...+.|.+++|+.. ...|++++.+|.+.|||++..+++-.+..
T Consensus 123 DfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~ 202 (1049)
T KOG0307|consen 123 DFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSD 202 (1049)
T ss_pred eccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCccccccc
Confidence 9999 56699999999999999998754433331 13568999999874 45788999999999999999988877765
Q ss_pred CCC--CeEEEEEecCCCCCCCCCCccceeEEEEEEeCCC---eEEEEEccCCeEEEEeecCCCCCCCeecCCCCCccCCc
Q 009715 362 HNS--WVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDT---RLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDN 436 (528)
Q Consensus 362 h~~--~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~---~i~lwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~d~ 436 (528)
|.. .+..++|+| |.. ..|++++.|. .|.+||+|.-.
T Consensus 203 ~~~~~~~S~l~WhP-------~~a-----Tql~~As~dd~~PviqlWDlR~as--------------------------- 243 (1049)
T KOG0307|consen 203 TPGRMHCSVLAWHP-------DHA-----TQLLVASGDDSAPVIQLWDLRFAS--------------------------- 243 (1049)
T ss_pred CCCccceeeeeeCC-------CCc-----eeeeeecCCCCCceeEeecccccC---------------------------
Confidence 554 588999999 652 4566666543 58999987532
Q ss_pred eeeeecCCCCceeeecCCCCceEEeecCCCCeEEEEEeCC---eEEEEECCCeEEEEeCCCCc
Q 009715 437 VCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE---SVLTVCREGHIKIWMRPGVA 496 (528)
Q Consensus 437 ~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~~s~d---~l~t~s~Dg~i~iW~~~~~~ 496 (528)
.|++.+++|...|.++.|++. .|++++.|+.|.+|+..+++
T Consensus 244 -------------------sP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgE 287 (1049)
T KOG0307|consen 244 -------------------SPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGE 287 (1049)
T ss_pred -------------------CchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCce
Confidence 255667789999999999983 49999999999999998865
No 166
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=4e-17 Score=147.71 Aligned_cols=225 Identities=14% Similarity=0.186 Sum_probs=168.6
Q ss_pred eEEEEECCCCCEEEEEeCCCcEEEEecCCceEEeeecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeec
Q 009715 282 INSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEG 361 (528)
Q Consensus 282 v~~l~~spdg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~~~~~~~~ 361 (528)
..|+.|++.|.+||+|+.||.|.|||+.+...-..+.+|..+|.+++||+||+.|++++.|..|.+||+..|.+++.+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir- 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR- 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-
Confidence 6799999999999999999999999999998888899999999999999999999999999999999999999999988
Q ss_pred CCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEEEeecCCCCCCCeecCCCC-CccCCceeee
Q 009715 362 HNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQ-SAHWDNVCPV 440 (528)
Q Consensus 362 h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~s~~~~-~~~~d~~~~~ 440 (528)
..++|..+.|+|. +- +..++.-.+..-.+-++..++ +.+-.......+..++... ..-....+.+
T Consensus 105 f~spv~~~q~hp~------k~------n~~va~~~~~sp~vi~~s~~~--h~~Lp~d~d~dln~sas~~~fdr~g~yIit 170 (405)
T KOG1273|consen 105 FDSPVWGAQWHPR------KR------NKCVATIMEESPVVIDFSDPK--HSVLPKDDDGDLNSSASHGVFDRRGKYIIT 170 (405)
T ss_pred ccCccceeeeccc------cC------CeEEEEEecCCcEEEEecCCc--eeeccCCCccccccccccccccCCCCEEEE
Confidence 8899999999992 22 234444444445555555422 2221112222222222211 1112356789
Q ss_pred ecCCCCceeeecCCCCceEEeecCC-CCeEEEEEeCC--eEEEEECCCeEEEEeCCCCc------cccC--CCccce---
Q 009715 441 GTLQPAPSMRDVPKLSPLVAHRVHT-EPLSGLIFTQE--SVLTVCREGHIKIWMRPGVA------ESQS--SSSETV--- 506 (528)
Q Consensus 441 g~~~~~~~~~d~~~~~~~~~~~~h~-~~V~~l~~s~d--~l~t~s~Dg~i~iW~~~~~~------~~~~--~~~~~v--- 506 (528)
|+..+.+.++|..+.+.+..++.-. ..|..+.|+.. .|+.-+.|+.||.+++..-. +... ..++-|
T Consensus 171 GtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~ 250 (405)
T KOG1273|consen 171 GTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKL 250 (405)
T ss_pred ecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhh
Confidence 9999999999999999998888665 78889988875 49999999999999976211 1111 111222
Q ss_pred ----EEEccCCceEEEeee
Q 009715 507 ----LSTSSKDKPLLSSKV 521 (528)
Q Consensus 507 ----l~~spd~~~l~s~~~ 521 (528)
..||.||.|++.++.
T Consensus 251 ~Wk~ccfs~dgeYv~a~s~ 269 (405)
T KOG1273|consen 251 QWKKCCFSGDGEYVCAGSA 269 (405)
T ss_pred hhhheeecCCccEEEeccc
Confidence 778999999998763
No 167
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.77 E-value=2.2e-17 Score=160.95 Aligned_cols=288 Identities=15% Similarity=0.202 Sum_probs=204.3
Q ss_pred CCCCCeEEEEecCCcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCC
Q 009715 165 AKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDG 244 (528)
Q Consensus 165 ~~~~~~l~~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~ 244 (528)
.+.|..|+.|+.||+|+||.+.+ +..+. .+. -.+.|.||+|+|.+..-+++......+.|.+..-+.
T Consensus 409 dp~G~wlasGsdDGtvriWEi~T-----gRcvr---~~~-----~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~ 475 (733)
T KOG0650|consen 409 DPSGEWLASGSDDGTVRIWEIAT-----GRCVR---TVQ-----FDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGD 475 (733)
T ss_pred cCCcceeeecCCCCcEEEEEeec-----ceEEE---EEe-----ecceeEEEEecCCCCceeEEEEecCceEEeCccccc
Confidence 68899999999999999999987 22221 111 345899999999887544444444456666654321
Q ss_pred CCCC-----ccccc---cccceeEEeccCC---CCCCCeEEEeecCCCeEEEEECCCCCEEEEEeCC---CcEEEEecCC
Q 009715 245 AGDS-----SFPVI---KDQTQFSVAHPRY---SKSNPIARWHICQGSINSIAFSTDGTYLATVGRD---GYLRVFDYSK 310 (528)
Q Consensus 245 ~~~~-----~~~~~---~~~~~~~~~~~~~---~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~~~d---g~i~vwd~~~ 310 (528)
..+. .+... ............. ....-+...-.|...|+.+.|+.+|.||++..-+ ..|.|.++..
T Consensus 476 ~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK 555 (733)
T KOG0650|consen 476 RLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSK 555 (733)
T ss_pred hhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEeccc
Confidence 1111 11111 0000000000000 1112244555688999999999999999998654 4789999987
Q ss_pred ceEEeeecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCeEEEEEecCCCCCCCCCCccceeEE
Q 009715 311 EQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYR 390 (528)
Q Consensus 311 ~~~~~~~~~~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~ 390 (528)
.....-|..-.+.|.++.|+|...+|+++.. ..|+|||+..++.+..+.....+|..++.+| .| -.
T Consensus 556 ~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp-------~G------Dn 621 (733)
T KOG0650|consen 556 RKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHP-------NG------DN 621 (733)
T ss_pred ccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecC-------CC------Ce
Confidence 7666666556688999999999999888864 6899999999888888887888999999999 88 57
Q ss_pred EEEEeCCCeEEEEEccCCeEEEEeecCCCCCCCeecCCCCCccCCceeeeecCCCCceeeecCCCCceEEeecCCCCeEE
Q 009715 391 FGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSG 470 (528)
Q Consensus 391 l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~ 470 (528)
|+.++.|+.++.+|+.... +|+++++-|...|++
T Consensus 622 li~gs~d~k~~WfDldlss----------------------------------------------kPyk~lr~H~~avr~ 655 (733)
T KOG0650|consen 622 LILGSYDKKMCWFDLDLSS----------------------------------------------KPYKTLRLHEKAVRS 655 (733)
T ss_pred EEEecCCCeeEEEEcccCc----------------------------------------------chhHHhhhhhhhhhh
Confidence 9999999999999987532 355566779999999
Q ss_pred EEEeCCe--EEEEECCCeEEEEe--CCCCc---------cccCCCccc----e--EEEccCCceEEEeeeeccc
Q 009715 471 LIFTQES--VLTVCREGHIKIWM--RPGVA---------ESQSSSSET----V--LSTSSKDKPLLSSKVVTSS 525 (528)
Q Consensus 471 l~~s~d~--l~t~s~Dg~i~iW~--~~~~~---------~~~~~~~~~----v--l~~spd~~~l~s~~~~gs~ 525 (528)
|+|++.+ +++|+.||++.|+. +.+.. ....+|... | ..|.|..-+|.+++.+|.+
T Consensus 656 Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~ti 729 (733)
T KOG0650|consen 656 VAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTI 729 (733)
T ss_pred hhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceE
Confidence 9999986 88889999999987 22221 122344433 5 4579999999999888653
No 168
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.77 E-value=3.4e-17 Score=160.41 Aligned_cols=248 Identities=20% Similarity=0.285 Sum_probs=175.8
Q ss_pred CCCCCeEEE--EecCCcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCC
Q 009715 165 AKDGHDLLI--GLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSK 242 (528)
Q Consensus 165 ~~~~~~l~~--g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~ 242 (528)
+.+...+++ .+..|.|-||+++. +++...... ........|+++.|+|.....|++++.||.|++|.+..
T Consensus 588 can~~rvAVPL~g~gG~iai~el~~----PGrLPDgv~----p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a 659 (1012)
T KOG1445|consen 588 CANNKRVAVPLAGSGGVIAIYELNE----PGRLPDGVM----PGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTA 659 (1012)
T ss_pred eeccceEEEEecCCCceEEEEEcCC----CCCCCcccc----cccccCceeeecccCCCChHHeeecccCceEEEEEecc
Confidence 445555655 44568999999986 333322211 11226678999999998887999999999999999987
Q ss_pred CCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECC-CCCEEEEEeCCCcEEEEecCCceEEeeecccC
Q 009715 243 DGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST-DGTYLATVGRDGYLRVFDYSKEQLICGGKSYY 321 (528)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp-dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 321 (528)
++..+.. ..+-..+.+|...|+++.|+| -...|++++.|-+|++||+.+++....+.+|.
T Consensus 660 ~gl~e~~-------------------~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHt 720 (1012)
T KOG1445|consen 660 NGLPENE-------------------MTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHT 720 (1012)
T ss_pred CCCCccc-------------------CCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCc
Confidence 6543322 356778899999999999999 56789999999999999999999999999999
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe-EEEEeecCC-CCeEEEEEecCCCCCCCCCCccceeEEEEEEeCC--
Q 009715 322 GALLCCAWSMDGKYILTGGEDDLVQVWSMEDRK-VVAWGEGHN-SWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQD-- 397 (528)
Q Consensus 322 ~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~-~~~~~~~h~-~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D-- 397 (528)
+.|..++|||||+.+++.+.||.|+||+-++++ +++.-.+-. ..---|.|.- || ++++..+.|
T Consensus 721 dqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wac-------dg------r~viv~Gfdk~ 787 (1012)
T KOG1445|consen 721 DQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWAC-------DG------RIVIVVGFDKS 787 (1012)
T ss_pred CceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEe-------cC------cEEEEeccccc
Confidence 999999999999999999999999999998864 444433321 1223456665 88 566666655
Q ss_pred --CeEEEEEccCCe--EEEEeecCCCCCCCeecCCCCCccC----CceeeeecCCCCceeeecCCCCceE
Q 009715 398 --TRLLLWDLEMDE--IVVPLRRGPLGGSPTFSTGSQSAHW----DNVCPVGTLQPAPSMRDVPKLSPLV 459 (528)
Q Consensus 398 --~~i~lwd~~~~~--~~~~~~~~~~~~~~~~s~~~~~~~~----d~~~~~g~~~~~~~~~d~~~~~~~~ 459 (528)
.+|.+||..+-. .+.+... ..++.-...++ ...+..|.-+..+.+|++--..|+.
T Consensus 788 SeRQv~~Y~Aq~l~~~pl~t~~l-------Dvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~esPy~ 850 (1012)
T KOG1445|consen 788 SERQVQMYDAQTLDLRPLYTQVL-------DVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYESPYL 850 (1012)
T ss_pred chhhhhhhhhhhccCCcceeeee-------cccCccccccccCCCceEEEecCCCceEEEEEecCCCcee
Confidence 468888865432 2222111 11111111121 2334777778888888876655543
No 169
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.76 E-value=4.9e-17 Score=145.50 Aligned_cols=240 Identities=17% Similarity=0.221 Sum_probs=174.0
Q ss_pred CCCeEEEEec----CCcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeCC-------ceE
Q 009715 167 DGHDLLIGLN----SGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHAD-------GNL 235 (528)
Q Consensus 167 ~~~~l~~g~~----~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~d-------g~v 235 (528)
+.-.+++|++ +.+|.+.++...... ...+.+..|.+.|+.++-+|..+++|+++..+ -.+
T Consensus 25 d~icFlvgTnslK~dNqVhll~~d~e~s~---------l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~a 95 (370)
T KOG1007|consen 25 DHICFLVGTNSLKEDNQVHLLRLDSEGSE---------LLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGA 95 (370)
T ss_pred cceEEEEeccccCCcceeEEEEecCccch---------hhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeE
Confidence 3334566663 467887777652111 11122223789999999999998788887653 246
Q ss_pred EEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEe-ecCCCeEEEEECCCCCEEEEEeCCCcEEEEecCCceEE
Q 009715 236 YVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWH-ICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLI 314 (528)
Q Consensus 236 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~spdg~~l~s~~~dg~i~vwd~~~~~~~ 314 (528)
-||.+..+-... .....+.+..+. .+-+.|.|+.|.|++..+++-. |..|.+|+++.+..+
T Consensus 96 aiw~ipe~~~~S-----------------~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~ 157 (370)
T KOG1007|consen 96 AIWQIPEPLGQS-----------------NSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKI 157 (370)
T ss_pred EEEecccccCcc-----------------ccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcch
Confidence 799987532210 011123333343 3457899999999999998886 788999999877652
Q ss_pred -eeec-----ccCCCeEEEEEcC--CCCEEEEEeCCCcEEEEECCCCeEEEEee-cCCCCeEEEEEecCCCCCCCCCCcc
Q 009715 315 -CGGK-----SYYGALLCCAWSM--DGKYILTGGEDDLVQVWSMEDRKVVAWGE-GHNSWVSGVAFDSYWSQPNSDGTAE 385 (528)
Q Consensus 315 -~~~~-----~~~~~v~~l~~sp--~g~~l~sg~~dg~v~vwd~~~~~~~~~~~-~h~~~V~~v~f~p~~~~~~~dg~~~ 385 (528)
..+. .+.....+-+|+| |+..+++. .|+++..||+++.++...++ +|...|..+.|+| +-.
T Consensus 158 vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNp-------nkq-- 227 (370)
T KOG1007|consen 158 VAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNP-------NKQ-- 227 (370)
T ss_pred heeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcchhhhhcceeeeccCCC-------Cce--
Confidence 2221 2445677788998 78777776 48899999999987766665 6888999999999 431
Q ss_pred ceeEEEEEEeCCCeEEEEEccCCeEEEEeecCCCCCCCeecCCCCCccCCceeeeecCCCCceeeecCCCCceEEeecCC
Q 009715 386 TVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHT 465 (528)
Q Consensus 386 ~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~ 465 (528)
.+|++|+.|+.|+|||.++-+ .|+..+.+|.
T Consensus 228 ---~~lvt~gDdgyvriWD~R~tk----------------------------------------------~pv~el~~Hs 258 (370)
T KOG1007|consen 228 ---HILVTCGDDGYVRIWDTRKTK----------------------------------------------FPVQELPGHS 258 (370)
T ss_pred ---EEEEEcCCCccEEEEeccCCC----------------------------------------------ccccccCCCc
Confidence 689999999999999998643 3566777899
Q ss_pred CCeEEEEEeCC---eEEEEECCCeEEEEeC
Q 009715 466 EPLSGLIFTQE---SVLTVCREGHIKIWMR 492 (528)
Q Consensus 466 ~~V~~l~~s~d---~l~t~s~Dg~i~iW~~ 492 (528)
..|.++.|+|. .|+++|.|..|.+|..
T Consensus 259 HWvW~VRfn~~hdqLiLs~~SDs~V~Lsca 288 (370)
T KOG1007|consen 259 HWVWAVRFNPEHDQLILSGGSDSAVNLSCA 288 (370)
T ss_pred eEEEEEEecCccceEEEecCCCceeEEEec
Confidence 99999999994 3899999999999985
No 170
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.76 E-value=7.1e-15 Score=149.17 Aligned_cols=350 Identities=23% Similarity=0.341 Sum_probs=236.7
Q ss_pred ccCCCCCCCccccCCcccCCcccCCCCCCcceeeeCCCccEEEEeCCCcE-EEEeCCCCCC-C-------CCCCC-eEEE
Q 009715 104 GFGGGNGGSKSISGSSRIGSLGASSSSTSMTNTNFDGKGTYIIFNVGDAI-FISDLNSQDK-D-------AKDGH-DLLI 173 (528)
Q Consensus 104 sf~gh~~~v~~v~~s~~~~~~~~s~s~~s~~~~~~~~~g~~~~~~~~~~i-~v~~~~~~~~-~-------~~~~~-~l~~ 173 (528)
.+.+|...+.++.+.+ .+..+...+ .++.+..|+..... .+..+..... . .+++. .++.
T Consensus 60 ~~~~~~~~i~~~~~~~-~~~~~~~~~----------~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (466)
T COG2319 60 LLRGHEDSITSIAFSP-DGELLLSGS----------SDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLA 128 (466)
T ss_pred eeeeccceEEEEEECC-CCcEEEEec----------CCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEec
Confidence 3568888888888877 332222222 36677777655543 3333332111 0 24455 4444
Q ss_pred -EecCCcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeC-CceEEEEEcCCCCCCCCccc
Q 009715 174 -GLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHA-DGNLYVYEKSKDGAGDSSFP 251 (528)
Q Consensus 174 -g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~-dg~v~vwd~~~~~~~~~~~~ 251 (528)
+..++.+.+||+.... . .......|...|.+++|+|++. .+++++. |+.+++|+...
T Consensus 129 ~~~~d~~~~~~~~~~~~-----~------~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--------- 187 (466)
T COG2319 129 SSSLDGTVKLWDLSTPG-----K------LIRTLEGHSESVTSLAFSPDGK-LLASGSSLDGTIKLWDLRT--------- 187 (466)
T ss_pred cCCCCccEEEEEecCCC-----e------EEEEEecCcccEEEEEECCCCC-EEEecCCCCCceEEEEcCC---------
Confidence 3448999999987400 0 1111123888999999999999 7888875 99999999875
Q ss_pred cccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCCCC-EEEEEeCCCcEEEEecCCceEEe-eecccCCCeEEEEE
Q 009715 252 VIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGT-YLATVGRDGYLRVFDYSKEQLIC-GGKSYYGALLCCAW 329 (528)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spdg~-~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~~v~~l~~ 329 (528)
...+..+..|...|.+++|+|++. .+++++.|+.|++||...+..+. .+..|.... ...|
T Consensus 188 -----------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~ 249 (466)
T COG2319 188 -----------------GKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSF 249 (466)
T ss_pred -----------------CceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeE
Confidence 234555666889999999999988 55555899999999998888877 677787765 4489
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCeE-EEEeecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCC
Q 009715 330 SMDGKYILTGGEDDLVQVWSMEDRKV-VAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMD 408 (528)
Q Consensus 330 sp~g~~l~sg~~dg~v~vwd~~~~~~-~~~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~ 408 (528)
+|++.++++++.|+.+++|+++.... +..+.+|...|.++.|.| ++ ..+++++.|+.+++||+...
T Consensus 250 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-------~~------~~~~~~~~d~~~~~~~~~~~ 316 (466)
T COG2319 250 SPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSP-------DG------KLLASGSSDGTVRLWDLETG 316 (466)
T ss_pred CCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECC-------CC------CEEEEeeCCCcEEEEEcCCC
Confidence 99998899999999999999987654 444467899999999998 77 56777888899999999888
Q ss_pred eEEEEee--cCC-CCCCCeecCCCCCccCCceeeeecCCCCceeeecCCCCceEEeecCCCCeEEEEEeCC-eEEE-EEC
Q 009715 409 EIVVPLR--RGP-LGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE-SVLT-VCR 483 (528)
Q Consensus 409 ~~~~~~~--~~~-~~~~~~~s~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~~s~d-~l~t-~s~ 483 (528)
....... ... ....+.+ ... .......+..+..+.+|+............+ ..+..+.+.++ .++. +..
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 390 (466)
T COG2319 317 KLLSSLTLKGHEGPVSSLSF-SPD----GSLLVSGGSDDGTIRLWDLRTGKPLKTLEGH-SNVLSVSFSPDGRVVSSGST 390 (466)
T ss_pred ceEEEeeecccCCceEEEEE-CCC----CCEEEEeecCCCcEEeeecCCCceeEEecCC-ceEEEEEECCCCCEEEEecC
Confidence 7766655 222 2333444 211 1122222245567777888777623222222 22788888872 2333 689
Q ss_pred CCeEEEEeCCCCccccCCCc--cce--EEEccCCceEEEeeee
Q 009715 484 EGHIKIWMRPGVAESQSSSS--ETV--LSTSSKDKPLLSSKVV 522 (528)
Q Consensus 484 Dg~i~iW~~~~~~~~~~~~~--~~v--l~~spd~~~l~s~~~~ 522 (528)
++.+.+|+............ ..+ ..+++++..++++...
T Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (466)
T COG2319 391 DGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSD 433 (466)
T ss_pred CCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCC
Confidence 99999999987664433221 344 6678888888875443
No 171
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=6e-16 Score=157.89 Aligned_cols=275 Identities=19% Similarity=0.210 Sum_probs=190.8
Q ss_pred ccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEE
Q 009715 208 VNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAF 287 (528)
Q Consensus 208 ~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 287 (528)
.|.-.++|.+++|++. ++|+|..||.|.+|.--.. .......+.|+.|..+|.+++|
T Consensus 203 ~Htf~~t~~~~spn~~-~~Aa~d~dGrI~vw~d~~~----------------------~~~~~t~t~lHWH~~~V~~L~f 259 (792)
T KOG1963|consen 203 HHTFNITCVALSPNER-YLAAGDSDGRILVWRDFGS----------------------SDDSETCTLLHWHHDEVNSLSF 259 (792)
T ss_pred hhcccceeEEeccccc-eEEEeccCCcEEEEecccc----------------------ccccccceEEEecccccceeEE
Confidence 3777899999999999 9999999999999985320 1124567888999999999999
Q ss_pred CCCCCEEEEEeCCCcEEEEecCCceEEeeecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeec------
Q 009715 288 STDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEG------ 361 (528)
Q Consensus 288 spdg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~~~~~~~~------ 361 (528)
+++|.+|++|+..+.+.+|.+.+++ .+-+....++|..+.++||+.+.+....|+.|.+..+.+.+...++.+
T Consensus 260 S~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~ 338 (792)
T KOG1963|consen 260 SSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTP 338 (792)
T ss_pred ecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCc
Confidence 9999999999999999999999988 344445678999999999999999999999999998766544333332
Q ss_pred -----CCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEEEeecCC----CC--------CCCe
Q 009715 362 -----HNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGP----LG--------GSPT 424 (528)
Q Consensus 362 -----h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~----~~--------~~~~ 424 (528)
..+-.+.++++| -- +.++-.+..+.|.+||+.+.+.+..+.... .. ..++
T Consensus 339 ~~k~~~~~l~t~~~idp-------r~------~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~ 405 (792)
T KOG1963|consen 339 STKTRPQSLTTGVSIDP-------RT------NSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVA 405 (792)
T ss_pred cccccccccceeEEEcC-------CC------CceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeeh
Confidence 244567788887 32 467888899999999999888777665321 11 1122
Q ss_pred ecCCCCCccCCceeee-------ecCCCCceeeecCCCC----ceE-EeecCCCCeEEEEEeC----CeEEEEECCCeEE
Q 009715 425 FSTGSQSAHWDNVCPV-------GTLQPAPSMRDVPKLS----PLV-AHRVHTEPLSGLIFTQ----ESVLTVCREGHIK 488 (528)
Q Consensus 425 ~s~~~~~~~~d~~~~~-------g~~~~~~~~~d~~~~~----~~~-~~~~h~~~V~~l~~s~----d~l~t~s~Dg~i~ 488 (528)
.+..+ .|-.++.+ ......++.|-..... ... ....|...+...+|.+ ++.+|++.||.++
T Consensus 406 ~~~~g---s~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~K 482 (792)
T KOG1963|consen 406 RSRFG---SWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFK 482 (792)
T ss_pred hhccc---eEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEE
Confidence 22222 12111111 1112234445432211 111 2235777776766655 3699999999999
Q ss_pred EEeCCCCccccC----------C--Cccce--EEEccCCceEEEeeee
Q 009715 489 IWMRPGVAESQS----------S--SSETV--LSTSSKDKPLLSSKVV 522 (528)
Q Consensus 489 iW~~~~~~~~~~----------~--~~~~v--l~~spd~~~l~s~~~~ 522 (528)
||-+...+.... + |.-.+ ++|+-||..|+.+-.+
T Consensus 483 iW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~s~~~ 530 (792)
T KOG1963|consen 483 IWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAVSFDD 530 (792)
T ss_pred EEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEEEecCC
Confidence 999854432211 1 22222 7889999888876443
No 172
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.75 E-value=1.3e-16 Score=142.91 Aligned_cols=244 Identities=18% Similarity=0.256 Sum_probs=167.1
Q ss_pred ceeEEEEe--eCCCcEEEEEeC----CceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEE
Q 009715 212 RCTSVTWV--PGGDGAFVVGHA----DGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSI 285 (528)
Q Consensus 212 ~v~~l~~~--p~g~~~l~tg~~----dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 285 (528)
++.++.|+ |+.+.+|+.|+. ...|.|..+..+......... -.|.-+++.+
T Consensus 46 ~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~-----------------------fd~~YP~tK~ 102 (364)
T KOG0290|consen 46 PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDAN-----------------------FDHPYPVTKL 102 (364)
T ss_pred ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCC-----------------------CCCCCCccce
Confidence 57788887 445557888873 356777766543222111110 1245688899
Q ss_pred EECCCC-----CEEEEEeCCCcEEEEecCCce--EE--e-----eecccCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEC
Q 009715 286 AFSTDG-----TYLATVGRDGYLRVFDYSKEQ--LI--C-----GGKSYYGALLCCAWSM-DGKYILTGGEDDLVQVWSM 350 (528)
Q Consensus 286 ~~spdg-----~~l~s~~~dg~i~vwd~~~~~--~~--~-----~~~~~~~~v~~l~~sp-~g~~l~sg~~dg~v~vwd~ 350 (528)
.|.|+. .+||+++ -.+|+|.+...+ .. . +-..+..++++..|+. +.++|.+++-|-++.|||+
T Consensus 103 ~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdi 180 (364)
T KOG0290|consen 103 MWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDI 180 (364)
T ss_pred EecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEE
Confidence 999975 3566654 379999987422 11 1 1123567899999987 7789999999999999999
Q ss_pred CCCe---EEEEeecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEEEeecCCC-CC-CCee
Q 009715 351 EDRK---VVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPL-GG-SPTF 425 (528)
Q Consensus 351 ~~~~---~~~~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~-~~-~~~~ 425 (528)
+++. ....+-+|...|..|+|.. ++. ..|++++.||.||+||++..+.-..+...+. .. -+.+
T Consensus 181 e~~~~~~vkTQLIAHDKEV~DIaf~~-------~s~-----~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRL 248 (364)
T KOG0290|consen 181 ETGVSGTVKTQLIAHDKEVYDIAFLK-------GSR-----DVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRL 248 (364)
T ss_pred eeccccceeeEEEecCcceeEEEecc-------Ccc-----ceEEEecCCCcEEEEEecccccceEEecCCCCCCcceee
Confidence 9863 3556678999999999987 553 6899999999999999998765444433222 11 1122
Q ss_pred cCCCCCccCCceeeee-cCCCCceeeecCCC-CceEEeecCCCCeEEEEEeCC---eEEEEECCCeEEEEeCCCC
Q 009715 426 STGSQSAHWDNVCPVG-TLQPAPSMRDVPKL-SPLVAHRVHTEPLSGLIFTQE---SVLTVCREGHIKIWMRPGV 495 (528)
Q Consensus 426 s~~~~~~~~d~~~~~g-~~~~~~~~~d~~~~-~~~~~~~~h~~~V~~l~~s~d---~l~t~s~Dg~i~iW~~~~~ 495 (528)
+...+.. +.+++. -....+.+.|++.. .++.++++|.+.|++++|.|. .|.|||.|..+.|||++.-
T Consensus 249 swnkqDp---nymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~ 320 (364)
T KOG0290|consen 249 SWNKQDP---NYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQM 320 (364)
T ss_pred ccCcCCc---hHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccc
Confidence 2221111 111222 22345777888754 588999999999999999995 3999999999999998653
No 173
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=2.1e-16 Score=138.19 Aligned_cols=237 Identities=16% Similarity=0.180 Sum_probs=166.8
Q ss_pred ceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCCC
Q 009715 212 RCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDG 291 (528)
Q Consensus 212 ~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spdg 291 (528)
.|..-+|+|.++ +|++|..+|.|.++.+..-..... ......++...++|.++|+.++|..
T Consensus 12 tvf~qa~sp~~~-~l~agn~~G~iav~sl~sl~s~sa----------------~~~gk~~iv~eqahdgpiy~~~f~d-- 72 (325)
T KOG0649|consen 12 TVFAQAISPSKQ-YLFAGNLFGDIAVLSLKSLDSGSA----------------EPPGKLKIVPEQAHDGPIYYLAFHD-- 72 (325)
T ss_pred HHHHHhhCCcce-EEEEecCCCeEEEEEehhhhcccc----------------CCCCCcceeeccccCCCeeeeeeeh--
Confidence 466778999999 999999999999999875211111 1112345556689999999999983
Q ss_pred CEEEEEeCCCcEEEEecCCceE------Eeee--ccc-----CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEE
Q 009715 292 TYLATVGRDGYLRVFDYSKEQL------ICGG--KSY-----YGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAW 358 (528)
Q Consensus 292 ~~l~s~~~dg~i~vwd~~~~~~------~~~~--~~~-----~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~~~~~ 358 (528)
.+|++++ ||.|+-|..+.... +... .-| --.|+++...|...-++.++.|+.++-||+++|+..+.
T Consensus 73 ~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~ 151 (325)
T KOG0649|consen 73 DFLLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQRE 151 (325)
T ss_pred hheeecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEE
Confidence 3666665 59999987754322 1000 111 23588899999877777777999999999999999999
Q ss_pred eecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEEEeecCCCCCCCeecCCCCCccCCcee
Q 009715 359 GEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVC 438 (528)
Q Consensus 359 ~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~d~~~ 438 (528)
+++|.+.|.++.-.. .++ .+++|++||++|+||.++++++..+..-...
T Consensus 152 ~rGHtDYvH~vv~R~------~~~-------qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~------------------ 200 (325)
T KOG0649|consen 152 YRGHTDYVHSVVGRN------ANG-------QILSGAEDGTVRVWDTKTQKHVSMIEPYKNP------------------ 200 (325)
T ss_pred EcCCcceeeeeeecc------cCc-------ceeecCCCccEEEEeccccceeEEeccccCh------------------
Confidence 999999999998833 044 7999999999999999999999887641110
Q ss_pred eeecCCCCceeeecCCCCceEEeecCC-CCeEEEEEeCCeEEEEECCCeEEEEeCCCCccc-cCCCccceEEEccCCceE
Q 009715 439 PVGTLQPAPSMRDVPKLSPLVAHRVHT-EPLSGLIFTQESVLTVCREGHIKIWMRPGVAES-QSSSSETVLSTSSKDKPL 516 (528)
Q Consensus 439 ~~g~~~~~~~~~d~~~~~~~~~~~~h~-~~V~~l~~s~d~l~t~s~Dg~i~iW~~~~~~~~-~~~~~~~vl~~spd~~~l 516 (528)
..++.|- ..|-+++-+.|.|++|+. ..+.+|+++.-... .+.....+-.+.-+++.+
T Consensus 201 --------------------~~lRp~~g~wigala~~edWlvCGgG-p~lslwhLrsse~t~vfpipa~v~~v~F~~d~v 259 (325)
T KOG0649|consen 201 --------------------NLLRPDWGKWIGALAVNEDWLVCGGG-PKLSLWHLRSSESTCVFPIPARVHLVDFVDDCV 259 (325)
T ss_pred --------------------hhcCcccCceeEEEeccCceEEecCC-CceeEEeccCCCceEEEecccceeEeeeecceE
Confidence 1122233 357889999998887765 57999999875532 233333443333344444
Q ss_pred EEee
Q 009715 517 LSSK 520 (528)
Q Consensus 517 ~s~~ 520 (528)
++++
T Consensus 260 l~~G 263 (325)
T KOG0649|consen 260 LIGG 263 (325)
T ss_pred EEec
Confidence 4443
No 174
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.75 E-value=8.6e-17 Score=149.69 Aligned_cols=128 Identities=14% Similarity=0.227 Sum_probs=114.7
Q ss_pred EEEeecCCCeEEEEECC-CCCEEEEEeCCCcEEEEecCCc-------eEEeeecccCCCeEEEEEcCCC-CEEEEEeCCC
Q 009715 273 ARWHICQGSINSIAFST-DGTYLATVGRDGYLRVFDYSKE-------QLICGGKSYYGALLCCAWSMDG-KYILTGGEDD 343 (528)
Q Consensus 273 ~~~~~h~~~v~~l~~sp-dg~~l~s~~~dg~i~vwd~~~~-------~~~~~~~~~~~~v~~l~~sp~g-~~l~sg~~dg 343 (528)
-.+.+|+++|..++|+| +...||+|+.|.+|.||.+..+ +++..+.+|...|--++|+|.. +.|++++.|.
T Consensus 75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn 154 (472)
T KOG0303|consen 75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDN 154 (472)
T ss_pred CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCc
Confidence 34578999999999999 7789999999999999998654 3466788999999999999954 5788999999
Q ss_pred cEEEEECCCCeEEEEeecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEEEe
Q 009715 344 LVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPL 414 (528)
Q Consensus 344 ~v~vwd~~~~~~~~~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~ 414 (528)
.|.+||+.+++.+.++. |.+.|.++.|+. || .+|++.+.|..|||||.++++.+..-
T Consensus 155 ~v~iWnv~tgeali~l~-hpd~i~S~sfn~-------dG------s~l~TtckDKkvRv~dpr~~~~v~e~ 211 (472)
T KOG0303|consen 155 TVSIWNVGTGEALITLD-HPDMVYSMSFNR-------DG------SLLCTTCKDKKVRVIDPRRGTVVSEG 211 (472)
T ss_pred eEEEEeccCCceeeecC-CCCeEEEEEecc-------CC------ceeeeecccceeEEEcCCCCcEeeec
Confidence 99999999999988888 999999999999 99 89999999999999999999987654
No 175
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.74 E-value=7.3e-17 Score=156.71 Aligned_cols=216 Identities=17% Similarity=0.214 Sum_probs=169.9
Q ss_pred CCCCCeEEEEecCCcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCC
Q 009715 165 AKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDG 244 (528)
Q Consensus 165 ~~~~~~l~~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~ 244 (528)
++....|+.++.+|.|.+|++........+....-. .+..|.++|.|++..++++ .+++|+.||+|+.|++....
T Consensus 303 ~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~----tfraH~gPVl~v~v~~n~~-~~ysgg~Dg~I~~w~~p~n~ 377 (577)
T KOG0642|consen 303 HPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPIL----TFRAHEGPVLCVVVPSNGE-HCYSGGIDGTIRCWNLPPNQ 377 (577)
T ss_pred CCCCCeEEEeccccchhhhhhcccCCccccceeeeE----EEecccCceEEEEecCCce-EEEeeccCceeeeeccCCCC
Confidence 678889999999999999999332222222222222 2335999999999999999 89999999999999987432
Q ss_pred CCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCCCCEEEEEeCCCcEEEEecCCceEEeee-------
Q 009715 245 AGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGG------- 317 (528)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~~~dg~i~vwd~~~~~~~~~~------- 317 (528)
.....+ ........+.+|++.|..+++|+...+|++++.||+++.|+...... +.+
T Consensus 378 dp~ds~----------------dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g 440 (577)
T KOG0642|consen 378 DPDDSY----------------DPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHG 440 (577)
T ss_pred Cccccc----------------CcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccC
Confidence 221111 11234456889999999999999888999999999999999764432 000
Q ss_pred --------------------------------------cc-------cCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 009715 318 --------------------------------------KS-------YYGALLCCAWSMDGKYILTGGEDDLVQVWSMED 352 (528)
Q Consensus 318 --------------------------------------~~-------~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~ 352 (528)
.. -...+..+.++|.+.+.+++.+|+.|+++|..+
T Consensus 441 ~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~ 520 (577)
T KOG0642|consen 441 YPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKT 520 (577)
T ss_pred CcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccc
Confidence 00 012356788999999999999999999999999
Q ss_pred CeEEEEeecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEEEee
Q 009715 353 RKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLR 415 (528)
Q Consensus 353 ~~~~~~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~ 415 (528)
+++++....|...|+++++.| +| -+|++++.|+.+++|.+....++....
T Consensus 521 ~~~l~s~~a~~~svtslai~~-------ng------~~l~s~s~d~sv~l~kld~k~~~~es~ 570 (577)
T KOG0642|consen 521 GKILHSMVAHKDSVTSLAIDP-------NG------PYLMSGSHDGSVRLWKLDVKTCVLEST 570 (577)
T ss_pred cccchheeeccceecceeecC-------CC------ceEEeecCCceeehhhccchheeeccc
Confidence 999999999999999999999 88 799999999999999998888776543
No 176
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.74 E-value=5.2e-16 Score=158.09 Aligned_cols=257 Identities=17% Similarity=0.180 Sum_probs=177.6
Q ss_pred CcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccc
Q 009715 178 GDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQT 257 (528)
Q Consensus 178 G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~ 257 (528)
+.+++|++.... .+. ..+. -...|+|++|+|...++++.|+.+|.|.+||++..+....
T Consensus 222 ~~~~vW~~~~p~-----~Pe--~~~~-----~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~--------- 280 (555)
T KOG1587|consen 222 GVLLVWSLKNPN-----TPE--LVLE-----SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPP--------- 280 (555)
T ss_pred ceEEEEecCCCC-----Cce--EEEe-----cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCC---------
Confidence 379999998621 111 1111 5678999999999998999999999999999987443211
Q ss_pred eeEEeccCCCCCCCeEEEeecCCCeEEEEECCCC--CEEEEEeCCCcEEEEecCCceE------Eeeec------ccCCC
Q 009715 258 QFSVAHPRYSKSNPIARWHICQGSINSIAFSTDG--TYLATVGRDGYLRVFDYSKEQL------ICGGK------SYYGA 323 (528)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spdg--~~l~s~~~dg~i~vwd~~~~~~------~~~~~------~~~~~ 323 (528)
......-..|..++..+.|..+. .-|++++.||.|..|+++.-.. ..... .-...
T Consensus 281 -----------s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~ 349 (555)
T KOG1587|consen 281 -----------SGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVG 349 (555)
T ss_pred -----------cccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccc
Confidence 11112234577899999997643 4599999999999998864322 11111 11246
Q ss_pred eEEEEEcC-CCCEEEEEeCCCcEEEEECC---CC-----eEEEEeecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEE
Q 009715 324 LLCCAWSM-DGKYILTGGEDDLVQVWSME---DR-----KVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSV 394 (528)
Q Consensus 324 v~~l~~sp-~g~~l~sg~~dg~v~vwd~~---~~-----~~~~~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~ 394 (528)
+++++|.+ +...+++|.++|.|.--+-. .. +.+..+..|.+.|+++.++|+. - ..|.++
T Consensus 350 ~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~------~------k~fls~ 417 (555)
T KOG1587|consen 350 ATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFY------P------KNFLSV 417 (555)
T ss_pred eeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCc------c------ceeeee
Confidence 78899988 55678999999998763322 22 2233455689999999999941 1 456666
Q ss_pred eCCCeEEEEEcc-CCeEEEEeecCCCCCCCeecCCCCCccCCceeeeecCCCCceeeecCCCCceEEeecCCCCeEEEEE
Q 009715 395 GQDTRLLLWDLE-MDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIF 473 (528)
Q Consensus 395 s~D~~i~lwd~~-~~~~~~~~~~~~~~~~~~~s~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~~ 473 (528)
+ |.+|+||... ... |+..+..+...|++++|
T Consensus 418 g-DW~vriWs~~~~~~-----------------------------------------------Pl~~~~~~~~~v~~vaW 449 (555)
T KOG1587|consen 418 G-DWTVRIWSEDVIAS-----------------------------------------------PLLSLDSSPDYVTDVAW 449 (555)
T ss_pred c-cceeEeccccCCCC-----------------------------------------------cchhhhhccceeeeeEE
Confidence 6 9999999865 222 33334456777999999
Q ss_pred eCCe---EEEEECCCeEEEEeCCCCccccC----CCccce--EEEccCCceEEEeeeecccc
Q 009715 474 TQES---VLTVCREGHIKIWMRPGVAESQS----SSSETV--LSTSSKDKPLLSSKVVTSSY 526 (528)
Q Consensus 474 s~d~---l~t~s~Dg~i~iW~~~~~~~~~~----~~~~~v--l~~spd~~~l~s~~~~gs~~ 526 (528)
+|-. ++++..||.|.|||+........ ...... +.++++|+.|+.|...|.++
T Consensus 450 SptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~ 511 (555)
T KOG1587|consen 450 SPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTH 511 (555)
T ss_pred cCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEE
Confidence 9964 88888999999999865442211 111212 77799999999999998543
No 177
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.73 E-value=3.3e-17 Score=159.06 Aligned_cols=256 Identities=13% Similarity=0.153 Sum_probs=178.0
Q ss_pred ccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEE
Q 009715 208 VNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAF 287 (528)
Q Consensus 208 ~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 287 (528)
.|...|+.++|+|-.. .|++++.||.|++|+++. ... .......++..|++|.++|.|+++
T Consensus 292 s~~d~ir~l~~~~sep-~lit~sed~~lk~WnLqk-~~~-----------------s~~~~~epi~tfraH~gPVl~v~v 352 (577)
T KOG0642|consen 292 SHDDCIRALAFHPSEP-VLITASEDGTLKLWNLQK-AKK-----------------SAEKDVEPILTFRAHEGPVLCVVV 352 (577)
T ss_pred cchhhhhhhhcCCCCC-eEEEeccccchhhhhhcc-cCC-----------------ccccceeeeEEEecccCceEEEEe
Confidence 3888999999999988 899999999999999953 110 112346789999999999999999
Q ss_pred CCCCCEEEEEeCCCcEEEEecCCc----------eEEeeecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEE
Q 009715 288 STDGTYLATVGRDGYLRVFDYSKE----------QLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVA 357 (528)
Q Consensus 288 spdg~~l~s~~~dg~i~vwd~~~~----------~~~~~~~~~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~~~~ 357 (528)
.+++..+++|+.||.|+.|++... .....+.+|.+.|+.+++|+....|++++.||++++|+.....+ .
T Consensus 353 ~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~ 431 (577)
T KOG0642|consen 353 PSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-C 431 (577)
T ss_pred cCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-c
Confidence 999999999999999999966411 22345778999999999999999999999999999999876655 3
Q ss_pred Eeec--CCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEEEeecCCCCCCCeecCCCC--Ccc
Q 009715 358 WGEG--HNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQ--SAH 433 (528)
Q Consensus 358 ~~~~--h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~s~~~~--~~~ 433 (528)
++.. -.+.-.++.|-.. +- .++++...-+.--++|+.....+..+........ .-.+... +..
T Consensus 432 ~f~~~~e~g~Plsvd~~ss------~~------a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~-~~~~~in~vVs~ 498 (577)
T KOG0642|consen 432 TFGEPKEHGYPLSVDRTSS------RP------AHSLASFRFGYTSIDDMEVVSDLLIFESSASPGP-RRYPQINKVVSH 498 (577)
T ss_pred ccCCccccCCcceEeeccc------hh------HhhhhhcccccccchhhhhhhheeeccccCCCcc-cccCccceEEec
Confidence 3332 1223345555320 00 1222222222223333344333333332111100 0000000 000
Q ss_pred CC-ceeeeecCCCCceeeecCCCCceEEeecCCCCeEEEEEeCCe--EEEEECCCeEEEEeCCCCc
Q 009715 434 WD-NVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWMRPGVA 496 (528)
Q Consensus 434 ~d-~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~~s~d~--l~t~s~Dg~i~iW~~~~~~ 496 (528)
.. ........+..++++|..+++++.....|...++++++.|++ |++++.||.+++|.+....
T Consensus 499 ~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~ 564 (577)
T KOG0642|consen 499 PTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKT 564 (577)
T ss_pred CCCCeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccchh
Confidence 01 122344557789999999999999999999999999999985 9999999999999986654
No 178
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.72 E-value=4e-18 Score=171.67 Aligned_cols=235 Identities=15% Similarity=0.171 Sum_probs=177.6
Q ss_pred CCeEEEeecCCCeEEEEECCCCCEEEEEeCCCcEEEEecCCceEEeeecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 009715 270 NPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWS 349 (528)
Q Consensus 270 ~~~~~~~~h~~~v~~l~~spdg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd 349 (528)
+.++.+.+|..+|+|+.|...|.++++|++|..++||..+++.++....+|.+.|+.++.+.+..++++++.|..|++|.
T Consensus 181 k~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWr 260 (1113)
T KOG0644|consen 181 KNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWR 260 (1113)
T ss_pred HHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEe
Confidence 44566778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEeecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEEE--------------ee
Q 009715 350 MEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVP--------------LR 415 (528)
Q Consensus 350 ~~~~~~~~~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~--------------~~ 415 (528)
+..+.++..+.+|.+.|++++|+| +.+.+.||++++||.+-.-.+.. +.
T Consensus 261 l~~~~pvsvLrghtgavtaiafsP-----------------~~sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~ 323 (1113)
T KOG0644|consen 261 LPDGAPVSVLRGHTGAVTAIAFSP-----------------RASSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSIL 323 (1113)
T ss_pred cCCCchHHHHhccccceeeeccCc-----------------cccCCCCCceEeccccccccccCCCCCCcccccceeeee
Confidence 999999999999999999999999 34788999999999982211111 00
Q ss_pred cCCC-CCCCeecCCCCCccC---------------------CceeeeecCCCCceeeecCCCCceEEeecCCCCeEEEEE
Q 009715 416 RGPL-GGSPTFSTGSQSAHW---------------------DNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIF 473 (528)
Q Consensus 416 ~~~~-~~~~~~s~~~~~~~~---------------------d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~~ 473 (528)
.+.. ....+-+.++....| +..+.+...+-.+++|.+-.+..+..+.+|.+.+..+.+
T Consensus 324 ~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~ 403 (1113)
T KOG0644|consen 324 FENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDV 403 (1113)
T ss_pred ccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeee
Confidence 0000 000111111111111 111223334456778888899999999999999999999
Q ss_pred eCC---eEEEEECCCeEEEEeCCCCcccc---CCCccce-EEEccCCceEEEeee
Q 009715 474 TQE---SVLTVCREGHIKIWMRPGVAESQ---SSSSETV-LSTSSKDKPLLSSKV 521 (528)
Q Consensus 474 s~d---~l~t~s~Dg~i~iW~~~~~~~~~---~~~~~~v-l~~spd~~~l~s~~~ 521 (528)
+|- -.++++.||...|||+-.+.... .+|..-+ -+||+||..++....
T Consensus 404 Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~ 458 (1113)
T KOG0644|consen 404 HPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDD 458 (1113)
T ss_pred cCCCcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCCCceEecCCC
Confidence 993 27899999999999986554322 2344444 677888766655433
No 179
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.72 E-value=1.3e-15 Score=155.26 Aligned_cols=255 Identities=15% Similarity=0.123 Sum_probs=176.5
Q ss_pred CCCCCeEEEEecCCcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCC-cEEEEEeCCceEEEEEcCCC
Q 009715 165 AKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGD-GAFVVGHADGNLYVYEKSKD 243 (528)
Q Consensus 165 ~~~~~~l~~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~-~~l~tg~~dg~v~vwd~~~~ 243 (528)
-.+.+.|+.|..+|+|.+||++.....+ . .........|..+|+.+.|..+-. .-|++++.||.|..|+++.-
T Consensus 252 p~~p~ll~gG~y~GqV~lWD~~~~~~~~----~--s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l 325 (555)
T KOG1587|consen 252 PFDPNLLAGGCYNGQVVLWDLRKGSDTP----P--SGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDML 325 (555)
T ss_pred cCCcceEEeeccCceEEEEEccCCCCCC----C--cccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeecccc
Confidence 4467788899999999999998732111 1 111112234999999999976543 14999999999999987652
Q ss_pred CCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECC-CCCEEEEEeCCCcEEEEecCCc---e-----EE
Q 009715 244 GAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST-DGTYLATVGRDGYLRVFDYSKE---Q-----LI 314 (528)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp-dg~~l~s~~~dg~i~vwd~~~~---~-----~~ 314 (528)
..+.......... ......+ -...+++++|.+ +-..+++|+.+|.|..-+.... . ..
T Consensus 326 ~~P~e~~~~~~~~------------~~~~~~~--~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~ 391 (555)
T KOG1587|consen 326 SLPVEGLLLESKK------------HKGQQSS--KAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGH 391 (555)
T ss_pred ccchhhccccccc------------ccccccc--cccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccccccccc
Confidence 2211111100000 0000000 125788999998 7788999999999887443321 1 23
Q ss_pred eeecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC-CCeEEEEeecCCCCeEEEEEecCCCCCCCCCCccceeEEEEE
Q 009715 315 CGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSME-DRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGS 393 (528)
Q Consensus 315 ~~~~~~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~-~~~~~~~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s 393 (528)
..+..|.++|.++.++|-+..++..+.|..|+||... ...++..+..+...|++++|+|. - ...|++
T Consensus 392 ~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSpt-------r-----pavF~~ 459 (555)
T KOG1587|consen 392 STFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPT-------R-----PAVFAT 459 (555)
T ss_pred ccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCc-------C-----ceEEEE
Confidence 3455688999999999987765555559999999998 67888888888999999999993 1 158999
Q ss_pred EeCCCeEEEEEccCCeEEEEeecCCCCCCCeecCCCCCccCCceeeeecCCCCceeeecCCCCceEEeecCCCCeEEEEE
Q 009715 394 VGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIF 473 (528)
Q Consensus 394 ~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~~ 473 (528)
+..||.|.+||+...... |+.....+......+.|
T Consensus 460 ~d~~G~l~iWDLl~~~~~---------------------------------------------Pv~s~~~~~~~l~~~~~ 494 (555)
T KOG1587|consen 460 VDGDGNLDIWDLLQDDEE---------------------------------------------PVLSQKVCSPALTRVRW 494 (555)
T ss_pred EcCCCceehhhhhccccC---------------------------------------------Ccccccccccccceeec
Confidence 999999999999765432 22223334455677778
Q ss_pred eCCe--EEEEECCCeEEEEeCCCCc
Q 009715 474 TQES--VLTVCREGHIKIWMRPGVA 496 (528)
Q Consensus 474 s~d~--l~t~s~Dg~i~iW~~~~~~ 496 (528)
++.+ |+.|...|++.+|++....
T Consensus 495 s~~g~~lavGd~~G~~~~~~l~~~l 519 (555)
T KOG1587|consen 495 SPNGKLLAVGDANGTTHILKLSESL 519 (555)
T ss_pred CCCCcEEEEecCCCcEEEEEcCchh
Confidence 8865 8888899999999996543
No 180
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.71 E-value=8e-16 Score=151.71 Aligned_cols=267 Identities=15% Similarity=0.187 Sum_probs=187.5
Q ss_pred CCCCeEEEEecCCcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCC
Q 009715 166 KDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGA 245 (528)
Q Consensus 166 ~~~~~l~~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~ 245 (528)
|||..|+.+..+ .+++||... ........+|++.|.|++|+.||+ +|++|+.|..|.+|....++.
T Consensus 22 PDGsqL~lAAg~-rlliyD~nd------------G~llqtLKgHKDtVycVAys~dGk-rFASG~aDK~VI~W~~klEG~ 87 (1081)
T KOG1538|consen 22 PDGTQLILAAGS-RLLVYDTSD------------GTLLQPLKGHKDTVYCVAYAKDGK-RFASGSADKSVIIWTSKLEGI 87 (1081)
T ss_pred CCCceEEEecCC-EEEEEeCCC------------cccccccccccceEEEEEEccCCc-eeccCCCceeEEEecccccce
Confidence 777777665544 677777765 112233345999999999999999 999999999999999765432
Q ss_pred CCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCCCCEEEEEeCCCcEEEEecCCceEEeeecccCCCeE
Q 009715 246 GDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALL 325 (528)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~ 325 (528)
. -..|...|.|+.|+|-...|++++.. ..-+|..+.... ...+ ....+.
T Consensus 88 L----------------------------kYSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V-~K~k-ss~R~~ 136 (1081)
T KOG1538|consen 88 L----------------------------KYSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSV-SKHK-SSSRII 136 (1081)
T ss_pred e----------------------------eeccCCeeeEeecCchHHHhhhcchh-hccccChhhhhH-Hhhh-hheeEE
Confidence 1 12367999999999988899998764 467888764332 2233 346788
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEee---cCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEE
Q 009715 326 CCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGE---GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLL 402 (528)
Q Consensus 326 ~l~~sp~g~~l~sg~~dg~v~vwd~~~~~~~~~~~---~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~l 402 (528)
+++|..||++++.|-.||+|.|-+-. ++....++ |..++|.+++|+|. +.+..+ ..++......++.+
T Consensus 137 ~CsWtnDGqylalG~~nGTIsiRNk~-gEek~~I~Rpgg~Nspiwsi~~~p~-sg~G~~-------di~aV~DW~qTLSF 207 (1081)
T KOG1538|consen 137 CCSWTNDGQYLALGMFNGTISIRNKN-GEEKVKIERPGGSNSPIWSICWNPS-SGEGRN-------DILAVADWGQTLSF 207 (1081)
T ss_pred EeeecCCCcEEEEeccCceEEeecCC-CCcceEEeCCCCCCCCceEEEecCC-CCCCcc-------ceEEEEeccceeEE
Confidence 99999999999999999999988643 44333333 47789999999993 111212 37888888889998
Q ss_pred EEccCCeEEEEeecCCCCCCCeecCCCCCccCCceeeeecCCCCceeeecCCCCceEEeecCCCCeEEEEEeCCe--EEE
Q 009715 403 WDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLT 480 (528)
Q Consensus 403 wd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~~s~d~--l~t 480 (528)
+.+.....-..-.......++.+.++| ..+.+|.-++.+.++.- .+-.+.++......|+.++..|++ ++.
T Consensus 208 y~LsG~~Igk~r~L~FdP~CisYf~NG------Ey~LiGGsdk~L~~fTR-~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~ 280 (1081)
T KOG1538|consen 208 YQLSGKQIGKDRALNFDPCCISYFTNG------EYILLGGSDKQLSLFTR-DGVRLGTVGEQDSWIWTVQAKPNSQYVVV 280 (1081)
T ss_pred EEecceeecccccCCCCchhheeccCC------cEEEEccCCCceEEEee-cCeEEeeccccceeEEEEEEccCCceEEE
Confidence 887654332222222233344444444 45567777776666643 333444555567789999999974 999
Q ss_pred EECCCeEEEEeCC
Q 009715 481 VCREGHIKIWMRP 493 (528)
Q Consensus 481 ~s~Dg~i~iW~~~ 493 (528)
||.||+|--+++-
T Consensus 281 GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 281 GCQDGTIACYNLI 293 (1081)
T ss_pred EEccCeeehhhhH
Confidence 9999999999863
No 181
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.71 E-value=2.4e-16 Score=139.45 Aligned_cols=262 Identities=15% Similarity=0.097 Sum_probs=174.8
Q ss_pred eccCCCCCCCccccCCcccCCcccCCCCCCcceeeeCCCccEEEEeCC--CcEEEEeCCCCCCC----CCCCCeEEEEec
Q 009715 103 LGFGGGNGGSKSISGSSRIGSLGASSSSTSMTNTNFDGKGTYIIFNVG--DAIFISDLNSQDKD----AKDGHDLLIGLN 176 (528)
Q Consensus 103 ~sf~gh~~~v~~v~~s~~~~~~~~s~s~~s~~~~~~~~~g~~~~~~~~--~~i~v~~~~~~~~~----~~~~~~l~~g~~ 176 (528)
+.+++|.+.|+|+.|-. .+. +.++.. .|-+++|... +.+..+++...... +-.+..|.+-..
T Consensus 8 fvLRp~~~~v~s~~fqa-~~r-L~sg~~----------~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d~l~tqgR 75 (323)
T KOG0322|consen 8 FVLRPHSSSVTSVLFQA-NER-LMSGLS----------VGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPNDSLDTQGR 75 (323)
T ss_pred eEeccccchheehhhcc-chh-hhcccc----------cceEEEEEeecCccchhhhhhccceeeceeecCCcchhhcCC
Confidence 56779999999999965 222 444443 6777777654 34444553322111 223366677777
Q ss_pred CCcEEEEEccccc-------------------cccccceeeeeeeccC----------------------CcccCCceeE
Q 009715 177 SGDVYSVSLRQQL-------------------QDVGKKLVGAHHYNKD----------------------GSVNNSRCTS 215 (528)
Q Consensus 177 ~G~v~iwd~~~~~-------------------~~~~~~~~~~~~~~~~----------------------~~~h~~~v~~ 215 (528)
|+.+.+|++.... ....+..+....+..+ .....+.+.|
T Consensus 76 d~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc 155 (323)
T KOG0322|consen 76 DPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMC 155 (323)
T ss_pred CceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceee
Confidence 7888888775400 0000000000111111 1124567788
Q ss_pred EEEeeC-CCc-EEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCCCCE
Q 009715 216 VTWVPG-GDG-AFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTY 293 (528)
Q Consensus 216 l~~~p~-g~~-~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spdg~~ 293 (528)
..|..+ +.. +|++|.++|.|.+||+.++... ..++. ....+.....|..+|.++.|.+.-..
T Consensus 156 ~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~-~~~~~---------------~~kv~~~~ash~qpvlsldyas~~~r 219 (323)
T KOG0322|consen 156 QDKDHACGSTFLLLAGYESGHVVIWDLSTGDKI-IQLPQ---------------SSKVESPNASHKQPVLSLDYASSCDR 219 (323)
T ss_pred eeccccccceEEEEEeccCCeEEEEEccCCcee-ecccc---------------ccccccchhhccCcceeeeechhhcC
Confidence 776443 322 6677889999999999874221 11111 11233344567899999999986566
Q ss_pred EEEEeCCCcEEEEecCCc--eE--EeeecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCeEEE
Q 009715 294 LATVGRDGYLRVFDYSKE--QL--ICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGV 369 (528)
Q Consensus 294 l~s~~~dg~i~vwd~~~~--~~--~~~~~~~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~v 369 (528)
=++++.+..+..|+++.. .+ ...+.-..-.|..+..-||++.+|+++.|+.|+||+.++..++..++-|...|+++
T Consensus 220 Gisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~v 299 (323)
T KOG0322|consen 220 GISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAV 299 (323)
T ss_pred CcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEE
Confidence 678888888999998643 22 11122223468889999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEc
Q 009715 370 AFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDL 405 (528)
Q Consensus 370 ~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~ 405 (528)
+|+| |. .++++++.|++|.+|++
T Consensus 300 Afsp-------d~------~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 300 AFSP-------DC------ELMAAASKDARISLWKL 322 (323)
T ss_pred EeCC-------CC------chhhhccCCceEEeeec
Confidence 9999 85 59999999999999987
No 182
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=3e-15 Score=139.12 Aligned_cols=283 Identities=15% Similarity=0.115 Sum_probs=195.1
Q ss_pred eccCCcccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEe-ecCC
Q 009715 202 YNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWH-ICQG 280 (528)
Q Consensus 202 ~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~ 280 (528)
+.++...|.+.|++|.|+.+++ +|++|+.|..+++|++..-- .... -+|+.... .|..
T Consensus 48 ~qKD~~~H~GCiNAlqFS~N~~-~L~SGGDD~~~~~W~~de~~--~~k~------------------~KPI~~~~~~H~S 106 (609)
T KOG4227|consen 48 CQKDVREHTGCINALQFSHNDR-FLASGGDDMHGRVWNVDELM--VRKT------------------PKPIGVMEHPHRS 106 (609)
T ss_pred hhhhhhhhccccceeeeccCCe-EEeecCCcceeeeechHHHH--hhcC------------------CCCceeccCcccc
Confidence 4455567999999999999998 99999999999999986411 0000 12333332 3558
Q ss_pred CeEEEEECCCCCEEEEEeCCCcEEEEecCCceEEeeecc--cCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe-EEE
Q 009715 281 SINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKS--YYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRK-VVA 357 (528)
Q Consensus 281 ~v~~l~~spdg~~l~s~~~dg~i~vwd~~~~~~~~~~~~--~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~-~~~ 357 (528)
.|.|++|.....+|++|..+++|...|+++.+.+..+.. ..+.|..+..+|..+.|++.+.++.|.+||.+... ++.
T Consensus 107 NIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~ 186 (609)
T KOG4227|consen 107 NIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPIS 186 (609)
T ss_pred ceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCc
Confidence 899999999889999999999999999999998877642 23589999999998899999999999999998754 222
Q ss_pred E--eecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEE-EEee---cCCC----CCCCeecC
Q 009715 358 W--GEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIV-VPLR---RGPL----GGSPTFST 427 (528)
Q Consensus 358 ~--~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~-~~~~---~~~~----~~~~~~s~ 427 (528)
. +.........+.|+| ..+ .+|++.+..+-+.+||++....- .... ..+. -....|++
T Consensus 187 ~~~~AN~~~~F~t~~F~P-------~~P-----~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~ 254 (609)
T KOG4227|consen 187 LVLPANSGKNFYTAEFHP-------ETP-----ALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSP 254 (609)
T ss_pred eeeecCCCccceeeeecC-------CCc-----eeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCC
Confidence 1 222455678899998 331 68899999999999999876431 1111 1011 13455666
Q ss_pred CCCCccCCceeeeecCCCCceeeecCCCC-ceEEeecCC-------CCeEEEEEeCCe-EEEEECCCeEEEEeCCCCcc-
Q 009715 428 GSQSAHWDNVCPVGTLQPAPSMRDVPKLS-PLVAHRVHT-------EPLSGLIFTQES-VLTVCREGHIKIWMRPGVAE- 497 (528)
Q Consensus 428 ~~~~~~~d~~~~~g~~~~~~~~~d~~~~~-~~~~~~~h~-------~~V~~l~~s~d~-l~t~s~Dg~i~iW~~~~~~~- 497 (528)
.|. .+..-.-...+..||+-... ++..+ .|. ..+.++.|..|+ ++||+.+=.|.+|.++....
T Consensus 255 ~G~------Q~msiRR~~~P~~~D~~S~R~~V~k~-D~N~~GY~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP~~~ds 327 (609)
T KOG4227|consen 255 SGN------QFMSIRRGKCPLYFDFISQRCFVLKS-DHNPNGYCNIKTIKSMTFIDDYTVATGSDHWGIHIWKLPRANDS 327 (609)
T ss_pred CCC------eehhhhccCCCEEeeeecccceeEec-cCCCCcceeeeeeeeeeeecceeeeccCcccceEEEecCCCccc
Confidence 653 11111112234455554432 22222 222 257788888886 99999999999999875331
Q ss_pred ---ccC---------------------CCccce--EEEccCCceEEEeeeecc
Q 009715 498 ---SQS---------------------SSSETV--LSTSSKDKPLLSSKVVTS 524 (528)
Q Consensus 498 ---~~~---------------------~~~~~v--l~~spd~~~l~s~~~~gs 524 (528)
.+. +|..-+ +.|+|....|+++++..+
T Consensus 328 ~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~ 380 (609)
T KOG4227|consen 328 YGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENS 380 (609)
T ss_pred cCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhh
Confidence 111 222222 788999999999887643
No 183
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=2.7e-15 Score=139.48 Aligned_cols=282 Identities=15% Similarity=0.124 Sum_probs=189.4
Q ss_pred CCCeEEEEecCCcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCC
Q 009715 167 DGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAG 246 (528)
Q Consensus 167 ~~~~l~~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~ 246 (528)
++..|+.|+.|-.+.+|++.+.......++.. + -...|.+.|.|++|.-.+. .+++|..+++|.+.|+.+..
T Consensus 67 N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~---~--~~~~H~SNIF~L~F~~~N~-~~~SG~~~~~VI~HDiEt~q-- 138 (609)
T KOG4227|consen 67 NDRFLASGGDDMHGRVWNVDELMVRKTPKPIG---V--MEHPHRSNIFSLEFDLENR-FLYSGERWGTVIKHDIETKQ-- 138 (609)
T ss_pred CCeEEeecCCcceeeeechHHHHhhcCCCCce---e--ccCccccceEEEEEccCCe-eEecCCCcceeEeeecccce--
Confidence 35556666666777788877643222212111 1 1123779999999998888 99999999999999998632
Q ss_pred CCccccccccceeEEeccCCCCCCCeEEEe--ecCCCeEEEEECCCCCEEEEEeCCCcEEEEecCCce-E--EeeecccC
Q 009715 247 DSSFPVIKDQTQFSVAHPRYSKSNPIARWH--ICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQ-L--ICGGKSYY 321 (528)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~l~~spdg~~l~s~~~dg~i~vwd~~~~~-~--~~~~~~~~ 321 (528)
.+.++. ...+.|+.+..+|..+.|++.+.++.|.+||.+..+ . +.......
T Consensus 139 ------------------------si~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~ 194 (609)
T KOG4227|consen 139 ------------------------SIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSG 194 (609)
T ss_pred ------------------------eeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCC
Confidence 111111 123689999999988899999999999999997544 1 12223355
Q ss_pred CCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCe-EEEEe---ecC---CCCeEEEEEecCCCCCCCCCCccceeEEEEE
Q 009715 322 GALLCCAWSMD-GKYILTGGEDDLVQVWSMEDRK-VVAWG---EGH---NSWVSGVAFDSYWSQPNSDGTAETVMYRFGS 393 (528)
Q Consensus 322 ~~v~~l~~sp~-g~~l~sg~~dg~v~vwd~~~~~-~~~~~---~~h---~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s 393 (528)
.....+.|+|- ..+|++.+..+-+-+||.+... ++... .+. ...-.++.|+| +| ..|.+
T Consensus 195 ~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~-------~G------~Q~ms 261 (609)
T KOG4227|consen 195 KNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSP-------SG------NQFMS 261 (609)
T ss_pred ccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCC-------CC------Ceehh
Confidence 67888999995 5678889999999999998643 22221 111 12235788999 88 56777
Q ss_pred EeCCCeEEEEEccCCeE-EEEeecCCCCCCCeecCCCCCccCCceeeeecCCCCceeeecCCC-----------------
Q 009715 394 VGQDTRLLLWDLEMDEI-VVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKL----------------- 455 (528)
Q Consensus 394 ~s~D~~i~lwd~~~~~~-~~~~~~~~~~~~~~~s~~~~~~~~d~~~~~g~~~~~~~~~d~~~~----------------- 455 (528)
--.-..-.+||+-+.++ +..+.+.+....-..+-.+-+-.-|..+..|+.+-.+.+|.++..
T Consensus 262 iRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~ 341 (609)
T KOG4227|consen 262 IRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMP 341 (609)
T ss_pred hhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecceeeeccCcccceEEEecCCCccccCccccCcchhhCc
Confidence 76666777889877443 444443332221111111111122344778888888888887631
Q ss_pred ------CceEEeecCCCCeEEEEEeCC--eEEEEECCCeEEEEeCC
Q 009715 456 ------SPLVAHRVHTEPLSGLIFTQE--SVLTVCREGHIKIWMRP 493 (528)
Q Consensus 456 ------~~~~~~~~h~~~V~~l~~s~d--~l~t~s~Dg~i~iW~~~ 493 (528)
+.+..+++|..-+..|.|+|. .|++.+-...++||.-.
T Consensus 342 ~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 342 SEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred hhheecceeEEEecccccccceeecCCcceEeccchhhheeccccc
Confidence 245678899999999999996 37888899999999843
No 184
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.69 E-value=5.1e-14 Score=142.86 Aligned_cols=268 Identities=22% Similarity=0.366 Sum_probs=202.1
Q ss_pred ccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecC-CCeEEEE
Q 009715 208 VNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQ-GSINSIA 286 (528)
Q Consensus 208 ~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~ 286 (528)
.|...+.++.|.+.+. .++.++.|+.+.+|+..... ..+..+..+. ..+..+.
T Consensus 63 ~~~~~i~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~ 116 (466)
T COG2319 63 GHEDSITSIAFSPDGE-LLLSGSSDGTIKLWDLDNGE-------------------------KLIKSLEGLHDSSVSKLA 116 (466)
T ss_pred eccceEEEEEECCCCc-EEEEecCCCcEEEEEcCCCc-------------------------eeEEEEeccCCCceeeEE
Confidence 3888999999999999 88888899999999987532 1222333322 3566677
Q ss_pred E-CCCCC-EEEEEeC-CCcEEEEecCC-ceEEeeecccCCCeEEEEEcCCCCEEEEEeC-CCcEEEEECCCCeEEEEeec
Q 009715 287 F-STDGT-YLATVGR-DGYLRVFDYSK-EQLICGGKSYYGALLCCAWSMDGKYILTGGE-DDLVQVWSMEDRKVVAWGEG 361 (528)
Q Consensus 287 ~-spdg~-~l~s~~~-dg~i~vwd~~~-~~~~~~~~~~~~~v~~l~~sp~g~~l~sg~~-dg~v~vwd~~~~~~~~~~~~ 361 (528)
+ ++++. .++..+. |+.+++||+.. ......+..|...|..++|+|+++++++++. |+.+++|++..++.+..+.+
T Consensus 117 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (466)
T COG2319 117 LSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAG 196 (466)
T ss_pred EECCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeecc
Confidence 6 78777 5555444 99999999998 7778888889999999999999998888886 99999999999889999999
Q ss_pred CCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEE-EeecCCCCCCCeecCCCCCccCCceeee
Q 009715 362 HNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVV-PLRRGPLGGSPTFSTGSQSAHWDNVCPV 440 (528)
Q Consensus 362 h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~-~~~~~~~~~~~~~s~~~~~~~~d~~~~~ 440 (528)
|...|.+++|.| ++. ..+++++.|+.|++||...+.... .+..........|++++ ..+..
T Consensus 197 ~~~~v~~~~~~~-------~~~-----~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 258 (466)
T COG2319 197 HTDPVSSLAFSP-------DGG-----LLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDG------SLLAS 258 (466)
T ss_pred CCCceEEEEEcC-------Ccc-----eEEEEecCCCcEEEEECCCCcEEeeecCCCCcceeEeECCCC------CEEEE
Confidence 999999999998 771 256666999999999998777776 34433222211465555 34457
Q ss_pred ecCCCCceeeecCCCCc-eEEeecCCCCeEEEEEeCC--eEEEEECCCeEEEEeCCCCcccc----CCCccce--EEEcc
Q 009715 441 GTLQPAPSMRDVPKLSP-LVAHRVHTEPLSGLIFTQE--SVLTVCREGHIKIWMRPGVAESQ----SSSSETV--LSTSS 511 (528)
Q Consensus 441 g~~~~~~~~~d~~~~~~-~~~~~~h~~~V~~l~~s~d--~l~t~s~Dg~i~iW~~~~~~~~~----~~~~~~v--l~~sp 511 (528)
+..+..+++|+.+.... +..+..|...|.++.|.|+ .+++++.|+.+++|+........ ..|...+ +.+.+
T Consensus 259 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (466)
T COG2319 259 GSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSP 338 (466)
T ss_pred ecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECC
Confidence 88899999999987665 5555688999999999994 47778899899999887655222 1344434 55533
Q ss_pred CCceEEEe
Q 009715 512 KDKPLLSS 519 (528)
Q Consensus 512 d~~~l~s~ 519 (528)
++..++.+
T Consensus 339 ~~~~~~~~ 346 (466)
T COG2319 339 DGSLLVSG 346 (466)
T ss_pred CCCEEEEe
Confidence 43455444
No 185
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.69 E-value=1.5e-15 Score=146.55 Aligned_cols=244 Identities=15% Similarity=0.227 Sum_probs=161.5
Q ss_pred cCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccc----------------eeEEeccC------C
Q 009715 209 NNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQT----------------QFSVAHPR------Y 266 (528)
Q Consensus 209 h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~----------------~~~~~~~~------~ 266 (528)
|...|.|+.|..+.. .+.+++.+-.+.-|++.++......++.-.-+. .+.+.... .
T Consensus 13 ~~e~vc~v~w~~~ee-i~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il~ 91 (737)
T KOG1524|consen 13 NSEKVCCVDWSSNEE-IYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVILN 91 (737)
T ss_pred cceeEEeecccccce-EEEeccCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEec
Confidence 666778999998887 666666655556666655433222222111000 01111000 0
Q ss_pred CCCCCeEEEeecCCCeEEEEECCCCCEEEEEeCCCcEEEEecCCceEEeeecccCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 009715 267 SKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQ 346 (528)
Q Consensus 267 ~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~sg~~dg~v~ 346 (528)
...+.-+...+|.++|.+-.|+|||.-|++++.||.|++|.-. |.+...+.....+|.|++|.|+..-++-+. .+.+.
T Consensus 92 k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrs-GMLRStl~Q~~~~v~c~~W~p~S~~vl~c~-g~h~~ 169 (737)
T KOG1524|consen 92 KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRS-GMLRSTVVQNEESIRCARWAPNSNSIVFCQ-GGHIS 169 (737)
T ss_pred ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEecc-chHHHHHhhcCceeEEEEECCCCCceEEec-CCeEE
Confidence 1111223345699999999999999999999999999999854 666666666678899999999988766654 45677
Q ss_pred EEECCCCeEEEEeecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEEEeecCCCCCCCeec
Q 009715 347 VWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFS 426 (528)
Q Consensus 347 vwd~~~~~~~~~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~s 426 (528)
|=.+.....+-..++|.+-|.++.|++ .. .++++|++|-..++||-.....
T Consensus 170 IKpL~~n~k~i~WkAHDGiiL~~~W~~-------~s------~lI~sgGED~kfKvWD~~G~~L---------------- 220 (737)
T KOG1524|consen 170 IKPLAANSKIIRWRAHDGLVLSLSWST-------QS------NIIASGGEDFRFKIWDAQGANL---------------- 220 (737)
T ss_pred EeecccccceeEEeccCcEEEEeecCc-------cc------cceeecCCceeEEeecccCccc----------------
Confidence 777776666667788999999999998 55 6999999999999999643222
Q ss_pred CCCCCccCCceeeeecCCCCceeeecCCCCceEEeecCCCCeEEEEEeCCeEEEEECCCeEEEEeCCCCccccCCCccce
Q 009715 427 TGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQESVLTVCREGHIKIWMRPGVAESQSSSSETV 506 (528)
Q Consensus 427 ~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~~s~d~l~t~s~Dg~i~iW~~~~~~~~~~~~~~~v 506 (528)
..-..|+-+|++++|.||.++..+.-.++| ......+.|
T Consensus 221 --------------------------------f~S~~~ey~ITSva~npd~~~~v~S~nt~R---------~~~p~~GSi 259 (737)
T KOG1524|consen 221 --------------------------------FTSAAEEYAITSVAFNPEKDYLLWSYNTAR---------FSSPRVGSI 259 (737)
T ss_pred --------------------------------ccCChhccceeeeeeccccceeeeeeeeee---------ecCCCccce
Confidence 222356777777777777533333223444 122233445
Q ss_pred --EEEccCCceEEEeeeeccc
Q 009715 507 --LSTSSKDKPLLSSKVVTSS 525 (528)
Q Consensus 507 --l~~spd~~~l~s~~~~gs~ 525 (528)
+++|+||..++.|+..|.+
T Consensus 260 fnlsWS~DGTQ~a~gt~~G~v 280 (737)
T KOG1524|consen 260 FNLSWSADGTQATCGTSTGQL 280 (737)
T ss_pred EEEEEcCCCceeeccccCceE
Confidence 6777777777777666544
No 186
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.67 E-value=5.1e-15 Score=132.83 Aligned_cols=194 Identities=21% Similarity=0.240 Sum_probs=143.0
Q ss_pred cCCcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccccccc
Q 009715 176 NSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKD 255 (528)
Q Consensus 176 ~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~ 255 (528)
.+..+++|.+..... .-.+...+..++ ...+..++++..|+.-..+++.+++-|-+..|||++++..
T Consensus 119 s~D~LRlWri~~ee~--~~~~~~~L~~~k-ns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~---------- 185 (364)
T KOG0290|consen 119 SSDFLRLWRIGDEES--RVELQSVLNNNK-NSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVS---------- 185 (364)
T ss_pred ccCeEEEEeccCcCC--ceehhhhhccCc-ccccCCcccccccccCCcceeEeecccCeEEEEEEeeccc----------
Confidence 334788998764210 001111111222 2237789999999988888999999999999999987311
Q ss_pred cceeEEeccCCCCCCCeEEEeecCCCeEEEEECCCC-CEEEEEeCCCcEEEEecCCceEEeeec---ccCCCeEEEEEcC
Q 009715 256 QTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDG-TYLATVGRDGYLRVFDYSKEQLICGGK---SYYGALLCCAWSM 331 (528)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spdg-~~l~s~~~dg~i~vwd~~~~~~~~~~~---~~~~~v~~l~~sp 331 (528)
...-..+-+|..+|..|+|...+ ..+|+++.||.+|+||++..+.-..+. .-..+...++|++
T Consensus 186 -------------~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnk 252 (364)
T KOG0290|consen 186 -------------GTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNK 252 (364)
T ss_pred -------------cceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCc
Confidence 01123345688999999999854 579999999999999998665433322 2246788999998
Q ss_pred -CCCEEEEEeC-CCcEEEEECCC-CeEEEEeecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccC
Q 009715 332 -DGKYILTGGE-DDLVQVWSMED-RKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEM 407 (528)
Q Consensus 332 -~g~~l~sg~~-dg~v~vwd~~~-~~~~~~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~ 407 (528)
|.+++|+-.. ...|.|.|++. ..++..+++|.+.|++++|.|+ .. ..|.+++.|.++.+||+.+
T Consensus 253 qDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPh------S~------~hictaGDD~qaliWDl~q 319 (364)
T KOG0290|consen 253 QDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPH------SS------SHICTAGDDCQALIWDLQQ 319 (364)
T ss_pred CCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCC------CC------ceeeecCCcceEEEEeccc
Confidence 5668887544 45799999997 4678999999999999999994 33 6899999999999999875
No 187
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.67 E-value=1.7e-14 Score=135.09 Aligned_cols=187 Identities=15% Similarity=0.204 Sum_probs=138.4
Q ss_pred EEeCCCcEEEEeCCCCCCCCCCCCeEEEEecCCcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcE
Q 009715 146 IFNVGDAIFISDLNSQDKDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGA 225 (528)
Q Consensus 146 ~~~~~~~i~v~~~~~~~~~~~~~~~l~~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~ 225 (528)
.|-....++..++... ..+.|++|+.|.+|++|-+.......+. ....+......|...|+++.|+|+|+ +
T Consensus 9 ~wH~~~pv~s~dfq~n-----~~~~laT~G~D~~iriW~v~r~~~~~~~---~~V~y~s~Ls~H~~aVN~vRf~p~ge-l 79 (434)
T KOG1009|consen 9 SWHDHEPVYSVDFQKN-----SLNKLATAGGDKDIRIWKVNRSEPGGGD---MKVEYLSSLSRHTRAVNVVRFSPDGE-L 79 (434)
T ss_pred EecCCCceEEEEeccC-----cccceecccCccceeeeeeeecCCCCCc---eeEEEeecccCCcceeEEEEEcCCcC-e
Confidence 3444556677777644 2338999999999999988762211111 23445555666999999999999999 9
Q ss_pred EEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCCCCEEEEEeCCCcEEE
Q 009715 226 FVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRV 305 (528)
Q Consensus 226 l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~~~dg~i~v 305 (528)
|++|+.+|.|.+|....... +..-... ..........+.+.+|...|+.++|+||+.++++++.|..+++
T Consensus 80 LASg~D~g~v~lWk~~~~~~----~~~d~e~------~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l 149 (434)
T KOG1009|consen 80 LASGGDGGEVFLWKQGDVRI----FDADTEA------DLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRL 149 (434)
T ss_pred eeecCCCceEEEEEecCcCC----ccccchh------hhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEE
Confidence 99999999999998763110 0000000 0000112334566779999999999999999999999999999
Q ss_pred EecCCceEEeeecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 009715 306 FDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSME 351 (528)
Q Consensus 306 wd~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~ 351 (528)
||+..|+.+..+..|...+..++|.|-++++++-+.|...+++++.
T Consensus 150 ~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~ 195 (434)
T KOG1009|consen 150 WDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAK 195 (434)
T ss_pred EEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeee
Confidence 9999999999999999999999999999888888877766655543
No 188
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.67 E-value=3.4e-15 Score=144.10 Aligned_cols=165 Identities=20% Similarity=0.334 Sum_probs=132.2
Q ss_pred CCCCeEEEEecCCcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCC
Q 009715 166 KDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGA 245 (528)
Q Consensus 166 ~~~~~l~~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~ 245 (528)
.....++++++||.+.+.+-.. +..+....|.+.|.|-.|+|+|. -|+++++||.|++|... |.
T Consensus 73 ~~~d~~~i~s~DGkf~il~k~~-------------rVE~sv~AH~~A~~~gRW~~dGt-gLlt~GEDG~iKiWSrs--GM 136 (737)
T KOG1524|consen 73 KGSDTLLICSNDGRFVILNKSA-------------RVERSISAHAAAISSGRWSPDGA-GLLTAGEDGVIKIWSRS--GM 136 (737)
T ss_pred CCcceEEEEcCCceEEEecccc-------------hhhhhhhhhhhhhhhcccCCCCc-eeeeecCCceEEEEecc--ch
Confidence 3456789999999999876433 12223335999999999999999 79999999999999854 22
Q ss_pred CCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCCCCEEEEEeCCCcEEEEecCCceEEeeecccCCCeE
Q 009715 246 GDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALL 325 (528)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~ 325 (528)
....+. ....+|+|++|.|+.+.++.+.. +.+.|=.+.....+...+.|.+-|.
T Consensus 137 LRStl~-------------------------Q~~~~v~c~~W~p~S~~vl~c~g-~h~~IKpL~~n~k~i~WkAHDGiiL 190 (737)
T KOG1524|consen 137 LRSTVV-------------------------QNEESIRCARWAPNSNSIVFCQG-GHISIKPLAANSKIIRWRAHDGLVL 190 (737)
T ss_pred HHHHHh-------------------------hcCceeEEEEECCCCCceEEecC-CeEEEeecccccceeEEeccCcEEE
Confidence 111110 01368999999998887777644 5678778876666777889999999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCeEEEEEec
Q 009715 326 CCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDS 373 (528)
Q Consensus 326 ~l~~sp~g~~l~sg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~v~f~p 373 (528)
++.|++...++++|++|-..+|||-. |..+..-..|+-+|++++|.|
T Consensus 191 ~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~np 237 (737)
T KOG1524|consen 191 SLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAFNP 237 (737)
T ss_pred EeecCccccceeecCCceeEEeeccc-CcccccCChhccceeeeeecc
Confidence 99999999999999999999999964 777877788999999999999
No 189
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=1.4e-15 Score=145.32 Aligned_cols=293 Identities=14% Similarity=0.152 Sum_probs=208.7
Q ss_pred eccCCCCCCCccccCCcccCCcccCCCCCCcceeeeCCCccEEEEeCCCcEEEEeCCCCCCC---------CCCCCeEEE
Q 009715 103 LGFGGGNGGSKSISGSSRIGSLGASSSSTSMTNTNFDGKGTYIIFNVGDAIFISDLNSQDKD---------AKDGHDLLI 173 (528)
Q Consensus 103 ~sf~gh~~~v~~v~~s~~~~~~~~s~s~~s~~~~~~~~~g~~~~~~~~~~i~v~~~~~~~~~---------~~~~~~l~~ 173 (528)
..+.+|.|.|+.|+|.. .|.+++|++. +-++++|+....-....+..+... ..+...++.
T Consensus 136 ~kL~~H~GcVntV~FN~-~Gd~l~SgSD----------D~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~ 204 (559)
T KOG1334|consen 136 KKLNKHKGCVNTVHFNQ-RGDVLASGSD----------DLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVT 204 (559)
T ss_pred hcccCCCCccceeeecc-cCceeeccCc----------cceEEeehhhccCcccccccccccchhhhhccCCCCCcCcee
Confidence 34679999999999998 7788888885 788888888776666666655433 567778899
Q ss_pred EecCCcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccccc
Q 009715 174 GLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVI 253 (528)
Q Consensus 174 g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~ 253 (528)
.+.||+|++-.+... .......+ ...|.++|..++.-|+..+.|.+++.|+.|+-+|++.+....... ..
T Consensus 205 ~s~dgqvr~s~i~~t-----~~~e~t~r----l~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~-cr 274 (559)
T KOG1334|consen 205 SSRDGQVRVSEILET-----GYVENTKR----LAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFV-CR 274 (559)
T ss_pred ccccCceeeeeeccc-----cceeccee----cccccCccceeeecCCCCCcccccccccceeeeeeccCCccceee-ee
Confidence 999999998766531 11111111 123999999999999999899999999999999998743322111 11
Q ss_pred cccceeEEeccCCCCCCCeEEEeecCCCeEEEEECC-CCCEEEEEeCCCcEEEEecCCceE------Eeeec------cc
Q 009715 254 KDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST-DGTYLATVGRDGYLRVFDYSKEQL------ICGGK------SY 320 (528)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp-dg~~l~s~~~dg~i~vwd~~~~~~------~~~~~------~~ 320 (528)
... .+. .-..+.++..| +..++++++.|-.+++||.+.-.. +..+. ..
T Consensus 275 ~~~-------------~~~------~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~ 335 (559)
T KOG1334|consen 275 EAD-------------EKE------RVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDD 335 (559)
T ss_pred ccC-------------Ccc------ceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccC
Confidence 100 000 01456788888 566899999999999999864221 12221 12
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC--C----------eEEE-EeecCCC--CeEEEEEecCCCCCCCCCCcc
Q 009715 321 YGALLCCAWSMDGKYILTGGEDDLVQVWSMED--R----------KVVA-WGEGHNS--WVSGVAFDSYWSQPNSDGTAE 385 (528)
Q Consensus 321 ~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~--~----------~~~~-~~~~h~~--~V~~v~f~p~~~~~~~dg~~~ 385 (528)
.-.|+|++++.++.-|++...|-.|++|.-.- + ..+. .++||.. .|..+-|-- + ..
T Consensus 336 ~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfG---P---rs--- 406 (559)
T KOG1334|consen 336 PVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFG---P---RS--- 406 (559)
T ss_pred cccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeecc---C---cc---
Confidence 34689999998887778888899999995322 2 1222 3678865 577787732 0 33
Q ss_pred ceeEEEEEEeCCCeEEEEEccCCeEEEEeecCCCCCCCeecCCCCCccCCceeeeecCCCCceeeecCCCCceEEeecCC
Q 009715 386 TVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHT 465 (528)
Q Consensus 386 ~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~ 465 (528)
.++++|+.-|.|.|||-.+++.++-++. -.
T Consensus 407 ---EyVvSGSDCGhIFiW~K~t~eii~~Meg-----------------------------------------------Dr 436 (559)
T KOG1334|consen 407 ---EYVVSGSDCGHIFIWDKKTGEIIRFMEG-----------------------------------------------DR 436 (559)
T ss_pred ---ceEEecCccceEEEEecchhHHHHHhhc-----------------------------------------------cc
Confidence 5899999999999999888887655443 23
Q ss_pred CCeEEEEEeCCe--EEEEECCCeEEEEeCCC
Q 009715 466 EPLSGLIFTQES--VLTVCREGHIKIWMRPG 494 (528)
Q Consensus 466 ~~V~~l~~s~d~--l~t~s~Dg~i~iW~~~~ 494 (528)
..|+||.-+|-. |+++|.|..||||...+
T Consensus 437 ~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~ 467 (559)
T KOG1334|consen 437 HVVNCLEPHPHLPVLASSGIDHDVKIWTPLT 467 (559)
T ss_pred ceEeccCCCCCCchhhccCCccceeeecCCc
Confidence 378999999964 99999999999999744
No 190
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.65 E-value=3.3e-15 Score=132.38 Aligned_cols=236 Identities=17% Similarity=0.278 Sum_probs=163.3
Q ss_pred cCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEe-ecCCCeEEEEE
Q 009715 209 NNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWH-ICQGSINSIAF 287 (528)
Q Consensus 209 h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~ 287 (528)
|.+.|+++.|..++. |.+|..-|.|++|++.+. .++..|+ .|...|+.+.-
T Consensus 13 ~~~~v~s~~fqa~~r--L~sg~~~G~V~~w~lqt~--------------------------r~~~~~r~~g~~~it~lq~ 64 (323)
T KOG0322|consen 13 HSSSVTSVLFQANER--LMSGLSVGIVKMWVLQTE--------------------------RDLPLIRLFGRLFITNLQS 64 (323)
T ss_pred ccchheehhhccchh--hhcccccceEEEEEeecC--------------------------ccchhhhhhccceeeceee
Confidence 889999999988875 999999999999999863 2222333 23445555555
Q ss_pred CCCCCEEEEEeCCCcEEEEecCCceE-------------------------------------------------Eeee-
Q 009715 288 STDGTYLATVGRDGYLRVFDYSKEQL-------------------------------------------------ICGG- 317 (528)
Q Consensus 288 spdg~~l~s~~~dg~i~vwd~~~~~~-------------------------------------------------~~~~- 317 (528)
-|+ ..|.+-+.|+.+.+|++.-+.. ++..
T Consensus 65 ~p~-d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~d 143 (323)
T KOG0322|consen 65 IPN-DSLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIAD 143 (323)
T ss_pred cCC-cchhhcCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccC
Confidence 554 3455555666666666543110 0000
Q ss_pred ---cccCCCeEEEEEcC-CCC--EEEEEeCCCcEEEEECCCCeE----------EEEeecCCCCeEEEEEecCCCCCCCC
Q 009715 318 ---KSYYGALLCCAWSM-DGK--YILTGGEDDLVQVWSMEDRKV----------VAWGEGHNSWVSGVAFDSYWSQPNSD 381 (528)
Q Consensus 318 ---~~~~~~v~~l~~sp-~g~--~l~sg~~dg~v~vwd~~~~~~----------~~~~~~h~~~V~~v~f~p~~~~~~~d 381 (528)
.+..+.+.|..|.. ++. +++.|.++|.|.+||+.++.. +.....|..+|.++.|.+ -
T Consensus 144 d~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas-------~ 216 (323)
T KOG0322|consen 144 DSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYAS-------S 216 (323)
T ss_pred chhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeech-------h
Confidence 01224456666533 333 567888999999999998733 233346899999999987 2
Q ss_pred CCccceeEEEEEEeCCCeEEEEEccCCe--EE----EEeecCCCCCCCeecCCCCCccCCceeeeecCCCCceeeecCCC
Q 009715 382 GTAETVMYRFGSVGQDTRLLLWDLEMDE--IV----VPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKL 455 (528)
Q Consensus 382 g~~~~~~~~l~s~s~D~~i~lwd~~~~~--~~----~~~~~~~~~~~~~~s~~~~~~~~d~~~~~g~~~~~~~~~d~~~~ 455 (528)
- ..=++++.+..+.+|.+.... +. ..++ .+.+..+.+-+++ ..+++...|..+++|.-++.
T Consensus 217 ~------~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lk-npGv~gvrIRpD~------KIlATAGWD~RiRVyswrtl 283 (323)
T KOG0322|consen 217 C------DRGISGGADDKLVMYSLNHSTGSLQIRKEITLK-NPGVSGVRIRPDG------KILATAGWDHRIRVYSWRTL 283 (323)
T ss_pred h------cCCcCCCccccceeeeeccccCcccccceEEec-CCCccceEEccCC------cEEeecccCCcEEEEEeccC
Confidence 2 244678888899999886542 11 1122 2455666776666 44455666778899999999
Q ss_pred CceEEeecCCCCeEEEEEeCCe--EEEEECCCeEEEEeCC
Q 009715 456 SPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWMRP 493 (528)
Q Consensus 456 ~~~~~~~~h~~~V~~l~~s~d~--l~t~s~Dg~i~iW~~~ 493 (528)
+|+..+.-|.+.|.+++|+|+. ++.++.|+.|-+|++.
T Consensus 284 ~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkLY 323 (323)
T KOG0322|consen 284 NPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKLY 323 (323)
T ss_pred CchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeecC
Confidence 9999999999999999999984 8999999999999873
No 191
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.65 E-value=2.5e-14 Score=148.15 Aligned_cols=283 Identities=13% Similarity=0.159 Sum_probs=181.7
Q ss_pred CcceeeeCCCccEEEEeCCCcEEEEeCCCCCCC-----------CCCCCeEEEEecCCcEEEEEccccccccccceeeee
Q 009715 132 SMTNTNFDGKGTYIIFNVGDAIFISDLNSQDKD-----------AKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAH 200 (528)
Q Consensus 132 s~~~~~~~~~g~~~~~~~~~~i~v~~~~~~~~~-----------~~~~~~l~~g~~~G~v~iwd~~~~~~~~~~~~~~~~ 200 (528)
.+.+++.+...++++|+..++-.+..+..+... ..|...|++|+.||.|+||+--...+.+. +++...
T Consensus 1076 ~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~-eLVTaw 1154 (1387)
T KOG1517|consen 1076 EPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKP-ELVTAW 1154 (1387)
T ss_pred CceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCCc-eeEEee
Confidence 334555566666777776665444333333222 55677889999999999997544222221 222221
Q ss_pred eeccC-CcccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecC
Q 009715 201 HYNKD-GSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQ 279 (528)
Q Consensus 201 ~~~~~-~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 279 (528)
.-..+ ..+..+.=.-+.|..+.. +|++++.-..|+|||..++... ..++.. -.
T Consensus 1155 ~~Ls~~~~~~r~~~~v~dWqQ~~G-~Ll~tGd~r~IRIWDa~~E~~~-~diP~~------------------------s~ 1208 (1387)
T KOG1517|consen 1155 SSLSDQLPGARGTGLVVDWQQQSG-HLLVTGDVRSIRIWDAHKEQVV-ADIPYG------------------------SS 1208 (1387)
T ss_pred ccccccCccCCCCCeeeehhhhCC-eEEecCCeeEEEEEecccceeE-eecccC------------------------CC
Confidence 11111 111111124467877766 6667666789999999863221 111110 12
Q ss_pred CCeEEEEECC-CCCEEEEEeCCCcEEEEecCCc---eEEeeecccCCC--eEEEEEcCCCC-EEEEEeCCCcEEEEECCC
Q 009715 280 GSINSIAFST-DGTYLATVGRDGYLRVFDYSKE---QLICGGKSYYGA--LLCCAWSMDGK-YILTGGEDDLVQVWSMED 352 (528)
Q Consensus 280 ~~v~~l~~sp-dg~~l~s~~~dg~i~vwd~~~~---~~~~~~~~~~~~--v~~l~~sp~g~-~l~sg~~dg~v~vwd~~~ 352 (528)
..|+++.-+. .|+.|+.|..||.|++||.+.. ..+...+.|... |..+.+.+.|- .|++|+.||.|++||++.
T Consensus 1209 t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~ 1288 (1387)
T KOG1517|consen 1209 TLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRM 1288 (1387)
T ss_pred ccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEeccc
Confidence 4566665544 5799999999999999998754 346677788876 99999988765 499999999999999997
Q ss_pred Ce--EEEEeecCC---CCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEEEeecCCCCCCCeecC
Q 009715 353 RK--VVAWGEGHN---SWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFST 427 (528)
Q Consensus 353 ~~--~~~~~~~h~---~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~s~ 427 (528)
.. ....+..|. +..+++..++ +. ..+++|+. +.|+||++...+. ..++.. ..|
T Consensus 1289 ~~~e~~~~iv~~~~yGs~lTal~VH~-------ha------piiAsGs~-q~ikIy~~~G~~l-~~~k~n-----~~F-- 1346 (1387)
T KOG1517|consen 1289 SSKETFLTIVAHWEYGSALTALTVHE-------HA------PIIASGSA-QLIKIYSLSGEQL-NIIKYN-----PGF-- 1346 (1387)
T ss_pred CcccccceeeeccccCccceeeeecc-------CC------CeeeecCc-ceEEEEecChhhh-cccccC-----ccc--
Confidence 42 222233333 3589999998 55 57888887 9999999875442 222210 000
Q ss_pred CCCCccCCceeeeecCCCCceeeecCCCCceEEeecCCCCeEEEEEeCCe--EEEEECCCeEEEEeCCCCc
Q 009715 428 GSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWMRPGVA 496 (528)
Q Consensus 428 ~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~~s~d~--l~t~s~Dg~i~iW~~~~~~ 496 (528)
+....+.+.+++|+|.. |+.|+.|.+|.||..+...
T Consensus 1347 ---------------------------------~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1347 ---------------------------------MGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred ---------------------------------ccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 01124556999999974 8888999999999876543
No 192
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.65 E-value=1.2e-14 Score=132.21 Aligned_cols=222 Identities=12% Similarity=0.178 Sum_probs=168.5
Q ss_pred cCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEEC
Q 009715 209 NNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFS 288 (528)
Q Consensus 209 h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 288 (528)
-..+|+|.+|++|+. .+|++.....|.||.....+ ..++.+.+..|...|++|+|+
T Consensus 9 ~~~pitchAwn~drt-~iAv~~~~~evhiy~~~~~~-----------------------~w~~~htls~Hd~~vtgvdWa 64 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRT-QIAVSPNNHEVHIYSMLGAD-----------------------LWEPAHTLSEHDKIVTGVDWA 64 (361)
T ss_pred ccCceeeeeecCCCc-eEEeccCCceEEEEEecCCC-----------------------CceeceehhhhCcceeEEeec
Confidence 345899999999999 89999999999999987522 145677788899999999999
Q ss_pred CCCCEEEEEeCCCcEEEEecC-Cc--eEEeeecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE----EEEeec
Q 009715 289 TDGTYLATVGRDGYLRVFDYS-KE--QLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKV----VAWGEG 361 (528)
Q Consensus 289 pdg~~l~s~~~dg~i~vwd~~-~~--~~~~~~~~~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~~----~~~~~~ 361 (528)
|..+.|++|+.|..-++|... .+ ++...+..+....++|.|+|.++.||+|+....|.||-++...- .+.-+.
T Consensus 65 p~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkP 144 (361)
T KOG1523|consen 65 PKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKP 144 (361)
T ss_pred CCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCc
Confidence 999999999999999999984 33 23344556888999999999999999999999999998875432 123346
Q ss_pred CCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEEEeecCCCCCCCeecCCCCCccCCceeeee
Q 009715 362 HNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVG 441 (528)
Q Consensus 362 h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~d~~~~~g 441 (528)
+.+.|+++.|+| ++ -+|++|+.|+.+|++..--.. +...+ + ..-|+..++.|
T Consensus 145 irStv~sldWhp-------nn------VLlaaGs~D~k~rVfSayIK~----Vdekp-----a------p~pWgsk~PFG 196 (361)
T KOG1523|consen 145 IRSTVTSLDWHP-------NN------VLLAAGSTDGKCRVFSAYIKG----VDEKP-----A------PTPWGSKMPFG 196 (361)
T ss_pred cccceeeeeccC-------Cc------ceecccccCcceeEEEEeeec----cccCC-----C------CCCCccCCcHH
Confidence 788999999999 77 689999999999999753221 11110 0 11233333333
Q ss_pred cCCCCceeeecCCCCceEEeecCCCCeEEEEEeCCe--EEEEECCCeEEEEeCCCCc
Q 009715 442 TLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWMRPGVA 496 (528)
Q Consensus 442 ~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~~s~d~--l~t~s~Dg~i~iW~~~~~~ 496 (528)
. .+..+....+.|..+.|+|++ |+-.+.|..+.+=|.....
T Consensus 197 ~--------------lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 197 Q--------------LMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred H--------------HHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence 2 222222346789999999975 9999999999999976553
No 193
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.64 E-value=1.7e-14 Score=131.24 Aligned_cols=199 Identities=20% Similarity=0.293 Sum_probs=157.6
Q ss_pred CCCCCeEEEEecCCcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCC
Q 009715 165 AKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDG 244 (528)
Q Consensus 165 ~~~~~~l~~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~ 244 (528)
.+|+..++++-++.+|.||...... ..+. .+ ....|...|++|.|+|..+ .|++++.|..-+||....++
T Consensus 19 n~drt~iAv~~~~~evhiy~~~~~~-----~w~~-~h---tls~Hd~~vtgvdWap~sn-rIvtcs~drnayVw~~~~~~ 88 (361)
T KOG1523|consen 19 NSDRTQIAVSPNNHEVHIYSMLGAD-----LWEP-AH---TLSEHDKIVTGVDWAPKSN-RIVTCSHDRNAYVWTQPSGG 88 (361)
T ss_pred cCCCceEEeccCCceEEEEEecCCC-----Ccee-ce---ehhhhCcceeEEeecCCCC-ceeEccCCCCccccccCCCC
Confidence 4788889999999999999876521 1111 11 1223999999999999998 89999999999999986543
Q ss_pred CCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCCCCEEEEEeCCCcEEEEecCCceEE----eeeccc
Q 009715 245 AGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLI----CGGKSY 320 (528)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~~~dg~i~vwd~~~~~~~----~~~~~~ 320 (528)
. ..+..++--+...++++.|+|.++.||+|+....|.||-++.+.-. +.-+.+
T Consensus 89 ~-----------------------WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPi 145 (361)
T KOG1523|consen 89 T-----------------------WKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPI 145 (361)
T ss_pred e-----------------------eccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCcc
Confidence 2 4555566667799999999999999999999999999999866543 223446
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEEC-----CC-------------CeEEEEeecCCCCeEEEEEecCCCCCCCCC
Q 009715 321 YGALLCCAWSMDGKYILTGGEDDLVQVWSM-----ED-------------RKVVAWGEGHNSWVSGVAFDSYWSQPNSDG 382 (528)
Q Consensus 321 ~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~-----~~-------------~~~~~~~~~h~~~V~~v~f~p~~~~~~~dg 382 (528)
...|.+++|+|++-+|+.|+.|+.++||.. ++ |+.+..+....++|..+.|+| +|
T Consensus 146 rStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~-------sG 218 (361)
T KOG1523|consen 146 RSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSP-------SG 218 (361)
T ss_pred ccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCC-------CC
Confidence 788999999999999999999999999964 11 233444445678999999999 99
Q ss_pred CccceeEEEEEEeCCCeEEEEEccCCe
Q 009715 383 TAETVMYRFGSVGQDTRLLLWDLEMDE 409 (528)
Q Consensus 383 ~~~~~~~~l~s~s~D~~i~lwd~~~~~ 409 (528)
.+|+-.+.|.++.+=|.....
T Consensus 219 ------~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 219 ------NRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred ------CEeeEecCCCceEEeecCCCc
Confidence 799999999999999877654
No 194
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=2.4e-13 Score=139.13 Aligned_cols=303 Identities=14% Similarity=0.156 Sum_probs=200.0
Q ss_pred CCCccEEEEeCCCcEEEEeCCCCCCC-------------------CCCCCeEEEEecCCcEEEEEccccccccccce-ee
Q 009715 139 DGKGTYIIFNVGDAIFISDLNSQDKD-------------------AKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKL-VG 198 (528)
Q Consensus 139 ~~~g~~~~~~~~~~i~v~~~~~~~~~-------------------~~~~~~l~~g~~~G~v~iwd~~~~~~~~~~~~-~~ 198 (528)
...|.+...-....+++|..+.+.+. +|.++++++|..||+|.+|.--.- ..... ..
T Consensus 169 ~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~---~~~~~t~t 245 (792)
T KOG1963|consen 169 NNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGS---SDDSETCT 245 (792)
T ss_pred cCCceEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccc---ccccccce
Confidence 34455555445556667766653322 999999999999999999963320 01111 11
Q ss_pred eeeeccCCcccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeec
Q 009715 199 AHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHIC 278 (528)
Q Consensus 199 ~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 278 (528)
..+ .|...|++++|+++|. +|++|+..|.+.+|.+.++++ .-+|..
T Consensus 246 ~lH------WH~~~V~~L~fS~~G~-~LlSGG~E~VLv~Wq~~T~~k--qfLPRL------------------------- 291 (792)
T KOG1963|consen 246 LLH------WHHDEVNSLSFSSDGA-YLLSGGREGVLVLWQLETGKK--QFLPRL------------------------- 291 (792)
T ss_pred EEE------ecccccceeEEecCCc-eEeecccceEEEEEeecCCCc--cccccc-------------------------
Confidence 122 3889999999999999 999999999999999987441 112211
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEEEecCCceEEeeecc-----------cCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 009715 279 QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKS-----------YYGALLCCAWSMDGKYILTGGEDDLVQV 347 (528)
Q Consensus 279 ~~~v~~l~~spdg~~l~s~~~dg~i~vwd~~~~~~~~~~~~-----------~~~~v~~l~~sp~g~~l~sg~~dg~v~v 347 (528)
.++|..+.++||+.+.+....|..|.+....+.+....+.+ ..+-.+.++++|..+.++-.+..+.|.+
T Consensus 292 gs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ 371 (792)
T KOG1963|consen 292 GSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQF 371 (792)
T ss_pred CCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEE
Confidence 37899999999999999999999999998865544333221 2344677889997778888889999999
Q ss_pred EECCCCeEEEEee-----cC------CCCeEEEEEecCCCCCCCCCCccceeEEEEEEe--------C--CCeEEEEEcc
Q 009715 348 WSMEDRKVVAWGE-----GH------NSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVG--------Q--DTRLLLWDLE 406 (528)
Q Consensus 348 wd~~~~~~~~~~~-----~h------~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s--------~--D~~i~lwd~~ 406 (528)
||+-+.+.+..++ .+ ...++.++.+. .| .+++|.- . .-.+++|-..
T Consensus 372 ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~-------~g------s~maT~E~~~d~~~~~~~e~~LKFW~~n 438 (792)
T KOG1963|consen 372 YDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSR-------FG------SWMATLEARIDKFNFFDGEVSLKFWQYN 438 (792)
T ss_pred EeccccceeeeEEEEeecccCCcceeEEeeeeehhhc-------cc------eEEEEeeeeehhhhccCceEEEEEEEEc
Confidence 9998876655543 12 23466777766 67 6777763 2 3357889765
Q ss_pred CCeE----EEEeecCCCCCC--CeecCCCCCccCCceeeeecCCCCceeeecCC----------CCceEEeecCCCCeEE
Q 009715 407 MDEI----VVPLRRGPLGGS--PTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPK----------LSPLVAHRVHTEPLSG 470 (528)
Q Consensus 407 ~~~~----~~~~~~~~~~~~--~~~s~~~~~~~~d~~~~~g~~~~~~~~~d~~~----------~~~~~~~~~h~~~V~~ 470 (528)
.... ...+..++.... ..+....+. ..+...+.++.+++|.... +.+...-.-|..++..
T Consensus 439 ~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs----~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a 514 (792)
T KOG1963|consen 439 PNSKTFILNTKINNPHGNAFVATIFLNPTRS----VRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITA 514 (792)
T ss_pred CCcceeEEEEEEecCCCceeEEEEEecCccc----ceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccc
Confidence 4332 222333222211 112111111 0333444555566665521 1122222247889999
Q ss_pred EEEeCCe-EEEEECCCeEEEEeCCCC
Q 009715 471 LIFTQES-VLTVCREGHIKIWMRPGV 495 (528)
Q Consensus 471 l~~s~d~-l~t~s~Dg~i~iW~~~~~ 495 (528)
++|+.|+ +++++.|++|.+||..+.
T Consensus 515 ~~fs~dGslla~s~~~~Itiwd~~~~ 540 (792)
T KOG1963|consen 515 LCFSQDGSLLAVSFDDTITIWDYDTK 540 (792)
T ss_pred hhhcCCCcEEEEecCCEEEEecCCCh
Confidence 9999998 999999999999998773
No 195
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.64 E-value=2.8e-13 Score=134.26 Aligned_cols=267 Identities=14% Similarity=0.151 Sum_probs=162.3
Q ss_pred EEEecCCcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEE-EeCCceEEEEEcCCCCCCCCcc
Q 009715 172 LIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVV-GHADGNLYVYEKSKDGAGDSSF 250 (528)
Q Consensus 172 ~~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~t-g~~dg~v~vwd~~~~~~~~~~~ 250 (528)
++...++.|++||+... + .+.....+. +.+....++++|+++ +|++ +..++.|.+|+++..+... .
T Consensus 6 ~~~~~~~~I~~~~~~~~----g-~l~~~~~~~-----~~~~~~~l~~spd~~-~lyv~~~~~~~i~~~~~~~~g~l~-~- 72 (330)
T PRK11028 6 IASPESQQIHVWNLNHE----G-ALTLLQVVD-----VPGQVQPMVISPDKR-HLYVGVRPEFRVLSYRIADDGALT-F- 72 (330)
T ss_pred EEcCCCCCEEEEEECCC----C-ceeeeeEEe-----cCCCCccEEECCCCC-EEEEEECCCCcEEEEEECCCCceE-E-
Confidence 34466889999999631 1 111111111 334577899999999 5555 4568899999987322110 0
Q ss_pred ccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCCCCEEEEEe-CCCcEEEEecCC-c---eEEeeecccCCCeE
Q 009715 251 PVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVG-RDGYLRVFDYSK-E---QLICGGKSYYGALL 325 (528)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~~-~dg~i~vwd~~~-~---~~~~~~~~~~~~v~ 325 (528)
+.... ..+....++|+|++++|++++ .++.|.+|++++ + +.+..+. +.....
T Consensus 73 ---------------------~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~ 129 (330)
T PRK11028 73 ---------------------AAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCH 129 (330)
T ss_pred ---------------------eeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCccc
Confidence 00000 123456899999999888876 478999999974 2 2222222 233467
Q ss_pred EEEEcCCCCEEEEEe-CCCcEEEEECCCCeEEE-------EeecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeC-
Q 009715 326 CCAWSMDGKYILTGG-EDDLVQVWSMEDRKVVA-------WGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQ- 396 (528)
Q Consensus 326 ~l~~sp~g~~l~sg~-~dg~v~vwd~~~~~~~~-------~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~- 396 (528)
+++++|+++++++++ .++.|.+||+++...+. ... .......++|+| || .+++++..
T Consensus 130 ~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~-~g~~p~~~~~~p-------dg------~~lyv~~~~ 195 (330)
T PRK11028 130 SANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTV-EGAGPRHMVFHP-------NQ------QYAYCVNEL 195 (330)
T ss_pred EeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecC-CCCCCceEEECC-------CC------CEEEEEecC
Confidence 789999999886554 57999999998633221 111 233467899999 98 56655554
Q ss_pred CCeEEEEEccC--C--eEEEEeecCCC-------CCCCeecCCCCCccCCceeeee-cCCCCceeeecCCCCceEEeecC
Q 009715 397 DTRLLLWDLEM--D--EIVVPLRRGPL-------GGSPTFSTGSQSAHWDNVCPVG-TLQPAPSMRDVPKLSPLVAHRVH 464 (528)
Q Consensus 397 D~~i~lwd~~~--~--~~~~~~~~~~~-------~~~~~~s~~~~~~~~d~~~~~g-~~~~~~~~~d~~~~~~~~~~~~h 464 (528)
+++|.+||+.. + +.+..+...+. ...+.+++++ ..+.+. .....+.+|++........+.+|
T Consensus 196 ~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg------~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~ 269 (330)
T PRK11028 196 NSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDG------RHLYACDRTASLISVFSVSEDGSVLSFEGH 269 (330)
T ss_pred CCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCC------CEEEEecCCCCeEEEEEEeCCCCeEEEeEE
Confidence 89999999973 3 23333332111 1125566665 233333 33567788887543322222222
Q ss_pred C---CCeEEEEEeCCe--EEEEE-CCCeEEEEeCCC
Q 009715 465 T---EPLSGLIFTQES--VLTVC-REGHIKIWMRPG 494 (528)
Q Consensus 465 ~---~~V~~l~~s~d~--l~t~s-~Dg~i~iW~~~~ 494 (528)
. .....+.|+||+ |+++. .+++|.+|++..
T Consensus 270 ~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 270 QPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDG 305 (330)
T ss_pred EeccccCCceEECCCCCEEEEEEccCCcEEEEEEcC
Confidence 1 234578999985 65555 589999998753
No 196
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.64 E-value=6.1e-14 Score=147.50 Aligned_cols=348 Identities=15% Similarity=0.142 Sum_probs=208.4
Q ss_pred CCceeeccCCCCCCCccccCCcccCCcccCCCCCCcceeeeCCCccEEEEeCCC---------cEEEEeCCCCCCC----
Q 009715 98 NGSRTLGFGGGNGGSKSISGSSRIGSLGASSSSTSMTNTNFDGKGTYIIFNVGD---------AIFISDLNSQDKD---- 164 (528)
Q Consensus 98 ~g~~~~sf~gh~~~v~~v~~s~~~~~~~~s~s~~s~~~~~~~~~g~~~~~~~~~---------~i~v~~~~~~~~~---- 164 (528)
.|.++..+.-|.+.|..++.++..+.+++|+|. ||.+.+|+..+ ....|+.......
T Consensus 1037 ~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~----------DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~ 1106 (1431)
T KOG1240|consen 1037 RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSD----------DGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTM 1106 (1431)
T ss_pred cceEeehhhhccccccceeecCCCCceEEEecC----------CceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEe
Confidence 367777888999999888888867778888875 99999999743 1344554333222
Q ss_pred CCCCCeEEEEecCCcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCc-EEEEEeCCceEEEEEcCCC
Q 009715 165 AKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDG-AFVVGHADGNLYVYEKSKD 243 (528)
Q Consensus 165 ~~~~~~l~~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~-~l~tg~~dg~v~vwd~~~~ 243 (528)
...++.+++++.||.|.+.++.... .++......-..+......-|..-+|....+. .++.+...+.|..||++..
T Consensus 1107 ~~~~~~~Av~t~DG~v~~~~id~~~---~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~ 1183 (1431)
T KOG1240|consen 1107 CGNGDQFAVSTKDGSVRVLRIDHYN---VSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMR 1183 (1431)
T ss_pred ccCCCeEEEEcCCCeEEEEEccccc---cccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhh
Confidence 7789999999999999999987621 11121111122222212234445556544443 7888888999999999763
Q ss_pred CCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCCCCEEEEEeCCCcEEEEecCCceEEeeec-ccCC
Q 009715 244 GAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGK-SYYG 322 (528)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~ 322 (528)
..... .. .+...|.|++++.+|.+++++.|+..|.+.+||++-+.++.... .+..
T Consensus 1184 ~~~w~-lk-----------------------~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~ 1239 (1431)
T KOG1240|consen 1184 HDAWR-LK-----------------------NQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARA 1239 (1431)
T ss_pred hhHHh-hh-----------------------cCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccC
Confidence 21100 00 01113889999999999999999999999999999877776543 2446
Q ss_pred CeEEEEEcCCC---CEEEE-Ee-CCCcEEEEECCCCeEEEEeecCCCCeEEEEEe-cCC---CCCC--------CCCCcc
Q 009715 323 ALLCCAWSMDG---KYILT-GG-EDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFD-SYW---SQPN--------SDGTAE 385 (528)
Q Consensus 323 ~v~~l~~sp~g---~~l~s-g~-~dg~v~vwd~~~~~~~~~~~~h~~~V~~v~f~-p~~---~~~~--------~dg~~~ 385 (528)
++..+..+|-. ...++ +. ..+.|.+|++.+|.+...+... ..+..+.+. |.- +++. .+++
T Consensus 1240 ~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s-~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~-- 1316 (1431)
T KOG1240|consen 1240 PIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWAS-DGAPILSYALPSNDARKPDSLAGISCGVCEKN-- 1316 (1431)
T ss_pred CcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcC-CCCcchhhhcccccCCCCCcccceeeecccCC--
Confidence 77777777633 34444 44 5788999999998766555422 111112111 100 0000 0111
Q ss_pred ceeEEEEEEeCCCeEEEEEccCCeEEE-EeecCC-CCCC------CeecCCCCCccCCcee----eeecCCCCceeeecC
Q 009715 386 TVMYRFGSVGQDTRLLLWDLEMDEIVV-PLRRGP-LGGS------PTFSTGSQSAHWDNVC----PVGTLQPAPSMRDVP 453 (528)
Q Consensus 386 ~~~~~l~s~s~D~~i~lwd~~~~~~~~-~~~~~~-~~~~------~~~s~~~~~~~~d~~~----~~g~~~~~~~~~d~~ 453 (528)
..+.+++.|..|+.||....+... .+..+. .... ....++++ ..+..+ .++-. ...+..+..
T Consensus 1317 ---~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~~~~~i~~~~--~i~e~i~~~~tv~~t-~~~~~~~~~ 1390 (1431)
T KOG1240|consen 1317 ---GFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSESYDLSTIPGSQ--FIDEFIIYQQTVGLT-EALRENQKL 1390 (1431)
T ss_pred ---ceeeecCCccceeeccCCCcccccccccCccccccccchhccccccCCCc--cchhhhhhhhhcCch-hhccccccc
Confidence 378999999999999998765442 111110 0111 11111111 111100 00000 000001111
Q ss_pred CCCceEEeecCCCCeEEEEEeCC---eEEEEECCCeEEEEe
Q 009715 454 KLSPLVAHRVHTEPLSGLIFTQE---SVLTVCREGHIKIWM 491 (528)
Q Consensus 454 ~~~~~~~~~~h~~~V~~l~~s~d---~l~t~s~Dg~i~iW~ 491 (528)
...+...-..|.++|+++++... .|++++.||.|+||.
T Consensus 1391 ~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1391 RPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred ccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence 11122223368899999998763 499999999999994
No 197
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.64 E-value=4.9e-16 Score=147.55 Aligned_cols=255 Identities=20% Similarity=0.288 Sum_probs=197.9
Q ss_pred CCCCCeEEEEecCCcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCC
Q 009715 165 AKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDG 244 (528)
Q Consensus 165 ~~~~~~l~~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~ 244 (528)
..+|+.|+.|+..|.|..+|..+. .+...+. -...|.++.|..+.+ +||++- ...++|||-. |
T Consensus 138 trnGrhlllgGrKGHlAa~Dw~t~------~L~~Ei~-------v~Etv~Dv~~LHneq-~~AVAQ-K~y~yvYD~~--G 200 (545)
T KOG1272|consen 138 TRNGRHLLLGGRKGHLAAFDWVTK------KLHFEIN-------VMETVRDVTFLHNEQ-FFAVAQ-KKYVYVYDNN--G 200 (545)
T ss_pred cCCccEEEecCCccceeeeecccc------eeeeeee-------hhhhhhhhhhhcchH-HHHhhh-hceEEEecCC--C
Confidence 689999999999999999998762 2222222 345799999999888 677665 4689999964 2
Q ss_pred CCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCCCCEEEEEeCCCcEEEEecCCceEEeeecccCCCe
Q 009715 245 AGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGAL 324 (528)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v 324 (528)
.... .+.. ...|..+.|-|..-+|++++..|.++.-|+.+|+.+..+..-.+.+
T Consensus 201 tElH-------------------------Clk~-~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~ 254 (545)
T KOG1272|consen 201 TELH-------------------------CLKR-HIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRT 254 (545)
T ss_pred cEEe-------------------------ehhh-cCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCcc
Confidence 2211 1111 2578899999999999999999999999999999998888778888
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEE
Q 009715 325 LCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWD 404 (528)
Q Consensus 325 ~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd 404 (528)
..+.-+|-.-.+-+|...|+|.+|.....+++..+..|.++|.+|++++ +| ++++|.+.|..|+|||
T Consensus 255 ~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~-------~G------~YMaTtG~Dr~~kIWD 321 (545)
T KOG1272|consen 255 DVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDR-------GG------RYMATTGLDRKVKIWD 321 (545)
T ss_pred chhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECC-------CC------cEEeecccccceeEee
Confidence 8899999888899999999999999999999988889999999999999 99 8999999999999999
Q ss_pred ccCCeEEEEeecCCCCCCCeecCCCCCccCCceeeeecCCCCceeeecCCCCceEEeecCCCCeEEEEEeCCeEEEEECC
Q 009715 405 LEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQESVLTVCRE 484 (528)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~~s~d~l~t~s~D 484 (528)
+++-..+.++.. ..+...++||..+++.++..
T Consensus 322 lR~~~ql~t~~t------------------------------------------------p~~a~~ls~SqkglLA~~~G 353 (545)
T KOG1272|consen 322 LRNFYQLHTYRT------------------------------------------------PHPASNLSLSQKGLLALSYG 353 (545)
T ss_pred eccccccceeec------------------------------------------------CCCccccccccccceeeecC
Confidence 998664433322 23456788998888888888
Q ss_pred CeEEEEe--CCCC-ccccC--C--Cccce--EEEccCCceEEEeeeec
Q 009715 485 GHIKIWM--RPGV-AESQS--S--SSETV--LSTSSKDKPLLSSKVVT 523 (528)
Q Consensus 485 g~i~iW~--~~~~-~~~~~--~--~~~~v--l~~spd~~~l~s~~~~g 523 (528)
..|.||. +.+. ..... . ....| +.|.|-...|-+|+..|
T Consensus 354 ~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G 401 (545)
T KOG1272|consen 354 DHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGG 401 (545)
T ss_pred CeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCC
Confidence 8999996 2211 11110 1 11233 77778777777776553
No 198
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.63 E-value=4.4e-14 Score=136.72 Aligned_cols=172 Identities=17% Similarity=0.268 Sum_probs=125.0
Q ss_pred eCCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECC-CCCEEEEEe
Q 009715 220 PGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST-DGTYLATVG 298 (528)
Q Consensus 220 p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp-dg~~l~s~~ 298 (528)
|.+- -|+.|-.-|.|.+.|... ......+.. .-...+..|+|+.|-| +...++++-
T Consensus 183 ~~g~-dllIGf~tGqvq~idp~~-~~~sklfne---------------------~r~i~ktsvT~ikWvpg~~~~Fl~a~ 239 (636)
T KOG2394|consen 183 PKGL-DLLIGFTTGQVQLIDPIN-FEVSKLFNE---------------------ERLINKSSVTCIKWVPGSDSLFLVAH 239 (636)
T ss_pred CCCc-ceEEeeccCceEEecchh-hHHHHhhhh---------------------cccccccceEEEEEEeCCCceEEEEE
Confidence 3444 578888889999888754 110000100 0011137899999999 566777788
Q ss_pred CCCcEEEEecCC--------------ceE--Eee------------ecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 009715 299 RDGYLRVFDYSK--------------EQL--ICG------------GKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSM 350 (528)
Q Consensus 299 ~dg~i~vwd~~~--------------~~~--~~~------------~~~~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~ 350 (528)
.+|.+.++|..- +.. +.+ +.--.+.|+.++|+|||++||+.+.||.++|||.
T Consensus 240 ~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~f 319 (636)
T KOG2394|consen 240 ASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDF 319 (636)
T ss_pred ecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeec
Confidence 899999997631 111 111 1112357889999999999999999999999999
Q ss_pred CCCeEEEEeecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEEEeecC-CCCCCCeecC
Q 009715 351 EDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRG-PLGGSPTFST 427 (528)
Q Consensus 351 ~~~~~~~~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~-~~~~~~~~s~ 427 (528)
.+.+++..++..-+...|++|+| || ++|++|++|.-|.||.+..++.+..=..+ .-+..++|.+
T Consensus 320 dt~eLlg~mkSYFGGLLCvcWSP-------DG------KyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 320 DTQELLGVMKSYFGGLLCVCWSP-------DG------KYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred cHHHHHHHHHhhccceEEEEEcC-------Cc------cEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence 99988888877778899999999 99 89999999999999999998887664432 3455566643
No 199
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=1.5e-14 Score=132.80 Aligned_cols=191 Identities=17% Similarity=0.238 Sum_probs=147.6
Q ss_pred EEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECC--CCCEEEEEeCCCc
Q 009715 225 AFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST--DGTYLATVGRDGY 302 (528)
Q Consensus 225 ~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp--dg~~l~s~~~dg~ 302 (528)
.+|++...|.|++||..+. +.+..+.++...++.+.|.. ....+.+|+.||.
T Consensus 42 ~vav~lSngsv~lyd~~tg--------------------------~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~ 95 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTG--------------------------QLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGT 95 (376)
T ss_pred eEEEEecCCeEEEEeccch--------------------------hhhheecCCCCcccceEEecCCCCCeeEEeccCCe
Confidence 7999999999999999862 34556667778888899877 4668999999999
Q ss_pred EEEEecCCceEE--eeecccC-CCeEEEEEcCCCCEEEEEeC----CCcEEEEECCCCeE-EEEe-ecCCCCeEEEEEec
Q 009715 303 LRVFDYSKEQLI--CGGKSYY-GALLCCAWSMDGKYILTGGE----DDLVQVWSMEDRKV-VAWG-EGHNSWVSGVAFDS 373 (528)
Q Consensus 303 i~vwd~~~~~~~--~~~~~~~-~~v~~l~~sp~g~~l~sg~~----dg~v~vwd~~~~~~-~~~~-~~h~~~V~~v~f~p 373 (528)
|++||++..... .....+. .+..|++..-.++.+++|.+ |-.|.+||++..+. +..+ +.|.+.|++|.|+|
T Consensus 96 Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP 175 (376)
T KOG1188|consen 96 VRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHP 175 (376)
T ss_pred EEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecC
Confidence 999999876543 3344454 46777777767778888754 66899999998654 5444 57999999999999
Q ss_pred CCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEEEeecCCCCCCCeecCCCCCccCCceeeeecCCCCceeeecC
Q 009715 374 YWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVP 453 (528)
Q Consensus 374 ~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~d~~~~~g~~~~~~~~~d~~ 453 (528)
. |. .+|++|+.||.|.|||+......-.+
T Consensus 176 ~------~p------nlLlSGSvDGLvnlfD~~~d~EeDaL--------------------------------------- 204 (376)
T KOG1188|consen 176 S------DP------NLLLSGSVDGLVNLFDTKKDNEEDAL--------------------------------------- 204 (376)
T ss_pred C------CC------CeEEeecccceEEeeecCCCcchhhH---------------------------------------
Confidence 2 44 69999999999999999875322111
Q ss_pred CCCceEEeecCCCCeEEEEEeCC---eEEEEECCCeEEEEeCCCCcc
Q 009715 454 KLSPLVAHRVHTEPLSGLIFTQE---SVLTVCREGHIKIWMRPGVAE 497 (528)
Q Consensus 454 ~~~~~~~~~~h~~~V~~l~~s~d---~l~t~s~Dg~i~iW~~~~~~~ 497 (528)
...-.|...|..+.|..+ .|.+-+.+.+..+|++..+.+
T Consensus 205 -----~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~ 246 (376)
T KOG1188|consen 205 -----LHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSE 246 (376)
T ss_pred -----HHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCCh
Confidence 112246778999999985 399999999999999987663
No 200
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.62 E-value=1.5e-14 Score=142.78 Aligned_cols=265 Identities=13% Similarity=0.175 Sum_probs=181.7
Q ss_pred ceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCCC
Q 009715 212 RCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDG 291 (528)
Q Consensus 212 ~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spdg 291 (528)
.|..++|-|||..++++++ ..+.+||...+ ..+..+++|...|+|++|+.||
T Consensus 14 ci~d~afkPDGsqL~lAAg--~rlliyD~ndG--------------------------~llqtLKgHKDtVycVAys~dG 65 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG--SRLLVYDTSDG--------------------------TLLQPLKGHKDTVYCVAYAKDG 65 (1081)
T ss_pred chheeEECCCCceEEEecC--CEEEEEeCCCc--------------------------ccccccccccceEEEEEEccCC
Confidence 7999999999994444443 47999998753 3456678899999999999999
Q ss_pred CEEEEEeCCCcEEEEecCCceEEeeecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCeEEEEE
Q 009715 292 TYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAF 371 (528)
Q Consensus 292 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~v~f 371 (528)
+.+|+|+.|+.|.+|+.+-...++ ..|.+.|.|+.|+|-...|++++-. ..-+|..+..... ..+ ....|.+.+|
T Consensus 66 krFASG~aDK~VI~W~~klEG~Lk--YSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~-K~k-ss~R~~~CsW 140 (1081)
T KOG1538|consen 66 KRFASGSADKSVIIWTSKLEGILK--YSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVS-KHK-SSSRIICCSW 140 (1081)
T ss_pred ceeccCCCceeEEEecccccceee--eccCCeeeEeecCchHHHhhhcchh-hccccChhhhhHH-hhh-hheeEEEeee
Confidence 999999999999999976444333 3589999999999999999998765 4568987654332 211 3456888899
Q ss_pred ecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEEEeec----CCCCCCCeecCCCCCccCCceeeeecCCCCc
Q 009715 372 DSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRR----GPLGGSPTFSTGSQSAHWDNVCPVGTLQPAP 447 (528)
Q Consensus 372 ~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~----~~~~~~~~~s~~~~~~~~d~~~~~g~~~~~~ 447 (528)
.. || .+|+-|-.||+|.+-+-...+ ...+.. ..++.++.+++.+..+ .+..+.+-.....+
T Consensus 141 tn-------DG------qylalG~~nGTIsiRNk~gEe-k~~I~Rpgg~Nspiwsi~~~p~sg~G-~~di~aV~DW~qTL 205 (1081)
T KOG1538|consen 141 TN-------DG------QYLALGMFNGTISIRNKNGEE-KVKIERPGGSNSPIWSICWNPSSGEG-RNDILAVADWGQTL 205 (1081)
T ss_pred cC-------CC------cEEEEeccCceEEeecCCCCc-ceEEeCCCCCCCCceEEEecCCCCCC-ccceEEEEecccee
Confidence 88 99 799999999999988644333 333332 2455566776665321 22222222223333
Q ss_pred eeeecCCCCceEEeecCCCCeEEEEEeCC--eEEEEECCCeEEEEeCCCCccccCC-Cccce--EEEccCCceEEEeeee
Q 009715 448 SMRDVPKLSPLVAHRVHTEPLSGLIFTQE--SVLTVCREGHIKIWMRPGVAESQSS-SSETV--LSTSSKDKPLLSSKVV 522 (528)
Q Consensus 448 ~~~d~~~~~~~~~~~~h~~~V~~l~~s~d--~l~t~s~Dg~i~iW~~~~~~~~~~~-~~~~v--l~~spd~~~l~s~~~~ 522 (528)
..+.+.. +.+..-+.-.-.-.++.+.++ +++.|+.|+.++++...+-..-..+ ...-| +++-|++++++.|.++
T Consensus 206 SFy~LsG-~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqD 284 (1081)
T KOG1538|consen 206 SFYQLSG-KQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQD 284 (1081)
T ss_pred EEEEecc-eeecccccCCCCchhheeccCCcEEEEccCCCceEEEeecCeEEeeccccceeEEEEEEccCCceEEEEEcc
Confidence 3332221 111111111222346667675 4999999999999998875543333 23334 7779999999999999
Q ss_pred ccc
Q 009715 523 TSS 525 (528)
Q Consensus 523 gs~ 525 (528)
|.+
T Consensus 285 GTi 287 (1081)
T KOG1538|consen 285 GTI 287 (1081)
T ss_pred Cee
Confidence 865
No 201
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=1.2e-14 Score=137.07 Aligned_cols=195 Identities=17% Similarity=0.237 Sum_probs=148.2
Q ss_pred eEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCCCCE
Q 009715 214 TSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTY 293 (528)
Q Consensus 214 ~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spdg~~ 293 (528)
.+++|+++|. .+++++.||++|||+... ...+.....|.++|.++.|+|||++
T Consensus 148 k~vaf~~~gs-~latgg~dg~lRv~~~Ps--------------------------~~t~l~e~~~~~eV~DL~FS~dgk~ 200 (398)
T KOG0771|consen 148 KVVAFNGDGS-KLATGGTDGTLRVWEWPS--------------------------MLTILEEIAHHAEVKDLDFSPDGKF 200 (398)
T ss_pred eEEEEcCCCC-EeeeccccceEEEEecCc--------------------------chhhhhhHhhcCccccceeCCCCcE
Confidence 7899999999 999999999999999654 2334444567799999999999999
Q ss_pred EEEEeCCCcEEEEecCCceEEeeecc--cCCCeEEEEEcCCC-----CEEEEEeCCCcEEEEECCCCe---EE--EEeec
Q 009715 294 LATVGRDGYLRVFDYSKEQLICGGKS--YYGALLCCAWSMDG-----KYILTGGEDDLVQVWSMEDRK---VV--AWGEG 361 (528)
Q Consensus 294 l~s~~~dg~i~vwd~~~~~~~~~~~~--~~~~v~~l~~sp~g-----~~l~sg~~dg~v~vwd~~~~~---~~--~~~~~ 361 (528)
|++.+.| ..+||+.+++..+..... -...+..+.|+.|+ .+++.-..-+.|+.||+...+ .+ .+...
T Consensus 201 lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~ 279 (398)
T KOG0771|consen 201 LASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIK 279 (398)
T ss_pred EEEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhh
Confidence 9999999 899999999976655432 23345667788776 233334445667776654311 11 11111
Q ss_pred CCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEEEeecCCCCCCCeecCCCCCccCCceeeee
Q 009715 362 HNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVG 441 (528)
Q Consensus 362 h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~d~~~~~g 441 (528)
-...|++++.++ || ++++.|+.||.|-|++..+-++++.++.
T Consensus 280 ~~~siSsl~VS~-------dG------kf~AlGT~dGsVai~~~~~lq~~~~vk~------------------------- 321 (398)
T KOG0771|consen 280 RFKSISSLAVSD-------DG------KFLALGTMDGSVAIYDAKSLQRLQYVKE------------------------- 321 (398)
T ss_pred ccCcceeEEEcC-------CC------cEEEEeccCCcEEEEEeceeeeeEeehh-------------------------
Confidence 234699999999 99 8999999999999999988777655543
Q ss_pred cCCCCceeeecCCCCceEEeecCCCCeEEEEEeCC--eEEEEECCCeEEEEeCCCC
Q 009715 442 TLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE--SVLTVCREGHIKIWMRPGV 495 (528)
Q Consensus 442 ~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~~s~d--~l~t~s~Dg~i~iW~~~~~ 495 (528)
.|...|+.|.|+|| ++++.+.|..+.|-.+.-.
T Consensus 322 ---------------------aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~vd 356 (398)
T KOG0771|consen 322 ---------------------AHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAVD 356 (398)
T ss_pred ---------------------hheeeeeeEEEcCCcCcccccccCCceeEEEEeec
Confidence 68899999999997 4888899988888887653
No 202
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.61 E-value=2.1e-12 Score=120.00 Aligned_cols=160 Identities=18% Similarity=0.198 Sum_probs=125.9
Q ss_pred CCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECC
Q 009715 210 NSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST 289 (528)
Q Consensus 210 ~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp 289 (528)
..+|.++.++.+ +|+++-.+ .|+|||+.... ... .+..+..+...+.++++++
T Consensus 87 pt~IL~VrmNr~---RLvV~Lee-~IyIydI~~Mk-lLh----------------------TI~t~~~n~~gl~AlS~n~ 139 (391)
T KOG2110|consen 87 PTSILAVRMNRK---RLVVCLEE-SIYIYDIKDMK-LLH----------------------TIETTPPNPKGLCALSPNN 139 (391)
T ss_pred CCceEEEEEccc---eEEEEEcc-cEEEEecccce-eeh----------------------hhhccCCCccceEeeccCC
Confidence 457888888765 56666655 49999998622 111 1222222335566777777
Q ss_pred CCCEEEEEe--CCCcEEEEecCCceEEeeecccCCCeEEEEEcCCCCEEEEEeCCCc-EEEEECCCCeEEEEeecC--CC
Q 009715 290 DGTYLATVG--RDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDL-VQVWSMEDRKVVAWGEGH--NS 364 (528)
Q Consensus 290 dg~~l~s~~--~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~sg~~dg~-v~vwd~~~~~~~~~~~~h--~~ 364 (528)
.+.+||.-+ ..|.|.+||+.+-+.+..+..|.+.+-+++|+++|.+||++++.|+ ||||.+.+|+.+..|+.- ..
T Consensus 140 ~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~ 219 (391)
T KOG2110|consen 140 ANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPV 219 (391)
T ss_pred CCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceee
Confidence 778888753 4689999999999999999999999999999999999999999885 799999999999888743 34
Q ss_pred CeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCe
Q 009715 365 WVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDE 409 (528)
Q Consensus 365 ~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~ 409 (528)
.|.+++|+| |+ .+|.+.+..++|.+|.+....
T Consensus 220 ~IySL~Fs~-------ds------~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 220 SIYSLSFSP-------DS------QFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred EEEEEEECC-------CC------CeEEEecCCCeEEEEEecccc
Confidence 578999999 98 789999999999999987654
No 203
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.61 E-value=1.1e-13 Score=126.25 Aligned_cols=320 Identities=15% Similarity=0.134 Sum_probs=195.2
Q ss_pred eeeeCCCccEEEEeCCCcEEEEeCCCCCCC--------------CCCCCeEEE-EecCCcEEEEEccccccccccceeee
Q 009715 135 NTNFDGKGTYIIFNVGDAIFISDLNSQDKD--------------AKDGHDLLI-GLNSGDVYSVSLRQQLQDVGKKLVGA 199 (528)
Q Consensus 135 ~~~~~~~g~~~~~~~~~~i~v~~~~~~~~~--------------~~~~~~l~~-g~~~G~v~iwd~~~~~~~~~~~~~~~ 199 (528)
...++++|++++....-.+.|.|.+.-... ..|...+++ ...++.|.+|++.+..
T Consensus 13 ~c~fSp~g~yiAs~~~yrlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpe---------- 82 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRYRLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPE---------- 82 (447)
T ss_pred ceeECCCCCeeeeeeeeEEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecce----------
Confidence 345566777777766667777777655333 556666655 5568899999998721
Q ss_pred eeeccCCcccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecC
Q 009715 200 HHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQ 279 (528)
Q Consensus 200 ~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 279 (528)
+..........+..+.|+|+|+++|.+...|-.|.||.+.+.... .++.-.
T Consensus 83 --w~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~---------------------------~~~~pK 133 (447)
T KOG4497|consen 83 --WYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGY---------------------------LLPHPK 133 (447)
T ss_pred --eEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeE---------------------------Eecccc
Confidence 111111156689999999999889999999999999999863211 111113
Q ss_pred CCeEEEEECCCCCEEEEEeCCCc---EEEEecCCceEEeeecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEE
Q 009715 280 GSINSIAFSTDGTYLATVGRDGY---LRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVV 356 (528)
Q Consensus 280 ~~v~~l~~spdg~~l~s~~~dg~---i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~~~ 356 (528)
..+..++|+|||++.+.+++-.. +.|..-..-+.+..++...-....+.|+|||..|++ ||.--...+
T Consensus 134 ~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laV---------wd~~Leykv 204 (447)
T KOG4497|consen 134 TNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAV---------WDNVLEYKV 204 (447)
T ss_pred cCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEE---------ecchhhhee
Confidence 45688999999999998875321 122211222333444444456778999999987765 432211111
Q ss_pred EEeecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEEEeecC-------------------
Q 009715 357 AWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRG------------------- 417 (528)
Q Consensus 357 ~~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~------------------- 417 (528)
...+ -.-.+..++|+| .+ .+|+.|+.|+.+|+-+--+-+....+-+.
T Consensus 205 ~aYe-~~lG~k~v~wsP-------~~------qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ 270 (447)
T KOG4497|consen 205 YAYE-RGLGLKFVEWSP-------CN------QFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIV 270 (447)
T ss_pred eeee-eccceeEEEecc-------cc------ceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchh
Confidence 1111 123577899999 77 79999999999988543322221111100
Q ss_pred ------------------------------------------------CCCCCCeecCCCCCccCCceeeeecCCCCcee
Q 009715 418 ------------------------------------------------PLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSM 449 (528)
Q Consensus 418 ------------------------------------------------~~~~~~~~s~~~~~~~~d~~~~~g~~~~~~~~ 449 (528)
-....++|+++++... ...-.....+-+
T Consensus 271 ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~a----Trnd~~PnalW~ 346 (447)
T KOG4497|consen 271 QLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAA----TRNDKYPNALWL 346 (447)
T ss_pred hhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEe----eecCCCCceEEE
Confidence 0011234444442100 022233456778
Q ss_pred eecCCCCceEEeecCCCCeEEEEEeCCe--EEEEECCCeEEEEeCCCCccccCCCcc-ce--EEEccCCceEEEeee
Q 009715 450 RDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWMRPGVAESQSSSSE-TV--LSTSSKDKPLLSSKV 521 (528)
Q Consensus 450 ~d~~~~~~~~~~~~h~~~V~~l~~s~d~--l~t~s~Dg~i~iW~~~~~~~~~~~~~~-~v--l~~spd~~~l~s~~~ 521 (528)
||++..+....+ ....+|....|+|.. |+.+.....+++|...+.........+ .| +.+..+|..|+..+.
T Consensus 347 Wdlq~l~l~avL-iQk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~vP~~GF~i~~l~W~~~g~~i~l~~k 422 (447)
T KOG4497|consen 347 WDLQNLKLHAVL-IQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVPKKGFNIQKLQWLQPGEFIVLCGK 422 (447)
T ss_pred Eechhhhhhhhh-hhccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEecCCCCceeeeEEecCCCcEEEEEcC
Confidence 999887655444 346789999999964 766666678999998875543333222 22 666777777765544
No 204
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.60 E-value=9.5e-14 Score=142.12 Aligned_cols=232 Identities=18% Similarity=0.159 Sum_probs=150.8
Q ss_pred CcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeCC---ceEEEEEcCCCCCCCCcccccc
Q 009715 178 GDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHAD---GNLYVYEKSKDGAGDSSFPVIK 254 (528)
Q Consensus 178 G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~d---g~v~vwd~~~~~~~~~~~~~~~ 254 (528)
.+|++||..... . ..+ ..|...+...+|+|+|+ .|+..+.+ ..|++||+..+..
T Consensus 184 ~~i~i~d~dg~~------~---~~l----t~~~~~v~~p~wSPDG~-~la~~s~~~~~~~i~i~dl~tg~~--------- 240 (429)
T PRK01742 184 YEVRVADYDGFN------Q---FIV----NRSSQPLMSPAWSPDGS-KLAYVSFENKKSQLVVHDLRSGAR--------- 240 (429)
T ss_pred EEEEEECCCCCC------c---eEe----ccCCCccccceEcCCCC-EEEEEEecCCCcEEEEEeCCCCce---------
Confidence 588899876411 0 001 12667899999999999 66665533 4799999875211
Q ss_pred ccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCCCCEEEEEe-CCCcEEE--EecCCceEEeeecccCCCeEEEEEcC
Q 009715 255 DQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVG-RDGYLRV--FDYSKEQLICGGKSYYGALLCCAWSM 331 (528)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~~-~dg~i~v--wd~~~~~~~~~~~~~~~~v~~l~~sp 331 (528)
..+..+. +....++|+|||++|+.+. .+|.+.| ||+.+++. ..+..+...+....|+|
T Consensus 241 ---------------~~l~~~~---g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSp 301 (429)
T PRK01742 241 ---------------KVVASFR---GHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSP 301 (429)
T ss_pred ---------------EEEecCC---CccCceeECCCCCEEEEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEECC
Confidence 0111111 2334689999999988865 6776555 46666654 34455666788899999
Q ss_pred CCCEEEEEe-CCCcEEEEECCCC-eEEEEeecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCe
Q 009715 332 DGKYILTGG-EDDLVQVWSMEDR-KVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDE 409 (528)
Q Consensus 332 ~g~~l~sg~-~dg~v~vwd~~~~-~~~~~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~ 409 (528)
||+.|+..+ .++...||+++.. .....+ .+.. ..+.|+| || ..|+..+.++ +.+||+.+++
T Consensus 302 DG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~Sp-------DG------~~ia~~~~~~-i~~~Dl~~g~ 364 (429)
T PRK01742 302 DGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISA-------DG------KTLVMINGDN-VVKQDLTSGS 364 (429)
T ss_pred CCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCC-------CC------CEEEEEcCCC-EEEEECCCCC
Confidence 999877554 5788888877542 222223 3443 4578898 99 5677766665 5669999887
Q ss_pred EEEEeecCCCCCCCeecCCCCCccCCceeeeecCCCCceeeec--CCCCceEEeecCCCCeEEEEEeC
Q 009715 410 IVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDV--PKLSPLVAHRVHTEPLSGLIFTQ 475 (528)
Q Consensus 410 ~~~~~~~~~~~~~~~~s~~~~~~~~d~~~~~g~~~~~~~~~d~--~~~~~~~~~~~h~~~V~~l~~s~ 475 (528)
....... .....+.|++++ ..+...+.++...+|++ ..++.+..+..|.+.+..++|+|
T Consensus 365 ~~~lt~~-~~~~~~~~sPdG------~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp 425 (429)
T PRK01742 365 TEVLSST-FLDESPSISPNG------IMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSP 425 (429)
T ss_pred eEEecCC-CCCCCceECCCC------CEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccCC
Confidence 6533222 344667788887 34444445566666664 34567777778888888889987
No 205
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.60 E-value=1.7e-13 Score=142.02 Aligned_cols=273 Identities=17% Similarity=0.209 Sum_probs=180.0
Q ss_pred CCCCCeEEEEecCCcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeC-CCcEEEEEeCCceEEEEEcCCC
Q 009715 165 AKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPG-GDGAFVVGHADGNLYVYEKSKD 243 (528)
Q Consensus 165 ~~~~~~l~~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~-g~~~l~tg~~dg~v~vwd~~~~ 243 (528)
++-...++++...-.|.+||.+.. +.+- .| ..+......|+.+.+..+ ...++++|+.||.|+||+--..
T Consensus 1073 hpf~p~i~~ad~r~~i~vwd~e~~-----~~l~---~F-~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~ 1143 (1387)
T KOG1517|consen 1073 HPFEPQIAAADDRERIRVWDWEKG-----RLLN---GF-DNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYAD 1143 (1387)
T ss_pred cCCCceeEEcCCcceEEEEecccC-----ceec---cc-cCCCCCCCccceeeeecccchhheeeeccCceEEEeccccc
Confidence 666778888887889999998751 1111 11 112235567999888543 3338999999999999986532
Q ss_pred CCCCCccccccccceeEEeccCCCCCCCeEEEeec-------CCCeEEEEECCCCCEEEEEeCCCcEEEEecCCceEEee
Q 009715 244 GAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHIC-------QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICG 316 (528)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-------~~~v~~l~~spdg~~l~s~~~dg~i~vwd~~~~~~~~~ 316 (528)
.. .+.+.+.-|..- .+.-.-++|.....+|++++.-..|+|||....+.+..
T Consensus 1144 ~~---------------------~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~d 1202 (1387)
T KOG1517|consen 1144 KW---------------------KKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVAD 1202 (1387)
T ss_pred cc---------------------CCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEee
Confidence 21 011122222210 11224567777555666666688999999998887766
Q ss_pred ecc-cCCCeEEEEEc-CCCCEEEEEeCCCcEEEEECCCC---eEEEEeecCCCC--eEEEEEecCCCCCCCCCCccceeE
Q 009715 317 GKS-YYGALLCCAWS-MDGKYILTGGEDDLVQVWSMEDR---KVVAWGEGHNSW--VSGVAFDSYWSQPNSDGTAETVMY 389 (528)
Q Consensus 317 ~~~-~~~~v~~l~~s-p~g~~l~sg~~dg~v~vwd~~~~---~~~~~~~~h~~~--V~~v~f~p~~~~~~~dg~~~~~~~ 389 (528)
+.. -...|+.+.-+ +.|..++.|..||.|++||.+.. ..+...+.|..+ |..+.+.+ .|- .
T Consensus 1203 iP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~-------~G~-----~ 1270 (1387)
T KOG1517|consen 1203 IPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQR-------QGL-----G 1270 (1387)
T ss_pred cccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeec-------CCC-----c
Confidence 542 22345555433 24789999999999999999864 356777789988 99999988 662 2
Q ss_pred EEEEEeCCCeEEEEEccCCeEEEEeecCCCCCCCeecCCCCCccCCceeeeecCCCCceeeecCCCCceEEeecCCCCeE
Q 009715 390 RFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLS 469 (528)
Q Consensus 390 ~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~ 469 (528)
.|++|+.||.|++||+++......+.. .......+.++
T Consensus 1271 elvSgs~~G~I~~~DlR~~~~e~~~~i------------------------------------------v~~~~yGs~lT 1308 (1387)
T KOG1517|consen 1271 ELVSGSQDGDIQLLDLRMSSKETFLTI------------------------------------------VAHWEYGSALT 1308 (1387)
T ss_pred ceeeeccCCeEEEEecccCccccccee------------------------------------------eeccccCccce
Confidence 599999999999999998522211110 00000112478
Q ss_pred EEEEeCCe--EEEEECCCeEEEEeCCCCccccCC--------Cccce--EEEccCCceEEEeeee
Q 009715 470 GLIFTQES--VLTVCREGHIKIWMRPGVAESQSS--------SSETV--LSTSSKDKPLLSSKVV 522 (528)
Q Consensus 470 ~l~~s~d~--l~t~s~Dg~i~iW~~~~~~~~~~~--------~~~~v--l~~spd~~~l~s~~~~ 522 (528)
++..+++. |++|+. +.|+||++.+++..... ..+.+ ++|.|-.-.||.|..+
T Consensus 1309 al~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~D 1372 (1387)
T KOG1517|consen 1309 ALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSAD 1372 (1387)
T ss_pred eeeeccCCCeeeecCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCC
Confidence 88888863 777777 99999999887744331 11222 8888888888877555
No 206
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.59 E-value=6.1e-14 Score=132.36 Aligned_cols=192 Identities=22% Similarity=0.263 Sum_probs=138.2
Q ss_pred CCCCCeEEEEecCCcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCC
Q 009715 165 AKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDG 244 (528)
Q Consensus 165 ~~~~~~l~~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~ 244 (528)
..++..|++|..||.+++|+..+.. ...+...|...|.++.|+|||+ .|++-+.| ..+||+.+.+
T Consensus 153 ~~~gs~latgg~dg~lRv~~~Ps~~------------t~l~e~~~~~eV~DL~FS~dgk-~lasig~d-~~~VW~~~~g- 217 (398)
T KOG0771|consen 153 NGDGSKLATGGTDGTLRVWEWPSML------------TILEEIAHHAEVKDLDFSPDGK-FLASIGAD-SARVWSVNTG- 217 (398)
T ss_pred cCCCCEeeeccccceEEEEecCcch------------hhhhhHhhcCccccceeCCCCc-EEEEecCC-ceEEEEeccC-
Confidence 7889999999999999999966511 1112223889999999999999 99999999 9999999874
Q ss_pred CCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCCC---CE--EEEEeCCCcEEEEecCCce------E
Q 009715 245 AGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDG---TY--LATVGRDGYLRVFDYSKEQ------L 313 (528)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spdg---~~--l~s~~~dg~i~vwd~~~~~------~ 313 (528)
.......+... .-....+.|+.|+ .+ ++.-..-+.|+.||+.... .
T Consensus 218 ~~~a~~t~~~k-----------------------~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~ 274 (398)
T KOG0771|consen 218 AALARKTPFSK-----------------------DEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRL 274 (398)
T ss_pred chhhhcCCccc-----------------------chhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccch
Confidence 22111111111 1223456676655 22 2222334566666654221 1
Q ss_pred EeeecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEee-cCCCCeEEEEEecCCCCCCCCCCccceeEEEE
Q 009715 314 ICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGE-GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFG 392 (528)
Q Consensus 314 ~~~~~~~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~~~~~~~-~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~ 392 (528)
.+.+. -...|.+++.++||++++.|+.||.|-|++..+.++++..+ .|...|+.+.|+| |. +.++
T Consensus 275 ~~~~~-~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~P-------ds------r~~~ 340 (398)
T KOG0771|consen 275 RKKIK-RFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSP-------DS------RYLA 340 (398)
T ss_pred hhhhh-ccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcC-------Cc------Cccc
Confidence 11122 23469999999999999999999999999999887776554 7999999999999 87 6889
Q ss_pred EEeCCCeEEEEEccCC
Q 009715 393 SVGQDTRLLLWDLEMD 408 (528)
Q Consensus 393 s~s~D~~i~lwd~~~~ 408 (528)
+.+.|....+.-+.-.
T Consensus 341 svSs~~~~~v~~l~vd 356 (398)
T KOG0771|consen 341 SVSSDNEAAVTKLAVD 356 (398)
T ss_pred ccccCCceeEEEEeec
Confidence 9999999988877653
No 207
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.59 E-value=2.8e-13 Score=122.30 Aligned_cols=157 Identities=18% Similarity=0.395 Sum_probs=113.8
Q ss_pred eEEEEeeCCCcEEEEEeC---------CceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeec-CCCeE
Q 009715 214 TSVTWVPGGDGAFVVGHA---------DGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHIC-QGSIN 283 (528)
Q Consensus 214 ~~l~~~p~g~~~l~tg~~---------dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~ 283 (528)
-.+.|+|+|+.+++.... -|...+|.++..+ .++..+... .++|.
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~-------------------------~~~~~i~l~~~~~I~ 63 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKN-------------------------IPVESIELKKEGPIH 63 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCC-------------------------CccceeeccCCCceE
Confidence 358899999955554441 1345555554322 233333332 35799
Q ss_pred EEEECCCCCEEEEEe--CCCcEEEEecCCceEEeeecccCCCeEEEEEcCCCCEEEEEeCC---CcEEEEECCCCeEEEE
Q 009715 284 SIAFSTDGTYLATVG--RDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGED---DLVQVWSMEDRKVVAW 358 (528)
Q Consensus 284 ~l~~spdg~~l~s~~--~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~sg~~d---g~v~vwd~~~~~~~~~ 358 (528)
+++|+|+|+.|++.. .+..|.+||++ ++.+..+. ...++.+.|+|+|++|++++.+ |.|.+||+++.+.+..
T Consensus 64 ~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~ 140 (194)
T PF08662_consen 64 DVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKIST 140 (194)
T ss_pred EEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeec
Confidence 999999999876653 56799999997 66666664 4678899999999999998754 5699999999988887
Q ss_pred eecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEe------CCCeEEEEEccCCeEEEEe
Q 009715 359 GEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVG------QDTRLLLWDLEMDEIVVPL 414 (528)
Q Consensus 359 ~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s------~D~~i~lwd~~~~~~~~~~ 414 (528)
.+ |. .++.++|+| || ++|+++. .|..++||++. |+.+...
T Consensus 141 ~~-~~-~~t~~~WsP-------dG------r~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~ 186 (194)
T PF08662_consen 141 FE-HS-DATDVEWSP-------DG------RYLATATTSPRLRVDNGFKIWSFQ-GRLLYKK 186 (194)
T ss_pred cc-cC-cEEEEEEcC-------CC------CEEEEEEeccceeccccEEEEEec-CeEeEec
Confidence 76 44 478999999 99 6777765 38899999985 5555444
No 208
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.57 E-value=5.7e-13 Score=123.75 Aligned_cols=225 Identities=17% Similarity=0.226 Sum_probs=164.0
Q ss_pred CCeEEEEECCCCCEEEEEeCCCcEEEEecCCceEEeeecccCCCeEEEEEcCCCCEEEEEeCCC--cEEEEECCCCeEEE
Q 009715 280 GSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDD--LVQVWSMEDRKVVA 357 (528)
Q Consensus 280 ~~v~~l~~spdg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~sg~~dg--~v~vwd~~~~~~~~ 357 (528)
..++.+.|+.|...|..|+.|| .++|..+..............|..+-|+ ..++|..+.+. .+++++.+.+..++
T Consensus 6 ~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk~~~IC 82 (391)
T KOG2110|consen 6 PTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFS--SSLVAIVSIKQPRKLKVVHFKKKTTIC 82 (391)
T ss_pred cceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecc--cceeEEEecCCCceEEEEEcccCceEE
Confidence 4677788999999999999998 5778776544322222222345555565 44666655544 59999999888888
Q ss_pred EeecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEEEeecCC--CCCCCeecCCCCCccCC
Q 009715 358 WGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGP--LGGSPTFSTGSQSAHWD 435 (528)
Q Consensus 358 ~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~--~~~~~~~s~~~~~~~~d 435 (528)
.+. ....|.+|.++. ++|+.+=++. |.|||++..+.+.++...+ +....++++.... --
T Consensus 83 e~~-fpt~IL~VrmNr---------------~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n--~y 143 (391)
T KOG2110|consen 83 EIF-FPTSILAVRMNR---------------KRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNAN--CY 143 (391)
T ss_pred EEe-cCCceEEEEEcc---------------ceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCC--ce
Confidence 776 677899999976 5787777665 9999999999999987652 2334455544310 00
Q ss_pred ceeeeecCCCCceeeecCCCCceEEeecCCCCeEEEEEeCCe--EEEEECCCe-EEEEeCCCCccccCCCcc----ce--
Q 009715 436 NVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGH-IKIWMRPGVAESQSSSSE----TV-- 506 (528)
Q Consensus 436 ~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~~s~d~--l~t~s~Dg~-i~iW~~~~~~~~~~~~~~----~v-- 506 (528)
...+.....+.+.+||+.+.+++..+..|++.|.+++|++++ |+|+|..|+ |||+.++.++....-..+ .|
T Consensus 144 lAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IyS 223 (391)
T KOG2110|consen 144 LAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYS 223 (391)
T ss_pred EEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEE
Confidence 112344457789999999999999999999999999999996 999999997 899999887743332222 22
Q ss_pred EEEccCCceEEEeeeecccc
Q 009715 507 LSTSSKDKPLLSSKVVTSSY 526 (528)
Q Consensus 507 l~~spd~~~l~s~~~~gs~~ 526 (528)
++|+||+++|+.++..+++|
T Consensus 224 L~Fs~ds~~L~~sS~TeTVH 243 (391)
T KOG2110|consen 224 LSFSPDSQFLAASSNTETVH 243 (391)
T ss_pred EEECCCCCeEEEecCCCeEE
Confidence 99999999999887766553
No 209
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.57 E-value=3.7e-13 Score=125.83 Aligned_cols=222 Identities=11% Similarity=0.112 Sum_probs=162.4
Q ss_pred CCCCCeEEEEecCCcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeCC--ceEEEEEcCC
Q 009715 165 AKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHAD--GNLYVYEKSK 242 (528)
Q Consensus 165 ~~~~~~l~~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~d--g~v~vwd~~~ 242 (528)
......|+++..+|.+.+|.+........+... .. -...+..+.-++..++++++|+.. ..+.|||+..
T Consensus 112 ~~~dg~Litc~~sG~l~~~~~k~~d~hss~l~~--la-------~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~ 182 (412)
T KOG3881|consen 112 KLADGTLITCVSSGNLQVRHDKSGDLHSSKLIK--LA-------TGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQ 182 (412)
T ss_pred hhcCCEEEEEecCCcEEEEeccCCcccccccee--ee-------cCCceeeeccCCCCCceEecCchhcccceeeeeccc
Confidence 556678888999999999998752211111110 11 234677777788888788889998 8899999986
Q ss_pred CCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCC--CCEEEEEeCCCcEEEEecCCce-EEeeecc
Q 009715 243 DGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTD--GTYLATVGRDGYLRVFDYSKEQ-LICGGKS 319 (528)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spd--g~~l~s~~~dg~i~vwd~~~~~-~~~~~~~ 319 (528)
.. ..+.....++... .-.+. -.++++.|-+. ...||+++.-+++|+||.+.++ ++..+.-
T Consensus 183 ~~---qiw~aKNvpnD~L--------~LrVP------vW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~ 245 (412)
T KOG3881|consen 183 SK---QIWSAKNVPNDRL--------GLRVP------VWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDF 245 (412)
T ss_pred ce---eeeeccCCCCccc--------cceee------eeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEecc
Confidence 31 1221111111000 01112 23568889886 7899999999999999998664 5666666
Q ss_pred cCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEE-eecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCC
Q 009715 320 YYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAW-GEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDT 398 (528)
Q Consensus 320 ~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~~~~~-~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~ 398 (528)
...++.++...|.++++++|..-+.+..||++.++.+.. +++..+.|++|..+| .+ .++++++.|.
T Consensus 246 ~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp-------~~------~~las~GLDR 312 (412)
T KOG3881|consen 246 LENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHP-------TH------PVLASCGLDR 312 (412)
T ss_pred ccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcC-------CC------ceEEeeccce
Confidence 678999999999999999999999999999999988766 888999999999999 76 6999999999
Q ss_pred eEEEEEccCCeEEEEeecCCCCCCCee
Q 009715 399 RLLLWDLEMDEIVVPLRRGPLGGSPTF 425 (528)
Q Consensus 399 ~i~lwd~~~~~~~~~~~~~~~~~~~~~ 425 (528)
.|||+|+.+.+.+..+........+.+
T Consensus 313 yvRIhD~ktrkll~kvYvKs~lt~il~ 339 (412)
T KOG3881|consen 313 YVRIHDIKTRKLLHKVYVKSRLTFILL 339 (412)
T ss_pred eEEEeecccchhhhhhhhhccccEEEe
Confidence 999999999777655443333333333
No 210
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.57 E-value=1.1e-11 Score=122.78 Aligned_cols=236 Identities=14% Similarity=0.145 Sum_probs=146.1
Q ss_pred CCCCCeEEEEe-cCCcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEe-CCceEEEEEcCC
Q 009715 165 AKDGHDLLIGL-NSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGH-ADGNLYVYEKSK 242 (528)
Q Consensus 165 ~~~~~~l~~g~-~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~-~dg~v~vwd~~~ 242 (528)
+++++.|+++. .++.|.+|++... ++ +....... .......++|+|+++ +|++++ .++.|.+|+++.
T Consensus 43 spd~~~lyv~~~~~~~i~~~~~~~~----g~-l~~~~~~~-----~~~~p~~i~~~~~g~-~l~v~~~~~~~v~v~~~~~ 111 (330)
T PRK11028 43 SPDKRHLYVGVRPEFRVLSYRIADD----GA-LTFAAESP-----LPGSPTHISTDHQGR-FLFSASYNANCVSVSPLDK 111 (330)
T ss_pred CCCCCEEEEEECCCCcEEEEEECCC----Cc-eEEeeeec-----CCCCceEEEECCCCC-EEEEEEcCCCeEEEEEECC
Confidence 88999987765 5789999998631 11 10000000 222456899999999 555554 589999999975
Q ss_pred CCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCCCCEEEEEe-CCCcEEEEecCCceEEee-----
Q 009715 243 DGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVG-RDGYLRVFDYSKEQLICG----- 316 (528)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~~-~dg~i~vwd~~~~~~~~~----- 316 (528)
++...... .... +.....+++|+|+++++++++ .++.|.+||+++...+..
T Consensus 112 ~g~~~~~~----------------------~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~ 168 (330)
T PRK11028 112 DGIPVAPI----------------------QIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAE 168 (330)
T ss_pred CCCCCCce----------------------eecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCc
Confidence 43221111 1111 113466789999999886655 568999999986332211
Q ss_pred ec-ccCCCeEEEEEcCCCCEEEEEeC-CCcEEEEECCC--C--eEEEEeec------CCCCeEEEEEecCCCCCCCCCCc
Q 009715 317 GK-SYYGALLCCAWSMDGKYILTGGE-DDLVQVWSMED--R--KVVAWGEG------HNSWVSGVAFDSYWSQPNSDGTA 384 (528)
Q Consensus 317 ~~-~~~~~v~~l~~sp~g~~l~sg~~-dg~v~vwd~~~--~--~~~~~~~~------h~~~V~~v~f~p~~~~~~~dg~~ 384 (528)
.. ........++|+|+|++++++.+ ++.|.+|+++. + +.+..+.. +..+...+.|+| ||
T Consensus 169 ~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~p-------dg-- 239 (330)
T PRK11028 169 VTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITP-------DG-- 239 (330)
T ss_pred eecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECC-------CC--
Confidence 01 11234678999999999988876 89999999973 2 33333332 122445688999 98
Q ss_pred cceeEEEEEE-eCCCeEEEEEccCCe----EEEEeecCCCCCCCeecCCCCCccCCceee-eecCCCCceeeecC
Q 009715 385 ETVMYRFGSV-GQDTRLLLWDLEMDE----IVVPLRRGPLGGSPTFSTGSQSAHWDNVCP-VGTLQPAPSMRDVP 453 (528)
Q Consensus 385 ~~~~~~l~s~-s~D~~i~lwd~~~~~----~~~~~~~~~~~~~~~~s~~~~~~~~d~~~~-~g~~~~~~~~~d~~ 453 (528)
++++++ ..++.|.+|++.... .+..+........+.+++++. .+. ....++.+.+|++.
T Consensus 240 ----~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~------~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 240 ----RHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGK------YLIAAGQKSHHISVYEID 304 (330)
T ss_pred ----CEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCC------EEEEEEccCCcEEEEEEc
Confidence 556665 457899999996543 223332223345667777762 232 23335667777653
No 211
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.56 E-value=1.3e-12 Score=137.75 Aligned_cols=218 Identities=16% Similarity=0.172 Sum_probs=151.3
Q ss_pred CCCCCeEEEEecCCcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCC
Q 009715 165 AKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDG 244 (528)
Q Consensus 165 ~~~~~~l~~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~ 244 (528)
.+++.++++|+.||+|++||++....+ .........+.. ...++.++...+.++ .+|+++.||.|++.+++...
T Consensus 1058 ~~~~s~FvsgS~DGtVKvW~~~k~~~~-~~s~rS~ltys~----~~sr~~~vt~~~~~~-~~Av~t~DG~v~~~~id~~~ 1131 (1431)
T KOG1240|consen 1058 SEHTSLFVSGSDDGTVKVWNLRKLEGE-GGSARSELTYSP----EGSRVEKVTMCGNGD-QFAVSTKDGSVRVLRIDHYN 1131 (1431)
T ss_pred CCCCceEEEecCCceEEEeeehhhhcC-cceeeeeEEEec----cCCceEEEEeccCCC-eEEEEcCCCeEEEEEccccc
Confidence 556689999999999999999863222 111111222222 467899999999999 89999999999999998521
Q ss_pred CCCCccccccccceeEEeccCCCCCCCeEEEeec-CCC-eEEEEECC-CCC-EEEEEeCCCcEEEEecCCceEEeeecc-
Q 009715 245 AGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHIC-QGS-INSIAFST-DGT-YLATVGRDGYLRVFDYSKEQLICGGKS- 319 (528)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~-v~~l~~sp-dg~-~l~s~~~dg~i~vwd~~~~~~~~~~~~- 319 (528)
........ .+.-+.+ .+. |..-+|.. ... .|+.+...+.|..||++....+..++.
T Consensus 1132 ~~~~~~~~-------------------~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~ 1192 (1431)
T KOG1240|consen 1132 VSKRVATQ-------------------VRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQ 1192 (1431)
T ss_pred cccceeee-------------------eecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcC
Confidence 11111000 0000001 122 22333433 333 788888999999999987665544432
Q ss_pred -cCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEee-cCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEe-C
Q 009715 320 -YYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGE-GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVG-Q 396 (528)
Q Consensus 320 -~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~~~~~~~-~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s-~ 396 (528)
..+.|++++.+|.+.++++|...|.+.+||++-+.++..++ ++..+++.|..+|.... +. ..+.+++ .
T Consensus 1193 ~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~---~S------~~vs~~~~~ 1263 (1431)
T KOG1240|consen 1193 LRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQ---ES------VSVSAGSSS 1263 (1431)
T ss_pred ccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCC---Cc------eEEEecccC
Confidence 34789999999999999999999999999999999887776 56688999998883111 11 3444444 5
Q ss_pred CCeEEEEEccCCeEEEEeec
Q 009715 397 DTRLLLWDLEMDEIVVPLRR 416 (528)
Q Consensus 397 D~~i~lwd~~~~~~~~~~~~ 416 (528)
.+.|.+|++.++.+...+..
T Consensus 1264 ~nevs~wn~~~g~~~~vl~~ 1283 (1431)
T KOG1240|consen 1264 NNEVSTWNMETGLRQTVLWA 1283 (1431)
T ss_pred CCceeeeecccCcceEEEEc
Confidence 78899999999988777765
No 212
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.53 E-value=3.3e-12 Score=118.31 Aligned_cols=195 Identities=15% Similarity=0.236 Sum_probs=134.6
Q ss_pred CCCCeEEEEecCCcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCC
Q 009715 166 KDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGA 245 (528)
Q Consensus 166 ~~~~~l~~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~ 245 (528)
+.-..++++..|-.|++||-.... ...+. ...+..|+|++|-|.+...|++|+.. -|.+|..+....
T Consensus 108 qH~~~fava~nddvVriy~ksst~-------pt~Lk-----s~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln 174 (445)
T KOG2139|consen 108 QHIIAFAVATNDDVVRIYDKSSTC-------PTKLK-----SVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLN 174 (445)
T ss_pred hhhhhhhhhccCcEEEEeccCCCC-------Cceec-----chhhcceeEEEeccCCcceeeeeecc-eeEEEEcCcccc
Confidence 334456788899999999865411 11110 11456799999999988788888875 578999875333
Q ss_pred CCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCCCCEEEEEe-CCCcEEEEecCCceEEeeecccCCCe
Q 009715 246 GDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVG-RDGYLRVFDYSKEQLICGGKSYYGAL 324 (528)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~v 324 (528)
......... .....+....+| ..|++++|.+||..+++++ .|..|+|||.++++.+.....-.+.+
T Consensus 175 ~~r~~~~~s------------~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~ 241 (445)
T KOG2139|consen 175 ANRNIRMMS------------THHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGF 241 (445)
T ss_pred ccccccccc------------ccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCce
Confidence 222111000 001122233344 7899999999999999987 46789999999998776553345778
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCC-CeEEEEeecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCe
Q 009715 325 LCCAWSMDGKYILTGGEDDLVQVWSMED-RKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTR 399 (528)
Q Consensus 325 ~~l~~sp~g~~l~sg~~dg~v~vwd~~~-~~~~~~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~ 399 (528)
.-+.||||+.+|+.+.-|+..++|+... ....+... -.+.|...+|+| +|. .+|++++..-.
T Consensus 242 slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~l-gsgrvqtacWsp-------cGs-----fLLf~~sgsp~ 304 (445)
T KOG2139|consen 242 SLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWIL-GSGRVQTACWSP-------CGS-----FLLFACSGSPR 304 (445)
T ss_pred eeEEEcCCCCEEEEecccceeeeehhcccceecceec-cCCceeeeeecC-------CCC-----EEEEEEcCCce
Confidence 8899999999999999999999996544 34444444 344899999999 883 45666654443
No 213
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.52 E-value=1.7e-14 Score=145.97 Aligned_cols=119 Identities=17% Similarity=0.252 Sum_probs=104.7
Q ss_pred eccCCcccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCC
Q 009715 202 YNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGS 281 (528)
Q Consensus 202 ~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 281 (528)
+.+...+|...|.|+.|...|. ++++|+.|..|+||...+ ...+....+|.+.
T Consensus 182 ~ikrLlgH~naVyca~fDrtg~-~Iitgsdd~lvKiwS~et--------------------------~~~lAs~rGhs~d 234 (1113)
T KOG0644|consen 182 NIKRLLGHRNAVYCAIFDRTGR-YIITGSDDRLVKIWSMET--------------------------ARCLASCRGHSGD 234 (1113)
T ss_pred HHHHHHhhhhheeeeeeccccc-eEeecCccceeeeeeccc--------------------------hhhhccCCCCccc
Confidence 3444456999999999999999 999999999999999764 2455667889999
Q ss_pred eEEEEECCCCCEEEEEeCCCcEEEEecCCceEEeeecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 009715 282 INSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSME 351 (528)
Q Consensus 282 v~~l~~spdg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~ 351 (528)
|+.++.+.+..++++++.|..|++|.+.++.++..+.+|.+.|++|+|+|.. +.+.||++++||.+
T Consensus 235 itdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r 300 (1113)
T KOG0644|consen 235 ITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDAR 300 (1113)
T ss_pred cchhccchhhhhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCccc----cCCCCCceEecccc
Confidence 9999999999999999999999999999999999999999999999999965 66778888888865
No 214
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=2.4e-12 Score=131.83 Aligned_cols=211 Identities=14% Similarity=0.062 Sum_probs=133.8
Q ss_pred EEeecCCCeEEEEECCCCCEEEEEeCC---CcEEEEecCCceE--EeeecccCCCeEEEEEcCCCCEEEEEe-CCCcEEE
Q 009715 274 RWHICQGSINSIAFSTDGTYLATVGRD---GYLRVFDYSKEQL--ICGGKSYYGALLCCAWSMDGKYILTGG-EDDLVQV 347 (528)
Q Consensus 274 ~~~~h~~~v~~l~~spdg~~l~s~~~d---g~i~vwd~~~~~~--~~~~~~~~~~v~~l~~sp~g~~l~sg~-~dg~v~v 347 (528)
.+..|...+..++|+|||++|+..+.+ ..|++||+.+++. +..+.+ ....++|+|||+.|+.+. .++.+.|
T Consensus 198 ~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g---~~~~~~wSPDG~~La~~~~~~g~~~I 274 (429)
T PRK01742 198 IVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRG---HNGAPAFSPDGSRLAFASSKDGVLNI 274 (429)
T ss_pred EeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCC---ccCceeECCCCCEEEEEEecCCcEEE
Confidence 344556789999999999999988654 3699999988754 333333 344689999999888764 5776555
Q ss_pred E--ECCCCeEEEEeecCCCCeEEEEEecCCCCCCCCCCccceeEEEE-EEeCCCeEEEEEccCCe-EEEEeecCCCCCCC
Q 009715 348 W--SMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFG-SVGQDTRLLLWDLEMDE-IVVPLRRGPLGGSP 423 (528)
Q Consensus 348 w--d~~~~~~~~~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~-s~s~D~~i~lwd~~~~~-~~~~~~~~~~~~~~ 423 (528)
| |+.+++. ..+..+...+..+.|+| || ..|+ +...++...||++.... ....+.. .. ..+
T Consensus 275 y~~d~~~~~~-~~lt~~~~~~~~~~wSp-------DG------~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~-~~-~~~ 338 (429)
T PRK01742 275 YVMGANGGTP-SQLTSGAGNNTEPSWSP-------DG------QSILFTSDRSGSPQVYRMSASGGGASLVGG-RG-YSA 338 (429)
T ss_pred EEEECCCCCe-EeeccCCCCcCCEEECC-------CC------CEEEEEECCCCCceEEEEECCCCCeEEecC-CC-CCc
Confidence 5 6665554 44556777788999999 99 4454 44467888888875432 2222221 11 345
Q ss_pred eecCCCCCccCCceeeeecCCCCceeeecCCCCceEEeecCCCCeEEEEEeCCe--EEEEECCCeEEEEeC---CCCccc
Q 009715 424 TFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWMR---PGVAES 498 (528)
Q Consensus 424 ~~s~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~~s~d~--l~t~s~Dg~i~iW~~---~~~~~~ 498 (528)
.+++++. .+..... ..+..||+...+.......+ ....+.|+||+ |+.++.++.+++|.+ .+....
T Consensus 339 ~~SpDG~------~ia~~~~-~~i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~ 409 (429)
T PRK01742 339 QISADGK------TLVMING-DNVVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKA 409 (429)
T ss_pred cCCCCCC------EEEEEcC-CCEEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceE
Confidence 6777763 2222222 34556888776543322222 23567899985 888888988887774 343332
Q ss_pred cC-CCccce--EEEccC
Q 009715 499 QS-SSSETV--LSTSSK 512 (528)
Q Consensus 499 ~~-~~~~~v--l~~spd 512 (528)
.. .+.+.+ .+|+|-
T Consensus 410 ~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 410 RLPGSDGQVKFPAWSPY 426 (429)
T ss_pred EccCCCCCCCCcccCCC
Confidence 22 344433 677763
No 215
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.50 E-value=2.4e-13 Score=131.88 Aligned_cols=209 Identities=16% Similarity=0.205 Sum_probs=149.7
Q ss_pred CCeEEEeecCCCeEEEEECCCCCEEEEEeCCCcEEEEecCCceEEeee-cccCCCeEEEEEcC--CCCEEEEEeCCCcEE
Q 009715 270 NPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGG-KSYYGALLCCAWSM--DGKYILTGGEDDLVQ 346 (528)
Q Consensus 270 ~~~~~~~~h~~~v~~l~~spdg~~l~s~~~dg~i~vwd~~~~~~~~~~-~~~~~~v~~l~~sp--~g~~l~sg~~dg~v~ 346 (528)
..-+.+.+|++.|+|++|+.||.+|++|++|-.+.|||.-..+++..+ .+|...|.++.|-| +.+++++|..|..|+
T Consensus 41 ~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~ 120 (758)
T KOG1310|consen 41 DLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIK 120 (758)
T ss_pred chhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEE
Confidence 344567899999999999999999999999999999999888877665 46999999999999 556899999999999
Q ss_pred EEECCC----------CeEEEEeecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEEEeec
Q 009715 347 VWSMED----------RKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRR 416 (528)
Q Consensus 347 vwd~~~----------~~~~~~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~ 416 (528)
+||+.. .+..+.+..|...|..++-.| +++ ..+.++++||+|+-+|++....-..-..
T Consensus 121 lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p-------~~P-----htfwsasEDGtirQyDiREph~c~p~~~ 188 (758)
T KOG1310|consen 121 LFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAP-------NGP-----HTFWSASEDGTIRQYDIREPHVCNPDED 188 (758)
T ss_pred EEecccccccccccCccchhhhhhhhhhhhhheecCC-------CCC-----ceEEEecCCcceeeecccCCccCCcccc
Confidence 999984 234455667999999999988 663 6899999999999999987432111110
Q ss_pred C-----------CCCCCCeecCCCCCccCCceeeeecCCCCceeeecCCCC------------------ceEEee-cCC-
Q 009715 417 G-----------PLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLS------------------PLVAHR-VHT- 465 (528)
Q Consensus 417 ~-----------~~~~~~~~s~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~------------------~~~~~~-~h~- 465 (528)
. -...++++++ .....+++|..+...++||.+... .+.-+. +|-
T Consensus 189 ~~~~l~ny~~~lielk~ltisp-----~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlk 263 (758)
T KOG1310|consen 189 CPSILVNYNPQLIELKCLTISP-----SRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLK 263 (758)
T ss_pred ccHHHHHhchhhheeeeeeecC-----CCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCcccc
Confidence 0 0111223333 234556888888888888843210 111111 222
Q ss_pred -------CC---eEEEEEeCCe---EEEEECCCeEEEEeCCCCc
Q 009715 466 -------EP---LSGLIFTQES---VLTVCREGHIKIWMRPGVA 496 (528)
Q Consensus 466 -------~~---V~~l~~s~d~---l~t~s~Dg~i~iW~~~~~~ 496 (528)
.. ++-+.|+|++ |++-+. ..|+++|+..++
T Consensus 264 n~~gn~~~~~~~~t~vtfnpNGtElLvs~~g-EhVYlfdvn~~~ 306 (758)
T KOG1310|consen 264 NSQGNLDRYITCCTYVTFNPNGTELLVSWGG-EHVYLFDVNEDK 306 (758)
T ss_pred CcccccccceeeeEEEEECCCCcEEEEeeCC-eEEEEEeecCCC
Confidence 11 4567889985 444444 479999987655
No 216
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.46 E-value=4.3e-12 Score=118.77 Aligned_cols=176 Identities=17% Similarity=0.217 Sum_probs=136.4
Q ss_pred CCCCeEEEEecC--CcEEEEEccccccccccceeeeeeeccCCcc--cCCceeEEEEeeC--CCcEEEEEeCCceEEEEE
Q 009715 166 KDGHDLLIGLNS--GDVYSVSLRQQLQDVGKKLVGAHHYNKDGSV--NNSRCTSVTWVPG--GDGAFVVGHADGNLYVYE 239 (528)
Q Consensus 166 ~~~~~l~~g~~~--G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~l~~~p~--g~~~l~tg~~dg~v~vwd 239 (528)
.....+++|+.. ..+.+||+.+-.+ +-..-....+... -.-.++++.|.+. .. .||++..-+.|++||
T Consensus 159 ~~p~Iva~GGke~~n~lkiwdle~~~q-----iw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~-~fat~T~~hqvR~YD 232 (412)
T KOG3881|consen 159 TDPYIVATGGKENINELKIWDLEQSKQ-----IWSAKNVPNDRLGLRVPVWITDIRFLEGSPNY-KFATITRYHQVRLYD 232 (412)
T ss_pred CCCceEecCchhcccceeeeeccccee-----eeeccCCCCccccceeeeeeccceecCCCCCc-eEEEEecceeEEEec
Confidence 344556678888 8899999987211 1111111111111 2234668889876 44 899999999999999
Q ss_pred cCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCCCCEEEEEeCCCcEEEEecCCceEEee-ec
Q 009715 240 KSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICG-GK 318 (528)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~~~dg~i~vwd~~~~~~~~~-~~ 318 (528)
.+.+ .+|+..+..-+.+|.++...|++++|+++..-+.+..||++.++.+.. ++
T Consensus 233 t~~q-------------------------RRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~k 287 (412)
T KOG3881|consen 233 TRHQ-------------------------RRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLK 287 (412)
T ss_pred Cccc-------------------------CcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccC
Confidence 9863 467777777789999999999999999999999999999999988766 88
Q ss_pred ccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCeEEEEEec
Q 009715 319 SYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDS 373 (528)
Q Consensus 319 ~~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~v~f~p 373 (528)
+..+.|..|..+|..+++++++-|..|+|+|+++.+++.... -....++|.+.+
T Consensus 288 g~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvY-vKs~lt~il~~~ 341 (412)
T KOG3881|consen 288 GITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVY-VKSRLTFILLRD 341 (412)
T ss_pred CccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhh-hhccccEEEecC
Confidence 889999999999999999999999999999999977765543 345567777765
No 217
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.46 E-value=4.1e-11 Score=122.46 Aligned_cols=216 Identities=15% Similarity=0.117 Sum_probs=134.6
Q ss_pred cCCceeEEEEeeCCCcEEEEEe---CCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEE
Q 009715 209 NNSRCTSVTWVPGGDGAFVVGH---ADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSI 285 (528)
Q Consensus 209 h~~~v~~l~~~p~g~~~l~tg~---~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 285 (528)
+...+...+|+|||+ .|+..+ .+..|++|++..+.. . .+..+ .+.+..+
T Consensus 197 ~~~~~~~p~wSPDG~-~la~~s~~~g~~~i~i~dl~~G~~--~----------------------~l~~~---~~~~~~~ 248 (429)
T PRK03629 197 SPQPLMSPAWSPDGS-KLAYVTFESGRSALVIQTLANGAV--R----------------------QVASF---PRHNGAP 248 (429)
T ss_pred CCCceeeeEEcCCCC-EEEEEEecCCCcEEEEEECCCCCe--E----------------------EccCC---CCCcCCe
Confidence 556789999999999 565433 245789999865211 0 01111 1334468
Q ss_pred EECCCCCEEEEE-eCCC--cEEEEecCCceEEeeecccCCCeEEEEEcCCCCEEEEEeCC-Cc--EEEEECCCCeEEEEe
Q 009715 286 AFSTDGTYLATV-GRDG--YLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGED-DL--VQVWSMEDRKVVAWG 359 (528)
Q Consensus 286 ~~spdg~~l~s~-~~dg--~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~sg~~d-g~--v~vwd~~~~~~~~~~ 359 (528)
+|+|||+.|+.. ..+| .|++||+++++..... .+...+....|+|||+.|+..+.+ +. |.++|+..++.. .+
T Consensus 249 ~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt-~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~l 326 (429)
T PRK03629 249 AFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVT-DGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RI 326 (429)
T ss_pred EECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEcc-CCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-Ee
Confidence 999999988865 3444 5899999988765443 344567789999999988877654 44 555577666443 33
Q ss_pred ecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCC---CeEEEEEccCCeEEEEeecCCCCCCCeecCCCCCccCCc
Q 009715 360 EGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQD---TRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDN 436 (528)
Q Consensus 360 ~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D---~~i~lwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~d~ 436 (528)
..+...+....|+| || .+|+..+.+ ..|.+||+.+++.. .+........+.|++++.
T Consensus 327 t~~~~~~~~~~~Sp-------DG------~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~~~~~~p~~SpDG~------ 386 (429)
T PRK03629 327 TWEGSQNQDADVSS-------DG------KFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDTFLDETPSIAPNGT------ 386 (429)
T ss_pred ecCCCCccCEEECC-------CC------CEEEEEEccCCCceEEEEECCCCCeE-EeCCCCCCCCceECCCCC------
Confidence 33444566789999 99 456555433 45888999888644 343333345678888873
Q ss_pred eeeeecCCC---CceeeecCCCCceEEeecCCCCeEEEEEeC
Q 009715 437 VCPVGTLQP---APSMRDVPKLSPLVAHRVHTEPLSGLIFTQ 475 (528)
Q Consensus 437 ~~~~g~~~~---~~~~~d~~~~~~~~~~~~h~~~V~~l~~s~ 475 (528)
.+...+.++ .+.++++ .+.....+..|.+.+...+|+|
T Consensus 387 ~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 387 MVIYSSSQGMGSVLNLVST-DGRFKARLPATDGQVKFPAWSP 427 (429)
T ss_pred EEEEEEcCCCceEEEEEEC-CCCCeEECccCCCCcCCcccCC
Confidence 222222222 2333444 2334455556777777777776
No 218
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.46 E-value=3.2e-10 Score=103.73 Aligned_cols=281 Identities=14% Similarity=0.160 Sum_probs=177.7
Q ss_pred eeeCCCccEEEEeCCCcEEEEeCCCCCCC---------------CCCCCeE-EEEecC------CcEEEEEccccccccc
Q 009715 136 TNFDGKGTYIIFNVGDAIFISDLNSQDKD---------------AKDGHDL-LIGLNS------GDVYSVSLRQQLQDVG 193 (528)
Q Consensus 136 ~~~~~~g~~~~~~~~~~i~v~~~~~~~~~---------------~~~~~~l-~~g~~~------G~v~iwd~~~~~~~~~ 193 (528)
+++..|....+...+++.+|+..+.-... ...-++| ++|+.+ ..|.|||=..
T Consensus 11 vs~NQD~ScFava~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k------ 84 (346)
T KOG2111|consen 11 VSFNQDHSCFAVATDTGFRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLK------ 84 (346)
T ss_pred EEEccCCceEEEEecCceEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEeccc------
Confidence 44555666666667777777777653221 2223344 566554 4799999322
Q ss_pred cceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeE
Q 009715 194 KKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIA 273 (528)
Q Consensus 194 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (528)
+..+..+. -..+|.++.+.++ .+++.- ...|+||....+-+....+.....+
T Consensus 85 ~~~i~el~-------f~~~I~~V~l~r~---riVvvl-~~~I~VytF~~n~k~l~~~et~~NP----------------- 136 (346)
T KOG2111|consen 85 ERCIIELS-------FNSEIKAVKLRRD---RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNP----------------- 136 (346)
T ss_pred CcEEEEEE-------eccceeeEEEcCC---eEEEEe-cCeEEEEEcCCChhheeeeecccCC-----------------
Confidence 22333333 4568999999887 565555 4689999987533222222211111
Q ss_pred EEeecCCCeEEEEECC--CCCEEEEE-eCCCcEEEEecCCceE--EeeecccCCCeEEEEEcCCCCEEEEEeCCCc-EEE
Q 009715 274 RWHICQGSINSIAFST--DGTYLATV-GRDGYLRVFDYSKEQL--ICGGKSYYGALLCCAWSMDGKYILTGGEDDL-VQV 347 (528)
Q Consensus 274 ~~~~h~~~v~~l~~sp--dg~~l~s~-~~dg~i~vwd~~~~~~--~~~~~~~~~~v~~l~~sp~g~~l~sg~~dg~-v~v 347 (528)
.. -++..| +..+||.- -.-|.|.|-|+...+. ...+..|...|.|++.+.+|.++|+++..|+ |+|
T Consensus 137 ------kG--lC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRI 208 (346)
T KOG2111|consen 137 ------KG--LCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRI 208 (346)
T ss_pred ------Cc--eEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEE
Confidence 11 233344 34455553 3568999999986554 3667889999999999999999999999885 899
Q ss_pred EECCCCeEEEEeec--CCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEEEeecCCCCCCCee
Q 009715 348 WSMEDRKVVAWGEG--HNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTF 425 (528)
Q Consensus 348 wd~~~~~~~~~~~~--h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~ 425 (528)
||.++|+.+..++. ....|.+++|+| |+ .+|+..|+-|+|.|+.++....-.. ...++.+
T Consensus 209 Fdt~~g~~l~E~RRG~d~A~iy~iaFSp-------~~------s~LavsSdKgTlHiF~l~~~~~~~~-----~~SSl~~ 270 (346)
T KOG2111|consen 209 FDTEDGTLLQELRRGVDRADIYCIAFSP-------NS------SWLAVSSDKGTLHIFSLRDTENTED-----ESSSLSF 270 (346)
T ss_pred EEcCCCcEeeeeecCCchheEEEEEeCC-------Cc------cEEEEEcCCCeEEEEEeecCCCCcc-----ccccccc
Confidence 99999999988873 345799999999 88 7999999999999999876432111 0011110
Q ss_pred cCCCCCccCCceeeeecCCCCceeeecCCCCceEEeecCCCCeEEEEEeCC--eEEEEECCCeEEEEeCCC
Q 009715 426 STGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE--SVLTVCREGHIKIWMRPG 494 (528)
Q Consensus 426 s~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~~s~d--~l~t~s~Dg~i~iW~~~~ 494 (528)
+...+ .+.. .....+..++...+..--++|..+ .++..+.||.-+-+.+..
T Consensus 271 --------~~~~l--------pky~--~S~wS~~~f~l~~~~~~~~~fg~~~nsvi~i~~Dgsy~k~~f~~ 323 (346)
T KOG2111|consen 271 --------KRLVL--------PKYF--SSEWSFAKFQLPQGTQCIIAFGSETNTVIAICADGSYYKFKFDP 323 (346)
T ss_pred --------ccccc--------chhc--ccceeEEEEEccCCCcEEEEecCCCCeEEEEEeCCcEEEEEecc
Confidence 00000 0000 001122333444566667788775 589999999876666543
No 219
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.45 E-value=3.9e-11 Score=123.24 Aligned_cols=186 Identities=9% Similarity=0.048 Sum_probs=123.9
Q ss_pred EEEeecCCCeEEEEECCCCCEEEEEeC---CCcEEEEecCCceEEeeecccCCCeEEEEEcCCCCEEE-EEeCCCc--EE
Q 009715 273 ARWHICQGSINSIAFSTDGTYLATVGR---DGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYIL-TGGEDDL--VQ 346 (528)
Q Consensus 273 ~~~~~h~~~v~~l~~spdg~~l~s~~~---dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~-sg~~dg~--v~ 346 (528)
+.+..|...+.+.+|+|||+.|+..+. +..|.+||+.+++.. .+..+.+.+...+|+|||+.|+ +.+.++. |+
T Consensus 195 ~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy 273 (435)
T PRK05137 195 RYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIY 273 (435)
T ss_pred EEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCCCceEE
Confidence 334456678999999999999988763 468999999988654 3344566778899999999776 4555554 77
Q ss_pred EEECCCCeEEEEeecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEe-CCC--eEEEEEccCCeEEEEeecCCCCCCC
Q 009715 347 VWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVG-QDT--RLLLWDLEMDEIVVPLRRGPLGGSP 423 (528)
Q Consensus 347 vwd~~~~~~~~~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s-~D~--~i~lwd~~~~~~~~~~~~~~~~~~~ 423 (528)
+||+++++. ..+..+........|+| || ..|+..+ .++ .|.+||+..++... +.
T Consensus 274 ~~d~~~~~~-~~Lt~~~~~~~~~~~sp-------DG------~~i~f~s~~~g~~~Iy~~d~~g~~~~~-lt-------- 330 (435)
T PRK05137 274 TMDLRSGTT-TRLTDSPAIDTSPSYSP-------DG------SQIVFESDRSGSPQLYVMNADGSNPRR-IS-------- 330 (435)
T ss_pred EEECCCCce-EEccCCCCccCceeEcC-------CC------CEEEEEECCCCCCeEEEEECCCCCeEE-ee--------
Confidence 789887765 44555666677899999 99 5565554 333 57777766544321 11
Q ss_pred eecCCCCCccCCceeeeecCCCCceeeecCCCCceEEeecCCCCeEEEEEeCCe--EEEEECC---CeEEEEeCCCCccc
Q 009715 424 TFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCRE---GHIKIWMRPGVAES 498 (528)
Q Consensus 424 ~~s~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~~s~d~--l~t~s~D---g~i~iW~~~~~~~~ 498 (528)
.+...+....|+||+ |+..+.+ ..|.+|++.++...
T Consensus 331 ---------------------------------------~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~ 371 (435)
T PRK05137 331 ---------------------------------------FGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGER 371 (435)
T ss_pred ---------------------------------------cCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceE
Confidence 112334567788875 5554433 36888888665533
Q ss_pred cCCCc--cceEEEccCCceEEEeee
Q 009715 499 QSSSS--ETVLSTSSKDKPLLSSKV 521 (528)
Q Consensus 499 ~~~~~--~~vl~~spd~~~l~s~~~ 521 (528)
..... ..-++|+|||+.|+....
T Consensus 372 ~lt~~~~~~~p~~spDG~~i~~~~~ 396 (435)
T PRK05137 372 ILTSGFLVEGPTWAPNGRVIMFFRQ 396 (435)
T ss_pred eccCCCCCCCCeECCCCCEEEEEEc
Confidence 33222 223889999999876543
No 220
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.45 E-value=7.5e-13 Score=128.47 Aligned_cols=223 Identities=14% Similarity=0.174 Sum_probs=152.3
Q ss_pred eccCCCCCCCccccCCcccCCcccCCCCCCcceeeeCCCccEEEEeCCCcEEEEeCCCCCCC---------CCCCCeEEE
Q 009715 103 LGFGGGNGGSKSISGSSRIGSLGASSSSTSMTNTNFDGKGTYIIFNVGDAIFISDLNSQDKD---------AKDGHDLLI 173 (528)
Q Consensus 103 ~sf~gh~~~v~~v~~s~~~~~~~~s~s~~s~~~~~~~~~g~~~~~~~~~~i~v~~~~~~~~~---------~~~~~~l~~ 173 (528)
..+.||.|.|+|+.++. +|.+|+|+|. |-++++|+.-....+..+..+... ..+.+.+++
T Consensus 44 ~eL~GH~GCVN~LeWn~-dG~lL~SGSD----------D~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~s 112 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNA-DGELLASGSD----------DTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLS 112 (758)
T ss_pred hhhccccceecceeecC-CCCEEeecCC----------cceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEe
Confidence 34679999999999999 8999999996 888899987665555555554333 456778899
Q ss_pred EecCCcEEEEEcccccccc-ccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCcccc
Q 009715 174 GLNSGDVYSVSLRQQLQDV-GKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPV 252 (528)
Q Consensus 174 g~~~G~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~ 252 (528)
|..|..|+++|+....... ..... ....-...|..+|..|+-.|++++.|.++++||+|+-||++...........
T Consensus 113 gAgDk~i~lfdl~~~~~~~~d~~~~---~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~ 189 (758)
T KOG1310|consen 113 GAGDKLIKLFDLDSSKEGGMDHGME---ETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDC 189 (758)
T ss_pred ccCcceEEEEecccccccccccCcc---chhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccc
Confidence 9999999999998521110 00010 1111223489999999999999889999999999999999864332221111
Q ss_pred ccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECC-CCCEEEEEeCCCcEEEEecCC--------ce----------E
Q 009715 253 IKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST-DGTYLATVGRDGYLRVFDYSK--------EQ----------L 313 (528)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp-dg~~l~s~~~dg~i~vwd~~~--------~~----------~ 313 (528)
.... ..+...--...|+.++| +..+|++|+.|-..++||.+. +. +
T Consensus 190 ~~~l----------------~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~c 253 (758)
T KOG1310|consen 190 PSIL----------------VNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRC 253 (758)
T ss_pred cHHH----------------HHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccch
Confidence 1100 01111114567999999 678999999999999999431 11 1
Q ss_pred Eeeec-ccC--------CC---eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE
Q 009715 314 ICGGK-SYY--------GA---LLCCAWSMDGKYILTGGEDDLVQVWSMEDRKV 355 (528)
Q Consensus 314 ~~~~~-~~~--------~~---v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~~ 355 (528)
+..+. +|- .. ++-+.|+|+|.-|++.-....|+++|+..++.
T Consensus 254 v~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~ 307 (758)
T KOG1310|consen 254 VRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKS 307 (758)
T ss_pred hheecCccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCC
Confidence 11111 111 12 45578999998888777777999999987653
No 221
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.45 E-value=1.9e-13 Score=130.11 Aligned_cols=213 Identities=17% Similarity=0.220 Sum_probs=170.6
Q ss_pred CCeEEEEECCCCCEEEEEeCCCcEEEEecCCceEEeeecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEe
Q 009715 280 GSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWG 359 (528)
Q Consensus 280 ~~v~~l~~spdg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~~~~~~ 359 (528)
-..+.+.|+.+|++|+.++.-|.|-.+|..++++.+.+.. ...|..+.|-.+.+++|++ ....++|||- .|..++.+
T Consensus 130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHneq~~AVA-QK~y~yvYD~-~GtElHCl 206 (545)
T KOG1272|consen 130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLHNEQFFAVA-QKKYVYVYDN-NGTELHCL 206 (545)
T ss_pred cCCeeeeecCCccEEEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhcchHHHHhh-hhceEEEecC-CCcEEeeh
Confidence 3456799999999999999999999999999999887763 5678999999988888887 5678999995 47677777
Q ss_pred ecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEEEeecCC-CCCCCeecCCCCCccCCcee
Q 009715 360 EGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGP-LGGSPTFSTGSQSAHWDNVC 438 (528)
Q Consensus 360 ~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~d~~~ 438 (528)
+.| ..|..+.|-| .- ++|++++..|.++.-|+.+|+.+..+.... ....+.- .-++..+
T Consensus 207 k~~-~~v~rLeFLP-------yH------fLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~q------NP~NaVi 266 (545)
T KOG1272|consen 207 KRH-IRVARLEFLP-------YH------FLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQ------NPYNAVI 266 (545)
T ss_pred hhc-Cchhhhcccc-------hh------heeeecccCCceEEEeechhhhhHHHHccCCccchhhc------CCccceE
Confidence 744 5699999999 33 689999999999999999999988776532 1222222 2345677
Q ss_pred eeecCCCCceeeecCCCCceEEeecCCCCeEEEEEeCCe--EEEEECCCeEEEEeCCCCccccC---CCccceEEEccCC
Q 009715 439 PVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWMRPGVAESQS---SSSETVLSTSSKD 513 (528)
Q Consensus 439 ~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~~s~d~--l~t~s~Dg~i~iW~~~~~~~~~~---~~~~~vl~~spd~ 513 (528)
.+|...+.+.+|.-...+|+..+..|.++|.+|++.+++ ++|+|.|..++|||+..-.+... .+...-+++|..|
T Consensus 267 h~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~Sqkg 346 (545)
T KOG1272|consen 267 HLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKG 346 (545)
T ss_pred EEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCCcccccccccc
Confidence 899999999999999999999999999999999999974 99999999999999887654333 2333346666655
Q ss_pred ce
Q 009715 514 KP 515 (528)
Q Consensus 514 ~~ 515 (528)
-.
T Consensus 347 lL 348 (545)
T KOG1272|consen 347 LL 348 (545)
T ss_pred ce
Confidence 43
No 222
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.44 E-value=1.2e-11 Score=120.88 Aligned_cols=192 Identities=17% Similarity=0.238 Sum_probs=134.2
Q ss_pred cCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccccccc--cceeEEeccCCCCC---CCeEEEeecC----
Q 009715 209 NNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKD--QTQFSVAHPRYSKS---NPIARWHICQ---- 279 (528)
Q Consensus 209 h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~---~~~~~~~~h~---- 279 (528)
+....+.|..+|||++++++|..--.|++||+..- ...|..+.+ ...|.+-...+++. +.-+.+..|.
T Consensus 50 ~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanL---SLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~ 126 (703)
T KOG2321|consen 50 MPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANL---SLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGR 126 (703)
T ss_pred CccccceeEecCCCcEEEEecccCCceEEEEcccc---eeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCe
Confidence 78889999999999988999999999999998642 112222211 11111111111111 1111112221
Q ss_pred -------CCeEEEEECCCCCEEEEEeCCCcEEEEecCCceEEeeecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 009715 280 -------GSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMED 352 (528)
Q Consensus 280 -------~~v~~l~~spdg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~ 352 (528)
..-..|+++.-..-|++++....|+-++++.|..+..+....+.+++|..++...+|++|+.||.|..||.+.
T Consensus 127 hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ 206 (703)
T KOG2321|consen 127 HYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRD 206 (703)
T ss_pred eeeeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchh
Confidence 1234556654222344444556789999999999998887779999999999999999999999999999998
Q ss_pred CeEEEEeec------CCC-----CeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEEEeec
Q 009715 353 RKVVAWGEG------HNS-----WVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRR 416 (528)
Q Consensus 353 ~~~~~~~~~------h~~-----~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~ 416 (528)
...+.++.. |.. .|+++.|+. || ..++.|..+|.|.|||++..+++..-.+
T Consensus 207 ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d-------~g------L~~aVGts~G~v~iyDLRa~~pl~~kdh 268 (703)
T KOG2321|consen 207 KSRVGTLDAASSVNSHPGGDAAPSVTALKFRD-------DG------LHVAVGTSTGSVLIYDLRASKPLLVKDH 268 (703)
T ss_pred hhhheeeecccccCCCccccccCcceEEEecC-------Cc------eeEEeeccCCcEEEEEcccCCceeeccc
Confidence 776666542 333 499999997 78 8999999999999999999887654433
No 223
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.44 E-value=7.1e-11 Score=121.33 Aligned_cols=157 Identities=11% Similarity=0.055 Sum_probs=107.6
Q ss_pred cCCceeEEEEeeCCCcEEEEEe---CCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEE
Q 009715 209 NNSRCTSVTWVPGGDGAFVVGH---ADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSI 285 (528)
Q Consensus 209 h~~~v~~l~~~p~g~~~l~tg~---~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 285 (528)
|...+...+|+|||+ .|+..+ .+..|++||+..+. ...+..+.+.+...
T Consensus 200 ~~~~v~~p~wSpDG~-~lay~s~~~g~~~i~~~dl~~g~---------------------------~~~l~~~~g~~~~~ 251 (435)
T PRK05137 200 GSSLVLTPRFSPNRQ-EITYMSYANGRPRVYLLDLETGQ---------------------------RELVGNFPGMTFAP 251 (435)
T ss_pred CCCCeEeeEECCCCC-EEEEEEecCCCCEEEEEECCCCc---------------------------EEEeecCCCcccCc
Confidence 667899999999999 666554 24689999987521 11222234567788
Q ss_pred EECCCCCEEEE-EeCCCc--EEEEecCCceEEeeecccCCCeEEEEEcCCCCEEEEEeC-CC--cEEEEECCCCeEEEEe
Q 009715 286 AFSTDGTYLAT-VGRDGY--LRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGE-DD--LVQVWSMEDRKVVAWG 359 (528)
Q Consensus 286 ~~spdg~~l~s-~~~dg~--i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~sg~~-dg--~v~vwd~~~~~~~~~~ 359 (528)
+|+|||+.|+. .+.++. |.+||+.+++... +..+........|+|||+.|+..+. ++ .|++||+..++.. .+
T Consensus 252 ~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~-Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~l 329 (435)
T PRK05137 252 RFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTR-LTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RI 329 (435)
T ss_pred EECCCCCEEEEEEecCCCceEEEEECCCCceEE-ccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-Ee
Confidence 99999998764 455554 7788998776543 4445566677999999998887664 33 6888898766543 33
Q ss_pred ecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCC---CeEEEEEccCC
Q 009715 360 EGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQD---TRLLLWDLEMD 408 (528)
Q Consensus 360 ~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D---~~i~lwd~~~~ 408 (528)
..+...+....|+| || ..|+....+ ..|.+||+..+
T Consensus 330 t~~~~~~~~~~~Sp-------dG------~~ia~~~~~~~~~~i~~~d~~~~ 368 (435)
T PRK05137 330 SFGGGRYSTPVWSP-------RG------DLIAFTKQGGGQFSIGVMKPDGS 368 (435)
T ss_pred ecCCCcccCeEECC-------CC------CEEEEEEcCCCceEEEEEECCCC
Confidence 33455677789999 99 456555433 35777776544
No 224
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.43 E-value=1.4e-11 Score=113.44 Aligned_cols=328 Identities=15% Similarity=0.273 Sum_probs=200.2
Q ss_pred eccCCCCCCCccccCCcccCCcccCCCCCCcceeeeCCCccEEEEeC-CCcEEEEeCCCC--CCC-----CCCCCeEEEE
Q 009715 103 LGFGGGNGGSKSISGSSRIGSLGASSSSTSMTNTNFDGKGTYIIFNV-GDAIFISDLNSQ--DKD-----AKDGHDLLIG 174 (528)
Q Consensus 103 ~sf~gh~~~v~~v~~s~~~~~~~~s~s~~s~~~~~~~~~g~~~~~~~-~~~i~v~~~~~~--~~~-----~~~~~~l~~g 174 (528)
.-+.||.+.++....-|. ...+++.+.|-.+.+|-. +...+.-++... ... ..+...|++|
T Consensus 18 ~~~eG~~d~vn~~~l~~~-----------e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg 86 (404)
T KOG1409|consen 18 SKIEGSQDDVNAAILIPK-----------EEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVG 86 (404)
T ss_pred hhhcCchhhhhhheeccC-----------CCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEE
Confidence 446799888877666552 223344444566666532 222333333321 111 6788899999
Q ss_pred ecCCcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCcccccc
Q 009715 175 LNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIK 254 (528)
Q Consensus 175 ~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~ 254 (528)
..+|.+.-+.+.... +...+.+....|..+|..+-|+-.-+ ++++.+.|..+. |-....+.....+-..
T Consensus 87 ~~ngtvtefs~sedf--------nkm~~~r~~~~h~~~v~~~if~~~~e-~V~s~~~dk~~~-~hc~e~~~~lg~Y~~~- 155 (404)
T KOG1409|consen 87 QDNGTVTEFALSEDF--------NKMTFLKDYLAHQARVSAIVFSLTHE-WVLSTGKDKQFA-WHCTESGNRLGGYNFE- 155 (404)
T ss_pred EecceEEEEEhhhhh--------hhcchhhhhhhhhcceeeEEecCCce-eEEEeccccceE-EEeeccCCcccceEee-
Confidence 999999999876511 11334455556999999999998888 888999887764 4443322221111100
Q ss_pred ccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCCCCEEEEEeCCCcEEEEecC--CceEEeeecccCCCeEEEEEcCC
Q 009715 255 DQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYS--KEQLICGGKSYYGALLCCAWSMD 332 (528)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~~~dg~i~vwd~~--~~~~~~~~~~~~~~v~~l~~sp~ 332 (528)
....++.|.-. +...|...|.|.+..+. .-.++..+.+|.+.+.+++|.|.
T Consensus 156 -------------------------~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~ 208 (404)
T KOG1409|consen 156 -------------------------TPASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPG 208 (404)
T ss_pred -------------------------ccCCCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCC
Confidence 01111111111 44555556666655543 45678889999999999999999
Q ss_pred CCEEEEEeCCCcEEEEECCCCe-EEEEeecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEE
Q 009715 333 GKYILTGGEDDLVQVWSMEDRK-VVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIV 411 (528)
Q Consensus 333 g~~l~sg~~dg~v~vwd~~~~~-~~~~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~ 411 (528)
.+.|.+|..|..+.+||+--++ ....+.+|...|..+.+.+ -- +.+++++.|+.|.+||+......
T Consensus 209 ~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~-------~t------~~l~S~~edg~i~~w~mn~~r~e 275 (404)
T KOG1409|consen 209 QRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQ-------HT------RQLISCGEDGGIVVWNMNVKRVE 275 (404)
T ss_pred CcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhh-------hh------eeeeeccCCCeEEEEeccceeec
Confidence 9999999999999999997654 3466778999999998876 33 78999999999999998765432
Q ss_pred EEe-ecC---CCCCCCe-------------------------ecCCCCCccCCceeeeecCCC--------CceeeecCC
Q 009715 412 VPL-RRG---PLGGSPT-------------------------FSTGSQSAHWDNVCPVGTLQP--------APSMRDVPK 454 (528)
Q Consensus 412 ~~~-~~~---~~~~~~~-------------------------~s~~~~~~~~d~~~~~g~~~~--------~~~~~d~~~ 454 (528)
.+- ... .....+. ..++.-...|. ..+.-...- ...++|.+.
T Consensus 276 tpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~-~~p~mg~e~~vR~~~~c~~~i~~~~~ 354 (404)
T KOG1409|consen 276 TPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRS-SYPTMGFEFSVRVCDSCYPTIKDEER 354 (404)
T ss_pred CccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCcccccCcc-ccccccceeEEEEecccchhhhcCCC
Confidence 210 000 0000000 00000001111 111111111 223333333
Q ss_pred CCceEEeecCCCCeEEEEEeCCe--EEEEECCCeEEEEeCCC
Q 009715 455 LSPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWMRPG 494 (528)
Q Consensus 455 ~~~~~~~~~h~~~V~~l~~s~d~--l~t~s~Dg~i~iW~~~~ 494 (528)
.|+..+..-...|+.+.+..+. |+|+|.|+.|+|||+..
T Consensus 355 -t~LA~phei~tgItamhlqetlglLvTsG~~Rvi~iwd~~~ 395 (404)
T KOG1409|consen 355 -TPLAIPHEIKTGITAMHLQETLGLLVTSGTDRVIKIWDVRS 395 (404)
T ss_pred -CccccccccccceeEEEhhhhccceeecCCceEEEEEechh
Confidence 3455554434568888888763 99999999999999865
No 225
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.43 E-value=1.5e-11 Score=110.97 Aligned_cols=149 Identities=15% Similarity=0.242 Sum_probs=106.3
Q ss_pred EEEECCCCCEEEEEeC----------CCcEEEEecCC-ceEEeeecc-cCCCeEEEEEcCCCCEEEEE--eCCCcEEEEE
Q 009715 284 SIAFSTDGTYLATVGR----------DGYLRVFDYSK-EQLICGGKS-YYGALLCCAWSMDGKYILTG--GEDDLVQVWS 349 (528)
Q Consensus 284 ~l~~spdg~~l~s~~~----------dg~i~vwd~~~-~~~~~~~~~-~~~~v~~l~~sp~g~~l~sg--~~dg~v~vwd 349 (528)
.+.|+++|++|++-.. -+...+|.++. +..+..+.- ..++|.+++|+|+|+.|++. ..+..|.+||
T Consensus 10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd 89 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYD 89 (194)
T ss_pred EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEc
Confidence 6889999988776443 13345555522 223333322 34579999999999987654 4577999999
Q ss_pred CCCCeEEEEeecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeC---CCeEEEEEccCCeEEEEeecCCCCCCCeec
Q 009715 350 MEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQ---DTRLLLWDLEMDEIVVPLRRGPLGGSPTFS 426 (528)
Q Consensus 350 ~~~~~~~~~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~---D~~i~lwd~~~~~~~~~~~~~~~~~~~~~s 426 (528)
++ ++.+..+. ...++.|.|+| +| ++|+.++. .|.|.+||+++.+.+....+
T Consensus 90 ~~-~~~i~~~~--~~~~n~i~wsP-------~G------~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~---------- 143 (194)
T PF08662_consen 90 VK-GKKIFSFG--TQPRNTISWSP-------DG------RFLVLAGFGNLNGDLEFWDVRKKKKISTFEH---------- 143 (194)
T ss_pred Cc-ccEeEeec--CCCceEEEECC-------CC------CEEEEEEccCCCcEEEEEECCCCEEeecccc----------
Confidence 97 66666663 56788999999 99 67887764 46799999997776644332
Q ss_pred CCCCCccCCceeeeecCCCCceeeecCCCCceEEeecCCCCeEEEEEeCCe--EEEEE------CCCeEEEEeCCCCcc
Q 009715 427 TGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVC------REGHIKIWMRPGVAE 497 (528)
Q Consensus 427 ~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~~s~d~--l~t~s------~Dg~i~iW~~~~~~~ 497 (528)
..++.++|+||+ |+++. .|..++||++.+...
T Consensus 144 ---------------------------------------~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~~l 183 (194)
T PF08662_consen 144 ---------------------------------------SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGRLL 183 (194)
T ss_pred ---------------------------------------CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCeEe
Confidence 336899999985 66665 388999999987653
No 226
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.42 E-value=1.5e-11 Score=128.26 Aligned_cols=252 Identities=18% Similarity=0.248 Sum_probs=174.5
Q ss_pred cEEEEeCCCcEEEEeCCCCCCC-----------C-------CCCCeEEEEecCCcEEEEEccccccccccceeeeeeecc
Q 009715 143 TYIIFNVGDAIFISDLNSQDKD-----------A-------KDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNK 204 (528)
Q Consensus 143 ~~~~~~~~~~i~v~~~~~~~~~-----------~-------~~~~~l~~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~ 204 (528)
.+++...+..+.++|+..+... + -.+..++.+...+.++.-+...+. .+.
T Consensus 18 ~~llag~gp~i~~yd~~s~~li~~~~~~~~~~~H~~e~~~~l~~~~~v~~~~~~~v~~~~~~~~~----------~~~-- 85 (967)
T KOG0974|consen 18 DYLLAGSGPEILVYDLSSGCLIRHLIQSKILEVHRGEGKVKLLSGKIVTCAKSDEVYVKEASNQI----------IER-- 85 (967)
T ss_pred ceeeecCCCceEEeeCCchhHhhhhhhhcccccccccccceeccceEEEEEeecceeecchhhhh----------hhh--
Confidence 5666666677777777665333 2 345566667766666655544311 111
Q ss_pred CCcccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEE
Q 009715 205 DGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINS 284 (528)
Q Consensus 205 ~~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 284 (528)
-...|....+.-+.. .++.+..+..+.+||.... ......+. ... ..+ -...-
T Consensus 86 ----~s~wi~g~~l~~e~k-~i~l~~~~ns~~i~d~~~~-~~~~~i~~---~er--------------~~l----~~~~~ 138 (967)
T KOG0974|consen 86 ----FSDWIFGAKLFEENK-KIALVTSRNSLLIRDSKNS-SVLSKIQS---DER--------------CTL----YSSLI 138 (967)
T ss_pred ----ccccccccchhhhcc-eEEEEEcCceEEEEecccC-ceehhcCC---Cce--------------EEE----EeEEE
Confidence 122333345555666 7888888999999998642 21111111 000 000 12223
Q ss_pred EEECCCCCEEEEEeCCCcEEEEecCCceEEeeecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEE-EeecCC
Q 009715 285 IAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVA-WGEGHN 363 (528)
Q Consensus 285 l~~spdg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~~~~-~~~~h~ 363 (528)
+-++++.-++++|+.-+.|.+|+....+.-..+.+|.+.|..+.|+-||+++++.++|..+++|++++++... ...+|.
T Consensus 139 ~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHs 218 (967)
T KOG0974|consen 139 IGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHS 218 (967)
T ss_pred EeccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCccccccc
Confidence 4556677799999999999999997333333578999999999999999999999999999999999987765 677899
Q ss_pred CCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEEEeecCCCCCCCeecCCCCCccCCceeeeecC
Q 009715 364 SWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTL 443 (528)
Q Consensus 364 ~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~d~~~~~g~~ 443 (528)
..|..++|.| ..+++++.|.++++|+....+..
T Consensus 219 aRvw~~~~~~---------------n~i~t~gedctcrvW~~~~~~l~-------------------------------- 251 (967)
T KOG0974|consen 219 ARVWACCFLP---------------NRIITVGEDCTCRVWGVNGTQLE-------------------------------- 251 (967)
T ss_pred ceeEEEEecc---------------ceeEEeccceEEEEEecccceeh--------------------------------
Confidence 9999999998 57999999999999964432211
Q ss_pred CCCceeeecCCCCceEEeecCC-CCeEEEEEeCCe--EEEEECCCeEEEEeCCCCc
Q 009715 444 QPAPSMRDVPKLSPLVAHRVHT-EPLSGLIFTQES--VLTVCREGHIKIWMRPGVA 496 (528)
Q Consensus 444 ~~~~~~~d~~~~~~~~~~~~h~-~~V~~l~~s~d~--l~t~s~Dg~i~iW~~~~~~ 496 (528)
.+.+|. ..|..++..++. ++|++.|+.+++|++....
T Consensus 252 ----------------~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~ 291 (967)
T KOG0974|consen 252 ----------------VYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRG 291 (967)
T ss_pred ----------------hhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhccc
Confidence 223343 358888888864 8999999999999976543
No 227
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.41 E-value=1.9e-11 Score=119.59 Aligned_cols=195 Identities=14% Similarity=0.210 Sum_probs=147.9
Q ss_pred CCCCCeEEEEecCCcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCC
Q 009715 165 AKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDG 244 (528)
Q Consensus 165 ~~~~~~l~~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~ 244 (528)
+.-...|+++...-.||-+|+++ .+|...+....+.+++|..++... +|++|+.||.|..||.+...
T Consensus 142 ~~~scDly~~gsg~evYRlNLEq------------GrfL~P~~~~~~~lN~v~in~~hg-Lla~Gt~~g~VEfwDpR~ks 208 (703)
T KOG2321|consen 142 HKPSCDLYLVGSGSEVYRLNLEQ------------GRFLNPFETDSGELNVVSINEEHG-LLACGTEDGVVEFWDPRDKS 208 (703)
T ss_pred cCCCccEEEeecCcceEEEEccc------------cccccccccccccceeeeecCccc-eEEecccCceEEEecchhhh
Confidence 55566787888878999999988 667777777789999999999988 99999999999999987522
Q ss_pred CCCCccccccccceeEEeccCCCCCCCeEEEeec-----CCCeEEEEECCCCCEEEEEeCCCcEEEEecCCceEEeeec-
Q 009715 245 AGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHIC-----QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGK- 318 (528)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-----~~~v~~l~~spdg~~l~s~~~dg~i~vwd~~~~~~~~~~~- 318 (528)
.... +.. ......| ...|+++.|+.+|-.+++|+.+|.+.|||+++.+++..-.
T Consensus 209 rv~~-l~~-------------------~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh 268 (703)
T KOG2321|consen 209 RVGT-LDA-------------------ASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDH 268 (703)
T ss_pred hhee-eec-------------------ccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeeccc
Confidence 1110 000 0000111 2469999999999999999999999999999888765432
Q ss_pred ccCCCeEEEEEcCC--CCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeC
Q 009715 319 SYYGALLCCAWSMD--GKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQ 396 (528)
Q Consensus 319 ~~~~~v~~l~~sp~--g~~l~sg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~ 396 (528)
.+.-+|..+.|.+. +..+++. ....++|||-.+|+....++ ....++.+|+-| ++ -+++++-.
T Consensus 269 ~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiE-pt~~lND~C~~p-------~s------Gm~f~Ane 333 (703)
T KOG2321|consen 269 GYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIE-PTSDLNDFCFVP-------GS------GMFFTANE 333 (703)
T ss_pred CCccceeeecccccCCCceEEec-chHHhhhcccccCCceeecc-ccCCcCceeeec-------CC------ceEEEecC
Confidence 23468899999875 3445554 45789999999999999888 445599999999 66 58888888
Q ss_pred CCeEEEEEccC
Q 009715 397 DTRLLLWDLEM 407 (528)
Q Consensus 397 D~~i~lwd~~~ 407 (528)
+..+..|-+..
T Consensus 334 ~~~m~~yyiP~ 344 (703)
T KOG2321|consen 334 SSKMHTYYIPS 344 (703)
T ss_pred CCcceeEEccc
Confidence 88777765543
No 228
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.41 E-value=6.4e-11 Score=121.55 Aligned_cols=178 Identities=21% Similarity=0.299 Sum_probs=117.4
Q ss_pred cCCceeEEEEeeCCCcEEEEEeC---CceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEE
Q 009715 209 NNSRCTSVTWVPGGDGAFVVGHA---DGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSI 285 (528)
Q Consensus 209 h~~~v~~l~~~p~g~~~l~tg~~---dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 285 (528)
+...+...+|+|+|+ .|+..+. +..|++|++..+.. ..+..+.+...++
T Consensus 202 ~~~~v~~p~wSpDg~-~la~~s~~~~~~~l~~~dl~~g~~---------------------------~~l~~~~g~~~~~ 253 (433)
T PRK04922 202 SAEPILSPAWSPDGK-KLAYVSFERGRSAIYVQDLATGQR---------------------------ELVASFRGINGAP 253 (433)
T ss_pred CCCccccccCCCCCC-EEEEEecCCCCcEEEEEECCCCCE---------------------------EEeccCCCCccCc
Confidence 556789999999999 6666553 34699999864211 1111112344578
Q ss_pred EECCCCCEEEE-EeCCC--cEEEEecCCceEEeeecccCCCeEEEEEcCCCCEEEEEeC-CCc--EEEEECCCCeEEEEe
Q 009715 286 AFSTDGTYLAT-VGRDG--YLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGE-DDL--VQVWSMEDRKVVAWG 359 (528)
Q Consensus 286 ~~spdg~~l~s-~~~dg--~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~sg~~-dg~--v~vwd~~~~~~~~~~ 359 (528)
+|+|||+.|+. .+.++ .|++||+.+++... +..+......++|+|||++|+..+. ++. |+++|+.+++... +
T Consensus 254 ~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~-lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-l 331 (433)
T PRK04922 254 SFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTR-LTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-L 331 (433)
T ss_pred eECCCCCEEEEEEeCCCCceEEEEECCCCCeEE-CccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-e
Confidence 99999998764 45555 59999999887543 4445555567899999998887664 444 6677777665433 2
Q ss_pred ecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCC---CeEEEEEccCCeEEEEeecCCCCCCCeecCCCC
Q 009715 360 EGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQD---TRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQ 430 (528)
Q Consensus 360 ~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D---~~i~lwd~~~~~~~~~~~~~~~~~~~~~s~~~~ 430 (528)
..+......++|+| || ..|+..+.+ ..|.+||+.+++.. .+........+.|++++.
T Consensus 332 t~~g~~~~~~~~Sp-------DG------~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~~~~~~~p~~spdG~ 391 (433)
T PRK04922 332 TFQGNYNARASVSP-------DG------KKIAMVHGSGGQYRIAVMDLSTGSVR-TLTPGSLDESPSFAPNGS 391 (433)
T ss_pred ecCCCCccCEEECC-------CC------CEEEEEECCCCceeEEEEECCCCCeE-ECCCCCCCCCceECCCCC
Confidence 22344455789999 99 455554433 26999999887765 444433455667777763
No 229
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.40 E-value=9.3e-10 Score=109.37 Aligned_cols=299 Identities=15% Similarity=0.149 Sum_probs=177.1
Q ss_pred CeEE-EEecCCcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCC
Q 009715 169 HDLL-IGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGD 247 (528)
Q Consensus 169 ~~l~-~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~ 247 (528)
++++ +-..+|.|.+.|..+. +...... . ....-..++|+|||+ ++++++.||.|.++|+.+.
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~------~~~~~i~--~----~~~~h~~~~~s~Dgr-~~yv~~rdg~vsviD~~~~---- 68 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATN------KVVARIP--T----GGAPHAGLKFSPDGR-YLYVANRDGTVSVIDLATG---- 68 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-------SEEEEEE-------STTEEEEEE-TT-SS-EEEEEETTSEEEEEETTSS----
T ss_pred cEEEEEecCCCEEEEEECCCC------eEEEEEc--C----CCCceeEEEecCCCC-EEEEEcCCCeEEEEECCcc----
Confidence 3443 4556899999998762 1111111 0 112223477999999 7888899999999999862
Q ss_pred CccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCCCCEEEEEe-CCCcEEEEecCCceEEeeeccc------
Q 009715 248 SSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVG-RDGYLRVFDYSKEQLICGGKSY------ 320 (528)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~------ 320 (528)
+.++.++.. ....++++++||++++++. ..+.+.++|.++.+.++.+...
T Consensus 69 ----------------------~~v~~i~~G-~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~ 125 (369)
T PF02239_consen 69 ----------------------KVVATIKVG-GNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDG 125 (369)
T ss_dssp ----------------------SEEEEEE-S-SEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTT
T ss_pred ----------------------cEEEEEecC-CCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccc
Confidence 233333332 3567899999999998775 6889999999999988876432
Q ss_pred -CCCeEEEEEcCCCCEEEEE-eCCCcEEEEECCCCeEEE-EeecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCC
Q 009715 321 -YGALLCCAWSMDGKYILTG-GEDDLVQVWSMEDRKVVA-WGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQD 397 (528)
Q Consensus 321 -~~~v~~l~~sp~g~~l~sg-~~dg~v~vwd~~~~~~~~-~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D 397 (528)
...+..|.-+|....++.. -+.+.|.+.|....+.+. .............|+| +++ +++++...+
T Consensus 126 ~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dp-------dgr-----y~~va~~~s 193 (369)
T PF02239_consen 126 PESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDP-------DGR-----YFLVAANGS 193 (369)
T ss_dssp S---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-T-------TSS-----EEEEEEGGG
T ss_pred cCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCc-------ccc-----eeeeccccc
Confidence 2356778888888855554 445888888987654332 2223556778899999 883 556666778
Q ss_pred CeEEEEEccCCeEEEEeecCCCC---CCCee-cCCC-C----CccCCcee-eeecCCCCceeeecCCCCceEEeecCCCC
Q 009715 398 TRLLLWDLEMDEIVVPLRRGPLG---GSPTF-STGS-Q----SAHWDNVC-PVGTLQPAPSMRDVPKLSPLVAHRVHTEP 467 (528)
Q Consensus 398 ~~i~lwd~~~~~~~~~~~~~~~~---~~~~~-s~~~-~----~~~~d~~~-~~g~~~~~~~~~d~~~~~~~~~~~~h~~~ 467 (528)
..|-++|..+++.+..+..+... ....+ .+.. . .......+ .++. ..+.++|...++.+..+.....+
T Consensus 194 n~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~--~~v~v~d~~~wkvv~~I~~~G~g 271 (369)
T PF02239_consen 194 NKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGT--DPVSVHDDYAWKVVKTIPTQGGG 271 (369)
T ss_dssp TEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE----TTT-STTTBTSEEEEEE-SSSS
T ss_pred ceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccC--CccccchhhcCeEEEEEECCCCc
Confidence 89999999999888776543111 10101 1111 0 00111111 2222 34556888888999999887777
Q ss_pred eEEEEEeCCe--EEEE----ECCCeEEEEeCCCCccccC-CCcc---ce-EEEccCCceEEEeeee
Q 009715 468 LSGLIFTQES--VLTV----CREGHIKIWMRPGVAESQS-SSSE---TV-LSTSSKDKPLLSSKVV 522 (528)
Q Consensus 468 V~~l~~s~d~--l~t~----s~Dg~i~iW~~~~~~~~~~-~~~~---~v-l~~spd~~~l~s~~~~ 522 (528)
.-+.-+|+. |... ...+.|.++|..+.+.... .... .+ +.|++||+++..+..+
T Consensus 272 -lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~ 336 (369)
T PF02239_consen 272 -LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWD 336 (369)
T ss_dssp ---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE-
T ss_pred -ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEec
Confidence 778889974 6655 4458999999988753322 1112 23 8999999999877655
No 230
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.40 E-value=6.2e-11 Score=109.97 Aligned_cols=156 Identities=17% Similarity=0.294 Sum_probs=116.3
Q ss_pred cCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEEC
Q 009715 209 NNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFS 288 (528)
Q Consensus 209 h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 288 (528)
.+..+..++|++.-. .|+++..|-.|++|+...... ..+. .-.+..|+|++|-
T Consensus 97 s~~dlr~~aWhqH~~-~fava~nddvVriy~ksst~p--t~Lk------------------------s~sQrnvtclawR 149 (445)
T KOG2139|consen 97 SEIDLRGVAWHQHII-AFAVATNDDVVRIYDKSSTCP--TKLK------------------------SVSQRNVTCLAWR 149 (445)
T ss_pred hhcceeeEeechhhh-hhhhhccCcEEEEeccCCCCC--ceec------------------------chhhcceeEEEec
Confidence 445688899999655 788999999999999764111 1110 1124679999999
Q ss_pred C-CCCEEEEEeCCCcEEEEecCCc----eE----------EeeecccCCCeEEEEEcCCCCEEEEEeC-CCcEEEEECCC
Q 009715 289 T-DGTYLATVGRDGYLRVFDYSKE----QL----------ICGGKSYYGALLCCAWSMDGKYILTGGE-DDLVQVWSMED 352 (528)
Q Consensus 289 p-dg~~l~s~~~dg~i~vwd~~~~----~~----------~~~~~~~~~~v~~l~~sp~g~~l~sg~~-dg~v~vwd~~~ 352 (528)
| .+..|++++..| |.+|..... .. +....+| .+|..++|.+||..+++++- |..|.|||..+
T Consensus 150 PlsaselavgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdt 227 (445)
T KOG2139|consen 150 PLSASELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDT 227 (445)
T ss_pred cCCcceeeeeecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCC
Confidence 9 556788887755 899987521 11 1222334 68999999999999998765 67899999999
Q ss_pred CeEEEEeecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEcc
Q 009715 353 RKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLE 406 (528)
Q Consensus 353 ~~~~~~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~ 406 (528)
+..+....---+.++-+.|+| || .+|+++.-|+..++|+..
T Consensus 228 g~~~pL~~~glgg~slLkwSP-------dg------d~lfaAt~davfrlw~e~ 268 (445)
T KOG2139|consen 228 GQKIPLIPKGLGGFSLLKWSP-------DG------DVLFAATCDAVFRLWQEN 268 (445)
T ss_pred CCcccccccCCCceeeEEEcC-------CC------CEEEEecccceeeeehhc
Confidence 877665544556788999999 99 789999999999999654
No 231
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.40 E-value=1.4e-10 Score=118.54 Aligned_cols=182 Identities=13% Similarity=0.052 Sum_probs=117.2
Q ss_pred cCCCeEEEEECCCCCEEEEEeC---CCcEEEEecCCceEEeeecccCCCeEEEEEcCCCCEEEEE-eCCC--cEEEEECC
Q 009715 278 CQGSINSIAFSTDGTYLATVGR---DGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTG-GEDD--LVQVWSME 351 (528)
Q Consensus 278 h~~~v~~l~~spdg~~l~s~~~---dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~sg-~~dg--~v~vwd~~ 351 (528)
+...+...+|+|||+.|+..+. +..|.+||+.+++.... ....+.+..+.|+|||+.|+.. ..++ .|++||++
T Consensus 197 ~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l-~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~ 275 (429)
T PRK03629 197 SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV-ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLA 275 (429)
T ss_pred CCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEc-cCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECC
Confidence 4567889999999999987642 35799999988764332 2233445568999999988864 4444 58899999
Q ss_pred CCeEEEEeecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeC-CCeEEEE--EccCCeEEEEeecCCCCCCCeecCC
Q 009715 352 DRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQ-DTRLLLW--DLEMDEIVVPLRRGPLGGSPTFSTG 428 (528)
Q Consensus 352 ~~~~~~~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~-D~~i~lw--d~~~~~~~~~~~~~~~~~~~~~s~~ 428 (528)
+++..... .+...+....|+| || ..|+..+. ++...|| |+.+++.. .+.
T Consensus 276 tg~~~~lt-~~~~~~~~~~wSP-------DG------~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt------------- 327 (429)
T PRK03629 276 SGQIRQVT-DGRSNNTEPTWFP-------DS------QNLAYTSDQAGRPQVYKVNINGGAPQ-RIT------------- 327 (429)
T ss_pred CCCEEEcc-CCCCCcCceEECC-------CC------CEEEEEeCCCCCceEEEEECCCCCeE-Eee-------------
Confidence 88765443 3455678899999 99 56665554 3444444 55544322 111
Q ss_pred CCCccCCceeeeecCCCCceeeecCCCCceEEeecCCCCeEEEEEeCCe--EEEEECC---CeEEEEeCCCCccccCCC-
Q 009715 429 SQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCRE---GHIKIWMRPGVAESQSSS- 502 (528)
Q Consensus 429 ~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~~s~d~--l~t~s~D---g~i~iW~~~~~~~~~~~~- 502 (528)
.+........|+||+ |+..+.+ ..|.+||+.++.......
T Consensus 328 ----------------------------------~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~ 373 (429)
T PRK03629 328 ----------------------------------WEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDT 373 (429)
T ss_pred ----------------------------------cCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeCCC
Confidence 112234467788874 5554433 358888887765333221
Q ss_pred -ccceEEEccCCceEEEeeee
Q 009715 503 -SETVLSTSSKDKPLLSSKVV 522 (528)
Q Consensus 503 -~~~vl~~spd~~~l~s~~~~ 522 (528)
...-.+|+|||++|+.++.+
T Consensus 374 ~~~~~p~~SpDG~~i~~~s~~ 394 (429)
T PRK03629 374 FLDETPSIAPNGTMVIYSSSQ 394 (429)
T ss_pred CCCCCceECCCCCEEEEEEcC
Confidence 12237789999998877655
No 232
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.38 E-value=2.7e-10 Score=113.25 Aligned_cols=323 Identities=15% Similarity=0.145 Sum_probs=182.1
Q ss_pred CCccEEEEeCCCcEEEEeCCCCCC------CCCCCCeEEEEecCCcEEEEEccccccccccceeeeeeeccCCcccCCce
Q 009715 140 GKGTYIIFNVGDAIFISDLNSQDK------DAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRC 213 (528)
Q Consensus 140 ~~g~~~~~~~~~~i~v~~~~~~~~------~~~~~~~l~~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 213 (528)
.++.+.+.+......+..++.+.. .++|++++++...||.|.++|+.+.. .+.... -....
T Consensus 14 ~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~------~v~~i~-------~G~~~ 80 (369)
T PF02239_consen 14 GSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGK------VVATIK-------VGGNP 80 (369)
T ss_dssp GGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSS------EEEEEE--------SSEE
T ss_pred CCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCccc------EEEEEe-------cCCCc
Confidence 456667776655443434433211 17999999999999999999998721 222222 33456
Q ss_pred eEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEee-------cCCCeEEEE
Q 009715 214 TSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHI-------CQGSINSIA 286 (528)
Q Consensus 214 ~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------h~~~v~~l~ 286 (528)
..+++++||+.++++...++.+.|+|..+. ++++.+.. ....+..|.
T Consensus 81 ~~i~~s~DG~~~~v~n~~~~~v~v~D~~tl--------------------------e~v~~I~~~~~~~~~~~~Rv~aIv 134 (369)
T PF02239_consen 81 RGIAVSPDGKYVYVANYEPGTVSVIDAETL--------------------------EPVKTIPTGGMPVDGPESRVAAIV 134 (369)
T ss_dssp EEEEE--TTTEEEEEEEETTEEEEEETTT----------------------------EEEEEE--EE-TTTS---EEEEE
T ss_pred ceEEEcCCCCEEEEEecCCCceeEeccccc--------------------------cceeecccccccccccCCCceeEE
Confidence 889999999944445567899999998752 12222211 134677888
Q ss_pred ECCCCCEEEEEeC-CCcEEEEecCCceEEe-eecccCCCeEEEEEcCCCCEEEEE-eCCCcEEEEECCCCeEEEEee---
Q 009715 287 FSTDGTYLATVGR-DGYLRVFDYSKEQLIC-GGKSYYGALLCCAWSMDGKYILTG-GEDDLVQVWSMEDRKVVAWGE--- 360 (528)
Q Consensus 287 ~spdg~~l~s~~~-dg~i~vwd~~~~~~~~-~~~~~~~~v~~l~~sp~g~~l~sg-~~dg~v~vwd~~~~~~~~~~~--- 360 (528)
.+|....++..-. .+.|.+.|+...+.+. ....-........|+|+++|++.+ ..++.|-++|.++++.+..+.
T Consensus 135 ~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~ 214 (369)
T PF02239_consen 135 ASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGK 214 (369)
T ss_dssp E-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SS
T ss_pred ecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccc
Confidence 8888776665555 4888888987654332 222234567789999999987664 557799999999998776654
Q ss_pred -cCCCCeEEEEEecC----CCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEEEeecCCCCCCCeecCCCCCccCC
Q 009715 361 -GHNSWVSGVAFDSY----WSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWD 435 (528)
Q Consensus 361 -~h~~~V~~v~f~p~----~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~d 435 (528)
.|...+..+- +|- |.. .+.+ ...++.-....+.+||....+.++.+........+..++++.-.--+
T Consensus 215 ~p~~~~~~~~p-hp~~g~vw~~---~~~~----~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd 286 (369)
T PF02239_consen 215 KPHPGPGANFP-HPGFGPVWAT---SGLG----YFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVD 286 (369)
T ss_dssp SBEETTEEEEE-ETTTEEEEEE---EBSS----SSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE
T ss_pred ccccccccccc-CCCcceEEee---cccc----ceecccccCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEee
Confidence 3444444432 220 000 1100 11222222335667999999999999875544555556666311101
Q ss_pred ceeeeecCCCCceeeecCCCCceEEeecC-CCCeEEEEEeCCe---EEEEECC-CeEEEEeCCCCccccCCCccceEEEc
Q 009715 436 NVCPVGTLQPAPSMRDVPKLSPLVAHRVH-TEPLSGLIFTQES---VLTVCRE-GHIKIWMRPGVAESQSSSSETVLSTS 510 (528)
Q Consensus 436 ~~~~~g~~~~~~~~~d~~~~~~~~~~~~h-~~~V~~l~~s~d~---l~t~s~D-g~i~iW~~~~~~~~~~~~~~~vl~~s 510 (528)
. ..+.....+.++|..+.+.+..+... ...+..++|++|+ .++.-.+ +.|.++|..+.++... |-..+
T Consensus 287 ~--~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~-----i~~~t 359 (369)
T PF02239_consen 287 T--FLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKR-----IPVPT 359 (369)
T ss_dssp ---TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEE-----EE--S
T ss_pred c--cCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEE-----EEeeC
Confidence 0 11233678999999998777776532 2358999999986 3444333 3899999988654221 22446
Q ss_pred cCCceE
Q 009715 511 SKDKPL 516 (528)
Q Consensus 511 pd~~~l 516 (528)
|.|+|.
T Consensus 360 P~G~f~ 365 (369)
T PF02239_consen 360 PTGKFN 365 (369)
T ss_dssp EEEEEE
T ss_pred CCeEec
Confidence 777664
No 233
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.38 E-value=9.6e-11 Score=119.88 Aligned_cols=183 Identities=15% Similarity=0.133 Sum_probs=118.4
Q ss_pred ecCCCeEEEEECCCCCEEEEEeCC---CcEEEEecCCceEEeeecccCCCeEEEEEcCCCCEEE-EEeCCCcEEEEE--C
Q 009715 277 ICQGSINSIAFSTDGTYLATVGRD---GYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYIL-TGGEDDLVQVWS--M 350 (528)
Q Consensus 277 ~h~~~v~~l~~spdg~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~-sg~~dg~v~vwd--~ 350 (528)
.+...+.+.+|+|||+.|+..+.+ ..|.+||+.+++.... ....+.+...+|+|||+.|+ +.+.++...||. +
T Consensus 193 ~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l-~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~ 271 (427)
T PRK02889 193 SSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVV-ANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNA 271 (427)
T ss_pred cCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEe-ecCCCCccceEECCCCCEEEEEEccCCCceEEEEEC
Confidence 345678899999999999887643 3599999998876432 33345567899999999877 466777766665 4
Q ss_pred CCCeEEEEeecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEe-CCCeEEEEEcc--CCeEEEEeecCCCCCCCeecC
Q 009715 351 EDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVG-QDTRLLLWDLE--MDEIVVPLRRGPLGGSPTFST 427 (528)
Q Consensus 351 ~~~~~~~~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s-~D~~i~lwd~~--~~~~~~~~~~~~~~~~~~~s~ 427 (528)
..+. +..+..+...+....|+| || ..|+..+ .++...+|.+. .++.. .+.
T Consensus 272 ~~~~-~~~lt~~~~~~~~~~wSp-------DG------~~l~f~s~~~g~~~Iy~~~~~~g~~~-~lt------------ 324 (427)
T PRK02889 272 DGSG-LRRLTQSSGIDTEPFFSP-------DG------RSIYFTSDRGGAPQIYRMPASGGAAQ-RVT------------ 324 (427)
T ss_pred CCCC-cEECCCCCCCCcCeEEcC-------CC------CEEEEEecCCCCcEEEEEECCCCceE-EEe------------
Confidence 4444 455555666667789999 99 4555444 34666676653 22211 110
Q ss_pred CCCCccCCceeeeecCCCCceeeecCCCCceEEeecCCCCeEEEEEeCCe--EEEEECCC---eEEEEeCCCCccccCCC
Q 009715 428 GSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREG---HIKIWMRPGVAESQSSS 502 (528)
Q Consensus 428 ~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~~s~d~--l~t~s~Dg---~i~iW~~~~~~~~~~~~ 502 (528)
+ +........|+||+ |+..+.++ .|.+||+.++.......
T Consensus 325 ---------------------------------~--~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~ 369 (427)
T PRK02889 325 ---------------------------------F--TGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTD 369 (427)
T ss_pred ---------------------------------c--CCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccC
Confidence 0 11122356788875 66555443 69999988766433322
Q ss_pred c--cceEEEccCCceEEEeeee
Q 009715 503 S--ETVLSTSSKDKPLLSSKVV 522 (528)
Q Consensus 503 ~--~~vl~~spd~~~l~s~~~~ 522 (528)
. ..-.+|+|||++|+.+...
T Consensus 370 ~~~~~~p~~spdg~~l~~~~~~ 391 (427)
T PRK02889 370 TTRDESPSFAPNGRYILYATQQ 391 (427)
T ss_pred CCCccCceECCCCCEEEEEEec
Confidence 2 2237899999998876544
No 234
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.38 E-value=4.1e-09 Score=101.31 Aligned_cols=136 Identities=20% Similarity=0.287 Sum_probs=108.1
Q ss_pred cCCceeEEEEeeCCCcEEEEEeCCc-eEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEE
Q 009715 209 NNSRCTSVTWVPGGDGAFVVGHADG-NLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAF 287 (528)
Q Consensus 209 h~~~v~~l~~~p~g~~~l~tg~~dg-~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 287 (528)
|...|.-..+.-+++ -++.|..|| .+-|||.+.. .++++...-+.|.++..
T Consensus 358 ~~~~VrY~r~~~~~e-~~vigt~dgD~l~iyd~~~~---------------------------e~kr~e~~lg~I~av~v 409 (668)
T COG4946 358 KKGGVRYRRIQVDPE-GDVIGTNDGDKLGIYDKDGG---------------------------EVKRIEKDLGNIEAVKV 409 (668)
T ss_pred CCCceEEEEEccCCc-ceEEeccCCceEEEEecCCc---------------------------eEEEeeCCccceEEEEE
Confidence 666788778877777 788899998 8999998752 23333334478999999
Q ss_pred CCCCCEEEEEeCCCcEEEEecCCceEEeeecccCCCeEEEEEcCCCCEEEEEeCCC----cEEEEECCCCeEEEEeecCC
Q 009715 288 STDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDD----LVQVWSMEDRKVVAWGEGHN 363 (528)
Q Consensus 288 spdg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~sg~~dg----~v~vwd~~~~~~~~~~~~h~ 363 (528)
+++|++++.+.....|.+.|++++.....-+...+-|+.++|||+++++|-+--+| .|+++|+..++....-. ..
T Consensus 410 s~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-~t 488 (668)
T COG4946 410 SPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-PT 488 (668)
T ss_pred cCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecC-Cc
Confidence 99999999999999999999999988777777788999999999999999776555 69999999888765443 33
Q ss_pred CCeEEEEEec
Q 009715 364 SWVSGVAFDS 373 (528)
Q Consensus 364 ~~V~~v~f~p 373 (528)
..=.+-+|+|
T Consensus 489 a~DfsPaFD~ 498 (668)
T COG4946 489 AYDFSPAFDP 498 (668)
T ss_pred ccccCcccCC
Confidence 3344567887
No 235
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.38 E-value=1.1e-10 Score=119.76 Aligned_cols=183 Identities=17% Similarity=0.100 Sum_probs=119.3
Q ss_pred eecCCCeEEEEECCCCCEEEEEeCC---CcEEEEecCCceEEeeecccCCCeEEEEEcCCCCEEE-EEeCCC--cEEEEE
Q 009715 276 HICQGSINSIAFSTDGTYLATVGRD---GYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYIL-TGGEDD--LVQVWS 349 (528)
Q Consensus 276 ~~h~~~v~~l~~spdg~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~-sg~~dg--~v~vwd 349 (528)
..+...+.+.+|+|||+.|+..+.+ ..|.+||+.+++.... ..+.+...++.|+|||+.|+ +.+.++ .|++||
T Consensus 200 t~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l-~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d 278 (433)
T PRK04922 200 LRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELV-ASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMD 278 (433)
T ss_pred ecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEe-ccCCCCccCceECCCCCEEEEEEeCCCCceEEEEE
Confidence 3445678899999999999988743 4699999988765432 33444556789999999776 445555 599999
Q ss_pred CCCCeEEEEeecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEe-CCCe--EEEEEccCCeEEEEeecCCCCCCCeec
Q 009715 350 MEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVG-QDTR--LLLWDLEMDEIVVPLRRGPLGGSPTFS 426 (528)
Q Consensus 350 ~~~~~~~~~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s-~D~~--i~lwd~~~~~~~~~~~~~~~~~~~~~s 426 (528)
+.+++.. .+..+......++|+| || ..|+..+ .++. |.++|+.+++... +.
T Consensus 279 ~~~g~~~-~lt~~~~~~~~~~~sp-------DG------~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt----------- 332 (433)
T PRK04922 279 LGSRQLT-RLTNHFGIDTEPTWAP-------DG------KSIYFTSDRGGRPQIYRVAASGGSAER-LT----------- 332 (433)
T ss_pred CCCCCeE-ECccCCCCccceEECC-------CC------CEEEEEECCCCCceEEEEECCCCCeEE-ee-----------
Confidence 9887654 4555655567889999 99 5565555 3444 5555655544221 10
Q ss_pred CCCCCccCCceeeeecCCCCceeeecCCCCceEEeecCCCCeEEEEEeCCe--EEEEECCC---eEEEEeCCCCccccCC
Q 009715 427 TGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREG---HIKIWMRPGVAESQSS 501 (528)
Q Consensus 427 ~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~~s~d~--l~t~s~Dg---~i~iW~~~~~~~~~~~ 501 (528)
.+......++|+||+ |+..+.++ .|.+|++.++......
T Consensus 333 ------------------------------------~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt 376 (433)
T PRK04922 333 ------------------------------------FQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTLT 376 (433)
T ss_pred ------------------------------------cCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEECC
Confidence 011223457889875 55444332 6899998776644333
Q ss_pred Ccc--ceEEEccCCceEEEeee
Q 009715 502 SSE--TVLSTSSKDKPLLSSKV 521 (528)
Q Consensus 502 ~~~--~vl~~spd~~~l~s~~~ 521 (528)
+.. .-.+|+|||++|+....
T Consensus 377 ~~~~~~~p~~spdG~~i~~~s~ 398 (433)
T PRK04922 377 PGSLDESPSFAPNGSMVLYATR 398 (433)
T ss_pred CCCCCCCceECCCCCEEEEEEe
Confidence 222 22789999998876654
No 236
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.36 E-value=2.8e-10 Score=116.50 Aligned_cols=178 Identities=19% Similarity=0.241 Sum_probs=114.1
Q ss_pred cCCceeEEEEeeCCCcEEEEEeC-C--ceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEE
Q 009715 209 NNSRCTSVTWVPGGDGAFVVGHA-D--GNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSI 285 (528)
Q Consensus 209 h~~~v~~l~~~p~g~~~l~tg~~-d--g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 285 (528)
+...+.+.+|+|+|+ .|+..+. + ..|++||+..+.. ..+....+.+...
T Consensus 194 ~~~~v~~p~wSPDG~-~la~~s~~~~~~~I~~~dl~~g~~---------------------------~~l~~~~g~~~~~ 245 (427)
T PRK02889 194 SPEPIISPAWSPDGT-KLAYVSFESKKPVVYVHDLATGRR---------------------------RVVANFKGSNSAP 245 (427)
T ss_pred CCCCcccceEcCCCC-EEEEEEccCCCcEEEEEECCCCCE---------------------------EEeecCCCCccce
Confidence 566789999999999 6665543 2 3599999875211 1111122455688
Q ss_pred EECCCCCEEEE-EeCCCcEEEEe--cCCceEEeeecccCCCeEEEEEcCCCCEEEEEeC-CCcEEEEEC--CCCeEEEEe
Q 009715 286 AFSTDGTYLAT-VGRDGYLRVFD--YSKEQLICGGKSYYGALLCCAWSMDGKYILTGGE-DDLVQVWSM--EDRKVVAWG 359 (528)
Q Consensus 286 ~~spdg~~l~s-~~~dg~i~vwd--~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~sg~~-dg~v~vwd~--~~~~~~~~~ 359 (528)
+|+|||+.|+. .+.++...||. +..++ +..+..+........|+|||++|+..+. ++...||.+ ..++... +
T Consensus 246 ~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~-l 323 (427)
T PRK02889 246 AWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQR-V 323 (427)
T ss_pred EECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEE-E
Confidence 99999998875 56777756554 55444 3444445555667899999998886654 456666654 4444322 2
Q ss_pred ecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCC---eEEEEEccCCeEEEEeecCCCCCCCeecCCCC
Q 009715 360 EGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDT---RLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQ 430 (528)
Q Consensus 360 ~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~---~i~lwd~~~~~~~~~~~~~~~~~~~~~s~~~~ 430 (528)
..+.......+|+| || .+|+..+.++ .|.+||+.+++... +........+.|++++.
T Consensus 324 t~~g~~~~~~~~Sp-------DG------~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~~~~~~~p~~spdg~ 383 (427)
T PRK02889 324 TFTGSYNTSPRISP-------DG------KLLAYISRVGGAFKLYVQDLATGQVTA-LTDTTRDESPSFAPNGR 383 (427)
T ss_pred ecCCCCcCceEECC-------CC------CEEEEEEccCCcEEEEEEECCCCCeEE-ccCCCCccCceECCCCC
Confidence 22333445678999 99 5666665443 69999998887543 33333456777888774
No 237
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.33 E-value=3.8e-09 Score=96.86 Aligned_cols=220 Identities=15% Similarity=0.198 Sum_probs=145.5
Q ss_pred ceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCC---------C-CccccccccceeEEeccC--CCCCCCeEEEeecC
Q 009715 212 RCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAG---------D-SSFPVIKDQTQFSVAHPR--YSKSNPIARWHICQ 279 (528)
Q Consensus 212 ~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~---------~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~h~ 279 (528)
....++|+.|.. -|++|..+ -.+||+.+--... . ..-..+.......++... ....+.+-+|+.+.
T Consensus 7 ~~lsvs~NQD~S-cFava~~~-Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k 84 (346)
T KOG2111|consen 7 KTLSVSFNQDHS-CFAVATDT-GFRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLK 84 (346)
T ss_pred ceeEEEEccCCc-eEEEEecC-ceEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEeccc
Confidence 455699998887 67666655 5889987641110 0 000000111111122111 13345666777653
Q ss_pred ----------CCeEEEEECCCCCEEEEEeCCCcEEEEecC-CceEEeeeccc--CCCeEEEEEcCCCCEEEE-EeCCCcE
Q 009715 280 ----------GSINSIAFSTDGTYLATVGRDGYLRVFDYS-KEQLICGGKSY--YGALLCCAWSMDGKYILT-GGEDDLV 345 (528)
Q Consensus 280 ----------~~v~~l~~spdg~~l~s~~~dg~i~vwd~~-~~~~~~~~~~~--~~~v~~l~~sp~g~~l~s-g~~dg~v 345 (528)
.+|.++.+.++ .|++.- ...|.||.+. +.+.++.+..- ...+.+++-..+..+||. |-.-|.|
T Consensus 85 ~~~i~el~f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~Gqv 161 (346)
T KOG2111|consen 85 ERCIIELSFNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQV 161 (346)
T ss_pred CcEEEEEEeccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceE
Confidence 56777777655 566664 4689999987 44555554332 233333332323345554 5557999
Q ss_pred EEEECCCCeE--EEEeecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCe-EEEEEccCCeEEEEeecCCCCCC
Q 009715 346 QVWSMEDRKV--VAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTR-LLLWDLEMDEIVVPLRRGPLGGS 422 (528)
Q Consensus 346 ~vwd~~~~~~--~~~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~-i~lwd~~~~~~~~~~~~~~~~~~ 422 (528)
+|-|+...+. ...+.+|.+.|.+++.+- +| .+++|+|..|+ |||||..+++.+.+++.+.
T Consensus 162 Qi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~-------~G------t~vATaStkGTLIRIFdt~~g~~l~E~RRG~---- 224 (346)
T KOG2111|consen 162 QIVDLASTKPNAPSIINAHDSDIACVALNL-------QG------TLVATASTKGTLIRIFDTEDGTLLQELRRGV---- 224 (346)
T ss_pred EEEEhhhcCcCCceEEEcccCceeEEEEcC-------Cc------cEEEEeccCcEEEEEEEcCCCcEeeeeecCC----
Confidence 9999987554 467889999999999998 99 89999998876 8999999999998887621
Q ss_pred CeecCCCCCccCCceeeeecCCCCceeeecCCCCceEEeecCCCCeEEEEEeCCe--EEEEECCCeEEEEeCCC
Q 009715 423 PTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWMRPG 494 (528)
Q Consensus 423 ~~~s~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~~s~d~--l~t~s~Dg~i~iW~~~~ 494 (528)
..+.|.+++|+|+. |+.+|.-|+|.|+.+..
T Consensus 225 -----------------------------------------d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 225 -----------------------------------------DRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred -----------------------------------------chheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence 24679999999984 88888889999999754
No 238
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.31 E-value=1.7e-11 Score=117.73 Aligned_cols=275 Identities=17% Similarity=0.208 Sum_probs=181.3
Q ss_pred hhhhhhcCCCCCceeeccC-CCCCCCccccCCcccC-CcccCCCCCCcceeeeCCCccEEEEeCCCcEE---EEeCCCCC
Q 009715 88 SAAAKLLGTGNGSRTLGFG-GGNGGSKSISGSSRIG-SLGASSSSTSMTNTNFDGKGTYIIFNVGDAIF---ISDLNSQD 162 (528)
Q Consensus 88 ~~~~~~~~~~~g~~~~sf~-gh~~~v~~v~~s~~~~-~~~~s~s~~s~~~~~~~~~g~~~~~~~~~~i~---v~~~~~~~ 162 (528)
.-..-+|+...++..++|. ||...|--..|-|-.+ .-+++++ .||.+..-.....-+ ...+....
T Consensus 163 D~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s----------~dgqvr~s~i~~t~~~e~t~rl~~h~ 232 (559)
T KOG1334|consen 163 DLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSS----------RDGQVRVSEILETGYVENTKRLAPHE 232 (559)
T ss_pred cceEEeehhhccCcccccccccccchhhhhccCCCCCcCceecc----------ccCceeeeeeccccceecceeccccc
Confidence 3344569999999999996 8888887677766444 2233333 344444332211111 11111111
Q ss_pred CC-------CCCCCeEEEEecCCcEEEEEccccccccccceeeeeeeccCCcccCC---ceeEEEEeeCCCcEEEEEeCC
Q 009715 163 KD-------AKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNS---RCTSVTWVPGGDGAFVVGHAD 232 (528)
Q Consensus 163 ~~-------~~~~~~l~~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~l~~~p~g~~~l~tg~~d 232 (528)
.. ....+.|++++.|+.|.-+|+++.. +..+..+.. .+.. ....|+.+|...+.|++++.|
T Consensus 233 g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~--pa~~~~cr~-------~~~~~~v~L~~Ia~~P~nt~~faVgG~d 303 (559)
T KOG1334|consen 233 GPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDV--PAEKFVCRE-------ADEKERVGLYTIAVDPRNTNEFAVGGSD 303 (559)
T ss_pred CccceeeecCCCCCcccccccccceeeeeeccCC--ccceeeeec-------cCCccceeeeeEecCCCCccccccCChh
Confidence 11 2345678889999999999998721 222222111 1233 577899999998899999999
Q ss_pred ceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCCCCEEEEEeCCCcEEEEecCC--
Q 009715 233 GNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSK-- 310 (528)
Q Consensus 233 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~~~dg~i~vwd~~~-- 310 (528)
..+++||.+.-......-. ...+ .|-.......-.|+|++|+.++.-|+++..|-.|++|.-..
T Consensus 304 qf~RvYD~R~~~~e~~n~~----~~~f----------~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~ 369 (559)
T KOG1334|consen 304 QFARVYDQRRIDKEENNGV----LDKF----------CPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGD 369 (559)
T ss_pred hhhhhhcccchhhccccch----hhhc----------CCccccccCcccceeEEecCCccceeeeecccceEEecccccc
Confidence 9999999875221110000 0000 11111111235699999998888788888888999995432
Q ss_pred c----------eEEee-ecccCC--CeEEEEE-cCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCeEEEEEecCCC
Q 009715 311 E----------QLICG-GKSYYG--ALLCCAW-SMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWS 376 (528)
Q Consensus 311 ~----------~~~~~-~~~~~~--~v~~l~~-sp~g~~l~sg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~v~f~p~~~ 376 (528)
| +.+.. +++|.. .|..+.| -|...|+++|+.-|.|.||+-.+++.++.+++-..-|+||.-+|+
T Consensus 370 G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~-- 447 (559)
T KOG1334|consen 370 GSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPH-- 447 (559)
T ss_pred CCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCC--
Confidence 2 22333 777764 4667765 678899999999999999999999999999887779999999994
Q ss_pred CCCCCCCccceeEEEEEEeCCCeEEEEEccCC
Q 009715 377 QPNSDGTAETVMYRFGSVGQDTRLLLWDLEMD 408 (528)
Q Consensus 377 ~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~ 408 (528)
. .+|++.+-|..|+||--.+.
T Consensus 448 ----~-------PvLAsSGid~DVKIWTP~~~ 468 (559)
T KOG1334|consen 448 ----L-------PVLASSGIDHDVKIWTPLTA 468 (559)
T ss_pred ----C-------chhhccCCccceeeecCCcc
Confidence 3 48999999999999986443
No 239
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.30 E-value=1.1e-09 Score=112.30 Aligned_cols=182 Identities=19% Similarity=0.174 Sum_probs=120.1
Q ss_pred cCCCeEEEEECCCCCEEEEEeCC---CcEEEEecCCceEEeeecccCCCeEEEEEcCCCCEEEE-EeCCC--cEEEEECC
Q 009715 278 CQGSINSIAFSTDGTYLATVGRD---GYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILT-GGEDD--LVQVWSME 351 (528)
Q Consensus 278 h~~~v~~l~~spdg~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s-g~~dg--~v~vwd~~ 351 (528)
+...+...+|+|||++|+.+..+ ..|++||+.+++.... ..+.+.+.+++|+|||+.|+. ...++ .|++||+.
T Consensus 188 ~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~-~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~ 266 (417)
T TIGR02800 188 SREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKV-ASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLD 266 (417)
T ss_pred CCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe-ecCCCCccceEECCCCCEEEEEECCCCCccEEEEECC
Confidence 44568889999999999987654 4799999998765433 334566777999999997764 44444 58889998
Q ss_pred CCeEEEEeecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeC-CC--eEEEEEccCCeEEEEeecCCCCCCCeecCC
Q 009715 352 DRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQ-DT--RLLLWDLEMDEIVVPLRRGPLGGSPTFSTG 428 (528)
Q Consensus 352 ~~~~~~~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~-D~--~i~lwd~~~~~~~~~~~~~~~~~~~~~s~~ 428 (528)
+++.. .+..+........|+| || ..|+..+. ++ .|.++|+.+++.. .+
T Consensus 267 ~~~~~-~l~~~~~~~~~~~~s~-------dg------~~l~~~s~~~g~~~iy~~d~~~~~~~-~l-------------- 317 (417)
T TIGR02800 267 GKQLT-RLTNGPGIDTEPSWSP-------DG------KSIAFTSDRGGSPQIYMMDADGGEVR-RL-------------- 317 (417)
T ss_pred CCCEE-ECCCCCCCCCCEEECC-------CC------CEEEEEECCCCCceEEEEECCCCCEE-Ee--------------
Confidence 77543 3444555566778999 98 45555443 33 5666676654422 11
Q ss_pred CCCccCCceeeeecCCCCceeeecCCCCceEEeecCCCCeEEEEEeCCe--EEEEECCC---eEEEEeCCCCccccCCCc
Q 009715 429 SQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREG---HIKIWMRPGVAESQSSSS 503 (528)
Q Consensus 429 ~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~~s~d~--l~t~s~Dg---~i~iW~~~~~~~~~~~~~ 503 (528)
..+...+..+.|+|++ |+.++.++ .|.+|++.++........
T Consensus 318 ---------------------------------~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~~ 364 (417)
T TIGR02800 318 ---------------------------------TFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTDT 364 (417)
T ss_pred ---------------------------------ecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccCC
Confidence 1123345567889874 66666665 788888877554333222
Q ss_pred c--ceEEEccCCceEEEeeee
Q 009715 504 E--TVLSTSSKDKPLLSSKVV 522 (528)
Q Consensus 504 ~--~vl~~spd~~~l~s~~~~ 522 (528)
. .-.+|+|||++|+.....
T Consensus 365 ~~~~~p~~spdg~~l~~~~~~ 385 (417)
T TIGR02800 365 GLDESPSFAPNGRMILYATTR 385 (417)
T ss_pred CCCCCceECCCCCEEEEEEeC
Confidence 1 226889999998876554
No 240
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.30 E-value=7.6e-11 Score=123.11 Aligned_cols=188 Identities=21% Similarity=0.300 Sum_probs=145.3
Q ss_pred CCCCCeEEEEecCCcEEEEEccccccccccceeeeeeeccCCcccCCc-----eeEEEEeeCCCcEEEEEeCCceEEEEE
Q 009715 165 AKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSR-----CTSVTWVPGGDGAFVVGHADGNLYVYE 239 (528)
Q Consensus 165 ~~~~~~l~~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~-----v~~l~~~p~g~~~l~tg~~dg~v~vwd 239 (528)
..+...++.+..+..+.+||...... +.+.. +... +.-+-++++.- ++++|+.-+.|.+|+
T Consensus 96 ~~e~k~i~l~~~~ns~~i~d~~~~~~-----------~~~i~--~~er~~l~~~~~~g~s~~~~-~i~~gsv~~~iivW~ 161 (967)
T KOG0974|consen 96 FEENKKIALVTSRNSLLIRDSKNSSV-----------LSKIQ--SDERCTLYSSLIIGDSAEEL-YIASGSVFGEIIVWK 161 (967)
T ss_pred hhhcceEEEEEcCceEEEEecccCce-----------ehhcC--CCceEEEEeEEEEeccCcEE-EEEeccccccEEEEe
Confidence 45677888899999999999765110 00100 2221 12223344444 899999999999999
Q ss_pred cCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCCCCEEEEEeCCCcEEEEecCCceEEe-eec
Q 009715 240 KSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLIC-GGK 318 (528)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~~~dg~i~vwd~~~~~~~~-~~~ 318 (528)
...+. .++ .+.+|.+.|..+.|+.||.++++.++|..+|+|++++.+... ...
T Consensus 162 ~~~dn-------------------------~p~-~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~f 215 (967)
T KOG0974|consen 162 PHEDN-------------------------KPI-RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGF 215 (967)
T ss_pred ccccC-------------------------Ccc-eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccc
Confidence 86321 122 678899999999999999999999999999999999887765 667
Q ss_pred ccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCC-CCeEEEEEecCCCCCCCCCCccceeEEEEEEeCC
Q 009715 319 SYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHN-SWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQD 397 (528)
Q Consensus 319 ~~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~~~~~~~~h~-~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D 397 (528)
+|...|..+.++|+ +++++++|-++++|+.+ ++.+..+.+|. ..+..++..+ +. ..++|++.|
T Consensus 216 gHsaRvw~~~~~~n--~i~t~gedctcrvW~~~-~~~l~~y~~h~g~~iw~~~~~~-------~~------~~~vT~g~D 279 (967)
T KOG0974|consen 216 GHSARVWACCFLPN--RIITVGEDCTCRVWGVN-GTQLEVYDEHSGKGIWKIAVPI-------GV------IIKVTGGND 279 (967)
T ss_pred cccceeEEEEeccc--eeEEeccceEEEEEecc-cceehhhhhhhhcceeEEEEcC-------Cc------eEEEeeccC
Confidence 89999999999998 89999999999999765 44455777776 4688999887 65 689999999
Q ss_pred CeEEEEEccCC
Q 009715 398 TRLLLWDLEMD 408 (528)
Q Consensus 398 ~~i~lwd~~~~ 408 (528)
+.+++||+...
T Consensus 280 s~lk~~~l~~r 290 (967)
T KOG0974|consen 280 STLKLWDLNGR 290 (967)
T ss_pred cchhhhhhhcc
Confidence 99999998654
No 241
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.29 E-value=1.7e-11 Score=123.02 Aligned_cols=247 Identities=11% Similarity=0.145 Sum_probs=170.1
Q ss_pred CCCCCeEEEEecCCcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCC
Q 009715 165 AKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDG 244 (528)
Q Consensus 165 ~~~~~~l~~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~ 244 (528)
++...+-++..+..+-.+|++.... ... ..|... +|...|+++.|+|+.+-++++++.|-.|..||++..
T Consensus 78 h~a~~~wiVsts~qkaiiwnlA~ss---~~a----Ief~lh--ghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp- 147 (1081)
T KOG0309|consen 78 HPAKPYWIVSTSNQKAIIWNLAKSS---SNA----IEFVLH--GHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSP- 147 (1081)
T ss_pred CCCCceeEEecCcchhhhhhhhcCC---ccc----eEEEEe--cCccceeccccCCCCCcceeeccccccceeeeccCC-
Confidence 7778888999998889999987511 111 222222 389999999999998879999999999999999863
Q ss_pred CCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECC-CCCEEEEEeCCCcEEEEecCCc-eEEeeecccCC
Q 009715 245 AGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST-DGTYLATVGRDGYLRVFDYSKE-QLICGGKSYYG 322 (528)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp-dg~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~ 322 (528)
..++..|..-......++|+- ++..+| .+....|++||++.+ .++..+++|..
T Consensus 148 ------------------------~~p~ys~~~w~s~asqVkwnyk~p~vla-sshg~~i~vwd~r~gs~pl~s~K~~vs 202 (1081)
T KOG0309|consen 148 ------------------------HRPFYSTSSWRSAASQVKWNYKDPNVLA-SSHGNDIFVWDLRKGSTPLCSLKGHVS 202 (1081)
T ss_pred ------------------------CcceeeeecccccCceeeecccCcchhh-hccCCceEEEeccCCCcceEEecccce
Confidence 234555544446677899987 555444 456678999999865 56788888988
Q ss_pred CeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCe--EEEEeecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCe
Q 009715 323 ALLCCAWSMD-GKYILTGGEDDLVQVWSMEDRK--VVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTR 399 (528)
Q Consensus 323 ~v~~l~~sp~-g~~l~sg~~dg~v~vwd~~~~~--~~~~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~ 399 (528)
.|+.++|..- -..+.+++.|++|+.||..... ..+.. .-..+|.--.|.|++ +| +.+.---.+..
T Consensus 203 ~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~v-tt~~piw~~r~~Pfg-----~g------~~~mp~~G~n~ 270 (1081)
T KOG0309|consen 203 SVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTV-TTNFPIWRGRYLPFG-----EG------YCIMPMVGGNM 270 (1081)
T ss_pred eeehHHHhhhhhhhhcccCCCCceeeecccccccccceec-cccCcceeccccccC-----ce------eEeccccCCee
Confidence 8999988752 3357888999999999987532 22222 245667777777743 33 22222112224
Q ss_pred EEEEEccCCeEEEEeecCCCCCCCeecCCCCCccCCceeeeecCCCCceeeec-CCCCceEEeecCCCCeEEEEEeC---
Q 009715 400 LLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDV-PKLSPLVAHRVHTEPLSGLIFTQ--- 475 (528)
Q Consensus 400 i~lwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~d~~~~~g~~~~~~~~~d~-~~~~~~~~~~~h~~~V~~l~~s~--- 475 (528)
+.+++-+... ..|.+ ...+++.++.||++.|....|..
T Consensus 271 v~~~~c~n~d--------------------------------------~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e 312 (1081)
T KOG0309|consen 271 VPQLRCENSD--------------------------------------LEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKE 312 (1081)
T ss_pred eeeccccchh--------------------------------------hhhccccCCcceeeecCcchHHHHHhhhhccc
Confidence 4443332211 11222 13468889999999998888864
Q ss_pred --------C-eEEEEECCCeEEEEeCCCCc
Q 009715 476 --------E-SVLTVCREGHIKIWMRPGVA 496 (528)
Q Consensus 476 --------d-~l~t~s~Dg~i~iW~~~~~~ 496 (528)
| .|+|=+.|.++|+|-+...-
T Consensus 313 ~~~d~d~rdfQLVTWSkD~~lrlWpI~~~i 342 (1081)
T KOG0309|consen 313 CDGDYDSRDFQLVTWSKDQTLRLWPIDSQI 342 (1081)
T ss_pred ccCCCCccceeEEEeecCCceEeeeccHHH
Confidence 1 29999999999999986543
No 242
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.28 E-value=1.5e-10 Score=106.05 Aligned_cols=168 Identities=14% Similarity=0.081 Sum_probs=113.5
Q ss_pred CCCCCeEEEEecCCcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCC
Q 009715 165 AKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDG 244 (528)
Q Consensus 165 ~~~~~~l~~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~ 244 (528)
+|+|+++++...- .+.|-|..+... ...|. --..|.-+.|..|..++|.....|+.|.+|++....
T Consensus 17 Sp~g~yiAs~~~y-rlviRd~~tlq~--------~qlf~-----cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpe 82 (447)
T KOG4497|consen 17 SPCGNYIASLSRY-RLVIRDSETLQL--------HQLFL-----CLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPE 82 (447)
T ss_pred CCCCCeeeeeeee-EEEEeccchhhH--------HHHHH-----HHHHhhheeeeccceeeeeeeeccceEEEEEeecce
Confidence 7999999988776 777777665110 00011 234688899999998777788999999999997421
Q ss_pred CCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCCCCE-EEEEeCCCcEEEEecCCceEEeeecccCCC
Q 009715 245 AGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTY-LATVGRDGYLRVFDYSKEQLICGGKSYYGA 323 (528)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spdg~~-l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~ 323 (528)
-...++..+..+..++|||||+. |.+...|-.|.+|.+.+.+....-. -...
T Consensus 83 --------------------------w~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~-pK~~ 135 (447)
T KOG4497|consen 83 --------------------------WYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPH-PKTN 135 (447)
T ss_pred --------------------------eEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecc-cccC
Confidence 11222334578899999999965 5556678899999999877654322 2344
Q ss_pred eEEEEEcCCCCEEEEEeCCCc---EEEEECCCCeEEEEeecCCCCeEEEEEec
Q 009715 324 LLCCAWSMDGKYILTGGEDDL---VQVWSMEDRKVVAWGEGHNSWVSGVAFDS 373 (528)
Q Consensus 324 v~~l~~sp~g~~l~sg~~dg~---v~vwd~~~~~~~~~~~~h~~~V~~v~f~p 373 (528)
+..++|+|||++.+..+.-.- +.|.....-..+..+.-..-..+.+.|+|
T Consensus 136 ~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsP 188 (447)
T KOG4497|consen 136 VKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSP 188 (447)
T ss_pred ceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECC
Confidence 678999999999998876422 22222222233444444455678899999
No 243
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.27 E-value=5.9e-10 Score=100.95 Aligned_cols=273 Identities=16% Similarity=0.173 Sum_probs=164.9
Q ss_pred cCCcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEee---CCCcEEEEEeCCceEEEEEcCCCCCCCCcccc
Q 009715 176 NSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVP---GGDGAFVVGHADGNLYVYEKSKDGAGDSSFPV 252 (528)
Q Consensus 176 ~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p---~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~ 252 (528)
..|.+++|++....-.+ .+.-.......+..|.|.. +|.-.++-+..+|.|.+|...... ....+.
T Consensus 44 R~Gkl~Lys~~d~~~~~---------l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~-ss~~L~- 112 (339)
T KOG0280|consen 44 RSGKLHLYSLEDMKLSP---------LDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDE-SSVHLR- 112 (339)
T ss_pred eccceEEEeecccccCc---------cceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccce-eeeeec-
Confidence 45778888876522111 1111112456678888864 333357778899999999876421 111111
Q ss_pred ccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCCCCEEEEEeCCCcEEEEecCCceEE--eeecccCCCeEEEEEc
Q 009715 253 IKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLI--CGGKSYYGALLCCAWS 330 (528)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~~~dg~i~vwd~~~~~~~--~~~~~~~~~v~~l~~s 330 (528)
++...+.......++.|++-+..++++..+|.+.+-+....... +..+.|.-......|+
T Consensus 113 ------------------~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~ 174 (339)
T KOG0280|consen 113 ------------------GLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFS 174 (339)
T ss_pred ------------------ccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecc
Confidence 11111111123568899998889999999999997776655443 3678899999989987
Q ss_pred C-CCCEEEEEeCCCcEEEEECC-CCeEEEE-eecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEcc-
Q 009715 331 M-DGKYILTGGEDDLVQVWSME-DRKVVAW-GEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLE- 406 (528)
Q Consensus 331 p-~g~~l~sg~~dg~v~vwd~~-~~~~~~~-~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~- 406 (528)
. +.+++.+|++|+.+..||++ .++.+.. .+-|...|.++.-+|. .+ ..+++|+.|-.|++||.|
T Consensus 175 ~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~------~~------~~I~TGsYDe~i~~~DtRn 242 (339)
T KOG0280|consen 175 DKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPP------KP------TYIATGSYDECIRVLDTRN 242 (339)
T ss_pred cCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCC------CC------ceEEEeccccceeeeehhc
Confidence 6 44688899999999999999 3455544 4568999999998872 44 689999999999999998
Q ss_pred CCeEEEEeecCCCCCCCeecCCCCCccCCceeeeecCCCCceeeecCC--CC---ceEEeecCCCCeEEEEEeCC-e-EE
Q 009715 407 MDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPK--LS---PLVAHRVHTEPLSGLIFTQE-S-VL 479 (528)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~d~~~~~g~~~~~~~~~d~~~--~~---~~~~~~~h~~~V~~l~~s~d-~-l~ 479 (528)
.++++..-.....+-.+...+.-. ..+...++..-..+-+... .+ .+.....|..-++.-.|... . |+
T Consensus 243 m~kPl~~~~v~GGVWRi~~~p~~~-----~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lA 317 (339)
T KOG0280|consen 243 MGKPLFKAKVGGGVWRIKHHPEIF-----HRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLA 317 (339)
T ss_pred ccCccccCccccceEEEEecchhh-----hHHHHHHHhcCceEEEecccccchheeeeccccccceeeccccccccceee
Confidence 566554332211000000000000 0011112222222222221 11 23344567777777777442 3 78
Q ss_pred EEE-CCCeEE-EEeCCC
Q 009715 480 TVC-REGHIK-IWMRPG 494 (528)
Q Consensus 480 t~s-~Dg~i~-iW~~~~ 494 (528)
||+ .|+.++ +|-.-+
T Consensus 318 TCsFYDk~~~~~Wl~~t 334 (339)
T KOG0280|consen 318 TCSFYDKKIRQLWLHIT 334 (339)
T ss_pred eeeccccceeeeeeecc
Confidence 876 787755 886443
No 244
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.25 E-value=1.3e-09 Score=107.65 Aligned_cols=197 Identities=19% Similarity=0.222 Sum_probs=149.6
Q ss_pred CCCCeEEEEecCCcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEee-------------------CCCcEE
Q 009715 166 KDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVP-------------------GGDGAF 226 (528)
Q Consensus 166 ~~~~~l~~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p-------------------~g~~~l 226 (528)
+...+++....||.+++||..... .. ..|.+... -.+.+++.+|.- .+.-++
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~-----~~---~e~~p~~~-~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~l 73 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQ-----LQ---QEFAPIAS-LSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSML 73 (541)
T ss_pred chhheEeecCCCCeEEEEEccCce-----ee---eeeccchh-ccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEE
Confidence 345678888999999999986521 11 11222111 345566666631 122267
Q ss_pred EEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEE--eecCCCeEEEEECCCCCEEEEEeCCCcEE
Q 009715 227 VVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARW--HICQGSINSIAFSTDGTYLATVGRDGYLR 304 (528)
Q Consensus 227 ~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~l~~spdg~~l~s~~~dg~i~ 304 (528)
+-|...|.|.+|++..++ ....+ ..|.+.|.++.++.+-..|.+++.|+.+.
T Consensus 74 vlgt~~g~v~~ys~~~g~--------------------------it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~ 127 (541)
T KOG4547|consen 74 VLGTPQGSVLLYSVAGGE--------------------------ITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVV 127 (541)
T ss_pred EeecCCccEEEEEecCCe--------------------------EEEEEecCCCCCcceeeecccccCceEecCCceeEE
Confidence 788899999999987521 11111 34779999999999988999999999999
Q ss_pred EEecCCceEEeeecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCeEEEEEecCCCCCCCC--C
Q 009715 305 VFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSD--G 382 (528)
Q Consensus 305 vwd~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~v~f~p~~~~~~~d--g 382 (528)
.|+...++.++..+.....+..++.+|||+.+++++ +.|++||+++++.+..|.||.++|+++.|-- + |
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~-------~~~g 198 (541)
T KOG4547|consen 128 YILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTT-------LIDG 198 (541)
T ss_pred EEecccceeeeeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEE-------eccc
Confidence 999999999999998888999999999999999987 6799999999999999999999999999976 4 2
Q ss_pred CccceeEEEEEEeCCCeEEEEEccCC
Q 009715 383 TAETVMYRFGSVGQDTRLLLWDLEMD 408 (528)
Q Consensus 383 ~~~~~~~~l~s~s~D~~i~lwd~~~~ 408 (528)
....++|.+...+.-+.+|-++..
T Consensus 199 --~~G~~vLssa~~~r~i~~w~v~~~ 222 (541)
T KOG4547|consen 199 --IIGKYVLSSAAAERGITVWVVEKE 222 (541)
T ss_pred --cccceeeeccccccceeEEEEEcc
Confidence 111156666677888889977653
No 245
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.23 E-value=7.8e-08 Score=95.62 Aligned_cols=267 Identities=15% Similarity=0.173 Sum_probs=162.8
Q ss_pred EEEEecC----CcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeC----CceEEEEEcCC
Q 009715 171 LLIGLNS----GDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHA----DGNLYVYEKSK 242 (528)
Q Consensus 171 l~~g~~~----G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~----dg~v~vwd~~~ 242 (528)
+++|+.+ +.|++|++..... .+.....+. .......++++|+++ +|++... +|.|..|++..
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g----~l~~~~~~~-----~~~~Ps~l~~~~~~~-~LY~~~e~~~~~g~v~~~~i~~ 71 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETG----TLTLVQTVA-----EGENPSWLAVSPDGR-RLYVVNEGSGDSGGVSSYRIDP 71 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTT----EEEEEEEEE-----ESSSECCEEE-TTSS-EEEEEETTSSTTTEEEEEEEET
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCC----CceEeeeec-----CCCCCceEEEEeCCC-EEEEEEccccCCCCEEEEEECC
Confidence 5666665 7899998844211 111111111 334566789999999 7777665 57999999876
Q ss_pred CCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCCCCEEEEEe-CCCcEEEEecCC-ceEEee---e
Q 009715 243 DGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVG-RDGYLRVFDYSK-EQLICG---G 317 (528)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~~-~dg~i~vwd~~~-~~~~~~---~ 317 (528)
+... ...+............++++|++++|+++. .+|.|.++++.. +.+... +
T Consensus 72 ~~g~----------------------L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~ 129 (345)
T PF10282_consen 72 DTGT----------------------LTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTV 129 (345)
T ss_dssp TTTE----------------------EEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEE
T ss_pred Ccce----------------------eEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeec
Confidence 4111 111222222235566799999999999987 588999999986 433222 1
Q ss_pred c----------ccCCCeEEEEEcCCCCEEEEEeC-CCcEEEEECCCCe--E--EEEee-cCCCCeEEEEEecCCCCCCCC
Q 009715 318 K----------SYYGALLCCAWSMDGKYILTGGE-DDLVQVWSMEDRK--V--VAWGE-GHNSWVSGVAFDSYWSQPNSD 381 (528)
Q Consensus 318 ~----------~~~~~v~~l~~sp~g~~l~sg~~-dg~v~vwd~~~~~--~--~~~~~-~h~~~V~~v~f~p~~~~~~~d 381 (528)
. .......++.++|+++++++... ...|.+|+++... . ...+. ........++|+| |
T Consensus 130 ~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~p-------d 202 (345)
T PF10282_consen 130 RHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSP-------D 202 (345)
T ss_dssp ESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-T-------T
T ss_pred ccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcC-------C
Confidence 1 11245789999999998887643 5589999997754 2 12222 3456688999999 8
Q ss_pred CCccceeEEEEEEeCCCeEEEEEcc--CCeEE--EEeecCCCCCCCeecCCCCCccCCceeeeecCCCCceeeecCCCCc
Q 009715 382 GTAETVMYRFGSVGQDTRLLLWDLE--MDEIV--VPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSP 457 (528)
Q Consensus 382 g~~~~~~~~l~s~s~D~~i~lwd~~--~~~~~--~~~~~~~~~~~~~~s~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~ 457 (528)
|+ ++++..-.++.|.++++. .+... ..+...+.
T Consensus 203 g~-----~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~-------------------------------------- 239 (345)
T PF10282_consen 203 GK-----YAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPE-------------------------------------- 239 (345)
T ss_dssp SS-----EEEEEETTTTEEEEEEEETTTTEEEEEEEEESCET--------------------------------------
T ss_pred cC-----EEEEecCCCCcEEEEeecccCCceeEEEEeeeccc--------------------------------------
Confidence 83 455666788999999998 44221 11111000
Q ss_pred eEEeecCCCCeEEEEEeCCe---EEEEECCCeEEEEeCCC--CccccC------CCccceEEEccCCceEEEeeee
Q 009715 458 LVAHRVHTEPLSGLIFTQES---VLTVCREGHIKIWMRPG--VAESQS------SSSETVLSTSSKDKPLLSSKVV 522 (528)
Q Consensus 458 ~~~~~~h~~~V~~l~~s~d~---l~t~s~Dg~i~iW~~~~--~~~~~~------~~~~~vl~~spd~~~l~s~~~~ 522 (528)
.. ........|+++||+ +++...++.|.++++.. +..... +..+.-++++|||++|++++..
T Consensus 240 --~~-~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~ 312 (345)
T PF10282_consen 240 --GF-TGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQD 312 (345)
T ss_dssp --TS-CSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETT
T ss_pred --cc-cccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecC
Confidence 00 011257889999985 45555778999999943 222111 2223338999999999988755
No 246
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.23 E-value=7.2e-09 Score=106.28 Aligned_cols=177 Identities=21% Similarity=0.269 Sum_probs=117.6
Q ss_pred cCCceeEEEEeeCCCcEEEEEeCC---ceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEE
Q 009715 209 NNSRCTSVTWVPGGDGAFVVGHAD---GNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSI 285 (528)
Q Consensus 209 h~~~v~~l~~~p~g~~~l~tg~~d---g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 285 (528)
+...+...+|+|+|+ +|+....+ ..|++|++.++. ...+..+.+.+.++
T Consensus 188 ~~~~~~~p~~Spdg~-~la~~~~~~~~~~i~v~d~~~g~---------------------------~~~~~~~~~~~~~~ 239 (417)
T TIGR02800 188 SREPILSPAWSPDGQ-KLAYVSFESGKPEIYVQDLATGQ---------------------------REKVASFPGMNGAP 239 (417)
T ss_pred CCCceecccCCCCCC-EEEEEEcCCCCcEEEEEECCCCC---------------------------EEEeecCCCCccce
Confidence 445688899999999 66665533 479999987521 11122233556678
Q ss_pred EECCCCCEEEEE-eCCC--cEEEEecCCceEEeeecccCCCeEEEEEcCCCCEEEEEeC-CC--cEEEEECCCCeEEEEe
Q 009715 286 AFSTDGTYLATV-GRDG--YLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGE-DD--LVQVWSMEDRKVVAWG 359 (528)
Q Consensus 286 ~~spdg~~l~s~-~~dg--~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~sg~~-dg--~v~vwd~~~~~~~~~~ 359 (528)
+|+|||+.|+.. +.++ .|++||+.+++... +..+........|+|||++|+..+. ++ .|+++|+.+++.. .+
T Consensus 240 ~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l 317 (417)
T TIGR02800 240 AFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTR-LTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RL 317 (417)
T ss_pred EECCCCCEEEEEECCCCCccEEEEECCCCCEEE-CCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-Ee
Confidence 999999977654 4443 58999998776543 3334444557799999998876654 33 5888888876643 34
Q ss_pred ecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCC---eEEEEEccCCeEEEEeecCCCCCCCeecCCC
Q 009715 360 EGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDT---RLLLWDLEMDEIVVPLRRGPLGGSPTFSTGS 429 (528)
Q Consensus 360 ~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~---~i~lwd~~~~~~~~~~~~~~~~~~~~~s~~~ 429 (528)
..+...+..+.|+| || .+++.++.++ .|.+||+.++... .+........+.|++++
T Consensus 318 ~~~~~~~~~~~~sp-------dg------~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~p~~spdg 376 (417)
T TIGR02800 318 TFRGGYNASPSWSP-------DG------DLIAFVHREGGGFNIAVMDLDGGGER-VLTDTGLDESPSFAPNG 376 (417)
T ss_pred ecCCCCccCeEECC-------CC------CEEEEEEccCCceEEEEEeCCCCCeE-EccCCCCCCCceECCCC
Confidence 44566778889999 98 5677776665 7899999876543 23222233445666665
No 247
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.21 E-value=1.2e-09 Score=107.81 Aligned_cols=200 Identities=19% Similarity=0.265 Sum_probs=147.9
Q ss_pred CCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEee--cCC--CeEEEEE----CCCCC
Q 009715 221 GGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHI--CQG--SINSIAF----STDGT 292 (528)
Q Consensus 221 ~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~--~v~~l~~----spdg~ 292 (528)
... +||....||.++||+..++ .....|.+.... +..+....|.. ... ...++.+ +.|..
T Consensus 4 ~~~-~~A~~~~~g~l~iw~t~~~-~~~~e~~p~~~~----------s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~ 71 (541)
T KOG4547|consen 4 ALD-YFALSTGDGRLRIWDTAKN-QLQQEFAPIASL----------SGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTS 71 (541)
T ss_pred hhh-eEeecCCCCeEEEEEccCc-eeeeeeccchhc----------cCcceeEEEEEEeccchHHHHhHHHHhhccCCce
Confidence 344 8999999999999998763 222223222111 11111122210 000 0111111 22445
Q ss_pred EEEEEeCCCcEEEEecCCceEEeeec--ccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCeEEEE
Q 009715 293 YLATVGRDGYLRVFDYSKEQLICGGK--SYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVA 370 (528)
Q Consensus 293 ~l~s~~~dg~i~vwd~~~~~~~~~~~--~~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~v~ 370 (528)
.++-|...|.|.+|++..++.-..+. .|.+.|.++.|+.+-..|.+++.|..+..|+...++.++.++.....+.+++
T Consensus 72 ~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~ 151 (541)
T KOG4547|consen 72 MLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLC 151 (541)
T ss_pred EEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEE
Confidence 78889999999999999998877664 5899999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEEEeecCCCCCCCeecCCCCCccCCceeeeecCCCCceee
Q 009715 371 FDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMR 450 (528)
Q Consensus 371 f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~d~~~~~g~~~~~~~~~ 450 (528)
.+| || ..+++++ ++|++||+.+++.+..+
T Consensus 152 is~-------D~------~~l~~as--~~ik~~~~~~kevv~~f------------------------------------ 180 (541)
T KOG4547|consen 152 ISP-------DG------KILLTAS--RQIKVLDIETKEVVITF------------------------------------ 180 (541)
T ss_pred EcC-------CC------CEEEecc--ceEEEEEccCceEEEEe------------------------------------
Confidence 999 98 6788776 68999999998877655
Q ss_pred ecCCCCceEEeecCCCCeEEEEEeCC-----e---EEEEECCCeEEEEeCCC
Q 009715 451 DVPKLSPLVAHRVHTEPLSGLIFTQE-----S---VLTVCREGHIKIWMRPG 494 (528)
Q Consensus 451 d~~~~~~~~~~~~h~~~V~~l~~s~d-----~---l~t~s~Dg~i~iW~~~~ 494 (528)
.+|.++|+++.|..+ + |.++..+.-+.+|-+..
T Consensus 181 -----------tgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 181 -----------TGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred -----------cCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 458999999999874 2 55667778899998765
No 248
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.20 E-value=4.6e-09 Score=107.11 Aligned_cols=162 Identities=17% Similarity=0.184 Sum_probs=96.9
Q ss_pred CCceeEEEEeeCCCc--EEEEEeCCce--EEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEE
Q 009715 210 NSRCTSVTWVPGGDG--AFVVGHADGN--LYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSI 285 (528)
Q Consensus 210 ~~~v~~l~~~p~g~~--~l~tg~~dg~--v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 285 (528)
...+..-+|+|||+. ++++...+|. |++.++..+. .. .+.. ..+.....
T Consensus 184 ~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~--~~----------------------~lt~---~~g~~~~p 236 (428)
T PRK01029 184 HSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPA--GK----------------------KILA---LQGNQLMP 236 (428)
T ss_pred CCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCC--ce----------------------Eeec---CCCCccce
Confidence 345567799999984 2335555554 6666665321 11 1111 12344568
Q ss_pred EECCCCCEEEEEeC-----CCcEEEEecCCc---eEEeeecccCCCeEEEEEcCCCCEEEEEe-CCCcEEEE--ECCC-C
Q 009715 286 AFSTDGTYLATVGR-----DGYLRVFDYSKE---QLICGGKSYYGALLCCAWSMDGKYILTGG-EDDLVQVW--SMED-R 353 (528)
Q Consensus 286 ~~spdg~~l~s~~~-----dg~i~vwd~~~~---~~~~~~~~~~~~v~~l~~sp~g~~l~sg~-~dg~v~vw--d~~~-~ 353 (528)
+|+|||+.|+..+. +..+.+|++..+ +.........+.....+|+|||+.|+..+ .++...|| ++.. +
T Consensus 237 ~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g 316 (428)
T PRK01029 237 TFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEG 316 (428)
T ss_pred EECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccc
Confidence 99999999887653 223455777642 33333322223445789999999888665 46655555 4432 2
Q ss_pred eEEEEeecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCC---CeEEEEEccCCeEE
Q 009715 354 KVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQD---TRLLLWDLEMDEIV 411 (528)
Q Consensus 354 ~~~~~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D---~~i~lwd~~~~~~~ 411 (528)
.....+..+...+....|+| || ..|+..+.+ ..|.+||+.+++..
T Consensus 317 ~~~~~lt~~~~~~~~p~wSP-------DG------~~Laf~~~~~g~~~I~v~dl~~g~~~ 364 (428)
T PRK01029 317 QSPRLLTKKYRNSSCPAWSP-------DG------KKIAFCSVIKGVRQICVYDLATGRDY 364 (428)
T ss_pred cceEEeccCCCCccceeECC-------CC------CEEEEEEcCCCCcEEEEEECCCCCeE
Confidence 33444544556778899999 99 556555432 46888998877653
No 249
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.18 E-value=1.3e-08 Score=104.69 Aligned_cols=183 Identities=14% Similarity=0.105 Sum_probs=116.0
Q ss_pred ecCCCeEEEEECCCCCEEEEEeCC---CcEEEEecCCceEEeeecccCCCeEEEEEcCCCCEEEE-EeCCC--cEEEEEC
Q 009715 277 ICQGSINSIAFSTDGTYLATVGRD---GYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILT-GGEDD--LVQVWSM 350 (528)
Q Consensus 277 ~h~~~v~~l~~spdg~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s-g~~dg--~v~vwd~ 350 (528)
.+...+...+|+|||+.|+..+.+ ..|.+||+.+++... +....+.+....|+|||+.|+. ...++ .|++||+
T Consensus 196 ~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~ 274 (430)
T PRK00178 196 QSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDL 274 (430)
T ss_pred cCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEEC
Confidence 345678899999999999887643 369999999886543 2333444557899999998874 44444 6888899
Q ss_pred CCCeEEEEeecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEe-CCC--eEEEEEccCCeEEEEeecCCCCCCCeecC
Q 009715 351 EDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVG-QDT--RLLLWDLEMDEIVVPLRRGPLGGSPTFST 427 (528)
Q Consensus 351 ~~~~~~~~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s-~D~--~i~lwd~~~~~~~~~~~~~~~~~~~~~s~ 427 (528)
++++.. .+..+........|+| || ..|+..+ .++ .|.++|+.+++... +..
T Consensus 275 ~~~~~~-~lt~~~~~~~~~~~sp-------Dg------~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt~----------- 328 (430)
T PRK00178 275 ASRQLS-RVTNHPAIDTEPFWGK-------DG------RTLYFTSDRGGKPQIYKVNVNGGRAER-VTF----------- 328 (430)
T ss_pred CCCCeE-EcccCCCCcCCeEECC-------CC------CEEEEEECCCCCceEEEEECCCCCEEE-eec-----------
Confidence 887654 3444555667788999 98 4444444 333 56666776655321 110
Q ss_pred CCCCccCCceeeeecCCCCceeeecCCCCceEEeecCCCCeEEEEEeCCe--EEEEEC-CC--eEEEEeCCCCccccCCC
Q 009715 428 GSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCR-EG--HIKIWMRPGVAESQSSS 502 (528)
Q Consensus 428 ~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~~s~d~--l~t~s~-Dg--~i~iW~~~~~~~~~~~~ 502 (528)
. ........|+||+ |+..+. ++ .|.+||+.++.......
T Consensus 329 ----------------------------------~--~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~ 372 (430)
T PRK00178 329 ----------------------------------V--GNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTD 372 (430)
T ss_pred ----------------------------------C--CCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEccC
Confidence 0 0112245688874 544443 33 58888888765433322
Q ss_pred c--cceEEEccCCceEEEeeee
Q 009715 503 S--ETVLSTSSKDKPLLSSKVV 522 (528)
Q Consensus 503 ~--~~vl~~spd~~~l~s~~~~ 522 (528)
. ..-..|+|||+.|+.+...
T Consensus 373 ~~~~~~p~~spdg~~i~~~~~~ 394 (430)
T PRK00178 373 TSLDESPSVAPNGTMLIYATRQ 394 (430)
T ss_pred CCCCCCceECCCCCEEEEEEec
Confidence 1 1226889999998866543
No 250
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.16 E-value=1.7e-08 Score=102.88 Aligned_cols=200 Identities=20% Similarity=0.230 Sum_probs=116.3
Q ss_pred CCCCCeE---EEEecCC--cEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeCCc----eE
Q 009715 165 AKDGHDL---LIGLNSG--DVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADG----NL 235 (528)
Q Consensus 165 ~~~~~~l---~~g~~~G--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg----~v 235 (528)
+|||+.+ ++...+| +|++.++.... .+.+. . ..+.....+|+|||+.++++...+| .+
T Consensus 193 SPDG~~~~~~y~S~~~g~~~I~~~~l~~g~---~~~lt---~-------~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~ 259 (428)
T PRK01029 193 MHIGSGFPYLYVSYKLGVPKIFLGSLENPA---GKKIL---A-------LQGNQLMPTFSPRKKLLAFISDRYGNPDLFI 259 (428)
T ss_pred ccCCCceEEEEEEccCCCceEEEEECCCCC---ceEee---c-------CCCCccceEECCCCCEEEEEECCCCCcceeE
Confidence 8998753 2444444 57777776521 11111 0 2223456899999994444444334 23
Q ss_pred EEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCCCCEEEEEe-CCCcEEEE--ecCC-c
Q 009715 236 YVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVG-RDGYLRVF--DYSK-E 311 (528)
Q Consensus 236 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~~-~dg~i~vw--d~~~-~ 311 (528)
.+|++..+.. ..+.+....+.+.....+|+|||+.|+..+ .+|...+| ++.. +
T Consensus 260 ~~~~~~~g~~-----------------------g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g 316 (428)
T PRK01029 260 QSFSLETGAI-----------------------GKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEG 316 (428)
T ss_pred EEeecccCCC-----------------------CcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccc
Confidence 3355543110 011111111123345689999999888766 45654444 5432 2
Q ss_pred eEEeeecccCCCeEEEEEcCCCCEEEEEeCC---CcEEEEECCCCeEEEEeecCCCCeEEEEEecCCCCCCCCCCcccee
Q 009715 312 QLICGGKSYYGALLCCAWSMDGKYILTGGED---DLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVM 388 (528)
Q Consensus 312 ~~~~~~~~~~~~v~~l~~sp~g~~l~sg~~d---g~v~vwd~~~~~~~~~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~ 388 (528)
.....+..+...+....|+|||++|+....+ ..|.+||+.+++...... ....+....|+| ||
T Consensus 317 ~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~-~~~~~~~p~wSp-------DG------ 382 (428)
T PRK01029 317 QSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTT-SPENKESPSWAI-------DS------ 382 (428)
T ss_pred cceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccC-CCCCccceEECC-------CC------
Confidence 2233343344566788999999988876543 469999999887644332 344577899999 98
Q ss_pred EEEE-EEeC--CCeEEEEEccCCeEEEEe
Q 009715 389 YRFG-SVGQ--DTRLLLWDLEMDEIVVPL 414 (528)
Q Consensus 389 ~~l~-s~s~--D~~i~lwd~~~~~~~~~~ 414 (528)
..|+ +... ...|.+||+..++.....
T Consensus 383 ~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt 411 (428)
T PRK01029 383 LHLVYSAGNSNESELYLISLITKKTRKIV 411 (428)
T ss_pred CEEEEEECCCCCceEEEEECCCCCEEEee
Confidence 3444 3332 457888999887754433
No 251
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.16 E-value=2.6e-08 Score=102.44 Aligned_cols=177 Identities=18% Similarity=0.224 Sum_probs=111.6
Q ss_pred cCCceeEEEEeeCCCcEEEEEe-CC--ceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEE
Q 009715 209 NNSRCTSVTWVPGGDGAFVVGH-AD--GNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSI 285 (528)
Q Consensus 209 h~~~v~~l~~~p~g~~~l~tg~-~d--g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 285 (528)
+...+...+|+|+|+ .|+..+ .+ ..|++|++..+.. ..+....+.+...
T Consensus 197 ~~~~~~~p~wSpDG~-~la~~s~~~~~~~l~~~~l~~g~~---------------------------~~l~~~~g~~~~~ 248 (430)
T PRK00178 197 SREPILSPRWSPDGK-RIAYVSFEQKRPRIFVQNLDTGRR---------------------------EQITNFEGLNGAP 248 (430)
T ss_pred CCCceeeeeECCCCC-EEEEEEcCCCCCEEEEEECCCCCE---------------------------EEccCCCCCcCCe
Confidence 556789999999999 565544 33 3688889865211 0011112334568
Q ss_pred EECCCCCEEEEE-eCCC--cEEEEecCCceEEeeecccCCCeEEEEEcCCCCEEEEEeC-CC--cEEEEECCCCeEEEEe
Q 009715 286 AFSTDGTYLATV-GRDG--YLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGE-DD--LVQVWSMEDRKVVAWG 359 (528)
Q Consensus 286 ~~spdg~~l~s~-~~dg--~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~sg~~-dg--~v~vwd~~~~~~~~~~ 359 (528)
.|+|||+.|+.. ..++ .|.+||+++++... +..+........|+|||+.|+..+. ++ .|+++|+.+++.....
T Consensus 249 ~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~-lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt 327 (430)
T PRK00178 249 AWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSR-VTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVT 327 (430)
T ss_pred EECCCCCEEEEEEccCCCceEEEEECCCCCeEE-cccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee
Confidence 999999988754 4444 68888998876543 4445555667899999998776654 33 5777888777643322
Q ss_pred ecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeC-CC--eEEEEEccCCeEEEEeecCCCCCCCeecCCC
Q 009715 360 EGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQ-DT--RLLLWDLEMDEIVVPLRRGPLGGSPTFSTGS 429 (528)
Q Consensus 360 ~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~-D~--~i~lwd~~~~~~~~~~~~~~~~~~~~~s~~~ 429 (528)
. .........|+| || ..|+..+. ++ .|.+||+.+++.. .+..........|++++
T Consensus 328 ~-~~~~~~~~~~Sp-------dg------~~i~~~~~~~~~~~l~~~dl~tg~~~-~lt~~~~~~~p~~spdg 385 (430)
T PRK00178 328 F-VGNYNARPRLSA-------DG------KTLVMVHRQDGNFHVAAQDLQRGSVR-ILTDTSLDESPSVAPNG 385 (430)
T ss_pred c-CCCCccceEECC-------CC------CEEEEEEccCCceEEEEEECCCCCEE-EccCCCCCCCceECCCC
Confidence 2 223344578999 98 45544443 33 5888999887653 33332334456677766
No 252
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.16 E-value=1.3e-10 Score=126.89 Aligned_cols=188 Identities=18% Similarity=0.297 Sum_probs=149.2
Q ss_pred CCCCCeEEEEecCCcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCC
Q 009715 165 AKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDG 244 (528)
Q Consensus 165 ~~~~~~l~~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~ 244 (528)
||...+.++|++||.|++|.-..+ +..+. +.. ..+..|+.+.|+.+|. .+..+..||.+.+|....
T Consensus 2217 Hp~~~~Yltgs~dgsv~~~~w~~~-----~~v~~---~rt---~g~s~vtr~~f~~qGn-k~~i~d~dg~l~l~q~~p-- 2282 (2439)
T KOG1064|consen 2217 HPSDPYYLTGSQDGSVRMFEWGHG-----QQVVC---FRT---AGNSRVTRSRFNHQGN-KFGIVDGDGDLSLWQASP-- 2282 (2439)
T ss_pred CCCCceEEecCCCceEEEEeccCC-----CeEEE---eec---cCcchhhhhhhcccCC-ceeeeccCCceeecccCC--
Confidence 788889999999999999986541 12211 111 1337899999999999 899999999999999862
Q ss_pred CCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCCCCEEEEEe---CCCcEEEEecCC-ceEEeeeccc
Q 009715 245 AGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVG---RDGYLRVFDYSK-EQLICGGKSY 320 (528)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~~---~dg~i~vwd~~~-~~~~~~~~~~ 320 (528)
.+...|+.|......+.|-. ..+++++ .++.+.+||..- +..-.....|
T Consensus 2283 -------------------------k~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H 2335 (2439)
T KOG1064|consen 2283 -------------------------KPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCH 2335 (2439)
T ss_pred -------------------------cceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeec
Confidence 57778888999999999975 5677764 568899999642 2222233789
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeE
Q 009715 321 YGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRL 400 (528)
Q Consensus 321 ~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i 400 (528)
.+.++++++-|..++|++|+.+|.|++||++..+.++.++. ++. . .+|++++..|.|
T Consensus 2336 ~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~~-------~-------~~f~~~ss~g~i 2392 (2439)
T KOG1064|consen 2336 DGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LDT-------R-------EYFVTGSSEGNI 2392 (2439)
T ss_pred CCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh---------hhh-------h-------heeeccCcccce
Confidence 99999999999999999999999999999999888777764 222 2 379999999999
Q ss_pred EEEEccCCeEEEEeec
Q 009715 401 LLWDLEMDEIVVPLRR 416 (528)
Q Consensus 401 ~lwd~~~~~~~~~~~~ 416 (528)
+||++..-..+..+..
T Consensus 2393 kIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2393 KIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred EEEEccccchhhcCch
Confidence 9999998877776654
No 253
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.14 E-value=2.8e-09 Score=96.62 Aligned_cols=195 Identities=16% Similarity=0.182 Sum_probs=136.3
Q ss_pred CCCCCeEEEEecCCcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCC
Q 009715 165 AKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDG 244 (528)
Q Consensus 165 ~~~~~~l~~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~ 244 (528)
...+..++++..+|.+.+.+..... +.-....+.|.-+++..+|+...++++.+|+.|+.+..||++..+
T Consensus 130 ~~~~~~i~vs~s~G~~~~v~~t~~~----------le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~ 199 (339)
T KOG0280|consen 130 STSGTKIFVSDSRGSISGVYETEMV----------LEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPK 199 (339)
T ss_pred eccCceEEEEcCCCcEEEEecceee----------eeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCc
Confidence 5667789999999999866544311 111113445999999999998888899999999999999998421
Q ss_pred CCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECC-CCCEEEEEeCCCcEEEEecC-CceEEeeecccCC
Q 009715 245 AGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST-DGTYLATVGRDGYLRVFDYS-KEQLICGGKSYYG 322 (528)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp-dg~~l~s~~~dg~i~vwd~~-~~~~~~~~~~~~~ 322 (528)
. -..+.-+.|...|.+|.-+| ++.+|++|+.|-.|++||.+ -++++..-. -.+
T Consensus 200 ~------------------------~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-v~G 254 (339)
T KOG0280|consen 200 T------------------------FIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK-VGG 254 (339)
T ss_pred c------------------------eeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc-ccc
Confidence 1 01111345788999999988 78999999999999999998 456665443 458
Q ss_pred CeEEEEEcCCC--CEEEEEeCCCcEEEEECCCC--e---EEEEeecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEe
Q 009715 323 ALLCCAWSMDG--KYILTGGEDDLVQVWSMEDR--K---VVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVG 395 (528)
Q Consensus 323 ~v~~l~~sp~g--~~l~sg~~dg~v~vwd~~~~--~---~~~~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s 395 (528)
.|..+.++|.- ++|+++.. +-.+|.++..+ + .....+.|.+-+..-.|+.. + .+|+||+
T Consensus 255 GVWRi~~~p~~~~~lL~~CMh-~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~------~-------~~lATCs 320 (339)
T KOG0280|consen 255 GVWRIKHHPEIFHRLLAACMH-NGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSK------D-------SFLATCS 320 (339)
T ss_pred ceEEEEecchhhhHHHHHHHh-cCceEEEecccccchheeeeccccccceeeccccccc------c-------ceeeeee
Confidence 89999999943 34445444 44677777654 2 34445567777777777431 3 3788876
Q ss_pred -CCCeEE-EEEccCC
Q 009715 396 -QDTRLL-LWDLEMD 408 (528)
Q Consensus 396 -~D~~i~-lwd~~~~ 408 (528)
.|+.++ +|-..++
T Consensus 321 FYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 321 FYDKKIRQLWLHITG 335 (339)
T ss_pred ccccceeeeeeeccC
Confidence 566644 7754443
No 254
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.14 E-value=1.2e-07 Score=95.74 Aligned_cols=292 Identities=14% Similarity=0.125 Sum_probs=170.5
Q ss_pred eeeCCCccEEEEeCCCcEEEEeCCCCCCC----CCCCCeEEEEecCCcEEEEEccccccccccceeeeeeeccCCcccCC
Q 009715 136 TNFDGKGTYIIFNVGDAIFISDLNSQDKD----AKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNS 211 (528)
Q Consensus 136 ~~~~~~g~~~~~~~~~~i~v~~~~~~~~~----~~~~~~l~~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~ 211 (528)
.....+|.+.+++..+.-.+|..+..... ..++..++++..+|.|+.+|..+.. . .+... -..
T Consensus 69 ~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~ald~~tG~-----~-----~W~~~---~~~ 135 (377)
T TIGR03300 69 YAADADGTVVALDAETGKRLWRVDLDERLSGGVGADGGLVFVGTEKGEVIALDAEDGK-----E-----LWRAK---LSS 135 (377)
T ss_pred EEECCCCeEEEEEccCCcEeeeecCCCCcccceEEcCCEEEEEcCCCEEEEEECCCCc-----E-----eeeec---cCc
Confidence 33345678888887666666665543322 3467889999999999999986521 1 11111 011
Q ss_pred ceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCCC
Q 009715 212 RCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDG 291 (528)
Q Consensus 212 ~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spdg 291 (528)
.+.+.... .+. .++.+..+|.|+.||..++. ....+.... +......... ..+ .+
T Consensus 136 ~~~~~p~v-~~~-~v~v~~~~g~l~a~d~~tG~-~~W~~~~~~----------------~~~~~~~~~s----p~~--~~ 190 (377)
T TIGR03300 136 EVLSPPLV-ANG-LVVVRTNDGRLTALDAATGE-RLWTYSRVT----------------PALTLRGSAS----PVI--AD 190 (377)
T ss_pred eeecCCEE-ECC-EEEEECCCCeEEEEEcCCCc-eeeEEccCC----------------CceeecCCCC----CEE--EC
Confidence 12211111 233 57778889999999987632 211111000 0000000001 111 12
Q ss_pred CEEEEEeCCCcEEEEecCCceEEeeecccCC----C---eEEEEEcC--CCCEEEEEeCCCcEEEEECCCCeEEEEeecC
Q 009715 292 TYLATVGRDGYLRVFDYSKEQLICGGKSYYG----A---LLCCAWSM--DGKYILTGGEDDLVQVWSMEDRKVVAWGEGH 362 (528)
Q Consensus 292 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~----~---v~~l~~sp--~g~~l~sg~~dg~v~vwd~~~~~~~~~~~~h 362 (528)
..++.+..++.+..+|+++|+.+........ . ...+.-+| .+..+++++.++.++.||.++++.+.... .
T Consensus 191 ~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~-~ 269 (377)
T TIGR03300 191 GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRD-A 269 (377)
T ss_pred CEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeec-c
Confidence 4677788889999999999987654321100 0 00111111 34577788889999999999998776554 2
Q ss_pred CCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEEEeecCC--CCCCCeecCCCCCccCCceeee
Q 009715 363 NSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGP--LGGSPTFSTGSQSAHWDNVCPV 440 (528)
Q Consensus 363 ~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~--~~~~~~~s~~~~~~~~d~~~~~ 440 (528)
.. ....... ++ .++.++.|+.|..+|..+++.+....... ....+. ..+..+.+
T Consensus 270 ~~-~~~p~~~--------~~-------~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~--------i~g~~l~~ 325 (377)
T TIGR03300 270 SS-YQGPAVD--------DN-------RLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPA--------VVGGYLVV 325 (377)
T ss_pred CC-ccCceEe--------CC-------EEEEECCCCeEEEEECCCCcEEEccccccCCccccCE--------EECCEEEE
Confidence 11 1122222 33 67777899999999999998876653211 111111 12345567
Q ss_pred ecCCCCceeeecCCCCceEEeecCCCC-eEEEEEeCCeEEEEECCCeEEEE
Q 009715 441 GTLQPAPSMRDVPKLSPLVAHRVHTEP-LSGLIFTQESVLTVCREGHIKIW 490 (528)
Q Consensus 441 g~~~~~~~~~d~~~~~~~~~~~~h~~~-V~~l~~s~d~l~t~s~Dg~i~iW 490 (528)
++.++.+..+|..+++.+..+..+... ....++..+.|+.++.||.|..|
T Consensus 326 ~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~~~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 326 GDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVVGDGLLVQTRDGDLYAF 376 (377)
T ss_pred EeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEECCEEEEEeCCceEEEe
Confidence 777788888888888888777766543 33344555678888888888765
No 255
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.12 E-value=1.8e-07 Score=93.02 Aligned_cols=251 Identities=16% Similarity=0.212 Sum_probs=148.6
Q ss_pred CCCCCeEEEEec----CCcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEE-eCCceEEEEE
Q 009715 165 AKDGHDLLIGLN----SGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVG-HADGNLYVYE 239 (528)
Q Consensus 165 ~~~~~~l~~g~~----~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg-~~dg~v~vwd 239 (528)
+++++.|++... +|.|..|.+.... ..+....... ........++++|+++ +|+++ ..+|.|.+++
T Consensus 45 ~~~~~~LY~~~e~~~~~g~v~~~~i~~~~----g~L~~~~~~~----~~g~~p~~i~~~~~g~-~l~vany~~g~v~v~~ 115 (345)
T PF10282_consen 45 SPDGRRLYVVNEGSGDSGGVSSYRIDPDT----GTLTLLNSVP----SGGSSPCHIAVDPDGR-FLYVANYGGGSVSVFP 115 (345)
T ss_dssp -TTSSEEEEEETTSSTTTEEEEEEEETTT----TEEEEEEEEE----ESSSCEEEEEECTTSS-EEEEEETTTTEEEEEE
T ss_pred EeCCCEEEEEEccccCCCCEEEEEECCCc----ceeEEeeeec----cCCCCcEEEEEecCCC-EEEEEEccCCeEEEEE
Confidence 789999988876 5789999887520 0111111111 1223345699999999 55555 5789999999
Q ss_pred cCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCCCCEEEEEeC-CCcEEEEecCCce--EE--
Q 009715 240 KSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGR-DGYLRVFDYSKEQ--LI-- 314 (528)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~~~-dg~i~vwd~~~~~--~~-- 314 (528)
+..++............ ....... ........++.|+||++++++... ...|++|+++... +.
T Consensus 116 l~~~g~l~~~~~~~~~~-----g~g~~~~-------rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~ 183 (345)
T PF10282_consen 116 LDDDGSLGEVVQTVRHE-----GSGPNPD-------RQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPV 183 (345)
T ss_dssp ECTTSEEEEEEEEEESE-----EEESSTT-------TTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEE
T ss_pred ccCCcccceeeeecccC-----CCCCccc-------ccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEe
Confidence 98754322111100000 0000000 001255789999999998888753 3479999997654 31
Q ss_pred eeec-ccCCCeEEEEEcCCCCEEEEEeC-CCcEEEEECC--CCe--EEEEeec------CCCCeEEEEEecCCCCCCCCC
Q 009715 315 CGGK-SYYGALLCCAWSMDGKYILTGGE-DDLVQVWSME--DRK--VVAWGEG------HNSWVSGVAFDSYWSQPNSDG 382 (528)
Q Consensus 315 ~~~~-~~~~~v~~l~~sp~g~~l~sg~~-dg~v~vwd~~--~~~--~~~~~~~------h~~~V~~v~f~p~~~~~~~dg 382 (528)
..+. ......+.+.|+|+++++.+..+ ++.|.+|++. .++ .+..+.. .......|+++| ||
T Consensus 184 ~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~isp-------dg 256 (345)
T PF10282_consen 184 DSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISP-------DG 256 (345)
T ss_dssp EEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-T-------TS
T ss_pred eccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEec-------CC
Confidence 1221 23456788999999998876655 7789999988 442 2222221 123688999999 99
Q ss_pred CccceeEEEEEEeCCCeEEEEEccC--CeEEEEeecCCCCCCCeecCCCCCccCCceeeeecCCCCceeeecCCCCceEE
Q 009715 383 TAETVMYRFGSVGQDTRLLLWDLEM--DEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVA 460 (528)
Q Consensus 383 ~~~~~~~~l~s~s~D~~i~lwd~~~--~~~~~~~~~~~~~~~~~~s~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~ 460 (528)
+ +++++...+..|.+|++.. ++.. .+. .
T Consensus 257 ~-----~lyvsnr~~~sI~vf~~d~~~g~l~-~~~--------------------------------------------~ 286 (345)
T PF10282_consen 257 R-----FLYVSNRGSNSISVFDLDPATGTLT-LVQ--------------------------------------------T 286 (345)
T ss_dssp S-----EEEEEECTTTEEEEEEECTTTTTEE-EEE--------------------------------------------E
T ss_pred C-----EEEEEeccCCEEEEEEEecCCCceE-EEE--------------------------------------------E
Confidence 4 4566667788999999843 3321 111 1
Q ss_pred eecCCCCeEEEEEeCCe--EEEEE-CCCeEEEEeCC
Q 009715 461 HRVHTEPLSGLIFTQES--VLTVC-REGHIKIWMRP 493 (528)
Q Consensus 461 ~~~h~~~V~~l~~s~d~--l~t~s-~Dg~i~iW~~~ 493 (528)
.......-+.++++|++ |+.+. .++.|.+|++.
T Consensus 287 ~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 287 VPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp EEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred EeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence 11122336889999975 55555 67899999875
No 256
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.11 E-value=7.8e-08 Score=93.59 Aligned_cols=295 Identities=13% Similarity=0.111 Sum_probs=173.3
Q ss_pred CCCCCeEEEEecCC---------------cEEEEEccccccccccceeeeeeeccCCcccCCcee-EEEEeeCCCcEEEE
Q 009715 165 AKDGHDLLIGLNSG---------------DVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCT-SVTWVPGGDGAFVV 228 (528)
Q Consensus 165 ~~~~~~l~~g~~~G---------------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~l~~~p~g~~~l~t 228 (528)
+|.+++|.+-...+ .+.+||+.+.... ... . ........+ -+.|+-+.. ++|=
T Consensus 80 SP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv------~sf--~--~~~q~~~~Wp~~k~s~~D~-y~AR 148 (561)
T COG5354 80 SPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIV------FSF--N--GISQPYLGWPVLKFSIDDK-YVAR 148 (561)
T ss_pred CcccceeeeeccCCccChhhccCCccccCceeEEeccCceeE------eec--c--ccCCcccccceeeeeecch-hhhh
Confidence 67788887755433 4889998773211 111 1 100111244 678888887 4443
Q ss_pred EeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCC--CCEEEE-----EeCCC
Q 009715 229 GHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTD--GTYLAT-----VGRDG 301 (528)
Q Consensus 229 g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spd--g~~l~s-----~~~dg 301 (528)
- ....++|+++ ++......+.. ++ ...|....|+|. +..||. .+.++
T Consensus 149 v-v~~sl~i~e~-t~n~~~~p~~~----------------------lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa 202 (561)
T COG5354 149 V-VGSSLYIHEI-TDNIEEHPFKN----------------------LR--PVGILDFSISPEGNHDELAYWTPEKLNKPA 202 (561)
T ss_pred h-ccCeEEEEec-CCccccCchhh----------------------cc--ccceeeEEecCCCCCceEEEEccccCCCCc
Confidence 3 2346999997 32222111111 11 256788889984 445554 35678
Q ss_pred cEEEEecCCceEEeeecccCCCeEEEEEcCCCCEEEEEe-----------CCCcEEEEECCCCeEEEEeecCCCCeEEEE
Q 009715 302 YLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGG-----------EDDLVQVWSMEDRKVVAWGEGHNSWVSGVA 370 (528)
Q Consensus 302 ~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~sg~-----------~dg~v~vwd~~~~~~~~~~~~h~~~V~~v~ 370 (528)
.+++|.+..+..+.+..-....-..+.|++.|++|+.-- ....++|+++....+.... .-.++|...+
T Consensus 203 ~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~-~~~~pVhdf~ 281 (561)
T COG5354 203 MVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK-DLKDPVHDFT 281 (561)
T ss_pred EEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceec-cccccceeee
Confidence 999999986666544322223334688999999766421 1346888888754433222 5689999999
Q ss_pred EecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEEEeecCCCCCCCeecCCCCCccCCceeeeecCCCCceee
Q 009715 371 FDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMR 450 (528)
Q Consensus 371 f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~d~~~~~g~~~~~~~~~ 450 (528)
|.| ++++ .-+++|-.+..+.++|++.. .+..+. ...-..+.|++...... ....+.+.+.+.+|
T Consensus 282 W~p-------~S~~----F~vi~g~~pa~~s~~~lr~N-l~~~~P-e~~rNT~~fsp~~r~il---~agF~nl~gni~i~ 345 (561)
T COG5354 282 WEP-------LSSR----FAVISGYMPASVSVFDLRGN-LRFYFP-EQKRNTIFFSPHERYIL---FAGFDNLQGNIEIF 345 (561)
T ss_pred ecc-------cCCc----eeEEecccccceeecccccc-eEEecC-CcccccccccCcccEEE---EecCCccccceEEe
Confidence 999 6511 34555568999999999876 333332 24455666776653111 11345667788888
Q ss_pred ecCCCCceE-EeecCCCCeEEEEEeCCe--EEE--EE----CCCeEEEEeCCCCccccCCCccceEEEccCCceEEEe
Q 009715 451 DVPKLSPLV-AHRVHTEPLSGLIFTQES--VLT--VC----REGHIKIWMRPGVAESQSSSSETVLSTSSKDKPLLSS 519 (528)
Q Consensus 451 d~~~~~~~~-~~~~h~~~V~~l~~s~d~--l~t--~s----~Dg~i~iW~~~~~~~~~~~~~~~vl~~spd~~~l~s~ 519 (528)
|......+. .+.+- ..+-+.|+||+ +.+ .+ .|..|+|||+.+.... .-.-+.|.|.+++..+.
T Consensus 346 ~~~~rf~~~~~~~~~--n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f----el~~~~W~p~~~~~tts 417 (561)
T COG5354 346 DPAGRFKVAGAFNGL--NTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF----ELTNITWDPSGQYVTTS 417 (561)
T ss_pred ccCCceEEEEEeecC--CceEeeccCCceEEEecCCCcccccCcceEEEEecCchhh----hhhhccccCCcccceee
Confidence 877654443 44433 23456799985 333 33 4788999999886543 11114445555554443
No 257
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.10 E-value=6.5e-08 Score=99.47 Aligned_cols=195 Identities=13% Similarity=0.127 Sum_probs=113.0
Q ss_pred CCCCCeEEEEec-CC--cEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeCCce--EEEEE
Q 009715 165 AKDGHDLLIGLN-SG--DVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGN--LYVYE 239 (528)
Q Consensus 165 ~~~~~~l~~g~~-~G--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg~--v~vwd 239 (528)
+|||+.|+.... +| +|++||+..... +. . . . ........+|+|||+.++++...+|. |+++|
T Consensus 226 SPDG~~La~~s~~~g~~~L~~~dl~tg~~---~~----l--t-~---~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d 292 (448)
T PRK04792 226 SPDGRKLAYVSFENRKAEIFVQDIYTQVR---EK----V--T-S---FPGINGAPRFSPDGKKLALVLSKDGQPEIYVVD 292 (448)
T ss_pred CCCCCEEEEEEecCCCcEEEEEECCCCCe---EE----e--c-C---CCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEE
Confidence 899998877543 33 688888865210 00 0 0 0 11223468999999955556677776 66666
Q ss_pred cCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCCCCEEEEEeC-CC--cEEEEecCCceEEee
Q 009715 240 KSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGR-DG--YLRVFDYSKEQLICG 316 (528)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~~~-dg--~i~vwd~~~~~~~~~ 316 (528)
+.... +..+..+.......+|+|||++|+..+. ++ .|.++|+.+++....
T Consensus 293 l~tg~---------------------------~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~L 345 (448)
T PRK04792 293 IATKA---------------------------LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRL 345 (448)
T ss_pred CCCCC---------------------------eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEE
Confidence 65311 1111222344567899999998877654 33 577778877765432
Q ss_pred ecccCCCeEEEEEcCCCCEEEEEeC-CC--cEEEEECCCCeEEEEeecCCCCeEEEEEecCCCCCCCCCCccceeEEEEE
Q 009715 317 GKSYYGALLCCAWSMDGKYILTGGE-DD--LVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGS 393 (528)
Q Consensus 317 ~~~~~~~v~~l~~sp~g~~l~sg~~-dg--~v~vwd~~~~~~~~~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s 393 (528)
.. ........+|+|||++|+..+. ++ .|.++|+.+++... +... .......|+| ||+ .++++
T Consensus 346 t~-~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~-~~d~~ps~sp-------dG~-----~I~~~ 410 (448)
T PRK04792 346 TF-EGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTST-RLDESPSVAP-------NGT-----MVIYS 410 (448)
T ss_pred ec-CCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE-ccCC-CCCCCceECC-------CCC-----EEEEE
Confidence 21 2222345789999998887654 33 45667888776432 3222 1223457888 882 33444
Q ss_pred EeCCCe--EEEEEccCCeEEEEee
Q 009715 394 VGQDTR--LLLWDLEMDEIVVPLR 415 (528)
Q Consensus 394 ~s~D~~--i~lwd~~~~~~~~~~~ 415 (528)
...++. |.++|+ .+.....+.
T Consensus 411 ~~~~g~~~l~~~~~-~G~~~~~l~ 433 (448)
T PRK04792 411 TTYQGKQVLAAVSI-DGRFKARLP 433 (448)
T ss_pred EecCCceEEEEEEC-CCCceEECc
Confidence 444443 666676 344444443
No 258
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.10 E-value=6.4e-09 Score=96.24 Aligned_cols=236 Identities=15% Similarity=0.261 Sum_probs=167.7
Q ss_pred CCCCeEEEEecCCcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCC
Q 009715 166 KDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGA 245 (528)
Q Consensus 166 ~~~~~l~~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~ 245 (528)
+...-++....|-++++|--+. .++ ++.........+++++.+.++.. .|++|-..|++.-+.+..+
T Consensus 34 ~~e~gv~~~s~drtvrv~lkrd----s~q------~wpsI~~~mP~~~~~~~y~~e~~-~L~vg~~ngtvtefs~sed-- 100 (404)
T KOG1409|consen 34 PKEEGVISVSEDRTVRVWLKRD----SGQ------YWPSIYHYMPSPCSAMEYVSESR-RLYVGQDNGTVTEFALSED-- 100 (404)
T ss_pred cCCCCeEEccccceeeeEEecc----ccc------cCchhhhhCCCCceEeeeeccce-EEEEEEecceEEEEEhhhh--
Confidence 4455677788888999994332 111 11222222567899999999998 8999999999999987642
Q ss_pred CCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCCCCEEEEEeCCCcEEEEecCCceEEeeecccCCCeE
Q 009715 246 GDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALL 325 (528)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~ 325 (528)
+.+....+.+..|...|..+-|+-...++++.+.|..+.---.+.+..+..+. ......
T Consensus 101 --------------------fnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~-~~~~~t 159 (404)
T KOG1409|consen 101 --------------------FNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYN-FETPAS 159 (404)
T ss_pred --------------------hhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceE-eeccCC
Confidence 22355677788899999999999988999999999877655555555443221 111111
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCC--CeEEEEeecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEE
Q 009715 326 CCAWSMDGKYILTGGEDDLVQVWSMED--RKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLW 403 (528)
Q Consensus 326 ~l~~sp~g~~l~sg~~dg~v~vwd~~~--~~~~~~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lw 403 (528)
++.+.-. +...|...|.|.+..+.. -.++.++.+|.+.+.+++|+| .. .+|.+|..|..|.+|
T Consensus 160 ~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~-------~~------~~LfSg~~d~~vi~w 224 (404)
T KOG1409|consen 160 ALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDP-------GQ------RLLFSGASDHSVIMW 224 (404)
T ss_pred CCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcC-------CC------cEEEeccccCceEEE
Confidence 1222111 556676777777766544 457888999999999999998 44 599999999999999
Q ss_pred EccCCeEEEEeecCCCCCCCeecCCCCCccCCceeeeecCCCCceeeecCCCCceEEeecCCCCeEEEEEeCC--eEEEE
Q 009715 404 DLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE--SVLTV 481 (528)
Q Consensus 404 d~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~~s~d--~l~t~ 481 (528)
|+-..+-+. ..+.+|...|..+...+. .++++
T Consensus 225 digg~~g~~----------------------------------------------~el~gh~~kV~~l~~~~~t~~l~S~ 258 (404)
T KOG1409|consen 225 DIGGRKGTA----------------------------------------------YELQGHNDKVQALSYAQHTRQLISC 258 (404)
T ss_pred eccCCccee----------------------------------------------eeeccchhhhhhhhhhhhheeeeec
Confidence 986544321 134468888888877663 59999
Q ss_pred ECCCeEEEEeCCCCc
Q 009715 482 CREGHIKIWMRPGVA 496 (528)
Q Consensus 482 s~Dg~i~iW~~~~~~ 496 (528)
+.||.|.+|++.-..
T Consensus 259 ~edg~i~~w~mn~~r 273 (404)
T KOG1409|consen 259 GEDGGIVVWNMNVKR 273 (404)
T ss_pred cCCCeEEEEecccee
Confidence 999999999986543
No 259
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.09 E-value=1.1e-07 Score=93.55 Aligned_cols=200 Identities=18% Similarity=0.236 Sum_probs=130.0
Q ss_pred ccCCceeEEEEeeCCCc-EEEE-----EeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCC
Q 009715 208 VNNSRCTSVTWVPGGDG-AFVV-----GHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGS 281 (528)
Q Consensus 208 ~h~~~v~~l~~~p~g~~-~l~t-----g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 281 (528)
.|...|+.+.++|.+.. .+|+ .+.-+.|+||.....+.. +.......| + ..
T Consensus 163 l~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~----~~~a~ksFF--------k-----------ad 219 (566)
T KOG2315|consen 163 LSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQH----QPVANKSFF--------K-----------AD 219 (566)
T ss_pred eeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEecccccccc----chhhhcccc--------c-----------cc
Confidence 47888999999998543 3333 355568999988632211 000000000 1 12
Q ss_pred eEEEEECCCCC-EEEEEe--CC---------CcEEEEecCCceEEeeecccCCCeEEEEEcCCCCEEEEE--eCCCcEEE
Q 009715 282 INSIAFSTDGT-YLATVG--RD---------GYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTG--GEDDLVQV 347 (528)
Q Consensus 282 v~~l~~spdg~-~l~s~~--~d---------g~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~sg--~~dg~v~v 347 (528)
=..+.|++-|. +|+..+ -| ..+++.+++...+...+. -.++|.++.|+|+++.++++ -.--.+.|
T Consensus 220 kvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvti 298 (566)
T KOG2315|consen 220 KVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTI 298 (566)
T ss_pred eeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEE
Confidence 22466666444 222221 22 368888888555555554 47999999999999877764 45668999
Q ss_pred EECCCCeEEEEeecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeC---CCeEEEEEccCCeEEEEeecCCCCCCCe
Q 009715 348 WSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQ---DTRLLLWDLEMDEIVVPLRRGPLGGSPT 424 (528)
Q Consensus 348 wd~~~~~~~~~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~---D~~i~lwd~~~~~~~~~~~~~~~~~~~~ 424 (528)
||++ +.++..+ -+++-+++-|+| .| ++++.+|. -|.+-+||+.+.+++..+..
T Consensus 299 fnlr-~~~v~df--~egpRN~~~fnp-------~g------~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a-------- 354 (566)
T KOG2315|consen 299 FNLR-GKPVFDF--PEGPRNTAFFNP-------HG------NIILLAGFGNLPGDMEVWDVPNRKLIAKFKA-------- 354 (566)
T ss_pred EcCC-CCEeEeC--CCCCccceEECC-------CC------CEEEEeecCCCCCceEEEeccchhhcccccc--------
Confidence 9987 5566555 467788899999 88 56666664 47889999888776654432
Q ss_pred ecCCCCCccCCceeeeecCCCCceeeecCCCCceEEeecCCCCeEEEEEeCCe--EEEEE------CCCeEEEEeCCCCc
Q 009715 425 FSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVC------REGHIKIWMRPGVA 496 (528)
Q Consensus 425 ~s~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~~s~d~--l~t~s------~Dg~i~iW~~~~~~ 496 (528)
..-+-++|+||+ |+|+. .|+.++||++.+..
T Consensus 355 -----------------------------------------~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~ 393 (566)
T KOG2315|consen 355 -----------------------------------------ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSL 393 (566)
T ss_pred -----------------------------------------CCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCce
Confidence 123457899985 66665 47889999988765
No 260
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.09 E-value=3.2e-08 Score=101.77 Aligned_cols=178 Identities=20% Similarity=0.227 Sum_probs=108.4
Q ss_pred cCCceeEEEEeeCCCcEEEEE-eCCc--eEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEE
Q 009715 209 NNSRCTSVTWVPGGDGAFVVG-HADG--NLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSI 285 (528)
Q Consensus 209 h~~~v~~l~~~p~g~~~l~tg-~~dg--~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 285 (528)
+...+.+..|+|||+ .|+.. ..++ .|++||+..+.. .. +....+.....
T Consensus 216 ~~~~~~~p~wSPDG~-~La~~s~~~g~~~L~~~dl~tg~~--~~-------------------------lt~~~g~~~~~ 267 (448)
T PRK04792 216 SPEPLMSPAWSPDGR-KLAYVSFENRKAEIFVQDIYTQVR--EK-------------------------VTSFPGINGAP 267 (448)
T ss_pred CCCcccCceECCCCC-EEEEEEecCCCcEEEEEECCCCCe--EE-------------------------ecCCCCCcCCe
Confidence 455788999999999 55544 4444 577888764211 00 00001233468
Q ss_pred EECCCCCEEEEE-eCCCc--EEEEecCCceEEeeecccCCCeEEEEEcCCCCEEEEEeC-CC--cEEEEECCCCeEEEEe
Q 009715 286 AFSTDGTYLATV-GRDGY--LRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGE-DD--LVQVWSMEDRKVVAWG 359 (528)
Q Consensus 286 ~~spdg~~l~s~-~~dg~--i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~sg~~-dg--~v~vwd~~~~~~~~~~ 359 (528)
+|+|||+.|+.. ..++. |.++|+.+++... +..+.......+|+|||++|+..+. ++ .|+++|+.+++....
T Consensus 268 ~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~-lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~L- 345 (448)
T PRK04792 268 RFSPDGKKLALVLSKDGQPEIYVVDIATKALTR-ITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRL- 345 (448)
T ss_pred eECCCCCEEEEEEeCCCCeEEEEEECCCCCeEE-CccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEE-
Confidence 999999988764 55664 8888988776543 3445555677899999998876554 33 567778877764332
Q ss_pred ecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEE-eCCC--eEEEEEccCCeEEEEeecCCCCCCCeecCCCC
Q 009715 360 EGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSV-GQDT--RLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQ 430 (528)
Q Consensus 360 ~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~-s~D~--~i~lwd~~~~~~~~~~~~~~~~~~~~~s~~~~ 430 (528)
..........+|+| || ..|+.. ..++ .|.++|+.+++.. .+..........|++++.
T Consensus 346 t~~g~~~~~~~~Sp-------DG------~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~~~d~~ps~spdG~ 405 (448)
T PRK04792 346 TFEGEQNLGGSITP-------DG------RSMIMVNRTNGKFNIARQDLETGAMQ-VLTSTRLDESPSVAPNGT 405 (448)
T ss_pred ecCCCCCcCeeECC-------CC------CEEEEEEecCCceEEEEEECCCCCeE-EccCCCCCCCceECCCCC
Confidence 21233344578999 98 344444 3344 4556788777653 233222334556777663
No 261
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.09 E-value=7.2e-09 Score=95.90 Aligned_cols=235 Identities=16% Similarity=0.191 Sum_probs=140.6
Q ss_pred CCCCCeEEEEecCCcEEEEEcccccccccccee------eeeeeccCCcccCCceeEEEEeeCCCc-EEEEEeCCceEEE
Q 009715 165 AKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLV------GAHHYNKDGSVNNSRCTSVTWVPGGDG-AFVVGHADGNLYV 237 (528)
Q Consensus 165 ~~~~~~l~~g~~~G~v~iwd~~~~~~~~~~~~~------~~~~~~~~~~~h~~~v~~l~~~p~g~~-~l~tg~~dg~v~v 237 (528)
...|.+|++|..+|.|.++.-........+-.. ....+.+.. --...|+.+.|.+++.. .|+....|.+|++
T Consensus 34 ~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSl-eieEKinkIrw~~~~n~a~FLlstNdktiKl 112 (433)
T KOG1354|consen 34 DHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSL-EIEEKINKIRWLDDGNLAEFLLSTNDKTIKL 112 (433)
T ss_pred ecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhh-hhhhhhhhceecCCCCccEEEEecCCcceee
Confidence 578999999999999999865432110000000 000111111 13457999999987653 6777888999999
Q ss_pred EEcCCCCCCCCc--cccccccc---ee---EEe-ccCCCCCCCeEEE-eecCCCeEEEEECCCCCEEEEEeCCCcEEEEe
Q 009715 238 YEKSKDGAGDSS--FPVIKDQT---QF---SVA-HPRYSKSNPIARW-HICQGSINSIAFSTDGTYLATVGRDGYLRVFD 307 (528)
Q Consensus 238 wd~~~~~~~~~~--~~~~~~~~---~~---~~~-~~~~~~~~~~~~~-~~h~~~v~~l~~spdg~~l~s~~~dg~i~vwd 307 (528)
|.+...+..... ++...+.. .+ .+. +.......+.+++ ++|.-.|++|.++.|...++++ +|=.|.+|+
T Consensus 113 WKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA-DdLRINLWn 191 (433)
T KOG1354|consen 113 WKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA-DDLRINLWN 191 (433)
T ss_pred eeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec-cceeeeecc
Confidence 998753322211 11000000 00 000 0111122233333 4688899999999999988887 467899999
Q ss_pred cCCc-e--EEeeeccc-----CCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCeE----EEEe------------ecC
Q 009715 308 YSKE-Q--LICGGKSY-----YGALLCCAWSMDG-KYILTGGEDDLVQVWSMEDRKV----VAWG------------EGH 362 (528)
Q Consensus 308 ~~~~-~--~~~~~~~~-----~~~v~~l~~sp~g-~~l~sg~~dg~v~vwd~~~~~~----~~~~------------~~h 362 (528)
++-- + .+..++.+ ..-|++..|+|.. ..++-.+..|.|++.||+.... ...+ ..-
T Consensus 192 lei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffsei 271 (433)
T KOG1354|consen 192 LEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEI 271 (433)
T ss_pred ccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHH
Confidence 8632 1 22333333 3467888999954 4666777899999999985321 0111 112
Q ss_pred CCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccC-CeEEEEee
Q 009715 363 NSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEM-DEIVVPLR 415 (528)
Q Consensus 363 ~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~-~~~~~~~~ 415 (528)
-..|..+.|++ +| +++++-. =-+|++||+.+ .+++.++.
T Consensus 272 IsSISDvKFs~-------sG------ryilsRD-yltvk~wD~nme~~pv~t~~ 311 (433)
T KOG1354|consen 272 ISSISDVKFSH-------SG------RYILSRD-YLTVKLWDLNMEAKPVETYP 311 (433)
T ss_pred hhhhhceEEcc-------CC------cEEEEec-cceeEEEeccccCCcceEEe
Confidence 34688999999 88 5666643 36899999954 44454443
No 262
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.05 E-value=1.5e-07 Score=92.69 Aligned_cols=271 Identities=15% Similarity=0.184 Sum_probs=168.7
Q ss_pred ceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCCC
Q 009715 212 RCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDG 291 (528)
Q Consensus 212 ~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spdg 291 (528)
+++..+++++|+ +| .-+.+..++|++..... ..|......++++.|+|.+
T Consensus 36 ~~~v~~~S~~G~-lf-A~~~~~~v~i~~~~~~~----------------------------~~lt~~~~~~~~L~fSP~g 85 (566)
T KOG2315|consen 36 PCNVFAYSNNGR-LF-AYSDNQVVKVFEIATLK----------------------------VVLCVELKKTYDLLFSPKG 85 (566)
T ss_pred cceeEEEcCCCc-EE-EEEcCCeEEEEEccCCc----------------------------EEEEeccceeeeeeecccc
Confidence 478889999998 44 45556799999987532 1111112367899999999
Q ss_pred CEEEEE-----eC-----CCcEEEEecCCceEEeeecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeec
Q 009715 292 TYLATV-----GR-----DGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEG 361 (528)
Q Consensus 292 ~~l~s~-----~~-----dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~~~~~~~~ 361 (528)
.+|.+= .. ...+.+|+++++.....+..-...-.++.|++|..+.+- -..+.+++|++...+.+..- -
T Consensus 86 ~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~ar-lv~nev~f~~~~~f~~~~~k-l 163 (566)
T KOG2315|consen 86 NYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNGWVPQFSIDESLAAR-LVSNEVQFYDLGSFKTIQHK-L 163 (566)
T ss_pred cccccccccccccCCCCCCCceeeeeeccceehhheehhhhcCcccccccchhhhhh-hhcceEEEEecCCccceeee-e
Confidence 988762 11 245789999986554433321112257889988764332 22456888988764332211 1
Q ss_pred CCCCeEEEEEecCCCCC-------CCCC-----------------------------------CccceeEEEEEEeCCC-
Q 009715 362 HNSWVSGVAFDSYWSQP-------NSDG-----------------------------------TAETVMYRFGSVGQDT- 398 (528)
Q Consensus 362 h~~~V~~v~f~p~~~~~-------~~dg-----------------------------------~~~~~~~~l~s~s~D~- 398 (528)
|...|+.+.++|--.++ ..+| ...+...+|++..-|.
T Consensus 164 ~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDkt 243 (566)
T KOG2315|consen 164 SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKT 243 (566)
T ss_pred eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCC
Confidence 45556666666521110 0000 0011122344444444
Q ss_pred --------eEEEEEccCCeEEEEeecCCCCCCCeecCCCCCccCCceeeeecCCCCceeeecCCCCceEEeecCCCCeEE
Q 009715 399 --------RLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSG 470 (528)
Q Consensus 399 --------~i~lwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~ 470 (528)
++++.++....++..+....++.++.+++.+. .-.+..|.+...+.++|++. +++..+ .+++=++
T Consensus 244 n~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~----EF~VvyGfMPAkvtifnlr~-~~v~df--~egpRN~ 316 (566)
T KOG2315|consen 244 NASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGR----EFAVVYGFMPAKVTIFNLRG-KPVFDF--PEGPRNT 316 (566)
T ss_pred CccccccceEEEEEecCceEEEecCCCCCceEEEECCCCC----EEEEEEecccceEEEEcCCC-CEeEeC--CCCCccc
Confidence 57777777667777787778888888888873 12235566677778887764 344443 3667788
Q ss_pred EEEeCCe--EEEEECC---CeEEEEeCCCCccccCC--CccceEEEccCCceEEEeee
Q 009715 471 LIFTQES--VLTVCRE---GHIKIWMRPGVAESQSS--SSETVLSTSSKDKPLLSSKV 521 (528)
Q Consensus 471 l~~s~d~--l~t~s~D---g~i~iW~~~~~~~~~~~--~~~~vl~~spd~~~l~s~~~ 521 (528)
+-|+|.+ |+.+|-+ |.|-|||+...+..... ....+..|+|||+++++++-
T Consensus 317 ~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~tt~~eW~PdGe~flTATT 374 (566)
T KOG2315|consen 317 AFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANTTVFEWSPDGEYFLTATT 374 (566)
T ss_pred eEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCCceEEEEcCCCcEEEEEec
Confidence 9999975 6777754 88999999986644332 33345999999999998854
No 263
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.05 E-value=3.1e-07 Score=92.78 Aligned_cols=293 Identities=14% Similarity=0.050 Sum_probs=168.7
Q ss_pred CCCCeEEEEecCCcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCC
Q 009715 166 KDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGA 245 (528)
Q Consensus 166 ~~~~~l~~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~ 245 (528)
..+..++++..+|.|+.+|..+.. . .+.... .......... ++. .+++++.+|.|+.+|..++..
T Consensus 63 v~~~~v~v~~~~g~v~a~d~~tG~-----~-----~W~~~~--~~~~~~~p~v--~~~-~v~v~~~~g~l~ald~~tG~~ 127 (377)
T TIGR03300 63 VAGGKVYAADADGTVVALDAETGK-----R-----LWRVDL--DERLSGGVGA--DGG-LVFVGTEKGEVIALDAEDGKE 127 (377)
T ss_pred EECCEEEEECCCCeEEEEEccCCc-----E-----eeeecC--CCCcccceEE--cCC-EEEEEcCCCEEEEEECCCCcE
Confidence 356678888888999999876521 1 111110 0000111222 345 688888999999999876321
Q ss_pred CCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECC--CCCEEEEEeCCCcEEEEecCCceEEeeecccCCC
Q 009715 246 GDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST--DGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGA 323 (528)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp--dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~ 323 (528)
...... .+.+.+ +| .+..++.+..++.|..||.++++.+..+......
T Consensus 128 -~W~~~~--------------------------~~~~~~---~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~ 177 (377)
T TIGR03300 128 -LWRAKL--------------------------SSEVLS---PPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPA 177 (377)
T ss_pred -eeeecc--------------------------Cceeec---CCEEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCc
Confidence 111100 011111 11 3456777888999999999999988766532221
Q ss_pred eE-----EEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCC----Ce---EEEEEecCCCCCCCCCCccceeEEE
Q 009715 324 LL-----CCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNS----WV---SGVAFDSYWSQPNSDGTAETVMYRF 391 (528)
Q Consensus 324 v~-----~l~~sp~g~~l~sg~~dg~v~vwd~~~~~~~~~~~~h~~----~V---~~v~f~p~~~~~~~dg~~~~~~~~l 391 (528)
+. .... .+..++.+..++.+..+|.++++.+........ .+ ..+.-.|. -.++ .+
T Consensus 178 ~~~~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~----~~~~-------~v 244 (377)
T TIGR03300 178 LTLRGSASPVI--ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPV----VDGG-------QV 244 (377)
T ss_pred eeecCCCCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccE----EECC-------EE
Confidence 10 1111 124677888889999999999987654331100 00 00000110 0033 67
Q ss_pred EEEeCCCeEEEEEccCCeEEEEeecCCCCCCCeecCCCCCccCCceeeeecCCCCceeeecCCCCceEEeec-CCCCeEE
Q 009715 392 GSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRV-HTEPLSG 470 (528)
Q Consensus 392 ~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~-h~~~V~~ 470 (528)
+.++.++.+..||..+++.+....... ...+ ...+..+.+...++.+..+|..+.+.+-.... .......
T Consensus 245 y~~~~~g~l~a~d~~tG~~~W~~~~~~-~~~p--------~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ss 315 (377)
T TIGR03300 245 YAVSYQGRVAALDLRSGRVLWKRDASS-YQGP--------AVDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTA 315 (377)
T ss_pred EEEEcCCEEEEEECCCCcEEEeeccCC-ccCc--------eEeCCEEEEECCCCeEEEEECCCCcEEEccccccCCcccc
Confidence 778889999999999998887665311 1111 12234556666778888888887776654421 1122233
Q ss_pred EEEeCCeEEEEECCCeEEEEeCCCCccccCC--Cccce-EE-EccCCceEEEeeeecccc
Q 009715 471 LIFTQESVLTVCREGHIKIWMRPGVAESQSS--SSETV-LS-TSSKDKPLLSSKVVTSSY 526 (528)
Q Consensus 471 l~~s~d~l~t~s~Dg~i~iW~~~~~~~~~~~--~~~~v-l~-~spd~~~l~s~~~~gs~~ 526 (528)
.....+.|++++.||.|++||..+++..... +...+ .. +..+ +.|+.++.+|.+|
T Consensus 316 p~i~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~~-~~l~v~~~dG~l~ 374 (377)
T TIGR03300 316 PAVVGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVVG-DGLLVQTRDGDLY 374 (377)
T ss_pred CEEECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEEC-CEEEEEeCCceEE
Confidence 3344567999999999999999877654322 22222 11 1223 3477788787765
No 264
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.03 E-value=2.3e-09 Score=101.30 Aligned_cols=166 Identities=17% Similarity=0.190 Sum_probs=114.9
Q ss_pred ceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCCC
Q 009715 212 RCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDG 291 (528)
Q Consensus 212 ~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spdg 291 (528)
....+..++.++ +||++..+....++++....+.. +.+..... ...-+.+.|..+.
T Consensus 64 a~~~~~~s~~~~-llAv~~~~K~~~~f~~~~~~~~~----------------------kl~~~~~v-~~~~~ai~~~~~~ 119 (390)
T KOG3914|consen 64 APALVLTSDSGR-LVAVATSSKQRAVFDYRENPKGA----------------------KLLDVSCV-PKRPTAISFIRED 119 (390)
T ss_pred cccccccCCCce-EEEEEeCCCceEEEEEecCCCcc----------------------eeeeEeec-ccCcceeeeeecc
Confidence 445566778888 88888888887788776432200 00111100 1223344454444
Q ss_pred CEEEEEe---CCCcEEEEecCCceEEeeecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEee-cCCCCeE
Q 009715 292 TYLATVG---RDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGE-GHNSWVS 367 (528)
Q Consensus 292 ~~l~s~~---~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~~~~~~~-~h~~~V~ 367 (528)
..+..+. +...+.+|....+.+. .+-+|-..++.|+|+||+++|+++..|..|+|-....--.+..+. ||..-|.
T Consensus 120 ~sv~v~dkagD~~~~di~s~~~~~~~-~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS 198 (390)
T KOG3914|consen 120 TSVLVADKAGDVYSFDILSADSGRCE-PILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVS 198 (390)
T ss_pred ceEEEEeecCCceeeeeecccccCcc-hhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhhee
Confidence 4444443 4445556665554443 345799999999999999999999999999998877655555544 7999999
Q ss_pred EEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEEEeec
Q 009715 368 GVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRR 416 (528)
Q Consensus 368 ~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~ 416 (528)
.++.-+ + +.|+++|.|++|++||+++++++..+..
T Consensus 199 ~isl~~-------~-------~~LlS~sGD~tlr~Wd~~sgk~L~t~dl 233 (390)
T KOG3914|consen 199 TISLTD-------N-------YLLLSGSGDKTLRLWDITSGKLLDTCDL 233 (390)
T ss_pred eeeecc-------C-------ceeeecCCCCcEEEEecccCCcccccch
Confidence 999975 3 5799999999999999999998866543
No 265
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.03 E-value=1.2e-09 Score=119.57 Aligned_cols=187 Identities=19% Similarity=0.283 Sum_probs=147.1
Q ss_pred cCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEee-cCCCeEEEEE
Q 009715 209 NNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHI-CQGSINSIAF 287 (528)
Q Consensus 209 h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~ 287 (528)
+-..|.++.=+|... +.++|+.||.|++|....+ ..+..|+. ....|+.+.|
T Consensus 2207 ~v~~v~r~~sHp~~~-~Yltgs~dgsv~~~~w~~~--------------------------~~v~~~rt~g~s~vtr~~f 2259 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSDP-YYLTGSQDGSVRMFEWGHG--------------------------QQVVCFRTAGNSRVTRSRF 2259 (2439)
T ss_pred ccCceeeecCCCCCc-eEEecCCCceEEEEeccCC--------------------------CeEEEeeccCcchhhhhhh
Confidence 445688888899999 8999999999999998652 23333322 2367889999
Q ss_pred CCCCCEEEEEeCCCcEEEEecCCceEEeeecccCCCeEEEEEcCCCCEEEEEe---CCCcEEEEECCCC---eEEEEeec
Q 009715 288 STDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGG---EDDLVQVWSMEDR---KVVAWGEG 361 (528)
Q Consensus 288 spdg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~sg~---~dg~v~vwd~~~~---~~~~~~~~ 361 (528)
+.+|+.+..+..||.+.+|... .++....+.|......+.|-- ..+++++ +++.+.+||..-. .++. ..
T Consensus 2260 ~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~ 2334 (2439)
T KOG1064|consen 2260 NHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TC 2334 (2439)
T ss_pred cccCCceeeeccCCceeecccC-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee--ee
Confidence 9999999999999999999988 666777788888888888864 5566654 4789999997542 2344 67
Q ss_pred CCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEEEeecCCCCCCCeecCCCCCccCCceeeee
Q 009715 362 HNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVG 441 (528)
Q Consensus 362 h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~d~~~~~g 441 (528)
|...+++++|-| .- .+|++|+.+|.|++||++..+.++.+.
T Consensus 2335 H~~gaT~l~~~P-------~~------qllisggr~G~v~l~D~rqrql~h~~~-------------------------- 2375 (2439)
T KOG1064|consen 2335 HDGGATVLAYAP-------KH------QLLISGGRKGEVCLFDIRQRQLRHTFQ-------------------------- 2375 (2439)
T ss_pred cCCCceEEEEcC-------cc------eEEEecCCcCcEEEeehHHHHHHHHhh--------------------------
Confidence 999999999999 55 799999999999999999877654332
Q ss_pred cCCCCceeeecCCCCceEEeecCCCCeEEEEEeCCeEEEEECCCeEEEEeCCCC
Q 009715 442 TLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQESVLTVCREGHIKIWMRPGV 495 (528)
Q Consensus 442 ~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~~s~d~l~t~s~Dg~i~iW~~~~~ 495 (528)
. +. ..+++++++..|.|+||++..-
T Consensus 2376 --------------------------~--~~-~~~~f~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2376 --------------------------A--LD-TREYFVTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred --------------------------h--hh-hhheeeccCcccceEEEEcccc
Confidence 1 22 3457999999999999998754
No 266
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.97 E-value=2.1e-08 Score=92.81 Aligned_cols=258 Identities=12% Similarity=0.149 Sum_probs=160.3
Q ss_pred CCCCCCccccCCcccCCcccCCCCCCcceeeeCCCccEEEEeCCCcEE----EE-eCCCCCCC-----------------
Q 009715 107 GGNGGSKSISGSSRIGSLGASSSSTSMTNTNFDGKGTYIIFNVGDAIF----IS-DLNSQDKD----------------- 164 (528)
Q Consensus 107 gh~~~v~~v~~s~~~~~~~~s~s~~s~~~~~~~~~g~~~~~~~~~~i~----v~-~~~~~~~~----------------- 164 (528)
...+-+.+|.|.. .|.+|++|. .+|++.+|.-.+... ++ .+..++..
T Consensus 23 teadiis~vef~~-~Ge~LatGd----------kgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIr 91 (433)
T KOG1354|consen 23 TEADIISAVEFDH-YGERLATGD----------KGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIR 91 (433)
T ss_pred chhcceeeEEeec-ccceEeecC----------CCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhce
Confidence 3445578888877 676777666 478888776543321 11 11111111
Q ss_pred ---CCCCCeEEEEecCCcEEEEEccccccccc------c---ceeeeeeecc---------------CCcccCCceeEEE
Q 009715 165 ---AKDGHDLLIGLNSGDVYSVSLRQQLQDVG------K---KLVGAHHYNK---------------DGSVNNSRCTSVT 217 (528)
Q Consensus 165 ---~~~~~~l~~g~~~G~v~iwd~~~~~~~~~------~---~~~~~~~~~~---------------~~~~h~~~v~~l~ 217 (528)
..+...++..++|.+|++|-+..+..... + ..+..++... -...|..-|++|.
T Consensus 92 w~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS 171 (433)
T KOG1354|consen 92 WLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSIS 171 (433)
T ss_pred ecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeee
Confidence 45667788999999999998876322110 0 0000000000 0125889999999
Q ss_pred EeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECC-CCCEEEE
Q 009715 218 WVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST-DGTYLAT 296 (528)
Q Consensus 218 ~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp-dg~~l~s 296 (528)
++.|.+ .++++ .|=.|.+|++...... |. +...+..+.+. -+.-|++..|+| ..+.++.
T Consensus 172 ~NsD~E-t~lSA-DdLRINLWnlei~d~s---Fn---------IVDIKP~nmEe------LteVITsaEFhp~~cn~f~Y 231 (433)
T KOG1354|consen 172 VNSDKE-TFLSA-DDLRINLWNLEIIDQS---FN---------IVDIKPANMEE------LTEVITSAEFHPHHCNVFVY 231 (433)
T ss_pred ecCccc-eEeec-cceeeeeccccccCCc---ee---------EEEccccCHHH------HHHHHhhhccCHhHccEEEE
Confidence 999998 55554 5778999998752211 10 00000000000 024578899999 5778888
Q ss_pred EeCCCcEEEEecCCceEEe----ee------------cccCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC-CCCeEEEEe
Q 009715 297 VGRDGYLRVFDYSKEQLIC----GG------------KSYYGALLCCAWSMDGKYILTGGEDDLVQVWSM-EDRKVVAWG 359 (528)
Q Consensus 297 ~~~dg~i~vwd~~~~~~~~----~~------------~~~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~-~~~~~~~~~ 359 (528)
.+..|.|++.|++...+.- .+ ..--..|..+.|+++|+||++-.. -+|++||+ ...+++.++
T Consensus 232 SSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~ 310 (433)
T KOG1354|consen 232 SSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETY 310 (433)
T ss_pred ecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEE
Confidence 9999999999998432110 01 111235788999999999998643 58999999 456777776
Q ss_pred ecCC------------CCe---EEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCe
Q 009715 360 EGHN------------SWV---SGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDE 409 (528)
Q Consensus 360 ~~h~------------~~V---~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~ 409 (528)
+-|. +.| ..++|+. ++ .+++||+.....+++++..+.
T Consensus 311 ~vh~~lr~kLc~lYEnD~IfdKFec~~sg-------~~------~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 311 PVHEYLRSKLCSLYENDAIFDKFECSWSG-------ND------SYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred eehHhHHHHHHHHhhccchhheeEEEEcC-------Cc------ceEecccccceEEEecCCCCc
Confidence 6553 222 2456665 66 689999999999999976654
No 267
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.95 E-value=2.1e-06 Score=83.71 Aligned_cols=228 Identities=14% Similarity=0.083 Sum_probs=135.6
Q ss_pred CCCCCeEEEEec----------CCcEEEEEccccccccccceeeeeeeccC-CcccCCceeEEEEeeCCCcEEEEEe-C-
Q 009715 165 AKDGHDLLIGLN----------SGDVYSVSLRQQLQDVGKKLVGAHHYNKD-GSVNNSRCTSVTWVPGGDGAFVVGH-A- 231 (528)
Q Consensus 165 ~~~~~~l~~g~~----------~G~v~iwd~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~l~~~p~g~~~l~tg~-~- 231 (528)
++|++.|+++.. +..|.+||+.+.. ....+..... .......-..++++|||+ +|++.. .
T Consensus 54 spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~------~~~~i~~p~~p~~~~~~~~~~~~ls~dgk-~l~V~n~~p 126 (352)
T TIGR02658 54 ASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHL------PIADIELPEGPRFLVGTYPWMTSLTPDNK-TLLFYQFSP 126 (352)
T ss_pred CCCCCEEEEEeccccccccCCCCCEEEEEECccCc------EEeEEccCCCchhhccCccceEEECCCCC-EEEEecCCC
Confidence 899999987776 6799999998721 1111111100 000122344789999999 666655 3
Q ss_pred CceEEEEEcCCCCCCCCcccc---------ccccc--------eeEEeccCCCC--CCCeEEEeecCCCe-EEEEECC-C
Q 009715 232 DGNLYVYEKSKDGAGDSSFPV---------IKDQT--------QFSVAHPRYSK--SNPIARWHICQGSI-NSIAFST-D 290 (528)
Q Consensus 232 dg~v~vwd~~~~~~~~~~~~~---------~~~~~--------~~~~~~~~~~~--~~~~~~~~~h~~~v-~~l~~sp-d 290 (528)
+..|-+.|+.+.. ....++. .+... ...+......+ ......++.....+ ..-.|.+ +
T Consensus 127 ~~~V~VvD~~~~k-vv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~d 205 (352)
T TIGR02658 127 SPAVGVVDLEGKA-FVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKS 205 (352)
T ss_pred CCEEEEEECCCCc-EEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCC
Confidence 7899999998732 1111111 00000 00000000000 00111111100000 0014455 8
Q ss_pred CCEEEEEeCCCcEEEEecCCc-----eEEeeecc-------cCCCeEEEEEcCCCCEEEEEe----------CCCcEEEE
Q 009715 291 GTYLATVGRDGYLRVFDYSKE-----QLICGGKS-------YYGALLCCAWSMDGKYILTGG----------EDDLVQVW 348 (528)
Q Consensus 291 g~~l~s~~~dg~i~vwd~~~~-----~~~~~~~~-------~~~~v~~l~~sp~g~~l~sg~----------~dg~v~vw 348 (528)
|+++.+... |.|.+.|+... +.+..+.. ..+...-++++|+++.+.+.. ..+.|.++
T Consensus 206 g~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~Vi 284 (352)
T TIGR02658 206 GRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVV 284 (352)
T ss_pred CcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEE
Confidence 888777766 99999996432 22222211 223445599999999888743 12579999
Q ss_pred ECCCCeEEEEeecCCCCeEEEEEecCCCCCCCCCCccceeE-EEEEEe-CCCeEEEEEccCCeEEEEee
Q 009715 349 SMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMY-RFGSVG-QDTRLLLWDLEMDEIVVPLR 415 (528)
Q Consensus 349 d~~~~~~~~~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~-~l~s~s-~D~~i~lwd~~~~~~~~~~~ 415 (528)
|..+++.+..+. -...+..++++| || + +|++.. .++.|.+.|..+++.+..+.
T Consensus 285 D~~t~kvi~~i~-vG~~~~~iavS~-------Dg------kp~lyvtn~~s~~VsViD~~t~k~i~~i~ 339 (352)
T TIGR02658 285 DAKTGKRLRKIE-LGHEIDSINVSQ-------DA------KPLLYALSTGDKTLYIFDAETGKELSSVN 339 (352)
T ss_pred ECCCCeEEEEEe-CCCceeeEEECC-------CC------CeEEEEeCCCCCcEEEEECcCCeEEeeec
Confidence 999999998887 355799999999 98 4 555554 68899999999999998873
No 268
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.92 E-value=9.5e-07 Score=90.19 Aligned_cols=398 Identities=15% Similarity=0.067 Sum_probs=226.5
Q ss_pred ceeeccCCCCCCCccccCCcccC-CcccCCCCCCcceeeeCCCccEEEEeCCCcEEEEeCCCCCCC---------CCCC-
Q 009715 100 SRTLGFGGGNGGSKSISGSSRIG-SLGASSSSTSMTNTNFDGKGTYIIFNVGDAIFISDLNSQDKD---------AKDG- 168 (528)
Q Consensus 100 ~~~~sf~gh~~~v~~v~~s~~~~-~~~~s~s~~s~~~~~~~~~g~~~~~~~~~~i~v~~~~~~~~~---------~~~~- 168 (528)
.++.+..-|...|+.|.+.|... .-+.|.+..-..++..|..|++++||.--...+..+...... ..+.
T Consensus 46 q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Sr 125 (1062)
T KOG1912|consen 46 QLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSR 125 (1062)
T ss_pred hhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcch
Confidence 34455667888888888877444 223333333455677788999999998776655555543332 3344
Q ss_pred CeEEEEecCCcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCC
Q 009715 169 HDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDS 248 (528)
Q Consensus 169 ~~l~~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~ 248 (528)
..|++=.....|.+||..+. . ..++.+. ......|+.+.|.....|..-+..|.|.+-+.-.......
T Consensus 126 d~LlaIh~ss~lvLwntdtG-----~-----k~Wk~~y--s~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~ 193 (1062)
T KOG1912|consen 126 DVLLAIHGSSTLVLWNTDTG-----E-----KFWKYDY--SHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDV 193 (1062)
T ss_pred heeEEecCCcEEEEEEccCC-----c-----eeecccc--CCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCC
Confidence 45555566678999987762 1 2233322 3345778999997765666666677777776532111111
Q ss_pred ---cccccccc---ceeEEecc--C-CCCCCCeEEEeecCCCeEEEEECCCCCEEEEEeCCCcEEEEecCCceEEeeecc
Q 009715 249 ---SFPVIKDQ---TQFSVAHP--R-YSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKS 319 (528)
Q Consensus 249 ---~~~~~~~~---~~~~~~~~--~-~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 319 (528)
.++...+. ........ . .....+-..+- .-...++|+|.-+.++.......+.++|++-..++....-
T Consensus 194 pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fi---ty~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpi 270 (1062)
T KOG1912|consen 194 PGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFI---TYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPI 270 (1062)
T ss_pred CceeEEEecCccchhhhhhhhhccccccCCCcchhHH---HHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEe
Confidence 11100000 00000000 0 00000000000 0122467889766666666778899999998888877666
Q ss_pred cCCCeEEEEEcCCCC--EEEEEeCCCcEEEEECCCCeE-----EEEee-cCCCCeEEEEEe----cC--CCCCCCCCCcc
Q 009715 320 YYGALLCCAWSMDGK--YILTGGEDDLVQVWSMEDRKV-----VAWGE-GHNSWVSGVAFD----SY--WSQPNSDGTAE 385 (528)
Q Consensus 320 ~~~~v~~l~~sp~g~--~l~sg~~dg~v~vwd~~~~~~-----~~~~~-~h~~~V~~v~f~----p~--~~~~~~dg~~~ 385 (528)
..+.+.-+.|-|+++ .|+..-.||.+.+|-.+.... .+.+. .-...+.+++-- |. ...|.+ .
T Consensus 271 er~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~-~--- 346 (1062)
T KOG1912|consen 271 ERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPST-P--- 346 (1062)
T ss_pred ccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccceeecCCCC-h---
Confidence 667777888988765 688899999999997654211 11111 011222222211 10 000110 1
Q ss_pred ceeEEEEEEeCCCeEEEEEccCCeEEEEeecCC---------C--------CCCCeecCCC-------------------
Q 009715 386 TVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGP---------L--------GGSPTFSTGS------------------- 429 (528)
Q Consensus 386 ~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~---------~--------~~~~~~s~~~------------------- 429 (528)
..++.--.++.+.+|.+++++......... . ..-+.++.++
T Consensus 347 ---sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~ 423 (1062)
T KOG1912|consen 347 ---SALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTK 423 (1062)
T ss_pred ---hhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccCceeehhhccccchhhcCCCCCCceeeecccCcccce
Confidence 123333356778888888655322111100 0 0001111121
Q ss_pred -------C-CccCCceeeeecCCCCceeeecCCCCceEEeecCCCCeEEEEEeCCe-EEEEEC----------CCeEEEE
Q 009715 430 -------Q-SAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES-VLTVCR----------EGHIKIW 490 (528)
Q Consensus 430 -------~-~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~~s~d~-l~t~s~----------Dg~i~iW 490 (528)
. .......+++|+..+.+.++|+.+......+..|...|.++.|.-.. |++.+. -+.+.+=
T Consensus 424 ~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vt 503 (1062)
T KOG1912|consen 424 VENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVT 503 (1062)
T ss_pred eecCCCCCccceeeeeEEeecCCceEEEEEecchhhhhhhcccccceeeeeeccceeEEEeeeccccccccceeeeEEEE
Confidence 1 12223345899999999999999999999999999999999998764 555443 2457777
Q ss_pred eCCCCccccC-----CCccce--EEEccCCceEEEe
Q 009715 491 MRPGVAESQS-----SSSETV--LSTSSKDKPLLSS 519 (528)
Q Consensus 491 ~~~~~~~~~~-----~~~~~v--l~~spd~~~l~s~ 519 (528)
|++++....+ .....| +.+|.-++||+..
T Consensus 504 dLrtGlsk~fR~l~~~despI~~irvS~~~~yLai~ 539 (1062)
T KOG1912|consen 504 DLRTGLSKRFRGLQKPDESPIRAIRVSSSGRYLAIL 539 (1062)
T ss_pred EcccccccccccCCCCCcCcceeeeecccCceEEEE
Confidence 8887763332 233344 7889999999865
No 269
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.92 E-value=7e-07 Score=80.31 Aligned_cols=200 Identities=15% Similarity=0.044 Sum_probs=133.4
Q ss_pred CCCeEEEEecCCcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCC
Q 009715 167 DGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAG 246 (528)
Q Consensus 167 ~~~~l~~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~ 246 (528)
.-.+|+.|++.|+..+|...+..- .. +..+ .|...|+-+.=.-+.+-.+..++.|.++++.+++.+...
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~---h~------~~cd--~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~ 151 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDG---HL------YQCD--VSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNK 151 (344)
T ss_pred cccEEEeccccceeeeecccCccc---ce------eeec--ccccchhhhhhhcccccceeeccCCcceeEEEEecCccc
Confidence 445789999999999999875210 00 0000 133323222222233335777888999999988742110
Q ss_pred CCccccccccceeEEeccCCCCCCCeEEEeecC--CCeEEEEECCCCCEEEEEeCCCcEEEEecCCce-E-Ee-eecccC
Q 009715 247 DSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQ--GSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQ-L-IC-GGKSYY 321 (528)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~--~~v~~l~~spdg~~l~s~~~dg~i~vwd~~~~~-~-~~-~~~~~~ 321 (528)
...|. -.+.++.+++|++++++.++...|..|.+.... . +. ....-.
T Consensus 152 ----------------------------~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~ 203 (344)
T KOG4532|consen 152 ----------------------------FAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTS 203 (344)
T ss_pred ----------------------------ceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccC
Confidence 01111 237789999999999999999999999887432 2 22 223334
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE-EE----EeecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeC
Q 009715 322 GALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKV-VA----WGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQ 396 (528)
Q Consensus 322 ~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~~-~~----~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~ 396 (528)
+.-.+..|+.....+|++..||.+.|||++.... .. +-..|.+.+..+.|++ -| ...+|+-.-.
T Consensus 204 D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl-------~g----~lDLLf~sEh 272 (344)
T KOG4532|consen 204 DHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSL-------YG----LLDLLFISEH 272 (344)
T ss_pred CCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecC-------CC----cceEEEEecC
Confidence 5567899999999999999999999999987532 22 2235899999999998 33 1134555555
Q ss_pred CCeEEEEEccCCeEEEEeec
Q 009715 397 DTRLLLWDLEMDEIVVPLRR 416 (528)
Q Consensus 397 D~~i~lwd~~~~~~~~~~~~ 416 (528)
-+.+.+-|+++++..+.+.-
T Consensus 273 fs~~hv~D~R~~~~~q~I~i 292 (344)
T KOG4532|consen 273 FSRVHVVDTRNYVNHQVIVI 292 (344)
T ss_pred cceEEEEEcccCceeeEEec
Confidence 67899999999887666543
No 270
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.92 E-value=1.8e-06 Score=97.18 Aligned_cols=227 Identities=11% Similarity=0.088 Sum_probs=133.6
Q ss_pred ceeEEEEeeCCCcEEEEE-eCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECC-
Q 009715 212 RCTSVTWVPGGDGAFVVG-HADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST- 289 (528)
Q Consensus 212 ~v~~l~~~p~g~~~l~tg-~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp- 289 (528)
....|++++++. .|+++ .....|+++|+.... ...+...... ... .. ......... -.....++|+|
T Consensus 625 ~P~GIavd~~gn-~LYVaDt~n~~Ir~id~~~~~--V~tlag~G~~-g~~--~~-gg~~~~~~~----ln~P~gVa~dp~ 693 (1057)
T PLN02919 625 RPQGLAYNAKKN-LLYVADTENHALREIDFVNET--VRTLAGNGTK-GSD--YQ-GGKKGTSQV----LNSPWDVCFEPV 693 (1057)
T ss_pred CCcEEEEeCCCC-EEEEEeCCCceEEEEecCCCE--EEEEeccCcc-cCC--CC-CChhhhHhh----cCCCeEEEEecC
Confidence 467899999887 55554 455789999976421 1111000000 000 00 000000000 12345899999
Q ss_pred CCCEEEEEeCCCcEEEEecCCceEEeee--------cc------cCCCeEEEEEcCCCCEE-EEEeCCCcEEEEECCCCe
Q 009715 290 DGTYLATVGRDGYLRVFDYSKEQLICGG--------KS------YYGALLCCAWSMDGKYI-LTGGEDDLVQVWSMEDRK 354 (528)
Q Consensus 290 dg~~l~s~~~dg~i~vwd~~~~~~~~~~--------~~------~~~~v~~l~~sp~g~~l-~sg~~dg~v~vwd~~~~~ 354 (528)
++.++++...++.|++||..++...... .+ .......|+++|+++.| ++-..++.|++||++++.
T Consensus 694 ~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~ 773 (1057)
T PLN02919 694 NEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGG 773 (1057)
T ss_pred CCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCc
Confidence 5666677778899999999877543210 00 01234579999999854 455667899999998765
Q ss_pred EEEEeec-------------C--------CCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEEE
Q 009715 355 VVAWGEG-------------H--------NSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVP 413 (528)
Q Consensus 355 ~~~~~~~-------------h--------~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~ 413 (528)
......+ + -....+++|++ +| .++++...+++|++||..++.....
T Consensus 774 ~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~-------dG------~LYVADs~N~rIrviD~~tg~v~ti 840 (1057)
T PLN02919 774 SRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAK-------DG------QIYVADSYNHKIKKLDPATKRVTTL 840 (1057)
T ss_pred EEEEEecccccCcccccccCCCCchhhhhccCCceeeEeC-------CC------cEEEEECCCCEEEEEECCCCeEEEE
Confidence 3211100 0 11245888888 88 6888889999999999988766533
Q ss_pred eecCCCCCCCeecCCCCCccCCceeeeecCCCCceeeecCCCCceEEeecCCCCeEEEEEeCCe--EEEEECCCeEEEEe
Q 009715 414 LRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWM 491 (528)
Q Consensus 414 ~~~~~~~~~~~~s~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~~s~d~--l~t~s~Dg~i~iW~ 491 (528)
...+... + .++ . ...+.-.....|++++++ +++-+.++.|++||
T Consensus 841 aG~G~~G----~-~dG--------------------------~---~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid 886 (1057)
T PLN02919 841 AGTGKAG----F-KDG--------------------------K---ALKAQLSEPAGLALGENGRLFVADTNNSLIRYLD 886 (1057)
T ss_pred eccCCcC----C-CCC--------------------------c---ccccccCCceEEEEeCCCCEEEEECCCCEEEEEE
Confidence 2211000 0 000 0 011222346789999985 67777889999999
Q ss_pred CCCCc
Q 009715 492 RPGVA 496 (528)
Q Consensus 492 ~~~~~ 496 (528)
+.++.
T Consensus 887 ~~~~~ 891 (1057)
T PLN02919 887 LNKGE 891 (1057)
T ss_pred CCCCc
Confidence 97764
No 271
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.89 E-value=1.1e-05 Score=76.15 Aligned_cols=208 Identities=16% Similarity=0.218 Sum_probs=126.7
Q ss_pred CCCCCeEEEEecC---CcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEE-eCCceEEEEEc
Q 009715 165 AKDGHDLLIGLNS---GDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVG-HADGNLYVYEK 240 (528)
Q Consensus 165 ~~~~~~l~~g~~~---G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg-~~dg~v~vwd~ 240 (528)
+++++.|.++-.+ |.|..|.+.... + .+.+.........+-.-++++++|+ +++++ ..-|.|.++.+
T Consensus 48 ~~~~~~LY~v~~~~~~ggvaay~iD~~~---G-----~Lt~ln~~~~~g~~p~yvsvd~~g~-~vf~AnY~~g~v~v~p~ 118 (346)
T COG2706 48 NPDQRHLYVVNEPGEEGGVAAYRIDPDD---G-----RLTFLNRQTLPGSPPCYVSVDEDGR-FVFVANYHSGSVSVYPL 118 (346)
T ss_pred CCCCCEEEEEEecCCcCcEEEEEEcCCC---C-----eEEEeeccccCCCCCeEEEECCCCC-EEEEEEccCceEEEEEc
Confidence 7888888776654 667777665310 0 1112222222333347799999999 55555 46689999999
Q ss_pred CCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCCCCEEEEEeC-CCcEEEEecCCceEEeeec-
Q 009715 241 SKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGR-DGYLRVFDYSKEQLICGGK- 318 (528)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~~~-dg~i~vwd~~~~~~~~~~~- 318 (528)
+.++............. . .+. . +.-...+....|.|++++|++... --.|.+|+++.+++...-.
T Consensus 119 ~~dG~l~~~v~~~~h~g--------~---~p~-~-rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~ 185 (346)
T COG2706 119 QADGSLQPVVQVVKHTG--------S---GPH-E-RQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPA 185 (346)
T ss_pred ccCCccccceeeeecCC--------C---CCC-c-cccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCcccccccc
Confidence 87665433322221110 0 000 0 000123788999999999998863 2369999999776532211
Q ss_pred --ccCCCeEEEEEcCCCCEEEEEeC-CCcEEEEECCCC-eEEEEeec---------CCCCeEEEEEecCCCCCCCCCCcc
Q 009715 319 --SYYGALLCCAWSMDGKYILTGGE-DDLVQVWSMEDR-KVVAWGEG---------HNSWVSGVAFDSYWSQPNSDGTAE 385 (528)
Q Consensus 319 --~~~~~v~~l~~sp~g~~l~sg~~-dg~v~vwd~~~~-~~~~~~~~---------h~~~V~~v~f~p~~~~~~~dg~~~ 385 (528)
.-...-+-|.|+|++++....++ +++|.+|..+.. ..+..++. -..+..+|..+| ||
T Consensus 186 ~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~-------dG--- 255 (346)
T COG2706 186 EVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISP-------DG--- 255 (346)
T ss_pred ccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECC-------CC---
Confidence 12355678999999998877665 899999998873 22222221 245778888999 99
Q ss_pred ceeEEEEEEe-CCCeEEEEEccC
Q 009715 386 TVMYRFGSVG-QDTRLLLWDLEM 407 (528)
Q Consensus 386 ~~~~~l~s~s-~D~~i~lwd~~~ 407 (528)
++|.++- ....|-+|.+..
T Consensus 256 ---rFLYasNRg~dsI~~f~V~~ 275 (346)
T COG2706 256 ---RFLYASNRGHDSIAVFSVDP 275 (346)
T ss_pred ---CEEEEecCCCCeEEEEEEcC
Confidence 4554442 334666666543
No 272
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.88 E-value=1.5e-06 Score=81.84 Aligned_cols=185 Identities=15% Similarity=0.150 Sum_probs=123.6
Q ss_pred CCeEEEEECCCCCEEEEEeCC---CcEEEEecCC--ceEEee--ecccCCCeEEEEEcCCCCEEEEEeC-CCcEEEEECC
Q 009715 280 GSINSIAFSTDGTYLATVGRD---GYLRVFDYSK--EQLICG--GKSYYGALLCCAWSMDGKYILTGGE-DDLVQVWSME 351 (528)
Q Consensus 280 ~~v~~l~~spdg~~l~s~~~d---g~i~vwd~~~--~~~~~~--~~~~~~~v~~l~~sp~g~~l~sg~~-dg~v~vwd~~ 351 (528)
+.++-|+|+|+.+.|.++..+ |.|-.|.++. |++-.. ......+-.-++++++|++++++.. -|.|.++-++
T Consensus 40 ~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~ 119 (346)
T COG2706 40 GNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQ 119 (346)
T ss_pred CCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcc
Confidence 667789999999999888654 6777777764 554321 1112234477999999999998765 6789999986
Q ss_pred C-CeE---EEEeecCCCC----------eEEEEEecCCCCCCCCCCccceeEEEEEEe-CCCeEEEEEccCCeEEEEeec
Q 009715 352 D-RKV---VAWGEGHNSW----------VSGVAFDSYWSQPNSDGTAETVMYRFGSVG-QDTRLLLWDLEMDEIVVPLRR 416 (528)
Q Consensus 352 ~-~~~---~~~~~~h~~~----------V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s-~D~~i~lwd~~~~~~~~~~~~ 416 (528)
. |.+ +..+ .|.+. +....|.| ++ ++|+++. .--+|.+|++..++....-..
T Consensus 120 ~dG~l~~~v~~~-~h~g~~p~~rQ~~~h~H~a~~tP-------~~------~~l~v~DLG~Dri~~y~~~dg~L~~~~~~ 185 (346)
T COG2706 120 ADGSLQPVVQVV-KHTGSGPHERQESPHVHSANFTP-------DG------RYLVVPDLGTDRIFLYDLDDGKLTPADPA 185 (346)
T ss_pred cCCccccceeee-ecCCCCCCccccCCccceeeeCC-------CC------CEEEEeecCCceEEEEEcccCcccccccc
Confidence 6 432 2333 25554 88999999 98 5676665 234799999986654321111
Q ss_pred CCCCCCCeecCCCCCccCCceeeeecCCCCceeeecCCCCceEEeecCCCCeEEEEEeCCe---EEEEECCCeEEEEeCC
Q 009715 417 GPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES---VLTVCREGHIKIWMRP 493 (528)
Q Consensus 417 ~~~~~~~~~s~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~~s~d~---l~t~s~Dg~i~iW~~~ 493 (528)
.+ .....-+.|+|+|++ .+..-.+++|-+|...
T Consensus 186 -------------------------------------------~v-~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~ 221 (346)
T COG2706 186 -------------------------------------------EV-KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYN 221 (346)
T ss_pred -------------------------------------------cc-CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEc
Confidence 00 123445789999985 4566689999999987
Q ss_pred CC--ccccC--------CCccc----eEEEccCCceEEEeeee
Q 009715 494 GV--AESQS--------SSSET----VLSTSSKDKPLLSSKVV 522 (528)
Q Consensus 494 ~~--~~~~~--------~~~~~----vl~~spd~~~l~s~~~~ 522 (528)
.. +.... ...+. -+.++||||+|.+++..
T Consensus 222 ~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg 264 (346)
T COG2706 222 PAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRG 264 (346)
T ss_pred CCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCC
Confidence 63 21111 11221 28889999999998776
No 273
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.86 E-value=5e-08 Score=87.16 Aligned_cols=214 Identities=16% Similarity=0.174 Sum_probs=123.6
Q ss_pred EEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCCCCEEEE
Q 009715 217 TWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLAT 296 (528)
Q Consensus 217 ~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s 296 (528)
+.+-.+. .++++..||.+.+++.+..-......+... ..-.+.++...++.|.+
T Consensus 96 ~~s~~~t-~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~-------------------------~~~as~~~~~~~~~i~s 149 (319)
T KOG4714|consen 96 ACTMTDN-RVCIGYADGSLAVFSTDKDLALMSRIPSIH-------------------------SGSASRKICRHGNSILS 149 (319)
T ss_pred cccccCC-ceEecCCCceEEEEechHHHhhhhhccccc-------------------------ccccccceeecccEEec
Confidence 3333444 699999999999999875221111111100 01112222223444433
Q ss_pred Ee-----CCCcEEEEecCCceEEeeecccCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCe-EEEEeecCCCCeEEE
Q 009715 297 VG-----RDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGK-YILTGGEDDLVQVWSMEDRK-VVAWGEGHNSWVSGV 369 (528)
Q Consensus 297 ~~-----~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~g~-~l~sg~~dg~v~vwd~~~~~-~~~~~~~h~~~V~~v 369 (528)
+. .-+..+.|+++..+.+..-+.-...|.+++-+|..+ ++++|++||.+.+||++... ++..+..|...++.|
T Consensus 150 ~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV 229 (319)
T KOG4714|consen 150 GGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEV 229 (319)
T ss_pred CCcceEeeccceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhhe
Confidence 22 224567777764433222222234499999999655 56678889999999999864 455667899999999
Q ss_pred EEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEEEeecCCCCCCCeecCCCCCccCCceeeeecCCCCcee
Q 009715 370 AFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSM 449 (528)
Q Consensus 370 ~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~d~~~~~g~~~~~~~~ 449 (528)
-|+|. ++ ..|+++++||.+..||..+. .+. +.......+..++.+- .-..
T Consensus 230 ~FHpk------~p------~~Lft~sedGslw~wdas~~-~l~-i~~~~s~~s~WLsgD~----------------v~s~ 279 (319)
T KOG4714|consen 230 HFHPK------NP------EHLFTCSEDGSLWHWDASTT-FLS-ISNQASVISSWLSGDP----------------VKSR 279 (319)
T ss_pred eccCC------Cc------hheeEecCCCcEEEEcCCCc-eEE-ecCccccccccccCCc----------------ccce
Confidence 99993 55 57999999999999997752 111 1111111111111111 0000
Q ss_pred eecCCCCceEEeecCCCCeEEEEEeCCeEEEEECCCeEEEEe
Q 009715 450 RDVPKLSPLVAHRVHTEPLSGLIFTQESVLTVCREGHIKIWM 491 (528)
Q Consensus 450 ~d~~~~~~~~~~~~h~~~V~~l~~s~d~l~t~s~Dg~i~iW~ 491 (528)
.++. ++ +....-.|+++...-+.|++|+.-+.|++.+
T Consensus 280 i~i~---~l--l~~~~~SinsfDV~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 280 IEIT---SL--LPSRSLSINSFDVLGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred Eeee---cc--ccccceeeeeeeccCceEEeccccceEEEec
Confidence 0111 11 1112335677777777899999888888865
No 274
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.86 E-value=3.7e-07 Score=92.17 Aligned_cols=279 Identities=16% Similarity=0.148 Sum_probs=167.8
Q ss_pred CCCCeEEEEecCCcEEEEEccccccccccc---eeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCC
Q 009715 166 KDGHDLLIGLNSGDVYSVSLRQQLQDVGKK---LVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSK 242 (528)
Q Consensus 166 ~~~~~l~~g~~~G~v~iwd~~~~~~~~~~~---~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~ 242 (528)
....++++|+.||.+++.-+.++..+..++ ....+..+....+|+..|.-+.|+.+.+ .|-+...+|.|.||-+-+
T Consensus 24 ke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~Q-KLTtSDt~GlIiVWmlyk 102 (1189)
T KOG2041|consen 24 KESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQ-KLTTSDTSGLIIVWMLYK 102 (1189)
T ss_pred ccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccc-cccccCCCceEEEEeeec
Confidence 667899999999999999888753332222 2234556666778999999999999988 899999999999999876
Q ss_pred CCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCCCCEEEEEeCCCcEEEEecCCceEEeeecccCC
Q 009715 243 DGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYG 322 (528)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 322 (528)
+.-.+ .+. .+. ...-|.+++|+.||..++....||.|.+=.++.. .+..-.-...
T Consensus 103 gsW~E-EMi--NnR---------------------nKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGN-RIwgKeLkg~ 157 (1189)
T KOG2041|consen 103 GSWCE-EMI--NNR---------------------NKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGN-RIWGKELKGQ 157 (1189)
T ss_pred ccHHH-HHh--hCc---------------------CccEEEEEEEcCCCcEEEEEEccCCEEEEeeccc-eecchhcchh
Confidence 32110 000 000 1256889999999999999999999999888743 3322111112
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCC-------eEEEEee----cCCCCeEEEEEecCCCCC-CCCCCccceeEE
Q 009715 323 ALLCCAWSMDGKYILTGGEDDLVQVWSMEDR-------KVVAWGE----GHNSWVSGVAFDSYWSQP-NSDGTAETVMYR 390 (528)
Q Consensus 323 ~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~-------~~~~~~~----~h~~~V~~v~f~p~~~~~-~~dg~~~~~~~~ 390 (528)
-...+.|++|.+.++.+-.+|.+.+||.+.. .+..... .....|-.+.|..-...| .+|- .+
T Consensus 158 ~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdr------P~ 231 (1189)
T KOG2041|consen 158 LLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDR------PR 231 (1189)
T ss_pred eccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCC------CE
Confidence 2346889999999999999999999997642 1211111 112235666665322222 1244 57
Q ss_pred EEEEeCCCeEEEEEccCCeEEEEeecCCCCCCCeecCCCCC---ccCCceeeeecCCCCceeeecCCCCceEEeecCCCC
Q 009715 391 FGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQS---AHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEP 467 (528)
Q Consensus 391 l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~s~~~~~---~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~ 467 (528)
|+.+-..|.+.|-.-.....-..+..+-.+....++++|.. ...+.. +....+....-+-.+-++.+.+++.....
T Consensus 232 lavcy~nGr~QiMR~eND~~Pvv~dtgm~~vgakWnh~G~vLAvcG~~~d-a~~~~d~n~v~Fysp~G~i~gtlkvpg~~ 310 (1189)
T KOG2041|consen 232 LAVCYANGRMQIMRSENDPEPVVVDTGMKIVGAKWNHNGAVLAVCGNDSD-ADEPTDSNKVHFYSPYGHIVGTLKVPGSC 310 (1189)
T ss_pred EEEEEcCceehhhhhcCCCCCeEEecccEeecceecCCCcEEEEccCccc-ccCccccceEEEeccchhheEEEecCCce
Confidence 88888888887754333322222222222333344444420 000000 00000111111223344556667777777
Q ss_pred eEEEEEeCCe
Q 009715 468 LSGLIFTQES 477 (528)
Q Consensus 468 V~~l~~s~d~ 477 (528)
|+++.|-..+
T Consensus 311 It~lsWEg~g 320 (1189)
T KOG2041|consen 311 ITGLSWEGTG 320 (1189)
T ss_pred eeeeEEcCCc
Confidence 8888876543
No 275
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.83 E-value=3.9e-06 Score=94.56 Aligned_cols=173 Identities=14% Similarity=0.144 Sum_probs=112.0
Q ss_pred eeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCCCC
Q 009715 213 CTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGT 292 (528)
Q Consensus 213 v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spdg~ 292 (528)
-+.++|+|++..++++...++.|++||...... ..+.. ... ........ .....-.....|+|+|++.
T Consensus 685 P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v--~~~~G--~G~------~~~~~g~~--~~~~~~~~P~GIavspdG~ 752 (1057)
T PLN02919 685 PWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVT--RVFSG--DGY------ERNLNGSS--GTSTSFAQPSGISLSPDLK 752 (1057)
T ss_pred CeEEEEecCCCeEEEEECCCCeEEEEECCCCeE--EEEec--CCc------cccCCCCc--cccccccCccEEEEeCCCC
Confidence 468999995443777778889999999864211 00000 000 00000000 0000113567899999988
Q ss_pred EEE-EEeCCCcEEEEecCCceEEeeec-------------c--------cCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 009715 293 YLA-TVGRDGYLRVFDYSKEQLICGGK-------------S--------YYGALLCCAWSMDGKYILTGGEDDLVQVWSM 350 (528)
Q Consensus 293 ~l~-s~~~dg~i~vwd~~~~~~~~~~~-------------~--------~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~ 350 (528)
+|+ +-..++.|++||++++....... . .......++++++|.++++-..++.|++||.
T Consensus 753 ~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~ 832 (1057)
T PLN02919 753 ELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDP 832 (1057)
T ss_pred EEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEEC
Confidence 555 44567899999998765321100 0 0112458899999998888888999999999
Q ss_pred CCCeEEEEee-------------cCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeE
Q 009715 351 EDRKVVAWGE-------------GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEI 410 (528)
Q Consensus 351 ~~~~~~~~~~-------------~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~ 410 (528)
.++....... +.-.....|++++ +| .++++.+.+++|++||+.+++.
T Consensus 833 ~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~-------dG------~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 833 ATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGE-------NG------RLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred CCCeEEEEeccCCcCCCCCcccccccCCceEEEEeC-------CC------CEEEEECCCCEEEEEECCCCcc
Confidence 8876543221 1123577899999 99 6888889999999999998865
No 276
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.82 E-value=1.8e-06 Score=95.41 Aligned_cols=215 Identities=19% Similarity=0.274 Sum_probs=133.1
Q ss_pred CCCCCeEEEEecCCcEEEE----EccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeCCceEEEEEc
Q 009715 165 AKDGHDLLIGLNSGDVYSV----SLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEK 240 (528)
Q Consensus 165 ~~~~~~l~~g~~~G~v~iw----d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~ 240 (528)
.++...++++..+|+|.++ +.... ....... -...|.|++|+||++ +|+....+++|.+...
T Consensus 84 l~d~~~l~~~~~~Gdi~~~~~~~~~~~~------~~E~VG~-------vd~GI~a~~WSPD~E-lla~vT~~~~l~~mt~ 149 (928)
T PF04762_consen 84 LADSESLCIALASGDIILVREDPDPDED------EIEIVGS-------VDSGILAASWSPDEE-LLALVTGEGNLLLMTR 149 (928)
T ss_pred ccCCCcEEEEECCceEEEEEccCCCCCc------eeEEEEE-------EcCcEEEEEECCCcC-EEEEEeCCCEEEEEec
Confidence 4688889999999999999 44331 1111111 456799999999999 8999999999988764
Q ss_pred CCCCCCCCccccc--cccceeEEe--------ccCCCC------CCCe------EEEeecCCCeEEEEECCCCCEEEEEe
Q 009715 241 SKDGAGDSSFPVI--KDQTQFSVA--------HPRYSK------SNPI------ARWHICQGSINSIAFSTDGTYLATVG 298 (528)
Q Consensus 241 ~~~~~~~~~~~~~--~~~~~~~~~--------~~~~~~------~~~~------~~~~~h~~~v~~l~~spdg~~l~s~~ 298 (528)
+-+.-.+..+... .......++ +.+..+ ..+. .... +...-..|+|-.||+++|+.+
T Consensus 150 ~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss 228 (928)
T PF04762_consen 150 DFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSS 228 (928)
T ss_pred cceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEE
Confidence 3321111111100 000001111 011011 0110 1122 345667899999999999987
Q ss_pred C---C---CcEEEEecCCceEEeeecccCCCeEEEEEcCCCCEEEEEeC---CCcEEEEECCC---CeEEEEeecCCCCe
Q 009715 299 R---D---GYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGE---DDLVQVWSMED---RKVVAWGEGHNSWV 366 (528)
Q Consensus 299 ~---d---g~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~sg~~---dg~v~vwd~~~---~~~~~~~~~h~~~V 366 (528)
- . ..+|||+-+ |++...-..-.+--.+++|.|.|.+||+.-. ...|.+|.-+. ++....+......|
T Consensus 229 ~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v 307 (928)
T PF04762_consen 229 VEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKV 307 (928)
T ss_pred EEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCcee
Confidence 4 2 479999976 7665544433444457899999999998754 34566776332 22222222456689
Q ss_pred EEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCe
Q 009715 367 SGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDE 409 (528)
Q Consensus 367 ~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~ 409 (528)
..+.|++ |+ ..|+..-.|. |.+|-..+..
T Consensus 308 ~~l~Wn~-------ds------~iLAv~~~~~-vqLWt~~NYH 336 (928)
T PF04762_consen 308 IELAWNS-------DS------EILAVWLEDR-VQLWTRSNYH 336 (928)
T ss_pred eEEEECC-------CC------CEEEEEecCC-ceEEEeeCCE
Confidence 9999999 88 5777766554 9999887765
No 277
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.78 E-value=4.7e-06 Score=80.70 Aligned_cols=139 Identities=14% Similarity=0.161 Sum_probs=112.2
Q ss_pred cCCCeEEEEECCCCCEEEEEeCCC-cEEEEecCCceEEeeecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEE
Q 009715 278 CQGSINSIAFSTDGTYLATVGRDG-YLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVV 356 (528)
Q Consensus 278 h~~~v~~l~~spdg~~l~s~~~dg-~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~~~ 356 (528)
|.+.|.-..+..+++-++.|..|| .|-|+|..+++... +...-+.|.++..+|+|++++.+.....|.+.|++++...
T Consensus 358 ~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr-~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~ 436 (668)
T COG4946 358 KKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKR-IEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVR 436 (668)
T ss_pred CCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEE-eeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCee
Confidence 346677788888888899999999 89999999877544 4445688999999999999999999999999999999876
Q ss_pred EEeecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCC----CeEEEEEccCCeEEEEeecCCCCCCCeecCCCC
Q 009715 357 AWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQD----TRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQ 430 (528)
Q Consensus 357 ~~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D----~~i~lwd~~~~~~~~~~~~~~~~~~~~~s~~~~ 430 (528)
..-+...+-|+.++|+| ++ ++++-+--+ ..|+++|+..++............+.+|.+++.
T Consensus 437 ~idkS~~~lItdf~~~~-------ns------r~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~r 501 (668)
T COG4946 437 LIDKSEYGLITDFDWHP-------NS------RWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGR 501 (668)
T ss_pred EecccccceeEEEEEcC-------Cc------eeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCc
Confidence 55555677899999999 88 566665444 479999999998876665556667778877774
No 278
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.77 E-value=6.7e-08 Score=91.56 Aligned_cols=156 Identities=15% Similarity=0.157 Sum_probs=108.8
Q ss_pred CeEEEEECCCCCEEEEEeCCCcEEEEecCCceE----EeeecccCCCeEEEEEcCCCCEEEE---EeCCCcEEEEECCCC
Q 009715 281 SINSIAFSTDGTYLATVGRDGYLRVFDYSKEQL----ICGGKSYYGALLCCAWSMDGKYILT---GGEDDLVQVWSMEDR 353 (528)
Q Consensus 281 ~v~~l~~spdg~~l~s~~~dg~i~vwd~~~~~~----~~~~~~~~~~v~~l~~sp~g~~l~s---g~~dg~v~vwd~~~~ 353 (528)
.+..+.+++.+++||++..+....++++..... +... .-...-..+.+..+...... .++...+.+|....+
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~-~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~ 142 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVS-CVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSG 142 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEe-ecccCcceeeeeeccceEEEEeecCCceeeeeeccccc
Confidence 445567788899999999888888888764432 2211 11222334444444444443 344556666766655
Q ss_pred eEEEEeecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEEEeecCCCCCCCeecCCCCCcc
Q 009715 354 KVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAH 433 (528)
Q Consensus 354 ~~~~~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 433 (528)
.+.. +-||-+-+++|+|+| |+ .+++++..|..|++-.+..--.+..+
T Consensus 143 ~~~~-~lGhvSml~dVavS~-------D~------~~IitaDRDEkIRvs~ypa~f~Iesf------------------- 189 (390)
T KOG3914|consen 143 RCEP-ILGHVSMLLDVAVSP-------DD------QFIITADRDEKIRVSRYPATFVIESF------------------- 189 (390)
T ss_pred Ccch-hhhhhhhhheeeecC-------CC------CEEEEecCCceEEEEecCcccchhhh-------------------
Confidence 4433 447999999999999 98 79999999999998765432222111
Q ss_pred CCceeeeecCCCCceeeecCCCCceEEeecCCCCeEEEEEeCCe-EEEEECCCeEEEEeCCCCcc
Q 009715 434 WDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES-VLTVCREGHIKIWMRPGVAE 497 (528)
Q Consensus 434 ~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~~s~d~-l~t~s~Dg~i~iW~~~~~~~ 497 (528)
.-||++-|..++.-+++ |+++|.|++|++||+..++.
T Consensus 190 ---------------------------clGH~eFVS~isl~~~~~LlS~sGD~tlr~Wd~~sgk~ 227 (390)
T KOG3914|consen 190 ---------------------------CLGHKEFVSTISLTDNYLLLSGSGDKTLRLWDITSGKL 227 (390)
T ss_pred ---------------------------ccccHhheeeeeeccCceeeecCCCCcEEEEecccCCc
Confidence 12799999999999987 79999999999999987763
No 279
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.77 E-value=4.4e-05 Score=74.61 Aligned_cols=238 Identities=8% Similarity=-0.009 Sum_probs=128.4
Q ss_pred EeeCCCcEEEEEe---------CCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEEC
Q 009715 218 WVPGGDGAFVVGH---------ADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFS 288 (528)
Q Consensus 218 ~~p~g~~~l~tg~---------~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 288 (528)
++||++.++++.+ .+..|.+||..+... ...++.-.++... .......++++
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~-~~~i~~p~~p~~~------------------~~~~~~~~~ls 113 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLP-IADIELPEGPRFL------------------VGTYPWMTSLT 113 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcE-EeEEccCCCchhh------------------ccCccceEEEC
Confidence 9999994444455 588999999987321 1111110000000 01233478999
Q ss_pred CCCCEEEEEe-C-CCcEEEEecCCceEEeeecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC-CeEE-EE---eec
Q 009715 289 TDGTYLATVG-R-DGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMED-RKVV-AW---GEG 361 (528)
Q Consensus 289 pdg~~l~s~~-~-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~-~~~~-~~---~~~ 361 (528)
|||++|++.. . +..|.+.|+.+++.+..+.- .+...-...+.+.. ++. +.||......+.. ++.. .. +.+
T Consensus 114 ~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v-p~~~~vy~t~e~~~-~~~-~~Dg~~~~v~~d~~g~~~~~~~~vf~~ 190 (352)
T TIGR02658 114 PDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV-PDCYHIFPTANDTF-FMH-CRDGSLAKVGYGTKGNPKIKPTEVFHP 190 (352)
T ss_pred CCCCEEEEecCCCCCEEEEEECCCCcEEEEEeC-CCCcEEEEecCCcc-EEE-eecCceEEEEecCCCceEEeeeeeecC
Confidence 9999999876 3 68899999999999887764 22222222222222 222 2344444333322 2211 11 111
Q ss_pred CCCCeEE-EEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCe-----EEEEeecCCC--------CCCCeecC
Q 009715 362 HNSWVSG-VAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDE-----IVVPLRRGPL--------GGSPTFST 427 (528)
Q Consensus 362 h~~~V~~-v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~-----~~~~~~~~~~--------~~~~~~s~ 427 (528)
-..++.. -.|.+ .|| .++....+ |+|.+.|+.... ....+..... ...+++++
T Consensus 191 ~~~~v~~rP~~~~------~dg------~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~ 257 (352)
T TIGR02658 191 EDEYLINHPAYSN------KSG------RLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHR 257 (352)
T ss_pred CccccccCCceEc------CCC------cEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcC
Confidence 0000000 02222 155 34444444 999999965433 2222211100 11255555
Q ss_pred CCCCccCCceeee-e---------cCCCCceeeecCCCCceEEeecCCCCeEEEEEeCCe---EEEE-ECCCeEEEEeCC
Q 009715 428 GSQSAHWDNVCPV-G---------TLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES---VLTV-CREGHIKIWMRP 493 (528)
Q Consensus 428 ~~~~~~~d~~~~~-g---------~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~~s~d~---l~t~-s~Dg~i~iW~~~ 493 (528)
++. .+.+ . .-...+.++|..+.+.+..+.. ...+..|+++||+ |++. ..++.|.+.|..
T Consensus 258 dg~------~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~ 330 (352)
T TIGR02658 258 ARD------RIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAE 330 (352)
T ss_pred CCC------EEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECc
Confidence 542 1111 1 1123578888889888887764 3478999999974 4544 478899999998
Q ss_pred CCcc
Q 009715 494 GVAE 497 (528)
Q Consensus 494 ~~~~ 497 (528)
+.+.
T Consensus 331 t~k~ 334 (352)
T TIGR02658 331 TGKE 334 (352)
T ss_pred CCeE
Confidence 8764
No 280
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.75 E-value=7.7e-08 Score=94.23 Aligned_cols=174 Identities=14% Similarity=0.255 Sum_probs=129.1
Q ss_pred CcccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEE
Q 009715 206 GSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSI 285 (528)
Q Consensus 206 ~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 285 (528)
+.+|+..|..++-..+.+ -|++++.|.+|++|.++.++....+ ......++.|+.+|.++
T Consensus 731 f~GH~~~iRai~AidNEN-SFiSASkDKTVKLWSik~EgD~~~t-------------------saCQfTY~aHkk~i~~i 790 (1034)
T KOG4190|consen 731 FTGHQEKIRAIAAIDNEN-SFISASKDKTVKLWSIKPEGDEIGT-------------------SACQFTYQAHKKPIHDI 790 (1034)
T ss_pred ccCcHHHhHHHHhccccc-ceeeccCCceEEEEEeccccCcccc-------------------ceeeeEhhhccCcccce
Confidence 445999999887766655 7999999999999999865432211 22345678899999999
Q ss_pred EECCCCCEEEEEeCCCcEEEEecCCceEEeeecc---c--CCCeEEEEEcCCCCEEEEE-eCCCcEEEEECCCCeEEEEe
Q 009715 286 AFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKS---Y--YGALLCCAWSMDGKYILTG-GEDDLVQVWSMEDRKVVAWG 359 (528)
Q Consensus 286 ~~spdg~~l~s~~~dg~i~vwd~~~~~~~~~~~~---~--~~~v~~l~~sp~g~~l~sg-~~dg~v~vwd~~~~~~~~~~ 359 (528)
.|-.+-++++++ ||-|++||.--++++..+.. | .+.|.|+. +-+..+++.| +...+|+++|-+.++-+..+
T Consensus 791 gfL~~lr~i~Sc--D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~-nv~~~iliAgcsaeSTVKl~DaRsce~~~E~ 867 (1034)
T KOG4190|consen 791 GFLADLRSIASC--DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLE-NVDRHILIAGCSAESTVKLFDARSCEWTCEL 867 (1034)
T ss_pred eeeeccceeeec--cCcceeecccccchhHhhhcCcccCCCceeEecc-cCcchheeeeccchhhheeeecccccceeeE
Confidence 999998888776 78899999887776653321 2 23344432 2244444444 67889999999988765555
Q ss_pred e-----cCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEEEee
Q 009715 360 E-----GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLR 415 (528)
Q Consensus 360 ~-----~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~ 415 (528)
+ +....+.+++..+ .| +.++.+-..|+|.+-|.++|+.+...+
T Consensus 868 kVcna~~Pna~~R~iaVa~-------~G------N~lAa~LSnGci~~LDaR~G~vINswr 915 (1034)
T KOG4190|consen 868 KVCNAPGPNALTRAIAVAD-------KG------NKLAAALSNGCIAILDARNGKVINSWR 915 (1034)
T ss_pred EeccCCCCchheeEEEecc-------Cc------chhhHHhcCCcEEEEecCCCceeccCC
Confidence 4 3446788999998 88 789999999999999999999887654
No 281
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.75 E-value=4.3e-06 Score=84.87 Aligned_cols=115 Identities=10% Similarity=0.023 Sum_probs=75.4
Q ss_pred CeEEEEECCCCCE-EEEEeC---CCcEEEEecCCceEEeeecccCCCeEEEEEcCCCCEEEEE-eC--CCcEEEEECCCC
Q 009715 281 SINSIAFSTDGTY-LATVGR---DGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTG-GE--DDLVQVWSMEDR 353 (528)
Q Consensus 281 ~v~~l~~spdg~~-l~s~~~---dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~sg-~~--dg~v~vwd~~~~ 353 (528)
.+....|+|||+. ++..+. +..|.++|+.+++...... ..+......|+|||+.|+.. +. +..|.++|+..+
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g 267 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK 267 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 6678999999985 665443 3569999999887655433 45556678899999877643 33 356888898877
Q ss_pred eEEEEeecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEe-CCC--eEEEEEccCCeE
Q 009715 354 KVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVG-QDT--RLLLWDLEMDEI 410 (528)
Q Consensus 354 ~~~~~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s-~D~--~i~lwd~~~~~~ 410 (528)
+.. .+..+........|+| || ..|+-.+ ..+ .|.+.|+.+++.
T Consensus 268 ~~~-~LT~~~~~d~~p~~SP-------DG------~~I~F~Sdr~g~~~Iy~~dl~~g~~ 313 (419)
T PRK04043 268 TLT-QITNYPGIDVNGNFVE-------DD------KRIVFVSDRLGYPNIFMKKLNSGSV 313 (419)
T ss_pred cEE-EcccCCCccCccEECC-------CC------CEEEEEECCCCCceEEEEECCCCCe
Confidence 643 3443443344568999 99 3444433 223 566667766554
No 282
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.71 E-value=7.2e-06 Score=80.98 Aligned_cols=293 Identities=13% Similarity=0.173 Sum_probs=178.0
Q ss_pred CcceeeeCCCccEEEEeCCCcEEEEeCCCCCCC-------------CCCCCeEEEEec----------C-CcEEEEEccc
Q 009715 132 SMTNTNFDGKGTYIIFNVGDAIFISDLNSQDKD-------------AKDGHDLLIGLN----------S-GDVYSVSLRQ 187 (528)
Q Consensus 132 s~~~~~~~~~g~~~~~~~~~~i~v~~~~~~~~~-------------~~~~~~l~~g~~----------~-G~v~iwd~~~ 187 (528)
+-+...+++.|++++.--.+++.+|--..-... +|..++|++-+. + ..+.|||+++
T Consensus 212 Tetyv~wSP~GTYL~t~Hk~GI~lWGG~~f~r~~RF~Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~t 291 (698)
T KOG2314|consen 212 TETYVRWSPKGTYLVTFHKQGIALWGGESFDRIQRFYHPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIAT 291 (698)
T ss_pred eeeeEEecCCceEEEEEeccceeeecCccHHHHHhccCCCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccc
Confidence 345667888888888766777777754432211 889999988542 2 3789999998
Q ss_pred cccccccceeeeeeeccCCcc--cCCce-eEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEecc
Q 009715 188 QLQDVGKKLVGAHHYNKDGSV--NNSRC-TSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHP 264 (528)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~--h~~~v-~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (528)
... .+.+.. ....+ .-..|+.|++ ++|.-.. ..|.||+..+-....
T Consensus 292 G~l------------krsF~~~~~~~~~WP~frWS~DdK-y~Arm~~-~sisIyEtpsf~lld----------------- 340 (698)
T KOG2314|consen 292 GLL------------KRSFPVIKSPYLKWPIFRWSHDDK-YFARMTG-NSISIYETPSFMLLD----------------- 340 (698)
T ss_pred cch------------hcceeccCCCccccceEEeccCCc-eeEEecc-ceEEEEecCceeeec-----------------
Confidence 321 111111 11222 2478999999 7776665 578899876421110
Q ss_pred CCCCCCCeEEEeecCCCeEEEEECCCCCEEEEEeCC-----CcEEEEecCCceEEeeecccCCCeEEEEEcCCCCEEEEE
Q 009715 265 RYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRD-----GYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTG 339 (528)
Q Consensus 265 ~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~~~d-----g~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~sg 339 (528)
..+++ -..|..+.|+|.++.||.=.-. ..+.+..+.+++.++.-.-+.-.-..+-|-.+|.+|+.-
T Consensus 341 ----~Kslk-----i~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvk 411 (698)
T KOG2314|consen 341 ----KKSLK-----ISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVK 411 (698)
T ss_pred ----ccccC-----CccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEE
Confidence 01111 1578899999998888874321 356777777777777655554444557788888888753
Q ss_pred e----------CCCcEEEEECCCCeE-EEEeecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEe---CCCeEEEEEc
Q 009715 340 G----------EDDLVQVWSMEDRKV-VAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVG---QDTRLLLWDL 405 (528)
Q Consensus 340 ~----------~dg~v~vwd~~~~~~-~~~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s---~D~~i~lwd~ 405 (528)
- .-..+.|+.++.... +..+. -...|...+|.| .| ..++.-+ .-.++.+|-+
T Consensus 412 vdR~tK~~~~g~f~n~eIfrireKdIpve~ve-lke~vi~FaWEP-------~g------dkF~vi~g~~~k~tvsfY~~ 477 (698)
T KOG2314|consen 412 VDRHTKSKVKGQFSNLEIFRIREKDIPVEVVE-LKESVIAFAWEP-------HG------DKFAVISGNTVKNTVSFYAV 477 (698)
T ss_pred EEeeccccccceEeeEEEEEeeccCCCceeee-cchheeeeeecc-------CC------CeEEEEEccccccceeEEEe
Confidence 2 122466777776543 33333 667889999999 77 3333332 2345666665
Q ss_pred cCCeEEEEeecCCCCCCCeecCCCCCccCCceeeeecCCCCceeeecCCCCceEEeecCCCCeEEEEEeCCe--EEE---
Q 009715 406 EMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLT--- 480 (528)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~~s~d~--l~t--- 480 (528)
.+... +.+.+..+ .....+.|-|+|.+ ++.
T Consensus 478 e~~~~-------------------------------------------~~~lVk~~--dk~~~N~vfwsPkG~fvvva~l 512 (698)
T KOG2314|consen 478 ETNIK-------------------------------------------KPSLVKEL--DKKFANTVFWSPKGRFVVVAAL 512 (698)
T ss_pred ecCCC-------------------------------------------chhhhhhh--cccccceEEEcCCCcEEEEEEe
Confidence 53100 00111111 12345788999975 333
Q ss_pred EECCCeEEEEeCCCCccccC---CCccce-EEEccCCceEEEeeeec
Q 009715 481 VCREGHIKIWMRPGVAESQS---SSSETV-LSTSSKDKPLLSSKVVT 523 (528)
Q Consensus 481 ~s~Dg~i~iW~~~~~~~~~~---~~~~~v-l~~spd~~~l~s~~~~g 523 (528)
.|..|.+.++|..-...... .|.... +.+.|.|||+++++...
T Consensus 513 ~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~w 559 (698)
T KOG2314|consen 513 VSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSSSW 559 (698)
T ss_pred cccccceEEEecchhhhhhccCccccccccceECCCCCEEEEeeehh
Confidence 34678999999875332222 333333 88999999999886543
No 283
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.67 E-value=4.6e-06 Score=85.39 Aligned_cols=245 Identities=15% Similarity=0.182 Sum_probs=168.1
Q ss_pred cCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEEC
Q 009715 209 NNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFS 288 (528)
Q Consensus 209 h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 288 (528)
|...-.++.|+|.| +||-|+.. .|.+-|..+ .+.+..+..|+..|+.+.|.
T Consensus 14 ~~sN~~A~Dw~~~G--LiAygshs-lV~VVDs~s--------------------------~q~iqsie~h~s~V~~VrWa 64 (1062)
T KOG1912|consen 14 SRSNRNAADWSPSG--LIAYGSHS-LVSVVDSRS--------------------------LQLIQSIELHQSAVTSVRWA 64 (1062)
T ss_pred CcccccccccCccc--eEEEecCc-eEEEEehhh--------------------------hhhhhccccCccceeEEEec
Confidence 44446789999998 57777754 778888764 34566667788999999998
Q ss_pred CCC------------CEEEEEeCCCcEEEEecCCceEEeeecccCCCeEEEEEcC---CC-CEEEEEeCCCcEEEEECCC
Q 009715 289 TDG------------TYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSM---DG-KYILTGGEDDLVQVWSMED 352 (528)
Q Consensus 289 pdg------------~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp---~g-~~l~sg~~dg~v~vwd~~~ 352 (528)
|-. -+||++...|.|.+||+..+..+..+..|..++..++|-+ +. .+|+.-.....|.+|+..+
T Consensus 65 p~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdt 144 (1062)
T KOG1912|consen 65 PAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDT 144 (1062)
T ss_pred cCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccC
Confidence 621 2577888889999999999988888888899999999976 44 3555556678999999999
Q ss_pred CeEEEEeecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccC-Ce---EEE--EeecCCCC------
Q 009715 353 RKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEM-DE---IVV--PLRRGPLG------ 420 (528)
Q Consensus 353 ~~~~~~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~-~~---~~~--~~~~~~~~------ 420 (528)
|+.+...........|+.++|+ |. +.+..-+..|.|.+-+.-. .+ ..+ .+......
T Consensus 145 G~k~Wk~~ys~~iLs~f~~DPf------d~------rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~ler 212 (1062)
T KOG1912|consen 145 GEKFWKYDYSHEILSCFRVDPF------DS------RHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLER 212 (1062)
T ss_pred CceeeccccCCcceeeeeeCCC------Cc------ceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhh
Confidence 9998887766667788999997 65 4555555666766665421 11 111 11111000
Q ss_pred -----CCCeecCCC-----------CCccCCceeeeecCCCCceeeecCCCCceEEeecCCCCeEEEEEeCC----eEEE
Q 009715 421 -----GSPTFSTGS-----------QSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE----SVLT 480 (528)
Q Consensus 421 -----~~~~~s~~~-----------~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~~s~d----~l~t 480 (528)
...+-.+.+ ...+|.+. ..-.+...+.++|++-..++....-..+.+.=+.+-|+ .|++
T Consensus 213 e~at~ns~ts~~~sa~fity~a~faf~p~~rn~-lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~Lfc 291 (1062)
T KOG1912|consen 213 ETATGNSTTSTPASAYFITYCAQFAFSPHWRNI-LFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFC 291 (1062)
T ss_pred hhhccccccCCCcchhHHHHHHhhhcChhhhce-EEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEE
Confidence 000000000 13344443 34445677888888877777777666665556666664 5999
Q ss_pred EECCCeEEEEeCCCC
Q 009715 481 VCREGHIKIWMRPGV 495 (528)
Q Consensus 481 ~s~Dg~i~iW~~~~~ 495 (528)
.-.||.+.+|-....
T Consensus 292 lH~nG~ltirvrk~~ 306 (1062)
T KOG1912|consen 292 LHSNGRLTIRVRKEE 306 (1062)
T ss_pred EecCCeEEEEEeecc
Confidence 999999999987653
No 284
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.66 E-value=3.1e-07 Score=92.70 Aligned_cols=171 Identities=18% Similarity=0.175 Sum_probs=125.2
Q ss_pred cCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEEC
Q 009715 209 NNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFS 288 (528)
Q Consensus 209 h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 288 (528)
......|+.|+.+.. ++++|+.||.++|..+.+........+ . +..+....-+.+.+|.+.|.-+.|+
T Consensus 13 nnvkL~c~~WNke~g-yIAcgG~dGlLKVlKl~t~t~d~~~~g-l----------aa~snLsmNQtLeGH~~sV~vvTWN 80 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESG-YIACGGADGLLKVLKLGTDTTDLNKSG-L----------AAASNLSMNQTLEGHNASVMVVTWN 80 (1189)
T ss_pred CCceEEEEEEcccCC-eEEeccccceeEEEEccccCCcccccc-c----------ccccccchhhhhccCcceEEEEEec
Confidence 556789999999988 999999999999999987432221111 0 1112233445688999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEecCCceEEeeecc--cCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEE-EEeecCCCC
Q 009715 289 TDGTYLATVGRDGYLRVFDYSKEQLICGGKS--YYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVV-AWGEGHNSW 365 (528)
Q Consensus 289 pdg~~l~s~~~dg~i~vwd~~~~~~~~~~~~--~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~~~-~~~~~h~~~ 365 (528)
.+.+.|-+...+|.|.+|-+-.++-...+.. ....|.+++|..||..+....+||.|.|=.++..+.- ..+++ ..
T Consensus 81 e~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg--~~ 158 (1189)
T KOG2041|consen 81 ENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKG--QL 158 (1189)
T ss_pred cccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcch--he
Confidence 9888999999999999999987765433322 3467899999999999999999999987766543221 11221 12
Q ss_pred eEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEcc
Q 009715 366 VSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLE 406 (528)
Q Consensus 366 V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~ 406 (528)
...+.|++ |. ..++.+-..|.+.++|..
T Consensus 159 l~hv~ws~-------D~------~~~Lf~~ange~hlydnq 186 (1189)
T KOG2041|consen 159 LAHVLWSE-------DL------EQALFKKANGETHLYDNQ 186 (1189)
T ss_pred ccceeecc-------cH------HHHHhhhcCCcEEEeccc
Confidence 34678988 77 466667778899999864
No 285
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.66 E-value=5.8e-05 Score=76.69 Aligned_cols=295 Identities=16% Similarity=0.133 Sum_probs=168.7
Q ss_pred eeeCCCccEEEEeCCCcEEEEeCCCCCCC---------------CCCCCeEEEEecCCcEEEEEccccccccccceeeee
Q 009715 136 TNFDGKGTYIIFNVGDAIFISDLNSQDKD---------------AKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAH 200 (528)
Q Consensus 136 ~~~~~~g~~~~~~~~~~i~v~~~~~~~~~---------------~~~~~~l~~g~~~G~v~iwd~~~~~~~~~~~~~~~~ 200 (528)
...+.+|.+.+++..+...+|..+..... ..++..++++..+|.|+.+|..+...
T Consensus 73 y~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~---------- 142 (394)
T PRK11138 73 YAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEV---------- 142 (394)
T ss_pred EEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCC----------
Confidence 33445678888887666666655433210 22466788899999999999876211
Q ss_pred eeccCCcccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCC
Q 009715 201 HYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQG 280 (528)
Q Consensus 201 ~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 280 (528)
.+.... ...+.+--...++ .++++..+|.|..+|..++. ..-.++... +.........
T Consensus 143 ~W~~~~---~~~~~ssP~v~~~--~v~v~~~~g~l~ald~~tG~-~~W~~~~~~----------------~~~~~~~~~s 200 (394)
T PRK11138 143 AWQTKV---AGEALSRPVVSDG--LVLVHTSNGMLQALNESDGA-VKWTVNLDV----------------PSLTLRGESA 200 (394)
T ss_pred cccccC---CCceecCCEEECC--EEEEECCCCEEEEEEccCCC-EeeeecCCC----------------CcccccCCCC
Confidence 111111 0111111111133 57778888999999987632 221111100 0000000011
Q ss_pred CeEEEEECCCCCEEEEEeCCCcEEEEecCCceEEeeecccCC-------CeEEEEEcC--CCCEEEEEeCCCcEEEEECC
Q 009715 281 SINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYG-------ALLCCAWSM--DGKYILTGGEDDLVQVWSME 351 (528)
Q Consensus 281 ~v~~l~~spdg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~-------~v~~l~~sp--~g~~l~sg~~dg~v~vwd~~ 351 (528)
++. .+..++.++.++.+..+|.++|+.+........ ....+.-+| .+..++.++.++.+..+|..
T Consensus 201 P~v------~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~ 274 (394)
T PRK11138 201 PAT------AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLR 274 (394)
T ss_pred CEE------ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECC
Confidence 111 123567777889999999999887655431100 011111223 34567777789999999999
Q ss_pred CCeEEEEeecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEEEeecCC--CCCCCeecCCC
Q 009715 352 DRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGP--LGGSPTFSTGS 429 (528)
Q Consensus 352 ~~~~~~~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~--~~~~~~~s~~~ 429 (528)
+++.+.... .. ....+... ++ .++.++.|+.|..+|..+++.+....... ....+
T Consensus 275 tG~~~W~~~-~~-~~~~~~~~--------~~-------~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp------ 331 (394)
T PRK11138 275 SGQIVWKRE-YG-SVNDFAVD--------GG-------RIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAP------ 331 (394)
T ss_pred CCCEEEeec-CC-CccCcEEE--------CC-------EEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCC------
Confidence 998775543 11 11222222 33 67778889999999999998776543211 11111
Q ss_pred CCccCCceeeeecCCCCceeeecCCCCceEEeecCCCCeE-EEEEeCCeEEEEECCCeEEEEeCC
Q 009715 430 QSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLS-GLIFTQESVLTVCREGHIKIWMRP 493 (528)
Q Consensus 430 ~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~-~l~~s~d~l~t~s~Dg~i~iW~~~ 493 (528)
...+..+.++..++.+...|..+++.+.........+. ...+..+.|+.++.||.|..++++
T Consensus 332 --~v~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~~~~~l~v~t~~G~l~~~~~~ 394 (394)
T PRK11138 332 --VLYNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVVADDKLLIQARDGTVYAITRP 394 (394)
T ss_pred --EEECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEEECCEEEEEeCCceEEEEeCC
Confidence 12345566777788888888888887776654433332 233444578899999999888764
No 286
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.65 E-value=3.2e-05 Score=85.68 Aligned_cols=158 Identities=15% Similarity=0.285 Sum_probs=105.6
Q ss_pred cCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEEC
Q 009715 209 NNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFS 288 (528)
Q Consensus 209 h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 288 (528)
....|.++.|.++.. .++.+..+|.|.+...+.+.. ...+...-.-...|.+++||
T Consensus 74 ~~~~ivs~~yl~d~~-~l~~~~~~Gdi~~~~~~~~~~-----------------------~~~~E~VG~vd~GI~a~~WS 129 (928)
T PF04762_consen 74 PNDKIVSFQYLADSE-SLCIALASGDIILVREDPDPD-----------------------EDEIEIVGSVDSGILAASWS 129 (928)
T ss_pred CCCcEEEEEeccCCC-cEEEEECCceEEEEEccCCCC-----------------------CceeEEEEEEcCcEEEEEEC
Confidence 557899999999998 899999999999994332110 01111111224789999999
Q ss_pred CCCCEEEEEeCCCcEEEEecCC---------------ceEE--------eeecc------------------------cC
Q 009715 289 TDGTYLATVGRDGYLRVFDYSK---------------EQLI--------CGGKS------------------------YY 321 (528)
Q Consensus 289 pdg~~l~s~~~dg~i~vwd~~~---------------~~~~--------~~~~~------------------------~~ 321 (528)
||+..|+..+.+++|.+.+-.- .+.+ .+|.+ +.
T Consensus 130 PD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~d 209 (928)
T PF04762_consen 130 PDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWD 209 (928)
T ss_pred CCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccC
Confidence 9999999999999988875420 0011 11100 22
Q ss_pred CCeEEEEEcCCCCEEEEEeC---C---CcEEEEECCCCeEEEEeecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEe
Q 009715 322 GALLCCAWSMDGKYILTGGE---D---DLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVG 395 (528)
Q Consensus 322 ~~v~~l~~sp~g~~l~sg~~---d---g~v~vwd~~~~~~~~~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s 395 (528)
+.-..|+|-.||.|+|+.+- + ..++||+-+ |+...+-+.-.+--.+++|.| .| ++|++..
T Consensus 210 d~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrP-------sG------~lIA~~q 275 (928)
T PF04762_consen 210 DGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRP-------SG------NLIASSQ 275 (928)
T ss_pred CCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCC-------CC------CEEEEEE
Confidence 24457899999999998764 2 579999955 766555554444456789999 99 6777765
Q ss_pred C---CCeEEEEE
Q 009715 396 Q---DTRLLLWD 404 (528)
Q Consensus 396 ~---D~~i~lwd 404 (528)
. ...|.+|.
T Consensus 276 ~~~~~~~VvFfE 287 (928)
T PF04762_consen 276 RLPDRHDVVFFE 287 (928)
T ss_pred EcCCCcEEEEEe
Confidence 3 23455554
No 287
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.64 E-value=1.9e-05 Score=74.50 Aligned_cols=237 Identities=17% Similarity=0.118 Sum_probs=142.7
Q ss_pred ceeEEEEeeCCCcEEEEEeCCce-EEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCC
Q 009715 212 RCTSVTWVPGGDGAFVVGHADGN-LYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTD 290 (528)
Q Consensus 212 ~v~~l~~~p~g~~~l~tg~~dg~-v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spd 290 (528)
+...++.+|.....++.+-.-|+ ..+||..+.. ....+.. .+-+.|.+| -.|++|
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~-~~~~~~a-----------------~~gRHFyGH------g~fs~d 61 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQ-LLQRLWA-----------------PPGRHFYGH------GVFSPD 61 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCc-eeeEEcC-----------------CCCCEEecC------EEEcCC
Confidence 46678899966657788887775 6789987632 2212211 122333444 589999
Q ss_pred CCEEEEEeC-----CCcEEEEecC-CceEEeeecccCCCeEEEEEcCCCCEEEEEeC------------------CCcEE
Q 009715 291 GTYLATVGR-----DGYLRVFDYS-KEQLICGGKSYYGALLCCAWSMDGKYILTGGE------------------DDLVQ 346 (528)
Q Consensus 291 g~~l~s~~~-----dg~i~vwd~~-~~~~~~~~~~~~~~v~~l~~sp~g~~l~sg~~------------------dg~v~ 346 (528)
|++|++.-. .|.|-|||.. +.+.+..+..|.-.-..+.+.|||+.|+++.. +-.+.
T Consensus 62 G~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~ 141 (305)
T PF07433_consen 62 GRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLV 141 (305)
T ss_pred CCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceE
Confidence 999998743 4789999999 66778888888777888999999988888642 22355
Q ss_pred EEECCCCeEEEE--e--ecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeC-CCeEEEEEccCCeEEEEeecCCCCC
Q 009715 347 VWSMEDRKVVAW--G--EGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQ-DTRLLLWDLEMDEIVVPLRRGPLGG 421 (528)
Q Consensus 347 vwd~~~~~~~~~--~--~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~-D~~i~lwd~~~~~~~~~~~~~~~~~ 421 (528)
..|..+|+.+.. + ..|...|..+++++ +| .++.+.+ .+.- ++ ..-.+..++.
T Consensus 142 ~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~-------~G-------~V~~a~Q~qg~~--~~--~~PLva~~~~----- 198 (305)
T PF07433_consen 142 YLDARSGALLEQVELPPDLHQLSIRHLAVDG-------DG-------TVAFAMQYQGDP--GD--APPLVALHRR----- 198 (305)
T ss_pred EEecCCCceeeeeecCccccccceeeEEecC-------CC-------cEEEEEecCCCC--Cc--cCCeEEEEcC-----
Confidence 567777777665 3 23777888888888 77 3333332 1110 00 0001111111
Q ss_pred CCeecCCCCCccCCceeeeecCCCCceeeecCCCCceEEeecCCCCeEEEEEeCCe--E-EEEECCCeEEEEeCCCCccc
Q 009715 422 SPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--V-LTVCREGHIKIWMRPGVAES 498 (528)
Q Consensus 422 ~~~~s~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~~s~d~--l-~t~s~Dg~i~iW~~~~~~~~ 498 (528)
...+...+.+. .....-.+.|-+|++++++ + +|+=.-+.+.+||..++...
T Consensus 199 ----------------------g~~~~~~~~p~----~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~ 252 (305)
T PF07433_consen 199 ----------------------GGALRLLPAPE----EQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLL 252 (305)
T ss_pred ----------------------CCcceeccCCh----HHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEe
Confidence 00011111110 0011224678899999984 4 44447788999999888755
Q ss_pred cCCCccce--EEEccCCceEEEeeee
Q 009715 499 QSSSSETV--LSTSSKDKPLLSSKVV 522 (528)
Q Consensus 499 ~~~~~~~v--l~~spd~~~l~s~~~~ 522 (528)
....-..+ ++..+++ +++++..+
T Consensus 253 ~~~~l~D~cGva~~~~~-f~~ssG~G 277 (305)
T PF07433_consen 253 GSVPLPDACGVAPTDDG-FLVSSGQG 277 (305)
T ss_pred eccccCceeeeeecCCc-eEEeCCCc
Confidence 54433444 4445555 66665443
No 288
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.63 E-value=6.1e-07 Score=82.23 Aligned_cols=256 Identities=15% Similarity=0.198 Sum_probs=155.7
Q ss_pred cCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCcc----ccccccceeEEeccCCCCCCCeEEEeecCCCeEE
Q 009715 209 NNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSF----PVIKDQTQFSVAHPRYSKSNPIARWHICQGSINS 284 (528)
Q Consensus 209 h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 284 (528)
....|+++.|...|. +|++|...|.|.+|.-......+..| +.+... ...++.+.. ...|..
T Consensus 25 ead~ItaVefd~tg~-YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~E------------FDYLkSlei-eEKin~ 90 (460)
T COG5170 25 EADKITAVEFDETGL-YLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELE------------FDYLKSLEI-EEKINA 90 (460)
T ss_pred ccceeeEEEeccccc-eEeecCCCceEEEeecccccccchhhhhhhcccccc------------hhhhhhccH-HHHhhh
Confidence 556899999999999 99999999999999876533222211 111110 011111111 145788
Q ss_pred EEECCCC--CEEEEEeCCCcEEEEecCCce-------------------------------------EE-----eee-cc
Q 009715 285 IAFSTDG--TYLATVGRDGYLRVFDYSKEQ-------------------------------------LI-----CGG-KS 319 (528)
Q Consensus 285 l~~spdg--~~l~s~~~dg~i~vwd~~~~~-------------------------------------~~-----~~~-~~ 319 (528)
|.|..++ ..++..+.|.+|++|.+.... .+ +.+ ..
T Consensus 91 I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNa 170 (460)
T COG5170 91 IEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANA 170 (460)
T ss_pred eeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceecccc
Confidence 8887654 357777789999999875320 00 001 23
Q ss_pred cCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe---EEEEeecCC-----CCeEEEEEecCCCCCCCCCCccceeEEE
Q 009715 320 YYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRK---VVAWGEGHN-----SWVSGVAFDSYWSQPNSDGTAETVMYRF 391 (528)
Q Consensus 320 ~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~---~~~~~~~h~-----~~V~~v~f~p~~~~~~~dg~~~~~~~~l 391 (528)
|..-++++.++.|.+.++++ .|=.|.+|+++--. .+..++.|. .-|++..|+| .- . .++
T Consensus 171 H~yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp-------~~----c-n~f 237 (460)
T COG5170 171 HPYHINSISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHP-------EM----C-NVF 237 (460)
T ss_pred ceeEeeeeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCH-------hH----c-ceE
Confidence 55668889999998888876 57789999987522 233444554 3578899998 22 1 466
Q ss_pred EEEeCCCeEEEEEccCCeEEEEeecCCCCCCCeecCCCCCccCCceeeeecCCCCceeeecCCCCceEEeecCCCCeEEE
Q 009715 392 GSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGL 471 (528)
Q Consensus 392 ~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l 471 (528)
.-.+..|.|++-|++....-..-.. ......++ ....-+.+-...|.++
T Consensus 238 mYSsSkG~Ikl~DlRq~alcdn~~k-----lfe~~~D~--------------------------v~~~ff~eivsSISD~ 286 (460)
T COG5170 238 MYSSSKGEIKLNDLRQSALCDNSKK-----LFELTIDG--------------------------VDVDFFEEIVSSISDF 286 (460)
T ss_pred EEecCCCcEEehhhhhhhhccCchh-----hhhhccCc--------------------------ccchhHHHHhhhhcce
Confidence 6667789999999985432100000 00000000 0011122334678999
Q ss_pred EEeCCe-EEEEECCCeEEEEeCCCCccccC---------------CCccce-----EEEccCCceEEEeeee
Q 009715 472 IFTQES-VLTVCREGHIKIWMRPGVAESQS---------------SSSETV-----LSTSSKDKPLLSSKVV 522 (528)
Q Consensus 472 ~~s~d~-l~t~s~Dg~i~iW~~~~~~~~~~---------------~~~~~v-----l~~spd~~~l~s~~~~ 522 (528)
.|++++ ++.+-.=-+|+|||+...+.... -..+.| +.||-|.+.+++|+..
T Consensus 287 kFs~ngryIlsRdyltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~ 358 (460)
T COG5170 287 KFSDNGRYILSRDYLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYS 358 (460)
T ss_pred EEcCCCcEEEEeccceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccc
Confidence 999987 44444447899999875542111 122334 7789999999888765
No 289
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.63 E-value=1.1e-05 Score=72.89 Aligned_cols=200 Identities=15% Similarity=0.123 Sum_probs=132.4
Q ss_pred eeeCCCccEEEEeCCC---cEEEEeCCCCCCC-----CCCCCeEEEEecCCcEEEEEccccccccccceeeeeeeccCCc
Q 009715 136 TNFDGKGTYIIFNVGD---AIFISDLNSQDKD-----AKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGS 207 (528)
Q Consensus 136 ~~~~~~g~~~~~~~~~---~i~v~~~~~~~~~-----~~~~~~l~~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 207 (528)
+.....|.+-.|+... .+++.|....+.. .-....+.++..|.++++++++-.. .+.. .
T Consensus 88 a~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s---~~~~---~------- 154 (344)
T KOG4532|consen 88 ADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDS---NKFA---V------- 154 (344)
T ss_pred EeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCc---ccce---e-------
Confidence 3333467777776552 3567766655333 2233456788888888888876521 1111 1
Q ss_pred ccCC--ceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEE
Q 009715 208 VNNS--RCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSI 285 (528)
Q Consensus 208 ~h~~--~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 285 (528)
|.. .+..+++++++. ++++.+....|..|.++.++.-.... .....+..-.+.
T Consensus 155 -h~~~~~~ns~~~snd~~-~~~~Vgds~~Vf~y~id~~sey~~~~-----------------------~~a~t~D~gF~~ 209 (344)
T KOG4532|consen 155 -HNQNLTQNSLHYSNDPS-WGSSVGDSRRVFRYAIDDESEYIENI-----------------------YEAPTSDHGFYN 209 (344)
T ss_pred -eccccceeeeEEcCCCc-eEEEecCCCcceEEEeCCccceeeee-----------------------EecccCCCceee
Confidence 333 378899999999 89999999999999998654321110 001112445678
Q ss_pred EECCCCCEEEEEeCCCcEEEEecCCceEE-----eeecccCCCeEEEEEcCCCC--EEEEEeCCCcEEEEECCCCeEEEE
Q 009715 286 AFSTDGTYLATVGRDGYLRVFDYSKEQLI-----CGGKSYYGALLCCAWSMDGK--YILTGGEDDLVQVWSMEDRKVVAW 358 (528)
Q Consensus 286 ~~spdg~~l~s~~~dg~i~vwd~~~~~~~-----~~~~~~~~~v~~l~~sp~g~--~l~sg~~dg~v~vwd~~~~~~~~~ 358 (528)
.|+.....+|++..||++.|||++..... .+-..|.+.+..+.|++-|. +|+..-.-+.+.+.|+++++..+.
T Consensus 210 S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~ 289 (344)
T KOG4532|consen 210 SFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQV 289 (344)
T ss_pred eeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeE
Confidence 99998899999999999999999854322 12234889999999998664 455555567899999999865444
Q ss_pred ee-------cCCC-CeEEEEEec
Q 009715 359 GE-------GHNS-WVSGVAFDS 373 (528)
Q Consensus 359 ~~-------~h~~-~V~~v~f~p 373 (528)
+. .|.. .|..-.|+.
T Consensus 290 I~i~~d~~~~~~tq~ifgt~f~~ 312 (344)
T KOG4532|consen 290 IVIPDDVERKHNTQHIFGTNFNN 312 (344)
T ss_pred EecCccccccccccccccccccC
Confidence 33 2333 266666765
No 290
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.62 E-value=2.2e-05 Score=79.77 Aligned_cols=173 Identities=17% Similarity=0.129 Sum_probs=106.0
Q ss_pred ceeEEEEeeCCCcEEEE-EeC--CceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEEC
Q 009715 212 RCTSVTWVPGGDGAFVV-GHA--DGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFS 288 (528)
Q Consensus 212 ~v~~l~~~p~g~~~l~t-g~~--dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 288 (528)
.+....|+|+|+.+++. ... +..|+++|+.++.. +.+....+......|+
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~---------------------------~~lt~~~g~~~~~~~S 241 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKK---------------------------EKIASSQGMLVVSDVS 241 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcE---------------------------EEEecCCCcEEeeEEC
Confidence 67789999999843443 332 35688888764211 1111123455678899
Q ss_pred CCCCEEEEEe-C--CCcEEEEecCCceEEeeecccCCCeEEEEEcCCCCEEEEEeC-CC--cEEEEECCCCeEEEEeecC
Q 009715 289 TDGTYLATVG-R--DGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGE-DD--LVQVWSMEDRKVVAWGEGH 362 (528)
Q Consensus 289 pdg~~l~s~~-~--dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~sg~~-dg--~v~vwd~~~~~~~~~~~~h 362 (528)
|||+.|+... . +..|.++|+.+++... +..+........|+|||+.|+..+. .+ .|.+.|+.+++..+... .
T Consensus 242 PDG~~la~~~~~~g~~~Iy~~dl~~g~~~~-LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~-~ 319 (419)
T PRK04043 242 KDGSKLLLTMAPKGQPDIYLYDTNTKTLTQ-ITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVF-H 319 (419)
T ss_pred CCCCEEEEEEccCCCcEEEEEECCCCcEEE-cccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCcc-C
Confidence 9998776543 2 3568888988776443 3333333345689999998776653 23 68888888776543332 1
Q ss_pred CCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCC---------CeEEEEEccCCeEEEEeecCCCCCCCeecCCC
Q 009715 363 NSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQD---------TRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGS 429 (528)
Q Consensus 363 ~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D---------~~i~lwd~~~~~~~~~~~~~~~~~~~~~s~~~ 429 (528)
... ...|+| || ..|+..... ..|.+.|+.++... .+........+.|++++
T Consensus 320 g~~--~~~~SP-------DG------~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~~~~~~p~~SPDG 379 (419)
T PRK04043 320 GKN--NSSVST-------YK------NYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTANGVNQFPRFSSDG 379 (419)
T ss_pred CCc--CceECC-------CC------CEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCCCCcCCeEECCCC
Confidence 112 248999 99 444444332 36888888887653 34333344457777776
No 291
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.62 E-value=3.2e-06 Score=82.63 Aligned_cols=245 Identities=11% Similarity=0.115 Sum_probs=145.3
Q ss_pred cCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEEC
Q 009715 209 NNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFS 288 (528)
Q Consensus 209 h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 288 (528)
..-++..+.|+|.|. +|+.... ..|.+|.-.... ....+ -...|..+.|+
T Consensus 31 ~~~p~~~~~~SP~G~-~l~~~~~-~~V~~~~g~~~~-~l~~~---------------------------~~~~V~~~~fS 80 (561)
T COG5354 31 ENWPVAYVSESPLGT-YLFSEHA-AGVECWGGPSKA-KLVRF---------------------------RHPDVKYLDFS 80 (561)
T ss_pred cCcchhheeecCcch-heehhhc-cceEEccccchh-heeee---------------------------ecCCceecccC
Confidence 345788999999999 7776665 468889865422 11111 12578899999
Q ss_pred CCCCEEEEEeCCC---------------cEEEEecCCceEEeeecccCCC--eE-EEEEcCCCCEEEEEeCCCcEEEEEC
Q 009715 289 TDGTYLATVGRDG---------------YLRVFDYSKEQLICGGKSYYGA--LL-CCAWSMDGKYILTGGEDDLVQVWSM 350 (528)
Q Consensus 289 pdg~~l~s~~~dg---------------~i~vwd~~~~~~~~~~~~~~~~--v~-~l~~sp~g~~l~sg~~dg~v~vwd~ 350 (528)
|.+++|.+=+..+ .+.+||+.++..+..+..-..+ .. -+.|+-+.+|+|=-. ...++|+++
T Consensus 81 P~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv-~~sl~i~e~ 159 (561)
T COG5354 81 PNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVV-GSSLYIHEI 159 (561)
T ss_pred cccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhc-cCeEEEEec
Confidence 9999999855433 4999999999999887764443 33 578898888776442 346899996
Q ss_pred CCCeE----EEEeecCCCCeEEEEEecCCCCCCCCCCccceeEEEE--EEeCCCeEEEEEccCCeEEEEeecC-CCCCCC
Q 009715 351 EDRKV----VAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFG--SVGQDTRLLLWDLEMDEIVVPLRRG-PLGGSP 423 (528)
Q Consensus 351 ~~~~~----~~~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~--s~s~D~~i~lwd~~~~~~~~~~~~~-~~~~~~ 423 (528)
++.. .+.++ ...|....|+| .|+.... -++. ..+.++++++|.+.....+.+-..- .....+
T Consensus 160 -t~n~~~~p~~~lr--~~gi~dFsisP-------~~n~~~l-a~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qL 228 (561)
T COG5354 160 -TDNIEEHPFKNLR--PVGILDFSISP-------EGNHDEL-AYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQL 228 (561)
T ss_pred -CCccccCchhhcc--ccceeeEEecC-------CCCCceE-EEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEE
Confidence 3321 12222 34577888888 5422221 0111 2357889999999876655443221 111222
Q ss_pred eecCCCCCccCCcee-----eeecCCCCceeeecCCCCceEEeecCCCCeEEEEEeCCe----EEEEECCCeEEEEeCCC
Q 009715 424 TFSTGSQSAHWDNVC-----PVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES----VLTVCREGHIKIWMRPG 494 (528)
Q Consensus 424 ~~s~~~~~~~~d~~~-----~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~~s~d~----l~t~s~Dg~i~iW~~~~ 494 (528)
.+...+......... ........+.++++.....-.. ..-.++|.+..|.|+. +++|-.+-.+.++|+++
T Consensus 229 kW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~-~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~ 307 (561)
T COG5354 229 KWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVE-KDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRG 307 (561)
T ss_pred EEecCCceEEEEEEEeeecccceeccceEEEEeeccccccee-ccccccceeeeecccCCceeEEecccccceeeccccc
Confidence 222222100000000 0011123455555553322222 2457899999999853 56666888899998876
Q ss_pred Cc
Q 009715 495 VA 496 (528)
Q Consensus 495 ~~ 496 (528)
..
T Consensus 308 Nl 309 (561)
T COG5354 308 NL 309 (561)
T ss_pred ce
Confidence 64
No 292
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.62 E-value=5.1e-07 Score=80.85 Aligned_cols=209 Identities=15% Similarity=0.145 Sum_probs=127.3
Q ss_pred ceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCCC
Q 009715 212 RCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDG 291 (528)
Q Consensus 212 ~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spdg 291 (528)
.|+.+.+..+- .|+++..++.+..+..-+. ..... ..+....++.+.+..|+++-.+-+.+-.+
T Consensus 38 ~~~~~~~v~~~--~lf~~e~~~~~ss~g~~r~-~~~~~-------------~~rt~~i~~~~~~a~~sep~p~~~~s~~~ 101 (319)
T KOG4714|consen 38 KLSKVSLSAEY--ILFTGETSSQIISLGKGRG-RCISL-------------WERDDGIDPFKVLAKNSEIDPNDACTMTD 101 (319)
T ss_pred EEEEeechhhh--eeecccchhheeeeccceE-EEech-------------hhcccCcCceeeeeccCCCCCcccccccC
Confidence 36677776665 5888888887776665331 00000 01112345566666565554444444457
Q ss_pred CEEEEEeCCCcEEEEecCCceEE-eeecccCCCeEEEEEcCCCCEEEEEe-----CCCcEEEEECCCCeEEEEeecCCCC
Q 009715 292 TYLATVGRDGYLRVFDYSKEQLI-CGGKSYYGALLCCAWSMDGKYILTGG-----EDDLVQVWSMEDRKVVAWGEGHNSW 365 (528)
Q Consensus 292 ~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~~~~v~~l~~sp~g~~l~sg~-----~dg~v~vwd~~~~~~~~~~~~h~~~ 365 (528)
+.+++++.||.+.+++.+.-..+ ..+..-...-.+.+....+.++.++. .-+..+.|+++..+.+..-..-...
T Consensus 102 t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~ 181 (319)
T KOG4714|consen 102 NRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDA 181 (319)
T ss_pred CceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeeccccccccccccccccc
Confidence 78999999999999998751111 11111111111222333455444432 2235667776654332211112234
Q ss_pred eEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEEEeecCCCCCCCeecCCCCCccCCceeeeecCCC
Q 009715 366 VSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQP 445 (528)
Q Consensus 366 V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~d~~~~~g~~~~ 445 (528)
|++++-+| .-. .+++.|+.||.+-+||.+....
T Consensus 182 v~~l~~hp-------~qq-----~~v~cgt~dg~~~l~d~rn~~~----------------------------------- 214 (319)
T KOG4714|consen 182 VTALCSHP-------AQQ-----HLVCCGTDDGIVGLWDARNVAM----------------------------------- 214 (319)
T ss_pred chhhhCCc-------ccc-----cEEEEecCCCeEEEEEcccccc-----------------------------------
Confidence 89999888 321 5788999999999999987521
Q ss_pred CceeeecCCCCceEEeecCCCCeEEEEEeCC---eEEEEECCCeEEEEeCCC
Q 009715 446 APSMRDVPKLSPLVAHRVHTEPLSGLIFTQE---SVLTVCREGHIKIWMRPG 494 (528)
Q Consensus 446 ~~~~~d~~~~~~~~~~~~h~~~V~~l~~s~d---~l~t~s~Dg~i~iW~~~~ 494 (528)
|...+..|+.+|+.+.|+|. .|++++.||.+.-||-.+
T Consensus 215 -----------p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 215 -----------PVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred -----------hHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 22345679999999999995 499999999999999764
No 293
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.61 E-value=1.5e-07 Score=87.43 Aligned_cols=162 Identities=12% Similarity=0.150 Sum_probs=116.7
Q ss_pred EEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCCCCEEE
Q 009715 216 VTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLA 295 (528)
Q Consensus 216 l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~ 295 (528)
++|+-+-..+-++.+.+-.|-+-++.++-. ..| . ..+.|.++.|...++++.
T Consensus 217 CawSlni~gyhfs~G~sqqv~L~nvetg~~--qsf-------------------------~-sksDVfAlQf~~s~nLv~ 268 (425)
T KOG2695|consen 217 CAWSLNIMGYHFSVGLSQQVLLTNVETGHQ--QSF-------------------------Q-SKSDVFALQFAGSDNLVF 268 (425)
T ss_pred hhhhhccceeeecccccceeEEEEeecccc--ccc-------------------------c-cchhHHHHHhcccCCeeE
Confidence 466644332335556666777888775211 011 1 136788899998889999
Q ss_pred EEeCCCcEEEEecCCc-----eEEeeecccCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeE---EEEeecCCCCe
Q 009715 296 TVGRDGYLRVFDYSKE-----QLICGGKSYYGALLCCAWSM-DGKYILTGGEDDLVQVWSMEDRKV---VAWGEGHNSWV 366 (528)
Q Consensus 296 s~~~dg~i~vwd~~~~-----~~~~~~~~~~~~v~~l~~sp-~g~~l~sg~~dg~v~vwd~~~~~~---~~~~~~h~~~V 366 (528)
.|..+|.|..+|++.. .+...+. |...|+++..-. ++++|++.+.+|.|++||++.-++ +.+.+||...-
T Consensus 269 ~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~ 347 (425)
T KOG2695|consen 269 NGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLS 347 (425)
T ss_pred ecccCCcEEEEEeeecccCCCcceEEEE-cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccc
Confidence 9999999999999854 3334443 888899988766 778899999999999999998666 88888886543
Q ss_pred EEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEEEeecC
Q 009715 367 SGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRG 417 (528)
Q Consensus 367 ~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~ 417 (528)
.-+-++- . ..+ ..++++++|...|||.++.+..+.++...
T Consensus 348 a~l~~~v---~-~ee-------g~I~s~GdDcytRiWsl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 348 AYLPAHV---K-EEE-------GSIFSVGDDCYTRIWSLDSGHLLCTIPFP 387 (425)
T ss_pred ccccccc---c-ccc-------ceEEEccCeeEEEEEecccCceeeccCCC
Confidence 3333322 0 013 37888999999999999999998887654
No 294
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.59 E-value=7.9e-07 Score=81.52 Aligned_cols=227 Identities=14% Similarity=0.201 Sum_probs=136.6
Q ss_pred CCCCeEEEEecCCcEEEEEccccccccccceeeeeeeccCCcc------------cCCceeEEEEeeCC-CcEEEEEeCC
Q 009715 166 KDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSV------------NNSRCTSVTWVPGG-DGAFVVGHAD 232 (528)
Q Consensus 166 ~~~~~l~~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~------------h~~~v~~l~~~p~g-~~~l~tg~~d 232 (528)
..|.+|++|...|.|.+|.-.... -+...|..++.. -...|..|.|..++ .+.|+....|
T Consensus 36 ~tg~YlatGDkgGRVvlfer~~s~-------~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstNd 108 (460)
T COG5170 36 ETGLYLATGDKGGRVVLFEREKSY-------GCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTND 108 (460)
T ss_pred cccceEeecCCCceEEEeeccccc-------ccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecCC
Confidence 568899999999999999754311 000111111111 23578899997654 4478888899
Q ss_pred ceEEEEEcCCCCCCCC-------cccc-cc----ccceeEEe----ccCCCCCCCeEEE-eecCCCeEEEEECCCCCEEE
Q 009715 233 GNLYVYEKSKDGAGDS-------SFPV-IK----DQTQFSVA----HPRYSKSNPIARW-HICQGSINSIAFSTDGTYLA 295 (528)
Q Consensus 233 g~v~vwd~~~~~~~~~-------~~~~-~~----~~~~~~~~----~~~~~~~~~~~~~-~~h~~~v~~l~~spdg~~l~ 295 (528)
.+|++|.+........ .+.. .. ........ |...-...|.+.+ ..|.-.|+++.|+.|...++
T Consensus 109 ktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~et~l 188 (460)
T COG5170 109 KTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKETLL 188 (460)
T ss_pred ceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchheee
Confidence 9999999865211000 0000 00 00000000 0000112334444 66888899999999988887
Q ss_pred EEeCCCcEEEEecCCc---eEEeeecccC-----CCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCeE------EE---
Q 009715 296 TVGRDGYLRVFDYSKE---QLICGGKSYY-----GALLCCAWSMDG-KYILTGGEDDLVQVWSMEDRKV------VA--- 357 (528)
Q Consensus 296 s~~~dg~i~vwd~~~~---~~~~~~~~~~-----~~v~~l~~sp~g-~~l~sg~~dg~v~vwd~~~~~~------~~--- 357 (528)
++ .|-.|.+|+++-. -.+..++.|. ..|++..|+|.. ..+.-.+..|.|++-|+++... +.
T Consensus 189 Sa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~ 267 (460)
T COG5170 189 SA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELT 267 (460)
T ss_pred ec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhc
Confidence 76 5678999998632 1233344443 457888899954 3455566789999999985321 11
Q ss_pred -------EeecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCe-EEEEe
Q 009715 358 -------WGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDE-IVVPL 414 (528)
Q Consensus 358 -------~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~-~~~~~ 414 (528)
-+.+-...|..+.|++ +| +++++- .--+|++||+++.+ ++.++
T Consensus 268 ~D~v~~~ff~eivsSISD~kFs~-------ng------ryIlsR-dyltvkiwDvnm~k~pikTi 318 (460)
T COG5170 268 IDGVDVDFFEEIVSSISDFKFSD-------NG------RYILSR-DYLTVKIWDVNMAKNPIKTI 318 (460)
T ss_pred cCcccchhHHHHhhhhcceEEcC-------CC------cEEEEe-ccceEEEEecccccCCceee
Confidence 1122345788999999 88 455554 44689999998754 55555
No 295
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.59 E-value=8.4e-05 Score=68.21 Aligned_cols=184 Identities=12% Similarity=0.131 Sum_probs=105.6
Q ss_pred eEEEEECCCCCEEEEEeCCCcEEEEecCCceEEeeecc-------cCCCeEEEEEcCCC------CEEEEEeCCCcEEEE
Q 009715 282 INSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKS-------YYGALLCCAWSMDG------KYILTGGEDDLVQVW 348 (528)
Q Consensus 282 v~~l~~spdg~~l~s~~~dg~i~vwd~~~~~~~~~~~~-------~~~~v~~l~~sp~g------~~l~sg~~dg~v~vw 348 (528)
=+.++||||+..||.+...|+|++||+...+ +..+.. ....|..+.|-+.. ..|++-..+|.++=|
T Consensus 46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~-lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy 124 (282)
T PF15492_consen 46 WRKLAWSPDCTLLAYAESTGTIRVFDLMGSE-LFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSY 124 (282)
T ss_pred heEEEECCCCcEEEEEcCCCeEEEEecccce-eEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeE
Confidence 3479999999999999999999999998543 333322 12456666664421 135555567777766
Q ss_pred ECCC-----CeEEEEee---cCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEe-CCC----------eEEEEEccCCe
Q 009715 349 SMED-----RKVVAWGE---GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVG-QDT----------RLLLWDLEMDE 409 (528)
Q Consensus 349 d~~~-----~~~~~~~~---~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s-~D~----------~i~lwd~~~~~ 409 (528)
-+.. .+..+.+. .+...|.++.|+| .- ++|+.|| ... -+..|.+-.+.
T Consensus 125 ~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p-------~h------~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~ 191 (282)
T PF15492_consen 125 LVSVGTNQGYQENHSFSFSSHYPHGINSAVYHP-------KH------RLLLVGGCEQNQDGMSKASSCGLTAWRILSDS 191 (282)
T ss_pred EEEcccCCcceeeEEEEecccCCCceeEEEEcC-------CC------CEEEEeccCCCCCccccccccCceEEEEcCCC
Confidence 6522 23333333 2467899999998 43 3444443 332 24455554444
Q ss_pred EEEEeecCCCCCCCeecCCCCCccCCceeeeecCCCCceeeecCCCCceEEeecCCCCeEEEEEeCCe--EEEEECCCeE
Q 009715 410 IVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGHI 487 (528)
Q Consensus 410 ~~~~~~~~~~~~~~~~s~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~~s~d~--l~t~s~Dg~i 487 (528)
+...... +.+.. +........++.+...+.......-...|..|..+||+ |++...+|.|
T Consensus 192 Pyyk~v~---------~~~~~---------~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~l 253 (282)
T PF15492_consen 192 PYYKQVT---------SSEDD---------ITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSL 253 (282)
T ss_pred CcEEEcc---------ccCcc---------ccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeE
Confidence 3322211 00000 00000011122222211111112246789999999996 9999999999
Q ss_pred EEEeCCCCcc
Q 009715 488 KIWMRPGVAE 497 (528)
Q Consensus 488 ~iW~~~~~~~ 497 (528)
.+|++++-..
T Consensus 254 sLW~iPsL~~ 263 (282)
T PF15492_consen 254 SLWEIPSLRL 263 (282)
T ss_pred EEEecCcchh
Confidence 9999998653
No 296
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.58 E-value=0.00017 Score=68.11 Aligned_cols=220 Identities=18% Similarity=0.230 Sum_probs=134.2
Q ss_pred EEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEEC-CCCCE
Q 009715 215 SVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFS-TDGTY 293 (528)
Q Consensus 215 ~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s-pdg~~ 293 (528)
++.|.+....++++--..+.|+.|+..... ...+.. .....+++. +++ .
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~---------------------------~~~~~~--~~~~G~~~~~~~g-~ 53 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGE---------------------------VEVIDL--PGPNGMAFDRPDG-R 53 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTE---------------------------EEEEES--SSEEEEEEECTTS-E
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCe---------------------------EEEEec--CCCceEEEEccCC-E
Confidence 578998444377777788999999987521 111221 237788888 565 5
Q ss_pred EEEEeCCCcEEEEecCCceEEeeecc-----cCCCeEEEEEcCCCCEEEEEeCC--------CcEEEEECCCCeEEEEee
Q 009715 294 LATVGRDGYLRVFDYSKEQLICGGKS-----YYGALLCCAWSMDGKYILTGGED--------DLVQVWSMEDRKVVAWGE 360 (528)
Q Consensus 294 l~s~~~dg~i~vwd~~~~~~~~~~~~-----~~~~v~~l~~sp~g~~l~sg~~d--------g~v~vwd~~~~~~~~~~~ 360 (528)
|+.+..++ +.++|+.+++....... .....+.+++.|+|++.++.... +.|..++.. ++......
T Consensus 54 l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~ 131 (246)
T PF08450_consen 54 LYVADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD 131 (246)
T ss_dssp EEEEETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE
T ss_pred EEEEEcCc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec
Confidence 55555544 56669998865443332 23467889999999977776543 457778877 55444333
Q ss_pred cCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeE-EEEeecCCCCCCCeecCCCCCccCCceee
Q 009715 361 GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEI-VVPLRRGPLGGSPTFSTGSQSAHWDNVCP 439 (528)
Q Consensus 361 ~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~-~~~~~~~~~~~~~~~s~~~~~~~~d~~~~ 439 (528)
.-...+.|+|+| |++ .++++-+..+.|..+|+..... +...+
T Consensus 132 -~~~~pNGi~~s~-------dg~-----~lyv~ds~~~~i~~~~~~~~~~~~~~~~------------------------ 174 (246)
T PF08450_consen 132 -GLGFPNGIAFSP-------DGK-----TLYVADSFNGRIWRFDLDADGGELSNRR------------------------ 174 (246)
T ss_dssp -EESSEEEEEEET-------TSS-----EEEEEETTTTEEEEEEEETTTCCEEEEE------------------------
T ss_pred -CcccccceEECC-------cch-----heeecccccceeEEEeccccccceeeee------------------------
Confidence 456688999999 883 3556778888999999864332 11100
Q ss_pred eecCCCCceeeecCCCCceEEeecCCCCeEEEEEeCCe-EEEE-ECCCeEEEEeCCCCcccc--CC-CccceEEE-ccCC
Q 009715 440 VGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES-VLTV-CREGHIKIWMRPGVAESQ--SS-SSETVLST-SSKD 513 (528)
Q Consensus 440 ~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~~s~d~-l~t~-s~Dg~i~iW~~~~~~~~~--~~-~~~~vl~~-spd~ 513 (528)
.+..+..-.+..-.+++..++ |..+ -..+.|.+++..+..... .. ....-++| .+|.
T Consensus 175 -----------------~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~G~~~~~i~~p~~~~t~~~fgg~~~ 237 (246)
T PF08450_consen 175 -----------------VFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPDGKLLREIELPVPRPTNCAFGGPDG 237 (246)
T ss_dssp -----------------EEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETTSCEEEEEE-SSSSEEEEEEESTTS
T ss_pred -----------------eEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCCccEEEEEcCCCCCEEEEEEECCCC
Confidence 000111111236678888875 4444 467889999988554222 22 22233888 5788
Q ss_pred ceEEEee
Q 009715 514 KPLLSSK 520 (528)
Q Consensus 514 ~~l~s~~ 520 (528)
+.|...+
T Consensus 238 ~~L~vTt 244 (246)
T PF08450_consen 238 KTLYVTT 244 (246)
T ss_dssp SEEEEEE
T ss_pred CEEEEEe
Confidence 8887654
No 297
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.58 E-value=2.7e-06 Score=88.50 Aligned_cols=183 Identities=16% Similarity=0.261 Sum_probs=133.1
Q ss_pred CCCCCeEEEEecCCcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCC
Q 009715 165 AKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDG 244 (528)
Q Consensus 165 ~~~~~~l~~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~ 244 (528)
.-++..++.|+-...+..+|+++.... +......+.|+-|.. +++ +|.+|...|+|.+-|.++
T Consensus 144 ~~~~~~~i~Gg~Q~~li~~Dl~~~~e~------------r~~~v~a~~v~imR~--Nnr-~lf~G~t~G~V~LrD~~s-- 206 (1118)
T KOG1275|consen 144 HMGPSTLIMGGLQEKLIHIDLNTEKET------------RTTNVSASGVTIMRY--NNR-NLFCGDTRGTVFLRDPNS-- 206 (1118)
T ss_pred ccCCcceeecchhhheeeeecccceee------------eeeeccCCceEEEEe--cCc-EEEeecccceEEeecCCc--
Confidence 557778888888888888998872211 000012223444443 556 899999999999999875
Q ss_pred CCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCCCCEEEEEeC---------CCcEEEEecCCceEEe
Q 009715 245 AGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGR---------DGYLRVFDYSKEQLIC 315 (528)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~~~---------dg~i~vwd~~~~~~~~ 315 (528)
.+.++.+..|++.|.+++. .|+.|++|+. |..|+|||++..+.+.
T Consensus 207 ------------------------~~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~ 260 (1118)
T KOG1275|consen 207 ------------------------FETIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALS 260 (1118)
T ss_pred ------------------------Cceeeeeeccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccC
Confidence 5788999999999998766 5889999864 5678999999877766
Q ss_pred eecccCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCC---C-eEEEEeecCCCCeEEEEEecCCCCCCCCCCccceeEE
Q 009715 316 GGKSYYGALLCCAWSMD-GKYILTGGEDDLVQVWSMED---R-KVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYR 390 (528)
Q Consensus 316 ~~~~~~~~v~~l~~sp~-g~~l~sg~~dg~v~vwd~~~---~-~~~~~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~ 390 (528)
-+.-+.++ .-+.|+|. ...+++++..|...+-|..+ . .-+..+....+.+..+++++ +| ..
T Consensus 261 PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSs-------n~------~a 326 (1118)
T KOG1275|consen 261 PIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISS-------NG------DA 326 (1118)
T ss_pred CcccccCc-hhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecC-------CC------ce
Confidence 55544443 45778883 44688888899999999432 2 12233334556699999998 88 68
Q ss_pred EEEEeCCCeEEEEE
Q 009715 391 FGSVGQDTRLLLWD 404 (528)
Q Consensus 391 l~s~s~D~~i~lwd 404 (528)
|+.+..+|.|.+|-
T Consensus 327 lafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 327 LAFGDHEGHVNLWA 340 (1118)
T ss_pred EEEecccCcEeeec
Confidence 99999999999997
No 298
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.58 E-value=4.5e-05 Score=69.96 Aligned_cols=171 Identities=15% Similarity=0.233 Sum_probs=110.9
Q ss_pred ceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCC-
Q 009715 212 RCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTD- 290 (528)
Q Consensus 212 ~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spd- 290 (528)
.=..++|+||+. +||.+...|+|++||+.. .....+++... + .. .-..+|..+.|.+-
T Consensus 45 QWRkl~WSpD~t-lLa~a~S~G~i~vfdl~g--~~lf~I~p~~~---~--------~~-------d~~~Aiagl~Fl~~~ 103 (282)
T PF15492_consen 45 QWRKLAWSPDCT-LLAYAESTGTIRVFDLMG--SELFVIPPAMS---F--------PG-------DLSDAIAGLIFLEYK 103 (282)
T ss_pred hheEEEECCCCc-EEEEEcCCCeEEEEeccc--ceeEEcCcccc---c--------CC-------ccccceeeeEeeccc
Confidence 456799999999 999999999999999873 22222221110 0 00 01356677777542
Q ss_pred -----CCEEEEEeCCCcEEEEecCCc-----eEEee--ecc-cCCCeEEEEEcCCCCEEEEEeCC-C----------cEE
Q 009715 291 -----GTYLATVGRDGYLRVFDYSKE-----QLICG--GKS-YYGALLCCAWSMDGKYILTGGED-D----------LVQ 346 (528)
Q Consensus 291 -----g~~l~s~~~dg~i~vwd~~~~-----~~~~~--~~~-~~~~v~~l~~sp~g~~l~sg~~d-g----------~v~ 346 (528)
...|++-..+|.++-|-+..+ +.... +.. +...|.++.++|..++|++|+.. . -+.
T Consensus 104 ~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLt 183 (282)
T PF15492_consen 104 KSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLT 183 (282)
T ss_pred cccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCce
Confidence 235677778888887775322 22222 222 46789999999998888877541 1 245
Q ss_pred EEECCCCeEEE-----------------------E-----ee-cCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCC
Q 009715 347 VWSMEDRKVVA-----------------------W-----GE-GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQD 397 (528)
Q Consensus 347 vwd~~~~~~~~-----------------------~-----~~-~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D 397 (528)
-|.+-++.+.. . .+ ...+.|..|..+| || .+|++...+
T Consensus 184 aWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSP-------dg------~~La~ih~s 250 (282)
T PF15492_consen 184 AWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSP-------DG------SLLACIHFS 250 (282)
T ss_pred EEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECC-------CC------CEEEEEEcC
Confidence 56543221100 0 01 1356788999999 99 799999999
Q ss_pred CeEEEEEccCCeEEEEeec
Q 009715 398 TRLLLWDLEMDEIVVPLRR 416 (528)
Q Consensus 398 ~~i~lwd~~~~~~~~~~~~ 416 (528)
|.|.+|++..-+.......
T Consensus 251 G~lsLW~iPsL~~~~~W~~ 269 (282)
T PF15492_consen 251 GSLSLWEIPSLRLQRSWKQ 269 (282)
T ss_pred CeEEEEecCcchhhcccch
Confidence 9999999988777665544
No 299
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.55 E-value=4e-07 Score=84.65 Aligned_cols=142 Identities=15% Similarity=0.230 Sum_probs=105.5
Q ss_pred cCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEEC
Q 009715 209 NNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFS 288 (528)
Q Consensus 209 h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 288 (528)
.++.|.++.|...++ ++..|+.+|.|..+|++..... +..+... -.|..+|+++..-
T Consensus 251 sksDVfAlQf~~s~n-Lv~~GcRngeI~~iDLR~rnqG---------------------~~~~a~r-lyh~Ssvtslq~L 307 (425)
T KOG2695|consen 251 SKSDVFALQFAGSDN-LVFNGCRNGEIFVIDLRCRNQG---------------------NGWCAQR-LYHDSSVTSLQIL 307 (425)
T ss_pred cchhHHHHHhcccCC-eeEecccCCcEEEEEeeecccC---------------------CCcceEE-EEcCcchhhhhhh
Confidence 556799999998888 9999999999999999863110 1112222 2367889998887
Q ss_pred C-CCCEEEEEeCCCcEEEEecCCceE---EeeecccCCCe--EEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeec-
Q 009715 289 T-DGTYLATVGRDGYLRVFDYSKEQL---ICGGKSYYGAL--LCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEG- 361 (528)
Q Consensus 289 p-dg~~l~s~~~dg~i~vwd~~~~~~---~~~~~~~~~~v--~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~~~~~~~~- 361 (528)
. ++.+|++.+.+|.|++||++.-++ +.++.+|...- .-+-..+....+++++.|-..+||.++.+..+.++.-
T Consensus 308 q~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 308 QFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFP 387 (425)
T ss_pred ccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCC
Confidence 7 788999999999999999987666 77788775422 2233455666888899999999999999998888763
Q ss_pred ---CCCCeEEEEEec
Q 009715 362 ---HNSWVSGVAFDS 373 (528)
Q Consensus 362 ---h~~~V~~v~f~p 373 (528)
.+..+.+++|+.
T Consensus 388 ~s~~e~d~~sv~~~s 402 (425)
T KOG2695|consen 388 YSASEVDIPSVAFDS 402 (425)
T ss_pred Cccccccccceehhc
Confidence 223455666654
No 300
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.52 E-value=3.6e-07 Score=58.85 Aligned_cols=39 Identities=23% Similarity=0.541 Sum_probs=36.8
Q ss_pred ceEEeeecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 009715 311 EQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWS 349 (528)
Q Consensus 311 ~~~~~~~~~~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd 349 (528)
++++..+.+|.+.|.+|+|+|++.+|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467888999999999999999999999999999999997
No 301
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.52 E-value=5.6e-07 Score=91.29 Aligned_cols=201 Identities=16% Similarity=0.268 Sum_probs=140.1
Q ss_pred cCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEEC
Q 009715 209 NNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFS 288 (528)
Q Consensus 209 h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 288 (528)
-.+.+.++..+|.|+ -+|.++.-| +.+.|+........ ..-+...-.|-.+.|+
T Consensus 23 v~~~~~a~si~p~gr-di~lAsr~g-l~i~dld~p~~ppr------------------------~l~h~tpw~vad~qws 76 (1081)
T KOG0309|consen 23 VDGGFNAVSINPSGR-DIVLASRQG-LYIIDLDDPFTPPR------------------------WLHHITPWQVADVQWS 76 (1081)
T ss_pred ecCcccceeeccccc-hhhhhhhcC-eEEEeccCCCCCce------------------------eeeccCcchhcceecc
Confidence 345788899999998 677777654 55667765322110 0111111345567787
Q ss_pred CCC--CEEEEEeCCCcEEEEecCCc---eEEeeecccCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCC-eEEEEeec
Q 009715 289 TDG--TYLATVGRDGYLRVFDYSKE---QLICGGKSYYGALLCCAWSMDG-KYILTGGEDDLVQVWSMEDR-KVVAWGEG 361 (528)
Q Consensus 289 pdg--~~l~s~~~dg~i~vwd~~~~---~~~~~~~~~~~~v~~l~~sp~g-~~l~sg~~dg~v~vwd~~~~-~~~~~~~~ 361 (528)
|.. .+-++......-.+|++... ..-..+.+|...|+.+.|+|+. ..+++++-|-.+..||+++. .++..+..
T Consensus 77 ~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~ 156 (1081)
T KOG0309|consen 77 PHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSS 156 (1081)
T ss_pred cCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeec
Confidence 742 34444445556778988632 2334567899999999999965 47889999999999999985 45666555
Q ss_pred CCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEEEeecCCCCCCCeecCCCCCccCCceeeee
Q 009715 362 HNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVG 441 (528)
Q Consensus 362 h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~d~~~~~g 441 (528)
-...-..|+|+.. |+ .+.+.+....|++||++.+..
T Consensus 157 w~s~asqVkwnyk------~p-------~vlasshg~~i~vwd~r~gs~------------------------------- 192 (1081)
T KOG0309|consen 157 WRSAASQVKWNYK------DP-------NVLASSHGNDIFVWDLRKGST------------------------------- 192 (1081)
T ss_pred ccccCceeeeccc------Cc-------chhhhccCCceEEEeccCCCc-------------------------------
Confidence 5556778999762 44 455667778899999987642
Q ss_pred cCCCCceeeecCCCCceEEeecCCCCeEEEEEeCC---eEEEEECCCeEEEEeCCC
Q 009715 442 TLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE---SVLTVCREGHIKIWMRPG 494 (528)
Q Consensus 442 ~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~~s~d---~l~t~s~Dg~i~iW~~~~ 494 (528)
|+..+++|...|+.++|..- .+++++.|++|++||...
T Consensus 193 ---------------pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~k 233 (1081)
T KOG0309|consen 193 ---------------PLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSK 233 (1081)
T ss_pred ---------------ceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccc
Confidence 44456678889999999873 399999999999999764
No 302
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.50 E-value=0.00024 Score=66.54 Aligned_cols=216 Identities=19% Similarity=0.209 Sum_probs=126.1
Q ss_pred CccEEEEeCCCcEEEEeCCCCC-CC------CCCCCeEEEEecCCcEEEEEccccccccccceeeeeeeccCCcccCCce
Q 009715 141 KGTYIIFNVGDAIFISDLNSQD-KD------AKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRC 213 (528)
Q Consensus 141 ~g~~~~~~~~~~i~v~~~~~~~-~~------~~~~~~l~~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 213 (528)
+|.+.++|....-.+|...... .. ..++..++++..++.|+.||..+.. .. ..+.........
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~-----~~---W~~~~~~~~~~~-- 71 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGK-----VL---WRFDLPGPISGA-- 71 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSE-----EE---EEEECSSCGGSG--
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCC-----EE---EEeeccccccce--
Confidence 5778888876766666665422 11 3478888899999999999986621 11 111111111111
Q ss_pred eEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCc-cccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCCCC
Q 009715 214 TSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSS-FPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGT 292 (528)
Q Consensus 214 ~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spdg~ 292 (528)
... .+. .++++..++.|+.+|..++. .... .....+. ......+....++.
T Consensus 72 ---~~~-~~~-~v~v~~~~~~l~~~d~~tG~-~~W~~~~~~~~~----------------------~~~~~~~~~~~~~~ 123 (238)
T PF13360_consen 72 ---PVV-DGG-RVYVGTSDGSLYALDAKTGK-VLWSIYLTSSPP----------------------AGVRSSSSPAVDGD 123 (238)
T ss_dssp ---EEE-ETT-EEEEEETTSEEEEEETTTSC-EEEEEEE-SSCT----------------------CSTB--SEEEEETT
T ss_pred ---eee-ccc-ccccccceeeeEecccCCcc-eeeeeccccccc----------------------cccccccCceEecC
Confidence 222 333 57777788899999976532 1111 0000000 00111122222377
Q ss_pred EEEEEeCCCcEEEEecCCceEEeeecccCCC----------e-EEEEEcCCCCEEEEEeCCCc-EEEEECCCCeEEEEee
Q 009715 293 YLATVGRDGYLRVFDYSKEQLICGGKSYYGA----------L-LCCAWSMDGKYILTGGEDDL-VQVWSMEDRKVVAWGE 360 (528)
Q Consensus 293 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~----------v-~~l~~sp~g~~l~sg~~dg~-v~vwd~~~~~~~~~~~ 360 (528)
.++.+..++.|..+|+++|+.+......... + ..+.+. ++ .+..+..++. +.+ |+.+++.+....
T Consensus 124 ~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~v~~~~~~g~~~~~-d~~tg~~~w~~~ 200 (238)
T PF13360_consen 124 RLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVIS-DG-RVYVSSGDGRVVAV-DLATGEKLWSKP 200 (238)
T ss_dssp EEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECC-TT-EEEEECCTSSEEEE-ETTTTEEEEEEC
T ss_pred EEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEE-CC-EEEEEcCCCeEEEE-ECCCCCEEEEec
Confidence 8888888999999999999998776553322 1 222222 44 6777777775 555 999998764322
Q ss_pred cCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEEE
Q 009715 361 GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVP 413 (528)
Q Consensus 361 ~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~ 413 (528)
...+..+ ... ++ ..|+.++.++.|..||+++++.+..
T Consensus 201 --~~~~~~~-~~~-------~~------~~l~~~~~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 201 --ISGIYSL-PSV-------DG------GTLYVTSSDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp --SS-ECEC-EEC-------CC------TEEEEEETTTEEEEEETTTTEEEEE
T ss_pred --CCCccCC-cee-------eC------CEEEEEeCCCEEEEEECCCCCEEeE
Confidence 2333331 222 33 2566666999999999999998753
No 303
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.48 E-value=3.5e-05 Score=76.23 Aligned_cols=265 Identities=13% Similarity=0.128 Sum_probs=148.2
Q ss_pred eeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCCCC
Q 009715 213 CTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGT 292 (528)
Q Consensus 213 v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spdg~ 292 (528)
=+-+.|+|-|. +|++-...| |.+|--..-+ .++++. ...|.-+.|||+.+
T Consensus 213 etyv~wSP~GT-YL~t~Hk~G-I~lWGG~~f~--------------------------r~~RF~--Hp~Vq~idfSP~Ek 262 (698)
T KOG2314|consen 213 ETYVRWSPKGT-YLVTFHKQG-IALWGGESFD--------------------------RIQRFY--HPGVQFIDFSPNEK 262 (698)
T ss_pred eeeEEecCCce-EEEEEeccc-eeeecCccHH--------------------------HHHhcc--CCCceeeecCCccc
Confidence 45689999999 899888765 6688643211 111110 14678899999999
Q ss_pred EEEEEeC-----------CCcEEEEecCCceEEeeecccCC--Ce-EEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEE
Q 009715 293 YLATVGR-----------DGYLRVFDYSKEQLICGGKSYYG--AL-LCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAW 358 (528)
Q Consensus 293 ~l~s~~~-----------dg~i~vwd~~~~~~~~~~~~~~~--~v-~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~~~~~ 358 (528)
||++-+. ...|+|||+.+|.....+....+ .+ .-+.||.|++|+|--.. ..|.||+..+..++..
T Consensus 263 YLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~ 341 (698)
T KOG2314|consen 263 YLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDK 341 (698)
T ss_pred eEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecc
Confidence 9998542 24799999999998877765222 11 23689999999987655 5789999877544322
Q ss_pred eecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeC-----CCeEEEEEccCCeEEEEeecCC-CCCCCeecCCCCCc
Q 009715 359 GEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQ-----DTRLLLWDLEMDEIVVPLRRGP-LGGSPTFSTGSQSA 432 (528)
Q Consensus 359 ~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~-----D~~i~lwd~~~~~~~~~~~~~~-~~~~~~~s~~~~~~ 432 (528)
-.---..|....|+| .+ .+|+--.. -.++.|-.+.+++.++...... ....+-+-..|...
T Consensus 342 Kslki~gIr~FswsP-------~~------~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyL 408 (698)
T KOG2314|consen 342 KSLKISGIRDFSWSP-------TS------NLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYL 408 (698)
T ss_pred cccCCccccCcccCC-------Cc------ceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEE
Confidence 222345677888988 54 34433321 1234455555544443322110 01111111111100
Q ss_pred c--CCcee--eeecCCCCceeeecCCCC-ceEEeecCCCCeEEEEEeCCe--E--EEEE-CCCeEEEEeCCCCc--cccC
Q 009715 433 H--WDNVC--PVGTLQPAPSMRDVPKLS-PLVAHRVHTEPLSGLIFTQES--V--LTVC-REGHIKIWMRPGVA--ESQS 500 (528)
Q Consensus 433 ~--~d~~~--~~g~~~~~~~~~d~~~~~-~~~~~~~h~~~V~~l~~s~d~--l--~t~s-~Dg~i~iW~~~~~~--~~~~ 500 (528)
. -+..- .+.+.-..+.++.++... |+.... -.+.|...+|-|.+ + ++|- .-.++.++.+.... ....
T Consensus 409 cvkvdR~tK~~~~g~f~n~eIfrireKdIpve~ve-lke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lV 487 (698)
T KOG2314|consen 409 CVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVE-LKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLV 487 (698)
T ss_pred EEEEEeeccccccceEeeEEEEEeeccCCCceeee-cchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhh
Confidence 0 00000 011222233344443322 333332 35778899999964 3 3332 23579999887422 1111
Q ss_pred ----CCccceEEEccCCceEEEeeee
Q 009715 501 ----SSSETVLSTSSKDKPLLSSKVV 522 (528)
Q Consensus 501 ----~~~~~vl~~spd~~~l~s~~~~ 522 (528)
......+.++|.|++++.+...
T Consensus 488 k~~dk~~~N~vfwsPkG~fvvva~l~ 513 (698)
T KOG2314|consen 488 KELDKKFANTVFWSPKGRFVVVAALV 513 (698)
T ss_pred hhhcccccceEEEcCCCcEEEEEEec
Confidence 1222338899999999988655
No 304
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.47 E-value=0.00022 Score=72.45 Aligned_cols=252 Identities=15% Similarity=0.058 Sum_probs=143.1
Q ss_pred EEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEE-EEECCCCCEEEEEeCCCcE
Q 009715 225 AFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINS-IAFSTDGTYLATVGRDGYL 303 (528)
Q Consensus 225 ~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-l~~spdg~~l~s~~~dg~i 303 (528)
.++.++.+|.++.+|..++. ..-..... +.+.+ ... .+..++.+..++.|
T Consensus 122 ~v~v~~~~g~l~ald~~tG~-~~W~~~~~--------------------------~~~~ssP~v--~~~~v~v~~~~g~l 172 (394)
T PRK11138 122 KVYIGSEKGQVYALNAEDGE-VAWQTKVA--------------------------GEALSRPVV--SDGLVLVHTSNGML 172 (394)
T ss_pred EEEEEcCCCEEEEEECCCCC-CcccccCC--------------------------CceecCCEE--ECCEEEEECCCCEE
Confidence 57788889999999987632 22222110 11111 011 24467778888999
Q ss_pred EEEecCCceEEeeecccCCCeEEE--EEcC--CCCEEEEEeCCCcEEEEECCCCeEEEEeecCCC----C---eEEEEEe
Q 009715 304 RVFDYSKEQLICGGKSYYGALLCC--AWSM--DGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNS----W---VSGVAFD 372 (528)
Q Consensus 304 ~vwd~~~~~~~~~~~~~~~~v~~l--~~sp--~g~~l~sg~~dg~v~vwd~~~~~~~~~~~~h~~----~---V~~v~f~ 372 (528)
..+|.++|+.+..+.... +...+ .-+| .+..++.+..++.+..+|.++++.+........ . ...+.-+
T Consensus 173 ~ald~~tG~~~W~~~~~~-~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~s 251 (394)
T PRK11138 173 QALNESDGAVKWTVNLDV-PSLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTT 251 (394)
T ss_pred EEEEccCCCEeeeecCCC-CcccccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCC
Confidence 999999999887765321 11000 0122 233567777899999999999887655431100 0 0001111
Q ss_pred cCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEEEeecCCCCCCCeecCCCCCccCCceeeeecCCCCceeeec
Q 009715 373 SYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDV 452 (528)
Q Consensus 373 p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~d~~~~~g~~~~~~~~~d~ 452 (528)
|. -.++ .++.++.++.+..+|+.+++.+........ ..+ ...+..+.+...++.+...|.
T Consensus 252 P~----v~~~-------~vy~~~~~g~l~ald~~tG~~~W~~~~~~~-~~~--------~~~~~~vy~~~~~g~l~ald~ 311 (394)
T PRK11138 252 PV----VVGG-------VVYALAYNGNLVALDLRSGQIVWKREYGSV-NDF--------AVDGGRIYLVDQNDRVYALDT 311 (394)
T ss_pred cE----EECC-------EEEEEEcCCeEEEEECCCCCEEEeecCCCc-cCc--------EEECCEEEEEcCCCeEEEEEC
Confidence 10 0044 566677899999999999988776543211 111 112344555666777777777
Q ss_pred CCCCceEEeec-CCCCeEEEEEeCCeEEEEECCCeEEEEeCCCCccccCCC--ccceEE-EccCCceEEEeeeecccc
Q 009715 453 PKLSPLVAHRV-HTEPLSGLIFTQESVLTVCREGHIKIWMRPGVAESQSSS--SETVLS-TSSKDKPLLSSKVVTSSY 526 (528)
Q Consensus 453 ~~~~~~~~~~~-h~~~V~~l~~s~d~l~t~s~Dg~i~iW~~~~~~~~~~~~--~~~vl~-~spd~~~l~s~~~~gs~~ 526 (528)
.+++.+-.... -.....+.....+.|+.++.||.|.+.|..+++...... ...+.+ ....+..|+.++.+|.+|
T Consensus 312 ~tG~~~W~~~~~~~~~~~sp~v~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~~~~~l~v~t~~G~l~ 389 (394)
T PRK11138 312 RGGVELWSQSDLLHRLLTAPVLYNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVVADDKLLIQARDGTVY 389 (394)
T ss_pred CCCcEEEcccccCCCcccCCEEECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEEECCEEEEEeCCceEE
Confidence 76655433221 111223333445678999999999999998876443221 122211 111345677777777665
No 305
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.46 E-value=2.3e-07 Score=90.97 Aligned_cols=204 Identities=12% Similarity=0.101 Sum_probs=140.4
Q ss_pred eEEEeecCCCeEEEEECCCCCEEEEEeCCCcEEEEecCCc-------eEEeeecccCCCeEEEEEcCCCCEEEEEeCCCc
Q 009715 272 IARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKE-------QLICGGKSYYGALLCCAWSMDGKYILTGGEDDL 344 (528)
Q Consensus 272 ~~~~~~h~~~v~~l~~spdg~~l~s~~~dg~i~vwd~~~~-------~~~~~~~~~~~~v~~l~~sp~g~~l~sg~~dg~ 344 (528)
+..+.+|+..|+.++--.+.+-+++++.|++|++|.++.. .+..++..|..+|..+.|-.+-++++++ |+.
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~g 805 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGG 805 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCc
Confidence 4457789999999887778888999999999999998632 3566788899999999999998888876 789
Q ss_pred EEEEECCCCeEEEEeec--CCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEEEeecCCC---
Q 009715 345 VQVWSMEDRKVVAWGEG--HNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPL--- 419 (528)
Q Consensus 345 v~vwd~~~~~~~~~~~~--h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~--- 419 (528)
|.+||.--++++..+.. ..+.+..+..-| +-|.. -+++-++...+|+++|.+..+-...++.+..
T Consensus 806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl~-----nv~~~-----iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~P 875 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLE-----NVDRH-----ILIAGCSAESTVKLFDARSCEWTCELKVCNAPGP 875 (1034)
T ss_pred ceeecccccchhHhhhcCcccCCCceeEecc-----cCcch-----heeeeccchhhheeeecccccceeeEEeccCCCC
Confidence 99999877777654431 223344444433 00220 2344447889999999999887777765421
Q ss_pred ---CCCCeecCCCCCccCCceeeeecCCCCceeeecCCCCceEEeecCCCCeEEEEEeCC-eEEEEECCCeEEE-EeCC
Q 009715 420 ---GGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE-SVLTVCREGHIKI-WMRP 493 (528)
Q Consensus 420 ---~~~~~~s~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~~s~d-~l~t~s~Dg~i~i-W~~~ 493 (528)
..+++..+.| +.++.+-..+++.+.|.++++.+..++.-+..+..++--.| .|+....|.++-+ |..-
T Consensus 876 na~~R~iaVa~~G------N~lAa~LSnGci~~LDaR~G~vINswrpmecdllqlaapsdq~L~~saldHslaVnWhal 948 (1034)
T KOG4190|consen 876 NALTRAIAVADKG------NKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLAAPSDQALAQSALDHSLAVNWHAL 948 (1034)
T ss_pred chheeEEEeccCc------chhhHHhcCCcEEEEecCCCceeccCCcccchhhhhcCchhHHHHhhcccceeEeeehhc
Confidence 1223333333 23344555677788888888777766654444555544344 3777788888888 8743
No 306
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.46 E-value=5.6e-07 Score=57.96 Aligned_cols=39 Identities=31% Similarity=0.487 Sum_probs=36.3
Q ss_pred CeEEEEeecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEE
Q 009715 353 RKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWD 404 (528)
Q Consensus 353 ~~~~~~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd 404 (528)
++++.++++|...|++|+|+| ++ .+|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~-------~~------~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSP-------DG------NFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEET-------TS------SEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEec-------cc------ccceeeCCCCEEEEEC
Confidence 467899999999999999999 87 6999999999999998
No 307
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.46 E-value=4.4e-05 Score=71.61 Aligned_cols=192 Identities=14% Similarity=0.079 Sum_probs=117.9
Q ss_pred CCCEEEEEeCCCcEEEEecCCceEEeeecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEe-ecCCC---C
Q 009715 290 DGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWG-EGHNS---W 365 (528)
Q Consensus 290 dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~~~~~~-~~h~~---~ 365 (528)
++..+++++.++.|..||..+|+.+..... .+.+.... ..++..++++..++.|..+|.++|+.+... ..... .
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~ 112 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGV 112 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCST
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eecccccccccceeeeEecccCCcceeeeecccccccccc
Confidence 566788888999999999999999877664 33322222 224456677778889999999999998874 32211 1
Q ss_pred eEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEEEeecCCCCCCCee--cCC--CCCccCCceeeee
Q 009715 366 VSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTF--STG--SQSAHWDNVCPVG 441 (528)
Q Consensus 366 V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~--s~~--~~~~~~d~~~~~g 441 (528)
........ ++ ..++.+..++.|..+|+++|+.+.......+.....+ ..+ +.....+..+.+.
T Consensus 113 ~~~~~~~~-------~~------~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 179 (238)
T PF13360_consen 113 RSSSSPAV-------DG------DRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVS 179 (238)
T ss_dssp B--SEEEE-------ET------TEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEE
T ss_pred ccccCceE-------ec------CEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEE
Confidence 12222222 23 3677777899999999999999888876332221111 000 1111112355555
Q ss_pred cCCCCceeeecCCCCceEEeecCCCCeEE-EEEeCCeEEEEECCCeEEEEeCCCCccc
Q 009715 442 TLQPAPSMRDVPKLSPLVAHRVHTEPLSG-LIFTQESVLTVCREGHIKIWMRPGVAES 498 (528)
Q Consensus 442 ~~~~~~~~~d~~~~~~~~~~~~h~~~V~~-l~~s~d~l~t~s~Dg~i~iW~~~~~~~~ 498 (528)
..++.+...|..+.+.+-... ...+.. .....+.|+.++.|+.|..||+.+++..
T Consensus 180 ~~~g~~~~~d~~tg~~~w~~~--~~~~~~~~~~~~~~l~~~~~~~~l~~~d~~tG~~~ 235 (238)
T PF13360_consen 180 SGDGRVVAVDLATGEKLWSKP--ISGIYSLPSVDGGTLYVTSSDGRLYALDLKTGKVV 235 (238)
T ss_dssp CCTSSEEEEETTTTEEEEEEC--SS-ECECEECCCTEEEEEETTTEEEEEETTTTEEE
T ss_pred cCCCeEEEEECCCCCEEEEec--CCCccCCceeeCCEEEEEeCCCEEEEEECCCCCEE
Confidence 555543334888877553222 233333 3333345777779999999999988653
No 308
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.44 E-value=0.00035 Score=65.97 Aligned_cols=194 Identities=20% Similarity=0.231 Sum_probs=114.6
Q ss_pred CccEEEEeC-CCcEEEEeCCCCCCC------------CCCCCeEEEEecCCcEEEEEccccccccccceeeeeeeccCCc
Q 009715 141 KGTYIIFNV-GDAIFISDLNSQDKD------------AKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGS 207 (528)
Q Consensus 141 ~g~~~~~~~-~~~i~v~~~~~~~~~------------~~~~~~l~~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 207 (528)
++.++..+. +..++.++....... ...+..|+++...+ +.++|+.+.. ....... ....
T Consensus 11 ~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~~~G~~~~~~~g~l~v~~~~~-~~~~d~~~g~------~~~~~~~-~~~~ 82 (246)
T PF08450_consen 11 DGRLYWVDIPGGRIYRVDPDTGEVEVIDLPGPNGMAFDRPDGRLYVADSGG-IAVVDPDTGK------VTVLADL-PDGG 82 (246)
T ss_dssp TTEEEEEETTTTEEEEEETTTTEEEEEESSSEEEEEEECTTSEEEEEETTC-EEEEETTTTE------EEEEEEE-ETTC
T ss_pred CCEEEEEEcCCCEEEEEECCCCeEEEEecCCCceEEEEccCCEEEEEEcCc-eEEEecCCCc------EEEEeec-cCCC
Confidence 455555554 234555555443322 32346666666644 4555776521 1111111 1111
Q ss_pred ccCCceeEEEEeeCCCcEEEEEeCC--------ceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecC
Q 009715 208 VNNSRCTSVTWVPGGDGAFVVGHAD--------GNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQ 279 (528)
Q Consensus 208 ~h~~~v~~l~~~p~g~~~l~tg~~d--------g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 279 (528)
......+++++.|+|. +.++.... |.|..++.. +. +..+...-
T Consensus 83 ~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~--~~--------------------------~~~~~~~~ 133 (246)
T PF08450_consen 83 VPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD--GK--------------------------VTVVADGL 133 (246)
T ss_dssp SCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT--SE--------------------------EEEEEEEE
T ss_pred cccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC--Ce--------------------------EEEEecCc
Confidence 1456789999999998 66665543 445555544 11 11111123
Q ss_pred CCeEEEEECCCCCEEEE-EeCCCcEEEEecCCc-e------EEeeecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 009715 280 GSINSIAFSTDGTYLAT-VGRDGYLRVFDYSKE-Q------LICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSME 351 (528)
Q Consensus 280 ~~v~~l~~spdg~~l~s-~~~dg~i~vwd~~~~-~------~~~~~~~~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~ 351 (528)
...+.|+|+||++.|+. -+..+.|..+++... . .+..+....+..-.+++..+|++.++....+.|.++|.+
T Consensus 134 ~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~ 213 (246)
T PF08450_consen 134 GFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD 213 (246)
T ss_dssp SSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT
T ss_pred ccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC
Confidence 56789999999987764 456778999998532 1 122222222346789999999988888889999999987
Q ss_pred CCeEEEEeecCCCCeEEEEEe
Q 009715 352 DRKVVAWGEGHNSWVSGVAFD 372 (528)
Q Consensus 352 ~~~~~~~~~~h~~~V~~v~f~ 372 (528)
++.+..+.-....+++++|-
T Consensus 214 -G~~~~~i~~p~~~~t~~~fg 233 (246)
T PF08450_consen 214 -GKLLREIELPVPRPTNCAFG 233 (246)
T ss_dssp -SCEEEEEE-SSSSEEEEEEE
T ss_pred -ccEEEEEcCCCCCEEEEEEE
Confidence 88888777555689999994
No 309
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.44 E-value=1.3e-07 Score=97.54 Aligned_cols=196 Identities=17% Similarity=0.121 Sum_probs=141.2
Q ss_pred CCCCCCeEEEeecCCCeEEEEECCCCCEEEEEeCCCcEEEEecCCceEEeeecccCCCeEEEEEcCCCCEEEEEeCC--C
Q 009715 266 YSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGED--D 343 (528)
Q Consensus 266 ~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~sg~~d--g 343 (528)
+++.++.+.++.|+...+|++|+-+.++|++|+..|.|++|++.+|.......+|..+|+-+.-+.||..+++.+.- -
T Consensus 1088 FSRFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~P 1167 (1516)
T KOG1832|consen 1088 FSRFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSP 1167 (1516)
T ss_pred HhhcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCc
Confidence 45677888889999999999999999999999999999999999999999999999999999999999987765443 2
Q ss_pred cEEEEECCC-CeEEEEeecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEEEeecC-----
Q 009715 344 LVQVWSMED-RKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRG----- 417 (528)
Q Consensus 344 ~v~vwd~~~-~~~~~~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~----- 417 (528)
...+|++.+ +...+++. .-.++.|+. .- ..-+.|..-....+||+.++....++-..
T Consensus 1168 lsaLW~~~s~~~~~Hsf~----ed~~vkFsn-------~~------q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~ 1230 (1516)
T KOG1832|consen 1168 LSALWDASSTGGPRHSFD----EDKAVKFSN-------SL------QFRALGTEADDALLYDVQTCSPLQTYLTDTVTSS 1230 (1516)
T ss_pred hHHHhccccccCcccccc----ccceeehhh-------hH------HHHHhcccccceEEEecccCcHHHHhcCcchhhh
Confidence 578999875 34444443 345678875 21 11222333356889999998877664322
Q ss_pred CCCCCCeecCCCCCccCCceeeeecCCCCceeeecCCCCceEEeecCCCCeEEEEEeCCe--EEEEECCCeEEEEeCCCC
Q 009715 418 PLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWMRPGV 495 (528)
Q Consensus 418 ~~~~~~~~s~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~~s~d~--l~t~s~Dg~i~iW~~~~~ 495 (528)
.......|+++.....||+. +||++..+.+..+......+. =.|+|.+ ++.-+ -|||+.+-
T Consensus 1231 y~~n~a~FsP~D~LIlndGv-----------LWDvR~~~aIh~FD~ft~~~~-G~FHP~g~eVIINS-----EIwD~RTF 1293 (1516)
T KOG1832|consen 1231 YSNNLAHFSPCDTLILNDGV-----------LWDVRIPEAIHRFDQFTDYGG-GGFHPSGNEVIINS-----EIWDMRTF 1293 (1516)
T ss_pred hhccccccCCCcceEeeCce-----------eeeeccHHHHhhhhhheeccc-ccccCCCceEEeec-----hhhhhHHH
Confidence 23456788888877777754 688887766665544332222 2388876 55555 38887653
No 310
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.36 E-value=2.5e-05 Score=80.61 Aligned_cols=153 Identities=14% Similarity=0.174 Sum_probs=111.1
Q ss_pred cCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEEC
Q 009715 209 NNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFS 288 (528)
Q Consensus 209 h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 288 (528)
....+.|++++.. .|+-|..+|.|++++..- .....+ .|... .
T Consensus 38 ~~D~is~~av~~~---~~~~GtH~g~v~~~~~~~--~~~~~~--------------------------~~s~~------~ 80 (846)
T KOG2066|consen 38 QNDAISCCAVHDK---FFALGTHRGAVYLTTCQG--NPKTNF--------------------------DHSSS------I 80 (846)
T ss_pred hhhHHHHHHhhcc---eeeeccccceEEEEecCC--cccccc--------------------------ccccc------c
Confidence 4567888888644 899999999999999863 111111 11111 4
Q ss_pred CCCCEEEEEeCCCcEEEEecCCceEEeeecccCCCeEEEEEcCC-----CCEEEEEeCCCcEEEEECCC-C-eEEEEeec
Q 009715 289 TDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMD-----GKYILTGGEDDLVQVWSMED-R-KVVAWGEG 361 (528)
Q Consensus 289 pdg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~-----g~~l~sg~~dg~v~vwd~~~-~-~~~~~~~~ 361 (528)
-+|.++++|+.||.|.|..+-+.+...++. ...++..|+++|+ .+.+++|+.-| +.++.-+- + +.-..+..
T Consensus 81 ~~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~ 158 (846)
T KOG2066|consen 81 LEGEYVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSE 158 (846)
T ss_pred cCCceEEEecCCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeec
Confidence 479999999999999999999888877665 5678999999997 56899999888 77765332 1 11113455
Q ss_pred CCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEEEeec
Q 009715 362 HNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRR 416 (528)
Q Consensus 362 h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~ 416 (528)
-.++|.++.|. | .+++-+..+ -|++||+..++.+..+..
T Consensus 159 ~eG~I~~i~W~---------g------~lIAWand~-Gv~vyd~~~~~~l~~i~~ 197 (846)
T KOG2066|consen 159 GEGPIHSIKWR---------G------NLIAWANDD-GVKVYDTPTRQRLTNIPP 197 (846)
T ss_pred CccceEEEEec---------C------cEEEEecCC-CcEEEeccccceeeccCC
Confidence 67899999995 4 466666555 589999999887766654
No 311
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.35 E-value=0.0002 Score=77.56 Aligned_cols=214 Identities=16% Similarity=0.200 Sum_probs=127.8
Q ss_pred CCCCCeEEEEecCCcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCC
Q 009715 165 AKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDG 244 (528)
Q Consensus 165 ~~~~~~l~~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~ 244 (528)
..+.+.+.+++..|+|.+.|..+.... ... .-...|.+++|+||.+ +++....++++.+-...-..
T Consensus 77 l~d~~~i~v~~~~G~iilvd~et~~~e------ivg-------~vd~GI~aaswS~Dee-~l~liT~~~tll~mT~~f~~ 142 (1265)
T KOG1920|consen 77 LADTNSICVITALGDIILVDPETLELE------IVG-------NVDNGISAASWSPDEE-LLALITGRQTLLFMTKDFEP 142 (1265)
T ss_pred ecccceEEEEecCCcEEEEccccccee------eee-------eccCceEEEeecCCCc-EEEEEeCCcEEEEEeccccc
Confidence 467888999999999999988763211 111 1456799999999999 89988888888776543211
Q ss_pred CCCCcc----------ccc---cccceeEEeccCCCCCCCeE--------EEeecCCCeEEEEECCCCCEEEEE-----e
Q 009715 245 AGDSSF----------PVI---KDQTQFSVAHPRYSKSNPIA--------RWHICQGSINSIAFSTDGTYLATV-----G 298 (528)
Q Consensus 245 ~~~~~~----------~~~---~~~~~~~~~~~~~~~~~~~~--------~~~~h~~~v~~l~~spdg~~l~s~-----~ 298 (528)
-.+..+ ... ....+|.-...+....+++. .++ ..=+.|.|--||.++|+. .
T Consensus 143 i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~---~~~~~IsWRgDg~~fAVs~~~~~~ 219 (1265)
T KOG1920|consen 143 IAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQD---DHKTSISWRGDGEYFAVSFVESET 219 (1265)
T ss_pred hhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhc---cCCceEEEccCCcEEEEEEEeccC
Confidence 111111 000 00111111111000000000 111 122468999999999983 2
Q ss_pred CCCcEEEEecCCceEEeeecccCCCeEEEEEcCCCCEEEEEe---CCCcEEEEECCC---CeEEEEeecCCCCeEEEEEe
Q 009715 299 RDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGG---EDDLVQVWSMED---RKVVAWGEGHNSWVSGVAFD 372 (528)
Q Consensus 299 ~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~sg~---~dg~v~vwd~~~---~~~~~~~~~h~~~V~~v~f~ 372 (528)
....|+|||-+ |.+-..-....+--.+++|-|.|.++++-. .|+.|.+|.-+. ++....+......|..++|+
T Consensus 220 ~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wn 298 (1265)
T KOG1920|consen 220 GTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWN 298 (1265)
T ss_pred CceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeec
Confidence 33789999987 544333233334446799999999988743 356788887542 22222223334459999998
Q ss_pred cCCCCCCCCCCccceeEEEEE---EeCCCeEEEEEccCCe
Q 009715 373 SYWSQPNSDGTAETVMYRFGS---VGQDTRLLLWDLEMDE 409 (528)
Q Consensus 373 p~~~~~~~dg~~~~~~~~l~s---~s~D~~i~lwd~~~~~ 409 (528)
. ++ ..|+. ......|++|-+.+..
T Consensus 299 s-------~s------diLAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 299 S-------NS------DILAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred C-------CC------CceeeeecccccceEEEEEecCeE
Confidence 7 76 45655 4555669999887654
No 312
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.34 E-value=0.0006 Score=68.86 Aligned_cols=121 Identities=18% Similarity=0.253 Sum_probs=87.1
Q ss_pred CCeEEEEECC-CCCEEEEE----eCCCc----EEEEecCCceEEe---eecccCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 009715 280 GSINSIAFST-DGTYLATV----GRDGY----LRVFDYSKEQLIC---GGKSYYGALLCCAWSMDGKYILTGGEDDLVQV 347 (528)
Q Consensus 280 ~~v~~l~~sp-dg~~l~s~----~~dg~----i~vwd~~~~~~~~---~~~~~~~~v~~l~~sp~g~~l~sg~~dg~v~v 347 (528)
....++.|+- +...+.+. +.+|. -.+|++...+... +-......+.|++++|+.+.++.|+.||.|.+
T Consensus 206 ~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiL 285 (545)
T PF11768_consen 206 NDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIIL 285 (545)
T ss_pred CCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEE
Confidence 4457788887 55566554 33443 3466665443221 11236678999999999999999999999999
Q ss_pred EECCCCeEEEEeecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEEEee
Q 009715 348 WSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLR 415 (528)
Q Consensus 348 wd~~~~~~~~~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~ 415 (528)
||...+... +..+.-.++.++|+| +| ..+++|+.-|.+.+||+.-......+.
T Consensus 286 yD~~~~~t~--~~ka~~~P~~iaWHp-------~g------ai~~V~s~qGelQ~FD~ALspi~~qLl 338 (545)
T PF11768_consen 286 YDTTRGVTL--LAKAEFIPTLIAWHP-------DG------AIFVVGSEQGELQCFDMALSPIKMQLL 338 (545)
T ss_pred EEcCCCeee--eeeecccceEEEEcC-------CC------cEEEEEcCCceEEEEEeecCccceeec
Confidence 998776333 223556688999999 99 799999999999999998766544443
No 313
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.31 E-value=0.0025 Score=57.81 Aligned_cols=304 Identities=13% Similarity=0.143 Sum_probs=151.6
Q ss_pred ccCCCCCCcceeeeCCCccEEEEeCCCcEEEEeCCCCCCC----CCCCCeEEEEecCCcEEEEEccccccccccceeeee
Q 009715 125 GASSSSTSMTNTNFDGKGTYIIFNVGDAIFISDLNSQDKD----AKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAH 200 (528)
Q Consensus 125 ~~s~s~~s~~~~~~~~~g~~~~~~~~~~i~v~~~~~~~~~----~~~~~~l~~g~~~G~v~iwd~~~~~~~~~~~~~~~~ 200 (528)
++-....+..+.-.+..+.+++.|....-.+|+-.-+... ---++++++|..+|.+|+.++.+.. +. .
T Consensus 16 LVV~~dskT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~vvgdfVV~GCy~g~lYfl~~~tGs-----~~---w 87 (354)
T KOG4649|consen 16 LVVCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIVVGDFVVLGCYSGGLYFLCVKTGS-----QI---W 87 (354)
T ss_pred EEEecCCceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEEECCEEEEEEccCcEEEEEecchh-----he---e
Confidence 3333333455555667788888887776666665544333 2357789999999999999988721 11 1
Q ss_pred eeccCCcccCCceeE-EEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecC
Q 009715 201 HYNKDGSVNNSRCTS-VTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQ 279 (528)
Q Consensus 201 ~~~~~~~~h~~~v~~-l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 279 (528)
.|. -.+.|.+ ....+++. ++..|+.|++.+..|..+.+ .+...+...
T Consensus 88 ~f~-----~~~~vk~~a~~d~~~g-lIycgshd~~~yalD~~~~~--------------------------cVykskcgG 135 (354)
T KOG4649|consen 88 NFV-----ILETVKVRAQCDFDGG-LIYCGSHDGNFYALDPKTYG--------------------------CVYKSKCGG 135 (354)
T ss_pred eee-----ehhhhccceEEcCCCc-eEEEecCCCcEEEecccccc--------------------------eEEecccCC
Confidence 111 1112222 23456777 99999999999999987622 111111111
Q ss_pred CCeEEEEECC-CCCEEEEEeCCCcEEEEecCCc--eEEeeecccCCCeEEEEEcC--CCCEEEEEeCCCcEEEEECCCCe
Q 009715 280 GSINSIAFST-DGTYLATVGRDGYLRVFDYSKE--QLICGGKSYYGALLCCAWSM--DGKYILTGGEDDLVQVWSMEDRK 354 (528)
Q Consensus 280 ~~v~~l~~sp-dg~~l~s~~~dg~i~vwd~~~~--~~~~~~~~~~~~v~~l~~sp--~g~~l~sg~~dg~v~vwd~~~~~ 354 (528)
+-..+-++.| ++. |..+...|.+.--+.++. ..+.... -.+++.. +| -+..+..+.-||.+.-+| ..|+
T Consensus 136 ~~f~sP~i~~g~~s-ly~a~t~G~vlavt~~~~~~~~~w~~~-~~~PiF~---splcv~~sv~i~~VdG~l~~f~-~sG~ 209 (354)
T KOG4649|consen 136 GTFVSPVIAPGDGS-LYAAITAGAVLAVTKNPYSSTEFWAAT-RFGPIFA---SPLCVGSSVIITTVDGVLTSFD-ESGR 209 (354)
T ss_pred ceeccceecCCCce-EEEEeccceEEEEccCCCCcceehhhh-cCCcccc---CceeccceEEEEEeccEEEEEc-CCCc
Confidence 2222334445 444 333334455544444433 1111111 1222211 11 133444555566666555 4454
Q ss_pred EEEEeecCCCCe-----------EEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEEEeecCCCCCCC
Q 009715 355 VVAWGEGHNSWV-----------SGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSP 423 (528)
Q Consensus 355 ~~~~~~~h~~~V-----------~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~ 423 (528)
.+.... ..++| ..+.+.. ++ .+.+.--...-.+|...++........ ..+
T Consensus 210 qvwr~~-t~GpIf~~Pc~s~Ps~q~i~~~~-------~~-------Cf~~~~p~~ghL~w~~~~g~t~~vy~~----p~l 270 (354)
T KOG4649|consen 210 QVWRPA-TKGPIFMEPCESRPSCQQISLEN-------EN-------CFCAPLPIAGHLLWATQSGTTLHVYLS----PKL 270 (354)
T ss_pred EEEeec-CCCceecccccCCCcceEEEEec-------CC-------eEEEeccccceEEEEecCCcEEEEEeC----ccc
Confidence 444332 22222 1222221 22 233333333445677766644333221 112
Q ss_pred eecCCCCCccCCceeeeecCCCCceeeecCCCCceEEeecCCCCeEEEE--------Ee-C---C-eEEEEECCCeEEEE
Q 009715 424 TFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLI--------FT-Q---E-SVLTVCREGHIKIW 490 (528)
Q Consensus 424 ~~s~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~--------~s-~---d-~l~t~s~Dg~i~iW 490 (528)
.|..-......+..+...+.++.+.+..+ .+.+.....|.+.+..+. |+ | + .|+.++.|..|+-|
T Consensus 271 ~F~~h~~~~S~~~ll~~~s~dgkv~il~~--~~sl~~~~s~~g~lq~~~~~el~~eIFsSPvii~grl~igcRDdYv~cl 348 (354)
T KOG4649|consen 271 RFDLHSPGISYPKLLRRSSGDGKVMILMT--SKSLAEISSNGGELQNLEAIELSNEIFSSPVIIDGRLLIGCRDDYVRCL 348 (354)
T ss_pred ceeccCCCCcchhhhhhhcCCCcEEEEEe--cccccccccCCCccceEEEeecCcccccCCeEEccEEEEEEccCeEEEE
Confidence 23222223333444444555554444433 233444455555444433 22 3 2 39999999999999
Q ss_pred eCCCC
Q 009715 491 MRPGV 495 (528)
Q Consensus 491 ~~~~~ 495 (528)
|+.+.
T Consensus 349 dl~~~ 353 (354)
T KOG4649|consen 349 DLDTW 353 (354)
T ss_pred ecccc
Confidence 98763
No 314
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=3.7e-06 Score=80.92 Aligned_cols=217 Identities=16% Similarity=0.089 Sum_probs=145.2
Q ss_pred cCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEEC
Q 009715 209 NNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFS 288 (528)
Q Consensus 209 h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 288 (528)
|...|+.+.-... + ++.+++.||.++.|....- ...+.+..+..|-+.|.+++.+
T Consensus 8 hrd~i~hv~~tka-~-fiiqASlDGh~KFWkKs~i-----------------------sGvEfVKhFraHL~~I~sl~~S 62 (558)
T KOG0882|consen 8 HRDVITHVFPTKA-K-FIIQASLDGHKKFWKKSRI-----------------------SGVEFVKHFRAHLGVILSLAVS 62 (558)
T ss_pred ccceeeeEeeehh-h-eEEeeecchhhhhcCCCCc-----------------------cceeehhhhHHHHHHHHhhhcc
Confidence 7777877665543 3 8999999999999986530 1124455667778889999999
Q ss_pred CCCCEEEEEeC-CCcEEEEecCCceEEeeecccCCCeEEEEE--cCC-CC-EEEE-EeCCCcEEEEECCCCe--EEEEee
Q 009715 289 TDGTYLATVGR-DGYLRVFDYSKEQLICGGKSYYGALLCCAW--SMD-GK-YILT-GGEDDLVQVWSMEDRK--VVAWGE 360 (528)
Q Consensus 289 pdg~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~--sp~-g~-~l~s-g~~dg~v~vwd~~~~~--~~~~~~ 360 (528)
-|+.++.+.+. |..++++|+.+-..+..++...-+ -.+.| +|. .. .+++ .-.++.+.|+|-...- ....-.
T Consensus 63 ~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lP-g~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkk 141 (558)
T KOG0882|consen 63 YDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLP-GFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKK 141 (558)
T ss_pred ccceeEeeccCcccceeEEEeeccchhhhcccccCC-CceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecc
Confidence 99999999777 999999999877666444432211 12233 332 11 3333 3457899999976543 233334
Q ss_pred cCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEEEeecCCCCCCCeecCCCCCccCCceeee
Q 009715 361 GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPV 440 (528)
Q Consensus 361 ~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~d~~~~~ 440 (528)
-|..+|.++.+.+ -+ ..+++....|.|.-|.... ..+.. ...+.
T Consensus 142 lH~sPV~~i~y~q-------a~------Ds~vSiD~~gmVEyWs~e~--~~qfP-----r~~l~---------------- 185 (558)
T KOG0882|consen 142 LHFSPVKKIRYNQ-------AG------DSAVSIDISGMVEYWSAEG--PFQFP-----RTNLN---------------- 185 (558)
T ss_pred cccCceEEEEeec-------cc------cceeeccccceeEeecCCC--cccCc-----ccccc----------------
Confidence 5999999999998 66 5788888889999998763 11000 00111
Q ss_pred ecCCCCceeeecCCCCceEEeecCCCCeEEEEEeCCe--EEEEECCCeEEEEeCCCCc
Q 009715 441 GTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWMRPGVA 496 (528)
Q Consensus 441 g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~~s~d~--l~t~s~Dg~i~iW~~~~~~ 496 (528)
|.......+..+........++.|+|++ +.+-+.|..|+++.+.+++
T Consensus 186 ---------~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGk 234 (558)
T KOG0882|consen 186 ---------FELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGK 234 (558)
T ss_pred ---------ccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccch
Confidence 1111111222222335567899999986 8888899999999988776
No 315
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.29 E-value=0.0013 Score=62.36 Aligned_cols=160 Identities=16% Similarity=0.177 Sum_probs=110.4
Q ss_pred EEEeeCCCcEEEEEe-----CCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCC
Q 009715 216 VTWVPGGDGAFVVGH-----ADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTD 290 (528)
Q Consensus 216 l~~~p~g~~~l~tg~-----~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spd 290 (528)
-.|++||+ +|++.- ..|.|-|||.... ...+..|..|.-....+.+.||
T Consensus 56 g~fs~dG~-~LytTEnd~~~g~G~IgVyd~~~~-------------------------~~ri~E~~s~GIGPHel~l~pD 109 (305)
T PF07433_consen 56 GVFSPDGR-LLYTTENDYETGRGVIGVYDAARG-------------------------YRRIGEFPSHGIGPHELLLMPD 109 (305)
T ss_pred EEEcCCCC-EEEEeccccCCCcEEEEEEECcCC-------------------------cEEEeEecCCCcChhhEEEcCC
Confidence 68999999 777753 4589999998731 3455666666667778899999
Q ss_pred CCEEEEEe------------------CCCcEEEEecCCceEEee--e--cccCCCeEEEEEcCCCCEEEEEeCCC-----
Q 009715 291 GTYLATVG------------------RDGYLRVFDYSKEQLICG--G--KSYYGALLCCAWSMDGKYILTGGEDD----- 343 (528)
Q Consensus 291 g~~l~s~~------------------~dg~i~vwd~~~~~~~~~--~--~~~~~~v~~l~~sp~g~~l~sg~~dg----- 343 (528)
|+.|+++. .+..|...|..+|+++.+ + .-|.-.|.-+++.++|..++..-..+
T Consensus 110 G~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~ 189 (305)
T PF07433_consen 110 GETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDA 189 (305)
T ss_pred CCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCcc
Confidence 98887762 224567777788888766 3 23667899999999987555443222
Q ss_pred --cEEEEECCCCeEEEEe-------ecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEEEe
Q 009715 344 --LVQVWSMEDRKVVAWG-------EGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPL 414 (528)
Q Consensus 344 --~v~vwd~~~~~~~~~~-------~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~ 414 (528)
.|.+++... .+..+ ..-...|-+|++++ +|. ...+|+-.-+.+.+||..+++.+...
T Consensus 190 ~PLva~~~~g~--~~~~~~~p~~~~~~l~~Y~gSIa~~~-------~g~-----~ia~tsPrGg~~~~~d~~tg~~~~~~ 255 (305)
T PF07433_consen 190 PPLVALHRRGG--ALRLLPAPEEQWRRLNGYIGSIAADR-------DGR-----LIAVTSPRGGRVAVWDAATGRLLGSV 255 (305)
T ss_pred CCeEEEEcCCC--cceeccCChHHHHhhCCceEEEEEeC-------CCC-----EEEEECCCCCEEEEEECCCCCEeecc
Confidence 244444332 22222 23457899999998 872 34466667899999999999887654
Q ss_pred e
Q 009715 415 R 415 (528)
Q Consensus 415 ~ 415 (528)
.
T Consensus 256 ~ 256 (305)
T PF07433_consen 256 P 256 (305)
T ss_pred c
Confidence 3
No 316
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.25 E-value=7.6e-05 Score=75.14 Aligned_cols=72 Identities=19% Similarity=0.216 Sum_probs=61.7
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEEEecCCceEEeeecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 009715 279 QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMED 352 (528)
Q Consensus 279 ~~~v~~l~~spdg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~ 352 (528)
...|.|++++|+...|+.|+.||.|++||...+..... ...-....++|+|+|.++++|+..|.+.+||+.-
T Consensus 259 ~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~--ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 259 PSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA--KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred CCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee--eecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence 57899999999999999999999999999986644322 2345577899999999999999999999999864
No 317
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.18 E-value=0.00012 Score=74.73 Aligned_cols=155 Identities=13% Similarity=0.128 Sum_probs=98.6
Q ss_pred CCCCCeEEEEecCCcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCC
Q 009715 165 AKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDG 244 (528)
Q Consensus 165 ~~~~~~l~~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~ 244 (528)
...+.++++|.+.|.|++|+-.... . ...+..+ ..+.+..+..+++.. ++|.|+..|.|.|+.+....
T Consensus 42 dst~~~l~~GsS~G~lyl~~R~~~~-----~----~~~~~~~--~~~~~~~~~vs~~e~-lvAagt~~g~V~v~ql~~~~ 109 (726)
T KOG3621|consen 42 DATEEYLAMGSSAGSVYLYNRHTGE-----M----RKLKNEG--ATGITCVRSVSSVEY-LVAAGTASGRVSVFQLNKEL 109 (726)
T ss_pred ecCCceEEEecccceEEEEecCchh-----h----hcccccC--ccceEEEEEecchhH-hhhhhcCCceEEeehhhccC
Confidence 3567899999999999999855411 0 0111111 334556677788777 89999999999999988733
Q ss_pred CCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCCCCEEEEEeCCCcEEEEecCCce----EEeeeccc
Q 009715 245 AGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQ----LICGGKSY 320 (528)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~~~dg~i~vwd~~~~~----~~~~~~~~ 320 (528)
.....+-...+ +.|...|++++|++|+..+++|...|.|..-.++... ..+.+...
T Consensus 110 p~~~~~~t~~d--------------------~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ 169 (726)
T KOG3621|consen 110 PRDLDYVTPCD--------------------KSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSE 169 (726)
T ss_pred CCcceeecccc--------------------ccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeecc
Confidence 32211111000 1167899999999999999999999999988887621 11222223
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe
Q 009715 321 YGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRK 354 (528)
Q Consensus 321 ~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~ 354 (528)
.+.|..+... ++.+|++.. - ...+++++.+.
T Consensus 170 ds~IVQlD~~-q~~LLVStl-~-r~~Lc~tE~et 200 (726)
T KOG3621|consen 170 DSEIVQLDYL-QSYLLVSTL-T-RCILCQTEAET 200 (726)
T ss_pred CcceEEeecc-cceehHhhh-h-hhheeecchhH
Confidence 5667666654 333344333 2 34467776554
No 318
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.16 E-value=8.8e-05 Score=76.78 Aligned_cols=175 Identities=17% Similarity=0.241 Sum_probs=119.2
Q ss_pred CCCCCeEEEEecCCcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCC
Q 009715 165 AKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDG 244 (528)
Q Consensus 165 ~~~~~~l~~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~ 244 (528)
...++.|+.|+.+|.|++++..... + ..+. |... ..+|. ++++|+.||.|.|..+.++.
T Consensus 46 av~~~~~~~GtH~g~v~~~~~~~~~----~-----~~~~-----~s~~------~~~Ge-y~asCS~DGkv~I~sl~~~~ 104 (846)
T KOG2066|consen 46 AVHDKFFALGTHRGAVYLTTCQGNP----K-----TNFD-----HSSS------ILEGE-YVASCSDDGKVVIGSLFTDD 104 (846)
T ss_pred HhhcceeeeccccceEEEEecCCcc----c-----cccc-----cccc------ccCCc-eEEEecCCCcEEEeeccCCc
Confidence 4568899999999999999876411 0 0011 3333 66888 99999999999999887632
Q ss_pred CCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCC-----CCEEEEEeCCCcEEEEecCC---ceEEee
Q 009715 245 AGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTD-----GTYLATVGRDGYLRVFDYSK---EQLICG 316 (528)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spd-----g~~l~s~~~dg~i~vwd~~~---~~~~~~ 316 (528)
.. ..++ -..++.+++++|| .+.+++|+.-| +.++.-.- ...+ .
T Consensus 105 ~~--------------------------~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~ 155 (846)
T KOG2066|consen 105 EI--------------------------TQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-V 155 (846)
T ss_pred cc--------------------------eeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce-e
Confidence 11 1111 1368899999998 56899999888 76665331 1111 2
Q ss_pred ecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCe------EEEEEecCCCCCCCCCCccceeEE
Q 009715 317 GKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWV------SGVAFDSYWSQPNSDGTAETVMYR 390 (528)
Q Consensus 317 ~~~~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~~~~~~~~h~~~V------~~v~f~p~~~~~~~dg~~~~~~~~ 390 (528)
+..-.++|.++.|. |.++|-++.+| |+|||+.+++.+..++.....+ ..+.|.+ +. +
T Consensus 156 l~~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~-------~~-------~ 218 (846)
T KOG2066|consen 156 LSEGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQD-------ED-------R 218 (846)
T ss_pred eecCccceEEEEec--CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecC-------CC-------e
Confidence 34456899999996 78899887665 8999999988877776433333 3456655 43 4
Q ss_pred EEEEeCCCeEEEEEccC
Q 009715 391 FGSVGQDTRLLLWDLEM 407 (528)
Q Consensus 391 l~s~s~D~~i~lwd~~~ 407 (528)
|+.| ...+|+|..++.
T Consensus 219 LVIG-W~d~v~i~~I~~ 234 (846)
T KOG2066|consen 219 LVIG-WGDSVKICSIKK 234 (846)
T ss_pred EEEe-cCCeEEEEEEec
Confidence 4444 455788888873
No 319
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=2.4e-05 Score=75.47 Aligned_cols=227 Identities=13% Similarity=0.063 Sum_probs=150.0
Q ss_pred CCeEEEEecCCcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeC-CceEEEEEcCCCCCC
Q 009715 168 GHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHA-DGNLYVYEKSKDGAG 246 (528)
Q Consensus 168 ~~~l~~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~-dg~v~vwd~~~~~~~ 246 (528)
.++++.++.||.++.|--.. ..-..|.+....|...|..++.+-++. ++.+.+. |..++++|+..-...
T Consensus 20 a~fiiqASlDGh~KFWkKs~---------isGvEfVKhFraHL~~I~sl~~S~dg~-L~~Sv~d~Dhs~KvfDvEn~Dmi 89 (558)
T KOG0882|consen 20 AKFIIQASLDGHKKFWKKSR---------ISGVEFVKHFRAHLGVILSLAVSYDGW-LFRSVEDPDHSVKVFDVENFDMI 89 (558)
T ss_pred hheEEeeecchhhhhcCCCC---------ccceeehhhhHHHHHHHHhhhccccce-eEeeccCcccceeEEEeeccchh
Confidence 45778899999999885322 112345666667999999999999998 8888777 999999998752211
Q ss_pred ----CCccccccc-----c-ceeEEe-----------ccCCCCC-CCeEEEeecCCCeEEEEECCCCCEEEEEeCCCcEE
Q 009715 247 ----DSSFPVIKD-----Q-TQFSVA-----------HPRYSKS-NPIARWHICQGSINSIAFSTDGTYLATVGRDGYLR 304 (528)
Q Consensus 247 ----~~~~~~~~~-----~-~~~~~~-----------~~~~~~~-~~~~~~~~h~~~v~~l~~spdg~~l~s~~~dg~i~ 304 (528)
..-+|.... . ....++ ....... .....-..|..+|.++.+++-+..+++....|.|.
T Consensus 90 nmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVE 169 (558)
T KOG0882|consen 90 NMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVE 169 (558)
T ss_pred hhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeE
Confidence 111111100 0 000111 0111222 33333455899999999999999999999899999
Q ss_pred EEecCC------ceEEeee---------cccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEee---------
Q 009715 305 VFDYSK------EQLICGG---------KSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGE--------- 360 (528)
Q Consensus 305 vwd~~~------~~~~~~~---------~~~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~~~~~~~--------- 360 (528)
-|..+. .+....+ ........++.|+|++..+.+-+.|..|+++++++++.++.+.
T Consensus 170 yWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q 249 (558)
T KOG0882|consen 170 YWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQ 249 (558)
T ss_pred eecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhc
Confidence 999872 1111111 1234567789999999999999999999999999887555432
Q ss_pred -----------------------cCCC-CeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEEEeec
Q 009715 361 -----------------------GHNS-WVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRR 416 (528)
Q Consensus 361 -----------------------~h~~-~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~ 416 (528)
.|.. .-+.+.|+. .| ++|+-++-=| |++.++.++++++.+..
T Consensus 250 ~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fde-------s~------~flly~t~~g-ikvin~~tn~v~ri~gk 315 (558)
T KOG0882|consen 250 PKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDE-------SG------NFLLYGTILG-IKVINLDTNTVVRILGK 315 (558)
T ss_pred cccccccceeehhhhhhHHhhHhhhcCcccceeEEcC-------CC------CEEEeeccee-EEEEEeecCeEEEEecc
Confidence 1222 123455655 55 4666665443 89999999999888765
Q ss_pred CC
Q 009715 417 GP 418 (528)
Q Consensus 417 ~~ 418 (528)
..
T Consensus 316 ~e 317 (558)
T KOG0882|consen 316 DE 317 (558)
T ss_pred ch
Confidence 43
No 320
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.14 E-value=6.4e-05 Score=78.70 Aligned_cols=180 Identities=14% Similarity=0.141 Sum_probs=120.5
Q ss_pred CCCEEEEEeCCCcEEEEecCCceEEeeecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCeEEE
Q 009715 290 DGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGV 369 (528)
Q Consensus 290 dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~v 369 (528)
++..++.|+....+..+|+++.+..+...-..+.|.-+ ..+++++.+|...|.|.+-|.++.+.++++..|.+.|.++
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~im--R~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDf 223 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIM--RYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDF 223 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEE--EecCcEEEeecccceEEeecCCcCceeeeeeccccceeee
Confidence 45567888877889999999888776654334344433 4578999999999999999999999999999999999887
Q ss_pred EEecCCCCCCCCCCccceeEEEEEEeC---------CCeEEEEEccCCeEEEEeecCCCCCCCeecCCCCCccCCceeee
Q 009715 370 AFDSYWSQPNSDGTAETVMYRFGSVGQ---------DTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPV 440 (528)
Q Consensus 370 ~f~p~~~~~~~dg~~~~~~~~l~s~s~---------D~~i~lwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~d~~~~~ 440 (528)
.. .| ++|++||. |.-|+|||+|+-+.+.++.......-+.|.|.- ...+.+
T Consensus 224 Dv---------~G------NlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl-----~t~~~V 283 (1118)
T KOG1275|consen 224 DV---------QG------NLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSL-----TTRLAV 283 (1118)
T ss_pred ec---------cC------CeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccc-----cceEEE
Confidence 76 44 68899874 667899999998888776653222222222211 111112
Q ss_pred ecCCCCceeeecC-CCCc-eEEeecC--CCCeEEEEEeCCe--EEEEECCCeEEEEe
Q 009715 441 GTLQPAPSMRDVP-KLSP-LVAHRVH--TEPLSGLIFTQES--VLTVCREGHIKIWM 491 (528)
Q Consensus 441 g~~~~~~~~~d~~-~~~~-~~~~~~h--~~~V~~l~~s~d~--l~t~s~Dg~i~iW~ 491 (528)
.+..+-...-|.. ...| ...+..| ...+..+.+++++ |+.+-.+|.|.+|.
T Consensus 284 ~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 284 TSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred EecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 2222222222211 1112 2222222 3348888898864 99999999999998
No 321
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.06 E-value=3.1e-06 Score=87.70 Aligned_cols=193 Identities=14% Similarity=0.148 Sum_probs=130.9
Q ss_pred cCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEEC
Q 009715 209 NNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFS 288 (528)
Q Consensus 209 h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 288 (528)
|....+|++|+-+.+ .|++|...|.|++|++.++. .......|+.+|+-+.-+
T Consensus 1100 ~~~~fTc~afs~~~~-hL~vG~~~Geik~~nv~sG~--------------------------~e~s~ncH~SavT~vePs 1152 (1516)
T KOG1832|consen 1100 ETALFTCIAFSGGTN-HLAVGSHAGEIKIFNVSSGS--------------------------MEESVNCHQSAVTLVEPS 1152 (1516)
T ss_pred cccceeeEEeecCCc-eEEeeeccceEEEEEccCcc--------------------------cccccccccccccccccc
Confidence 778899999999888 89999999999999998732 223345688999999988
Q ss_pred CCCCEEEEEeCCC--cEEEEecCC-ceEEeeecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEe-ec---
Q 009715 289 TDGTYLATVGRDG--YLRVFDYSK-EQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWG-EG--- 361 (528)
Q Consensus 289 pdg~~l~s~~~dg--~i~vwd~~~-~~~~~~~~~~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~~~~~~-~~--- 361 (528)
.||..+++.+.-. ...+|++.. +...+.+. .-.++.|+..-..-+.|.......|||++++.++.++ .+
T Consensus 1153 ~dgs~~Ltsss~S~PlsaLW~~~s~~~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~ 1228 (1516)
T KOG1832|consen 1153 VDGSTQLTSSSSSSPLSALWDASSTGGPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVT 1228 (1516)
T ss_pred CCcceeeeeccccCchHHHhccccccCcccccc----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchh
Confidence 8998877765433 467899863 33444433 3567888876665666666678999999998776553 21
Q ss_pred CCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEEEeecCCCCCCCeecCCCCCccCCceeeee
Q 009715 362 HNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVG 441 (528)
Q Consensus 362 h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~d~~~~~g 441 (528)
..-.-+.+.|+| +. .+++ .|| .+||++..+.++.+.....-..-.|.+.+.-.. +
T Consensus 1229 ~~y~~n~a~FsP-------~D------~LIl---ndG--vLWDvR~~~aIh~FD~ft~~~~G~FHP~g~eVI------I- 1283 (1516)
T KOG1832|consen 1229 SSYSNNLAHFSP-------CD------TLIL---NDG--VLWDVRIPEAIHRFDQFTDYGGGGFHPSGNEVI------I- 1283 (1516)
T ss_pred hhhhccccccCC-------Cc------ceEe---eCc--eeeeeccHHHHhhhhhheecccccccCCCceEE------e-
Confidence 222336788999 55 3443 244 479999988877776533333344555542111 1
Q ss_pred cCCCCceeeecCCCCceEEe
Q 009715 442 TLQPAPSMRDVPKLSPLVAH 461 (528)
Q Consensus 442 ~~~~~~~~~d~~~~~~~~~~ 461 (528)
...+||+++++.+...
T Consensus 1284 ----NSEIwD~RTF~lLh~V 1299 (1516)
T KOG1832|consen 1284 ----NSEIWDMRTFKLLHSV 1299 (1516)
T ss_pred ----echhhhhHHHHHHhcC
Confidence 1357888877665433
No 322
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.03 E-value=0.00049 Score=71.95 Aligned_cols=211 Identities=15% Similarity=0.164 Sum_probs=131.0
Q ss_pred CCCCCeEEEEecCCcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeCCc-----eEEEEE
Q 009715 165 AKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADG-----NLYVYE 239 (528)
Q Consensus 165 ~~~~~~l~~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg-----~v~vwd 239 (528)
.+.+..+++|+.+|.|.+.+-..+. ...+..+...+...-|.-+++++|++-+.|+ .|+||+
T Consensus 32 ~s~~~~vvigt~~G~V~~Ln~s~~~-------------~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~ 98 (933)
T KOG2114|consen 32 SSSTGSVVIGTADGRVVILNSSFQL-------------IRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWD 98 (933)
T ss_pred cCCCceEEEeeccccEEEeccccee-------------eehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEec
Confidence 4677889999999999888754321 1222234444444445556655777766664 589999
Q ss_pred cCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCCCCEEEEEeCCCcEEEEecC----CceEEe
Q 009715 240 KSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYS----KEQLIC 315 (528)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~~~dg~i~vwd~~----~~~~~~ 315 (528)
++.-..... .........+ ...+| ....++.+++.+.+-+.+|+|-.||.|..+.-+ .+....
T Consensus 99 lek~~~n~s-P~c~~~~ri~-------~~~np-----~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~ 165 (933)
T KOG2114|consen 99 LEKVDKNNS-PQCLYEHRIF-------TIKNP-----TNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQD 165 (933)
T ss_pred ccccCCCCC-cceeeeeeee-------ccCCC-----CCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhcccccee
Confidence 986322110 0000000000 00000 113678899999999999999999999888532 122122
Q ss_pred eecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE-EEEeecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEE
Q 009715 316 GGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKV-VAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSV 394 (528)
Q Consensus 316 ~~~~~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~~-~~~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~ 394 (528)
.......+|+.+.+..+++.++....-..|.+|.+....+ ...+..|...++|..|++ .- ..++.+
T Consensus 166 ~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~-------~t------~qfIca 232 (933)
T KOG2114|consen 166 YSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSD-------GT------YQFICA 232 (933)
T ss_pred eeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCC-------CC------ccEEEe
Confidence 1222357899999999988744444556899999984442 455777888999999986 22 224444
Q ss_pred eCCCeEEEEEccCCeEEEEee
Q 009715 395 GQDTRLLLWDLEMDEIVVPLR 415 (528)
Q Consensus 395 s~D~~i~lwd~~~~~~~~~~~ 415 (528)
+ +..|.+||....+.-..+.
T Consensus 233 ~-~e~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 233 G-SEFLYFYDSDGRGPCFAFE 252 (933)
T ss_pred c-CceEEEEcCCCcceeeeec
Confidence 3 4579999988766655555
No 323
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.02 E-value=0.0022 Score=64.10 Aligned_cols=222 Identities=18% Similarity=0.155 Sum_probs=113.0
Q ss_pred CCeEEEEECCCCCEEEEEeCCCcEEEEecCCceEEeee-cc-------c---------CCCeEEEEEcCCCCEEEEEeCC
Q 009715 280 GSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGG-KS-------Y---------YGALLCCAWSMDGKYILTGGED 342 (528)
Q Consensus 280 ~~v~~l~~spdg~~l~s~~~dg~i~vwd~~~~~~~~~~-~~-------~---------~~~v~~l~~sp~g~~l~sg~~d 342 (528)
..+....|+|+|+.++... ++.|.++++.+++..+.- .+ - .+.-..+-||||+++|+..-.|
T Consensus 43 ~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d 121 (353)
T PF00930_consen 43 PKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFD 121 (353)
T ss_dssp TTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE
T ss_pred cccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEEC
Confidence 5677899999999999986 578999999877554322 11 0 1223568899999998875432
Q ss_pred -Cc-----------------------------------EEEEECCCCeEE--EEe---ecCCCCeEEEEEecCCCCCCCC
Q 009715 343 -DL-----------------------------------VQVWSMEDRKVV--AWG---EGHNSWVSGVAFDSYWSQPNSD 381 (528)
Q Consensus 343 -g~-----------------------------------v~vwd~~~~~~~--~~~---~~h~~~V~~v~f~p~~~~~~~d 381 (528)
.. +.|+|+++++.. ... ..-...+..+.|.+ |
T Consensus 122 ~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~-------d 194 (353)
T PF00930_consen 122 EREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSP-------D 194 (353)
T ss_dssp -TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEE-------T
T ss_pred CcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecC-------C
Confidence 22 333444444321 111 12234567788887 7
Q ss_pred CCccceeEEEEEE--eCC---CeEEEEEccCCeEEEEeecCCC-----CCCCeec-CCCCCccCCceeeeecCCCCceee
Q 009715 382 GTAETVMYRFGSV--GQD---TRLLLWDLEMDEIVVPLRRGPL-----GGSPTFS-TGSQSAHWDNVCPVGTLQPAPSMR 450 (528)
Q Consensus 382 g~~~~~~~~l~s~--s~D---~~i~lwd~~~~~~~~~~~~~~~-----~~~~~~s-~~~~~~~~d~~~~~g~~~~~~~~~ 450 (528)
+ ..|+.. ..+ ..+.++|..++++...++.... .....+. .++ +..+-+...++...++
T Consensus 195 ~------~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~-----~~~l~~s~~~G~~hly 263 (353)
T PF00930_consen 195 G------KRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDG-----NEFLWISERDGYRHLY 263 (353)
T ss_dssp T------EEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTS-----SEEEEEEETTSSEEEE
T ss_pred C------cEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCC-----CEEEEEEEcCCCcEEE
Confidence 7 322222 222 2466677777655444432111 1112222 222 1222222233333333
Q ss_pred --ecCCCCceEEeecCCCCeEE-EEEeCCe---EEEEECC----CeEEEEeCC-CCccccC--CCccc-eEEEccCCceE
Q 009715 451 --DVPKLSPLVAHRVHTEPLSG-LIFTQES---VLTVCRE----GHIKIWMRP-GVAESQS--SSSET-VLSTSSKDKPL 516 (528)
Q Consensus 451 --d~~~~~~~~~~~~h~~~V~~-l~~s~d~---l~t~s~D----g~i~iW~~~-~~~~~~~--~~~~~-vl~~spd~~~l 516 (528)
+..... ...+....-.|.. +.|+++. ++++..+ ..|..-++. ++..... ..... -.+||||++++
T Consensus 264 ~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~ 342 (353)
T PF00930_consen 264 LYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGKYY 342 (353)
T ss_dssp EEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTSSEE
T ss_pred EEcccccc-eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCCCEE
Confidence 333332 3344444556755 5677763 4455543 355555666 4443222 22223 58999999999
Q ss_pred EEeee
Q 009715 517 LSSKV 521 (528)
Q Consensus 517 ~s~~~ 521 (528)
+....
T Consensus 343 v~~~s 347 (353)
T PF00930_consen 343 VDTYS 347 (353)
T ss_dssp EEEEE
T ss_pred EEEEc
Confidence 86543
No 324
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.01 E-value=0.0058 Score=61.35 Aligned_cols=138 Identities=18% Similarity=0.232 Sum_probs=84.8
Q ss_pred ceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCC-Ccccccc-----------ccceeEEeccC-----CCCCCCeEE
Q 009715 212 RCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGD-SSFPVIK-----------DQTQFSVAHPR-----YSKSNPIAR 274 (528)
Q Consensus 212 ~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~-~~~~~~~-----------~~~~~~~~~~~-----~~~~~~~~~ 274 (528)
.|+.+.|.++.. .|++|...|.|.||......... ...+... ......-...+ .....|...
T Consensus 3 ~v~~vs~a~~t~-Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPETL-ELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEETTTT-EEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecCCCc-eEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 588999999987 89999999999999886532221 1111000 01111111110 123456777
Q ss_pred EeecCCCeEEEEECCCCCEEEEEeCCCcEEEEecCCceEEeee--cc------cCCCeEEEEEcC-----CC---CEEEE
Q 009715 275 WHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGG--KS------YYGALLCCAWSM-----DG---KYILT 338 (528)
Q Consensus 275 ~~~h~~~v~~l~~spdg~~l~s~~~dg~i~vwd~~~~~~~~~~--~~------~~~~v~~l~~sp-----~g---~~l~s 338 (528)
++..+++|++++.|.- -++|.|..+|.+.|.|++....+..- .. ....+.++.|.- |+ -.|++
T Consensus 82 ~~~~~g~vtal~~S~i-GFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~v 160 (395)
T PF08596_consen 82 LDAKQGPVTALKNSDI-GFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLV 160 (395)
T ss_dssp E---S-SEEEEEE-BT-SEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEE
T ss_pred eeccCCcEeEEecCCC-cEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEE
Confidence 8888999999999854 48999999999999999877776542 22 234677888863 33 37889
Q ss_pred EeCCCcEEEEECC
Q 009715 339 GGEDDLVQVWSME 351 (528)
Q Consensus 339 g~~dg~v~vwd~~ 351 (528)
|...|.+.+|.+.
T Consensus 161 GTn~G~v~~fkIl 173 (395)
T PF08596_consen 161 GTNSGNVLTFKIL 173 (395)
T ss_dssp EETTSEEEEEEEE
T ss_pred EeCCCCEEEEEEe
Confidence 9999999999874
No 325
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.00 E-value=0.0021 Score=66.64 Aligned_cols=111 Identities=17% Similarity=0.155 Sum_probs=72.6
Q ss_pred EEECCCCCEEEEE-eCCCcEEEEecCCceEEeeecccCCCeEEEEEcCCCCEEEEEe-----------------------
Q 009715 285 IAFSTDGTYLATV-GRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGG----------------------- 340 (528)
Q Consensus 285 l~~spdg~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~sg~----------------------- 340 (528)
+=++|||+.+... -..+.+.+.|.++.+...++.- .+...-++++|+|+++++.+
T Consensus 198 ~PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~V-dgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvf 276 (635)
T PRK02888 198 IPLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMV-DGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVF 276 (635)
T ss_pred cccCCCCCEeecccceeEEEEEEECccceEEEEEEe-CCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEE
Confidence 4455677655433 2345677778887776665543 23345567777777776664
Q ss_pred -----------------CCCcEEEEECCC-----CeEEEEeecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCC
Q 009715 341 -----------------EDDLVQVWSMED-----RKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDT 398 (528)
Q Consensus 341 -----------------~dg~v~vwd~~~-----~~~~~~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~ 398 (528)
.++.|.+.|.++ .+.+..+. -......+.++| ||+ ++++++..+.
T Consensus 277 ni~~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSP-------DGk-----ylyVanklS~ 343 (635)
T PRK02888 277 NIARIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSP-------DGK-----YFIANGKLSP 343 (635)
T ss_pred chHHHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEE-CCCCccceEECC-------CCC-----EEEEeCCCCC
Confidence 124577777776 23444443 455677899999 994 5677777899
Q ss_pred eEEEEEccCCe
Q 009715 399 RLLLWDLEMDE 409 (528)
Q Consensus 399 ~i~lwd~~~~~ 409 (528)
+|.+.|+.+.+
T Consensus 344 tVSVIDv~k~k 354 (635)
T PRK02888 344 TVTVIDVRKLD 354 (635)
T ss_pred cEEEEEChhhh
Confidence 99999998755
No 326
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.99 E-value=2.4e-06 Score=85.77 Aligned_cols=197 Identities=15% Similarity=0.223 Sum_probs=126.2
Q ss_pred CCCCeEEEEecCCcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEe----CCceEEEEEcC
Q 009715 166 KDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGH----ADGNLYVYEKS 241 (528)
Q Consensus 166 ~~~~~l~~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~----~dg~v~vwd~~ 241 (528)
.+...+++|..+|.|.+-.++... +..... ...+...+++++|++-..+.||+|- .|-.+.|||+.
T Consensus 68 ~d~cIlavG~atG~I~l~s~r~~h-dSs~E~---------tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~ 137 (783)
T KOG1008|consen 68 NDRCILAVGSATGNISLLSVRHPH-DSSAEV---------TPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDIN 137 (783)
T ss_pred CchhhhhhccccCceEEeecCCcc-ccccee---------cccccccccccccccccHHHHHhhhhhhcccCCccceecc
Confidence 456788999999999999887621 111111 1127789999999997665788774 45679999998
Q ss_pred CCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCCCCEEEEEeCCCcEEEEecCCceEEeeecccC
Q 009715 242 KDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYY 321 (528)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 321 (528)
+.-. . | .... .+. .+-.....+++|-.+.+++.+|.....++++|++.... ....-..
T Consensus 138 s~lt--v--P-ke~~-~fs---------------~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~-~~~svnT 195 (783)
T KOG1008|consen 138 SLLT--V--P-KESP-LFS---------------SSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLD-SVSSVNT 195 (783)
T ss_pred cccC--C--C-cccc-ccc---------------cccccCccccccccCcchhhcccccchhhhhhhhhhhh-hhhhhhh
Confidence 6311 0 0 0000 000 00123455888888899999999889999999983321 1111123
Q ss_pred CCeEEEEEcC-CCCEEEEEeCCCcEEEEEC-CC-CeEEEEeecCC----CCeEEEEEecCCCCCCCCCCccceeEEEEEE
Q 009715 322 GALLCCAWSM-DGKYILTGGEDDLVQVWSM-ED-RKVVAWGEGHN----SWVSGVAFDSYWSQPNSDGTAETVMYRFGSV 394 (528)
Q Consensus 322 ~~v~~l~~sp-~g~~l~sg~~dg~v~vwd~-~~-~~~~~~~~~h~----~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~ 394 (528)
..+..+...| .+.|+++-. |+.|.+||. +. ..++..+.... ..+..++|+|. ..| ++++.
T Consensus 196 k~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPt-----rtg-------lla~l 262 (783)
T KOG1008|consen 196 KYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPT-----RTG-------LLAVL 262 (783)
T ss_pred hhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccC-----Ccc-------hhhhh
Confidence 4566677888 677877765 999999993 33 23344443222 24899999982 134 56666
Q ss_pred eC-CCeEEEEEccC
Q 009715 395 GQ-DTRLLLWDLEM 407 (528)
Q Consensus 395 s~-D~~i~lwd~~~ 407 (528)
.. .++|+++|+..
T Consensus 263 ~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 263 SRDSITIRLYDICV 276 (783)
T ss_pred ccCcceEEEecccc
Confidence 64 47899999863
No 327
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.96 E-value=0.025 Score=59.10 Aligned_cols=196 Identities=11% Similarity=0.050 Sum_probs=104.7
Q ss_pred CCCcEEEEecCCceEEeeecccCCC--------------------e-EEEEEcCCCCEEEEEeCCC--------------
Q 009715 299 RDGYLRVFDYSKEQLICGGKSYYGA--------------------L-LCCAWSMDGKYILTGGEDD-------------- 343 (528)
Q Consensus 299 ~dg~i~vwd~~~~~~~~~~~~~~~~--------------------v-~~l~~sp~g~~l~sg~~dg-------------- 343 (528)
.++.|..+|.++|+.+..+...... + ...++.+.+..++.+..++
T Consensus 173 ~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~ 252 (488)
T cd00216 173 VRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDN 252 (488)
T ss_pred CCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCC
Confidence 4678999999999988765432110 0 1233444456777776655
Q ss_pred ----cEEEEECCCCeEEEEeec--CCCCe----EEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEEE
Q 009715 344 ----LVQVWSMEDRKVVAWGEG--HNSWV----SGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVP 413 (528)
Q Consensus 344 ----~v~vwd~~~~~~~~~~~~--h~~~V----~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~ 413 (528)
.|.-+|.++++.+..++. |..+. ......+. ..-+|. ....++.++.+|.+...|.++++.+..
T Consensus 253 ~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~---~~~~g~---~~~~V~~g~~~G~l~ald~~tG~~~W~ 326 (488)
T cd00216 253 LYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADI---KPKDGK---PVPAIVHAPKNGFFYVLDRTTGKLISA 326 (488)
T ss_pred CceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEec---cccCCC---eeEEEEEECCCceEEEEECCCCcEeeE
Confidence 689999999998877652 22111 00111100 000331 113678888999999999999999887
Q ss_pred eecCCCC----CCCeecCCCCCc-cC-C--ceeeeecCCCCceeeecCCCCceEEeecCC--------CCe--EEEEEeC
Q 009715 414 LRRGPLG----GSPTFSTGSQSA-HW-D--NVCPVGTLQPAPSMRDVPKLSPLVAHRVHT--------EPL--SGLIFTQ 475 (528)
Q Consensus 414 ~~~~~~~----~~~~~s~~~~~~-~~-d--~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~--------~~V--~~l~~s~ 475 (528)
....... ....+....... .. + ........++.+.-.|..+++.+-...... .+. ..++...
T Consensus 327 ~~~~~~~~~~~~~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g 406 (488)
T cd00216 327 RPEVEQPMAYDPGLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAG 406 (488)
T ss_pred eEeeccccccCCceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecC
Confidence 6532000 011111100000 00 0 000001123344455555555544333210 111 1234444
Q ss_pred CeEEEEECCCeEEEEeCCCCccccC
Q 009715 476 ESVLTVCREGHIKIWMRPGVAESQS 500 (528)
Q Consensus 476 d~l~t~s~Dg~i~iW~~~~~~~~~~ 500 (528)
+.|+.++.||.|+.+|..++++...
T Consensus 407 ~~v~~g~~dG~l~ald~~tG~~lW~ 431 (488)
T cd00216 407 NLVFAGAADGYFRAFDATTGKELWK 431 (488)
T ss_pred CeEEEECCCCeEEEEECCCCceeeE
Confidence 6688889999999999988875544
No 328
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.90 E-value=3.8e-06 Score=84.38 Aligned_cols=157 Identities=20% Similarity=0.257 Sum_probs=106.8
Q ss_pred CCceeEEEEeeCCC-cEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEEC
Q 009715 210 NSRCTSVTWVPGGD-GAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFS 288 (528)
Q Consensus 210 ~~~v~~l~~~p~g~-~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 288 (528)
..-+.|+++..+.+ .++++|..+|.|-+-.++..... .......|....++++|+
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS------------------------s~E~tp~~ar~Ct~lAwn 111 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS------------------------SAEVTPGYARPCTSLAWN 111 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccc------------------------cceecccccccccccccc
Confidence 34577888876554 58999999999999988753211 111223345788999999
Q ss_pred C-CCCEEEEEe----CCCcEEEEecCCc--eE--Eeeecc-cCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe-EEE
Q 009715 289 T-DGTYLATVG----RDGYLRVFDYSKE--QL--ICGGKS-YYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRK-VVA 357 (528)
Q Consensus 289 p-dg~~l~s~~----~dg~i~vwd~~~~--~~--~~~~~~-~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~-~~~ 357 (528)
+ |.+.||.|- .|-.+.|||+.++ -+ -..+.+ .......++|-.+.+++++|.....++++|++... ...
T Consensus 112 eLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~ 191 (783)
T KOG1008|consen 112 ELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVS 191 (783)
T ss_pred cccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhh
Confidence 9 778888873 3567999999865 11 111222 33456688999999999999999999999998432 111
Q ss_pred EeecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEc
Q 009715 358 WGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDL 405 (528)
Q Consensus 358 ~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~ 405 (528)
.+ ....|..+..+|+ .+ .++++-. |+.|-+||.
T Consensus 192 sv--nTk~vqG~tVdp~------~~------nY~cs~~-dg~iAiwD~ 224 (783)
T KOG1008|consen 192 SV--NTKYVQGITVDPF------SP------NYFCSNS-DGDIAIWDT 224 (783)
T ss_pred hh--hhhhcccceecCC------CC------Cceeccc-cCceeeccc
Confidence 11 2345666777774 33 3566555 999999993
No 329
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.85 E-value=0.0007 Score=70.54 Aligned_cols=110 Identities=18% Similarity=0.303 Sum_probs=87.1
Q ss_pred eEEEEeeCCCcEEEEEeC----CceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECC
Q 009715 214 TSVTWVPGGDGAFVVGHA----DGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST 289 (528)
Q Consensus 214 ~~l~~~p~g~~~l~tg~~----dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp 289 (528)
+-..|+|..+ +|++++. .|.|.||--.-+......+| -.+++++|+|
T Consensus 19 ti~SWHPseP-lfAVA~fS~er~GSVtIfadtGEPqr~Vt~P----------------------------~hatSLCWHp 69 (1416)
T KOG3617|consen 19 TISSWHPSEP-LFAVASFSPERGGSVTIFADTGEPQRDVTYP----------------------------VHATSLCWHP 69 (1416)
T ss_pred cccccCCCCc-eeEEEEecCCCCceEEEEecCCCCCcccccc----------------------------eehhhhccCh
Confidence 3468999999 8888864 47898886442211122222 2345799999
Q ss_pred CCCEEEEEeCCCcEEEEecCCceEEeeecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 009715 290 DGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMED 352 (528)
Q Consensus 290 dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~ 352 (528)
..-.|+.+-.-|.+.+|...+.+.-.....|..+|..+.|||+|..|+++..-|.|.+|....
T Consensus 70 e~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 70 EEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred HHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeee
Confidence 988999999999999999988777666677999999999999999999999999999998763
No 330
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.85 E-value=0.0076 Score=63.43 Aligned_cols=204 Identities=13% Similarity=0.134 Sum_probs=122.1
Q ss_pred CCCccEEEEeCCCcEEEEeCCCCCCC------C-CCCCeEEEEecCC-----cEEEEEccccccccccceeee-eeeccC
Q 009715 139 DGKGTYIIFNVGDAIFISDLNSQDKD------A-KDGHDLLIGLNSG-----DVYSVSLRQQLQDVGKKLVGA-HHYNKD 205 (528)
Q Consensus 139 ~~~g~~~~~~~~~~i~v~~~~~~~~~------~-~~~~~l~~g~~~G-----~v~iwd~~~~~~~~~~~~~~~-~~~~~~ 205 (528)
+.+|+++.+|..-. .+.++...+.. . ...+.|++-..|+ .|++|+++............. ..+...
T Consensus 42 t~~G~V~~Ln~s~~-~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~ 120 (933)
T KOG2114|consen 42 TADGRVVILNSSFQ-LIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIK 120 (933)
T ss_pred eccccEEEecccce-eeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccC
Confidence 44788888764332 22333322221 2 2335665544443 589999986322211111111 112212
Q ss_pred CcccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEE
Q 009715 206 GSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSI 285 (528)
Q Consensus 206 ~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 285 (528)
......++.+++.+.+-+ .+|+|-.+|.|..+.-+--.. +.-.....+....+|+.+
T Consensus 121 np~~~~p~s~l~Vs~~l~-~Iv~Gf~nG~V~~~~GDi~RD----------------------rgsr~~~~~~~~~pITgL 177 (933)
T KOG2114|consen 121 NPTNPSPASSLAVSEDLK-TIVCGFTNGLVICYKGDILRD----------------------RGSRQDYSHRGKEPITGL 177 (933)
T ss_pred CCCCCCcceEEEEEcccc-EEEEEecCcEEEEEcCcchhc----------------------cccceeeeccCCCCceee
Confidence 334678899999999977 899999999999886431000 000111112235799999
Q ss_pred EECCCCCEEEEEeCCCcEEEEecCCce-EEeeecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEee-cCC
Q 009715 286 AFSTDGTYLATVGRDGYLRVFDYSKEQ-LICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGE-GHN 363 (528)
Q Consensus 286 ~~spdg~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~~~~~~~-~h~ 363 (528)
.|..+++.++.+..-..|.+|.+.... ..+.+..|...++|..+++....+++++ +..+.+||....++-..+. +|.
T Consensus 178 ~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~~g~k 256 (933)
T KOG2114|consen 178 ALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAFEVGEK 256 (933)
T ss_pred EEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeeecCCCe
Confidence 999988873333344679999998433 2445677888899999987665455554 4579999988766655665 565
Q ss_pred CCeE
Q 009715 364 SWVS 367 (528)
Q Consensus 364 ~~V~ 367 (528)
....
T Consensus 257 k~~~ 260 (933)
T KOG2114|consen 257 KEML 260 (933)
T ss_pred EEEE
Confidence 4443
No 331
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.84 E-value=0.0018 Score=70.45 Aligned_cols=153 Identities=14% Similarity=0.217 Sum_probs=101.5
Q ss_pred CCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECC
Q 009715 210 NSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST 289 (528)
Q Consensus 210 ~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp 289 (528)
...|.++.|..+.. -++.+..+|.|.+-|..+... ...-.-...|.+++|+|
T Consensus 68 d~~i~s~~fl~d~~-~i~v~~~~G~iilvd~et~~~---------------------------eivg~vd~GI~aaswS~ 119 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTN-SICVITALGDIILVDPETLEL---------------------------EIVGNVDNGISAASWSP 119 (1265)
T ss_pred CcceEEEEEecccc-eEEEEecCCcEEEEcccccce---------------------------eeeeeccCceEEEeecC
Confidence 36899999999998 788888899999887765211 11111247899999999
Q ss_pred CCCEEEEEeCCCcEEEEecC----CceEE-------------------eeeccc---------------------CCCeE
Q 009715 290 DGTYLATVGRDGYLRVFDYS----KEQLI-------------------CGGKSY---------------------YGALL 325 (528)
Q Consensus 290 dg~~l~s~~~dg~i~vwd~~----~~~~~-------------------~~~~~~---------------------~~~v~ 325 (528)
|+..++..+.++++.+.+.. ..+.+ ..+++. .+.=.
T Consensus 120 Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~ 199 (1265)
T KOG1920|consen 120 DEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKT 199 (1265)
T ss_pred CCcEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCc
Confidence 99999999988888776541 11111 111110 01123
Q ss_pred EEEEcCCCCEEEEE-----eCCCcEEEEECCCCeEEEEeecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEe---CC
Q 009715 326 CCAWSMDGKYILTG-----GEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVG---QD 397 (528)
Q Consensus 326 ~l~~sp~g~~l~sg-----~~dg~v~vwd~~~~~~~~~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s---~D 397 (528)
.|.|--||+++|+. .....|+|||-+ +..-..-......=.+++|-| .| .++++-. .|
T Consensus 200 ~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkP-------sg------s~iA~iq~~~sd 265 (1265)
T KOG1920|consen 200 SISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKP-------SG------SLIAAIQCKTSD 265 (1265)
T ss_pred eEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecC-------CC------CeEeeeeecCCC
Confidence 48999999999983 223799999977 543333333344456789999 88 5666664 45
Q ss_pred CeEEEEE
Q 009715 398 TRLLLWD 404 (528)
Q Consensus 398 ~~i~lwd 404 (528)
+.|.+|.
T Consensus 266 ~~IvffE 272 (1265)
T KOG1920|consen 266 SDIVFFE 272 (1265)
T ss_pred CcEEEEe
Confidence 5677776
No 332
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.84 E-value=0.0034 Score=65.10 Aligned_cols=104 Identities=22% Similarity=0.209 Sum_probs=74.7
Q ss_pred ECCCCCEEEEEeCCCcEEEEecCC----c-eEEeeecccCCCeEEEEEcCCCCEEEEEeC-CCcEEEEECCCCeE-----
Q 009715 287 FSTDGTYLATVGRDGYLRVFDYSK----E-QLICGGKSYYGALLCCAWSMDGKYILTGGE-DDLVQVWSMEDRKV----- 355 (528)
Q Consensus 287 ~spdg~~l~s~~~dg~i~vwd~~~----~-~~~~~~~~~~~~v~~l~~sp~g~~l~sg~~-dg~v~vwd~~~~~~----- 355 (528)
+.++|++... .++.|.+.|..+ + +.+..+. -......++++|||+++++++. +..|.|+|+.+.+.
T Consensus 284 ~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~ 360 (635)
T PRK02888 284 AVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGK 360 (635)
T ss_pred hhhCCCEEEE--CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhcc
Confidence 3457877665 356899999998 3 4444333 4556778999999998887655 89999999987542
Q ss_pred -------EEEeecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccC
Q 009715 356 -------VAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEM 407 (528)
Q Consensus 356 -------~~~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~ 407 (528)
+...+- ...-...+|++ +| +.+.|--.|..|..||+..
T Consensus 361 ~~~~~~vvaevev-GlGPLHTaFDg-------~G------~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 361 IKPRDAVVAEPEL-GLGPLHTAFDG-------RG------NAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CCccceEEEeecc-CCCcceEEECC-------CC------CEEEeEeecceeEEEehHH
Confidence 333332 22334578888 88 6777888899999999886
No 333
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=0.0011 Score=63.43 Aligned_cols=244 Identities=17% Similarity=0.177 Sum_probs=119.9
Q ss_pred cCCCCCCCccccCCcccCCcccCCCCCCcceeeeCCCccEEEEeCCCcEEE--EeCCCCCCC----CCCCCeEEEEecCC
Q 009715 105 FGGGNGGSKSISGSSRIGSLGASSSSTSMTNTNFDGKGTYIIFNVGDAIFI--SDLNSQDKD----AKDGHDLLIGLNSG 178 (528)
Q Consensus 105 f~gh~~~v~~v~~s~~~~~~~~s~s~~s~~~~~~~~~g~~~~~~~~~~i~v--~~~~~~~~~----~~~~~~l~~g~~~G 178 (528)
..+|...++.++|+|...+|+...+. +..+.+++......+ ++.....+. ..+.+.+.+|..+|
T Consensus 189 lp~~g~~IrdlafSp~~~GLl~~asl----------~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl~nG 258 (463)
T KOG1645|consen 189 LPGEGSFIRDLAFSPFNEGLLGLASL----------GNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGLQNG 258 (463)
T ss_pred ccccchhhhhhccCccccceeeeecc----------CceEEEEecccceeeeheeccCCceeeeeccCCcceeEEeccCc
Confidence 45777779999999955555555553 233333333332211 111111111 34578999999999
Q ss_pred cEEEEEccccccccccceeeeeeeccCCcccCCceeEE------EEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCcccc
Q 009715 179 DVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSV------TWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPV 252 (528)
Q Consensus 179 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l------~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~ 252 (528)
.|++||+++.. .+...++.. ....+|..+ +..+-|. +|+....+ +..|++............
T Consensus 259 ~VlvyD~R~~~-~~~~e~~a~--------~t~~pv~~i~~~~~n~~f~~gg-lLv~~lt~--l~f~ei~~s~~~~p~vle 326 (463)
T KOG1645|consen 259 MVLVYDMRQPE-GPLMELVAN--------VTINPVHKIAPVQPNKIFTSGG-LLVFALTV--LQFYEIVFSAECLPCVLE 326 (463)
T ss_pred eEEEEEccCCC-chHhhhhhh--------hccCcceeecccCccccccccc-eEEeeehh--hhhhhhhccccCCCcccc
Confidence 99999999721 111111110 012233333 3334444 55555544 556666432211111000
Q ss_pred ccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCCCCEEEEEeCC-C------cE-EEEecCCceEEeeec-ccCC-
Q 009715 253 IKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRD-G------YL-RVFDYSKEQLICGGK-SYYG- 322 (528)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~~~d-g------~i-~vwd~~~~~~~~~~~-~~~~- 322 (528)
.+ ..+...++++.+-.+.++..... . .+ .-.|..+|..++..+ .+.+
T Consensus 327 le-----------------------~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs 383 (463)
T KOG1645|consen 327 LE-----------------------PPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGS 383 (463)
T ss_pred cC-----------------------CCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCC
Confidence 00 01444555555533333333221 0 01 112333444443222 1211
Q ss_pred Ce------EEEEEcCCCCEEE-EEeCCCcEEEEECCCCeEEEEeecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEe
Q 009715 323 AL------LCCAWSMDGKYIL-TGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVG 395 (528)
Q Consensus 323 ~v------~~l~~sp~g~~l~-sg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s 395 (528)
.- ..+.-.++..+++ ++...+.+.+||..+.+.++++. -..+|.+++.... +|. .+|+.-
T Consensus 384 ~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~evvQ~l~-~~epv~Dicp~~~------n~~-----syLa~L- 450 (463)
T KOG1645|consen 384 KQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSFEVVQTLA-LSEPVLDICPNDT------NGS-----SYLALL- 450 (463)
T ss_pred cccccccccceeccccccEEEEecCCcceeEEeccchhheeeecc-cCcceeecceeec------CCc-----chhhhe-
Confidence 00 1122234555555 45567889999999999998887 5578888876541 231 244443
Q ss_pred CCCeEEEEEcc
Q 009715 396 QDTRLLLWDLE 406 (528)
Q Consensus 396 ~D~~i~lwd~~ 406 (528)
.|..++||...
T Consensus 451 Td~~v~Iyk~e 461 (463)
T KOG1645|consen 451 TDDRVHIYKNE 461 (463)
T ss_pred ecceEEEEecC
Confidence 45677777543
No 334
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.80 E-value=0.028 Score=52.46 Aligned_cols=165 Identities=16% Similarity=0.204 Sum_probs=99.5
Q ss_pred CceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeec-CCCeEEEEECC
Q 009715 211 SRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHIC-QGSINSIAFST 289 (528)
Q Consensus 211 ~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~sp 289 (528)
..+..|+|+|+...++++....+.|..++.+ +... +.+... .+..-.|++..
T Consensus 22 ~e~SGLTy~pd~~tLfaV~d~~~~i~els~~--G~vl-------------------------r~i~l~g~~D~EgI~y~g 74 (248)
T PF06977_consen 22 DELSGLTYNPDTGTLFAVQDEPGEIYELSLD--GKVL-------------------------RRIPLDGFGDYEGITYLG 74 (248)
T ss_dssp S-EEEEEEETTTTEEEEEETTTTEEEEEETT----EE-------------------------EEEE-SS-SSEEEEEE-S
T ss_pred CCccccEEcCCCCeEEEEECCCCEEEEEcCC--CCEE-------------------------EEEeCCCCCCceeEEEEC
Confidence 3599999999877688888888898877764 3322 222211 25577899988
Q ss_pred CCCEEEEEeCCCcEEEEecCCce------EEeee-----cccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC---CeE
Q 009715 290 DGTYLATVGRDGYLRVFDYSKEQ------LICGG-----KSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMED---RKV 355 (528)
Q Consensus 290 dg~~l~s~~~dg~i~vwd~~~~~------~~~~~-----~~~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~---~~~ 355 (528)
++.++++.-.++.+.++++.... ....+ ..+...+..|+|+|.++.|+.+-+..-..||.++. ...
T Consensus 75 ~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~ 154 (248)
T PF06977_consen 75 NGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFD 154 (248)
T ss_dssp TTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS-
T ss_pred CCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccc
Confidence 88777776678999999883211 11111 12345689999999888888887877777777654 211
Q ss_pred EEE--e------ecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEEEee
Q 009715 356 VAW--G------EGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLR 415 (528)
Q Consensus 356 ~~~--~------~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~ 415 (528)
+.. . ......+.+++++|. .| .+++-...+..|..+| ..|+.+..+.
T Consensus 155 ~~~~~~~~~~~~~~~~~d~S~l~~~p~------t~------~lliLS~es~~l~~~d-~~G~~~~~~~ 209 (248)
T PF06977_consen 155 LFVSDDQDLDDDKLFVRDLSGLSYDPR------TG------HLLILSDESRLLLELD-RQGRVVSSLS 209 (248)
T ss_dssp -EEEE-HHHH-HT--SS---EEEEETT------TT------EEEEEETTTTEEEEE--TT--EEEEEE
T ss_pred eeeccccccccccceeccccceEEcCC------CC------eEEEEECCCCeEEEEC-CCCCEEEEEE
Confidence 111 1 123456889999982 45 6777788889999999 6676655443
No 335
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.70 E-value=0.019 Score=55.27 Aligned_cols=223 Identities=19% Similarity=0.175 Sum_probs=121.3
Q ss_pred EEEEeCCCcEEEEeCCCCCC-C------------CCCCCeEEEEec--CCcEEEEEccccccccccceeeeeeeccCCcc
Q 009715 144 YIIFNVGDAIFISDLNSQDK-D------------AKDGHDLLIGLN--SGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSV 208 (528)
Q Consensus 144 ~~~~~~~~~i~v~~~~~~~~-~------------~~~~~~l~~g~~--~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 208 (528)
+-+|+...-....++.-+.+ . +.|++++++..- .-.|.+.|+..+ +.+...
T Consensus 69 v~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~------kvv~ei-------- 134 (342)
T PF06433_consen 69 VEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAK------KVVGEI-------- 134 (342)
T ss_dssp EEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTT------EEEEEE--------
T ss_pred EEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCC------ceeeee--------
Confidence 33455555555555554443 1 556666665443 235666666541 121111
Q ss_pred cCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCe-EEEEE
Q 009715 209 NNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSI-NSIAF 287 (528)
Q Consensus 209 h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v-~~l~~ 287 (528)
.... |.-.-|.++.-|.+-|.||.+.-..+..+++.......... .-..++ ..-++
T Consensus 135 ~~PG--C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~---------------------~~~dp~f~~~~~ 191 (342)
T PF06433_consen 135 DTPG--CWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFD---------------------PDDDPLFEHPAY 191 (342)
T ss_dssp EGTS--EEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESS---------------------TTTS-B-S--EE
T ss_pred cCCC--EEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccC---------------------CCCcccccccce
Confidence 1112 33334555447999999999999999876654321111100 001111 12233
Q ss_pred CCCCCEEEEEeCCCcEEEEecCCceEE--eeecc----------cCCCeEEEEEcCCCCEEEEEeC---CC-------cE
Q 009715 288 STDGTYLATVGRDGYLRVFDYSKEQLI--CGGKS----------YYGALLCCAWSMDGKYILTGGE---DD-------LV 345 (528)
Q Consensus 288 spdg~~l~s~~~dg~i~vwd~~~~~~~--~~~~~----------~~~~v~~l~~sp~g~~l~sg~~---dg-------~v 345 (528)
...+..++..+.+|.|+-.|+...... ..... -.+.-.-+++++....|.+-.. ++ .|
T Consensus 192 ~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteV 271 (342)
T PF06433_consen 192 SRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEV 271 (342)
T ss_dssp ETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEE
T ss_pred ECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEE
Confidence 444455555667777777777644321 11110 0133455788876655554321 22 48
Q ss_pred EEEECCCCeEEEEeecCCCCeEEEEEecCCCCCCCCCCccceeEEEE-EEeCCCeEEEEEccCCeEEEEeec
Q 009715 346 QVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFG-SVGQDTRLLLWDLEMDEIVVPLRR 416 (528)
Q Consensus 346 ~vwd~~~~~~~~~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~-s~s~D~~i~lwd~~~~~~~~~~~~ 416 (528)
.+||+.+++.+.++.. ..++.+|+.+. |.+ .+|+ ....++.|.+||..+++.+..+..
T Consensus 272 Wv~D~~t~krv~Ri~l-~~~~~Si~Vsq-------d~~-----P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 272 WVYDLKTHKRVARIPL-EHPIDSIAVSQ-------DDK-----PLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp EEEETTTTEEEEEEEE-EEEESEEEEES-------SSS------EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred EEEECCCCeEEEEEeC-CCccceEEEcc-------CCC-----cEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 8889999999998872 34577899887 542 3454 445689999999999999988875
No 336
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.66 E-value=0.019 Score=56.38 Aligned_cols=269 Identities=14% Similarity=0.043 Sum_probs=119.9
Q ss_pred eeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCCCC
Q 009715 213 CTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGT 292 (528)
Q Consensus 213 v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spdg~ 292 (528)
.+.=+|.++|+.+|+.+..||.-.+|-++.......++.... ........++|+.+
T Consensus 38 F~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~------------------------g~~~~g~~~s~~~~ 93 (386)
T PF14583_consen 38 FYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGP------------------------GDNTFGGFLSPDDR 93 (386)
T ss_dssp TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-------------------------B-TTT-EE-TTSS
T ss_pred ecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCC------------------------CCCccceEEecCCC
Confidence 334467889986777777777655554443222111111100 01122355678888
Q ss_pred EEEEEeCCCcEEEEecCCceEEeeecccCCCeEEEEEc--CCCCEEEEEe---CC-------------------CcEEEE
Q 009715 293 YLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWS--MDGKYILTGG---ED-------------------DLVQVW 348 (528)
Q Consensus 293 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s--p~g~~l~sg~---~d-------------------g~v~vw 348 (528)
.++.......|+-.|+++.+....+......+-...|. .|+..++-.- .| ..|.-.
T Consensus 94 ~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~i 173 (386)
T PF14583_consen 94 ALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTI 173 (386)
T ss_dssp EEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEE
T ss_pred eEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEE
Confidence 88777667789999999887765555445544445553 4566544321 11 125556
Q ss_pred ECCCCeEEEEeecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeC---CC-eEEEEEccCC-eEEEEeecCCCC---
Q 009715 349 SMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQ---DT-RLLLWDLEMD-EIVVPLRRGPLG--- 420 (528)
Q Consensus 349 d~~~~~~~~~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~---D~-~i~lwd~~~~-~~~~~~~~~~~~--- 420 (528)
|+.+|+....+. -..++.-+.|+|. |. .+|+-|-+ |. .-|||-+++. .....+......
T Consensus 174 dl~tG~~~~v~~-~~~wlgH~~fsP~------dp------~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~ 240 (386)
T PF14583_consen 174 DLKTGERKVVFE-DTDWLGHVQFSPT------DP------TLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESV 240 (386)
T ss_dssp ETTT--EEEEEE-ESS-EEEEEEETT------EE------EEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEE
T ss_pred ECCCCceeEEEe-cCccccCcccCCC------CC------CEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCccc
Confidence 777777554444 6778999999993 44 45555532 22 1366765543 233333322221
Q ss_pred CCCeecCCCCCccCCceeeeecCCCCceeeecCCCCceEEeecCCCCeEEEEEeCCe-EEEE-ECCC-------------
Q 009715 421 GSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES-VLTV-CREG------------- 485 (528)
Q Consensus 421 ~~~~~s~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~~s~d~-l~t~-s~Dg------------- 485 (528)
.--.|.++|....++.. .-+..+..+..++..+.+....... .....+.-++|+ |++| +.|.
T Consensus 241 gHEfw~~DG~~i~y~~~-~~~~~~~~i~~~d~~t~~~~~~~~~--p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~ 317 (386)
T PF14583_consen 241 GHEFWVPDGSTIWYDSY-TPGGQDFWIAGYDPDTGERRRLMEM--PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIE 317 (386)
T ss_dssp EEEEE-TTSS-EEEEEE-ETTT--EEEEEE-TTT--EEEEEEE---SEEEEEE-TTSSEEEEEE----------------
T ss_pred ccccccCCCCEEEEEee-cCCCCceEEEeeCCCCCCceEEEeC--CceeeeEEcCCCCEEEecCCCCCccccccccceec
Confidence 11235566643333221 1223333455556665544322221 233344455665 5544 3331
Q ss_pred ---eEEEEeCCCCccc-cCC-------------CccceEEEccCCceEEEeee
Q 009715 486 ---HIKIWMRPGVAES-QSS-------------SSETVLSTSSKDKPLLSSKV 521 (528)
Q Consensus 486 ---~i~iW~~~~~~~~-~~~-------------~~~~vl~~spd~~~l~s~~~ 521 (528)
.|+++++..+... ... ....-..||||||+|+..+.
T Consensus 318 ~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd 370 (386)
T PF14583_consen 318 NDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSD 370 (386)
T ss_dssp ---EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-
T ss_pred CCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECC
Confidence 5667777665422 111 12334999999999886543
No 337
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=0.00026 Score=71.53 Aligned_cols=93 Identities=17% Similarity=0.141 Sum_probs=78.3
Q ss_pred CCeEEEEECCCCCEEEEEeCCCcEEEEecCCceEEeeecccCCCeE-EEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEE
Q 009715 280 GSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALL-CCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAW 358 (528)
Q Consensus 280 ~~v~~l~~spdg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~-~l~~sp~g~~l~sg~~dg~v~vwd~~~~~~~~~ 358 (528)
..|..+.|+|.-..||.+..+|.|.+..+. .+.+..+.-+...+. +++|.|||++||+|-.||+|++.|++++..+..
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~ 99 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS 99 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence 568889999998999999999999999998 777777776666676 999999999999999999999999999877665
Q ss_pred ee-cCCCCeEEEEEec
Q 009715 359 GE-GHNSWVSGVAFDS 373 (528)
Q Consensus 359 ~~-~h~~~V~~v~f~p 373 (528)
.. .-...|.++-|++
T Consensus 100 ~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 100 FLFSVETDISKGIWDR 115 (665)
T ss_pred cccccccchheeeccc
Confidence 32 2456677777764
No 338
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.58 E-value=0.14 Score=53.59 Aligned_cols=292 Identities=14% Similarity=0.115 Sum_probs=149.5
Q ss_pred eeCCCccEEEEeCCCcEEEEeCCCCCC--C----------CCCC-CeEEEEecCCcEEEEEccccccccccceeeeeeec
Q 009715 137 NFDGKGTYIIFNVGDAIFISDLNSQDK--D----------AKDG-HDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYN 203 (528)
Q Consensus 137 ~~~~~g~~~~~~~~~~i~v~~~~~~~~--~----------~~~~-~~l~~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~ 203 (528)
..+.++.+.+++......+|..+.... . ...+ ..++++..+|.|+.+|.++.. .+ -.+.
T Consensus 66 ~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~~g~v~AlD~~TG~-----~~---W~~~ 137 (488)
T cd00216 66 FTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTFDGRLVALDAETGK-----QV---WKFG 137 (488)
T ss_pred EeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecCCCeEEEEECCCCC-----Ee---eeec
Confidence 334467888888766666666544322 0 1123 788899999999999987621 11 0011
Q ss_pred cCCcc-cCCcee-EEEEeeCCCcEEEEEe---------CCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCe
Q 009715 204 KDGSV-NNSRCT-SVTWVPGGDGAFVVGH---------ADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPI 272 (528)
Q Consensus 204 ~~~~~-h~~~v~-~l~~~p~g~~~l~tg~---------~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (528)
..... ....+. ...+. ++ +++.++ .+|.|..+|..++ +..-.+......... .. .....
T Consensus 138 ~~~~~~~~~~i~ssP~v~-~~--~v~vg~~~~~~~~~~~~g~v~alD~~TG-~~~W~~~~~~~~~~~---~~---~~~~~ 207 (488)
T cd00216 138 NNDQVPPGYTMTGAPTIV-KK--LVIIGSSGAEFFACGVRGALRAYDVETG-KLLWRFYTTEPDPNA---FP---TWGPD 207 (488)
T ss_pred CCCCcCcceEecCCCEEE-CC--EEEEeccccccccCCCCcEEEEEECCCC-ceeeEeeccCCCcCC---CC---CCCCC
Confidence 00000 000011 11121 22 344443 4678888888763 222222211000000 00 00000
Q ss_pred EEEeecC-CCe-EEEEECCCCCEEEEEeCCC------------------cEEEEecCCceEEeeecccCCCe------EE
Q 009715 273 ARWHICQ-GSI-NSIAFSTDGTYLATVGRDG------------------YLRVFDYSKEQLICGGKSYYGAL------LC 326 (528)
Q Consensus 273 ~~~~~h~-~~v-~~l~~spdg~~l~s~~~dg------------------~i~vwd~~~~~~~~~~~~~~~~v------~~ 326 (528)
..+..+. ..| ...++.+.+..++.++.++ .|.-+|+++|+.+..+..-.... ..
T Consensus 208 ~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~ 287 (488)
T cd00216 208 RQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQ 287 (488)
T ss_pred cceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCC
Confidence 0000111 111 1345555566777776665 69999999999887754211100 00
Q ss_pred EEEc----CCCC---EEEEEeCCCcEEEEECCCCeEEEEeecCCCCeEEEEEecCCCCCCCCCCccceeEEEEE------
Q 009715 327 CAWS----MDGK---YILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGS------ 393 (528)
Q Consensus 327 l~~s----p~g~---~l~sg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s------ 393 (528)
..+. -++. .++.++.+|.+..+|.++|+.+...... ...++.+| + ..++.
T Consensus 288 p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~~~~~~--------~------~vyv~~~~~~~ 350 (488)
T cd00216 288 PSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV---EQPMAYDP--------G------LVYLGAFHIPL 350 (488)
T ss_pred CeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee---ccccccCC--------c------eEEEccccccc
Confidence 0111 1343 5778888999999999999988765411 01122222 1 11111
Q ss_pred -----------EeCCCeEEEEEccCCeEEEEeecCCCCCCCee---cCCCCCccCCceeeeecCCCCceeeecCCCCceE
Q 009715 394 -----------VGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTF---STGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLV 459 (528)
Q Consensus 394 -----------~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~---s~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~ 459 (528)
...++.|.-.|+.+++.+.............+ ...+........+.+++.++.+..+|..+++.+-
T Consensus 351 ~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW 430 (488)
T cd00216 351 GLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGKELW 430 (488)
T ss_pred cCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCCceee
Confidence 12467888889999998887765311100000 0011112233556777888999999999988887
Q ss_pred Eeec
Q 009715 460 AHRV 463 (528)
Q Consensus 460 ~~~~ 463 (528)
.++.
T Consensus 431 ~~~~ 434 (488)
T cd00216 431 KFRT 434 (488)
T ss_pred EEEC
Confidence 7664
No 339
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.55 E-value=0.043 Score=55.16 Aligned_cols=179 Identities=15% Similarity=0.128 Sum_probs=94.8
Q ss_pred cCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccc-cccccceeEEeccCCCCCCCeEEEeecCCCeEEEEE
Q 009715 209 NNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFP-VIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAF 287 (528)
Q Consensus 209 h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 287 (528)
..++|++++.+.-| +++.|+.+|.+.|.|++... . .+. ...+ ...-......|+++.|
T Consensus 85 ~~g~vtal~~S~iG--Fvaigy~~G~l~viD~RGPa--v-I~~~~i~~----------------~~~~~~~~~~vt~ieF 143 (395)
T PF08596_consen 85 KQGPVTALKNSDIG--FVAIGYESGSLVVIDLRGPA--V-IYNENIRE----------------SFLSKSSSSYVTSIEF 143 (395)
T ss_dssp -S-SEEEEEE-BTS--EEEEEETTSEEEEEETTTTE--E-EEEEEGGG------------------T-SS----EEEEEE
T ss_pred cCCcEeEEecCCCc--EEEEEecCCcEEEEECCCCe--E-Eeeccccc----------------cccccccccCeeEEEE
Confidence 57899999998665 89999999999999997421 0 000 0000 0000011245777877
Q ss_pred CC-----CC---CEEEEEeCCCcEEEEecC--C-ce----EEeeecccCCCeEEEE-EcCC-----------------C-
Q 009715 288 ST-----DG---TYLATVGRDGYLRVFDYS--K-EQ----LICGGKSYYGALLCCA-WSMD-----------------G- 333 (528)
Q Consensus 288 sp-----dg---~~l~s~~~dg~i~vwd~~--~-~~----~~~~~~~~~~~v~~l~-~sp~-----------------g- 333 (528)
.- |+ -.|++|...|.+.+|.+. . +. .......+.++|..+. ++.+ +
T Consensus 144 ~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~ 223 (395)
T PF08596_consen 144 SVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGI 223 (395)
T ss_dssp EEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT-
T ss_pred EEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCC
Confidence 62 33 378889999999999874 1 21 1122223556665554 3211 1
Q ss_pred --CEEEEEeCCCcEEEEECCCCeEEEEeecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEE
Q 009715 334 --KYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIV 411 (528)
Q Consensus 334 --~~l~sg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~ 411 (528)
+-+++...+..++|+..-+.+..+......-.+..+.+-++-. ...+ ..|+.-..+|.|+++.+..-+.+
T Consensus 224 ~i~g~vVvvSe~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~--~~~~------~~Lv~l~~~G~i~i~SLP~Lkei 295 (395)
T PF08596_consen 224 SIPGYVVVVSESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTIS--RNGG------YCLVCLFNNGSIRIYSLPSLKEI 295 (395)
T ss_dssp ---EEEEEE-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE---EEEE------EEEEEEETTSEEEEEETTT--EE
T ss_pred CcCcEEEEEcccceEEEeCCCCcccceeeccccccceEEEEeecc--cCCc------eEEEEEECCCcEEEEECCCchHh
Confidence 1234444467899999988777655543323344455532000 0023 67888889999999999998888
Q ss_pred EEeec
Q 009715 412 VPLRR 416 (528)
Q Consensus 412 ~~~~~ 416 (528)
..+..
T Consensus 296 ~~~~l 300 (395)
T PF08596_consen 296 KSVSL 300 (395)
T ss_dssp EEEE-
T ss_pred hcccC
Confidence 77765
No 340
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.54 E-value=0.0077 Score=61.08 Aligned_cols=178 Identities=21% Similarity=0.260 Sum_probs=102.5
Q ss_pred CCceeEEEEeeCCCcEEEEEeCC---ceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEE
Q 009715 210 NSRCTSVTWVPGGDGAFVVGHAD---GNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIA 286 (528)
Q Consensus 210 ~~~v~~l~~~p~g~~~l~tg~~d---g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 286 (528)
...+..-+|+|+++.+....-.. ..++++++..+.... +..+ .+.-...+
T Consensus 192 ~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~------------------------i~~~---~g~~~~P~ 244 (425)
T COG0823 192 GSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPV------------------------ILNF---NGNNGAPA 244 (425)
T ss_pred CcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccce------------------------eecc---CCccCCcc
Confidence 34566778999998433332222 358888887643211 1111 13334678
Q ss_pred ECCCCCEEEEEe-CCC--cEEEEecCCceEEeeecccCCCeEEEEEcCCCCEEEEEeC-CC--cEEEEECCCCeEEEEee
Q 009715 287 FSTDGTYLATVG-RDG--YLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGE-DD--LVQVWSMEDRKVVAWGE 360 (528)
Q Consensus 287 ~spdg~~l~s~~-~dg--~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~sg~~-dg--~v~vwd~~~~~~~~~~~ 360 (528)
|+|||++|+.+. .|| .|.++|+..++... +....+.-..-.|+|||++|+..+. .| .|.++|.+.+.. ..+.
T Consensus 245 fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT 322 (425)
T COG0823 245 FSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLT 322 (425)
T ss_pred CCCCCCEEEEEECCCCCccEEEEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEee
Confidence 999999887764 455 46777887666433 4433343346689999998886554 44 456666665544 3333
Q ss_pred cCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeC-CCe--EEEEEccCCeEEEEeecCCCCCCCeecCCC
Q 009715 361 GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQ-DTR--LLLWDLEMDEIVVPLRRGPLGGSPTFSTGS 429 (528)
Q Consensus 361 ~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~-D~~--i~lwd~~~~~~~~~~~~~~~~~~~~~s~~~ 429 (528)
.....-..-.|+| || .+|+..+. ++. |.+.|+.++.....+..........+.+++
T Consensus 323 ~~~~~~~~p~~Sp-------dG------~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng 381 (425)
T COG0823 323 FSGGGNSNPVWSP-------DG------DKIVFESSSGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNG 381 (425)
T ss_pred ccCCCCcCccCCC-------CC------CEEEEEeccCCceeeEEeccCCCCcEEEccccccCCCCCcCCCC
Confidence 2222222566777 99 45555553 344 666777666545555444444444444444
No 341
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.42 E-value=0.045 Score=55.81 Aligned_cols=155 Identities=15% Similarity=0.201 Sum_probs=85.6
Q ss_pred CCCCCeEEEEecCCcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCC
Q 009715 165 AKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDG 244 (528)
Q Consensus 165 ~~~~~~l~~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~ 244 (528)
+|+++.+++ ..+|...++.... ... ...+.....+|.+.+ .+|+-....+|.|+.--++.
T Consensus 41 npngr~v~V-~g~geY~iyt~~~--------~r~---------k~~G~g~~~vw~~~n--~yAv~~~~~~I~I~kn~~~~ 100 (443)
T PF04053_consen 41 NPNGRFVLV-CGDGEYEIYTALA--------WRN---------KAFGSGLSFVWSSRN--RYAVLESSSTIKIYKNFKNE 100 (443)
T ss_dssp -TTSSEEEE-EETTEEEEEETTT--------TEE---------EEEEE-SEEEE-TSS--EEEEE-TTS-EEEEETTEE-
T ss_pred CCCCCEEEE-EcCCEEEEEEccC--------Ccc---------cccCceeEEEEecCc--cEEEEECCCeEEEEEcCccc
Confidence 789999988 6777888887322 000 033456778999855 48887778899997432211
Q ss_pred CCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCCCCEEEEEeCCCcEEEEecCCceEEeeecccCCCe
Q 009715 245 AGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGAL 324 (528)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v 324 (528)
....++. ...+..|-. |.+|...+.+ .|.+||..+++.+..+.. .+|
T Consensus 101 -~~k~i~~--------------------------~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v--~~v 147 (443)
T PF04053_consen 101 -VVKSIKL--------------------------PFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDV--SAV 147 (443)
T ss_dssp -TT-------------------------------SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-
T ss_pred -cceEEcC--------------------------CcccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEec--CCC
Confidence 1001110 012223322 7777777654 899999999999998863 348
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCC-----------eEEEEeecCCCCeEEEEEec
Q 009715 325 LCCAWSMDGKYILTGGEDDLVQVWSMEDR-----------KVVAWGEGHNSWVSGVAFDS 373 (528)
Q Consensus 325 ~~l~~sp~g~~l~sg~~dg~v~vwd~~~~-----------~~~~~~~~h~~~V~~v~f~p 373 (528)
..+.|++++.+++..+.+ .+.|++.+.. .....+......|.+.+|..
T Consensus 148 k~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~ 206 (443)
T PF04053_consen 148 KYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVE 206 (443)
T ss_dssp EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEET
T ss_pred cEEEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEc
Confidence 999999999999988755 6777775433 02233322256788888864
No 342
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.40 E-value=0.1 Score=47.76 Aligned_cols=118 Identities=13% Similarity=0.045 Sum_probs=81.3
Q ss_pred EEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCCCCEEE
Q 009715 216 VTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLA 295 (528)
Q Consensus 216 l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~ 295 (528)
+...++.+.+++.|+..+.+.--|..++....... ....|.+-+.- -|++++
T Consensus 16 LVV~~dskT~v~igSHs~~~~avd~~sG~~~We~i---------------------------lg~RiE~sa~v-vgdfVV 67 (354)
T KOG4649|consen 16 LVVCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAI---------------------------LGVRIECSAIV-VGDFVV 67 (354)
T ss_pred EEEecCCceEEEEecCCceEEEecCCCCcEEeehh---------------------------hCceeeeeeEE-ECCEEE
Confidence 34455656588888888888888876532111000 01222221111 377899
Q ss_pred EEeCCCcEEEEecCCceEEeeecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeec
Q 009715 296 TVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEG 361 (528)
Q Consensus 296 s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~~~~~~~~ 361 (528)
.|...|.+++.+.++|+.+..+.....--..-...+++.++..|+.|+..+..|.++..++...+.
T Consensus 68 ~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskc 133 (354)
T KOG4649|consen 68 LGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKC 133 (354)
T ss_pred EEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEeccc
Confidence 999999999999999988777654322112234577899999999999999999999999888763
No 343
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.40 E-value=0.0073 Score=61.27 Aligned_cols=169 Identities=16% Similarity=0.184 Sum_probs=96.0
Q ss_pred CCCCCeEEE-EecC---CcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeCCceEEEEEc
Q 009715 165 AKDGHDLLI-GLNS---GDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEK 240 (528)
Q Consensus 165 ~~~~~~l~~-g~~~---G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~ 240 (528)
++++..++. .... ..++++|+.... ...... -.+.-..-+|+|||+.++++...||...||-+
T Consensus 201 s~~~~~~~y~~f~~~~~~~i~~~~l~~g~---~~~i~~----------~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~ 267 (425)
T COG0823 201 SPDGKKLAYVSFELGGCPRIYYLDLNTGK---RPVILN----------FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLM 267 (425)
T ss_pred CcCCCceEEEEEecCCCceEEEEeccCCc---cceeec----------cCCccCCccCCCCCCEEEEEECCCCCccEEEE
Confidence 566666533 2222 358899987621 111111 12233456999999977778888887666655
Q ss_pred CCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCCCCEEEEEeCC-C--cEEEEecCCceEEeee
Q 009715 241 SKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRD-G--YLRVFDYSKEQLICGG 317 (528)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~~~d-g--~i~vwd~~~~~~~~~~ 317 (528)
+..+..... +..-.+.-..-.|+|||++|+..+.. | .|.++|++.++... +
T Consensus 268 dl~~~~~~~-------------------------Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~r-i 321 (425)
T COG0823 268 DLDGKNLPR-------------------------LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTR-L 321 (425)
T ss_pred cCCCCccee-------------------------cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeE-e
Confidence 443322111 11111222256899999998887643 3 57777777665432 2
Q ss_pred cccCCCeEEEEEcCCCCEEEEEeC-CCc--EEEEECCCCeEEEEeecCCCCeEEEEEec
Q 009715 318 KSYYGALLCCAWSMDGKYILTGGE-DDL--VQVWSMEDRKVVAWGEGHNSWVSGVAFDS 373 (528)
Q Consensus 318 ~~~~~~v~~l~~sp~g~~l~sg~~-dg~--v~vwd~~~~~~~~~~~~h~~~V~~v~f~p 373 (528)
....+.-..-.|+|||++|+..+. +|. |.+.|+.++..++.+. +......-.|.|
T Consensus 322 T~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ 379 (425)
T COG0823 322 TFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILT-STYLNESPSWAP 379 (425)
T ss_pred eccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEcc-ccccCCCCCcCC
Confidence 222222236789999999987764 343 6666666655444433 333344445555
No 344
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=0.00077 Score=68.28 Aligned_cols=93 Identities=19% Similarity=0.249 Sum_probs=73.9
Q ss_pred CceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeE-EEEECC
Q 009715 211 SRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSIN-SIAFST 289 (528)
Q Consensus 211 ~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~l~~sp 289 (528)
..|.-+.|+|.-+ ++|.+..+|.|.+..+.. +.+..+..|...++ +++|.|
T Consensus 21 ~~i~~~ewnP~~d-LiA~~t~~gelli~R~n~---------------------------qRlwtip~p~~~v~~sL~W~~ 72 (665)
T KOG4640|consen 21 INIKRIEWNPKMD-LIATRTEKGELLIHRLNW---------------------------QRLWTIPIPGENVTASLCWRP 72 (665)
T ss_pred cceEEEEEcCccc-hhheeccCCcEEEEEecc---------------------------ceeEeccCCCCccceeeeecC
Confidence 4577899999999 999999999998887762 23333343445555 999999
Q ss_pred CCCEEEEEeCCCcEEEEecCCceEEeee-cccCCCeEEEEEcC
Q 009715 290 DGTYLATVGRDGYLRVFDYSKEQLICGG-KSYYGALLCCAWSM 331 (528)
Q Consensus 290 dg~~l~s~~~dg~i~vwd~~~~~~~~~~-~~~~~~v~~l~~sp 331 (528)
||+.||+|-.||+|++.|+.++..+... ......|.++-|.+
T Consensus 73 DGkllaVg~kdG~I~L~Dve~~~~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 73 DGKLLAVGFKDGTIRLHDVEKGGRLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred CCCEEEEEecCCeEEEEEccCCCceeccccccccchheeeccc
Confidence 9999999999999999999999887762 23456788888874
No 345
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.35 E-value=0.013 Score=59.75 Aligned_cols=143 Identities=16% Similarity=0.189 Sum_probs=78.6
Q ss_pred cCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEEC
Q 009715 209 NNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFS 288 (528)
Q Consensus 209 h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 288 (528)
.......+.++|+|+ .+++ +.||.-.||...... .. ..+....+.|.
T Consensus 31 ~~~~p~~ls~npngr-~v~V-~g~geY~iyt~~~~r--------------------------~k-----~~G~g~~~vw~ 77 (443)
T PF04053_consen 31 CEIYPQSLSHNPNGR-FVLV-CGDGEYEIYTALAWR--------------------------NK-----AFGSGLSFVWS 77 (443)
T ss_dssp -SS--SEEEE-TTSS-EEEE-EETTEEEEEETTTTE--------------------------EE-----EEEE-SEEEE-
T ss_pred CCcCCeeEEECCCCC-EEEE-EcCCEEEEEEccCCc--------------------------cc-----ccCceeEEEEe
Confidence 344578999999998 5555 668888888833100 00 01455578899
Q ss_pred CCCCEEEEEeCCCcEEEE-ecCCceEEeeecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCeE
Q 009715 289 TDGTYLATVGRDGYLRVF-DYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVS 367 (528)
Q Consensus 289 pdg~~l~s~~~dg~i~vw-d~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~~~~~~~~h~~~V~ 367 (528)
+.+ .+|+-.....|.|+ +++ .+....+.. ...+..|-. |.+|...+.+ .|.+||+++++.++.+.. . .|.
T Consensus 78 ~~n-~yAv~~~~~~I~I~kn~~-~~~~k~i~~-~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v-~-~vk 148 (443)
T PF04053_consen 78 SRN-RYAVLESSSTIKIYKNFK-NEVVKSIKL-PFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDV-S-AVK 148 (443)
T ss_dssp TSS-EEEEE-TTS-EEEEETTE-E-TT------SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-E
T ss_pred cCc-cEEEEECCCeEEEEEcCc-cccceEEcC-CcccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEec-C-CCc
Confidence 854 47777668889996 442 222122221 112333322 8877777654 899999999999999873 2 389
Q ss_pred EEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccC
Q 009715 368 GVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEM 407 (528)
Q Consensus 368 ~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~ 407 (528)
.|.|++ +| .+++-.+.+ .+.+++...
T Consensus 149 ~V~Ws~-------~g------~~val~t~~-~i~il~~~~ 174 (443)
T PF04053_consen 149 YVIWSD-------DG------ELVALVTKD-SIYILKYNL 174 (443)
T ss_dssp EEEE-T-------TS------SEEEEE-S--SEEEEEE-H
T ss_pred EEEEEC-------CC------CEEEEEeCC-eEEEEEecc
Confidence 999999 88 466666644 677766543
No 346
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.29 E-value=0.00082 Score=64.41 Aligned_cols=94 Identities=12% Similarity=-0.005 Sum_probs=78.2
Q ss_pred EEEEecCCceEEeeecccCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeEEEEeecCCCCeEEEEEecCCCCCCCC
Q 009715 303 LRVFDYSKEQLICGGKSYYGALLCCAWSMDGK-YILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSD 381 (528)
Q Consensus 303 i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~g~-~l~sg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~v~f~p~~~~~~~d 381 (528)
+++.+..+.+....+..+...|..++|+|..+ ++..++.+..|+|.|+++..++..+..| ..+.+.+|+- |
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDl-------d 246 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDL-------D 246 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeecc-------C
Confidence 66666665555566667788899999999877 7888999999999999999998888877 8899999987 5
Q ss_pred CCccceeEEEEEEeCCCeEEEEEccCCe
Q 009715 382 GTAETVMYRFGSVGQDTRLLLWDLEMDE 409 (528)
Q Consensus 382 g~~~~~~~~l~s~s~D~~i~lwd~~~~~ 409 (528)
.. .++..|-..|.|.+||++..+
T Consensus 247 e~-----h~IYaGl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 247 ER-----HVIYAGLQNGMVLVYDMRQPE 269 (463)
T ss_pred Cc-----ceeEEeccCceEEEEEccCCC
Confidence 42 688889999999999998654
No 347
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.28 E-value=0.00053 Score=61.12 Aligned_cols=103 Identities=17% Similarity=0.232 Sum_probs=68.0
Q ss_pred EEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEE-EECCCCCEEEEEeCCCcE
Q 009715 225 AFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSI-AFSTDGTYLATVGRDGYL 303 (528)
Q Consensus 225 ~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l-~~spdg~~l~s~~~dg~i 303 (528)
-+++|..+|.|++|+....+.....+.... ..|-++ .--.++.+..++..|+.|
T Consensus 72 ~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~-------------------------e~i~~~Ip~~~~~~~~c~~~~dg~i 126 (238)
T KOG2444|consen 72 KLMVGTSDGAVYVFNWNLEGAHSDRVCSGE-------------------------ESIDLGIPNGRDSSLGCVGAQDGRI 126 (238)
T ss_pred eEEeecccceEEEecCCccchHHHhhhccc-------------------------ccceeccccccccceeEEeccCCce
Confidence 699999999999999875443332222111 122222 222356688899999999
Q ss_pred EEEecCCceEEeeecccC-CCeEEEEEcCCCCEEEEE--eCCCcEEEEECCC
Q 009715 304 RVFDYSKEQLICGGKSYY-GALLCCAWSMDGKYILTG--GEDDLVQVWSMED 352 (528)
Q Consensus 304 ~vwd~~~~~~~~~~~~~~-~~v~~l~~sp~g~~l~sg--~~dg~v~vwd~~~ 352 (528)
|.|++.-.+.+.....|. .++..+..+..++++++. +.|..++.|++..
T Consensus 127 r~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 127 RACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred eeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 999999888777666666 455555555556666666 6677777777654
No 348
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.26 E-value=0.00087 Score=41.54 Aligned_cols=39 Identities=28% Similarity=0.563 Sum_probs=33.8
Q ss_pred ceEEeeecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 009715 311 EQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWS 349 (528)
Q Consensus 311 ~~~~~~~~~~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd 349 (528)
++++..+..|...|.++.|++++.++++++.|+.+++||
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 345566677888999999999999999999999999996
No 349
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.25 E-value=0.0021 Score=66.11 Aligned_cols=138 Identities=16% Similarity=0.171 Sum_probs=97.7
Q ss_pred cCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEEC
Q 009715 209 NNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFS 288 (528)
Q Consensus 209 h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 288 (528)
+...|.--+++..++ +++.|+.-|.|++|+-..+ .... ++ ..+-.+.+..+..+
T Consensus 32 ~~~~v~lTc~dst~~-~l~~GsS~G~lyl~~R~~~-~~~~-~~-----------------------~~~~~~~~~~~~vs 85 (726)
T KOG3621|consen 32 FPARVKLTCVDATEE-YLAMGSSAGSVYLYNRHTG-EMRK-LK-----------------------NEGATGITCVRSVS 85 (726)
T ss_pred CcceEEEEEeecCCc-eEEEecccceEEEEecCch-hhhc-cc-----------------------ccCccceEEEEEec
Confidence 445566566667788 9999999999999996532 1111 00 00023566777889
Q ss_pred CCCCEEEEEeCCCcEEEEecCCceEE-----ee-ecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC----eEEEE
Q 009715 289 TDGTYLATVGRDGYLRVFDYSKEQLI-----CG-GKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDR----KVVAW 358 (528)
Q Consensus 289 pdg~~l~s~~~dg~i~vwd~~~~~~~-----~~-~~~~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~----~~~~~ 358 (528)
++..++|.|+..|.|.++-+..+... .. -+.|...|++++|++|+..+.+|...|.|..-.+... ...+.
T Consensus 86 ~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~ 165 (726)
T KOG3621|consen 86 SVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQE 165 (726)
T ss_pred chhHhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccce
Confidence 99899999999999999988754321 11 1337789999999999999999999999998888762 12233
Q ss_pred eecCCCCeEEEEEe
Q 009715 359 GEGHNSWVSGVAFD 372 (528)
Q Consensus 359 ~~~h~~~V~~v~f~ 372 (528)
+..-.+.|..+.+.
T Consensus 166 il~~ds~IVQlD~~ 179 (726)
T KOG3621|consen 166 ILSEDSEIVQLDYL 179 (726)
T ss_pred eeccCcceEEeecc
Confidence 33356778788776
No 350
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.21 E-value=0.00098 Score=41.31 Aligned_cols=38 Identities=34% Similarity=0.656 Sum_probs=33.4
Q ss_pred CCeEEEeecCCCeEEEEECCCCCEEEEEeCCCcEEEEe
Q 009715 270 NPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFD 307 (528)
Q Consensus 270 ~~~~~~~~h~~~v~~l~~spdg~~l~s~~~dg~i~vwd 307 (528)
+++..+..|...|.++.|.+++.++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 34566777889999999999999999999999999996
No 351
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.17 E-value=0.084 Score=56.07 Aligned_cols=107 Identities=15% Similarity=0.067 Sum_probs=63.2
Q ss_pred CeEEEEECCCCCEEEEEeCC------------CcEEEEecCCceEEeeecccCCCeEEEEEcCCCCEEEEEeCCCcEEE-
Q 009715 281 SINSIAFSTDGTYLATVGRD------------GYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQV- 347 (528)
Q Consensus 281 ~v~~l~~spdg~~l~s~~~d------------g~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~sg~~dg~v~v- 347 (528)
....-.|+|||..|++.... +.+.+.+++.++... ...+.|..+.|||||..++... ++.|++
T Consensus 398 ~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va 473 (591)
T PRK13616 398 SLTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLA 473 (591)
T ss_pred CCCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEE
Confidence 36678999998877776532 233333444333322 2356799999999999888765 467777
Q ss_pred --EECCCCeE-E---EEee-cCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEc
Q 009715 348 --WSMEDRKV-V---AWGE-GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDL 405 (528)
Q Consensus 348 --wd~~~~~~-~---~~~~-~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~ 405 (528)
-....++. + ..+. +-...+.++.|.. ++ . |+.+..+....+|.+
T Consensus 474 ~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~-------~~------~-L~V~~~~~~~~v~~v 524 (591)
T PRK13616 474 VVEQTEDGQYALTNPREVGPGLGDTAVSLDWRT-------GD------S-LVVGRSDPEHPVWYV 524 (591)
T ss_pred EEEeCCCCceeecccEEeecccCCccccceEec-------CC------E-EEEEecCCCCceEEE
Confidence 44444531 1 1122 2334468899988 77 4 445444444444543
No 352
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.11 E-value=0.056 Score=43.00 Aligned_cols=102 Identities=21% Similarity=0.260 Sum_probs=67.4
Q ss_pred eeEEEEe---eCCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECC
Q 009715 213 CTSVTWV---PGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST 289 (528)
Q Consensus 213 v~~l~~~---p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp 289 (528)
|++|++. -+|.+.|++|+.|..|+||+-.. .+..+.. ...|.++.-..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e----------------------------~~~Ei~e-~~~v~~L~~~~ 52 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE----------------------------IVAEITE-TDKVTSLCSLG 52 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc----------------------------EEEEEec-ccceEEEEEcC
Confidence 4555554 46667999999999999998652 1222221 35677777666
Q ss_pred CCCEEEEEeCCCcEEEEecCCceEEeeecccCCCeEEEEEcC-C--C-CEEEEEeCCCcEEE
Q 009715 290 DGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSM-D--G-KYILTGGEDDLVQV 347 (528)
Q Consensus 290 dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp-~--g-~~l~sg~~dg~v~v 347 (528)
. ..++.+..+|+|-+|+-. +.+...+.. ..+.++++.. + | +.|++|-.+|.|-+
T Consensus 53 ~-~~F~Y~l~NGTVGvY~~~--~RlWRiKSK-~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 53 G-GRFAYALANGTVGVYDRS--QRLWRIKSK-NQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred C-CEEEEEecCCEEEEEeCc--ceeeeeccC-CCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 5 579999999999999863 334444433 3355665543 3 3 26888888888753
No 353
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.07 E-value=0.07 Score=42.47 Aligned_cols=104 Identities=14% Similarity=0.093 Sum_probs=70.0
Q ss_pred eEEEEECC---CC-CEEEEEeCCCcEEEEecCCceEEeeecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEE
Q 009715 282 INSIAFST---DG-TYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVA 357 (528)
Q Consensus 282 v~~l~~sp---dg-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~~~~ 357 (528)
|++|++.. || +.|++|+.|..||+|+-. +.+..+.. ...|.++.-... ..++-+-.+|+|-+|+.. ..+.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~--~RlW 75 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDRS--QRLW 75 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeCc--ceee
Confidence 45555554 33 589999999999999854 56666653 566777776655 568899999999999863 3344
Q ss_pred EeecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEE
Q 009715 358 WGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLL 401 (528)
Q Consensus 358 ~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~ 401 (528)
..+ ....+.++++.. .+.||. .-|++|-.+|.|-
T Consensus 76 RiK-SK~~~~~~~~~D----~~gdG~-----~eLI~GwsnGkve 109 (111)
T PF14783_consen 76 RIK-SKNQVTSMAFYD----INGDGV-----PELIVGWSNGKVE 109 (111)
T ss_pred eec-cCCCeEEEEEEc----CCCCCc-----eEEEEEecCCeEE
Confidence 444 334466776643 122442 4688888888774
No 354
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.06 E-value=0.14 Score=49.55 Aligned_cols=131 Identities=15% Similarity=0.133 Sum_probs=80.6
Q ss_pred CCeEEEEECCCCCEEEEEeC-----------CCcEEEEecCCceEEeeecccCCCeEEEEEcCCCCEEEEEeC-CCcEEE
Q 009715 280 GSINSIAFSTDGTYLATVGR-----------DGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGE-DDLVQV 347 (528)
Q Consensus 280 ~~v~~l~~spdg~~l~s~~~-----------dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~sg~~-dg~v~v 347 (528)
...+.+...|+|.+.+..-. -|.|+.+|. .+..+..+..+-..-+.|+||||++.|..... .+.|.-
T Consensus 111 ~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r 189 (307)
T COG3386 111 NRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHR 189 (307)
T ss_pred CCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEE
Confidence 34567788888876555433 133444443 45566655555556678999999987777655 477888
Q ss_pred EECCC--C----eE-EEEeecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCC-eEEEEEccCCeEEEEeecC-C
Q 009715 348 WSMED--R----KV-VAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDT-RLLLWDLEMDEIVVPLRRG-P 418 (528)
Q Consensus 348 wd~~~--~----~~-~~~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~-~i~lwd~~~~~~~~~~~~~-~ 418 (528)
|++.. + +. ...+..+.+..-.++.+. +| ++.+++-.++ .|.+|+.. ++.+..+... .
T Consensus 190 ~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDa-------dG------~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~ 255 (307)
T COG3386 190 YDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDA-------DG------NLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVK 255 (307)
T ss_pred EecCcccCccCCcceEEEccCCCCCCCceEEeC-------CC------CEEEecccCCceEEEECCC-CcEEEEEECCCC
Confidence 87762 1 11 112222344455666666 77 3443444443 99999988 8888888775 4
Q ss_pred CCCCCee
Q 009715 419 LGGSPTF 425 (528)
Q Consensus 419 ~~~~~~~ 425 (528)
...+++|
T Consensus 256 ~~t~~~F 262 (307)
T COG3386 256 RPTNPAF 262 (307)
T ss_pred CCccceE
Confidence 5555555
No 355
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.04 E-value=0.32 Score=46.51 Aligned_cols=146 Identities=21% Similarity=0.236 Sum_probs=87.9
Q ss_pred CCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCCCCEEEEEeCC
Q 009715 221 GGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRD 300 (528)
Q Consensus 221 ~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~~~d 300 (528)
.++ .|+.|..+| |++++...... +.+..+ ...|..+...++-+.|++-+ |
T Consensus 6 ~~~-~L~vGt~~G-l~~~~~~~~~~-------------------------~~~i~~--~~~I~ql~vl~~~~~llvLs-d 55 (275)
T PF00780_consen 6 WGD-RLLVGTEDG-LYVYDLSDPSK-------------------------PTRILK--LSSITQLSVLPELNLLLVLS-D 55 (275)
T ss_pred CCC-EEEEEECCC-EEEEEecCCcc-------------------------ceeEee--cceEEEEEEecccCEEEEEc-C
Confidence 455 799999998 89999832111 111111 13488999999777666664 5
Q ss_pred CcEEEEecCCceEEee--------------ecccCCCeEEEE---EcCCCCEEEEEeCCCcEEEEECCCC-----eEEEE
Q 009715 301 GYLRVFDYSKEQLICG--------------GKSYYGALLCCA---WSMDGKYILTGGEDDLVQVWSMEDR-----KVVAW 358 (528)
Q Consensus 301 g~i~vwd~~~~~~~~~--------------~~~~~~~v~~l~---~sp~g~~l~sg~~dg~v~vwd~~~~-----~~~~~ 358 (528)
+.++++++..-..... .......+...+ -.....+|+++. ...|.+|..... +....
T Consensus 56 ~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~-kk~i~i~~~~~~~~~f~~~~ke 134 (275)
T PF00780_consen 56 GQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAV-KKKILIYEWNDPRNSFSKLLKE 134 (275)
T ss_pred CccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEE-CCEEEEEEEECCcccccceeEE
Confidence 9999999875433321 011223444444 122333455544 458888887652 34455
Q ss_pred eecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEEEe
Q 009715 359 GEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPL 414 (528)
Q Consensus 359 ~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~ 414 (528)
+. -...+..++|.+ + .++.+..+ ...+.|+.++....-+
T Consensus 135 ~~-lp~~~~~i~~~~-------~--------~i~v~~~~-~f~~idl~~~~~~~l~ 173 (275)
T PF00780_consen 135 IS-LPDPPSSIAFLG-------N--------KICVGTSK-GFYLIDLNTGSPSELL 173 (275)
T ss_pred EE-cCCCcEEEEEeC-------C--------EEEEEeCC-ceEEEecCCCCceEEe
Confidence 54 557899999986 3 45555544 4788899877654433
No 356
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.00 E-value=0.097 Score=52.24 Aligned_cols=248 Identities=16% Similarity=0.147 Sum_probs=113.3
Q ss_pred CCCCCeEEEEecCCcEEEEEcccccc----ccccceeeeee----eccCCcccCCceeEEEEeeCCCcEEEEEeCCceEE
Q 009715 165 AKDGHDLLIGLNSGDVYSVSLRQQLQ----DVGKKLVGAHH----YNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLY 236 (528)
Q Consensus 165 ~~~~~~l~~g~~~G~v~iwd~~~~~~----~~~~~~~~~~~----~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~ 236 (528)
+|+++.++... ++.|+++++..... ..+........ +.++ --+.-..+-|+||++.+++.--.+..|.
T Consensus 51 sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEE---v~~~~~~~~WSpd~~~la~~~~d~~~v~ 126 (353)
T PF00930_consen 51 SPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEE---VFDRRSAVWWSPDSKYLAFLRFDEREVP 126 (353)
T ss_dssp -SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHH---TSSSSBSEEE-TTSSEEEEEEEE-TTS-
T ss_pred ecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceecccc---ccccccceEECCCCCEEEEEEECCcCCc
Confidence 88988887765 46899998754210 00000000000 0000 0123357899999994444444556666
Q ss_pred EEEcCCCCCCC--------Cccccccccc---eeEEeccCCCCCCCeEEE---eecCCCeEEEEECCCCCEEEEE--eCC
Q 009715 237 VYEKSKDGAGD--------SSFPVIKDQT---QFSVAHPRYSKSNPIARW---HICQGSINSIAFSTDGTYLATV--GRD 300 (528)
Q Consensus 237 vwd~~~~~~~~--------~~~~~~~~~~---~~~~~~~~~~~~~~~~~~---~~h~~~v~~l~~spdg~~l~s~--~~d 300 (528)
.+.+..-.... ..++...+.+ .+.+......+...+... ..-..-+..+.|.+++..|+.. .++
T Consensus 127 ~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~ 206 (353)
T PF00930_consen 127 EYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRD 206 (353)
T ss_dssp EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETT
T ss_pred eEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccC
Confidence 66553211111 1111111111 111111111111111111 1123457889999998844443 333
Q ss_pred C---cEEEEecCCceEEeeecc-cC---CCeEEEEEc-CCCC-EEEEEeCCCc--EEEEECCCCeEEEEeecCCCCeEE-
Q 009715 301 G---YLRVFDYSKEQLICGGKS-YY---GALLCCAWS-MDGK-YILTGGEDDL--VQVWSMEDRKVVAWGEGHNSWVSG- 368 (528)
Q Consensus 301 g---~i~vwd~~~~~~~~~~~~-~~---~~v~~l~~s-p~g~-~l~sg~~dg~--v~vwd~~~~~~~~~~~~h~~~V~~- 368 (528)
. .+.++|..+++....... .. .......|. +++. +|.....||. |.+++...+. ...+....-.|..
T Consensus 207 q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~~~V~~i 285 (353)
T PF00930_consen 207 QNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTSGDWEVTSI 285 (353)
T ss_dssp STEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS-SSS-EEEE
T ss_pred CCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc-eeccccCceeeccc
Confidence 2 467778876644322222 11 222345554 6555 4555557775 4455555555 3455545556754
Q ss_pred EEEecCCCCCCCCCCccceeEEEEEEeCC--C--eEEEEEccCCeEEEEeecCCCCC-CCeecCCC
Q 009715 369 VAFDSYWSQPNSDGTAETVMYRFGSVGQD--T--RLLLWDLEMDEIVVPLRRGPLGG-SPTFSTGS 429 (528)
Q Consensus 369 v~f~p~~~~~~~dg~~~~~~~~l~s~s~D--~--~i~lwd~~~~~~~~~~~~~~~~~-~~~~s~~~ 429 (528)
+.|++ +++ .+++++..+ . .|..-++..+.....+....... .+.|++++
T Consensus 286 ~~~d~-------~~~-----~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg 339 (353)
T PF00930_consen 286 LGWDE-------DNN-----RIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDG 339 (353)
T ss_dssp EEEEC-------TSS-----EEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTS
T ss_pred ceEcC-------CCC-----EEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCC
Confidence 67777 542 445555542 3 44444555234455565545555 67787776
No 357
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=96.99 E-value=0.23 Score=46.40 Aligned_cols=194 Identities=15% Similarity=0.216 Sum_probs=98.3
Q ss_pred CCCC-eEEEEecCCcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCC
Q 009715 166 KDGH-DLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDG 244 (528)
Q Consensus 166 ~~~~-~l~~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~ 244 (528)
++.+ .+++....+.|+.++...+ +.....+. .-+-...|++..++. ++++.-.++.+.++++...+
T Consensus 31 pd~~tLfaV~d~~~~i~els~~G~-------vlr~i~l~-----g~~D~EgI~y~g~~~-~vl~~Er~~~L~~~~~~~~~ 97 (248)
T PF06977_consen 31 PDTGTLFAVQDEPGEIYELSLDGK-------VLRRIPLD-----GFGDYEGITYLGNGR-YVLSEERDQRLYIFTIDDDT 97 (248)
T ss_dssp TTTTEEEEEETTTTEEEEEETT---------EEEEEE-S-----S-SSEEEEEE-STTE-EEEEETTTTEEEEEEE----
T ss_pred CCCCeEEEEECCCCEEEEEcCCCC-------EEEEEeCC-----CCCCceeEEEECCCE-EEEEEcCCCcEEEEEEeccc
Confidence 4433 4456666777776665431 12222221 134577889987776 56656568999999996533
Q ss_pred CCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCCCCEEEEEeCCCcEEEEecCC---ceEEe--ee--
Q 009715 245 AGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSK---EQLIC--GG-- 317 (528)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~~~dg~i~vwd~~~---~~~~~--~~-- 317 (528)
.....-. ...+.+.. -..+...+-.++|.+.++.|+.+-...-..+|.+.. ...+. ..
T Consensus 98 ~~~~~~~----~~~~~l~~-----------~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~ 162 (248)
T PF06977_consen 98 TSLDRAD----VQKISLGF-----------PNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQD 162 (248)
T ss_dssp TT--EEE----EEEEE--------------S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HH
T ss_pred cccchhh----ceEEeccc-----------ccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccc
Confidence 2111000 00000000 012345688999999877777777666666766643 11111 11
Q ss_pred ----cccCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCeEEEEeecCC---------CCeEEEEEecCCCCCCCCCC
Q 009715 318 ----KSYYGALLCCAWSMD-GKYILTGGEDDLVQVWSMEDRKVVAWGEGHN---------SWVSGVAFDSYWSQPNSDGT 383 (528)
Q Consensus 318 ----~~~~~~v~~l~~sp~-g~~l~sg~~dg~v~vwd~~~~~~~~~~~~h~---------~~V~~v~f~p~~~~~~~dg~ 383 (528)
......+..++++|. +.+++.......|.++| .+|+++..+.--. .....|+|++ +|
T Consensus 163 ~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~-------~G- 233 (248)
T PF06977_consen 163 LDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDP-------DG- 233 (248)
T ss_dssp HH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-T-------T--
T ss_pred cccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECC-------CC-
Confidence 112345788999995 55677777888999999 5677665543111 3578999999 88
Q ss_pred ccceeEEEEEEeCCCeEEE
Q 009715 384 AETVMYRFGSVGQDTRLLL 402 (528)
Q Consensus 384 ~~~~~~~l~s~s~D~~i~l 402 (528)
.|...++-+...+
T Consensus 234 ------~LYIvsEpNlfy~ 246 (248)
T PF06977_consen 234 ------NLYIVSEPNLFYR 246 (248)
T ss_dssp -------EEEEETTTEEEE
T ss_pred ------CEEEEcCCceEEE
Confidence 3445555554443
No 358
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.96 E-value=0.066 Score=49.62 Aligned_cols=160 Identities=15% Similarity=0.209 Sum_probs=95.6
Q ss_pred EEEeeCCCcEEEEEeCC-----ceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCC
Q 009715 216 VTWVPGGDGAFVVGHAD-----GNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTD 290 (528)
Q Consensus 216 l~~~p~g~~~l~tg~~d-----g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spd 290 (528)
-.|+|||. +|...-.| |.|-|||.+.. ...+..|..|.-....+.|.+|
T Consensus 119 Gvfs~dG~-~LYATEndfd~~rGViGvYd~r~~-------------------------fqrvgE~~t~GiGpHev~lm~D 172 (366)
T COG3490 119 GVFSPDGR-LLYATENDFDPNRGVIGVYDAREG-------------------------FQRVGEFSTHGIGPHEVTLMAD 172 (366)
T ss_pred cccCCCCc-EEEeecCCCCCCCceEEEEecccc-------------------------cceecccccCCcCcceeEEecC
Confidence 36899999 67665443 78999998742 3456667777777889999999
Q ss_pred CCEEEEEeC------------------CCcEEEEecCCceEEeeec----ccCCCeEEEEEcCCCCEEEEEeCCC----c
Q 009715 291 GTYLATVGR------------------DGYLRVFDYSKEQLICGGK----SYYGALLCCAWSMDGKYILTGGEDD----L 344 (528)
Q Consensus 291 g~~l~s~~~------------------dg~i~vwd~~~~~~~~~~~----~~~~~v~~l~~sp~g~~l~sg~~dg----~ 344 (528)
|+.|+.+.. .-.+.+.|..+|+++.+.. .+.-.|.-++..+||..++-+-..| .
T Consensus 173 GrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ 252 (366)
T COG3490 173 GRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDL 252 (366)
T ss_pred CcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccC
Confidence 999988743 1234444544555543321 1234566777777776544432111 1
Q ss_pred -EEEEECCCCeEEEEee-------cCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEEE
Q 009715 345 -VQVWSMEDRKVVAWGE-------GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVP 413 (528)
Q Consensus 345 -v~vwd~~~~~~~~~~~-------~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~ 413 (528)
-.|=....++++.-+. .....|-+|+.+.. +| ...+|.-..+...+||..++..+..
T Consensus 253 ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~------~g------lV~lTSP~GN~~vi~da~tG~vv~~ 317 (366)
T COG3490 253 PPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRR------DG------LVALTSPRGNRAVIWDAATGAVVSE 317 (366)
T ss_pred CcceeeccCCCcCcccCCCHHHHHHHHhhhhheeeccc------CC------eEEEecCCCCeEEEEEcCCCcEEec
Confidence 1111112233333332 23346667777641 45 4555555667888999999987643
No 359
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=96.95 E-value=0.0015 Score=68.25 Aligned_cols=109 Identities=15% Similarity=0.223 Sum_probs=87.5
Q ss_pred EEEEECCCCCEEEEEe----CCCcEEEEecCCceEEeeecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEE
Q 009715 283 NSIAFSTDGTYLATVG----RDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAW 358 (528)
Q Consensus 283 ~~l~~spdg~~l~s~~----~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~~~~~ 358 (528)
+-.+|+|...++++++ ..|.|.|| .++|++-.... +.-.+.+++|+|..-.|+.|-+-|.+.+|...+.+.-..
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIf-adtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv 96 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIF-ADTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTV 96 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEE-ecCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCCceeeee
Confidence 3467899888888876 45788888 35566533222 233466799999988899999999999999988877666
Q ss_pred eecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEcc
Q 009715 359 GEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLE 406 (528)
Q Consensus 359 ~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~ 406 (528)
...|..+|..+.|++ +| ..|+++..-|.|.+|...
T Consensus 97 ~~th~a~i~~l~wS~-------~G------~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 97 VETHPAPIQGLDWSH-------DG------TVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred ccCCCCCceeEEecC-------CC------CeEEEcCCCceeEEEEee
Confidence 678999999999999 99 799999999999999776
No 360
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.95 E-value=0.56 Score=47.74 Aligned_cols=164 Identities=15% Similarity=0.145 Sum_probs=81.2
Q ss_pred CceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCC
Q 009715 211 SRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTD 290 (528)
Q Consensus 211 ~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spd 290 (528)
+.|.++.|..+.+ |++-..||.+++||+.- .. .+.... .+.........+....+..+
T Consensus 81 ~~iv~~~wt~~e~--LvvV~~dG~v~vy~~~G--~~--~fsl~~----------------~i~~~~v~e~~i~~~~~~~~ 138 (410)
T PF04841_consen 81 GRIVGMGWTDDEE--LVVVQSDGTVRVYDLFG--EF--QFSLGE----------------EIEEEKVLECRIFAIWFYKN 138 (410)
T ss_pred CCEEEEEECCCCe--EEEEEcCCEEEEEeCCC--ce--eechhh----------------hccccCcccccccccccCCC
Confidence 6899999988655 77778999999999862 21 111100 01111111122333334334
Q ss_pred CCEEEEEeCCCcEEEEecCCce-EEeeecccCCCeEE----------EEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEe
Q 009715 291 GTYLATVGRDGYLRVFDYSKEQ-LICGGKSYYGALLC----------CAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWG 359 (528)
Q Consensus 291 g~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~~v~~----------l~~sp~g~~l~sg~~dg~v~vwd~~~~~~~~~~ 359 (528)
|-.++ ..++.+.+.+-.... ....+..-...... ..++.+....+....++.+.+.+-...+. +
T Consensus 139 GivvL--t~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i 213 (410)
T PF04841_consen 139 GIVVL--TGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---I 213 (410)
T ss_pred CEEEE--CCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---c
Confidence 52222 333444333222111 11111100000000 22333444444444444555333222111 2
Q ss_pred ecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEEEee
Q 009715 360 EGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLR 415 (528)
Q Consensus 360 ~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~ 415 (528)
. ..+++..++.+| +| .+++.-..+|.+.+....-.+....+.
T Consensus 214 ~-~~~~i~~iavSp-------ng------~~iAl~t~~g~l~v~ssDf~~~~~e~~ 255 (410)
T PF04841_consen 214 D-SDGPIIKIAVSP-------NG------KFIALFTDSGNLWVVSSDFSEKLCEFD 255 (410)
T ss_pred c-CCCCeEEEEECC-------CC------CEEEEEECCCCEEEEECcccceeEEee
Confidence 2 246799999999 98 688888888999888766555554443
No 361
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.89 E-value=0.033 Score=60.15 Aligned_cols=123 Identities=20% Similarity=0.232 Sum_probs=82.9
Q ss_pred CCCeEEEeecCCC-eEEEEECC-----CCCEEEEEeCCCcEEEEecCCc--eEEe-eec--ccCCCeEEEEEcCCCCEEE
Q 009715 269 SNPIARWHICQGS-INSIAFST-----DGTYLATVGRDGYLRVFDYSKE--QLIC-GGK--SYYGALLCCAWSMDGKYIL 337 (528)
Q Consensus 269 ~~~~~~~~~h~~~-v~~l~~sp-----dg~~l~s~~~dg~i~vwd~~~~--~~~~-~~~--~~~~~v~~l~~sp~g~~l~ 337 (528)
...|..|..|... |..++=.. +....+.|-.+..|..||.+-. +++. ..+ .......|++-..+| +||
T Consensus 514 GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G-~ia 592 (794)
T PF08553_consen 514 GKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDG-YIA 592 (794)
T ss_pred CcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCCc-eEE
Confidence 4678888887644 55443221 2345677777888999999743 2331 111 123467788888777 799
Q ss_pred EEeCCCcEEEEECCCCeEEEEeecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEcc
Q 009715 338 TGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLE 406 (528)
Q Consensus 338 sg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~ 406 (528)
+|+.+|.||+||--..+....+.+-..+|..|..+. || +++++.+ +..|.|+|..
T Consensus 593 vgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~-------DG------kwilaTc-~tyLlLi~t~ 647 (794)
T PF08553_consen 593 VGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTA-------DG------KWILATC-KTYLLLIDTL 647 (794)
T ss_pred EEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecC-------CC------cEEEEee-cceEEEEEEe
Confidence 999999999999433333444567789999999999 99 4544443 5678888853
No 362
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=96.89 E-value=0.76 Score=48.41 Aligned_cols=73 Identities=8% Similarity=0.106 Sum_probs=48.4
Q ss_pred EEEECCCCCEEEEEeCC-----C-----------cEEEEecCCceEEeeecc--cC-------CCeEEEEEcCCCC---E
Q 009715 284 SIAFSTDGTYLATVGRD-----G-----------YLRVFDYSKEQLICGGKS--YY-------GALLCCAWSMDGK---Y 335 (528)
Q Consensus 284 ~l~~spdg~~l~s~~~d-----g-----------~i~vwd~~~~~~~~~~~~--~~-------~~v~~l~~sp~g~---~ 335 (528)
.+++.|+..+|..+..+ + .|.-.|+++|+....+.. |. ....-+.+..+|+ .
T Consensus 238 ~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~ 317 (527)
T TIGR03075 238 TGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKL 317 (527)
T ss_pred ceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEE
Confidence 34666655555555422 2 677889999998766543 21 1112233334676 7
Q ss_pred EEEEeCCCcEEEEECCCCeEE
Q 009715 336 ILTGGEDDLVQVWSMEDRKVV 356 (528)
Q Consensus 336 l~sg~~dg~v~vwd~~~~~~~ 356 (528)
++.+..+|.+.++|-++++++
T Consensus 318 v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 318 LAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred EEEeCCCceEEEEECCCCcee
Confidence 778999999999999999886
No 363
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.73 E-value=0.033 Score=60.14 Aligned_cols=106 Identities=20% Similarity=0.421 Sum_probs=72.0
Q ss_pred CCCeEEEEecCCcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCC
Q 009715 167 DGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAG 246 (528)
Q Consensus 167 ~~~~l~~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~ 246 (528)
.....++|.++..|..||.|-. +.+++... .+.. ......+|++-..+| +||+|+.+|.||+||-- +...
T Consensus 541 t~e~tflGls~n~lfriDpR~~----~~k~v~~~--~k~Y-~~~~~Fs~~aTt~~G--~iavgs~~G~IRLyd~~-g~~A 610 (794)
T PF08553_consen 541 TNEQTFLGLSDNSLFRIDPRLS----GNKLVDSQ--SKQY-SSKNNFSCFATTEDG--YIAVGSNKGDIRLYDRL-GKRA 610 (794)
T ss_pred CCCceEEEECCCceEEeccCCC----CCceeecc--cccc-ccCCCceEEEecCCc--eEEEEeCCCcEEeeccc-chhh
Confidence 3457789999999999999852 12222110 1111 255678888888777 59999999999999942 2222
Q ss_pred CCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCCCCEEEEEeCCCcEEEEec
Q 009715 247 DSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDY 308 (528)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~~~dg~i~vwd~ 308 (528)
...+| +-..+|..|+.+.||++|+..+. ..|.+++.
T Consensus 611 KT~lp-------------------------~lG~pI~~iDvt~DGkwilaTc~-tyLlLi~t 646 (794)
T PF08553_consen 611 KTALP-------------------------GLGDPIIGIDVTADGKWILATCK-TYLLLIDT 646 (794)
T ss_pred hhcCC-------------------------CCCCCeeEEEecCCCcEEEEeec-ceEEEEEE
Confidence 22222 22479999999999999887764 56777775
No 364
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.65 E-value=0.15 Score=54.12 Aligned_cols=103 Identities=20% Similarity=0.202 Sum_probs=61.7
Q ss_pred CCeEEEEECCCCCEEEEEe------CCC--cEEEEecCCceEEeeecccCCCeEEEEEcCCCCEEEEEeCC---------
Q 009715 280 GSINSIAFSTDGTYLATVG------RDG--YLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGED--------- 342 (528)
Q Consensus 280 ~~v~~l~~spdg~~l~s~~------~dg--~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~sg~~d--------- 342 (528)
..+...+++|||+.++..- .|. .|.+++.. +.......+ .....-.|+|||+.|++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g--~~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEG--HSLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-CcceeeecC--CCCCCceECCCCCceEEEecCcceEEEecc
Confidence 4577899999999888775 243 45555653 222222222 237778999998877776532
Q ss_pred ---CcEEEEECCCCeEEEEeecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEE
Q 009715 343 ---DLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLL 402 (528)
Q Consensus 343 ---g~v~vwd~~~~~~~~~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~l 402 (528)
+.+.+.+++.++... .....|..+.|+| || .+++... +++|.+
T Consensus 427 ~~~gql~~~~vd~ge~~~---~~~g~Issl~wSp-------DG------~RiA~i~-~g~v~V 472 (591)
T PRK13616 427 PATGQLARTPVDASAVAS---RVPGPISELQLSR-------DG------VRAAMII-GGKVYL 472 (591)
T ss_pred CCCceEEEEeccCchhhh---ccCCCcCeEEECC-------CC------CEEEEEE-CCEEEE
Confidence 223333443333222 2356799999999 99 4554443 355544
No 365
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.65 E-value=0.9 Score=45.83 Aligned_cols=164 Identities=17% Similarity=0.133 Sum_probs=108.6
Q ss_pred ceeEEEEeeCCCcEEEEEe--CCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECC
Q 009715 212 RCTSVTWVPGGDGAFVVGH--ADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST 289 (528)
Q Consensus 212 ~v~~l~~~p~g~~~l~tg~--~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp 289 (528)
....++++|+++.+.++-. .++++.+.|..+.... .....-..+ ..+++.|
T Consensus 117 ~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~--------------------------~~~~vG~~P-~~~a~~p 169 (381)
T COG3391 117 GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVT--------------------------ATIPVGNTP-TGVAVDP 169 (381)
T ss_pred CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEE--------------------------EEEecCCCc-ceEEECC
Confidence 4567999999984444444 3678888876642211 111101123 7899999
Q ss_pred CCCEEEEEe-CCCcEEEEecCCceEEe-e----ecccCCCeEEEEEcCCCCEEEEEeCC---CcEEEEECCCCeEEEEee
Q 009715 290 DGTYLATVG-RDGYLRVFDYSKEQLIC-G----GKSYYGALLCCAWSMDGKYILTGGED---DLVQVWSMEDRKVVAWGE 360 (528)
Q Consensus 290 dg~~l~s~~-~dg~i~vwd~~~~~~~~-~----~~~~~~~v~~l~~sp~g~~l~sg~~d---g~v~vwd~~~~~~~~~~~ 360 (528)
+|+.++... .++.|.+.|........ . .. -...-..+.++|+|.++.+.... +.+.+.|..++.......
T Consensus 170 ~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~-~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~ 248 (381)
T COG3391 170 DGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVG-VGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDL 248 (381)
T ss_pred CCCeEEEEecCCCeEEEEeCCCcceeccccccccc-cCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEecc
Confidence 999777665 77899999987666553 1 11 12334568999999976665443 589999999887766522
Q ss_pred cCCC-CeEEEEEecCCCCCCCCCCccceeEEEEEE-eCCCeEEEEEccCCeEEEEeec
Q 009715 361 GHNS-WVSGVAFDSYWSQPNSDGTAETVMYRFGSV-GQDTRLLLWDLEMDEIVVPLRR 416 (528)
Q Consensus 361 ~h~~-~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~-s~D~~i~lwd~~~~~~~~~~~~ 416 (528)
.-.. ....+.++| +| ..+... ...+.+.+.|..+......+..
T Consensus 249 ~~~~~~~~~v~~~p-------~g------~~~yv~~~~~~~V~vid~~~~~v~~~~~~ 293 (381)
T COG3391 249 PVGSGAPRGVAVDP-------AG------KAAYVANSQGGTVSVIDGATDRVVKTGPT 293 (381)
T ss_pred ccccCCCCceeECC-------CC------CEEEEEecCCCeEEEEeCCCCceeeeecc
Confidence 1222 567789999 88 444444 4568999999998887776554
No 366
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.65 E-value=0.9 Score=45.83 Aligned_cols=220 Identities=15% Similarity=0.145 Sum_probs=132.4
Q ss_pred ceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCCC
Q 009715 212 RCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDG 291 (528)
Q Consensus 212 ~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spdg 291 (528)
.-..++.++.+...++....+..|.+.|........ .+. -......+++++++
T Consensus 75 ~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~-----------------------~~~----vG~~P~~~~~~~~~ 127 (381)
T COG3391 75 YPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLG-----------------------SIP----VGLGPVGLAVDPDG 127 (381)
T ss_pred cccceeeCCCCCeEEEecCCCCeEEEEcCcccceee-----------------------Eee----eccCCceEEECCCC
Confidence 345788888888666667677899999955421100 000 01255689999999
Q ss_pred CEEEEEeC---CCcEEEEecCCceEEeeecccCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCeEEE-E---eecCC
Q 009715 292 TYLATVGR---DGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGG-EDDLVQVWSMEDRKVVA-W---GEGHN 363 (528)
Q Consensus 292 ~~l~s~~~---dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~sg~-~dg~v~vwd~~~~~~~~-~---~~~h~ 363 (528)
+.+.++.. ++.+.+.|..+.+.+.....-..+ ..+++.|+|..+.... .++.|.++|........ . ...-.
T Consensus 128 ~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~ 206 (381)
T COG3391 128 KYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVG 206 (381)
T ss_pred CEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccC
Confidence 87777765 688999999988888775433334 7899999999766655 68899999977665543 1 01122
Q ss_pred CCeEEEEEecCCCCCCCCCCccceeEEEEEEeC--CCeEEEEEccCCeEEEE-eecCC-CCCCCeecCCCCCccCCceee
Q 009715 364 SWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQ--DTRLLLWDLEMDEIVVP-LRRGP-LGGSPTFSTGSQSAHWDNVCP 439 (528)
Q Consensus 364 ~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~--D~~i~lwd~~~~~~~~~-~~~~~-~~~~~~~s~~~~~~~~d~~~~ 439 (528)
..-..+.++| ||. +..++... ++.+...|..++..... +.... ....+.+.+.+... ..
T Consensus 207 ~~P~~i~v~~-------~g~-----~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~-----yv 269 (381)
T COG3391 207 TGPAGIAVDP-------DGN-----RVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAA-----YV 269 (381)
T ss_pred CCCceEEECC-------CCC-----EEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEE-----EE
Confidence 3345688888 882 23333333 36999999998877665 22212 34455666665310 01
Q ss_pred eecCCCCceeeecCCCCceEEeecCC---CCeEEEEEeCC
Q 009715 440 VGTLQPAPSMRDVPKLSPLVAHRVHT---EPLSGLIFTQE 476 (528)
Q Consensus 440 ~g~~~~~~~~~d~~~~~~~~~~~~h~---~~V~~l~~s~d 476 (528)
.-.....+.+-|.............. ..+..+++.+.
T Consensus 270 ~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 309 (381)
T COG3391 270 ANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPL 309 (381)
T ss_pred EecCCCeEEEEeCCCCceeeeecccccccccceeccceee
Confidence 11113444555555544443333222 23555666553
No 367
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.64 E-value=0.13 Score=47.84 Aligned_cols=105 Identities=16% Similarity=0.173 Sum_probs=71.3
Q ss_pred ceeEEEEeeCCCcEEEEEeCCce-EEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCC
Q 009715 212 RCTSVTWVPGGDGAFVVGHADGN-LYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTD 290 (528)
Q Consensus 212 ~v~~l~~~p~g~~~l~tg~~dg~-v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spd 290 (528)
+...|+|+|.-++-++.+-.-|+ ..++|.... .....+.. ..-+.+-+| -.||||
T Consensus 69 R~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~-~~pv~~~s-----------------~~~RHfyGH------Gvfs~d 124 (366)
T COG3490 69 RGHGIAFHPALPRAVAFARRPGTFAMVFDPNGA-QEPVTLVS-----------------QEGRHFYGH------GVFSPD 124 (366)
T ss_pred ccCCeecCCCCcceEEEEecCCceEEEECCCCC-cCcEEEec-----------------ccCceeecc------cccCCC
Confidence 46678999988867777777776 467887642 21111111 111223333 368999
Q ss_pred CCEEEEEeCC-----CcEEEEecCCc-eEEeeecccCCCeEEEEEcCCCCEEEEEe
Q 009715 291 GTYLATVGRD-----GYLRVFDYSKE-QLICGGKSYYGALLCCAWSMDGKYILTGG 340 (528)
Q Consensus 291 g~~l~s~~~d-----g~i~vwd~~~~-~~~~~~~~~~~~v~~l~~sp~g~~l~sg~ 340 (528)
|.+|...-.| |.|-|||.+.+ +.+..+..|.-....+.|.+||+.|+.+.
T Consensus 125 G~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan 180 (366)
T COG3490 125 GRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN 180 (366)
T ss_pred CcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeC
Confidence 9988876544 68999999844 44566777777788999999999998874
No 368
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.63 E-value=0.43 Score=46.86 Aligned_cols=194 Identities=15% Similarity=0.135 Sum_probs=104.1
Q ss_pred CCeEEEEec---------C-CcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeCCceEEE
Q 009715 168 GHDLLIGLN---------S-GDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYV 237 (528)
Q Consensus 168 ~~~l~~g~~---------~-G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~v 237 (528)
..++++|+. . |.|+++++..... ...++.. .... ...++|++|+-. ++ .|+++. .+.|++
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~-~~~~l~~--i~~~---~~~g~V~ai~~~-~~--~lv~~~-g~~l~v 111 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPE-NNFKLKL--IHST---EVKGPVTAICSF-NG--RLVVAV-GNKLYV 111 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS------EEEE--EEEE---EESS-EEEEEEE-TT--EEEEEE-TTEEEE
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccc-cceEEEE--EEEE---eecCcceEhhhh-CC--EEEEee-cCEEEE
Confidence 567787775 2 8999999886200 0011111 0111 156789988877 33 454444 378999
Q ss_pred EEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCCCCEEEEEeCCCcEEEEecCC-ce-EEe
Q 009715 238 YEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSK-EQ-LIC 315 (528)
Q Consensus 238 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~~~dg~i~vwd~~~-~~-~~~ 315 (528)
|++.... . ..+...++.+ ..+.++... +++|++|.....+.++.++. .+ ...
T Consensus 112 ~~l~~~~----~-------------------l~~~~~~~~~-~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~ 165 (321)
T PF03178_consen 112 YDLDNSK----T-------------------LLKKAFYDSP-FYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLIL 165 (321)
T ss_dssp EEEETTS----S-------------------EEEEEEE-BS-SSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEE
T ss_pred EEccCcc----c-------------------chhhheecce-EEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEE
Confidence 9998632 0 0111222221 245555544 66999999888888775543 23 322
Q ss_pred eecc-cCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC-------C--eE--EEEeecCCCCeEEE---EEecCCCCCCC
Q 009715 316 GGKS-YYGALLCCAWSMDGKYILTGGEDDLVQVWSMED-------R--KV--VAWGEGHNSWVSGV---AFDSYWSQPNS 380 (528)
Q Consensus 316 ~~~~-~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~-------~--~~--~~~~~~h~~~V~~v---~f~p~~~~~~~ 380 (528)
.-+. ....+.++.+-++++.++.+..+|.+.++.... + +. +..+. ....|+++ .+.|. .
T Consensus 166 va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~-lg~~v~~~~~~~l~~~-----~ 239 (321)
T PF03178_consen 166 VARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFH-LGDIVNSFRRGSLIPR-----S 239 (321)
T ss_dssp EEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE--SS-EEEEEE--SS-------S
T ss_pred EEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEE-CCCccceEEEEEeeec-----C
Confidence 2221 234578888886777999999999999998763 1 22 22222 34567777 33330 0
Q ss_pred CCCccceeEEEEEEeCCCeEEEE
Q 009715 381 DGTAETVMYRFGSVGQDTRLLLW 403 (528)
Q Consensus 381 dg~~~~~~~~l~s~s~D~~i~lw 403 (528)
.+........++-++.+|.|.+.
T Consensus 240 ~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 240 GSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp SSS-TTEEEEEEEEETTS-EEEE
T ss_pred CCCcccccceEEEEecCCEEEEE
Confidence 01000012457777888888743
No 369
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=96.53 E-value=1.4 Score=46.52 Aligned_cols=27 Identities=7% Similarity=-0.058 Sum_probs=23.9
Q ss_pred EEEEEeCCCeEEEEEccCCeEEEEeec
Q 009715 390 RFGSVGQDTRLLLWDLEMDEIVVPLRR 416 (528)
Q Consensus 390 ~l~s~s~D~~i~lwd~~~~~~~~~~~~ 416 (528)
+++.+..||.++.+|.++++.+..++.
T Consensus 474 lvf~g~~~G~l~a~D~~TGe~lw~~~~ 500 (527)
T TIGR03075 474 LVFYGTLEGYFKAFDAKTGEELWKFKT 500 (527)
T ss_pred EEEEECCCCeEEEEECCCCCEeEEEeC
Confidence 677788899999999999999988875
No 370
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.46 E-value=1.3 Score=45.31 Aligned_cols=197 Identities=20% Similarity=0.223 Sum_probs=101.3
Q ss_pred eEEEEECCCCCEEEEE-eCCC----cEEEEecCCceEEeeecccCCCeEEEEEcCCCCEEEEEeCCC-----------cE
Q 009715 282 INSIAFSTDGTYLATV-GRDG----YLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDD-----------LV 345 (528)
Q Consensus 282 v~~l~~spdg~~l~s~-~~dg----~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~sg~~dg-----------~v 345 (528)
+..+.++||+++||.+ +..| .|+++|+++++.+...... .....+.|.+|++.|+-...+. .|
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~-~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v 204 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN-PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV 204 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE-EESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc-cccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence 4467899999998876 3334 5999999999877543211 1122399999988766554332 37
Q ss_pred EEEECCCCeE--EEEeecC--CCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCC---CeEEEEEccCC-----eEEEE
Q 009715 346 QVWSMEDRKV--VAWGEGH--NSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQD---TRLLLWDLEMD-----EIVVP 413 (528)
Q Consensus 346 ~vwd~~~~~~--~~~~~~h--~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D---~~i~lwd~~~~-----~~~~~ 413 (528)
+.|.+.+... ...++.. ..+...+..++ |++ .+++..... ..|.+.|+..+ .....
T Consensus 205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~-------d~~-----~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l 272 (414)
T PF02897_consen 205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSK-------DGR-----YLFISSSSGTSESEVYLLDLDDGGSPDAKPKLL 272 (414)
T ss_dssp EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-T-------TSS-----EEEEEEESSSSEEEEEEEECCCTTTSS-SEEEE
T ss_pred EEEECCCChHhCeeEEeecCCCcEEEEEEecC-------ccc-----EEEEEEEccccCCeEEEEeccccCCCcCCcEEE
Confidence 8888876532 2333332 22366788888 883 344444433 45777788764 22222
Q ss_pred eecCCCCCCCeecCCCCCccCCceeee--ecCCCCceeeecCCCCc---eEEeecCCC--CeEEEEEeCCeEE-EEECCC
Q 009715 414 LRRGPLGGSPTFSTGSQSAHWDNVCPV--GTLQPAPSMRDVPKLSP---LVAHRVHTE--PLSGLIFTQESVL-TVCREG 485 (528)
Q Consensus 414 ~~~~~~~~~~~~s~~~~~~~~d~~~~~--g~~~~~~~~~d~~~~~~---~~~~~~h~~--~V~~l~~s~d~l~-t~s~Dg 485 (528)
..............++. -.+.. +.....+...++..... ...+..|.. .+..+....+.|+ .--.++
T Consensus 273 ~~~~~~~~~~v~~~~~~-----~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~ 347 (414)
T PF02897_consen 273 SPREDGVEYYVDHHGDR-----LYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENG 347 (414)
T ss_dssp EESSSS-EEEEEEETTE-----EEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETT
T ss_pred eCCCCceEEEEEccCCE-----EEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECC
Confidence 22111111111111110 00011 11122233334444332 224445555 5777777777744 444554
Q ss_pred --eEEEEeCC-CCc
Q 009715 486 --HIKIWMRP-GVA 496 (528)
Q Consensus 486 --~i~iW~~~-~~~ 496 (528)
.|+++++. +..
T Consensus 348 ~~~l~v~~~~~~~~ 361 (414)
T PF02897_consen 348 SSRLRVYDLDDGKE 361 (414)
T ss_dssp EEEEEEEETT-TEE
T ss_pred ccEEEEEECCCCcE
Confidence 48889998 444
No 371
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.35 E-value=0.018 Score=62.34 Aligned_cols=105 Identities=21% Similarity=0.290 Sum_probs=77.7
Q ss_pred CCCEEEEEeCCCcEEEEecCCc-eEEeeecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCeEE
Q 009715 290 DGTYLATVGRDGYLRVFDYSKE-QLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSG 368 (528)
Q Consensus 290 dg~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~ 368 (528)
.+..++.|+..|.+...|+... .....-..-.++|.+++|+.+|+.++.|-.+|.|.+||+..++.++.+..|..++++
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~ 177 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG 177 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence 4567899999999999988743 111222334579999999999999999999999999999999999988888877777
Q ss_pred EEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEcc
Q 009715 369 VAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLE 406 (528)
Q Consensus 369 v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~ 406 (528)
+-+.-+. +++ ..++++..-|. +|.+.
T Consensus 178 vi~v~~t----~~n------S~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 178 VIFVGRT----SQN------SKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred EEEEEEe----CCC------cEEEEccCCCc--eEEEE
Confidence 6664420 133 45677666665 66543
No 372
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.27 E-value=1.1 Score=42.72 Aligned_cols=162 Identities=17% Similarity=0.209 Sum_probs=88.9
Q ss_pred CCCCeEEEEecCCcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCC
Q 009715 166 KDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGA 245 (528)
Q Consensus 166 ~~~~~l~~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~ 245 (528)
..++.|++|+.+| |+++++... .... .. .+...|..+...|+-+ .|++-+ |+.++++++..-..
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~-----~~~~---~i-----~~~~~I~ql~vl~~~~-~llvLs-d~~l~~~~L~~l~~ 68 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDP-----SKPT---RI-----LKLSSITQLSVLPELN-LLLVLS-DGQLYVYDLDSLEP 68 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCC-----ccce---eE-----eecceEEEEEEecccC-EEEEEc-CCccEEEEchhhcc
Confidence 4678899999999 999998320 0010 00 1344599999999887 444443 59999999875322
Q ss_pred CCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEE--ECCCCCEEEEEeCCCcEEEEecCCc-----eEEeeec
Q 009715 246 GDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIA--FSTDGTYLATVGRDGYLRVFDYSKE-----QLICGGK 318 (528)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~--~spdg~~l~s~~~dg~i~vwd~~~~-----~~~~~~~ 318 (528)
.....+...... .....--.....+..++ -...+...+.......|.+|..... +..+.+.
T Consensus 69 ~~~~~~~~~~~~------------~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~ 136 (275)
T PF00780_consen 69 VSTSAPLAFPKS------------RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS 136 (275)
T ss_pred cccccccccccc------------ccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE
Confidence 211100000000 00000000112333333 1123333333444458888887642 3444443
Q ss_pred ccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEe
Q 009715 319 SYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWG 359 (528)
Q Consensus 319 ~~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~~~~~~ 359 (528)
....+..++|. ++.++.|..+ ...+.|+.++.....+
T Consensus 137 -lp~~~~~i~~~--~~~i~v~~~~-~f~~idl~~~~~~~l~ 173 (275)
T PF00780_consen 137 -LPDPPSSIAFL--GNKICVGTSK-GFYLIDLNTGSPSELL 173 (275)
T ss_pred -cCCCcEEEEEe--CCEEEEEeCC-ceEEEecCCCCceEEe
Confidence 45788899998 5567777655 4778999977554433
No 373
>PHA02713 hypothetical protein; Provisional
Probab=96.23 E-value=0.13 Score=54.73 Aligned_cols=93 Identities=8% Similarity=-0.044 Sum_probs=50.1
Q ss_pred cEEEEecCCceEEeeecccCCCeEEEEEcCCCCEEEEEeCC------CcEEEEECCC-Ce--EEEEeecCCCCeEEEEEe
Q 009715 302 YLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGED------DLVQVWSMED-RK--VVAWGEGHNSWVSGVAFD 372 (528)
Q Consensus 302 ~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~sg~~d------g~v~vwd~~~-~~--~~~~~~~h~~~V~~v~f~ 372 (528)
.+..||..+.+-...-.-.......-...-++++.+.|+.+ ..+..||.++ .+ .+..+.........+.+
T Consensus 433 ~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~- 511 (557)
T PHA02713 433 KVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH- 511 (557)
T ss_pred eEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE-
Confidence 46778887654321111011111111122357777777654 2467899886 33 33444333334444444
Q ss_pred cCCCCCCCCCCccceeEEEEEEeCCC--eEEEEEccCCe
Q 009715 373 SYWSQPNSDGTAETVMYRFGSVGQDT--RLLLWDLEMDE 409 (528)
Q Consensus 373 p~~~~~~~dg~~~~~~~~l~s~s~D~--~i~lwd~~~~~ 409 (528)
+| .+.+.|+.|+ .+..||..+.+
T Consensus 512 --------~~------~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 512 --------DN------TIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred --------CC------EEEEEeeecceeehhhcCccccc
Confidence 56 7889999888 66667766654
No 374
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.21 E-value=1.2 Score=44.00 Aligned_cols=71 Identities=17% Similarity=0.161 Sum_probs=41.0
Q ss_pred CceEEeecCCCCeEEEEEeCC--------eEEEEE-CCCeEEEEeCCCCc-----cccC-CCccce--EEEccCCceEEE
Q 009715 456 SPLVAHRVHTEPLSGLIFTQE--------SVLTVC-REGHIKIWMRPGVA-----ESQS-SSSETV--LSTSSKDKPLLS 518 (528)
Q Consensus 456 ~~~~~~~~h~~~V~~l~~s~d--------~l~t~s-~Dg~i~iW~~~~~~-----~~~~-~~~~~v--l~~spd~~~l~s 518 (528)
.|+..+..| ..+..+.|-.. .++.+. ..+.|....+.... +... .....+ +++.|||...++
T Consensus 244 ~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~ 322 (331)
T PF07995_consen 244 PPVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVS 322 (331)
T ss_dssp --SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEE
T ss_pred ccceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEE
Confidence 466666555 56778887642 255555 45677777775332 1111 223234 888999999998
Q ss_pred eeeeccccc
Q 009715 519 SKVVTSSYR 527 (528)
Q Consensus 519 ~~~~gs~~~ 527 (528)
...+|.+||
T Consensus 323 ~d~~G~iyR 331 (331)
T PF07995_consen 323 DDSDGKIYR 331 (331)
T ss_dssp E-TTTTEEE
T ss_pred ECCCCeEeC
Confidence 888899886
No 375
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.20 E-value=0.25 Score=49.73 Aligned_cols=122 Identities=19% Similarity=0.190 Sum_probs=81.6
Q ss_pred CCCeEEEeecCCCeEEEEECCCCC-------EEEEEeCCCcEEEEecCCceE--Eeeeccc----CCCeEEEEEcCCCCE
Q 009715 269 SNPIARWHICQGSINSIAFSTDGT-------YLATVGRDGYLRVFDYSKEQL--ICGGKSY----YGALLCCAWSMDGKY 335 (528)
Q Consensus 269 ~~~~~~~~~h~~~v~~l~~spdg~-------~l~s~~~dg~i~vwd~~~~~~--~~~~~~~----~~~v~~l~~sp~g~~ 335 (528)
...+..|..|.. |+-+.+.|+.+ .-+.|-.|..|.-||.+-... +....+| .....|.+-..+| +
T Consensus 366 GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~sG-~ 443 (644)
T KOG2395|consen 366 GKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATTESG-Y 443 (644)
T ss_pred ceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccccccccceeeecCCc-e
Confidence 456778888776 78888888643 234566778899999873221 2111222 2345566655566 7
Q ss_pred EEEEeCCCcEEEEECCCCeEEEEeecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEcc
Q 009715 336 ILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLE 406 (528)
Q Consensus 336 l~sg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~ 406 (528)
+++|+.+|.|++||--..+...-+.+...+|..|..+. || .+|+.. .+..+.+-|+.
T Consensus 444 IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvta-------dG------Kwil~T-c~tyLlLi~t~ 500 (644)
T KOG2395|consen 444 IVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTA-------DG------KWILAT-CKTYLLLIDTL 500 (644)
T ss_pred EEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeec-------cC------cEEEEe-cccEEEEEEEe
Confidence 99999999999999633333445667888999999988 99 454443 46677777754
No 376
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.20 E-value=0.8 Score=44.39 Aligned_cols=212 Identities=14% Similarity=0.032 Sum_probs=112.7
Q ss_pred EEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCCCCEEE
Q 009715 216 VTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLA 295 (528)
Q Consensus 216 l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~ 295 (528)
-.|.++...++.+--..+.|.-|+..+.. ...|... +.+.++..-.++..|+
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~---------------------------~~~~~~p-~~~~~~~~~d~~g~Lv 81 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGK---------------------------KRVFPSP-GGFSSGALIDAGGRLI 81 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCc---------------------------eEEEECC-CCcccceeecCCCeEE
Confidence 35777776556666667788888776421 1112111 2233333333344555
Q ss_pred EEeCCCcEEEEecCCceEEeeecc-----cCCCeEEEEEcCCCCEEEEEeC-----------CCcEEEEECCCCeEEEEe
Q 009715 296 TVGRDGYLRVFDYSKEQLICGGKS-----YYGALLCCAWSMDGKYILTGGE-----------DDLVQVWSMEDRKVVAWG 359 (528)
Q Consensus 296 s~~~dg~i~vwd~~~~~~~~~~~~-----~~~~v~~l~~sp~g~~l~sg~~-----------dg~v~vwd~~~~~~~~~~ 359 (528)
++.. -+.+++.+++..+..+.. -....+.+...|+|.+.++... -|.|+.+|. .+..+..+
T Consensus 82 ~~~~--g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~ 158 (307)
T COG3386 82 ACEH--GVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLL 158 (307)
T ss_pred EEcc--ccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEee
Confidence 5533 366677766655322211 1134567888999987665433 123444443 46666666
Q ss_pred ecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccC--CeEEE---EeecCCCCCCCeecCCCCCccC
Q 009715 360 EGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEM--DEIVV---PLRRGPLGGSPTFSTGSQSAHW 434 (528)
Q Consensus 360 ~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~--~~~~~---~~~~~~~~~~~~~s~~~~~~~~ 434 (528)
..|-..-+.|+|+| ||+ .++++-+..+.|.-|++.. +.... .+.... ..-.+++....-
T Consensus 159 ~~~~~~~NGla~Sp-------Dg~-----tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~----~~G~PDG~~vDa 222 (307)
T COG3386 159 DDDLTIPNGLAFSP-------DGK-----TLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDE----EPGLPDGMAVDA 222 (307)
T ss_pred cCcEEecCceEECC-------CCC-----EEEEEeCCCCeEEEEecCcccCccCCcceEEEccC----CCCCCCceEEeC
Confidence 66666678999999 983 4555556668888888763 11100 000000 011122222222
Q ss_pred Cceee-eecCC-CCceeeecCCCCceEEeecCCCCeEEEEEeC
Q 009715 435 DNVCP-VGTLQ-PAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQ 475 (528)
Q Consensus 435 d~~~~-~g~~~-~~~~~~d~~~~~~~~~~~~h~~~V~~l~~s~ 475 (528)
+..+= ..... ..+..++.. ++++..+..+...+++++|--
T Consensus 223 dG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG 264 (307)
T COG3386 223 DGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGG 264 (307)
T ss_pred CCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeC
Confidence 22221 11112 256666655 777777777767788888865
No 377
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.17 E-value=0.75 Score=44.55 Aligned_cols=171 Identities=16% Similarity=0.204 Sum_probs=93.9
Q ss_pred CeEEEEecCCcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCC
Q 009715 169 HDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDS 248 (528)
Q Consensus 169 ~~l~~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~ 248 (528)
..+.+-+.||.+....+...-+.. .+. ...|..+ +...+..-++...+. .++--+.+|.|+-.|+..+.. .
T Consensus 148 ~~F~~lC~DGsl~~v~Ld~~Gk~~-~~~--t~~F~~~---~dp~f~~~~~~~~~~-~~~F~Sy~G~v~~~dlsg~~~--~ 218 (342)
T PF06433_consen 148 RGFSMLCGDGSLLTVTLDADGKEA-QKS--TKVFDPD---DDPLFEHPAYSRDGG-RLYFVSYEGNVYSADLSGDSA--K 218 (342)
T ss_dssp TEEEEEETTSCEEEEEETSTSSEE-EEE--EEESSTT---TS-B-S--EEETTTT-EEEEEBTTSEEEEEEETTSSE--E
T ss_pred CceEEEecCCceEEEEECCCCCEe-Eee--ccccCCC---CcccccccceECCCC-eEEEEecCCEEEEEeccCCcc--c
Confidence 457778889999998887532221 111 1122221 222223445555555 566678899999998875321 0
Q ss_pred ccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCCCCEEEEEeC---C-------CcEEEEecCCceEEeeec
Q 009715 249 SFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGR---D-------GYLRVFDYSKEQLICGGK 318 (528)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~~~---d-------g~i~vwd~~~~~~~~~~~ 318 (528)
....+. +. ...+.-..|.- +.-.-+++++..++|++--. + ..|.++|+.+++.+..+.
T Consensus 219 ~~~~~~------~~----t~~e~~~~WrP--GG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~ 286 (342)
T PF06433_consen 219 FGKPWS------LL----TDAEKADGWRP--GGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIP 286 (342)
T ss_dssp EEEEEE------SS-----HHHHHTTEEE---SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEE
T ss_pred ccCccc------cc----CccccccCcCC--cceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEe
Confidence 000000 00 00000001111 33445777775555544211 1 158999999999998876
Q ss_pred ccCCCeEEEEEcCCCC-EEEEE-eCCCcEEEEECCCCeEEEEeec
Q 009715 319 SYYGALLCCAWSMDGK-YILTG-GEDDLVQVWSMEDRKVVAWGEG 361 (528)
Q Consensus 319 ~~~~~v~~l~~sp~g~-~l~sg-~~dg~v~vwd~~~~~~~~~~~~ 361 (528)
. ..++.+|+.+.+.+ +|+.. ..++.+.+||..+++.++.+..
T Consensus 287 l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 287 L-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp E-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred C-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 3 34677899998766 55544 4588999999999999988873
No 378
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.08 E-value=0.4 Score=47.09 Aligned_cols=110 Identities=17% Similarity=0.197 Sum_probs=70.4
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEEEecCCce-EEeeecc-cCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC-CeE
Q 009715 279 QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQ-LICGGKS-YYGALLCCAWSMDGKYILTGGEDDLVQVWSMED-RKV 355 (528)
Q Consensus 279 ~~~v~~l~~spdg~~l~s~~~dg~i~vwd~~~~~-~~~~~~~-~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~-~~~ 355 (528)
.++|++++-- ++ +|+.+. +..|.+|++...+ ....-.- ....+.++.. .+.++++|.....+.++..+. .+.
T Consensus 88 ~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~--~~~~I~vgD~~~sv~~~~~~~~~~~ 162 (321)
T PF03178_consen 88 KGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV--FKNYILVGDAMKSVSLLRYDEENNK 162 (321)
T ss_dssp SS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE--ETTEEEEEESSSSEEEEEEETTTE-
T ss_pred cCcceEhhhh-CC-EEEEee-cCEEEEEEccCcccchhhheecceEEEEEEec--cccEEEEEEcccCEEEEEEEccCCE
Confidence 5889888866 34 455544 4789999998777 4433221 1224555544 466999999888888885543 222
Q ss_pred EEEee--cCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEcc
Q 009715 356 VAWGE--GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLE 406 (528)
Q Consensus 356 ~~~~~--~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~ 406 (528)
+..+. ....+++++.|-+ |+ ..++.+..+|.|.++...
T Consensus 163 l~~va~d~~~~~v~~~~~l~-------d~------~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 163 LILVARDYQPRWVTAAEFLV-------DE------DTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp EEEEEEESS-BEEEEEEEE--------SS------SEEEEEETTSEEEEEEE-
T ss_pred EEEEEecCCCccEEEEEEec-------CC------cEEEEEcCCCeEEEEEEC
Confidence 22222 2456799999986 65 378899999999998875
No 379
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.05 E-value=0.018 Score=38.28 Aligned_cols=32 Identities=31% Similarity=0.646 Sum_probs=29.0
Q ss_pred cCCceeEEEEeeCCCcEEEEEeCCceEEEEEcC
Q 009715 209 NNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKS 241 (528)
Q Consensus 209 h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~ 241 (528)
....|.+++|+|..+ +||.+..||.|.+|.++
T Consensus 10 l~~~v~~~~w~P~md-LiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMD-LIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCCcEEEEEECCCCC-EEEEEECCCeEEEEECC
Confidence 345699999999999 99999999999999984
No 380
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.04 E-value=2 Score=43.67 Aligned_cols=84 Identities=15% Similarity=0.048 Sum_probs=55.4
Q ss_pred EECCCCCEEEEEeCCCcEEEEecCCceEEeeecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecC-CC
Q 009715 286 AFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGH-NS 364 (528)
Q Consensus 286 ~~spdg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~~~~~~~~h-~~ 364 (528)
.++.+....+....++.+.+.+-...+. +. ..+++..++.||+++++|.-..+|.+.|.+.+-.+.+..+.-. ..
T Consensus 185 ~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~ 260 (410)
T PF04841_consen 185 LLSSDRVVEILLANGETIYIIDENSFKQ---ID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKS 260 (410)
T ss_pred EeecCcceEEEEecCCEEEEEEcccccc---cc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCC
Confidence 3444555555555556666444332211 22 2468999999999999999999999999987766666666533 34
Q ss_pred CeEEEEEec
Q 009715 365 WVSGVAFDS 373 (528)
Q Consensus 365 ~V~~v~f~p 373 (528)
....+.|+-
T Consensus 261 ~p~~~~WCG 269 (410)
T PF04841_consen 261 PPKQMAWCG 269 (410)
T ss_pred CCcEEEEEC
Confidence 556777765
No 381
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.77 E-value=0.03 Score=37.16 Aligned_cols=33 Identities=24% Similarity=0.441 Sum_probs=29.3
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe
Q 009715 321 YGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRK 354 (528)
Q Consensus 321 ~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~ 354 (528)
...|.+++|+|...+||.+..||.|.+|.+ +++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence 456999999999999999999999999998 443
No 382
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=95.71 E-value=2.9 Score=42.72 Aligned_cols=200 Identities=16% Similarity=0.187 Sum_probs=105.0
Q ss_pred CCCCCeEEEEec-CC----cEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeCC-------
Q 009715 165 AKDGHDLLIGLN-SG----DVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHAD------- 232 (528)
Q Consensus 165 ~~~~~~l~~g~~-~G----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~d------- 232 (528)
+|++++|+.+.. .| .|+++|+.+. +.+.... .......+.|.++++.++.+...+
T Consensus 132 Spdg~~la~~~s~~G~e~~~l~v~Dl~tg-----~~l~d~i--------~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~ 198 (414)
T PF02897_consen 132 SPDGKRLAYSLSDGGSEWYTLRVFDLETG-----KFLPDGI--------ENPKFSSVSWSDDGKGFFYTRFDEDQRTSDS 198 (414)
T ss_dssp TTTSSEEEEEEEETTSSEEEEEEEETTTT-----EEEEEEE--------EEEESEEEEECTTSSEEEEEECSTTTSS-CC
T ss_pred CCCCCEEEEEecCCCCceEEEEEEECCCC-----cCcCCcc--------cccccceEEEeCCCCEEEEEEeCcccccccC
Confidence 688888887654 33 5888998872 1211111 111223499999998555555333
Q ss_pred ---ceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCC--eEEEEECCCCCEEEEEeCC----CcE
Q 009715 233 ---GNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGS--INSIAFSTDGTYLATVGRD----GYL 303 (528)
Q Consensus 233 ---g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~--v~~l~~spdg~~l~s~~~d----g~i 303 (528)
..|+.|++.+... .....+...... ...+..++|+++|+..... ..+
T Consensus 199 ~~~~~v~~~~~gt~~~------------------------~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v 254 (414)
T PF02897_consen 199 GYPRQVYRHKLGTPQS------------------------EDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEV 254 (414)
T ss_dssp GCCEEEEEEETTS-GG------------------------G-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEE
T ss_pred CCCcEEEEEECCCChH------------------------hCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeE
Confidence 2367777764211 111222222222 5678889999988765432 357
Q ss_pred EEEecCCc-----eEEeeecccCCCeEEEEEcCCCCEEEEEeC---CCcEEEEECCCCeE---EEEeecCCC--CeEEEE
Q 009715 304 RVFDYSKE-----QLICGGKSYYGALLCCAWSMDGKYILTGGE---DDLVQVWSMEDRKV---VAWGEGHNS--WVSGVA 370 (528)
Q Consensus 304 ~vwd~~~~-----~~~~~~~~~~~~v~~l~~sp~g~~l~sg~~---dg~v~vwd~~~~~~---~~~~~~h~~--~V~~v~ 370 (528)
.+.|+..+ +.........+....+... .+.+++.... ++.|.-.++..... ...+..|.. .+..+.
T Consensus 255 ~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~ 333 (414)
T PF02897_consen 255 YLLDLDDGGSPDAKPKLLSPREDGVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVS 333 (414)
T ss_dssp EEEECCCTTTSS-SEEEEEESSSS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEE
T ss_pred EEEeccccCCCcCCcEEEeCCCCceEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEE
Confidence 88888764 2332222222333334433 4444444432 45677778877542 224444655 355555
Q ss_pred EecCCCCCCCCCCccceeEEEEEEeCCC--eEEEEEccCCeEEEEeec
Q 009715 371 FDSYWSQPNSDGTAETVMYRFGSVGQDT--RLLLWDLEMDEIVVPLRR 416 (528)
Q Consensus 371 f~p~~~~~~~dg~~~~~~~~l~s~s~D~--~i~lwd~~~~~~~~~~~~ 416 (528)
... + ++++....++ .|+++|+..+.....+..
T Consensus 334 ~~~--------~------~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~ 367 (414)
T PF02897_consen 334 LFK--------D------YLVLSYRENGSSRLRVYDLDDGKESREIPL 367 (414)
T ss_dssp EET--------T------EEEEEEEETTEEEEEEEETT-TEEEEEEES
T ss_pred EEC--------C------EEEEEEEECCccEEEEEECCCCcEEeeecC
Confidence 432 2 5677776665 578888884455555443
No 383
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.61 E-value=0.045 Score=49.14 Aligned_cols=106 Identities=17% Similarity=0.155 Sum_probs=65.8
Q ss_pred CCEEEEEeCCCcEEEEecCCceEEeee-cccCCCeEE-EEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCC-CCeE
Q 009715 291 GTYLATVGRDGYLRVFDYSKEQLICGG-KSYYGALLC-CAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHN-SWVS 367 (528)
Q Consensus 291 g~~l~s~~~dg~i~vwd~~~~~~~~~~-~~~~~~v~~-l~~sp~g~~l~sg~~dg~v~vwd~~~~~~~~~~~~h~-~~V~ 367 (528)
+..+++|+.+|.|.+|+.......... ..-...|.+ |.--.++.+..+++.|+.|+.|+..-.+.+...-.|. .++.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e 149 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE 149 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence 557999999999999988732221111 111222322 2222345578899999999999999888877776676 4444
Q ss_pred EEEEecCCCCCCCCCCccceeEEEEEE--eCCCeEEEEEccCCe
Q 009715 368 GVAFDSYWSQPNSDGTAETVMYRFGSV--GQDTRLLLWDLEMDE 409 (528)
Q Consensus 368 ~v~f~p~~~~~~~dg~~~~~~~~l~s~--s~D~~i~lwd~~~~~ 409 (528)
.+.... .+ ..+... |.|..++.|++..-.
T Consensus 150 ~~ivv~-------sd------~~i~~a~~S~d~~~k~W~ve~~~ 180 (238)
T KOG2444|consen 150 ELIVVG-------SD------EFLKIADTSHDRVLKKWNVEKIK 180 (238)
T ss_pred eeEEec-------CC------ceEEeeccccchhhhhcchhhhh
Confidence 444333 22 355555 677777777765433
No 384
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.59 E-value=0.18 Score=50.68 Aligned_cols=132 Identities=14% Similarity=0.136 Sum_probs=92.5
Q ss_pred EEEEEEeCCCeEEEEEccCCeEEEEeecCCCCCCCeecCCCCCccC-CceeeeecCCCCceeeecCCCC--ceEEeecCC
Q 009715 389 YRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHW-DNVCPVGTLQPAPSMRDVPKLS--PLVAHRVHT 465 (528)
Q Consensus 389 ~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~-d~~~~~g~~~~~~~~~d~~~~~--~~~~~~~h~ 465 (528)
.+|.++.....|+--|+..|+.+........+..+.+.++...... .....+|-.+..++.||.+... .+...++|.
T Consensus 347 lil~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kq 426 (644)
T KOG2395|consen 347 LILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQ 426 (644)
T ss_pred eEeeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccc
Confidence 4566777778888899999999999988777777888877753332 2333677778889999987433 233333442
Q ss_pred ----CCeEEEEEeCCe-EEEEECCCeEEEEeCCCCc--cccCCCccce--EEEccCCceEEEee
Q 009715 466 ----EPLSGLIFTQES-VLTVCREGHIKIWMRPGVA--ESQSSSSETV--LSTSSKDKPLLSSK 520 (528)
Q Consensus 466 ----~~V~~l~~s~d~-l~t~s~Dg~i~iW~~~~~~--~~~~~~~~~v--l~~spd~~~l~s~~ 520 (528)
....|.+-..++ |+.||.+|.||+||.-... ....+..+.| +.++.||++|+..+
T Consensus 427 y~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc 490 (644)
T KOG2395|consen 427 YSTKNNFSCFATTESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC 490 (644)
T ss_pred cccccccceeeecCCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec
Confidence 234566666665 9999999999999974332 3334556666 88899999987553
No 385
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.57 E-value=0.046 Score=59.29 Aligned_cols=99 Identities=19% Similarity=0.382 Sum_probs=71.6
Q ss_pred EEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCCCCEEEEEeCCCcEE
Q 009715 225 AFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLR 304 (528)
Q Consensus 225 ~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~~~dg~i~ 304 (528)
.++.|+..|.|-..|.... .. +.+.+ ..-+++|++++|+.+|..++.|-.+|.|.
T Consensus 101 ~ivi~Ts~ghvl~~d~~~n--L~---~~~~n--------------------e~v~~~Vtsvafn~dg~~l~~G~~~G~V~ 155 (1206)
T KOG2079|consen 101 PIVIGTSHGHVLLSDMTGN--LG---PLHQN--------------------ERVQGPVTSVAFNQDGSLLLAGLGDGHVT 155 (1206)
T ss_pred eEEEEcCchhhhhhhhhcc--cc---hhhcC--------------------CccCCcceeeEecCCCceeccccCCCcEE
Confidence 6888888899988887631 00 00000 01148999999999999999999999999
Q ss_pred EEecCCceEEeeecccCCCe---EEEEEcCCCCEEEEEeCCCcEEEEEC
Q 009715 305 VFDYSKEQLICGGKSYYGAL---LCCAWSMDGKYILTGGEDDLVQVWSM 350 (528)
Q Consensus 305 vwd~~~~~~~~~~~~~~~~v---~~l~~sp~g~~l~sg~~dg~v~vwd~ 350 (528)
+||...++.++.+..|..+. ..+.|..++..++++...|. +|.+
T Consensus 156 v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 156 VWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred EEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 99999999888877665544 44455556667778777775 5554
No 386
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.44 E-value=0.2 Score=54.86 Aligned_cols=146 Identities=18% Similarity=0.167 Sum_probs=90.3
Q ss_pred CCCCCeEEEEec-CC-cEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCC
Q 009715 165 AKDGHDLLIGLN-SG-DVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSK 242 (528)
Q Consensus 165 ~~~~~~l~~g~~-~G-~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~ 242 (528)
.+|....++-.. +| -|+.||++.-......... .+.......-...-..++.|+|.=.-..++...|+.|+|..+..
T Consensus 109 ~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~-pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~ 187 (1405)
T KOG3630|consen 109 FHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTV-PLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQ 187 (1405)
T ss_pred ccCCceEEEEEecCCceEEEEehHhhhhhhhhhcc-ccccccchhccccccccccccCCccchhhhhccccchhhhhhhh
Confidence 456666554433 33 6888999863222111100 00011111113345678999998765678888999999988764
Q ss_pred CCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCCCCEEEEEeCCCcEEEEecCCceEEeeecc---
Q 009715 243 DGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKS--- 319 (528)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~~~dg~i~vwd~~~~~~~~~~~~--- 319 (528)
.......++. ....+|++|+|.|+.++.|-..|++.-|... .+....+.+
T Consensus 188 ~~~~v~s~p~--------------------------t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~ 240 (1405)
T KOG3630|consen 188 LAQNVTSFPV--------------------------TNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPV 240 (1405)
T ss_pred hhhhhcccCc--------------------------ccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCc
Confidence 2221111111 3578899999999999999999999988765 332222211
Q ss_pred c-CCCeEEEEEcCCCCEEEE
Q 009715 320 Y-YGALLCCAWSMDGKYILT 338 (528)
Q Consensus 320 ~-~~~v~~l~~sp~g~~l~s 338 (528)
. ...|.+|+|-....++++
T Consensus 241 ~e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 241 EENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred CCCcceeEEEEecceeEEEE
Confidence 1 467999999877777665
No 387
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=95.41 E-value=2.6 Score=42.18 Aligned_cols=201 Identities=16% Similarity=0.191 Sum_probs=87.9
Q ss_pred CCCCeEEEEe-cCCcEEEEEccccccccc--cceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEE--eCC----ceEE
Q 009715 166 KDGHDLLIGL-NSGDVYSVSLRQQLQDVG--KKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVG--HAD----GNLY 236 (528)
Q Consensus 166 ~~~~~l~~g~-~~G~v~iwd~~~~~~~~~--~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg--~~d----g~v~ 236 (528)
.+.++|++.+ .++.|+++|+.+....+. |.+.....+.+.+. ..-..+-.-|+|+ +++++ ..+ |-+.
T Consensus 85 ~~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~---s~PHT~Hclp~G~-imIS~lGd~~G~g~Ggf~ 160 (461)
T PF05694_consen 85 KERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGL---SRPHTVHCLPDGR-IMISALGDADGNGPGGFV 160 (461)
T ss_dssp --S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-E---EEEEEEEE-SS---EEEEEEEETTS-S--EEE
T ss_pred ccCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCC---CCCceeeecCCcc-EEEEeccCCCCCCCCcEE
Confidence 4567776654 788999999986322111 11110000001111 1222344456887 77774 232 4566
Q ss_pred EEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeec---CCCeEEEEECCCCCEEEEEe---------------
Q 009715 237 VYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHIC---QGSINSIAFSTDGTYLATVG--------------- 298 (528)
Q Consensus 237 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h---~~~v~~l~~spdg~~l~s~~--------------- 298 (528)
++|-++ .+....|... ..--+.+-|.|..+.+++..
T Consensus 161 llD~~t--------------------------f~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d 214 (461)
T PF05694_consen 161 LLDGET--------------------------FEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPED 214 (461)
T ss_dssp EE-TTT----------------------------EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTT
T ss_pred EEcCcc--------------------------ccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhH
Confidence 666543 2233334332 13345677788777777752
Q ss_pred -----CCCcEEEEecCCceEEeeecccC--CCeEEEEEcCC--CCEEEEE-eCCCcEEEEEC-CCCe----EEEEeec--
Q 009715 299 -----RDGYLRVFDYSKEQLICGGKSYY--GALLCCAWSMD--GKYILTG-GEDDLVQVWSM-EDRK----VVAWGEG-- 361 (528)
Q Consensus 299 -----~dg~i~vwd~~~~~~~~~~~~~~--~~v~~l~~sp~--g~~l~sg-~~dg~v~vwd~-~~~~----~~~~~~~-- 361 (528)
....+.+||+.+.+.++.+.--. ...+.|.|..+ ..+=+++ -....|..|-- +.++ .+..+..
T Consensus 215 ~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~ 294 (461)
T PF05694_consen 215 LEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKK 294 (461)
T ss_dssp HHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE
T ss_pred hhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcc
Confidence 23579999999999998876432 24566777554 4443333 23444544433 3332 2222211
Q ss_pred C---------------CCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCC
Q 009715 362 H---------------NSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMD 408 (528)
Q Consensus 362 h---------------~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~ 408 (528)
. ..-|+.|..+. |.+ ++.+++=.+|.|+.||+...
T Consensus 295 v~~~~lp~ml~~~~~~P~LitDI~iSl-------DDr-----fLYvs~W~~GdvrqYDISDP 344 (461)
T PF05694_consen 295 VEGWILPEMLKPFGAVPPLITDILISL-------DDR-----FLYVSNWLHGDVRQYDISDP 344 (461)
T ss_dssp --SS---GGGGGG-EE------EEE-T-------TS------EEEEEETTTTEEEEEE-SST
T ss_pred cCcccccccccccccCCCceEeEEEcc-------CCC-----EEEEEcccCCcEEEEecCCC
Confidence 1 23478888888 772 45566668999999999753
No 388
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.19 E-value=1.6 Score=41.20 Aligned_cols=135 Identities=20% Similarity=0.143 Sum_probs=78.3
Q ss_pred ceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCCC
Q 009715 212 RCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDG 291 (528)
Q Consensus 212 ~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spdg 291 (528)
.+...++++++..+.++...++.-.+|-...++...... -...+....|++++
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~---------------------------~g~~l~~PS~d~~g 77 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL---------------------------TGGSLTRPSWDPDG 77 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec---------------------------cCCccccccccCCC
Confidence 688999999998433444233333334333322211111 12467788999998
Q ss_pred CEEEEEeCCCcEEEEe-cCCceE--Eee-ecccCCCeEEEEEcCCCCEEEEEe---CCCcEEEEECC---CC------eE
Q 009715 292 TYLATVGRDGYLRVFD-YSKEQL--ICG-GKSYYGALLCCAWSMDGKYILTGG---EDDLVQVWSME---DR------KV 355 (528)
Q Consensus 292 ~~l~s~~~dg~i~vwd-~~~~~~--~~~-~~~~~~~v~~l~~sp~g~~l~sg~---~dg~v~vwd~~---~~------~~ 355 (528)
...+....+...+++. ..+++. +.. .....+.|..+.+||||..++.-. .++.|.|--+. .+ ..
T Consensus 78 ~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~ 157 (253)
T PF10647_consen 78 WVWTVDDGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGP 157 (253)
T ss_pred CEEEEEcCCCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccc
Confidence 7777766666666663 333322 211 111122899999999999877654 35677766543 22 12
Q ss_pred EEEeecCCCCeEEEEEec
Q 009715 356 VAWGEGHNSWVSGVAFDS 373 (528)
Q Consensus 356 ~~~~~~h~~~V~~v~f~p 373 (528)
+.........+.++.|.+
T Consensus 158 ~~~~~~~~~~v~~v~W~~ 175 (253)
T PF10647_consen 158 RRVAPPLLSDVTDVAWSD 175 (253)
T ss_pred eEecccccCcceeeeecC
Confidence 222223456899999998
No 389
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.15 E-value=2.8 Score=39.21 Aligned_cols=191 Identities=14% Similarity=0.093 Sum_probs=110.2
Q ss_pred CeEEEEECCCCCEEEEEeCCC--cEEEEecCCceEEeeeccc-CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEE
Q 009715 281 SINSIAFSTDGTYLATVGRDG--YLRVFDYSKEQLICGGKSY-YGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVA 357 (528)
Q Consensus 281 ~v~~l~~spdg~~l~s~~~dg--~i~vwd~~~~~~~~~~~~~-~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~~~~ 357 (528)
-...+.|..++.++-+.+.-| .|+.+|+.+++.+....-. .-.-..++.. +.++....-.++...+||.++.+.+.
T Consensus 46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~~~~ 124 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGFVYDPNTLKKIG 124 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEEEEEETTTTEEEE
T ss_pred cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeEEEEccccceEEE
Confidence 345788877888888888776 6999999999876554321 1122334444 33444455678999999999998888
Q ss_pred EeecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEEEeecCCCCCCCeecCCCCCccCCce
Q 009715 358 WGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNV 437 (528)
Q Consensus 358 ~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~d~~ 437 (528)
++. ....=..++. || ..|+.......|.++|..+.+....+..... +
T Consensus 125 ~~~-y~~EGWGLt~---------dg------~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~---------g-------- 171 (264)
T PF05096_consen 125 TFP-YPGEGWGLTS---------DG------KRLIMSDGSSRLYFLDPETFKEVRTIQVTDN---------G-------- 171 (264)
T ss_dssp EEE--SSS--EEEE---------CS------SCEEEE-SSSEEEEE-TTT-SEEEEEE-EET---------T--------
T ss_pred EEe-cCCcceEEEc---------CC------CEEEEECCccceEEECCcccceEEEEEEEEC---------C--------
Confidence 876 4445556664 55 2444444467899999888777666543100 0
Q ss_pred eeeecCCCCceeeecCCCCceEEeecCCCCeEEEEEeCCeEEEEE-CCCeE-EEEeCCCCccccC-----CCccce---E
Q 009715 438 CPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQESVLTVC-REGHI-KIWMRPGVAESQS-----SSSETV---L 507 (528)
Q Consensus 438 ~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~~s~d~l~t~s-~Dg~i-~iW~~~~~~~~~~-----~~~~~v---l 507 (528)
.....+..++-..+.|.+=.|..|.|+-.. ..|.| .+.|+..-..... .....| +
T Consensus 172 ---------------~pv~~LNELE~i~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGI 236 (264)
T PF05096_consen 172 ---------------RPVSNLNELEYINGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGI 236 (264)
T ss_dssp ---------------EE---EEEEEEETTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEE
T ss_pred ---------------EECCCcEeEEEEcCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeE
Confidence 011234455556777888888888766554 44554 4556544322111 112345 8
Q ss_pred EEccCCce-EEEee
Q 009715 508 STSSKDKP-LLSSK 520 (528)
Q Consensus 508 ~~spd~~~-l~s~~ 520 (528)
|..|+.+. +++|+
T Consensus 237 Ayd~~~~~l~vTGK 250 (264)
T PF05096_consen 237 AYDPETDRLFVTGK 250 (264)
T ss_dssp EEETTTTEEEEEET
T ss_pred eEeCCCCEEEEEeC
Confidence 88776654 45654
No 390
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=94.89 E-value=1.5 Score=44.09 Aligned_cols=135 Identities=17% Similarity=0.203 Sum_probs=70.2
Q ss_pred ceeEEEEeeCCCcEEEEEe-----------CCc-eEEEEEcCC-CCCCCCccccccccceeEEeccCCCCCCCeEEEeec
Q 009715 212 RCTSVTWVPGGDGAFVVGH-----------ADG-NLYVYEKSK-DGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHIC 278 (528)
Q Consensus 212 ~v~~l~~~p~g~~~l~tg~-----------~dg-~v~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 278 (528)
....|+|.++|. ++++-. ..+ .|.+++-.. ++.. .....+...
T Consensus 15 ~P~~ia~d~~G~-l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~-----------------------d~~~vfa~~ 70 (367)
T TIGR02604 15 NPIAVCFDERGR-LWVAEGITYSRPAGRQGPLGDRILILEDADGDGKY-----------------------DKSNVFAEE 70 (367)
T ss_pred CCceeeECCCCC-EEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCc-----------------------ceeEEeecC
Confidence 567899999998 555532 223 677776432 1211 111222222
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEEEecCC-------ceEE-eeecc----cCCCeEEEEEcCCCCEEEEEeCC----
Q 009715 279 QGSINSIAFSTDGTYLATVGRDGYLRVFDYSK-------EQLI-CGGKS----YYGALLCCAWSMDGKYILTGGED---- 342 (528)
Q Consensus 279 ~~~v~~l~~spdg~~l~s~~~dg~i~vwd~~~-------~~~~-~~~~~----~~~~v~~l~~sp~g~~l~sg~~d---- 342 (528)
-.....|+|.+++ +++ +.....+++.|... .+.+ ..+.. +......++|.|||.+.++-+..
T Consensus 71 l~~p~Gi~~~~~G-lyV-~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~ 148 (367)
T TIGR02604 71 LSMVTGLAVAVGG-VYV-ATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASK 148 (367)
T ss_pred CCCccceeEecCC-EEE-eCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCce
Confidence 2456789999988 444 44443333445431 1122 22222 12346789999999876654421
Q ss_pred ---------------CcEEEEECCCCeEEEEeecCCCCeEEEEEec
Q 009715 343 ---------------DLVQVWSMEDRKVVAWGEGHNSWVSGVAFDS 373 (528)
Q Consensus 343 ---------------g~v~vwd~~~~~~~~~~~~h~~~V~~v~f~p 373 (528)
+.|.-+|.+.++....-.++ .....++|+|
T Consensus 149 ~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~-rnp~Gl~~d~ 193 (367)
T TIGR02604 149 VTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGF-QNPYGHSVDS 193 (367)
T ss_pred eccCCCccCcccccCceEEEEecCCCeEEEEecCc-CCCccceECC
Confidence 34555555544432222233 2346789988
No 391
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=94.86 E-value=4.5 Score=40.08 Aligned_cols=99 Identities=14% Similarity=0.100 Sum_probs=43.8
Q ss_pred EEEeecCCCeEEEEECC-CCCEEEEEeCC---C-cEEEEecCC-ceEEeeecccCC-C-eEEEEEcCCCCEEEEE-----
Q 009715 273 ARWHICQGSINSIAFST-DGTYLATVGRD---G-YLRVFDYSK-EQLICGGKSYYG-A-LLCCAWSMDGKYILTG----- 339 (528)
Q Consensus 273 ~~~~~h~~~v~~l~~sp-dg~~l~s~~~d---g-~i~vwd~~~-~~~~~~~~~~~~-~-v~~l~~sp~g~~l~sg----- 339 (528)
+.+..-..-+.-+.|+| |...|+.|-.. . .-|||-+++ +...+.+..+.. . +.-=-|.|||..|.--
T Consensus 181 ~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~ 260 (386)
T PF14583_consen 181 KVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPG 260 (386)
T ss_dssp EEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETT
T ss_pred eEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCC
Confidence 33333445677899999 66666666431 1 135665532 333344443332 1 2223489999865532
Q ss_pred eCCCcEEEEECCCCeEEEEeecCCCCeEEEEEec
Q 009715 340 GEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDS 373 (528)
Q Consensus 340 ~~dg~v~vwd~~~~~~~~~~~~h~~~V~~v~f~p 373 (528)
+.+..|.-+|+.+++...... ..+...+.-++
T Consensus 261 ~~~~~i~~~d~~t~~~~~~~~--~p~~~H~~ss~ 292 (386)
T PF14583_consen 261 GQDFWIAGYDPDTGERRRLME--MPWCSHFMSSP 292 (386)
T ss_dssp T--EEEEEE-TTT--EEEEEE--E-SEEEEEE-T
T ss_pred CCceEEEeeCCCCCCceEEEe--CCceeeeEEcC
Confidence 234567788888876543222 23444445556
No 392
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=94.83 E-value=4.9 Score=40.33 Aligned_cols=197 Identities=11% Similarity=0.078 Sum_probs=88.8
Q ss_pred CCCCCEEEEEeC------CCcEEEEecCCceEEeeeccc---CCCeEEEEEcCCCCEEEEEeC-----------------
Q 009715 288 STDGTYLATVGR------DGYLRVFDYSKEQLICGGKSY---YGALLCCAWSMDGKYILTGGE----------------- 341 (528)
Q Consensus 288 spdg~~l~s~~~------dg~i~vwd~~~~~~~~~~~~~---~~~v~~l~~sp~g~~l~sg~~----------------- 341 (528)
-|+|..++++-. -|-+.++|-++.+.+...... ...-..+-|.|..+.+++...
T Consensus 138 lp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~ 217 (461)
T PF05694_consen 138 LPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEA 217 (461)
T ss_dssp -SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHH
T ss_pred cCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhc
Confidence 467888877532 245788888877776655432 233467888998888888642
Q ss_pred ---CCcEEEEECCCCeEEEEeecCC--CCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEc-cCCeEEEEee
Q 009715 342 ---DDLVQVWSMEDRKVVAWGEGHN--SWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDL-EMDEIVVPLR 415 (528)
Q Consensus 342 ---dg~v~vwd~~~~~~~~~~~~h~--~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~-~~~~~~~~~~ 415 (528)
...+.+||+.+++.++++.--. ..+..|.|.. |.. .. +-++.+....+|..|-- ..++-...-
T Consensus 218 ~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH-------~P~--~~-~gFvg~aLss~i~~~~k~~~g~W~a~k- 286 (461)
T PF05694_consen 218 GKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLH-------DPD--AN-YGFVGCALSSSIWRFYKDDDGEWAAEK- 286 (461)
T ss_dssp H-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-S-------STT-----EEEEEEE--EEEEEEEE-ETTEEEEEE-
T ss_pred ccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecC-------CCC--cc-ceEEEEeccceEEEEEEcCCCCeeeeE-
Confidence 2469999999999999987332 2355677754 221 11 34555556666666643 333311100
Q ss_pred cCCCCCCCeecCCCCCccCCceeeeecCCCCceeeecCCCCceEEeecCCCCeEEEEEeCC--eEE-EEECCCeEEEEeC
Q 009715 416 RGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE--SVL-TVCREGHIKIWMR 492 (528)
Q Consensus 416 ~~~~~~~~~~s~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~~s~d--~l~-t~s~Dg~i~iW~~ 492 (528)
.+.+.. ..+.-|.++.. +..+..-..-|++|..|.| +|. ++=.+|.||.||+
T Consensus 287 ---------------------Vi~ip~--~~v~~~~lp~m--l~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDI 341 (461)
T PF05694_consen 287 ---------------------VIDIPA--KKVEGWILPEM--LKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDI 341 (461)
T ss_dssp ---------------------EEEE----EE--SS---GG--GGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-
T ss_pred ---------------------EEECCC--cccCccccccc--ccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEec
Confidence 000000 00001111100 0001111345789999986 454 4448999999998
Q ss_pred CCCcc-ccC-----C-----------------CccceEEEccCCceEEEee
Q 009715 493 PGVAE-SQS-----S-----------------SSETVLSTSSKDKPLLSSK 520 (528)
Q Consensus 493 ~~~~~-~~~-----~-----------------~~~~vl~~spd~~~l~s~~ 520 (528)
..... .+. + .....+.+|-|||+|...+
T Consensus 342 SDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 342 SDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred CCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 64321 110 0 0112388999999998654
No 393
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.77 E-value=1.7 Score=40.89 Aligned_cols=160 Identities=17% Similarity=0.229 Sum_probs=100.0
Q ss_pred CceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCC
Q 009715 211 SRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTD 290 (528)
Q Consensus 211 ~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spd 290 (528)
..|.++.|+|+.+.+|++....-.|. .+.+.|.....+|...- ...-.|.|..+
T Consensus 86 ~nvS~LTynp~~rtLFav~n~p~~iV--Elt~~GdlirtiPL~g~------------------------~DpE~Ieyig~ 139 (316)
T COG3204 86 ANVSSLTYNPDTRTLFAVTNKPAAIV--ELTKEGDLIRTIPLTGF------------------------SDPETIEYIGG 139 (316)
T ss_pred ccccceeeCCCcceEEEecCCCceEE--EEecCCceEEEeccccc------------------------CChhHeEEecC
Confidence 34999999999994555554443333 33444555444442211 22335777777
Q ss_pred CCEEEEEeCCCcEEEEecCCceEEeee---------ccc-CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe-E--EE
Q 009715 291 GTYLATVGRDGYLRVFDYSKEQLICGG---------KSY-YGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRK-V--VA 357 (528)
Q Consensus 291 g~~l~s~~~dg~i~vwd~~~~~~~~~~---------~~~-~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~-~--~~ 357 (528)
+.+.++--.+..+.++.++....+... ..+ ......++|.|..+.|..+-+-+-+.||.+.... . +.
T Consensus 140 n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~ 219 (316)
T COG3204 140 NQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVH 219 (316)
T ss_pred CEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccc
Confidence 777777778888888877654221111 112 4567889999999999999898888888876432 1 11
Q ss_pred EeecC-------CCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCC
Q 009715 358 WGEGH-------NSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMD 408 (528)
Q Consensus 358 ~~~~h-------~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~ 408 (528)
....+ -..|.++.|++- .+ .+|+-+.+++.|.-.|....
T Consensus 220 ~~~~~~~~~~~f~~DvSgl~~~~~------~~------~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 220 ASLDPTADRDLFVLDVSGLEFNAI------TN------SLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred cccCcccccceEeeccccceecCC------CC------cEEEEecCCceEEEEecCCC
Confidence 11112 235778888861 33 57777778888877776543
No 394
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=94.68 E-value=0.0056 Score=64.64 Aligned_cols=205 Identities=15% Similarity=0.177 Sum_probs=115.7
Q ss_pred CCCeEEEEECC-CCCEEEEEeCCCcEEEEecC--CceEEee-----ecccCCCeEEEEEcC---CCCEEEEEeCCCcEEE
Q 009715 279 QGSINSIAFST-DGTYLATVGRDGYLRVFDYS--KEQLICG-----GKSYYGALLCCAWSM---DGKYILTGGEDDLVQV 347 (528)
Q Consensus 279 ~~~v~~l~~sp-dg~~l~s~~~dg~i~vwd~~--~~~~~~~-----~~~~~~~v~~l~~sp---~g~~l~sg~~dg~v~v 347 (528)
.+.|-.+.|-. +...++ -.-|.+.|||++ .|+.... ...+...+.-|.|.| +.-++..+-.++.|++
T Consensus 132 ~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~l 209 (1283)
T KOG1916|consen 132 PGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRL 209 (1283)
T ss_pred CCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeE
Confidence 47777787754 333333 334678889875 3443322 233445566677776 4556667777888888
Q ss_pred EECCCCeEEEEeecCCCCeEEEEEecC----CCCCCCCCCccceeEEEEEEeCCCeEEEEEcc-CCe----EEEEeecCC
Q 009715 348 WSMEDRKVVAWGEGHNSWVSGVAFDSY----WSQPNSDGTAETVMYRFGSVGQDTRLLLWDLE-MDE----IVVPLRRGP 418 (528)
Q Consensus 348 wd~~~~~~~~~~~~h~~~V~~v~f~p~----~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~-~~~----~~~~~~~~~ 418 (528)
.+.+.... ..+.+|..++..++|-.. ....++|| ..|+....||.+++|.+. +++ |....+.+.
T Consensus 210 L~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDG------tv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd 282 (1283)
T KOG1916|consen 210 LNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDG------TVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHD 282 (1283)
T ss_pred eeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCC------cEEEEeecCCccceeeeeeeccccHhhhhccCCCC
Confidence 87765332 345568888777665220 01112288 789999999999888753 233 222232222
Q ss_pred CCCCCeecCCCC------CccCCceeeeecCCCCceeeecCCCCce--------EEeecCCCCeEEEEEeC---CeEEEE
Q 009715 419 LGGSPTFSTGSQ------SAHWDNVCPVGTLQPAPSMRDVPKLSPL--------VAHRVHTEPLSGLIFTQ---ESVLTV 481 (528)
Q Consensus 419 ~~~~~~~s~~~~------~~~~d~~~~~g~~~~~~~~~d~~~~~~~--------~~~~~h~~~V~~l~~s~---d~l~t~ 481 (528)
....+++.+..+ ...|...|..........+|....++++ .....|...|..+.... -.+++-
T Consensus 283 ~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cll~~~~d~v~iV~p~~~~v~~~~~~~~~~~~~v~r 362 (1283)
T KOG1916|consen 283 KHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCLLDKLIDGVQIVGPHDGEVTDLSMCQWMTTRLVSR 362 (1283)
T ss_pred CCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhhhhhcccceEeecCCCccccchhhhHHHHHHHHHh
Confidence 222233333222 4456666666666677778876555544 11123444443332221 136777
Q ss_pred ECCCeEEEEeC
Q 009715 482 CREGHIKIWMR 492 (528)
Q Consensus 482 s~Dg~i~iW~~ 492 (528)
+-|+.|++|.-
T Consensus 363 ~v~~~i~~~qn 373 (1283)
T KOG1916|consen 363 SVDGTIKIWQN 373 (1283)
T ss_pred hhHHHHHHhhc
Confidence 88899999963
No 395
>PHA02713 hypothetical protein; Provisional
Probab=94.64 E-value=5.1 Score=42.70 Aligned_cols=51 Identities=18% Similarity=0.309 Sum_probs=27.7
Q ss_pred CCCEEEEEeCCC-----cEEEEecCCceEEe--eecccCCCeEEEEEcCCCCEEEEEeCC
Q 009715 290 DGTYLATVGRDG-----YLRVFDYSKEQLIC--GGKSYYGALLCCAWSMDGKYILTGGED 342 (528)
Q Consensus 290 dg~~l~s~~~dg-----~i~vwd~~~~~~~~--~~~~~~~~v~~l~~sp~g~~l~sg~~d 342 (528)
+++..+.|+.++ .+..||..+.+-.. .+.........+ .-++++.+.|+.+
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~--~~~g~IYviGG~~ 408 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMC--VLDQYIYIIGGRT 408 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEE--EECCEEEEEeCCC
Confidence 567777787654 47889988664322 111111111112 2267777777765
No 396
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=94.53 E-value=4.8 Score=38.88 Aligned_cols=151 Identities=17% Similarity=0.175 Sum_probs=77.3
Q ss_pred cCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEEC
Q 009715 209 NNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFS 288 (528)
Q Consensus 209 h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 288 (528)
-.+.+..+.-+++|. +++++..-..+.-|+-... ...++. ..-...|..|.|.
T Consensus 143 ~~gs~~~~~r~~dG~-~vavs~~G~~~~s~~~G~~-----~w~~~~---------------------r~~~~riq~~gf~ 195 (302)
T PF14870_consen 143 TSGSINDITRSSDGR-YVAVSSRGNFYSSWDPGQT-----TWQPHN---------------------RNSSRRIQSMGFS 195 (302)
T ss_dssp ----EEEEEE-TTS--EEEEETTSSEEEEE-TT-S-----S-EEEE-----------------------SSS-EEEEEE-
T ss_pred CcceeEeEEECCCCc-EEEEECcccEEEEecCCCc-----cceEEc---------------------cCccceehhceec
Confidence 346788899999998 6766654444456664320 000000 0113679999999
Q ss_pred CCCCEEEEEeCCCcEEEEe-cCCceEEee----ecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEee---
Q 009715 289 TDGTYLATVGRDGYLRVFD-YSKEQLICG----GKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGE--- 360 (528)
Q Consensus 289 pdg~~l~s~~~dg~i~vwd-~~~~~~~~~----~~~~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~~~~~~~--- 360 (528)
|++.+.+.+ ..|.|+.=+ ....+.... +..-...+..++|.+++...++|+ .|.+ +...+.|+.=....
T Consensus 196 ~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l-~~S~DgGktW~~~~~~~ 272 (302)
T PF14870_consen 196 PDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTL-LVSTDGGKTWQKDRVGE 272 (302)
T ss_dssp TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEES-TT-E-EEESSTTSS-EE-GGGT
T ss_pred CCCCEEEEe-CCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeC-CccE-EEeCCCCccceECcccc
Confidence 998766654 888888877 232333222 112234589999999988777765 4444 45556665433332
Q ss_pred cCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEE
Q 009715 361 GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLW 403 (528)
Q Consensus 361 ~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lw 403 (528)
.-...+..|.|.+ +. .-...+++|.|.-|
T Consensus 273 ~~~~n~~~i~f~~-------~~-------~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 273 NVPSNLYRIVFVN-------PD-------KGFVLGQDGVLLRY 301 (302)
T ss_dssp TSSS---EEEEEE-------TT-------EEEEE-STTEEEEE
T ss_pred CCCCceEEEEEcC-------CC-------ceEEECCCcEEEEe
Confidence 2345678888876 44 34555678877655
No 397
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=94.53 E-value=4.9 Score=42.80 Aligned_cols=104 Identities=22% Similarity=0.223 Sum_probs=55.5
Q ss_pred CCCEEEEEeCCC-----cEEEEecCCceEEeeecccCCCeEEEEE-cCCCCEEEEEeCCC------cEEEEECCCCeE--
Q 009715 290 DGTYLATVGRDG-----YLRVFDYSKEQLICGGKSYYGALLCCAW-SMDGKYILTGGEDD------LVQVWSMEDRKV-- 355 (528)
Q Consensus 290 dg~~l~s~~~dg-----~i~vwd~~~~~~~~~~~~~~~~v~~l~~-sp~g~~l~sg~~dg------~v~vwd~~~~~~-- 355 (528)
+|...|+|+.|| .+-.||..+.+--.. ............ .-+|++.++|+.++ .+..||..+.+-
T Consensus 380 ~g~iYavGG~dg~~~l~svE~YDp~~~~W~~v-a~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~ 458 (571)
T KOG4441|consen 380 DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPV-APMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTL 458 (571)
T ss_pred CCEEEEEeccccccccccEEEecCCCCccccc-CCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceee
Confidence 688889999886 366777765442211 111111222221 22688888888654 467788776532
Q ss_pred EEEeecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCe-----EEEEEccCCe
Q 009715 356 VAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTR-----LLLWDLEMDE 409 (528)
Q Consensus 356 ~~~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~-----i~lwd~~~~~ 409 (528)
+..+.--..... ++.. ++ .+.+.||.|+. |..||..+.+
T Consensus 459 ~~~M~~~R~~~g-~a~~--------~~------~iYvvGG~~~~~~~~~VE~ydp~~~~ 502 (571)
T KOG4441|consen 459 IAPMNTRRSGFG-VAVL--------NG------KIYVVGGFDGTSALSSVERYDPETNQ 502 (571)
T ss_pred cCCcccccccce-EEEE--------CC------EEEEECCccCCCccceEEEEcCCCCc
Confidence 222221111222 3332 55 68888887762 5556655544
No 398
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=94.38 E-value=9.9 Score=41.83 Aligned_cols=113 Identities=13% Similarity=0.054 Sum_probs=62.3
Q ss_pred CCCCCeEEEEecCCcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeC--CCc---EEEEEeCCceEEEEE
Q 009715 165 AKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPG--GDG---AFVVGHADGNLYVYE 239 (528)
Q Consensus 165 ~~~~~~l~~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~--g~~---~l~tg~~dg~v~vwd 239 (528)
..+...++++..++.+...++.... +.... . ..-...|.|+.++|- +++ ++++|..+..+.+.-
T Consensus 496 ~~n~sqVvvA~~~~~l~y~~i~~~~------l~e~~--~---~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~ 564 (1096)
T KOG1897|consen 496 SANASQVVVAGGGLALFYLEIEDGG------LREVS--H---KEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILT 564 (1096)
T ss_pred eecceEEEEecCccEEEEEEeeccc------eeeee--e---heecceeEEEecccCCCCCCcceEEEEEeecceEEEEE
Confidence 4445566667666666666655411 10000 0 114567999999975 444 788898888776665
Q ss_pred cCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCCCCEEEEEeCCCcEEEEecC
Q 009715 240 KSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYS 309 (528)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~~~dg~i~vwd~~ 309 (528)
...+.......... ...- ...|.-..|--|..+|.++..||.+.-|-++
T Consensus 565 ~~pd~~~~~~~~l~-------------~~~i--------PRSIl~~~~e~d~~yLlvalgdG~l~~fv~d 613 (1096)
T KOG1897|consen 565 FLPDLILITHEQLS-------------GEII--------PRSILLTTFEGDIHYLLVALGDGALLYFVLD 613 (1096)
T ss_pred ECCCcceeeeeccC-------------CCcc--------chheeeEEeeccceEEEEEcCCceEEEEEEE
Confidence 43221111000000 0000 1344455555568899999999988765543
No 399
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=94.36 E-value=2.7 Score=44.82 Aligned_cols=189 Identities=21% Similarity=0.236 Sum_probs=96.5
Q ss_pred CCCCCeEEEEecC-C-----cEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeCCce----
Q 009715 165 AKDGHDLLIGLNS-G-----DVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGN---- 234 (528)
Q Consensus 165 ~~~~~~l~~g~~~-G-----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg~---- 234 (528)
.-++...++|+.+ | .+..||.+...+.....+ ...+...-.-.-+|. +.|+|+.||.
T Consensus 330 ~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M------------~~~R~~~~v~~l~g~-iYavGG~dg~~~l~ 396 (571)
T KOG4441|consen 330 VLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPM------------NTKRSDFGVAVLDGK-LYAVGGFDGEKSLN 396 (571)
T ss_pred EECCEEEEEccccCCCcccceEEEecCCCCceeccCCc------------cCccccceeEEECCE-EEEEeccccccccc
Confidence 4456677888888 3 566788776333221111 111222112223666 8899999864
Q ss_pred -EEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCCCCEEEEEeCCC------cEEEEe
Q 009715 235 -LYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDG------YLRVFD 307 (528)
Q Consensus 235 -v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~~~dg------~i~vwd 307 (528)
|-.||..++.=. .+..........-.+.+ +|...++|+.++ .+..||
T Consensus 397 svE~YDp~~~~W~------------------------~va~m~~~r~~~gv~~~--~g~iYi~GG~~~~~~~l~sve~YD 450 (571)
T KOG4441|consen 397 SVECYDPVTNKWT------------------------PVAPMLTRRSGHGVAVL--GGKLYIIGGGDGSSNCLNSVECYD 450 (571)
T ss_pred cEEEecCCCCccc------------------------ccCCCCcceeeeEEEEE--CCEEEEEcCcCCCccccceEEEEc
Confidence 666776542110 00000000011112222 677788887554 567888
Q ss_pred cCCceEEe--eecccCCCeEEEEEcCCCCEEEEEeCCCc-----EEEEECCCCeE--EEEeecCCCCeEEEEEecCCCCC
Q 009715 308 YSKEQLIC--GGKSYYGALLCCAWSMDGKYILTGGEDDL-----VQVWSMEDRKV--VAWGEGHNSWVSGVAFDSYWSQP 378 (528)
Q Consensus 308 ~~~~~~~~--~~~~~~~~v~~l~~sp~g~~l~sg~~dg~-----v~vwd~~~~~~--~~~~~~h~~~V~~v~f~p~~~~~ 378 (528)
..+.+-.. .+..-..... ++ .-++.+.+.|+.|+. |..||..+.+- +..+......+..+..
T Consensus 451 P~t~~W~~~~~M~~~R~~~g-~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~------- 521 (571)
T KOG4441|consen 451 PETNTWTLIAPMNTRRSGFG-VA-VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVL------- 521 (571)
T ss_pred CCCCceeecCCcccccccce-EE-EECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEE-------
Confidence 87664322 1211111111 22 226778888887763 77788877543 2223333344444444
Q ss_pred CCCCCccceeEEEEEEeCCCe-----EEEEEccCCe
Q 009715 379 NSDGTAETVMYRFGSVGQDTR-----LLLWDLEMDE 409 (528)
Q Consensus 379 ~~dg~~~~~~~~l~s~s~D~~-----i~lwd~~~~~ 409 (528)
++ .+.+.|+.|+. |..||..+++
T Consensus 522 --~~------~ly~vGG~~~~~~l~~ve~ydp~~d~ 549 (571)
T KOG4441|consen 522 --GG------KLYAVGGFDGNNNLNTVECYDPETDT 549 (571)
T ss_pred --CC------EEEEEecccCccccceeEEcCCCCCc
Confidence 55 68888887763 5555554443
No 400
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.34 E-value=0.63 Score=51.26 Aligned_cols=146 Identities=13% Similarity=-0.011 Sum_probs=86.4
Q ss_pred CCceeEEEEeeCCCcEEEE--EeCCceEEEEEcCCCCCCCC-ccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEE
Q 009715 210 NSRCTSVTWVPGGDGAFVV--GHADGNLYVYEKSKDGAGDS-SFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIA 286 (528)
Q Consensus 210 ~~~v~~l~~~p~g~~~l~t--g~~dg~v~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 286 (528)
.-++..+...+|+. ..++ .+.+-.|..||+.+-..... ...++. ..+.......-..++.
T Consensus 100 ~~pi~~~v~~~D~t-~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~----------------~s~ts~ek~vf~~~~~ 162 (1405)
T KOG3630|consen 100 EIPIVIFVCFHDAT-DSVVVSTSNGEAVYSFDLEEFSESRYETTVPLK----------------NSATSFEKPVFQLKNV 162 (1405)
T ss_pred cccceEEEeccCCc-eEEEEEecCCceEEEEehHhhhhhhhhhccccc----------------cccchhcccccccccc
Confidence 34677777778866 4333 33334788999875211110 000000 0000000123456888
Q ss_pred ECCC-CCEEEEEeCCCcEEEEecCCceEEeeecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeec----
Q 009715 287 FSTD-GTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEG---- 361 (528)
Q Consensus 287 ~spd-g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~~~~~~~~---- 361 (528)
|+|. -...+.+..|+.|++..+........-.......+|++|+|.|+.++.|-..|.+.-|... .+....+.+
T Consensus 163 wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~ 241 (1405)
T KOG3630|consen 163 WNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVE 241 (1405)
T ss_pred ccCCccchhhhhccccchhhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcC
Confidence 9884 3356777889999998876433322222245678999999999999999999999888653 222222221
Q ss_pred CCCCeEEEEEec
Q 009715 362 HNSWVSGVAFDS 373 (528)
Q Consensus 362 h~~~V~~v~f~p 373 (528)
....|.+|+|-.
T Consensus 242 e~yrvl~v~Wl~ 253 (1405)
T KOG3630|consen 242 ENYRVLSVTWLS 253 (1405)
T ss_pred CCcceeEEEEec
Confidence 135788999964
No 401
>PHA03098 kelch-like protein; Provisional
Probab=94.23 E-value=2.6 Score=44.75 Aligned_cols=63 Identities=17% Similarity=0.185 Sum_probs=33.4
Q ss_pred CCCEEEEEeCC------CcEEEEecCCceEEee--ecccCCCeEEEEEcCCCCEEEEEeCCC--------cEEEEECCCC
Q 009715 290 DGTYLATVGRD------GYLRVFDYSKEQLICG--GKSYYGALLCCAWSMDGKYILTGGEDD--------LVQVWSMEDR 353 (528)
Q Consensus 290 dg~~l~s~~~d------g~i~vwd~~~~~~~~~--~~~~~~~v~~l~~sp~g~~l~sg~~dg--------~v~vwd~~~~ 353 (528)
+++.++.|+.+ ..+..||+.+.+-... +....... ++ ...++++++.|+.+. .+.+||..+.
T Consensus 389 ~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~-~~-~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~ 466 (534)
T PHA03098 389 NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGG-CA-IYHDGKIYVIGGISYIDNIKVYNIVESYNPVTN 466 (534)
T ss_pred CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCc-eE-EEECCEEEEECCccCCCCCcccceEEEecCCCC
Confidence 45666666632 3578889876643221 11111111 22 223566677776432 3888888775
Q ss_pred e
Q 009715 354 K 354 (528)
Q Consensus 354 ~ 354 (528)
+
T Consensus 467 ~ 467 (534)
T PHA03098 467 K 467 (534)
T ss_pred c
Confidence 4
No 402
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=94.05 E-value=4.1 Score=39.33 Aligned_cols=146 Identities=15% Similarity=0.173 Sum_probs=71.0
Q ss_pred CCCCCeEEEEecCCcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCC
Q 009715 165 AKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDG 244 (528)
Q Consensus 165 ~~~~~~l~~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~ 244 (528)
.+++.+++++....-+..||--+..+.+ .......+|..|.|.|++. +.+ ....|.|+.=+.....
T Consensus 153 ~~dG~~vavs~~G~~~~s~~~G~~~w~~------------~~r~~~~riq~~gf~~~~~-lw~-~~~Gg~~~~s~~~~~~ 218 (302)
T PF14870_consen 153 SSDGRYVAVSSRGNFYSSWDPGQTTWQP------------HNRNSSRRIQSMGFSPDGN-LWM-LARGGQIQFSDDPDDG 218 (302)
T ss_dssp -TTS-EEEEETTSSEEEEE-TT-SS-EE------------EE--SSS-EEEEEE-TTS--EEE-EETTTEEEEEE-TTEE
T ss_pred CCCCcEEEEECcccEEEEecCCCccceE------------EccCccceehhceecCCCC-EEE-EeCCcEEEEccCCCCc
Confidence 6788888887554444567754422111 1111456899999999987 444 4478888877622111
Q ss_pred CCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCCCCEEEEEeCCCcEEEEecCCceEEeeec---ccC
Q 009715 245 AGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGK---SYY 321 (528)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~~~dg~i~vwd~~~~~~~~~~~---~~~ 321 (528)
.. ..... .++ ....-.+..++|.++....++|+. |. .+...+.|+.-+..+ .-.
T Consensus 219 ~~---w~~~~---------------~~~---~~~~~~~ld~a~~~~~~~wa~gg~-G~-l~~S~DgGktW~~~~~~~~~~ 275 (302)
T PF14870_consen 219 ET---WSEPI---------------IPI---KTNGYGILDLAYRPPNEIWAVGGS-GT-LLVSTDGGKTWQKDRVGENVP 275 (302)
T ss_dssp EE---E---B----------------TT---SS--S-EEEEEESSSS-EEEEEST-T--EEEESSTTSS-EE-GGGTTSS
T ss_pred cc---ccccc---------------CCc---ccCceeeEEEEecCCCCEEEEeCC-cc-EEEeCCCCccceECccccCCC
Confidence 00 00000 000 000134789999998877776654 43 345566666544433 234
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 009715 322 GALLCCAWSMDGKYILTGGEDDLVQVW 348 (528)
Q Consensus 322 ~~v~~l~~sp~g~~l~sg~~dg~v~vw 348 (528)
..+..|.|.++.+-++.| .+|.|.-|
T Consensus 276 ~n~~~i~f~~~~~gf~lG-~~G~ll~~ 301 (302)
T PF14870_consen 276 SNLYRIVFVNPDKGFVLG-QDGVLLRY 301 (302)
T ss_dssp S---EEEEEETTEEEEE--STTEEEEE
T ss_pred CceEEEEEcCCCceEEEC-CCcEEEEe
Confidence 567888887665555555 67776544
No 403
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=94.05 E-value=5.4 Score=37.59 Aligned_cols=110 Identities=20% Similarity=0.136 Sum_probs=67.3
Q ss_pred CeEEEEECCCCCEEEEEe---CCCcEEEEecCCceEEeeecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEE-CCCCeEE
Q 009715 281 SINSIAFSTDGTYLATVG---RDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWS-MEDRKVV 356 (528)
Q Consensus 281 ~v~~l~~spdg~~l~s~~---~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd-~~~~~~~ 356 (528)
.+.+.++++|+..++... ....|+++..... ....+. ...+....|++++...+....+...+++. ...++..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~-~~~~~~--g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGP-VRPVLT--GGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCc-ceeecc--CCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 678899999999887766 3334566654422 222222 23677889999988777776666767764 3333221
Q ss_pred -EEee--cCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEe---CCCeEEEEEcc
Q 009715 357 -AWGE--GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVG---QDTRLLLWDLE 406 (528)
Q Consensus 357 -~~~~--~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s---~D~~i~lwd~~ 406 (528)
..+. .-...|..+.++| || .+++... .++.|.+=-+.
T Consensus 102 ~~~v~~~~~~~~I~~l~vSp-------DG------~RvA~v~~~~~~~~v~va~V~ 144 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSP-------DG------TRVAVVVEDGGGGRVYVAGVV 144 (253)
T ss_pred eEEecccccCCceEEEEECC-------CC------cEEEEEEecCCCCeEEEEEEE
Confidence 1111 1112899999999 99 4444443 45666665443
No 404
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=93.94 E-value=1.5 Score=45.14 Aligned_cols=115 Identities=14% Similarity=0.205 Sum_probs=72.5
Q ss_pred CCeEEEEECCC----CCEEEEEeCCCcEEEEecC-----CceEEeeeccc---CCC--eEEEEEcCCCCEEEEEeCCCcE
Q 009715 280 GSINSIAFSTD----GTYLATVGRDGYLRVFDYS-----KEQLICGGKSY---YGA--LLCCAWSMDGKYILTGGEDDLV 345 (528)
Q Consensus 280 ~~v~~l~~spd----g~~l~s~~~dg~i~vwd~~-----~~~~~~~~~~~---~~~--v~~l~~sp~g~~l~sg~~dg~v 345 (528)
..|..+.|.|- ...|+.......|.||.+. +.+.+.....+ .-+ -..+.|+|....|++-.....-
T Consensus 57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvS 136 (671)
T PF15390_consen 57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVS 136 (671)
T ss_pred ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCcee
Confidence 56889999983 3345556677899999885 22322221111 111 2457899999888876665555
Q ss_pred EEEECCC--CeEEEEeecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccC
Q 009715 346 QVWSMED--RKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEM 407 (528)
Q Consensus 346 ~vwd~~~--~~~~~~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~ 407 (528)
.+++++. .+....++ -.+.|.|.+|.+ ||. +++++.+..=.-++||-..
T Consensus 137 V~~sV~~d~srVkaDi~-~~G~IhCACWT~-------DG~-----RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 137 VLPSVHCDSSRVKADIK-TSGLIHCACWTK-------DGQ-----RLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred EeeeeeeCCceEEEecc-CCceEEEEEecC-------cCC-----EEEEEeCCeEEEEEecCch
Confidence 5677654 33444454 567899999999 993 3444545544567887543
No 405
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.85 E-value=1.9 Score=42.98 Aligned_cols=139 Identities=12% Similarity=0.125 Sum_probs=85.4
Q ss_pred CCCeEEEEecCCcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCC
Q 009715 167 DGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAG 246 (528)
Q Consensus 167 ~~~~l~~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~ 246 (528)
|.+.++.+...|.+.-|.+.. ++......... ...++|.+|.|++|.+ .||+--.|++|.+++...+...
T Consensus 32 DaNkqlfavrSggatgvvvkg----pndDVpiSfdm-----~d~G~I~SIkFSlDnk-ilAVQR~~~~v~f~nf~~d~~~ 101 (657)
T KOG2377|consen 32 DANKQLFAVRSGGATGVVVKG----PNDDVPISFDM-----DDKGEIKSIKFSLDNK-ILAVQRTSKTVDFCNFIPDNSQ 101 (657)
T ss_pred cCcceEEEEecCCeeEEEEeC----CCCCCCceeee-----cCCCceeEEEeccCcc-eEEEEecCceEEEEecCCCchh
Confidence 444555566666666676543 12222111111 1556999999999999 9999999999999998542211
Q ss_pred CCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCCCCEEEEEeCCCcEEEEecCCc-eEEeeecccCCCeE
Q 009715 247 DSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKE-QLICGGKSYYGALL 325 (528)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~ 325 (528)
... ....+..+..|..+.|+.. .-+|.....| +-+|..... ..++..+.|.-.|+
T Consensus 102 l~~----------------------~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvn 157 (657)
T KOG2377|consen 102 LEY----------------------TQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVN 157 (657)
T ss_pred hHH----------------------HHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhhhhhhhhhcccCcc
Confidence 111 1111112356888999865 4566666555 556655433 33455567788888
Q ss_pred EEEEcCCCCEEEEE
Q 009715 326 CCAWSMDGKYILTG 339 (528)
Q Consensus 326 ~l~~sp~g~~l~sg 339 (528)
-..|.++.+.++.+
T Consensus 158 Wy~yc~et~v~LL~ 171 (657)
T KOG2377|consen 158 WYMYCPETAVILLS 171 (657)
T ss_pred EEEEccccceEeee
Confidence 88999988754433
No 406
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=93.76 E-value=13 Score=41.00 Aligned_cols=118 Identities=13% Similarity=0.058 Sum_probs=75.1
Q ss_pred CCEEEEEeCCCcEEEEecCCceEEeeecccCCC--------eEEEEEc----------------CCCCEEEEEeCCCcEE
Q 009715 291 GTYLATVGRDGYLRVFDYSKEQLICGGKSYYGA--------LLCCAWS----------------MDGKYILTGGEDDLVQ 346 (528)
Q Consensus 291 g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~--------v~~l~~s----------------p~g~~l~sg~~dg~v~ 346 (528)
+..|+.++.++.|.-.|.++|+.+..+...... ...+++. .++..++.+..|+.|.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 567888888899999999999988776532210 1223332 1344788888999999
Q ss_pred EEECCCCeEEEEeecCCCCeE---EE------EEecCCCCCC-CCCCccceeEEEEEEeC----------CCeEEEEEcc
Q 009715 347 VWSMEDRKVVAWGEGHNSWVS---GV------AFDSYWSQPN-SDGTAETVMYRFGSVGQ----------DTRLLLWDLE 406 (528)
Q Consensus 347 vwd~~~~~~~~~~~~h~~~V~---~v------~f~p~~~~~~-~dg~~~~~~~~l~s~s~----------D~~i~lwd~~ 406 (528)
-.|.++|+.+..+. ..+.|. .+ .+.. -++|- -++ .++.++. +|.|+-+|++
T Consensus 274 ALDA~TGk~~W~fg-~~G~vdl~~~~g~~~~g~~~~-ts~P~V~~g-------~VIvG~~v~d~~~~~~~~G~I~A~Da~ 344 (764)
T TIGR03074 274 ALDADTGKLCEDFG-NNGTVDLTAGMGTTPPGYYYP-TSPPLVAGT-------TVVIGGRVADNYSTDEPSGVIRAFDVN 344 (764)
T ss_pred EEECCCCCEEEEec-CCCceeeecccCcCCCccccc-ccCCEEECC-------EEEEEecccccccccCCCcEEEEEECC
Confidence 99999999887664 222221 00 0000 00010 033 4555532 6889999999
Q ss_pred CCeEEEEeecC
Q 009715 407 MDEIVVPLRRG 417 (528)
Q Consensus 407 ~~~~~~~~~~~ 417 (528)
+|+.+..+...
T Consensus 345 TGkl~W~~~~g 355 (764)
T TIGR03074 345 TGALVWAWDPG 355 (764)
T ss_pred CCcEeeEEecC
Confidence 99999988754
No 407
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.72 E-value=6.4 Score=37.24 Aligned_cols=181 Identities=11% Similarity=0.133 Sum_probs=96.4
Q ss_pred CCCCCCccccCCcccCCcccCCCCCCcceeeeCCCccEEEEeCCCcEEEEeCCCCCCC--CCCCCeEEEEecCCcEEEEE
Q 009715 107 GGNGGSKSISGSSRIGSLGASSSSTSMTNTNFDGKGTYIIFNVGDAIFISDLNSQDKD--AKDGHDLLIGLNSGDVYSVS 184 (528)
Q Consensus 107 gh~~~v~~v~~s~~~~~~~~s~s~~s~~~~~~~~~g~~~~~~~~~~i~v~~~~~~~~~--~~~~~~l~~g~~~G~v~iwd 184 (528)
|-.+.+.++.++| +...+.+..+.++.++..+.+|+++---.-.. +..++.. ..++.+.++--.+..++++.
T Consensus 83 g~~~nvS~LTynp-~~rtLFav~n~p~~iVElt~~GdlirtiPL~g-----~~DpE~Ieyig~n~fvi~dER~~~l~~~~ 156 (316)
T COG3204 83 GETANVSSLTYNP-DTRTLFAVTNKPAAIVELTKEGDLIRTIPLTG-----FSDPETIEYIGGNQFVIVDERDRALYLFT 156 (316)
T ss_pred cccccccceeeCC-CcceEEEecCCCceEEEEecCCceEEEecccc-----cCChhHeEEecCCEEEEEehhcceEEEEE
Confidence 5555577888888 44444444444555555555555443221111 1111111 33445555555677888877
Q ss_pred cccccccc-ccceeeeeeeccCCccc-CCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEe
Q 009715 185 LRQQLQDV-GKKLVGAHHYNKDGSVN-NSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVA 262 (528)
Q Consensus 185 ~~~~~~~~-~~~~~~~~~~~~~~~~h-~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~ 262 (528)
+..+.... .+. ..+.-....+ +.....++|.|..+ .|..+-+-.-+.||...........-. .....
T Consensus 157 vd~~t~~~~~~~----~~i~L~~~~k~N~GfEGlA~d~~~~-~l~~aKEr~P~~I~~~~~~~~~l~~~~-~~~~~----- 225 (316)
T COG3204 157 VDADTTVISAKV----QKIPLGTTNKKNKGFEGLAWDPVDH-RLFVAKERNPIGIFEVTQSPSSLSVHA-SLDPT----- 225 (316)
T ss_pred EcCCccEEeccc----eEEeccccCCCCcCceeeecCCCCc-eEEEEEccCCcEEEEEecCCccccccc-ccCcc-----
Confidence 66431110 011 0111111113 66788999999999 788888888888888763221111000 00000
Q ss_pred ccCCCCCCCeEEEeecCCCeEEEEECC-CCCEEEEEeCCCcEEEEecCCceEEe
Q 009715 263 HPRYSKSNPIARWHICQGSINSIAFST-DGTYLATVGRDGYLRVFDYSKEQLIC 315 (528)
Q Consensus 263 ~~~~~~~~~~~~~~~h~~~v~~l~~sp-dg~~l~s~~~dg~i~vwd~~~~~~~~ 315 (528)
..+.+. -..|.++.|++ .+.+|+.+..++.+...|.. |+.+.
T Consensus 226 -----~~~~~f-----~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~-G~~~~ 268 (316)
T COG3204 226 -----ADRDLF-----VLDVSGLEFNAITNSLLVLSDESRRLLEVDLS-GEVIE 268 (316)
T ss_pred -----cccceE-----eeccccceecCCCCcEEEEecCCceEEEEecC-CCeee
Confidence 000111 15678899997 67778888888888888886 44343
No 408
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=93.71 E-value=1.8 Score=46.41 Aligned_cols=131 Identities=9% Similarity=0.113 Sum_probs=74.9
Q ss_pred ceeEEEEee--CCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEEC-
Q 009715 212 RCTSVTWVP--GGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFS- 288 (528)
Q Consensus 212 ~v~~l~~~p--~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s- 288 (528)
.|+-|...- +.+ +|+.+..||.|.+|....--.. +.......... .......|...+.. ..++.+++++
T Consensus 102 tIN~i~v~~lg~~E-VLl~c~DdG~V~~Yyt~~I~~~---i~~~~~~~~~~---~~r~~i~P~f~~~v-~~SaWGLdIh~ 173 (717)
T PF08728_consen 102 TINFIKVGDLGGEE-VLLLCTDDGDVLAYYTETIIEA---IERFSEDNDSG---FSRLKIKPFFHLRV-GASAWGLDIHD 173 (717)
T ss_pred eeeEEEecccCCee-EEEEEecCCeEEEEEHHHHHHH---HHhhccccccc---cccccCCCCeEeec-CCceeEEEEEe
Confidence 455554433 333 8999999999999987430000 00000000000 00011122222221 3578899998
Q ss_pred -CCCCEEEEEeCCCcEEEEecCCc--eEEee-ecccCCCeEEEEEcCCC---C---EEEEEeCCCcEEEEEC
Q 009715 289 -TDGTYLATVGRDGYLRVFDYSKE--QLICG-GKSYYGALLCCAWSMDG---K---YILTGGEDDLVQVWSM 350 (528)
Q Consensus 289 -pdg~~l~s~~~dg~i~vwd~~~~--~~~~~-~~~~~~~v~~l~~sp~g---~---~l~sg~~dg~v~vwd~ 350 (528)
...++||+++....|.||-+... +.... -..+...|-+|+|-++. . ++++++-.|.+.+|++
T Consensus 174 ~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 174 YKKSRLIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred cCcceEEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 77888888888888888876542 11110 11255678889997643 2 6777888999998887
No 409
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=93.66 E-value=0.021 Score=56.59 Aligned_cols=154 Identities=16% Similarity=0.181 Sum_probs=106.1
Q ss_pred cCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEEC
Q 009715 209 NNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFS 288 (528)
Q Consensus 209 h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 288 (528)
+-.......|-|++. -++.++.+-.|..||-.......... .+....++|.
T Consensus 33 alv~pi~~~w~~e~~-nlavaca~tiv~~YD~agq~~le~n~----------------------------tg~aldm~wD 83 (615)
T KOG2247|consen 33 ALVGPIIHRWRPEGH-NLAVACANTIVIYYDKAGQVILELNP----------------------------TGKALDMAWD 83 (615)
T ss_pred hccccceeeEecCCC-ceehhhhhhHHHhhhhhcceecccCC----------------------------chhHhhhhhc
Confidence 444455678899998 48888888899999865321111111 2455577887
Q ss_pred CCCCEEEE-EeCCCcEEEEecCCceEEeeec--ccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCC
Q 009715 289 TDGTYLAT-VGRDGYLRVFDYSKEQLICGGK--SYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSW 365 (528)
Q Consensus 289 pdg~~l~s-~~~dg~i~vwd~~~~~~~~~~~--~~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~~~~~~~~h~~~ 365 (528)
-++..++. +-..+.+.+||+.+...-+.-. .|.... +.|++-...++.+...+.+.|++..+.+.+...-.|...
T Consensus 84 kegdvlavlAek~~piylwd~n~eytqqLE~gg~~s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RR 161 (615)
T KOG2247|consen 84 KEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGGTSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRR 161 (615)
T ss_pred cccchhhhhhhcCCCeeechhhhhhHHHHhccCcchHHH--HhhccCCccccccccccceEEEeccchhhhhhhcccccc
Confidence 77765544 4567889999998553221111 122222 789999999999999999999999887666555459999
Q ss_pred eEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccC
Q 009715 366 VSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEM 407 (528)
Q Consensus 366 V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~ 407 (528)
++++++.+ .+ +.+.++.|..+.+-...+
T Consensus 162 gtq~av~l-------Ed-------~vil~dcd~~L~v~~qeg 189 (615)
T KOG2247|consen 162 GTQIAVTL-------ED-------YVILCDCDNTLSVTTQEG 189 (615)
T ss_pred eeEEEecc-------cc-------eeeecCcHHHHHHhhhcc
Confidence 99999998 66 677888777766544433
No 410
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=93.65 E-value=3.7 Score=44.12 Aligned_cols=118 Identities=11% Similarity=0.074 Sum_probs=76.7
Q ss_pred CCeEEEEECC--CCCEEEEEeCCCcEEEEecCC-------c----e---------EEeeecccCCCeEEEEEc--CCCCE
Q 009715 280 GSINSIAFST--DGTYLATVGRDGYLRVFDYSK-------E----Q---------LICGGKSYYGALLCCAWS--MDGKY 335 (528)
Q Consensus 280 ~~v~~l~~sp--dg~~l~s~~~dg~i~vwd~~~-------~----~---------~~~~~~~~~~~v~~l~~s--p~g~~ 335 (528)
..|+-|.... +...|+.|.+||.|.+|.+++ . + +...++ ....++.++++ ...++
T Consensus 101 HtIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rl 179 (717)
T PF08728_consen 101 HTINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRL 179 (717)
T ss_pred ceeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceE
Confidence 4566666554 556899999999999997631 1 0 111111 23467889988 78889
Q ss_pred EEEEeCCCcEEEEECCC--CeEEE-EeecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEc
Q 009715 336 ILTGGEDDLVQVWSMED--RKVVA-WGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDL 405 (528)
Q Consensus 336 l~sg~~dg~v~vwd~~~--~~~~~-~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~ 405 (528)
||+++....|.||-... .+... .-..|..-|.+|.|-+ +.......-.|++++-.|.+.+|++
T Consensus 180 IAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~-------~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 180 IAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLD-------DDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEecCCceEEEEEEeccccccccccccccccCCCeeEeec-------CCCCCccceEEEEEeccCcEEEEEE
Confidence 99998888888876543 11111 1112666799999987 3211111137888899999999888
No 411
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=93.44 E-value=1.4 Score=44.42 Aligned_cols=95 Identities=9% Similarity=0.024 Sum_probs=64.9
Q ss_pred cCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCeEEEEEecCCCCCC--------CCCCccceeEEE
Q 009715 320 YYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPN--------SDGTAETVMYRF 391 (528)
Q Consensus 320 ~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~v~f~p~~~~~~--------~dg~~~~~~~~l 391 (528)
....+.+|+.+|++++.|+...=|.|.++|+..+..++.++|..+.= +.|-...+... ..........++
T Consensus 306 ~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAq--c~wi~~~~~~~~~~~~~~~~~~~~~~~l~Lv 383 (415)
T PF14655_consen 306 SKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQ--CGWIEVPEEGDRDRSNSNSPKSSSRFALFLV 383 (415)
T ss_pred CCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccce--EEEEEeecccccccccccccCCCCcceEEEE
Confidence 34457899999999999988888999999999999888888765532 11211000000 000112233556
Q ss_pred EEEeCCCeEEEEEccCCeEEEEeec
Q 009715 392 GSVGQDTRLLLWDLEMDEIVVPLRR 416 (528)
Q Consensus 392 ~s~s~D~~i~lwd~~~~~~~~~~~~ 416 (528)
+-.-.-|.|.||+++.+..+..+..
T Consensus 384 IyaprRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 384 IYAPRRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred EEeccCCeEEEEecCCCCEEEEEEe
Confidence 6667889999999999999887765
No 412
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.18 E-value=16 Score=40.09 Aligned_cols=93 Identities=16% Similarity=0.180 Sum_probs=52.7
Q ss_pred CceeEEEEeeCCCcEEEEEeCCceEEEEEcCC-CCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECC
Q 009715 211 SRCTSVTWVPGGDGAFVVGHADGNLYVYEKSK-DGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST 289 (528)
Q Consensus 211 ~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp 289 (528)
-.|..|.++|+|. +|+..+..| |.|-.+.. .+. ...+........+.... ......-..+...|..+.|+|
T Consensus 85 f~v~~i~~n~~g~-~lal~G~~~-v~V~~LP~r~g~-~~~~~~g~~~i~Crt~~-----v~~~~~~~~~~~~i~qv~WhP 156 (717)
T PF10168_consen 85 FEVHQISLNPTGS-LLALVGPRG-VVVLELPRRWGK-NGEFEDGKKEINCRTVP-----VDERFFTSNSSLEIKQVRWHP 156 (717)
T ss_pred eeEEEEEECCCCC-EEEEEcCCc-EEEEEeccccCc-cccccCCCcceeEEEEE-----echhhccCCCCceEEEEEEcC
Confidence 3689999999999 777777654 44555432 111 01111111100000000 000000112346789999999
Q ss_pred C---CCEEEEEeCCCcEEEEecCCc
Q 009715 290 D---GTYLATVGRDGYLRVFDYSKE 311 (528)
Q Consensus 290 d---g~~l~s~~~dg~i~vwd~~~~ 311 (528)
. +..|++-..|+.+|+||+...
T Consensus 157 ~s~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 157 WSESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred CCCCCCeEEEEecCCEEEEEecCCC
Confidence 5 578999999999999999754
No 413
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=93.04 E-value=0.42 Score=30.81 Aligned_cols=31 Identities=26% Similarity=0.486 Sum_probs=26.5
Q ss_pred CCeEEEEECCC-C--CEEEEEeCCCcEEEEecCC
Q 009715 280 GSINSIAFSTD-G--TYLATVGRDGYLRVFDYSK 310 (528)
Q Consensus 280 ~~v~~l~~spd-g--~~l~s~~~dg~i~vwd~~~ 310 (528)
++|+++.|+|+ + .+|+.+-.-+.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 47899999984 4 5888888889999999985
No 414
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=93.02 E-value=7 Score=35.66 Aligned_cols=139 Identities=16% Similarity=0.121 Sum_probs=78.8
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCC--------CeEEEEEecCCCCCCCCCCccceeEEEEE
Q 009715 322 GALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNS--------WVSGVAFDSYWSQPNSDGTAETVMYRFGS 393 (528)
Q Consensus 322 ~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~~~~~~~~h~~--------~V~~v~f~p~~~~~~~dg~~~~~~~~l~s 393 (528)
...+.-..+|+|++++-...|-. -++....+.....+.+|.- --+.++|+. |-+ .+...
T Consensus 109 nR~NDgkvdP~Gryy~GtMad~~-~~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~-------d~K-----~fY~i 175 (310)
T KOG4499|consen 109 NRLNDGKVDPDGRYYGGTMADFG-DDLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDS-------DAK-----KFYYI 175 (310)
T ss_pred cccccCccCCCCceeeeeecccc-ccccccccEEEEeccCCCceeeehhccCCccccccc-------cCc-----EEEEE
Confidence 34555677999998543333322 2333344555555555542 235677865 542 45667
Q ss_pred EeCCCeEEEEE--ccCCe-----EEEEeecCCCCCCCeecCCCCCccCCceeeeec-CCCCceeeecCCCCceEEeecCC
Q 009715 394 VGQDTRLLLWD--LEMDE-----IVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGT-LQPAPSMRDVPKLSPLVAHRVHT 465 (528)
Q Consensus 394 ~s~D~~i~lwd--~~~~~-----~~~~~~~~~~~~~~~~s~~~~~~~~d~~~~~g~-~~~~~~~~d~~~~~~~~~~~~h~ 465 (528)
-+.+-.|.-|| ..+|. .+..++...+-. ..-++|....-+..+-+.+ ..+.+...|..+++.+.++.-..
T Consensus 176 Dsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e--~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt 253 (310)
T KOG4499|consen 176 DSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFE--SLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPT 253 (310)
T ss_pred ccCceEEeeeecCCCcccccCcceeEEeccCCCcC--CCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCC
Confidence 77888898888 44443 344444321111 1112222111122222222 23467778888999999999999
Q ss_pred CCeEEEEEeC
Q 009715 466 EPLSGLIFTQ 475 (528)
Q Consensus 466 ~~V~~l~~s~ 475 (528)
..|++++|--
T Consensus 254 ~qitsccFgG 263 (310)
T KOG4499|consen 254 PQITSCCFGG 263 (310)
T ss_pred CceEEEEecC
Confidence 9999999975
No 415
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=93.02 E-value=17 Score=40.12 Aligned_cols=113 Identities=16% Similarity=0.182 Sum_probs=63.1
Q ss_pred CCcEEEEecCCceEEeeeccc---------CC--------Ce-EEEEEcCCCCEEEEEe------------------CCC
Q 009715 300 DGYLRVFDYSKEQLICGGKSY---------YG--------AL-LCCAWSMDGKYILTGG------------------EDD 343 (528)
Q Consensus 300 dg~i~vwd~~~~~~~~~~~~~---------~~--------~v-~~l~~sp~g~~l~sg~------------------~dg 343 (528)
+|.|+-+|.++|+++..+..- .+ .+ ...++.+...++..+. ..+
T Consensus 335 ~G~I~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~ 414 (764)
T TIGR03074 335 SGVIRAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSS 414 (764)
T ss_pred CcEEEEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccc
Confidence 688999999999988765320 00 01 1234444433333321 123
Q ss_pred cEEEEECCCCeEEEEeec--CCCCeEEEEEecCCC-CCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEEEee
Q 009715 344 LVQVWSMEDRKVVAWGEG--HNSWVSGVAFDSYWS-QPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLR 415 (528)
Q Consensus 344 ~v~vwd~~~~~~~~~~~~--h~~~V~~v~f~p~~~-~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~ 415 (528)
.|.-.|.++|+....++. |+-+=.++...|..- -+..+| .....++.++.+|.+.+.|-++++.+..++
T Consensus 415 slvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G---~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~ 486 (764)
T TIGR03074 415 SLVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADG---TTVPALVAPTKQGQIYVLDRRTGEPIVPVE 486 (764)
T ss_pred eEEEEeCCCCceEEEecccCCccccccccCCceEEeeecCCC---cEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence 466678888887766653 322211111111000 000033 122479999999999999999999887654
No 416
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=92.45 E-value=1.8 Score=43.72 Aligned_cols=85 Identities=21% Similarity=0.307 Sum_probs=62.8
Q ss_pred EEeecCCCeEEEEECCCCCEEEEEeCCCcEEEEecCCceEEeeecccCCCeEEEEEcC----C----------------C
Q 009715 274 RWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSM----D----------------G 333 (528)
Q Consensus 274 ~~~~h~~~v~~l~~spdg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp----~----------------g 333 (528)
.+......+.+|..+|++++.|+...-|.|.++|+.++..++..+++.+.= +.|-. . .
T Consensus 302 ~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAq--c~wi~~~~~~~~~~~~~~~~~~~~~~~ 379 (415)
T PF14655_consen 302 GLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQ--CGWIEVPEEGDRDRSNSNSPKSSSRFA 379 (415)
T ss_pred eeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccce--EEEEEeecccccccccccccCCCCcce
Confidence 344445678999999999988888888999999999999998888876642 22211 1 1
Q ss_pred CEE-EEEeCCCcEEEEECCCCeEEEEee
Q 009715 334 KYI-LTGGEDDLVQVWSMEDRKVVAWGE 360 (528)
Q Consensus 334 ~~l-~sg~~dg~v~vwd~~~~~~~~~~~ 360 (528)
.+| +-.-.-|.|.||+++.+..+..+.
T Consensus 380 l~LvIyaprRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 380 LFLVIYAPRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred EEEEEEeccCCeEEEEecCCCCEEEEEE
Confidence 122 335668899999999988777665
No 417
>PHA02790 Kelch-like protein; Provisional
Probab=92.37 E-value=9 Score=39.98 Aligned_cols=100 Identities=8% Similarity=-0.026 Sum_probs=51.7
Q ss_pred CCCEEEEEeCCC---cEEEEecCCceEEee--ecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE--EEEeecC
Q 009715 290 DGTYLATVGRDG---YLRVFDYSKEQLICG--GKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKV--VAWGEGH 362 (528)
Q Consensus 290 dg~~l~s~~~dg---~i~vwd~~~~~~~~~--~~~~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~~--~~~~~~h 362 (528)
+++..+.|+.++ .+..||.++.+-... +....... ++ ..-++++.+.|+ .+.+||.++.+- +..+...
T Consensus 362 ~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~-~~-~~~~~~IYv~GG---~~e~ydp~~~~W~~~~~m~~~ 436 (480)
T PHA02790 362 NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKS-CA-LVFGRRLFLVGR---NAEFYCESSNTWTLIDDPIYP 436 (480)
T ss_pred CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccc-eE-EEECCEEEEECC---ceEEecCCCCcEeEcCCCCCC
Confidence 566777777553 466788876543221 11111111 22 233566666664 577888876532 2222211
Q ss_pred CCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCC-----CeEEEEEccCCe
Q 009715 363 NSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQD-----TRLLLWDLEMDE 409 (528)
Q Consensus 363 ~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D-----~~i~lwd~~~~~ 409 (528)
......+.. +| .+.+.||.+ ..|..||..+++
T Consensus 437 r~~~~~~v~---------~~------~IYviGG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 437 RDNPELIIV---------DN------KLLLIGGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred ccccEEEEE---------CC------EEEEECCcCCCcccceEEEEECCCCe
Confidence 222333333 55 677777754 346677766554
No 418
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=92.25 E-value=4.6 Score=41.81 Aligned_cols=117 Identities=16% Similarity=0.107 Sum_probs=66.6
Q ss_pred CCCCCeEEEEecCCcEEEEEccccccccccceeee-eeeccCCcccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCC
Q 009715 165 AKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGA-HHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKD 243 (528)
Q Consensus 165 ~~~~~~l~~g~~~G~v~iwd~~~~~~~~~~~~~~~-~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~ 243 (528)
..+-..|++-.....|.+|.+.....+..+.+... -.+.+.+.. --..+.|+|... +|++-..+..-.++++..+
T Consensus 69 ~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pv---LpQGCVWHPk~~-iL~VLT~~dvSV~~sV~~d 144 (671)
T PF15390_consen 69 TADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPV---LPQGCVWHPKKA-ILTVLTARDVSVLPSVHCD 144 (671)
T ss_pred cCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCccc---CCCcccccCCCc-eEEEEecCceeEeeeeeeC
Confidence 44555677777778999998864222223332221 111111111 123578999998 7776555444445666542
Q ss_pred CCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCCCCEEEEEeCC-CcEEEEecCC
Q 009715 244 GAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRD-GYLRVFDYSK 310 (528)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~~~d-g~i~vwd~~~ 310 (528)
.. .++.--...+-|.|.+|.+||++|+++-.. =.-++||-..
T Consensus 145 ~s-------------------------rVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 145 SS-------------------------RVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred Cc-------------------------eEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence 21 111111225889999999999988877443 2457888653
No 419
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=91.99 E-value=5.4 Score=42.44 Aligned_cols=110 Identities=16% Similarity=0.111 Sum_probs=70.2
Q ss_pred eEEEEECCCCCEEEEEeCCCcEEEEecCCceEEeeec-ccCCCeEEEEEc--CCCCEEEEEeCCCcEEEEECCC------
Q 009715 282 INSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGK-SYYGALLCCAWS--MDGKYILTGGEDDLVQVWSMED------ 352 (528)
Q Consensus 282 v~~l~~spdg~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~l~~s--p~g~~l~sg~~dg~v~vwd~~~------ 352 (528)
+.-+.-+.-++..++-+....+.|||.+.+....... ...+.|.+++|. |+++.+++.+-...|.+|--..
T Consensus 32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~ 111 (631)
T PF12234_consen 32 PSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNK 111 (631)
T ss_pred cceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcC
Confidence 3344444444444443444579999999887543322 346889999995 5888888888888999885421
Q ss_pred ---CeEEEEe--ecCC-CCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEcc
Q 009715 353 ---RKVVAWG--EGHN-SWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLE 406 (528)
Q Consensus 353 ---~~~~~~~--~~h~-~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~ 406 (528)
-.++..+ ..|+ .+|.+..|.+ || . |+.++ ++.+.|+|-.
T Consensus 112 ~p~w~~i~~i~i~~~T~h~Igds~Wl~-------~G------~-LvV~s-GNqlfv~dk~ 156 (631)
T PF12234_consen 112 GPSWAPIRKIDISSHTPHPIGDSIWLK-------DG------T-LVVGS-GNQLFVFDKW 156 (631)
T ss_pred CcccceeEEEEeecCCCCCccceeEec-------CC------e-EEEEe-CCEEEEECCC
Confidence 1233333 2444 5789999999 99 3 33333 4678888743
No 420
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=91.96 E-value=9.7 Score=34.78 Aligned_cols=93 Identities=13% Similarity=0.107 Sum_probs=63.7
Q ss_pred CCeEEEEECCCCCEEEEE-eCCCcEEEEe--cCCceE-----Eeeecc---cC-CCeEEEEEcCCCCEEEEEeCCCcEEE
Q 009715 280 GSINSIAFSTDGTYLATV-GRDGYLRVFD--YSKEQL-----ICGGKS---YY-GALLCCAWSMDGKYILTGGEDDLVQV 347 (528)
Q Consensus 280 ~~v~~l~~spdg~~l~s~-~~dg~i~vwd--~~~~~~-----~~~~~~---~~-~~v~~l~~sp~g~~l~sg~~dg~v~v 347 (528)
+--+.++|+.|.+.+... +.+-.|.-|| ..+|.. +..++. .. -..-.++..-+|.+.++.-..++|..
T Consensus 158 ~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~ 237 (310)
T KOG4499|consen 158 GISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQK 237 (310)
T ss_pred cCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEE
Confidence 344678998876655544 5566777787 455532 222221 01 11122444557888888888899999
Q ss_pred EECCCCeEEEEeecCCCCeEEEEEe
Q 009715 348 WSMEDRKVVAWGEGHNSWVSGVAFD 372 (528)
Q Consensus 348 wd~~~~~~~~~~~~h~~~V~~v~f~ 372 (528)
+|..+|+.+..+.-....|++.+|-
T Consensus 238 ~dp~tGK~L~eiklPt~qitsccFg 262 (310)
T KOG4499|consen 238 VDPTTGKILLEIKLPTPQITSCCFG 262 (310)
T ss_pred ECCCCCcEEEEEEcCCCceEEEEec
Confidence 9999999999998788999999994
No 421
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=91.72 E-value=24 Score=38.73 Aligned_cols=28 Identities=29% Similarity=0.526 Sum_probs=22.1
Q ss_pred CCeEEEEECCCCCEEEEEeCCCcEEEEec
Q 009715 280 GSINSIAFSTDGTYLATVGRDGYLRVFDY 308 (528)
Q Consensus 280 ~~v~~l~~spdg~~l~s~~~dg~i~vwd~ 308 (528)
-.|..|.++|+|.+|+..+..| |.|..+
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~-v~V~~L 112 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRG-VVVLEL 112 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCc-EEEEEe
Confidence 4688999999999999998755 555554
No 422
>PRK13684 Ycf48-like protein; Provisional
Probab=91.38 E-value=16 Score=36.09 Aligned_cols=108 Identities=19% Similarity=0.109 Sum_probs=64.8
Q ss_pred CCeEEEEECCCCCEEEEEeCCCcEEEEecCCceEEeeecc----cCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE
Q 009715 280 GSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKS----YYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKV 355 (528)
Q Consensus 280 ~~v~~l~~spdg~~l~s~~~dg~i~vwd~~~~~~~~~~~~----~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~~ 355 (528)
..++++.+.++++.++++ ..|.+++=..+.++....... ....+..+.+.|++..++++ .+|.|. ...+.++.
T Consensus 215 ~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~t 291 (334)
T PRK13684 215 RRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGGKT 291 (334)
T ss_pred ccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCccccccCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCCCC
Confidence 578899999998876665 557665433444443332221 12347788999988765554 567554 44454543
Q ss_pred EEEee---cCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEE
Q 009715 356 VAWGE---GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWD 404 (528)
Q Consensus 356 ~~~~~---~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd 404 (528)
-.... .-......+.|.. ++ ..+..+..|.|.-|+
T Consensus 292 W~~~~~~~~~~~~~~~~~~~~-------~~-------~~~~~G~~G~il~~~ 329 (334)
T PRK13684 292 WEKDPVGEEVPSNFYKIVFLD-------PE-------KGFVLGQRGVLLRYV 329 (334)
T ss_pred CeECCcCCCCCcceEEEEEeC-------CC-------ceEEECCCceEEEec
Confidence 33322 2223577788765 44 455677788887775
No 423
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=91.28 E-value=6.5 Score=41.85 Aligned_cols=123 Identities=15% Similarity=0.187 Sum_probs=76.1
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEee-cCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEE
Q 009715 323 ALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGE-GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLL 401 (528)
Q Consensus 323 ~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~~~~~~~-~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~ 401 (528)
...-+.-+.-++..++-.....+.|||.+.+.....-. ...+.|.++.|.. .+|| ..+++.|..+.|.
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWts-----t~d~------qsiLaVGf~~~v~ 99 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTS-----TPDG------QSILAVGFPHHVL 99 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeee-----cCCC------CEEEEEEcCcEEE
Confidence 34445555556655555556689999999886443322 3578899999975 2367 6788999999999
Q ss_pred EEEccCCeEEEEeecCCCCCCCeecCCCCCccCCceeeeecCCCCceeeecCCCCceEE--eecCC-CCeEEEEEeCCeE
Q 009715 402 LWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVA--HRVHT-EPLSGLIFTQESV 478 (528)
Q Consensus 402 lwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~--~~~h~-~~V~~l~~s~d~l 478 (528)
++--.... ... . .+...++.. +..|+ .+|.+..|.+++.
T Consensus 100 l~~Q~R~d----y~~----~------------------------------~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~ 141 (631)
T PF12234_consen 100 LYTQLRYD----YTN----K------------------------------GPSWAPIRKIDISSHTPHPIGDSIWLKDGT 141 (631)
T ss_pred EEEccchh----hhc----C------------------------------CcccceeEEEEeecCCCCCccceeEecCCe
Confidence 98642210 000 0 011111111 12344 5799999999985
Q ss_pred EEEECCCeEEEEeCCC
Q 009715 479 LTVCREGHIKIWMRPG 494 (528)
Q Consensus 479 ~t~s~Dg~i~iW~~~~ 494 (528)
+..+.++.+.|++..-
T Consensus 142 LvV~sGNqlfv~dk~~ 157 (631)
T PF12234_consen 142 LVVGSGNQLFVFDKWL 157 (631)
T ss_pred EEEEeCCEEEEECCCc
Confidence 5555567899988543
No 424
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=90.75 E-value=1.1 Score=28.90 Aligned_cols=31 Identities=19% Similarity=0.422 Sum_probs=26.1
Q ss_pred CCeEEEEEcCCC---CEEEEEeCCCcEEEEECCC
Q 009715 322 GALLCCAWSMDG---KYILTGGEDDLVQVWSMED 352 (528)
Q Consensus 322 ~~v~~l~~sp~g---~~l~sg~~dg~v~vwd~~~ 352 (528)
+.|.++.|+|.. .+|+..-.-+.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 468999999844 4888888889999999995
No 425
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.54 E-value=11 Score=37.79 Aligned_cols=120 Identities=14% Similarity=0.177 Sum_probs=79.6
Q ss_pred cCCCeEEEEECCCCCEEEEEeCCCcEEEEecCCceEEe----eecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 009715 278 CQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLIC----GGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDR 353 (528)
Q Consensus 278 h~~~v~~l~~spdg~~l~s~~~dg~i~vwd~~~~~~~~----~~~~~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~ 353 (528)
..++|.+|.|++|.+.||+--.+..|.+++....+... ..+.....|....|+.. .-+|.-.. .-+.+|-+...
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~-~G~e~y~v~pe 142 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITD-QGIEFYQVLPE 142 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEec-CCeEEEEEchh
Confidence 35899999999999999999999999999985333222 22223456889999876 44555443 34677766543
Q ss_pred -eEEEEeecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeE
Q 009715 354 -KVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEI 410 (528)
Q Consensus 354 -~~~~~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~ 410 (528)
+.++..+.|...|+-..|++ +- ..-+|.++-..+++.=+-++++..
T Consensus 143 krslRlVks~~~nvnWy~yc~-------et----~v~LL~t~~~~n~lnpf~~~~~~v 189 (657)
T KOG2377|consen 143 KRSLRLVKSHNLNVNWYMYCP-------ET----AVILLSTTVLENVLNPFHFRAGTM 189 (657)
T ss_pred hhhhhhhhhcccCccEEEEcc-------cc----ceEeeeccccccccccEEEeecee
Confidence 34556667888888888988 54 223344443555655566665543
No 426
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=90.42 E-value=16 Score=34.40 Aligned_cols=160 Identities=17% Similarity=0.129 Sum_probs=96.7
Q ss_pred ceeEEEEeeCCCcEEEEEeCCc--eEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECC
Q 009715 212 RCTSVTWVPGGDGAFVVGHADG--NLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST 289 (528)
Q Consensus 212 ~v~~l~~~p~g~~~l~tg~~dg--~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp 289 (528)
-...+.|..+|. ++-+.+.-| .|+.+|+.++... ...+. . ...| --.++..
T Consensus 46 FTQGL~~~~~g~-LyESTG~yG~S~l~~~d~~tg~~~-~~~~l-~-~~~F----------------------gEGit~~- 98 (264)
T PF05096_consen 46 FTQGLEFLDDGT-LYESTGLYGQSSLRKVDLETGKVL-QSVPL-P-PRYF----------------------GEGITIL- 98 (264)
T ss_dssp EEEEEEEEETTE-EEEEECSTTEEEEEEEETTTSSEE-EEEE--T-TT------------------------EEEEEEE-
T ss_pred cCccEEecCCCE-EEEeCCCCCcEEEEEEECCCCcEE-EEEEC-C-cccc----------------------ceeEEEE-
Confidence 455788888887 777777666 6888888763211 10000 0 0000 1122222
Q ss_pred CCCEEEEEeCCCcEEEEecCCceEEeeecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecC-----CC
Q 009715 290 DGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGH-----NS 364 (528)
Q Consensus 290 dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~~~~~~~~h-----~~ 364 (528)
+.+.....-.++...+||.++.+.+..+. +.+.-..++ .|++.|+.......++++|.++.+.+..+.-. -.
T Consensus 99 ~d~l~qLTWk~~~~f~yd~~tl~~~~~~~-y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~ 175 (264)
T PF05096_consen 99 GDKLYQLTWKEGTGFVYDPNTLKKIGTFP-YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVS 175 (264)
T ss_dssp TTEEEEEESSSSEEEEEETTTTEEEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE--
T ss_pred CCEEEEEEecCCeEEEEccccceEEEEEe-cCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECC
Confidence 22334444578899999999999888774 445555666 46777777777889999999887776666522 23
Q ss_pred CeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEEEee
Q 009715 365 WVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLR 415 (528)
Q Consensus 365 ~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~ 415 (528)
.++-+.|- +| ...+=.=....|...|..+|+.+..+.
T Consensus 176 ~LNELE~i--------~G------~IyANVW~td~I~~Idp~tG~V~~~iD 212 (264)
T PF05096_consen 176 NLNELEYI--------NG------KIYANVWQTDRIVRIDPETGKVVGWID 212 (264)
T ss_dssp -EEEEEEE--------TT------EEEEEETTSSEEEEEETTT-BEEEEEE
T ss_pred CcEeEEEE--------cC------EEEEEeCCCCeEEEEeCCCCeEEEEEE
Confidence 56677776 66 555555566778888999998877664
No 427
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=90.10 E-value=12 Score=37.59 Aligned_cols=92 Identities=13% Similarity=0.159 Sum_probs=51.1
Q ss_pred CCeEEEEECCCCCEEEEEe-----------CCC-cEEEEecCC--ce--EEeeecccCCCeEEEEEcCCCCEEEEEeCCC
Q 009715 280 GSINSIAFSTDGTYLATVG-----------RDG-YLRVFDYSK--EQ--LICGGKSYYGALLCCAWSMDGKYILTGGEDD 343 (528)
Q Consensus 280 ~~v~~l~~spdg~~l~s~~-----------~dg-~i~vwd~~~--~~--~~~~~~~~~~~v~~l~~sp~g~~l~sg~~dg 343 (528)
.....|+|.++|+++++-. ..+ .|.+++-.+ ++ ....+.........+++.+++ +++ +....
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPD 91 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCe
Confidence 4566899999999777653 223 676665432 22 223333233456789999998 444 44444
Q ss_pred cEEEEECCC-------CeEEEE-eec----CCCCeEEEEEec
Q 009715 344 LVQVWSMED-------RKVVAW-GEG----HNSWVSGVAFDS 373 (528)
Q Consensus 344 ~v~vwd~~~-------~~~~~~-~~~----h~~~V~~v~f~p 373 (528)
..++.|.+. .+.+.. +.. +......++|.|
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gp 133 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGP 133 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECC
Confidence 334445432 122222 222 234577899999
No 428
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=89.64 E-value=0.34 Score=51.93 Aligned_cols=159 Identities=16% Similarity=0.250 Sum_probs=80.0
Q ss_pred CCCCCeEEEEecCCcEEEEEccccccccccceeeeeeeccCCcccCCceeEEE-----------EeeCCCcEEEEEeCCc
Q 009715 165 AKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVT-----------WVPGGDGAFVVGHADG 233 (528)
Q Consensus 165 ~~~~~~l~~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~-----------~~p~g~~~l~tg~~dg 233 (528)
.++.-++-++..+|.|.+.++.+..+. +. ..|...+++++ .+|||. .|+.++.||
T Consensus 192 ~~~~~~ic~~~~~~~i~lL~~~ra~~~----l~---------rsHs~~~~d~a~~~~g~~~l~~lSpDGt-v~a~a~~dG 257 (1283)
T KOG1916|consen 192 AVNKVYICYGLKGGEIRLLNINRALRS----LF---------RSHSQRVTDMAFFAEGVLKLASLSPDGT-VFAWAISDG 257 (1283)
T ss_pred ccccceeeeccCCCceeEeeechHHHH----HH---------HhcCCCcccHHHHhhchhhheeeCCCCc-EEEEeecCC
Confidence 344456667788888888777653221 10 01333333333 578998 899999999
Q ss_pred eEEEEEcCCCCCCCCccc-cccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCCCCEEEEE-eCCCcEEEEecCCc
Q 009715 234 NLYVYEKSKDGAGDSSFP-VIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATV-GRDGYLRVFDYSKE 311 (528)
Q Consensus 234 ~v~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~-~~dg~i~vwd~~~~ 311 (528)
.++.|.+.-.+....... .++. ....+...|..|...+..+...- ..+++++ ..+..+++|.....
T Consensus 258 ~v~f~Qiyi~g~~~~rclhewkp-----------hd~~p~vC~lc~~~~~~~v~i~~-w~~~Itttd~nre~k~w~~a~w 325 (1283)
T KOG1916|consen 258 SVGFYQIYITGKIVHRCLHEWKP-----------HDKHPRVCWLCHKQEILVVSIGK-WVLRITTTDVNREEKFWAEAPW 325 (1283)
T ss_pred ccceeeeeeeccccHhhhhccCC-----------CCCCCceeeeeccccccCCccce-eEEEEecccCCcceeEeeccch
Confidence 999888765332211100 0000 00122222323333322222211 1233333 34567888987766
Q ss_pred eEEeeecccCCCeEEEEEcCCCCE------------EEEEeCCCcEEEEECCC
Q 009715 312 QLICGGKSYYGALLCCAWSMDGKY------------ILTGGEDDLVQVWSMED 352 (528)
Q Consensus 312 ~~~~~~~~~~~~v~~l~~sp~g~~------------l~sg~~dg~v~vwd~~~ 352 (528)
+|+ +....+.|..+. -++++. ++.-+-|+.|++|.-+.
T Consensus 326 ~Cl--l~~~~d~v~iV~-p~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~qn~~ 375 (1283)
T KOG1916|consen 326 QCL--LDKLIDGVQIVG-PHDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQNRK 375 (1283)
T ss_pred hhh--hhhcccceEeec-CCCccccchhhhHHHHHHHHHhhhHHHHHHhhcch
Confidence 665 222233444444 334431 23345578888886554
No 429
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=89.25 E-value=3.3 Score=36.48 Aligned_cols=31 Identities=26% Similarity=0.417 Sum_probs=25.7
Q ss_pred CCeEEEEECCCC------CEEEEEeCCCcEEEEecCC
Q 009715 280 GSINSIAFSTDG------TYLATVGRDGYLRVFDYSK 310 (528)
Q Consensus 280 ~~v~~l~~spdg------~~l~s~~~dg~i~vwd~~~ 310 (528)
..|..++|||-| .+|++.+.++.|.||....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 479999999943 4788899999999998763
No 430
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=89.24 E-value=40 Score=37.40 Aligned_cols=111 Identities=15% Similarity=0.160 Sum_probs=75.5
Q ss_pred CeEEEEECCC-CCEEEEEeC----------CCcEEEEecCCceEEeeeccc--CCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 009715 281 SINSIAFSTD-GTYLATVGR----------DGYLRVFDYSKEQLICGGKSY--YGALLCCAWSMDGKYILTGGEDDLVQV 347 (528)
Q Consensus 281 ~v~~l~~spd-g~~l~s~~~----------dg~i~vwd~~~~~~~~~~~~~--~~~v~~l~~sp~g~~l~sg~~dg~v~v 347 (528)
.|.++.|..| +.++++|.. .|.|.+|.+...+.++....+ .+.+.++..- +|+++|.- +..|++
T Consensus 776 Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~f-ngkllA~I--n~~vrL 852 (1096)
T KOG1897|consen 776 SIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEF-NGKLLAGI--NQSVRL 852 (1096)
T ss_pred eeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhh-CCeEEEec--CcEEEE
Confidence 4666778887 677777742 377888888764444333222 3555555422 67666543 568999
Q ss_pred EECCCCeEEEEeecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccC
Q 009715 348 WSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEM 407 (528)
Q Consensus 348 wd~~~~~~~~~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~ 407 (528)
|+..+.+.++.-..|..++..+...- .| ..++.|..-+.+.+--.+.
T Consensus 853 ye~t~~~eLr~e~~~~~~~~aL~l~v-------~g------deI~VgDlm~Sitll~y~~ 899 (1096)
T KOG1897|consen 853 YEWTTERELRIECNISNPIIALDLQV-------KG------DEIAVGDLMRSITLLQYKG 899 (1096)
T ss_pred EEccccceehhhhcccCCeEEEEEEe-------cC------cEEEEeeccceEEEEEEec
Confidence 99998888777777888888888876 66 5788887777776655443
No 431
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=89.11 E-value=25 Score=36.69 Aligned_cols=117 Identities=16% Similarity=0.121 Sum_probs=66.8
Q ss_pred EEECCCCCEEEEEeCCCcEEEEecCCceEEeeecccCC---CeEEEEEcCCCCEEEEEeC-------------CCcEEEE
Q 009715 285 IAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYG---ALLCCAWSMDGKYILTGGE-------------DDLVQVW 348 (528)
Q Consensus 285 l~~spdg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~---~v~~l~~sp~g~~l~sg~~-------------dg~v~vw 348 (528)
+.+.++|.+++... ..++.+|+. |+.+..+..-.+ .-..+..-|+|++|+.+.. ...|..+
T Consensus 153 ~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivev 229 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEV 229 (477)
T ss_dssp EEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE
T ss_pred eeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEE
Confidence 66678888777655 778889986 666555432221 1356778899998887772 2235566
Q ss_pred ECCCCeEEEEee--cC-----------------------C--CCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEE
Q 009715 349 SMEDRKVVAWGE--GH-----------------------N--SWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLL 401 (528)
Q Consensus 349 d~~~~~~~~~~~--~h-----------------------~--~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~ 401 (528)
| .+|+.+..+. .| . -.++++.+++. ++ .+|+|.-.-..|.
T Consensus 230 d-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~------dd------~iivSsR~~s~V~ 296 (477)
T PF05935_consen 230 D-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPS------DD------SIIVSSRHQSAVI 296 (477)
T ss_dssp --TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETT------TT------EEEEEETTT-EEE
T ss_pred C-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCC------CC------eEEEEcCcceEEE
Confidence 6 6676655532 11 1 24788898872 44 6888888788999
Q ss_pred EEEccCCeEEEEeecC
Q 009715 402 LWDLEMDEIVVPLRRG 417 (528)
Q Consensus 402 lwd~~~~~~~~~~~~~ 417 (528)
..|.++++....+...
T Consensus 297 ~Id~~t~~i~Wilg~~ 312 (477)
T PF05935_consen 297 KIDYRTGKIKWILGPP 312 (477)
T ss_dssp EEE-TTS-EEEEES-S
T ss_pred EEECCCCcEEEEeCCC
Confidence 9999999988877653
No 432
>PRK10115 protease 2; Provisional
Probab=88.25 E-value=44 Score=36.65 Aligned_cols=111 Identities=6% Similarity=-0.058 Sum_probs=63.7
Q ss_pred CceeEEEEeeCCCcEEEEE-eCCc----eEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEE
Q 009715 211 SRCTSVTWVPGGDGAFVVG-HADG----NLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSI 285 (528)
Q Consensus 211 ~~v~~l~~~p~g~~~l~tg-~~dg----~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 285 (528)
-.+..+.|+|+++ +|+.+ ..+| .|++.|+.++......+. +.-..+
T Consensus 127 ~~l~~~~~Spdg~-~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~----------------------------~~~~~~ 177 (686)
T PRK10115 127 YTLGGMAITPDNT-IMALAEDFLSRRQYGIRFRNLETGNWYPELLD----------------------------NVEPSF 177 (686)
T ss_pred EEEeEEEECCCCC-EEEEEecCCCcEEEEEEEEECCCCCCCCcccc----------------------------CcceEE
Confidence 3467789999999 55543 3333 577888864211111110 111458
Q ss_pred EECCCCCEEEEEeCC------CcEEEEecCCc--eEEeeecccCCCeE-EEEEcCCCCEEEEEeC---CCcEEEEEC
Q 009715 286 AFSTDGTYLATVGRD------GYLRVFDYSKE--QLICGGKSYYGALL-CCAWSMDGKYILTGGE---DDLVQVWSM 350 (528)
Q Consensus 286 ~~spdg~~l~s~~~d------g~i~vwd~~~~--~~~~~~~~~~~~v~-~l~~sp~g~~l~sg~~---dg~v~vwd~ 350 (528)
+|.+|++.|+....+ ..|+.+++.++ +....+........ .+..+.++++++..+. ++.+.+|+.
T Consensus 178 ~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 178 VWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred EEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 999998877766442 36788888877 33333333223333 2333448887665433 457888885
No 433
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=87.82 E-value=15 Score=30.58 Aligned_cols=118 Identities=14% Similarity=0.095 Sum_probs=73.6
Q ss_pred EEEECCCCCEEEEEeCCCcEEEEecCCce--------EEeeecccCCCeEEEEEcC-----CCCEEEEEeCCCcEEEEEC
Q 009715 284 SIAFSTDGTYLATVGRDGYLRVFDYSKEQ--------LICGGKSYYGALLCCAWSM-----DGKYILTGGEDDLVQVWSM 350 (528)
Q Consensus 284 ~l~~spdg~~l~s~~~dg~i~vwd~~~~~--------~~~~~~~~~~~v~~l~~sp-----~g~~l~sg~~dg~v~vwd~ 350 (528)
.-.|......|++++.-|.|.|++..... .+..+. ....|.+|+--+ +...|+.|+ ...+..||+
T Consensus 3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt-~t~llaYDV 80 (136)
T PF14781_consen 3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDV 80 (136)
T ss_pred EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEc
Confidence 34566666678888889999999876332 223332 345677776443 234677775 457889999
Q ss_pred CCCeEEEEeecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEEEe
Q 009715 351 EDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPL 414 (528)
Q Consensus 351 ~~~~~~~~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~ 414 (528)
....-+..-+ -.+.|+++.+-.+-. .+ .-++..+.+..|.-||....+...++
T Consensus 81 ~~N~d~Fyke-~~DGvn~i~~g~~~~---~~-------~~l~ivGGncsi~Gfd~~G~e~fWtV 133 (136)
T PF14781_consen 81 ENNSDLFYKE-VPDGVNAIVIGKLGD---IP-------SPLVIVGGNCSIQGFDYEGNEIFWTV 133 (136)
T ss_pred ccCchhhhhh-CccceeEEEEEecCC---CC-------CcEEEECceEEEEEeCCCCcEEEEEe
Confidence 8876554433 446788888854100 01 13455555778888887766665544
No 434
>PHA03098 kelch-like protein; Provisional
Probab=87.76 E-value=14 Score=39.24 Aligned_cols=63 Identities=13% Similarity=0.194 Sum_probs=33.7
Q ss_pred CCCEEEEEeCC--------CcEEEEecCCceEEee--ecccCCCeEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCe
Q 009715 290 DGTYLATVGRD--------GYLRVFDYSKEQLICG--GKSYYGALLCCAWSMDGKYILTGGED-----DLVQVWSMEDRK 354 (528)
Q Consensus 290 dg~~l~s~~~d--------g~i~vwd~~~~~~~~~--~~~~~~~v~~l~~sp~g~~l~sg~~d-----g~v~vwd~~~~~ 354 (528)
++..++.|+.+ ..+.+||..+.+-... +.........+.+ ++++++.|+.+ ..|.+||.++.+
T Consensus 437 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 437 DGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred CCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence 45556666532 1378889886653321 1111111112222 67777777654 467888877653
No 435
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=87.65 E-value=4.2 Score=37.39 Aligned_cols=66 Identities=20% Similarity=0.305 Sum_probs=48.4
Q ss_pred ECCCCCEEEEEeCCCcEEEEecCCceEEeee-------c-------ccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 009715 287 FSTDGTYLATVGRDGYLRVFDYSKEQLICGG-------K-------SYYGALLCCAWSMDGKYILTGGEDDLVQVWSMED 352 (528)
Q Consensus 287 ~spdg~~l~s~~~dg~i~vwd~~~~~~~~~~-------~-------~~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~ 352 (528)
+..++++|++.+.+|.+++||+.+++.+... . .....|..+.++.+|.-+++-+ +|..+.||.+-
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence 3447889999999999999999988765432 1 2345677888888887666654 57788888654
Q ss_pred C
Q 009715 353 R 353 (528)
Q Consensus 353 ~ 353 (528)
+
T Consensus 97 ~ 97 (219)
T PF07569_consen 97 G 97 (219)
T ss_pred c
Confidence 3
No 436
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=87.14 E-value=72 Score=37.83 Aligned_cols=150 Identities=14% Similarity=0.164 Sum_probs=80.1
Q ss_pred hhhhhhcCCCCCceeeccCCCCCCCccccCCcccCCcc--cCCCCCCcceeeeCCCccEEEEeCCCcEEEEeCCCCCCC-
Q 009715 88 SAAAKLLGTGNGSRTLGFGGGNGGSKSISGSSRIGSLG--ASSSSTSMTNTNFDGKGTYIIFNVGDAIFISDLNSQDKD- 164 (528)
Q Consensus 88 ~~~~~~~~~~~g~~~~sf~gh~~~v~~v~~s~~~~~~~--~s~s~~s~~~~~~~~~g~~~~~~~~~~i~v~~~~~~~~~- 164 (528)
+--+.+.++.....-..++-|.+.+ ..|.+....+- -..+...-..+....||.++. -.++. +.++..+...
T Consensus 360 aH~A~LTgv~~~~~ge~lRlHd~~L--Y~~d~~~~~Wk~~~~~~d~~~S~Ls~qgdG~lYA-k~~~~--l~nLSs~~~~~ 434 (1774)
T PF11725_consen 360 AHIAHLTGVHTDPDGEQLRLHDDRL--YQFDPNTARWKPPPDKSDTPFSSLSRQGDGKLYA-KDDDT--LVNLSSGQMSE 434 (1774)
T ss_pred HHHHHhhccccCCCCCeEEeecCce--eeeccccceecCCCCcccchhhhhcccCCCceEe-cCCCc--eeecCCCCcch
Confidence 3344555555444444455666655 33444222221 122223334556667888877 33333 3344433222
Q ss_pred -----------CCCCCe-EEEEecCCcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeCC
Q 009715 165 -----------AKDGHD-LLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHAD 232 (528)
Q Consensus 165 -----------~~~~~~-l~~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~d 232 (528)
.+++.. ++.+...-.+.+|++......+.......+++.. -.....+|.++++ .|+++..+
T Consensus 435 ~~v~~l~sfSv~~~g~vA~L~~~d~q~~qL~~m~~~~a~~~p~~~~~L~L~d----G~a~A~~VgLs~d---rLFvADse 507 (1774)
T PF11725_consen 435 AEVDKLKSFSVAPDGTVAMLTGKDGQTLQLHDMSPVDAPPTPRKTKTLQLAD----GKAQAQSVGLSND---RLFVADSE 507 (1774)
T ss_pred hhhhhcccccccCCCceeeeecCCCcceeeeccCccccccCccceeeeeccC----CchhhhheeecCC---eEEEEeCC
Confidence 566766 4555555567999987643332222222232222 2236778888776 58899999
Q ss_pred ceEEEEEcCCCCCCCCc
Q 009715 233 GNLYVYEKSKDGAGDSS 249 (528)
Q Consensus 233 g~v~vwd~~~~~~~~~~ 249 (528)
|.++.=++...+.....
T Consensus 508 GkLYsa~l~~~~~~~~~ 524 (1774)
T PF11725_consen 508 GKLYSADLPAAQDNEPK 524 (1774)
T ss_pred CCEEecccccccCCCcc
Confidence 99999888764433333
No 437
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=86.98 E-value=4.6 Score=35.52 Aligned_cols=37 Identities=19% Similarity=0.181 Sum_probs=28.6
Q ss_pred CCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccC
Q 009715 364 SWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEM 407 (528)
Q Consensus 364 ~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~ 407 (528)
..|.+++|+| -|-+....-+|+....++.|.||.-..
T Consensus 86 ~~vv~~aWSP-------~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSP-------SGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECC-------CCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 4799999999 553333346889999999999998664
No 438
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=86.46 E-value=38 Score=33.92 Aligned_cols=110 Identities=15% Similarity=0.058 Sum_probs=70.3
Q ss_pred EEEEEeCCCcEEEEecCCceEEeeecccC--CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCC-CeEEE
Q 009715 293 YLATVGRDGYLRVFDYSKEQLICGGKSYY--GALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNS-WVSGV 369 (528)
Q Consensus 293 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~--~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~~~~~~~~h~~-~V~~v 369 (528)
.+..+..+|.|.-+|.++++.+.....-. ..+..-....+|+ ++.++.++.++.+|.++++.+........ .+..-
T Consensus 70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~ 148 (370)
T COG1520 70 TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASP 148 (370)
T ss_pred eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeEEecC
Confidence 45555788889999999888664332211 1222222223676 77788889999999988988877765541 11111
Q ss_pred EEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEEEeecC
Q 009715 370 AFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRG 417 (528)
Q Consensus 370 ~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~ 417 (528)
..-. ++ .+..++.|+.+.-.|..+++.+......
T Consensus 149 ~v~~-------~~-------~v~~~s~~g~~~al~~~tG~~~W~~~~~ 182 (370)
T COG1520 149 PVVG-------DG-------TVYVGTDDGHLYALNADTGTLKWTYETP 182 (370)
T ss_pred cEEc-------Cc-------EEEEecCCCeEEEEEccCCcEEEEEecC
Confidence 1111 44 4555557899999999989888776553
No 439
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=86.07 E-value=62 Score=36.07 Aligned_cols=174 Identities=14% Similarity=0.169 Sum_probs=98.8
Q ss_pred cCCceeEEEEe---e--CCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeec---CC
Q 009715 209 NNSRCTSVTWV---P--GGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHIC---QG 280 (528)
Q Consensus 209 h~~~v~~l~~~---p--~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h---~~ 280 (528)
-..+|..|+|. . +....++..-....+.|+...-... ...... ....-..+++..+..+ ..
T Consensus 78 ~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~-~~~~~~----------~~s~i~~~~l~~i~~~~tgg~ 146 (765)
T PF10214_consen 78 DGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRV-ISSIRS----------RPSRIDPNPLLTISSSDTGGF 146 (765)
T ss_pred CCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccc-cccccC----------CccccccceeEEechhhcCCC
Confidence 45689999998 2 1111244444556788887432111 000000 0001122444444432 35
Q ss_pred CeEEEEECC-CCCEEEEEeCCCcEEEEecCCce-----EEeeecccC----------CCeEEEEEcCCCCEEEEEeCCCc
Q 009715 281 SINSIAFST-DGTYLATVGRDGYLRVFDYSKEQ-----LICGGKSYY----------GALLCCAWSMDGKYILTGGEDDL 344 (528)
Q Consensus 281 ~v~~l~~sp-dg~~l~s~~~dg~i~vwd~~~~~-----~~~~~~~~~----------~~v~~l~~sp~g~~l~sg~~dg~ 344 (528)
+...++|+| +...||+....|...||++.... .+.....+. +.-..+.|.++-..|++++. ..
T Consensus 147 ~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r-~~ 225 (765)
T PF10214_consen 147 PHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR-SK 225 (765)
T ss_pred ccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-Cc
Confidence 678999999 67799999999999999992111 111111111 22347889988888888864 57
Q ss_pred EEEEECCCCeEEE-Ee-ecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccC
Q 009715 345 VQVWSMEDRKVVA-WG-EGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEM 407 (528)
Q Consensus 345 v~vwd~~~~~~~~-~~-~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~ 407 (528)
+.++|+++..... .. .....+|.++.-+| +.. .+.|+-. ...|...|+..
T Consensus 226 l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~-------~~~----~~~FiLT--s~eiiw~~~~~ 277 (765)
T PF10214_consen 226 LMLIDFESNWQTEYLVTAKTWSWILDVKRSP-------DNP----SHVFILT--SKEIIWLDVKS 277 (765)
T ss_pred eEEEECCCCCccchhccCCChhheeeEEecC-------Ccc----ceEEEEe--cCeEEEEEccC
Confidence 8899999875532 11 23556788888877 420 0233332 25677777766
No 440
>PRK10115 protease 2; Provisional
Probab=85.92 E-value=59 Score=35.69 Aligned_cols=189 Identities=8% Similarity=-0.014 Sum_probs=90.3
Q ss_pred CCCCCeEEEEecCC-----cEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeCC-----ce
Q 009715 165 AKDGHDLLIGLNSG-----DVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHAD-----GN 234 (528)
Q Consensus 165 ~~~~~~l~~g~~~G-----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~d-----g~ 234 (528)
+++++.|+.+...+ +|++.|+.+. +.+.... .... ..++|.+|++.++++...+ ..
T Consensus 135 Spdg~~la~~~d~~G~E~~~l~v~d~~tg-----~~l~~~i--------~~~~-~~~~w~~D~~~~~y~~~~~~~~~~~~ 200 (686)
T PRK10115 135 TPDNTIMALAEDFLSRRQYGIRFRNLETG-----NWYPELL--------DNVE-PSFVWANDSWTFYYVRKHPVTLLPYQ 200 (686)
T ss_pred CCCCCEEEEEecCCCcEEEEEEEEECCCC-----CCCCccc--------cCcc-eEEEEeeCCCEEEEEEecCCCCCCCE
Confidence 68888887765432 5777777541 1111000 1111 4599999998555555433 25
Q ss_pred EEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeE-EEEECCCCCEEEEEeC---CCcEEEEecC-
Q 009715 235 LYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSIN-SIAFSTDGTYLATVGR---DGYLRVFDYS- 309 (528)
Q Consensus 235 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~l~~spdg~~l~s~~~---dg~i~vwd~~- 309 (528)
|+.+++.++... ....+........ .+..+.|+++++..+. +..+.+++..
T Consensus 201 v~~h~lgt~~~~------------------------d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~ 256 (686)
T PRK10115 201 VWRHTIGTPASQ------------------------DELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAEL 256 (686)
T ss_pred EEEEECCCChhH------------------------CeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcC
Confidence 666676653111 1112221112222 2333447777665443 3568888842
Q ss_pred -CceEEeeecccCCCeEEEEEcCCCCEEEEEeC---CCcEEEEECCCCeEEEEeecC-C-CCeEEEEEecCCCCCCCCCC
Q 009715 310 -KEQLICGGKSYYGALLCCAWSMDGKYILTGGE---DDLVQVWSMEDRKVVAWGEGH-N-SWVSGVAFDSYWSQPNSDGT 383 (528)
Q Consensus 310 -~~~~~~~~~~~~~~v~~l~~sp~g~~l~sg~~---dg~v~vwd~~~~~~~~~~~~h-~-~~V~~v~f~p~~~~~~~dg~ 383 (528)
+++....+..-.+....+. +....+++.... ...|...++........+..+ . ..|..+.+.. +
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~-~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~-------~-- 326 (686)
T PRK10115 257 ADAEPFVFLPRRKDHEYSLD-HYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFT-------D-- 326 (686)
T ss_pred CCCCceEEEECCCCCEEEEE-eCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEEC-------C--
Confidence 3332222221122222222 323333333322 223444455421112233334 3 3677777764 3
Q ss_pred ccceeEEEEEEeCCCeEEEEEcc
Q 009715 384 AETVMYRFGSVGQDTRLLLWDLE 406 (528)
Q Consensus 384 ~~~~~~~l~s~s~D~~i~lwd~~ 406 (528)
.++++...++.-+++-+.
T Consensus 327 -----~l~~~~~~~g~~~l~~~~ 344 (686)
T PRK10115 327 -----WLVVEERQRGLTSLRQIN 344 (686)
T ss_pred -----EEEEEEEeCCEEEEEEEc
Confidence 578888888876666544
No 441
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=85.48 E-value=33 Score=32.33 Aligned_cols=184 Identities=9% Similarity=0.049 Sum_probs=102.8
Q ss_pred cceeeeCCCccEEEEeCCCc-EEEEeCCCCCCC-----CCCCCeEEEEecCCcEEEEEccccccccccceeeeeeeccCC
Q 009715 133 MTNTNFDGKGTYIIFNVGDA-IFISDLNSQDKD-----AKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDG 206 (528)
Q Consensus 133 ~~~~~~~~~g~~~~~~~~~~-i~v~~~~~~~~~-----~~~~~~l~~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 206 (528)
+..+..++||.+|.-..+.. +--.|-..++.. .-.....++-.-||...+-|-...+.....+.....+|....
T Consensus 64 p~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~aI~R~dpkt~evt~f~lp~ 143 (353)
T COG4257 64 PFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGLAIGRLDPKTLEVTRFPLPL 143 (353)
T ss_pred ccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcceeEEecCcccceEEeeccc
Confidence 34455567888887655432 333333333322 112233444455555555543321111111112223333333
Q ss_pred cccCCceeEEEEeeCCCcEEEEEeC---------CceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEee
Q 009715 207 SVNNSRCTSVTWVPGGDGAFVVGHA---------DGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHI 277 (528)
Q Consensus 207 ~~h~~~v~~l~~~p~g~~~l~tg~~---------dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (528)
..-........|.+.|. +-+++.. .+.|++|+...
T Consensus 144 ~~a~~nlet~vfD~~G~-lWFt~q~G~yGrLdPa~~~i~vfpaPq----------------------------------- 187 (353)
T COG4257 144 EHADANLETAVFDPWGN-LWFTGQIGAYGRLDPARNVISVFPAPQ----------------------------------- 187 (353)
T ss_pred ccCCCcccceeeCCCcc-EEEeeccccceecCcccCceeeeccCC-----------------------------------
Confidence 33456677889999998 6677642 13344554432
Q ss_pred cCCCeEEEEECCCCCEEEEEeCCCcEEEEecCCce--EEeeecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 009715 278 CQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQ--LICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDR 353 (528)
Q Consensus 278 h~~~v~~l~~spdg~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~ 353 (528)
....+.|+..|||..-++.-.+..|-..|..++. .+..-......-..+--+|.|+.-++-...+.+..||-...
T Consensus 188 -G~gpyGi~atpdGsvwyaslagnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~ 264 (353)
T COG4257 188 -GGGPYGICATPDGSVWYASLAGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVT 264 (353)
T ss_pred -CCCCcceEECCCCcEEEEeccccceEEcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCcccc
Confidence 2456788999999988887777888888877652 22222222234455666788888888777778888876543
No 442
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.44 E-value=51 Score=35.52 Aligned_cols=29 Identities=17% Similarity=0.396 Sum_probs=24.9
Q ss_pred CceeEEEEeeCCCcEEEEEeCCceEEEEEcC
Q 009715 211 SRCTSVTWVPGGDGAFVVGHADGNLYVYEKS 241 (528)
Q Consensus 211 ~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~ 241 (528)
..+-.+.|+.+.. |++-..||+++||++-
T Consensus 84 ~~lI~mgWs~~ee--LI~v~k~g~v~Vy~~~ 112 (829)
T KOG2280|consen 84 GELIGMGWSDDEE--LICVQKDGTVHVYGLL 112 (829)
T ss_pred CCeeeecccCCce--EEEEeccceEEEeecc
Confidence 3788899998875 8888899999999985
No 443
>PRK13684 Ycf48-like protein; Provisional
Probab=84.88 E-value=42 Score=33.08 Aligned_cols=105 Identities=15% Similarity=0.186 Sum_probs=60.2
Q ss_pred CCeEEEEECCCCCEEEEEeCCCcEEE-EecCCceEEeee-cccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEE
Q 009715 280 GSINSIAFSTDGTYLATVGRDGYLRV-FDYSKEQLICGG-KSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVA 357 (528)
Q Consensus 280 ~~v~~l~~spdg~~l~s~~~dg~i~v-wd~~~~~~~~~~-~~~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~~~~ 357 (528)
+.+.++.+.|++.+++++. .|.+.. +|- .++..... ..-...+..+.+.++++.++++ ..|.+++=..+.++.-.
T Consensus 173 g~~~~i~~~~~g~~v~~g~-~G~i~~s~~~-gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~ 249 (334)
T PRK13684 173 GVVRNLRRSPDGKYVAVSS-RGNFYSTWEP-GQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWS 249 (334)
T ss_pred ceEEEEEECCCCeEEEEeC-CceEEEEcCC-CCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCccc
Confidence 5788999999987666654 454432 222 22222222 2234678899999999877765 45766432344443322
Q ss_pred Eeec----CCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEE
Q 009715 358 WGEG----HNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLL 401 (528)
Q Consensus 358 ~~~~----h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~ 401 (528)
.... -...+.++.|.| ++ .++.++.+|.|.
T Consensus 250 ~~~~~~~~~~~~l~~v~~~~-------~~-------~~~~~G~~G~v~ 283 (334)
T PRK13684 250 KPIIPEITNGYGYLDLAYRT-------PG-------EIWAGGGNGTLL 283 (334)
T ss_pred cccCCccccccceeeEEEcC-------CC-------CEEEEcCCCeEE
Confidence 1111 123477888887 66 355566666554
No 444
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=84.76 E-value=0.1 Score=51.93 Aligned_cols=139 Identities=14% Similarity=0.147 Sum_probs=92.7
Q ss_pred CCCCeEEEEecCCcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCC
Q 009715 166 KDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGA 245 (528)
Q Consensus 166 ~~~~~l~~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~ 245 (528)
+.+..|+++..+-.|..||-..+.. .+. ...+...+++|.-+++..++.+...+.+.+|++.+...
T Consensus 44 ~e~~nlavaca~tiv~~YD~agq~~------------le~--n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eyt 109 (615)
T KOG2247|consen 44 PEGHNLAVACANTIVIYYDKAGQVI------------LEL--NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT 109 (615)
T ss_pred cCCCceehhhhhhHHHhhhhhccee------------ccc--CCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhH
Confidence 4455688888887888887554211 110 14456788999999986677788899999999976321
Q ss_pred CCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCCCCEEEEEeCCCcEEEEecCCceEEeeecccCCCeE
Q 009715 246 GDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALL 325 (528)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~ 325 (528)
....+.. .|+.+ -+.|++-+..++.+...|.++|++-.+.+.+-..-.|...+.
T Consensus 110 qqLE~gg------------------------~~s~s--ll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgt 163 (615)
T KOG2247|consen 110 QQLESGG------------------------TSSKS--LLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGT 163 (615)
T ss_pred HHHhccC------------------------cchHH--HHhhccCCccccccccccceEEEeccchhhhhhhccccccee
Confidence 1100000 01111 267888788888888899999999887766555544888899
Q ss_pred EEEEcCCCCEEEEEeCCCcE
Q 009715 326 CCAWSMDGKYILTGGEDDLV 345 (528)
Q Consensus 326 ~l~~sp~g~~l~sg~~dg~v 345 (528)
+++|.+.+. .+.++.|..+
T Consensus 164 q~av~lEd~-vil~dcd~~L 182 (615)
T KOG2247|consen 164 QIAVTLEDY-VILCDCDNTL 182 (615)
T ss_pred EEEecccce-eeecCcHHHH
Confidence 999998764 4555555443
No 445
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=84.60 E-value=23 Score=34.85 Aligned_cols=104 Identities=27% Similarity=0.318 Sum_probs=57.6
Q ss_pred CeEEEEECCCCCEEEEEeCCCcEEEEecCCceE---Eeee----cccCCCeEEEEEcCC----CCEEEEEeCC-------
Q 009715 281 SINSIAFSTDGTYLATVGRDGYLRVFDYSKEQL---ICGG----KSYYGALLCCAWSMD----GKYILTGGED------- 342 (528)
Q Consensus 281 ~v~~l~~spdg~~l~s~~~dg~i~vwd~~~~~~---~~~~----~~~~~~v~~l~~sp~----g~~l~sg~~d------- 342 (528)
....|+|.|||++|++ ...|.|++++ ..+.. +..+ .........++++|+ +.+.+.....
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 4568999999876664 6699999999 44443 2222 123456899999994 4333333311
Q ss_pred -CcEEEEECCCC-------eEE-EEeec---CCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCe
Q 009715 343 -DLVQVWSMEDR-------KVV-AWGEG---HNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTR 399 (528)
Q Consensus 343 -g~v~vwd~~~~-------~~~-~~~~~---h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~ 399 (528)
..|.-|.+..+ +.+ ..+.. ....-..|.|.| || +++++.+..+.
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgp-------DG------~LYvs~G~~~~ 136 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGP-------DG------KLYVSVGDGGN 136 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-T-------TS------EEEEEEB-TTT
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCC-------CC------cEEEEeCCCCC
Confidence 23443444332 112 12222 234566799999 99 77777776554
No 446
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=84.31 E-value=49 Score=34.47 Aligned_cols=42 Identities=12% Similarity=0.131 Sum_probs=26.5
Q ss_pred eEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCC
Q 009715 324 LLCCAWSM-DGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSW 365 (528)
Q Consensus 324 v~~l~~sp-~g~~l~sg~~dg~v~vwd~~~~~~~~~~~~h~~~ 365 (528)
++++.+.+ ++.+|+++-.-..|...|.++++....+-.|..+
T Consensus 273 ~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~~~w 315 (477)
T PF05935_consen 273 INSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPPGGW 315 (477)
T ss_dssp EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-STT-
T ss_pred cCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCCCCC
Confidence 68899988 4545555544558888898888888777666543
No 447
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=84.29 E-value=20 Score=36.08 Aligned_cols=142 Identities=13% Similarity=0.165 Sum_probs=84.5
Q ss_pred eeeeCCCccEEEEeCCCcEEEEeCCCCCCC----------------------CCCCCeEEEEecCCcEEEE-Eccccccc
Q 009715 135 NTNFDGKGTYIIFNVGDAIFISDLNSQDKD----------------------AKDGHDLLIGLNSGDVYSV-SLRQQLQD 191 (528)
Q Consensus 135 ~~~~~~~g~~~~~~~~~~i~v~~~~~~~~~----------------------~~~~~~l~~g~~~G~v~iw-d~~~~~~~ 191 (528)
.+-.++||+.+..-.+..+.++++...... ...+..|+++..||-|.-| |++...+
T Consensus 225 qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdvr~~~~- 303 (733)
T COG4590 225 QLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDVRRDGQ- 303 (733)
T ss_pred hhEECCCCCEEEEecCCeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeeeeecCCC-
Confidence 345567888887777888888877765333 3456788999999999877 5543111
Q ss_pred cccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCC
Q 009715 192 VGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNP 271 (528)
Q Consensus 192 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (528)
...+..+++.....++..+.=..+.+ -|++-+..|++.++.-......
T Consensus 304 ------p~l~h~R~f~l~pa~~~~l~pe~~rk-gF~~l~~~G~L~~f~st~~~~l------------------------- 351 (733)
T COG4590 304 ------PHLNHIRNFKLAPAEVQFLLPETNRK-GFYSLYRNGTLQSFYSTSEKLL------------------------- 351 (733)
T ss_pred ------CcceeeeccccCcccceeeccccccc-eEEEEcCCCceeeeecccCcce-------------------------
Confidence 11222222222233444333333333 5777777888887765431110
Q ss_pred eEEEeecCCCeEEEEECCCCCEEEEEeCCCcEEEEecCCce
Q 009715 272 IARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQ 312 (528)
Q Consensus 272 ~~~~~~h~~~v~~l~~spdg~~l~s~~~dg~i~vwd~~~~~ 312 (528)
.++.--..+.-+++||++.+|++-. .|.++++.+++..
T Consensus 352 --L~~~~~~~~~~~~~Sp~~~~Ll~e~-~gki~~~~l~Nr~ 389 (733)
T COG4590 352 --LFERAYQAPQLVAMSPNQAYLLSED-QGKIRLAQLENRN 389 (733)
T ss_pred --ehhhhhcCcceeeeCcccchheeec-CCceEEEEecCCC
Confidence 0000013566789999999888764 4779999887543
No 448
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=84.12 E-value=51 Score=33.39 Aligned_cols=113 Identities=18% Similarity=0.211 Sum_probs=63.8
Q ss_pred cCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCC--ccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEE
Q 009715 209 NNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDS--SFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIA 286 (528)
Q Consensus 209 h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 286 (528)
....++.+.|.+++. +++ .+.+|.+..= ... +.... .+..... ..-...+..+.
T Consensus 279 ~~~~l~~v~~~~dg~-l~l-~g~~G~l~~S-~d~-G~~~~~~~f~~~~~--------------------~~~~~~l~~v~ 334 (398)
T PLN00033 279 SARRIQNMGWRADGG-LWL-LTRGGGLYVS-KGT-GLTEEDFDFEEADI--------------------KSRGFGILDVG 334 (398)
T ss_pred CccceeeeeEcCCCC-EEE-EeCCceEEEe-cCC-CCcccccceeeccc--------------------CCCCcceEEEE
Confidence 345689999999988 444 4466776442 222 21110 1110000 00013588899
Q ss_pred ECCCCCEEEEEeCCCcEEEEecCCceEEeeec---ccCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 009715 287 FSTDGTYLATVGRDGYLRVFDYSKEQLICGGK---SYYGALLCCAWSMDGKYILTGGEDDLVQVW 348 (528)
Q Consensus 287 ~spdg~~l~s~~~dg~i~vwd~~~~~~~~~~~---~~~~~v~~l~~sp~g~~l~sg~~dg~v~vw 348 (528)
|.+++..+++| .+|.+... .+.++...... .....++.+.|.++++.+++| .+|.|.-|
T Consensus 335 ~~~d~~~~a~G-~~G~v~~s-~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~il~~ 396 (398)
T PLN00033 335 YRSKKEAWAAG-GSGILLRS-TDGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGVLLRY 396 (398)
T ss_pred EcCCCcEEEEE-CCCcEEEe-CCCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCcEEEEe
Confidence 99887765555 56765554 34455543332 234567899998877766665 57776544
No 449
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=83.95 E-value=5.4 Score=42.44 Aligned_cols=72 Identities=19% Similarity=0.200 Sum_probs=45.7
Q ss_pred CCCCEEEEEeCCCcEEEEecCC----ceEEee--e---------cc-----------cCCCeEEEEEcC----CCCEEEE
Q 009715 289 TDGTYLATVGRDGYLRVFDYSK----EQLICG--G---------KS-----------YYGALLCCAWSM----DGKYILT 338 (528)
Q Consensus 289 pdg~~l~s~~~dg~i~vwd~~~----~~~~~~--~---------~~-----------~~~~v~~l~~sp----~g~~l~s 338 (528)
++...|+.+..||.+....... +..... + .+ .......++++. +..++++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 4666788888999888887764 211111 0 00 123455666666 6779999
Q ss_pred EeCCCcEEEEECCCCeEEEEee
Q 009715 339 GGEDDLVQVWSMEDRKVVAWGE 360 (528)
Q Consensus 339 g~~dg~v~vwd~~~~~~~~~~~ 360 (528)
.+.|+.+|+||+.+++++....
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATID 257 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEEE
T ss_pred EeCCCeEEEEECCCCeEEEEec
Confidence 9999999999999999976653
No 450
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=83.50 E-value=48 Score=32.58 Aligned_cols=122 Identities=17% Similarity=0.260 Sum_probs=68.7
Q ss_pred cCCceeEEEEeeCCCcEEEEEeCCce------EEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCe
Q 009715 209 NNSRCTSVTWVPGGDGAFVVGHADGN------LYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSI 282 (528)
Q Consensus 209 h~~~v~~l~~~p~g~~~l~tg~~dg~------v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 282 (528)
.-+.+..|.+.+++. .+++-+.+|. ++.+++............... ..+ ......+... -.-..
T Consensus 18 ~~GGlSgl~~~~~~~-~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~L---~~~~G~~~~~---~~~D~ 87 (326)
T PF13449_consen 18 PFGGLSGLDYDPDDG-RFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDM---IPL---RDPDGQPFPK---NGLDP 87 (326)
T ss_pred ccCcEeeEEEeCCCC-EEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccc---eec---cCCCCCcCCc---CCCCh
Confidence 456788999997666 6777787887 666666542111111100000 000 0000111100 01134
Q ss_pred EEEEECCCCCEEEEEeCC------CcEEEEecCCceEEeee---------------cccCCCeEEEEEcCCCCEEEEEeC
Q 009715 283 NSIAFSTDGTYLATVGRD------GYLRVFDYSKEQLICGG---------------KSYYGALLCCAWSMDGKYILTGGE 341 (528)
Q Consensus 283 ~~l~~spdg~~l~s~~~d------g~i~vwd~~~~~~~~~~---------------~~~~~~v~~l~~sp~g~~l~sg~~ 341 (528)
-+|++.+++.++++.-.+ ..|+.++.. |+.+..+ ......+..|+++|+|+.|+++.+
T Consensus 88 Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E 166 (326)
T PF13449_consen 88 EGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAME 166 (326)
T ss_pred hHeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEEC
Confidence 477887788888887777 788888876 5543332 112456889999999996666543
No 451
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=83.48 E-value=18 Score=38.57 Aligned_cols=38 Identities=32% Similarity=0.428 Sum_probs=28.3
Q ss_pred CCeEEEEECC----CCCEEEEEeCCCcEEEEecCCceEEeee
Q 009715 280 GSINSIAFST----DGTYLATVGRDGYLRVFDYSKEQLICGG 317 (528)
Q Consensus 280 ~~v~~l~~sp----dg~~l~s~~~dg~i~vwd~~~~~~~~~~ 317 (528)
..+..+++++ +..+|++.+.|+.||+||+.+++++...
T Consensus 215 ~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 215 SVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp --EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred CccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence 3455566655 6789999999999999999999996654
No 452
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=83.20 E-value=10 Score=34.85 Aligned_cols=70 Identities=14% Similarity=0.292 Sum_probs=49.4
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCeEEEEe-------e-------cCCCCeEEEEEecCCCCCCCCCCccceeEEEEEE
Q 009715 329 WSMDGKYILTGGEDDLVQVWSMEDRKVVAWG-------E-------GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSV 394 (528)
Q Consensus 329 ~sp~g~~l~sg~~dg~v~vwd~~~~~~~~~~-------~-------~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~ 394 (528)
+..++.+|++-..+|.+++||+.+++.+..- . .....|..+..+. +| .-+++-
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~-------~G------~PiV~l 84 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTS-------NG------VPIVTL 84 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcC-------CC------CEEEEE
Confidence 4457889999999999999999998764332 1 2445677777776 77 344444
Q ss_pred eCCCeEEEEEccCCeEEE
Q 009715 395 GQDTRLLLWDLEMDEIVV 412 (528)
Q Consensus 395 s~D~~i~lwd~~~~~~~~ 412 (528)
+ ++....||...+.-+.
T Consensus 85 s-ng~~y~y~~~L~~W~~ 101 (219)
T PF07569_consen 85 S-NGDSYSYSPDLGCWIR 101 (219)
T ss_pred e-CCCEEEeccccceeEE
Confidence 3 5778899877665443
No 453
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=82.49 E-value=7.2 Score=24.55 Aligned_cols=31 Identities=23% Similarity=0.167 Sum_probs=24.0
Q ss_pred CCCCEEEEEe-CCCcEEEEECCCCeEEEEeec
Q 009715 331 MDGKYILTGG-EDDLVQVWSMEDRKVVAWGEG 361 (528)
Q Consensus 331 p~g~~l~sg~-~dg~v~vwd~~~~~~~~~~~~ 361 (528)
|++++|+++. .++.|.++|..+++.+..+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 5777666655 478999999998888877764
No 454
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=81.63 E-value=51 Score=31.64 Aligned_cols=70 Identities=13% Similarity=0.046 Sum_probs=45.1
Q ss_pred EeCCCcEEEEECCCCeEEEEee--cCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEEEeec
Q 009715 339 GGEDDLVQVWSMEDRKVVAWGE--GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRR 416 (528)
Q Consensus 339 g~~dg~v~vwd~~~~~~~~~~~--~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~ 416 (528)
|-.-|.|-+||+. +..++++. +.-..-+.|+..|. .-+...-.+|+----||+|..+|..+++.+-.+..
T Consensus 218 G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa-------~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~ 289 (336)
T TIGR03118 218 GAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPE-------SFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLD 289 (336)
T ss_pred CCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChh-------hhCCCCCCeEEeecCCceeEEecCCCCceeeeecC
Confidence 4445789999986 67777664 23344556666551 10011114666666799999999999988776654
No 455
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=81.54 E-value=61 Score=32.42 Aligned_cols=112 Identities=16% Similarity=0.070 Sum_probs=65.5
Q ss_pred CCCEEEEEeCCCcEEEEecCCceEEeeecccC-CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCCeEE
Q 009715 290 DGTYLATVGRDGYLRVFDYSKEQLICGGKSYY-GALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSG 368 (528)
Q Consensus 290 dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~-~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~ 368 (528)
+|+ |+.++.++.+..+|..+|+.+....... ..+..-..-.++ .+..++.++.+.-.|-.+++.+.....-.. +..
T Consensus 111 ~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~~-~~~ 187 (370)
T COG1520 111 DGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASPPVVGDG-TVYVGTDDGHLYALNADTGTLKWTYETPAP-LSL 187 (370)
T ss_pred CCe-EEEecccceEEEEECCCCcEEEEEecCCCeEEecCcEEcCc-EEEEecCCCeEEEEEccCCcEEEEEecCCc-ccc
Confidence 665 7788888999999998899888776544 111111222234 344444788888888888887666442111 100
Q ss_pred -EEEecCCCCCCCCCCccceeEEEEEEeC--CCeEEEEEccCCeEEEEee
Q 009715 369 -VAFDSYWSQPNSDGTAETVMYRFGSVGQ--DTRLLLWDLEMDEIVVPLR 415 (528)
Q Consensus 369 -v~f~p~~~~~~~dg~~~~~~~~l~s~s~--D~~i~lwd~~~~~~~~~~~ 415 (528)
+...| -..++ .+..+.. ++.+.-.|..+++......
T Consensus 188 ~~~~~~----~~~~~-------~vy~~~~~~~~~~~a~~~~~G~~~w~~~ 226 (370)
T COG1520 188 SIYGSP----AIASG-------TVYVGSDGYDGILYALNAEDGTLKWSQK 226 (370)
T ss_pred ccccCc----eeecc-------eEEEecCCCcceEEEEEccCCcEeeeee
Confidence 00000 00144 4555544 6667777888888877654
No 456
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=81.47 E-value=38 Score=32.42 Aligned_cols=52 Identities=15% Similarity=0.311 Sum_probs=35.9
Q ss_pred CcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEe------CCceEEEEEcCC
Q 009715 178 GDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGH------ADGNLYVYEKSK 242 (528)
Q Consensus 178 G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~------~dg~v~vwd~~~ 242 (528)
..|++||... .++...+..-.+.|++|.|..+.+ +++.|. ....+..||+..
T Consensus 16 ~~lC~yd~~~------------~qW~~~g~~i~G~V~~l~~~~~~~-Llv~G~ft~~~~~~~~la~yd~~~ 73 (281)
T PF12768_consen 16 PGLCLYDTDN------------SQWSSPGNGISGTVTDLQWASNNQ-LLVGGNFTLNGTNSSNLATYDFKN 73 (281)
T ss_pred CEEEEEECCC------------CEeecCCCCceEEEEEEEEecCCE-EEEEEeeEECCCCceeEEEEecCC
Confidence 3688999876 234444444567899999996665 777764 355678888765
No 457
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=80.79 E-value=42 Score=30.25 Aligned_cols=83 Identities=18% Similarity=0.215 Sum_probs=52.7
Q ss_pred CCCEEEEEeCCCcEEEEecCCceEEeee----ccc-CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEee----
Q 009715 290 DGTYLATVGRDGYLRVFDYSKEQLICGG----KSY-YGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGE---- 360 (528)
Q Consensus 290 dg~~l~s~~~dg~i~vwd~~~~~~~~~~----~~~-~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~~~~~~~---- 360 (528)
|++.|..+.....++.-|.++...+... .+. -..++.+.|- ||...|=.-.+..|...|.++|+.+.++.
T Consensus 139 d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~~widlS~L 217 (262)
T COG3823 139 DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRVVAWIDLSGL 217 (262)
T ss_pred CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcEEEEEEccCC
Confidence 5666777766667888887655433322 211 1234455555 67666666566677778888888877764
Q ss_pred --------cCCCCeEEEEEec
Q 009715 361 --------GHNSWVSGVAFDS 373 (528)
Q Consensus 361 --------~h~~~V~~v~f~p 373 (528)
.|.+-.+.+++.|
T Consensus 218 ~~~~~~~~~~~nvlNGIA~~~ 238 (262)
T COG3823 218 LKELNLDKSNDNVLNGIAHDP 238 (262)
T ss_pred chhcCccccccccccceeecC
Confidence 2445678899988
No 458
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.54 E-value=90 Score=33.77 Aligned_cols=53 Identities=21% Similarity=0.296 Sum_probs=38.9
Q ss_pred CCeEEEEECCCCCEEEEEeCCCcEEEEecCCceEEeeeccc-CCCeEEEEEcCC
Q 009715 280 GSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSY-YGALLCCAWSMD 332 (528)
Q Consensus 280 ~~v~~l~~spdg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~-~~~v~~l~~sp~ 332 (528)
..+.-+..||+.++|+.-..+|.|.+-+.+..++++.+... ..+-..++|.-+
T Consensus 217 ~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcgn 270 (829)
T KOG2280|consen 217 SSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGN 270 (829)
T ss_pred ceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceeecC
Confidence 56778899999999999999999999999877777666521 122235566543
No 459
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=80.29 E-value=46 Score=30.22 Aligned_cols=56 Identities=23% Similarity=0.397 Sum_probs=39.6
Q ss_pred CEEEEEeCCCcEEEEecC--CceEEeeecccCCCeEEEEEcCCCCEEEEEeCC---C---cEEEE
Q 009715 292 TYLATVGRDGYLRVFDYS--KEQLICGGKSYYGALLCCAWSMDGKYILTGGED---D---LVQVW 348 (528)
Q Consensus 292 ~~l~s~~~dg~i~vwd~~--~~~~~~~~~~~~~~v~~l~~sp~g~~l~sg~~d---g---~v~vw 348 (528)
..|+.+...+.|.+|++. ..+.+..+.. -+.|..+.++..|+||++-=++ . .+|+|
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y 92 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAY 92 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEE
Confidence 344444566789999998 3455666654 3789999999999999985332 2 56665
No 460
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=80.09 E-value=71 Score=32.34 Aligned_cols=106 Identities=17% Similarity=0.171 Sum_probs=62.2
Q ss_pred CCeEEEEECCCCCEEEEEeCCCcEEEEecCCc--eEEeeecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe---
Q 009715 280 GSINSIAFSTDGTYLATVGRDGYLRVFDYSKE--QLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRK--- 354 (528)
Q Consensus 280 ~~v~~l~~spdg~~l~s~~~dg~i~vwd~~~~--~~~~~~~~~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~--- 354 (528)
+....+..++|+.+++.+..-..++-||--.. +.+. ......+..+.|.+++.+++++ .+|.+. +....++
T Consensus 239 Gsf~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~--~~~~~~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~G~~~~ 314 (398)
T PLN00033 239 GTFSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHN--RASARRIQNMGWRADGGLWLLT-RGGGLY-VSKGTGLTEE 314 (398)
T ss_pred cceeeEEEcCCCCEEEEECCccEEEecCCCCcceEEec--CCCccceeeeeEcCCCCEEEEe-CCceEE-EecCCCCccc
Confidence 44556677889887777765433344543211 2221 2234568889999999877766 556553 4444443
Q ss_pred --EEEEeec--CCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEE
Q 009715 355 --VVAWGEG--HNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLW 403 (528)
Q Consensus 355 --~~~~~~~--h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lw 403 (528)
....+.. -...+.++.|.+ ++ .++.++..|.+...
T Consensus 315 ~~~f~~~~~~~~~~~l~~v~~~~-------d~-------~~~a~G~~G~v~~s 353 (398)
T PLN00033 315 DFDFEEADIKSRGFGILDVGYRS-------KK-------EAWAAGGSGILLRS 353 (398)
T ss_pred ccceeecccCCCCcceEEEEEcC-------CC-------cEEEEECCCcEEEe
Confidence 1222221 123588899987 76 46667777876654
No 461
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=79.60 E-value=8.7 Score=23.89 Aligned_cols=29 Identities=31% Similarity=0.443 Sum_probs=19.3
Q ss_pred cCCCeEEEEEcCCCCEEEEEe-CC--CcEEEE
Q 009715 320 YYGALLCCAWSMDGKYILTGG-ED--DLVQVW 348 (528)
Q Consensus 320 ~~~~v~~l~~sp~g~~l~sg~-~d--g~v~vw 348 (528)
....-....|+|||++|+-.+ .+ |.-.||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 445667889999999887554 45 555555
No 462
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=79.26 E-value=50 Score=34.03 Aligned_cols=106 Identities=15% Similarity=0.199 Sum_probs=57.6
Q ss_pred eeeeCCCccEEEEeCCCc-EEEEeCCCCCCC---------------------------CCCCCeEEEEecCCcEEEEEcc
Q 009715 135 NTNFDGKGTYIIFNVGDA-IFISDLNSQDKD---------------------------AKDGHDLLIGLNSGDVYSVSLR 186 (528)
Q Consensus 135 ~~~~~~~g~~~~~~~~~~-i~v~~~~~~~~~---------------------------~~~~~~l~~g~~~G~v~iwd~~ 186 (528)
++.+++| ++..|+..+. +.+..++.+... ++.|..++..+.+|.+.++ +.
T Consensus 55 ~~~~~gD-~lf~Wd~~ds~Llv~~lR~~~~~~~~~a~~q~q~l~P~~~V~feV~~vl~s~~GS~VaL~G~~Gi~vMe-Lp 132 (741)
T KOG4460|consen 55 VVFGLGD-ELFLWDGEDSSLLVVRLRGPSGGGEEPALSQYQRLLPINPVLFEVYQVLLSPTGSHVALIGIKGLMVME-LP 132 (741)
T ss_pred hhcccCC-EEEEEecCcceEEEEEeccCCCCcccccccccceeccCCcceEEEEEEEecCCCceEEEecCCeeEEEE-ch
Confidence 3455556 8888987764 566666632211 7788888888888755443 32
Q ss_pred cc-----ccccccceeeeeeeccCCc--c--cCCceeEEEEeeCC--CcEEEEEeCCceEEEEEcCC
Q 009715 187 QQ-----LQDVGKKLVGAHHYNKDGS--V--NNSRCTSVTWVPGG--DGAFVVGHADGNLYVYEKSK 242 (528)
Q Consensus 187 ~~-----~~~~~~~~~~~~~~~~~~~--~--h~~~v~~l~~~p~g--~~~l~tg~~dg~v~vwd~~~ 242 (528)
.. ....++..+.+..+.-... . ..-.+...+|+|+. +..|+.-..|..|++|++..
T Consensus 133 ~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~ 199 (741)
T KOG4460|consen 133 KRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSE 199 (741)
T ss_pred hhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEEEEecCcEEEEEecCC
Confidence 11 1112222222222111100 0 12235567777766 33566666777788887765
No 463
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=79.02 E-value=4.5 Score=42.83 Aligned_cols=77 Identities=18% Similarity=0.373 Sum_probs=54.6
Q ss_pred CCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEEEeecCCCCCCCeecCCCCCccCCceeeeec
Q 009715 363 NSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGT 442 (528)
Q Consensus 363 ~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~d~~~~~g~ 442 (528)
...++++.-+| .| .-++.+..|+.|++|++...+...
T Consensus 14 ~e~~~aiqshp-------~~------~s~v~~~~d~si~lfn~~~r~qsk------------------------------ 50 (1636)
T KOG3616|consen 14 DEFTTAIQSHP-------GG------QSFVLAHQDGSIILFNFIPRRQSK------------------------------ 50 (1636)
T ss_pred cceeeeeeecC-------CC------ceEEEEecCCcEEEEeecccchhh------------------------------
Confidence 34577788888 77 679999999999999975433211
Q ss_pred CCCCceeeecCCCCceEEeecCCCCeEEEEEeCCeEEEEECCCeEEEEeCCCCccccC
Q 009715 443 LQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQESVLTVCREGHIKIWMRPGVAESQS 500 (528)
Q Consensus 443 ~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~~s~d~l~t~s~Dg~i~iW~~~~~~~~~~ 500 (528)
+|. -..+-..+.|...+|+++..|+.+.-|...+-.+.++
T Consensus 51 ------i~~------------~~~p~~nlv~tnhgl~~~tsdrr~la~~~dgvvqqqf 90 (1636)
T KOG3616|consen 51 ------ICE------------EAKPKENLVFTNHGLVTATSDRRALAWKEDGVVQQQF 90 (1636)
T ss_pred ------hhh------------hcCCccceeeeccceEEEeccchhheeeccCcchhhc
Confidence 010 0123356778888999999999999999877555444
No 464
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=78.29 E-value=13 Score=37.22 Aligned_cols=160 Identities=21% Similarity=0.338 Sum_probs=91.6
Q ss_pred CCCCCeEEEEecCCcEEEEEccccccccccceeeeeeeccCCcc-cCCcee-EEEEeeCCCcEEEEEeCCceEEEE-EcC
Q 009715 165 AKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSV-NNSRCT-SVTWVPGGDGAFVVGHADGNLYVY-EKS 241 (528)
Q Consensus 165 ~~~~~~l~~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~-~l~~~p~g~~~l~tg~~dg~v~vw-d~~ 241 (528)
.||++.|.+-.. .++.++++..+.-...+ +. .+... ....|+ .+..-..|. -|++++.||-|.-| |.+
T Consensus 229 ~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rk-l~------~dspg~~~~~Vte~l~lL~Gg~-SLLv~~~dG~vsQWFdvr 299 (733)
T COG4590 229 TPDGKTLYVRTG-SELVVALLDKRSLQIRK-LV------DDSPGDSRHQVTEQLYLLSGGF-SLLVVHEDGLVSQWFDVR 299 (733)
T ss_pred CCCCCEEEEecC-CeEEEEeecccccchhh-hh------hcCCCchHHHHHHHHHHHhCce-eEEEEcCCCceeeeeeee
Confidence 899999987666 58888888763222111 11 11000 111222 222334555 68888999988777 444
Q ss_pred CCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCCCCEEEEEeCCCcEEEEecCCceEEeeecccC
Q 009715 242 KDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYY 321 (528)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 321 (528)
.++.. . .+.++.++....++..+.--.+.+-+++-+.+|.+.++.....+.+..-.. .
T Consensus 300 ~~~~p--~-------------------l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~-~ 357 (733)
T COG4590 300 RDGQP--H-------------------LNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERA-Y 357 (733)
T ss_pred cCCCC--c-------------------ceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhh-h
Confidence 43221 1 122222222223343333333445677778888888887665555443332 2
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEE
Q 009715 322 GALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVV 356 (528)
Q Consensus 322 ~~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~~~~ 356 (528)
..+.-+++||++.++++- +.|.++++.+++..+-
T Consensus 358 ~~~~~~~~Sp~~~~Ll~e-~~gki~~~~l~Nr~Pe 391 (733)
T COG4590 358 QAPQLVAMSPNQAYLLSE-DQGKIRLAQLENRNPE 391 (733)
T ss_pred cCcceeeeCcccchheee-cCCceEEEEecCCCCC
Confidence 356678999999998875 4578999988876543
No 465
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=77.57 E-value=1.2e+02 Score=33.66 Aligned_cols=130 Identities=14% Similarity=0.082 Sum_probs=77.3
Q ss_pred CceeEEEEee------CCCcEEEEEeC----CceEEEEEcCCCCCCCC-ccccccccceeEEeccCCCCCCCeEEEee--
Q 009715 211 SRCTSVTWVP------GGDGAFVVGHA----DGNLYVYEKSKDGAGDS-SFPVIKDQTQFSVAHPRYSKSNPIARWHI-- 277 (528)
Q Consensus 211 ~~v~~l~~~p------~g~~~l~tg~~----dg~v~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 277 (528)
..++.+.|-+ ....+|++... ...|.-|.+........ .|+...... .......+...|+.
T Consensus 181 ~~LthL~ils~~~~~~~~p~Ili~~~~~~~~~SiI~RweL~~~~~~lh~~F~ql~s~~------~~~~~~~~~~~l~~~~ 254 (753)
T PF11635_consen 181 YQLTHLEILSPTPDKDSAPEILIVYSSPNTPSSIIERWELREEQQPLHPAFQQLGSKK------NSSSEPPPTYRLRRLD 254 (753)
T ss_pred ccceeEEEeccCCCCCCCCeEEEEEEcCCCCCcEEEEEEEEccCcccchhhhhcCCCC------cCCCCCCCceeEEEec
Confidence 4677888876 22225555432 34699999986432211 111111000 00012223333333
Q ss_pred ---cCCCeEEEEECCCCCEEEEEeCCCcEEEEecCCceEEeee----c-----------c----cCCCeEEEEEcCCCCE
Q 009715 278 ---CQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGG----K-----------S----YYGALLCCAWSMDGKY 335 (528)
Q Consensus 278 ---h~~~v~~l~~spdg~~l~s~~~dg~i~vwd~~~~~~~~~~----~-----------~----~~~~v~~l~~sp~g~~ 335 (528)
....|.++....-+.+++....||.|.++|..+.+.+... . + .-..+..++|||++.-
T Consensus 255 ~i~~~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~ 334 (753)
T PF11635_consen 255 DITLNKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCS 334 (753)
T ss_pred ccccCCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccce
Confidence 2367888888887889999999999999998776444322 0 0 0113445889999998
Q ss_pred EEEEeCCCcEE
Q 009715 336 ILTGGEDDLVQ 346 (528)
Q Consensus 336 l~sg~~dg~v~ 346 (528)
++.-..++.+.
T Consensus 335 ~v~~~~~~~~~ 345 (753)
T PF11635_consen 335 LVQIDEDGKTK 345 (753)
T ss_pred EEEEecCCCce
Confidence 88888888866
No 466
>PHA02790 Kelch-like protein; Provisional
Probab=76.83 E-value=42 Score=35.06 Aligned_cols=59 Identities=14% Similarity=0.050 Sum_probs=30.5
Q ss_pred CCCEEEEEeCCCcEEEEecCCceEEe--eecccCCCeEEEEEcCCCCEEEEEeCC-----CcEEEEECCCC
Q 009715 290 DGTYLATVGRDGYLRVFDYSKEQLIC--GGKSYYGALLCCAWSMDGKYILTGGED-----DLVQVWSMEDR 353 (528)
Q Consensus 290 dg~~l~s~~~dg~i~vwd~~~~~~~~--~~~~~~~~v~~l~~sp~g~~l~sg~~d-----g~v~vwd~~~~ 353 (528)
+++..+.| |.+.+||.++.+-.. .+....... .++ .-++++.+.|+.+ ..|..||.++.
T Consensus 407 ~~~IYv~G---G~~e~ydp~~~~W~~~~~m~~~r~~~-~~~-v~~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 407 GRRLFLVG---RNAEFYCESSNTWTLIDDPIYPRDNP-ELI-IVDNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred CCEEEEEC---CceEEecCCCCcEeEcCCCCCCcccc-EEE-EECCEEEEECCcCCCcccceEEEEECCCC
Confidence 45555555 356788887654322 121111112 222 2367777787754 34666666554
No 467
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=76.34 E-value=59 Score=29.36 Aligned_cols=184 Identities=15% Similarity=0.168 Sum_probs=93.7
Q ss_pred CCCEEEEEeCC--CcEEEEecCCceEEeeecccCCCeEEEEEcCCCCE-EEEEeCCCcEEEEECCCCeEEEEeecCCCCe
Q 009715 290 DGTYLATVGRD--GYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKY-ILTGGEDDLVQVWSMEDRKVVAWGEGHNSWV 366 (528)
Q Consensus 290 dg~~l~s~~~d--g~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~g~~-l~sg~~dg~v~vwd~~~~~~~~~~~~h~~~V 366 (528)
+|.++.+.+.- ..|++||+.+++.+..-+-....+..=-...-+.+ ....-.++.-.++|.++.+++..+. .++.=
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~-y~GeG 133 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS-YEGEG 133 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc-cCCcc
Confidence 45666666543 46999999999887654322111111001111222 2233457888889998888776665 44444
Q ss_pred EEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEEEeecCCCCCCCeecCCCCCccCCceeeeecCCCC
Q 009715 367 SGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPA 446 (528)
Q Consensus 367 ~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~d~~~~~g~~~~~ 446 (528)
..++. |+ ..|+.+....+++.-|-++-....++.. .-++ .++
T Consensus 134 WgLt~---------d~------~~LimsdGsatL~frdP~tfa~~~~v~V---------T~~g--------~pv------ 175 (262)
T COG3823 134 WGLTS---------DD------KNLIMSDGSATLQFRDPKTFAELDTVQV---------TDDG--------VPV------ 175 (262)
T ss_pred eeeec---------CC------cceEeeCCceEEEecCHHHhhhcceEEE---------EECC--------eec------
Confidence 55655 44 2344444445666666554433322221 0011 000
Q ss_pred ceeeecCCCCceEEeecCCCCeEEEEEeCCeEEEEE-CCCeEEEE-eCCCCccccC--CCccce---EEEccCC-ceEEE
Q 009715 447 PSMRDVPKLSPLVAHRVHTEPLSGLIFTQESVLTVC-REGHIKIW-MRPGVAESQS--SSSETV---LSTSSKD-KPLLS 518 (528)
Q Consensus 447 ~~~~d~~~~~~~~~~~~h~~~V~~l~~s~d~l~t~s-~Dg~i~iW-~~~~~~~~~~--~~~~~v---l~~spd~-~~l~s 518 (528)
..+..++--.+.+++=.|-.+.|+-.- ..|.|.-| |+..-..... .....| +|..|++ +++++
T Consensus 176 ---------~~LNELE~VdG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iT 246 (262)
T COG3823 176 ---------SKLNELEWVDGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLIT 246 (262)
T ss_pred ---------ccccceeeeccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEe
Confidence 112222333556666667666665554 33566555 5554332222 122233 8888877 66677
Q ss_pred eee
Q 009715 519 SKV 521 (528)
Q Consensus 519 ~~~ 521 (528)
|+.
T Consensus 247 GK~ 249 (262)
T COG3823 247 GKL 249 (262)
T ss_pred cCc
Confidence 653
No 468
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=75.83 E-value=78 Score=30.45 Aligned_cols=207 Identities=15% Similarity=0.174 Sum_probs=98.9
Q ss_pred eeeeCCCccEEEEeCCCcEEEEeCCCCCCCCCCCCeEEEEecCCcEEEEEccccccccccceeeeeeeccCCcccCCcee
Q 009715 135 NTNFDGKGTYIIFNVGDAIFISDLNSQDKDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCT 214 (528)
Q Consensus 135 ~~~~~~~g~~~~~~~~~~i~v~~~~~~~~~~~~~~~l~~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 214 (528)
.+..|..+++|+.+.|..- ....... ..+ -+|.+||+.+. .+.....+..+.....+.++
T Consensus 5 ~v~iD~~~rLWVlD~G~~~----~~~~~~~-~~~---------pKLv~~Dl~t~------~li~~~~~p~~~~~~~s~ln 64 (287)
T PF03022_consen 5 RVQIDECGRLWVLDSGRPN----GLQPPKQ-VCP---------PKLVAFDLKTN------QLIRRYPFPPDIAPPDSFLN 64 (287)
T ss_dssp EEEE-TTSEEEEEE-CCHS----SSSTTGH-TS-----------EEEEEETTTT------CEEEEEE--CCCS-TCGGEE
T ss_pred EEEEcCCCCEEEEeCCCcC----CCCCCCC-CCC---------cEEEEEECCCC------cEEEEEECChHHcccccccc
Confidence 3556788999999877631 1100000 000 14556666541 12223334433333566788
Q ss_pred EEEEeeCC-----CcEEEEEeCCceEEEEEcCCCCCCCC---ccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEE
Q 009715 215 SVTWVPGG-----DGAFVVGHADGNLYVYEKSKDGAGDS---SFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIA 286 (528)
Q Consensus 215 ~l~~~p~g-----~~~l~tg~~dg~v~vwd~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 286 (528)
.+.+.... ....++=...+-|.|+|+.++..... .+........+.+ .... ++. ...+..++
T Consensus 65 dl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i-------~g~~--~~~-~dg~~gia 134 (287)
T PF03022_consen 65 DLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTI-------GGES--FQW-PDGIFGIA 134 (287)
T ss_dssp EEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEE-------TTEE--EEE-TTSEEEEE
T ss_pred eEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccccceec-------cCce--Eec-CCCccccc
Confidence 88887632 21333444456889999987321100 0000000011110 0111 111 23488888
Q ss_pred ECC---CCCEEEEEeCCCcEEEEecCC-----ce---------EEeeeccc-CCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 009715 287 FST---DGTYLATVGRDGYLRVFDYSK-----EQ---------LICGGKSY-YGALLCCAWSMDGKYILTGGEDDLVQVW 348 (528)
Q Consensus 287 ~sp---dg~~l~s~~~dg~i~vwd~~~-----~~---------~~~~~~~~-~~~v~~l~~sp~g~~l~sg~~dg~v~vw 348 (528)
.+| +++.|......+ -++|.+.+ .. .++.+ +. ....-.++.+++|.++++--..+.|..|
T Consensus 135 l~~~~~d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~~l-G~k~~~s~g~~~D~~G~ly~~~~~~~aI~~w 212 (287)
T PF03022_consen 135 LSPISPDGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQALASQVQDL-GDKGSQSDGMAIDPNGNLYFTDVEQNAIGCW 212 (287)
T ss_dssp E-TTSTTS-EEEEEETT--SEEEEEEHHHHCSTT--HHH-HHHT-EEE-EE---SECEEEEETTTEEEEEECCCTEEEEE
T ss_pred cCCCCCCccEEEEEeCCC-CcEEEEEHHHhhCccccccccccccceec-cccCCCCceEEECCCCcEEEecCCCCeEEEE
Confidence 877 677787776544 23443321 11 11111 11 1345568889999988888889999999
Q ss_pred ECCCCe---EEEEe-ec-C-CCCeEEEEEec
Q 009715 349 SMEDRK---VVAWG-EG-H-NSWVSGVAFDS 373 (528)
Q Consensus 349 d~~~~~---~~~~~-~~-h-~~~V~~v~f~p 373 (528)
+....- .+..+ +. . -.++.++.+.+
T Consensus 213 ~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~ 243 (287)
T PF03022_consen 213 DPDGPYTPENFEILAQDPRTLQWPDGLKIDP 243 (287)
T ss_dssp ETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T
T ss_pred eCCCCcCccchheeEEcCceeeccceeeecc
Confidence 988621 11112 21 2 35777888764
No 469
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=75.39 E-value=62 Score=33.27 Aligned_cols=122 Identities=11% Similarity=0.132 Sum_probs=70.9
Q ss_pred CCCeEEEeecCCCeEEEEECCCCC-------EEEEEeCCCcEEEEecC-CceEEee--ecccC--CCeEEEEEcCCCCEE
Q 009715 269 SNPIARWHICQGSINSIAFSTDGT-------YLATVGRDGYLRVFDYS-KEQLICG--GKSYY--GALLCCAWSMDGKYI 336 (528)
Q Consensus 269 ~~~~~~~~~h~~~v~~l~~spdg~-------~l~s~~~dg~i~vwd~~-~~~~~~~--~~~~~--~~v~~l~~sp~g~~l 336 (528)
...+..|..|..- -+.|.|+.+ .-++|-.+..|.-.|.+ .|..+.. .+.+. ....+..-. ..-|+
T Consensus 500 GkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esKdY~tKn~Fss~~tT-esGyI 576 (776)
T COG5167 500 GKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESKDYKTKNKFSSGMTT-ESGYI 576 (776)
T ss_pred ceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeehhccccccccccccc-cCceE
Confidence 3566777777654 567777432 23444455555555654 2322222 22111 122222222 33489
Q ss_pred EEEeCCCcEEEEECCCCeEEEEeecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccC
Q 009715 337 LTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEM 407 (528)
Q Consensus 337 ~sg~~dg~v~vwd~~~~~~~~~~~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~ 407 (528)
|+++..|-|++||--..+....+.+....|..|.... +| .++++.+ ...|.+-|++-
T Consensus 577 a~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta-------~G------k~ilaTC-k~yllL~d~~i 633 (776)
T COG5167 577 AAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTA-------NG------KHILATC-KNYLLLTDVPI 633 (776)
T ss_pred EEecCCCceeeehhhcchhhhcCcccccceeeeEeec-------CC------cEEEEee-cceEEEEeccc
Confidence 9999999999999654444444566778888898888 88 4554444 45677777653
No 470
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=75.24 E-value=33 Score=39.29 Aligned_cols=158 Identities=11% Similarity=0.142 Sum_probs=85.6
Q ss_pred eCCCcEEEEecCCceEEeeecccCCCeEEEEEc--------CCCCEEEEEeCCCcEEEEECCCC----eE---E--EEee
Q 009715 298 GRDGYLRVFDYSKEQLICGGKSYYGALLCCAWS--------MDGKYILTGGEDDLVQVWSMEDR----KV---V--AWGE 360 (528)
Q Consensus 298 ~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s--------p~g~~l~sg~~dg~v~vwd~~~~----~~---~--~~~~ 360 (528)
+.|..+.+|+++++.....+.+....|..|..- |.=+++++-..--.|.|+-+... .. . .++.
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~ 175 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS 175 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence 457889999999876666666666666666542 23345555445555666654321 11 0 1122
Q ss_pred cCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCCeEEEEeecCCCCCCCeecCCCCCccCCceeee
Q 009715 361 GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPV 440 (528)
Q Consensus 361 ~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~d~~~~~ 440 (528)
-....|+++.... +| +++-+|.|+ .+|.+.-...---+.. ....+..+.+. ....
T Consensus 176 ~dg~~V~~I~~t~-------nG-------RIF~~G~dg--~lyEl~Yq~~~gWf~~--rc~Kiclt~s~----ls~l--- 230 (1311)
T KOG1900|consen 176 VDGVSVNCITYTE-------NG-------RIFFAGRDG--NLYELVYQAEDGWFGS--RCRKICLTKSV----LSSL--- 230 (1311)
T ss_pred cCCceEEEEEecc-------CC-------cEEEeecCC--CEEEEEEeccCchhhc--ccccccCchhH----HHHh---
Confidence 2345688888776 88 455555666 6676532111000000 00000000000 0000
Q ss_pred ecCCCCceeeecCCCCceEEe-ecCCCCeEEEEEeCCe--EEEEECCCeEEEEeCCC
Q 009715 441 GTLQPAPSMRDVPKLSPLVAH-RVHTEPLSGLIFTQES--VLTVCREGHIKIWMRPG 494 (528)
Q Consensus 441 g~~~~~~~~~d~~~~~~~~~~-~~h~~~V~~l~~s~d~--l~t~s~Dg~i~iW~~~~ 494 (528)
+++ +..+ ..+.++|..++..... +.+=+..|+|.+|++..
T Consensus 231 -----------vPs---~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 231 -----------VPS---LLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred -----------hhh---hhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 011 1111 2578899999998864 78889999999999876
No 471
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=74.28 E-value=31 Score=35.33 Aligned_cols=129 Identities=13% Similarity=0.129 Sum_probs=71.7
Q ss_pred EEEEEeCCCeEEEEEccCCeEEEEeecCCCCCCCeecCCCCCc-cCCceeeeecCCCCceeeecCCC-CceEEeecCCCC
Q 009715 390 RFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSA-HWDNVCPVGTLQPAPSMRDVPKL-SPLVAHRVHTEP 467 (528)
Q Consensus 390 ~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~-~~d~~~~~g~~~~~~~~~d~~~~-~~~~~~~~h~~~ 467 (528)
++..++....+.--|+..|+.+........+ .+.|.+.-... .-+....+|-.+..+...|-+.. ..+... .....
T Consensus 482 i~~dg~~~~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~-esKdY 559 (776)
T COG5167 482 IYLDGGERDKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVV-ESKDY 559 (776)
T ss_pred EEecCCCcccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEEeecccceEEecccccCCceeee-eehhc
Confidence 4555666677777888999988887765444 45555443211 11111233333333433333321 122111 12223
Q ss_pred eEEEEEe-----CC-eEEEEECCCeEEEEeCCCCc--cccCCCccce--EEEccCCceEEEee
Q 009715 468 LSGLIFT-----QE-SVLTVCREGHIKIWMRPGVA--ESQSSSSETV--LSTSSKDKPLLSSK 520 (528)
Q Consensus 468 V~~l~~s-----~d-~l~t~s~Dg~i~iW~~~~~~--~~~~~~~~~v--l~~spd~~~l~s~~ 520 (528)
++.-.|+ .. +|+.+|.-|.||++|+-+.. ....+..+.| +.++.+|++|+...
T Consensus 560 ~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTC 622 (776)
T COG5167 560 KTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATC 622 (776)
T ss_pred cccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEee
Confidence 3333333 33 49999999999999975533 3334555556 88899999886543
No 472
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=73.65 E-value=1.8e+02 Score=33.55 Aligned_cols=140 Identities=14% Similarity=0.204 Sum_probs=78.7
Q ss_pred CCeEEEEec---------CCcEEEEEccccccccccceee---eeeeccCCcccCCceeEEEEeeCCCcEEEEEeCCceE
Q 009715 168 GHDLLIGLN---------SGDVYSVSLRQQLQDVGKKLVG---AHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNL 235 (528)
Q Consensus 168 ~~~l~~g~~---------~G~v~iwd~~~~~~~~~~~~~~---~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v 235 (528)
..+|++|+. .|.++++|+-.-...+++.... ...+.++ .+++|..++=. +| .|+++.. ..|
T Consensus 1046 k~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~t~~KlKel~~eE---~KGtVsavceV-~G--~l~~~~G-qKI 1118 (1366)
T KOG1896|consen 1046 KPYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPFTKNKLKELYIEE---QKGTVSAVCEV-RG--HLLSSQG-QKI 1118 (1366)
T ss_pred cceEEEEEeecccccccCcccEEEEEEEEecCCCCCCcccceeeeeehhh---cccceEEEEEe-cc--EEEEccC-cEE
Confidence 467888773 4899999986533233322211 1222222 45677766543 44 4666553 478
Q ss_pred EEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEEC----------CCCCEEEEEeCCCcEEE
Q 009715 236 YVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFS----------TDGTYLATVGRDGYLRV 305 (528)
Q Consensus 236 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s----------pdg~~l~s~~~dg~i~v 305 (528)
.||+++.+ +.+..++|- .=.++|+.|.--..|.+
T Consensus 1119 ~v~~l~r~------------------------------------~~ligVaFiD~~~yv~s~~~vknlIl~gDV~ksisf 1162 (1366)
T KOG1896|consen 1119 IVRKLDRD------------------------------------SELIGVAFIDLPLYVHSMKVVKNLILAGDVMKSISF 1162 (1366)
T ss_pred EEEEeccC------------------------------------CcceeeEEeccceeEEehhhhhhheehhhhhhceEE
Confidence 89999653 233344442 12445666655555666
Q ss_pred EecCCceEEeeecc---cCCCeEEEEEcCCCC--EEEEEeCCCcEEEEEC
Q 009715 306 FDYSKEQLICGGKS---YYGALLCCAWSMDGK--YILTGGEDDLVQVWSM 350 (528)
Q Consensus 306 wd~~~~~~~~~~~~---~~~~v~~l~~sp~g~--~l~sg~~dg~v~vwd~ 350 (528)
.-++..-....+-+ ..-.+.++.|--||. +++++..|++|++|-.
T Consensus 1163 l~fqeep~rlsL~srd~~~l~v~s~EFLVdg~~L~flvsDa~rNi~vy~Y 1212 (1366)
T KOG1896|consen 1163 LGFQEEPYRLSLLSRDFEPLNVYSTEFLVDGSNLSFLVSDADRNIHVYMY 1212 (1366)
T ss_pred EEEccCceEEEEeecCCchhhceeeeeEEcCCeeEEEEEcCCCcEEEEEe
Confidence 55543322222211 123466777776665 6788889999998854
No 473
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=73.44 E-value=17 Score=22.71 Aligned_cols=30 Identities=7% Similarity=0.160 Sum_probs=23.7
Q ss_pred EEEEEEeCCCeEEEEEccCCeEEEEeecCC
Q 009715 389 YRFGSVGQDTRLLLWDLEMDEIVVPLRRGP 418 (528)
Q Consensus 389 ~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~ 418 (528)
+++++...+++|.++|..+++.+..+..+.
T Consensus 5 ~lyv~~~~~~~v~~id~~~~~~~~~i~vg~ 34 (42)
T TIGR02276 5 KLYVTNSGSNTVSVIDTATNKVIATIPVGG 34 (42)
T ss_pred EEEEEeCCCCEEEEEECCCCeEEEEEECCC
Confidence 466666678999999999998888776643
No 474
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=72.45 E-value=11 Score=23.44 Aligned_cols=30 Identities=20% Similarity=0.512 Sum_probs=21.7
Q ss_pred cCCceeEEEEeeCCCcEEEEEeCC--ceEEEE
Q 009715 209 NNSRCTSVTWVPGGDGAFVVGHAD--GNLYVY 238 (528)
Q Consensus 209 h~~~v~~l~~~p~g~~~l~tg~~d--g~v~vw 238 (528)
....-....|+|||+.++.++..+ |...||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 344567889999999777777777 777776
No 475
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=71.77 E-value=1.7e+02 Score=32.63 Aligned_cols=130 Identities=12% Similarity=0.127 Sum_probs=78.5
Q ss_pred cCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCC-CCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEE
Q 009715 209 NNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGA-GDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAF 287 (528)
Q Consensus 209 h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 287 (528)
...+..+++|+|.....||+-...|+-.||++..... ....+.......... ....+. ...-..|.|
T Consensus 144 gg~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi-----~~d~~e-------~s~w~rI~W 211 (765)
T PF10214_consen 144 GGFPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSI-----IFDPEE-------LSNWKRILW 211 (765)
T ss_pred CCCccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccc-----cCCCcc-------cCcceeeEe
Confidence 4457789999998877899999999999999922111 111111100000000 000011 134557899
Q ss_pred CCCCCEEEEEeCCCcEEEEecCCceEEe--eecccCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCC
Q 009715 288 STDGTYLATVGRDGYLRVFDYSKEQLIC--GGKSYYGALLCCAWSMDG-KYILTGGEDDLVQVWSMED 352 (528)
Q Consensus 288 spdg~~l~s~~~dg~i~vwd~~~~~~~~--~~~~~~~~v~~l~~sp~g-~~l~sg~~dg~v~vwd~~~ 352 (528)
.++-+.|++++. ..+.++|+++..... ........|..+.-+|+. .+++.- ....|...++..
T Consensus 212 ~~~~~~lLv~~r-~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiL-Ts~eiiw~~~~~ 277 (765)
T PF10214_consen 212 VSDSNRLLVCNR-SKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFIL-TSKEIIWLDVKS 277 (765)
T ss_pred cCCCCEEEEEcC-CceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEE-ecCeEEEEEccC
Confidence 988888888876 568999998775522 112234678889888862 232222 235677788876
No 476
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=71.67 E-value=80 Score=28.71 Aligned_cols=125 Identities=15% Similarity=0.163 Sum_probs=63.7
Q ss_pred CeEEEEecCCcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeCC------ceEEEEE---
Q 009715 169 HDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHAD------GNLYVYE--- 239 (528)
Q Consensus 169 ~~l~~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~d------g~v~vwd--- 239 (528)
..|+++.....|.+|++.+.. ..+. ..|. --+.|..+.++..|+ +|+|--.+ ..+|+|-
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~----~~~~--~~F~-----Tv~~V~~l~y~~~GD-YlvTlE~k~~~~~~~fvR~Y~NWr 96 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEE----CPLL--CTFS-----TVGRVLQLVYSEAGD-YLVTLEEKNKRSPVDFVRAYFNWR 96 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCC----Ccee--EEEc-----chhheeEEEeccccc-eEEEEEeecCCccceEEEEEEEhh
Confidence 566666777889999987411 1111 1222 346899999999999 88885332 2566653
Q ss_pred cCCCCCCCCccccccccceeEEeccCC-CCCCCeEEEeec-CCCeEEEEECC-CCCEEEEEeCCCcEEEEecCCc
Q 009715 240 KSKDGAGDSSFPVIKDQTQFSVAHPRY-SKSNPIARWHIC-QGSINSIAFST-DGTYLATVGRDGYLRVFDYSKE 311 (528)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~h-~~~v~~l~~sp-dg~~l~s~~~dg~i~vwd~~~~ 311 (528)
................ ....... .....+.....- ..++.+++-.| .|++| .|+ +..+.+|.+...
T Consensus 97 ~~~~~~~~v~vRiaG~----~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~Ll-Vg~-~~~l~lf~l~~~ 165 (215)
T PF14761_consen 97 SQKEENSPVRVRIAGH----RVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLL-VGC-GNKLVLFTLKYQ 165 (215)
T ss_pred hhcccCCcEEEEEccc----ccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEE-EEc-CCEEEEEEEEEE
Confidence 2211111000000000 0000000 011112222221 45788899888 66644 444 357899988643
No 477
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=70.59 E-value=63 Score=30.93 Aligned_cols=72 Identities=15% Similarity=0.253 Sum_probs=50.0
Q ss_pred CcEEEEecCCceEEeeecccCCCeEEEEEcCCCCEEEEEe------CCCcEEEEECCCCeEEEEeec-----CCCCeEEE
Q 009715 301 GYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGG------EDDLVQVWSMEDRKVVAWGEG-----HNSWVSGV 369 (528)
Q Consensus 301 g~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~sg~------~dg~v~vwd~~~~~~~~~~~~-----h~~~V~~v 369 (528)
..|++||..+.+-..-..+-.+.|..+.|..+.++++.|. ....+..||..+..-. .+.+ -.++|..+
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~-~~~~~~s~~ipgpv~a~ 94 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWS-SLGGGSSNSIPGPVTAL 94 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeee-ecCCcccccCCCcEEEE
Confidence 4689999987766554455668899999997777777764 3557888998876432 2222 24678888
Q ss_pred EEec
Q 009715 370 AFDS 373 (528)
Q Consensus 370 ~f~p 373 (528)
.+..
T Consensus 95 ~~~~ 98 (281)
T PF12768_consen 95 TFIS 98 (281)
T ss_pred Eeec
Confidence 8854
No 478
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=68.82 E-value=1.3e+02 Score=30.11 Aligned_cols=121 Identities=19% Similarity=0.259 Sum_probs=73.1
Q ss_pred ceeEEEEe--e-CCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEEC
Q 009715 212 RCTSVTWV--P-GGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFS 288 (528)
Q Consensus 212 ~v~~l~~~--p-~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 288 (528)
.+..+++- + +|..++++...+|.+..|.+...+..... ...++.+..- ..+-.|...
T Consensus 157 e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~-------------------~~lVR~f~~~-sQ~EGCVVD 216 (381)
T PF02333_consen 157 EPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVS-------------------ATLVREFKVG-SQPEGCVVD 216 (381)
T ss_dssp SEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEE-------------------EEEEEEEE-S-S-EEEEEEE
T ss_pred cceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEe-------------------eEEEEEecCC-CcceEEEEe
Confidence 46666653 3 45557777889999999998643321111 1234555442 468888888
Q ss_pred CCCCEEEEEeCCCcEEEEecCC-----ceEEeeecc--cCCCeEEEEEcC--CCC-EEEEE-eCCCcEEEEECCC
Q 009715 289 TDGTYLATVGRDGYLRVFDYSK-----EQLICGGKS--YYGALLCCAWSM--DGK-YILTG-GEDDLVQVWSMED 352 (528)
Q Consensus 289 pdg~~l~s~~~dg~i~vwd~~~-----~~~~~~~~~--~~~~v~~l~~sp--~g~-~l~sg-~~dg~v~vwd~~~ 352 (528)
....+|+.+-.+.-|+-|+.+. ++.+....+ ....|..|++-. +++ ||++. =.++...||+.+.
T Consensus 217 De~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~ 291 (381)
T PF02333_consen 217 DETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREG 291 (381)
T ss_dssp TTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESST
T ss_pred cccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCC
Confidence 8778999999998888888762 233322222 345677777743 443 55544 4577899999875
No 479
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=68.53 E-value=65 Score=33.27 Aligned_cols=77 Identities=16% Similarity=0.289 Sum_probs=51.2
Q ss_pred CCeEEEEECCCCCEEEEEeCCCcEEEEe---------cCCceEE--eee---------cccCCCeEEEEEcCCC---CEE
Q 009715 280 GSINSIAFSTDGTYLATVGRDGYLRVFD---------YSKEQLI--CGG---------KSYYGALLCCAWSMDG---KYI 336 (528)
Q Consensus 280 ~~v~~l~~spdg~~l~s~~~dg~i~vwd---------~~~~~~~--~~~---------~~~~~~v~~l~~sp~g---~~l 336 (528)
-.|..+..++.|..++..+.+|.+.++= ++.++.. +.. ..-.-.+...+|+|+. ..|
T Consensus 104 feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL 183 (741)
T KOG4460|consen 104 FEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHL 183 (741)
T ss_pred EEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceE
Confidence 4678889999999999999998654432 1233221 110 0111246678999976 467
Q ss_pred EEEeCCCcEEEEECCCCeEE
Q 009715 337 LTGGEDDLVQVWSMEDRKVV 356 (528)
Q Consensus 337 ~sg~~dg~v~vwd~~~~~~~ 356 (528)
..-..|..|++||+.....+
T Consensus 184 ~iL~sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 184 VLLTSDNVIRIYSLSEPTEL 203 (741)
T ss_pred EEEecCcEEEEEecCCcchh
Confidence 77778999999998764433
No 480
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=68.10 E-value=1.5e+02 Score=30.55 Aligned_cols=33 Identities=9% Similarity=0.013 Sum_probs=24.8
Q ss_pred CCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCC
Q 009715 363 NSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMD 408 (528)
Q Consensus 363 ~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~ 408 (528)
-...+.|+|.| || .+|++--..|+|++++-..+
T Consensus 29 L~~Pw~maflP-------DG------~llVtER~~G~I~~v~~~~~ 61 (454)
T TIGR03606 29 LNKPWALLWGP-------DN------QLWVTERATGKILRVNPETG 61 (454)
T ss_pred CCCceEEEEcC-------CC------eEEEEEecCCEEEEEeCCCC
Confidence 44577899999 99 66666655799999876544
No 481
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=67.96 E-value=1.5e+02 Score=30.30 Aligned_cols=158 Identities=12% Similarity=0.053 Sum_probs=89.4
Q ss_pred CCCCeEEEEecCCcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEee---C-CCcEEEEEeCCceEEEEEcC
Q 009715 166 KDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVP---G-GDGAFVVGHADGNLYVYEKS 241 (528)
Q Consensus 166 ~~~~~l~~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p---~-g~~~l~tg~~dg~v~vwd~~ 241 (528)
.+...+++|+.+|.++||+.......+...+.... -+.+|..++.-. . ..+.||+ =.-..+.||.+.
T Consensus 35 ~~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~--------l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~ 105 (418)
T PF14727_consen 35 SGSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQ--------LKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVS 105 (418)
T ss_pred CCccEEEEeccccEEEEEccCCCCCCCccEEEEEe--------cCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEE
Confidence 45678899999999999998543222222222111 345777777643 2 2224444 344678888874
Q ss_pred CCCCCCCccccccccceeEEeccCCCCCCCeEEEeec--CCCeEEEEECC----C-CCEEEEEeCCCcEEEEecCCceEE
Q 009715 242 KDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHIC--QGSINSIAFST----D-GTYLATVGRDGYLRVFDYSKEQLI 314 (528)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~l~~sp----d-g~~l~s~~~dg~i~vwd~~~~~~~ 314 (528)
...... ..... ..+.....| +.....+++-| . ..+|.+=+.||.+.+|+-+..-..
T Consensus 106 ~~~g~~------~~g~~-----------~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~ 168 (418)
T PF14727_consen 106 LVDGTV------EHGNQ-----------YQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFS 168 (418)
T ss_pred ecCCCc------ccCcE-----------EEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEE
Confidence 321110 00000 011111112 12333344333 2 357888899999999998755444
Q ss_pred eeecccCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 009715 315 CGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSM 350 (528)
Q Consensus 315 ~~~~~~~~~v~~l~~sp~g~~l~sg~~dg~v~vwd~ 350 (528)
+.+.. .--.-.+.+.+.-..|++++.+..+.-|..
T Consensus 169 ~~lp~-~llPgPl~Y~~~tDsfvt~sss~~l~~Yky 203 (418)
T PF14727_consen 169 RFLPD-FLLPGPLCYCPRTDSFVTASSSWTLECYKY 203 (418)
T ss_pred EEcCC-CCCCcCeEEeecCCEEEEecCceeEEEecH
Confidence 44333 222234688888888999998888888865
No 482
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=67.68 E-value=72 Score=26.61 Aligned_cols=122 Identities=11% Similarity=0.123 Sum_probs=73.1
Q ss_pred eEEEEeeCCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECC----
Q 009715 214 TSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST---- 289 (528)
Q Consensus 214 ~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp---- 289 (528)
..-+|....+ -|+++..-|.|.|++.......... ..+.++.++. ...|++|+-.+
T Consensus 2 aiGkfDG~~p-cL~~aT~~gKV~IH~ph~~~~~~~~------------------~~~~i~~LNi-n~~italaaG~l~~~ 61 (136)
T PF14781_consen 2 AIGKFDGVHP-CLACATTGGKVFIHNPHERGQRTGR------------------QDSDISFLNI-NQEITALAAGRLKPD 61 (136)
T ss_pred eEEEeCCCce-eEEEEecCCEEEEECCCcccccccc------------------ccCceeEEEC-CCceEEEEEEecCCC
Confidence 3456666667 6888888899999987642211100 1234444443 24566665433
Q ss_pred -CCCEEEEEeCCCcEEEEecCCceEEeeecccCCCeEEEEEcC----CCCEEEEEeCCCcEEEEECCCCeEEEE
Q 009715 290 -DGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSM----DGKYILTGGEDDLVQVWSMEDRKVVAW 358 (528)
Q Consensus 290 -dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp----~g~~l~sg~~dg~v~vwd~~~~~~~~~ 358 (528)
+...|+.|+. ..|..||+....-+.. +.-.+.|+++.+-. +..++++ +.+..|.-||.+-.+...+
T Consensus 62 ~~~D~LliGt~-t~llaYDV~~N~d~Fy-ke~~DGvn~i~~g~~~~~~~~l~iv-GGncsi~Gfd~~G~e~fWt 132 (136)
T PF14781_consen 62 DGRDCLLIGTQ-TSLLAYDVENNSDLFY-KEVPDGVNAIVIGKLGDIPSPLVIV-GGNCSIQGFDYEGNEIFWT 132 (136)
T ss_pred CCcCEEEEecc-ceEEEEEcccCchhhh-hhCccceeEEEEEecCCCCCcEEEE-CceEEEEEeCCCCcEEEEE
Confidence 2446777665 5799999987765543 33457788887743 2334444 4567788888765554444
No 483
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=66.78 E-value=76 Score=30.70 Aligned_cols=81 Identities=20% Similarity=0.153 Sum_probs=54.9
Q ss_pred CCCEEEEEeCCCcEEEEecCCceEEeeecccCCCeEEEEEcCCCCEEEEEeC----C----------------CcEEEEE
Q 009715 290 DGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGE----D----------------DLVQVWS 349 (528)
Q Consensus 290 dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~sg~~----d----------------g~v~vwd 349 (528)
+|++.++-+..|.+..+|.++|+...... -.+....++|. |.++++|.. + .-|.|.|
T Consensus 212 dgrLwvldsgtGev~~vD~~~G~~e~Va~-vpG~~rGL~f~--G~llvVgmSk~R~~~~f~glpl~~~l~~~~CGv~vid 288 (335)
T TIGR03032 212 QGKLWLLNSGRGELGYVDPQAGKFQPVAF-LPGFTRGLAFA--GDFAFVGLSKLRESRVFGGLPIEERLDALGCGVAVID 288 (335)
T ss_pred CCeEEEEECCCCEEEEEcCCCCcEEEEEE-CCCCCccccee--CCEEEEEeccccCCCCcCCCchhhhhhhhcccEEEEE
Confidence 56677777778888888887775433322 24556778887 887777642 1 2377888
Q ss_pred CCCCeEEEEee--cCCCCeEEEEEec
Q 009715 350 MEDRKVVAWGE--GHNSWVSGVAFDS 373 (528)
Q Consensus 350 ~~~~~~~~~~~--~h~~~V~~v~f~p 373 (528)
+++|..+..++ +--..+.+|+.-|
T Consensus 289 l~tG~vv~~l~feg~v~EifdV~vLP 314 (335)
T TIGR03032 289 LNSGDVVHWLRFEGVIEEIYDVAVLP 314 (335)
T ss_pred CCCCCEEEEEEeCCceeEEEEEEEec
Confidence 99988887765 3344567777777
No 484
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=66.46 E-value=1.6e+02 Score=30.32 Aligned_cols=55 Identities=13% Similarity=0.037 Sum_probs=37.7
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEEEecCCce--EEeeec-----ccCCCeEEEEEcCCC
Q 009715 279 QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQ--LICGGK-----SYYGALLCCAWSMDG 333 (528)
Q Consensus 279 ~~~v~~l~~spdg~~l~s~~~dg~i~vwd~~~~~--~~~~~~-----~~~~~v~~l~~sp~g 333 (528)
-.....|+|.|||++|++--..|.|++++..++. .+..+. .-.+....|+++|+-
T Consensus 29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 29 LNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 3567799999999877665446999999865543 222111 124678999999874
No 485
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=66.34 E-value=1.3e+02 Score=29.05 Aligned_cols=78 Identities=15% Similarity=0.138 Sum_probs=52.8
Q ss_pred EEEeCCCcEEEEecCCceEEeeecc--cCCCeEEEEEcC------CCCEEEEEeCCCcEEEEECCCCeEEEEeecCCC--
Q 009715 295 ATVGRDGYLRVFDYSKEQLICGGKS--YYGALLCCAWSM------DGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNS-- 364 (528)
Q Consensus 295 ~s~~~dg~i~vwd~~~~~~~~~~~~--~~~~v~~l~~sp------~g~~l~sg~~dg~v~vwd~~~~~~~~~~~~h~~-- 364 (528)
+.+-.-|.|-+||+. +++++.+.. .-..-..|+..| .+.+|+---.||.|..||..+++.+-.+....+
T Consensus 216 v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~p 294 (336)
T TIGR03118 216 VAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHP 294 (336)
T ss_pred ccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCe
Confidence 344455899999987 777776632 223345566655 455666556699999999999988777764332
Q ss_pred ----CeEEEEEec
Q 009715 365 ----WVSGVAFDS 373 (528)
Q Consensus 365 ----~V~~v~f~p 373 (528)
..+.|+|-.
T Consensus 295 i~i~GLWgL~fGn 307 (336)
T TIGR03118 295 VKVDGLWSLTFGN 307 (336)
T ss_pred EEecCeEEeeeCC
Confidence 356777754
No 486
>PLN02153 epithiospecifier protein
Probab=65.81 E-value=1.4e+02 Score=29.34 Aligned_cols=62 Identities=15% Similarity=0.141 Sum_probs=32.0
Q ss_pred CCCEEEEEeCC-----------CcEEEEecCCceEEeeeccc------CCCeEEEEEcCCCCEEEEEeCC----------
Q 009715 290 DGTYLATVGRD-----------GYLRVFDYSKEQLICGGKSY------YGALLCCAWSMDGKYILTGGED---------- 342 (528)
Q Consensus 290 dg~~l~s~~~d-----------g~i~vwd~~~~~~~~~~~~~------~~~v~~l~~sp~g~~l~sg~~d---------- 342 (528)
++++++.|+.+ ..+.+||+++.+-.. +... .... +++. -++++++.|+.+
T Consensus 137 ~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~-l~~~~~~~~~r~~~-~~~~-~~~~iyv~GG~~~~~~~gG~~~ 213 (341)
T PLN02153 137 ENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQ-LPDPGENFEKRGGA-GFAV-VQGKIWVVYGFATSILPGGKSD 213 (341)
T ss_pred CCEEEEECCccCCCccCCCcccceEEEEECCCCeEee-CCCCCCCCCCCCcc-eEEE-ECCeEEEEeccccccccCCccc
Confidence 45566666643 247788887654322 1111 1111 2222 256666655432
Q ss_pred ---CcEEEEECCCCe
Q 009715 343 ---DLVQVWSMEDRK 354 (528)
Q Consensus 343 ---g~v~vwd~~~~~ 354 (528)
..|.+||..+.+
T Consensus 214 ~~~~~v~~yd~~~~~ 228 (341)
T PLN02153 214 YESNAVQFFDPASGK 228 (341)
T ss_pred eecCceEEEEcCCCc
Confidence 358888887654
No 487
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.81 E-value=1.1e+02 Score=35.29 Aligned_cols=22 Identities=23% Similarity=0.454 Sum_probs=20.3
Q ss_pred EEEEEEeCCCeEEEEEccCCeE
Q 009715 389 YRFGSVGQDTRLLLWDLEMDEI 410 (528)
Q Consensus 389 ~~l~s~s~D~~i~lwd~~~~~~ 410 (528)
..++++..|+.+.+||...++.
T Consensus 247 ~~~v~~h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 247 SHFVSYHTDGSYAFWDVSSGKL 268 (993)
T ss_pred ceEEEEEecCCEEeeecCCCce
Confidence 7899999999999999999866
No 488
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=63.21 E-value=1.2e+02 Score=29.92 Aligned_cols=11 Identities=18% Similarity=0.132 Sum_probs=6.9
Q ss_pred CcEEEEEcccc
Q 009715 178 GDVYSVSLRQQ 188 (528)
Q Consensus 178 G~v~iwd~~~~ 188 (528)
..|.+||..+.
T Consensus 168 ~~v~~YDp~t~ 178 (346)
T TIGR03547 168 KNVLSYDPSTN 178 (346)
T ss_pred ceEEEEECCCC
Confidence 35677777653
No 489
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=62.82 E-value=1e+02 Score=35.61 Aligned_cols=34 Identities=15% Similarity=0.300 Sum_probs=29.2
Q ss_pred ecCCCeEEEEECCCCCEEEEEeCCCcEEEEecCC
Q 009715 277 ICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSK 310 (528)
Q Consensus 277 ~h~~~v~~l~~spdg~~l~s~~~dg~i~vwd~~~ 310 (528)
.+..+|..|.....-..+.+=+..+.|.+||+..
T Consensus 240 ~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 240 SSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred CCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 4567899999988777888889999999999975
No 490
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=62.36 E-value=69 Score=24.58 Aligned_cols=41 Identities=20% Similarity=0.079 Sum_probs=28.2
Q ss_pred eCCCcEEEEecCCceEEeeecccCCCeEEEEEcCCCCEEEEE
Q 009715 298 GRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTG 339 (528)
Q Consensus 298 ~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~sg 339 (528)
..+|.+..||..+++....+.+. ..-+.|++++|+.+++.+
T Consensus 34 ~~~GRll~ydp~t~~~~vl~~~L-~fpNGVals~d~~~vlv~ 74 (89)
T PF03088_consen 34 RPTGRLLRYDPSTKETTVLLDGL-YFPNGVALSPDESFVLVA 74 (89)
T ss_dssp ---EEEEEEETTTTEEEEEEEEE-SSEEEEEE-TTSSEEEEE
T ss_pred CCCcCEEEEECCCCeEEEehhCC-CccCeEEEcCCCCEEEEE
Confidence 34578999999988765544442 356789999999987766
No 491
>PLN02193 nitrile-specifier protein
Probab=61.77 E-value=2.1e+02 Score=29.83 Aligned_cols=64 Identities=14% Similarity=0.160 Sum_probs=34.5
Q ss_pred CCCEEEEEeCC----CcEEEEecCCceEEeeecc----cCCCeEEEEEcCCCCEEEEEeCC--------------CcEEE
Q 009715 290 DGTYLATVGRD----GYLRVFDYSKEQLICGGKS----YYGALLCCAWSMDGKYILTGGED--------------DLVQV 347 (528)
Q Consensus 290 dg~~l~s~~~d----g~i~vwd~~~~~~~~~~~~----~~~~v~~l~~sp~g~~l~sg~~d--------------g~v~v 347 (528)
+++.++.++.+ ..+.+||+.+.+-...-.. ......+++ .-++++++.|+.+ ..+.+
T Consensus 328 ~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~ 406 (470)
T PLN02193 328 QGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASA-AVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFA 406 (470)
T ss_pred CCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEE-EECCEEEEECCccCCccccccCccceeccEEE
Confidence 46666666654 4588999987654322110 011111222 2256777777753 24677
Q ss_pred EECCCCe
Q 009715 348 WSMEDRK 354 (528)
Q Consensus 348 wd~~~~~ 354 (528)
||+.+.+
T Consensus 407 ~D~~t~~ 413 (470)
T PLN02193 407 LDTETLQ 413 (470)
T ss_pred EEcCcCE
Confidence 7777653
No 492
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=61.75 E-value=1.6e+02 Score=28.53 Aligned_cols=71 Identities=18% Similarity=0.316 Sum_probs=52.8
Q ss_pred CeEEEEECCCCCEEEEEeCCCcEEEEecCCceEEeeecccCC-C----eEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 009715 281 SINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYG-A----LLCCAWSMDGKYILTGGEDDLVQVWSME 351 (528)
Q Consensus 281 ~v~~l~~spdg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~-~----v~~l~~sp~g~~l~sg~~dg~v~vwd~~ 351 (528)
-|++|....+|.+|++.-.-..|.+.|.++|+.+..+.+... . -...+|-.|-+++-.+..++.|.|||-.
T Consensus 145 HiNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN~ 220 (299)
T PF14269_consen 145 HINSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDNA 220 (299)
T ss_pred EeeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcCC
Confidence 477888889999999998888999999999999888765411 1 1124555566666566778888888863
No 493
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=61.68 E-value=20 Score=21.10 Aligned_cols=25 Identities=16% Similarity=0.154 Sum_probs=20.7
Q ss_pred EEEEEeCCCcEEEEecCCceEEeee
Q 009715 293 YLATVGRDGYLRVFDYSKEQLICGG 317 (528)
Q Consensus 293 ~l~s~~~dg~i~vwd~~~~~~~~~~ 317 (528)
.++.++.++.+..+|.++|+.+..+
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcEEEEc
Confidence 6777888999999999999877653
No 494
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=61.23 E-value=1.8e+02 Score=29.11 Aligned_cols=125 Identities=22% Similarity=0.256 Sum_probs=77.7
Q ss_pred CCeEEEEE--CC-CCC-EEEEEeCCCcEEEEecC---Cc----eEEeeecccCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 009715 280 GSINSIAF--ST-DGT-YLATVGRDGYLRVFDYS---KE----QLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVW 348 (528)
Q Consensus 280 ~~v~~l~~--sp-dg~-~l~s~~~dg~i~vwd~~---~~----~~~~~~~~~~~~v~~l~~sp~g~~l~sg~~dg~v~vw 348 (528)
..++.+++ ++ +|. +++....+|.+..|-+. .+ ++++.+.. ...+..|.......+|..+-++--|.-|
T Consensus 156 ~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-~sQ~EGCVVDDe~g~LYvgEE~~GIW~y 234 (381)
T PF02333_consen 156 SEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV-GSQPEGCVVDDETGRLYVGEEDVGIWRY 234 (381)
T ss_dssp SSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-EEEEEEETTTTEEEEEETTTEEEEE
T ss_pred ccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC-CCcceEEEEecccCCEEEecCccEEEEE
Confidence 35667776 34 455 55566788988777764 23 45666653 4578888888888899999999888888
Q ss_pred ECCC-----CeEEEEeec--CCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEccCC-eEEEEe
Q 009715 349 SMED-----RKVVAWGEG--HNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMD-EIVVPL 414 (528)
Q Consensus 349 d~~~-----~~~~~~~~~--h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~~~-~~~~~~ 414 (528)
+.+. ++.+....+ ....|..|+.-.. . +| .-++|+|.-.+++..+||.... ..+..+
T Consensus 235 ~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~---~--~g----~gYLivSsQG~~sf~Vy~r~~~~~~~g~f 299 (381)
T PF02333_consen 235 DAEPEGGNDRTLVASADGDGLVADVEGLALYYG---S--DG----KGYLIVSSQGDNSFAVYDREGPNAYVGSF 299 (381)
T ss_dssp ESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE----C--CC-----EEEEEEEGGGTEEEEEESSTT--EEEEE
T ss_pred ecCCCCCCcceeeecccccccccCccceEEEec---C--CC----CeEEEEEcCCCCeEEEEecCCCCcccceE
Confidence 7752 233333332 4567888887541 0 22 1178888888999999998753 334444
No 495
>PLN02193 nitrile-specifier protein
Probab=60.67 E-value=2.1e+02 Score=29.69 Aligned_cols=64 Identities=16% Similarity=0.145 Sum_probs=34.9
Q ss_pred CCCEEEEEeCCC-----cEEEEecCCceEEeeec-----ccCCCeEEEEEcCCCCEEEEEeCC----CcEEEEECCCCeE
Q 009715 290 DGTYLATVGRDG-----YLRVFDYSKEQLICGGK-----SYYGALLCCAWSMDGKYILTGGED----DLVQVWSMEDRKV 355 (528)
Q Consensus 290 dg~~l~s~~~dg-----~i~vwd~~~~~~~~~~~-----~~~~~v~~l~~sp~g~~l~sg~~d----g~v~vwd~~~~~~ 355 (528)
++++++.|+.++ .+..||+.+.+-...-. ...... .++ .-++++++.++.+ ..+.+||+.+.+-
T Consensus 278 ~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~-~~~-~~~gkiyviGG~~g~~~~dv~~yD~~t~~W 355 (470)
T PLN02193 278 EENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGA-GLE-VVQGKVWVVYGFNGCEVDDVHYYDPVQDKW 355 (470)
T ss_pred CCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCc-EEE-EECCcEEEEECCCCCccCceEEEECCCCEE
Confidence 455666666543 46778887665322110 011111 122 2267777777655 4588999987653
No 496
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=60.37 E-value=24 Score=20.26 Aligned_cols=26 Identities=15% Similarity=0.267 Sum_probs=22.0
Q ss_pred CCeEEEEEeCCeEEEEECCCeEEEEe
Q 009715 466 EPLSGLIFTQESVLTVCREGHIKIWM 491 (528)
Q Consensus 466 ~~V~~l~~s~d~l~t~s~Dg~i~iW~ 491 (528)
+.|.+++..+..++.+..-+.||+|.
T Consensus 2 E~i~aia~g~~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 2 EEIEAIAAGDSWVAVATSAGYLRIFS 27 (27)
T ss_pred ceEEEEEccCCEEEEEeCCCeEEecC
Confidence 45788999999988888889999874
No 497
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=60.20 E-value=2e+02 Score=29.27 Aligned_cols=29 Identities=14% Similarity=0.319 Sum_probs=22.0
Q ss_pred CCeEEEEEeCC--eEEEEECCCeEEEEeCCC
Q 009715 466 EPLSGLIFTQE--SVLTVCREGHIKIWMRPG 494 (528)
Q Consensus 466 ~~V~~l~~s~d--~l~t~s~Dg~i~iW~~~~ 494 (528)
..|..++..+. .|++...+|.|.+|++..
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 34888988885 499999999999999964
No 498
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=59.34 E-value=2.1e+02 Score=29.18 Aligned_cols=149 Identities=12% Similarity=0.096 Sum_probs=80.8
Q ss_pred CCCcEEEEEeCCceEEEEEcCCCCCCCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEEC---C--CCCEEE
Q 009715 221 GGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFS---T--DGTYLA 295 (528)
Q Consensus 221 ~g~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s---p--dg~~l~ 295 (528)
++...+++|+.+|.++||+....+...... +.. ..-..+|..+..- + +...||
T Consensus 35 ~~~d~IivGS~~G~LrIy~P~~~~~~~~~l---------------------llE-~~l~~PILqv~~G~F~s~~~~~~La 92 (418)
T PF14727_consen 35 SGSDKIIVGSYSGILRIYDPSGNEFQPEDL---------------------LLE-TQLKDPILQVECGKFVSGSEDLQLA 92 (418)
T ss_pred CCccEEEEeccccEEEEEccCCCCCCCccE---------------------EEE-EecCCcEEEEEeccccCCCCcceEE
Confidence 333489999999999999985422110000 000 0012456555543 2 222343
Q ss_pred EEeCCCcEEEEecCC--ce-------EEeeecccC--CCeEEEEEcC----C-CCEEEEEeCCCcEEEEECCCCeEEEEe
Q 009715 296 TVGRDGYLRVFDYSK--EQ-------LICGGKSYY--GALLCCAWSM----D-GKYILTGGEDDLVQVWSMEDRKVVAWG 359 (528)
Q Consensus 296 s~~~dg~i~vwd~~~--~~-------~~~~~~~~~--~~v~~l~~sp----~-g~~l~sg~~dg~v~vwd~~~~~~~~~~ 359 (528)
+ -.-..+.||.+.. +. .+..+..|. .....+++-| . -.+|.+-+.||.+.+|+-+.....+.+
T Consensus 93 V-LhP~kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~l 171 (418)
T PF14727_consen 93 V-LHPRKLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFL 171 (418)
T ss_pred E-ecCCEEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEc
Confidence 3 4556777777621 11 122222232 1222233333 2 247788899999999997765444444
Q ss_pred ecCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEcc
Q 009715 360 EGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLE 406 (528)
Q Consensus 360 ~~h~~~V~~v~f~p~~~~~~~dg~~~~~~~~l~s~s~D~~i~lwd~~ 406 (528)
.. ---...+.|.+ .- ..|++++.+..|.-|...
T Consensus 172 p~-~llPgPl~Y~~-------~t------Dsfvt~sss~~l~~Yky~ 204 (418)
T PF14727_consen 172 PD-FLLPGPLCYCP-------RT------DSFVTASSSWTLECYKYQ 204 (418)
T ss_pred CC-CCCCcCeEEee-------cC------CEEEEecCceeEEEecHH
Confidence 32 22333466766 22 368888888888888653
No 499
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=57.35 E-value=1.9e+02 Score=28.10 Aligned_cols=64 Identities=13% Similarity=0.128 Sum_probs=34.1
Q ss_pred CCCEEEEEeC-----CCcEEEEecCCceEEe--eecccCCCeEEEEEcCCCCEEEEEeCCC----cEEEEECCCCe
Q 009715 290 DGTYLATVGR-----DGYLRVFDYSKEQLIC--GGKSYYGALLCCAWSMDGKYILTGGEDD----LVQVWSMEDRK 354 (528)
Q Consensus 290 dg~~l~s~~~-----dg~i~vwd~~~~~~~~--~~~~~~~~v~~l~~sp~g~~l~sg~~dg----~v~vwd~~~~~ 354 (528)
++++.+.|+. ...+..||+.+.+-.. .+.. .......+...++++.+.|+.++ .+.+||.++.+
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~-~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPG-EPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ 197 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCC-CCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCe
Confidence 4556666653 2357888887654322 1111 11111222234677778887654 35678887654
No 500
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=57.29 E-value=48 Score=36.14 Aligned_cols=152 Identities=16% Similarity=0.175 Sum_probs=91.8
Q ss_pred CCCCeEEEEecCCcEEEEEccccccccccceeeeeeeccCCcccCCceeEEEEeeCCCcEEEEEeCCceEEEEEcCCCCC
Q 009715 166 KDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGA 245 (528)
Q Consensus 166 ~~~~~l~~g~~~G~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~g~~~l~tg~~dg~v~vwd~~~~~~ 245 (528)
.+-..+.+|+++|.|.++.-.+ +..+ + ............+.++.+++. -+..|.-||++-.|--...+.
T Consensus 545 s~~PTic~gtq~ssisissss~---~s~k--e---~~~~~~spe~~~v~~l~~ss~---Slgagl~dgt~a~y~rap~gS 613 (925)
T KOG3522|consen 545 SPHPTICLGTQTSSISISSSSL---DSIK--E---VTSEPPSPEHESVKLLLFSSG---SLGAGLIDGTLAVYGRAPSGS 613 (925)
T ss_pred CCCCcccccCccceeEEeeccC---Cccc--c---eeccCCCCchhhhhhhhcccc---ccccCccCCccccccCCCCCC
Confidence 3455677899999999886542 1111 1 111111124556777887765 366777888887765433222
Q ss_pred CCCccccccccceeEEeccCCCCCCCeEEEeecCCCeEEEEECCCCCEEEEEeCCCcEEEEecCCceEEeeecc---cCC
Q 009715 246 GDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKS---YYG 322 (528)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~~~dg~i~vwd~~~~~~~~~~~~---~~~ 322 (528)
.... +-........+|...+|..| ++.++.+|.|.++...+......... |..
T Consensus 614 wd~e---------------------p~~~~~~g~lPvrsla~~ed---~~was~gG~V~vi~~tt~~~~~~leahqee~~ 669 (925)
T KOG3522|consen 614 WDGE---------------------PNISIPTGSLPVRSLAFQED---FVWASEGGCVHVIPSTTFIRSWDLEAHQEEAH 669 (925)
T ss_pred CCCC---------------------CccccccCCccccchhhhhc---eeeeecCCceEEEechhccccchhHHHHhhcc
Confidence 1111 11111222367888888766 66677889999999987665554443 456
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 009715 323 ALLCCAWSMDGKYILTGGEDDLVQVWSMEDR 353 (528)
Q Consensus 323 ~v~~l~~sp~g~~l~sg~~dg~v~vwd~~~~ 353 (528)
.|+++...-++-+++..+.| .+++++.++-
T Consensus 670 ~Vthm~~~~~gVwvafasG~-~~rlfhtetl 699 (925)
T KOG3522|consen 670 SVTHMLYLDNGVWVAFASGD-EERLFHTETL 699 (925)
T ss_pred eEEEEEeeCCceEEEEcCCC-EEEEeccccc
Confidence 78888888777777766655 4555565543
Done!