Query 009716
Match_columns 528
No_of_seqs 177 out of 319
Neff 5.4
Searched_HMMs 46136
Date Thu Mar 28 16:29:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009716.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009716hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2549 Transcription initiati 100.0 3E-115 6E-120 923.1 37.1 523 2-528 9-576 (576)
2 COG5095 TAF6 Transcription ini 100.0 1E-102 2E-107 778.6 26.5 393 3-398 5-419 (450)
3 cd08050 TAF6 TATA Binding Prot 100.0 3E-96 7E-101 763.3 33.4 333 5-338 1-343 (343)
4 PF07571 DUF1546: Protein of u 100.0 1.4E-30 3.1E-35 223.8 5.5 91 259-349 1-92 (92)
5 PF02969 TAF: TATA box binding 99.9 3.7E-25 8.1E-30 178.9 8.3 66 1-66 1-66 (66)
6 smart00803 TAF TATA box bindin 99.8 9.6E-20 2.1E-24 147.3 8.9 65 2-66 1-65 (65)
7 cd00076 H4 Histone H4, one of 99.5 1.4E-13 3E-18 116.9 9.2 73 3-76 13-85 (85)
8 PLN00035 histone H4; Provision 99.5 1.6E-13 3.5E-18 120.0 9.5 74 3-77 29-102 (103)
9 PTZ00015 histone H4; Provision 99.4 4.5E-13 9.8E-18 117.2 9.2 73 3-76 30-102 (102)
10 COG2036 HHT1 Histones H3 and H 98.9 2.1E-09 4.4E-14 92.6 6.6 70 2-71 18-87 (91)
11 smart00417 H4 Histone H4. 98.9 3.5E-09 7.6E-14 87.9 6.7 62 3-64 13-74 (74)
12 cd07979 TAF9 TATA Binding Prot 98.7 9.4E-08 2E-12 86.1 9.1 71 6-79 4-74 (117)
13 smart00576 BTP Bromodomain tra 98.4 1.7E-06 3.7E-11 72.2 8.5 65 6-70 9-73 (77)
14 PF00125 Histone: Core histone 98.2 2.4E-06 5.3E-11 70.1 6.2 64 4-67 6-74 (75)
15 PF00808 CBFD_NFYB_HMF: Histon 98.1 9.9E-06 2.2E-10 65.1 7.8 63 3-65 2-65 (65)
16 cd07981 TAF12 TATA Binding Pro 98.1 2.1E-05 4.6E-10 65.0 8.9 64 4-67 2-66 (72)
17 KOG3467 Histone H4 [Chromatin 97.9 4.3E-05 9.4E-10 64.9 7.8 73 4-77 30-102 (103)
18 PF07524 Bromo_TP: Bromodomain 97.8 0.00016 3.5E-09 60.1 8.8 65 6-70 9-73 (77)
19 cd00074 H2A Histone 2A; H2A is 97.6 0.00016 3.4E-09 65.2 7.3 65 3-67 20-85 (115)
20 smart00428 H3 Histone H3. 97.6 0.00023 5E-09 63.2 7.7 63 8-70 38-103 (105)
21 PF02291 TFIID-31kDa: Transcri 97.2 0.0012 2.5E-08 60.8 7.7 62 7-68 16-77 (129)
22 PF15630 CENP-S: Kinetochore c 97.1 0.002 4.4E-08 54.0 7.7 59 8-66 10-71 (76)
23 PF12755 Vac14_Fab1_bd: Vacuol 96.8 0.0042 9.1E-08 54.3 7.0 79 230-321 7-85 (97)
24 KOG3334 Transcription initiati 96.4 0.012 2.7E-07 54.6 7.6 63 8-70 18-80 (148)
25 PLN00161 histone H3; Provision 96.3 0.016 3.5E-07 53.5 7.8 66 8-73 64-131 (135)
26 PLN00160 histone H3; Provision 96.3 0.014 3E-07 51.2 6.9 63 8-70 30-94 (97)
27 PLN00121 histone H3; Provision 96.2 0.013 2.9E-07 54.3 6.9 62 8-70 71-134 (136)
28 PTZ00018 histone H3; Provision 96.2 0.013 2.8E-07 54.4 6.8 63 8-71 71-135 (136)
29 KOG0869 CCAAT-binding factor, 96.0 0.026 5.6E-07 53.2 7.9 69 3-71 32-102 (168)
30 cd08048 TAF11 TATA Binding Pro 95.8 0.049 1.1E-06 46.7 8.1 66 3-68 16-84 (85)
31 PF12348 CLASP_N: CLASP N term 95.2 0.19 4.2E-06 48.9 10.9 184 188-390 20-216 (228)
32 PF15511 CENP-T: Centromere ki 94.8 0.065 1.4E-06 58.2 7.1 58 3-60 351-414 (414)
33 PF03847 TFIID_20kDa: Transcri 94.8 0.15 3.3E-06 41.9 7.5 62 6-67 2-64 (68)
34 KOG1142 Transcription initiati 94.5 0.097 2.1E-06 53.2 6.9 71 16-87 168-239 (258)
35 COG5094 TAF9 Transcription ini 94.3 0.1 2.3E-06 47.5 5.9 61 8-68 19-82 (145)
36 KOG4336 TBP-associated transcr 93.4 0.22 4.9E-06 51.6 7.2 70 8-77 10-81 (323)
37 smart00414 H2A Histone 2A. 93.1 0.29 6.2E-06 43.7 6.6 64 4-67 10-74 (106)
38 KOG2389 Predicted bromodomain 93.1 0.25 5.4E-06 52.1 7.0 67 5-71 31-97 (353)
39 KOG0870 DNA polymerase epsilon 92.8 0.43 9.3E-06 45.6 7.5 71 3-73 10-83 (172)
40 PF04719 TAFII28: hTAFII28-lik 92.8 0.47 1E-05 41.2 7.2 66 2-67 22-89 (90)
41 COG5262 HTA1 Histone H2A [Chro 92.5 0.27 5.8E-06 44.5 5.4 64 3-66 26-90 (132)
42 KOG2023 Nuclear transport rece 92.4 2.2 4.7E-05 49.0 13.5 119 233-357 276-443 (885)
43 PLN00154 histone H2A; Provisio 92.2 0.48 1E-05 44.0 6.9 65 3-67 38-104 (136)
44 PF02985 HEAT: HEAT repeat; I 91.6 0.4 8.6E-06 32.9 4.4 30 255-293 1-30 (31)
45 smart00427 H2B Histone H2B. 91.5 0.53 1.1E-05 40.8 6.0 49 20-68 19-67 (89)
46 KOG1756 Histone 2A [Chromatin 91.4 0.48 1E-05 43.4 5.9 64 3-66 27-91 (131)
47 KOG1242 Protein containing ada 91.3 10 0.00022 43.1 17.2 210 168-393 168-457 (569)
48 PF12460 MMS19_C: RNAPII trans 91.2 11 0.00023 40.9 17.1 192 194-393 24-234 (415)
49 KOG2023 Nuclear transport rece 90.6 1.4 3E-05 50.4 9.8 195 194-405 377-571 (885)
50 PF13513 HEAT_EZ: HEAT-like re 90.5 0.19 4.1E-06 38.4 2.1 55 277-333 1-55 (55)
51 PTZ00017 histone H2A; Provisio 90.4 0.65 1.4E-05 43.1 5.9 64 4-67 28-92 (134)
52 PTZ00463 histone H2B; Provisio 90.1 0.95 2.1E-05 41.0 6.5 48 21-68 47-94 (117)
53 PLN00158 histone H2B; Provisio 89.4 1.1 2.3E-05 40.7 6.3 48 21-68 46-93 (116)
54 PLN00156 histone H2AX; Provisi 89.2 0.62 1.3E-05 43.5 4.8 64 4-67 30-94 (139)
55 KOG1242 Protein containing ada 89.1 17 0.00037 41.3 16.7 198 175-386 134-346 (569)
56 KOG2171 Karyopherin (importin) 89.1 7 0.00015 47.1 14.3 208 174-393 4-248 (1075)
57 PLN00153 histone H2A; Provisio 89.0 0.59 1.3E-05 43.1 4.5 50 18-67 40-89 (129)
58 PLN00157 histone H2A; Provisio 88.4 0.97 2.1E-05 41.9 5.5 64 4-67 27-91 (132)
59 KOG1745 Histones H3 and H4 [Ch 88.0 0.3 6.6E-06 45.3 1.9 49 21-69 86-134 (137)
60 KOG0212 Uncharacterized conser 87.3 5.3 0.00012 45.1 11.2 148 176-357 24-176 (675)
61 KOG1824 TATA-binding protein-i 86.3 12 0.00026 44.8 13.7 141 205-356 514-666 (1233)
62 PF02269 TFIID-18kDa: Transcri 85.3 1 2.2E-05 39.2 3.6 49 19-67 18-66 (93)
63 PRK07452 DNA polymerase III su 85.2 2.4 5.1E-05 43.9 7.0 60 6-66 136-197 (326)
64 KOG0871 Class 2 transcription 84.5 5.3 0.00012 37.7 8.1 67 4-70 13-81 (156)
65 PF05236 TAF4: Transcription i 83.6 1 2.2E-05 45.9 3.4 63 7-69 51-119 (264)
66 cd08045 TAF4 TATA Binding Prot 83.1 4.1 8.9E-05 40.3 7.3 48 6-53 51-98 (212)
67 cd07978 TAF13 The TATA Binding 82.4 8.3 0.00018 33.6 8.1 58 9-67 8-66 (92)
68 PTZ00252 histone H2A; Provisio 82.0 4.3 9.3E-05 37.8 6.4 49 19-67 42-92 (134)
69 PRK06585 holA DNA polymerase I 82.0 3.3 7.1E-05 43.2 6.5 60 7-67 149-209 (343)
70 PF14911 MMS22L_C: S-phase gen 82.0 16 0.00035 39.5 11.7 137 212-356 204-352 (373)
71 PRK05574 holA DNA polymerase I 81.9 3.8 8.2E-05 42.2 6.9 60 7-67 153-212 (340)
72 TIGR01128 holA DNA polymerase 81.9 3.9 8.5E-05 41.3 6.9 60 7-67 118-177 (302)
73 PF09415 CENP-X: CENP-S associ 81.3 2.1 4.5E-05 35.7 3.8 61 5-66 1-66 (72)
74 COG1466 HolA DNA polymerase II 80.7 4.4 9.4E-05 42.6 6.9 58 7-65 147-204 (334)
75 cd00020 ARM Armadillo/beta-cat 80.3 7.1 0.00015 32.9 7.0 94 208-316 8-103 (120)
76 KOG3423 Transcription initiati 79.0 10 0.00023 36.5 8.1 68 3-70 86-167 (176)
77 KOG3219 Transcription initiati 78.7 2.7 6E-05 41.3 4.3 70 2-71 111-181 (195)
78 PRK07914 hypothetical protein; 78.7 4.6 0.0001 42.0 6.3 59 6-66 134-192 (320)
79 PRK05629 hypothetical protein; 78.1 5.8 0.00013 41.2 6.8 57 7-65 133-189 (318)
80 PRK05907 hypothetical protein; 77.6 5.3 0.00012 41.9 6.4 60 6-66 140-201 (311)
81 cd00020 ARM Armadillo/beta-cat 77.4 18 0.0004 30.3 8.7 70 207-291 49-119 (120)
82 KOG2171 Karyopherin (importin) 77.3 33 0.00072 41.7 13.3 195 193-404 330-526 (1075)
83 PRK08487 DNA polymerase III su 77.1 7.1 0.00015 40.8 7.2 57 6-65 141-197 (328)
84 PF13251 DUF4042: Domain of un 76.8 17 0.00038 35.4 9.2 139 233-383 6-177 (182)
85 PF11864 DUF3384: Domain of un 72.8 1.1E+02 0.0023 33.9 15.2 159 168-333 64-283 (464)
86 PF13654 AAA_32: AAA domain; P 72.7 12 0.00025 42.1 7.8 61 8-68 435-506 (509)
87 PF03540 TFIID_30kDa: Transcri 72.5 23 0.00049 27.8 7.1 48 3-50 2-49 (51)
88 KOG1248 Uncharacterized conser 71.7 67 0.0015 39.4 13.9 129 279-415 799-933 (1176)
89 PF01602 Adaptin_N: Adaptin N 71.5 43 0.00094 36.5 11.8 69 251-333 111-179 (526)
90 PF12231 Rif1_N: Rap1-interact 71.1 1.5E+02 0.0033 31.7 15.9 228 165-409 80-333 (372)
91 PF10508 Proteasom_PSMB: Prote 68.7 47 0.001 37.1 11.5 159 172-342 35-199 (503)
92 TIGR02902 spore_lonB ATP-depen 67.9 18 0.00039 40.7 8.0 62 8-70 271-334 (531)
93 PRK09687 putative lyase; Provi 67.3 19 0.00042 37.1 7.5 57 274-336 102-158 (280)
94 COG5247 BUR6 Class 2 transcrip 66.9 18 0.00039 32.3 6.1 63 3-67 23-88 (113)
95 TIGR02397 dnaX_nterm DNA polym 65.1 14 0.00031 38.3 6.2 58 7-66 183-240 (355)
96 KOG1744 Histone H2B [Chromatin 64.1 19 0.00041 33.3 5.9 48 21-68 56-103 (127)
97 PF08506 Cse1: Cse1; InterPro 63.9 38 0.00082 36.5 9.2 107 275-381 223-338 (370)
98 PRK12402 replication factor C 62.6 17 0.00037 37.2 6.2 58 7-67 191-248 (337)
99 PF12717 Cnd1: non-SMC mitotic 61.9 48 0.001 31.5 8.7 103 276-393 1-106 (178)
100 COG5150 Class 2 transcription 56.6 51 0.0011 30.6 7.3 68 4-71 12-81 (148)
101 PF03224 V-ATPase_H_N: V-ATPas 56.4 2.5E+02 0.0054 29.1 13.6 200 166-390 24-231 (312)
102 PF13646 HEAT_2: HEAT repeats; 56.0 75 0.0016 25.6 7.8 51 274-336 11-61 (88)
103 PRK09687 putative lyase; Provi 56.0 22 0.00048 36.6 5.6 64 254-336 159-222 (280)
104 PF12348 CLASP_N: CLASP N term 55.7 61 0.0013 31.4 8.4 105 273-383 17-126 (228)
105 KOG1824 TATA-binding protein-i 55.2 3.3E+02 0.0071 33.4 15.1 145 226-384 226-406 (1233)
106 PRK14964 DNA polymerase III su 54.2 27 0.00059 39.1 6.3 58 7-66 182-239 (491)
107 PF06371 Drf_GBD: Diaphanous G 53.9 12 0.00026 35.1 3.1 78 203-291 107-186 (187)
108 PRK09087 hypothetical protein; 52.1 69 0.0015 31.9 8.2 60 8-68 161-222 (226)
109 TIGR00764 lon_rel lon-related 51.8 49 0.0011 38.0 8.0 60 9-68 318-391 (608)
110 PF03378 CAS_CSE1: CAS/CSE pro 51.6 1.4E+02 0.0029 33.1 11.1 140 247-408 19-175 (435)
111 KOG3901 Transcription initiati 50.9 38 0.00082 30.4 5.4 42 23-67 30-71 (109)
112 COG5248 TAF19 Transcription in 50.8 39 0.00084 30.6 5.4 43 23-67 30-72 (126)
113 PF12719 Cnd3: Nuclear condens 50.5 36 0.00079 35.0 6.2 57 275-333 76-141 (298)
114 KOG1823 DRIM (Down-regulated i 50.5 54 0.0012 40.9 8.3 117 233-361 544-663 (1364)
115 PF12074 DUF3554: Domain of un 50.5 85 0.0018 32.8 9.0 91 215-315 164-255 (339)
116 KOG1241 Karyopherin (importin) 50.3 4.7E+02 0.01 31.3 15.2 173 201-386 485-674 (859)
117 PRK14970 DNA polymerase III su 49.4 38 0.00082 35.7 6.2 57 8-66 175-231 (367)
118 KOG1658 DNA polymerase epsilon 48.6 15 0.00032 35.1 2.6 69 1-69 57-126 (162)
119 KOG0212 Uncharacterized conser 47.8 2.9E+02 0.0062 31.9 12.7 161 206-382 162-323 (675)
120 COG5208 HAP5 CCAAT-binding fac 47.8 32 0.00069 34.6 4.9 67 4-70 110-177 (286)
121 TIGR03015 pepcterm_ATPase puta 47.2 73 0.0016 31.5 7.6 59 11-69 203-267 (269)
122 KOG1659 Class 2 transcription 46.3 69 0.0015 32.2 7.0 67 3-69 13-80 (224)
123 PRK14961 DNA polymerase III su 45.3 33 0.00073 36.4 5.1 61 8-70 186-246 (363)
124 KOG1967 DNA repair/transcripti 43.9 1.2E+02 0.0026 36.6 9.4 141 173-319 862-1010(1030)
125 PRK09111 DNA polymerase III su 43.6 49 0.0011 38.0 6.3 57 7-65 198-254 (598)
126 PRK00440 rfc replication facto 43.3 56 0.0012 33.1 6.2 57 7-66 168-224 (319)
127 PF01602 Adaptin_N: Adaptin N 43.2 3E+02 0.0066 29.9 12.3 57 278-339 392-448 (526)
128 PF13513 HEAT_EZ: HEAT-like re 43.0 25 0.00055 26.5 2.8 42 240-290 14-55 (55)
129 PF10274 ParcG: Parkin co-regu 42.6 99 0.0021 30.4 7.4 92 202-296 71-168 (183)
130 PRK06620 hypothetical protein; 42.2 62 0.0013 31.9 6.1 57 8-66 155-214 (214)
131 PF12717 Cnd1: non-SMC mitotic 41.9 1.5E+02 0.0034 28.0 8.6 55 274-333 36-90 (178)
132 PRK08727 hypothetical protein; 41.7 72 0.0016 31.7 6.6 57 9-67 171-230 (233)
133 PF11865 DUF3385: Domain of un 41.7 2.3E+02 0.005 26.8 9.6 122 248-383 2-160 (160)
134 PF08623 TIP120: TATA-binding 41.1 1.5E+02 0.0032 28.8 8.3 127 248-382 3-139 (169)
135 PRK14953 DNA polymerase III su 40.6 59 0.0013 36.4 6.3 57 7-65 185-241 (486)
136 PRK14955 DNA polymerase III su 40.5 61 0.0013 34.9 6.3 59 7-66 193-255 (397)
137 KOG0915 Uncharacterized conser 38.2 73 0.0016 40.2 6.9 79 200-293 991-1069(1702)
138 PF05004 IFRD: Interferon-rela 37.9 3.5E+02 0.0076 28.4 11.2 98 247-354 79-184 (309)
139 PTZ00429 beta-adaptin; Provisi 37.5 5.5E+02 0.012 30.6 13.7 76 246-334 132-207 (746)
140 PRK14962 DNA polymerase III su 37.2 82 0.0018 35.1 6.7 58 8-67 184-241 (472)
141 PRK00411 cdc6 cell division co 36.7 1.3E+02 0.0027 31.8 7.8 49 20-68 228-282 (394)
142 PRK08084 DNA replication initi 36.7 1.1E+02 0.0024 30.3 7.1 57 9-66 176-234 (235)
143 COG5162 Transcription initiati 36.0 1.8E+02 0.004 28.2 7.8 47 3-49 88-134 (197)
144 PRK14954 DNA polymerase III su 35.1 65 0.0014 37.2 5.7 57 8-65 194-254 (620)
145 TIGR03420 DnaA_homol_Hda DnaA 34.6 1.6E+02 0.0035 28.2 7.7 56 9-66 168-226 (226)
146 PRK06645 DNA polymerase III su 34.2 90 0.002 35.2 6.5 60 7-67 194-255 (507)
147 COG1938 Archaeal enzymes of AT 34.1 1E+02 0.0023 31.6 6.3 46 8-54 192-237 (244)
148 COG5593 Nucleic-acid-binding p 34.1 72 0.0016 36.3 5.5 110 210-333 174-294 (821)
149 KOG1241 Karyopherin (importin) 34.0 4.5E+02 0.0097 31.4 11.8 135 207-353 360-503 (859)
150 KOG1851 Uncharacterized conser 33.1 1.8E+02 0.0038 37.2 8.9 121 206-340 1521-1646(1710)
151 COG1067 LonB Predicted ATP-dep 32.8 1.2E+02 0.0027 35.2 7.4 60 9-68 327-399 (647)
152 TIGR00635 ruvB Holliday juncti 32.7 1.7E+02 0.0038 29.6 7.8 60 8-68 167-229 (305)
153 PRK14963 DNA polymerase III su 32.6 91 0.002 35.0 6.2 57 7-66 182-238 (504)
154 KOG1248 Uncharacterized conser 32.3 3.4E+02 0.0074 33.7 11.0 116 170-298 781-904 (1176)
155 KOG1967 DNA repair/transcripti 31.5 3.8E+02 0.0082 32.7 10.9 118 244-377 899-1021(1030)
156 TIGR00362 DnaA chromosomal rep 31.1 1.2E+02 0.0026 32.5 6.6 58 8-67 276-336 (405)
157 COG5181 HSH155 U2 snRNP splice 30.7 3.8E+02 0.0082 31.5 10.4 124 250-383 600-762 (975)
158 PRK04195 replication factor C 30.5 1.1E+02 0.0025 33.7 6.5 55 8-65 168-222 (482)
159 KOG2032 Uncharacterized conser 30.4 3E+02 0.0065 31.2 9.4 107 278-388 273-379 (533)
160 PRK14971 DNA polymerase III su 30.4 75 0.0016 36.6 5.2 57 7-65 187-243 (614)
161 PRK06305 DNA polymerase III su 29.6 1.2E+02 0.0026 33.6 6.4 56 8-65 188-243 (451)
162 KOG1991 Nuclear transport rece 29.3 1E+03 0.022 29.4 13.9 136 208-353 407-552 (1010)
163 PRK00080 ruvB Holliday junctio 29.2 2.1E+02 0.0045 29.8 7.8 62 8-70 188-252 (328)
164 PRK06893 DNA replication initi 29.0 1.7E+02 0.0036 28.9 6.8 58 8-66 169-228 (229)
165 PRK14959 DNA polymerase III su 28.5 1.2E+02 0.0027 35.1 6.4 56 8-65 186-241 (624)
166 PTZ00361 26 proteosome regulat 27.7 61 0.0013 35.8 3.7 37 31-67 387-423 (438)
167 PF10363 DUF2435: Protein of u 27.5 1.9E+02 0.004 25.1 6.0 66 277-346 17-82 (92)
168 KOG3547 Bestrophin (Best vitel 27.5 77 0.0017 35.3 4.4 68 165-245 51-118 (450)
169 PRK14958 DNA polymerase III su 27.2 1.4E+02 0.0031 33.6 6.5 62 8-71 186-247 (509)
170 PRK14950 DNA polymerase III su 27.1 1.3E+02 0.0028 34.3 6.3 57 8-66 187-243 (585)
171 PF14500 MMS19_N: Dos2-interac 27.1 3.3E+02 0.0072 27.9 8.7 109 268-382 4-113 (262)
172 PF03542 Tuberin: Tuberin; In 27.1 5.2E+02 0.011 27.9 10.5 122 226-355 155-283 (356)
173 KOG2274 Predicted importin 9 [ 26.8 4.6E+02 0.0099 31.9 10.5 151 229-393 633-786 (1005)
174 PRK05563 DNA polymerase III su 26.7 1.4E+02 0.003 34.0 6.4 57 7-65 185-241 (559)
175 cd00155 RasGEF Guanine nucleot 26.5 2.6E+02 0.0057 27.3 7.7 72 167-241 118-199 (237)
176 COG5096 Vesicle coat complex, 26.4 1.1E+03 0.024 28.3 13.5 145 169-336 50-196 (757)
177 PF14500 MMS19_N: Dos2-interac 26.1 6.4E+02 0.014 25.8 10.6 116 187-314 11-133 (262)
178 PF12460 MMS19_C: RNAPII trans 26.0 8.6E+02 0.019 26.3 13.5 195 171-388 186-402 (415)
179 KOG0567 HEAT repeat-containing 26.0 78 0.0017 33.1 3.8 75 305-380 4-98 (289)
180 TIGR02928 orc1/cdc6 family rep 25.6 3.1E+02 0.0068 28.4 8.5 49 20-68 220-274 (365)
181 PRK08451 DNA polymerase III su 25.6 1.6E+02 0.0035 33.5 6.6 57 7-65 183-239 (535)
182 PF08454 RIH_assoc: RyR and IP 25.4 2.4E+02 0.0052 25.2 6.4 78 225-317 5-85 (109)
183 PRK13765 ATP-dependent proteas 25.3 2.5E+02 0.0055 32.6 8.2 59 8-66 323-398 (637)
184 PF12755 Vac14_Fab1_bd: Vacuol 24.9 4.6E+02 0.0099 22.8 8.0 82 285-372 8-89 (97)
185 PRK08691 DNA polymerase III su 24.9 1.7E+02 0.0036 34.6 6.7 60 7-68 185-244 (709)
186 PRK14960 DNA polymerase III su 24.9 1E+02 0.0023 36.1 5.0 63 7-71 184-246 (702)
187 PF08064 UME: UME (NUC010) dom 24.2 2.4E+02 0.0051 24.9 6.2 73 306-384 13-87 (107)
188 KOG1657 CCAAT-binding factor, 24.0 1.2E+02 0.0026 31.0 4.7 66 4-69 75-141 (236)
189 smart00323 RasGAP GTPase-activ 23.9 3.6E+02 0.0079 28.4 8.6 117 206-331 69-203 (344)
190 PRK06647 DNA polymerase III su 23.6 1.7E+02 0.0037 33.4 6.4 58 8-67 186-243 (563)
191 COG0588 GpmA Phosphoglycerate 23.6 55 0.0012 33.1 2.2 51 281-331 37-97 (230)
192 smart00544 MA3 Domain in DAP-5 23.3 4.1E+02 0.0088 22.8 7.5 47 250-305 32-78 (113)
193 KOG1240 Protein kinase contain 23.0 5E+02 0.011 32.7 10.1 200 175-398 466-708 (1431)
194 KOG0211 Protein phosphatase 2A 22.8 1.9E+02 0.0042 34.4 6.7 75 274-350 529-605 (759)
195 smart00147 RasGEF Guanine nucl 22.8 3.3E+02 0.0071 26.9 7.6 71 167-241 118-198 (242)
196 COG1737 RpiR Transcriptional r 22.6 2.3E+02 0.0049 29.1 6.6 78 3-81 47-143 (281)
197 PRK00149 dnaA chromosomal repl 22.4 1.6E+02 0.0034 32.2 5.7 58 8-67 288-348 (450)
198 PRK08903 DnaA regulatory inact 22.4 2.5E+02 0.0055 27.2 6.7 57 8-66 165-224 (227)
199 TIGR01242 26Sp45 26S proteasom 22.1 91 0.002 33.0 3.7 33 35-67 330-362 (364)
200 PF04510 DUF577: Family of unk 21.8 6.8E+02 0.015 24.5 9.1 94 252-359 1-95 (174)
201 cd05136 RasGAP_DAB2IP The DAB2 21.6 9.6E+02 0.021 25.3 11.6 105 207-315 46-164 (309)
202 PF10508 Proteasom_PSMB: Prote 21.2 1.2E+03 0.025 26.1 13.5 127 192-335 18-148 (503)
203 PRK14087 dnaA chromosomal repl 21.1 2.1E+02 0.0046 31.6 6.4 60 8-67 283-347 (450)
204 COG1224 TIP49 DNA helicase TIP 21.0 2E+02 0.0044 31.6 5.8 58 9-67 370-431 (450)
205 PRK14965 DNA polymerase III su 20.7 2E+02 0.0043 32.9 6.2 56 8-65 186-241 (576)
206 PRK05896 DNA polymerase III su 20.5 2.3E+02 0.005 32.8 6.6 55 8-64 186-240 (605)
207 KOG1991 Nuclear transport rece 20.4 1.7E+03 0.036 27.6 15.6 135 236-383 526-667 (1010)
208 PRK14951 DNA polymerase III su 20.4 2.1E+02 0.0045 33.2 6.3 59 7-67 190-248 (618)
209 PF04695 Pex14_N: Peroxisomal 20.3 57 0.0012 30.1 1.5 35 38-72 3-51 (136)
210 PF12231 Rif1_N: Rap1-interact 20.3 1.1E+03 0.023 25.3 12.4 144 204-358 32-185 (372)
211 PF08369 PCP_red: Proto-chloro 20.2 1.5E+02 0.0033 22.4 3.5 32 33-64 12-44 (45)
212 COG4996 Predicted phosphatase 20.2 85 0.0018 29.7 2.5 74 36-109 41-135 (164)
213 PRK14957 DNA polymerase III su 20.2 2.2E+02 0.0048 32.5 6.3 58 8-67 186-243 (546)
214 cd05392 RasGAP_Neurofibromin_l 20.1 8.1E+02 0.017 25.6 10.2 119 206-331 44-177 (323)
215 PRK00034 gatC aspartyl/glutamy 20.1 2.8E+02 0.006 23.6 5.6 36 1-38 1-36 (95)
216 PF09862 DUF2089: Protein of u 20.1 1.3E+02 0.0027 27.5 3.6 27 287-313 52-78 (113)
No 1
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=2.6e-115 Score=923.06 Aligned_cols=523 Identities=41% Similarity=0.614 Sum_probs=441.7
Q ss_pred CCCC-hHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhccCCCCccCCCCCC
Q 009716 2 SIVP-KETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNVEPIYGFASGD 80 (528)
Q Consensus 2 s~~~-~e~V~~iAes~Gi~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~~nvePlyGy~s~~ 80 (528)
++++ +|+++.+|||+||++|+||+|..||+||||||+||+|+|.|||+|+||++||++||+.||+++|+||+|||.+++
T Consensus 9 ~v~s~~Es~k~vAEslGi~nl~deaa~~La~dv~yrikEI~Q~aaKfm~hskR~kLtv~DV~~ALr~~nVep~yg~~s~~ 88 (576)
T KOG2549|consen 9 TVVSPKESVKVVAESLGITNLNDEAALLLAEDVEYRIKEIVQDAAKFMVHSKRTKLTVDDVDYALRSLNVEPLYGFGAQE 88 (576)
T ss_pred cccCcHHHHHHHHHHhCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcCcHHHHHHHHhhcccccccCcccCc
Confidence 4566 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccceecCCC-CceeeecCcccChHHhhcCCCCCCCCCCceeEEEEEeccccCCCCCCCCCcC--------Ccc------
Q 009716 81 SLRFKRASGL-KDLYYIDDKDVELRNVIETPLPKAPLDTSVAVHWLAIEGVQPAIPENAPVDA--------VSD------ 145 (528)
Q Consensus 81 pl~f~~~~g~-~~ly~~eD~evdl~~ii~~~lpk~P~~~s~~aHWLaIeGvQP~IPeNp~~~~--------p~~------ 145 (528)
+++|+++.|+ +++||.+|+||||++++++|+||+|+++++++|||+||||||+|||||++.. +..
T Consensus 89 ~i~fr~a~~~~r~ly~~~d~EVD~d~~i~~plpkvP~d~~i~sHWL~iEGVQP~iPeNp~p~~~~~~~~~~~~~~~~~~~ 168 (576)
T KOG2549|consen 89 IIPFRKASGGGRELYYPEDEEVDLDEIINAPLPKVPLDVSIKSHWLAIEGVQPAIPENPPPLEKNVQKKEVIEPAIKAPE 168 (576)
T ss_pred eeeccccCCCCceeecCchhhcchhhhhcCCCCCCCccceeeeeeeeeccccccCCCCCCccccchhhhcccchhhhccC
Confidence 9999998654 8999999999999999999999999999999999999999999999997521 000
Q ss_pred Ccc------ccc----ccCCceecccCCccccCcHHHHHHHHHHHHHhhcCCChHHHHHHHHHhhhcCCccccchhhHHH
Q 009716 146 GRR------SEY----REDGISVDIRLPVKHVLSKELQLYFDKIRELTVSRSNSTVFKQALLSLAMDSGLHPLVPYFTYF 215 (528)
Q Consensus 146 ~k~------~~~----k~~~~~v~iK~~vkh~LSkElQ~Yf~kIt~a~l~~~~~~~r~~AL~sL~tD~gL~qLLPYfv~F 215 (528)
+.. +.. ...+.++.+||.++|+||+|||+||++||++|++ +++.+|++||++|+||+|||||+|||++|
T Consensus 169 ~~~~~~~~~~~~~~~~~k~~e~~~~Kp~~~h~LS~ElQlYy~~It~a~~g-~~~~~r~eAL~sL~TDsGL~~LlPyFv~f 247 (576)
T KOG2549|consen 169 GNNPGASTKSSDAVKTLKIGEPVELKPSSKHVLSVELQLYYKEITEACTG-SDEPLRQEALQSLETDSGLQQLLPYFVTF 247 (576)
T ss_pred CCCCCccccccccccccccCCcccccccchhhccHHHHHHHHHHHHHHhc-CCHHHHHHHHHhhccCccHHHHHHHHHHH
Confidence 000 000 1235678899999999999999999999999998 56778999999999999999999999999
Q ss_pred HHHHHhhh--cCCHHHHHHHHHHHHHhhcCCCcccccchhhhHHHHHHHHhccccCCCC-CCCchHHHHHHHHHHHHHHH
Q 009716 216 ISEEVTRS--LKNFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRF-SDNHWDLRNFVADLIASICT 292 (528)
Q Consensus 216 I~e~V~~n--l~nl~~L~~llrmv~ALl~Np~L~LepYLHqLlPsvLTCll~k~l~~~~-~~~hw~LRd~AA~lL~~I~~ 292 (528)
|+|+|+.| ++|+..|+++|+|++||++||+|++|||||+|||+||||+|+|++|.++ .||||+|||+||++|++||+
T Consensus 248 Iae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k 327 (576)
T KOG2549|consen 248 IAEGVSVNIVQNNLELLIYLMRMVRSLLDNPNIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICK 327 (576)
T ss_pred HhhheeeccccccHHHHHHHHHHHHHHhcCCccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHH
Confidence 99999999 7999999999999999999999999999999999999999999999975 89999999999999999999
Q ss_pred HhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhChhhhhhhcccchHHHHHhhhhhhhhHhhhhhhhHHHHH
Q 009716 293 RFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLILPNLELYLKFLEPEMLLEKQKNEMKRHEAW 372 (528)
Q Consensus 293 kf~~~y~~L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~~aVr~lilP~L~~y~~~Le~~l~~~~~~~~~~r~ea~ 372 (528)
+|++.|.+|++||++||.|+|+|+++++++|||||+||++||.++|+.+|+|+|..|+..|++++..+..+|.+.+.||+
T Consensus 328 ~f~~~y~~L~~Rit~tl~k~l~D~~~~~st~YGai~gL~~lg~~~I~~~ilp~L~~~~~~l~~~l~~~~~~n~~~i~ea~ 407 (576)
T KOG2549|consen 328 NFSTLYNNLQPRITRTLSKALLDNKKPLSTHYGAIAGLSELGHEVIRTVILPNLKEYNERLQSVLDVESLSNQLDIYEAN 407 (576)
T ss_pred hhhhHHHHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHhhhhhhhheeccchHHHHHHhhhhcccchhhhhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhhhccchh--ccCCCcchhhcccc-c------CccccccccccCCCCcccccccCC-CCcccc--Cc
Q 009716 373 RVYGALQCAAGLCVYDRLKTV--LLRPPKQSRWESNR-K------GKRKASMDNLMLQPPVKKMATLGP-MGVMPV--NS 440 (528)
Q Consensus 373 ~v~~all~a~g~~~~~~~~~~--~~~~~~~~~~~~~~-~------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~ 440 (528)
+||++|+.|+..|+++++... .+.|-.+...++-| + .||++.-++..-+-|.+.+. +++ +..++. ..
T Consensus 408 ~v~~~llk~~~~ii~~~l~~~~~~~~~~~r~~~~~~g~~l~~e~~~~r~~~l~~~~~~~~~~~l~-~~p~~~~~~~~~~~ 486 (576)
T KOG2549|consen 408 KVYGALLKAENPIIRDKLNSAPDNPVPALRRLRGSLGESLLSEVVKKRQAPLDSSSVTLPVQQLV-APPVMSSAQSLTST 486 (576)
T ss_pred hHHHHHHHHhhHHHHhhhccccCCCCCcchhhcccccHHHHHHHHhhccCccccccccccccccc-CCcccccccccccc
Confidence 999999999999999999999 33444455555666 2 77776645554444555554 222 111111 11
Q ss_pred ccccCCCCCCCCCcccCCCCCcc--c--hhhhhhhhhhhhhccccchhhHHHHHHHHhhhccCccchhHHHHHHhccccc
Q 009716 441 MAVNMQGPSGGFSTPVEGPRAGV--S--MLRHLQNEKMLRREVSNQALKTSTVLAQAWKEDAEGGHLLASLYELFGESMF 516 (528)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~s~~l~q~wk~d~~~g~ll~sl~elfge~~l 516 (528)
+.+.+.-+..|.|..+..|.+.. + .-++.++ .+.+.|-.++...-+..++.|+++.+++..|....+..+.+..
T Consensus 487 ~~v~~~~~~~g~p~~~t~p~~~~~~~~~~~~~~~~--~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~ 564 (576)
T KOG2549|consen 487 QQVSSPTEAPGSPSTSTGPVTSEVPSVVTESTSGP--KVVGPGKSRVVSLPSTGDGKGGATSHSRGVLPPASSPAPLSGS 564 (576)
T ss_pred ceecCCCCCCCCCccCCCCcccCCCCcccccccCC--ccccCCCceeeecccccccccCCCCCCCCccccccCCCCCCcc
Confidence 11222211112222111111111 0 0011111 3334446677777888999999999999999999999999999
Q ss_pred cccCCccccccC
Q 009716 517 SFTRKSELYFFL 528 (528)
Q Consensus 517 ~f~p~~e~~~fl 528 (528)
+|.++.+++.|.
T Consensus 565 ~~~~~~q~~~~~ 576 (576)
T KOG2549|consen 565 PACGSKQESVDS 576 (576)
T ss_pred ccccccccccCC
Confidence 999999999774
No 2
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.1e-102 Score=778.62 Aligned_cols=393 Identities=42% Similarity=0.676 Sum_probs=357.8
Q ss_pred CCChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhccCCCCccCCCCCCCc
Q 009716 3 IVPKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNVEPIYGFASGDSL 82 (528)
Q Consensus 3 ~~~~e~V~~iAes~Gi~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~~nvePlyGy~s~~pl 82 (528)
+|++||||++|||+||+|++||++.+||.|+||||+||+|+|.|||+||||+.||.+||+.||+.+|+||+|||....|+
T Consensus 5 ~ws~et~KdvAeslGi~Ni~Dd~l~alamDlEYRI~ev~qea~KFmvhSKRtvLt~dDis~ALr~lNVePLyGyd~~r~l 84 (450)
T COG5095 5 LWSKETLKDVAESLGISNIDDDALRALAMDLEYRIKEVCQEASKFMVHSKRTVLTIDDISYALRSLNVEPLYGYDPSRPL 84 (450)
T ss_pred eecHHHHHHHHHHcCCcccccHHHHHHHHhHHHHHHHHHHHHHHHhhcccceeeeHHhHHHHHHhcCCCcccCCCCCcch
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceec--CCCCceeeecCcccChHHhhcCCCCCCCCCCceeEEEEEeccccCCCCCCCCCcC------CccCc-------
Q 009716 83 RFKRA--SGLKDLYYIDDKDVELRNVIETPLPKAPLDTSVAVHWLAIEGVQPAIPENAPVDA------VSDGR------- 147 (528)
Q Consensus 83 ~f~~~--~g~~~ly~~eD~evdl~~ii~~~lpk~P~~~s~~aHWLaIeGvQP~IPeNp~~~~------p~~~k------- 147 (528)
.|..+ .+++.+||++|+||||+++||+||||+|+.+++++||||||||||+|||||.+.. ++...
T Consensus 85 ~fs~v~~g~gqsvYYlddEEvDfe~~in~PLPkVPr~~s~~sHWLAiEGVQPaIpqNP~l~d~~V~~~~~k~T~g~~~~a 164 (450)
T COG5095 85 QFSLVFRGLGQSVYYLDDEEVDFEEYINRPLPKVPRRVSIQSHWLAIEGVQPAIPQNPILLDKPVAKWASKDTLGVMPGA 164 (450)
T ss_pred hHHHHHccCCcceEecChhhcCHHHHhcCcCccCCcCcchhhhhhhhcccCccCCCCCCccccccccccccCccccCcCc
Confidence 99876 4568999999999999999999999999999999999999999999999996422 11110
Q ss_pred cc--cc----ccCCceecccCCccccCcHHHHHHHHHHHHHhhcCCChHHHHHHHHHhhhcCCccccchhhHHHHHHHHh
Q 009716 148 RS--EY----REDGISVDIRLPVKHVLSKELQLYFDKIRELTVSRSNSTVFKQALLSLAMDSGLHPLVPYFTYFISEEVT 221 (528)
Q Consensus 148 ~~--~~----k~~~~~v~iK~~vkh~LSkElQ~Yf~kIt~a~l~~~~~~~r~~AL~sL~tD~gL~qLLPYfv~FI~e~V~ 221 (528)
.+ .| -..+.++++||.++|+||||+|+||++|+.+++++++.+.|++||+||++|+|||||+|||++||+|+|+
T Consensus 165 ~t~a~q~~n~v~~~~n~E~KplvkHvLsKELq~YF~kvisal~dEs~~~~r~aAl~sLr~dsGlhQLvPYFi~f~~eqit 244 (450)
T COG5095 165 STAAYQARNGVTSMENAELKPLVKHVLSKELQMYFDKVISALLDESDEQTRDAALESLRNDSGLHQLVPYFIHFFNEQIT 244 (450)
T ss_pred chHHHHHhcCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHH
Confidence 00 01 1234568899999999999999999999999998888899999999999999999999999999999999
Q ss_pred hhcCCHHHHHHHHHHHHHhhcCCCcccccchhhhHHHHHHHHhccccCCCCCC-CchHHHHHHHHHHHHHHHHhCCCchh
Q 009716 222 RSLKNFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSD-NHWDLRNFVADLIASICTRFGHVYQN 300 (528)
Q Consensus 222 ~nl~nl~~L~~llrmv~ALl~Np~L~LepYLHqLlPsvLTCll~k~l~~~~~~-~hw~LRd~AA~lL~~I~~kf~~~y~~ 300 (528)
.|++|+..|..+|.|+.||++|++||++||+||||||+|||+++|++|+.+.+ +|++|||+||.+|..+|++|+++|.+
T Consensus 245 ~Nl~nl~~LtTv~~m~~sLL~N~~iFvdPY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~Ykt 324 (450)
T COG5095 245 KNLKNLEKLTTVVMMYSSLLKNKYIFVDPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKT 324 (450)
T ss_pred HhhhhHHHHHHHHHHHHHHhcCCceeecHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhh
Confidence 99999999999999999999999999999999999999999999999997644 79999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhChhhhhhhcccchHHHHHhhhhhhhhHhhhhhhhHHHHHHHHHHHHH
Q 009716 301 LQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLILPNLELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQC 380 (528)
Q Consensus 301 L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~~aVr~lilP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~v~~all~ 380 (528)
|+|||+||++|+|+|.+++.+|||||+.||+-||.++||.+|.||+..|...+...+. + .|+-...|+.+|.++|-.
T Consensus 325 LkPRvtrTllKafLD~~k~~sT~YGalkgls~l~ke~ir~~i~pn~~~y~rlv~ktle--~-~~e~~~~e~n~~vd~l~d 401 (450)
T COG5095 325 LKPRVTRTLLKAFLDREKTESTQYGALKGLSILSKEVIRTVIKPNADYYVRLVNKTLE--K-GNEEEIYENNRVVDLLKD 401 (450)
T ss_pred hchHHHHHHHHHHHhcccccchhhhhhhhhhhhchhheeeeeccchHHHHHHHHHHHh--c-cchhhcccchHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999888876543 2 355667799999999999
Q ss_pred hhhhhhhhccchhccCCC
Q 009716 381 AAGLCVYDRLKTVLLRPP 398 (528)
Q Consensus 381 a~g~~~~~~~~~~~~~~~ 398 (528)
|.=.+..|-|.-.-.-||
T Consensus 402 alliL~~d~Lpnqr~~~~ 419 (450)
T COG5095 402 ALLILQSDGLPNQRTLPP 419 (450)
T ss_pred HHHHHhccCCCCccCCCC
Confidence 887777776765533333
No 3
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=100.00 E-value=3e-96 Score=763.27 Aligned_cols=333 Identities=55% Similarity=0.932 Sum_probs=310.6
Q ss_pred ChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhccCCCCccCCCCCCCccc
Q 009716 5 PKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNVEPIYGFASGDSLRF 84 (528)
Q Consensus 5 ~~e~V~~iAes~Gi~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~~nvePlyGy~s~~pl~f 84 (528)
|+|+|+.|||++|+++++|||++.||+|+|||+++|+|+|+|||+|+||++||++||+.||+++|+||+|||.++++++|
T Consensus 1 ~~~~i~~ia~~~Gi~~~~~~a~~~La~~~e~~~~~i~~~A~k~~~hskR~~l~~~Di~~Al~~~n~eplyG~~~~~~~~~ 80 (343)
T cd08050 1 PQESIKLIAESLGIDSLSDEVAQLLAEDVEYRLREIIQEAAKFMRHSKRRKLTTSDVNHALRLRNVEPLYGFSSSEPLPF 80 (343)
T ss_pred ChhHHHHHHHHcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHhCCCcccCCCCCccccc
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred eec-CCCCceeeecCcccChHHhhcCCCCCCCCCCceeEEEEEeccccCCCCCCCCCcCCccCcc-------cccccCCc
Q 009716 85 KRA-SGLKDLYYIDDKDVELRNVIETPLPKAPLDTSVAVHWLAIEGVQPAIPENAPVDAVSDGRR-------SEYREDGI 156 (528)
Q Consensus 85 ~~~-~g~~~ly~~eD~evdl~~ii~~~lpk~P~~~s~~aHWLaIeGvQP~IPeNp~~~~p~~~k~-------~~~k~~~~ 156 (528)
+.. .|++++||++|+||||++++++++|++|+++++++||||||||||.|||||++......+. ........
T Consensus 81 ~~~~~~~~~l~~~~D~eidl~~~i~~~lp~~p~~~~~~~hWLaieGvqP~ip~n~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (343)
T cd08050 81 RVSTGGGQELYYVEDKEIDLKDLINTPLPKVPLDVSVKAHWLAIEGVQPLIPENPPPSAIEVQKKESLANAAVKRLKKDE 160 (343)
T ss_pred eeccCCCceEeeCCCCcccHHHhhhcccCCCCCccccccccceecCccCCCCCCCCchhccccccccccccccccccccC
Confidence 554 4678999999999999999999999999999999999999999999999997643221110 01112344
Q ss_pred eecccCCccccCcHHHHHHHHHHHHHhhcCCChHHHHHHHHHhhhcCCccccchhhHHHHHHHHhhhcC-CHHHHHHHHH
Q 009716 157 SVDIRLPVKHVLSKELQLYFDKIRELTVSRSNSTVFKQALLSLAMDSGLHPLVPYFTYFISEEVTRSLK-NFSLLFALMR 235 (528)
Q Consensus 157 ~v~iK~~vkh~LSkElQ~Yf~kIt~a~l~~~~~~~r~~AL~sL~tD~gL~qLLPYfv~FI~e~V~~nl~-nl~~L~~llr 235 (528)
++.+||.++|+||+|||+||++||++|++ +++..|++||++|++|||||||||||++||+++|++|++ |+..|.++|+
T Consensus 161 ~~~~k~~~~~~LS~Elq~yf~~It~a~~~-~~~~~r~~aL~sL~tD~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~ 239 (343)
T cd08050 161 QVLLKPLVRHVLSKELQLYFEEITEALVG-SNEEKRREALQSLRTDPGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMR 239 (343)
T ss_pred cceeeeccccccCHHHHHHHHHHHHHHhC-CCHHHHHHHHHHhccCCCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHH
Confidence 67899999999999999999999999997 456678999999999999999999999999999999998 9999999999
Q ss_pred HHHHhhcCCCcccccchhhhHHHHHHHHhccccCCCC-CCCchHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhc
Q 009716 236 VARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRF-SDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFL 314 (528)
Q Consensus 236 mv~ALl~Np~L~LepYLHqLlPsvLTCll~k~l~~~~-~~~hw~LRd~AA~lL~~I~~kf~~~y~~L~~RI~~tL~k~ll 314 (528)
|++||++||+|+||+|+|+|||++|||+|++++|.++ .++||+|||+||++|+.||++|+++|++|++||+++|.|+|+
T Consensus 240 ~v~ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~ 319 (343)
T cd08050 240 MVRALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALL 319 (343)
T ss_pred HHHHHhcCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999977 899999999999999999999999999999999999999999
Q ss_pred CCCCCchhhhhHHHHHHhhChhhh
Q 009716 315 DPTKSLSQHYGAIQGLAALGPSVV 338 (528)
Q Consensus 315 Dp~k~l~t~YGAI~GL~aLG~~aV 338 (528)
||++++++|||||+||++||+++|
T Consensus 320 d~~~~~~~~YGAi~GL~~lG~~~v 343 (343)
T cd08050 320 DPKKPLTTHYGAIVGLSALGPEAV 343 (343)
T ss_pred CCCCCcchhhHHHHHHHHhCccCC
Confidence 999999999999999999999886
No 4
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=99.96 E-value=1.4e-30 Score=223.82 Aligned_cols=91 Identities=62% Similarity=1.077 Sum_probs=88.1
Q ss_pred HHHHHhccccCCCCC-CCchHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhChhh
Q 009716 259 VITCLVSKRLGNRFS-DNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSV 337 (528)
Q Consensus 259 vLTCll~k~l~~~~~-~~hw~LRd~AA~lL~~I~~kf~~~y~~L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~~a 337 (528)
||||+|+|++|.++. +|||+|||+||++|+.||++|+++|++|++||+++|+++|+||++|+++|||||+||.+||+++
T Consensus 1 vltClv~k~l~~~~~~~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG~~~ 80 (92)
T PF07571_consen 1 VLTCLVGKQLGSRPPVDNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSALGPEA 80 (92)
T ss_pred CeEEEeeccccCCCCCcchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 589999999998774 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccchHHH
Q 009716 338 VHLLILPNLELY 349 (528)
Q Consensus 338 Vr~lilP~L~~y 349 (528)
||.+|+||++.|
T Consensus 81 vr~~ilP~l~~~ 92 (92)
T PF07571_consen 81 VRALILPNLKAY 92 (92)
T ss_pred HHHhhccCcCCC
Confidence 999999999876
No 5
>PF02969 TAF: TATA box binding protein associated factor (TAF); InterPro: IPR004823 The TATA box binding protein associated factor (TAF) is part of the transcription initiation factor TFIID multimeric protein complex. TFIID plays a central role in mediating promoter responses to various activators and repressors. It binds tightly to TAFII-250 and directly interacts with TAFII-40. TFIID is composed of TATA binding protein (TBP)and a number of TBP-associated factors (TAFS). TAF proteins adopt a histone-like fold.; GO: 0006352 transcription initiation, DNA-dependent, 0005634 nucleus; PDB: 1TAF_B.
Probab=99.92 E-value=3.7e-25 Score=178.90 Aligned_cols=66 Identities=56% Similarity=0.838 Sum_probs=53.9
Q ss_pred CCCCChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHh
Q 009716 1 MSIVPKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALN 66 (528)
Q Consensus 1 Ms~~~~e~V~~iAes~Gi~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~ 66 (528)
||.||+|+|+++|||+||++|+||+++.||+|||||||+|+|+|.|||+||||++||++|||.|||
T Consensus 1 ~s~~~~esvk~iAes~Gi~~l~de~a~~La~dveyrlreiiq~a~kfm~hskR~~Lt~~Di~~ALr 66 (66)
T PF02969_consen 1 MSVFSQESVKDIAESLGISNLSDEAAKALAEDVEYRLREIIQEALKFMRHSKRTKLTTDDINSALR 66 (66)
T ss_dssp -----HHHHHHHHHHTT---B-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSB-HHHHHHHH-
T ss_pred CCcCCHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHhC
Confidence 899999999999999999999999999999999999999999999999999999999999999996
No 6
>smart00803 TAF TATA box binding protein associated factor. TAFs (TATA box binding protein associated factors) are part of the transcription initiation factor TFIID multimeric protein complex. TFIID is composed of the TATA box binding protein (TBP) and a number of TAFs. The TAFs provide binding sites for many different transcriptional activators and co-activators that modulate transcription initiation by Pol II. TAF proteins adopt a histone-like fold.
Probab=99.81 E-value=9.6e-20 Score=147.33 Aligned_cols=65 Identities=58% Similarity=0.841 Sum_probs=63.2
Q ss_pred CCCChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHh
Q 009716 2 SIVPKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALN 66 (528)
Q Consensus 2 s~~~~e~V~~iAes~Gi~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~ 66 (528)
+.+|+++|+++|++.|++++|+|++..|++++|||+++|+|+|+|||+|+||++||++||+.||+
T Consensus 1 ~~~p~~~i~ria~~~Gi~ris~~a~~~l~~~~e~rl~~i~~~A~k~~~hakRktlt~~DI~~Alk 65 (65)
T smart00803 1 SWLPKETIKDVAESLGIGNLSDEAAKLLAEDVEYRIKEIVQEALKFMRHSKRTTLTTSDIDSALR 65 (65)
T ss_pred CCCCHHHHHHHHHHCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeecHHHHHHHhC
Confidence 36899999999999999999999999999999999999999999999999999999999999986
No 7
>cd00076 H4 Histone H4, one of the four histones, along with H2A, H2B and H3, which forms the eukaryotic nucleosome core; along with H3, it plays a central role in nucleosome formation; histones bind to DNA and wrap the genetic material into "beads on a string" in which DNA (the string) is wrapped around small blobs of histones (the beads) at regular intervals; play a role in the inheritance of specialized chromosome structures and the control of gene activity; defects in the establishment of proper chromosome structure by histones may activate or silence genes aberrantly and thus lead to disease; the sequence of histone H4 has remained almost invariant in more than 2 billion years of evolution
Probab=99.48 E-value=1.4e-13 Score=116.94 Aligned_cols=73 Identities=26% Similarity=0.389 Sum_probs=71.7
Q ss_pred CCChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhccCCCCccCC
Q 009716 3 IVPKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNVEPIYGF 76 (528)
Q Consensus 3 ~~~~e~V~~iAes~Gi~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~~nvePlyGy 76 (528)
.+|+.+|+++|+..|+.++|+++.+++.+.++.++.+|+++|++|++|++|+|+|++||..||+..| .|+|||
T Consensus 13 gi~k~~I~RLarr~GvkRIS~d~y~e~~~~l~~~l~~I~~dav~ya~Ha~RKTVt~~DV~~alkr~g-~~~ygf 85 (85)
T cd00076 13 GITKPAIRRLARRGGVKRISGGVYDEVRNVLKSYLEDVIRDAVTYTEHAKRKTVTAMDVVYALKRQG-RTLYGY 85 (85)
T ss_pred cCCHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHCC-CCccCC
Confidence 5899999999999999999999999999999999999999999999999999999999999999999 899998
No 8
>PLN00035 histone H4; Provisional
Probab=99.48 E-value=1.6e-13 Score=120.04 Aligned_cols=74 Identities=26% Similarity=0.343 Sum_probs=72.5
Q ss_pred CCChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhccCCCCccCCC
Q 009716 3 IVPKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNVEPIYGFA 77 (528)
Q Consensus 3 ~~~~e~V~~iAes~Gi~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~~nvePlyGy~ 77 (528)
.||+.+|+++|+..|+.++|+++..+|.+.+|.++.+|+++|++|++|++|+|+|++||..||+..+- |+|||.
T Consensus 29 ~ipk~~IrRLARr~GvkRIS~~ay~elr~vle~~l~~I~~dav~ya~HA~RKTV~~~DV~~Alkr~g~-~lyGf~ 102 (103)
T PLN00035 29 GITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGR-TLYGFG 102 (103)
T ss_pred cCCHHHHHHHHHHcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHcCC-cCCCCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999 999996
No 9
>PTZ00015 histone H4; Provisional
Probab=99.43 E-value=4.5e-13 Score=117.18 Aligned_cols=73 Identities=25% Similarity=0.325 Sum_probs=71.4
Q ss_pred CCChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhccCCCCccCC
Q 009716 3 IVPKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNVEPIYGF 76 (528)
Q Consensus 3 ~~~~e~V~~iAes~Gi~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~~nvePlyGy 76 (528)
.||+.+|+++|+..|+.++|+++.+++.+.+|.++.+|+++|++|++|++|+|+|++||..||+..+- |+|||
T Consensus 30 gI~k~~IrRLarr~GvkRIS~d~y~e~r~vle~~l~~I~rdav~~aeHA~RKTVt~~DV~~AlKr~g~-~~ygf 102 (102)
T PTZ00015 30 GITKGAIRRLARRGGVKRISGDIYEEVRGVLKAFLENVVRDSTAYTEYARRKTVTAMDVVYALKRQGR-TLYGF 102 (102)
T ss_pred CCCHHHHHHHHHHcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHhcCC-CCCCC
Confidence 48999999999999999999999999999999999999999999999999999999999999999998 99998
No 10
>COG2036 HHT1 Histones H3 and H4 [Chromatin structure and dynamics]
Probab=98.92 E-value=2.1e-09 Score=92.58 Aligned_cols=70 Identities=26% Similarity=0.359 Sum_probs=67.2
Q ss_pred CCCChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhccCCC
Q 009716 2 SIVPKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNVE 71 (528)
Q Consensus 2 s~~~~e~V~~iAes~Gi~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~~nve 71 (528)
-.+|..+|++|+.+.|..+++.+|.+.|++.+|..+.+|..+|..++.|+||+|++++||..|++.++..
T Consensus 18 ~~Lp~apv~Ri~r~~~~~Rvs~~A~~~l~~~~e~~~~~i~~~A~~~A~ha~RKTV~~~DI~la~~~~~~~ 87 (91)
T COG2036 18 LLLPKAPVRRILRKAGAERVSSSAIEELQEALEEYLEEIAEDAVELAEHAKRKTVKAEDIKLALKRLGRR 87 (91)
T ss_pred hhcCchHHHHHHHHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHHHhccc
Confidence 4689999999999999999999999999999999999999999999999999999999999999998763
No 11
>smart00417 H4 Histone H4.
Probab=98.89 E-value=3.5e-09 Score=87.90 Aligned_cols=62 Identities=24% Similarity=0.249 Sum_probs=59.5
Q ss_pred CCChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHH
Q 009716 3 IVPKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSA 64 (528)
Q Consensus 3 ~~~~e~V~~iAes~Gi~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~A 64 (528)
-+|+.+|+++|...|+.++|+++...+.+-+|.++.+|+.+|++|+.|++|+++|++||..|
T Consensus 13 gI~k~~IrRLaRr~GvkRIS~~~y~elr~vle~~l~~I~rdav~~a~ha~RKTV~~~DV~~a 74 (74)
T smart00417 13 GITKPAIRRLARRGGVKRISGLIYDETRNVLKSFLENVVRDAVTYTEHARRKTVTAMDVVYA 74 (74)
T ss_pred CCCHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHheeC
Confidence 38999999999999999999999999999999999999999999999999999999999754
No 12
>cd07979 TAF9 TATA Binding Protein (TBP) Associated Factor 9 (TAF9) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 9 (TAF9) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. The TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAFs orthologs and paralogs. Human TAF9 has a paralogue gene (TAF9L) whi
Probab=98.67 E-value=9.4e-08 Score=86.10 Aligned_cols=71 Identities=24% Similarity=0.302 Sum_probs=65.6
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhccCCCCccCCCCC
Q 009716 6 KETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNVEPIYGFASG 79 (528)
Q Consensus 6 ~e~V~~iAes~Gi~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~~nvePlyGy~s~ 79 (528)
.+.|.+|.++.|+++.+++|...|.+.++....+|+++|..|++|++|++++++||..|++.+.- |.|.++
T Consensus 4 ~~~v~~iLk~~Gv~~~~~~v~~~Lle~~~ry~~~il~dA~~~a~hA~r~tV~~eDV~lAi~~r~~---~~f~~~ 74 (117)
T cd07979 4 ARVIAAILKSMGITEYEPRVINQLLEFAYRYTTDVLDDAKVYSEHAGKANIDADDVKLAIQSRVD---YSFTSP 74 (117)
T ss_pred HHHHHHHHHHCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc---cCCCCC
Confidence 35799999999999999999999999999999999999999999999999999999999999765 666653
No 13
>smart00576 BTP Bromodomain transcription factors and PHD domain containing proteins. subdomain of archael histone-like transcription factors
Probab=98.38 E-value=1.7e-06 Score=72.21 Aligned_cols=65 Identities=20% Similarity=0.163 Sum_probs=62.1
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhccCC
Q 009716 6 KETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNV 70 (528)
Q Consensus 6 ~e~V~~iAes~Gi~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~~nv 70 (528)
+-+|..|.+..|++..++.+.+.|.+-++.++.++.+.+.++|.|++|++.+..||..||+..++
T Consensus 9 ~~~Vaqil~~~Gf~~~~~sale~ltdi~~~yl~~l~~~~~~~a~~agR~~~~~~Dv~~Al~~~gi 73 (77)
T smart00576 9 RIAVAQILESAGFDSFQESALETLTDILQSYIQELGRTAHSYAELAGRTEPNLGDVVLALENLGI 73 (77)
T ss_pred HHHHHHHHHHcCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCc
Confidence 34688999999999999999999999999999999999999999999999999999999998877
No 14
>PF00125 Histone: Core histone H2A/H2B/H3/H4 histone h2a signature histone h2b signature histone h3 signature histone h4 signature; InterPro: IPR007125 The core histones together with some other DNA binding proteins appear to form a superfamily defined by a common fold and distant sequence similarities [, ]. Some proteins contain local homology domains related to the histone fold [].; GO: 0003677 DNA binding; PDB: 2YFW_D 2YFV_B 1U35_H 2F8N_D 2PYO_D 2NQB_D 3AN2_C 3AZJ_C 3AV1_G 3AZM_G ....
Probab=98.23 E-value=2.4e-06 Score=70.13 Aligned_cols=64 Identities=33% Similarity=0.493 Sum_probs=59.5
Q ss_pred CChHHHHHHHHHcCCC-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhc
Q 009716 4 VPKETIEVIAQSIGVY-----NLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (528)
Q Consensus 4 ~~~e~V~~iAes~Gi~-----~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~ 67 (528)
+|+.+|.+++.+++-. +++.++...|..-+||.+.+|+.+|..+++|+||++|++.||+.|++.
T Consensus 6 ~~~~~~~r~~r~i~~~~~~~~ris~~a~~~L~~~~E~~~~~il~~A~~~a~~~kR~tI~~~DI~~A~r~ 74 (75)
T PF00125_consen 6 IPKFPFSRLLREIGEEILSKYRISSEALVALQSVLEYLLVEILEEAGNLARHAKRKTITPRDIQLAVRI 74 (75)
T ss_dssp SSHHHHHHHHHHHHHTTSSSSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTBSEEGHHHHHHHHHH
T ss_pred cCceEEeeeeehhhcccccccccccccchhhhhhhhhhhhhhhhHHHHHHhhcCCcEecHHHHHHHHhc
Confidence 6778888888888874 899999999999999999999999999999999999999999999875
No 15
>PF00808 CBFD_NFYB_HMF: Histone-like transcription factor (CBF/NF-Y) and archaeal histone; InterPro: IPR003958 The CCAAT-binding factor (CBF) is a mammalian transcription factor that binds to a CCAAT motif in the promoters of a wide variety of genes, including type I collagen and albumin. The factor is a heteromeric complex of A and B subunits, both of which are required for DNA-binding [, ]. The subunits can interact in the absence of DNA-binding, conserved regions in each being important in mediating this interaction. The A subunit can be split into 3 domains on the basis of sequence similarity, a non-conserved N-terminal 'A domain'; a highly-conserved central 'B domain' involved in DNA-binding; and a C-terminal 'C domain', which contains a number of glutamine and acidic residues involved in protein-protein interactions []. The A subunit shows striking similarity to the HAP3 subunit of the yeast CCAAT-binding heterotrimeric transcription factor [, ]. The Kluyveromyces lactis HAP3 protein has been predicted to contain a 4-cysteine zinc finger, which is thought to be present in similar HAP3 and CBF subunit A proteins, in which the third cysteine is replaced by a serine []. This domain is found in the CCAAT transcription factor and archaeal histones.; GO: 0043565 sequence-specific DNA binding, 0005622 intracellular; PDB: 1F1E_A 2BYM_D 2BYK_D 1HTA_A 1B67_A 1JFI_B 1KU5_B 1N1J_A 1BFM_A 1B6W_A ....
Probab=98.14 E-value=9.9e-06 Score=65.14 Aligned_cols=63 Identities=24% Similarity=0.290 Sum_probs=57.5
Q ss_pred CCChHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHH
Q 009716 3 IVPKETIEVIAQSI-GVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSAL 65 (528)
Q Consensus 3 ~~~~e~V~~iAes~-Gi~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL 65 (528)
.+|...|+.|.+.. +..+++.|+...++...|..+..+..+|...+.+.+|++++.+||..|+
T Consensus 2 ~lP~a~vkri~k~~~~~~~vs~ea~~~i~~a~e~Fi~~l~~~A~~~a~~~~rkti~~~Dv~~Av 65 (65)
T PF00808_consen 2 SLPLARVKRIMKSDPDVMRVSKEAVEAIAKAAEEFIQYLAKEANEIAQRDKRKTITYEDVAKAV 65 (65)
T ss_dssp SS-HHHHHHHHHHTSTTSEE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEE-HHHHHHHH
T ss_pred CCChHHHHHHhccCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHC
Confidence 48999999999999 7778999999999999999999999999999999999999999999986
No 16
>cd07981 TAF12 TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of the seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs function such as serving as activator-bind
Probab=98.09 E-value=2.1e-05 Score=65.01 Aligned_cols=64 Identities=20% Similarity=0.278 Sum_probs=57.4
Q ss_pred CChHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhc
Q 009716 4 VPKETIEVIAQSI-GVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (528)
Q Consensus 4 ~~~e~V~~iAes~-Gi~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~ 67 (528)
++++.+..+..++ +-.+++++|...|.+-+|..+.+++.+|.++++|.||++++++||..||+.
T Consensus 2 ~~k~~l~~lv~~id~~~~~~~da~~~l~~~~e~fv~~v~~~a~~lAkHr~~~tv~~~Di~l~l~r 66 (72)
T cd07981 2 LTKRKLQELLKEIDPREQLDPDVEELLLEIADDFVDDVVEDACRLAKHRKSDTLEVKDVQLHLER 66 (72)
T ss_pred CcHHHHHHHHHhhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 5666777777766 346899999999999999999999999999999999999999999999976
No 17
>KOG3467 consensus Histone H4 [Chromatin structure and dynamics]
Probab=97.92 E-value=4.3e-05 Score=64.89 Aligned_cols=73 Identities=26% Similarity=0.367 Sum_probs=68.1
Q ss_pred CChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhccCCCCccCCC
Q 009716 4 VPKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNVEPIYGFA 77 (528)
Q Consensus 4 ~~~e~V~~iAes~Gi~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~~nvePlyGy~ 77 (528)
+.+-+|+++|.-.|..+++--+-++.-......|+.++..|+.+..|+||+++|+.||-.+|+-.+. .+|||.
T Consensus 30 itKpaIRRlARr~GVkRi~G~~yeE~~~~~k~fl~n~i~~A~~yt~HAKRKTvT~~dvv~~LKR~G~-~~~g~~ 102 (103)
T KOG3467|consen 30 ITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGR-TLYGFG 102 (103)
T ss_pred cchHHHHHHHHhcCcchhchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhceeeHHHHHHHHHHcCc-eeeccC
Confidence 4577899999999999999999999999999999999999999999999999999999999999887 578885
No 18
>PF07524 Bromo_TP: Bromodomain associated; InterPro: IPR006565 This bromodomain is found in eukaryotic transcription factors and PHD domain containing proteins (IPR001965 from INTERPRO). The tandem PHD finger-bromodomain is found in many chromatin-associated proteins. It is involved in gene silencing by the human co-repressor KRAB-associated protein 1 (KAP1). The tandem PHD finger-bromodomain of KAP1 has a distinct structure that joins the two protein modules. The first helix, alpha(Z), of an atypical bromodomain forms the central hydrophobic core that anchors the other three helices of the bromodomain on one side and the zinc binding PHD finger on the other []. The Rap1 GTPase-activating protein, Sipa1, is modulated by the cellular bromodomain protein, Brd4. Brd4 belongs to the BET family and is a multifunctional protein involved in transcription, replication, the signal transduction pathway, and cell cycle progression. All of these functions are linked to its association with acetylated chromatin. It has tandem bromodomains []. The dysregulation of the Brd4-associated pathways may play an important role in breast cancer progression []. Bovine papillomavirus type 1 E2 also binds to chromosomes in a complex with Brd4. Interaction with Brd4 is additionally important for E2-mediated transcriptional regulation [, ].
Probab=97.76 E-value=0.00016 Score=60.06 Aligned_cols=65 Identities=22% Similarity=0.252 Sum_probs=61.8
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhccCC
Q 009716 6 KETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNV 70 (528)
Q Consensus 6 ~e~V~~iAes~Gi~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~~nv 70 (528)
+-.|..++++.|++..++.+...|++-+..+++++.+.+.+++.|++|+..+..||..||...|+
T Consensus 9 ~~~va~il~~~GF~~~~~~al~~Ltdi~~~yl~~l~~~~~~~ae~~gRt~~~~~Dv~~al~~~gi 73 (77)
T PF07524_consen 9 RRSVAQILKHAGFDSASPSALDTLTDILQRYLQELGRTAKRYAEHAGRTEPNLQDVEQALEEMGI 73 (77)
T ss_pred HHHHHHHHHHcCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCC
Confidence 34688899999999999999999999999999999999999999999999999999999998876
No 19
>cd00074 H2A Histone 2A; H2A is a subunit of the nucleosome. The nucleosome is an octamer containing two H2A, H2B, H3, and H4 subunits. The H2A subunit performs essential roles in maintaining structural integrity of the nucleosome, chromatin condensation, and binding of specific chromatin-associated proteins.
Probab=97.64 E-value=0.00016 Score=65.21 Aligned_cols=65 Identities=17% Similarity=0.184 Sum_probs=61.9
Q ss_pred CCChHHHHHHHHH-cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhc
Q 009716 3 IVPKETIEVIAQS-IGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (528)
Q Consensus 3 ~~~~e~V~~iAes-~Gi~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~ 67 (528)
.||-.-|.++... .+..+++++++..|+.-+||...||++.|.+.+++.||+++|++||+.|++.
T Consensus 20 ~fPV~ri~R~Lk~~~~a~RVs~~A~VyLaAvLEYL~aEIlelA~n~ak~~k~krItp~hi~lAi~n 85 (115)
T cd00074 20 QFPVGRIHRYLKKGRYAERVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKKRITPRHLQLAVRN 85 (115)
T ss_pred cCcHHHHHHHHHcCccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEcHHHHHHHHhc
Confidence 5788999999987 8889999999999999999999999999999999999999999999999976
No 20
>smart00428 H3 Histone H3.
Probab=97.60 E-value=0.00023 Score=63.15 Aligned_cols=63 Identities=21% Similarity=0.270 Sum_probs=56.0
Q ss_pred HHHHHHHHcCC---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhccCC
Q 009716 8 TIEVIAQSIGV---YNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNV 70 (528)
Q Consensus 8 ~V~~iAes~Gi---~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~~nv 70 (528)
-|+.|++...- -+.+++|..+|.+.+|..+-++.++|..++.|+||.||++.||..|.+.++.
T Consensus 38 LVREI~~~~~~~~~~R~~~~Al~aLQeasE~ylv~lfeda~~~a~HAkRvTl~~kDi~La~rir~~ 103 (105)
T smart00428 38 LVREIAQKFTTGVDLRFQSSAIMALQEAAEAYLVGLFEDTNLLAIHAKRVTIMPKDIQLARRIRGE 103 (105)
T ss_pred HHHHHHHHcCCCCCceeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCcHhhHHHHHHHhcc
Confidence 46777777631 2799999999999999999999999999999999999999999999988764
No 21
>PF02291 TFIID-31kDa: Transcription initiation factor IID, 31kD subunit; InterPro: IPR003162 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription []. TAFII-31 protein is a transcriptional coactivator of the p53 protein [].; GO: 0006352 transcription initiation, DNA-dependent; PDB: 1TAF_A.
Probab=97.22 E-value=0.0012 Score=60.80 Aligned_cols=62 Identities=26% Similarity=0.333 Sum_probs=52.8
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhcc
Q 009716 7 ETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLR 68 (528)
Q Consensus 7 e~V~~iAes~Gi~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~~ 68 (528)
..|..|-+++||++..+.|...|.+.+--+..+|+++|.-++.|++|+.++.+||..|+..+
T Consensus 16 ~~i~~iL~~~Gv~~yeprVv~qLLEfayRYt~~vL~DA~~ya~hA~~~~i~~~DVrLAi~~r 77 (129)
T PF02291_consen 16 RVIHLILKSMGVTEYEPRVVNQLLEFAYRYTSDVLEDAQVYADHAGRSTIDADDVRLAIQSR 77 (129)
T ss_dssp HHHHHHHHHTT---B-THHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSB-HHHHHHHHHHT
T ss_pred HHHHHHHHHcCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCChHHHHHHHHHH
Confidence 46889999999999999999999999977899999999999999999999999999999976
No 22
>PF15630 CENP-S: Kinetochore component CENP-S; PDB: 4DRA_C 4DRB_H 3V9R_C.
Probab=97.13 E-value=0.002 Score=54.03 Aligned_cols=59 Identities=19% Similarity=0.217 Sum_probs=49.8
Q ss_pred HHHHHHHHcCCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHh
Q 009716 8 TIEVIAQSIGVY---NLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALN 66 (528)
Q Consensus 8 ~V~~iAes~Gi~---~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~ 66 (528)
+|..|+|..+.. ++++++..+|++-+-..+..+..+---|++|+||++++++||....|
T Consensus 10 ~v~ki~ee~~~~~~~~~s~~~i~al~ELv~~q~~~~a~DLe~FAkHA~R~tI~~dDV~Ll~R 71 (76)
T PF15630_consen 10 TVGKIVEEEAKEKGVEVSPQFIAALTELVYKQLENLAKDLEAFAKHAGRSTINMDDVKLLAR 71 (76)
T ss_dssp HHHHHHHHCCCCTTSEE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SEE-HHHHHHHTT
T ss_pred HHHHHHHHHHhccCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeecHHHHHHHhh
Confidence 577788887544 49999999999999999999999999999999999999999988765
No 23
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=96.79 E-value=0.0042 Score=54.28 Aligned_cols=79 Identities=22% Similarity=0.383 Sum_probs=63.5
Q ss_pred HHHHHHHHHHhhcCCCcccccchhhhHHHHHHHHhccccCCCCCCCchHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHH
Q 009716 230 LFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTL 309 (528)
Q Consensus 230 L~~llrmv~ALl~Np~L~LepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~~y~~L~~RI~~tL 309 (528)
|..+-.++.||-.. ++.|+..|+|+||.|+ .|++|++|.+|...|..|++-+....-.--..|...|
T Consensus 7 li~Laa~ai~l~~~----~~~~l~~Il~pVL~~~---------~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L 73 (97)
T PF12755_consen 7 LIGLAAVAIALGKD----ISKYLDEILPPVLKCF---------DDQDSRVRYYACEALYNISKVARGEILPYFNEIFDAL 73 (97)
T ss_pred HHHHHHHHHHchHh----HHHHHHHHHHHHHHHc---------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666665 9999999999999995 6889999999999999999987765444456788888
Q ss_pred HHHhcCCCCCch
Q 009716 310 LHAFLDPTKSLS 321 (528)
Q Consensus 310 ~k~llDp~k~l~ 321 (528)
.|.+.|++.+..
T Consensus 74 ~kl~~D~d~~Vr 85 (97)
T PF12755_consen 74 CKLSADPDENVR 85 (97)
T ss_pred HHHHcCCchhHH
Confidence 999998886643
No 24
>KOG3334 consensus Transcription initiation factor TFIID, subunit TAF9 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=96.38 E-value=0.012 Score=54.61 Aligned_cols=63 Identities=22% Similarity=0.269 Sum_probs=57.6
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhccCC
Q 009716 8 TIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNV 70 (528)
Q Consensus 8 ~V~~iAes~Gi~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~~nv 70 (528)
-|..|-.++||.+-.+-+...|-+..=-+...|+++|.-|.+|+++.++.++||..|+.++..
T Consensus 18 ~i~~iL~s~GI~eyEprVi~qlLefa~rYtt~vL~DA~vys~HA~ka~i~~eDVrlA~~~~~~ 80 (148)
T KOG3334|consen 18 VIASILKSLGIQEYEPRVINQLLEFAYRYTTTVLDDAKVYSSHAKKATIDAEDVRLAIQMRVD 80 (148)
T ss_pred HHHHHHHHcCccccChHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHhc
Confidence 467888999999999999998888777779999999999999999999999999999999755
No 25
>PLN00161 histone H3; Provisional
Probab=96.30 E-value=0.016 Score=53.54 Aligned_cols=66 Identities=18% Similarity=0.254 Sum_probs=58.0
Q ss_pred HHHHHHHHcC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhccCCCCc
Q 009716 8 TIEVIAQSIG--VYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNVEPI 73 (528)
Q Consensus 8 ~V~~iAes~G--i~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~~nvePl 73 (528)
-|+.|++... --+...+|..+|-+-.|.+|-++.++|.-++.|+||-+|.+.||..|.+.++..+-
T Consensus 64 LVREI~~~~~~~~~Rfq~~Al~ALQEAsEayLV~lFeda~lcaiHAkRVTlm~kDm~La~rirg~~~~ 131 (135)
T PLN00161 64 LVREISNEMLREPFRWTAEALLALQEATEDFLVHLFEDCNLCAIHAKRVTIMPKDMQLARRIRGPIYG 131 (135)
T ss_pred HHHHHHHhcCCCCcEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccchhhHHHHHHhcccccc
Confidence 4777887763 12788999999999999999999999999999999999999999999999887643
No 26
>PLN00160 histone H3; Provisional
Probab=96.27 E-value=0.014 Score=51.22 Aligned_cols=63 Identities=19% Similarity=0.346 Sum_probs=55.1
Q ss_pred HHHHHHHHcC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhccCC
Q 009716 8 TIEVIAQSIG--VYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNV 70 (528)
Q Consensus 8 ~V~~iAes~G--i~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~~nv 70 (528)
-|+.|++... --+...+|..+|-+-.|..+-.+.++|..++.|+||-+|++.|+..|.+.++.
T Consensus 30 LVREI~~~~~~~~~Rfq~~Al~ALQeAsEayLv~lfed~~lca~HakRVTl~~kD~~L~~rirg~ 94 (97)
T PLN00160 30 LVREIQMEMSREAYRWQGSAILALQEAAEAHLVGLFEDSNLCAIHGKRVTIMPKDMQLARRIRGQ 94 (97)
T ss_pred HHHHHHHHcCCCCcEeeHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccccchhhHHHHHHhhcc
Confidence 4677777653 13688899999999999999999999999999999999999999999987753
No 27
>PLN00121 histone H3; Provisional
Probab=96.23 E-value=0.013 Score=54.30 Aligned_cols=62 Identities=24% Similarity=0.374 Sum_probs=55.2
Q ss_pred HHHHHHHHc--CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhccCC
Q 009716 8 TIEVIAQSI--GVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNV 70 (528)
Q Consensus 8 ~V~~iAes~--Gi~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~~nv 70 (528)
-|+.|++.. ++ +...+|..+|-+-.|.+|-.+.++|..++.|+||-+|++.||..|.+.++.
T Consensus 71 LVREI~~~~~~~~-Rf~~~Al~ALQeaaE~yLv~lfed~~lca~HakRVTl~~kD~~L~~rirg~ 134 (136)
T PLN00121 71 LVREIAQDFKTDL-RFQSSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 134 (136)
T ss_pred HHHHHHHHhCccc-eeeHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcceecchhhHHHHHHhccc
Confidence 466777775 33 688899999999999999999999999999999999999999999988765
No 28
>PTZ00018 histone H3; Provisional
Probab=96.23 E-value=0.013 Score=54.38 Aligned_cols=63 Identities=24% Similarity=0.370 Sum_probs=55.6
Q ss_pred HHHHHHHHc--CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhccCCC
Q 009716 8 TIEVIAQSI--GVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNVE 71 (528)
Q Consensus 8 ~V~~iAes~--Gi~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~~nve 71 (528)
-|+.|++.. ++ +...+|..+|-+-.|.+|-.+.+++..++.|+||-+|++.|+..|.+.++.+
T Consensus 71 LVREI~~~~~~~~-rf~~~al~aLQeaaE~yLv~lfed~~lca~HakRVTl~~kD~~L~~rirg~~ 135 (136)
T PTZ00018 71 LVREIAQDFKTDL-RFQSSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 135 (136)
T ss_pred HHHHHHHHcCCcc-eeeHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcceecchhhHHHHHHhcccC
Confidence 466777664 34 6889999999999999999999999999999999999999999999887653
No 29
>KOG0869 consensus CCAAT-binding factor, subunit A (HAP3) [Transcription]
Probab=96.04 E-value=0.026 Score=53.24 Aligned_cols=69 Identities=16% Similarity=0.152 Sum_probs=62.4
Q ss_pred CCChHHHHHHHHHcCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhccCCC
Q 009716 3 IVPKETIEVIAQSIGV--YNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNVE 71 (528)
Q Consensus 3 ~~~~e~V~~iAes~Gi--~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~~nve 71 (528)
.+|.+.|.+|.+..== ..+++||.+.+-+.|.++|.-|.-||..-..+-||||++.+||=-|+..++.|
T Consensus 32 ~LPIANV~RIMK~~lP~naKIsKDAKE~vQECVSEfISFvT~EAsekC~~EkRKTIngdDllwAm~tLGFe 102 (168)
T KOG0869|consen 32 FLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASEKCQREKRKTINGDDLLWAMSTLGFE 102 (168)
T ss_pred hccHHHHHHHHHhcCCcccccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCcccHHHHHHHHHHcCcH
Confidence 4799999999987632 24999999999999999999999999999999999999999999999988775
No 30
>cd08048 TAF11 TATA Binding Protein (TBP) Associated Factor 11 (TAF11) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 11 (TAF11) is one of several TAFs that bind TBP and are involved in forming the Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAF orthologs and paralogs. Several hypothes
Probab=95.83 E-value=0.049 Score=46.71 Aligned_cols=66 Identities=24% Similarity=0.220 Sum_probs=60.4
Q ss_pred CCChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---CccCHhhHHHHHhcc
Q 009716 3 IVPKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHR---TVLTANDVDSALNLR 68 (528)
Q Consensus 3 ~~~~e~V~~iAes~Gi~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR---~~Lt~~DI~~AL~~~ 68 (528)
-+++..||.+..++-=..++++++..++--....+-||+++|.+.|.+... .-|.++||..|.+.+
T Consensus 16 ~f~k~~iKr~~~~~~~~~v~~~v~i~v~glaKvFVGeivE~A~~V~~~~~~~~~~Pl~P~HireA~rrl 84 (85)
T cd08048 16 SFPKAAIKRLIQSVTGQSVSQNVVIAVAGIAKVFVGEIVEEARDVQEEWGEANTGPLQPRHLREAYRRL 84 (85)
T ss_pred hccHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcHHHHHHHHHh
Confidence 489999999998876689999999999999999999999999999999776 789999999998764
No 31
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=95.18 E-value=0.19 Score=48.93 Aligned_cols=184 Identities=15% Similarity=0.120 Sum_probs=100.2
Q ss_pred ChHHHHHHHHHhhhcCCcc---ccchhhHHHHH---HHHhhhcCCH--HHHHHHHHHHHHhhcCCCcccccchhhhHHHH
Q 009716 188 NSTVFKQALLSLAMDSGLH---PLVPYFTYFIS---EEVTRSLKNF--SLLFALMRVARSLLRNPHIHIEPYLHQMMPSV 259 (528)
Q Consensus 188 ~~~~r~~AL~sL~tD~gL~---qLLPYfv~FI~---e~V~~nl~nl--~~L~~llrmv~ALl~Np~L~LepYLHqLlPsv 259 (528)
+=..|.+||..|+.--.-+ ...+-|+..+. ..+...+.|+ ......+.++..|..+-.-.+++|+..++|++
T Consensus 20 ~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~L 99 (228)
T PF12348_consen 20 DWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLPPL 99 (228)
T ss_dssp SHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 3345666776655432222 33444444444 4555665544 23334455555665555556999999999999
Q ss_pred HHHHhccccCCCCCCCchHHHHHHHHHHHHHHHHhCCCchhHHHHH-HHHHHHHhcCCCCCchhhhhHHHHHHhh-Chhh
Q 009716 260 ITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRV-TRTLLHAFLDPTKSLSQHYGAIQGLAAL-GPSV 337 (528)
Q Consensus 260 LTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~~y~~L~~RI-~~tL~k~llDp~k~l~t~YGAI~GL~aL-G~~a 337 (528)
+.++-.+ .=-+|+.|...|..||..++ ..+++ ...+...+. +++.....+++..|..+ ....
T Consensus 100 l~~~~~~---------~~~i~~~a~~~L~~i~~~~~-----~~~~~~~~~l~~~~~--~Kn~~vR~~~~~~l~~~l~~~~ 163 (228)
T PF12348_consen 100 LKKLGDS---------KKFIREAANNALDAIIESCS-----YSPKILLEILSQGLK--SKNPQVREECAEWLAIILEKWG 163 (228)
T ss_dssp HHGGG------------HHHHHHHHHHHHHHHTTS------H--HHHHHHHHHHTT---S-HHHHHHHHHHHHHHHTT--
T ss_pred HHHHccc---------cHHHHHHHHHHHHHHHHHCC-----cHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHHHHHcc
Confidence 9886432 12699999999999999766 22355 444444443 56777777777665543 2111
Q ss_pred h-hhhccc--chHHHHHhhhhhhhhHhhhhhhhHHHHHHHHHHHHHhhhhhhhhcc
Q 009716 338 V-HLLILP--NLELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQCAAGLCVYDRL 390 (528)
Q Consensus 338 V-r~lilP--~L~~y~~~Le~~l~~~~~~~~~~r~ea~~v~~all~a~g~~~~~~~ 390 (528)
. ...+-+ .++.+.+.|...+. ..+..+|..|.+++.++....|..-...+
T Consensus 164 ~~~~~l~~~~~~~~l~~~l~~~l~---D~~~~VR~~Ar~~~~~l~~~~~~~a~~~~ 216 (228)
T PF12348_consen 164 SDSSVLQKSAFLKQLVKALVKLLS---DADPEVREAARECLWALYSHFPERAESIL 216 (228)
T ss_dssp ---GGG--HHHHHHHHHHHHHHHT---SS-HHHHHHHHHHHHHHHHHH-HHH----
T ss_pred chHhhhcccchHHHHHHHHHHHCC---CCCHHHHHHHHHHHHHHHHHCCHhhccch
Confidence 0 000111 13455555555554 34677899999999999888776654433
No 32
>PF15511 CENP-T: Centromere kinetochore component CENP-T; PDB: 3B0D_T 3B0C_T 3VH5_T 3VH6_T.
Probab=94.81 E-value=0.065 Score=58.20 Aligned_cols=58 Identities=19% Similarity=0.310 Sum_probs=47.7
Q ss_pred CCChHHHHHHHHHc------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhh
Q 009716 3 IVPKETIEVIAQSI------GVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTAND 60 (528)
Q Consensus 3 ~~~~e~V~~iAes~------Gi~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~D 60 (528)
-+|...||.+|... +-.+|+.++.++|-+..+.+.+|+..+---|+.|++|||+..+|
T Consensus 351 ~lP~~~vK~la~~~ak~s~~sK~kiskdal~aleqasdwfFeQl~dDL~aYA~HAgRKTIdesD 414 (414)
T PF15511_consen 351 SLPPGVVKKLAQHFAKSSGGSKMKISKDALEALEQASDWFFEQLGDDLEAYAKHAGRKTIDESD 414 (414)
T ss_dssp -S-HHHHHHHHHHHH-------S-B-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SEE-HHH
T ss_pred CCCccHHHHHHHHHHHhhcccCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCC
Confidence 37889999999888 45689999999999999999999999999999999999999887
No 33
>PF03847 TFIID_20kDa: Transcription initiation factor TFIID subunit A; InterPro: IPR003228 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription [].; GO: 0006352 transcription initiation, DNA-dependent, 0005669 transcription factor TFIID complex; PDB: 1H3O_B.
Probab=94.77 E-value=0.15 Score=41.90 Aligned_cols=62 Identities=21% Similarity=0.265 Sum_probs=48.5
Q ss_pred hHHHHHHHHHcCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhc
Q 009716 6 KETIEVIAQSIGVY-NLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (528)
Q Consensus 6 ~e~V~~iAes~Gi~-~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~ 67 (528)
+..+..+.++++-. .+++++...|.+-++..+..++..|.+.++|-+-.+|...||...|+-
T Consensus 2 K~~l~~Lv~~iDp~~~ld~~vee~Ll~laddFv~~v~~~ac~lAKhR~s~tle~~Dv~~~Ler 64 (68)
T PF03847_consen 2 KRKLQELVKQIDPNEKLDPDVEELLLELADDFVDDVVSFACRLAKHRKSSTLEVKDVQLHLER 64 (68)
T ss_dssp HHHHHHHHHCC-SS----HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SEE-HHHHHHHHHH
T ss_pred hHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHh
Confidence 34455566666443 589999999999999999999999999999999999999999999874
No 34
>KOG1142 consensus Transcription initiation factor TFIID, subunit TAF12 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=94.51 E-value=0.097 Score=53.17 Aligned_cols=71 Identities=25% Similarity=0.279 Sum_probs=60.7
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhc-cCCCCccCCCCCCCccceec
Q 009716 16 IGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL-RNVEPIYGFASGDSLRFKRA 87 (528)
Q Consensus 16 ~Gi~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~-~nvePlyGy~s~~pl~f~~~ 87 (528)
.|-+.|++||.+.|.+-.+.++..|+.-|.++++|-|..+|-+-||..+|+- .|++. -||++.+.-.|+++
T Consensus 168 d~~~~LD~dVedlLleiADdFV~sii~~sC~LAKHRKsdtlEvrDIqLhLEr~~Nm~i-Pgf~sd~~~~~~k~ 239 (258)
T KOG1142|consen 168 DGTTKLDDDVEDLLLEIADDFVSSIIHRSCKLAKHRKSDTVEVRDIQLHLERNFNMEI-PGFSSDEKRSKKKA 239 (258)
T ss_pred cCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhheeeeeeccccccC-CCcccccccccccc
Confidence 4566799999999999999999999999999999999999999999999987 68864 37777654445554
No 35
>COG5094 TAF9 Transcription initiation factor TFIID, subunit TAF9 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=94.31 E-value=0.1 Score=47.49 Aligned_cols=61 Identities=23% Similarity=0.383 Sum_probs=54.4
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCH---hhHHHHHhcc
Q 009716 8 TIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTA---NDVDSALNLR 68 (528)
Q Consensus 8 ~V~~iAes~Gi~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~---~DI~~AL~~~ 68 (528)
-|-.|..|+||...++.+-..|-+..--+-.+++++|.-|+.|++|...++ +||..|+..+
T Consensus 19 lihliL~Slgi~~ye~~VplQLl~FAhRYTq~vl~Dalvya~htgrg~~a~l~veDvrLA~at~ 82 (145)
T COG5094 19 LIHLILRSLGIEEYEPKVPLQLLEFAHRYTQDVLEDALVYAKHTGRGHIATLGVEDVRLALATK 82 (145)
T ss_pred HHHHHHHhcCchhhCccchHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHHHHHHH
Confidence 466789999999999999999998888889999999999999999986655 9999999764
No 36
>KOG4336 consensus TBP-associated transcription factor Prodos [Transcription]
Probab=93.42 E-value=0.22 Score=51.63 Aligned_cols=70 Identities=21% Similarity=0.271 Sum_probs=62.8
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhccCC--CCccCCC
Q 009716 8 TIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNV--EPIYGFA 77 (528)
Q Consensus 8 ~V~~iAes~Gi~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~~nv--ePlyGy~ 77 (528)
-|..+..+.|+..+++-+.+.|.+-+.-.|++|.+++..+..|++|+..|..||...|...|+ .-||-|-
T Consensus 10 VV~~Ll~~~gfd~is~~aletlvell~~yi~eigrq~~n~celagRT~pT~~Dv~l~Li~mnI~v~sL~~~~ 81 (323)
T KOG4336|consen 10 VVSNLLKTKGFDSISNAALETLVELLQSYIREIGRQLHNYCELAGRTIPTQGDVKLTLIEMNIKVSSLYAYF 81 (323)
T ss_pred HHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHhCCChhhhHHHH
Confidence 366778899999999999999999999999999999999999999999999999999999887 3455443
No 37
>smart00414 H2A Histone 2A.
Probab=93.12 E-value=0.29 Score=43.73 Aligned_cols=64 Identities=17% Similarity=0.226 Sum_probs=55.5
Q ss_pred CChHHHHHHHHHcC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhc
Q 009716 4 VPKETIEVIAQSIG-VYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (528)
Q Consensus 4 ~~~e~V~~iAes~G-i~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~ 67 (528)
||-.-|.++-+.-. ..+++..++-.||.-+||-..||++-|...++..|++++|+.||+.|++.
T Consensus 10 fPVgRi~r~Lk~~~~~~Rv~~~A~VyLaAvLEYLtaEILeLagn~a~~~k~~rItp~hi~lAi~n 74 (106)
T smart00414 10 FPVGRIHRLLRKGTYAKRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKRRITPRHLQLAIRN 74 (106)
T ss_pred CchHHHHHHHHcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHhhhccC
Confidence 56666666665542 45899999999999999999999999999999999999999999999865
No 38
>KOG2389 consensus Predicted bromodomain transcription factor [Transcription]
Probab=93.05 E-value=0.25 Score=52.12 Aligned_cols=67 Identities=19% Similarity=0.159 Sum_probs=62.4
Q ss_pred ChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhccCCC
Q 009716 5 PKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNVE 71 (528)
Q Consensus 5 ~~e~V~~iAes~Gi~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~~nve 71 (528)
-+..|.-|++++|...+.+-+...|...+..+|.++-..|-.|+.+.+|.--..-||-.||..+...
T Consensus 31 a~~avaQIcqslg~~~~~~sale~Ltd~~~qyvQ~lgk~a~~~~n~anR~epnl~Div~Al~dls~s 97 (353)
T KOG2389|consen 31 ARVAVAQICQSLGYSSTQNSALETLTDVLQQYVQNLGKTAHRYSNLANRTEPNLFDIVLALQDLSAS 97 (353)
T ss_pred HHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCccHHHHHHHHHHhhhh
Confidence 4567999999999999999999999999999999999999999999999999999999999997664
No 39
>KOG0870 consensus DNA polymerase epsilon, subunit D [Transcription]
Probab=92.77 E-value=0.43 Score=45.59 Aligned_cols=71 Identities=18% Similarity=0.211 Sum_probs=61.9
Q ss_pred CCChHHHHHHHHHcCCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhccCCCCc
Q 009716 3 IVPKETIEVIAQSIGVY---NLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNVEPI 73 (528)
Q Consensus 3 ~~~~e~V~~iAes~Gi~---~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~~nvePl 73 (528)
.+|.+.|.++++.+==+ .++.||..++++-..-++.-+.--|-.|++..+|++++++||=.||+-.+.+-+
T Consensus 10 ~lP~AiI~rlvke~l~E~~vsisKeA~~Ai~raAtVFv~~Lts~s~e~A~~q~rKt~sadDVl~aL~Eiefs~f 83 (172)
T KOG0870|consen 10 NLPNAIITRLVKEVLPESNVSISKEARLAIARAATVFVIFLTSVSNEIAKDQKRKTISADDVLKALDEIEFSSF 83 (172)
T ss_pred hccHHHHHHHHHHhCccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccHHHHHHHHHHhchHHH
Confidence 47999999888765322 488999999999999999999999999999999999999999999998765433
No 40
>PF04719 TAFII28: hTAFII28-like protein conserved region; InterPro: IPR006809 The general transcription factor, TFIID, consists of the TATA-binding protein (TBP) associated with a series of TBP-associated factors (TAFs) that together participate in the assembly of the transcription preinitiation complex. The conserved region is found at the C terminus of most member proteins. The crystal structure of hTAFII28 with hTAFII18 shows that this region is involved in the binding of these two subunits. The conserved region contains four alpha helices and three loops arranged as in histone H3 [, ].; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005634 nucleus; PDB: 1BH9_B 1BH8_B.
Probab=92.76 E-value=0.47 Score=41.23 Aligned_cols=66 Identities=23% Similarity=0.192 Sum_probs=48.6
Q ss_pred CCCChHHHHHHHHHcCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-ccCHhhHHHHHhc
Q 009716 2 SIVPKETIEVIAQSIGV-YNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRT-VLTANDVDSALNL 67 (528)
Q Consensus 2 s~~~~e~V~~iAes~Gi-~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~-~Lt~~DI~~AL~~ 67 (528)
|-+++..|+.+..++== ..+++.++..++.-....+-|||++|...+..-..+ -|++.|+..|.+-
T Consensus 22 s~~~k~~ikkli~~~~~~qsv~~~v~i~v~g~aKvFVGEiVE~A~~Vq~~~~~~~pl~P~hlreA~rr 89 (90)
T PF04719_consen 22 SSFNKAAIKKLINQVLGNQSVSQNVVIAVAGIAKVFVGEIVEEARDVQEEWGETGPLQPDHLREAYRR 89 (90)
T ss_dssp ----HHHHHHHHHHHHS-S---HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--SS--HHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHh
Confidence 45889999998877543 589999999999999999999999999999965544 7999999999864
No 41
>COG5262 HTA1 Histone H2A [Chromatin structure and dynamics]
Probab=92.47 E-value=0.27 Score=44.49 Aligned_cols=64 Identities=17% Similarity=0.252 Sum_probs=58.4
Q ss_pred CCChHHHHHHHH-HcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHh
Q 009716 3 IVPKETIEVIAQ-SIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALN 66 (528)
Q Consensus 3 ~~~~e~V~~iAe-s~Gi~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~ 66 (528)
.||.--|+++.+ .-+-.+++.+++-.|+..+||-+.||++-|...++--|.+++++-+++.|++
T Consensus 26 ~fpvgrvkr~lk~~~~~~Rig~~A~Vyl~AvleYL~aEilelAgNaA~d~kkkri~PrHlqlAIr 90 (132)
T COG5262 26 IFPVGRVKRLLKKGNYRMRIGAGAPVYLAAVLEYLAAEILELAGNAARDNKKKRIIPRHLQLAIR 90 (132)
T ss_pred cccHHHHHHHHHcCccceeecCCcHHHHHHHHHHHHHHHHHHhhhhhhhcCcceechHHHHHHhc
Confidence 577788888888 5566689999999999999999999999999999999999999999999985
No 42
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.39 E-value=2.2 Score=48.98 Aligned_cols=119 Identities=19% Similarity=0.330 Sum_probs=77.7
Q ss_pred HHHHHHHhhcCCCc--ccccchhhhHHHHHHHHhcccc-----CCC--------------------------C------C
Q 009716 233 LMRVARSLLRNPHI--HIEPYLHQMMPSVITCLVSKRL-----GNR--------------------------F------S 273 (528)
Q Consensus 233 llrmv~ALl~Np~L--~LepYLHqLlPsvLTCll~k~l-----~~~--------------------------~------~ 273 (528)
--.+-.|+..+|-. -+.|||.+|+|.++.-++.... .+. . .
T Consensus 276 ACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDd 355 (885)
T KOG2023|consen 276 ACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDD 355 (885)
T ss_pred HHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccc
Confidence 34556688899933 6799999999999987665421 100 0 0
Q ss_pred C----------CchHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhChhhhhhhcc
Q 009716 274 D----------NHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLIL 343 (528)
Q Consensus 274 ~----------~hw~LRd~AA~lL~~I~~kf~~~y~~L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~~aVr~lil 343 (528)
+ ..|.||..+|..|.-+.+-|+. .+-+-++=.|++.|.. .....+-.+|..|.|+-.- .-..++
T Consensus 356 ddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~---elL~~l~PlLk~~L~~--~~W~vrEagvLAlGAIAEG-cM~g~~ 429 (885)
T KOG2023|consen 356 DDDEDDDDDAFSDWNLRKCSAAALDVLANVFGD---ELLPILLPLLKEHLSS--EEWKVREAGVLALGAIAEG-CMQGFV 429 (885)
T ss_pred cccccccccccccccHhhccHHHHHHHHHhhHH---HHHHHHHHHHHHHcCc--chhhhhhhhHHHHHHHHHH-Hhhhcc
Confidence 1 2499999999999999999985 5777777777777763 3344444445555444222 233567
Q ss_pred cchHHHHHhhhhhh
Q 009716 344 PNLELYLKFLEPEM 357 (528)
Q Consensus 344 P~L~~y~~~Le~~l 357 (528)
|+|+.+...+-+-|
T Consensus 430 p~LpeLip~l~~~L 443 (885)
T KOG2023|consen 430 PHLPELIPFLLSLL 443 (885)
T ss_pred cchHHHHHHHHHHh
Confidence 88877666554443
No 43
>PLN00154 histone H2A; Provisional
Probab=92.20 E-value=0.48 Score=44.04 Aligned_cols=65 Identities=15% Similarity=0.099 Sum_probs=58.0
Q ss_pred CCChHHHHHHHHHcC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhc
Q 009716 3 IVPKETIEVIAQSIG--VYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (528)
Q Consensus 3 ~~~~e~V~~iAes~G--i~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~ 67 (528)
.||-.-|.++-+.-. ..+++..+.-.||.-+||-.-||++-|...++..|++++|+.||..|++.
T Consensus 38 ~FPVgRi~r~Lk~g~~~~~RVga~ApVYLAAVLEYLtAEVLELAGNaA~d~kk~RItPrHi~lAIrn 104 (136)
T PLN00154 38 QFPVGRIHRQLKQRVSAHGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRG 104 (136)
T ss_pred cCchHHHHHHHHhhhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhCCceecHHHhhhhccC
Confidence 367677777777754 56899999999999999999999999999999999999999999999865
No 44
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=91.63 E-value=0.4 Score=32.88 Aligned_cols=30 Identities=20% Similarity=0.431 Sum_probs=24.6
Q ss_pred hHHHHHHHHhccccCCCCCCCchHHHHHHHHHHHHHHHH
Q 009716 255 MMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTR 293 (528)
Q Consensus 255 LlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k 293 (528)
|+|.++.++ .|.+|..|+.|+..|+.|++.
T Consensus 1 llp~l~~~l---------~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLL---------NDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHH---------T-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHc---------CCCCHHHHHHHHHHHHHHHhh
Confidence 578887775 478999999999999999874
No 45
>smart00427 H2B Histone H2B.
Probab=91.50 E-value=0.53 Score=40.85 Aligned_cols=49 Identities=22% Similarity=0.270 Sum_probs=44.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhcc
Q 009716 20 NLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLR 68 (528)
Q Consensus 20 ~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~~ 68 (528)
.++..+...+..-|.+-...|..||.++++..||++||..+|..|.+..
T Consensus 19 giS~kam~imnSfvnDiferIa~EAs~L~~~nkr~TltsreIqtAvrl~ 67 (89)
T smart00427 19 GISSKAMSIMNSFVNDIFERIAAEASKLARYNKKSTLSSREIQTAVRLI 67 (89)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCCHHHHHHHHHHH
Confidence 3678888888899999999999999999999999999999999999874
No 46
>KOG1756 consensus Histone 2A [Chromatin structure and dynamics]
Probab=91.40 E-value=0.48 Score=43.45 Aligned_cols=64 Identities=20% Similarity=0.249 Sum_probs=55.8
Q ss_pred CCChHHHHHHHHH-cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHh
Q 009716 3 IVPKETIEVIAQS-IGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALN 66 (528)
Q Consensus 3 ~~~~e~V~~iAes-~Gi~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~ 66 (528)
.||.--|.++.+. -.+.+++-++.-.||.-+||-.-||++-|.++++-.+++++++.+|+.|++
T Consensus 27 ~fPvgri~r~Lr~~~~~~ri~~gapV~laavLeYL~Aeile~agnaardnkk~ri~PrH~~lAI~ 91 (131)
T KOG1756|consen 27 QFPVGRIHRLLRKGRYAQRVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRITPRHLQLAIR 91 (131)
T ss_pred ccCHHHHHHHHHccchhhhccCCChHHHHHHHHHHHHHHHHHhHHHhhhcCccccChHHHHHHHh
Confidence 4566666666665 556688889999999999999999999999999999999999999999995
No 47
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=91.31 E-value=10 Score=43.09 Aligned_cols=210 Identities=17% Similarity=0.168 Sum_probs=125.4
Q ss_pred CcHHHHHHHHHHHHHhhcCCChHHHHH---HHHHhhhcCCccccchhhHHHHHHHHhhhcCCHHH-HHHHHHHHHHhhc-
Q 009716 168 LSKELQLYFDKIRELTVSRSNSTVFKQ---ALLSLAMDSGLHPLVPYFTYFISEEVTRSLKNFSL-LFALMRVARSLLR- 242 (528)
Q Consensus 168 LSkElQ~Yf~kIt~a~l~~~~~~~r~~---AL~sL~tD~gL~qLLPYfv~FI~e~V~~nl~nl~~-L~~llrmv~ALl~- 242 (528)
.+.+...|+..+.+++-+......|+. |.+.+...-| ..-=||++.++-.-+++--+.... -......++|++.
T Consensus 168 ~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg-~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~ 246 (569)
T KOG1242|consen 168 ESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLG-PPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRC 246 (569)
T ss_pred hhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcC-CCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHh
Confidence 455667799999999865544433322 5577777766 566677777766544332111111 1123333333333
Q ss_pred -------------------------------------CCCcccccchhhhHHHHHHHHhccccCCCCCCCchHHHHHHHH
Q 009716 243 -------------------------------------NPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVAD 285 (528)
Q Consensus 243 -------------------------------------Np~L~LepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~ 285 (528)
=-...++.++..++|.+... ..|.|=.+|+-+-.
T Consensus 247 ~~~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsev---------l~DT~~evr~a~~~ 317 (569)
T KOG1242|consen 247 LSAYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEV---------LWDTKPEVRKAGIE 317 (569)
T ss_pred cCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHH---------HccCCHHHHHHHHH
Confidence 33333333344444422211 13668899999999
Q ss_pred HHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCC-Cch------------------------------------hhhhHHH
Q 009716 286 LIASICTRFGHVYQNLQSRVTRTLLHAFLDPTK-SLS------------------------------------QHYGAIQ 328 (528)
Q Consensus 286 lL~~I~~kf~~~y~~L~~RI~~tL~k~llDp~k-~l~------------------------------------t~YGAI~ 328 (528)
+|-.+|..-.+ +.| .++..+|+.++.||++ ... ++=+++.
T Consensus 318 ~l~~~~svidN--~dI-~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~ 394 (569)
T KOG1242|consen 318 TLLKFGSVIDN--PDI-QKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAI 394 (569)
T ss_pred HHHHHHHhhcc--HHH-HHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHH
Confidence 99999987665 444 4788999999999993 222 1222333
Q ss_pred HHHhhChhh-hhhhcccchHHHHHhhhhhhhhHhhhhhhhHHHHHHHHHHHHHhhhhhhhhccchh
Q 009716 329 GLAALGPSV-VHLLILPNLELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQCAAGLCVYDRLKTV 393 (528)
Q Consensus 329 GL~aLG~~a-Vr~lilP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~v~~all~a~g~~~~~~~~~~ 393 (528)
-.-.|-..+ =...+-|.|+.+...|+..+... ..-+|..|.|.+|+++..+|.-..+++.-.
T Consensus 395 IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~---~PEvR~vaarAL~~l~e~~g~~~f~d~~p~ 457 (569)
T KOG1242|consen 395 IIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDA---VPEVRAVAARALGALLERLGEVSFDDLIPE 457 (569)
T ss_pred HHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCC---ChhHHHHHHHHHHHHHHHHHhhcccccccH
Confidence 222222222 13345677777777777666432 345799999999999999998877665543
No 48
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=91.21 E-value=11 Score=40.88 Aligned_cols=192 Identities=18% Similarity=0.168 Sum_probs=111.4
Q ss_pred HHHHHhhhcCCc-cccchhhHHHHHHHHhhhcCCHHHHHHHHHHHHHhhc----CC-Ccccccchhh-hHHHHHHHHhcc
Q 009716 194 QALLSLAMDSGL-HPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLR----NP-HIHIEPYLHQ-MMPSVITCLVSK 266 (528)
Q Consensus 194 ~AL~sL~tD~gL-~qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~----Np-~L~LepYLHq-LlPsvLTCll~k 266 (528)
+||..+.+++.+ ..++|+++.-+.......- +......+++.+..++. +. +...+-|.|. ++|.++..++..
T Consensus 24 ~~l~~ls~~~~i~~~~~~~ll~kl~~~~~~~~-~~~~~~~il~tl~~~~~~~~~~~~~~~~~~y~~~~lv~~l~~~~~~~ 102 (415)
T PF12460_consen 24 EALAALSTSPQILETLSIRLLNKLSIVCQSES-SSDYCHAILSTLQSLLEKKQEDKQFEDNSWYFHRILVPRLFELALQA 102 (415)
T ss_pred HHHHHHHCChhHHHHHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHHHHhcccccccchHHHHHHhHHHHHHHHHHHhh
Confidence 466777777774 5566665555544332211 44444444444444433 34 6677899997 888888887776
Q ss_pred ccCCCCCCCchHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhc----------CCCCCchhhhhHHHHHHhhChh
Q 009716 267 RLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFL----------DPTKSLSQHYGAIQGLAALGPS 336 (528)
Q Consensus 267 ~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~~y~~L~~RI~~tL~k~ll----------Dp~k~l~t~YGAI~GL~aLG~~ 336 (528)
..+... .++.+=+.+++++..|++..+ ..-|..+...+...|+ +...........+.-+.++=.-
T Consensus 103 ~~~~~~--~~~~~L~~~~~l~~~iv~~l~---~~~q~~~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~ 177 (415)
T PF12460_consen 103 SDQSSD--LDDRVLELLSRLINLIVRSLS---PEKQQEILDELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCS 177 (415)
T ss_pred cccccc--cchHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHccccccCCCCccccccccccccHHHHHHHHHHc
Confidence 543321 567888999999999999877 5677888888888777 1110000111222212221111
Q ss_pred hhhhhcccchHHHHHhhhhhhhhHhhhhhhhHHHHHHHHHHHHHh--hhhhhhhccchh
Q 009716 337 VVHLLILPNLELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQCA--AGLCVYDRLKTV 393 (528)
Q Consensus 337 aVr~lilP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~v~~all~a--~g~~~~~~~~~~ 393 (528)
.=+.+.+|....+.+.+-..... ..+...|.-+.+...+|++= -|..+.+.+..+
T Consensus 178 l~~~~~~~~~~~ll~~l~~~~~~--~~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~ 234 (415)
T PF12460_consen 178 LRKDVSLPDLEELLQSLLNLALS--SEDEFSRLAALQLLASLVNKWPDDDDLDEFLDSL 234 (415)
T ss_pred CCcccCccCHHHHHHHHHHHHHc--CCChHHHHHHHHHHHHHHcCCCChhhHHHHHHHH
Confidence 23455677777777666555432 22355677788888888775 344444444444
No 49
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.61 E-value=1.4 Score=50.41 Aligned_cols=195 Identities=22% Similarity=0.249 Sum_probs=131.1
Q ss_pred HHHHHhhhcCCccccchhhHHHHHHHHhhhcCCHHHHHHHHHHHHHhhcCCCcccccchhhhHHHHHHHHhccccCCCCC
Q 009716 194 QALLSLAMDSGLHPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFS 273 (528)
Q Consensus 194 ~AL~sL~tD~gL~qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~Np~L~LepYLHqLlPsvLTCll~k~l~~~~~ 273 (528)
+||.-|++== =++++|-+.-++-+.+.+ .++..-..-+-.+-|+..-=.=.+-|||..|+|-++.|+=.|.---+ .
T Consensus 377 AaLDVLanvf-~~elL~~l~PlLk~~L~~--~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVR-s 452 (885)
T KOG2023|consen 377 AALDVLANVF-GDELLPILLPLLKEHLSS--EEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVR-S 452 (885)
T ss_pred HHHHHHHHhh-HHHHHHHHHHHHHHHcCc--chhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCcccee-e
Confidence 4555554322 267778877777776655 34443333333334444433336779999999999999977643222 3
Q ss_pred CCchHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhChhhhhhhcccchHHHHHhh
Q 009716 274 DNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLILPNLELYLKFL 353 (528)
Q Consensus 274 ~~hw~LRd~AA~lL~~I~~kf~~~y~~L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~~aVr~lilP~L~~y~~~L 353 (528)
-..|.|-+||--++..= .+.-++| ++.-|++.++|.+|-. +-.|..+++-|-.+|-.. ++|++..++..|
T Consensus 453 ITCWTLsRys~wv~~~~------~~~~f~p-vL~~ll~~llD~NK~V--QEAAcsAfAtleE~A~~e-LVp~l~~IL~~l 522 (885)
T KOG2023|consen 453 ITCWTLSRYSKWVVQDS------RDEYFKP-VLEGLLRRLLDSNKKV--QEAACSAFATLEEEAGEE-LVPYLEYILDQL 522 (885)
T ss_pred eeeeeHhhhhhhHhcCC------hHhhhHH-HHHHHHHHHhcccHHH--HHHHHHHHHHHHHhccch-hHHHHHHHHHHH
Confidence 56899999887765432 1223444 4444556667766644 457778888888888776 789999999999
Q ss_pred hhhhhhHhhhhhhhHHHHHHHHHHHHHhhhhhhhhccchhccCCCcchhhcc
Q 009716 354 EPEMLLEKQKNEMKRHEAWRVYGALQCAAGLCVYDRLKTVLLRPPKQSRWES 405 (528)
Q Consensus 354 e~~l~~~~~~~~~~r~ea~~v~~all~a~g~~~~~~~~~~~~~~~~~~~~~~ 405 (528)
......+..+|-.+-+||. |+|-..||.-+.+.--.-.+.||.-.-|.-
T Consensus 523 ~~af~kYQ~KNLlILYDAI---gtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~ 571 (885)
T KOG2023|consen 523 VFAFGKYQKKNLLILYDAI---GTLADSVGHALNKPAYIQILMPPLIEKWEL 571 (885)
T ss_pred HHHHHHHhhcceehHHHHH---HHHHHHHHHhcCcHHHHHHhccHHHHHHHh
Confidence 9888777667776666663 667777887788777666889999999973
No 50
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=90.48 E-value=0.19 Score=38.38 Aligned_cols=55 Identities=16% Similarity=0.113 Sum_probs=45.5
Q ss_pred hHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhh
Q 009716 277 WDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAAL 333 (528)
Q Consensus 277 w~LRd~AA~lL~~I~~kf~~~y~~L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~aL 333 (528)
|.+|.-|+..|+.++...+.......+.++..|...|.|++. ...-.|..+|..|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~--~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDD--SVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSH--HHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCH--HHHHHHHHHHhcC
Confidence 899999999999988776666677888999999999988665 6678888887654
No 51
>PTZ00017 histone H2A; Provisional
Probab=90.43 E-value=0.65 Score=43.14 Aligned_cols=64 Identities=14% Similarity=0.186 Sum_probs=54.0
Q ss_pred CChHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhc
Q 009716 4 VPKETIEVIAQSI-GVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (528)
Q Consensus 4 ~~~e~V~~iAes~-Gi~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~ 67 (528)
||-.=|.++...- -..+++..+.-.||.-+||-..||++-|...++..|++++|+.||+.|++.
T Consensus 28 FPVgRi~R~Lk~g~~a~RV~a~A~VYLAAVLEYLtaEILELAgNaa~d~kk~RItPrHi~lAI~n 92 (134)
T PTZ00017 28 FPVGRVHRYLKKGRYAKRVGAGAPVYLAAVLEYLTAEVLELAGNAAKDNKKKRITPRHIQLAIRN 92 (134)
T ss_pred cchHHHHHHHhccchhccccccchhhhHHHHHHHHHHHHHHHHHHHHhcCCCeecHHHHHhhccC
Confidence 5555566655442 345789999999999999999999999999999999999999999999854
No 52
>PTZ00463 histone H2B; Provisional
Probab=90.11 E-value=0.95 Score=41.04 Aligned_cols=48 Identities=17% Similarity=0.235 Sum_probs=44.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhcc
Q 009716 21 LSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLR 68 (528)
Q Consensus 21 Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~~ 68 (528)
+|..+...+...|..-...|..||.++++..+|.+||..||..|.++.
T Consensus 47 IS~kaM~ImnSfvnDifErIA~EAs~La~~nkr~TltsrEIQtAvrLl 94 (117)
T PTZ00463 47 ISRKSMNIMNSFLVDTFEKIATEASRLCKYTRRDTLSSREIQTAIRLV 94 (117)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHhhc
Confidence 578888889999999999999999999999999999999999999874
No 53
>PLN00158 histone H2B; Provisional
Probab=89.38 E-value=1.1 Score=40.67 Aligned_cols=48 Identities=21% Similarity=0.241 Sum_probs=44.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhcc
Q 009716 21 LSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLR 68 (528)
Q Consensus 21 Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~~ 68 (528)
++..+...+...|......|..||.++++..+|.+||..||..|.++.
T Consensus 46 IS~kaM~ImnSfvnDiferIA~EAs~La~~nkr~TltsrEIqtAvrLv 93 (116)
T PLN00158 46 ISSKAMSIMNSFINDIFEKIATEAGKLARYNKKPTVTSREIQTAVRLI 93 (116)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCCHHHHHHHHHHh
Confidence 577888888899999999999999999999999999999999999874
No 54
>PLN00156 histone H2AX; Provisional
Probab=89.18 E-value=0.62 Score=43.49 Aligned_cols=64 Identities=14% Similarity=0.188 Sum_probs=52.3
Q ss_pred CChHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhc
Q 009716 4 VPKETIEVIAQSI-GVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (528)
Q Consensus 4 ~~~e~V~~iAes~-Gi~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~ 67 (528)
||---|.++-..- -..+++..+.-.||.-+||-..||++-|..-++..|++++++.+|..|++.
T Consensus 30 FPVgRi~R~Lk~g~ya~RVga~ApVYLAAVLEYLtaEVLELAgNaa~d~kk~RItPrHi~lAIrn 94 (139)
T PLN00156 30 FPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRN 94 (139)
T ss_pred cchHHHHHHHhcCChhhccCCccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHhhccC
Confidence 4444444444332 234788899999999999999999999999999999999999999999854
No 55
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=89.11 E-value=17 Score=41.30 Aligned_cols=198 Identities=14% Similarity=0.079 Sum_probs=116.2
Q ss_pred HHHHHHHHhhcCCChH-HHH--HHHHHhhhcCCccccchhhHHHHHHHHhhhcCCHHHHHHHHHHHHHhhcCCCcccccc
Q 009716 175 YFDKIRELTVSRSNST-VFK--QALLSLAMDSGLHPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHIHIEPY 251 (528)
Q Consensus 175 Yf~kIt~a~l~~~~~~-~r~--~AL~sL~tD~gL~qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~Np~L~LepY 251 (528)
||.+.+.-+++...-. ++. -++..+-++.++..+-|+-+-=--..-..+.++...-...+....++..|=+-.-|||
T Consensus 134 ~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPy 213 (569)
T KOG1242|consen 134 YVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPY 213 (569)
T ss_pred HHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCch
Confidence 5555555555532222 222 2678999999999999985321111222222222222245566678888888899999
Q ss_pred hhhhHHHHHHHHhccccCCCCCCCchHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHH
Q 009716 252 LHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLA 331 (528)
Q Consensus 252 LHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~~y~~L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~ 331 (528)
+-.++|.+++|.=.+ .=.+|+-|......|.+.+.. ..++-.+...+...+.+ ...+.=+++-+|.
T Consensus 214 iv~~lp~il~~~~d~---------~~~Vr~Aa~~a~kai~~~~~~--~aVK~llpsll~~l~~~---kWrtK~aslellg 279 (569)
T KOG1242|consen 214 IVPILPSILTNFGDK---------INKVREAAVEAAKAIMRCLSA--YAVKLLLPSLLGSLLEA---KWRTKMASLELLG 279 (569)
T ss_pred HHhhHHHHHHHhhcc---------chhhhHHHHHHHHHHHHhcCc--chhhHhhhhhHHHHHHH---hhhhHHHHHHHHH
Confidence 999999999996222 227899999999989887765 45555555555444432 6677778888887
Q ss_pred hhCh---hhhhhh---cccchHHHHHhhhhhhhhHh------hhhhhhHHHHHHHHHHHHHhhhhhh
Q 009716 332 ALGP---SVVHLL---ILPNLELYLKFLEPEMLLEK------QKNEMKRHEAWRVYGALQCAAGLCV 386 (528)
Q Consensus 332 aLG~---~aVr~l---ilP~L~~y~~~Le~~l~~~~------~~~~~~r~ea~~v~~all~a~g~~~ 386 (528)
+|+. ..+..+ |+|-+...+-.=.++..... -..-..-.|..+.+--|+.+.+.+-
T Consensus 280 ~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~dp~ 346 (569)
T KOG1242|consen 280 AMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALADPS 346 (569)
T ss_pred HHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcCcc
Confidence 7754 344432 23333333222223322110 0111112367777777777776554
No 56
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.05 E-value=7 Score=47.14 Aligned_cols=208 Identities=15% Similarity=0.170 Sum_probs=125.4
Q ss_pred HHHHHHHHHhhcCCChHHHHHHHHHhhhcCCccccchhhHHHHHHHHhhhcCCHHH--HHHHHHHHHHhhcCCCcccccc
Q 009716 174 LYFDKIRELTVSRSNSTVFKQALLSLAMDSGLHPLVPYFTYFISEEVTRSLKNFSL--LFALMRVARSLLRNPHIHIEPY 251 (528)
Q Consensus 174 ~Yf~kIt~a~l~~~~~~~r~~AL~sL~tD~gL~qLLPYfv~FI~e~V~~nl~nl~~--L~~llrmv~ALl~Np~L~LepY 251 (528)
..|+.+...++..++. .|++|=+.|++..+=++++|-|.+..+..=....+.+.. +++++--.+ +.|. ..-
T Consensus 4 ~~l~qLl~~l~spDn~-vr~~Ae~~l~~~~~~~~~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w-----~~l~-~e~ 76 (1075)
T KOG2171|consen 4 APLEQLLQQLLSPDNE-VRRQAEEALETLAKTEPLLPALAHILATSADPQVRQLAAVLLRKLLTKHW-----SRLS-AEV 76 (1075)
T ss_pred hHHHHHHHHhcCCCch-HHHHHHHHHHHhhcccchHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHh-----hcCC-HHH
Confidence 3566666666665555 588999999999988889999987665422221111211 112211111 1111 122
Q ss_pred hhhhHHHHHHHHhccc-------cC-------CCC----------------CCCchHHHHHHHHHHHHHHHHhCCCchhH
Q 009716 252 LHQMMPSVITCLVSKR-------LG-------NRF----------------SDNHWDLRNFVADLIASICTRFGHVYQNL 301 (528)
Q Consensus 252 LHqLlPsvLTCll~k~-------l~-------~~~----------------~~~hw~LRd~AA~lL~~I~~kf~~~y~~L 301 (528)
-.+|-.++|.|++.-. +| ... ...+-.+|+-|=.||..+-..||+.....
T Consensus 77 ~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~ 156 (1075)
T KOG2171|consen 77 QQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPEKWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPH 156 (1075)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchh
Confidence 2456666666665521 11 000 12344899999999999999999987766
Q ss_pred HHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhCh-----hhhhhhcccchHHHHHhhhhhhhhHhhhhhhhHHHHHHHHH
Q 009716 302 QSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGP-----SVVHLLILPNLELYLKFLEPEMLLEKQKNEMKRHEAWRVYG 376 (528)
Q Consensus 302 ~~RI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~-----~aVr~lilP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~v~~ 376 (528)
-.-+.+.|.+.+.||..+ -+.-|+.++.++-. .+.+...-+-|+..+..+...+... +...-.++..+..
T Consensus 157 ~~~l~~lf~q~~~d~s~~--vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~---d~~~a~~~l~~l~ 231 (1075)
T KOG2171|consen 157 LDDLLRLFSQTMTDPSSP--VRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDG---DDDAAKSALEALI 231 (1075)
T ss_pred HHHHHHHHHHhccCCcch--HHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhcc---chHHHHHHHHHHH
Confidence 678999999999999988 55567777666533 2333334444444444444444321 1222246777777
Q ss_pred HHHHhhhhhhhhccchh
Q 009716 377 ALQCAAGLCVYDRLKTV 393 (528)
Q Consensus 377 all~a~g~~~~~~~~~~ 393 (528)
-|+.....++.+.+.-.
T Consensus 232 El~e~~pk~l~~~l~~i 248 (1075)
T KOG2171|consen 232 ELLESEPKLLRPHLSQI 248 (1075)
T ss_pred HHHhhchHHHHHHHHHH
Confidence 77888888887777655
No 57
>PLN00153 histone H2A; Provisional
Probab=89.02 E-value=0.59 Score=43.13 Aligned_cols=50 Identities=16% Similarity=0.255 Sum_probs=46.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhc
Q 009716 18 VYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (528)
Q Consensus 18 i~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~ 67 (528)
..+++..+.-.||.-+||-..||++-|..-++..|++++++.+|..|++.
T Consensus 40 a~Rvga~A~VYLAAVLEYLtaEVLELAgnaa~d~kk~RItPrHi~lAI~n 89 (129)
T PLN00153 40 AERIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKNRIVPRHIQLAIRN 89 (129)
T ss_pred hhccCCCchHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChHHHHhhccC
Confidence 34688889999999999999999999999999999999999999999854
No 58
>PLN00157 histone H2A; Provisional
Probab=88.41 E-value=0.97 Score=41.90 Aligned_cols=64 Identities=16% Similarity=0.208 Sum_probs=52.2
Q ss_pred CChHHHHHHHHH-cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhc
Q 009716 4 VPKETIEVIAQS-IGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (528)
Q Consensus 4 ~~~e~V~~iAes-~Gi~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~ 67 (528)
||--=|.+.-.. --..+++..+.-.||.-+||-..||++-|..-++..|++++++.||..|++.
T Consensus 27 FPVgRi~R~Lk~g~~a~RIg~~A~VYLAAVLEYLtaEVLELAgnaa~d~kk~RItPrHi~lAI~n 91 (132)
T PLN00157 27 FPVGRIARYLKAGKYATRVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKSRIVPRHIQLAVRN 91 (132)
T ss_pred cchHHHHHHHhcCchhhhcCCCcHhHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHhhcccC
Confidence 444444444443 1234788899999999999999999999999999999999999999999854
No 59
>KOG1745 consensus Histones H3 and H4 [Chromatin structure and dynamics]
Probab=87.97 E-value=0.3 Score=45.34 Aligned_cols=49 Identities=22% Similarity=0.355 Sum_probs=45.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhccC
Q 009716 21 LSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRN 69 (528)
Q Consensus 21 Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~~n 69 (528)
....|..+|-+.+|.+|-.+.+++..++.|+||-|+.+.||..|.+.++
T Consensus 86 fqs~Ai~ALQeA~EayLv~LfEdtnlcAihAkRVTimpkdiQlArrirg 134 (137)
T KOG1745|consen 86 FQSSAIAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 134 (137)
T ss_pred ehHHHHHHHHHHHHHHHHHhccccchhhhccceeEecccceehhhhccc
Confidence 4568899999999999999999999999999999999999999998765
No 60
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.33 E-value=5.3 Score=45.12 Aligned_cols=148 Identities=18% Similarity=0.284 Sum_probs=98.7
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHhhhcCCccccchhhHHHHHHHHhhhcCCHHHHHHHHHHHHHhhcCCCcccccchhhh
Q 009716 176 FDKIRELTVSRSNSTVFKQALLSLAMDSGLHPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHIHIEPYLHQM 255 (528)
Q Consensus 176 f~kIt~a~l~~~~~~~r~~AL~sL~tD~gL~qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~Np~L~LepYLHqL 255 (528)
.++++..++..++....++.++.|.+| |+. .-..|.+. ..|+-+.-++.||-.+. .+|+.++
T Consensus 24 lEk~Vk~l~~~~~~~~i~k~I~~L~~d------------~a~-s~~~n~rk-GgLiGlAA~~iaLg~~~----~~Y~~~i 85 (675)
T KOG0212|consen 24 LEKLVKDLVNNNDYDQIRKVISELAGD------------YAY-SPHANMRK-GGLIGLAAVAIALGIKD----AGYLEKI 85 (675)
T ss_pred HHHHHHHHHccCcHHHHHHHHHHHHHH------------hcc-Cccccccc-chHHHHHHHHHHhcccc----HHHHHHh
Confidence 355555666555555556666656555 111 11122222 44566666666665443 3499999
Q ss_pred HHHHHHHHhccccCCCCCCCchHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhCh
Q 009716 256 MPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGP 335 (528)
Q Consensus 256 lPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~~y~~L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~ 335 (528)
+|+|++|. .|..-.+|-||..-|-.|++-+......--.-|...+.|...|++.+ +.|-++|..
T Consensus 86 v~Pv~~cf---------~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~-------V~~~aeLLd 149 (675)
T KOG0212|consen 86 VPPVLNCF---------SDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQN-------VRGGAELLD 149 (675)
T ss_pred hHHHHHhc---------cCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccc-------cccHHHHHH
Confidence 99999995 24445889999999999999888888888889999999999988744 455667777
Q ss_pred hhhhhhcccc-----hHHHHHhhhhhh
Q 009716 336 SVVHLLILPN-----LELYLKFLEPEM 357 (528)
Q Consensus 336 ~aVr~lilP~-----L~~y~~~Le~~l 357 (528)
.-+...+.+. |+.+...|..++
T Consensus 150 RLikdIVte~~~tFsL~~~ipLL~eri 176 (675)
T KOG0212|consen 150 RLIKDIVTESASTFSLPEFIPLLRERI 176 (675)
T ss_pred HHHHHhccccccccCHHHHHHHHHHHH
Confidence 7777666654 355555555554
No 61
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=86.28 E-value=12 Score=44.78 Aligned_cols=141 Identities=19% Similarity=0.301 Sum_probs=93.6
Q ss_pred ccccchhhHHHHHHHHhhhc-----CCHHHHHHHHHHHHHhhcCCCcccccchhhhHHHHHHHHhccccCCCCCCCchHH
Q 009716 205 LHPLVPYFTYFISEEVTRSL-----KNFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDL 279 (528)
Q Consensus 205 L~qLLPYfv~FI~e~V~~nl-----~nl~~L~~llrmv~ALl~Np~L~LepYLHqLlPsvLTCll~k~l~~~~~~~hw~L 279 (528)
+|+++|-++.-+.-.|..+. ..+-.+..+.++++-|-.|-.+.-.||+|.++-+.+.-+-+ .+..-..
T Consensus 514 fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a-------~d~DqeV 586 (1233)
T KOG1824|consen 514 FHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKA-------TDSDQEV 586 (1233)
T ss_pred cccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhc-------ccccHHH
Confidence 57777777666666665543 12455566788888888888899999999766554444322 3556799
Q ss_pred HHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhChhhhhhh-------cccchHHHHHh
Q 009716 280 RNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLL-------ILPNLELYLKF 352 (528)
Q Consensus 280 Rd~AA~lL~~I~~kf~~~y~~L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~~aVr~l-------ilP~L~~y~~~ 352 (528)
|+.|-.++++++-.||....+=-+|++-.|.+-+. .-.|+--|+.+|.-+---..+.- ++|.+-.|+..
T Consensus 587 keraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~----nEiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK 662 (1233)
T KOG1824|consen 587 KERAISCMGQIIANFGDFLGNELPRTLPILLERLG----NEITRLTAVKALTLIAMSPLDIDLSPVLTEILPELASFLRK 662 (1233)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHh----chhHHHHHHHHHHHHHhccceeehhhhHHHHHHHHHHHHHH
Confidence 99999999999999998777777777777777765 44455566666655433333333 44444455444
Q ss_pred hhhh
Q 009716 353 LEPE 356 (528)
Q Consensus 353 Le~~ 356 (528)
....
T Consensus 663 ~~r~ 666 (1233)
T KOG1824|consen 663 NQRA 666 (1233)
T ss_pred HHHH
Confidence 4433
No 62
>PF02269 TFIID-18kDa: Transcription initiation factor IID, 18kD subunit; InterPro: IPR003195 This family includes the Spt3 yeast transcription factors and the 18 kDa subunit from human transcription initiation factor IID (TFIID-18). Determination of the crystal structure reveals an atypical histone fold [].; GO: 0006366 transcription from RNA polymerase II promoter; PDB: 1BH9_A 1BH8_A.
Probab=85.25 E-value=1 Score=39.19 Aligned_cols=49 Identities=14% Similarity=0.065 Sum_probs=23.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhc
Q 009716 19 YNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (528)
Q Consensus 19 ~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~ 67 (528)
.+-.+|.+..+-+-|...+.+++++|.+.+.+.+|++++++|+-.++|-
T Consensus 18 ~~P~~eTv~lvE~iv~~~i~~l~~~A~~~a~~rg~~~i~~eDl~F~lR~ 66 (93)
T PF02269_consen 18 EEPLPETVDLVEDIVREYIIELCQEAMEVAQRRGSKKIKVEDLLFLLRK 66 (93)
T ss_dssp SS--HHHHHHHHHHHHHHHHHHHHHHHC---------------------
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCcCcHHHHHHHHhc
Confidence 3566789999999999999999999999999999999999999999874
No 63
>PRK07452 DNA polymerase III subunit delta; Validated
Probab=85.15 E-value=2.4 Score=43.88 Aligned_cols=60 Identities=27% Similarity=0.325 Sum_probs=54.6
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCccCHhhHHHHHh
Q 009716 6 KETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRH--AHRTVLTANDVDSALN 66 (528)
Q Consensus 6 ~e~V~~iAes~Gi~~Lsdeaa~~La~dveyrlreIiqeA~kfm~h--skR~~Lt~~DI~~AL~ 66 (528)
..+|+..|+..|+ .+++++++.|++.+...+..+.+|.-|+.-. +++.++|.+||+..+.
T Consensus 136 ~~~i~~~~~~~g~-~i~~~a~~~L~~~~g~dl~~l~~EleKL~ly~~~~~~~It~~~V~~~v~ 197 (326)
T PRK07452 136 KQLVERTAQELGV-KLTPEAAELLAEAVGNDSRRLYNELEKLALYAENSTKPISAEEVKALVS 197 (326)
T ss_pred HHHHHHHHHHcCC-CCCHHHHHHHHHHhCccHHHHHHHHHHHHHhccCCCCccCHHHHHHHhc
Confidence 3678999999999 5999999999999999999999999999988 5688999999998774
No 64
>KOG0871 consensus Class 2 transcription repressor NC2, beta subunit (Dr1) [Transcription]
Probab=84.52 E-value=5.3 Score=37.73 Aligned_cols=67 Identities=13% Similarity=0.120 Sum_probs=58.5
Q ss_pred CChHHHHHHHHHcCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhccCC
Q 009716 4 VPKETIEVIAQSIGV--YNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNV 70 (528)
Q Consensus 4 ~~~e~V~~iAes~Gi--~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~~nv 70 (528)
+|++||.-|...+== -++..|+-..|-..--++|.-|-.+|-+.+....++|+.++||-.||+.++.
T Consensus 13 LPkAtv~KmIke~lP~d~rvakeareliincCvEFI~liSsEAneic~~e~KKTIa~EHV~KALe~LgF 81 (156)
T KOG0871|consen 13 LPKATVNKMIKEMLPKDVRVAKEARELIINCCVEFINLISSEANEICNKEAKKTIAPEHVIKALENLGF 81 (156)
T ss_pred CcHHHHHHHHHHhCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhHHhcccCCHHHHHHHHHHcch
Confidence 899999888776532 2577899998888888999999999999999999999999999999987653
No 65
>PF05236 TAF4: Transcription initiation factor TFIID component TAF4 family; InterPro: IPR007900 Accurate transcription initiation at protein-coding genes by RNA polymerase II requires the assembly of a multiprotein complex around the mRNA start site. Transcription factor TFIID is one of the general factors involved in this process. Yeast TFIID comprises the TATA binding protein and 14 TBP-associated factors (TAFIIs), nine of which contain histone-fold domains (IPR007124 from INTERPRO). The C-terminal region of the TFIID-specific yeast TAF4 (yTAF4) containing the HFD shares strong sequence similarity with Drosophila (d)TAF4 and human TAF4. A structure/function analysis of yTAF4 demonstrates that the HFD, a short conserved C-terminal domain (CCTD), and the region separating them are all required for yTAF4 function. This region of similarity is found in Transcription initiation factor TFIID component TAF4 []. ; GO: 0006352 transcription initiation, DNA-dependent, 0005669 transcription factor TFIID complex; PDB: 1H3O_C.
Probab=83.61 E-value=1 Score=45.93 Aligned_cols=63 Identities=27% Similarity=0.372 Sum_probs=34.0
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc------CHhhHHHHHhccC
Q 009716 7 ETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVL------TANDVDSALNLRN 69 (528)
Q Consensus 7 e~V~~iAes~Gi~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~L------t~~DI~~AL~~~n 69 (528)
..|..|+...|+..+++|+...|+.-+|.|||.||..++..++|-.+.-- ..+||...|+.++
T Consensus 51 ~~i~~i~~~~g~~~~~~d~l~llS~A~e~rLr~lie~~~~~s~hR~~~~~~~~~~~~~sdv~~qlr~l~ 119 (264)
T PF05236_consen 51 KRIQKIAKKHGLKSVDEDVLELLSLATEERLRNLIEKAIVLSRHRRDSSKSDPRYEIRSDVRKQLRFLE 119 (264)
T ss_dssp HHHHHHHHCTT--EE-TCHHHHHHHHHHHHHHHHHHHHH------------------------------
T ss_pred HHHHHHHHHcCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcccccchHHHHHHHHHH
Confidence 46788999999989999999999999999999999999999999766533 3667776666654
No 66
>cd08045 TAF4 TATA Binding Protein (TBP) Associated Factor 4 (TAF4) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 4 (TAF4) is one of several TAFs that bind TBP and are involved in forming the Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryote. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAF orthologs and paralogs. Several hypotheses are
Probab=83.06 E-value=4.1 Score=40.28 Aligned_cols=48 Identities=23% Similarity=0.359 Sum_probs=44.1
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 009716 6 KETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHR 53 (528)
Q Consensus 6 ~e~V~~iAes~Gi~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR 53 (528)
...|..|+..-|+..+++|+...|+..++.||+.|++..+.+.+|-..
T Consensus 51 ~~~~~~i~~~~g~~~~~~d~~~lis~a~e~rlr~li~k~~~~s~hR~~ 98 (212)
T cd08045 51 AKKIRKIAKKHGLKEVDEDVLDLISLALEERLRNLLEKLIEVSEHRVD 98 (212)
T ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 356889999999999999999999999999999999999999999744
No 67
>cd07978 TAF13 The TATA Binding Protein (TBP) Associated Factor 13 (TAF13) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 13 (TAF13) is one of several TAFs that bind TBP and is involved in forming the Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAFs orthologs and paralogs. Several hy
Probab=82.35 E-value=8.3 Score=33.58 Aligned_cols=58 Identities=17% Similarity=0.110 Sum_probs=49.1
Q ss_pred HHHHHHHcCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhc
Q 009716 9 IEVIAQSIGVY-NLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (528)
Q Consensus 9 V~~iAes~Gi~-~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~ 67 (528)
|+.+.=..|=. +-.+|.+..|-+-|...+.+++.+|..++. ++|.+++++|+-.++|-
T Consensus 8 i~~mmy~~GD~~~P~~eTv~llE~iv~~~i~~l~~~a~~~A~-~r~~k~~~eD~~FliR~ 66 (92)
T cd07978 8 IRQMMYGFGDVQNPLPETVDLLEDIVVEYIIELCHKAAEVAQ-RRRGKVKVEDLIFLLRK 66 (92)
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCCCCHHHHHHHHhc
Confidence 66666666654 445688999999999999999999999999 88899999999999863
No 68
>PTZ00252 histone H2A; Provisional
Probab=82.01 E-value=4.3 Score=37.77 Aligned_cols=49 Identities=20% Similarity=0.269 Sum_probs=44.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCccCHhhHHHHHhc
Q 009716 19 YNLSSDVALALAPDVEYRVREIMQEAIKCMRH--AHRTVLTANDVDSALNL 67 (528)
Q Consensus 19 ~~Lsdeaa~~La~dveyrlreIiqeA~kfm~h--skR~~Lt~~DI~~AL~~ 67 (528)
.+++..++-.||.-+||-..||++-|.+-++. .|++++++.+|..|++.
T Consensus 42 ~RIga~ApVYLAAVLEYLtaEVLELAgnaa~d~~~kk~RItPrHi~lAIrN 92 (134)
T PTZ00252 42 RRIGASGAVYMAAVLEYLTAELLELSVKAAAQQAKKPKRLTPRTVTLAVRH 92 (134)
T ss_pred cccCCccHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccHHHHHhhccC
Confidence 47888999999999999999999999999976 68899999999999854
No 69
>PRK06585 holA DNA polymerase III subunit delta; Reviewed
Probab=81.97 E-value=3.3 Score=43.20 Aligned_cols=60 Identities=18% Similarity=0.123 Sum_probs=53.6
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCccCHhhHHHHHhc
Q 009716 7 ETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAH-RTVLTANDVDSALNL 67 (528)
Q Consensus 7 e~V~~iAes~Gi~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hsk-R~~Lt~~DI~~AL~~ 67 (528)
.+|+..|+..|+ .+++++++.|++.+...+..+.+|--|+.--+. .+++|.+||+..+-.
T Consensus 149 ~~i~~~~~~~g~-~i~~~a~~~L~~~~g~dl~~l~~EleKL~ly~~~~~~It~edV~~lv~~ 209 (343)
T PRK06585 149 RLIDDELAEAGL-RITPDARALLVALLGGDRLASRNEIEKLALYAHGKGEITLDDVRAVVGD 209 (343)
T ss_pred HHHHHHHHHCCC-CCCHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHhCC
Confidence 568999999999 599999999999999999999999999998754 568999999988733
No 70
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal
Probab=81.95 E-value=16 Score=39.55 Aligned_cols=137 Identities=17% Similarity=0.258 Sum_probs=90.1
Q ss_pred hHHHHHHHHhhhc----C--CHHHHHHHHHHHHHhhcC----CCcccccchhhhHHHHHHHHhccccCCCCCCCchHHHH
Q 009716 212 FTYFISEEVTRSL----K--NFSLLFALMRVARSLLRN----PHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRN 281 (528)
Q Consensus 212 fv~FI~e~V~~nl----~--nl~~L~~llrmv~ALl~N----p~L~LepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd 281 (528)
|.+||-+.+..|. . --+.+..++.++.-|+.. +.=.+.--+..++|++|-|++- .+++-..|.
T Consensus 204 l~~~il~~i~~~fl~~~~~~p~p~l~~vL~fl~~Ll~~~~~~~~~~~~~~~~~~lp~lL~c~~~-------v~e~~~~k~ 276 (373)
T PF14911_consen 204 LRKFILQVIRSNFLEFKGSAPPPRLASVLAFLQQLLKRLQRQNENQILTLLRLVLPSLLECLML-------VNEEPQVKK 276 (373)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHhcCcccchhHHHHHHHhhHHHHHHHhh-------cCCCcchhH
Confidence 4566666666653 1 124455666666667766 4445555567789999999875 245668899
Q ss_pred HHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHhcCCC-CCchhhhhHHHHHHhhChhhhhhhcccchHHHHHhhhhh
Q 009716 282 FVADLIASICTRFG-HVYQNLQSRVTRTLLHAFLDPT-KSLSQHYGAIQGLAALGPSVVHLLILPNLELYLKFLEPE 356 (528)
Q Consensus 282 ~AA~lL~~I~~kf~-~~y~~L~~RI~~tL~k~llDp~-k~l~t~YGAI~GL~aLG~~aVr~lilP~L~~y~~~Le~~ 356 (528)
.|-.++..|++... .+....+..++..+.....+-. ..-...|+-+.-++.+-++.|.. ++|.+..-...-|..
T Consensus 277 ~a~e~l~~mv~~~~~~~~~~~~~~l~s~lrsfvqk~l~~~t~~~f~~l~~vA~l~p~lV~~-Lip~i~q~l~~~E~k 352 (373)
T PF14911_consen 277 LATELLQYMVESCQVGSSGEPREQLTSVLRSFVQKYLAHYTYQYFQFLEKVAELDPQLVIS-LIPTIRQSLKDSERK 352 (373)
T ss_pred HHHHHHHHHHHcccccCcchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhCHHHHHH-HHHHHHHHHHHHHHH
Confidence 99999999998665 4445555555555544332111 12234678888899999999997 678887766555443
No 71
>PRK05574 holA DNA polymerase III subunit delta; Reviewed
Probab=81.88 E-value=3.8 Score=42.24 Aligned_cols=60 Identities=22% Similarity=0.150 Sum_probs=52.5
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhc
Q 009716 7 ETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (528)
Q Consensus 7 e~V~~iAes~Gi~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~ 67 (528)
..|+..+++.|+ ++++++++.|++.+...+..+.+|.-|+.--++-+++|.+||+..+..
T Consensus 153 ~~i~~~~~~~g~-~i~~~a~~~L~~~~~~d~~~l~~El~KL~l~~~~~~It~~~I~~~i~~ 212 (340)
T PRK05574 153 QWIQQRLKQQGL-QIDAAALQLLAERVEGNLLALAQELEKLALLYPDGKITLEDVEEAVPD 212 (340)
T ss_pred HHHHHHHHHcCC-CCCHHHHHHHHHHhCchHHHHHHHHHHHHhhcCCCCCCHHHHHHHHhh
Confidence 568889999999 699999999999999999999999999987764334999999998743
No 72
>TIGR01128 holA DNA polymerase III, delta subunit. subunit around DNA forming a DNA sliding clamp.
Probab=81.88 E-value=3.9 Score=41.30 Aligned_cols=60 Identities=27% Similarity=0.226 Sum_probs=53.4
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhc
Q 009716 7 ETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (528)
Q Consensus 7 e~V~~iAes~Gi~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~ 67 (528)
..|+..++..|+ ++++++++.|++.+...++.+.++.-|+.--++.+.+|.+||+..+..
T Consensus 118 ~~i~~~~~~~g~-~i~~~a~~~l~~~~~~d~~~l~~el~KL~~~~~~~~It~e~I~~~~~~ 177 (302)
T TIGR01128 118 RWIQARLKKLGL-RIDPDAVQLLAELVEGNLLAIAQELEKLALYAPDGKITLEDVEEAVSD 177 (302)
T ss_pred HHHHHHHHHcCC-CCCHHHHHHHHHHhCcHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHhh
Confidence 368889999999 699999999999999999999999999988876668999999998843
No 73
>PF09415 CENP-X: CENP-S associating Centromere protein X; InterPro: IPR018552 Centromere protein X (CENP-X) is a component of the CENP-S complex. The CENP-S complex is composed of at least of CENP-S and CENP-X and is essential for the stable assembly of the outer kinetchore []. CENP-X is also a DNA-binding component of the Fanconi anemia (FA) core complex involved in DNA damage repair and genome maintenance. The FA complex is composed of CENPS, FANCA, FANCB, FANCC, FANCE, FANCF, FANCG, FANCL/PHF9, FANCM, FAAP24 and CENPX. Interacts with CENPS, FANCM and FAAP24 [, ].; PDB: 4DRB_L 4DRA_H 3V9R_D.
Probab=81.28 E-value=2.1 Score=35.70 Aligned_cols=61 Identities=20% Similarity=0.159 Sum_probs=49.5
Q ss_pred ChHHHHHHHHHcCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-cCHhhHHHHHh
Q 009716 5 PKETIEVIAQSIGV----YNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTV-LTANDVDSALN 66 (528)
Q Consensus 5 ~~e~V~~iAes~Gi----~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~-Lt~~DI~~AL~ 66 (528)
|+++|.++-. ... ++++.|+.+..++.++-.++|.+.-|..-++..+... +..+|++..+-
T Consensus 1 p~~li~rll~-~~f~~~~tkIs~dal~l~~eyl~iFV~EAv~Ra~~~a~~e~~~~~le~e~LEki~p 66 (72)
T PF09415_consen 1 PPELIARLLH-EHFKDDKTKISKDALKLSAEYLRIFVREAVARAAEQAEAEGDEGFLEVEHLEKILP 66 (72)
T ss_dssp -CHHHHHHHC-TTSSSTT-EE-CCCHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSEE-HHHHHHHCH
T ss_pred ChHHHHHHHH-HHhcCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 6788888877 444 3688999999999999999999999999999999998 99999998764
No 74
>COG1466 HolA DNA polymerase III, delta subunit [DNA replication, recombination, and repair]
Probab=80.72 E-value=4.4 Score=42.59 Aligned_cols=58 Identities=21% Similarity=0.212 Sum_probs=55.3
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHH
Q 009716 7 ETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSAL 65 (528)
Q Consensus 7 e~V~~iAes~Gi~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL 65 (528)
..|+..+.+.|+ +++++|++.|++.++..+..+.+|--|+.--+.-+.+|.+||+.++
T Consensus 147 ~~i~~~~~~~~l-~i~~~a~~~L~~~~~~nl~~i~~Ei~KL~l~~~~~~I~~~~V~~~v 204 (334)
T COG1466 147 QWIKKRAKELGL-KIDQEAIQLLLEALGGNLLAIAQEIEKLALYAGDKEITLEDVEEVV 204 (334)
T ss_pred HHHHHHHHHcCC-CCCHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCCcCCHHHHHHHH
Confidence 578999999999 7999999999999999999999999999999988899999999988
No 75
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=80.31 E-value=7.1 Score=32.87 Aligned_cols=94 Identities=9% Similarity=0.046 Sum_probs=58.8
Q ss_pred cchhhHHHHHHHHhhhcCCHHHHHHHHHHHHHhhcCCCcccccchh-hhHHHHHHHHhccccCCCCCCCchHHHHHHHHH
Q 009716 208 LVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHIHIEPYLH-QMMPSVITCLVSKRLGNRFSDNHWDLRNFVADL 286 (528)
Q Consensus 208 LLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~Np~L~LepYLH-qLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~l 286 (528)
++|+++.++.+. +.......+..+..+..+..-....++. ..+|.++.++- +++..+|..|+.+
T Consensus 8 ~i~~l~~~l~~~------~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~---------~~~~~v~~~a~~~ 72 (120)
T cd00020 8 GLPALVSLLSSS------DENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLK---------SEDEEVVKAALWA 72 (120)
T ss_pred ChHHHHHHHHcC------CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHh---------CCCHHHHHHHHHH
Confidence 566666666433 3555666677777787774333334443 78888888863 2456999999999
Q ss_pred HHHHHHHhCCCchh-HHHHHHHHHHHHhcCC
Q 009716 287 IASICTRFGHVYQN-LQSRVTRTLLHAFLDP 316 (528)
Q Consensus 287 L~~I~~kf~~~y~~-L~~RI~~tL~k~llDp 316 (528)
|..|+......-.- .+..++..+.+.+.++
T Consensus 73 L~~l~~~~~~~~~~~~~~g~l~~l~~~l~~~ 103 (120)
T cd00020 73 LRNLAAGPEDNKLIVLEAGGVPKLVNLLDSS 103 (120)
T ss_pred HHHHccCcHHHHHHHHHCCChHHHHHHHhcC
Confidence 99999754321111 1122566677776654
No 76
>KOG3423 consensus Transcription initiation factor TFIID, subunit TAF10 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=78.98 E-value=10 Score=36.51 Aligned_cols=68 Identities=16% Similarity=0.228 Sum_probs=57.2
Q ss_pred CCChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------CCccCHhhHHHHHhcc
Q 009716 3 IVPKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAH--------------RTVLTANDVDSALNLR 68 (528)
Q Consensus 3 ~~~~e~V~~iAes~Gi~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hsk--------------R~~Lt~~DI~~AL~~~ 68 (528)
.||-+-+.-+.++.|+.-.+.-+.+.++--...++..|+++|.++.|--. +-+||.+|+..||+..
T Consensus 86 ~IPDavt~~yL~~aGf~~~D~rv~RLvsLaAQKfvSDIa~DA~Q~~k~r~~~~~~~~k~~~kdkK~tLtmeDL~~AL~Ey 165 (176)
T KOG3423|consen 86 TIPDAVTDHYLKKAGFQTSDPRVKRLVSLAAQKFVSDIANDALQHSKIRTKTAIGKDKKQAKDKKYTLTMEDLSPALAEY 165 (176)
T ss_pred CCcHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccceeeeHHHHHHHHHHh
Confidence 46778888899999998777799999999999999999999998876432 3379999999999885
Q ss_pred CC
Q 009716 69 NV 70 (528)
Q Consensus 69 nv 70 (528)
++
T Consensus 166 Gi 167 (176)
T KOG3423|consen 166 GI 167 (176)
T ss_pred Cc
Confidence 54
No 77
>KOG3219 consensus Transcription initiation factor TFIID, subunit TAF11 [Transcription]
Probab=78.69 E-value=2.7 Score=41.29 Aligned_cols=70 Identities=24% Similarity=0.276 Sum_probs=61.7
Q ss_pred CCCChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CccCHhhHHHHHhccCCC
Q 009716 2 SIVPKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHR-TVLTANDVDSALNLRNVE 71 (528)
Q Consensus 2 s~~~~e~V~~iAes~Gi~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR-~~Lt~~DI~~AL~~~nve 71 (528)
|-||+..|+..+.++-=..+++.++.+++.-..-++-|||++|...|..-+- .-|.+.||..|.+.+..+
T Consensus 111 s~f~Ka~iKkL~~~itg~~v~~nv~Ia~~GiaKvFVGEvVEeAl~V~~~~~e~~PLqP~HIREA~rrL~~q 181 (195)
T KOG3219|consen 111 SAFPKAQIKKLMSSITGQSVSENVAIAMAGIAKVFVGEVVEEALDVREEWGESGPLQPKHIREAYRRLKLQ 181 (195)
T ss_pred hcCCHHHHHHHHHHHhCCccCcceeeeecchhhHhHHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHhc
Confidence 4689999999999887777999999999999999999999999999976554 369999999999987654
No 78
>PRK07914 hypothetical protein; Reviewed
Probab=78.65 E-value=4.6 Score=42.02 Aligned_cols=59 Identities=17% Similarity=0.180 Sum_probs=51.6
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHh
Q 009716 6 KETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALN 66 (528)
Q Consensus 6 ~e~V~~iAes~Gi~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~ 66 (528)
..+|+..|++.|+ .++.++++.|++-++..+..+.+|.-|..-..+ .++|.+||+..+.
T Consensus 134 ~~wi~~~a~~~g~-~i~~~A~~~L~~~~g~dl~~l~~EleKL~~~~~-~~It~e~V~~~v~ 192 (320)
T PRK07914 134 ADFVRKEFRSLRV-KVDDDTVTALLDAVGSDLRELASACSQLVADTG-GAVDAAAVRRYHS 192 (320)
T ss_pred HHHHHHHHHHcCC-CCCHHHHHHHHHHHCccHHHHHHHHHHHhcCCC-CCcCHHHHHHHcC
Confidence 4579999999999 599999999999999999999999999875544 5799999998774
No 79
>PRK05629 hypothetical protein; Validated
Probab=78.10 E-value=5.8 Score=41.18 Aligned_cols=57 Identities=19% Similarity=0.193 Sum_probs=50.9
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHH
Q 009716 7 ETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSAL 65 (528)
Q Consensus 7 e~V~~iAes~Gi~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL 65 (528)
.+|+..|++.|+ .+++++++.|++.+...+..+-+|--|..-.. ..++|.+||+..+
T Consensus 133 ~wi~~~~~~~g~-~i~~~A~~~L~~~~g~dl~~l~~EleKL~~~~-~~~It~e~V~~~v 189 (318)
T PRK05629 133 GWVTQEFKNHGV-RPTPDVVHALLEGVGSDLRELASAISQLVEDT-QGNVTVEKVRAYY 189 (318)
T ss_pred HHHHHHHHHcCC-CCCHHHHHHHHHHHCccHHHHHHHHHHHHhcC-CCCcCHHHHHHHh
Confidence 579999999999 59999999999999999999999999987665 4579999998765
No 80
>PRK05907 hypothetical protein; Provisional
Probab=77.56 E-value=5.3 Score=41.91 Aligned_cols=60 Identities=20% Similarity=0.254 Sum_probs=54.6
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-hCCCccCHhhHHHHHh
Q 009716 6 KETIEVIAQSIGVYNLSSDVALALAPDV-EYRVREIMQEAIKCMRH-AHRTVLTANDVDSALN 66 (528)
Q Consensus 6 ~e~V~~iAes~Gi~~Lsdeaa~~La~dv-eyrlreIiqeA~kfm~h-skR~~Lt~~DI~~AL~ 66 (528)
..+|...++..|. .++.++++.|++.+ +..+..+.+|--|.+-. +.++++|.+||+..+.
T Consensus 140 ~~Wi~~~~~~~g~-~i~~~a~~~L~~~~~~~nL~~l~~EleKL~ly~g~~~~It~e~V~~lv~ 201 (311)
T PRK05907 140 AQLLIQRAKELGI-SCSLGLASLFVSKFPQTGLFEILSEFQKLLCQMGKKESLEASDIQSFVV 201 (311)
T ss_pred HHHHHHHHHHcCC-CcCHHHHHHHHHHccCCCHHHHHHHHHHHHHhcCCCCeECHHHHHHHhc
Confidence 4689999999999 69999999999999 69999999999999998 6688999999998763
No 81
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=77.38 E-value=18 Score=30.31 Aligned_cols=70 Identities=13% Similarity=0.186 Sum_probs=49.7
Q ss_pred ccchhhHHHHHHHHhhhcCCHHHHHHHHHHHHHhhcCCCcccccch-hhhHHHHHHHHhccccCCCCCCCchHHHHHHHH
Q 009716 207 PLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHIHIEPYL-HQMMPSVITCLVSKRLGNRFSDNHWDLRNFVAD 285 (528)
Q Consensus 207 qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~Np~L~LepYL-HqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~ 285 (528)
..+|.++.++.+ +|.......+.....|..++.-..+.+. +.++|.++.++- +.+...|+.|..
T Consensus 49 ~~i~~l~~~l~~------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~l~~~l~---------~~~~~~~~~a~~ 113 (120)
T cd00020 49 GGLPALVQLLKS------EDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLD---------SSNEDIQKNATG 113 (120)
T ss_pred CChHHHHHHHhC------CCHHHHHHHHHHHHHHccCcHHHHHHHHHCCChHHHHHHHh---------cCCHHHHHHHHH
Confidence 556666666553 3566667778888888888765444444 457888887752 336799999999
Q ss_pred HHHHHH
Q 009716 286 LIASIC 291 (528)
Q Consensus 286 lL~~I~ 291 (528)
+|..||
T Consensus 114 ~l~~l~ 119 (120)
T cd00020 114 ALSNLA 119 (120)
T ss_pred HHHHhh
Confidence 999887
No 82
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=77.29 E-value=33 Score=41.66 Aligned_cols=195 Identities=16% Similarity=0.143 Sum_probs=123.0
Q ss_pred HHHHHHhhhcCCccccchhhHHHHHHHHhhhcCCHHHHHHHHHHHHHhhcCCCcccccchhhhHHHHHHHHhccccCCCC
Q 009716 193 KQALLSLAMDSGLHPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRF 272 (528)
Q Consensus 193 ~~AL~sL~tD~gL~qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~Np~L~LepYLHqLlPsvLTCll~k~l~~~~ 272 (528)
.+||.-|+..=|=.+++|-+..++..-+++ .++..-...|..+-++..=-+=.++.-|.+++|.|+..+
T Consensus 330 ~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S--~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l--------- 398 (1075)
T KOG2171|consen 330 EQALDRLALHLGGKQVLPPLFEALEAMLQS--TEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGL--------- 398 (1075)
T ss_pred HHHHHHHHhcCChhhehHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhc---------
Confidence 358888888888788888888888766655 366666666666666666655566666666666555442
Q ss_pred CCCchHHHHHHHHHHHHHHHHhCCCchh-HHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhChhhhhhhcccchHHHHH
Q 009716 273 SDNHWDLRNFVADLIASICTRFGHVYQN-LQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLILPNLELYLK 351 (528)
Q Consensus 273 ~~~hw~LRd~AA~lL~~I~~kf~~~y~~-L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~~aVr~lilP~L~~y~~ 351 (528)
.|.|=..|--|-+.++++..-|...... =..|+.--|.-.+ |.......+--|-.+|.++--+.-...|-|.|+.+++
T Consensus 399 ~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~l-d~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~ 477 (1075)
T KOG2171|consen 399 NDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALL-DSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLME 477 (1075)
T ss_pred CCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHh-cccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 5779999999999999988766532211 1123333444443 3344444444455666777667777778899999888
Q ss_pred hhhhhhhhHhhhhhhhHHHHHHHHHHHHHhhhhhhhhccchh-ccCCCcchhhc
Q 009716 352 FLEPEMLLEKQKNEMKRHEAWRVYGALQCAAGLCVYDRLKTV-LLRPPKQSRWE 404 (528)
Q Consensus 352 ~Le~~l~~~~~~~~~~r~ea~~v~~all~a~g~~~~~~~~~~-~~~~~~~~~~~ 404 (528)
..-..+. +..++..-+.|..||=.++..+-....+-| .+.|-......
T Consensus 478 ~~l~~L~-----~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~ 526 (1075)
T KOG2171|consen 478 KKLLLLL-----QSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQ 526 (1075)
T ss_pred HHHHHHh-----cCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHh
Confidence 5333332 122334456777787777777776666666 33444444333
No 83
>PRK08487 DNA polymerase III subunit delta; Validated
Probab=77.06 E-value=7.1 Score=40.83 Aligned_cols=57 Identities=14% Similarity=0.093 Sum_probs=52.1
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHH
Q 009716 6 KETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSAL 65 (528)
Q Consensus 6 ~e~V~~iAes~Gi~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL 65 (528)
..+|+..|+..|+ .+++++++.|++-+...+..+.+|--|+.--++ ++|.+||+..+
T Consensus 141 ~~~i~~~~~~~g~-~i~~~a~~~L~~~~g~dl~~l~~ELeKL~ly~~--~It~edV~~~v 197 (328)
T PRK08487 141 LELLQERAKELGL-DIDQNALNHLYFIHNEDLALAANELEKLAILNE--PITLKDIQELV 197 (328)
T ss_pred HHHHHHHHHHhCC-CCCHHHHHHHHHHhCcHHHHHHHHHHHHHHhcC--CCCHHHHHHHh
Confidence 3579999999999 599999999999999999999999999988865 69999999976
No 84
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=76.83 E-value=17 Score=35.41 Aligned_cols=139 Identities=20% Similarity=0.233 Sum_probs=86.1
Q ss_pred HHHHHHHhhcC-CCcccccchhhhHHHH-----------HHHHhccccCCCCCCCchHHHHHHHHHHHHHHHH-------
Q 009716 233 LMRVARSLLRN-PHIHIEPYLHQMMPSV-----------ITCLVSKRLGNRFSDNHWDLRNFVADLIASICTR------- 293 (528)
Q Consensus 233 llrmv~ALl~N-p~L~LepYLHqLlPsv-----------LTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k------- 293 (528)
-+.+..+|+++ +.=.+..|.+.|+|.. +||++. |..-..|--|+++++.+...
T Consensus 6 Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~--------Dp~~kvR~aA~~~l~~lL~gsk~~L~~ 77 (182)
T PF13251_consen 6 ALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILK--------DPSPKVRAAAASALAALLEGSKPFLAQ 77 (182)
T ss_pred HHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHc--------CCchhHHHHHHHHHHHHHHccHHHHHH
Confidence 46677899998 7778899999999865 555443 34558999999999998863
Q ss_pred ------hCCCchhHHHHHH-------HHHHHHhcCCCCCchhhhhHHHHHHhhChhhh-hhhcccchHHHHHhhhhhhhh
Q 009716 294 ------FGHVYQNLQSRVT-------RTLLHAFLDPTKSLSQHYGAIQGLAALGPSVV-HLLILPNLELYLKFLEPEMLL 359 (528)
Q Consensus 294 ------f~~~y~~L~~RI~-------~tL~k~llDp~k~l~t~YGAI~GL~aLG~~aV-r~lilP~L~~y~~~Le~~l~~ 359 (528)
-..+|..+-.++. +.|..++..++ ...+.=-.+.+|..|-..+= ..+=-..+...+..+.+.+..
T Consensus 78 Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~-~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~ 156 (182)
T PF13251_consen 78 AEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEK-SPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRH 156 (182)
T ss_pred HHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhccc-ccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhc
Confidence 1224444444333 34555555443 34444466667766643221 112223444555555555432
Q ss_pred HhhhhhhhHHHHHHHHHHHHHhhh
Q 009716 360 EKQKNEMKRHEAWRVYGALQCAAG 383 (528)
Q Consensus 360 ~~~~~~~~r~ea~~v~~all~a~g 383 (528)
.+..++..+.-|+|+|+.+..
T Consensus 157 ---~d~~v~v~~l~~~~~l~s~~~ 177 (182)
T PF13251_consen 157 ---RDPNVRVAALSCLGALLSVQP 177 (182)
T ss_pred ---CCCcHHHHHHHHHHHHHcCCC
Confidence 455678889999999987654
No 85
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=72.81 E-value=1.1e+02 Score=33.93 Aligned_cols=159 Identities=15% Similarity=0.146 Sum_probs=102.8
Q ss_pred CcHHHHHHHHHHHHHhhcCCChHHHHHHHHHhhhcCC-----ccccchhhHHHHHHHHh-----------------hhc-
Q 009716 168 LSKELQLYFDKIRELTVSRSNSTVFKQALLSLAMDSG-----LHPLVPYFTYFISEEVT-----------------RSL- 224 (528)
Q Consensus 168 LSkElQ~Yf~kIt~a~l~~~~~~~r~~AL~sL~tD~g-----L~qLLPYfv~FI~e~V~-----------------~nl- 224 (528)
+.-+-..||+.|++.-. .++-..+=+||..|..|-. ...+.|.+++|+..... .+.
T Consensus 64 ~~~~R~~fF~~I~~~~~-~~d~~~~l~aL~~LT~~Grdi~~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~ 142 (464)
T PF11864_consen 64 SGLMRAEFFRDISDPSN-DDDFDLRLEALIALTDNGRDIDFFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLS 142 (464)
T ss_pred cHHHHHHHHHHHhcCCC-chhHHHHHHHHHHHHcCCcCchhcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccc
Confidence 45677889999976532 2344567789999987643 57799999999987660 111
Q ss_pred ---CCHHHHHHHHHHHHHhhcCCCcccc-cchhhhHHHHHHHHhcccc-----------------CCCC-----------
Q 009716 225 ---KNFSLLFALMRVARSLLRNPHIHIE-PYLHQMMPSVITCLVSKRL-----------------GNRF----------- 272 (528)
Q Consensus 225 ---~nl~~L~~llrmv~ALl~Np~L~Le-pYLHqLlPsvLTCll~k~l-----------------~~~~----------- 272 (528)
.+-..+..+++++..+++.++-+++ ..++.++-.+++.+-...- |.-|
T Consensus 143 ~~~~~~~~l~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl~~~i~vL 222 (464)
T PF11864_consen 143 NLDNEESNLSDLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESLSPCIEVL 222 (464)
T ss_pred cccchhhhHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHHHHHHHHH
Confidence 1345688899999999999998886 7778888777666433210 1101
Q ss_pred --CCCchHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhc--CCC--CCchhhhhHHHHHHhh
Q 009716 273 --SDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFL--DPT--KSLSQHYGAIQGLAAL 333 (528)
Q Consensus 273 --~~~hw~LRd~AA~lL~~I~~kf~~~y~~L~~RI~~tL~k~ll--Dp~--k~l~t~YGAI~GL~aL 333 (528)
.-+.-.+.+.|-++|..+|+.+. ....+++|...|. |+. +.....=|||.-|..+
T Consensus 223 Csi~~~~~l~~~~w~~m~nL~~S~~------g~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~l 283 (464)
T PF11864_consen 223 CSIVNSVSLCKPSWRTMRNLLKSHL------GHSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRML 283 (464)
T ss_pred hhHhcccccchhHHHHHHHHHcCcc------HHHHHHHHHHHHcccCccccccHHHHhhHHHHHHHH
Confidence 01222666677777777776332 2356778888884 332 2233344998887765
No 86
>PF13654 AAA_32: AAA domain; PDB: 3K1J_B.
Probab=72.67 E-value=12 Score=42.15 Aligned_cols=61 Identities=23% Similarity=0.258 Sum_probs=49.6
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhcc
Q 009716 8 TIEVIAQSIGVYNLSSDVALALAPDVE-----------YRVREIMQEAIKCMRHAHRTVLTANDVDSALNLR 68 (528)
Q Consensus 8 ~V~~iAes~Gi~~Lsdeaa~~La~dve-----------yrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~~ 68 (528)
.|..+++.-|+..++.+|...|.+... ..|.++++||.-+++..+++.++.+||+.|++.+
T Consensus 435 ~i~~~~~~~~L~~~~~~Av~~li~~~~R~~q~kLsl~~~~l~~ll~EA~~~A~~~~~~~I~~~~V~~Ai~~r 506 (509)
T PF13654_consen 435 FIASICQKEGLPPFDRSAVARLIEYSARLDQDKLSLRFSWLADLLREANYWARKEGAKVITAEHVEQAIEER 506 (509)
T ss_dssp HHHHHHHHHSS--BBHHHHHHHHHHHHHCC-SEEE--HHHHHHHHHHHHHHHHHCT-SSB-HHHHHHHHHH-
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCEeCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHcc
Confidence 577889999999999999888877654 3689999999999999999999999999999875
No 87
>PF03540 TFIID_30kDa: Transcription initiation factor TFIID 23-30kDa subunit; InterPro: IPR003923 Transcription initiation factor TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors. The complex includes TATA binding protein (TBP) and various TBP-associated factors (TAFS). TFIID a bona fide RNA polymerase II-specific TATA-binding protein-associated factor (TAF) and is essential for viability []. TFIID acts to nucleate the transcription complex, recruiting the rest of the factors through a direct interaction with TFIIB. The TBP subunit of TFIID is sufficient for TATA-element binding and TFIIB interaction, and can support basal transcription. The protein belongs to the TAF2H family.; GO: 0006352 transcription initiation, DNA-dependent, 0005634 nucleus
Probab=72.55 E-value=23 Score=27.81 Aligned_cols=48 Identities=13% Similarity=0.218 Sum_probs=43.4
Q ss_pred CCChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009716 3 IVPKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRH 50 (528)
Q Consensus 3 ~~~~e~V~~iAes~Gi~~Lsdeaa~~La~dveyrlreIiqeA~kfm~h 50 (528)
.+|.+-+.-+.+..|+..-+..+...++--....+.+|+.+|..+.|.
T Consensus 2 ~IPD~v~~~yL~~~G~~~~D~rv~RLvSLaaQKFisdI~~dA~q~~k~ 49 (51)
T PF03540_consen 2 TIPDEVTDYYLERSGFQTSDPRVKRLVSLAAQKFISDIANDAMQYCKI 49 (51)
T ss_pred CCCHHHHHHHHHHCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 589999999999999988777999999999999999999999888764
No 88
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.73 E-value=67 Score=39.43 Aligned_cols=129 Identities=18% Similarity=0.118 Sum_probs=88.3
Q ss_pred HHHHHHHHH--HHHHHHhCCCc-hhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhChhhhhhhcccchHHHHHhhhh
Q 009716 279 LRNFVADLI--ASICTRFGHVY-QNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLILPNLELYLKFLEP 355 (528)
Q Consensus 279 LRd~AA~lL--~~I~~kf~~~y-~~L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~~aVr~lilP~L~~y~~~Le~ 355 (528)
.|-.|+.|+ ..|...|++.- ...-..++.+..-.|. .++....=+||-++..+=..-=+.++-|+++.++..|-.
T Consensus 799 ~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~--s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ 876 (1176)
T KOG1248|consen 799 TRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLA--SNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLA 876 (1176)
T ss_pred HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHH
Confidence 455566554 45666666533 3455667777666665 455556668888888876665666788888888877665
Q ss_pred hhhhHhhhhhhhHHHHHHHHHHHHHhhhhhhhhccchhcc---CCCcchhhcccccCcccccc
Q 009716 356 EMLLEKQKNEMKRHEAWRVYGALQCAAGLCVYDRLKTVLL---RPPKQSRWESNRKGKRKASM 415 (528)
Q Consensus 356 ~l~~~~~~~~~~r~ea~~v~~all~a~g~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 415 (528)
.. .+.+++.--+|...|=+-+.+|-.+.|+.|++ .--..-+||.+.|+|||.-+
T Consensus 877 ls------~d~k~~~r~Kvr~LlekLirkfg~~eLe~~~pee~~klL~nIRK~r~R~~rK~a~ 933 (1176)
T KOG1248|consen 877 LS------HDHKIKVRKKVRLLLEKLIRKFGAEELESFLPEEDMKLLTNIRKRRRRKKRKKAM 933 (1176)
T ss_pred HH------HhhhHHHHHHHHHHHHHHHHHhCHHHHHhhCHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 32 34667788899999999999999999999965 11112467777777777754
No 89
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=71.48 E-value=43 Score=36.45 Aligned_cols=69 Identities=20% Similarity=0.173 Sum_probs=50.7
Q ss_pred chhhhHHHHHHHHhccccCCCCCCCchHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHH
Q 009716 251 YLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGL 330 (528)
Q Consensus 251 YLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~~y~~L~~RI~~tL~k~llDp~k~l~t~YGAI~GL 330 (528)
-+..++|.|..|+ .++++.+|..|+-.+.+|++.+.+..+.- +...+.+.|.|++ ....+.|+..+
T Consensus 111 ~~~~l~~~v~~ll---------~~~~~~VRk~A~~~l~~i~~~~p~~~~~~---~~~~l~~lL~d~~--~~V~~~a~~~l 176 (526)
T PF01602_consen 111 MAEPLIPDVIKLL---------SDPSPYVRKKAALALLKIYRKDPDLVEDE---LIPKLKQLLSDKD--PSVVSAALSLL 176 (526)
T ss_dssp HHHHHHHHHHHHH---------HSSSHHHHHHHHHHHHHHHHHCHCCHHGG---HHHHHHHHTTHSS--HHHHHHHHHHH
T ss_pred hhhHHHHHHHHHh---------cCCchHHHHHHHHHHHHHhccCHHHHHHH---HHHHHhhhccCCc--chhHHHHHHHH
Confidence 3456677776665 24577999999999999999966544331 5666777776544 77888898888
Q ss_pred Hhh
Q 009716 331 AAL 333 (528)
Q Consensus 331 ~aL 333 (528)
..+
T Consensus 177 ~~i 179 (526)
T PF01602_consen 177 SEI 179 (526)
T ss_dssp HHH
T ss_pred HHH
Confidence 888
No 90
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=71.10 E-value=1.5e+02 Score=31.72 Aligned_cols=228 Identities=16% Similarity=0.138 Sum_probs=127.1
Q ss_pred cccCcHHHHH-HHHHHHHHhhcC-CChHHHHHHHHHhhhcC---Cc-cccchhhHHHHHHHHhhhcCCHHHHHHHHHHHH
Q 009716 165 KHVLSKELQL-YFDKIRELTVSR-SNSTVFKQALLSLAMDS---GL-HPLVPYFTYFISEEVTRSLKNFSLLFALMRVAR 238 (528)
Q Consensus 165 kh~LSkElQ~-Yf~kIt~a~l~~-~~~~~r~~AL~sL~tD~---gL-~qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ 238 (528)
...||.|... +++..++++... .++.....+|..|+.-. .+ ..-.|--+..+-..+...+........-+.+++
T Consensus 80 ~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~i~~ 159 (372)
T PF12231_consen 80 VSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSPKIMTSDRVERLLAALHNIKNRFPSKSIISERLNIYK 159 (372)
T ss_pred HhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHhhccCCchhHHHHHHHHHH
Confidence 3468888888 678888877543 34445556777666521 11 111111122222233322344455555566666
Q ss_pred HhhcCCCcccccchhhhHHHHHHHHhccccCCCCCCCchHHHHHHHHHHHHHHHHhCCCchh-----------------H
Q 009716 239 SLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQN-----------------L 301 (528)
Q Consensus 239 ALl~Np~L~LepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~~y~~-----------------L 301 (528)
-|+.+---.+-...+.-+|.++++++... . .+|..|..++..+....+. ... +
T Consensus 160 ~ll~q~p~~M~~~~~~W~~~l~~~l~~~~---k------~ir~~a~~l~~~~~~~l~~-~~~~s~~~~~~~~~~~~~~~~ 229 (372)
T PF12231_consen 160 RLLSQFPQQMIKHADIWFPILFPDLLSSA---K------DIRTKAISLLLEAKKCLGP-NKELSKSVLEDLQRSLENGKL 229 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcc---h------HHHHHHHHHHHHHHHHhCh-hHHHHHHHHHHhccccccccH
Confidence 66666555566668888999999988741 1 5677777776666554443 111 2
Q ss_pred HHHHHHHHHHHhcC--CCCCchhhhhHHHHHHhhChhhhhhhcccchHHHHHhhhhhhhhHhhhhhhhHHHHHHHHHHHH
Q 009716 302 QSRVTRTLLHAFLD--PTKSLSQHYGAIQGLAALGPSVVHLLILPNLELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQ 379 (528)
Q Consensus 302 ~~RI~~tL~k~llD--p~k~l~t~YGAI~GL~aLG~~aVr~lilP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~v~~all 379 (528)
-.-+...+.+.+.+ ..+......+++++|. |....+ -.+++..++...|.-... .+...|.+|.+....|.
T Consensus 230 ~~~~~~~L~~mi~~~~~~~~a~~iW~~~i~LL--~~~~~~--~w~~~n~wL~v~e~cFn~---~d~~~k~~A~~aW~~li 302 (372)
T PF12231_consen 230 IQLYCERLKEMIKSKDEYKLAMQIWSVVILLL--GSSRLD--SWEHLNEWLKVPEKCFNS---SDPQVKIQAFKAWRRLI 302 (372)
T ss_pred HHHHHHHHHHHHhCcCCcchHHHHHHHHHHHh--CCchhh--ccHhHhHHHHHHHHHhcC---CCHHHHHHHHHHHHHHH
Confidence 22233334444444 2233456788888887 655433 467888888888777643 35567777777777777
Q ss_pred Hhhhhhhhhccchh-ccCCCcchhhcccccC
Q 009716 380 CAAGLCVYDRLKTV-LLRPPKQSRWESNRKG 409 (528)
Q Consensus 380 ~a~g~~~~~~~~~~-~~~~~~~~~~~~~~~~ 409 (528)
-++..-.-..-|.. +++-|...-.++..-.
T Consensus 303 y~~~~~~~~~~k~l~lL~~Pl~~~l~~~~~~ 333 (372)
T PF12231_consen 303 YASNPNELTSPKRLKLLCQPLSSQLRREKSS 333 (372)
T ss_pred HHhcCCccccHHHHHHHHHHHHHHhCccccc
Confidence 74443322222333 3444444444444333
No 91
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=68.71 E-value=47 Score=37.07 Aligned_cols=159 Identities=13% Similarity=0.190 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHhhcCCChHH---HHHHHHHhhhcCCccccchhhHHHHHHHHhhhcCCHHHHHHHHHHHHHhhcCCCccc
Q 009716 172 LQLYFDKIRELTVSRSNSTV---FKQALLSLAMDSGLHPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHIHI 248 (528)
Q Consensus 172 lQ~Yf~kIt~a~l~~~~~~~---r~~AL~sL~tD~gL~qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~Np~L~L 248 (528)
+..+.+.+.-.|+..++.+. -..+|..+=.+-....+.|.+..|+..++.+.- -......++.+..++.++.-.+
T Consensus 35 l~~~~~~~lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~--~~Vr~l~l~~l~~~~~~~~~~~ 112 (503)
T PF10508_consen 35 LERLPEPVLFDCLNTSNREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPS--PKVRRLALKQLGRIARHSEGAA 112 (503)
T ss_pred HHhchHHHHHHHHhhcChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHHhcCCHHHH
Confidence 34444444444554433322 224566666677788889999999999998743 2322333555666666666545
Q ss_pred ccch-hhhHHHHHHHHhccccCCCCCCCchHHHHHHHHHHHHHHHHhCCCchhH-HHHHHHHHHHHhcCCCC-Cchhhhh
Q 009716 249 EPYL-HQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNL-QSRVTRTLLHAFLDPTK-SLSQHYG 325 (528)
Q Consensus 249 epYL-HqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~~y~~L-~~RI~~tL~k~llDp~k-~l~t~YG 325 (528)
+... +.++|.|+.|+-. ..-.+...|+++|..|++. ......+ .+.+...|.+.+..++. .....|-
T Consensus 113 ~~~~~~~l~~~i~~~L~~---------~d~~Va~~A~~~L~~l~~~-~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~e 182 (503)
T PF10508_consen 113 QLLVDNELLPLIIQCLRD---------PDLSVAKAAIKALKKLASH-PEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYE 182 (503)
T ss_pred HHhcCccHHHHHHHHHcC---------CcHHHHHHHHHHHHHHhCC-chhHHHHhCcchHHHHHHHHhccCHHHHHHHHH
Confidence 5444 6789999999833 3347899999999999963 3222222 22225556665543221 3556788
Q ss_pred HHHHHHhhChhhhhhhc
Q 009716 326 AIQGLAALGPSVVHLLI 342 (528)
Q Consensus 326 AI~GL~aLG~~aVr~li 342 (528)
.++-++...+++...+.
T Consensus 183 l~v~i~~~S~~~~~~~~ 199 (503)
T PF10508_consen 183 LLVEIASHSPEAAEAVV 199 (503)
T ss_pred HHHHHHhcCHHHHHHHH
Confidence 88888888887766544
No 92
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=67.95 E-value=18 Score=40.73 Aligned_cols=62 Identities=19% Similarity=0.141 Sum_probs=47.0
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHhCCCccCHhhHHHHHhccCC
Q 009716 8 TIEVIAQSIGVYNLSSDVALALAPDVE-Y-RVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNV 70 (528)
Q Consensus 8 ~V~~iAes~Gi~~Lsdeaa~~La~dve-y-rlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~~nv 70 (528)
-++..|+..|+ .+++++.+.|+.... . .+..+++.|...+...+|..++.+||..++..-..
T Consensus 271 Il~~~a~k~~i-~is~~al~~I~~y~~n~Rel~nll~~Aa~~A~~~~~~~It~~dI~~vl~~~~~ 334 (531)
T TIGR02902 271 IAKNAAEKIGI-NLEKHALELIVKYASNGREAVNIVQLAAGIALGEGRKRILAEDIEWVAENGNY 334 (531)
T ss_pred HHHHHHHHcCC-CcCHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCcEEcHHHHHHHhCCccc
Confidence 34556777887 699999998876554 1 26667788888887778899999999999865443
No 93
>PRK09687 putative lyase; Provisional
Probab=67.29 E-value=19 Score=37.09 Aligned_cols=57 Identities=11% Similarity=0.143 Sum_probs=43.5
Q ss_pred CCchHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhChh
Q 009716 274 DNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPS 336 (528)
Q Consensus 274 ~~hw~LRd~AA~lL~~I~~kf~~~y~~L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~~ 336 (528)
+..|.+|..|+..|+++|..... -.+++...+...+.|+ +...+++|+.+|..+|..
T Consensus 102 D~d~~VR~~A~~aLG~~~~~~~~----~~~~a~~~l~~~~~D~--~~~VR~~a~~aLg~~~~~ 158 (280)
T PRK09687 102 DKSACVRASAINATGHRCKKNPL----YSPKIVEQSQITAFDK--STNVRFAVAFALSVINDE 158 (280)
T ss_pred CCCHHHHHHHHHHHhcccccccc----cchHHHHHHHHHhhCC--CHHHHHHHHHHHhccCCH
Confidence 56789999999999999764322 2467777787887776 557889999999888754
No 94
>COG5247 BUR6 Class 2 transcription repressor NC2, alpha subunit (DRAP1 homolog) [Transcription]
Probab=66.95 E-value=18 Score=32.26 Aligned_cols=63 Identities=19% Similarity=0.233 Sum_probs=49.3
Q ss_pred CCChHHHHHHHH---HcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhc
Q 009716 3 IVPKETIEVIAQ---SIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (528)
Q Consensus 3 ~~~~e~V~~iAe---s~Gi~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~ 67 (528)
-+|.+-|+.|.+ .+|- ++...--.....+|..+.+|++++.|-+|.-.-+++|.+.+.+|...
T Consensus 23 rFP~ar~KkIMQ~deDiGK--V~q~tPVIaskalE~Fl~~iv~~s~k~aR~~~skR~t~e~lk~a~~s 88 (113)
T COG5247 23 RFPIARLKKIMQLDEDIGK--VGQSTPVIASKALEMFLTEIVGLSLKEARKKSSKRMTSEFLKRATES 88 (113)
T ss_pred cCCHHHHHHHHHhhhhhhh--hhhcchHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHhh
Confidence 478888888764 3443 33333334567899999999999999999999999999999999754
No 95
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=65.07 E-value=14 Score=38.26 Aligned_cols=58 Identities=16% Similarity=0.248 Sum_probs=48.8
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHh
Q 009716 7 ETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALN 66 (528)
Q Consensus 7 e~V~~iAes~Gi~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~ 66 (528)
+.++.+++..|+ .+++++++.|++-+.-.++.++++.-|....++ +++|.+||+.++.
T Consensus 183 ~~l~~~~~~~g~-~i~~~a~~~l~~~~~g~~~~a~~~lekl~~~~~-~~it~~~v~~~~~ 240 (355)
T TIGR02397 183 ERLKKILDKEGI-KIEDEALELIARAADGSLRDALSLLDQLISFGN-GNITYEDVNELLG 240 (355)
T ss_pred HHHHHHHHHcCC-CCCHHHHHHHHHHcCCChHHHHHHHHHHHhhcC-CCCCHHHHHHHhC
Confidence 356777788998 599999999999999889999998888887776 4599999998773
No 96
>KOG1744 consensus Histone H2B [Chromatin structure and dynamics]
Probab=64.13 E-value=19 Score=33.34 Aligned_cols=48 Identities=19% Similarity=0.223 Sum_probs=39.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhcc
Q 009716 21 LSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLR 68 (528)
Q Consensus 21 Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~~ 68 (528)
++.++...+-..+...+..|+.||.++++-.||.+++..+|..|++++
T Consensus 56 is~~a~~vmnsf~ndife~iA~ea~rla~y~krstisSreiqta~rLl 103 (127)
T KOG1744|consen 56 ISSKAMGVMNSFVNDIFERIASEAGRLAHYNKRSTISSREIQTAVRLL 103 (127)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCcccHHHHHHHHHHh
Confidence 445555555555566688889999999999999999999999999874
No 97
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=63.92 E-value=38 Score=36.52 Aligned_cols=107 Identities=14% Similarity=0.263 Sum_probs=65.1
Q ss_pred CchHHHHHHHHHHHHHHHHhCCCchhHHHH-HHHHHHHHhcCCCCCchhhhhHHHHHHhhChhh------hh--hhcccc
Q 009716 275 NHWDLRNFVADLIASICTRFGHVYQNLQSR-VTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSV------VH--LLILPN 345 (528)
Q Consensus 275 ~hw~LRd~AA~lL~~I~~kf~~~y~~L~~R-I~~tL~k~llDp~k~l~t~YGAI~GL~aLG~~a------Vr--~lilP~ 345 (528)
|.-.-|.-|.++|..+|++|+.....+-.. |...|.+.=.+|....-..-||+.-+.++.... |. ..+++-
T Consensus 223 d~~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v 302 (370)
T PF08506_consen 223 DSDTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDV 302 (370)
T ss_dssp ---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-H
T ss_pred ccCCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccH
Confidence 445678889999999999998765444333 333333333478888889999999888874432 11 234455
Q ss_pred hHHHHHhhhhhhhhHhhhhhhhHHHHHHHHHHHHHh
Q 009716 346 LELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQCA 381 (528)
Q Consensus 346 L~~y~~~Le~~l~~~~~~~~~~r~ea~~v~~all~a 381 (528)
..-+...+-|+|.+........|.+|-|+.-..-+.
T Consensus 303 ~~Ff~~~v~peL~~~~~~~piLka~aik~~~~Fr~~ 338 (370)
T PF08506_consen 303 VDFFSQHVLPELQPDVNSHPILKADAIKFLYTFRNQ 338 (370)
T ss_dssp HHHHHHHTCHHHH-SS-S-HHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHhHHHhcccCCCCcchHHHHHHHHHHHHhh
Confidence 566667888888733345566788888876554443
No 98
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=62.57 E-value=17 Score=37.22 Aligned_cols=58 Identities=19% Similarity=0.133 Sum_probs=47.1
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhc
Q 009716 7 ETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (528)
Q Consensus 7 e~V~~iAes~Gi~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~ 67 (528)
+.++.+++..|+ .+++++++.|+....-.+|+++....+.. ....++|.+||+.++..
T Consensus 191 ~~l~~~~~~~~~-~~~~~al~~l~~~~~gdlr~l~~~l~~~~--~~~~~It~~~v~~~~~~ 248 (337)
T PRK12402 191 DVLESIAEAEGV-DYDDDGLELIAYYAGGDLRKAILTLQTAA--LAAGEITMEAAYEALGD 248 (337)
T ss_pred HHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHH--HcCCCCCHHHHHHHhCC
Confidence 346677778899 49999999999999888999988887766 34458999999987754
No 99
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=61.91 E-value=48 Score=31.52 Aligned_cols=103 Identities=18% Similarity=0.207 Sum_probs=69.2
Q ss_pred chHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhChh-hhhhhcccch-HHHHHhh
Q 009716 276 HWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPS-VVHLLILPNL-ELYLKFL 353 (528)
Q Consensus 276 hw~LRd~AA~lL~~I~~kf~~~y~~L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~~-aVr~lilP~L-~~y~~~L 353 (528)
|..+|--+...++.+|.+|++ +--+.+..+.+.|.|+ ....+..|+..|+.|-.+ .++ +-+++ ..+...|
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~----~ve~~~~~l~~~L~D~--~~~VR~~al~~Ls~Li~~d~ik--~k~~l~~~~l~~l 72 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPN----LVEPYLPNLYKCLRDE--DPLVRKTALLVLSHLILEDMIK--VKGQLFSRILKLL 72 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcH----HHHhHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHcCcee--ehhhhhHHHHHHH
Confidence 568999999999999999764 5566677777888876 577788999999998332 222 11222 3343333
Q ss_pred hhhhhhHhhhhhhhHHHHHHHHHHHHHh-hhhhhhhccchh
Q 009716 354 EPEMLLEKQKNEMKRHEAWRVYGALQCA-AGLCVYDRLKTV 393 (528)
Q Consensus 354 e~~l~~~~~~~~~~r~ea~~v~~all~a-~g~~~~~~~~~~ 393 (528)
. ..|..+|.-|..+..-+..- -+..+++-+...
T Consensus 73 ~-------D~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~ 106 (178)
T PF12717_consen 73 V-------DENPEIRSLARSFFSELLKKRNPNIIYNNFPEL 106 (178)
T ss_pred c-------CCCHHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 2 23566777788777777766 555566555554
No 100
>COG5150 Class 2 transcription repressor NC2, beta subunit (Dr1) [Transcription]
Probab=56.62 E-value=51 Score=30.60 Aligned_cols=68 Identities=16% Similarity=0.166 Sum_probs=57.2
Q ss_pred CChHHHHHHHHHcCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhccCCC
Q 009716 4 VPKETIEVIAQSIGVYN--LSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNVE 71 (528)
Q Consensus 4 ~~~e~V~~iAes~Gi~~--Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~~nve 71 (528)
+|++||+-+..++==.+ .+.|+-..+-..--|.|.-+-.+|.+.+..-+.+++..++|=.||+.+..+
T Consensus 12 LPKATVqKMvS~iLp~dl~ftKearei~in~cieFi~~lsseAne~ce~EaKKTIa~EHviKALenLef~ 81 (148)
T COG5150 12 LPKATVQKMVSSILPKDLVFTKEAREIFINACIEFINMLSSEANEACEEEAKKTIAYEHVIKALENLEFE 81 (148)
T ss_pred CcHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHhccHH
Confidence 89999998887764333 466888877777778999999999999999999999999999999876543
No 101
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=56.39 E-value=2.5e+02 Score=29.07 Aligned_cols=200 Identities=16% Similarity=0.102 Sum_probs=94.9
Q ss_pred ccCcHHHHHHHHHHHHHhhcCCChHHHHHHHHHhhhcCCccccchhhHHHHHHHHhhhc-CCHHHHHHHHHHHHHhhcCC
Q 009716 166 HVLSKELQLYFDKIRELTVSRSNSTVFKQALLSLAMDSGLHPLVPYFTYFISEEVTRSL-KNFSLLFALMRVARSLLRNP 244 (528)
Q Consensus 166 h~LSkElQ~Yf~kIt~a~l~~~~~~~r~~AL~sL~tD~gL~qLLPYfv~FI~e~V~~nl-~nl~~L~~llrmv~ALl~Np 244 (528)
..+|.|.-.+.+++-...... +++. +..|.. ....-|+ .+-.++ .+...+.|++.++.-|+...
T Consensus 24 ~~is~~~~~~ik~~~~~~~~~-----~~~~---~~~~~~--~~~~~~l-----~lL~~~~~~~d~v~yvL~li~dll~~~ 88 (312)
T PF03224_consen 24 GLISEEDLSLIKKLDKQSKEE-----RREL---LEEDGD--QYASLFL-----NLLNKLSSNDDTVQYVLTLIDDLLSDD 88 (312)
T ss_dssp TSS-HHHHHHHHHHHHHHH----------------------------------HHHHHH---HHHHHHHHHHHHHHHH-S
T ss_pred CCCCHHHHHHHHHHHCCCHHH-----HHHH---HHhchh--hHHHHHH-----HHHHHccCcHHHHHHHHHHHHHHHhcC
Confidence 467888887887776654321 2222 222221 1111222 233333 67889999998888888776
Q ss_pred CcccccchhhhHH----HHHHHHhccccCCCCCCCchHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCC-
Q 009716 245 HIHIEPYLHQMMP----SVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKS- 319 (528)
Q Consensus 245 ~L~LepYLHqLlP----svLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~~y~~L~~RI~~tL~k~llDp~k~- 319 (528)
. .....++.+-. ...+..+. .+ ..++|.+...|+.+|+.++...+..-......++..|.+.+.+-.++
T Consensus 89 ~-~~~~~~~~~~~~~~~~~~~~fl~-ll----~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~ 162 (312)
T PF03224_consen 89 P-SRVELFLELAKQDDSDPYSPFLK-LL----DRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSS 162 (312)
T ss_dssp S-SSHHHHHHHHH-TTH--HHHHHH-H-----S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HH
T ss_pred H-HHHHHHHHhcccccchhHHHHHH-Hh----cCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCC
Confidence 6 33333333221 11122221 11 13478999999999999998766654443345666666665542222
Q ss_pred -chhhhhHHHHHHhh-ChhhhhhhcccchHHHHHhhhhhhhhHhhhhhhhHHHHHHHHHHHHHhhhhhhhhcc
Q 009716 320 -LSQHYGAIQGLAAL-GPSVVHLLILPNLELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQCAAGLCVYDRL 390 (528)
Q Consensus 320 -l~t~YGAI~GL~aL-G~~aVr~lilP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~v~~all~a~g~~~~~~~ 390 (528)
....+.|+.+|..| ..+..|..++= ......|-+-+. ............-.|.++++.=-..+.+..
T Consensus 163 ~~~~~~~av~~L~~LL~~~~~R~~f~~--~~~v~~l~~iL~--~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~ 231 (312)
T PF03224_consen 163 DSELQYIAVQCLQNLLRSKEYRQVFWK--SNGVSPLFDILR--KQATNSNSSGIQLQYQALLCLWLLSFEPEI 231 (312)
T ss_dssp HH---HHHHHHHHHHHTSHHHHHHHHT--HHHHHHHHHHHH-----------HHHHHHHHHHHHHHHTTSHHH
T ss_pred CcchHHHHHHHHHHHhCcchhHHHHHh--cCcHHHHHHHHH--hhcccCCCCchhHHHHHHHHHHHHhcCHHH
Confidence 22348999999997 66767765533 223333322221 011111223455566666655544444443
No 102
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=55.99 E-value=75 Score=25.58 Aligned_cols=51 Identities=18% Similarity=0.264 Sum_probs=38.8
Q ss_pred CCchHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhChh
Q 009716 274 DNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPS 336 (528)
Q Consensus 274 ~~hw~LRd~AA~lL~~I~~kf~~~y~~L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~~ 336 (528)
+..|.+|..|+.+|+.+ + .+++...|.+.+.| .......=|+..|..+|..
T Consensus 11 ~~~~~vr~~a~~~L~~~----~------~~~~~~~L~~~l~d--~~~~vr~~a~~aL~~i~~~ 61 (88)
T PF13646_consen 11 DPDPQVRAEAARALGEL----G------DPEAIPALIELLKD--EDPMVRRAAARALGRIGDP 61 (88)
T ss_dssp SSSHHHHHHHHHHHHCC----T------HHHHHHHHHHHHTS--SSHHHHHHHHHHHHCCHHH
T ss_pred CCCHHHHHHHHHHHHHc----C------CHhHHHHHHHHHcC--CCHHHHHHHHHHHHHhCCH
Confidence 56789999999999933 2 23677778888754 5567888999999999853
No 103
>PRK09687 putative lyase; Provisional
Probab=55.96 E-value=22 Score=36.63 Aligned_cols=64 Identities=23% Similarity=0.344 Sum_probs=44.8
Q ss_pred hhHHHHHHHHhccccCCCCCCCchHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhh
Q 009716 254 QMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAAL 333 (528)
Q Consensus 254 qLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~~y~~L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~aL 333 (528)
.-+|.++.++ .++.|.+|..|+.-|+.+ .+++ +.+...|.+++.|++. ...-+|+.||..+
T Consensus 159 ~ai~~L~~~L---------~d~~~~VR~~A~~aLg~~--~~~~------~~~~~~L~~~L~D~~~--~VR~~A~~aLg~~ 219 (280)
T PRK09687 159 AAIPLLINLL---------KDPNGDVRNWAAFALNSN--KYDN------PDIREAFVAMLQDKNE--EIRIEAIIGLALR 219 (280)
T ss_pred HHHHHHHHHh---------cCCCHHHHHHHHHHHhcC--CCCC------HHHHHHHHHHhcCCCh--HHHHHHHHHHHcc
Confidence 4566666665 356778999999999988 3322 2566667777776644 4566899999988
Q ss_pred Chh
Q 009716 334 GPS 336 (528)
Q Consensus 334 G~~ 336 (528)
|..
T Consensus 220 ~~~ 222 (280)
T PRK09687 220 KDK 222 (280)
T ss_pred CCh
Confidence 874
No 104
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=55.73 E-value=61 Score=31.36 Aligned_cols=105 Identities=15% Similarity=0.180 Sum_probs=54.3
Q ss_pred CCCchHHHHHHHHHHHHHHHHh--CCCchhHHHHHH---HHHHHHhcCCCCCchhhhhHHHHHHhhChhhhhhhcccchH
Q 009716 273 SDNHWDLRNFVADLIASICTRF--GHVYQNLQSRVT---RTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLILPNLE 347 (528)
Q Consensus 273 ~~~hw~LRd~AA~lL~~I~~kf--~~~y~~L~~RI~---~tL~k~llDp~k~l~t~YGAI~GL~aLG~~aVr~lilP~L~ 347 (528)
.+..|.-|..|-.-|..+++.. ....+.+-..+- ..+.+.+.|....+.. -|+..+..|....=.. +=|++.
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~--~A~~~l~~l~~~l~~~-~~~~~~ 93 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSK--TACQLLSDLARQLGSH-FEPYAD 93 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHH--HHHHHHHHHHHHHGGG-GHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHH--HHHHHHHHHHHHHhHh-HHHHHH
Confidence 4678999999999999999977 222333333222 4555666655555544 3444444443322221 223344
Q ss_pred HHHHhhhhhhhhHhhhhhhhHHHHHHHHHHHHHhhh
Q 009716 348 LYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQCAAG 383 (528)
Q Consensus 348 ~y~~~Le~~l~~~~~~~~~~r~ea~~v~~all~a~g 383 (528)
.+...|-..+ ...+...|..|..+..++...++
T Consensus 94 ~~l~~Ll~~~---~~~~~~i~~~a~~~L~~i~~~~~ 126 (228)
T PF12348_consen 94 ILLPPLLKKL---GDSKKFIREAANNALDAIIESCS 126 (228)
T ss_dssp HHHHHHHHGG---G---HHHHHHHHHHHHHHHTTS-
T ss_pred HHHHHHHHHH---ccccHHHHHHHHHHHHHHHHHCC
Confidence 4433333332 23466788899999999888777
No 105
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=55.25 E-value=3.3e+02 Score=33.41 Aligned_cols=145 Identities=17% Similarity=0.237 Sum_probs=103.2
Q ss_pred CHHHHHHHHHHHHHhhcCCCcccccchhhhHHHHHHHHhccccCCCCCCCchHHHHHHHHHHHHHHHHhCCCchhHHHHH
Q 009716 226 NFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRV 305 (528)
Q Consensus 226 nl~~L~~llrmv~ALl~Np~L~LepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~~y~~L~~RI 305 (528)
+...+...++++.+++.--.-.+..|+..++|.++.- |+....+|=+||++.-+.+....+|+.....-.-|-|
T Consensus 226 q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y------~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pei 299 (1233)
T KOG1824|consen 226 QMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADY------CNKIEEDDDELREYCLQALESFLRRCPKEILPHVPEI 299 (1233)
T ss_pred chHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHH------hcccccCcHHHHHHHHHHHHHHHHhChhhhcccchHH
Confidence 3567778899999999999999999999999987754 3433467779999999999999999887776777788
Q ss_pred HHHHHHHhc-CCCCCchh-------------------------------hhhHHHHHHhhChhhhhhhcccch---HHHH
Q 009716 306 TRTLLHAFL-DPTKSLSQ-------------------------------HYGAIQGLAALGPSVVHLLILPNL---ELYL 350 (528)
Q Consensus 306 ~~tL~k~ll-Dp~k~l~t-------------------------------~YGAI~GL~aLG~~aVr~lilP~L---~~y~ 350 (528)
++.+++.+. ||+-...+ +=-|..++. .+|.-+. +.++
T Consensus 300 ~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~--------a~IsSR~E~L~~~~ 371 (1233)
T KOG1824|consen 300 INLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLE--------AVISSRLEMLPDFY 371 (1233)
T ss_pred HHHHHHHhccCCCCCCCCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHH--------HHHhccHHHHHHHH
Confidence 888877764 78765544 223333333 3343333 3333
Q ss_pred HhhhhhhhhH-hhhhhhhHHHHHHHHHHHHHhhhh
Q 009716 351 KFLEPEMLLE-KQKNEMKRHEAWRVYGALQCAAGL 384 (528)
Q Consensus 351 ~~Le~~l~~~-~~~~~~~r~ea~~v~~all~a~g~ 384 (528)
..+-|.+-.. +..+++++.|...+|-+|++-++.
T Consensus 372 q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~ 406 (1233)
T KOG1824|consen 372 QTLGPALISRFKEREENVKADVFHAYIALLKQTRP 406 (1233)
T ss_pred HHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCC
Confidence 4444444322 456788999999999999876543
No 106
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=54.15 E-value=27 Score=39.15 Aligned_cols=58 Identities=12% Similarity=0.111 Sum_probs=51.0
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHh
Q 009716 7 ETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALN 66 (528)
Q Consensus 7 e~V~~iAes~Gi~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~ 66 (528)
+.++.+++.-|+ .+++++++.|++..+-.+|.+++..-+.+.+++ .++|.+||+..+.
T Consensus 182 ~~L~~ia~~Egi-~i~~eAL~lIa~~s~GslR~alslLdqli~y~~-~~It~e~V~~llg 239 (491)
T PRK14964 182 EHLVDIAKKENI-EHDEESLKLIAENSSGSMRNALFLLEQAAIYSN-NKISEKSVRDLLG 239 (491)
T ss_pred HHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcC-CCCCHHHHHHHHc
Confidence 467788888999 699999999999999999999999989888887 4899999998773
No 107
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=53.90 E-value=12 Score=35.13 Aligned_cols=78 Identities=17% Similarity=0.325 Sum_probs=48.1
Q ss_pred CCccccchhhHHHHHHHHhhhcCCHHHHHHHHHHHHHhhcCCCcccccch--hhhHHHHHHHHhccccCCCCCCCchHHH
Q 009716 203 SGLHPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHIHIEPYL--HQMMPSVITCLVSKRLGNRFSDNHWDLR 280 (528)
Q Consensus 203 ~gL~qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~Np~L~LepYL--HqLlPsvLTCll~k~l~~~~~~~hw~LR 280 (528)
-|+..|+-.+.++... -..+-.+.......++.++||+.|+. -++-.+ +..+..+..|+.+ .+...|
T Consensus 107 ~G~~~L~~~L~~~~~~-~~~~~~~~~~~~~~l~Clkal~n~~~-G~~~v~~~~~~v~~i~~~L~s---------~~~~~r 175 (187)
T PF06371_consen 107 GGLEALLNVLSKLNKK-KEKSEEDIDIEHECLRCLKALMNTKY-GLEAVLSHPDSVNLIALSLDS---------PNIKTR 175 (187)
T ss_dssp HHHHHHHHHHHHHHTH-HCTCTTCHHHHHHHHHHHHHHTSSHH-HHHHHHCSSSHHHHHHHT--T---------TSHHHH
T ss_pred CCHHHHHHHHHHhhhh-hhhcchhHHHHHHHHHHHHHHHccHH-HHHHHHcCcHHHHHHHHHHCC---------CCHHHH
Confidence 3555555544443222 22223456777888999999998874 233333 3456666667644 345899
Q ss_pred HHHHHHHHHHH
Q 009716 281 NFVADLIASIC 291 (528)
Q Consensus 281 d~AA~lL~~I~ 291 (528)
..|..+|+.||
T Consensus 176 ~~~leiL~~lc 186 (187)
T PF06371_consen 176 KLALEILAALC 186 (187)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999998
No 108
>PRK09087 hypothetical protein; Validated
Probab=52.11 E-value=69 Score=31.87 Aligned_cols=60 Identities=15% Similarity=0.049 Sum_probs=46.2
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCccCHhhHHHHHhcc
Q 009716 8 TIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHA--HRTVLTANDVDSALNLR 68 (528)
Q Consensus 8 ~V~~iAes~Gi~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hs--kR~~Lt~~DI~~AL~~~ 68 (528)
-++..++..|+ .+++|+...|++..+-.+++++.-..+.-+.+ ..+++|...++.+|+..
T Consensus 161 iL~~~~~~~~~-~l~~ev~~~La~~~~r~~~~l~~~l~~L~~~~~~~~~~it~~~~~~~l~~~ 222 (226)
T PRK09087 161 VIFKLFADRQL-YVDPHVVYYLVSRMERSLFAAQTIVDRLDRLALERKSRITRALAAEVLNEM 222 (226)
T ss_pred HHHHHHHHcCC-CCCHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhh
Confidence 46677778899 69999999999999988888887333333333 34569999999999764
No 109
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=51.84 E-value=49 Score=38.02 Aligned_cols=60 Identities=13% Similarity=0.188 Sum_probs=47.6
Q ss_pred HHHHHHHcC-CCCCCHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhcc
Q 009716 9 IEVIAQSIG-VYNLSSDVALALAPDVE-------------YRVREIMQEAIKCMRHAHRTVLTANDVDSALNLR 68 (528)
Q Consensus 9 V~~iAes~G-i~~Lsdeaa~~La~dve-------------yrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~~ 68 (528)
|...++.-| +..+++++...|.+... ..|..|+++|..+++..++..++.+||..|++..
T Consensus 318 i~~~~~r~G~l~~~s~~Av~~Li~~~~R~ag~r~~lsl~~R~L~~llR~A~~iA~~~~~~~I~~ehV~~Ai~~~ 391 (608)
T TIGR00764 318 VAQEVKKDGRIPHFTRDAVEEIVREAQRRAGRKDHLTLRLRELGGLVRAAGDIAKSSGKVYVTAEHVLKAKKLA 391 (608)
T ss_pred HHHHHHHhCCCCcCCHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHH
Confidence 344445554 66799999999976544 3488899999889988899999999999999875
No 110
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=51.64 E-value=1.4e+02 Score=33.10 Aligned_cols=140 Identities=16% Similarity=0.260 Sum_probs=80.5
Q ss_pred ccccchhhhHHHHHHHHhccccCCCCCCCchHHHHHHHHHHHHHHHHhCCC----chhHHHHHHHHHHHHhcCCCCCchh
Q 009716 247 HIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHV----YQNLQSRVTRTLLHAFLDPTKSLSQ 322 (528)
Q Consensus 247 ~LepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~~----y~~L~~RI~~tL~k~llDp~k~l~t 322 (528)
.|.|++.+|+-.+...+-... ..+| ||--+++-+++...... ...+-++++..+..+-.+|.+|..+
T Consensus 19 di~p~~~~ll~~Lf~~i~~~~----s~EN-----eylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~Fn 89 (435)
T PF03378_consen 19 DIQPFAQQLLQNLFALIEKPG----SAEN-----EYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFN 89 (435)
T ss_dssp GTTCCHHHHHHHHHHHHHTT-----STC------HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHH
T ss_pred HhhhhHHHHHHHHHHHHhcCC----Cccc-----hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchh
Confidence 678999998888888774421 1344 34444555555444433 4678888899999999999999999
Q ss_pred hh--hHHHHHHhhCh----h---hhhhhcccchHHHHHhhhhhhhhHhhhhhhhHHHHHHHHHHHHHhhh-hhhhhccch
Q 009716 323 HY--GAIQGLAALGP----S---VVHLLILPNLELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQCAAG-LCVYDRLKT 392 (528)
Q Consensus 323 ~Y--GAI~GL~aLG~----~---aVr~lilP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~v~~all~a~g-~~~~~~~~~ 392 (528)
|| =+|..|..... + .++..++|-+..++..=-.+. --.+.++.+.|+..-. .-+-+..+.
T Consensus 90 HylFEsi~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV~EF----------~PYvfQIla~Lle~~~~~~~p~~y~~ 159 (435)
T PF03378_consen 90 HYLFESIGALIRFVCEADPEAVSQFEEALFPPFQEILQQDVQEF----------IPYVFQILAQLLELRPSSPLPDAYKQ 159 (435)
T ss_dssp HHHHHHHHHHHHHS-GGGHH---HHHHHHHHHHHHHHHTT-TTT----------HHHHHHHHHHHHHHSS--S--TTTGG
T ss_pred hhHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHcCCCCCCcHHHHH
Confidence 98 45555555433 2 345556666555543111111 1246788888887655 112222222
Q ss_pred h---ccCCCcchhhccccc
Q 009716 393 V---LLRPPKQSRWESNRK 408 (528)
Q Consensus 393 ~---~~~~~~~~~~~~~~~ 408 (528)
+ |+.| ..|.++|.
T Consensus 160 L~~~Ll~p---~lWe~~gn 175 (435)
T PF03378_consen 160 LFPPLLSP---ALWERRGN 175 (435)
T ss_dssp GHHHHTSG---GGGGSTTT
T ss_pred HHHHHcCc---chhccCCC
Confidence 2 4554 78988876
No 111
>KOG3901 consensus Transcription initiation factor IID subunit [Transcription]
Probab=50.87 E-value=38 Score=30.39 Aligned_cols=42 Identities=19% Similarity=0.143 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhc
Q 009716 23 SDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (528)
Q Consensus 23 deaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~ 67 (528)
++.++.|-+-|-.+|.++.+.| |.-++|.++..+||..+||-
T Consensus 30 ~~tv~~Le~iV~~Yi~elt~~a---~~~g~rgk~~veD~~f~lRk 71 (109)
T KOG3901|consen 30 PETVDLLEDIVLEYITELTHAA---MEIGKRGKVKVEDFKFLLRK 71 (109)
T ss_pred HhHHHHHHHHHHHHHHHHHHHH---HHhcccCceeHHHHHHHHHh
Confidence 4778888888999999996655 44559999999999999974
No 112
>COG5248 TAF19 Transcription initiation factor TFIID, subunit TAF13 [Transcription]
Probab=50.78 E-value=39 Score=30.59 Aligned_cols=43 Identities=23% Similarity=0.094 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhc
Q 009716 23 SDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (528)
Q Consensus 23 deaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~ 67 (528)
.+.++.|-+-|-.++.++.-+|...+. -|.++.++|+..||+-
T Consensus 30 ~dt~~~L~e~V~dY~~~~ctna~~~Aq--~rnK~k~eDfkfaLr~ 72 (126)
T COG5248 30 YDTAEALHEYVLDYMSILCTNAHNMAQ--VRNKTKTEDFKFALRR 72 (126)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH--hcccchHHHHHHHHhh
Confidence 378899999999999999999999988 7899999999999975
No 113
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=50.47 E-value=36 Score=35.02 Aligned_cols=57 Identities=12% Similarity=0.099 Sum_probs=43.6
Q ss_pred CchHHHHHHHHHHHHHHHHhCCCchhHHH---------HHHHHHHHHhcCCCCCchhhhhHHHHHHhh
Q 009716 275 NHWDLRNFVADLIASICTRFGHVYQNLQS---------RVTRTLLHAFLDPTKSLSQHYGAIQGLAAL 333 (528)
Q Consensus 275 ~hw~LRd~AA~lL~~I~~kf~~~y~~L~~---------RI~~tL~k~llDp~k~l~t~YGAI~GL~aL 333 (528)
++=.+|-.|.+.+-.++-.||..+-.-.. .+.+.|.+.+.+. ....+.=|+-|++.|
T Consensus 76 ~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~--~~~~~~~a~EGl~KL 141 (298)
T PF12719_consen 76 DDEEVKITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSE--NPELQAIAVEGLCKL 141 (298)
T ss_pred CCHHHHHHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcC--CHHHHHHHHHHHHHH
Confidence 47799999999999999999977654444 5888888888755 444566777787775
No 114
>KOG1823 consensus DRIM (Down-regulated in metastasis)-like proteins [Defense mechanisms]
Probab=50.47 E-value=54 Score=40.86 Aligned_cols=117 Identities=22% Similarity=0.275 Sum_probs=72.3
Q ss_pred HHHHHHHhhcCCCcccccchhhhHHHHHHHHhccccCCCCCCCchHHHHHHHHHHHHHHHHhCCCch-hHHHHHHHHHHH
Q 009716 233 LMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQ-NLQSRVTRTLLH 311 (528)
Q Consensus 233 llrmv~ALl~Np~L~LepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~~y~-~L~~RI~~tL~k 311 (528)
.+-++.+.+.|..+.+. .||+++-=+-..+.++ ...+||-|-+++++|++--|..|- .+-+-+--|+.+
T Consensus 544 ~~~~~~~~l~~~~i~~~-~L~~illkic~~l~~~---------s~e~rd~srktl~~i~k~Lg~~yl~~Vi~el~~Tl~r 613 (1364)
T KOG1823|consen 544 ALVFLVLFLGNAEIVLR-NLPSILLDICYLLRSR---------SAELRDASRKTLAKIIKILGPKYLYFVIKELQTTLKR 613 (1364)
T ss_pred HHHHHHhcccchHHHHh-cCcHHHHHHHHHHhhh---------hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 34455566666555443 3343332222222332 348999999999999997776662 455566667777
Q ss_pred HhcCCCCCchhhh--hHHHHHHhhChhhhhhhcccchHHHHHhhhhhhhhHh
Q 009716 312 AFLDPTKSLSQHY--GAIQGLAALGPSVVHLLILPNLELYLKFLEPEMLLEK 361 (528)
Q Consensus 312 ~llDp~k~l~t~Y--GAI~GL~aLG~~aVr~lilP~L~~y~~~Le~~l~~~~ 361 (528)
.+.=-...++.|| ||+.+...-|. ...++=|.+....+.+--+...++
T Consensus 614 g~q~hvl~~tvh~ll~a~~~v~~~g~--Ld~~~~~~i~i~~e~~fg~v~~ek 663 (1364)
T KOG1823|consen 614 GFQVHVLSYTVHYLLGAMKNVLKAGS--LDTCLDPIIKIFNENLFGEVGKEK 663 (1364)
T ss_pred hhhhhhhHHHHHHHHHHHhccccccc--HHHHHHHHHHHHHHHHHHHHhhhh
Confidence 7665556677777 77776666664 455566777777777766655443
No 115
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=50.47 E-value=85 Score=32.83 Aligned_cols=91 Identities=18% Similarity=0.218 Sum_probs=65.6
Q ss_pred HHHHHHhhhcCCHHHHHHHHHHHHHhhcCCCcccccc-hhhhHHHHHHHHhccccCCCCCCCchHHHHHHHHHHHHHHHH
Q 009716 215 FISEEVTRSLKNFSLLFALMRVARSLLRNPHIHIEPY-LHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTR 293 (528)
Q Consensus 215 FI~e~V~~nl~nl~~L~~llrmv~ALl~Np~L~LepY-LHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k 293 (528)
|+.+.|...+.+-+.+.-++|..++++.+-.-.+..- ...+--+++.|+++..+ .|..|..|.+.|..++.+
T Consensus 164 ll~~kvyskl~~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~-------~~~vR~~A~~~l~~l~~~ 236 (339)
T PF12074_consen 164 LLSEKVYSKLASEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNV-------SWKVRRAALSALKKLYAS 236 (339)
T ss_pred hcCHHHHhccCCHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCC-------CHHHHHHHHHHHHHHHHh
Confidence 4466666666677788889999999998866655333 25555688888877432 579999999999999998
Q ss_pred hCCCchhHHHHHHHHHHHHhcC
Q 009716 294 FGHVYQNLQSRVTRTLLHAFLD 315 (528)
Q Consensus 294 f~~~y~~L~~RI~~tL~k~llD 315 (528)
.... +..-|+..+.+.+.+
T Consensus 237 ~~~~---l~~~li~~l~~~l~~ 255 (339)
T PF12074_consen 237 NPEL---LSKSLISGLWKWLSS 255 (339)
T ss_pred ChHH---HHHHHHHHHHHHHHh
Confidence 7653 556666666666653
No 116
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=50.27 E-value=4.7e+02 Score=31.26 Aligned_cols=173 Identities=16% Similarity=0.248 Sum_probs=100.4
Q ss_pred hcCCccccchhhHHHHHHHHh--h----hcCCHHH--HHHHHHHHHHhhcCCCcccccchhhhHHHHHH----HHhcccc
Q 009716 201 MDSGLHPLVPYFTYFISEEVT--R----SLKNFSL--LFALMRVARSLLRNPHIHIEPYLHQMMPSVIT----CLVSKRL 268 (528)
Q Consensus 201 tD~gL~qLLPYfv~FI~e~V~--~----nl~nl~~--L~~llrmv~ALl~Np~L~LepYLHqLlPsvLT----Cll~k~l 268 (528)
+.+.-.+.-|||-.-|..-+. + |-+|+.. -..||.|| .|-.-..-+-+.++.+.++. |+=+..+
T Consensus 485 s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElI----k~st~~vy~~v~~~~l~il~kl~q~i~~~~l 560 (859)
T KOG1241|consen 485 SNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELI----KNSTDDVYPMVQKLTLVILEKLDQTISSQIL 560 (859)
T ss_pred CCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHH----HcCcHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333334444777666655332 1 2234433 23456544 45555555555555555444 3332233
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCc---hhhhhHHHHHHhhChhhhhhhcccc
Q 009716 269 GNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSL---SQHYGAIQGLAALGPSVVHLLILPN 345 (528)
Q Consensus 269 ~~~~~~~hw~LRd~AA~lL~~I~~kf~~~y~~L~~RI~~tL~k~llDp~k~l---~t~YGAI~GL~aLG~~aVr~lilP~ 345 (528)
+....+.+-.|.+.=...|..|++|.++.....--.|+..|++.|-. .++- ..-++||.+|.+ .+-++
T Consensus 561 ~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d~iM~lflri~~s-~~s~~v~e~a~laV~tl~~--------~Lg~~ 631 (859)
T KOG1241|consen 561 SLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSDQIMGLFLRIFES-KRSAVVHEEAFLAVSTLAE--------SLGKG 631 (859)
T ss_pred cHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHcC-CccccchHHHHHHHHHHHH--------HHhHh
Confidence 33223456667777778899999999999999999999999999875 3443 346777777765 23345
Q ss_pred hHHHHHhhhhhhhhH--hhhhhhhHHHHHHHHHHHHHhhhhhh
Q 009716 346 LELYLKFLEPEMLLE--KQKNEMKRHEAWRVYGALQCAAGLCV 386 (528)
Q Consensus 346 L~~y~~~Le~~l~~~--~~~~~~~r~ea~~v~~all~a~g~~~ 386 (528)
+..|...+.|.|.-. ...+..+-.-|.-+.|=|-+|.+.-+
T Consensus 632 F~kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i 674 (859)
T KOG1241|consen 632 FAKYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDI 674 (859)
T ss_pred HHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhh
Confidence 566666666655421 11222334456666666666666543
No 117
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=49.39 E-value=38 Score=35.72 Aligned_cols=57 Identities=18% Similarity=0.261 Sum_probs=47.6
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHh
Q 009716 8 TIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALN 66 (528)
Q Consensus 8 ~V~~iAes~Gi~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~ 66 (528)
.+..+|+.-|+ .++++++..|++-....++.++++.-|..-.+..+ +|.+||+..+.
T Consensus 175 ~l~~~~~~~g~-~i~~~al~~l~~~~~gdlr~~~~~lekl~~y~~~~-it~~~v~~~~~ 231 (367)
T PRK14970 175 HLAGIAVKEGI-KFEDDALHIIAQKADGALRDALSIFDRVVTFCGKN-ITRQAVTENLN 231 (367)
T ss_pred HHHHHHHHcCC-CCCHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCC-CCHHHHHHHhC
Confidence 56777888999 59999999999999888999988888877776655 99999887764
No 118
>KOG1658 consensus DNA polymerase epsilon, subunit C [Replication, recombination and repair]
Probab=48.58 E-value=15 Score=35.11 Aligned_cols=69 Identities=17% Similarity=0.220 Sum_probs=56.2
Q ss_pred CCCCChHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhccC
Q 009716 1 MSIVPKETIEVIAQSI-GVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRN 69 (528)
Q Consensus 1 Ms~~~~e~V~~iAes~-Gi~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~~n 69 (528)
|+.+|...|+.+-+.= .++-+.+++.+.++.-++-.++++-..+-.+....||+++..-|++.|.+.-+
T Consensus 57 l~rLpL~rik~vvkl~pdl~l~~dea~~l~a~aaelfi~~Ln~~~~~~~q~~k~kt~qr~d~D~ai~~~d 126 (162)
T KOG1658|consen 57 LSRLPLARIKQVVKLDPDLTLLNDEASQLIAKAAELFIQELNDVAYTTAQLRKRKTEQRRDYDTAIEAVD 126 (162)
T ss_pred hhhccHHHHHhhccCCcchhhhhhHHHHHHHHHHHHHHHHHHhccchhHHHHHhhhhhhhcccccccchH
Confidence 4556777776665532 23336789999999999999999999999999999999999999999986643
No 119
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.80 E-value=2.9e+02 Score=31.94 Aligned_cols=161 Identities=15% Similarity=0.091 Sum_probs=100.9
Q ss_pred cccchhhHHHHHHHHhhhcCCHHHHHHHHHHHHHhhcCCCcccccchhhhHHHHHHHHhccccCCCCCCCchHHHHHHHH
Q 009716 206 HPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVAD 285 (528)
Q Consensus 206 ~qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~Np~L~LepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~ 285 (528)
+-=+|-|+..+.|.+..- |...-..++.-+.-|-.=|.+.+-.|+..+++-+++.+ .|++-++|+.+..
T Consensus 162 tFsL~~~ipLL~eriy~~--n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~L---------sD~s~eVr~~~~t 230 (675)
T KOG0212|consen 162 TFSLPEFIPLLRERIYVI--NPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNML---------SDSSDEVRTLTDT 230 (675)
T ss_pred ccCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHh---------cCCcHHHHHHHHH
Confidence 444777787777776543 66666778888888999999999999999999877764 4677799999998
Q ss_pred HHHHHHHHhCCCchh-HHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhChhhhhhhcccchHHHHHhhhhhhhhHhhhh
Q 009716 286 LIASICTRFGHVYQN-LQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLILPNLELYLKFLEPEMLLEKQKN 364 (528)
Q Consensus 286 lL~~I~~kf~~~y~~-L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~~aVr~lilP~L~~y~~~Le~~l~~~~~~~ 364 (528)
+|+.....-.++=.+ =..+++.++...+..+.. + ..--|+.=+.++=+-.=+ -++|++..++..|-|-+.... +
T Consensus 231 ~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ss~~-~-iq~~al~Wi~efV~i~g~-~~l~~~s~il~~iLpc~s~~e--~ 305 (675)
T KOG0212|consen 231 LLSEFLAEIRSSPSSMDYDDMINVLVPHLQSSEP-E-IQLKALTWIQEFVKIPGR-DLLLYLSGILTAILPCLSDTE--E 305 (675)
T ss_pred HHHHHHHHHhcCccccCcccchhhccccccCCcH-H-HHHHHHHHHHHHhcCCCc-chhhhhhhhhhhcccCCCCCc--c
Confidence 887777644333222 234566666655543322 1 122345555555333223 267888888887777664321 1
Q ss_pred hhhHHHHHHHHHHHHHhh
Q 009716 365 EMKRHEAWRVYGALQCAA 382 (528)
Q Consensus 365 ~~~r~ea~~v~~all~a~ 382 (528)
...+.-|..+-|-|+.-+
T Consensus 306 ~~i~~~a~~~n~~l~~l~ 323 (675)
T KOG0212|consen 306 MSIKEYAQMVNGLLLKLV 323 (675)
T ss_pred ccHHHHHHHHHHHHHHHH
Confidence 123333444444444443
No 120
>COG5208 HAP5 CCAAT-binding factor, subunit C [Transcription]
Probab=47.77 E-value=32 Score=34.58 Aligned_cols=67 Identities=18% Similarity=0.253 Sum_probs=57.1
Q ss_pred CChHHHHHHHHH-cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhccCC
Q 009716 4 VPKETIEVIAQS-IGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNV 70 (528)
Q Consensus 4 ~~~e~V~~iAes-~Gi~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~~nv 70 (528)
+|.+-||.+.+. -|+.-++.||--..|.-.|-.|.|+.-.|--.++..||++|.-.||-.|++...+
T Consensus 110 LPlARIkkvMKtdedVkMisaEaPvlFak~~EiFI~ELTmRAW~~ae~NkRRtLQksDia~Av~kSeM 177 (286)
T COG5208 110 LPLARIKKVMKTDEDVKMISAEAPVLFAKITEIFIEELTMRAWINAEENKRRTLQKSDIAAAVKKSEM 177 (286)
T ss_pred CcHHHHHHHHhcccchhheecccchHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHHHHHHHHHHHHHH
Confidence 677777777653 3454578888888999999999999999999999999999999999999987665
No 121
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=47.17 E-value=73 Score=31.50 Aligned_cols=59 Identities=7% Similarity=-0.030 Sum_probs=46.8
Q ss_pred HHHHHcCC---CCCCHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhccC
Q 009716 11 VIAQSIGV---YNLSSDVALALAPDVE---YRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRN 69 (528)
Q Consensus 11 ~iAes~Gi---~~Lsdeaa~~La~dve---yrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~~n 69 (528)
..++..|. ..+++++++.|++... ..|..+...|...+-..+.+.++.+||+.|++..+
T Consensus 203 ~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~~~~a~~~~~~~i~~~~v~~~~~~~~ 267 (269)
T TIGR03015 203 HRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRLLLSAFLEEKREIGGEEVREVIAEID 267 (269)
T ss_pred HHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhh
Confidence 34445564 3689999999998776 46888888888887777888999999999998755
No 122
>KOG1659 consensus Class 2 transcription repressor NC2, alpha subunit (DRAP1) [Transcription]
Probab=46.30 E-value=69 Score=32.18 Aligned_cols=67 Identities=15% Similarity=0.258 Sum_probs=53.5
Q ss_pred CCChHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhccC
Q 009716 3 IVPKETIEVIAQSI-GVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRN 69 (528)
Q Consensus 3 ~~~~e~V~~iAes~-Gi~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~~n 69 (528)
.||..-||.|.++= .|..+...+=-.+...+|.++..|++.+.+..+--.-++|+++++..|+..-+
T Consensus 13 rfp~aRiKKIMQ~dEdIGKvaqavPViisralElFl~~l~~~t~~~t~~~~aKt~s~~hlkq~v~~~~ 80 (224)
T KOG1659|consen 13 RFPPARIKKIMQSDEDIGKVAQAVPVIISRALELFLESLLQKTLEITRSRGAKTVSSSHLKQAVESDP 80 (224)
T ss_pred cCCHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCccccCHHHHHHHHhccc
Confidence 57888888887641 22235555555678899999999999999999999999999999999987643
No 123
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=45.30 E-value=33 Score=36.42 Aligned_cols=61 Identities=11% Similarity=0.108 Sum_probs=47.6
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhccCC
Q 009716 8 TIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNV 70 (528)
Q Consensus 8 ~V~~iAes~Gi~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~~nv 70 (528)
.++.+++..|+ .++++++..+++...-.+|.++...-+....+ +..+|.+||..++.....
T Consensus 186 ~L~~~~~~~g~-~i~~~al~~ia~~s~G~~R~al~~l~~~~~~~-~~~It~~~v~~~l~~~~~ 246 (363)
T PRK14961 186 FLKYILIKESI-DTDEYALKLIAYHAHGSMRDALNLLEHAINLG-KGNINIKNVTDMLGLLNE 246 (363)
T ss_pred HHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-CCCCCHHHHHHHHCCCCH
Confidence 55667778897 59999999999988887888777776666554 678999999988854433
No 124
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=43.88 E-value=1.2e+02 Score=36.62 Aligned_cols=141 Identities=18% Similarity=0.242 Sum_probs=90.3
Q ss_pred HHHHHHHHHHhhcC------CChHHHHHHHHHhhhcCCccccchhhHHHHHHHHh-hhcCCHHHHHHHHHHHHHhhcCCC
Q 009716 173 QLYFDKIRELTVSR------SNSTVFKQALLSLAMDSGLHPLVPYFTYFISEEVT-RSLKNFSLLFALMRVARSLLRNPH 245 (528)
Q Consensus 173 Q~Yf~kIt~a~l~~------~~~~~r~~AL~sL~tD~gL~qLLPYfv~FI~e~V~-~nl~nl~~L~~llrmv~ALl~Np~ 245 (528)
|.||-.|.-.++.. +.....-+||..+=++--.++++|.+-...---+. -.+-|...-...++.+.-++.=-+
T Consensus 862 QRfF~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~ 941 (1030)
T KOG1967|consen 862 QRFFCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESE 941 (1030)
T ss_pred HHHHHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhcc
Confidence 77898888777642 23345667887766666668888877544322111 112233332334455555555555
Q ss_pred cccccchhhhHHHHHHHHhccccCCCCCCCchHHHHHHHHHHHHHHHHhCCCc-hhHHHHHHHHHHHHhcCCCCC
Q 009716 246 IHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVY-QNLQSRVTRTLLHAFLDPTKS 319 (528)
Q Consensus 246 L~LepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~~y-~~L~~RI~~tL~k~llDp~k~ 319 (528)
=-+..|+.-++|.+++. + ....+|--..|+.|=++|..+.++-...| ..-|+.|++.+.+.|-||++-
T Consensus 942 tL~t~~~~Tlvp~lLsl--s----~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRl 1010 (1030)
T KOG1967|consen 942 TLQTEHLSTLVPYLLSL--S----SDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRL 1010 (1030)
T ss_pred ccchHHHhHHHHHHHhc--C----CCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHH
Confidence 55677888888877654 2 22223357899999999999999544433 345788999999999887753
No 125
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=43.60 E-value=49 Score=38.03 Aligned_cols=57 Identities=23% Similarity=0.253 Sum_probs=48.9
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHH
Q 009716 7 ETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSAL 65 (528)
Q Consensus 7 e~V~~iAes~Gi~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL 65 (528)
+.++.+++.-|+ .++++++..|+.-....+|.++++.-|.+.++ ..++|.+||...+
T Consensus 198 ~~L~~i~~kegi-~i~~eAl~lIa~~a~Gdlr~al~~Ldkli~~g-~g~It~e~V~~ll 254 (598)
T PRK09111 198 AHLSRIAAKEGV-EVEDEALALIARAAEGSVRDGLSLLDQAIAHG-AGEVTAEAVRDML 254 (598)
T ss_pred HHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhc-CCCcCHHHHHHHh
Confidence 456778888899 59999999999999999999999888887776 5689999999776
No 126
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=43.30 E-value=56 Score=33.05 Aligned_cols=57 Identities=18% Similarity=0.176 Sum_probs=46.0
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHh
Q 009716 7 ETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALN 66 (528)
Q Consensus 7 e~V~~iAes~Gi~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~ 66 (528)
+.++.+++..|+ .++++++..|++...-.+|.++.+.-+.... ..++|.+||..++.
T Consensus 168 ~~l~~~~~~~~~-~i~~~al~~l~~~~~gd~r~~~~~l~~~~~~--~~~it~~~v~~~~~ 224 (319)
T PRK00440 168 ERLRYIAENEGI-EITDDALEAIYYVSEGDMRKAINALQAAAAT--GKEVTEEAVYKITG 224 (319)
T ss_pred HHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHHHc--CCCCCHHHHHHHhC
Confidence 346777888898 5999999999998888888888877776654 36899999998873
No 127
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=43.24 E-value=3e+02 Score=29.88 Aligned_cols=57 Identities=18% Similarity=0.236 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhChhhhh
Q 009716 278 DLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVH 339 (528)
Q Consensus 278 ~LRd~AA~lL~~I~~kf~~~y~~L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~~aVr 339 (528)
.+++.+...+..++.+ +++++..++..+.+.+.+ .......-.+++.+.+.|.....
T Consensus 392 ~~~~~~~~~i~~ll~~----~~~~~~~~l~~L~~~l~~-~~~~~~~~~~~wilGEy~~~~~~ 448 (526)
T PF01602_consen 392 YVSNEIINVIRDLLSN----NPELREKILKKLIELLED-ISSPEALAAAIWILGEYGELIEN 448 (526)
T ss_dssp GCHCHHHHHHHHHHHH----STTTHHHHHHHHHHHHTS-SSSHHHHHHHHHHHHHHCHHHTT
T ss_pred cccchHHHHHHHHhhc----ChhhhHHHHHHHHHHHHH-hhHHHHHHHHHhhhcccCCcccc
Confidence 4466777777777766 466788888888888876 33334567888888888887655
No 128
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=43.05 E-value=25 Score=26.45 Aligned_cols=42 Identities=24% Similarity=0.412 Sum_probs=29.6
Q ss_pred hhcCCCcccccchhhhHHHHHHHHhccccCCCCCCCchHHHHHHHHHHHHH
Q 009716 240 LLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASI 290 (528)
Q Consensus 240 Ll~Np~L~LepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I 290 (528)
|..+..-.+++|+.+++|.++.++ .|++-.+|..|+..|+.|
T Consensus 14 l~~~~~~~~~~~~~~~~~~L~~~L---------~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 14 LAEGCPELLQPYLPELLPALIPLL---------QDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp TTTTTHHHHHHHHHHHHHHHHHHT---------TSSSHHHHHHHHHHHHCH
T ss_pred HhcccHHHHHHHHHHHHHHHHHHH---------cCCCHHHHHHHHHHHhcC
Confidence 334444567888888888877665 133349999999988765
No 129
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=42.64 E-value=99 Score=30.38 Aligned_cols=92 Identities=14% Similarity=0.362 Sum_probs=61.3
Q ss_pred cCCccccchhhHHHHHHHHhhhcCCHHHHHHHHHHHHHh-hcCCCc--ccccchhhhHHHHHHHHhcccc--CCCCC-CC
Q 009716 202 DSGLHPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSL-LRNPHI--HIEPYLHQMMPSVITCLVSKRL--GNRFS-DN 275 (528)
Q Consensus 202 D~gL~qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~AL-l~Np~L--~LepYLHqLlPsvLTCll~k~l--~~~~~-~~ 275 (528)
-..+-+++|-++.-|-..+. .+|.+.....|++++.| ...+.+ .|-||+.||+| ++.....++. |.... ..
T Consensus 71 ~~kilPvlPqLI~plk~AL~--tr~~~V~~~~L~~Lq~Lv~~~~~vG~aLvPyyrqLLp-~ln~f~~k~~n~gd~i~y~~ 147 (183)
T PF10274_consen 71 GEKILPVLPQLIIPLKRALN--TRDPEVFCATLKALQQLVTSSDMVGEALVPYYRQLLP-VLNLFKNKNVNLGDGIDYRK 147 (183)
T ss_pred hhHHHHHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH-HHHHHHhcccCCCccccccc
Confidence 33466677777666655543 36888888899999888 445555 78999999999 4554444442 22111 24
Q ss_pred chHHHHHHHHHHHHHHHHhCC
Q 009716 276 HWDLRNFVADLIASICTRFGH 296 (528)
Q Consensus 276 hw~LRd~AA~lL~~I~~kf~~ 296 (528)
.=.++|.-...|..+.+.-|.
T Consensus 148 ~~~~~dlI~etL~~lE~~GG~ 168 (183)
T PF10274_consen 148 RKNLGDLIQETLELLERNGGP 168 (183)
T ss_pred ccchhHHHHHHHHHHHHhcCh
Confidence 457888888888877766554
No 130
>PRK06620 hypothetical protein; Validated
Probab=42.25 E-value=62 Score=31.93 Aligned_cols=57 Identities=16% Similarity=0.038 Sum_probs=41.8
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhCCCccCHhhHHHHHh
Q 009716 8 TIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCM---RHAHRTVLTANDVDSALN 66 (528)
Q Consensus 8 ~V~~iAes~Gi~~Lsdeaa~~La~dveyrlreIiqeA~kfm---~hskR~~Lt~~DI~~AL~ 66 (528)
-++..++.-|+ .+++|++..|++..+-.+|++..---+.- ...+ +.+|.+.++.+|+
T Consensus 155 ~l~k~~~~~~l-~l~~ev~~~L~~~~~~d~r~l~~~l~~l~~~~~~~~-~~it~~~~~~~l~ 214 (214)
T PRK06620 155 LIFKHFSISSV-TISRQIIDFLLVNLPREYSKIIEILENINYFALISK-RKITISLVKEVLN 214 (214)
T ss_pred HHHHHHHHcCC-CCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHcC-CCCCHHHHHHHhC
Confidence 46667777888 69999999999999877777665444433 2333 4689988888763
No 131
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=41.91 E-value=1.5e+02 Score=28.01 Aligned_cols=55 Identities=11% Similarity=0.113 Sum_probs=41.5
Q ss_pred CCchHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhh
Q 009716 274 DNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAAL 333 (528)
Q Consensus 274 ~~hw~LRd~AA~lL~~I~~kf~~~y~~L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~aL 333 (528)
|.++.+|..|..+|++++. ..|--.+..++..+.+.+.|++..+.. -|...+..+
T Consensus 36 D~~~~VR~~al~~Ls~Li~---~d~ik~k~~l~~~~l~~l~D~~~~Ir~--~A~~~~~e~ 90 (178)
T PF12717_consen 36 DEDPLVRKTALLVLSHLIL---EDMIKVKGQLFSRILKLLVDENPEIRS--LARSFFSEL 90 (178)
T ss_pred CCCHHHHHHHHHHHHHHHH---cCceeehhhhhHHHHHHHcCCCHHHHH--HHHHHHHHH
Confidence 5678999999999999987 457778888878888888998866554 344444444
No 132
>PRK08727 hypothetical protein; Validated
Probab=41.75 E-value=72 Score=31.66 Aligned_cols=57 Identities=18% Similarity=0.082 Sum_probs=41.6
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhCCCccCHhhHHHHHhc
Q 009716 9 IEVIAQSIGVYNLSSDVALALAPDVEYRVREI---MQEAIKCMRHAHRTVLTANDVDSALNL 67 (528)
Q Consensus 9 V~~iAes~Gi~~Lsdeaa~~La~dveyrlreI---iqeA~kfm~hskR~~Lt~~DI~~AL~~ 67 (528)
++..|+.-|+ .+++++...|++..+-.++.+ ++.....+...+| ++|.+.+...|..
T Consensus 171 L~~~a~~~~l-~l~~e~~~~La~~~~rd~r~~l~~L~~l~~~~~~~~~-~it~~~~~~~l~~ 230 (233)
T PRK08727 171 LRERAQRRGL-ALDEAAIDWLLTHGERELAGLVALLDRLDRESLAAKR-RVTVPFLRRVLEE 230 (233)
T ss_pred HHHHHHHcCC-CCCHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHhh
Confidence 4445555688 699999999999988445554 7766655555555 7999999988753
No 133
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=41.74 E-value=2.3e+02 Score=26.77 Aligned_cols=122 Identities=14% Similarity=0.204 Sum_probs=0.0
Q ss_pred cccch--hhhHHHHHHHHhccccCCCCCCCchHHHHHHHHHHHHHHH----HhC--------------------------
Q 009716 248 IEPYL--HQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICT----RFG-------------------------- 295 (528)
Q Consensus 248 LepYL--HqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~----kf~-------------------------- 295 (528)
++||. .+|++.++.++=+ +..|.+|..+-++|+.|=- +|.
T Consensus 2 v~PY~~yP~LL~~L~~iLk~--------e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~~~~~~~~~~~~~~~~l~~~ 73 (160)
T PF11865_consen 2 VDPYLDYPELLDILLNILKT--------EQSQSIRREALRVLGILGALDPYKHKSIQKSLDSKSSENSNDESTDISLPMM 73 (160)
T ss_pred cchHHHhHHHHHHHHHHHHh--------CCCHHHHHHHHHHhhhccccCcHHHhcccccCCccccccccccchhhHHhhc
Q ss_pred ----CCchhHHHHHHHHHHHHhcCCCCCchhhhh-HHHHHHhhChhhhhhhcccchHHHHHhhhhhhhhHhhhhhhhHHH
Q 009716 296 ----HVYQNLQSRVTRTLLHAFLDPTKSLSQHYG-AIQGLAALGPSVVHLLILPNLELYLKFLEPEMLLEKQKNEMKRHE 370 (528)
Q Consensus 296 ----~~y~~L~~RI~~tL~k~llDp~k~l~t~YG-AI~GL~aLG~~aVr~lilP~L~~y~~~Le~~l~~~~~~~~~~r~e 370 (528)
....---.-++++|.++|. +.++..|+. ++..+..+=..-=..| +|+|+.+...+...+ +..+...|..
T Consensus 74 ~~~~~~ee~y~~vvi~~L~~iL~--D~sLs~~h~~vv~ai~~If~~l~~~c-v~~L~~viP~~l~~i---~~~~~~~~e~ 147 (160)
T PF11865_consen 74 GISPSSEEYYPTVVINALMRILR--DPSLSSHHTAVVQAIMYIFKSLGLKC-VPYLPQVIPIFLRVI---RTCPDSLREF 147 (160)
T ss_pred cCCCchHHHHHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHHHHHhcCcCc-hhHHHHHhHHHHHHH---HhCCHHHHHH
Q ss_pred HHHHHHHHHHhhh
Q 009716 371 AWRVYGALQCAAG 383 (528)
Q Consensus 371 a~~v~~all~a~g 383 (528)
..+-.+.|+.-++
T Consensus 148 ~~~qL~~lv~ivk 160 (160)
T PF11865_consen 148 YFQQLADLVSIVK 160 (160)
T ss_pred HHHHHHHHHHHhC
No 134
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=41.11 E-value=1.5e+02 Score=28.77 Aligned_cols=127 Identities=17% Similarity=0.188 Sum_probs=76.4
Q ss_pred cccchhhhHHHHHHHHhccc-------cCCC--CCCCchHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCC
Q 009716 248 IEPYLHQMMPSVITCLVSKR-------LGNR--FSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTK 318 (528)
Q Consensus 248 LepYLHqLlPsvLTCll~k~-------l~~~--~~~~hw~LRd~AA~lL~~I~~kf~~~y~~L~~RI~~tL~k~llDp~k 318 (528)
|-|+|.+++|.++.=...+. +|+= ..||-..+|..|=.+|..+...+....+ -.-+.......|.| ..
T Consensus 3 i~~~L~~llP~ly~et~v~~elir~V~mGPFKh~vDDGLelRK~ayE~lytlLd~~~~~~~--~~~~~~~v~~GL~D-~~ 79 (169)
T PF08623_consen 3 IRPHLDQLLPNLYAETKVKPELIREVDMGPFKHKVDDGLELRKAAYECLYTLLDTCLSRID--ISEFLDRVEAGLKD-EH 79 (169)
T ss_dssp TTTTHHHHHHHHHHTTS--STTEEEEEETTCEEEEEGGGHHHHHHHHHHHHHHHSTCSSS---HHHHHHHHHHTTSS--H
T ss_pred hHHHHHHHHHHHHHHhccCHHHheeeecCCceeeecCcHHHHHHHHHHHHHHHHHHHHhCC--HHHHHHHHHhhcCC-cH
Confidence 45778889998775544431 3431 2689999999999999999996655443 23446666777777 33
Q ss_pred Cchh-hhhHHHHHHhhChhhhhhhcccchHHHHHhhhhhhhhHhhhhhhhHHHHHHHHHHHHHhh
Q 009716 319 SLSQ-HYGAIQGLAALGPSVVHLLILPNLELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQCAA 382 (528)
Q Consensus 319 ~l~t-~YGAI~GL~aLG~~aVr~lilP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~v~~all~a~ 382 (528)
.+.. -|.-+.=|..+.|..+.. +|..+.+.++..+. .+.+...++.|.+|...++-.++
T Consensus 80 DIk~L~~~~l~kl~~~~p~~v~~----~Ld~l~~~l~~~L~-~k~k~~AvkQE~Ek~~E~~rs~l 139 (169)
T PF08623_consen 80 DIKMLCHLMLSKLAQLAPEEVLQ----RLDSLVEPLRKTLS-KKLKENAVKQEIEKQQELIRSVL 139 (169)
T ss_dssp HHHHHHHHHHHHHHHS-HHHHHH----CCTTTHHHHHHHHH-----TTS-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCHHHHHH----HHHHHHHHHHHHhh-ccCCCCcccccHHHHHHHHHHHH
Confidence 3222 356666677777766654 56677777766665 24444555666666666554444
No 135
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=40.63 E-value=59 Score=36.35 Aligned_cols=57 Identities=16% Similarity=0.078 Sum_probs=48.4
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHH
Q 009716 7 ETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSAL 65 (528)
Q Consensus 7 e~V~~iAes~Gi~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL 65 (528)
+.++.+++..|+ .++++++..|++-.+-.+|.+++..-+.+..+ ..++|.+||..++
T Consensus 185 ~~L~~i~k~egi-~id~~al~~La~~s~G~lr~al~~Ldkl~~~~-~~~It~~~V~~~l 241 (486)
T PRK14953 185 EYLKRICNEEKI-EYEEKALDLLAQASEGGMRDAASLLDQASTYG-EGKVTIKVVEEFL 241 (486)
T ss_pred HHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-CCCcCHHHHHHHh
Confidence 367778889998 69999999999999988999988888877665 5579999999887
No 136
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=40.51 E-value=61 Score=34.91 Aligned_cols=59 Identities=12% Similarity=0.204 Sum_probs=47.7
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hCCCccCHhhHHHHHh
Q 009716 7 ETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRH----AHRTVLTANDVDSALN 66 (528)
Q Consensus 7 e~V~~iAes~Gi~~Lsdeaa~~La~dveyrlreIiqeA~kfm~h----skR~~Lt~~DI~~AL~ 66 (528)
+.++.+++.-|+ .++++++..|++-+.-.++.++++.-|.... ..++++|.+||..++.
T Consensus 193 ~~l~~~~~~~g~-~i~~~al~~l~~~s~g~lr~a~~~L~kl~~~~~~~~~~~~It~~~v~~~v~ 255 (397)
T PRK14955 193 QQLQGICEAEGI-SVDADALQLIGRKAQGSMRDAQSILDQVIAFSVESEGEGSIRYDKVAELLN 255 (397)
T ss_pred HHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccccCCCCccCHHHHHHHHC
Confidence 356667777788 5999999999999999899998888776655 3567999999988773
No 137
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.23 E-value=73 Score=40.23 Aligned_cols=79 Identities=13% Similarity=0.330 Sum_probs=60.4
Q ss_pred hhcCCccccchhhHHHHHHHHhhhcCCHHHHHHHHHHHHHhhcCCCcccccchhhhHHHHHHHHhccccCCCCCCCchHH
Q 009716 200 AMDSGLHPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDL 279 (528)
Q Consensus 200 ~tD~gL~qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~Np~L~LepYLHqLlPsvLTCll~k~l~~~~~~~hw~L 279 (528)
+-.|-+.+|+|.+.+|=.|- |...-..|-.+=.+|+.-+..-++.|+..|+-=+|-- .+++.|+.
T Consensus 991 kl~p~l~kLIPrLyRY~yDP------~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~---------lt~kewRV 1055 (1702)
T KOG0915|consen 991 KLEPYLKKLIPRLYRYQYDP------DKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVN---------LTSKEWRV 1055 (1702)
T ss_pred hhhhHHHHhhHHHhhhccCC------cHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHh---------ccchhHHH
Confidence 34567888999988886542 2334445667888999999999999999887755432 25678999
Q ss_pred HHHHHHHHHHHHHH
Q 009716 280 RNFVADLIASICTR 293 (528)
Q Consensus 280 Rd~AA~lL~~I~~k 293 (528)
|+-+.--|+.+++.
T Consensus 1056 ReasclAL~dLl~g 1069 (1702)
T KOG0915|consen 1056 REASCLALADLLQG 1069 (1702)
T ss_pred HHHHHHHHHHHHcC
Confidence 99999999999985
No 138
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=37.90 E-value=3.5e+02 Score=28.36 Aligned_cols=98 Identities=13% Similarity=0.229 Sum_probs=61.5
Q ss_pred ccccchhhhHHHHHHHHhccccCCCCCCCchHHHHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHhcCCCCCchhhh
Q 009716 247 HIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFG--HVYQNLQSRVTRTLLHAFLDPTKSLSQHY 324 (528)
Q Consensus 247 ~LepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~--~~y~~L~~RI~~tL~k~llDp~k~l~t~Y 324 (528)
+++.+...|+..++.|+ |+ |.. .=+..|+++++.+|-+.| .....+...+...|.+++.|...+...+=
T Consensus 79 ~v~~~~~tL~~~~~k~l--kk-g~~------~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~~~~~L~~~l~d~s~~~~~R~ 149 (309)
T PF05004_consen 79 FVEDRRETLLDALLKSL--KK-GKS------EEQALAARALALLALTLGAGEDSEEIFEELKPVLKRILTDSSASPKARA 149 (309)
T ss_pred HHHHHHHHHHHHHHHHh--cc-CCH------HHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHHHHhCCccchHHHH
Confidence 45555566777777776 21 111 236789999999999966 66788888999999999999876655433
Q ss_pred hHHHHH------HhhChhhhhhhcccchHHHHHhhh
Q 009716 325 GAIQGL------AALGPSVVHLLILPNLELYLKFLE 354 (528)
Q Consensus 325 GAI~GL------~aLG~~aVr~lilP~L~~y~~~Le 354 (528)
.++.+| ..-+.+.+.. ++..+..+|....
T Consensus 150 ~~~~aLai~~fv~~~d~~~~~~-~~~~le~if~~~~ 184 (309)
T PF05004_consen 150 ACLEALAICTFVGGSDEEETEE-LMESLESIFLLSI 184 (309)
T ss_pred HHHHHHHHHHHhhcCChhHHHH-HHHHHHHHHHHHh
Confidence 333222 2223333332 3455665555443
No 139
>PTZ00429 beta-adaptin; Provisional
Probab=37.47 E-value=5.5e+02 Score=30.59 Aligned_cols=76 Identities=11% Similarity=0.085 Sum_probs=53.2
Q ss_pred cccccchhhhHHHHHHHHhccccCCCCCCCchHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhh
Q 009716 246 IHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYG 325 (528)
Q Consensus 246 L~LepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~~y~~L~~RI~~tL~k~llDp~k~l~t~YG 325 (528)
|.+...+-.++++|..|+. +.+=.+|..||-.+.+|.+.+....+ ..++...+.+.+. ++.....+.
T Consensus 132 Ir~~~i~e~l~~~lkk~L~---------D~~pYVRKtAalai~Kly~~~pelv~--~~~~~~~L~~LL~--D~dp~Vv~n 198 (746)
T PTZ00429 132 IRVSSVLEYTLEPLRRAVA---------DPDPYVRKTAAMGLGKLFHDDMQLFY--QQDFKKDLVELLN--DNNPVVASN 198 (746)
T ss_pred CCcHHHHHHHHHHHHHHhc---------CCCHHHHHHHHHHHHHHHhhCccccc--ccchHHHHHHHhc--CCCccHHHH
Confidence 4556666677888888873 34459999999999999987665422 1234444555444 467788889
Q ss_pred HHHHHHhhC
Q 009716 326 AIQGLAALG 334 (528)
Q Consensus 326 AI~GL~aLG 334 (528)
|+..|.++.
T Consensus 199 Al~aL~eI~ 207 (746)
T PTZ00429 199 AAAIVCEVN 207 (746)
T ss_pred HHHHHHHHH
Confidence 999888874
No 140
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=37.18 E-value=82 Score=35.09 Aligned_cols=58 Identities=16% Similarity=0.263 Sum_probs=43.8
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhc
Q 009716 8 TIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (528)
Q Consensus 8 ~V~~iAes~Gi~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~ 67 (528)
.++.+++.-|+ .++++++..|++-..-.+|.++..--+....+. .++|.+||..++..
T Consensus 184 ~L~~i~~~egi-~i~~eal~~Ia~~s~GdlR~aln~Le~l~~~~~-~~It~e~V~~~l~~ 241 (472)
T PRK14962 184 RLQEVAEAEGI-EIDREALSFIAKRASGGLRDALTMLEQVWKFSE-GKITLETVHEALGL 241 (472)
T ss_pred HHHHHHHHcCC-CCCHHHHHHHHHHhCCCHHHHHHHHHHHHHhcC-CCCCHHHHHHHHcC
Confidence 46677777888 699999999999887777777666655554443 34999999988843
No 141
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=36.71 E-value=1.3e+02 Score=31.83 Aligned_cols=49 Identities=14% Similarity=0.074 Sum_probs=40.2
Q ss_pred CCCHHHHHHHHHHHHH------HHHHHHHHHHHHHHHhCCCccCHhhHHHHHhcc
Q 009716 20 NLSSDVALALAPDVEY------RVREIMQEAIKCMRHAHRTVLTANDVDSALNLR 68 (528)
Q Consensus 20 ~Lsdeaa~~La~dvey------rlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~~ 68 (528)
.+++++++.+++-+.. ++.+++..|...+...++.+++.+||..|+...
T Consensus 228 ~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~~ 282 (394)
T PRK00411 228 VVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREGSRKVTEEDVRKAYEKS 282 (394)
T ss_pred CCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 5899999999888843 234777888888888888999999999999876
No 142
>PRK08084 DNA replication initiation factor; Provisional
Probab=36.69 E-value=1.1e+02 Score=30.31 Aligned_cols=57 Identities=21% Similarity=0.223 Sum_probs=41.3
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCccCHhhHHHHHh
Q 009716 9 IEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRH--AHRTVLTANDVDSALN 66 (528)
Q Consensus 9 V~~iAes~Gi~~Lsdeaa~~La~dveyrlreIiqeA~kfm~h--skR~~Lt~~DI~~AL~ 66 (528)
++..|+.-|+ .+++|++..|+...+-.+|++..---+..+. .+.+++|.+.+..+|.
T Consensus 176 l~~~a~~~~~-~l~~~v~~~L~~~~~~d~r~l~~~l~~l~~~~l~~~~~it~~~~k~~l~ 234 (235)
T PRK08084 176 LQLRARLRGF-ELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEILK 234 (235)
T ss_pred HHHHHHHcCC-CCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHc
Confidence 4444555788 6999999999999997777766655554433 2335699998888875
No 143
>COG5162 Transcription initiation factor TFIID, subunit TAF10 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=35.97 E-value=1.8e+02 Score=28.18 Aligned_cols=47 Identities=17% Similarity=0.215 Sum_probs=35.1
Q ss_pred CCChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009716 3 IVPKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMR 49 (528)
Q Consensus 3 ~~~~e~V~~iAes~Gi~~Lsdeaa~~La~dveyrlreIiqeA~kfm~ 49 (528)
.||..-+.-..+..|+.-.+..+.+.|+-.....+..|.++|-++-|
T Consensus 88 liPd~v~DYyl~k~Gf~~~D~rvKkLl~L~aqKFvsDiA~dayqYsr 134 (197)
T COG5162 88 LIPDSVTDYYLEKAGFVTSDQRVKKLLSLLAQKFVSDIAVDAYQYSR 134 (197)
T ss_pred CccHHHHHHHHHhcCceeccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666677788999996666688888887777778887777766654
No 144
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=35.14 E-value=65 Score=37.20 Aligned_cols=57 Identities=14% Similarity=0.258 Sum_probs=48.1
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----CCCccCHhhHHHHH
Q 009716 8 TIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHA----HRTVLTANDVDSAL 65 (528)
Q Consensus 8 ~V~~iAes~Gi~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hs----kR~~Lt~~DI~~AL 65 (528)
.++.+++.-|+ .++++++..|++-+.-.++.++.+.-|.+-.+ .++.+|.+||...+
T Consensus 194 ~L~~i~~~egi-~I~~eal~~La~~s~Gdlr~al~eLeKL~~y~~~~~~~~~It~~~V~~lv 254 (620)
T PRK14954 194 QLQMICRAEGI-QIDADALQLIARKAQGSMRDAQSILDQVIAFSVGSEAEKVIAYQGVAELL 254 (620)
T ss_pred HHHHHHHHcCC-CCCHHHHHHHHHHhCCCHHHHHHHHHHHHHhccccccCCccCHHHHHHHH
Confidence 56677788898 59999999999999999999999988887775 36789998887765
No 145
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=34.59 E-value=1.6e+02 Score=28.15 Aligned_cols=56 Identities=20% Similarity=0.166 Sum_probs=42.0
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhCCCccCHhhHHHHHh
Q 009716 9 IEVIAQSIGVYNLSSDVALALAPDVEY---RVREIMQEAIKCMRHAHRTVLTANDVDSALN 66 (528)
Q Consensus 9 V~~iAes~Gi~~Lsdeaa~~La~dvey---rlreIiqeA~kfm~hskR~~Lt~~DI~~AL~ 66 (528)
++..++..|+ .+++++.+.|+..... .++++++++-.+++..++ +++.+.++..|+
T Consensus 168 l~~~~~~~~~-~~~~~~l~~L~~~~~gn~r~L~~~l~~~~~~~~~~~~-~i~~~~~~~~~~ 226 (226)
T TIGR03420 168 LQSRAARRGL-QLPDEVADYLLRHGSRDMGSLMALLDALDRASLAAKR-KITIPFVKEVLA 226 (226)
T ss_pred HHHHHHHcCC-CCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHhC
Confidence 3445557788 5999999999997653 367778888877777664 699999888763
No 146
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=34.24 E-value=90 Score=35.18 Aligned_cols=60 Identities=12% Similarity=0.161 Sum_probs=48.8
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCccCHhhHHHHHhc
Q 009716 7 ETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAH--RTVLTANDVDSALNL 67 (528)
Q Consensus 7 e~V~~iAes~Gi~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hsk--R~~Lt~~DI~~AL~~ 67 (528)
+.++.+++.-|+ .++++++..|++...--+|.++++--+...++. +..+|.+||+..+..
T Consensus 194 ~~L~~i~~~egi-~ie~eAL~~Ia~~s~GslR~al~~Ldkai~~~~~~~~~It~~~V~~llg~ 255 (507)
T PRK06645 194 KLLEYITKQENL-KTDIEALRIIAYKSEGSARDAVSILDQAASMSAKSDNIISPQVINQMLGL 255 (507)
T ss_pred HHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHCC
Confidence 356778888898 589999999999998889988888877766653 457999999988744
No 147
>COG1938 Archaeal enzymes of ATP-grasp superfamily [General function prediction only]
Probab=34.12 E-value=1e+02 Score=31.56 Aligned_cols=46 Identities=17% Similarity=0.316 Sum_probs=40.8
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 009716 8 TIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRT 54 (528)
Q Consensus 8 ~V~~iAes~Gi~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~ 54 (528)
-|..+.+-+|. +++.|-...-|+.++.+++++.++..+-++|-+|+
T Consensus 192 vve~lnk~~~l-~V~td~L~keAe~i~~~lekl~eq~~~~~~~~~~~ 237 (244)
T COG1938 192 VVEALNKMLGL-NVDTDKLEKEAEEIEEQLEKLAEQLEKEEERVERE 237 (244)
T ss_pred HHHHHHHHhcC-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 46778888999 79999999999999999999999999999886654
No 148
>COG5593 Nucleic-acid-binding protein possibly involved in ribosomal biogenesis [Translation, ribosomal structure and biogenesis]
Probab=34.05 E-value=72 Score=36.30 Aligned_cols=110 Identities=16% Similarity=0.314 Sum_probs=69.6
Q ss_pred hhhHHHHHHHHhhhcCCHHHHHHHHHHHHHhhcCCCcccccchhhhHHHHHHH-----------HhccccCCCCCCCchH
Q 009716 210 PYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITC-----------LVSKRLGNRFSDNHWD 278 (528)
Q Consensus 210 PYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~Np~L~LepYLHqLlPsvLTC-----------ll~k~l~~~~~~~hw~ 278 (528)
||+.+|+-+....|+. .+.++++++|-..|-+++-.-+-.++=-+|+. .+. .+| +
T Consensus 174 k~l~~~~fesflk~l~-----fr~levle~ls~d~i~~Vk~qvv~~VydLL~a~peqe~nLl~L~IN-KlG--------D 239 (821)
T COG5593 174 KYLKQRIFESFLKNLR-----FRVLEVLEVLSHDPIQYVKKQVVRLVYDLLEARPEQEVNLLHLFIN-KLG--------D 239 (821)
T ss_pred hHHHHHHHHHHHHHHH-----HHHHHHHHHhccchHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHH-hhc--------c
Confidence 6888888887766542 34556666666655554443222221111111 111 122 2
Q ss_pred HHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhh
Q 009716 279 LRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAAL 333 (528)
Q Consensus 279 LRd~AA~lL~~I~~kf~~~y~~L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~aL 333 (528)
.|+.-+.--++++-+--...|+++.=|++-.-...+-|+..+.+.|=|++.|...
T Consensus 240 k~~kvsskasY~ilkLe~~hP~mk~VV~d~Iedf~f~pn~~~~s~yyalitLnqt 294 (821)
T COG5593 240 KRDKVSSKASYVILKLELLHPGMKEVVLDGIEDFYFKPNDLFRSRYYALITLNQT 294 (821)
T ss_pred chhhhhhhhhHHHHHHHhcCCchhHHHHhhhhHheeccccccceeeeeehhhHHH
Confidence 3665555556666666677789999999999998899999999999999988754
No 149
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=34.01 E-value=4.5e+02 Score=31.44 Aligned_cols=135 Identities=21% Similarity=0.227 Sum_probs=85.3
Q ss_pred ccchhhHHHHHHHHhhhcCCHHHHHH-HHHHHHHhhcCCC-cccccchhhhHHHHHHHHhccccCCCCCCCchHHHHHHH
Q 009716 207 PLVPYFTYFISEEVTRSLKNFSLLFA-LMRVARSLLRNPH-IHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVA 284 (528)
Q Consensus 207 qLLPYfv~FI~e~V~~nl~nl~~L~~-llrmv~ALl~Np~-L~LepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA 284 (528)
-++|...-||-+.++.- |+..-.. .|-+ -+.+.=|. ..+-|+++|.+|+++.-+..+. .-.||-+|
T Consensus 360 ~Iv~~Vl~Fiee~i~~p--dwr~reaavmAF-GSIl~gp~~~~Lt~iV~qalp~ii~lm~D~s---------l~VkdTaA 427 (859)
T KOG1241|consen 360 DIVPHVLPFIEENIQNP--DWRNREAAVMAF-GSILEGPEPDKLTPIVIQALPSIINLMSDPS---------LWVKDTAA 427 (859)
T ss_pred cchhhhHHHHHHhcCCc--chhhhhHHHHHH-HhhhcCCchhhhhHHHhhhhHHHHHHhcCch---------hhhcchHH
Confidence 46777777777666432 3333322 3333 35555554 4889999999999998764332 24469999
Q ss_pred HHHHHHHHHhCCC--chhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhChhhhhhh-----cccchHHHHHhh
Q 009716 285 DLIASICTRFGHV--YQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLL-----ILPNLELYLKFL 353 (528)
Q Consensus 285 ~lL~~I~~kf~~~--y~~L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~~aVr~l-----ilP~L~~y~~~L 353 (528)
-.+++||+-.... ...+-+-++..|.+-|.|.-+--..-=+|+.||+.=-.++.+.- .-|....+...|
T Consensus 428 wtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~L 503 (859)
T KOG1241|consen 428 WTLGRIADFLPEAIINQELLQSKLSALLEGLNDEPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSL 503 (859)
T ss_pred HHHHHHHhhchhhcccHhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHH
Confidence 9999999743221 23444556677888888877777777799999986555544432 335555555444
No 150
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.13 E-value=1.8e+02 Score=37.22 Aligned_cols=121 Identities=19% Similarity=0.231 Sum_probs=73.7
Q ss_pred cccchhhHHHHHHHHhhhcCCHHHHHHHHHHHHHhhc-CCCcccccchhhhHHHHHHHHhccccCCCCCCCchHHHHHHH
Q 009716 206 HPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLR-NPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVA 284 (528)
Q Consensus 206 ~qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~-Np~L~LepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA 284 (528)
+-+.|-|++-+...+..+ .....-...+.++++.+= |.+++-+.-...+-- ++-|++ .|++-+.|+.||
T Consensus 1521 ~~l~~e~l~~l~~~~~~~-~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~-l~~s~l--------~D~~i~vre~Aa 1590 (1710)
T KOG1851|consen 1521 HHLQPEFLRDLKMLTADS-STWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRK-LLESLL--------NDDQIEVREEAA 1590 (1710)
T ss_pred hhhHHHHHHHHHHHhccc-chHHHHHHHHHHHHHHHHHHhhcccchhHHHHHH-HHHHHH--------cchHHHHHHHHH
Confidence 445677776666533222 234444446677766553 333333333333333 222222 356678999999
Q ss_pred HHHHHHHH-HhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhh---Chhhhhh
Q 009716 285 DLIASICT-RFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAAL---GPSVVHL 340 (528)
Q Consensus 285 ~lL~~I~~-kf~~~y~~L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~aL---G~~aVr~ 340 (528)
.+|+.+.+ .|....+ +..+++.+.+..+.++.....||+.||+|+ =|.+|-.
T Consensus 1591 ~~Lsgl~~~s~~~~~~----~k~d~~~~~~~s~s~~~i~~HgavlgLgA~VlafPy~vP~ 1646 (1710)
T KOG1851|consen 1591 KCLSGLLQGSKFQFVS----DKRDTTSNILQSKSKDEIKAHGAVLGLGAIVLAFPYVVPL 1646 (1710)
T ss_pred HHHHHHHhccccccch----HhhhhhhhhhhhcchHHHHhhhhHHHHHHHHHhccccchh
Confidence 99987765 4444333 677788888888888888899999999987 3344444
No 151
>COG1067 LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones]
Probab=32.80 E-value=1.2e+02 Score=35.24 Aligned_cols=60 Identities=25% Similarity=0.346 Sum_probs=51.7
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHhCCCccCHhhHHHHHhcc
Q 009716 9 IEVIAQSIGVYNLSSDVALALAPDVEYR-------------VREIMQEAIKCMRHAHRTVLTANDVDSALNLR 68 (528)
Q Consensus 9 V~~iAes~Gi~~Lsdeaa~~La~dveyr-------------lreIiqeA~kfm~hskR~~Lt~~DI~~AL~~~ 68 (528)
++.+++.-++..++.+|+..|....+.+ |..++++|.-+++--+++.++++||..|++..
T Consensus 327 ~q~v~~d~~ip~~~~~Av~~li~~a~R~Ag~~~~Ltl~~rdl~~lv~~A~~ia~~~~~~~I~ae~Ve~a~~~~ 399 (647)
T COG1067 327 VQELARDGNIPHLDKDAVEELIREAARRAGDQNKLTLRLRDLGNLVREAGDIAVSEGRKLITAEDVEEALQKR 399 (647)
T ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHHhccccceeccCHHHHHHHHHHhhHHHhcCCcccCcHHHHHHHHHhh
Confidence 4566677789999999999999888753 67899999999999999999999999999883
No 152
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=32.67 E-value=1.7e+02 Score=29.62 Aligned_cols=60 Identities=12% Similarity=0.168 Sum_probs=43.3
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhCCCccCHhhHHHHHhcc
Q 009716 8 TIEVIAQSIGVYNLSSDVALALAPDVEYR---VREIMQEAIKCMRHAHRTVLTANDVDSALNLR 68 (528)
Q Consensus 8 ~V~~iAes~Gi~~Lsdeaa~~La~dveyr---lreIiqeA~kfm~hskR~~Lt~~DI~~AL~~~ 68 (528)
-++..|+..|+ .++++++..|++...-. +-.++..+..++...+..+++.+++..++...
T Consensus 167 il~~~~~~~~~-~~~~~al~~ia~~~~G~pR~~~~ll~~~~~~a~~~~~~~it~~~v~~~l~~l 229 (305)
T TIGR00635 167 IVSRSAGLLNV-EIEPEAALEIARRSRGTPRIANRLLRRVRDFAQVRGQKIINRDIALKALEML 229 (305)
T ss_pred HHHHHHHHhCC-CcCHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHh
Confidence 44556667788 69999999999976533 34455555556555566779999999999873
No 153
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=32.61 E-value=91 Score=35.04 Aligned_cols=57 Identities=14% Similarity=0.136 Sum_probs=47.2
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHh
Q 009716 7 ETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALN 66 (528)
Q Consensus 7 e~V~~iAes~Gi~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~ 66 (528)
+.++.+++.-|+ .++++++..|++-..-.+|.++.+.-+++.. .+++|.+||..++.
T Consensus 182 ~~L~~i~~~egi-~i~~~Al~~ia~~s~GdlR~aln~Lekl~~~--~~~It~~~V~~~l~ 238 (504)
T PRK14963 182 GKLRRLLEAEGR-EAEPEALQLVARLADGAMRDAESLLERLLAL--GTPVTRKQVEEALG 238 (504)
T ss_pred HHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHHhc--CCCCCHHHHHHHHC
Confidence 356778888999 5899999999999999999998888887654 45799999988773
No 154
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.34 E-value=3.4e+02 Score=33.73 Aligned_cols=116 Identities=18% Similarity=0.241 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHhhcCCChHHHHH----HHHH-hhhcCCc--cccchhhHHHHHHHHhhhcCCHHHHHHHHHHHHHhh-
Q 009716 170 KELQLYFDKIRELTVSRSNSTVFKQ----ALLS-LAMDSGL--HPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLL- 241 (528)
Q Consensus 170 kElQ~Yf~kIt~a~l~~~~~~~r~~----AL~s-L~tD~gL--~qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl- 241 (528)
.-++.|+..|.+.++| ++..... |+.+ +..-.++ ...++.++.+|...+..|- -+....-++++..++
T Consensus 781 ~~lnefl~~Isagl~g--d~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~s--reI~kaAI~fikvlv~ 856 (1176)
T KOG1248|consen 781 AILNEFLSIISAGLVG--DSTRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASNS--REIAKAAIGFIKVLVY 856 (1176)
T ss_pred HHHHHHHHHHHhhhcc--cHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHH
Confidence 3467788888888775 2322222 3322 2221111 3445555555555555542 333334444444444
Q ss_pred cCCCcccccchhhhHHHHHHHHhccccCCCCCCCchHHHHHHHHHHHHHHHHhCCCc
Q 009716 242 RNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVY 298 (528)
Q Consensus 242 ~Np~L~LepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~~y 298 (528)
.=|-..+-+|+.+|||+++.- .+ +---.+|-..-.||..+|++||..+
T Consensus 857 ~~pe~~l~~~~~~LL~sll~l--s~-------d~k~~~r~Kvr~LlekLirkfg~~e 904 (1176)
T KOG1248|consen 857 KFPEECLSPHLEELLPSLLAL--SH-------DHKIKVRKKVRLLLEKLIRKFGAEE 904 (1176)
T ss_pred cCCHHHHhhhHHHHHHHHHHH--HH-------hhhHHHHHHHHHHHHHHHHHhCHHH
Confidence 346678899999999998873 22 1223789999999999999999643
No 155
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=31.54 E-value=3.8e+02 Score=32.68 Aligned_cols=118 Identities=21% Similarity=0.173 Sum_probs=81.5
Q ss_pred CCcccccchhhhHHHHHHHHhccccCCCCCCCchHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhc----CCCC-
Q 009716 244 PHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFL----DPTK- 318 (528)
Q Consensus 244 p~L~LepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~~y~~L~~RI~~tL~k~ll----Dp~k- 318 (528)
|.=-+-|.+..|+|-+|.|+=-. ....|--+-+++.......+. |++-=..|+...|+ |++.
T Consensus 899 P~~vllp~~~~LlPLLLq~Ls~~---------D~~v~vstl~~i~~~l~~~~t----L~t~~~~Tlvp~lLsls~~~~n~ 965 (1030)
T KOG1967|consen 899 PKQVLLPQFPMLLPLLLQALSMP---------DVIVRVSTLRTIPMLLTESET----LQTEHLSTLVPYLLSLSSDNDNN 965 (1030)
T ss_pred CHHhhccchhhHHHHHHHhcCCC---------ccchhhhHhhhhhHHHHhccc----cchHHHhHHHHHHHhcCCCCCcc
Confidence 33356788888899888886222 224566666777777766544 55555555555444 3333
Q ss_pred CchhhhhHHHHHHhhChhhhhhhcccchHHHHHhhhhhhhhHhhhhhhhHHHHHHHHHH
Q 009716 319 SLSQHYGAIQGLAALGPSVVHLLILPNLELYLKFLEPEMLLEKQKNEMKRHEAWRVYGA 377 (528)
Q Consensus 319 ~l~t~YGAI~GL~aLG~~aVr~lilP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~v~~a 377 (528)
+-..+--|+.||.+|-...=-..++|.-+.....|.+-|.+. .+.+|.||.++.+.
T Consensus 966 ~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDk---KRlVR~eAv~tR~~ 1021 (1030)
T KOG1967|consen 966 MMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDK---KRLVRKEAVDTRQN 1021 (1030)
T ss_pred hhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcH---HHHHHHHHHHHhhh
Confidence 366788999999998774445568899999999999998753 46889999998775
No 156
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=31.08 E-value=1.2e+02 Score=32.53 Aligned_cols=58 Identities=19% Similarity=0.229 Sum_probs=42.7
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhCCCccCHhhHHHHHhc
Q 009716 8 TIEVIAQSIGVYNLSSDVALALAPDVEYRVRE---IMQEAIKCMRHAHRTVLTANDVDSALNL 67 (528)
Q Consensus 8 ~V~~iAes~Gi~~Lsdeaa~~La~dveyrlre---IiqeA~kfm~hskR~~Lt~~DI~~AL~~ 67 (528)
-++..++..|+ .+++|++..||+.++-.+|+ ++.....++...+ +.+|.+.++.+|+.
T Consensus 276 il~~~~~~~~~-~l~~e~l~~ia~~~~~~~r~l~~~l~~l~~~a~~~~-~~it~~~~~~~L~~ 336 (405)
T TIGR00362 276 ILQKKAEEEGL-ELPDEVLEFIAKNIRSNVRELEGALNRLLAYASLTG-KPITLELAKEALKD 336 (405)
T ss_pred HHHHHHHHcCC-CCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHH
Confidence 45667777888 69999999999998876666 4444444554444 45899999998864
No 157
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=30.67 E-value=3.8e+02 Score=31.50 Aligned_cols=124 Identities=22% Similarity=0.247 Sum_probs=0.0
Q ss_pred cchhhhHHHHHHHHhccccCCCCCCCchHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCC--chhhhhHH
Q 009716 250 PYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKS--LSQHYGAI 327 (528)
Q Consensus 250 pYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~~y~~L~~RI~~tL~k~llDp~k~--l~t~YGAI 327 (528)
||+.+|+.-+|.-+=+| ++ ..|..||.+++.|..--.+--.+=-=+=....+---++..-| ++...|||
T Consensus 600 p~l~~ivStiL~~L~~k---~p------~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai 670 (975)
T COG5181 600 PHLSMIVSTILKLLRSK---PP------DVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSILKAI 670 (975)
T ss_pred cchHHHHHHHHHHhcCC---Cc------cHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHH
Q ss_pred HHHHhh-Chh----hhhhhcccchHHHHHhhhhhhhhHh--------------------------------hhhhhhHHH
Q 009716 328 QGLAAL-GPS----VVHLLILPNLELYLKFLEPEMLLEK--------------------------------QKNEMKRHE 370 (528)
Q Consensus 328 ~GL~aL-G~~----aVr~lilP~L~~y~~~Le~~l~~~~--------------------------------~~~~~~r~e 370 (528)
+++..- |-. .++. |+|.|-.++..=.+...... .-|+-.|.-
T Consensus 671 ~~I~sv~~~~~mqpPi~~-ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~ 749 (975)
T COG5181 671 CSIYSVHRFRSMQPPISG-ILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRN 749 (975)
T ss_pred HHHhhhhcccccCCchhh-ccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHh
Q ss_pred HHHHHHHHHHhhh
Q 009716 371 AWRVYGALQCAAG 383 (528)
Q Consensus 371 a~~v~~all~a~g 383 (528)
|..-+|-+-.|+|
T Consensus 750 A~~tfG~Is~aiG 762 (975)
T COG5181 750 ATETFGCISRAIG 762 (975)
T ss_pred hhhhhhhHHhhcC
No 158
>PRK04195 replication factor C large subunit; Provisional
Probab=30.51 E-value=1.1e+02 Score=33.73 Aligned_cols=55 Identities=15% Similarity=0.151 Sum_probs=45.0
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHH
Q 009716 8 TIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSAL 65 (528)
Q Consensus 8 ~V~~iAes~Gi~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL 65 (528)
.++.+++.-|+ .+++++...|++...-.+|.++++..++. .++.+++.+||+..+
T Consensus 168 ~L~~i~~~egi-~i~~eaL~~Ia~~s~GDlR~ain~Lq~~a--~~~~~it~~~v~~~~ 222 (482)
T PRK04195 168 VLKRICRKEGI-ECDDEALKEIAERSGGDLRSAINDLQAIA--EGYGKLTLEDVKTLG 222 (482)
T ss_pred HHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHh--cCCCCCcHHHHHHhh
Confidence 46777888899 59999999999999999999998887733 355689999998765
No 159
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.42 E-value=3e+02 Score=31.19 Aligned_cols=107 Identities=13% Similarity=0.072 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhChhhhhhhcccchHHHHHhhhhhh
Q 009716 278 DLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLILPNLELYLKFLEPEM 357 (528)
Q Consensus 278 ~LRd~AA~lL~~I~~kf~~~y~~L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~~aVr~lilP~L~~y~~~Le~~l 357 (528)
.+|..|++.|+....-.-+..-+-++-+.......|.|+.+ ....--|+.||...-..+.-.-+-|.+..+.-.+.+-.
T Consensus 273 ~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~-~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~ 351 (533)
T KOG2032|consen 273 KSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLN-EEVQLEAMKCLTMVLEKASNDDLESYLLNIALRLRTLF 351 (533)
T ss_pred HHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHHHHHH
Confidence 78999999988876543333445566777777888889888 77778899999987665555556677777766666655
Q ss_pred hhHhhhhhhhHHHHHHHHHHHHHhhhhhhhh
Q 009716 358 LLEKQKNEMKRHEAWRVYGALQCAAGLCVYD 388 (528)
Q Consensus 358 ~~~~~~~~~~r~ea~~v~~all~a~g~~~~~ 388 (528)
..+ +...|.-|+..+|+|..-.|.--.+
T Consensus 352 ~se---~~~~R~aa~~Lfg~L~~l~g~~~e~ 379 (533)
T KOG2032|consen 352 DSE---DDKMRAAAFVLFGALAKLAGGGWEE 379 (533)
T ss_pred Hhc---ChhhhhhHHHHHHHHHHHcCCCchh
Confidence 433 4567889999999999888765443
No 160
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=30.40 E-value=75 Score=36.62 Aligned_cols=57 Identities=12% Similarity=0.180 Sum_probs=45.5
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHH
Q 009716 7 ETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSAL 65 (528)
Q Consensus 7 e~V~~iAes~Gi~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL 65 (528)
+.++.+|+.-|+ .++++++..|++-+.-.+|.++.+.-+.+-.+.++ +|.++|...+
T Consensus 187 ~~L~~ia~~egi-~i~~~al~~La~~s~gdlr~al~~Lekl~~y~~~~-It~~~V~~~l 243 (614)
T PRK14971 187 NHLQYVASKEGI-TAEPEALNVIAQKADGGMRDALSIFDQVVSFTGGN-ITYKSVIENL 243 (614)
T ss_pred HHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCC-ccHHHHHHHh
Confidence 356778888999 69999999999999988999998887776666554 8877776554
No 161
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=29.58 E-value=1.2e+02 Score=33.56 Aligned_cols=56 Identities=20% Similarity=0.214 Sum_probs=42.7
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHH
Q 009716 8 TIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSAL 65 (528)
Q Consensus 8 ~V~~iAes~Gi~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL 65 (528)
.++.+|+.-|+ .++++++..|+..+.-.+|.++.+.-+..--.. ++++.+||..++
T Consensus 188 ~L~~~~~~eg~-~i~~~al~~L~~~s~gdlr~a~~~Lekl~~~~~-~~It~~~V~~l~ 243 (451)
T PRK06305 188 KLALIAKQEGI-ETSREALLPIARAAQGSLRDAESLYDYVVGLFP-KSLDPDSVAKAL 243 (451)
T ss_pred HHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcc-CCcCHHHHHHHH
Confidence 45566677788 489999999999999888888888777653333 448888887766
No 162
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=29.25 E-value=1e+03 Score=29.37 Aligned_cols=136 Identities=18% Similarity=0.141 Sum_probs=76.3
Q ss_pred cchhhHHHHHHHHh------hhcCCHHHHHHHHHHHHHhhcCCCc-ccccchhhhHHHHHHHHhccccCCCCCCCchHHH
Q 009716 208 LVPYFTYFISEEVT------RSLKNFSLLFALMRVARSLLRNPHI-HIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLR 280 (528)
Q Consensus 208 LLPYfv~FI~e~V~------~nl~nl~~L~~llrmv~ALl~Np~L-~LepYLHqLlPsvLTCll~k~l~~~~~~~hw~LR 280 (528)
-+|-++.|+.+-++ ...+|...-.--|+|+-+|. ..| .=.||-.++=- +|.--|.+.+ ..+---||
T Consensus 407 ~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~--~~L~K~s~~~~~mE~-flv~hVfP~f----~s~~g~Lr 479 (1010)
T KOG1991|consen 407 TLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLA--SILLKKSPYKSQMEY-FLVNHVFPEF----QSPYGYLR 479 (1010)
T ss_pred hhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHH--HHHccCCchHHHHHH-HHHHHhhHhh----cCchhHHH
Confidence 34555555555555 33456555555666666655 111 22344333222 2222222222 23334799
Q ss_pred HHHHHHHHHHH-HHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhh-Chhh-hhhhcccchHHHHHhh
Q 009716 281 NFVADLIASIC-TRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAAL-GPSV-VHLLILPNLELYLKFL 353 (528)
Q Consensus 281 d~AA~lL~~I~-~kf~~~y~~L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~aL-G~~a-Vr~lilP~L~~y~~~L 353 (528)
-.|+-+++.+| -.|.. +++-..+...-.+.|.+ ++.++..--|..+|..| ..+. ....+-||++..++.|
T Consensus 480 arac~vl~~~~~~df~d--~~~l~~ale~t~~~l~~-d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~l 552 (1010)
T KOG1991|consen 480 ARACWVLSQFSSIDFKD--PNNLSEALELTHNCLLN-DNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQEL 552 (1010)
T ss_pred HHHHHHHHHHHhccCCC--hHHHHHHHHHHHHHhcc-CCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHH
Confidence 99999999999 57876 44555566666677775 66777788899999887 3322 2123445555555433
No 163
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=29.19 E-value=2.1e+02 Score=29.80 Aligned_cols=62 Identities=19% Similarity=0.264 Sum_probs=44.4
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhCCCccCHhhHHHHHhccCC
Q 009716 8 TIEVIAQSIGVYNLSSDVALALAPDVEYR---VREIMQEAIKCMRHAHRTVLTANDVDSALNLRNV 70 (528)
Q Consensus 8 ~V~~iAes~Gi~~Lsdeaa~~La~dveyr---lreIiqeA~kfm~hskR~~Lt~~DI~~AL~~~nv 70 (528)
-++..++..|+ .++++++..|++...-. +..+++.+..++...+..+++.+++..++...++
T Consensus 188 il~~~~~~~~~-~~~~~~~~~ia~~~~G~pR~a~~~l~~~~~~a~~~~~~~I~~~~v~~~l~~~~~ 252 (328)
T PRK00080 188 IVKRSARILGV-EIDEEGALEIARRSRGTPRIANRLLRRVRDFAQVKGDGVITKEIADKALDMLGV 252 (328)
T ss_pred HHHHHHHHcCC-CcCHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCC
Confidence 45667777788 59999999999877543 4455555555555445568999999999976543
No 164
>PRK06893 DNA replication initiation factor; Validated
Probab=28.98 E-value=1.7e+02 Score=28.94 Aligned_cols=58 Identities=19% Similarity=0.149 Sum_probs=39.0
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhCCCccCHhhHHHHHh
Q 009716 8 TIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKC--MRHAHRTVLTANDVDSALN 66 (528)
Q Consensus 8 ~V~~iAes~Gi~~Lsdeaa~~La~dveyrlreIiqeA~kf--m~hskR~~Lt~~DI~~AL~ 66 (528)
-++..|..-|+ .+++|+...|++..+-.+|.+..---+. +.-...+++|...|+.+|.
T Consensus 169 iL~~~a~~~~l-~l~~~v~~~L~~~~~~d~r~l~~~l~~l~~~~~~~~~~it~~~v~~~L~ 228 (229)
T PRK06893 169 VLQRNAYQRGI-ELSDEVANFLLKRLDRDMHTLFDALDLLDKASLQAQRKLTIPFVKEILG 228 (229)
T ss_pred HHHHHHHHcCC-CCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHhc
Confidence 34556667788 7999999999999985555544332222 2223223799999998875
No 165
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=28.46 E-value=1.2e+02 Score=35.08 Aligned_cols=56 Identities=16% Similarity=0.156 Sum_probs=44.6
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHH
Q 009716 8 TIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSAL 65 (528)
Q Consensus 8 ~V~~iAes~Gi~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL 65 (528)
.++.+++.-|+ .++++++..|++-..-.+|.+++..-+.... ...++|.+||..++
T Consensus 186 ~L~~il~~egi-~id~eal~lIA~~s~GdlR~Al~lLeqll~~-g~~~It~d~V~~~l 241 (624)
T PRK14959 186 HLTKVLGREGV-DYDPAAVRLIARRAAGSVRDSMSLLGQVLAL-GESRLTIDGARGVL 241 (624)
T ss_pred HHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh-cCCCcCHHHHHHHh
Confidence 45667777888 5999999999998888888888877676644 44589999999887
No 166
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=27.74 E-value=61 Score=35.83 Aligned_cols=37 Identities=19% Similarity=0.058 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhc
Q 009716 31 PDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (528)
Q Consensus 31 ~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~ 67 (528)
.-.-..|+.|+++|...+.+.+|..++.+|+..|++.
T Consensus 387 g~sgAdI~~i~~eA~~~Alr~~r~~Vt~~D~~~A~~~ 423 (438)
T PTZ00361 387 ELSGADIKAICTEAGLLALRERRMKVTQADFRKAKEK 423 (438)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHH
Confidence 3444668899999999999999999999999999876
No 167
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=27.55 E-value=1.9e+02 Score=25.06 Aligned_cols=66 Identities=21% Similarity=0.128 Sum_probs=48.7
Q ss_pred hHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhChhhhhhhcccch
Q 009716 277 WDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLILPNL 346 (528)
Q Consensus 277 w~LRd~AA~lL~~I~~kf~~~y~~L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~~aVr~lilP~L 346 (528)
-.+|-.+=..|.+++++.+ .-..-.++|+..++..+.|+. -..+-.||.||.+|+..-=+ .++|.|
T Consensus 17 ~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~D--syVYL~aI~~L~~La~~~p~-~vl~~L 82 (92)
T PF10363_consen 17 PPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDED--SYVYLNAIKGLAALADRHPD-EVLPIL 82 (92)
T ss_pred cchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCC--chHHHHHHHHHHHHHHHChH-HHHHHH
Confidence 4689999999999999887 223456899999999998774 23455999999999765433 244443
No 168
>KOG3547 consensus Bestrophin (Best vitelliform macular dystrophy-associated protein) [General function prediction only]
Probab=27.52 E-value=77 Score=35.28 Aligned_cols=68 Identities=15% Similarity=0.204 Sum_probs=55.0
Q ss_pred cccCcHHHHHHHHHHHHHhhcCCChHHHHHHHHHhhhcCCccccchhhHHHHHHHHhhhcCCHHHHHHHHHHHHHhhcCC
Q 009716 165 KHVLSKELQLYFDKIRELTVSRSNSTVFKQALLSLAMDSGLHPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNP 244 (528)
Q Consensus 165 kh~LSkElQ~Yf~kIt~a~l~~~~~~~r~~AL~sL~tD~gL~qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~Np 244 (528)
+..|++++|.+|++++.-|-+..+. - =|..+|-|||..|.+.-.....|+.-...++.++-+.+...
T Consensus 51 R~~l~~~qq~~Fe~~~~~~d~~~~~------------i-PLtFmLGFfVt~Vv~RW~~~f~nig~id~~a~~vs~~i~g~ 117 (450)
T KOG3547|consen 51 RFALTESQQETFEKFVMYCDSRLDF------------I-PLTFMLGFFVTIVVDRWWKQFRNIGWIDNLALLVSAYIPGT 117 (450)
T ss_pred HHhcCHHHHHHHHHHHHHHhccccc------------c-cchHhhhhhHHHHHHHHHHHHhccCchHHHHHHHHHHccCC
Confidence 5679999999999999988543221 1 37889999999999987777788888888889999998884
Q ss_pred C
Q 009716 245 H 245 (528)
Q Consensus 245 ~ 245 (528)
.
T Consensus 118 d 118 (450)
T KOG3547|consen 118 D 118 (450)
T ss_pred c
Confidence 4
No 169
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=27.18 E-value=1.4e+02 Score=33.59 Aligned_cols=62 Identities=13% Similarity=0.069 Sum_probs=48.2
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhccCCC
Q 009716 8 TIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNVE 71 (528)
Q Consensus 8 ~V~~iAes~Gi~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~~nve 71 (528)
.++.+++.-|+ .++++++..|++-..-.+|.++...-+..-.+ ..++|.+||...+....-+
T Consensus 186 ~l~~il~~egi-~~~~~al~~ia~~s~GslR~al~lLdq~ia~~-~~~It~~~V~~~lg~~~~~ 247 (509)
T PRK14958 186 HCQHLLKEENV-EFENAALDLLARAANGSVRDALSLLDQSIAYG-NGKVLIADVKTMLGTIEPL 247 (509)
T ss_pred HHHHHHHHcCC-CCCHHHHHHHHHHcCCcHHHHHHHHHHHHhcC-CCCcCHHHHHHHHCCCCHH
Confidence 45668888899 59999999999998887888877766655554 6789999999887554443
No 170
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=27.08 E-value=1.3e+02 Score=34.30 Aligned_cols=57 Identities=19% Similarity=0.180 Sum_probs=46.1
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHh
Q 009716 8 TIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALN 66 (528)
Q Consensus 8 ~V~~iAes~Gi~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~ 66 (528)
.++.++..-|+ .++++++..|+....-.++.++++.-|++... ..++|.+||...+.
T Consensus 187 ~L~~~a~~egl-~i~~eal~~La~~s~Gdlr~al~~LekL~~y~-~~~It~e~V~~ll~ 243 (585)
T PRK14950 187 HLRKIAAAEGI-NLEPGALEAIARAATGSMRDAENLLQQLATTY-GGEISLSQVQSLLG 243 (585)
T ss_pred HHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-CCCCCHHHHHHHhc
Confidence 45566777788 59999999999999888999988888877654 45799999888773
No 171
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=27.07 E-value=3.3e+02 Score=27.91 Aligned_cols=109 Identities=17% Similarity=0.176 Sum_probs=58.2
Q ss_pred cCCCCCCCchHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhCh-hhhhhhcccch
Q 009716 268 LGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGP-SVVHLLILPNL 346 (528)
Q Consensus 268 l~~~~~~~hw~LRd~AA~lL~~I~~kf~~~y~~L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~-~aVr~lilP~L 346 (528)
+|.-..++....|..|-.+|+.++.+..... |...=++.+..-+.+.-....+.=+|+.||.+|=. ..+. -...
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~--L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~---~~~~ 78 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPDF--LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFS---PESA 78 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhh--ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCC---hhhH
Confidence 4444466788999999999999999887532 44333344444444333344444566777766531 1110 1113
Q ss_pred HHHHHhhhhhhhhHhhhhhhhHHHHHHHHHHHHHhh
Q 009716 347 ELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQCAA 382 (528)
Q Consensus 347 ~~y~~~Le~~l~~~~~~~~~~r~ea~~v~~all~a~ 382 (528)
..+.+.+-......+. ....|..+-++...|+.--
T Consensus 79 ~~i~~~l~~~~~~q~~-~q~~R~~~~~ll~~l~~~~ 113 (262)
T PF14500_consen 79 VKILRSLFQNVDVQSL-PQSTRYAVYQLLDSLLENH 113 (262)
T ss_pred HHHHHHHHHhCChhhh-hHHHHHHHHHHHHHHHHHh
Confidence 3333333333332111 2334666666666666543
No 172
>PF03542 Tuberin: Tuberin; InterPro: IPR018515 Initiation of eukaryotic mRNA transcription requires melting of promoter DNA with the help of the general transcription factors TFIIE and TFIIH. In higher eukaryotes, the general transcription factor TFIIE consists of two subunits: the large alpha subunit (IPR002853 from INTERPRO) and the small beta (IPR003166 from INTERPRO). TFIIE beta has been found to bind to the region where the promoter starts to open to be single-stranded upon transcription initiation by RNA polymerase II. The approximately 120-residue central core domain of TFIIE beta plays a role in double-stranded DNA binding of TFIIE []. The TFIIE beta central core DNA-binding domain consists of three helices with a beta hairpin at the C terminus, resembling the winged helix proteins. It shows a novel double-stranded DNA-binding activity where the DNA-binding surface locates on the opposite side to the previously reported winged helix motif by forming a positively charged furrow []. This domain is found in Tuberin proteins. ; GO: 0005096 GTPase activator activity, 0043547 positive regulation of GTPase activity
Probab=27.05 E-value=5.2e+02 Score=27.94 Aligned_cols=122 Identities=11% Similarity=0.115 Sum_probs=69.1
Q ss_pred CHHHHHHHHHHHHHhhcCCCcccccchhhhHHHHHHHHhccccCCCC--CCCchHHHHHH---HHHHHHHHHHhCCCchh
Q 009716 226 NFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRF--SDNHWDLRNFV---ADLIASICTRFGHVYQN 300 (528)
Q Consensus 226 nl~~L~~llrmv~ALl~Np~L~LepYLHqLlPsvLTCll~k~l~~~~--~~~hw~LRd~A---A~lL~~I~~kf~~~y~~ 300 (528)
|++.+.+++.=.-..++|.+|+...-+.+|.-.+...+-.+....+. ......--|.+ -..|+.++..+..--.+
T Consensus 155 dWeV~s~VL~hLp~qL~Nk~Lf~~~~I~~L~~~Lc~~i~d~~~~~~l~~~p~~~~~~D~~~~~~~~Ls~LisYh~~~~k~ 234 (356)
T PF03542_consen 155 DWEVYSYVLVHLPSQLSNKALFLGADIDQLRNALCSMICDRSFLESLSNKPTGFKRADLQVCVFPVLSALISYHSHFSKQ 234 (356)
T ss_pred CcHHHHHHHHHHHHHhhhhHHhccCcHHHHHHHHHHHHhcccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCHh
Confidence 57777777777777788888877666666665444443222221111 22334444444 45567777666655577
Q ss_pred HHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhCh--hhhhhhcccchHHHHHhhhh
Q 009716 301 LQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGP--SVVHLLILPNLELYLKFLEP 355 (528)
Q Consensus 301 L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~--~aVr~lilP~L~~y~~~Le~ 355 (528)
-+..|+++|...+.+ .. |..|+.+|-- .-+...+.+.|+.++..+..
T Consensus 235 ~qd~iV~~l~~GL~s-~~-------a~~CI~aLtic~~EmP~s~~k~L~~iL~kLs~ 283 (356)
T PF03542_consen 235 EQDEIVRALESGLGS-KT-------AKPCIHALTICCYEMPDSMKKLLPSILLKLSK 283 (356)
T ss_pred HHHHHHHHHHHHhcc-Cc-------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 788999999888764 22 2333333311 12233445566666666543
No 173
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=26.84 E-value=4.6e+02 Score=31.94 Aligned_cols=151 Identities=20% Similarity=0.208 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHhhcCCCcccc-cchhhhHHHHHHHHhccccCCCCCCCchHHHHHHHHHHHHHHHHhCCCchhHHHHHHH
Q 009716 229 LLFALMRVARSLLRNPHIHIE-PYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTR 307 (528)
Q Consensus 229 ~L~~llrmv~ALl~Np~L~Le-pYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~~y~~L~~RI~~ 307 (528)
.+...+.++.-++.|.-=.|- ..+.+.+|+|..|++...--.....-.=.||-+-..-+.++|..++..-.+++ -|++
T Consensus 633 l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~~~~-yImq 711 (1005)
T KOG2274|consen 633 LCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVTLEQLLTWHDEPGHNLW-YIMQ 711 (1005)
T ss_pred hhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHHHhhccCCCccHH-HHHH
Confidence 334445666666777655553 34467899999998663110000011225666666667778877877777743 6777
Q ss_pred HHHHHhcCCCCCchhhhhHHHH--HHhhChhhhhhhcccchHHHHHhhhhhhhhHhhhhhhhHHHHHHHHHHHHHhhhhh
Q 009716 308 TLLHAFLDPTKSLSQHYGAIQG--LAALGPSVVHLLILPNLELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQCAAGLC 385 (528)
Q Consensus 308 tL~k~llDp~k~l~t~YGAI~G--L~aLG~~aVr~lilP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~v~~all~a~g~~ 385 (528)
.+. .|+||..+=.+- |.+| +..|=.++=+ -+-||+..+++.+-. ++...|--+|..-|+-+.+..
T Consensus 712 V~s-qLLdp~~sds~a--~~VG~lV~tLit~a~~-el~~n~d~IL~Avis---------rmq~ae~lsviQsLi~VfahL 778 (1005)
T KOG2274|consen 712 VLS-QLLDPETSDSAA--AFVGPLVLTLITHASS-ELGPNLDQILRAVIS---------RLQQAETLSVIQSLIMVFAHL 778 (1005)
T ss_pred HHH-HHcCCccchhHH--HHHhHHHHHHHHHHHH-HhchhHHHHHHHHHH---------HHHHhhhHHHHHHHHHHHHHH
Confidence 776 778998775441 1222 1111111111 145566555544333 344567788999999999999
Q ss_pred hhhccchh
Q 009716 386 VYDRLKTV 393 (528)
Q Consensus 386 ~~~~~~~~ 393 (528)
.+..++.+
T Consensus 779 ~~t~~~~~ 786 (1005)
T KOG2274|consen 779 VHTDLDQL 786 (1005)
T ss_pred hhCCHHHH
Confidence 99999888
No 174
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=26.66 E-value=1.4e+02 Score=34.02 Aligned_cols=57 Identities=14% Similarity=0.163 Sum_probs=44.5
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHH
Q 009716 7 ETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSAL 65 (528)
Q Consensus 7 e~V~~iAes~Gi~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL 65 (528)
+.++.+++.-|+ .++++++..|+.-.+-.+|.++...-+.+..+ ..++|.+||..++
T Consensus 185 ~~L~~i~~~egi-~i~~~al~~ia~~s~G~~R~al~~Ldq~~~~~-~~~It~~~V~~vl 241 (559)
T PRK05563 185 ERLKYILDKEGI-EYEDEALRLIARAAEGGMRDALSILDQAISFG-DGKVTYEDALEVT 241 (559)
T ss_pred HHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-cCCCCHHHHHHHh
Confidence 345677888899 59999999999988877777776666665555 5679999998876
No 175
>cd00155 RasGEF Guanine nucleotide exchange factor for Ras-like small GTPases. Small GTP-binding proteins of the Ras superfamily function as molecular switches in fundamental events such as signal transduction, cytoskeleton dynamics and intracellular trafficking. Guanine-nucleotide-exchange factors (GEFs) positively regulate these GTP-binding proteins in response to a variety of signals. GEFs catalyze the dissociation of GDP from the inactive GTP-binding proteins. GTP can then bind and induce structural changes that allow interaction with effectors.
Probab=26.53 E-value=2.6e+02 Score=27.34 Aligned_cols=72 Identities=24% Similarity=0.383 Sum_probs=45.6
Q ss_pred cCcHHHHHHHHHHHHHhhcCCChHHHHHHHHHhhhcCCccccchhhHHHHHHHHhh----------hcCCHHHHHHHHHH
Q 009716 167 VLSKELQLYFDKIRELTVSRSNSTVFKQALLSLAMDSGLHPLVPYFTYFISEEVTR----------SLKNFSLLFALMRV 236 (528)
Q Consensus 167 ~LSkElQ~Yf~kIt~a~l~~~~~~~r~~AL~sL~tD~gL~qLLPYfv~FI~e~V~~----------nl~nl~~L~~llrm 236 (528)
.++.+.+.+|+++.+.+-...+-...+.++++.. .-.+.+||+.-|+.+-+.. .+-|+..+..+.++
T Consensus 118 ~l~~~~~~~~~~l~~l~~~~~n~~~yr~~l~~~~---~~~p~IP~lg~~l~dl~~~~e~~~~~~~~~~iN~~K~~~i~~~ 194 (237)
T cd00155 118 VLSSKLKKLFEELEELVDPSRNFKNYRKLLKSVG---PNPPCVPFLGVYLKDLTFLHEGNPDFLEGNLVNFEKRRKIAEI 194 (237)
T ss_pred HCCHHHHHHHHHHHHHhCcHhhHHHHHHHHHhcC---CCCCCeeehhHHHHHHHHHHccCCccCcCCCccHHHHHHHHHH
Confidence 4778889999999887643334344566776654 1237788888888774322 23356666666555
Q ss_pred HHHhh
Q 009716 237 ARSLL 241 (528)
Q Consensus 237 v~ALl 241 (528)
++.+.
T Consensus 195 i~~~~ 199 (237)
T cd00155 195 LREIR 199 (237)
T ss_pred HHHHH
Confidence 55554
No 176
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=26.42 E-value=1.1e+03 Score=28.28 Aligned_cols=145 Identities=14% Similarity=0.217 Sum_probs=80.9
Q ss_pred cHHHHHHHHHHHHHhhcCCChHHHHHHHHHhhhcCCccccchhhHHHHHHHHhhhcCC--HHHHHHHHHHHHHhhcCCCc
Q 009716 169 SKELQLYFDKIRELTVSRSNSTVFKQALLSLAMDSGLHPLVPYFTYFISEEVTRSLKN--FSLLFALMRVARSLLRNPHI 246 (528)
Q Consensus 169 SkElQ~Yf~kIt~a~l~~~~~~~r~~AL~sL~tD~gL~qLLPYfv~FI~e~V~~nl~n--l~~L~~llrmv~ALl~Np~L 246 (528)
-+.++.||-.|++.+. ..|.+++|-.--=|..-|..++ -...-....+.+-+.+ -..-...||..- .+
T Consensus 50 G~dmssLf~dViK~~~-trd~ElKrL~ylYl~~yak~~P---~~~lLavNti~kDl~d~N~~iR~~AlR~ls------~l 119 (757)
T COG5096 50 GEDMSSLFPDVIKNVA-TRDVELKRLLYLYLERYAKLKP---ELALLAVNTIQKDLQDPNEEIRGFALRTLS------LL 119 (757)
T ss_pred CCChHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHhccCH---HHHHHHHHHHHhhccCCCHHHHHHHHHHHH------hc
Confidence 3457888988888887 4455554433333444444433 3333333344443322 222222344442 23
Q ss_pred ccccchhhhHHHHHHHHhccccCCCCCCCchHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhH
Q 009716 247 HIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGA 326 (528)
Q Consensus 247 ~LepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~~y~~L~~RI~~tL~k~llDp~k~l~t~YGA 326 (528)
....-+-+++++|..|+ .+.|=..|..||-.+..+.+.=.+-|+.+- .-..++.+.... +....=-|
T Consensus 120 ~~~el~~~~~~~ik~~l---------~d~~ayVRk~Aalav~kly~ld~~l~~~~g---~~~~l~~l~~D~-dP~Vi~nA 186 (757)
T COG5096 120 RVKELLGNIIDPIKKLL---------TDPHAYVRKTAALAVAKLYRLDKDLYHELG---LIDILKELVADS-DPIVIANA 186 (757)
T ss_pred ChHHHHHHHHHHHHHHc---------cCCcHHHHHHHHHHHHHHHhcCHhhhhccc---HHHHHHHHhhCC-CchHHHHH
Confidence 44445566777777775 345669999999999999975444444441 222334444323 33334578
Q ss_pred HHHHHhhChh
Q 009716 327 IQGLAALGPS 336 (528)
Q Consensus 327 I~GL~aLG~~ 336 (528)
+.+|..+-++
T Consensus 187 l~sl~~i~~e 196 (757)
T COG5096 187 LASLAEIDPE 196 (757)
T ss_pred HHHHHHhchh
Confidence 8888888777
No 177
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=26.08 E-value=6.4e+02 Score=25.82 Aligned_cols=116 Identities=13% Similarity=0.091 Sum_probs=66.2
Q ss_pred CChHHHHHHHHHhh-------hcCCccccchhhHHHHHHHHhhhcCCHHHHHHHHHHHHHhhcCCCcccccchhhhHHHH
Q 009716 187 SNSTVFKQALLSLA-------MDSGLHPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSV 259 (528)
Q Consensus 187 ~~~~~r~~AL~sL~-------tD~gL~qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~Np~L~LepYLHqLlPsv 259 (528)
+|...|..|+..|+ .|.=-.+=+-.++.|+.+ .+.|...+...++-+.||+..+++.-+- .. .+
T Consensus 11 ed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~----rl~D~~~~~~~l~gl~~L~~~~~~~~~~-~~----~i 81 (262)
T PF14500_consen 11 EDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCS----RLDDHACVQPALKGLLALVKMKNFSPES-AV----KI 81 (262)
T ss_pred CCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHH----HhccHhhHHHHHHHHHHHHhCcCCChhh-HH----HH
Confidence 45556666654443 332122334444555554 4567777777788889999887754443 33 33
Q ss_pred HHHHhccccCCCCCCCchHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhc
Q 009716 260 ITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFL 314 (528)
Q Consensus 260 LTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~~y~~L~~RI~~tL~k~ll 314 (528)
+.-+....-. ...--.-|...=++|..+..+|.....++..-.+..+.+..-
T Consensus 82 ~~~l~~~~~~---q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~ 133 (262)
T PF14500_consen 82 LRSLFQNVDV---QSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLID 133 (262)
T ss_pred HHHHHHhCCh---hhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhc
Confidence 3333321111 111224577777888888888776666666667777777643
No 178
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=26.02 E-value=8.6e+02 Score=26.26 Aligned_cols=195 Identities=18% Similarity=0.208 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHHhhcCCChHHHHHHHH---Hhhh----cCCccccchhhHHHHHHHHhhh--cCCHHHHHHHHHHHHHhh
Q 009716 171 ELQLYFDKIRELTVSRSNSTVFKQALL---SLAM----DSGLHPLVPYFTYFISEEVTRS--LKNFSLLFALMRVARSLL 241 (528)
Q Consensus 171 ElQ~Yf~kIt~a~l~~~~~~~r~~AL~---sL~t----D~gL~qLLPYfv~FI~e~V~~n--l~nl~~L~~llrmv~ALl 241 (528)
+.+.+.+++++.+...+++..+..+++ .|-+ +..+...+-.+..-+ .... -.....+..+.=+++||+
T Consensus 186 ~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~---~~~~~~~~~~~~~~~~~Wi~KaLv 262 (415)
T PF12460_consen 186 DLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSI---SSSEDSELRPQALEILIWITKALV 262 (415)
T ss_pred CHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhh---cccCCcchhHHHHHHHHHHHHHHH
Confidence 555588888888776655544444443 3332 222222222222222 0111 123456667778889998
Q ss_pred cCCCcccccchhhhHHHHHHHHhccccCCCCCCCchHHHHHHHHHHHHHHHHh---------CCCchhHHHHHHHHHHHH
Q 009716 242 RNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRF---------GHVYQNLQSRVTRTLLHA 312 (528)
Q Consensus 242 ~Np~L~LepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf---------~~~y~~L~~RI~~tL~k~ 312 (528)
-..+ |..-+++.-++.++-. ..+...||+-+..|+.-+ ...-.-=|+|+..+....
T Consensus 263 ~R~~----~~~~~~~~~L~~lL~~-----------~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~ 327 (415)
T PF12460_consen 263 MRGH----PLATELLDKLLELLSS-----------PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPK 327 (415)
T ss_pred HcCC----chHHHHHHHHHHHhCC-----------hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHH
Confidence 8665 5555555555554322 367788888887777531 111122267777776665
Q ss_pred hcCCCCC----chhhhhHHHHHHhhChhhhhhhcccchHHHHHhhhhhhhhHhhhhhhhHHHHHHHHHHHHHhhhhhhhh
Q 009716 313 FLDPTKS----LSQHYGAIQGLAALGPSVVHLLILPNLELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQCAAGLCVYD 388 (528)
Q Consensus 313 llDp~k~----l~t~YGAI~GL~aLG~~aVr~lilP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~v~~all~a~g~~~~~ 388 (528)
|.+.-++ ....| +.+|+.+=..+=..++.|+++.++..|-+.+... +...+.-+-.+.-.++.-....+-+
T Consensus 328 L~~~~~~~~~~~k~~y--L~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~---~~~v~~s~L~tL~~~l~~~~~~i~~ 402 (415)
T PF12460_consen 328 LLEGFKEADDEIKSNY--LTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLP---DADVLLSSLETLKMILEEAPELISE 402 (415)
T ss_pred HHHHHhhcChhhHHHH--HHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHcCHHHHHH
Confidence 5543332 22334 4455544445557778899999999888887532 3334444444444444333333333
No 179
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=26.00 E-value=78 Score=33.05 Aligned_cols=75 Identities=24% Similarity=0.304 Sum_probs=43.9
Q ss_pred HHHHHHHHhcCCCCCchhhhhHHHHHHhhCh-hhhhhhc--------cc--chHHHHH---------hhhhhhhhHhhhh
Q 009716 305 VTRTLLHAFLDPTKSLSQHYGAIQGLAALGP-SVVHLLI--------LP--NLELYLK---------FLEPEMLLEKQKN 364 (528)
Q Consensus 305 I~~tL~k~llDp~k~l~t~YGAI~GL~aLG~-~aVr~li--------lP--~L~~y~~---------~Le~~l~~~~~~~ 364 (528)
.+.++.++|-|.+.++..+|-|+.-|-.+|. .+++... ++ .+..++- .|...+.+++ ..
T Consensus 4 ~i~~i~~~L~~~s~~l~~r~rALf~Lr~l~~~~~i~~i~ka~~d~s~llkhe~ay~LgQ~~~~~Av~~l~~vl~des-q~ 82 (289)
T KOG0567|consen 4 EIETIGNILVNKSQPLQNRFRALFNLRNLLGPAAIKAITKAFIDDSALLKHELAYVLGQMQDEDAVPVLVEVLLDES-QE 82 (289)
T ss_pred HHHHHHHHHcCccHHHHHHHHHHHhhhccCChHHHHHHHHhcccchhhhccchhhhhhhhccchhhHHHHHHhcccc-cc
Confidence 3556677777777777888888777777643 4433211 11 1111111 1222333443 36
Q ss_pred hhhHHHHHHHHHHHHH
Q 009716 365 EMKRHEAWRVYGALQC 380 (528)
Q Consensus 365 ~~~r~ea~~v~~all~ 380 (528)
.++||||-.+.|++..
T Consensus 83 pmvRhEAaealga~~~ 98 (289)
T KOG0567|consen 83 PMVRHEAAEALGAIGD 98 (289)
T ss_pred hHHHHHHHHHHHhhcc
Confidence 7899999999999873
No 180
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=25.63 E-value=3.1e+02 Score=28.43 Aligned_cols=49 Identities=14% Similarity=0.072 Sum_probs=38.0
Q ss_pred CCCHHHHHHHHHHHH------HHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhcc
Q 009716 20 NLSSDVALALAPDVE------YRVREIMQEAIKCMRHAHRTVLTANDVDSALNLR 68 (528)
Q Consensus 20 ~Lsdeaa~~La~dve------yrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~~ 68 (528)
.+++++...++.-+. .++..+++.|...+...++.++|.+||..|+...
T Consensus 220 ~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~~ 274 (365)
T TIGR02928 220 VLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEIAEREGAERVTEDHVEKAQEKI 274 (365)
T ss_pred CCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 378888887776554 2355577788888877778899999999999876
No 181
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=25.56 E-value=1.6e+02 Score=33.53 Aligned_cols=57 Identities=16% Similarity=0.210 Sum_probs=45.4
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHH
Q 009716 7 ETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSAL 65 (528)
Q Consensus 7 e~V~~iAes~Gi~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL 65 (528)
+.++.+++.-|+ .++++++..|+....-.+|.++...-+...-+ +..+|.++|...+
T Consensus 183 ~~L~~Il~~EGi-~i~~~Al~~Ia~~s~GdlR~alnlLdqai~~~-~~~It~~~V~~~l 239 (535)
T PRK08451 183 SHLKTILEKEGV-SYEPEALEILARSGNGSLRDTLTLLDQAIIYC-KNAITESKVADML 239 (535)
T ss_pred HHHHHHHHHcCC-CCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhc-CCCCCHHHHHHHh
Confidence 345677788998 58999999999999888888888776666555 5678999888765
No 182
>PF08454 RIH_assoc: RyR and IP3R Homology associated; InterPro: IPR013662 This eukaryotic domain is found in ryanodine receptors (RyR) and inositol 1, 4, 5-trisphosphate receptors (IP3R) which together form a superfamily of homotetrameric ligand-gated intracellular Ca2+ channels []. There seems to be no known function for this domain []. Also see the IP3-binding domain IPR000699 from INTERPRO and IPR003608 from INTERPRO.
Probab=25.35 E-value=2.4e+02 Score=25.22 Aligned_cols=78 Identities=19% Similarity=0.317 Sum_probs=54.0
Q ss_pred CCHHHHHHHHHHHHHhhcCCCcccccchhhhHHHHHHHHhccccCCCCCCCchHHHHHHHHHHHHH---HHHhCCCchhH
Q 009716 225 KNFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASI---CTRFGHVYQNL 301 (528)
Q Consensus 225 ~nl~~L~~llrmv~ALl~Np~L~LepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I---~~kf~~~y~~L 301 (528)
.+...+..++|+.+.|+.|.+..+..|++. +-++ .....+=...+.++..+ .+......-.+
T Consensus 5 ~~~~~~~~ilr~LQLlCEghn~~lQnylR~------------Q~~~---~~s~nlV~~~~~ll~~l~~~~~~~~~~~~~~ 69 (109)
T PF08454_consen 5 QDMEIIQRILRFLQLLCEGHNLDLQNYLRQ------------QPNN---KNSYNLVSETVDLLDSLQEFGKDINSDNIEL 69 (109)
T ss_pred HHHHHHHHHHHHHHHHHCcCCHHHHHHHhc------------CCCC---CCccHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 456778889999999999999999999972 2211 23456666677777766 44444444556
Q ss_pred HHHHHHHHHHHhcCCC
Q 009716 302 QSRVTRTLLHAFLDPT 317 (528)
Q Consensus 302 ~~RI~~tL~k~llDp~ 317 (528)
-..+++||......|-
T Consensus 70 ~~q~~~tL~E~iQGPC 85 (109)
T PF08454_consen 70 IIQCFDTLTEFIQGPC 85 (109)
T ss_pred HHHHHHHHHHHHcCCC
Confidence 6677777777766553
No 183
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=25.27 E-value=2.5e+02 Score=32.65 Aligned_cols=59 Identities=15% Similarity=0.181 Sum_probs=46.5
Q ss_pred HHHHHHHHc----CCCCCCHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHhCCCccCHhhHHHHHh
Q 009716 8 TIEVIAQSI----GVYNLSSDVALALAPDVE-------------YRVREIMQEAIKCMRHAHRTVLTANDVDSALN 66 (528)
Q Consensus 8 ~V~~iAes~----Gi~~Lsdeaa~~La~dve-------------yrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~ 66 (528)
.++.+++.+ ++..+++++...|.+.-. ..|.+++++|..+++..+++.++.+||..|++
T Consensus 323 ~~~~iaqe~~~~G~l~~f~~eAVa~LI~~~~R~ag~r~~lsl~~~~l~~l~r~a~~~a~~~~~~~i~~~~v~~a~~ 398 (637)
T PRK13765 323 LVRFVAQEVKRDGKIPHFDRDAVEEIIREAKRRAGRKGHLTLKLRDLGGLVRVAGDIARSEGAELTTAEHVLEAKK 398 (637)
T ss_pred HHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHhCCccccccCHHHHHHHHHHHHHHHHhhccceecHHHHHHHHH
Confidence 345566665 355789999988887655 23566999999999999999999999999973
No 184
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=24.91 E-value=4.6e+02 Score=22.81 Aligned_cols=82 Identities=20% Similarity=0.150 Sum_probs=56.4
Q ss_pred HHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhChhhhhhhcccchHHHHHhhhhhhhhHhhhh
Q 009716 285 DLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLILPNLELYLKFLEPEMLLEKQKN 364 (528)
Q Consensus 285 ~lL~~I~~kf~~~y~~L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~~aVr~lilP~L~~y~~~Le~~l~~~~~~~ 364 (528)
--|+.++--.+.....-...|+.-.++.|.|++ ...+|=|.-+|..+- ++.+.-++|++..++..|-.-..+ .+
T Consensus 8 i~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d--~rVRy~AcEaL~ni~-k~~~~~~l~~f~~IF~~L~kl~~D---~d 81 (97)
T PF12755_consen 8 IGLAAVAIALGKDISKYLDEILPPVLKCFDDQD--SRVRYYACEALYNIS-KVARGEILPYFNEIFDALCKLSAD---PD 81 (97)
T ss_pred HHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCc--HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHcC---Cc
Confidence 335555555555555566678888888887654 455888888888884 666778899999999888776543 34
Q ss_pred hhhHHHHH
Q 009716 365 EMKRHEAW 372 (528)
Q Consensus 365 ~~~r~ea~ 372 (528)
..+|.-|+
T Consensus 82 ~~Vr~~a~ 89 (97)
T PF12755_consen 82 ENVRSAAE 89 (97)
T ss_pred hhHHHHHH
Confidence 55665554
No 185
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=24.90 E-value=1.7e+02 Score=34.56 Aligned_cols=60 Identities=10% Similarity=0.107 Sum_probs=48.6
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhcc
Q 009716 7 ETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLR 68 (528)
Q Consensus 7 e~V~~iAes~Gi~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~~ 68 (528)
+.++.+++.-|+ .++++++..|++-..-.+|.++...-+.+..+ ..+++.+||...+...
T Consensus 185 ~~L~~Il~kEgi-~id~eAL~~Ia~~A~GslRdAlnLLDqaia~g-~g~It~e~V~~lLG~~ 244 (709)
T PRK08691 185 DHLAHVLDSEKI-AYEPPALQLLGRAAAGSMRDALSLLDQAIALG-SGKVAENDVRQMIGAV 244 (709)
T ss_pred HHHHHHHHHcCC-CcCHHHHHHHHHHhCCCHHHHHHHHHHHHHhc-CCCcCHHHHHHHHccc
Confidence 346778899999 59999999999999888888887776666665 5679999999887543
No 186
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=24.87 E-value=1e+02 Score=36.10 Aligned_cols=63 Identities=13% Similarity=0.191 Sum_probs=49.7
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhccCCC
Q 009716 7 ETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNVE 71 (528)
Q Consensus 7 e~V~~iAes~Gi~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~~nve 71 (528)
+.++.+++.-|+ .++++++..||+...-.+|.++...-+.+..+ +..+|.+||...+-..+.+
T Consensus 184 k~L~~Il~kEgI-~id~eAL~~IA~~S~GdLRdALnLLDQaIayg-~g~IT~edV~~lLG~~d~e 246 (702)
T PRK14960 184 KHLGAILEKEQI-AADQDAIWQIAESAQGSLRDALSLTDQAIAYG-QGAVHHQDVKEMLGLIDRT 246 (702)
T ss_pred HHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-CCCcCHHHHHHHhccCCHH
Confidence 345677888899 69999999999999988888888876666554 6789999998877544433
No 187
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=24.16 E-value=2.4e+02 Score=24.86 Aligned_cols=73 Identities=12% Similarity=0.098 Sum_probs=49.1
Q ss_pred HHHHHHHhcC--CCCCchhhhhHHHHHHhhChhhhhhhcccchHHHHHhhhhhhhhHhhhhhhhHHHHHHHHHHHHHhhh
Q 009716 306 TRTLLHAFLD--PTKSLSQHYGAIQGLAALGPSVVHLLILPNLELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQCAAG 383 (528)
Q Consensus 306 ~~tL~k~llD--p~k~l~t~YGAI~GL~aLG~~aVr~lilP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~v~~all~a~g 383 (528)
+..+...+.| +.++...+==++.+|..|=. .....+-+..+.+...|+..+.. +.-+.+|.++..+++..++
T Consensus 13 l~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~-~~~~~i~~~~pQI~a~L~sal~~-----~~l~~~al~~W~~fi~~L~ 86 (107)
T PF08064_consen 13 LTRFSDVLNDLRGKKPIPEKKRALRSIEELIK-LGGSHISSARPQIMACLQSALEI-----PELREEALSCWNCFIKTLD 86 (107)
T ss_pred HHHHHHHHhccccCCCHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHhCC-----hhhHHHHHHHHHHHHHHCC
Confidence 4455666677 77888877777877776633 33334445677777788877653 2456678888888888766
Q ss_pred h
Q 009716 384 L 384 (528)
Q Consensus 384 ~ 384 (528)
.
T Consensus 87 ~ 87 (107)
T PF08064_consen 87 E 87 (107)
T ss_pred H
Confidence 5
No 188
>KOG1657 consensus CCAAT-binding factor, subunit C (HAP5) [Transcription]
Probab=23.96 E-value=1.2e+02 Score=30.98 Aligned_cols=66 Identities=18% Similarity=0.264 Sum_probs=53.8
Q ss_pred CChHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhccC
Q 009716 4 VPKETIEVIAQSI-GVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRN 69 (528)
Q Consensus 4 ~~~e~V~~iAes~-Gi~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~~n 69 (528)
+|.+-||.|-++= .+.-++.|+.-..+...|+.|.++.-.|--...-++|++|.-.||..|+.-..
T Consensus 75 lPlaRiKkimK~dedv~mI~~Eapvl~aka~E~Fi~elt~~sw~~Tee~~rrtl~~sdia~av~~s~ 141 (236)
T KOG1657|consen 75 LPLARIKKIMKSDEDVSMITAEAPVLFAKACELFITELTLRSWVHTEENKRRTLQKSDIAAAVTQSE 141 (236)
T ss_pred CcHhhccccccccccccccchhHHHHHHHHHHHHHHHHHHHhhhhhcccccccchHHHHHHHhccCC
Confidence 5666666655432 23358889999999999999999999999999999999999999999986543
No 189
>smart00323 RasGAP GTPase-activator protein for Ras-like GTPases. All alpha-helical domain that accelerates the GTPase activity of Ras, thereby "switching" it into an "off" position. Improved domain limits from structure.
Probab=23.88 E-value=3.6e+02 Score=28.37 Aligned_cols=117 Identities=21% Similarity=0.276 Sum_probs=69.5
Q ss_pred cccchhhHHHHHHHHhh----h--cCCHHHHHHHHHHHHHhhcCCCcccccchhhhHHHHHHHHhccccC-C-CC-----
Q 009716 206 HPLVPYFTYFISEEVTR----S--LKNFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLG-N-RF----- 272 (528)
Q Consensus 206 ~qLLPYfv~FI~e~V~~----n--l~nl~~L~~llrmv~ALl~Np~L~LepYLHqLlPsvLTCll~k~l~-~-~~----- 272 (528)
..+.+++-..+..+|.. + .+.......+|.....++. ..||+..+.+++.=++...-+ . .+
T Consensus 69 ~~~~~~L~~li~~Ei~~~~~~~~lfR~Nsl~tk~l~~y~k~~g------~~yL~~~l~~~i~~i~~~~~~~e~dp~k~~~ 142 (344)
T smart00323 69 GRGHPFLRALIDPEVERTDDPNTIFRGNSLATKSMEVYMKLVG------NQYLHTTLKPVLKKIVESKKSCEVDPAKLEG 142 (344)
T ss_pred CcHHHHHHHHHHHHHHcCCcHhhHhhhccHhHHHHHHHHHHHh------HHHHHHHHHHHHHHHHcCCCCCCcChhhcCh
Confidence 55677777788888875 2 1334455556665555554 389998888888777664321 1 11
Q ss_pred ---CCCchHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcC--CCCCchhhhhHHHHHH
Q 009716 273 ---SDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLD--PTKSLSQHYGAIQGLA 331 (528)
Q Consensus 273 ---~~~hw~LRd~AA~lL~~I~~kf~~~y~~L~~RI~~tL~k~llD--p~k~l~t~YGAI~GL~ 331 (528)
..+-..||+++..++..|++.... .|.---.|.+.+.+.+.. |.. ...|.+|-|+.
T Consensus 143 ~~~~~n~~~L~~~~~~~~~~I~~s~~~-~P~~lr~i~~~l~~~~~~kfp~~--~~~~~~v~~fi 203 (344)
T smart00323 143 EDLETNLENLLQYVERLFDAIINSSDR-LPYGLRDICKQLRQAAEKRFPDA--DVIYKAVSSFV 203 (344)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHh-CcHHHHHHHHHHHHHHHHHCCCc--ccchhHHHHHH
Confidence 124568899999999999876544 333333555555555432 121 34555555544
No 190
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=23.61 E-value=1.7e+02 Score=33.38 Aligned_cols=58 Identities=10% Similarity=0.108 Sum_probs=45.4
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhc
Q 009716 8 TIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (528)
Q Consensus 8 ~V~~iAes~Gi~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~ 67 (528)
.++.+++.-|+ .++++++..||+...-.+|.++...-|....+. .++|.+||..++..
T Consensus 186 ~L~~i~~~egi-~id~eAl~lLa~~s~GdlR~alslLdklis~~~-~~It~e~V~~llg~ 243 (563)
T PRK06647 186 MLKKVCLEDQI-KYEDEALKWIAYKSTGSVRDAYTLFDQVVSFSD-SDITLEQIRSKMGL 243 (563)
T ss_pred HHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhcC-CCCCHHHHHHHhCC
Confidence 45667777898 599999999999888888888877766666655 56899998887744
No 191
>COG0588 GpmA Phosphoglycerate mutase 1 [Carbohydrate transport and metabolism]
Probab=23.58 E-value=55 Score=33.13 Aligned_cols=51 Identities=25% Similarity=0.406 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCC----------chhhhhHHHHHH
Q 009716 281 NFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKS----------LSQHYGAIQGLA 331 (528)
Q Consensus 281 d~AA~lL~~I~~kf~~~y~~L~~RI~~tL~k~llDp~k~----------l~t~YGAI~GL~ 331 (528)
..|+++|..=+-.|.-.|.+...|-.+|+.-+|-..... =..||||+.|+.
T Consensus 37 ~~ag~llk~~~~~~dia~TS~L~RAi~T~~i~L~e~d~~~ipv~kswrLNERhYG~LqGln 97 (230)
T COG0588 37 KAAGKLLKEEGLEFDIAYTSVLKRAIKTLNIVLEESDQLWIPVIKSWRLNERHYGALQGLN 97 (230)
T ss_pred HHHHHHHHHcCCCcceeehHHHHHHHHHHHHHhhhhcccCcchhhHHHhhhhhhhhhhcCC
Confidence 457777877777888889999999999998776432211 125999999975
No 192
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=23.27 E-value=4.1e+02 Score=22.84 Aligned_cols=47 Identities=13% Similarity=0.343 Sum_probs=34.5
Q ss_pred cchhhhHHHHHHHHhccccCCCCCCCchHHHHHHHHHHHHHHHHhCCCchhHHHHH
Q 009716 250 PYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRV 305 (528)
Q Consensus 250 pYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~~y~~L~~RI 305 (528)
.|.|.++-.+|+|.+.+. . .-|++.+.++..+|++.--+-.+++.-+
T Consensus 32 ~~~~~vv~~~i~~~le~~--~-------~~~~~~~~Ll~~L~~~~~~~~~~~~~~f 78 (113)
T smart00544 32 EQHHEVVKVLLTCALEEK--R-------TYREMYSVLLSRLCQANVISTKQFEKGF 78 (113)
T ss_pred cchHHHHHHHHHHHHcCC--c-------cHHHHHHHHHHHHHHcCCcCHHHHHHHH
Confidence 488999999999998862 1 4599999999999976444334444333
No 193
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=23.04 E-value=5e+02 Score=32.73 Aligned_cols=200 Identities=19% Similarity=0.236 Sum_probs=0.0
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHh-----------hhcCCc--cccchhhHHHHHH--------HHhhhcCCHHHHHH-
Q 009716 175 YFDKIRELTVSRSNSTVFKQALLSL-----------AMDSGL--HPLVPYFTYFISE--------EVTRSLKNFSLLFA- 232 (528)
Q Consensus 175 Yf~kIt~a~l~~~~~~~r~~AL~sL-----------~tD~gL--~qLLPYfv~FI~e--------~V~~nl~nl~~L~~- 232 (528)
||-. |+..++...|..||..| +.|.-| .-|+|.+-++..+ ..+.|+-.|....+
T Consensus 466 Y~v~----l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~r 541 (1431)
T KOG1240|consen 466 YFVH----LLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYR 541 (1431)
T ss_pred HHHH----HhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHH
Q ss_pred HHHHHHHhhcC-----------CCcccccchhhhHHHHHHHHhccccCCCCCCCchHHHHHHHHHHHHHHHHhCCCchhH
Q 009716 233 LMRVARSLLRN-----------PHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNL 301 (528)
Q Consensus 233 llrmv~ALl~N-----------p~L~LepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~~y~~L 301 (528)
.+..+++|-+| +...-+-|+|+|+-.|=--+++=-.++.+ -.|.-=-+-+..+|.=||..-.+=
T Consensus 542 Fle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~-----~Vkr~Lle~i~~LC~FFGk~ksND 616 (1431)
T KOG1240|consen 542 FLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSPP-----IVKRALLESIIPLCVFFGKEKSND 616 (1431)
T ss_pred HHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCCch-----HHHHHHHHHHHHHHHHhhhccccc
Q ss_pred HHHHHHHHHHHhcCCCCC-chhhhhHHHHHHhh-ChhhhhhhcccchHHHHHhhhhhhhhHhhhhhhhHHHHHHHHHHHH
Q 009716 302 QSRVTRTLLHAFLDPTKS-LSQHYGAIQGLAAL-GPSVVHLLILPNLELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQ 379 (528)
Q Consensus 302 ~~RI~~tL~k~llDp~k~-l~t~YGAI~GL~aL-G~~aVr~lilP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~v~~all 379 (528)
- |+..|...|-|.+.. -++-|-.|.|++.+ |+..+...++|.|-.=+..=|+.. ..++.|+|-
T Consensus 617 ~--iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~Q~ltD~EE~V-------------iv~aL~~ls 681 (1431)
T KOG1240|consen 617 V--ILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQQGLTDGEEAV-------------IVSALGSLS 681 (1431)
T ss_pred c--hHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHHHHHHHHHhccCcchhh-------------HHHHHHHHH
Q ss_pred Hhhhhhhhhccchh--------ccCCC
Q 009716 380 CAAGLCVYDRLKTV--------LLRPP 398 (528)
Q Consensus 380 ~a~g~~~~~~~~~~--------~~~~~ 398 (528)
.-+..-+-++.... |++.|
T Consensus 682 ~Lik~~ll~K~~v~~i~~~v~PlL~hP 708 (1431)
T KOG1240|consen 682 ILIKLGLLRKPAVKDILQDVLPLLCHP 708 (1431)
T ss_pred HHHHhcccchHHHHHHHHhhhhheeCc
No 194
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=22.84 E-value=1.9e+02 Score=34.36 Aligned_cols=75 Identities=19% Similarity=0.220 Sum_probs=55.1
Q ss_pred CCchHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCC-CCCchhhhhHHHHHHhh-ChhhhhhhcccchHHHH
Q 009716 274 DNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDP-TKSLSQHYGAIQGLAAL-GPSVVHLLILPNLELYL 350 (528)
Q Consensus 274 ~~hw~LRd~AA~lL~~I~~kf~~~y~~L~~RI~~tL~k~llDp-~k~l~t~YGAI~GL~aL-G~~aVr~lilP~L~~y~ 350 (528)
+.-.++|+.||+.+..++.+||..+. ...++..++....++ =+.-.|.+=+|.-|+.+ |.+.....++|-+....
T Consensus 529 d~v~~Ir~~aa~~l~~l~~~~G~~w~--~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~ 605 (759)
T KOG0211|consen 529 DHVYSIREAAARNLPALVETFGSEWA--RLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLV 605 (759)
T ss_pred hhHHHHHHHHHHHhHHHHHHhCcchh--HHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhc
Confidence 34568999999999999999997664 334666666666666 34556677777777764 88888888888665543
No 195
>smart00147 RasGEF Guanine nucleotide exchange factor for Ras-like small GTPases.
Probab=22.83 E-value=3.3e+02 Score=26.86 Aligned_cols=71 Identities=21% Similarity=0.359 Sum_probs=45.2
Q ss_pred cCcHHHHHHHHHHHHHhhcCCChHHHHHHHHHhhhcCCccccchhhHHHHHHHHhhh----------cCCHHHHHHHHHH
Q 009716 167 VLSKELQLYFDKIRELTVSRSNSTVFKQALLSLAMDSGLHPLVPYFTYFISEEVTRS----------LKNFSLLFALMRV 236 (528)
Q Consensus 167 ~LSkElQ~Yf~kIt~a~l~~~~~~~r~~AL~sL~tD~gL~qLLPYfv~FI~e~V~~n----------l~nl~~L~~llrm 236 (528)
.|+.+....|+++.+.+-..++-...++++++... .+.+||+-.|+.+-+... +-|+..+..+.++
T Consensus 118 ~l~~~~~~~~~~L~~l~s~~~n~~~yR~~l~~~~~----~p~IP~lg~~l~dl~~~~~~~~~~~~~~~iNf~k~~~i~~~ 193 (242)
T smart00147 118 KLPSKYKKLFEELEELLSPERNFKNYREALSSCNL----PPCVPFLGVLLKDLTFIDEGNPDFLENGLVNFEKRRKIAEI 193 (242)
T ss_pred HCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCC----CCCccchHHHHHHHHHHHccCcccccCCcccHHHHHHHHHH
Confidence 47888888999988865433333344556655432 789999998888744221 2266676666666
Q ss_pred HHHhh
Q 009716 237 ARSLL 241 (528)
Q Consensus 237 v~ALl 241 (528)
++.+.
T Consensus 194 i~~~~ 198 (242)
T smart00147 194 LREIR 198 (242)
T ss_pred HHHHH
Confidence 65554
No 196
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=22.61 E-value=2.3e+02 Score=29.10 Aligned_cols=78 Identities=19% Similarity=0.309 Sum_probs=54.5
Q ss_pred CCChHHHHHHHHHcCCCCCCH---HHHHHHHH-------------HHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHh
Q 009716 3 IVPKETIEVIAQSIGVYNLSS---DVALALAP-------------DVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALN 66 (528)
Q Consensus 3 ~~~~e~V~~iAes~Gi~~Lsd---eaa~~La~-------------dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~ 66 (528)
-+++.||-++++++|.+..+| ..++.|++ +...-+.+++......+++. .+.+..++++.|..
T Consensus 47 ~VS~aTv~Rf~~kLGf~Gf~efk~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~t-~~~l~~~~l~~av~ 125 (281)
T COG1737 47 GVSPATVVRFARKLGFEGFSEFKLALAQELAEGRAQLLREIAEDDGPESILEKLLAANIAALERT-LNLLDEEALERAVE 125 (281)
T ss_pred CCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhhccchhhcccCCCCCHHHHHHHHHHHHHHHHHHH-HHhcCHHHHHHHHH
Confidence 368999999999999998885 44444432 11125677777777777777 45789999999998
Q ss_pred cc-CCCC--ccCCCCCCC
Q 009716 67 LR-NVEP--IYGFASGDS 81 (528)
Q Consensus 67 ~~-nveP--lyGy~s~~p 81 (528)
++ +-+- +||..++.+
T Consensus 126 ~L~~A~rI~~~G~g~S~~ 143 (281)
T COG1737 126 LLAKARRIYFFGLGSSGL 143 (281)
T ss_pred HHHcCCeEEEEEechhHH
Confidence 85 3343 457665543
No 197
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=22.44 E-value=1.6e+02 Score=32.25 Aligned_cols=58 Identities=21% Similarity=0.266 Sum_probs=41.8
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhCCCccCHhhHHHHHhc
Q 009716 8 TIEVIAQSIGVYNLSSDVALALAPDVEYRVREI---MQEAIKCMRHAHRTVLTANDVDSALNL 67 (528)
Q Consensus 8 ~V~~iAes~Gi~~Lsdeaa~~La~dveyrlreI---iqeA~kfm~hskR~~Lt~~DI~~AL~~ 67 (528)
-++..++..|+ .+++|++..||+.+.-.+|++ +.....++...+ +.+|.+.+..+|+.
T Consensus 288 il~~~~~~~~~-~l~~e~l~~ia~~~~~~~R~l~~~l~~l~~~~~~~~-~~it~~~~~~~l~~ 348 (450)
T PRK00149 288 ILKKKAEEEGI-DLPDEVLEFIAKNITSNVRELEGALNRLIAYASLTG-KPITLELAKEALKD 348 (450)
T ss_pred HHHHHHHHcCC-CCCHHHHHHHHcCcCCCHHHHHHHHHHHHHHHHhhC-CCCCHHHHHHHHHH
Confidence 35566666788 599999999999888766664 444444444444 45999999999975
No 198
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=22.44 E-value=2.5e+02 Score=27.16 Aligned_cols=57 Identities=12% Similarity=0.138 Sum_probs=40.3
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhCCCccCHhhHHHHHh
Q 009716 8 TIEVIAQSIGVYNLSSDVALALAPDVEYRVRE---IMQEAIKCMRHAHRTVLTANDVDSALN 66 (528)
Q Consensus 8 ~V~~iAes~Gi~~Lsdeaa~~La~dveyrlre---IiqeA~kfm~hskR~~Lt~~DI~~AL~ 66 (528)
.++.++...|+ .+++++...|+....-.+++ +++.-...+...| +++|...++.+|.
T Consensus 165 ~l~~~~~~~~v-~l~~~al~~L~~~~~gn~~~l~~~l~~l~~~~~~~~-~~i~~~~~~~~l~ 224 (227)
T PRK08903 165 ALKAAAAERGL-QLADEVPDYLLTHFRRDMPSLMALLDALDRYSLEQK-RPVTLPLLREMLA 224 (227)
T ss_pred HHHHHHHHcCC-CCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHh
Confidence 34555667898 69999999999976645555 5555444444555 5899998888874
No 199
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=22.15 E-value=91 Score=32.97 Aligned_cols=33 Identities=21% Similarity=0.162 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhc
Q 009716 35 YRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (528)
Q Consensus 35 yrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~ 67 (528)
..|+.++.+|...+.+.+|..++.+|+..|++.
T Consensus 330 ~dl~~l~~~A~~~a~~~~~~~i~~~d~~~a~~~ 362 (364)
T TIGR01242 330 ADLKAICTEAGMFAIREERDYVTMDDFIKAVEK 362 (364)
T ss_pred HHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHH
Confidence 678999999999999999999999999999864
No 200
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=21.76 E-value=6.8e+02 Score=24.54 Aligned_cols=94 Identities=16% Similarity=0.218 Sum_probs=61.5
Q ss_pred hhhhHHHHHHHHhccccCCCCCCCc-hHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHH
Q 009716 252 LHQMMPSVITCLVSKRLGNRFSDNH-WDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGL 330 (528)
Q Consensus 252 LHqLlPsvLTCll~k~l~~~~~~~h-w~LRd~AA~lL~~I~~kf~~~y~~L~~RI~~tL~k~llDp~k~l~t~YGAI~GL 330 (528)
+|+|=|.++||+...... +.. =-||+--+.+...|..-....++.|..-|+..- .+.+ --|+.-+
T Consensus 1 l~eikplLIsCL~~q~~k----~s~~KiL~~iVs~Va~~v~~~~~~~W~eL~d~Ils~~------~~e~----~kA~~IF 66 (174)
T PF04510_consen 1 LREIKPLLISCLTMQETK----ESDFKILRRIVSHVAYEVFDLQEGGWDELSDCILSLS------ENEP----VKAFHIF 66 (174)
T ss_pred CcchHHHHHHHHHhhccc----HhHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhh------ccch----HHHHHHH
Confidence 588999999999775432 222 247887777777777767778888885554321 1111 1344455
Q ss_pred HhhChhhhhhhcccchHHHHHhhhhhhhh
Q 009716 331 AALGPSVVHLLILPNLELYLKFLEPEMLL 359 (528)
Q Consensus 331 ~aLG~~aVr~lilP~L~~y~~~Le~~l~~ 359 (528)
..|--.....+|.|.+..+...+...+.+
T Consensus 67 ~~L~~~l~~efl~~~~~~L~~~~~~~L~~ 95 (174)
T PF04510_consen 67 ICLPMPLYGEFLIPFMENLLPEISKVLLP 95 (174)
T ss_pred HhCCchhhhhHHHHHHHHHHHHHHHHcCC
Confidence 55652336777888888888887777764
No 201
>cd05136 RasGAP_DAB2IP The DAB2IP family of Ras GTPase-activating proteins includes DAB2IP, nGAP, and Syn GAP. Disabled 2 interactive protein, (DAB2IP; also known as ASK-interacting protein 1 (AIP1)), is a member of the GTPase-activating proteins, down-regulates Ras-mediated signal pathways, and mediates TNF-induced activation of ASK1-JNK signaling pathways. The mechanism by which TNF signaling is coupled to DAB2IP is not known.
Probab=21.63 E-value=9.6e+02 Score=25.28 Aligned_cols=105 Identities=18% Similarity=0.159 Sum_probs=66.4
Q ss_pred ccchhhHHHHHHHHhhhcCCHHHHHH----HHHHHHHhhcCCCcccccchhhhHHHHHHHHhccccCC--CC--------
Q 009716 207 PLVPYFTYFISEEVTRSLKNFSLLFA----LMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGN--RF-------- 272 (528)
Q Consensus 207 qLLPYfv~FI~e~V~~nl~nl~~L~~----llrmv~ALl~Np~L~LepYLHqLlPsvLTCll~k~l~~--~~-------- 272 (528)
...|++...|..+|.....+-..+.+ .-||+.+-... .=..||++.+-+++.-++....+- .|
T Consensus 46 ~~~~~l~~Li~~EI~~~~~~~~~lfRgNsl~tK~~~~y~k~---~G~~YL~~~L~p~I~~ii~~~~~~EiDP~k~~~~~l 122 (309)
T cd05136 46 KAKDFLTDLVMAEVDRCGENERLIFRENTLATKAIEEYLKL---VGQDYLQDTLGEFIRALYESEENCEVDPSKCSASEL 122 (309)
T ss_pred hHHHHHHHHHHHHHHhccccHHHHHhcCcHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHHcCCCCcccCccccCchhH
Confidence 34455666667777655423333322 34555665543 238999999999999888754321 11
Q ss_pred CCCchHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcC
Q 009716 273 SDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLD 315 (528)
Q Consensus 273 ~~~hw~LRd~AA~lL~~I~~kf~~~y~~L~~RI~~tL~k~llD 315 (528)
..+.-.||.++..++..|+..-..-=.+|+ .|.+.+.+.+.+
T Consensus 123 ~~n~~~L~~~~~~~~~~I~~S~~~~P~~lR-~i~~~lr~~~~~ 164 (309)
T cd05136 123 PDHQANLRMCCELAWCKIINSHCVFPAELR-EVFASWRERCED 164 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHhCCHHHH-HHHHHHHHHHhh
Confidence 123457999999999999986654333455 777887777654
No 202
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=21.24 E-value=1.2e+03 Score=26.11 Aligned_cols=127 Identities=18% Similarity=0.206 Sum_probs=76.2
Q ss_pred HHHHHHHhhhcCCccc---cchhhHHHHHHHHhhhcCCHHHHHHHHHHHHHhhcCCCcccccchhhhHHHHHHHHhcccc
Q 009716 192 FKQALLSLAMDSGLHP---LVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRL 268 (528)
Q Consensus 192 r~~AL~sL~tD~gL~q---LLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~Np~L~LepYLHqLlPsvLTCll~k~l 268 (528)
+-++|..|.++..-.+ .+|--+ +.+....+ |.+......+++..++..-.. ..-+.++.+.+..++-..
T Consensus 18 ~~~~L~~l~~~~~~~~~l~~~~~~~--lf~~L~~~--~~e~v~~~~~iL~~~l~~~~~--~~l~~~~~~~L~~gL~h~-- 89 (503)
T PF10508_consen 18 RLEALPELKTELSSSPFLERLPEPV--LFDCLNTS--NREQVELICDILKRLLSALSP--DSLLPQYQPFLQRGLTHP-- 89 (503)
T ss_pred hHHHHHHHHHHHhhhhHHHhchHHH--HHHHHhhc--ChHHHHHHHHHHHHHHhccCH--HHHHHHHHHHHHHHhcCC--
Confidence 4467777777666555 222222 22223222 566666777778888875544 222778888888887442
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHHHhCCCchh-HHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhCh
Q 009716 269 GNRFSDNHWDLRNFVADLIASICTRFGHVYQN-LQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGP 335 (528)
Q Consensus 269 ~~~~~~~hw~LRd~AA~lL~~I~~kf~~~y~~-L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~ 335 (528)
+=.+|..+.+.|.++.+.-+..... ...-+...+...+.|++..... -|+..|..++.
T Consensus 90 -------~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~--~A~~~L~~l~~ 148 (503)
T PF10508_consen 90 -------SPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAK--AAIKALKKLAS 148 (503)
T ss_pred -------CHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHH--HHHHHHHHHhC
Confidence 2289999999988877533221111 1234566677777887776655 56666666644
No 203
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=21.08 E-value=2.1e+02 Score=31.55 Aligned_cols=60 Identities=10% Similarity=0.069 Sum_probs=45.6
Q ss_pred HHHHHHHHcCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----CCccCHhhHHHHHhc
Q 009716 8 TIEVIAQSIGVY-NLSSDVALALAPDVEYRVREIMQEAIKCMRHAH----RTVLTANDVDSALNL 67 (528)
Q Consensus 8 ~V~~iAes~Gi~-~Lsdeaa~~La~dveyrlreIiqeA~kfm~hsk----R~~Lt~~DI~~AL~~ 67 (528)
-++..++..|+. .+++|++..||+...-.+|++..-..++...+. .+.+|.+.+..+++.
T Consensus 283 iL~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~~l~~~a~~~~~~~~it~~~v~~~l~~ 347 (450)
T PRK14087 283 IIKKEIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVSRLNFWSQQNPEEKIITIEIVSDLFRD 347 (450)
T ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHhh
Confidence 455666777863 699999999999999888887777666654442 257999999999864
No 204
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=20.99 E-value=2e+02 Score=31.59 Aligned_cols=58 Identities=21% Similarity=0.190 Sum_probs=46.6
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhCCCccCHhhHHHHHhc
Q 009716 9 IEVIAQSIGVYNLSSDVALALAPDVEYR----VREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (528)
Q Consensus 9 V~~iAes~Gi~~Lsdeaa~~La~dveyr----lreIiqeA~kfm~hskR~~Lt~~DI~~AL~~ 67 (528)
|+.=|+.-+| .|+++|...|+.-=+.. .-+++.-|..++...+++++..+||+.|-+.
T Consensus 370 i~iRa~ee~i-~l~~~Ale~L~~ig~etSLRYa~qLL~pa~iiA~~rg~~~V~~~dVe~a~~l 431 (450)
T COG1224 370 IRIRAKEEDI-ELSDDALEYLTDIGEETSLRYAVQLLTPASIIAKRRGSKRVEVEDVERAKEL 431 (450)
T ss_pred HHHhhhhhcc-ccCHHHHHHHHhhchhhhHHHHHHhccHHHHHHHHhCCCeeehhHHHHHHHH
Confidence 4444677888 59999999998765432 4467778889999999999999999999876
No 205
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=20.69 E-value=2e+02 Score=32.90 Aligned_cols=56 Identities=16% Similarity=0.236 Sum_probs=45.8
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHH
Q 009716 8 TIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSAL 65 (528)
Q Consensus 8 ~V~~iAes~Gi~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL 65 (528)
.++.+++.-|+ .++++++..|+.-..-.+|.++...-+....++ .++|.+||...+
T Consensus 186 ~L~~i~~~egi-~i~~~al~~la~~a~G~lr~al~~Ldqliay~g-~~It~edV~~ll 241 (576)
T PRK14965 186 RLRYIADQEGI-SISDAALALVARKGDGSMRDSLSTLDQVLAFCG-DAVGDDDVAELL 241 (576)
T ss_pred HHHHHHHHhCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcc-CCCCHHHHHHHh
Confidence 45667778898 599999999999999888888888777777666 469999998664
No 206
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=20.46 E-value=2.3e+02 Score=32.81 Aligned_cols=55 Identities=9% Similarity=0.135 Sum_probs=43.1
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHH
Q 009716 8 TIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSA 64 (528)
Q Consensus 8 ~V~~iAes~Gi~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~A 64 (528)
.++.+++.-|+ .++++++..|++-..-.+|.+++..-+....+... ++.+||...
T Consensus 186 ~L~~il~kegi-~Is~eal~~La~lS~GdlR~AlnlLekL~~y~~~~-It~e~V~el 240 (605)
T PRK05896 186 LLKSIAKKEKI-KIEDNAIDKIADLADGSLRDGLSILDQLSTFKNSE-IDIEDINKT 240 (605)
T ss_pred HHHHHHHHcCC-CCCHHHHHHHHHHcCCcHHHHHHHHHHHHhhcCCC-CCHHHHHHH
Confidence 45666677788 59999999999999888888888888877776643 888776663
No 207
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=20.45 E-value=1.7e+03 Score=27.60 Aligned_cols=135 Identities=19% Similarity=0.244 Sum_probs=73.5
Q ss_pred HHHHhhcCCCcccccchhhhHHHHHHHHhc--cccCCCCCCCchHHHHHHHHHHHHHHHHhCCCc----hhHHHHHHHHH
Q 009716 236 VARSLLRNPHIHIEPYLHQMMPSVITCLVS--KRLGNRFSDNHWDLRNFVADLIASICTRFGHVY----QNLQSRVTRTL 309 (528)
Q Consensus 236 mv~ALl~Np~L~LepYLHqLlPsvLTCll~--k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~~y----~~L~~RI~~tL 309 (528)
..+.++.|.- ..+.|+.+.+|.++--++. +...+ |-=+.+|-.|+.+|+..- ..|-+.+.+++
T Consensus 526 ALq~fI~~~~-~~~e~~~~hvp~~mq~lL~L~ne~En----------d~Lt~vme~iV~~fseElsPfA~eL~q~La~~F 594 (1010)
T KOG1991|consen 526 ALQSFISNQE-QADEKVSAHVPPIMQELLKLSNEVEN----------DDLTNVMEKIVCKFSEELSPFAVELCQNLAETF 594 (1010)
T ss_pred HHHHHHhcch-hhhhhHhhhhhHHHHHHHHHHHhcch----------hHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHH
Confidence 3455566654 3345666666666655543 22211 234577888888888765 36777788888
Q ss_pred HHHhcC-CCCCchhhhhHHHHHHhhChhhhhhhcccchHHHHHhhhhhhhhHhhhhhhhHHHHHHHHHHHHHhhh
Q 009716 310 LHAFLD-PTKSLSQHYGAIQGLAALGPSVVHLLILPNLELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQCAAG 383 (528)
Q Consensus 310 ~k~llD-p~k~l~t~YGAI~GL~aLG~~aVr~lilP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~v~~all~a~g 383 (528)
.|++.+ ....-..-=||+.++.-|-.-.-=...+-+.+.+...|++-+.+ ..+-+-.++..-+|.-++..+.
T Consensus 595 ~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~le~~~l~--vi~~iL~~~i~dfyeE~~ei~~ 667 (1010)
T KOG1991|consen 595 LKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQLEPIVLP--VIGFILKNDITDFYEELLEIVS 667 (1010)
T ss_pred HHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH--HHHHHHHHhhHHHHHHHHHHHh
Confidence 888874 22333333455554444322211122355666666666666543 2233444555666665555443
No 208
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=20.38 E-value=2.1e+02 Score=33.22 Aligned_cols=59 Identities=14% Similarity=0.114 Sum_probs=46.5
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhc
Q 009716 7 ETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (528)
Q Consensus 7 e~V~~iAes~Gi~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~ 67 (528)
+.++.+++.-|+ .++++++..|+...+-.+|.++...-+.+..+ ..++|.++|+..|-.
T Consensus 190 ~~L~~i~~~egi-~ie~~AL~~La~~s~GslR~al~lLdq~ia~~-~~~It~~~V~~~Lg~ 248 (618)
T PRK14951 190 EHLTQVLAAENV-PAEPQALRLLARAARGSMRDALSLTDQAIAFG-SGQLQEAAVRQMLGS 248 (618)
T ss_pred HHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-CCCcCHHHHHHHHcC
Confidence 346677788899 69999999999988888888888766666555 457999999887733
No 209
>PF04695 Pex14_N: Peroxisomal membrane anchor protein (Pex14p) conserved region; InterPro: IPR006785 This conserved region defines a group of peroxisomal membrane anchor proteins which bind the PTS1 (peroxisomal targeting signal) receptor and are required for the import of PTS1-containing proteins into peroxisomes. Loss of functional Pex14p results in defects in both the PTS1 and PTS2-dependent import pathways. Deletion analysis of this conserved region implicates it in selective peroxisome degradation. In the majority of members this region is situated at the N terminus of the protein [, ].; GO: 0005777 peroxisome, 0016020 membrane; PDB: 2W85_A 2W84_A 3FF5_B.
Probab=20.34 E-value=57 Score=30.14 Aligned_cols=35 Identities=23% Similarity=0.482 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHhC--------------CCccCHhhHHHHHhccCCCC
Q 009716 38 REIMQEAIKCMRHAH--------------RTVLTANDVDSALNLRNVEP 72 (528)
Q Consensus 38 reIiqeA~kfm~hsk--------------R~~Lt~~DI~~AL~~~nveP 72 (528)
.++|+.|++|++|-+ .|=||.+||+.||+..+-.+
T Consensus 3 e~li~~A~~FL~~p~V~~sp~~~k~~FL~sKGLt~~EI~~al~~a~~~~ 51 (136)
T PF04695_consen 3 EDLIEQAVKFLQDPKVRNSPLEKKIAFLESKGLTEEEIDEALGRAGSPP 51 (136)
T ss_dssp HHHHHHHHHHHCTTTCCCS-HHHHHHHHHHCT--HHHHHHHHHHHT--S
T ss_pred HHHHHHHHHHhCCcccccCCHHHHHHHHHcCCCCHHHHHHHHHhcCCcc
Confidence 367899999998864 34699999999999876643
No 210
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=20.33 E-value=1.1e+03 Score=25.29 Aligned_cols=144 Identities=13% Similarity=0.209 Sum_probs=83.8
Q ss_pred CccccchhhHHHHHHHHhhhc-----CCHHHHHHHHHHHHHhhcCCCc--ccccchhh-hHHHHHHHHhccccCCCCCCC
Q 009716 204 GLHPLVPYFTYFISEEVTRSL-----KNFSLLFALMRVARSLLRNPHI--HIEPYLHQ-MMPSVITCLVSKRLGNRFSDN 275 (528)
Q Consensus 204 gL~qLLPYfv~FI~e~V~~nl-----~nl~~L~~llrmv~ALl~Np~L--~LepYLHq-LlPsvLTCll~k~l~~~~~~~ 275 (528)
.++.=++.|++||..-+.... .+.......+|+.-.++.||.| .|..=... ++--.+.++..... +
T Consensus 32 ~l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~~~l~~d~~~~~i~~~i~~l~~~~~-~----- 105 (372)
T PF12231_consen 32 ALQDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIVSTLSDDFASFIIDHSIESLQNPNS-P----- 105 (372)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHHhhCChHHHHHHHHHHHHHHcCCCC-C-----
Confidence 356678899999998887643 2456678899999999999988 33221111 22223333333221 1
Q ss_pred chHHHHHHHHHHHHHH-HHhCCCc-hhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhChhhhhhhcccchHHHHHhh
Q 009716 276 HWDLRNFVADLIASIC-TRFGHVY-QNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLILPNLELYLKFL 353 (528)
Q Consensus 276 hw~LRd~AA~lL~~I~-~kf~~~y-~~L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~~aVr~lilP~L~~y~~~L 353 (528)
...+...|.-|. .+|+..+ +.-++..+-+.+..+.++-.+....+.++.++..|-.+.-.. ...+...+...|
T Consensus 106 ----K~i~~~~l~~ls~Q~f~~~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~i~~~ll~q~p~~-M~~~~~~W~~~l 180 (372)
T PF12231_consen 106 ----KSICTHYLWCLSDQKFSPKIMTSDRVERLLAALHNIKNRFPSKSIISERLNIYKRLLSQFPQQ-MIKHADIWFPIL 180 (372)
T ss_pred ----HHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 112222222222 3677655 222222233333454666778888899999998887766553 456666666666
Q ss_pred hhhhh
Q 009716 354 EPEML 358 (528)
Q Consensus 354 e~~l~ 358 (528)
-+.+.
T Consensus 181 ~~~l~ 185 (372)
T PF12231_consen 181 FPDLL 185 (372)
T ss_pred HHHHh
Confidence 55554
No 211
>PF08369 PCP_red: Proto-chlorophyllide reductase 57 kD subunit; InterPro: IPR013580 This domain is found in bacteria and plant chloroplast proteins. It often appears at the C-terminal of nitrogenase component 1 type oxidoreductases (IPR000510 from INTERPRO) and sometimes independently in bacterial proteins such as the proto-chlorophyllide reductase subunit B of the cyanobacterium Synechocystis. This domain is also associated with chlorophyllide reductase subunit Z, converts chlorophylls (Chl) into bacteriochlorophylls (BChl) by reducing ring B of the tetrapyrrole.; GO: 0016491 oxidoreductase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process, 0055114 oxidation-reduction process; PDB: 2KRU_A 2L09_A.
Probab=20.22 E-value=1.5e+02 Score=22.39 Aligned_cols=32 Identities=28% Similarity=0.364 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHH-HHHHHHhCCCccCHhhHHHH
Q 009716 33 VEYRVREIMQEA-IKCMRHAHRTVLTANDVDSA 64 (528)
Q Consensus 33 veyrlreIiqeA-~kfm~hskR~~Lt~~DI~~A 64 (528)
+=+.+|.-++.+ =++++..+.+.+|.++++.|
T Consensus 12 iP~fvR~~~r~~~E~~Ar~~G~~~IT~e~v~~A 44 (45)
T PF08369_consen 12 IPFFVRKKLRDAAEKYARERGYDEITVEVVDAA 44 (45)
T ss_dssp S-HHHHHHHHHHHHHHHHHCT-SEE-HHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCeECHHHHHhh
Confidence 445555555444 47999999999999999876
No 212
>COG4996 Predicted phosphatase [General function prediction only]
Probab=20.20 E-value=85 Score=29.70 Aligned_cols=74 Identities=16% Similarity=0.244 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHhCCC--ccCHhhHHHHHh---ccCCCCccCCCCCCCcccee----------------cCCCCcee
Q 009716 36 RVREIMQEAIKCMRHAHRT--VLTANDVDSALN---LRNVEPIYGFASGDSLRFKR----------------ASGLKDLY 94 (528)
Q Consensus 36 rlreIiqeA~kfm~hskR~--~Lt~~DI~~AL~---~~nvePlyGy~s~~pl~f~~----------------~~g~~~ly 94 (528)
++..=+.+-.+.+|+++-- ..+.++-+.|++ .+++...|-|---+|.+++. ...++++.
T Consensus 41 ~L~~~v~~~l~warnsG~i~~~~sWN~~~kA~~aLral~~~~yFhy~ViePhP~K~~ML~~llr~i~~er~~~ikP~~Iv 120 (164)
T COG4996 41 HLFPDVKETLKWARNSGYILGLASWNFEDKAIKALRALDLLQYFHYIVIEPHPYKFLMLSQLLREINTERNQKIKPSEIV 120 (164)
T ss_pred EEcHHHHHHHHHHHhCCcEEEEeecCchHHHHHHHHHhchhhhEEEEEecCCChhHHHHHHHHHHHHHhhccccCcceEE
Confidence 3444456667778887753 567777776554 46777777777666655541 13458999
Q ss_pred eecCcccChHHhhcC
Q 009716 95 YIDDKDVELRNVIET 109 (528)
Q Consensus 95 ~~eD~evdl~~ii~~ 109 (528)
|++|+++-|.+|-+.
T Consensus 121 y~DDR~iH~~~Iwe~ 135 (164)
T COG4996 121 YLDDRRIHFGNIWEY 135 (164)
T ss_pred EEecccccHHHHHHh
Confidence 999999999987543
No 213
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=20.19 E-value=2.2e+02 Score=32.49 Aligned_cols=58 Identities=10% Similarity=0.146 Sum_probs=47.3
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhc
Q 009716 8 TIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (528)
Q Consensus 8 ~V~~iAes~Gi~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~ 67 (528)
.++.+++.-|+ .++++++..|++...-.+|.++...-+.+..+. ..++.+||..++..
T Consensus 186 ~L~~il~~egi-~~e~~Al~~Ia~~s~GdlR~alnlLek~i~~~~-~~It~~~V~~~l~~ 243 (546)
T PRK14957 186 QLKIILAKENI-NSDEQSLEYIAYHAKGSLRDALSLLDQAISFCG-GELKQAQIKQMLGI 243 (546)
T ss_pred HHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcc-CCCCHHHHHHHHcc
Confidence 45677778898 699999999999998888888888777776665 67999999988854
No 214
>cd05392 RasGAP_Neurofibromin_like Neurofibromin-like proteins include the Saccharomyces cerevisiae RasGAP proteins Ira1 and Ira2, the closest homolog of neurofibromin, which is responsible for the human autosomal dominant disease neurofibromatosis type I (NF1). The RasGAP Ira1/2 proteins are negative regulators of the Ras-cAMP signaling pathway and conserved from yeast to human. In yeast Ras proteins are activated by GEFs, and inhibited by two GAPs, Ira1 and Ira2. Ras proteins activate the cAMP/protein kinase A (PKA) pathway, which controls metabolism, stress resistance, growth, and meiosis. Recent studies showed that the kelch proteins Gpb1 and Gpb2 inhibit Ras activity via association with Ira1 and Ira2. Gpb1/2 bind to a conserved C-terminal domain of Ira1/2, and loss of Gpb1/2 results in a destabilization of Ira1 and Ira2, leading to elevated levels of Ras2-GTP and uninhibited cAMP-PKA signaling. Since the Gpb1/2 binding domain on Ira1/2 is conserved in the human neurofibromin prote
Probab=20.13 E-value=8.1e+02 Score=25.59 Aligned_cols=119 Identities=17% Similarity=0.245 Sum_probs=71.3
Q ss_pred cccchhhHHHHHHHHhhhcCCHHHHH----HHHHHHHHhhcCCCcccccchhhhHHHHHHHHhccccC-C-CC-------
Q 009716 206 HPLVPYFTYFISEEVTRSLKNFSLLF----ALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLG-N-RF------- 272 (528)
Q Consensus 206 ~qLLPYfv~FI~e~V~~nl~nl~~L~----~llrmv~ALl~Np~L~LepYLHqLlPsvLTCll~k~l~-~-~~------- 272 (528)
+.+++.|.+.|..+|... .+...+. ...+++.+.+.. .-..||+..+-+++.=++...-. . .|
T Consensus 44 ~~l~~ll~~li~~Ei~~~-~~~~~lfR~Ns~~tkll~~y~r~---~g~~yL~~~L~p~i~~ii~~~~~~eidp~~~~~~~ 119 (323)
T cd05392 44 HLLLPLVKQLIKREVELT-SRETTLFRRNSLATRLLSAYARK---KGQNYLRKTLKPLLRELVDNPESFEVEPKREEPGE 119 (323)
T ss_pred chHHHHHHHHHHHHHHhC-CChhhHhhcCcHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHHhCCCccCcCccccCChH
Confidence 578888888999999754 3333332 245666666652 56899999888888777664321 1 00
Q ss_pred --CCCchHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHH
Q 009716 273 --SDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLA 331 (528)
Q Consensus 273 --~~~hw~LRd~AA~lL~~I~~kf~~~y~~L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~ 331 (528)
..+.=.||+++..++..|+..... .|.---.|.+.+.+.+. .+-....+.+|-|+.
T Consensus 120 ~~~~n~~~L~~~~~~~l~~I~~s~~~-~P~~lr~i~~~l~~~v~--~kfp~~~~~~Vg~fi 177 (323)
T cd05392 120 ELEKNLDLLEKYCQKFIDAIISSLDR-FPPELREICHHIYEVVS--EKFPDSALSAVGSFI 177 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHh-CCHHHHHHHHHHHHHHH--HHCCCchHHHHHHHH
Confidence 113345899999999999875544 33333355555554443 111123455655554
No 215
>PRK00034 gatC aspartyl/glutamyl-tRNA amidotransferase subunit C; Reviewed
Probab=20.12 E-value=2.8e+02 Score=23.60 Aligned_cols=36 Identities=17% Similarity=0.268 Sum_probs=29.2
Q ss_pred CCCCChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHH
Q 009716 1 MSIVPKETIEVIAQSIGVYNLSSDVALALAPDVEYRVR 38 (528)
Q Consensus 1 Ms~~~~e~V~~iAes~Gi~~Lsdeaa~~La~dveyrlr 38 (528)
|. +.++.|+.+|+-+-+ +++++-+..+..+++.-+.
T Consensus 1 M~-i~~e~i~~la~La~l-~l~~ee~~~~~~~l~~il~ 36 (95)
T PRK00034 1 MA-ITREEVKHLAKLARL-ELSEEELEKFAGQLNKILD 36 (95)
T ss_pred CC-CCHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHHHH
Confidence 53 889999999999999 6999988888777665443
No 216
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=20.07 E-value=1.3e+02 Score=27.45 Aligned_cols=27 Identities=11% Similarity=0.287 Sum_probs=22.2
Q ss_pred HHHHHHHhCCCchhHHHHHHHHHHHHh
Q 009716 287 IASICTRFGHVYQNLQSRVTRTLLHAF 313 (528)
Q Consensus 287 L~~I~~kf~~~y~~L~~RI~~tL~k~l 313 (528)
|..+-+.+|-+||++|.|+-+.+.+.=
T Consensus 52 lKe~e~~lgiSYPTvR~rLd~ii~~lg 78 (113)
T PF09862_consen 52 LKEMEKELGISYPTVRNRLDKIIEKLG 78 (113)
T ss_pred HHHHHHHHCCCcHHHHHHHHHHHHHhC
Confidence 566778999999999999888776553
Done!