Query 009716
Match_columns 528
No_of_seqs 177 out of 319
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 11:26:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009716.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009716hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4atg_A TAF6; transcription, TF 100.0 5.8E-59 2E-63 447.5 20.4 183 165-357 2-184 (196)
2 1taf_B TFIID TBP associated fa 99.9 2.5E-24 8.4E-29 174.9 9.8 67 1-67 4-70 (70)
3 2hue_C Histone H4; mini beta s 99.7 5.5E-18 1.9E-22 142.4 7.0 75 3-78 10-84 (84)
4 1id3_B Histone H4; nucleosome 99.7 2.6E-17 9E-22 143.0 8.1 75 3-78 28-102 (102)
5 2yfw_B Histone H4, H4; cell cy 99.6 2E-16 6.8E-21 137.7 7.3 75 3-78 29-103 (103)
6 1tzy_D Histone H4-VI; histone- 99.6 2.5E-16 8.7E-21 137.0 7.7 74 4-78 30-103 (103)
7 1ku5_A HPHA, archaeal histon; 99.2 2.7E-11 9.2E-16 98.1 8.3 67 1-67 4-70 (70)
8 2ly8_A Budding yeast chaperone 99.0 3.5E-10 1.2E-14 100.7 6.7 61 16-77 60-120 (121)
9 1f1e_A Histone fold protein; a 98.9 2.1E-09 7.3E-14 99.6 9.3 72 1-72 2-74 (154)
10 2l5a_A Histone H3-like centrom 98.9 2.7E-10 9.1E-15 111.3 1.8 68 9-77 167-234 (235)
11 1b67_A Protein (histone HMFA); 98.9 9.6E-09 3.3E-13 82.4 9.0 67 2-68 1-67 (68)
12 1taf_A TFIID TBP associated fa 98.8 1.8E-08 6E-13 81.4 8.5 62 7-68 5-66 (68)
13 3b0c_T CENP-T, centromere prot 98.7 1.7E-08 5.9E-13 88.8 7.7 68 3-70 7-74 (111)
14 1f1e_A Histone fold protein; a 98.7 5.4E-08 1.9E-12 90.1 8.6 65 3-67 82-146 (154)
15 1n1j_A NF-YB; histone-like PAI 98.4 8.8E-07 3E-11 75.2 9.0 68 3-70 8-77 (93)
16 3b0c_W CENP-W, centromere prot 98.4 6.4E-07 2.2E-11 73.5 7.7 65 3-67 4-69 (76)
17 4dra_A Centromere protein S; D 98.4 3.4E-07 1.2E-11 80.5 5.5 60 8-67 32-94 (113)
18 3b0b_B CENP-S, centromere prot 98.3 5.1E-07 1.7E-11 78.9 6.1 60 8-67 24-86 (107)
19 2hue_B Histone H3; mini beta s 98.3 1.7E-06 5.7E-11 71.4 8.6 70 1-70 1-75 (77)
20 3nqj_A Histone H3-like centrom 98.3 2.2E-06 7.7E-11 71.4 8.2 71 1-71 1-78 (82)
21 3v9r_A MHF1, uncharacterized p 98.2 4.1E-06 1.4E-10 71.0 8.2 59 8-67 17-79 (90)
22 3vh5_A CENP-S; histone fold, c 98.0 3.9E-06 1.3E-10 76.2 5.4 59 8-67 24-86 (140)
23 1jfi_B DR1 protein, transcript 98.0 1.8E-05 6.1E-10 74.9 9.2 69 3-71 15-84 (179)
24 2byk_B Chrac-14; nucleosome sl 98.0 1.7E-05 5.8E-10 71.3 8.0 68 3-70 9-78 (128)
25 1n1j_B NF-YC; histone-like PAI 97.9 2.9E-05 1E-09 66.4 7.7 67 2-68 18-85 (97)
26 3nqu_A Histone H3-like centrom 97.8 4E-05 1.4E-09 69.8 7.1 69 4-72 62-137 (140)
27 2yfv_A Histone H3-like centrom 97.8 5.5E-05 1.9E-09 65.3 7.5 65 3-67 27-99 (100)
28 2nqb_C Histone H2A; nucleosome 97.7 8E-05 2.7E-09 66.5 7.9 65 3-67 23-88 (123)
29 1tzy_C Histone H3; histone-fol 97.7 0.0001 3.4E-09 66.9 8.5 68 3-70 62-134 (136)
30 2f8n_G Core histone macro-H2A. 97.7 7.9E-05 2.7E-09 66.3 7.7 65 3-67 22-87 (120)
31 1tzy_A Histone H2A-IV; histone 97.6 0.00012 4E-09 66.0 7.8 65 3-67 25-90 (129)
32 3r45_A Histone H3-like centrom 97.6 3.6E-05 1.2E-09 71.0 4.4 68 3-70 77-151 (156)
33 2f8n_K Histone H2A type 1; nuc 97.6 0.00011 3.7E-09 67.7 7.4 65 3-67 44-109 (149)
34 1id3_C Histone H2A.1; nucleoso 97.5 0.00012 4.1E-09 66.1 6.7 65 3-67 25-90 (131)
35 1ibr_B P95, importin beta-1 su 97.5 0.004 1.4E-07 63.2 18.7 129 247-385 314-442 (462)
36 1jfi_A Transcription regulator 97.5 0.0001 3.4E-09 63.3 5.7 65 3-67 11-76 (98)
37 1f66_C Histone H2A.Z; nucleoso 97.4 0.00028 9.7E-09 63.4 7.0 65 3-67 27-93 (128)
38 4g92_C HAPE; transcription fac 97.3 0.00045 1.5E-08 61.3 7.6 66 3-68 41-107 (119)
39 4fdd_A Transportin-1; heat rep 97.2 0.0055 1.9E-07 68.8 17.0 197 175-383 216-432 (852)
40 2jss_A Chimera of histone H2B. 97.2 0.00073 2.5E-08 64.5 8.0 65 3-67 105-171 (192)
41 2bpt_A Importin beta-1 subunit 97.1 0.0091 3.1E-07 65.9 16.8 180 190-385 346-534 (861)
42 1qgr_A Protein (importin beta 97.1 0.0046 1.6E-07 68.4 13.9 180 190-384 343-541 (876)
43 2qk2_A LP04448P; mini spindles 96.9 0.019 6.4E-07 54.6 14.7 132 230-385 78-210 (242)
44 2nqb_D Histone H2B; nucleosome 96.8 0.003 1E-07 56.2 7.4 61 8-68 38-99 (123)
45 2bpt_A Importin beta-1 subunit 96.7 0.054 1.9E-06 59.7 18.9 137 246-391 672-823 (861)
46 4fdd_A Transportin-1; heat rep 96.7 0.02 6.9E-07 64.2 15.3 173 195-385 344-517 (852)
47 1tzy_B Histone H2B; histone-fo 96.7 0.0039 1.3E-07 55.7 7.3 61 8-68 41-102 (126)
48 1qgr_A Protein (importin beta 96.6 0.037 1.3E-06 61.1 16.8 145 230-383 625-777 (876)
49 2qk1_A Protein STU2; STU2P, XM 96.4 0.071 2.4E-06 51.9 15.5 189 175-384 21-224 (249)
50 2qk2_A LP04448P; mini spindles 96.4 0.037 1.3E-06 52.5 12.9 109 173-297 97-210 (242)
51 2byk_A Chrac-16; nucleosome sl 96.0 0.0056 1.9E-07 55.8 4.7 66 3-68 19-86 (140)
52 2jss_A Chimera of histone H2B. 95.6 0.03 1E-06 53.4 8.3 60 8-67 8-68 (192)
53 1h3o_B Transcription initiatio 95.5 0.072 2.5E-06 43.6 9.1 65 3-67 5-70 (76)
54 1u6g_C TIP120 protein, CAND1; 95.4 0.5 1.7E-05 55.2 19.1 121 228-358 492-620 (1230)
55 1bh9_B TAFII28; histone fold, 95.2 0.082 2.8E-06 44.5 8.7 68 2-69 15-83 (89)
56 1u6g_C TIP120 protein, CAND1; 95.1 0.37 1.3E-05 56.2 17.0 127 245-385 558-684 (1230)
57 1b3u_A Protein (protein phosph 94.4 0.72 2.5E-05 48.1 15.4 58 274-335 175-232 (588)
58 1b3u_A Protein (protein phosph 94.3 0.63 2.2E-05 48.5 14.8 117 251-386 438-554 (588)
59 2l5a_A Histone H3-like centrom 93.9 0.11 3.7E-06 51.0 7.1 64 7-70 19-86 (235)
60 2qk1_A Protein STU2; STU2P, XM 93.6 0.95 3.3E-05 43.8 13.5 159 175-348 61-233 (249)
61 1ibr_B P95, importin beta-1 su 93.5 2 6.8E-05 43.2 16.1 186 175-386 173-394 (462)
62 4dra_E Centromere protein X; D 91.2 0.99 3.4E-05 37.6 8.5 63 3-66 12-78 (84)
63 2x1g_F Cadmus; transport prote 90.5 2.4 8.2E-05 48.1 13.9 190 195-404 444-638 (971)
64 1h3o_A Transcription initiatio 90.2 0.19 6.6E-06 41.0 3.3 44 8-51 11-54 (75)
65 2x19_B Importin-13; nuclear tr 89.9 1.4 4.6E-05 49.9 11.2 181 206-405 440-623 (963)
66 3b0b_C CENP-X, centromere prot 88.9 1.5 5E-05 36.3 7.7 63 3-66 8-74 (81)
67 2of3_A ZYG-9; multifunctional 88.7 7.2 0.00025 38.7 14.1 139 225-392 99-248 (266)
68 4ffb_C Protein STU2; tubulin f 88.1 6.7 0.00023 37.7 13.3 145 226-386 68-218 (278)
69 1wa5_C Importin alpha RE-expor 87.8 7.9 0.00027 44.1 15.6 174 195-385 384-584 (960)
70 4hat_C Exportin-1; heat repeat 87.6 1.2 4.1E-05 52.0 8.8 199 193-405 434-643 (1023)
71 4db8_A Armadillo-repeat protei 87.1 2.6 8.9E-05 39.0 9.3 142 176-335 14-167 (252)
72 4db6_A Armadillo repeat protei 86.6 1.7 5.8E-05 39.2 7.6 141 175-333 13-165 (210)
73 1wa5_B Importin alpha subunit; 86.1 4.4 0.00015 42.4 11.5 111 207-334 215-327 (530)
74 4hxt_A De novo protein OR329; 86.0 2.8 9.6E-05 38.3 8.8 111 208-335 45-157 (252)
75 2vgl_B AP-2 complex subunit be 84.8 13 0.00044 40.0 14.6 76 248-336 115-190 (591)
76 1wa5_B Importin alpha subunit; 84.0 15 0.0005 38.4 14.3 112 206-334 172-285 (530)
77 1wa5_C Importin alpha RE-expor 83.9 3.5 0.00012 47.0 10.2 106 228-333 307-432 (960)
78 4db8_A Armadillo-repeat protei 83.6 2.6 9E-05 39.0 7.5 110 208-334 97-208 (252)
79 2jdq_A Importin alpha-1 subuni 83.3 11 0.00036 37.8 12.4 140 178-334 153-304 (450)
80 2jdq_A Importin alpha-1 subuni 83.0 15 0.00052 36.6 13.5 112 207-335 149-263 (450)
81 2iw3_A Elongation factor 3A; a 82.3 47 0.0016 38.8 18.6 147 195-358 37-185 (986)
82 4ffb_C Protein STU2; tubulin f 81.6 7 0.00024 37.6 10.0 127 177-314 105-242 (278)
83 1xqr_A HSPBP1 protein; armadil 81.3 36 0.0012 33.7 15.3 158 207-387 124-287 (296)
84 3ltj_A Alpharep-4; protein eng 80.9 30 0.001 30.7 14.2 49 275-335 88-136 (201)
85 2vgl_B AP-2 complex subunit be 79.5 5.5 0.00019 42.9 9.2 159 189-387 332-493 (591)
86 4hxt_A De novo protein OR329; 79.1 10 0.00035 34.4 9.8 110 208-334 87-198 (252)
87 2x1g_F Cadmus; transport prote 77.9 10 0.00035 42.9 11.2 85 230-331 527-614 (971)
88 1oyz_A Hypothetical protein YI 77.9 20 0.0007 33.7 11.8 14 276-289 141-154 (280)
89 3uk6_A RUVB-like 2; hexameric 77.9 7.3 0.00025 38.6 9.0 58 9-67 268-329 (368)
90 3m1i_C Exportin-1; heat repeat 77.5 32 0.0011 39.5 15.3 57 275-334 425-481 (1049)
91 4b8j_A Importin subunit alpha- 76.6 23 0.00078 36.8 12.7 153 206-381 243-401 (528)
92 3ltm_A Alpha-REP4; protein eng 75.7 44 0.0015 29.8 13.8 50 274-335 123-172 (211)
93 2x19_B Importin-13; nuclear tr 75.6 24 0.00081 39.7 13.3 84 232-331 512-598 (963)
94 3ltm_A Alpha-REP4; protein eng 75.3 45 0.0015 29.8 13.1 121 177-336 22-142 (211)
95 3bos_A Putative DNA replicatio 75.1 4.6 0.00016 36.8 6.1 57 8-66 182-241 (242)
96 1jr3_D DNA polymerase III, del 74.7 2.7 9.1E-05 41.9 4.7 60 7-67 149-208 (343)
97 2chg_A Replication factor C sm 73.2 6.1 0.00021 35.1 6.3 56 8-66 169-224 (226)
98 4b8j_A Importin subunit alpha- 72.8 33 0.0011 35.6 12.7 112 207-334 160-272 (528)
99 1w63_A Adapter-related protein 72.2 38 0.0013 36.6 13.5 139 175-337 351-492 (618)
100 3m1i_C Exportin-1; heat repeat 71.6 32 0.0011 39.5 13.3 195 194-404 435-642 (1049)
101 2vgl_A Adaptor protein complex 71.2 54 0.0019 35.7 14.5 78 249-337 141-218 (621)
102 3ltj_A Alpharep-4; protein eng 69.3 60 0.0021 28.6 12.8 52 274-337 118-169 (201)
103 1vsy_5 Proteasome activator BL 68.0 3.4 0.00012 48.2 4.2 121 226-357 815-947 (997)
104 1oyz_A Hypothetical protein YI 68.0 79 0.0027 29.5 18.0 132 178-336 27-158 (280)
105 3kw6_A 26S protease regulatory 64.3 6.6 0.00022 30.9 4.0 42 26-67 27-72 (78)
106 1njg_A DNA polymerase III subu 63.7 10 0.00036 33.9 5.8 56 9-66 194-249 (250)
107 3ksy_A SOS-1, SON of sevenless 63.2 16 0.00056 42.6 8.7 64 4-67 105-168 (1049)
108 1in4_A RUVB, holliday junction 63.1 16 0.00054 36.4 7.5 63 8-71 188-253 (334)
109 3gs3_A Symplekin, LD45768P; he 62.2 1.2E+02 0.0041 29.6 14.1 132 228-379 31-172 (257)
110 4db6_A Armadillo repeat protei 61.4 18 0.00061 32.3 6.9 111 207-334 96-208 (210)
111 2dzn_B 26S protease regulatory 60.1 8.5 0.00029 30.7 4.0 34 35-68 35-68 (82)
112 3vlf_B 26S protease regulatory 52.9 15 0.0005 29.8 4.4 44 26-69 25-72 (88)
113 2krk_A 26S protease regulatory 52.6 13 0.00045 30.2 4.0 41 27-67 36-80 (86)
114 3a6p_A Exportin-5; exportin-5, 51.2 3.6E+02 0.012 31.7 18.2 89 201-295 345-455 (1204)
115 3u0r_A Apoptosis inhibitor 5; 50.8 1.2E+02 0.0042 32.7 12.1 259 160-426 162-472 (507)
116 2z6h_A Catenin beta-1, beta-ca 49.1 77 0.0026 34.0 10.6 116 187-316 26-152 (644)
117 3aji_B S6C, proteasome (prosom 48.7 10 0.00035 30.1 2.7 42 27-68 26-71 (83)
118 2c9o_A RUVB-like 1; hexameric 47.2 49 0.0017 34.4 8.4 59 9-68 375-437 (456)
119 4hat_C Exportin-1; heat repeat 45.8 1.8E+02 0.006 33.9 13.5 90 233-336 524-623 (1023)
120 2v1u_A Cell division control p 45.2 60 0.0021 31.6 8.3 50 19-68 221-276 (387)
121 2z6g_A B-catenin; FULL-length, 44.7 70 0.0024 35.6 9.6 117 186-316 161-288 (780)
122 1sxj_D Activator 1 41 kDa subu 44.6 14 0.00048 36.1 3.5 57 9-66 201-261 (353)
123 1jdh_A Beta-catenin; beta-cate 43.2 1.2E+02 0.004 30.8 10.4 96 207-316 59-155 (529)
124 3a6p_A Exportin-5; exportin-5, 42.4 1.3E+02 0.0043 35.6 11.7 160 230-405 510-682 (1204)
125 3o2t_A Symplekin; heat repeat, 42.2 3.1E+02 0.011 28.4 13.6 132 228-379 41-182 (386)
126 1w63_A Adapter-related protein 41.7 3.6E+02 0.012 28.9 15.8 134 205-353 217-359 (618)
127 1g8p_A Magnesium-chelatase 38 41.5 81 0.0028 30.5 8.5 50 17-67 265-321 (350)
128 2z6g_A B-catenin; FULL-length, 41.5 38 0.0013 37.8 6.8 94 226-334 373-471 (780)
129 2qz4_A Paraplegin; AAA+, SPG7, 39.7 15 0.00051 34.3 2.7 59 8-67 185-248 (262)
130 3h4m_A Proteasome-activating n 39.3 23 0.00079 33.6 4.1 43 26-68 212-258 (285)
131 2db0_A 253AA long hypothetical 38.8 2.8E+02 0.0094 26.8 11.3 81 278-372 122-202 (253)
132 1jr3_A DNA polymerase III subu 38.8 41 0.0014 32.9 5.9 57 8-66 186-242 (373)
133 3k1j_A LON protease, ATP-depen 37.8 57 0.002 35.3 7.3 59 9-67 299-374 (604)
134 1jdh_A Beta-catenin; beta-cate 37.3 72 0.0025 32.4 7.7 98 226-334 240-338 (529)
135 2qby_A CDC6 homolog 1, cell di 36.9 1.4E+02 0.0049 28.8 9.5 50 19-68 217-272 (386)
136 3opb_A SWI5-dependent HO expre 36.6 2.4E+02 0.0081 32.1 12.2 141 227-380 471-635 (778)
137 3ibv_A Exportin-T; karyopherin 35.6 2.3E+02 0.0077 32.7 12.2 97 206-314 485-588 (980)
138 1sxj_B Activator 1 37 kDa subu 34.5 74 0.0025 30.2 6.8 56 8-66 174-229 (323)
139 1te4_A Conserved protein MTH18 34.1 23 0.00079 29.7 2.8 51 274-336 53-103 (131)
140 3v9r_B MHF2, uncharacterized p 33.8 56 0.0019 27.3 4.9 61 4-65 2-73 (88)
141 2chq_A Replication factor C sm 33.5 44 0.0015 31.8 5.0 55 8-65 169-223 (319)
142 2z6h_A Catenin beta-1, beta-ca 31.7 4.1E+02 0.014 28.2 12.9 98 226-334 237-335 (644)
143 2qby_B CDC6 homolog 3, cell di 30.3 1E+02 0.0035 30.1 7.3 63 4-68 197-270 (384)
144 3ibv_A Exportin-T; karyopherin 29.0 2E+02 0.0068 33.2 10.3 182 167-358 371-588 (980)
145 2r44_A Uncharacterized protein 28.5 1.9E+02 0.0065 27.9 8.8 48 20-67 226-296 (331)
146 3tjz_B Coatomer subunit gamma; 28.5 99 0.0034 31.6 6.9 144 169-335 133-279 (355)
147 3ip4_C Aspartyl/glutamyl-tRNA( 28.4 1E+02 0.0035 25.7 5.9 37 1-38 1-37 (100)
148 3pfi_A Holliday junction ATP-d 27.8 1E+02 0.0035 29.9 6.7 62 8-70 192-256 (338)
149 2ly8_A Budding yeast chaperone 27.2 92 0.0032 27.4 5.4 47 8-54 10-60 (121)
150 3d8b_A Fidgetin-like protein 1 26.9 95 0.0033 31.0 6.4 59 8-67 259-333 (357)
151 3ul1_B Importin subunit alpha- 26.5 5.5E+02 0.019 26.5 15.0 123 176-317 59-198 (510)
152 1fnn_A CDC6P, cell division co 25.9 2.3E+02 0.0078 27.5 8.9 49 20-68 214-274 (389)
153 1l8q_A Chromosomal replication 25.3 42 0.0014 32.7 3.3 57 9-67 175-239 (324)
154 3kfu_G Glutamyl-tRNA(Gln) amid 25.1 1.3E+02 0.0046 24.7 5.9 36 1-38 4-39 (92)
155 3ff5_A PEX14P, peroxisomal bio 24.8 52 0.0018 25.0 2.9 29 38-66 10-52 (54)
156 2z4s_A Chromosomal replication 24.4 62 0.0021 33.6 4.6 58 9-68 272-332 (440)
157 3a1y_A 50S ribosomal protein P 24.4 93 0.0032 23.7 4.4 40 4-44 17-57 (58)
158 1lv7_A FTSH; alpha/beta domain 24.3 76 0.0026 29.6 4.8 43 26-68 206-252 (257)
159 1hqc_A RUVB; extended AAA-ATPa 23.9 82 0.0028 30.2 5.1 61 8-69 176-239 (324)
160 3b9p_A CG5977-PA, isoform A; A 23.7 1.1E+02 0.0037 29.1 5.9 58 9-67 198-271 (297)
161 1ixz_A ATP-dependent metallopr 23.4 64 0.0022 30.1 4.1 47 20-66 203-254 (254)
162 4b4t_J 26S protease regulatory 23.0 65 0.0022 33.7 4.3 42 26-67 343-388 (405)
163 3mn2_A Probable ARAC family tr 22.6 2.5E+02 0.0085 22.5 7.1 61 8-80 20-85 (108)
164 2iw3_A Elongation factor 3A; a 22.3 6.1E+02 0.021 29.6 12.6 168 174-354 54-223 (986)
165 4b4t_I 26S protease regulatory 22.2 69 0.0024 34.0 4.4 42 26-67 377-422 (437)
166 3bl2_A V-BCL-2; protein-protei 22.0 1.2E+02 0.004 26.3 4.9 43 299-346 61-103 (131)
167 1iy2_A ATP-dependent metallopr 21.7 72 0.0025 30.3 4.1 47 20-66 227-278 (278)
168 1iqp_A RFCS; clamp loader, ext 21.0 84 0.0029 29.9 4.4 54 9-65 178-231 (327)
169 2w84_A Peroxisomal membrane pr 20.9 50 0.0017 26.5 2.2 32 39-70 16-61 (70)
170 4fqn_A Malcavernin; helical do 20.6 45 0.0015 28.3 2.0 62 464-525 13-82 (98)
171 4b4t_L 26S protease subunit RP 20.0 81 0.0028 33.2 4.4 42 26-67 376-421 (437)
172 4b4t_H 26S protease regulatory 20.0 82 0.0028 33.7 4.4 41 27-67 405-449 (467)
No 1
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=100.00 E-value=5.8e-59 Score=447.50 Aligned_cols=183 Identities=37% Similarity=0.632 Sum_probs=177.7
Q ss_pred cccCcHHHHHHHHHHHHHhhcCCChHHHHHHHHHhhhcCCccccchhhHHHHHHHHhhhcCCHHHHHHHHHHHHHhhcCC
Q 009716 165 KHVLSKELQLYFDKIRELTVSRSNSTVFKQALLSLAMDSGLHPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNP 244 (528)
Q Consensus 165 kh~LSkElQ~Yf~kIt~a~l~~~~~~~r~~AL~sL~tD~gL~qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~Np 244 (528)
||+||+|+|+||++||++|++ ..|++||++|++|||||||+|||++||+++|++|++|+..|.++|+|++||++||
T Consensus 2 kh~LS~Elq~yf~~It~a~~~----~~r~~aL~sL~~D~gL~~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~ 77 (196)
T 4atg_A 2 SHMLPKELQLYFDKILSMIKS----DMKDIAIECLEKESGLQQLVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNK 77 (196)
T ss_dssp GGGSCHHHHHHHHHHHHHHTS----TTHHHHHHHHHHCSSCTTTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCT
T ss_pred CcccCHHHHHHHHHHHHHHHh----HHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCC
Confidence 799999999999999999997 4689999999999999999999999999999999999999999999999999999
Q ss_pred CcccccchhhhHHHHHHHHhccccCCCCCCCchHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhh
Q 009716 245 HIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHY 324 (528)
Q Consensus 245 ~L~LepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~~y~~L~~RI~~tL~k~llDp~k~l~t~Y 324 (528)
+++||||+|||||++|||+|++++|+. +|||+||++|+.||++||++|++|++||+++|+|+|+||++|+++||
T Consensus 78 ~l~lepYlH~LipsvLtCll~k~l~~~------~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~Y 151 (196)
T 4atg_A 78 HVFIDPYLHQILPSLLTCVIGKSIVDD------DVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQY 151 (196)
T ss_dssp TCCCGGGHHHHHHHHHHHHHCTTCCCH------HHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCTTSCHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHhcccCHH------HHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCCCCChHHHH
Confidence 999999999999999999999999875 99999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhChhhhhhhcccchHHHHHhhhhhh
Q 009716 325 GAIQGLAALGPSVVHLLILPNLELYLKFLEPEM 357 (528)
Q Consensus 325 GAI~GL~aLG~~aVr~lilP~L~~y~~~Le~~l 357 (528)
|||+||++||++|||.+|+|+++.|++.++..-
T Consensus 152 GAi~GL~~lG~~~vr~~llP~l~~~~~~~~~~~ 184 (196)
T 4atg_A 152 GALYCLSILSKNVVNTVIREHAEEYKRTIGKKK 184 (196)
T ss_dssp HHHHHHHHHCHHHHHTHHHHHHHHHHHHTCCHH
T ss_pred HHHHHHHHhHHHHHHHhhhcCHHHHHHHHHHHH
Confidence 999999999999999999999999999887653
No 2
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=99.91 E-value=2.5e-24 Score=174.87 Aligned_cols=67 Identities=43% Similarity=0.610 Sum_probs=65.3
Q ss_pred CCCCChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhc
Q 009716 1 MSIVPKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (528)
Q Consensus 1 Ms~~~~e~V~~iAes~Gi~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~ 67 (528)
|++||.++|++||||+|+++||||+++.||+|||||++||+|+|+|||+|+||++||++|||.||+.
T Consensus 4 ~s~lp~~~v~~iaes~Gi~~lsddaa~~LA~dvEyr~~eI~qeA~kfmrHakRk~Lt~~DI~~Alk~ 70 (70)
T 1taf_B 4 GSSISAESMKVIAESIGVGSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLKV 70 (70)
T ss_dssp SCCCCHHHHHHHHHHTTCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC-
T ss_pred cccCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHcC
Confidence 8999999999999999999999999999999999999999999999999999999999999999974
No 3
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=99.72 E-value=5.5e-18 Score=142.41 Aligned_cols=75 Identities=25% Similarity=0.349 Sum_probs=71.9
Q ss_pred CCChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhccCCCCccCCCC
Q 009716 3 IVPKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNVEPIYGFAS 78 (528)
Q Consensus 3 ~~~~e~V~~iAes~Gi~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~~nvePlyGy~s 78 (528)
.+|+++|+++|++.|+.++|+++...|++++++++++|+++|.+||+|+||+++|++||..||+.++ +|+|||.+
T Consensus 10 ~ip~~~I~Riar~~Gv~rIs~da~~~l~~~l~~~~~~I~~dA~~~a~ha~RKTvt~~DV~~Alk~~g-~~lYgf~~ 84 (84)
T 2hue_C 10 GITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQG-RTLYGFGG 84 (84)
T ss_dssp SSCHHHHHHHHHHTTCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTTC-EEEESCC-
T ss_pred CCCHHHHHHHHHHcCchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcC-CCCCCCCC
Confidence 5899999999999999999999999999999999999999999999999999999999999999886 79999974
No 4
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=99.69 E-value=2.6e-17 Score=143.04 Aligned_cols=75 Identities=23% Similarity=0.350 Sum_probs=72.2
Q ss_pred CCChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhccCCCCccCCCC
Q 009716 3 IVPKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNVEPIYGFAS 78 (528)
Q Consensus 3 ~~~~e~V~~iAes~Gi~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~~nvePlyGy~s 78 (528)
.||+++|+++|++.|+.++|+++.+.|++++|+++++|+++|++||+|++|+|+|++||..||+.++ +|+|||.+
T Consensus 28 ~ip~~~I~Rlar~~Gv~rIS~da~~~l~~~le~fi~~I~~dA~~~a~HakRKTVt~~DV~~ALkr~g-~~lYGf~~ 102 (102)
T 1id3_B 28 GITKPAIRRLARRGGVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQG-RTLYGFGG 102 (102)
T ss_dssp GSCHHHHHHHHHHTTCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTT-CCEESSCC
T ss_pred CCCHHHHHHHHHHcCchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcC-CCCCCCCC
Confidence 4899999999999999999999999999999999999999999999999999999999999999886 79999974
No 5
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=99.64 E-value=2e-16 Score=137.69 Aligned_cols=75 Identities=24% Similarity=0.350 Sum_probs=65.3
Q ss_pred CCChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhccCCCCccCCCC
Q 009716 3 IVPKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNVEPIYGFAS 78 (528)
Q Consensus 3 ~~~~e~V~~iAes~Gi~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~~nvePlyGy~s 78 (528)
.||.++|+++|++.|+.++++++...|++.+||++.+|+++|.+||+|++|+++|++||..||+.++ +|+|||.+
T Consensus 29 gip~~~I~Rlar~~G~~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktvt~~DV~~Alr~~g-~~lYGf~~ 103 (103)
T 2yfw_B 29 GITKPAIRRLARRGGVKRISGLIYEEVRNVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQG-RTLYGFGG 103 (103)
T ss_dssp -CCHHHHHHHHHHTTCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHC---------
T ss_pred cCCHHHHHHHHHHcCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcC-CCCcCCCC
Confidence 3899999999999999999999999999999999999999999999999999999999999999998 89999963
No 6
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=99.64 E-value=2.5e-16 Score=137.01 Aligned_cols=74 Identities=26% Similarity=0.374 Sum_probs=71.8
Q ss_pred CChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhccCCCCccCCCC
Q 009716 4 VPKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNVEPIYGFAS 78 (528)
Q Consensus 4 ~~~e~V~~iAes~Gi~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~~nvePlyGy~s 78 (528)
||.++|+++|++.|+.++++++...|++.+||++.+|+++|.+||+|++|+++|++||..||+.++ +|+|||.+
T Consensus 30 ip~~~I~Rlar~~G~~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktIt~~DV~~Alr~~g-~~lYGf~~ 103 (103)
T 1tzy_D 30 ITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQG-RTLYGFGG 103 (103)
T ss_dssp SCHHHHHHHHHHTTCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTT-CEEESCCC
T ss_pred CCHHHHHHHHHHcCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHcC-CCCcCCCC
Confidence 899999999999999999999999999999999999999999999999999999999999999886 79999963
No 7
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=99.22 E-value=2.7e-11 Score=98.06 Aligned_cols=67 Identities=25% Similarity=0.359 Sum_probs=64.3
Q ss_pred CCCCChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhc
Q 009716 1 MSIVPKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (528)
Q Consensus 1 Ms~~~~e~V~~iAes~Gi~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~ 67 (528)
|+.+|+.+|++++++.|..++++++...|++.+++++.+|+++|..|++|+||+|++++||..|++.
T Consensus 4 ~~~lp~a~v~Rl~r~~g~~ris~~a~~~l~e~~~~~~~~v~~dA~~~a~hakRkTI~~~DV~lA~~~ 70 (70)
T 1ku5_A 4 MGELPIAPVDRLIRKAGAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIKS 70 (70)
T ss_dssp -CCSCHHHHHHHHHHTTCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHTC
T ss_pred cccCChHHHHHHHHHcCcceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHC
Confidence 5789999999999999999999999999999999999999999999999999999999999999873
No 8
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=99.01 E-value=3.5e-10 Score=100.75 Aligned_cols=61 Identities=21% Similarity=0.342 Sum_probs=59.7
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhccCCCCccCCC
Q 009716 16 IGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNVEPIYGFA 77 (528)
Q Consensus 16 ~Gi~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~~nvePlyGy~ 77 (528)
.|+.++|+++.+.+.+.++.++.+|+++|+++++|++|||+|++||..||+..|. |+|||+
T Consensus 60 gGvkRIS~~iy~e~r~vl~~~l~~i~rdav~yaehA~RKTVta~DV~~Alkr~G~-~lygf~ 120 (121)
T 2ly8_A 60 RGSKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGR-TLYGFG 120 (121)
T ss_dssp CCSSCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCHHHHHHHHHHTTC-GGGGCC
T ss_pred cCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhCCC-cCCCCC
Confidence 5999999999999999999999999999999999999999999999999999999 999997
No 9
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=98.94 E-value=2.1e-09 Score=99.55 Aligned_cols=72 Identities=19% Similarity=0.163 Sum_probs=68.0
Q ss_pred CCCCChHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhccCCCC
Q 009716 1 MSIVPKETIEVIAQSI-GVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNVEP 72 (528)
Q Consensus 1 Ms~~~~e~V~~iAes~-Gi~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~~nveP 72 (528)
|.++|..+|.+|++.. |..++|.|+...|++.+++++..|..+|..+++|+||+|++++||..|+..+|.|.
T Consensus 2 ~~~LP~a~V~Riik~~lg~~rVS~dA~~~l~~~l~~f~~~i~~~A~~~a~ha~RKTv~a~DV~~a~~~lg~~~ 74 (154)
T 1f1e_A 2 AVELPKAAIERIFRQGIGERRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALADVLMVEG 74 (154)
T ss_dssp --CCCHHHHHHHHHTTSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHHHTCTT
T ss_pred cccCCccHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhccccc
Confidence 6789999999999999 99999999999999999999999999999999999999999999999999888873
No 10
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=98.90 E-value=2.7e-10 Score=111.31 Aligned_cols=68 Identities=22% Similarity=0.309 Sum_probs=65.4
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhccCCCCccCCC
Q 009716 9 IEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNVEPIYGFA 77 (528)
Q Consensus 9 V~~iAes~Gi~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~~nvePlyGy~ 77 (528)
+.++|+..|+.++|+++.+.+.+.++.++++|+++|++|++|++|+|+|++||..||+..+ .|+|||.
T Consensus 167 ~~RlaRrgGVkRIS~~iyeelr~vLe~fle~IirdAv~yaeHA~RKTVta~DV~~ALKr~g-r~lYGf~ 234 (235)
T 2l5a_A 167 DEEDGDKGGVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQG-RTLYGFG 234 (235)
T ss_dssp CCTTSCCTTCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHH-HHHTTCC
T ss_pred HHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhcC-CccccCC
Confidence 4578899999999999999999999999999999999999999999999999999999998 8999997
No 11
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=98.85 E-value=9.6e-09 Score=82.36 Aligned_cols=67 Identities=31% Similarity=0.385 Sum_probs=64.4
Q ss_pred CCCChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhcc
Q 009716 2 SIVPKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLR 68 (528)
Q Consensus 2 s~~~~e~V~~iAes~Gi~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~~ 68 (528)
+.+|..+|++++++.|..+++.|+...|++.+|+++..|..+|..+++|+||+|++++||..|++.+
T Consensus 1 ~~lP~a~v~Ri~k~~~~~ris~~A~~~l~~a~e~fi~~l~~~A~~~a~~~kRkTI~~~Di~~A~~~l 67 (68)
T 1b67_A 1 GELPIAPIGRIIKNAGAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARKMF 67 (68)
T ss_dssp CCSCHHHHHHHHHHTTCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHGGGG
T ss_pred CCCCccHHHHHHhcCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Confidence 4689999999999999999999999999999999999999999999999999999999999999865
No 12
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=98.79 E-value=1.8e-08 Score=81.38 Aligned_cols=62 Identities=21% Similarity=0.218 Sum_probs=59.6
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhcc
Q 009716 7 ETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLR 68 (528)
Q Consensus 7 e~V~~iAes~Gi~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~~ 68 (528)
..|.+|.++.|+++.++++...|.+.++.+..+|+++|..|++|++|++++.+||..|++.+
T Consensus 5 ~~i~~iLk~~G~~~~~~~v~~~L~e~~~ry~~~il~dA~~~a~HAgrktv~~eDVkLAi~~~ 66 (68)
T 1taf_A 5 QVIMSILKELNVQEYEPRVVNQLLEFTFRYVTSILDDAKVYANHARKKTIDLDDVRLATEVT 66 (68)
T ss_dssp HHHHHHHHHTTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhc
Confidence 47899999999999999999999999999999999999999999999999999999999864
No 13
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=98.74 E-value=1.7e-08 Score=88.79 Aligned_cols=68 Identities=15% Similarity=0.131 Sum_probs=62.9
Q ss_pred CCChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhccCC
Q 009716 3 IVPKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNV 70 (528)
Q Consensus 3 ~~~~e~V~~iAes~Gi~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~~nv 70 (528)
.+|+.+|++||+..|..++|+++...|.+-++.++.+|+.+|..|++|+||++++++||..|++..+-
T Consensus 7 ~lP~a~I~Ri~r~~g~~rIS~~a~~~l~e~l~~f~~~v~~da~~~A~HA~RKTV~~eDV~lalrr~g~ 74 (111)
T 3b0c_T 7 EIASSLIKQIFSHYVKTPVTRDAYKIVEKCSERYFKQISSDLEAYSQHAGRKTVEMADVELLMRRQGL 74 (111)
T ss_dssp ---CHHHHHHHHHHHCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTS
T ss_pred CCCHHHHHHHHHHCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHCCC
Confidence 58999999999999999999999999999999999999999999999999999999999999998543
No 14
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=98.65 E-value=5.4e-08 Score=90.15 Aligned_cols=65 Identities=18% Similarity=0.233 Sum_probs=63.4
Q ss_pred CCChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhc
Q 009716 3 IVPKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (528)
Q Consensus 3 ~~~~e~V~~iAes~Gi~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~ 67 (528)
.+|..+|.++++..|..++|+++...|++.+|+.+.+|+.+|.++++|+||+|+|++||..|++.
T Consensus 82 ~lP~a~V~Ri~k~~g~~RVS~~A~~~l~~~le~f~~~I~~~A~~~a~ha~RKTIt~eDV~~Al~~ 146 (154)
T 1f1e_A 82 LFGRATVRRILKRAGIERASSDAVDLYNKLICRATEELGEKAAEYADEDGRKTVQGEDVEKAITY 146 (154)
T ss_dssp CCCHHHHHHHHHHTTCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred cCCccHHHHHHHHcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 58999999999999999999999999999999999999999999999999999999999999975
No 15
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=98.41 E-value=8.8e-07 Score=75.24 Aligned_cols=68 Identities=15% Similarity=0.130 Sum_probs=63.4
Q ss_pred CCChHHHHHHHHHcCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhccCC
Q 009716 3 IVPKETIEVIAQSIGV--YNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNV 70 (528)
Q Consensus 3 ~~~~e~V~~iAes~Gi--~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~~nv 70 (528)
.+|..+|++|+++.|- .+++.|+...|++.+|..|..+..+|..++.|.||+|++.+||..|++.++.
T Consensus 8 ~LP~a~i~ri~K~~~~~~~~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~~~kRkTI~~~Dv~~Al~~l~F 77 (93)
T 1n1j_A 8 YLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGF 77 (93)
T ss_dssp CCCHHHHHHHHHHTSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHTTC
T ss_pred cCChhHHHHHHHHhCCccceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcCc
Confidence 5899999999999975 6899999999999999999999999999999999999999999999985443
No 16
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=98.40 E-value=6.4e-07 Score=73.49 Aligned_cols=65 Identities=14% Similarity=0.174 Sum_probs=61.7
Q ss_pred CCChHHHHHHHH-HcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhc
Q 009716 3 IVPKETIEVIAQ-SIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (528)
Q Consensus 3 ~~~~e~V~~iAe-s~Gi~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~ 67 (528)
.+|.++|++|.+ ..+-.+++.|+...+.+.++..+..|..+|.+.++|.+|+|++.+||..|++.
T Consensus 4 ~LP~A~V~rI~K~~~p~~~is~~A~~~i~~~~~~Fi~~la~eA~~~a~~~~rKTI~~~dI~~A~~~ 69 (76)
T 3b0c_W 4 TVPRGTLRKIIKKHKPHLRLAANTDLLVHLSFLLFLHRLAEEARTNAFENKSKIIKPEHTIAAAKV 69 (76)
T ss_dssp CCCHHHHHHHHHHHCTTCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHH
T ss_pred cccccHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 589999999999 55877899999999999999999999999999999999999999999999985
No 17
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=98.36 E-value=3.4e-07 Score=80.50 Aligned_cols=60 Identities=17% Similarity=0.230 Sum_probs=56.0
Q ss_pred HHHHHHHHcCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhc
Q 009716 8 TIEVIAQSIGVYN---LSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (528)
Q Consensus 8 ~V~~iAes~Gi~~---Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~ 67 (528)
+|.+|+++.|..+ +|++++..|++-++..+.+|..++..|++|+||++++++||..|+|.
T Consensus 32 ~V~rIvke~gaer~~~vS~~ai~aL~El~~~~~~~ia~Dl~~fAkHAgRkTI~~eDV~La~Rr 94 (113)
T 4dra_A 32 TVGCLCEEVALDKEMQFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKLLARR 94 (113)
T ss_dssp HHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTT
T ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHh
Confidence 5778888887766 99999999999999999999999999999999999999999999875
No 18
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=98.35 E-value=5.1e-07 Score=78.90 Aligned_cols=60 Identities=18% Similarity=0.199 Sum_probs=56.2
Q ss_pred HHHHHHHHcCC---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhc
Q 009716 8 TIEVIAQSIGV---YNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (528)
Q Consensus 8 ~V~~iAes~Gi---~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~ 67 (528)
+|.+|++..|. .++++++...|++-++..+.+|..+|..|++|++|++++++||..|+|.
T Consensus 24 ~V~rI~~~~g~~~~~~vs~~~i~aL~E~~~~~~~~ia~Da~~fA~HAgRkTI~~eDV~La~Rr 86 (107)
T 3b0b_B 24 TTGCLCQDVAEDKGVLFSKQTVAAISEITFRQCENFARDLEMFARHAKRSTITSEDVKLLARR 86 (107)
T ss_dssp HHHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTT
T ss_pred HHHHHHHHHhhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcCCHHHHHHHHHh
Confidence 57888888887 6899999999999999999999999999999999999999999999875
No 19
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}
Probab=98.33 E-value=1.7e-06 Score=71.43 Aligned_cols=70 Identities=20% Similarity=0.340 Sum_probs=65.3
Q ss_pred CCCCChHHHHHHHHHc-----CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhccCC
Q 009716 1 MSIVPKETIEVIAQSI-----GVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNV 70 (528)
Q Consensus 1 Ms~~~~e~V~~iAes~-----Gi~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~~nv 70 (528)
|-.+|+.++.++...+ |-.+.+.+|..+|.+-.|.++-++.++|..++.|+||.|+++.||..|.+.++.
T Consensus 1 ~lli~k~PF~RLVRei~~~~~~~~R~q~~Al~aLQea~Eaylv~lfeda~l~A~HAkRvTi~~kDiqLa~rirg~ 75 (77)
T 2hue_B 1 MALIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 75 (77)
T ss_dssp -CCSCHHHHHHHHHHHHHTTCSSCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTC
T ss_pred CCccccchHHHHHHHHHHHcCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHhhHHHHHHHhCc
Confidence 6678999999998888 888999999999999999999999999999999999999999999999998764
No 20
>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}
Probab=98.28 E-value=2.2e-06 Score=71.42 Aligned_cols=71 Identities=27% Similarity=0.328 Sum_probs=63.7
Q ss_pred CCCCChHHHHHHHHHcC-------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhccCCC
Q 009716 1 MSIVPKETIEVIAQSIG-------VYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNVE 71 (528)
Q Consensus 1 Ms~~~~e~V~~iAes~G-------i~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~~nve 71 (528)
|-.+|+.++.++...++ -.+.+.+|..+|.+-.|.++-.+.++|..++.|+||.|+++.||..|.+.++..
T Consensus 1 ~lLI~klPF~RLVREI~~~~~~~~~~R~q~~Al~aLQea~E~ylv~Lfeda~lcAiHAkRvTi~~kDiqLa~rirg~~ 78 (82)
T 3nqj_A 1 MLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRGLE 78 (82)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHSSCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHC--
T ss_pred CCCcccccHHHHHHHHHHHhccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHHHHHHHHHcccc
Confidence 67789988888777776 458999999999999999999999999999999999999999999999998874
No 21
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=98.20 E-value=4.1e-06 Score=71.03 Aligned_cols=59 Identities=19% Similarity=0.179 Sum_probs=52.7
Q ss_pred HHHHHHHHc----CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhc
Q 009716 8 TIEVIAQSI----GVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (528)
Q Consensus 8 ~V~~iAes~----Gi~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~ 67 (528)
+|..|+++. |+ +++++++..|++-++..+.+|..++..|++|++|++++++||..|+|.
T Consensus 17 ~V~ki~~e~~~~~g~-~vs~~~i~aL~e~~~~~~~~ia~Dl~~fA~HAgRkTI~~eDV~L~~Rr 79 (90)
T 3v9r_A 17 RVEERLQQVLSSEDI-KYTPRFINSLLELAYLQLGEMGSDLQAFARHAGRGVVNKSDLMLYLRK 79 (90)
T ss_dssp HHHHHHHHHSCSSCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTT
T ss_pred HHHHHHHHHHHhcCc-eeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 355566665 55 599999999999999999999999999999999999999999999875
No 22
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=98.04 E-value=3.9e-06 Score=76.18 Aligned_cols=59 Identities=24% Similarity=0.285 Sum_probs=52.2
Q ss_pred HHHHHHHHc----CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhc
Q 009716 8 TIEVIAQSI----GVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (528)
Q Consensus 8 ~V~~iAes~----Gi~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~ 67 (528)
+|..|++.. |+ +++++++..|++-++..+.+|..++..|++|++|++++++||..|+|.
T Consensus 24 ~VgkIvee~~~~~~~-~vS~~ai~aL~El~~~~~e~ia~DLe~FAkHAGRKTI~~eDVkLa~Rr 86 (140)
T 3vh5_A 24 TTGALAQDVAEDKGV-LFSKQTVAAISEITFRQAENFARDLEMFARHAKRSTITSEDVKLLARR 86 (140)
T ss_dssp HHHHHHHHHHHHHTC-EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCC-CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 344555554 55 599999999999999999999999999999999999999999999975
No 23
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=98.00 E-value=1.8e-05 Score=74.92 Aligned_cols=69 Identities=13% Similarity=0.137 Sum_probs=64.6
Q ss_pred CCChHHHHHHHHHcCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhccCCC
Q 009716 3 IVPKETIEVIAQSIGV-YNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNVE 71 (528)
Q Consensus 3 ~~~~e~V~~iAes~Gi-~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~~nve 71 (528)
.+|.++|.+|+++.+- .+++.|+...|.+.++.+|..|..+|.+++.|.+|+|++.+||-.||+.++.+
T Consensus 15 ~LP~A~V~RImK~alp~~rISkDA~~al~ec~~eFI~~LtseA~e~a~~~~RKTI~~eDVl~Al~~LgF~ 84 (179)
T 1jfi_B 15 TIPRAAINKMIKETLPNVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALESLGFG 84 (179)
T ss_dssp CCCHHHHHHHHHHHSTTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHTTG
T ss_pred hcCHHHHHHHHHHhCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhcChH
Confidence 5899999999999973 68999999999999999999999999999999999999999999999976653
No 24
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=97.96 E-value=1.7e-05 Score=71.33 Aligned_cols=68 Identities=13% Similarity=0.123 Sum_probs=62.7
Q ss_pred CCChHHHHHHHHHcC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhccCC
Q 009716 3 IVPKETIEVIAQSIG--VYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNV 70 (528)
Q Consensus 3 ~~~~e~V~~iAes~G--i~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~~nv 70 (528)
.||.+.|++|.+..+ ..+++.|+...|++.+|.+|..|..+|..+++|.+|++|+.+||..|++.++.
T Consensus 9 ~LP~A~I~rImK~~~pd~~~iS~dA~~~l~ka~e~FI~~lt~~A~~~a~~~kRKTI~~~Dv~~Al~~l~f 78 (128)
T 2byk_B 9 NLPNAVIGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQTLTELDF 78 (128)
T ss_dssp --CCSHHHHHHHHHSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHhCcccceECHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcCc
Confidence 389999999999765 67899999999999999999999999999999999999999999999998765
No 25
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=97.88 E-value=2.9e-05 Score=66.45 Aligned_cols=67 Identities=18% Similarity=0.169 Sum_probs=61.4
Q ss_pred CCCChHHHHHHHHHcCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhcc
Q 009716 2 SIVPKETIEVIAQSIGV-YNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLR 68 (528)
Q Consensus 2 s~~~~e~V~~iAes~Gi-~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~~ 68 (528)
..+|...|++|.++-+- .+++.|+...++.-+|+.+.+++.+|.+.+++.||++++.+||..|++..
T Consensus 18 ~~lP~arIkrImK~~~~~~~is~eA~~~laka~E~Fi~~l~~~A~~~a~~~krktI~~~di~~Av~~~ 85 (97)
T 1n1j_B 18 QELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKF 85 (97)
T ss_dssp --CCHHHHHHHHTTSTTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTC
T ss_pred CcCCHHHHHHHHccCccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHhcC
Confidence 35899999999999876 67999999999999999999999999999999999999999999998653
No 26
>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A
Probab=97.78 E-value=4e-05 Score=69.76 Aligned_cols=69 Identities=26% Similarity=0.311 Sum_probs=58.5
Q ss_pred CChHHHHHHHHHcC-------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhccCCCC
Q 009716 4 VPKETIEVIAQSIG-------VYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNVEP 72 (528)
Q Consensus 4 ~~~e~V~~iAes~G-------i~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~~nveP 72 (528)
||+.++.++...++ -.+.+.+|..+|.+..|.++-.+.++|..++.|+||.||++.||..|.+.++...
T Consensus 62 IpKlPF~RLVREI~~~~~~~~~~Rfq~~Al~ALQEAaEayLv~LFEdanlcAiHAkRVTIm~kDiqLArrirg~~~ 137 (140)
T 3nqu_A 62 IRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRGLEE 137 (140)
T ss_dssp SCTTHHHHHHHHHHHHHHTTCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHC---
T ss_pred cccccHHHHHHHHHHHhcccccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHHhccccc
Confidence 56666666655554 4579999999999999999999999999999999999999999999999998753
No 27
>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A
Probab=97.77 E-value=5.5e-05 Score=65.30 Aligned_cols=65 Identities=14% Similarity=0.196 Sum_probs=57.5
Q ss_pred CCChHHHHHHHHHcC--------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhc
Q 009716 3 IVPKETIEVIAQSIG--------VYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (528)
Q Consensus 3 ~~~~e~V~~iAes~G--------i~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~ 67 (528)
.+|+.++.++...+| ..+.+.+|..+|.+-.|..+-++.++|..++.|+||.|+++.||..|.+.
T Consensus 27 lIpk~PF~RLVREI~~~~~~~~~~~R~q~~Al~ALQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~ri 99 (100)
T 2yfv_A 27 LISRMPFARLVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMRKDMQLARRI 99 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTC-----CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHC
T ss_pred hhccccHHHHHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHHh
Confidence 378888877777776 45789999999999999999999999999999999999999999999875
No 28
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=97.71 E-value=8e-05 Score=66.54 Aligned_cols=65 Identities=17% Similarity=0.193 Sum_probs=61.9
Q ss_pred CCChHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhc
Q 009716 3 IVPKETIEVIAQSI-GVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (528)
Q Consensus 3 ~~~~e~V~~iAes~-Gi~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~ 67 (528)
.||..-|.++.+.. +..+++++++..||.-+||...||++.|.+.++|.+|++++++||+.|++.
T Consensus 23 ~fPV~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~n 88 (123)
T 2nqb_C 23 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRN 88 (123)
T ss_dssp SSCHHHHHHHHHHTTSCSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred eccHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHhc
Confidence 58999999999986 899999999999999999999999999999999999999999999999974
No 29
>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...
Probab=97.71 E-value=0.0001 Score=66.95 Aligned_cols=68 Identities=19% Similarity=0.320 Sum_probs=62.4
Q ss_pred CCChHHHHHHHHHc-----CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhccCC
Q 009716 3 IVPKETIEVIAQSI-----GVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNV 70 (528)
Q Consensus 3 ~~~~e~V~~iAes~-----Gi~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~~nv 70 (528)
.||+.++.++...+ |-.+.+.+|..+|.+-.|.++-++.++|..++.|+||.+|++.||..|.+.++.
T Consensus 62 LIpk~PF~RLVREI~~~~~~~~R~q~~Al~aLQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~rirg~ 134 (136)
T 1tzy_C 62 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 134 (136)
T ss_dssp CSCHHHHHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHTC
T ss_pred hhccchHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHhHHHHHHHhCc
Confidence 47888888877777 777999999999999999999999999999999999999999999999998764
No 30
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=97.70 E-value=7.9e-05 Score=66.33 Aligned_cols=65 Identities=18% Similarity=0.239 Sum_probs=62.0
Q ss_pred CCChHHHHHHHHHcC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhc
Q 009716 3 IVPKETIEVIAQSIG-VYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (528)
Q Consensus 3 ~~~~e~V~~iAes~G-i~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~ 67 (528)
.||-.-|.++.+..+ ..+++++++..||.-+||...||++.|.+.++|.+|+++|++||+.|++.
T Consensus 22 qfPV~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~~rItp~hi~lAI~n 87 (120)
T 2f8n_G 22 IFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTPRHILLAVAN 87 (120)
T ss_dssp SSCHHHHHHHHHHHSSSCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred cCChHHHHHHHHcCccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHhc
Confidence 589999999999998 78899999999999999999999999999999999999999999999974
No 31
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=97.63 E-value=0.00012 Score=65.97 Aligned_cols=65 Identities=17% Similarity=0.193 Sum_probs=61.8
Q ss_pred CCChHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhc
Q 009716 3 IVPKETIEVIAQSI-GVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (528)
Q Consensus 3 ~~~~e~V~~iAes~-Gi~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~ 67 (528)
.||..-|.++.+.- +..+++++++..|+.-+||...||++.|.+.++|.+|++++++||+.|++.
T Consensus 25 qfPV~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~n 90 (129)
T 1tzy_A 25 QFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRN 90 (129)
T ss_dssp SSCHHHHHHHHHHTTSSSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred eccHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHhc
Confidence 58999999999985 899999999999999999999999999999999999999999999999973
No 32
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=97.62 E-value=3.6e-05 Score=71.03 Aligned_cols=68 Identities=25% Similarity=0.314 Sum_probs=59.9
Q ss_pred CCChHHHHHHHHHcC-------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhccCC
Q 009716 3 IVPKETIEVIAQSIG-------VYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNV 70 (528)
Q Consensus 3 ~~~~e~V~~iAes~G-------i~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~~nv 70 (528)
.||+.++.++...++ -.+.+.+|..+|.+..|.++-.+.++|..++.|+||.||++.||..|.+.++.
T Consensus 77 LIpKlPF~RLVREIa~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEdanLcAiHAkRVTIm~kDIqLArrIrg~ 151 (156)
T 3r45_A 77 LIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRGL 151 (156)
T ss_dssp CSCHHHHHHHHHHHHHTTTTTCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHhccCccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHHHccc
Confidence 367777777766665 34788999999999999999999999999999999999999999999998765
No 33
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=97.61 E-value=0.00011 Score=67.67 Aligned_cols=65 Identities=17% Similarity=0.188 Sum_probs=62.0
Q ss_pred CCChHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhc
Q 009716 3 IVPKETIEVIAQSI-GVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (528)
Q Consensus 3 ~~~~e~V~~iAes~-Gi~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~ 67 (528)
.||...|.++.+.. +..+++++|+..||.-+||...||++.|.+.+++.+|++++++||+.|++.
T Consensus 44 qFPVgrI~R~LK~~~~a~RVs~~A~VyLAAVLEYL~aEILelAgn~A~~~krkrItprhI~lAI~n 109 (149)
T 2f8n_K 44 QFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRN 109 (149)
T ss_dssp SSCHHHHHHHHHHTTSCSEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred eccHHHHHHHHHccccccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHhc
Confidence 58999999999996 999999999999999999999999999999999999999999999999974
No 34
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=97.55 E-value=0.00012 Score=66.08 Aligned_cols=65 Identities=17% Similarity=0.205 Sum_probs=61.7
Q ss_pred CCChHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhc
Q 009716 3 IVPKETIEVIAQSI-GVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (528)
Q Consensus 3 ~~~~e~V~~iAes~-Gi~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~ 67 (528)
.||..-|.++.+.- +..+++++++..||.-+||...||++.|.+.++|.+|++++++||+.|++.
T Consensus 25 qfPV~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hI~lAI~n 90 (131)
T 1id3_C 25 TFPVGRVHRLLRRGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRN 90 (131)
T ss_dssp SSCHHHHHHHHHTTCSCSEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred ecCHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHhc
Confidence 58999999999985 889999999999999999999999999999999999999999999999973
No 35
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=97.53 E-value=0.004 Score=63.22 Aligned_cols=129 Identities=11% Similarity=0.052 Sum_probs=94.0
Q ss_pred ccccchhhhHHHHHHHHhccccCCCCCCCchHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhH
Q 009716 247 HIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGA 326 (528)
Q Consensus 247 ~LepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~~y~~L~~RI~~tL~k~llDp~k~l~t~YGA 326 (528)
.+++|+..++|.++.++.... ....++.|..|..|+.+|..++..++. .+-+.++..+...|.| .....+++|
T Consensus 314 ~~~~~~~~l~p~l~~~l~~~d--~d~~~~~~~~r~~a~~~L~~l~~~~~~---~~~~~~~~~l~~~l~~--~~~~~r~aa 386 (462)
T 1ibr_B 314 YAKGALQYLVPILTQTLTKQD--ENDDDDDWNPCKAAGVCLMLLATCCED---DIVPHVLPFIKEHIKN--PDWRYRDAA 386 (462)
T ss_dssp HHHHHHHHHHHHHHHHTTCCC--SSCCTTCCSHHHHHHHHHHHHHHHTTT---THHHHHHHHHHHHTTC--SSHHHHHHH
T ss_pred HHHHHhhhccHHHHHHHHhcc--cccccccchHHHHHHHHHHHHHHhccH---HHHHHHHHHHHHHhcC--CChHHHHHH
Confidence 446788899998877753321 112457899999999999999999984 4567788888777765 467889999
Q ss_pred HHHHHhhChhhhhhhcccchHHHHHhhhhhhhhHhhhhhhhHHHHHHHHHHHHHhhhhh
Q 009716 327 IQGLAALGPSVVHLLILPNLELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQCAAGLC 385 (528)
Q Consensus 327 I~GL~aLG~~aVr~lilP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~v~~all~a~g~~ 385 (528)
+.+|.+++...-...+-|+++.+...|-+.+.+ .+..+|..|..+.|.+....+..
T Consensus 387 l~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d---~~~~Vr~~a~~~l~~~~~~~~~~ 442 (462)
T 1ibr_B 387 VMAFGCILEGPEPSQLKPLVIQAMPTLIELMKD---PSVVVRDTAAWTVGRICELLPEA 442 (462)
T ss_dssp HHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGC---SCHHHHHHHHHHHHHHHHHGGGG
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHhcccc
Confidence 999999975332233456677777777777643 35667888888888888777653
No 36
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=97.53 E-value=0.0001 Score=63.28 Aligned_cols=65 Identities=14% Similarity=0.265 Sum_probs=57.7
Q ss_pred CCChHHHHHHHHHcCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhc
Q 009716 3 IVPKETIEVIAQSIGV-YNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (528)
Q Consensus 3 ~~~~e~V~~iAes~Gi-~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~ 67 (528)
.||..-|++|.++-+- .+++.++.-.++.-+||.+.++++.|.+++++.+|++|+.+||..|++.
T Consensus 11 ~fPvaRIkrimK~~~~~~~vs~~A~v~la~a~E~Fi~el~~~A~~~a~~~krktI~~~di~~av~~ 76 (98)
T 1jfi_A 11 RFPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCIEL 76 (98)
T ss_dssp CCCHHHHHHHHTTSTTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---CBCHHHHHTTCC-
T ss_pred CCChHHHHHHHHcCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHhc
Confidence 5899999999998765 6899999999999999999999999999999999999999999999875
No 37
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=97.39 E-value=0.00028 Score=63.42 Aligned_cols=65 Identities=17% Similarity=0.125 Sum_probs=61.2
Q ss_pred CCChHHHHHHHHHcCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhc
Q 009716 3 IVPKETIEVIAQSIGV--YNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (528)
Q Consensus 3 ~~~~e~V~~iAes~Gi--~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~ 67 (528)
.||-.-|.++.+.-+. .+++.+++..||.-+||...||++.|.+.++|.+|++++++||..|++.
T Consensus 27 qfPV~ri~R~Lk~~~~a~~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItprhi~lAI~n 93 (128)
T 1f66_C 27 QFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRG 93 (128)
T ss_dssp SSCHHHHHHHHHHTSCSSCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHH
T ss_pred cCChHHHHHHHHHcccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHhc
Confidence 4899999999999983 4899999999999999999999999999999999999999999999974
No 38
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=97.33 E-value=0.00045 Score=61.26 Aligned_cols=66 Identities=18% Similarity=0.251 Sum_probs=60.6
Q ss_pred CCChHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhcc
Q 009716 3 IVPKETIEVIAQSI-GVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLR 68 (528)
Q Consensus 3 ~~~~e~V~~iAes~-Gi~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~~ 68 (528)
.+|..-|++|.++- ....++.++...++..+||.+.+|+.+|...++..||++++.+||..|++..
T Consensus 41 ~lPvaRIkrImK~d~~~~~is~eA~v~la~a~E~Fi~~L~~~A~~~a~~~krktI~~~di~~Av~~~ 107 (119)
T 4g92_C 41 QLPLARIKKVMKADPEVKMISAEAPILFAKGCDVFITELTMRAWIHAEDNKRRTLQRSDIAAALSKS 107 (119)
T ss_dssp SSCHHHHHHHHHTSTTCCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTC
T ss_pred CCCHHHHHHHHhhCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccCHHHHHHHHhcC
Confidence 48999999999863 4557999999999999999999999999999999999999999999999653
No 39
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=97.24 E-value=0.0055 Score=68.76 Aligned_cols=197 Identities=13% Similarity=0.182 Sum_probs=119.8
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHhhhcCCc--cccchhh---HHHHHHHHhhhcCCHHHHHHHHHHHHHhhcCCCc--c
Q 009716 175 YFDKIRELTVSRSNSTVFKQALLSLAMDSGL--HPLVPYF---TYFISEEVTRSLKNFSLLFALMRVARSLLRNPHI--H 247 (528)
Q Consensus 175 Yf~kIt~a~l~~~~~~~r~~AL~sL~tD~gL--~qLLPYf---v~FI~e~V~~nl~nl~~L~~llrmv~ALl~Np~L--~ 247 (528)
+...+.+.+ ..++...|+.|++.|..=... ..+.||+ +.++...... .+-..-...+....++..++.. .
T Consensus 216 ~l~~l~~~~-~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~--~~~~vr~~a~e~l~~l~~~~~~~~~ 292 (852)
T 4fdd_A 216 FIENLFALA-GDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQD--QDENVALEACEFWLTLAEQPICKDV 292 (852)
T ss_dssp HHHHHHHHH-TCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTC--SSHHHHHHHHHHHHHHTTSTTHHHH
T ss_pred HHHHHHHHc-CCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccC--CcHHHHHHHHHHHHHHhcchhHHHH
Confidence 334444433 345666777666554321110 1122332 2333222221 2333444455666667665543 3
Q ss_pred cccchhhhHHHHHHHHhccc---------cCCCCCC----CchHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhc
Q 009716 248 IEPYLHQMMPSVITCLVSKR---------LGNRFSD----NHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFL 314 (528)
Q Consensus 248 LepYLHqLlPsvLTCll~k~---------l~~~~~~----~hw~LRd~AA~lL~~I~~kf~~~y~~L~~RI~~tL~k~ll 314 (528)
+.+|+..++|.++.++.... ......+ ..|.+|..|+..|..++..++. .+-+.++..+...+.
T Consensus 293 ~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~---~~~~~l~~~l~~~l~ 369 (852)
T 4fdd_A 293 LVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD---ELLPHILPLLKELLF 369 (852)
T ss_dssp HTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGG---GGHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccH---HHHHHHHHHHHHHhc
Confidence 68999999999988874211 0011111 5899999999999999999874 466778888888877
Q ss_pred CCCCCchhhhhHHHHHHhhChhhhhhhcccchHHHHHhhhhhhhhHhhhhhhhHHHHHHHHHHHHHhhh
Q 009716 315 DPTKSLSQHYGAIQGLAALGPSVVHLLILPNLELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQCAAG 383 (528)
Q Consensus 315 Dp~k~l~t~YGAI~GL~aLG~~aVr~lilP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~v~~all~a~g 383 (528)
|+ ....+++|+.+|..++...-+ .+-|+++.++..|-+.+.+ .+..+|..|..+.|.+-..++
T Consensus 370 ~~--~~~~R~aa~~alg~i~~~~~~-~~~~~l~~~l~~l~~~l~d---~~~~Vr~~a~~~l~~l~~~~~ 432 (852)
T 4fdd_A 370 HH--EWVVKESGILVLGAIAEGCMQ-GMIPYLPELIPHLIQCLSD---KKALVRSITCWTLSRYAHWVV 432 (852)
T ss_dssp CS--SHHHHHHHHHHHHHTTTTTHH-HHGGGHHHHHHHHHHHTTC---SSHHHHHHHHHHHHHTHHHHH
T ss_pred CC--CHHHHHHHHHHHHHHHhcchH-HHHHHHHHHHHHHHHHcCC---CCHHHHHHHHHHHHHHHHHhc
Confidence 54 588899999999999765544 3457888888777777643 345566666666665554443
No 40
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=97.21 E-value=0.00073 Score=64.55 Aligned_cols=65 Identities=17% Similarity=0.163 Sum_probs=60.7
Q ss_pred CCChHHHHHHHHHc-CC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhc
Q 009716 3 IVPKETIEVIAQSI-GV-YNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (528)
Q Consensus 3 ~~~~e~V~~iAes~-Gi-~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~ 67 (528)
.||...|.++.+.. +. .+++++++..|+.-+||...||++.|.+.++|.||++++++||+.|++.
T Consensus 105 ~fPv~ri~R~lk~~~~a~~Rv~~~A~vyLaavLEyl~~eIlelA~n~a~~~~~~~I~p~~i~lAi~n 171 (192)
T 2jss_A 105 QFPVGRIKRYLKRHATGRTRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRG 171 (192)
T ss_dssp CSCHHHHHHHHHHTTCSSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHT
T ss_pred cCCHHHHHHHHHhcCccccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHhc
Confidence 58999999999987 54 5899999999999999999999999999999999999999999999974
No 41
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=97.11 E-value=0.0091 Score=65.87 Aligned_cols=180 Identities=16% Similarity=0.136 Sum_probs=122.6
Q ss_pred HHHHH---HHHHhhhcCCccccchhhHHHHHHHHhhhcCCHHHHHHHHHHHHHhhcCCC-cccccchhhhHHHHHHHHhc
Q 009716 190 TVFKQ---ALLSLAMDSGLHPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPH-IHIEPYLHQMMPSVITCLVS 265 (528)
Q Consensus 190 ~~r~~---AL~sL~tD~gL~qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~Np~-L~LepYLHqLlPsvLTCll~ 265 (528)
..|+. +|..|...-| ..++|.++.++.+.+.. .+...-...+..+.++..... -.+.+|+.+++|.++.++
T Consensus 346 ~~r~~a~~~L~~l~~~~~-~~~~~~l~~~l~~~l~~--~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l-- 420 (861)
T 2bpt_A 346 NVSMSAGACLQLFAQNCG-NHILEPVLEFVEQNITA--DNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLM-- 420 (861)
T ss_dssp HHHHHHHHHHHHHHHHHG-GGGHHHHHHHHHHHTTC--SSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGG--
T ss_pred cHHHHHHHHHHHHHHHcc-HhHHHHHHHHHHHHcCC--CChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHc--
Confidence 45554 4444555444 56677777777666543 356666667778888887654 456788888888877764
Q ss_pred cccCCCCCCCchHHHHHHHHHHHHHHHHhCCCc--hhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhChhhh---hh
Q 009716 266 KRLGNRFSDNHWDLRNFVADLIASICTRFGHVY--QNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVV---HL 340 (528)
Q Consensus 266 k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~~y--~~L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~~aV---r~ 340 (528)
.+.++.+|+.|+..|+.++...+... ...-+.++..+.+.+.|+ ......|..+|..+....- ..
T Consensus 421 -------~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~---~~v~~~a~~al~~l~~~~~~~~~~ 490 (861)
T 2bpt_A 421 -------NDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH---PKVATNCSWTIINLVEQLAEATPS 490 (861)
T ss_dssp -------GCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC---HHHHHHHHHHHHHHHHHHSSSSSC
T ss_pred -------CCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC---hHHHHHHHHHHHHHHHhcccccch
Confidence 24589999999999999999876432 334567788888888764 4556677777777754422 24
Q ss_pred hcccchHHHHHhhhhhhhhHhhhhhhhHHHHHHHHHHHHHhhhhh
Q 009716 341 LILPNLELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQCAAGLC 385 (528)
Q Consensus 341 lilP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~v~~all~a~g~~ 385 (528)
.+-|+++.++..|.+.+... ..+...|..|.+..+.+....|.-
T Consensus 491 ~l~~~~~~il~~L~~~l~~~-d~~~~vr~~a~~al~~l~~~~~~~ 534 (861)
T 2bpt_A 491 PIYNFYPALVDGLIGAANRI-DNEFNARASAFSALTTMVEYATDT 534 (861)
T ss_dssp GGGGGHHHHHHHHHHHHTCS-CCGGGHHHHHHHHHHHHHHHCCGG
T ss_pred hhHHHHHHHHHHHHHHHhCc-CcchHHHHHHHHHHHHHHHHcchh
Confidence 56688888888777766421 223456788888888888877653
No 42
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=97.07 E-value=0.0046 Score=68.42 Aligned_cols=180 Identities=17% Similarity=0.198 Sum_probs=119.5
Q ss_pred HHHHHH---HHHhhhcCCccccchhhHHHHHHHHhhhcCCHHHHHHHHHHHHHhhcCCC-cccccchhhhHHHHHHHHhc
Q 009716 190 TVFKQA---LLSLAMDSGLHPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPH-IHIEPYLHQMMPSVITCLVS 265 (528)
Q Consensus 190 ~~r~~A---L~sL~tD~gL~qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~Np~-L~LepYLHqLlPsvLTCll~ 265 (528)
..|+.| |..|...-+ ..++|.++.++.+.+.. .+...-...+..+.++..... -.+.+|+.+++|.++.++
T Consensus 343 ~~r~~a~~~l~~l~~~~~-~~~~~~~l~~l~~~l~~--~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l-- 417 (876)
T 1qgr_A 343 NPCKAAGVCLMLLATCCE-DDIVPHVLPFIKEHIKN--PDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELM-- 417 (876)
T ss_dssp CHHHHHHHHHHHHHHHHG-GGGHHHHHHHHHHHTTC--SSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHCc-HhhHHHHHHHHHHHccC--CChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh--
Confidence 345544 444444333 35567666666655433 356666667777788887655 346789999999998886
Q ss_pred cccCCCCCCCchHHHHHHHHHHHHHHHHhCCC--chhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhChhhh-----
Q 009716 266 KRLGNRFSDNHWDLRNFVADLIASICTRFGHV--YQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVV----- 338 (528)
Q Consensus 266 k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~~--y~~L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~~aV----- 338 (528)
.+.++.+|..|+..|+.++..++.. ....-+.++..+.+.+.|+ ....-.|..+|..+....-
T Consensus 418 -------~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~---~~v~~~a~~al~~l~~~~~~~~~~ 487 (876)
T 1qgr_A 418 -------KDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE---PRVASNVCWAFSSLAEAAYEAADV 487 (876)
T ss_dssp -------TCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC---HHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred -------CCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHhhhcccc
Confidence 2567999999999999999987642 1234567888888888763 3345567777777655432
Q ss_pred --------hhhcccchHHHHHhhhhhhhhHhhhhhhhHHHHHHHHHHHHHhhhh
Q 009716 339 --------HLLILPNLELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQCAAGL 384 (528)
Q Consensus 339 --------r~lilP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~v~~all~a~g~ 384 (528)
...+.|+++.++..|...+......+...|..+....+.|..++|.
T Consensus 488 ~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~ 541 (876)
T 1qgr_A 488 ADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAK 541 (876)
T ss_dssp TTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCS
T ss_pred ccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCch
Confidence 1347788888888777766432112345566777777777777664
No 43
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=96.89 E-value=0.019 Score=54.56 Aligned_cols=132 Identities=14% Similarity=0.104 Sum_probs=89.3
Q ss_pred HHHHHHHHHHhhcCCCcccccchhhhHHHHHHHHhccccCCCCCCCchHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHH
Q 009716 230 LFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTL 309 (528)
Q Consensus 230 L~~llrmv~ALl~Np~L~LepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~~y~~L~~RI~~tL 309 (528)
+..+-.++..|-. .+++|+.+++|.++.++- +.+-.+|+.|...|..++...+ + ..++..+
T Consensus 78 ~~~l~~la~~l~~----~~~~~~~~ilp~ll~~l~---------d~~~~vr~~a~~aL~~~~~~~~--~----~~ll~~l 138 (242)
T 2qk2_A 78 GKCLALLAKGLAK----RFSNYASACVPSLLEKFK---------EKKPNVVTALREAIDAIYASTS--L----EAQQESI 138 (242)
T ss_dssp HHHHHHHHHHHGG----GGHHHHHHHHHHHHHGGG---------CCCHHHHHHHHHHHHHHHTTSC--H----HHHHHHH
T ss_pred HHHHHHHHHHHhh----hHHHHHHHHHHHHHHHHc---------CCCHHHHHHHHHHHHHHHHcCC--H----HHHHHHH
Confidence 3444455544422 568999999999998862 3445899999999999998643 3 3466666
Q ss_pred HHHhcCCCCCchhhhhHHHHHHhh-ChhhhhhhcccchHHHHHhhhhhhhhHhhhhhhhHHHHHHHHHHHHHhhhhh
Q 009716 310 LHAFLDPTKSLSQHYGAIQGLAAL-GPSVVHLLILPNLELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQCAAGLC 385 (528)
Q Consensus 310 ~k~llDp~k~l~t~YGAI~GL~aL-G~~aVr~lilP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~v~~all~a~g~~ 385 (528)
...|.+ ++....-+++..|..+ ....-.....++++.+...|...+.+ .+..+|..|..+.+.|..++|.-
T Consensus 139 ~~~l~~--~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~D---~~~~VR~~A~~~l~~l~~~vg~~ 210 (242)
T 2qk2_A 139 VESLSN--KNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNE---PDPTVRDSSAEALGTLIKLMGDK 210 (242)
T ss_dssp HHHTTC--SCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHTS---SCHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHcC--CChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhcC---CChHHHHHHHHHHHHHHHHcCHH
Confidence 777664 3556677777776663 22111123456677777777666642 35678999999999999999963
No 44
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=96.77 E-value=0.003 Score=56.21 Aligned_cols=61 Identities=18% Similarity=0.204 Sum_probs=56.1
Q ss_pred HHHHHHHHcCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhcc
Q 009716 8 TIEVIAQSIGVY-NLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLR 68 (528)
Q Consensus 8 ~V~~iAes~Gi~-~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~~ 68 (528)
-|..+.++++-+ .+|.++...+-..|++....|..||.+++++.+|+|||..||..|.+++
T Consensus 38 YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLl 99 (123)
T 2nqb_D 38 YIYTVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLL 99 (123)
T ss_dssp HHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHh
Confidence 377788888876 6999999999999999999999999999999999999999999999874
No 45
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=96.72 E-value=0.054 Score=59.66 Aligned_cols=137 Identities=9% Similarity=0.123 Sum_probs=92.0
Q ss_pred cccccchhhhHHHHHHHHhccccCCCCCCCchHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCC------
Q 009716 246 IHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKS------ 319 (528)
Q Consensus 246 L~LepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~~y~~L~~RI~~tL~k~llDp~k~------ 319 (528)
-.+.+|++.++|.++.++-.. +.+..+|..|...++.|+..+|..+...-+.++..+.+.+.....+
T Consensus 672 ~~~~~~~~~l~~~l~~~l~~~-------~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~d~d~~ 744 (861)
T 2bpt_A 672 EDFRRYSDAMMNVLAQMISNP-------NARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPENGTLEAL 744 (861)
T ss_dssp GGGHHHHHHHHHHHHHHHHCT-------TCCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCCCSSSSHHHH
T ss_pred hhccchHHHHHHHHHHHhCCc-------cccHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCChHHH
Confidence 367899999999998887431 2356899999999999999999877666667777777776522100
Q ss_pred ---chhhhhHHHHHHh----hChhhhhhhcccchHHHHHhhhhhhhhHhhh-hhhhHHHHHHHHHHHHHhh-hhhhhhcc
Q 009716 320 ---LSQHYGAIQGLAA----LGPSVVHLLILPNLELYLKFLEPEMLLEKQK-NEMKRHEAWRVYGALQCAA-GLCVYDRL 390 (528)
Q Consensus 320 ---l~t~YGAI~GL~a----LG~~aVr~lilP~L~~y~~~Le~~l~~~~~~-~~~~r~ea~~v~~all~a~-g~~~~~~~ 390 (528)
...+-+++-.+.. +|.. ...+-|+++.+...|...+.+.... +...|.-|..+.|.|..+. |..+...+
T Consensus 745 ~~~~~vr~~~l~~~~~i~~~l~~~--~~~~~~~~~~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~~~~g~~~~~~~ 822 (861)
T 2bpt_A 745 DYQIKVLEAVLDAYVGIVAGLHDK--PEALFPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPDGSIKQFY 822 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTC--HHHHGGGHHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHHCTTSTTGGGT
T ss_pred HHHHHHHHHHHHHHHHHHHHHccC--HHHHHHHHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHHHcCCchHHHHH
Confidence 1122333333333 3321 2446788888888877776421102 5678889999999999999 77654444
Q ss_pred c
Q 009716 391 K 391 (528)
Q Consensus 391 ~ 391 (528)
+
T Consensus 823 ~ 823 (861)
T 2bpt_A 823 G 823 (861)
T ss_dssp T
T ss_pred h
Confidence 4
No 46
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=96.69 E-value=0.02 Score=64.20 Aligned_cols=173 Identities=18% Similarity=0.190 Sum_probs=118.0
Q ss_pred HHHHhhhcCCccccchhhHHHHHHHHhhhcCCHHHHHHHHHHHHHhhcCCCcccccchhhhHHHHHHHHhccccCCCCCC
Q 009716 195 ALLSLAMDSGLHPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSD 274 (528)
Q Consensus 195 AL~sL~tD~gL~qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~Np~L~LepYLHqLlPsvLTCll~k~l~~~~~~ 274 (528)
+|..|....| ..++|.++.++.+.+.. .+...-...+..+.++..+..-.+++|+.+++|.++.++ .+
T Consensus 344 ~L~~la~~~~-~~~~~~l~~~l~~~l~~--~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l---------~d 411 (852)
T 4fdd_A 344 ALDVLANVYR-DELLPHILPLLKELLFH--HEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCL---------SD 411 (852)
T ss_dssp HHHHHHHHHG-GGGHHHHHHHHHHHHTC--SSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHT---------TC
T ss_pred HHHHHHHhcc-HHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHc---------CC
Confidence 4555555444 46777777777766644 367666777888888888877788899999999998886 36
Q ss_pred CchHHHHHHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhChhhhhhhcccchHHHHHhh
Q 009716 275 NHWDLRNFVADLIASICTRFGH-VYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLILPNLELYLKFL 353 (528)
Q Consensus 275 ~hw~LRd~AA~lL~~I~~kf~~-~y~~L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~~aVr~lilP~L~~y~~~L 353 (528)
.++.+|..|+..|+.++...+. ........++..|.+.+.|+ ....+..|..+|..+....-. .+.|+++.++..|
T Consensus 412 ~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~--~~~vr~~a~~aL~~l~~~~~~-~l~~~l~~ll~~L 488 (852)
T 4fdd_A 412 KKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDS--NKRVQEAACSAFATLEEEACT-ELVPYLAYILDTL 488 (852)
T ss_dssp SSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHHHGG-GGGGGHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHhhH-hhHhHHHHHHHHH
Confidence 7899999999999999986543 22334567888888888765 446666777777777544333 3788888888877
Q ss_pred hhhhhhHhhhhhhhHHHHHHHHHHHHHhhhhh
Q 009716 354 EPEMLLEKQKNEMKRHEAWRVYGALQCAAGLC 385 (528)
Q Consensus 354 e~~l~~~~~~~~~~r~ea~~v~~all~a~g~~ 385 (528)
...+..... ....-+....+.|..++|.-
T Consensus 489 ~~~l~~~~~---~~~~~~~~ai~~l~~~~~~~ 517 (852)
T 4fdd_A 489 VFAFSKYQH---KNLLILYDAIGTLADSVGHH 517 (852)
T ss_dssp HHHHHHCCH---HHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHhCh---HHHHHHHHHHHHHHHHhhhh
Confidence 766643211 11122344455555555543
No 47
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=96.66 E-value=0.0039 Score=55.66 Aligned_cols=61 Identities=16% Similarity=0.173 Sum_probs=56.4
Q ss_pred HHHHHHHHcCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhcc
Q 009716 8 TIEVIAQSIGVY-NLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLR 68 (528)
Q Consensus 8 ~V~~iAes~Gi~-~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~~ 68 (528)
-|..+.++++-+ .+|.++...+-..|++....|..||.+++++.||++||..||..|.+++
T Consensus 41 YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLl 102 (126)
T 1tzy_B 41 YVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLL 102 (126)
T ss_dssp HHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 477888888876 6999999999999999999999999999999999999999999999874
No 48
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=96.64 E-value=0.037 Score=61.09 Aligned_cols=145 Identities=11% Similarity=0.078 Sum_probs=89.9
Q ss_pred HHHHHHHHHHhhcCCCcccccchhhhHHHHHHHHhccccCCCCCCCchHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHH
Q 009716 230 LFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTL 309 (528)
Q Consensus 230 L~~llrmv~ALl~Np~L~LepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~~y~~L~~RI~~tL 309 (528)
....++.+.+|+.+-.-.+.+|+.+++|.++.++-. .+++.+|..|..+++.|++..|......-+.|+..+
T Consensus 625 ~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~--------~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l 696 (876)
T 1qgr_A 625 QEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKN--------YAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLL 696 (876)
T ss_dssp HHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHH--------CTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC--------cchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 334556666666654556789999999999888732 147899999999999999999876666667889999
Q ss_pred HHHhcCCCCCchhhhhHHHHHHhhChhhhhhhcccchHHHHHhhhhhhhhHhh--h------hhhhHHHHHHHHHHHHHh
Q 009716 310 LHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLILPNLELYLKFLEPEMLLEKQ--K------NEMKRHEAWRVYGALQCA 381 (528)
Q Consensus 310 ~k~llDp~k~l~t~YGAI~GL~aLG~~aVr~lilP~L~~y~~~Le~~l~~~~~--~------~~~~r~ea~~v~~all~a 381 (528)
.+.|.++.......--++.++..+... +..-+.|+++.++..|...+..... . ....|..+.+.++.++.+
T Consensus 697 ~~~l~~~~~~~~~~~~~~~~l~~i~~~-~g~~~~~~l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~ 775 (876)
T 1qgr_A 697 LENLGNENVHRSVKPQILSVFGDIALA-IGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQG 775 (876)
T ss_dssp HHHHTCTTSCGGGHHHHHHHHHHHHHH-HGGGGGGGHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCccccHHhhHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999876433333333444444333211 1112456666666666555432100 0 013445555555555555
Q ss_pred hh
Q 009716 382 AG 383 (528)
Q Consensus 382 ~g 383 (528)
.|
T Consensus 776 ~~ 777 (876)
T 1qgr_A 776 LK 777 (876)
T ss_dssp HH
T ss_pred Hc
Confidence 54
No 49
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=96.44 E-value=0.071 Score=51.87 Aligned_cols=189 Identities=10% Similarity=0.069 Sum_probs=114.8
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHhhh-c----CCccc-cchh--hHHHHHHHHhhhcCCHHHHHHHHHHHHHhhcCCC-
Q 009716 175 YFDKIRELTVSRSNSTVFKQALLSLAM-D----SGLHP-LVPY--FTYFISEEVTRSLKNFSLLFALMRVARSLLRNPH- 245 (528)
Q Consensus 175 Yf~kIt~a~l~~~~~~~r~~AL~sL~t-D----~gL~q-LLPY--fv~FI~e~V~~nl~nl~~L~~llrmv~ALl~Np~- 245 (528)
|++.+ ...+-..|++||..|.. - +.+.. -.+| ++.-+...+.. =.|......-++.+..|...=.
T Consensus 21 f~~~l-----~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~-D~n~~v~~~A~~al~~la~~l~~ 94 (249)
T 2qk1_A 21 FQERI-----TSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQK-DANIQAVALAAQSVELICDKLKT 94 (249)
T ss_dssp HHHHH-----TCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHh-----hcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHHHhccc
Confidence 56654 23455567888866666 2 22321 1122 23333333311 1244333334444444443222
Q ss_pred cccc-cchhhhHHHHHHHHhccccCCCCCCCchHHHHHHHHHHHHHHHHhCCCchh--HHHHHHHHHHHHhcCCCCCchh
Q 009716 246 IHIE-PYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQN--LQSRVTRTLLHAFLDPTKSLSQ 322 (528)
Q Consensus 246 L~Le-pYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~~y~~--L~~RI~~tL~k~llDp~k~l~t 322 (528)
=.++ +|...++|+++..+=. ..=.+|+.|...|..||...+..... +. .++..+...|.+ +....
T Consensus 95 ~~f~~~y~~~llp~ll~~l~d---------kk~~V~~aa~~al~~i~~~~~~~~~~~~l~-~ll~~l~~~l~~--k~~~v 162 (249)
T 2qk1_A 95 PGFSKDYVSLVFTPLLDRTKE---------KKPSVIEAIRKALLTICKYYDPLASSGRNE-DMLKDILEHMKH--KTPQI 162 (249)
T ss_dssp TTSCHHHHHHHHHHHHHGGGC---------CCHHHHHHHHHHHHHHHHHSCTTCTTCTTH-HHHHHHHHHTTC--SSHHH
T ss_pred ccccHHHHHHHHHHHHHHHcC---------CCHHHHHHHHHHHHHHHHHccccccCCcHH-HHHHHHHHHHcC--CChHH
Confidence 2467 9999999998887522 23379999999999999976431111 22 366667777653 35688
Q ss_pred hhhHHHHHHhhChhhhh--hhcccch-HHHHHhhhhhhhhHhhhhhhhHHHHHHHHHHHHHhhhh
Q 009716 323 HYGAIQGLAALGPSVVH--LLILPNL-ELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQCAAGL 384 (528)
Q Consensus 323 ~YGAI~GL~aLG~~aVr--~lilP~L-~~y~~~Le~~l~~~~~~~~~~r~ea~~v~~all~a~g~ 384 (528)
..+++..|..+=..+-. ..+.|++ +.+...|...+.+ .+..+|..|..+.+++..++|.
T Consensus 163 k~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D---~~~~VR~aA~~~l~~i~~~vG~ 224 (249)
T 2qk1_A 163 RMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVND---TQPAIRTIGFESFAILIKIFGM 224 (249)
T ss_dssp HHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTC---SSHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHhCH
Confidence 88998888776433321 2345667 7777777777643 3667899999999999999996
No 50
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=96.39 E-value=0.037 Score=52.51 Aligned_cols=109 Identities=15% Similarity=0.138 Sum_probs=76.8
Q ss_pred HHHHHHHHHHhhcCCChHHHHH---HHHHhhhcCCccccchhhHHHHHHHHhhhcCCHHHHHHHHHHHHHhhcC--CCcc
Q 009716 173 QLYFDKIRELTVSRSNSTVFKQ---ALLSLAMDSGLHPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRN--PHIH 247 (528)
Q Consensus 173 Q~Yf~kIt~a~l~~~~~~~r~~---AL~sL~tD~gL~qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~N--p~L~ 247 (528)
..++..+.+.+ +..+...|.. ||..+-...++..++|.+...+. + +|...-...+.++..++.+ |.-.
T Consensus 97 ~~ilp~ll~~l-~d~~~~vr~~a~~aL~~~~~~~~~~~ll~~l~~~l~----~--~~~~vr~~~l~~l~~~l~~~~~~~~ 169 (242)
T 2qk2_A 97 SACVPSLLEKF-KEKKPNVVTALREAIDAIYASTSLEAQQESIVESLS----N--KNPSVKSETALFIARALTRTQPTAL 169 (242)
T ss_dssp HHHHHHHHHGG-GCCCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHTT----C--SCHHHHHHHHHHHHHHHTTCCGGGC
T ss_pred HHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc----C--CChHHHHHHHHHHHHHHHHcCCCCc
Confidence 33444444443 4445555553 66666667777777777655442 1 3565566678888887766 4456
Q ss_pred cccchhhhHHHHHHHHhccccCCCCCCCchHHHHHHHHHHHHHHHHhCCC
Q 009716 248 IEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHV 297 (528)
Q Consensus 248 LepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~~ 297 (528)
..+|++.++|.++.|+ .+.+|.+|+.|...|+.|++..|..
T Consensus 170 ~~~~l~~l~p~l~~~l---------~D~~~~VR~~A~~~l~~l~~~vg~~ 210 (242)
T 2qk2_A 170 NKKLLKLLTTSLVKTL---------NEPDPTVRDSSAEALGTLIKLMGDK 210 (242)
T ss_dssp CHHHHHHHHHHHHHHH---------TSSCHHHHHHHHHHHHHHHHHHCHH
T ss_pred cHHHHHHHHHHHHHHh---------cCCChHHHHHHHHHHHHHHHHcCHH
Confidence 7899999999999997 3778999999999999999988753
No 51
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=96.02 E-value=0.0056 Score=55.77 Aligned_cols=66 Identities=15% Similarity=0.158 Sum_probs=50.6
Q ss_pred CCChHHHHHHHHHcC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCccCHhhHHHHHhcc
Q 009716 3 IVPKETIEVIAQSIG-VYNLSSDVALALAPDVEYRVREIMQEAIKCM-RHAHRTVLTANDVDSALNLR 68 (528)
Q Consensus 3 ~~~~e~V~~iAes~G-i~~Lsdeaa~~La~dveyrlreIiqeA~kfm-~hskR~~Lt~~DI~~AL~~~ 68 (528)
.||..-|++|.++-. +..++.+|...++..+|+.|.+++..|...+ +..||++|+.+||..|+...
T Consensus 19 ~LPlaRIKrIMK~dpdv~~Is~eA~vliakA~ElFI~~Lt~~A~~~a~~~~kRKtI~~~Dl~~AV~~~ 86 (140)
T 2byk_A 19 FLPLSRVRTIMKSSMDTGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVNKN 86 (140)
T ss_dssp ----------CCSSSSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCEECHHHHHHHHHTC
T ss_pred CCCHHHHHHHHhcCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCHHHHHHHHhcC
Confidence 478888888887653 2359999999999999999999999999999 99999999999999999753
No 52
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=95.65 E-value=0.03 Score=53.37 Aligned_cols=60 Identities=18% Similarity=0.172 Sum_probs=55.2
Q ss_pred HHHHHHHHcCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhc
Q 009716 8 TIEVIAQSIGV-YNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (528)
Q Consensus 8 ~V~~iAes~Gi-~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~ 67 (528)
-|..+.++++- ..+|+++...+..-+..-+..|..+|.+++++.+|+++|..||..|++.
T Consensus 8 yi~kvLkqv~p~~~iS~~Am~~m~s~v~di~~rIa~eA~~L~~~~~r~Tit~~eIq~Avrl 68 (192)
T 2jss_A 8 YIYKVLKQTHPDTGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVRL 68 (192)
T ss_dssp HHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHH
T ss_pred HHHHHHcccCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Confidence 36778888875 5699999999999999999999999999999999999999999999985
No 53
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=95.55 E-value=0.072 Score=43.64 Aligned_cols=65 Identities=18% Similarity=0.288 Sum_probs=58.9
Q ss_pred CCChHHHHHHHHHcCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhc
Q 009716 3 IVPKETIEVIAQSIGVY-NLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (528)
Q Consensus 3 ~~~~e~V~~iAes~Gi~-~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~ 67 (528)
++++..+..+.+++.-. .+++++...|.+-+...+..++..|.+.++|-|-.+|.+.||...|+-
T Consensus 5 vl~k~~L~~Lv~~idp~~~ld~~vee~ll~lADdFV~~V~~~ac~lAKhR~s~~le~kDvql~Ler 70 (76)
T 1h3o_B 5 VLTKKKLQDLVREVDPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLER 70 (76)
T ss_dssp SSCHHHHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHH
T ss_pred cccHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHh
Confidence 57788888888887543 599999999999999999999999999999999999999999999975
No 54
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=95.40 E-value=0.5 Score=55.17 Aligned_cols=121 Identities=10% Similarity=0.113 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHhhcCCCc-ccccchhhhHHHHHHHHhccccCCCCCCCchHHHHHHHHHHHHHHHHhCC-------Cch
Q 009716 228 SLLFALMRVARSLLRNPHI-HIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGH-------VYQ 299 (528)
Q Consensus 228 ~~L~~llrmv~ALl~Np~L-~LepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~-------~y~ 299 (528)
......+..+..++.+-.- .+.+|+..++|.++.|+ .+..|.+|..|...++.+++.++. ...
T Consensus 492 ~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l---------~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~ 562 (1230)
T 1u6g_C 492 NLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACV---------GDPFYKITSEALLVTQQLVKVIRPLDQPSSFDAT 562 (1230)
T ss_dssp HHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHH---------TCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCH
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHH---------cccchHHHHHHHHHHHHHHHHhcCcccccccchH
Confidence 4444555666666654332 26789999999999876 245689999999999999999886 444
Q ss_pred hHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhChhhhhhhcccchHHHHHhhhhhhh
Q 009716 300 NLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLILPNLELYLKFLEPEML 358 (528)
Q Consensus 300 ~L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~~aVr~lilP~L~~y~~~Le~~l~ 358 (528)
.....|+..+.+.|.+.+.....+-.|+.+|..|-..+=. .+.|+++.++..|.+.+.
T Consensus 563 ~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~-~~~~~~~~~l~~L~~~l~ 620 (1230)
T 1u6g_C 563 PYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGD-NLGSDLPNTLQIFLERLK 620 (1230)
T ss_dssp HHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGG-GCCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCc-hhhhhHHHHHHHHHHHhc
Confidence 4556788888888854444556677888887776433222 245667777766665543
No 55
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=95.23 E-value=0.082 Score=44.52 Aligned_cols=68 Identities=24% Similarity=0.259 Sum_probs=60.8
Q ss_pred CCCChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCccCHhhHHHHHhccC
Q 009716 2 SIVPKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAH-RTVLTANDVDSALNLRN 69 (528)
Q Consensus 2 s~~~~e~V~~iAes~Gi~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hsk-R~~Lt~~DI~~AL~~~n 69 (528)
|-|++..||.+..++--..++++++..++--....+-||+++|.+++.+-. +.-|.+.||..|.+.+.
T Consensus 15 s~f~k~~vKrl~~~~~~~~v~~~v~i~v~glaKvfVgelVE~A~~V~~~~~~~~Pl~P~HireA~rrl~ 83 (89)
T 1bh9_B 15 SAFPKAAIKRLIQSITGTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMREAVRRLK 83 (89)
T ss_dssp CCCCHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHH
Confidence 458999999999888777899999999999999999999999999999875 44899999999988753
No 56
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=95.14 E-value=0.37 Score=56.22 Aligned_cols=127 Identities=11% Similarity=0.152 Sum_probs=85.6
Q ss_pred CcccccchhhhHHHHHHHHhccccCCCCCCCchHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhh
Q 009716 245 HIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHY 324 (528)
Q Consensus 245 ~L~LepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~~y~~L~~RI~~tL~k~llDp~k~l~t~Y 324 (528)
.-.+.||+..|+|.++.++-. .+.+..+|+.|...++.++...|..+...-++++..|...+.++ .+.-
T Consensus 558 ~~~~~~~~~~ll~~ll~~l~~-------~d~~~~vr~~a~~~lg~L~~~~g~~~~~~~~~~l~~L~~~l~~e----~~r~ 626 (1230)
T 1u6g_C 558 SFDATPYIKDLFTCTIKRLKA-------ADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNE----ITRL 626 (1230)
T ss_dssp CCCCHHHHHHHHHHHHHHHSC-------SSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHTTSS----SHHH
T ss_pred ccchHHHHHHHHHHHHHHHhc-------cCCCHHHHHHHHHHHHHHHHHhCchhhhhHHHHHHHHHHHhccc----hhHH
Confidence 346789999999999988632 24566999999999999999999887777789999988887644 3566
Q ss_pred hHHHHHHhhChhhhhhhcccchHHHHHhhhhhhhhHhhhhhhhHHHHHHHHHHHHHhhhhh
Q 009716 325 GAIQGLAALGPSVVHLLILPNLELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQCAAGLC 385 (528)
Q Consensus 325 GAI~GL~aLG~~aVr~lilP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~v~~all~a~g~~ 385 (528)
+++.++..+.....+.-+-|.++.+...|...+. ..+...|..|-...+.++...+..
T Consensus 627 ~~~~al~~i~~~~~~~~~~~~~~~i~~~L~~~l~---~~~~~~r~~a~~al~~l~~~~~~~ 684 (1230)
T 1u6g_C 627 TTVKALTLIAGSPLKIDLRPVLGEGVPILASFLR---KNQRALKLGTLSALDILIKNYSDS 684 (1230)
T ss_dssp HHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTT---SCCHHHHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHHhCccccchHHHHHHHHHHHHHHHH---hCCHHHHHHHHHHHHHHHhccccc
Confidence 7888877765422221122333333333333322 234456667777777777766543
No 57
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=94.43 E-value=0.72 Score=48.07 Aligned_cols=58 Identities=14% Similarity=0.094 Sum_probs=36.9
Q ss_pred CCchHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhCh
Q 009716 274 DNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGP 335 (528)
Q Consensus 274 ~~hw~LRd~AA~lL~~I~~kf~~~y~~L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~ 335 (528)
++++.+|..|+..|+.+++.++.. ...+.++..+.+.+.|+. ...+..|+.+|..++.
T Consensus 175 d~~~~VR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d~~--~~vr~~a~~~l~~l~~ 232 (588)
T 1b3u_A 175 DDTPMVRRAAASKLGEFAKVLELD--NVKSEIIPMFSNLASDEQ--DSVRLLAVEACVNIAQ 232 (588)
T ss_dssp CSCHHHHHHHHHHHHHHHHTSCHH--HHHHTHHHHHHHHHTCSC--HHHHTTHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcHH--hHHHHHHHHHHHHhcCCc--HHHHHHHHHHHHHHHH
Confidence 556788888888888888766642 234455666666666553 3555677777666543
No 58
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=94.35 E-value=0.63 Score=48.50 Aligned_cols=117 Identities=9% Similarity=0.106 Sum_probs=69.1
Q ss_pred chhhhHHHHHHHHhccccCCCCCCCchHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHH
Q 009716 251 YLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGL 330 (528)
Q Consensus 251 YLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~~y~~L~~RI~~tL~k~llDp~k~l~t~YGAI~GL 330 (528)
+...++|.++.++ .+++|.+|+.|+..++.++..+|... ....++..+.+.+.|+ +...+-.++.++
T Consensus 438 ~~~~l~~~l~~~l---------~d~~~~Vr~~a~~~l~~l~~~~~~~~--~~~~llp~l~~~~~~~--~~~~R~~a~~~l 504 (588)
T 1b3u_A 438 FDEKLNSLCMAWL---------VDHVYAIREAATSNLKKLVEKFGKEW--AHATIIPKVLAMSGDP--NYLHRMTTLFCI 504 (588)
T ss_dssp CCHHHHHHHHHGG---------GCSSHHHHHHHHHHHHHHHHHHCHHH--HHHHTHHHHHHTTTCS--CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh---------cCCcHHHHHHHHHHHHHHHHHhCchh--HHHHHHHHHHHHhhCC--CHHHHHHHHHHH
Confidence 3345677666653 35678999999999999999988642 3455666666555443 445556666666
Q ss_pred HhhChhhhhhhcccchHHHHHhhhhhhhhHhhhhhhhHHHHHHHHHHHHHhhhhhh
Q 009716 331 AALGPSVVHLLILPNLELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQCAAGLCV 386 (528)
Q Consensus 331 ~aLG~~aVr~lilP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~v~~all~a~g~~~ 386 (528)
..++...-... +++.++..|...+. ..+..+|..+.+..+.+...+|.-+
T Consensus 505 ~~l~~~~~~~~---~~~~~~~~l~~~l~---d~~~~Vr~~a~~~l~~l~~~~~~~~ 554 (588)
T 1b3u_A 505 NVLSEVCGQDI---TTKHMLPTVLRMAG---DPVANVRFNVAKSLQKIGPILDNST 554 (588)
T ss_dssp HHHHHHHHHHH---HHHHTHHHHHHGGG---CSCHHHHHHHHHHHHHHGGGSCHHH
T ss_pred HHHHHhcCHHH---HHHHHHHHHHhhCC---CCCchHHHHHHHHHHHHHHHhchhh
Confidence 66644321111 12222222222222 2345677788888888877666543
No 59
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=93.90 E-value=0.11 Score=50.97 Aligned_cols=64 Identities=16% Similarity=0.180 Sum_probs=56.9
Q ss_pred HHHHHHHHHcC----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhccCC
Q 009716 7 ETIEVIAQSIG----VYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNV 70 (528)
Q Consensus 7 e~V~~iAes~G----i~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~~nv 70 (528)
.-|+.||+... --+...+|..+|-+-.|.+|-.+.+++..|+.|+||-|+.+.||..|.+.++.
T Consensus 19 RLVREIaq~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEd~nLcaiHAkRVTim~kDiqLarrirg~ 86 (235)
T 2l5a_A 19 RLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMKKDMQLARRIRGQ 86 (235)
T ss_dssp HHHHHHHHTSCGGGTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSGGGTTHHHHHHTSSCS
T ss_pred HHHHHHHHHhccCCccceecHHHHHHHHHHHHHHHHHHHhhhHHHHhcccccccchhhHHHHHHHhhc
Confidence 34677888754 23788999999999999999999999999999999999999999999999875
No 60
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=93.63 E-value=0.95 Score=43.79 Aligned_cols=159 Identities=11% Similarity=0.087 Sum_probs=92.5
Q ss_pred HHHHHHHHhhcCCChHHHHHHH---HHhhhcCCcc--ccc-hhhHHHHHHHHhhhcCC--HHHHHHHHHHHHHhhc--CC
Q 009716 175 YFDKIRELTVSRSNSTVFKQAL---LSLAMDSGLH--PLV-PYFTYFISEEVTRSLKN--FSLLFALMRVARSLLR--NP 244 (528)
Q Consensus 175 Yf~kIt~a~l~~~~~~~r~~AL---~sL~tD~gL~--qLL-PYfv~FI~e~V~~nl~n--l~~L~~llrmv~ALl~--Np 244 (528)
.++-+...+-...+...+..|+ ..|.+ |++ .+- ||....+---+ .-+++ -.........+.+++. ||
T Consensus 61 ~~~~L~~~l~~D~n~~v~~~A~~al~~la~--~l~~~~f~~~y~~~llp~ll-~~l~dkk~~V~~aa~~al~~i~~~~~~ 137 (249)
T 2qk1_A 61 LLGIYGHIIQKDANIQAVALAAQSVELICD--KLKTPGFSKDYVSLVFTPLL-DRTKEKKPSVIEAIRKALLTICKYYDP 137 (249)
T ss_dssp HHHHHHHHHHHCSCHHHHHHHHHHHHHHHH--HHCTTTSCHHHHHHHHHHHH-HGGGCCCHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHH--hcccccccHHHHHHHHHHHH-HHHcCCCHHHHHHHHHHHHHHHHHccc
Confidence 4555555542445655565544 45553 333 344 66655554333 22222 3333445555566665 55
Q ss_pred CcccccchhhhHHHHHHHHhccccCCCCCCCchHHHHHHHHHHHHHHHHhCCC---chhHH-HHHHHHHHHHhcCCCCCc
Q 009716 245 HIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHV---YQNLQ-SRVTRTLLHAFLDPTKSL 320 (528)
Q Consensus 245 ~L~LepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~~---y~~L~-~RI~~tL~k~llDp~k~l 320 (528)
....+|+..+++.++.++= ...|.+|..+..+|+.++..++.. +...- +.|+..+.+.+-|++..
T Consensus 138 -~~~~~~l~~ll~~l~~~l~---------~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~- 206 (249)
T 2qk1_A 138 -LASSGRNEDMLKDILEHMK---------HKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPA- 206 (249)
T ss_dssp -TCTTCTTHHHHHHHHHHTT---------CSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHH-
T ss_pred -cccCCcHHHHHHHHHHHHc---------CCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHH-
Confidence 3355679999998887752 225899999999999999998852 22333 67778888888776443
Q ss_pred hhhhhHHHHHHhhChhhhhhhcccchHH
Q 009716 321 SQHYGAIQGLAALGPSVVHLLILPNLEL 348 (528)
Q Consensus 321 ~t~YGAI~GL~aLG~~aVr~lilP~L~~ 348 (528)
.+=.|+-+|.++..-+-+.-+.|+++.
T Consensus 207 -VR~aA~~~l~~i~~~vG~~~~~p~l~~ 233 (249)
T 2qk1_A 207 -IRTIGFESFAILIKIFGMNTFVKTLEH 233 (249)
T ss_dssp -HHHHHHHHHHHHHHHHCSGGGHHHHHH
T ss_pred -HHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 344666666664333323333444444
No 61
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=93.48 E-value=2 Score=43.16 Aligned_cols=186 Identities=12% Similarity=0.100 Sum_probs=104.1
Q ss_pred HHHHHHHHhhcCC--ChHHHHHHHHHhhhc-------CCccccchhhHHHHHHHHhhhcCCHHHHHHHHHHHHHhhcCCC
Q 009716 175 YFDKIRELTVSRS--NSTVFKQALLSLAMD-------SGLHPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPH 245 (528)
Q Consensus 175 Yf~kIt~a~l~~~--~~~~r~~AL~sL~tD-------~gL~qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~Np~ 245 (528)
.+..+...+ ... +...|.+|+..|..= ..-....+|++..+.+.+. -.+.......++.+..|..+-.
T Consensus 173 ll~~l~~~l-~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~~~vr~~~~~~l~~l~~~~~ 249 (462)
T 1ibr_B 173 ILTAIIQGM-RKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQ--CPDTRVRVAALQNLVKIMSLYY 249 (462)
T ss_dssp HHHHHHHHH-STTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTT--CSSHHHHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHh-CCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHH
Confidence 344444433 333 466777887776531 1111122344444433221 1345555567777777777766
Q ss_pred cccccchh-hhHHHHHHHHhccccCCCCCCCchHHHHHHHHHHHHHHHHh------------------CCCchhHH---H
Q 009716 246 IHIEPYLH-QMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRF------------------GHVYQNLQ---S 303 (528)
Q Consensus 246 L~LepYLH-qLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf------------------~~~y~~L~---~ 303 (528)
-.+.+|+. .++|.++.|+- +..-.+|..|...+..+|+.- .....-++ +
T Consensus 250 ~~~~~~~~~~l~~~~~~~~~---------~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (462)
T 1ibr_B 250 QYMETYMGPALFAITIEAMK---------SDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQ 320 (462)
T ss_dssp GGCTTTTTTTHHHHHHHHHH---------CSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHc---------CCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhh
Confidence 67889999 99998887762 335689999999999999752 11111222 5
Q ss_pred HHHHHHHHHhcCC-----CCCchhhhhHHHHHHhhChhhhhhhcccchHHHHHhhhhhhhhHhhhhhhhHHHHHHHHHHH
Q 009716 304 RVTRTLLHAFLDP-----TKSLSQHYGAIQGLAALGPSVVHLLILPNLELYLKFLEPEMLLEKQKNEMKRHEAWRVYGAL 378 (528)
Q Consensus 304 RI~~tL~k~llDp-----~k~l~t~YGAI~GL~aLG~~aVr~lilP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~v~~al 378 (528)
.++..+.+.+.+. ......+.+|..+|..++...-+ .++| .+...+...+.. .-|++..+-
T Consensus 321 ~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~-~~~~---~~~~~l~~~l~~----------~~~~~r~aa 386 (462)
T 1ibr_B 321 YLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED-DIVP---HVLPFIKEHIKN----------PDWRYRDAA 386 (462)
T ss_dssp HHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT-THHH---HHHHHHHHHTTC----------SSHHHHHHH
T ss_pred hccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH-HHHH---HHHHHHHHHhcC----------CChHHHHHH
Confidence 6666777776532 22345667888887776543221 1222 233333333321 136666666
Q ss_pred HHhhhhhh
Q 009716 379 QCAAGLCV 386 (528)
Q Consensus 379 l~a~g~~~ 386 (528)
+.|+|.+.
T Consensus 387 l~~l~~l~ 394 (462)
T 1ibr_B 387 VMAFGCIL 394 (462)
T ss_dssp HHHHHHTS
T ss_pred HHHHHHHh
Confidence 66776665
No 62
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=91.23 E-value=0.99 Score=37.57 Aligned_cols=63 Identities=11% Similarity=0.121 Sum_probs=56.7
Q ss_pred CCChHHHHHHHHHcCCC----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHh
Q 009716 3 IVPKETIEVIAQSIGVY----NLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALN 66 (528)
Q Consensus 3 ~~~~e~V~~iAes~Gi~----~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~ 66 (528)
.||+++|.+|.. ..+. ++++|+.+.+++.++-.++|.+..|..-++-.....|..+|++..+-
T Consensus 12 ~i~~~li~ril~-~~F~~~kTkIs~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~e~LEki~p 78 (84)
T 4dra_E 12 GFRKELVSRLLH-LHFKDDKTKVSGDALQLMVELLKVFVVEAAVRGVRQAQAEDALRVDVDQLEKVLP 78 (84)
T ss_dssp CCCHHHHHHHHH-TTCSSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred CCCHHHHHHHHH-HHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence 589999999999 6664 79999999999999999999999999988877888999999998764
No 63
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=90.53 E-value=2.4 Score=48.10 Aligned_cols=190 Identities=13% Similarity=0.117 Sum_probs=107.6
Q ss_pred HHHHhhhcCCccccchhhHHHHHHHHhhh---cCCHHHHHHHHHHHHHhhcCCCcccccchhhhHHHHHHHHhccccCCC
Q 009716 195 ALLSLAMDSGLHPLVPYFTYFISEEVTRS---LKNFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNR 271 (528)
Q Consensus 195 AL~sL~tD~gL~qLLPYfv~FI~e~V~~n---l~nl~~L~~llrmv~ALl~Np~L~LepYLHqLlPsvLTCll~k~l~~~ 271 (528)
+|..+..--| ..++|.+..++.+.+... -.++......+..+.++.....-...+++.++++ ++..+ ..
T Consensus 444 ~l~~~~~~~~-~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~-~l~~l-----~~- 515 (971)
T 2x1g_F 444 TFMYCYDVLN-DYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMR-VLAEI-----PY- 515 (971)
T ss_dssp HHHHHHTTCT-THHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHHHHHH-HHHHS-----CT-
T ss_pred HHHHHHHHHh-HHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHH-HHHhc-----Cc-
Confidence 4444444433 567788888887766541 1467777778888888887766566677777777 43332 11
Q ss_pred CCCCchHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhChhhhhhhcccchHHHHH
Q 009716 272 FSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLILPNLELYLK 351 (528)
Q Consensus 272 ~~~~hw~LRd~AA~lL~~I~~kf~~~y~~L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~~aVr~lilP~L~~y~~ 351 (528)
.+.|-.+|..|..+|+.++.-+.. .+..-+.++..+.+.| | ....+ -|...|..|- +..+..+.|+++.+..
T Consensus 516 -~d~~~~vr~~a~~~l~~~~~~l~~-~~~~l~~vl~~l~~~l-~--~~v~~--~A~~al~~l~-~~~~~~l~p~~~~ll~ 587 (971)
T 2x1g_F 516 -EKLNVKLLGTALETMGSYCNWLME-NPAYIPPAINLLVRGL-N--SSMSA--QATLGLKELC-RDCQLQLKPYADPLLN 587 (971)
T ss_dssp -TTSCHHHHHHHHHHHHHTHHHHC-----CHHHHHHHHHHHH-H--SSCHH--HHHHHHHHHH-HHCHHHHHHHHHHHHH
T ss_pred -cccCHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHh-C--hHHHH--HHHHHHHHHH-HHHHHhccccHHHHHH
Confidence 134678999999999999987664 3455667888888887 5 23322 2333333343 3445667899998888
Q ss_pred hhhhhhhhHhhhhhhhHHHHHHHHHHHHHhhhhhh-hhccchh-ccCCCcchhhc
Q 009716 352 FLEPEMLLEKQKNEMKRHEAWRVYGALQCAAGLCV-YDRLKTV-LLRPPKQSRWE 404 (528)
Q Consensus 352 ~Le~~l~~~~~~~~~~r~ea~~v~~all~a~g~~~-~~~~~~~-~~~~~~~~~~~ 404 (528)
.|...+... ...+.+-..++.++...+...- .+....+ -+.+|....|.
T Consensus 588 ~l~~~l~~~----~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~ 638 (971)
T 2x1g_F 588 ACHASLNTG----RMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQ 638 (971)
T ss_dssp HHHHHHHST----TSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCC----CCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 887766421 1223344455555554443211 1222222 22355556665
No 64
>1h3o_A Transcription initiation factor TFIID 135 kDa subunit; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=90.24 E-value=0.19 Score=41.00 Aligned_cols=44 Identities=16% Similarity=0.283 Sum_probs=36.8
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009716 8 TIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHA 51 (528)
Q Consensus 8 ~V~~iAes~Gi~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hs 51 (528)
=|..|+...|++++++|++..++-.+|.|+|.+++.-...++|-
T Consensus 11 ri~~I~~k~gl~~~~~dv~~~iS~a~qeRLr~llekl~~~a~~R 54 (75)
T 1h3o_A 11 RILEIGKKHGITELHPDVVSYVSHATQQRLQNLVEKISETAQQK 54 (75)
T ss_dssp HHHHHHHTTTCCEECTTHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHhcCCCcCChhHHHHhHHHHHHHHHHHHHHHHHHHHhh
Confidence 46789999999999999999999999999999999988888774
No 65
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=89.93 E-value=1.4 Score=49.86 Aligned_cols=181 Identities=13% Similarity=0.101 Sum_probs=107.9
Q ss_pred cccchhhHHHHHHHHhh--hcCCHHHHHHHHHHHHHhhcCCCcccccchhhhHHHHHHHHhccccCCCCCCCchHHHHHH
Q 009716 206 HPLVPYFTYFISEEVTR--SLKNFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFV 283 (528)
Q Consensus 206 ~qLLPYfv~FI~e~V~~--nl~nl~~L~~llrmv~ALl~Np~L~LepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~A 283 (528)
..+++.+..++.+.+.. +-.++......+..+.++.....-...+++.++++ .+. .++. +|-.+|..+
T Consensus 440 ~~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~----~l~--~l~~----~~~~vr~~~ 509 (963)
T 2x19_B 440 AELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIG----LIP--RISI----SNVQLADTV 509 (963)
T ss_dssp HHHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHH----HGG--GSCC----CSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHH----HHH--hCCC----CcHHHHHHH
Confidence 34667777777766632 22467777777888888887765555667766666 222 2322 477899999
Q ss_pred HHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhChhhhhhhcccchHHHHHhhhhhhhhHhhh
Q 009716 284 ADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLILPNLELYLKFLEPEMLLEKQK 363 (528)
Q Consensus 284 A~lL~~I~~kf~~~y~~L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~~aVr~lilP~L~~y~~~Le~~l~~~~~~ 363 (528)
..+++..++-+.. .+..-+.++..+.+.|.| ....--|...|..|-.+ .+..+.|+++.+...|...+... ..
T Consensus 510 ~~~l~~~~~~l~~-~~~~l~~vl~~l~~~l~~----~~V~~~A~~al~~l~~~-~~~~l~p~~~~il~~l~~~l~~~-~~ 582 (963)
T 2x19_B 510 MFTIGALSEWLAD-HPVMINSVLPLVLHALGN----PELSVSSVSTLKKICRE-CKYDLPPYAANIVAVSQDVLMKQ-IH 582 (963)
T ss_dssp HHHHHHTHHHHHH-CHHHHTTTHHHHHHHTTC----GGGHHHHHHHHHHHHHH-TGGGCTTTHHHHHHHHHHHHHTT-CS
T ss_pred HHHHHHHHHHHHh-CHHHHHHHHHHHHHHhCC----chHHHHHHHHHHHHHHH-HHHHHHhhHHHHHHHHHHHhccC-CC
Confidence 9999999875443 234555677777777755 23333456666666543 45568899999999887766421 11
Q ss_pred hhhhHHHHHHHHHHHHHhhhhhhhhccchh-ccCCCcchhhcc
Q 009716 364 NEMKRHEAWRVYGALQCAAGLCVYDRLKTV-LLRPPKQSRWES 405 (528)
Q Consensus 364 ~~~~r~ea~~v~~all~a~g~~~~~~~~~~-~~~~~~~~~~~~ 405 (528)
+...+..+-...|.++.+++ -.+..+.+ -+.+|....|..
T Consensus 583 ~~~~~~~~~eai~~i~~~~~--~~~~~~~~~~l~~~l~~~l~~ 623 (963)
T 2x19_B 583 KTSQCMWLMQALGFLLSALQ--VEEILKNLHSLISPYIQQLEK 623 (963)
T ss_dssp CHHHHHHHHHHHHHHHTTSC--HHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHHHHH
Confidence 11223333444444444443 12222222 234566677764
No 66
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=88.91 E-value=1.5 Score=36.28 Aligned_cols=63 Identities=21% Similarity=0.193 Sum_probs=55.7
Q ss_pred CCChHHHHHHHHHcCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHh
Q 009716 3 IVPKETIEVIAQSIGV----YNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALN 66 (528)
Q Consensus 3 ~~~~e~V~~iAes~Gi----~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~ 66 (528)
-||+++|.+|.+. .. +++++||.+.+++.++-.++|.+.-|..-++-.+-..|..+|++..+-
T Consensus 8 ~~~~~lI~ril~~-~f~~~ktrI~~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~~~LEki~p 74 (81)
T 3b0b_C 8 GFRKETVERLLRL-HFRDGRTRVNGDALLLMAELLKVFVREAAARAARQAQAEDLEKVDIEHVEKVLP 74 (81)
T ss_dssp CCCHHHHHHHHHH-HCCSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred CCCHHHHHHHHHH-HhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeecHHHHHHHHH
Confidence 4899999999887 43 479999999999999999999999999998877888999999998664
No 67
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=88.66 E-value=7.2 Score=38.69 Aligned_cols=139 Identities=19% Similarity=0.252 Sum_probs=90.8
Q ss_pred CCHHHHHHHHHHHHHhhc---CCCcccccc-hhhhHHHHHHHHhccccCCCCCCCchHHHHHHHHHHHHHHHHhCCCchh
Q 009716 225 KNFSLLFALMRVARSLLR---NPHIHIEPY-LHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQN 300 (528)
Q Consensus 225 ~nl~~L~~llrmv~ALl~---Np~L~LepY-LHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~~y~~ 300 (528)
+|...+...+.++.+|+. -....+..| .-.++|.+ +.|- | +..=.+|+.+-.++..++.-|+.
T Consensus 99 ~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~L----veKl-G----d~k~~vR~~~r~il~~l~~v~~~---- 165 (266)
T 2of3_A 99 TNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYL----LLKT-G----EAKDNMRTSVRDIVNVLSDVVGP---- 165 (266)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH----HHGG-G----CSSHHHHHHHHHHHHHHHHHHCH----
T ss_pred CCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHH----HHHh-C----CChHHHHHHHHHHHHHHHHHCCH----
Confidence 366666555555555532 234455555 35666654 4442 2 33347999999999999987764
Q ss_pred HHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhh----ChhhhhhhcccchHHHH---HhhhhhhhhHhhhhhhhHHHHHH
Q 009716 301 LQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAAL----GPSVVHLLILPNLELYL---KFLEPEMLLEKQKNEMKRHEAWR 373 (528)
Q Consensus 301 L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~aL----G~~aVr~lilP~L~~y~---~~Le~~l~~~~~~~~~~r~ea~~ 373 (528)
.+|...+...|. +|+.-+.-|.+..+..+ |.. | ..+. ..|-..+ ...|..+|..|..
T Consensus 166 --~~v~~~l~~g~k--sKN~R~R~e~l~~l~~li~~~G~~-------~--~~~l~~~~~ia~ll---~D~d~~VR~aAl~ 229 (266)
T 2of3_A 166 --LKMTPMLLDALK--SKNARQRSECLLVIEYYITNAGIS-------P--LKSLSVEKTVAPFV---GDKDVNVRNAAIN 229 (266)
T ss_dssp --HHHHHHHHHGGG--CSCHHHHHHHHHHHHHHHHHHCSG-------G--GGGGCHHHHHGGGG---GCSSHHHHHHHHH
T ss_pred --HHHHHHHHHHHc--cCCHHHHHHHHHHHHHHHHhcCCC-------c--cccccchHHHHHHH---cCCCHHHHHHHHH
Confidence 357777888885 67888888887776654 443 1 1122 2222222 2357889999999
Q ss_pred HHHHHHHhhhhhhhhccch
Q 009716 374 VYGALQCAAGLCVYDRLKT 392 (528)
Q Consensus 374 v~~all~a~g~~~~~~~~~ 392 (528)
+...+-.-+|.-++..+..
T Consensus 230 ~lve~y~~~Gd~v~k~lg~ 248 (266)
T 2of3_A 230 VLVACFKFEGDQMWKAAGR 248 (266)
T ss_dssp HHHHHHHHHTTHHHHHHCC
T ss_pred HHHHHHHHhhHHHHHHHhc
Confidence 9999999999998887754
No 68
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=88.14 E-value=6.7 Score=37.74 Aligned_cols=145 Identities=14% Similarity=0.058 Sum_probs=88.5
Q ss_pred CHHHHHHHHHHHHHhhcCCCccc--ccchhhhHHHHHHHHhccccCCCCCCCchHHHHHHHHHHHHHHHHhCCCchhHHH
Q 009716 226 NFSLLFALMRVARSLLRNPHIHI--EPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQS 303 (528)
Q Consensus 226 nl~~L~~llrmv~ALl~Np~L~L--epYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~~y~~L~~ 303 (528)
|.......+.++.+++.+-.... ..+....+..++..++.|.++.. .=.+|+.|...+..++...+.. .
T Consensus 68 N~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~----k~~~~~~a~~~l~~~~~~~~~~-----~ 138 (278)
T 4ffb_C 68 NVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSS----RATTKTQSMSCILSLCGLDTSI-----T 138 (278)
T ss_dssp SHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCC----CHHHHHHHHHHHHHHHHTSSSS-----H
T ss_pred hHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCc----cHHHHHHHHHHHHHHHHhcCcH-----H
Confidence 67777778888888887644432 33345566677777777766542 2378999998888888654432 2
Q ss_pred HHHHHHHHHhcCCCCCchhhhhHHHHHH----hhChhhhhhhcccchHHHHHhhhhhhhhHhhhhhhhHHHHHHHHHHHH
Q 009716 304 RVTRTLLHAFLDPTKSLSQHYGAIQGLA----ALGPSVVHLLILPNLELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQ 379 (528)
Q Consensus 304 RI~~tL~k~llDp~k~l~t~YGAI~GL~----aLG~~aVr~lilP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~v~~all 379 (528)
.+...+...+. +++....-+++..|. .+|...+.. -|.++.+.+.+-..+. ..|..+|..|..+.+.+.
T Consensus 139 ~~~e~l~~~l~--~Knpkv~~~~l~~l~~~l~~fg~~~~~~--k~~l~~i~~~l~k~l~---d~~~~VR~aA~~l~~~ly 211 (278)
T 4ffb_C 139 QSVELVIPFFE--KKLPKLIAAAANCVYELMAAFGLTNVNV--QTFLPELLKHVPQLAG---HGDRNVRSQTMNLIVEIY 211 (278)
T ss_dssp HHHHHHGGGGG--CSCHHHHHHHHHHHHHHHHHHTTTTCCH--HHHHHHHGGGHHHHHT---CSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--ccCHHHHHHHHHHHHHHHHHhCCCcCCc--hhHHHHHHHHHHHHHh---CCcHHHHHHHHHHHHHHH
Confidence 34555666654 566666667666654 356654421 1234444444444443 357889999999999999
Q ss_pred Hhhhhhh
Q 009716 380 CAAGLCV 386 (528)
Q Consensus 380 ~a~g~~~ 386 (528)
.-+|...
T Consensus 212 ~~~G~~~ 218 (278)
T 4ffb_C 212 KVTGNNS 218 (278)
T ss_dssp TC-----
T ss_pred HHhCcch
Confidence 9999654
No 69
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=87.77 E-value=7.9 Score=44.07 Aligned_cols=174 Identities=13% Similarity=0.042 Sum_probs=103.7
Q ss_pred HHHHhhhcCCccccchhhHHHHHHHHhh----hcCCHHHHHHHHHHHHHhhcC------------CCcccccchh-hhHH
Q 009716 195 ALLSLAMDSGLHPLVPYFTYFISEEVTR----SLKNFSLLFALMRVARSLLRN------------PHIHIEPYLH-QMMP 257 (528)
Q Consensus 195 AL~sL~tD~gL~qLLPYfv~FI~e~V~~----nl~nl~~L~~llrmv~ALl~N------------p~L~LepYLH-qLlP 257 (528)
.|..|...-+ ..++|-+..|+.+.+.. ...|+......+.++.|+..+ +.+.+++++. .++|
T Consensus 384 ~L~~l~~~~~-~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p 462 (960)
T 1wa5_C 384 FLKELKEKNE-VLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAP 462 (960)
T ss_dssp HHHHHHHHCH-HHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHH
T ss_pred HHHHHHHHcc-hhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHH
Confidence 4455555555 56777777777665542 134676777778888888643 2224555543 2344
Q ss_pred HHHHHHhccccCCCCCCCchHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhCh--
Q 009716 258 SVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGP-- 335 (528)
Q Consensus 258 svLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~~y~~L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~-- 335 (528)
.+ . .. .+.|-.+|..|..+++.++.-+. +..-..++..+.+.|.|+ +...+--|..+|..|-.
T Consensus 463 ~l-----~----~~-~~~~p~vr~~a~~~lg~~~~~~~---~~~l~~~l~~l~~~L~d~--~~~V~~~A~~Al~~~~~~~ 527 (960)
T 1wa5_C 463 DL-----T----SN-NIPHIILRVDAIKYIYTFRNQLT---KAQLIELMPILATFLQTD--EYVVYTYAAITIEKILTIR 527 (960)
T ss_dssp HH-----H----CS-SCSCHHHHHHHHHHHHHTGGGSC---HHHHHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHTTCB
T ss_pred Hh-----c----CC-CCCCceehHHHHHHHHHHHhhCC---HHHHHHHHHHHHHHhCCC--ChhHHHHHHHHHHHHHhcc
Confidence 22 1 11 13477999999999999887653 455677888888888876 35555566666666543
Q ss_pred --------hhhhhhcccchHHHHHhhhhhhhhHhhhhhhhHHHHHHHHHHHHHhhhhh
Q 009716 336 --------SVVHLLILPNLELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQCAAGLC 385 (528)
Q Consensus 336 --------~aVr~lilP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~v~~all~a~g~~ 385 (528)
+.-+..+.|+++.++..|-..+..... ...+..+.+.++.+|-..+..+
T Consensus 528 ~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~-~~~~~~~~e~l~~al~~vv~~~ 584 (960)
T 1wa5_C 528 ESNTSPAFIFHKEDISNSTEILLKNLIALILKHGS-SPEKLAENEFLMRSIFRVLQTS 584 (960)
T ss_dssp SCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCC-CHHHHTSCHHHHHHHHHHHHHH
T ss_pred cccccccccccHHHhhhhHHHHHHHHHHHHHhccC-CCCcccccHHHHHHHHHHHHHH
Confidence 123566889999999988776642100 0011123345555555555443
No 70
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=87.61 E-value=1.2 Score=52.04 Aligned_cols=199 Identities=10% Similarity=0.054 Sum_probs=122.4
Q ss_pred HHHHHHhhhcCCccccchhhHHHHHHHHhhhcCCHHHHHHHHHHHHHhhcCCCcc-cccchhhhHHHHHHHHhccccCCC
Q 009716 193 KQALLSLAMDSGLHPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHIH-IEPYLHQMMPSVITCLVSKRLGNR 271 (528)
Q Consensus 193 ~~AL~sL~tD~gL~qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~Np~L~-LepYLHqLlPsvLTCll~k~l~~~ 271 (528)
|++|-.+..--+- .+++.+...+.+.+..+-.++..+...+=.+.|+...+.-. ..+++++++|.++...=.++.
T Consensus 434 Rd~L~~l~~l~~~-~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~--- 509 (1023)
T 4hat_C 434 REVLVYLTHLNVI-DTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRG--- 509 (1023)
T ss_dssp HHHHHHHHHHCHH-HHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCS---
T ss_pred HHHHHHHhccCHH-HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhcccc---
Confidence 3555444432222 46666666666666543357888888888889999877654 679999999988876533321
Q ss_pred CCCCchHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhChhhhhhhc-------cc
Q 009716 272 FSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLI-------LP 344 (528)
Q Consensus 272 ~~~~hw~LRd~AA~lL~~I~~kf~~~y~~L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~~aVr~li-------lP 344 (528)
.+++-.+|+-++-+|+++++=+.. .+..-+.+++.+.+.+.|++.... -=|..+|..+..+.-+.++ -|
T Consensus 510 -~d~k~~v~~t~~~~lGry~~wl~~-~~~~L~~vl~~L~~~l~~~~~~v~--~~A~~al~~l~~~c~~~l~~~~~~e~~p 585 (1023)
T 4hat_C 510 -KDNKAVVASDIMYVVGQYPRFLKA-HWNFLRTVILKLFEFMHETHEGVQ--DMACDTFIKIVQKCKYHFVIQQPRESEP 585 (1023)
T ss_dssp -HHHHHHHHHHHHHHHHTCHHHHHH-CHHHHHHHHHHHHHHTTCSCHHHH--HHHHHHHHHHHHHHTHHHHSCCTTCSSC
T ss_pred -CcchHHHHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHhhcCCHHHH--HHHHHHHHHHHHHHHHHhhccCCCCCch
Confidence 244557888999999998875533 455666777888888876543333 2366777777776555554 47
Q ss_pred chHHHHHhhhhhhhhHhhhhhhhHHHHHHHHHHHHHhhhhhhhhccc--hh-ccCCCcchhhcc
Q 009716 345 NLELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQCAAGLCVYDRLK--TV-LLRPPKQSRWES 405 (528)
Q Consensus 345 ~L~~y~~~Le~~l~~~~~~~~~~r~ea~~v~~all~a~g~~~~~~~~--~~-~~~~~~~~~~~~ 405 (528)
++..+...+...... ........+|.|+-..+...-.+..+ .+ .+.+|....|..
T Consensus 586 ~~~~il~~l~~~~~~------l~~~~~~~lyeai~~vi~~~~~~~~~~~~l~~L~~~~~~~~~~ 643 (1023)
T 4hat_C 586 FIQTIIRDIQKTTAD------LQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDT 643 (1023)
T ss_dssp HHHHHHHTHHHHHTT------SCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHh------CCHHHHHHHHHHHHHHHHhCCCHhhHHHHHHHHHHhHHHHHHH
Confidence 888877777665431 22223345555544444333222211 11 234566677764
No 71
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=87.07 E-value=2.6 Score=39.01 Aligned_cols=142 Identities=9% Similarity=0.069 Sum_probs=79.8
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHhhh-----cCCc-----cccchhhHHHHHHHHhhhcCCHHHHHHHHHHHHHhhc-CC
Q 009716 176 FDKIRELTVSRSNSTVFKQALLSLAM-----DSGL-----HPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLR-NP 244 (528)
Q Consensus 176 f~kIt~a~l~~~~~~~r~~AL~sL~t-----D~gL-----~qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~-Np 244 (528)
|+.+++.+-+. +...+..|+..|+. ++.. ...+|.|+.++.+ .+.......+..+..|.. |+
T Consensus 14 ~~~~~~~L~s~-~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~------~~~~v~~~a~~~L~~l~~~~~ 86 (252)
T 4db8_A 14 LPQMTQQLNSD-DMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSS------PNEQILQEALWALSNIASGGN 86 (252)
T ss_dssp HHHHHHHHHSS-CSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGC------SCHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcC------CCHHHHHHHHHHHHHHhcCCH
Confidence 55555544433 33445555555532 2211 1345666555532 234455556666666765 33
Q ss_pred CcccccchhhhHHHHHHHHhccccCCCCCCCchHHHHHHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhcCCCCCchhh
Q 009716 245 HIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHV-YQNLQSRVTRTLLHAFLDPTKSLSQH 323 (528)
Q Consensus 245 ~L~LepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~~-y~~L~~RI~~tL~k~llDp~k~l~t~ 323 (528)
...-.-.-...+|.++.++- ++++.+|..|+..|+.|+...... -.-+...++..|.+.+.++ +....
T Consensus 87 ~~~~~i~~~g~i~~L~~lL~---------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~--~~~v~ 155 (252)
T 4db8_A 87 EQIQAVIDAGALPALVQLLS---------SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP--NEQIL 155 (252)
T ss_dssp HHHHHHHHTTHHHHHHHGGG---------CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCS--CHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHc---------CCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCC--CHHHH
Confidence 32211111236777766652 235799999999999998643222 1223344677888888754 55667
Q ss_pred hhHHHHHHhhCh
Q 009716 324 YGAIQGLAALGP 335 (528)
Q Consensus 324 YGAI~GL~aLG~ 335 (528)
.-|+.+|..|..
T Consensus 156 ~~a~~~L~~l~~ 167 (252)
T 4db8_A 156 QEALWALSNIAS 167 (252)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHc
Confidence 788888888854
No 72
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=86.63 E-value=1.7 Score=39.17 Aligned_cols=141 Identities=10% Similarity=0.090 Sum_probs=79.3
Q ss_pred HHHHHHHHhhcCCChHHHHHHH---HHhhh-cCCc------cccchhhHHHHHHHHhhhcCCHHHHHHHHHHHHHhhc-C
Q 009716 175 YFDKIRELTVSRSNSTVFKQAL---LSLAM-DSGL------HPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLR-N 243 (528)
Q Consensus 175 Yf~kIt~a~l~~~~~~~r~~AL---~sL~t-D~gL------~qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~-N 243 (528)
+|..+...+ ..++...+..|+ ..|.. ++.. ...+|.++.++.+ .+.......+..+..|.. |
T Consensus 13 ~~~~l~~LL-~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~------~~~~v~~~a~~~L~~l~~~~ 85 (210)
T 4db6_A 13 ELPQMVQQL-NSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSS------PNEQILQEALWALSNIASGG 85 (210)
T ss_dssp CHHHHHHHT-TCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC------SCHHHHHHHHHHHHHHTTSC
T ss_pred hhHHHHHHh-cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcC------CCHHHHHHHHHHHHHHhcCC
Confidence 445555543 444555555544 44442 2111 1356666666542 245555666677777764 3
Q ss_pred CCcccccchhhhHHHHHHHHhccccCCCCCCCchHHHHHHHHHHHHHHHHhCCCc-hhHHHHHHHHHHHHhcCCCCCchh
Q 009716 244 PHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVY-QNLQSRVTRTLLHAFLDPTKSLSQ 322 (528)
Q Consensus 244 p~L~LepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~~y-~~L~~RI~~tL~k~llDp~k~l~t 322 (528)
+...-.-.-+..+|.++.++- +.+..+|..|+..|..|+....... .-+...++..|.+.+.++ +...
T Consensus 86 ~~~~~~i~~~g~i~~L~~lL~---------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v 154 (210)
T 4db6_A 86 NEQIQAVIDAGALPALVQLLS---------SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP--NEQI 154 (210)
T ss_dssp HHHHHHHHHTTCHHHHHHHTT---------CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS--CHHH
T ss_pred cHHHHHHHHCCCHHHHHHHHc---------CCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCC--CHHH
Confidence 332211122457888888752 2347999999999999986211110 112344667788887754 4556
Q ss_pred hhhHHHHHHhh
Q 009716 323 HYGAIQGLAAL 333 (528)
Q Consensus 323 ~YGAI~GL~aL 333 (528)
..-|+.+|..|
T Consensus 155 ~~~a~~aL~~l 165 (210)
T 4db6_A 155 LQEALWALSNI 165 (210)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 67777777776
No 73
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=86.10 E-value=4.4 Score=42.43 Aligned_cols=111 Identities=11% Similarity=0.035 Sum_probs=72.0
Q ss_pred ccchhhHHHHHHHHhhhcCCHHHHHHHHHHHHHhhcCC-CcccccchhhhHHHHHHHHhccccCCCCCCCchHHHHHHHH
Q 009716 207 PLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNP-HIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVAD 285 (528)
Q Consensus 207 qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~Np-~L~LepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~ 285 (528)
..+|.++..+.+ .+.......+..+..|..+. ...-..+...++|.++..+- +....+|..|+.
T Consensus 215 ~~l~~L~~ll~~------~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~---------~~d~~v~~~a~~ 279 (530)
T 1wa5_B 215 NAMEPILGLFNS------NKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIY---------SMDTETLVDACW 279 (530)
T ss_dssp TCHHHHHHGGGS------CCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTT---------CCCHHHHHHHHH
T ss_pred CcHHHHHHHhcc------CCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHc---------CCCHHHHHHHHH
Confidence 567777766643 45667777788888888764 22224456778888877652 234689999999
Q ss_pred HHHHHHHHhCCCch-hHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhC
Q 009716 286 LIASICTRFGHVYQ-NLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALG 334 (528)
Q Consensus 286 lL~~I~~kf~~~y~-~L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~aLG 334 (528)
.|+.++........ -+...++..|.+.+.++ .......|+..|..+.
T Consensus 280 ~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~--~~~v~~~a~~~L~~l~ 327 (530)
T 1wa5_B 280 AISYLSDGPQEAIQAVIDVRIPKRLVELLSHE--STLVQTPALRAVGNIV 327 (530)
T ss_dssp HHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCS--CHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCC--ChhhHHHHHHHHHHHH
Confidence 99999853211111 12224566777777754 3556677888888874
No 74
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=86.02 E-value=2.8 Score=38.31 Aligned_cols=111 Identities=9% Similarity=0.041 Sum_probs=67.2
Q ss_pred cchhhHHHHHHHHhhhcCCHHHHHHHHHHHHHhhcC-CCcccccchhhhHHHHHHHHhccccCCCCCCCchHHHHHHHHH
Q 009716 208 LVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRN-PHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADL 286 (528)
Q Consensus 208 LLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~N-p~L~LepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~l 286 (528)
.+|.++.++.+ .+.......+..+..|..+ +...-.-.-+..+|.++.++- ++...+|..|+..
T Consensus 45 ~i~~L~~ll~~------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~---------~~~~~v~~~a~~~ 109 (252)
T 4hxt_A 45 GVEVLVKLLTS------TDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLT---------STDSEVQKEAARA 109 (252)
T ss_dssp HHHHHHHHTTC------SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTT---------CSSHHHHHHHHHH
T ss_pred CHHHHHHHHhC------CCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHc---------CCCHHHHHHHHHH
Confidence 46666655542 2455556667777777766 322222222346777777652 2357999999999
Q ss_pred HHHHHHHhCCC-chhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhCh
Q 009716 287 IASICTRFGHV-YQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGP 335 (528)
Q Consensus 287 L~~I~~kf~~~-y~~L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~ 335 (528)
|..++...... -.-+...++..+.+.+.+++ ......|+.+|..|..
T Consensus 110 L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~--~~~~~~a~~~L~~l~~ 157 (252)
T 4hxt_A 110 LANIASGPDEAIKAIVDAGGVEVLVKLLTSTD--SEVQKEAARALANIAS 157 (252)
T ss_dssp HHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSC--HHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCC--HHHHHHHHHHHHHHHc
Confidence 99999521110 11122245667888876543 5677888888888843
No 75
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=84.80 E-value=13 Score=40.00 Aligned_cols=76 Identities=14% Similarity=0.179 Sum_probs=56.2
Q ss_pred cccchhhhHHHHHHHHhccccCCCCCCCchHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHH
Q 009716 248 IEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAI 327 (528)
Q Consensus 248 LepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~~y~~L~~RI~~tL~k~llDp~k~l~t~YGAI 327 (528)
.......++|.+..|+ .+.+..+|..|+..+..|++.+....+. ..++..+.+.|.| ......++|+
T Consensus 115 ~~~~~~~l~~~l~~~L---------~d~~~~VRk~A~~al~~i~~~~p~~~~~--~~~~~~l~~lL~d--~d~~V~~~A~ 181 (591)
T 2vgl_B 115 VDKITEYLCEPLRKCL---------KDEDPYVRKTAAVCVAKLHDINAQMVED--QGFLDSLRDLIAD--SNPMVVANAV 181 (591)
T ss_dssp SGGGHHHHHHHHHHHS---------SCSCHHHHHHHHHHHHHHHHSSCCCHHH--HHHHHHHHHTTSC--SCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHc---------CCCChHHHHHHHHHHHHHHhhChhhccc--ccHHHHHHHHhCC--CChhHHHHHH
Confidence 3345556778888886 2557899999999999999965443221 3677888888765 4567889999
Q ss_pred HHHHhhChh
Q 009716 328 QGLAALGPS 336 (528)
Q Consensus 328 ~GL~aLG~~ 336 (528)
..|..++.+
T Consensus 182 ~aL~~i~~~ 190 (591)
T 2vgl_B 182 AALSEISES 190 (591)
T ss_dssp HHHHHHTTS
T ss_pred HHHHHHHhh
Confidence 999999764
No 76
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=83.96 E-value=15 Score=38.42 Aligned_cols=112 Identities=12% Similarity=0.056 Sum_probs=69.2
Q ss_pred cccchhhHHHHHHHHhhhcCCHHHHHHHHHHHHHhhcCCCccccc-chhhhHHHHHHHHhccccCCCCCCCchHHHHHHH
Q 009716 206 HPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHIHIEP-YLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVA 284 (528)
Q Consensus 206 ~qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~Np~L~Lep-YLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA 284 (528)
...+|.|+.++.+ .+.......+..+..|..+..-+-+. .-+..+|.++.++-. ....+|..|+
T Consensus 172 ~g~i~~Lv~lL~~------~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~---------~~~~v~~~a~ 236 (530)
T 1wa5_B 172 ADAVPLFIQLLYT------GSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNS---------NKPSLIRTAT 236 (530)
T ss_dssp TTCHHHHHHHHHH------CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGS---------CCHHHHHHHH
T ss_pred CCCHHHHHHHHcC------CCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhcc---------CCHHHHHHHH
Confidence 3568888887764 24555555666666666543211111 123567777776522 3568999999
Q ss_pred HHHHHHHHHh-CCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhC
Q 009716 285 DLIASICTRF-GHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALG 334 (528)
Q Consensus 285 ~lL~~I~~kf-~~~y~~L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~aLG 334 (528)
..|+.+|+.. ...-......++..|.+.+.+++ .....-|+.+|..|.
T Consensus 237 ~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d--~~v~~~a~~~L~~L~ 285 (530)
T 1wa5_B 237 WTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMD--TETLVDACWAISYLS 285 (530)
T ss_dssp HHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCC--HHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCC--HHHHHHHHHHHHHHh
Confidence 9999999743 22222334556777888776543 456667777777763
No 77
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=83.92 E-value=3.5 Score=46.97 Aligned_cols=106 Identities=10% Similarity=0.105 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHhhcCCCc--ccc--cchhhhH-HHHHHHHhccc--c---CCCC---------CCCchHHHHHHHHHHH
Q 009716 228 SLLFALMRVARSLLRNPHI--HIE--PYLHQMM-PSVITCLVSKR--L---GNRF---------SDNHWDLRNFVADLIA 288 (528)
Q Consensus 228 ~~L~~llrmv~ALl~Np~L--~Le--pYLHqLl-PsvLTCll~k~--l---~~~~---------~~~hw~LRd~AA~lL~ 288 (528)
......+.+..+++..+.. .+. +|+.+|+ +.++.++.-+. . ...+ .++.|.+|..|+.+|.
T Consensus 307 ~~~~~al~fl~~~~~~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~ 386 (960)
T 1wa5_C 307 ILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLK 386 (960)
T ss_dssp HHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHH
Confidence 4556677788888776553 122 8888888 77777764321 1 1111 2456799999999999
Q ss_pred HHHHHhCCCc-hhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhh
Q 009716 289 SICTRFGHVY-QNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAAL 333 (528)
Q Consensus 289 ~I~~kf~~~y-~~L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~aL 333 (528)
.++..|+... +.+-+-|...+.+.-.++......+.+|+..+.++
T Consensus 387 ~l~~~~~~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algai 432 (960)
T 1wa5_C 387 ELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTAL 432 (960)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHH
T ss_pred HHHHHcchhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHH
Confidence 9999988322 22223333333332224455677889999998888
No 78
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=83.57 E-value=2.6 Score=38.96 Aligned_cols=110 Identities=12% Similarity=0.154 Sum_probs=71.2
Q ss_pred cchhhHHHHHHHHhhhcCCHHHHHHHHHHHHHhhcCCCcccccch-hhhHHHHHHHHhccccCCCCCCCchHHHHHHHHH
Q 009716 208 LVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHIHIEPYL-HQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADL 286 (528)
Q Consensus 208 LLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~Np~L~LepYL-HqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~l 286 (528)
.+|.++.++.+ .+.......+..+..|..++....+..+ ...+|.++.++- +.++.+|..|+..
T Consensus 97 ~i~~L~~lL~~------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~---------~~~~~v~~~a~~~ 161 (252)
T 4db8_A 97 ALPALVQLLSS------PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS---------SPNEQILQEALWA 161 (252)
T ss_dssp HHHHHHHGGGC------SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGG---------CSCHHHHHHHHHH
T ss_pred CHHHHHHHHcC------CCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHh---------CCCHHHHHHHHHH
Confidence 45666555432 3566667778888888888776533333 357888877761 3467999999999
Q ss_pred HHHHHHHhCCCch-hHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhC
Q 009716 287 IASICTRFGHVYQ-NLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALG 334 (528)
Q Consensus 287 L~~I~~kf~~~y~-~L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~aLG 334 (528)
|..++........ -+...++..|.+.+.++ ......-|+..|..|.
T Consensus 162 L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~~L~~l~ 208 (252)
T 4db8_A 162 LSNIASGGNEQIQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIA 208 (252)
T ss_dssp HHHHTTSCHHHHHHHHHTTCHHHHHHGGGCS--SHHHHHHHHHHHHHHT
T ss_pred HHHHHcCChHHHHHHHHCCCHHHHHHHHCCC--CHHHHHHHHHHHHHHh
Confidence 9999963211100 12234566788887765 5566777888888773
No 79
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=83.31 E-value=11 Score=37.77 Aligned_cols=140 Identities=16% Similarity=0.187 Sum_probs=82.1
Q ss_pred HHHHHhhcCCChHHHHH---HHHHhhhcC--C-----ccccchhhHHHHHHHHhhhcCCHHHHHHHHHHHHHhhcCCCcc
Q 009716 178 KIRELTVSRSNSTVFKQ---ALLSLAMDS--G-----LHPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHIH 247 (528)
Q Consensus 178 kIt~a~l~~~~~~~r~~---AL~sL~tD~--g-----L~qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~Np~L~ 247 (528)
.+.+.+-...+...++. +|..|..+. . +..++|.++..+.+ .|..........+..|..+..-.
T Consensus 153 ~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~------~~~~v~~~a~~~L~~l~~~~~~~ 226 (450)
T 2jdq_A 153 PLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFV------SDTDVLADACWALSYLSDGPNDK 226 (450)
T ss_dssp HHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTTC------CCHHHHHHHHHHHHHHTSSSHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHcc------CCHHHHHHHHHHHHHHHCCCcHH
Confidence 34443322234555655 445555442 2 35677777776642 34555566666777777654222
Q ss_pred cccch-hhhHHHHHHHHhccccCCCCCCCchHHHHHHHHHHHHHHHHhCCCch-hHHHHHHHHHHHHhcCCCCCchhhhh
Q 009716 248 IEPYL-HQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQ-NLQSRVTRTLLHAFLDPTKSLSQHYG 325 (528)
Q Consensus 248 LepYL-HqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~~y~-~L~~RI~~tL~k~llDp~k~l~t~YG 325 (528)
....+ ..++|.++.++- +..|.+|..|+..|+.|+........ -+...++..|.+.+.++ ....+.-
T Consensus 227 ~~~~~~~~~i~~L~~ll~---------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~--~~~vr~~ 295 (450)
T 2jdq_A 227 IQAVIDAGVCRRLVELLM---------HNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSP--KESIKKE 295 (450)
T ss_dssp HHHHHHTTTHHHHHHHTT---------CSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCS--SHHHHHH
T ss_pred HHHHHHcCcHHHHHHHHC---------CCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCC--CHHHHHH
Confidence 22111 347787777652 34689999999999999863221111 12224677788887765 4566778
Q ss_pred HHHHHHhhC
Q 009716 326 AIQGLAALG 334 (528)
Q Consensus 326 AI~GL~aLG 334 (528)
|+..|..+.
T Consensus 296 a~~~L~~l~ 304 (450)
T 2jdq_A 296 ACWTISNIT 304 (450)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 888888885
No 80
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=82.97 E-value=15 Score=36.58 Aligned_cols=112 Identities=10% Similarity=0.068 Sum_probs=71.7
Q ss_pred ccchhhHHHHHHHHhhhcCCHHHHHHHHHHHHHhhcCC--CcccccchhhhHHHHHHHHhccccCCCCCCCchHHHHHHH
Q 009716 207 PLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNP--HIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVA 284 (528)
Q Consensus 207 qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~Np--~L~LepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA 284 (528)
..+|.++.++.+ -.+.......+..+..|..+. ... ..++..++|.++.++- +++..+|..|+
T Consensus 149 ~~i~~L~~~l~~-----~~~~~v~~~a~~~L~~l~~~~~~~~~-~~~~~~~l~~L~~~l~---------~~~~~v~~~a~ 213 (450)
T 2jdq_A 149 NILPPLLQLFSK-----QNRLTMTRNAVWALSNLCRGKSPPPE-FAKVSPCLNVLSWLLF---------VSDTDVLADAC 213 (450)
T ss_dssp TCHHHHHHHTTS-----CCCHHHHHHHHHHHHHHHCCSSSCCC-GGGTGGGHHHHHHHTT---------CCCHHHHHHHH
T ss_pred CCHHHHHHHhcC-----CCCHHHHHHHHHHHHHHhCCCCCCCC-HHHHHHHHHHHHHHHc---------cCCHHHHHHHH
Confidence 467777776642 134566667778888888764 333 3345889998888752 23468999999
Q ss_pred HHHHHHHHHhCCCch-hHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhCh
Q 009716 285 DLIASICTRFGHVYQ-NLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGP 335 (528)
Q Consensus 285 ~lL~~I~~kf~~~y~-~L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~ 335 (528)
..|+.++........ -....++..|.+.+.++ .......|+..|..+..
T Consensus 214 ~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~ 263 (450)
T 2jdq_A 214 WALSYLSDGPNDKIQAVIDAGVCRRLVELLMHN--DYKVVSPALRAVGNIVT 263 (450)
T ss_dssp HHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCS--CHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCC--chhHHHHHHHHHHHHhh
Confidence 999999863211001 11234566777777643 45667788888888743
No 81
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=82.26 E-value=47 Score=38.82 Aligned_cols=147 Identities=14% Similarity=0.227 Sum_probs=97.4
Q ss_pred HHHHhhhcCCccccchhhHHHHHHHHhhhcCCHHHHHHHHHHHHHhhcCCCc--ccccchhhhHHHHHHHHhccccCCCC
Q 009716 195 ALLSLAMDSGLHPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHI--HIEPYLHQMMPSVITCLVSKRLGNRF 272 (528)
Q Consensus 195 AL~sL~tD~gL~qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~Np~L--~LepYLHqLlPsvLTCll~k~l~~~~ 272 (528)
++.++-...+....+|+ . +.+.+...+.|-..-..-|-.+.+|+..... ..|||+-.++|.++.+.-
T Consensus 37 ~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~-------- 105 (986)
T 2iw3_A 37 EVASFLNGNIIEHDVPE--H-FFGELAKGIKDKKTAANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAG-------- 105 (986)
T ss_dssp HHHHHHTSSCSSSSCCH--H-HHHHHHHHHTSHHHHHHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTT--------
T ss_pred HHHHHHhccccccccch--h-HHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhc--------
Confidence 57776665666677775 3 4445555554432227778888899944433 779999999999888852
Q ss_pred CCCchHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhChhhhhhhcccchHHHHHh
Q 009716 273 SDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLILPNLELYLKF 352 (528)
Q Consensus 273 ~~~hw~LRd~AA~lL~~I~~kf~~~y~~L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~~aVr~lilP~L~~y~~~ 352 (528)
|..=..|+-|..-+..|+..+.. ..+ ..++..|.+.+. ...-..+.-||+..|..|-..+ ...+-=.++.+...
T Consensus 106 -dk~~~v~~aa~~~~~~~~~~~~~--~a~-~~~~~~~~~~~~-~~~kw~~k~~~l~~~~~~~~~~-~~~~~~~~~~~~p~ 179 (986)
T 2iw3_A 106 -NKDKEIQSVASETLISIVNAVNP--VAI-KALLPHLTNAIV-ETNKWQEKIAILAAFSAMVDAA-KDQVALRMPELIPV 179 (986)
T ss_dssp -CSSHHHHHHHHHHHHHHHHHSCG--GGH-HHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred -CCchHHHHHHHHHHHHHHHhCCH--HHH-HHHHHHHHHHhc-cccchHHHHHHHHHHHHHHHHh-HHHHHHhccchhcc
Confidence 22337999999999999998875 233 677777777774 3335888899999988886544 23233344444444
Q ss_pred hhhhhh
Q 009716 353 LEPEML 358 (528)
Q Consensus 353 Le~~l~ 358 (528)
+...|-
T Consensus 180 ~~~~~~ 185 (986)
T 2iw3_A 180 LSETMW 185 (986)
T ss_dssp HHHHTT
T ss_pred hHhhcc
Confidence 444443
No 82
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=81.57 E-value=7 Score=37.61 Aligned_cols=127 Identities=16% Similarity=0.178 Sum_probs=68.6
Q ss_pred HHHHHHhhcCCChHHHHHHHHHhhhcCCccccchhhHHHHHHHHhhhcCCHHHHHHHHHHHHHhhcC---CCcccccchh
Q 009716 177 DKIRELTVSRSNSTVFKQALLSLAMDSGLHPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRN---PHIHIEPYLH 253 (528)
Q Consensus 177 ~kIt~a~l~~~~~~~r~~AL~sL~tD~gL~qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~N---p~L~LepYLH 253 (528)
..+++-+++......+..|++.|-.=-........++..+..... .+|.......+..+..++.+ ..+...+.+-
T Consensus 105 ~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~~~e~l~~~l~--~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~ 182 (278)
T 4ffb_C 105 PLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQSVELVIPFFE--KKLPKLIAAAANCVYELMAAFGLTNVNVQTFLP 182 (278)
T ss_dssp HHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHHHHHHHGGGGG--CSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHH
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh--ccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHH
Confidence 334444455444555555554443211111112222233322222 25666666666666666655 4455666777
Q ss_pred hhHHHHHHHHhccccCCCCCCCchHHHHHHHHHHHHHHHHhCCCc--------hhHHHHHHHHHHHHhc
Q 009716 254 QMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVY--------QNLQSRVTRTLLHAFL 314 (528)
Q Consensus 254 qLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~~y--------~~L~~RI~~tL~k~ll 314 (528)
.+++.+..|+= +..=.+|+-|.+++..+.+..|... .+|++-..+.|-+.|-
T Consensus 183 ~i~~~l~k~l~---------d~~~~VR~aA~~l~~~ly~~~G~~~~~~~~~~l~~lkp~~~k~le~~f~ 242 (278)
T 4ffb_C 183 ELLKHVPQLAG---------HGDRNVRSQTMNLIVEIYKVTGNNSDLLEEILFKKLKPIQVKDLHKLFA 242 (278)
T ss_dssp HHGGGHHHHHT---------CSSHHHHHHHHHHHHHHHTC-----------CTTSSCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHh---------CCcHHHHHHHHHHHHHHHHHhCcchhhhhhhhhhcCCHHHHHHHHHHHH
Confidence 77777777752 2234899999999999999887432 4566666666666653
No 83
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=81.34 E-value=36 Score=33.66 Aligned_cols=158 Identities=11% Similarity=0.047 Sum_probs=90.0
Q ss_pred ccchhhHHHHHHHHhhhcCCHHHHHHHHHHHHHhhcCCCcccccch-hhhHHHHHHHHhccccCCCCCCCchHHHHHHHH
Q 009716 207 PLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHIHIEPYL-HQMMPSVITCLVSKRLGNRFSDNHWDLRNFVAD 285 (528)
Q Consensus 207 qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~Np~L~LepYL-HqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~ 285 (528)
..+|.|+..+... .+.......+..+..|+.|..-..+..+ +..+|.++.++-. .+..+|..|+.
T Consensus 124 g~l~~Ll~LL~~~-----~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~---------~d~~v~~~A~~ 189 (296)
T 1xqr_A 124 GALRKLLRLLDRD-----ACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQ---------QVQKLKVKSAF 189 (296)
T ss_dssp THHHHHHHHHHHC-----SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHS---------SCHHHHHHHHH
T ss_pred CCHHHHHHHHccC-----CCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcC---------CCHHHHHHHHH
Confidence 3577887777531 1344555566666777766544343333 4788888887622 35689999999
Q ss_pred HHHHHHHHhCCCch-hHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhh---ChhhhhhhcccchHHHHHhhhhhhhhHh
Q 009716 286 LIASICTRFGHVYQ-NLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAAL---GPSVVHLLILPNLELYLKFLEPEMLLEK 361 (528)
Q Consensus 286 lL~~I~~kf~~~y~-~L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~aL---G~~aVr~lilP~L~~y~~~Le~~l~~~~ 361 (528)
+|+.++......-. -+...++..|.+.|.+++ ...+.-|+.+|..+ ++.+++.+--+. ..|...|+..+.
T Consensus 190 aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d--~~v~~~al~aL~~l~~~~~~~~~~~~~~~-~~l~~lL~~~~~--- 263 (296)
T 1xqr_A 190 LLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEH--SPFHEHVLGALCSLVTDFPQGVRECREPE-LGLEELLRHRCQ--- 263 (296)
T ss_dssp HHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCC--STHHHHHHHHHHHHHTTCHHHHHHHHCGG-GCHHHHHHHHHH---
T ss_pred HHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCC--hhHHHHHHHHHHHHHhCChhHHHHHhccH-HHHHHHHHHHHH---
Confidence 99999986221111 123345667777776553 34444555555544 566666543321 123344444321
Q ss_pred hhhhhhHHH-HHHHHHHHHHhhhhhhh
Q 009716 362 QKNEMKRHE-AWRVYGALQCAAGLCVY 387 (528)
Q Consensus 362 ~~~~~~r~e-a~~v~~all~a~g~~~~ 387 (528)
....+| ...+|.-....+.+|+-
T Consensus 264 ---~lq~~e~~~e~~~~~~~il~~~f~ 287 (296)
T 1xqr_A 264 ---LLQQHEEYQEELEFCEKLLQTCFS 287 (296)
T ss_dssp ---HHTTCGGGHHHHHHHHHHHHHHCC
T ss_pred ---HccchHHHHHHHHHHHHHHHHHcC
Confidence 112234 46667767777777764
No 84
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=80.92 E-value=30 Score=30.74 Aligned_cols=49 Identities=20% Similarity=0.205 Sum_probs=25.3
Q ss_pred CchHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhCh
Q 009716 275 NHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGP 335 (528)
Q Consensus 275 ~hw~LRd~AA~lL~~I~~kf~~~y~~L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~ 335 (528)
.++.+|..|+..|+.+.. + .....|.+.+.|+ .......|+.+|..+|.
T Consensus 88 ~~~~vr~~a~~aL~~~~~------~----~~~~~L~~~l~d~--~~~vr~~a~~aL~~~~~ 136 (201)
T 3ltj_A 88 EDGWVRQSAAVALGQIGD------E----RAVEPLIKALKDE--DWFVRIAAAFALGEIGD 136 (201)
T ss_dssp SSHHHHHHHHHHHHHHCC------G----GGHHHHHHHTTCS--SHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhCc------H----HHHHHHHHHHcCC--CHHHHHHHHHHHHHhCC
Confidence 445666666666665421 1 2333344444433 34455666666666654
No 85
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=79.51 E-value=5.5 Score=42.92 Aligned_cols=159 Identities=11% Similarity=0.047 Sum_probs=84.1
Q ss_pred hHHHHHHHH---HhhhcCCccccchhhHHHHHHHHhhhcCCHHHHHHHHHHHHHhhcCCCcccccchhhhHHHHHHHHhc
Q 009716 189 STVFKQALL---SLAMDSGLHPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVS 265 (528)
Q Consensus 189 ~~~r~~AL~---sL~tD~gL~qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~Np~L~LepYLHqLlPsvLTCll~ 265 (528)
...|++||+ .+.++..++.+++.+..|+.+ .+...-..+.+-+..+..+ ..+.....++.++..+-
T Consensus 332 ~~Ir~~al~~L~~l~~~~nv~~iv~~L~~~l~~------~d~~~r~~~v~aI~~la~~----~~~~~~~~v~~Ll~ll~- 400 (591)
T 2vgl_B 332 IYVKLEKLDIMIRLASQANIAQVLAELKEYATE------VDVDFVRKAVRAIGRCAIK----VEQSAERCVSTLLDLIQ- 400 (591)
T ss_dssp HHHHHHHHHHHHHTCCSSTHHHHHHHHHHHTTS------SCHHHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHCChhhHHHHHHHHHHHHhc------CCHHHHHHHHHHHHHHHHh----ChhHHHHHHHHHHHHHc-
Confidence 334454443 344555566666666555432 1233223333444444433 12233445555544441
Q ss_pred cccCCCCCCCchHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhChhhhhhhcccc
Q 009716 266 KRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLILPN 345 (528)
Q Consensus 266 k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~~y~~L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~~aVr~lilP~ 345 (528)
+....+|+.+...+..|+++|... +..++..|.+.+.+ ......+..+++.|..+|.... +
T Consensus 401 --------~~~~~v~~e~i~~l~~ii~~~p~~----~~~~v~~L~~~l~~-~~~~~~~~~~~wilGey~~~~~------~ 461 (591)
T 2vgl_B 401 --------TKVNYVVQEAIVVIRDIFRKYPNK----YESIIATLCENLDS-LDEPDARAAMIWIVGEYAERID------N 461 (591)
T ss_dssp --------TCCHHHHHHHHHHHHHHHHHSCSS----CCTTHHHHHHTTTT-CCSHHHHHHHHHHHHTTCTTCT------T
T ss_pred --------ccchHHHHHHHHHHHHHHHHCcch----HHHHHHHHHHHHHh-ccCHHHHHHHHHHHHccccccc------C
Confidence 123467788888888888886553 44555666666543 2333457788888888887542 3
Q ss_pred hHHHHHhhhhhhhhHhhhhhhhHHHHHHHHHHHHHhhhhhhh
Q 009716 346 LELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQCAAGLCVY 387 (528)
Q Consensus 346 L~~y~~~Le~~l~~~~~~~~~~r~ea~~v~~all~a~g~~~~ 387 (528)
.+.+++.+-..+.. |-..|..+++.|+.+++.
T Consensus 462 ~~~~l~~l~~~~~~----------~~~~vr~~~l~a~~Kl~~ 493 (591)
T 2vgl_B 462 ADELLESFLEGFHD----------ESTQVQLTLLTAIVKLFL 493 (591)
T ss_dssp HHHHHHHHSTTCSS----------SCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcc----------CCHHHHHHHHHHHHHHHh
Confidence 34444443332221 123466777777777664
No 86
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=79.10 E-value=10 Score=34.42 Aligned_cols=110 Identities=9% Similarity=0.035 Sum_probs=68.4
Q ss_pred cchhhHHHHHHHHhhhcCCHHHHHHHHHHHHHhh-cCCCcccccchhhhHHHHHHHHhccccCCCCCCCchHHHHHHHHH
Q 009716 208 LVPYFTYFISEEVTRSLKNFSLLFALMRVARSLL-RNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADL 286 (528)
Q Consensus 208 LLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl-~Np~L~LepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~l 286 (528)
.+|.++.++.+ .+.......+..+..|. .++...-.-.-+..+|.++.++- ++++.+|..|+..
T Consensus 87 ~i~~l~~ll~~------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~---------~~~~~~~~~a~~~ 151 (252)
T 4hxt_A 87 GVEVLVKLLTS------TDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLT---------STDSEVQKEAARA 151 (252)
T ss_dssp HHHHHHHHTTC------SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTT---------CSCHHHHHHHHHH
T ss_pred CHHHHHHHHcC------CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHc---------CCCHHHHHHHHHH
Confidence 45666555542 35666667777888887 44443222222456787777652 3458999999999
Q ss_pred HHHHHHHhCCC-chhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhC
Q 009716 287 IASICTRFGHV-YQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALG 334 (528)
Q Consensus 287 L~~I~~kf~~~-y~~L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~aLG 334 (528)
|..++...... ..-+...++..|.+.+.++ .......|+..|..+.
T Consensus 152 L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~~L~~l~ 198 (252)
T 4hxt_A 152 LANIASGPDEAIKAIVDAGGVEVLVKLLTST--DSEVQKEAARALANIA 198 (252)
T ss_dssp HHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHCcCHHHHHHHHCCC--CHHHHHHHHHHHHHHH
Confidence 99998632111 1122334677788887643 3566777888888774
No 87
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=77.94 E-value=10 Score=42.88 Aligned_cols=85 Identities=11% Similarity=0.104 Sum_probs=54.8
Q ss_pred HHHHHHHHHHhhcCCCcccccchhhhHHHHHHHHhccccCCCCCCCchHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHH
Q 009716 230 LFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTL 309 (528)
Q Consensus 230 L~~llrmv~ALl~Np~L~LepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~~y~~L~~RI~~tL 309 (528)
+..+-++.+.+-.|+ .|+..++|.++.++ . + .++..|+..+..+|+.++..-..--+.|+..|
T Consensus 527 ~~~l~~~~~~l~~~~-----~~l~~vl~~l~~~l-~-----~------~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l 589 (971)
T 2x1g_F 527 LETMGSYCNWLMENP-----AYIPPAINLLVRGL-N-----S------SMSAQATLGLKELCRDCQLQLKPYADPLLNAC 589 (971)
T ss_dssp HHHHHHTHHHHC---------CHHHHHHHHHHHH-H-----S------SCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCH-----HHHHHHHHHHHHHh-C-----h------HHHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 445566666666665 68889999888887 2 1 46999999999999887654434445677777
Q ss_pred HHHhcCCCCC---chhhhhHHHHHH
Q 009716 310 LHAFLDPTKS---LSQHYGAIQGLA 331 (528)
Q Consensus 310 ~k~llDp~k~---l~t~YGAI~GL~ 331 (528)
.+.+..+.-. ....|.||.-+.
T Consensus 590 ~~~l~~~~~~~~~~~~~~~ai~~i~ 614 (971)
T 2x1g_F 590 HASLNTGRMKNSDSVRLMFSIGKLM 614 (971)
T ss_dssp HHHHHSTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCChHHHHHHHHHHHHHH
Confidence 7777654322 334565555544
No 88
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=77.92 E-value=20 Score=33.70 Aligned_cols=14 Identities=21% Similarity=0.093 Sum_probs=6.7
Q ss_pred chHHHHHHHHHHHH
Q 009716 276 HWDLRNFVADLIAS 289 (528)
Q Consensus 276 hw~LRd~AA~lL~~ 289 (528)
++.+|..|+..|+.
T Consensus 141 ~~~vR~~a~~aL~~ 154 (280)
T 1oyz_A 141 STNVRRATAFAISV 154 (280)
T ss_dssp CHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHh
Confidence 34455555544443
No 89
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=77.86 E-value=7.3 Score=38.61 Aligned_cols=58 Identities=16% Similarity=0.180 Sum_probs=47.2
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHH---H-HHHHHHHHHHHHHHHhCCCccCHhhHHHHHhc
Q 009716 9 IEVIAQSIGVYNLSSDVALALAPDVE---Y-RVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (528)
Q Consensus 9 V~~iAes~Gi~~Lsdeaa~~La~dve---y-rlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~ 67 (528)
++..++..|+ .++++++..|+.... . .+.++++.|..++...++..+|.+||..|++.
T Consensus 268 l~~~~~~~~~-~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~ 329 (368)
T 3uk6_A 268 LRIRCEEEDV-EMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSL 329 (368)
T ss_dssp HHHHHHHTTC-CBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHcCC-CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 3444556677 599999999999887 2 36678888888888889999999999999975
No 90
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=77.50 E-value=32 Score=39.55 Aligned_cols=57 Identities=5% Similarity=-0.035 Sum_probs=42.2
Q ss_pred CchHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhC
Q 009716 275 NHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALG 334 (528)
Q Consensus 275 ~hw~LRd~AA~lL~~I~~kf~~~y~~L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~aLG 334 (528)
+.|.+|..++.+|..+|..++. .+-+-+...+.+.+.++..+....-+|+.++.++.
T Consensus 425 d~~~~~~~~~~~L~~l~~~~~~---~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia 481 (1049)
T 3m1i_C 425 DTIQLYKSEREVLVYLTHLNVI---DTEEIMISKLARQIDGSEWSWHNINTLSWAIGSIS 481 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHH---HHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHccCHH---HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHh
Confidence 4689999999999999976653 34455666666665544566777889999999884
No 91
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=76.55 E-value=23 Score=36.77 Aligned_cols=153 Identities=12% Similarity=0.072 Sum_probs=83.5
Q ss_pred cccchhhHHHHHHHHhhhcCCHHHHHHHHHHHHHhhcCCCcccccchh-hhHHHHHHHHhccccCCCCCCCchHHHHHHH
Q 009716 206 HPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHIHIEPYLH-QMMPSVITCLVSKRLGNRFSDNHWDLRNFVA 284 (528)
Q Consensus 206 ~qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~Np~L~LepYLH-qLlPsvLTCll~k~l~~~~~~~hw~LRd~AA 284 (528)
..++|.++..+. -.+.......+..+..|..++.-.++..+. .++|.++.++- +.++.+|..|+
T Consensus 243 ~~~l~~L~~lL~------~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~---------~~~~~v~~~a~ 307 (528)
T 4b8j_A 243 RPALPALARLIH------SNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLL---------HPSPSVLIPAL 307 (528)
T ss_dssp TTHHHHHHHHTT------CCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTT---------CSCHHHHHHHH
T ss_pred HHHHHHHHHHHC------CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHc---------CCChhHHHHHH
Confidence 345666665542 135666667777777777765543333332 56777777752 23579999999
Q ss_pred HHHHHHHHHhCCCc-hhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhC--h-hhhhhhcc-cchHHHHHhhhhhhhh
Q 009716 285 DLIASICTRFGHVY-QNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALG--P-SVVHLLIL-PNLELYLKFLEPEMLL 359 (528)
Q Consensus 285 ~lL~~I~~kf~~~y-~~L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~aLG--~-~aVr~lil-P~L~~y~~~Le~~l~~ 359 (528)
.+|+.|+....... .-+...++..|.+.|.++. ......-|+..|..|. . +.+..++- .-++.+.+.|...
T Consensus 308 ~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~--- 383 (528)
T 4b8j_A 308 RTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNL-KKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTA--- 383 (528)
T ss_dssp HHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCC-CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHS---
T ss_pred HHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCC-cHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcC---
Confidence 99999986211100 1122345667777776542 4455566777777663 3 22322221 2233333333221
Q ss_pred HhhhhhhhHHHHHHHHHHHHHh
Q 009716 360 EKQKNEMKRHEAWRVYGALQCA 381 (528)
Q Consensus 360 ~~~~~~~~r~ea~~v~~all~a 381 (528)
+...|.+|..+.+-|...
T Consensus 384 ----~~~v~~~a~~aL~nl~~~ 401 (528)
T 4b8j_A 384 ----EFDIKKEAAWAISNATSG 401 (528)
T ss_dssp ----CHHHHHHHHHHHHHHHHH
T ss_pred ----CHHHHHHHHHHHHHHHcC
Confidence 334555666666655443
No 92
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=75.66 E-value=44 Score=29.83 Aligned_cols=50 Identities=24% Similarity=0.312 Sum_probs=30.3
Q ss_pred CCchHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhCh
Q 009716 274 DNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGP 335 (528)
Q Consensus 274 ~~hw~LRd~AA~lL~~I~~kf~~~y~~L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~ 335 (528)
+.+|.+|..|+..|+.+. . + ..+..|.+.+.|+ .....+.|+.+|..+|.
T Consensus 123 d~~~~vr~~a~~aL~~~~----~--~----~~~~~L~~~l~d~--~~~vr~~a~~aL~~~~~ 172 (211)
T 3ltm_A 123 DEDWFVRIAAAFALGEIG----D--E----RAVEPLIKALKDE--DGWVRQSAADALGEIGG 172 (211)
T ss_dssp CSSHHHHHHHHHHHHHHC----C--G----GGHHHHHHHTTCS--SHHHHHHHHHHHHHHCS
T ss_pred CCCHHHHHHHHHHHHHcC----C--H----HHHHHHHHHHcCC--CHHHHHHHHHHHHHhCc
Confidence 456777777777777662 1 1 2344455555443 34566777777777765
No 93
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=75.59 E-value=24 Score=39.70 Aligned_cols=84 Identities=13% Similarity=0.150 Sum_probs=54.1
Q ss_pred HHHHHHHHhhcCCCcccccchhhhHHHHHHHHhccccCCCCCCCchHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Q 009716 232 ALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLH 311 (528)
Q Consensus 232 ~llrmv~ALl~Np~L~LepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~~y~~L~~RI~~tL~k 311 (528)
.+-++.+-+-.|+ .|+..+++.++.++- . -.+|..|+..+..+|+.++.....--+.|+..|.+
T Consensus 512 ~l~~~~~~l~~~~-----~~l~~vl~~l~~~l~-----~------~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~ 575 (963)
T 2x19_B 512 TIGALSEWLADHP-----VMINSVLPLVLHALG-----N------PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQD 575 (963)
T ss_dssp HHHHTHHHHHHCH-----HHHTTTHHHHHHHTT-----C------GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhCH-----HHHHHHHHHHHHHhC-----C------chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3445555454443 577777787777751 1 27899999999999998776544445677777777
Q ss_pred HhcCCCC---CchhhhhHHHHHH
Q 009716 312 AFLDPTK---SLSQHYGAIQGLA 331 (528)
Q Consensus 312 ~llDp~k---~l~t~YGAI~GL~ 331 (528)
.+..+.- .....|.||..+.
T Consensus 576 ~l~~~~~~~~~~~~~~eai~~i~ 598 (963)
T 2x19_B 576 VLMKQIHKTSQCMWLMQALGFLL 598 (963)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHH
T ss_pred HhccCCCChHHHHHHHHHHHHHH
Confidence 7764332 2334466666654
No 94
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=75.30 E-value=45 Score=29.77 Aligned_cols=121 Identities=16% Similarity=0.113 Sum_probs=71.3
Q ss_pred HHHHHHhhcCCChHHHHHHHHHhhhcCCccccchhhHHHHHHHHhhhcCCHHHHHHHHHHHHHhhcCCCcccccchhhhH
Q 009716 177 DKIRELTVSRSNSTVFKQALLSLAMDSGLHPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHIHIEPYLHQMM 256 (528)
Q Consensus 177 ~kIt~a~l~~~~~~~r~~AL~sL~tD~gL~qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~Np~L~LepYLHqLl 256 (528)
..+.+.+ ...+...|..|+..|..-.. ...+|.++..+.+ .|...-...+ ++|-.-.. ...+
T Consensus 22 ~~L~~~L-~~~~~~vR~~A~~~L~~~~~-~~~~~~L~~~l~~------~~~~vr~~a~---~aL~~~~~-------~~~~ 83 (211)
T 3ltm_A 22 EMYIKNL-QDDSYYVRRAAAYALGKIGD-ERAVEPLIKALKD------EDAWVRRAAA---DALGQIGD-------ERAV 83 (211)
T ss_dssp HHHHHHT-TCSSHHHHHHHHHHHHHHCC-GGGHHHHHHHTTC------SCHHHHHHHH---HHHHHHCC-------GGGH
T ss_pred HHHHHHH-cCCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHcC------CCHHHHHHHH---HHHHhhCC-------HHHH
Confidence 4445544 44566677777777765332 3556666655432 1333222222 33322111 2456
Q ss_pred HHHHHHHhccccCCCCCCCchHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhChh
Q 009716 257 PSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPS 336 (528)
Q Consensus 257 PsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~~y~~L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~~ 336 (528)
|.++.++ .+.++.+|..|+..|+.+.. + .....|.+.+.| ........|+.+|..+|..
T Consensus 84 ~~L~~~l---------~~~~~~vr~~a~~aL~~~~~------~----~~~~~L~~~l~d--~~~~vr~~a~~aL~~~~~~ 142 (211)
T 3ltm_A 84 EPLIKAL---------KDEDGWVRQSAAVALGQIGD------E----RAVEPLIKALKD--EDWFVRIAAAFALGEIGDE 142 (211)
T ss_dssp HHHHHHT---------TCSSHHHHHHHHHHHHHHCC------G----GGHHHHHHHTTC--SSHHHHHHHHHHHHHHCCG
T ss_pred HHHHHHH---------cCCCHHHHHHHHHHHHHhCc------H----HHHHHHHHHHhC--CCHHHHHHHHHHHHHcCCH
Confidence 6666664 24568999999999987742 2 244556666654 4567788999999999864
No 95
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=75.09 E-value=4.6 Score=36.85 Aligned_cols=57 Identities=19% Similarity=0.158 Sum_probs=41.4
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhCCCccCHhhHHHHHh
Q 009716 8 TIEVIAQSIGVYNLSSDVALALAPDVEYRV---REIMQEAIKCMRHAHRTVLTANDVDSALN 66 (528)
Q Consensus 8 ~V~~iAes~Gi~~Lsdeaa~~La~dveyrl---reIiqeA~kfm~hskR~~Lt~~DI~~AL~ 66 (528)
-++..++..|+ .+++++++.|++...-.+ ..+++.+..++...+ +++|.+||+.+++
T Consensus 182 ~l~~~~~~~~~-~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~a~~~~-~~It~~~v~~~l~ 241 (242)
T 3bos_A 182 ALQRRAAMRGL-QLPEDVGRFLLNRMARDLRTLFDVLDRLDKASMVHQ-RKLTIPFVKEMLR 241 (242)
T ss_dssp HHHHHHHHTTC-CCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHT-CCCCHHHHHHHHT
T ss_pred HHHHHHHHcCC-CCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhC-CCCcHHHHHHHhh
Confidence 34555666788 699999999999877444 455555666654444 4699999999986
No 96
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=74.66 E-value=2.7 Score=41.89 Aligned_cols=60 Identities=17% Similarity=0.061 Sum_probs=52.9
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhc
Q 009716 7 ETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (528)
Q Consensus 7 e~V~~iAes~Gi~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~ 67 (528)
+.|+.++++.|+ .++++++..|++-++..++.+.++--|++-.+..+++|.+||+..+-.
T Consensus 149 ~~l~~~~~~~g~-~i~~~a~~~l~~~~~gdl~~~~~elekl~l~~~~~~It~e~V~~~~~~ 208 (343)
T 1jr3_D 149 RWVAARAKQLNL-ELDDAANQVLCYCYEGNLLALAQALERLSLLWPDGKLTLPRVEQAVND 208 (343)
T ss_dssp HHHHHHHHHTTC-EECHHHHHHHHHSSTTCHHHHHHHHHHHHHHCTTCEECHHHHHHHHHH
T ss_pred HHHHHHHHHcCC-CCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhh
Confidence 567799999999 699999999999999999999999999888766678999999988754
No 97
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=73.19 E-value=6.1 Score=35.12 Aligned_cols=56 Identities=16% Similarity=0.099 Sum_probs=44.5
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHh
Q 009716 8 TIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALN 66 (528)
Q Consensus 8 ~V~~iAes~Gi~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~ 66 (528)
.++..++..|+ .++++++..|++...-.++++++...+.+..+ +++|.+||+.|+.
T Consensus 169 ~l~~~~~~~~~-~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~~--~~I~~~~v~~~~~ 224 (226)
T 2chg_A 169 RLLEICEKEGV-KITEDGLEALIYISGGDFRKAINALQGAAAIG--EVVDADTIYQITA 224 (226)
T ss_dssp HHHHHHHHHTC-CBCHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--SCBCHHHHHHHHH
T ss_pred HHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC--ceecHHHHHHHhc
Confidence 34455566688 49999999999888877888887777777666 6899999999985
No 98
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=72.83 E-value=33 Score=35.57 Aligned_cols=112 Identities=8% Similarity=0.010 Sum_probs=67.9
Q ss_pred ccchhhHHHHHHHHhhhcCCHHHHHHHHHHHHHhhcCCCcccccc-hhhhHHHHHHHHhccccCCCCCCCchHHHHHHHH
Q 009716 207 PLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHIHIEPY-LHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVAD 285 (528)
Q Consensus 207 qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~Np~L~LepY-LHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~ 285 (528)
..+|.|+.++.+ .+.......+..+..|..+..-.-+.. -+..+|+++.++- ...++.+|..|+.
T Consensus 160 g~i~~L~~lL~~------~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~--------~~~~~~v~~~a~~ 225 (528)
T 4b8j_A 160 GAVPIFVKLLGS------SSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLN--------EHTKLSMLRNATW 225 (528)
T ss_dssp THHHHHHHHTTC------SCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCC--------TTCCHHHHHHHHH
T ss_pred CcHHHHHHHhcC------CCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHh--------cCCCHHHHHHHHH
Confidence 466777766643 244444455555555554322111111 1246777776641 1346899999999
Q ss_pred HHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhC
Q 009716 286 LIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALG 334 (528)
Q Consensus 286 lL~~I~~kf~~~y~~L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~aLG 334 (528)
+|+.+|......-......++..|.+.+.++ ......-|+.+|..|.
T Consensus 226 ~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~--~~~v~~~a~~aL~~l~ 272 (528)
T 4b8j_A 226 TLSNFCRGKPQPSFEQTRPALPALARLIHSN--DEEVLTDACWALSYLS 272 (528)
T ss_dssp HHHHHHCSSSCCCHHHHTTHHHHHHHHTTCC--CHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCCCcHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHH
Confidence 9999998654333344556777888887654 3455667777887774
No 99
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=72.18 E-value=38 Score=36.64 Aligned_cols=139 Identities=11% Similarity=0.108 Sum_probs=81.2
Q ss_pred HHHHHHHHhhcCCChHHHHHHHH---HhhhcCCccccchhhHHHHHHHHhhhcCCHHHHHHHHHHHHHhhcCCCcccccc
Q 009716 175 YFDKIRELTVSRSNSTVFKQALL---SLAMDSGLHPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHIHIEPY 251 (528)
Q Consensus 175 Yf~kIt~a~l~~~~~~~r~~AL~---sL~tD~gL~qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~Np~L~LepY 251 (528)
|+..|.. |+..++...|+.||+ .|.+...+..+++.|..|+.+ .+...-..+.+.+..+..+= .+-
T Consensus 351 ~~~~i~~-~l~d~d~~Ir~~alelL~~l~~~~nv~~iv~eL~~~l~~------~d~e~r~~~v~~I~~la~k~----~~~ 419 (618)
T 1w63_A 351 HRSTIVD-CLKDLDVSIKRRAMELSFALVNGNNIRGMMKELLYFLDS------CEPEFKADCASGIFLAAEKY----APS 419 (618)
T ss_dssp GHHHHHH-GGGSSCHHHHHHHHHHHHHHCCSSSTHHHHHHHHHHHHH------CCHHHHHHHHHHHHHHHHSS----CCC
T ss_pred HHHHHHH-HccCCChhHHHHHHHHHHHHcccccHHHHHHHHHHHHHh------CCHHHHHHHHHHHHHHHHHh----Ccc
Confidence 4445554 445566677777765 456677788899999888875 23444444555555555531 123
Q ss_pred hhhhHHHHHHHHhccccCCCCCCCchHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHH
Q 009716 252 LHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLA 331 (528)
Q Consensus 252 LHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~~y~~L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~ 331 (528)
.+..++.++.++-.. +. ..++.+...+..|+++ ++.++..++..+.+.|.++...-...-.+++.|.
T Consensus 420 ~~~~v~~ll~lL~~~--~~-------~v~~~~~~~l~~ii~~----~p~l~~~~v~~L~~~l~~~~~~~~~~~~~~wilG 486 (618)
T 1w63_A 420 KRWHIDTIMRVLTTA--GS-------YVRDDAVPNLIQLITN----SVEMHAYTVQRLYKAILGDYSQQPLVQVAAWCIG 486 (618)
T ss_dssp HHHHHHHHHHHHHHT--GG-------GSCSSHHHHHHHHHHH----SCSTHHHHHHHHHHHHHHCCSCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc--cc-------hhHHHHHHHHHHHHhc----ChhHHHHHHHHHHHHHhcccccHHHHHHHHHHHh
Confidence 344455555444221 11 1233355566677776 4568888888888888754322233336777777
Q ss_pred hhChhh
Q 009716 332 ALGPSV 337 (528)
Q Consensus 332 aLG~~a 337 (528)
++|...
T Consensus 487 Ey~~~i 492 (618)
T 1w63_A 487 EYGDLL 492 (618)
T ss_dssp HHHHHH
T ss_pred hhHHHh
Confidence 777543
No 100
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=71.56 E-value=32 Score=39.53 Aligned_cols=195 Identities=9% Similarity=0.034 Sum_probs=108.1
Q ss_pred HHHHHhhhcCCccccchhhHHHHHHHHhhhcCCHHHHHHHHHHHHHhhcCCCcccc-cchhhhHHHHHHHHhccccCCCC
Q 009716 194 QALLSLAMDSGLHPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHIHIE-PYLHQMMPSVITCLVSKRLGNRF 272 (528)
Q Consensus 194 ~AL~sL~tD~gL~qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~Np~L~Le-pYLHqLlPsvLTCll~k~l~~~~ 272 (528)
++|..|..-.+ ..+++.+..++.+.+...-.++......+.++.|+...=.-..+ +|+.++++.+++. +...
T Consensus 435 ~~L~~l~~~~~-~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l------~~~~ 507 (1049)
T 3m1i_C 435 EVLVYLTHLNV-IDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDL------TVKK 507 (1049)
T ss_dssp HHHHHHHHHCH-HHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHH------TTSS
T ss_pred HHHHHHHccCH-HHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHH------Hhhh
Confidence 35555542222 24555555555554433234677777777777788754221212 4566667666552 2111
Q ss_pred --CCCchHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhChhhhhhhc-------c
Q 009716 273 --SDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLI-------L 343 (528)
Q Consensus 273 --~~~hw~LRd~AA~lL~~I~~kf~~~y~~L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~~aVr~li-------l 343 (528)
.++|-.+|..+..++++.++-+.. .+..-+.++..+...+.|++ ...+.-|..+|..|..+.-..++ -
T Consensus 508 ~~~~~~~~v~~~~~~~lgry~~~~~~-~~~~l~~vl~~ll~~l~~~~--~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~ 584 (1049)
T 3m1i_C 508 RGKDNKAVVASDIMYVVGQYPRFLKA-HWNFLRTVILKLFEFMHETH--EGVQDMACDTFIKIVQKCKYHFVIQQPRESE 584 (1049)
T ss_dssp CSHHHHHHHHHHHHHHHHHCHHHHHH-CHHHHHHHHHHHHHHTTSSC--HHHHHHHHHHHHHHHHHHTHHHHSCCTTCSS
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHHHHHHHHHhhcccCCCCC
Confidence 235666676788888888764443 35666778888888887653 44455667777777665433322 2
Q ss_pred cchHHHHHhhhhhhhhHhhhhhhhHHHHHHHHHHHHHhhhhhhh-h-ccchh-ccCCCcchhhc
Q 009716 344 PNLELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQCAAGLCVY-D-RLKTV-LLRPPKQSRWE 404 (528)
Q Consensus 344 P~L~~y~~~Le~~l~~~~~~~~~~r~ea~~v~~all~a~g~~~~-~-~~~~~-~~~~~~~~~~~ 404 (528)
|+++.+...+...+.. ....+-..+|.|+...+...-. + ....+ -+.+|....|.
T Consensus 585 p~~~~il~~l~~~~~~------~~~~~~~~~~eai~~ii~~~~~~~~~~~~~~~l~~~~~~~~~ 642 (1049)
T 3m1i_C 585 PFIQTIIRDIQKTTAD------LQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWD 642 (1049)
T ss_dssp CHHHHHHHTHHHHHTT------SCHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHTHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHh------CCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999998888766542 1122334555554444433221 1 11212 33456666675
No 101
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=71.22 E-value=54 Score=35.67 Aligned_cols=78 Identities=13% Similarity=0.084 Sum_probs=57.2
Q ss_pred ccchhhhHHHHHHHHhccccCCCCCCCchHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHH
Q 009716 249 EPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQ 328 (528)
Q Consensus 249 epYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~~y~~L~~RI~~tL~k~llDp~k~l~t~YGAI~ 328 (528)
..++..++|.|..|+.+ .+.+..+|..|+-.+.+|++.+....+. +.+...+.+.|.| +.....++|+.
T Consensus 141 ~e~~~~l~~~v~~~l~~-------~d~~~~VRK~A~~al~kl~~~~p~~~~~--~~~~~~l~~lL~d--~d~~V~~~a~~ 209 (621)
T 2vgl_A 141 REMAEAFAGEIPKILVA-------GDTMDSVKQSAALCLLRLYRTSPDLVPM--GDWTSRVVHLLND--QHLGVVTAATS 209 (621)
T ss_dssp HHHHHHHTTHHHHHHHC-------SSSCHHHHHHHHHHHHHHHHHCGGGCCC--CSCHHHHHHHTTC--SCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhC-------CCCCHHHHHHHHHHHHHHHHhChhhcCc--hhHHHHHHHHhCC--CCccHHHHHHH
Confidence 44677899999999854 2557799999999999999976554441 1556666666654 45678899999
Q ss_pred HHHhhChhh
Q 009716 329 GLAALGPSV 337 (528)
Q Consensus 329 GL~aLG~~a 337 (528)
.|..+..+.
T Consensus 210 ~l~~i~~~~ 218 (621)
T 2vgl_A 210 LITTLAQKN 218 (621)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhC
Confidence 888885543
No 102
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=69.27 E-value=60 Score=28.65 Aligned_cols=52 Identities=23% Similarity=0.277 Sum_probs=39.6
Q ss_pred CCchHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhChhh
Q 009716 274 DNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSV 337 (528)
Q Consensus 274 ~~hw~LRd~AA~lL~~I~~kf~~~y~~L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~~a 337 (528)
+.+|.+|..|+..|+.+.. +..+..|.+.+.|+ .....+.|+.+|..+|...
T Consensus 118 d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~--~~~vr~~A~~aL~~~~~~~ 169 (201)
T 3ltj_A 118 DEDWFVRIAAAFALGEIGD----------ERAVEPLIKALKDE--DGWVRQSAADALGEIGGER 169 (201)
T ss_dssp CSSHHHHHHHHHHHHHHTC----------GGGHHHHHHHTTCS--SHHHHHHHHHHHHHHCSHH
T ss_pred CCCHHHHHHHHHHHHHhCC----------HHHHHHHHHHHcCC--CHHHHHHHHHHHHHhCchh
Confidence 5679999999999998742 23455666777664 5678899999999998643
No 103
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=68.03 E-value=3.4 Score=48.22 Aligned_cols=121 Identities=13% Similarity=0.116 Sum_probs=70.5
Q ss_pred CHHHHHHHHHHHHHhhcCCCcccccchhhhHHHHHHHHhccccCCCCCCCc-hHHHHHHHHHHHHHHHHhCCCchhHHHH
Q 009716 226 NFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNH-WDLRNFVADLIASICTRFGHVYQNLQSR 304 (528)
Q Consensus 226 nl~~L~~llrmv~ALl~Np~L~LepYLHqLlPsvLTCll~k~l~~~~~~~h-w~LRd~AA~lL~~I~~kf~~~y~~L~~R 304 (528)
++ .-..+|.+++.+.-...+.+..--. ..|+.+++. -..|++ -++|+.||.+|+.|++ ++....... .
T Consensus 815 sW-~R~~~L~~lq~~~f~n~f~l~~~~~---~~i~~~v~~-----~L~D~q~~EVRe~Aa~tLsgll~-c~~~~~~~~-~ 883 (997)
T 1vsy_5 815 SN-QTKLQLAFIQHFLSAELLQLTEEEK---NKILEFVVS-----NLYNEQFVEVRVRAASILSDIVH-NWKEEQPLL-S 883 (997)
T ss_dssp SS-SHHHHHHHHHHHHHHHTTTSCTTHH---HHTHHHHTT-----TTTCSSCHHHHHHHHHHHHHHHH-SCCSHHHHH-H
T ss_pred cH-HHHHHHHHHHHHHHHHHHHcCHHHH---HHHHHHHHH-----HhcCCccHHHHHHHHHHHHHHHH-cCCchhhHH-H
Confidence 55 5666777788877776666665433 455555543 125778 8999999999999985 221112222 4
Q ss_pred HHHHHHHHhcC---C-------CCCchhhhhHHHHHHhhChhhhhhh-cccchHHHHHhhhhhh
Q 009716 305 VTRTLLHAFLD---P-------TKSLSQHYGAIQGLAALGPSVVHLL-ILPNLELYLKFLEPEM 357 (528)
Q Consensus 305 I~~tL~k~llD---p-------~k~l~t~YGAI~GL~aLG~~aVr~l-ilP~L~~y~~~Le~~l 357 (528)
++..|.+.+.. . .+......|||.||+|+=.-.=-.+ +=|.++..+..|-.+.
T Consensus 884 li~~f~~~~~~~~~~~~~~~~~~~~~~~rH~aVLgL~AlV~a~Py~vP~P~w~P~~l~~La~~~ 947 (997)
T 1vsy_5 884 LIERFAKGLDVNKYTSKERQKLSKTDIKIHGNVLGLGAIISAFPYVFPLPPWIPKNLSNLSSWA 947 (997)
T ss_dssp HHHHHTTSSTTTSSCHHHHHHHHHHCHHHHHHHHHHHHHHTTCSCCSSCCTHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHHHhhCCCCCCCCcccHHHHHHHHHHh
Confidence 55566555432 0 1223678899999999621111110 1235555555555444
No 104
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=68.02 E-value=79 Score=29.51 Aligned_cols=132 Identities=14% Similarity=0.061 Sum_probs=73.5
Q ss_pred HHHHHhhcCCChHHHHHHHHHhhhcCCccccchhhHHHHHHHHhhhcCCHHHHHHHHHHHHHhhcCCCcccccchhhhHH
Q 009716 178 KIRELTVSRSNSTVFKQALLSLAMDSGLHPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHIHIEPYLHQMMP 257 (528)
Q Consensus 178 kIt~a~l~~~~~~~r~~AL~sL~tD~gL~qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~Np~L~LepYLHqLlP 257 (528)
.+.+.+ ..++...|..|+..|..-.+ ...+|.++..+.+ .+...-. ..+++|-.=.. -...+..+++
T Consensus 27 ~L~~~L-~~~~~~vr~~A~~~L~~~~~-~~~~~~L~~~l~d------~~~~vR~---~A~~aL~~l~~--~~~~~~~l~~ 93 (280)
T 1oyz_A 27 ELFRLL-DDHNSLKRISSARVLQLRGG-QDAVRLAIEFCSD------KNYIRRD---IGAFILGQIKI--CKKCEDNVFN 93 (280)
T ss_dssp HHHHHT-TCSSHHHHHHHHHHHHHHCC-HHHHHHHHHHHTC------SSHHHHH---HHHHHHHHSCC--CTTTHHHHHH
T ss_pred HHHHHH-HcCCHHHHHHHHHHHHccCC-chHHHHHHHHHcC------CCHHHHH---HHHHHHHHhcc--ccccchHHHH
Confidence 344443 45566677777777765432 2345555443321 1222111 22233321110 1223334555
Q ss_pred HHHHHHhccccCCCCCCCchHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhChh
Q 009716 258 SVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPS 336 (528)
Q Consensus 258 svLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~~y~~L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~~ 336 (528)
.+...++ .+.++.+|..|+..|+.++.... ...+.++..|.+.+.|+ .....+.|+.+|..+|..
T Consensus 94 ~L~~~~~--------~d~~~~vr~~a~~aL~~l~~~~~----~~~~~~~~~L~~~l~d~--~~~vR~~a~~aL~~~~~~ 158 (280)
T 1oyz_A 94 ILNNMAL--------NDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDK--STNVRRATAFAISVINDK 158 (280)
T ss_dssp HHHHHHH--------HCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCS--CHHHHHHHHHHHHTC---
T ss_pred HHHHHHh--------cCCCHHHHHHHHHHHHHHhccCC----cccHHHHHHHHHHhhCC--CHHHHHHHHHHHHhcCCH
Confidence 4433222 25578999999999999987542 23457778888888764 467789999999999874
No 105
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=64.35 E-value=6.6 Score=30.93 Aligned_cols=42 Identities=19% Similarity=0.139 Sum_probs=35.5
Q ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhc
Q 009716 26 ALALAPDVE----YRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (528)
Q Consensus 26 a~~La~dve----yrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~ 67 (528)
...||+..+ -.|..++++|...+.+..+..++.+|+..|++.
T Consensus 27 l~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~ 72 (78)
T 3kw6_A 27 LRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAK 72 (78)
T ss_dssp HHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 455666555 458999999999999999999999999999975
No 106
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=63.67 E-value=10 Score=33.87 Aligned_cols=56 Identities=14% Similarity=0.159 Sum_probs=40.8
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHh
Q 009716 9 IEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALN 66 (528)
Q Consensus 9 V~~iAes~Gi~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~ 66 (528)
++..++..|+ .++++++..|++...-..+.+.+.+.+.+..++ .++|.+||+.|+.
T Consensus 194 l~~~~~~~~~-~~~~~~~~~l~~~~~G~~~~~~~~~~~~~~~~~-~~i~~~~v~~~~~ 249 (250)
T 1njg_A 194 LEHILNEEHI-AHEPRALQLLARAAEGSLRDALSLTDQAIASGD-GQVSTQAVSAMLG 249 (250)
T ss_dssp HHHHHHHTTC-CBCHHHHHHHHHHHTTCHHHHHHHHHHHHTTTT-SSBCHHHHHHHSC
T ss_pred HHHHHHhcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHHhccC-ceecHHHHHHHhC
Confidence 3444556677 689999999998887666666666555555544 4899999999874
No 107
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=63.19 E-value=16 Score=42.65 Aligned_cols=64 Identities=19% Similarity=0.325 Sum_probs=55.8
Q ss_pred CChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhc
Q 009716 4 VPKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (528)
Q Consensus 4 ~~~e~V~~iAes~Gi~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~ 67 (528)
+|-.-|.+..+..-..+++..|+-.||.-+||-.-||++-|...++..|++++++.||..|++.
T Consensus 105 ~pv~~~~~~l~~~~~~r~~~~~~~y~~avleyl~~~~l~la~~~~~~~~~~~i~p~~~~~ai~~ 168 (1049)
T 3ksy_A 105 LPVEKIHPLLKEVLGYKIDHQVSVYIVAVLEYISADILKLVGNYVRNIRHYEITKQDIKVAMCA 168 (1049)
T ss_dssp SCHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCHHHHHHHHHH
T ss_pred ccHHHHHHHhhcccccccCCCCcchhHHHHHHHHHHHHHHHHHHHHHcCCceecCccccccccC
Confidence 5666666666444456899999999999999999999999999999999999999999999965
No 108
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=63.14 E-value=16 Score=36.42 Aligned_cols=63 Identities=11% Similarity=0.131 Sum_probs=49.5
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhccCCC
Q 009716 8 TIEVIAQSIGVYNLSSDVALALAPDVE---YRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNVE 71 (528)
Q Consensus 8 ~V~~iAes~Gi~~Lsdeaa~~La~dve---yrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~~nve 71 (528)
-++..++..|+ .++++++..||...+ -.+..+++.+..++.-.++.++|.+++..|+...+++
T Consensus 188 iL~~~~~~~~~-~~~~~~~~~ia~~~~G~~R~a~~ll~~~~~~a~~~~~~~It~~~v~~al~~~~~~ 253 (334)
T 1in4_A 188 IIKRAASLMDV-EIEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVVKADRINTDIVLKTMEVLNID 253 (334)
T ss_dssp HHHHHHHHTTC-CBCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHHTCC
T ss_pred HHHHHHHHcCC-CcCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHhCCC
Confidence 45666777888 599999999998543 2355677778888887788899999999999987654
No 109
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=62.16 E-value=1.2e+02 Score=29.60 Aligned_cols=132 Identities=17% Similarity=0.200 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHhh-cCCCcccccchhhhHHHHHHHHhccccCCCCCCCchHHHHHHHHHHHHHHHHhCCCchhHHHHHH
Q 009716 228 SLLFALMRVARSLL-RNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVT 306 (528)
Q Consensus 228 ~~L~~llrmv~ALl-~Np~L~LepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~~y~~L~~RI~ 306 (528)
..+..|-++-+=++ .||. ++.++++.++... + +..-++|.+-+.++..+|++ .+.+-++++
T Consensus 31 ~kl~~L~qa~el~~~~dp~-----ll~~~l~~il~~~-~--------~~~~~vrk~~~~Fi~e~~~~----k~~l~~~~l 92 (257)
T 3gs3_A 31 TKCELLAKVQETVLGSCAE-----LAEEFLESVLSLA-H--------DSNMEVRKQVVAFVEQVCKV----KVELLPHVI 92 (257)
T ss_dssp HHHHHHHHHHHHHTTTTGG-----GHHHHHHHHHGGG-G--------CSCHHHHHHHHHHHHHHHHH----CGGGHHHHH
T ss_pred HHHHHHHHHHHHHHccCHh-----HHHHHHHHHHHhc-c--------CChHHHHHHHHHHHHHHHHH----HHHHHHHHH
Confidence 44555555555233 3443 3445555555432 1 23468999999999999977 467999999
Q ss_pred HHHHHHhcCCCCCchhhhhHHHHHHhhChhhhhhhcc-cc----hHHHHHhhhhh---hh-hHhhhhhhhHHHHHHHHHH
Q 009716 307 RTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLIL-PN----LELYLKFLEPE---ML-LEKQKNEMKRHEAWRVYGA 377 (528)
Q Consensus 307 ~tL~k~llDp~k~l~t~YGAI~GL~aLG~~aVr~lil-P~----L~~y~~~Le~~---l~-~~~~~~~~~r~ea~~v~~a 377 (528)
.+|...+.| ......=.+|.+...+=+.+.+.++- |+ ....|+.+..- +. .-...|..+|..+.|+...
T Consensus 93 ~~L~~Ll~d--~d~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~ 170 (257)
T 3gs3_A 93 NVVSMLLRD--NSAQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEG 170 (257)
T ss_dssp HHHHHHTTC--SCHHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHcC--CCHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHH
Confidence 999988875 34555557888888777777776542 33 35566554322 11 1122455566666666554
Q ss_pred HH
Q 009716 378 LQ 379 (528)
Q Consensus 378 ll 379 (528)
++
T Consensus 171 vI 172 (257)
T 3gs3_A 171 VV 172 (257)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 110
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=61.40 E-value=18 Score=32.26 Aligned_cols=111 Identities=11% Similarity=0.080 Sum_probs=63.8
Q ss_pred ccchhhHHHHHHHHhhhcCCHHHHHHHHHHHHHhhcCCCcccccch-hhhHHHHHHHHhccccCCCCCCCchHHHHHHHH
Q 009716 207 PLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHIHIEPYL-HQMMPSVITCLVSKRLGNRFSDNHWDLRNFVAD 285 (528)
Q Consensus 207 qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~Np~L~LepYL-HqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~ 285 (528)
..+|.++.++.+ .+..........+..|..+..-..+..+ +..+|.++.++- +.+..+|..|+.
T Consensus 96 g~i~~L~~lL~~------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~---------~~~~~v~~~a~~ 160 (210)
T 4db6_A 96 GALPALVQLLSS------PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS---------SPNEQILQEALW 160 (210)
T ss_dssp TCHHHHHHHTTC------SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTT---------CSCHHHHHHHHH
T ss_pred CCHHHHHHHHcC------CcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHc---------CCCHHHHHHHHH
Confidence 356777766533 2455555566666666654332222222 457888877752 235689999999
Q ss_pred HHHHHHHHhCCCc-hhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhC
Q 009716 286 LIASICTRFGHVY-QNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALG 334 (528)
Q Consensus 286 lL~~I~~kf~~~y-~~L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~aLG 334 (528)
.|..+|......- .-....++..|.+.+.+ .+.....-|...|..|.
T Consensus 161 aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~--~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 161 ALSNIASGGNEQKQAVKEAGALEKLEQLQSH--ENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp HHHHHHTSCHHHHHHHHHTTHHHHHHHGGGC--SCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCcHHHHHHHHCCCHHHHHHHHhC--CCHHHHHHHHHHHHHHh
Confidence 9999996311100 01122345667777664 34455666776666654
No 111
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=60.11 E-value=8.5 Score=30.71 Aligned_cols=34 Identities=26% Similarity=0.250 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhcc
Q 009716 35 YRVREIMQEAIKCMRHAHRTVLTANDVDSALNLR 68 (528)
Q Consensus 35 yrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~~ 68 (528)
-.|..++++|...+.+..+..++.+|+..|++..
T Consensus 35 ADi~~l~~eAa~~ai~~~~~~i~~~df~~Al~~v 68 (82)
T 2dzn_B 35 AVIAAIMQEAGLRAVRKNRYVILQSDLEEAYATQ 68 (82)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHH
Confidence 4578899999999999999999999999999764
No 112
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=52.94 E-value=15 Score=29.84 Aligned_cols=44 Identities=20% Similarity=0.067 Sum_probs=36.5
Q ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhccC
Q 009716 26 ALALAPDVE----YRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRN 69 (528)
Q Consensus 26 a~~La~dve----yrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~~n 69 (528)
...||+..+ -.|+.++++|...+.+..+..++.+|+..|++..-
T Consensus 25 l~~lA~~t~G~SGADl~~l~~eAa~~a~r~~~~~i~~~df~~Al~~v~ 72 (88)
T 3vlf_B 25 WELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKVI 72 (88)
T ss_dssp HHHHHHTCSSCCHHHHHHHHHHHHHHHHHHSCSSBCHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHh
Confidence 455666555 46999999999999999999999999999998643
No 113
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=52.63 E-value=13 Score=30.18 Aligned_cols=41 Identities=20% Similarity=0.152 Sum_probs=33.0
Q ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhc
Q 009716 27 LALAPDVE----YRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (528)
Q Consensus 27 ~~La~dve----yrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~ 67 (528)
..||+..+ -.|..++++|...+.+..+..++.+|+..|++.
T Consensus 36 ~~LA~~T~G~SGADL~~l~~eAa~~alr~~~~~I~~~df~~Al~~ 80 (86)
T 2krk_A 36 RKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAK 80 (86)
T ss_dssp HHHHHTCSSCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 34554443 468889999999999888999999999999975
No 114
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=51.20 E-value=3.6e+02 Score=31.68 Aligned_cols=89 Identities=13% Similarity=0.145 Sum_probs=49.8
Q ss_pred hcCCccccchhhHHHHHHHHhhhcCCHHHHHHHHHHHHHhhcCCCcccccchhhhHHHHHHHH---hcc-ccCCCCC---
Q 009716 201 MDSGLHPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCL---VSK-RLGNRFS--- 273 (528)
Q Consensus 201 tD~gL~qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~Np~L~LepYLHqLlPsvLTCl---l~k-~l~~~~~--- 273 (528)
..+.++++++++..|... .+...-...+.+-.+++++..+...+.+..+++.++.++ +.| +......
T Consensus 345 ~~~~l~~~l~~lL~~t~~------~~~~vs~~~l~fW~~ll~~~~~~~~~~~~~~l~~Ll~vl~~~l~k~~yp~~~~~~~ 418 (1204)
T 3a6p_A 345 TPSNFGKYLESFLAFTTH------PSQFLRSSTQMTWGALFRHEILSRDPLLLAIIPKYLRASMTNLVKMGFPSKTDSPS 418 (1204)
T ss_dssp CCTTHHHHHHHHHHHHTS------SCHHHHHHHHHHHHHHHSCTTTTTCHHHHHHHHHHHHHHHHHHSCCCCSSCCSSTH
T ss_pred ChhHHHHHHHHHHHHHhC------ccHHhHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHhcCccccCCcc
Confidence 344556666666655532 244444444555556777765433333444455554444 333 1211000
Q ss_pred ---------------CCchHHHHHHHHHHHHHHHHhC
Q 009716 274 ---------------DNHWDLRNFVADLIASICTRFG 295 (528)
Q Consensus 274 ---------------~~hw~LRd~AA~lL~~I~~kf~ 295 (528)
..-|.+|...+.++..||..+.
T Consensus 419 ~~~~~~D~d~~~E~~~~f~~~Rk~~~d~l~~i~~v~p 455 (1204)
T 3a6p_A 419 CEYSRFDFDSDEDFNAFFNSSRAQQGEVMRLACRLDP 455 (1204)
T ss_dssp HHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred hhhhhcccCCcHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 1247899999999999998764
No 115
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=50.75 E-value=1.2e+02 Score=32.68 Aligned_cols=259 Identities=18% Similarity=0.194 Sum_probs=0.0
Q ss_pred ccCCccccCcHHHHHHHHHHHHHhhcCCChHHHHHHHHHh------hhcCCccccchhhHHHHHHHHhhhcCC---HHHH
Q 009716 160 IRLPVKHVLSKELQLYFDKIRELTVSRSNSTVFKQALLSL------AMDSGLHPLVPYFTYFISEEVTRSLKN---FSLL 230 (528)
Q Consensus 160 iK~~vkh~LSkElQ~Yf~kIt~a~l~~~~~~~r~~AL~sL------~tD~gL~qLLPYfv~FI~e~V~~nl~n---l~~L 230 (528)
+++..+.++++|.+.|+...+.-++..-....+.-.+.-| .|-+|.|+|++++....--.-.-+..| +..+
T Consensus 162 l~~l~~~~l~~E~E~~i~~~ikK~L~DVT~~EF~L~m~lL~~lkl~~t~~g~qeLv~ii~eQa~L~~~f~~sD~e~vdRl 241 (507)
T 3u0r_A 162 LKTLPDEVLTKEVEELILTESKKVLEDVTGEEFVLFMKILSGLKSLQTVSGRQQLVELVAEQADLEQTFNPSDPDCVDRL 241 (507)
T ss_dssp GGGSCTTTSCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHTSGGGSSHHHHHHHHHHHHHHHTTTSCCCSSCHHHHHHH
T ss_pred HhhcchhhccHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhcccccCchHHHHHHHHHHHHHhccCCCCCcCHHHHHHH
Q ss_pred HHHHHHHHHhhcCCCc---ccccchhhhHHHHHHHHhccccCCCCCCCchHHHHHHHHHHHHHHHHhC--CCchhHHHHH
Q 009716 231 FALMRVARSLLRNPHI---HIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFG--HVYQNLQSRV 305 (528)
Q Consensus 231 ~~llrmv~ALl~Np~L---~LepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~--~~y~~L~~RI 305 (528)
+..++++--+.+...= +++.|..+++| .-..+......+.|.||=. ++++.++.-.| ..-..+-+-|
T Consensus 242 I~C~~~ALP~FS~~v~StkFv~y~~~kIlP------~l~~L~e~~~~~~~kL~LL--K~lAE~s~~~~~~e~a~~~l~~i 313 (507)
T 3u0r_A 242 LQCTRQAVPLFSKNVHSTRFVTYFCEQVLP------NLGTLTTPVEGLDIQLEVL--KLLAEMSSFCGDMEKLETNLRKL 313 (507)
T ss_dssp HHHHHHHGGGCBTTBCCHHHHHHHHHHTGG------GTTCCCCC--CCCHHHHHH--HHHHHHHTTCCCCTTHHHHHHHH
T ss_pred HHHHHHHHHHhccCCChHHHHHHHHHhhcc------chhhccccccchHHHHHHH--HHHHHHccCCCccchHHHHHHHH
Q ss_pred HHHHHHHhcCCCC---------------CchhhhhHHHHHHhhChhhhhhhcc-----------cchHHHHHhhhhhhhh
Q 009716 306 TRTLLHAFLDPTK---------------SLSQHYGAIQGLAALGPSVVHLLIL-----------PNLELYLKFLEPEMLL 359 (528)
Q Consensus 306 ~~tL~k~llDp~k---------------~l~t~YGAI~GL~aLG~~aVr~lil-----------P~L~~y~~~Le~~l~~ 359 (528)
...|++.+=-|.. .++-.---+..++.||.++-..+.= .+|-.+...++..+..
T Consensus 314 y~~L~~ymP~~p~~~~~~~~~~~~~p~l~fS~vECLLy~fH~L~~k~P~~l~e~~~~~~lkdfr~RLqy~ar~~q~yikk 393 (507)
T 3u0r_A 314 FDKLLEYMPLPPEEAENGENAGNEEPKLQFSYVECLLYSFHQLGRKLPDFLTAKLNAEKLKDFKIRLQYFARGLQVYIRQ 393 (507)
T ss_dssp HHHHHTTSCCCC--------------CCCHHHHHHHHHHHHHHHTTCTHHHHCC--CCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCcccccccccccccCcccchhHHHHHHHHHHHHhhhChhhhcccccHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhhhhhhhHHHHHHHHHHHHHhhhhhhhhccchh----ccCCCcchh-----hccccc---CccccccccccCCCCccc
Q 009716 360 EKQKNEMKRHEAWRVYGALQCAAGLCVYDRLKTV----LLRPPKQSR-----WESNRK---GKRKASMDNLMLQPPVKK 426 (528)
Q Consensus 360 ~~~~~~~~r~ea~~v~~all~a~g~~~~~~~~~~----~~~~~~~~~-----~~~~~~---~~~~~~~~~~~~~~~~~~ 426 (528)
-++.-..+..++.+--..=...++.-..+-+-.+ +-.||+-.. |+...| +||++...+-..-++-|.
T Consensus 394 L~~~~~~K~~~~~kteenk~kv~alkt~~NI~~likdlfh~pPsFk~~v~lSWk~~~~~~~~kr~~~~~~~~~~~~~~~ 472 (507)
T 3u0r_A 394 LRLALQGKTGEALKTEENKIKVVALKITNNINVLIKDLFHIPPSYKSTVTLSWKPVQKVEIGQKRASEDTTSGSPPKKS 472 (507)
T ss_dssp HHHHHTTCCTTGGGSHHHHHHHHHHHHHHHHHHHHHHCC--CCCCCCCCCCTTSCC-----------------------
T ss_pred HHHHhcccchhhhcchHHHHHHHHHHHHhhHHHHHHHHhcCCCCceeeeeeeeecccccccCCCCCCccCCCCCCcccc
No 116
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=49.14 E-value=77 Score=33.98 Aligned_cols=116 Identities=5% Similarity=0.026 Sum_probs=69.6
Q ss_pred CChHHHHH---HHHHhhhcCCc-------cccchhhHHHHHHHHhhhcCCHHHHHHHHHHHHHhhcCCCcccccchhhhH
Q 009716 187 SNSTVFKQ---ALLSLAMDSGL-------HPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHIHIEPYLHQMM 256 (528)
Q Consensus 187 ~~~~~r~~---AL~sL~tD~gL-------~qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~Np~L~LepYLHqLl 256 (528)
++...+.. +|..|..+..- ...+|.++..+.+. .+........+.+..|..++......+-...+
T Consensus 26 ~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~-----~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~i 100 (644)
T 2z6h_A 26 EDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNT-----NDVETARCTAGTLHNLSHHREGLLAIFKSGGI 100 (644)
T ss_dssp SCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSC-----CCHHHHHHHHHHHHHHTTSHHHHHHHHTTTHH
T ss_pred CCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcC-----CCHHHHHHHHHHHHHHhcChhhHHHHHHcCCH
Confidence 34444444 44556665541 13456666555421 24555556666667777766533333334578
Q ss_pred HHHHHHHhccccCCCCCCCchHHHHHHHHHHHHHHHHhCCCchhH-HHHHHHHHHHHhcCC
Q 009716 257 PSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNL-QSRVTRTLLHAFLDP 316 (528)
Q Consensus 257 PsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~~y~~L-~~RI~~tL~k~llDp 316 (528)
|.++.++- .....+|..|+..|..|+......-..+ +..++..|.+.|.++
T Consensus 101 ~~Lv~lL~---------~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~ 152 (644)
T 2z6h_A 101 PALVKMLG---------SPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT 152 (644)
T ss_dssp HHHHHHTT---------CSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCC
T ss_pred HHHHHHHh---------CCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcC
Confidence 88777752 1236899999999999998754322222 355677888888765
No 117
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=48.74 E-value=10 Score=30.07 Aligned_cols=42 Identities=17% Similarity=0.147 Sum_probs=33.7
Q ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhcc
Q 009716 27 LALAPDVE----YRVREIMQEAIKCMRHAHRTVLTANDVDSALNLR 68 (528)
Q Consensus 27 ~~La~dve----yrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~~ 68 (528)
..||+..+ -.|..++++|...+.+..+..++.+|+..|++..
T Consensus 26 ~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~df~~Al~~~ 71 (83)
T 3aji_B 26 EDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTV 71 (83)
T ss_dssp HHHHTSSCCCCHHHHHHHHHHHHHGGGTSCCSSBCHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHH
Confidence 44554443 5688899999999998888999999999999763
No 118
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=47.23 E-value=49 Score=34.42 Aligned_cols=59 Identities=17% Similarity=0.166 Sum_probs=45.8
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHH-HH---HHHHHHHHHHHHHHHhCCCccCHhhHHHHHhcc
Q 009716 9 IEVIAQSIGVYNLSSDVALALAPDV-EY---RVREIMQEAIKCMRHAHRTVLTANDVDSALNLR 68 (528)
Q Consensus 9 V~~iAes~Gi~~Lsdeaa~~La~dv-ey---rlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~~ 68 (528)
++..++..|+ .++++++..++.-. +- +...+++.|.-++...++.++|.+||..|+...
T Consensus 375 L~~~~~~~~~-~~~~~~~~~i~~~a~~g~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~~~~~~~ 437 (456)
T 2c9o_A 375 IKIRAQTEGI-NISEEALNHLGEIGTKTTLRYSVQLLTPANLLAKINGKDSIEKEHVEEISELF 437 (456)
T ss_dssp HHHHHHHHTC-CBCHHHHHHHHHHHHHSCHHHHHHTHHHHHHHHHHTTCSSBCHHHHHHHHHHS
T ss_pred HHHHHHHhCC-CCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHHHHh
Confidence 3444556677 59999999998876 32 356677788888888899999999999999773
No 119
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=45.76 E-value=1.8e+02 Score=33.88 Aligned_cols=90 Identities=13% Similarity=0.149 Sum_probs=55.1
Q ss_pred HHHHHHHhhcCCCcccccchhhhHHHHHHHHhccccCCCCCCCchHHHHHHHHHHHHHHHHhCCCchh--------HHHH
Q 009716 233 LMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQN--------LQSR 304 (528)
Q Consensus 233 llrmv~ALl~Np~L~LepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~~y~~--------L~~R 304 (528)
+-|..+=+..|| +++|++|..++..- .++|-.+.+.|+..+..||.+++....+ --.-
T Consensus 524 lGry~~wl~~~~---------~~L~~vl~~L~~~l-----~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~ 589 (1023)
T 4hat_C 524 VGQYPRFLKAHW---------NFLRTVILKLFEFM-----HETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQT 589 (1023)
T ss_dssp HHTCHHHHHHCH---------HHHHHHHHHHHHHT-----TCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHH
T ss_pred HHHHHHHHhccH---------HHHHHHHHHHHHHh-----hcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHH
Confidence 345555554443 34666666665532 2456689999999999999988754321 3345
Q ss_pred HHHHHHHHhcC-CCCCchhhhhHHHHHHh-hChh
Q 009716 305 VTRTLLHAFLD-PTKSLSQHYGAIQGLAA-LGPS 336 (528)
Q Consensus 305 I~~tL~k~llD-p~k~l~t~YGAI~GL~a-LG~~ 336 (528)
|++.+.+++.+ +.+.....|.||.-+.. +|..
T Consensus 590 il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~~~ 623 (1023)
T 4hat_C 590 IIRDIQKTTADLQPQQVHTFYKACGIIISEERSV 623 (1023)
T ss_dssp HHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCCSH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCH
Confidence 77777777642 12345567777776554 4543
No 120
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=45.19 E-value=60 Score=31.63 Aligned_cols=50 Identities=18% Similarity=0.041 Sum_probs=43.3
Q ss_pred CCCCHHHHHHHHHHHH------HHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhcc
Q 009716 19 YNLSSDVALALAPDVE------YRVREIMQEAIKCMRHAHRTVLTANDVDSALNLR 68 (528)
Q Consensus 19 ~~Lsdeaa~~La~dve------yrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~~ 68 (528)
..+++++++.+++.+. .++..+++.|..++...++.+++.+||..|+...
T Consensus 221 ~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~ 276 (387)
T 2v1u_A 221 GVLDPDVVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVYSARAEI 276 (387)
T ss_dssp TTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 3689999999999888 5677888999988888888999999999999765
No 121
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=44.67 E-value=70 Score=35.65 Aligned_cols=117 Identities=6% Similarity=0.020 Sum_probs=66.3
Q ss_pred CCChHHHHHHHH---HhhhcCC-------ccccchhhHHHHHHHHhhhcCCHHHHHHHHHHHHHhhcCCCcccccchhhh
Q 009716 186 RSNSTVFKQALL---SLAMDSG-------LHPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHIHIEPYLHQM 255 (528)
Q Consensus 186 ~~~~~~r~~AL~---sL~tD~g-------L~qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~Np~L~LepYLHqL 255 (528)
..+...+..|+. .|..+.. ....+|.++.++... .+........+.+..|..++.-.-.-.-...
T Consensus 161 ~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~-----~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~ 235 (780)
T 2z6g_A 161 DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNT-----NDVETARCTSGTLHNLSHHREGLLAIFKSGG 235 (780)
T ss_dssp CSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHTSHHHHHHHHHTTH
T ss_pred CCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCC-----CCHHHHHHHHHHHHHHhCCchhHHHHHHcCC
Confidence 445556665554 4444321 224566666655422 2455555556666666665432111111246
Q ss_pred HHHHHHHHhccccCCCCCCCchHHHHHHHHHHHHHHHHhCCCchhH-HHHHHHHHHHHhcCC
Q 009716 256 MPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNL-QSRVTRTLLHAFLDP 316 (528)
Q Consensus 256 lPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~~y~~L-~~RI~~tL~k~llDp 316 (528)
+|.++.++- ..+-.+|..|+..|..||..+...-..+ ...++..|.+.+.++
T Consensus 236 I~~Lv~lL~---------~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~ 288 (780)
T 2z6g_A 236 IPALVNMLG---------SPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT 288 (780)
T ss_dssp HHHHHHHTT---------CSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCC
T ss_pred HHHHHHHHc---------CCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcC
Confidence 777777652 1246899999999999998755432223 245667888888753
No 122
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=44.56 E-value=14 Score=36.09 Aligned_cols=57 Identities=12% Similarity=0.082 Sum_probs=39.5
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----CccCHhhHHHHHh
Q 009716 9 IEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHR----TVLTANDVDSALN 66 (528)
Q Consensus 9 V~~iAes~Gi~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR----~~Lt~~DI~~AL~ 66 (528)
++.+++.-|+ .++++++..|++...-.+|++++..-+....+++ ..+|.+||..++.
T Consensus 201 l~~~~~~~~~-~i~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~~~~~~~~~It~~~v~~~~~ 261 (353)
T 1sxj_D 201 LRFISEQENV-KCDDGVLERILDISAGDLRRGITLLQSASKGAQYLGDGKNITSTQVEELAG 261 (353)
T ss_dssp HHHHHHTTTC-CCCHHHHHHHHHHTSSCHHHHHHHHHHTHHHHHHHCSCCCCCHHHHHHHHT
T ss_pred HHHHHHHhCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCccCccccHHHHHHHhC
Confidence 3444455677 5999999999998776666665554444433333 2899999998875
No 123
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=43.19 E-value=1.2e+02 Score=30.84 Aligned_cols=96 Identities=4% Similarity=-0.002 Sum_probs=58.5
Q ss_pred ccchhhHHHHHHHHhhhcCCHHHHHHHHHHHHHhhcCCCcccccchhhhHHHHHHHHhccccCCCCCCCchHHHHHHHHH
Q 009716 207 PLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADL 286 (528)
Q Consensus 207 qLLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~Np~L~LepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~l 286 (528)
..+|.++..+... .+........+.+..|..++...-.-.-...+|.++.++- +++..+|..|+..
T Consensus 59 ~~i~~Lv~~L~~~-----~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~L~~lL~---------~~~~~v~~~a~~~ 124 (529)
T 1jdh_A 59 QMVSAIVRTMQNT-----NDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLG---------SPVDSVLFYAITT 124 (529)
T ss_dssp HHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTT---------CSCHHHHHHHHHH
T ss_pred chHHHHHHHHhcC-----CCHHHHHHHHHHHHHHHcCchhHHHHHHcCCHHHHHHHHc---------CCCHHHHHHHHHH
Confidence 3566666655421 2555555666666777666542111122357887777642 1236899999999
Q ss_pred HHHHHHHhCCCchhH-HHHHHHHHHHHhcCC
Q 009716 287 IASICTRFGHVYQNL-QSRVTRTLLHAFLDP 316 (528)
Q Consensus 287 L~~I~~kf~~~y~~L-~~RI~~tL~k~llDp 316 (528)
|..||......-..+ +..++..|.+.+.++
T Consensus 125 L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~ 155 (529)
T 1jdh_A 125 LHNLLLHQEGAKMAVRLAGGLQKMVALLNKT 155 (529)
T ss_dssp HHHHHHHCTTHHHHHHHHTHHHHHHHGGGCC
T ss_pred HHHHhcCCcchHHHHHHcCCHHHHHHHHhcC
Confidence 999998654322222 355677888888764
No 124
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=42.42 E-value=1.3e+02 Score=35.58 Aligned_cols=160 Identities=15% Similarity=0.121 Sum_probs=96.7
Q ss_pred HHHHHHHHHHhhcCCCcccccchhhhHHHHHHHHhccccCCCCCCCchHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHH
Q 009716 230 LFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTL 309 (528)
Q Consensus 230 L~~llrmv~ALl~Np~L~LepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~~y~~L~~RI~~tL 309 (528)
+..+++.+.....++++. ..++|.++..+++-. .+|=.+|..+-.+++..+.-++ ..+.+-+.++..+
T Consensus 510 leav~~~~~~~~e~~~l~-----~~~~~~Ll~~ll~~~------~~~p~l~~~~i~~l~~l~~~~~-~~p~~L~~vL~~l 577 (1204)
T 3a6p_A 510 LESVITQMFRTLNREEIP-----VNDGIELLQMVLNFD------TKDPLILSCVLTNVSALFPFVT-YRPEFLPQVFSKL 577 (1204)
T ss_dssp HHHHHHHHHHHSCTTCCC-----HHHHHHHHHHHHHCC------CSCHHHHHHHHHHHHHHGGGGG-TCGGGHHHHHHHH
T ss_pred HHHHHHHHhccccccccc-----HHHHHHHHHHHHhCC------CCChHHHHHHHHHHHHHHHHHh-cCchHHHHHHHHH
Confidence 344444444444444331 145666666655421 1233699999999988887655 3578888999988
Q ss_pred HHHhcCCCC----------CchhhhhHHHHHHhhChhhhhhhcccchHHHHHhhhhhhhhHhhhhhhhHHHHHHHHHHHH
Q 009716 310 LHAFLDPTK----------SLSQHYGAIQGLAALGPSVVHLLILPNLELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQ 379 (528)
Q Consensus 310 ~k~llDp~k----------~l~t~YGAI~GL~aLG~~aVr~lilP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~v~~all 379 (528)
.+.+.++.. .-..+.=|-.+|..|..+.- ..++|++..+...++..+.... .....|-..+|.||+
T Consensus 578 l~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~~-~~L~p~~~~i~~~~~~~l~~~~---~l~~~e~~~L~eal~ 653 (1204)
T 3a6p_A 578 FSSVTFETVEESKAPRTRAVRNVRRHACSSIIKMCRDYP-QLVLPNFDMLYNHVKQLLSNEL---LLTQMEKCALMEALV 653 (1204)
T ss_dssp HHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHCH-HHHGGGHHHHHHHHHHHHHSTT---TSCHHHHHHHHHHHH
T ss_pred HHhhccCCcccccccccHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHhCcc---cccHHHHHHHHHHHH
Confidence 888876211 11234455556666665543 4578999999988877664211 034566777888886
Q ss_pred Hhhhh-hhhhccchh--ccCCCcchhhcc
Q 009716 380 CAAGL-CVYDRLKTV--LLRPPKQSRWES 405 (528)
Q Consensus 380 ~a~g~-~~~~~~~~~--~~~~~~~~~~~~ 405 (528)
..+.. .-+++-..+ .+.+|....|.+
T Consensus 654 ~ia~~~~~~~~~~~~l~~ll~P~~~~w~~ 682 (1204)
T 3a6p_A 654 LISNQFKNYERQKVFLEELMAPVASIWLS 682 (1204)
T ss_dssp HHHGGGCCHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHhccCCCHHHHHHHHHHHHHHHHHHHcc
Confidence 65322 124444443 446777777774
No 125
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=42.20 E-value=3.1e+02 Score=28.39 Aligned_cols=132 Identities=19% Similarity=0.282 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHhh-cCCCcccccchhhhHHHHHHHHhccccCCCCCCCchHHHHHHHHHHHHHHHHhCCCchhHHHHHH
Q 009716 228 SLLFALMRVARSLL-RNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVT 306 (528)
Q Consensus 228 ~~L~~llrmv~ALl-~Np~L~LepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~~y~~L~~RI~ 306 (528)
.++..|-++=+=++ .||+ .+.+++|.++.... +..-++|.+.+.+|+..|++ ...+-++++
T Consensus 41 ~Kl~~L~q~~EL~l~~dps-----Ll~~fl~~il~f~~---------d~~~~vRk~~a~FieEa~~~----~~el~~~~l 102 (386)
T 3o2t_A 41 SKITVLKQVQELIINKDPT-----LLDNFLDEIIAFQA---------DKSIEVRKFVIGFIEEACKR----DIELLLKLI 102 (386)
T ss_dssp HHHHHHHHHHHHHHTTCGG-----GGGGGHHHHHGGGG---------CSCHHHHHHHHHHHHHHHHH----CGGGHHHHH
T ss_pred HHHHHHHHHHHHHhccCHH-----HHHHHHHHHHHhcc---------CCcHHHHHHHHHHHHHHHHH----HHHHHHHHH
Confidence 44444444444223 4554 34555665554432 33568999999999999986 466789999
Q ss_pred HHHHHHhcCCCCCchhhhhHHHHHHhhChhhhhhhc-ccc----hHHHHHhhhhh---hh-hHhhhhhhhHHHHHHHHHH
Q 009716 307 RTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLI-LPN----LELYLKFLEPE---ML-LEKQKNEMKRHEAWRVYGA 377 (528)
Q Consensus 307 ~tL~k~llDp~k~l~t~YGAI~GL~aLG~~aVr~li-lP~----L~~y~~~Le~~---l~-~~~~~~~~~r~ea~~v~~a 377 (528)
.+|...|.|+ .....=.+|.+...+=+.+.+-++ -|+ ....|+.+..- +. .-...|..+|..+.|+...
T Consensus 103 ~~L~~LL~d~--d~~V~K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~ 180 (386)
T 3o2t_A 103 ANLNMLLRDE--NVNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEG 180 (386)
T ss_dssp HHHHHHHTCS--SHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHH
Confidence 9998888753 344445677777666565555443 233 24556544322 11 1122456677777777666
Q ss_pred HH
Q 009716 378 LQ 379 (528)
Q Consensus 378 ll 379 (528)
++
T Consensus 181 VI 182 (386)
T 3o2t_A 181 LI 182 (386)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 126
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=41.68 E-value=3.6e+02 Score=28.90 Aligned_cols=134 Identities=14% Similarity=0.122 Sum_probs=67.8
Q ss_pred ccccchhhHHHHHHHHhhh---------cCCHHHHHHHHHHHHHhhcCCCcccccchhhhHHHHHHHHhccccCCCCCCC
Q 009716 205 LHPLVPYFTYFISEEVTRS---------LKNFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDN 275 (528)
Q Consensus 205 L~qLLPYfv~FI~e~V~~n---------l~nl~~L~~llrmv~ALl~Np~L~LepYLHqLlPsvLTCll~k~l~~~~~~~ 275 (528)
+..++|.|+..+.+-+..+ ..+--....+++++..+..+. -....-+..+++.++ .+-... ...
T Consensus 217 ~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~-~~~~~~~~~~L~~l~----~~~~~~--~~~ 289 (618)
T 1w63_A 217 FRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRND-DDSSEAMNDILAQVA----TNTETS--KNV 289 (618)
T ss_dssp HHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTC-HHHHHTTHHHHHHHH----HTSCCS--STH
T ss_pred HHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHH----hccccc--cch
Confidence 3456677766665544322 224444455777777766531 001111112222222 211111 122
Q ss_pred chHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhChhhhhhhcccchHHHHHhh
Q 009716 276 HWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLILPNLELYLKFL 353 (528)
Q Consensus 276 hw~LRd~AA~lL~~I~~kf~~~y~~L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~~aVr~lilP~L~~y~~~L 353 (528)
.-++.-.|++.+..+ +. .+.++......|.+.+.++ .....|=|+..|..++...-. .+-++...+...+
T Consensus 290 ~~aV~~ea~~~i~~l----~~-~~~l~~~a~~~L~~~L~~~--d~~vr~~aL~~L~~i~~~~p~-~~~~~~~~i~~~l 359 (618)
T 1w63_A 290 GNAILYETVLTIMDI----KS-ESGLRVLAINILGRFLLNN--DKNIRYVALTSLLKTVQTDHN-AVQRHRSTIVDCL 359 (618)
T ss_dssp HHHHHHHHHHHHHHS----CC-CHHHHHHHHHHHHHHHTCS--STTTHHHHHHHHHHHHHHHHH-HHGGGHHHHHHGG
T ss_pred HHHHHHHHHHHHHhc----CC-CHHHHHHHHHHHHHHHhCC--CCchHHHHHHHHHHHHhhCHH-HHHHHHHHHHHHc
Confidence 346666777766554 22 3566667777777776643 346778888888888654222 2334444444433
No 127
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=41.48 E-value=81 Score=30.54 Aligned_cols=50 Identities=10% Similarity=0.032 Sum_probs=41.7
Q ss_pred CCCCCCHHHHHHHHHHHHH------H-HHHHHHHHHHHHHHhCCCccCHhhHHHHHhc
Q 009716 17 GVYNLSSDVALALAPDVEY------R-VREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (528)
Q Consensus 17 Gi~~Lsdeaa~~La~dvey------r-lreIiqeA~kfm~hskR~~Lt~~DI~~AL~~ 67 (528)
++ .+++++...|+..... | +..+++.|..++.-.+|..++.+||..|+..
T Consensus 265 ~~-~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~~v~~~~v~~a~~~ 321 (350)
T 1g8p_A 265 KV-EAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGATAVGRDHLKRVATM 321 (350)
T ss_dssp GC-BCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHH
T ss_pred CC-CCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHH
Confidence 55 7999999999988765 2 5677777888888888999999999999876
No 128
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=41.47 E-value=38 Score=37.84 Aligned_cols=94 Identities=12% Similarity=0.119 Sum_probs=55.9
Q ss_pred CHHHHHHHHHHHHHhhcCCCcccccchhhhHHHHHHHHhccccCCCCCCCchHHHHHHHHHHHHHHHHhCCCchhHH---
Q 009716 226 NFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQ--- 302 (528)
Q Consensus 226 nl~~L~~llrmv~ALl~Np~L~LepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~~y~~L~--- 302 (528)
+.......+..+..|..+..-. .-...++|.++..+ ...+|.+|..|+.+|+.|+... +..+
T Consensus 373 ~~~~~~~a~~~L~~L~~~~~~~--~~~~~~i~~Lv~lL---------~~~d~~vr~~A~~aL~~L~~~~----~~~~~~i 437 (780)
T 2z6g_A 373 SQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLL---------GSDDINVVTCAAGILSNLTCNN----YKNKMMV 437 (780)
T ss_dssp CHHHHHHHHHHHHHHHTTCTTC--SCCHHHHHHHHHHT---------TCSCHHHHHHHHHHHHHHTSSC----HHHHHHH
T ss_pred chHHHHHHHHHHHHHhccchhh--hhhhhHHHHHHHHH---------cCCCHHHHHHHHHHHHHHHhCC----HHHHHHH
Confidence 3444555566666666655321 12356788777764 1357899999999999997631 1111
Q ss_pred --HHHHHHHHHHhcCCCCCchhhhhHHHHHHhhC
Q 009716 303 --SRVTRTLLHAFLDPTKSLSQHYGAIQGLAALG 334 (528)
Q Consensus 303 --~RI~~tL~k~llDp~k~l~t~YGAI~GL~aLG 334 (528)
...+..|.+.|.++..+-...+-|+.+|..|.
T Consensus 438 ~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~ 471 (780)
T 2z6g_A 438 CQVGGIEALVRTVLRAGDREDITEPAICALRHLT 471 (780)
T ss_dssp HTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 12344555555543333356677777777774
No 129
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=39.68 E-value=15 Score=34.25 Aligned_cols=59 Identities=19% Similarity=0.104 Sum_probs=38.0
Q ss_pred HHHHHHHHcCCCCCCHH-HHHHHHHHHH----HHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhc
Q 009716 8 TIEVIAQSIGVYNLSSD-VALALAPDVE----YRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (528)
Q Consensus 8 ~V~~iAes~Gi~~Lsde-aa~~La~dve----yrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~ 67 (528)
-++..++..|+. .+++ ....|+.... ..|+.++++|...+...++..++.+|+..|++.
T Consensus 185 il~~~~~~~~~~-~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a~~~~~~~i~~~d~~~a~~~ 248 (262)
T 2qz4_A 185 IFEQHLKSLKLT-QSSTFYSQRLAELTPGFSGADIANICNEAALHAAREGHTSVHTLNFEYAVER 248 (262)
T ss_dssp HHHHHHHHTTCC-BTHHHHHHHHHHTCTTCCHHHHHHHHHHHHTC--------CCBCCHHHHHHH
T ss_pred HHHHHHHhCCCC-cchhhHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 455667788884 5554 3466776543 368899999999998888999999999999875
No 130
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=39.29 E-value=23 Score=33.61 Aligned_cols=43 Identities=21% Similarity=0.122 Sum_probs=35.2
Q ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhcc
Q 009716 26 ALALAPDVE----YRVREIMQEAIKCMRHAHRTVLTANDVDSALNLR 68 (528)
Q Consensus 26 a~~La~dve----yrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~~ 68 (528)
...|+...+ ..|+.++++|...+....+..++.+||..|++..
T Consensus 212 ~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~~~~I~~~d~~~al~~~ 258 (285)
T 3h4m_A 212 LEEIAKMTEGCVGAELKAICTEAGMNAIRELRDYVTMDDFRKAVEKI 258 (285)
T ss_dssp HHHHHHHCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCcCCHHHHHHHHHHH
Confidence 455555544 3789999999999999999999999999999763
No 131
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=38.80 E-value=2.8e+02 Score=26.80 Aligned_cols=81 Identities=16% Similarity=0.222 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhChhhhhhhcccchHHHHHhhhhhh
Q 009716 278 DLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLILPNLELYLKFLEPEM 357 (528)
Q Consensus 278 ~LRd~AA~lL~~I~~kf~~~y~~L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~~aVr~lilP~L~~y~~~Le~~l 357 (528)
.+|---+..|..|.+- ||.+-+-|.+-+...+.+|+ -.-.--|+-=+.+||.+-.| .+.|+|+.+...|...
T Consensus 122 kikIn~~yaLeeIara----nP~l~~~v~rdi~smltskd--~~Dkl~aLnFi~alGen~~~-yv~PfLprL~aLL~D~- 193 (253)
T 2db0_A 122 KTKINVSYALEEIAKA----NPMLMASIVRDFMSMLSSKN--REDKLTALNFIEAMGENSFK-YVNPFLPRIINLLHDG- 193 (253)
T ss_dssp HHHHHHHHHHHHHHHH----CHHHHHHHHHHHHHHTSCSS--HHHHHHHHHHHHTCCTTTHH-HHGGGHHHHHGGGGCS-
T ss_pred cceecHHHHHHHHHHh----ChHHHHHHHHHHHHHhcCCC--hHHHHHHHHHHHHHhccCcc-ccCcchHHHHHHHcCc-
Confidence 6777788888888875 78899999999999988655 44566788888999998888 4889999988776543
Q ss_pred hhHhhhhhhhHHHHH
Q 009716 358 LLEKQKNEMKRHEAW 372 (528)
Q Consensus 358 ~~~~~~~~~~r~ea~ 372 (528)
|+++|.-|.
T Consensus 194 ------deiVRaSaV 202 (253)
T 2db0_A 194 ------DEIVRASAV 202 (253)
T ss_dssp ------SHHHHHHHH
T ss_pred ------chhhhHHHH
Confidence 566666554
No 132
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=38.77 E-value=41 Score=32.94 Aligned_cols=57 Identities=14% Similarity=0.152 Sum_probs=42.6
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHh
Q 009716 8 TIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALN 66 (528)
Q Consensus 8 ~V~~iAes~Gi~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~ 66 (528)
.++.+++..|+ .++++++..|++...-.++.+.+..-+....+ ..++|.+||+.++.
T Consensus 186 ~l~~~~~~~~~-~~~~~a~~~l~~~~~G~~r~~~~~l~~~~~~~-~~~i~~~~v~~~~~ 242 (373)
T 1jr3_A 186 QLEHILNEEHI-AHEPRALQLLARAAEGSLRDALSLTDQAIASG-DGQVSTQAVSAMLG 242 (373)
T ss_dssp HHHHHHHHHTC-CBCHHHHHHHHHHSSSCHHHHHHHHHHHHHHT-TTCBCHHHHHHHTT
T ss_pred HHHHHHHHcCC-CCCHHHHHHHHHHCCCCHHHHHHHHHHHHHhc-CCcccHHHHHHHhC
Confidence 44555677788 59999999999888767777766665655554 46799999988874
No 133
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=37.80 E-value=57 Score=35.30 Aligned_cols=59 Identities=12% Similarity=0.234 Sum_probs=46.1
Q ss_pred HHHHHHHcC----CCCCCHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhc
Q 009716 9 IEVIAQSIG----VYNLSSDVALALAPDVE-------------YRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (528)
Q Consensus 9 V~~iAes~G----i~~Lsdeaa~~La~dve-------------yrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~ 67 (528)
++.+++.++ ...+++++...|.+.-. -.+..+++.|..+++...+..++.+||..|++.
T Consensus 299 l~~~~~~~~~~~~~~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 299 VQFVAQEVKRDGKIPHFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAVKM 374 (604)
T ss_dssp HHHHHHHHHHHCSSCCBBHHHHHHHHHHHHHTTCSTTEEECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHhhccCcccCCHHHHHHHHHHHhhhhccccccccCHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHh
Confidence 344454443 34799999999988653 337788999999999999999999999999954
No 134
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=37.26 E-value=72 Score=32.45 Aligned_cols=98 Identities=12% Similarity=0.087 Sum_probs=58.0
Q ss_pred CHHHHHHHHHHHHHhhcCCCcccccchhhhHHHHHHHHhccccCCCCCCCchHHHHHHHHHHHHHHHHhC-CCchhHHHH
Q 009716 226 NFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFG-HVYQNLQSR 304 (528)
Q Consensus 226 nl~~L~~llrmv~ALl~Np~L~LepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~-~~y~~L~~R 304 (528)
+.......+..+..|..++.-. .....++|.++..+- .....+|..|+..|+.++.... ....-.+..
T Consensus 240 ~~~~~~~a~~~L~~l~~~~~~~--~~~~~~i~~L~~ll~---------~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~ 308 (529)
T 1jdh_A 240 SQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLG---------SDDINVVTCAAGILSNLTCNNYKNKMMVCQVG 308 (529)
T ss_dssp CHHHHHHHHHHHHHHHTTCTTC--SCCHHHHHHHHHHTT---------CSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTT
T ss_pred ChHHHHHHHHHHHHHhcCChhh--HHHHhHHHHHHHHHc---------CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcC
Confidence 3445555666666776664322 234577887777651 2356899999999999976311 000111122
Q ss_pred HHHHHHHHhcCCCCCchhhhhHHHHHHhhC
Q 009716 305 VTRTLLHAFLDPTKSLSQHYGAIQGLAALG 334 (528)
Q Consensus 305 I~~tL~k~llDp~k~l~t~YGAI~GL~aLG 334 (528)
.+..|.+.+.++.........|+..|..|.
T Consensus 309 ~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~ 338 (529)
T 1jdh_A 309 GIEALVRTVLRAGDREDITEPAICALRHLT 338 (529)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 344556665543334566788888888874
No 135
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=36.89 E-value=1.4e+02 Score=28.76 Aligned_cols=50 Identities=14% Similarity=-0.005 Sum_probs=41.3
Q ss_pred CCCCHHHHHHHHHHHH------HHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhcc
Q 009716 19 YNLSSDVALALAPDVE------YRVREIMQEAIKCMRHAHRTVLTANDVDSALNLR 68 (528)
Q Consensus 19 ~~Lsdeaa~~La~dve------yrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~~ 68 (528)
..+++++...+++... ..+.++++.|...+...++.+++.+||..|+...
T Consensus 217 ~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~ 272 (386)
T 2qby_A 217 GVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEI 272 (386)
T ss_dssp SCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHH
Confidence 4689999999998876 2466788888888887788899999999998764
No 136
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=36.58 E-value=2.4e+02 Score=32.11 Aligned_cols=141 Identities=15% Similarity=0.193 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHHhhcCCCcccccchhhhHHHHHHHHhccccCCCCCCCchHHHHHHHHHHHHHHH------HhCCCchh
Q 009716 227 FSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICT------RFGHVYQN 300 (528)
Q Consensus 227 l~~L~~llrmv~ALl~Np~L~LepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~------kf~~~y~~ 300 (528)
........+++.+|..|+...-.--=+.-+|++|..+....- ..+ ..|..||..|++|.- -|+. |..
T Consensus 471 ~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~----~~~--~~k~~AA~ALArLlis~np~~~f~~-~~~ 543 (778)
T 3opb_A 471 PNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQD----IGE--PIRILGCRALTRMLIFTNPGLIFKK-YSA 543 (778)
T ss_dssp HHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC-------CC--HHHHHHHHHHHHHHHTSCHHHHSSS-SCS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCC----cch--HHHHHHHHHHHHHHhcCCHHHHcCC-Ccc
Confidence 444556678888888886654333334567877777644321 011 589999999999984 2331 221
Q ss_pred HHHHHHHHHHHHhc-CCCC-----------CchhhhhHHHHHHhhCh------hhhhhhcccchHHHHHhhhhhhhhHhh
Q 009716 301 LQSRVTRTLLHAFL-DPTK-----------SLSQHYGAIQGLAALGP------SVVHLLILPNLELYLKFLEPEMLLEKQ 362 (528)
Q Consensus 301 L~~RI~~tL~k~ll-Dp~k-----------~l~t~YGAI~GL~aLG~------~aVr~lilP~L~~y~~~Le~~l~~~~~ 362 (528)
+ ..++-|.+.|. +|.. +.-.+|-|+.+|..|-. +-+|..|+-. ..+|..|+.-|..
T Consensus 544 ~--~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~-~ga~~~L~~LL~s--- 617 (778)
T 3opb_A 544 L--NAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVST-KVYWSTIENLMLD--- 617 (778)
T ss_dssp T--THHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHS-HHHHHHHHHGGGC---
T ss_pred c--cchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHh-cCHHHHHHHHHhC---
Confidence 1 45566666655 2332 11248999999887722 3456555432 1266667666643
Q ss_pred hhhhhHHHHHHHHHHHHH
Q 009716 363 KNEMKRHEAWRVYGALQC 380 (528)
Q Consensus 363 ~~~~~r~ea~~v~~all~ 380 (528)
.+..+|..|..+...|..
T Consensus 618 ~n~~VrrAA~elI~NL~~ 635 (778)
T 3opb_A 618 ENVPLQRSTLELISNMMS 635 (778)
T ss_dssp SSHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHhC
Confidence 356778888888888875
No 137
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=35.63 E-value=2.3e+02 Score=32.74 Aligned_cols=97 Identities=13% Similarity=0.056 Sum_probs=58.0
Q ss_pred cccchhhHHHHHHHHhhhcC--CHHH-----HHHHHHHHHHhhcCCCcccccchhhhHHHHHHHHhccccCCCCCCCchH
Q 009716 206 HPLVPYFTYFISEEVTRSLK--NFSL-----LFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWD 278 (528)
Q Consensus 206 ~qLLPYfv~FI~e~V~~nl~--nl~~-----L~~llrmv~ALl~Np~L~LepYLHqLlPsvLTCll~k~l~~~~~~~hw~ 278 (528)
..-+|+++.++..-+..++. ..+. +..+-|...=+..|| +.+|++|..++..+.- .+.+=.
T Consensus 485 ~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~---------~~l~~~L~~ll~~~gl---~~~~~~ 552 (980)
T 3ibv_A 485 DKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYES---------AAIPALIEYFVGPRGI---HNTNER 552 (980)
T ss_dssp SCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCC---------TTHHHHHHHHTSTTTT---TCCCTT
T ss_pred cchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCc---------hhHHHHHHHHhccccc---cCCChh
Confidence 35667777777655543331 1111 222334444444443 5677888887763211 133447
Q ss_pred HHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhc
Q 009716 279 LRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFL 314 (528)
Q Consensus 279 LRd~AA~lL~~I~~kf~~~y~~L~~RI~~tL~k~ll 314 (528)
+|..|+.++..+|+.+...-..--..|+..+...|.
T Consensus 553 V~~~a~~af~~f~~~~~~~L~~~~~~il~~l~~lL~ 588 (980)
T 3ibv_A 553 VRPRAWYLFYRFVKSIKKQVVNYTESSLAMLGDLLN 588 (980)
T ss_dssp THHHHHHHHHHHHHHTTTTCSSSHHHHHHHTTGGGC
T ss_pred HHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHHhhc
Confidence 899999999999998886554444557777766654
No 138
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=34.51 E-value=74 Score=30.21 Aligned_cols=56 Identities=14% Similarity=0.127 Sum_probs=41.8
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHh
Q 009716 8 TIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALN 66 (528)
Q Consensus 8 ~V~~iAes~Gi~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~ 66 (528)
.++.+++..|+ .++++++..|++...-.++.+++..-+..... ..+|.+||..++.
T Consensus 174 ~l~~~~~~~~~-~~~~~~~~~l~~~~~G~~r~a~~~l~~~~~~~--~~i~~~~v~~~~~ 229 (323)
T 1sxj_B 174 RLLQIIKLEDV-KYTNDGLEAIIFTAEGDMRQAINNLQSTVAGH--GLVNADNVFKIVD 229 (323)
T ss_dssp HHHHHHHHHTC-CBCHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--SSBCHHHHHHHHT
T ss_pred HHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC--CCcCHHHHHHHHC
Confidence 34555566788 59999999999988877777776665555433 4799999998874
No 139
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=34.11 E-value=23 Score=29.75 Aligned_cols=51 Identities=24% Similarity=0.368 Sum_probs=38.7
Q ss_pred CCchHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhChh
Q 009716 274 DNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPS 336 (528)
Q Consensus 274 ~~hw~LRd~AA~lL~~I~~kf~~~y~~L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~~ 336 (528)
+.+|.+|..|+..|+.+.. ++.+..|.+.+.|+ .....+.|+.+|..+|..
T Consensus 53 d~~~~vR~~A~~aL~~~~~----------~~a~~~L~~~L~d~--~~~VR~~A~~aL~~~~~~ 103 (131)
T 1te4_A 53 NEDWRIRGAAAWIIGNFQD----------ERAVEPLIKLLEDD--SGFVRSGAARSLEQIGGE 103 (131)
T ss_dssp CSCHHHHHHHHHHHGGGCS----------HHHHHHHHHHHHHC--CTHHHHHHHHHHHHHCSH
T ss_pred CCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHcCC--CHHHHHHHHHHHHHhCcH
Confidence 4679999999999987652 34566666776654 567789999999999853
No 140
>3v9r_B MHF2, uncharacterized protein YDL160C-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=33.85 E-value=56 Score=27.28 Aligned_cols=61 Identities=11% Similarity=0.223 Sum_probs=44.9
Q ss_pred CChHHHHHHHHHcCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-------CccCHhhHHHHH
Q 009716 4 VPKETIEVIAQSIGV----YNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHR-------TVLTANDVDSAL 65 (528)
Q Consensus 4 ~~~e~V~~iAes~Gi----~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR-------~~Lt~~DI~~AL 65 (528)
+|+++|-+|-. ... ++++.|+...+++.++-.+||.+-.|..-.+...- ..|+.+|.+.-.
T Consensus 2 ip~~llaRIL~-~~F~~~kTrIt~da~~lv~kY~diFVrEAv~Rs~e~ke~~~~~~~~~~d~~LeveDLEkia 73 (88)
T 3v9r_B 2 LSKEALIKILS-QNEGGNDMKIADEVVPMIQKYLDIFIDEAVLRSLQSHKDINGERGDKSPLELSHQDLERIV 73 (88)
T ss_dssp CCSHHHHHHHT-TTSCSSCCEECTTTHHHHHHHHHHHHHHHHHHHHHHHHCC-----------CCHHHHHHHH
T ss_pred CCHHHHHHHHH-HHhCCCCceecHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCeeehHHHHHHH
Confidence 78888888887 444 36899999999999999999999888654443222 378888877644
No 141
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=33.50 E-value=44 Score=31.79 Aligned_cols=55 Identities=16% Similarity=0.094 Sum_probs=41.9
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHH
Q 009716 8 TIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSAL 65 (528)
Q Consensus 8 ~V~~iAes~Gi~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL 65 (528)
.++.+++..|+ .++++++..|+....-.++++++..-+.... ...+|.+||..++
T Consensus 169 ~l~~~~~~~~~-~i~~~~l~~l~~~~~G~~r~~~~~l~~~~~~--~~~i~~~~v~~~~ 223 (319)
T 2chq_A 169 RLLEICEKEGV-KITEDGLEALIYISGGDFRKAINALQGAAAI--GEVVDADTIYQIT 223 (319)
T ss_dssp HHHHHHHTTCC-CBCHHHHHHHHHTTTTCHHHHHHHHHHHHHS--SSCBCHHHHHHHT
T ss_pred HHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHHHc--CCCCCHHHHHHHH
Confidence 45566677788 5999999999988877788877776665543 3479999998875
No 142
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=31.70 E-value=4.1e+02 Score=28.22 Aligned_cols=98 Identities=12% Similarity=0.085 Sum_probs=59.0
Q ss_pred CHHHHHHHHHHHHHhhcCCCcccccchhhhHHHHHHHHhccccCCCCCCCchHHHHHHHHHHHHHHHHhCC-CchhHHHH
Q 009716 226 NFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGH-VYQNLQSR 304 (528)
Q Consensus 226 nl~~L~~llrmv~ALl~Np~L~LepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~-~y~~L~~R 304 (528)
+.......+..+..|..+..-. .....++|.++..+- ...+.+|..|+..|..++..... .-.-++..
T Consensus 237 ~~~~~~~a~~~L~nL~~~~~~~--~~~~~~i~~Lv~lL~---------~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g 305 (644)
T 2z6h_A 237 SQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLG---------SDDINVVTCAAGILSNLTCNNYKNKMMVCQVG 305 (644)
T ss_dssp CHHHHHHHHHHHHHHGGGCTTC--CSCHHHHHHHHHHTT---------CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHhhcchhh--hhhhhHHHHHHHHHc---------CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcC
Confidence 4555666677777777654321 234567777776642 33579999999999999873110 00111222
Q ss_pred HHHHHHHHhcCCCCCchhhhhHHHHHHhhC
Q 009716 305 VTRTLLHAFLDPTKSLSQHYGAIQGLAALG 334 (528)
Q Consensus 305 I~~tL~k~llDp~k~l~t~YGAI~GL~aLG 334 (528)
.+..|.+.+.+..........|+..|..|.
T Consensus 306 ~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~ 335 (644)
T 2z6h_A 306 GIEALVRTVLRAGDREDITEPAICALRHLT 335 (644)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHccCCcHHHHHHHHHHHHHHh
Confidence 455666666543333466778888888884
No 143
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=30.33 E-value=1e+02 Score=30.12 Aligned_cols=63 Identities=13% Similarity=0.135 Sum_probs=45.1
Q ss_pred CChHHHHHHHHHc---CC--CCCCHHHHHHHHHHHH---H---HHHHHHHHHHHHHHHhCCCccCHhhHHHHHhcc
Q 009716 4 VPKETIEVIAQSI---GV--YNLSSDVALALAPDVE---Y---RVREIMQEAIKCMRHAHRTVLTANDVDSALNLR 68 (528)
Q Consensus 4 ~~~e~V~~iAes~---Gi--~~Lsdeaa~~La~dve---y---rlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~~ 68 (528)
++.+.+..+.+.. |. ..+++++++.+++... - ++.++++.|..++. ++.+++.+||..|+...
T Consensus 197 l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~--~~~~i~~~~v~~~~~~~ 270 (384)
T 2qby_B 197 YDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLAS--GGGIIRKEHVDKAIVDY 270 (384)
T ss_dssp CCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT--SSSCCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhc--CCCccCHHHHHHHHHHH
Confidence 3455555555543 33 3689999999998887 2 35567777777666 56789999999998765
No 144
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=29.01 E-value=2e+02 Score=33.17 Aligned_cols=182 Identities=10% Similarity=0.119 Sum_probs=107.2
Q ss_pred cCcHHHHHHHHHHHHHhhcC---------CC----hHHHHHHHHHhhhcC----------CccccchhhHHHHHHHHhhh
Q 009716 167 VLSKELQLYFDKIRELTVSR---------SN----STVFKQALLSLAMDS----------GLHPLVPYFTYFISEEVTRS 223 (528)
Q Consensus 167 ~LSkElQ~Yf~kIt~a~l~~---------~~----~~~r~~AL~sL~tD~----------gL~qLLPYfv~FI~e~V~~n 223 (528)
.+....+.||.++..+++.. ++ ++ ++.+..+|.+- |-...+++...+|..-+...
T Consensus 371 ~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed--~~~F~e~Rk~l~~l~d~~~~l~~~~~l~~~~~~i~~~l~~~ 448 (980)
T 3ibv_A 371 ELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEE--EAEFQEMRKKLKIFQDTINSIDSSLFSSYMYSAITSSLSTA 448 (980)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSST--HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHccCCCccccccccchhH--HHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence 46677788999999887631 11 10 01111122221 12334444444555444433
Q ss_pred c-----CCHHHHHHHHHHHHHh---hcCCCcc---cccchhhhHHHHHHHHhccccCCCCCCCchHHHHHHHHHHHHHHH
Q 009716 224 L-----KNFSLLFALMRVARSL---LRNPHIH---IEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICT 292 (528)
Q Consensus 224 l-----~nl~~L~~llrmv~AL---l~Np~L~---LepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~ 292 (528)
+ .++..+..-+..+.++ +.|.... ..+++.+|++.+...+-+ .+ +.+.|-.+|.-+-.++++-++
T Consensus 449 l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s-~i---~~~~hp~V~~~~~~~l~rys~ 524 (980)
T 3ibv_A 449 ATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTS-QV---CRHPHPLVQLLYMEILVRYAS 524 (980)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHS-ST---TTCCCHHHHHHHHHHHHHTGG
T ss_pred hcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhC-CC---CCCCCHHHHHHHHHHHHHHHH
Confidence 3 2355555555554454 3332222 345666777655444332 22 246799999999999998887
Q ss_pred HhCCCchhHHHHHHHHHHH--HhcCCCCCchhhhhHHHHHHhhChhhhhhhcccchHHHHHhhhhhhh
Q 009716 293 RFGHVYQNLQSRVTRTLLH--AFLDPTKSLSQHYGAIQGLAALGPSVVHLLILPNLELYLKFLEPEML 358 (528)
Q Consensus 293 kf~~~y~~L~~RI~~tL~k--~llDp~k~l~t~YGAI~GL~aLG~~aVr~lilP~L~~y~~~Le~~l~ 358 (528)
=+.. .+..-+.++..+.. .+.|+++.... -|...|..|-.+ .+..+.|++..++..+++.+.
T Consensus 525 ~~~~-~~~~l~~~L~~ll~~~gl~~~~~~V~~--~a~~af~~f~~~-~~~~L~~~~~~il~~l~~lL~ 588 (980)
T 3ibv_A 525 FFDY-ESAAIPALIEYFVGPRGIHNTNERVRP--RAWYLFYRFVKS-IKKQVVNYTESSLAMLGDLLN 588 (980)
T ss_dssp GGGT-CCTTHHHHHHHHTSTTTTTCCCTTTHH--HHHHHHHHHHHH-TTTTCSSSHHHHHHHTTGGGC
T ss_pred HHhc-CchhHHHHHHHHhccccccCCChhHHH--HHHHHHHHHHHH-hhHHhhhHHHHHHHHHHHhhc
Confidence 6654 45677788888877 77777655554 355556665544 344678999999999998775
No 145
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=28.54 E-value=1.9e+02 Score=27.91 Aligned_cols=48 Identities=10% Similarity=0.002 Sum_probs=37.4
Q ss_pred CCCHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHhCCCccCHhhHHHHHhc
Q 009716 20 NLSSDVALALAPDVEY-----------------------RVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (528)
Q Consensus 20 ~Lsdeaa~~La~dvey-----------------------rlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~ 67 (528)
.+++++...+++-+.. .+..+++.|.-++.-.+|..++.+||..|++.
T Consensus 226 ~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~~~v~~~dv~~~~~~ 296 (331)
T 2r44_A 226 TISESLEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNNRDYVLPEDIKEVAYD 296 (331)
T ss_dssp BCCHHHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 5899999988875531 24456777777788889999999999999875
No 146
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=28.52 E-value=99 Score=31.63 Aligned_cols=144 Identities=10% Similarity=0.069 Sum_probs=67.3
Q ss_pred cHHHHHHHHHHHHHhhcCCChHHHHHHHHHhhhcCCccccchhhHHHHHHHHhhhc--CCHHHHHHHHHHHHHhhcCCCc
Q 009716 169 SKELQLYFDKIRELTVSRSNSTVFKQALLSLAMDSGLHPLVPYFTYFISEEVTRSL--KNFSLLFALMRVARSLLRNPHI 246 (528)
Q Consensus 169 SkElQ~Yf~kIt~a~l~~~~~~~r~~AL~sL~tD~gL~qLLPYfv~FI~e~V~~nl--~nl~~L~~llrmv~ALl~Np~L 246 (528)
+.|+-.+...-.+.++...++-.|+.|+-+.. .|.+..|-++.-+.+++..-+ +|.-.+..-+.+...+..+...
T Consensus 133 ~~~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~---kL~~~~pe~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~ 209 (355)
T 3tjz_B 133 DSTMLQAIERYMKQAIVDKVPSVSSSALVSSL---HLLKCSFDVVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRL 209 (355)
T ss_dssp CTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHH---HHTTTCHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHH
T ss_pred CHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH---HHhccCHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhchH
Confidence 44444455454555566667777776663322 345555655555555554444 4555555556666666665422
Q ss_pred ccccchhhhHHHHHHHHhccccCCCCCCCchHHHHHHHHHHHHHHHHhCCCc-hhHHHHHHHHHHHHhcCCCCCchhhhh
Q 009716 247 HIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVY-QNLQSRVTRTLLHAFLDPTKSLSQHYG 325 (528)
Q Consensus 247 ~LepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~~y-~~L~~RI~~tL~k~llDp~k~l~t~YG 325 (528)
-+..|++.+ .+ | ...+.|..= .+-+++.+++... +.....+...+...|. +++-...|.
T Consensus 210 ----a~~kLv~~l-----~~--~--~l~~~~~q~-----~llr~l~~~~~~d~~~~~~~~~~~l~~~L~--~~~~aVvyE 269 (355)
T 3tjz_B 210 ----AVSKMISKF-----TR--H--GLKSPFAYC-----MMIRVASRQLEDEDGSRDSPLFDFIESCLR--NKHEMVVYE 269 (355)
T ss_dssp ----HHHHHHHHH-----HS--S--CCSCHHHHH-----HHHHHHTCC-----------------CCCC--CSSHHHHHH
T ss_pred ----HHHHHHHHH-----hc--C--CCcChHHHH-----HHHHHHHHhccccchhhHHHHHHHHHHHHc--CCChHHHHH
Confidence 222233321 11 1 122444432 2233444666655 5667777777777665 678889999
Q ss_pred HHHHHHhhCh
Q 009716 326 AIQGLAALGP 335 (528)
Q Consensus 326 AI~GL~aLG~ 335 (528)
|+..+..+..
T Consensus 270 a~k~I~~l~~ 279 (355)
T 3tjz_B 270 AASAIVNLPG 279 (355)
T ss_dssp HHHHHTC---
T ss_pred HHHHHHhccC
Confidence 9999999865
No 147
>3ip4_C Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} SCOP: a.137.12.1 PDB: 2df4_C 2dqn_C* 2g5h_C 2g5i_C* 2f2a_C
Probab=28.39 E-value=1e+02 Score=25.71 Aligned_cols=37 Identities=24% Similarity=0.314 Sum_probs=29.9
Q ss_pred CCCCChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHH
Q 009716 1 MSIVPKETIEVIAQSIGVYNLSSDVALALAPDVEYRVR 38 (528)
Q Consensus 1 Ms~~~~e~V~~iAes~Gi~~Lsdeaa~~La~dveyrlr 38 (528)
|..+.++.|+.+|.-.-+ .++++-...++.++...+.
T Consensus 1 Mm~i~~e~v~~iA~LArL-~l~eeE~~~~~~~l~~Il~ 37 (100)
T 3ip4_C 1 MTKVTREEVEHIANLARL-QISPEETEEMANTLESILD 37 (100)
T ss_dssp --CCCHHHHHHHHHHTTC-CCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHHHH
Confidence 667999999999999999 6999988888877765544
No 148
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=27.82 E-value=1e+02 Score=29.88 Aligned_cols=62 Identities=15% Similarity=0.171 Sum_probs=46.6
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhccCC
Q 009716 8 TIEVIAQSIGVYNLSSDVALALAPDVE---YRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNV 70 (528)
Q Consensus 8 ~V~~iAes~Gi~~Lsdeaa~~La~dve---yrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~~nv 70 (528)
-++..++..|+ .++++++..|+.... ..+..+++.+..++....+..++.+|+..++...++
T Consensus 192 il~~~~~~~~~-~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~~~~ 256 (338)
T 3pfi_A 192 ILQKAALKLNK-TCEEKAALEIAKRSRSTPRIALRLLKRVRDFADVNDEEIITEKRANEALNSLGV 256 (338)
T ss_dssp HHHHHHHHTTC-EECHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHTC
T ss_pred HHHHHHHhcCC-CCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHhCC
Confidence 34556677787 599999999998433 235566777777777777889999999999987543
No 149
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=27.20 E-value=92 Score=27.36 Aligned_cols=47 Identities=11% Similarity=0.077 Sum_probs=40.0
Q ss_pred HHHHHHHHcCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 009716 8 TIEVIAQSIGV----YNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRT 54 (528)
Q Consensus 8 ~V~~iAes~Gi----~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~ 54 (528)
-|+.|++...- -+...++..+|-+-.|..+-.+.+++--++.|++|.
T Consensus 10 LVREI~~~~~~~~~~lRfq~~Al~ALQeAsEayLV~lFEd~nlcaiHA~~g 60 (121)
T 2ly8_A 10 LVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHLVPR 60 (121)
T ss_dssp HHHHHHHHHTTCCSSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCC
T ss_pred HHHHHHHHhcCCCCCccccHHHHHHHHHHHHHHHHHHHHHHhHHHHcCCcc
Confidence 46777776532 368999999999999999999999999999999775
No 150
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=26.88 E-value=95 Score=30.98 Aligned_cols=59 Identities=10% Similarity=0.060 Sum_probs=42.8
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHH------------hCCCccCHhhHHHHHhc
Q 009716 8 TIEVIAQSIGVYNLSSDVALALAPDVE----YRVREIMQEAIKCMRH------------AHRTVLTANDVDSALNL 67 (528)
Q Consensus 8 ~V~~iAes~Gi~~Lsdeaa~~La~dve----yrlreIiqeA~kfm~h------------skR~~Lt~~DI~~AL~~ 67 (528)
-++.+++..|+ .++++....|+...+ ..|+.++++|.....+ .....++.+|+..|++.
T Consensus 259 il~~~~~~~~~-~l~~~~l~~la~~t~G~s~~dl~~l~~~a~~~~ir~l~~~~~~~~~~~~~~~i~~~d~~~al~~ 333 (357)
T 3d8b_A 259 IVINLMSKEQC-CLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTADIATITPDQVRPIAYIDFENAFRT 333 (357)
T ss_dssp HHHHHHHTSCB-CCCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHCCC----------CCCBCHHHHHHHHHH
T ss_pred HHHHHHhhcCC-CccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhhhhhccccccccCCcCHHHHHHHHHh
Confidence 34556666776 488999999988665 3688888888766555 33467999999999875
No 151
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=26.49 E-value=5.5e+02 Score=26.46 Aligned_cols=123 Identities=15% Similarity=0.172 Sum_probs=62.0
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHhh------hcCCccc-----cchhhHHHHHHHHhhhcCCHHHHHHHHHHHHHhhcCC
Q 009716 176 FDKIRELTVSRSNSTVFKQALLSLA------MDSGLHP-----LVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNP 244 (528)
Q Consensus 176 f~kIt~a~l~~~~~~~r~~AL~sL~------tD~gL~q-----LLPYfv~FI~e~V~~nl~nl~~L~~llrmv~ALl~Np 244 (528)
.+++++.+-++ |.+.+..|...+| .+|-++. .+|.|++|+... ++......-...+..|....
T Consensus 59 i~~~v~~l~s~-d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~-----~~~~lq~~Aa~aL~nias~~ 132 (510)
T 3ul1_B 59 VEDIVKGINSN-NLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKT-----DCSPIQFESAWALTNIASGT 132 (510)
T ss_dssp HHHHHHHHTSS-CHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCT-----TCHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHhcCC-CHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCC-----CCHHHHHHHHHHHHHHhcCC
Confidence 35566666543 3434444443333 4554443 489999887421 12222222233333333221
Q ss_pred Ccccccch-hhhHHHHHHHHhccccCCCCCCCchHHHHHHHHHHHHHHHHhCCCchhHHHHH-----HHHHHHHhcCCC
Q 009716 245 HIHIEPYL-HQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRV-----TRTLLHAFLDPT 317 (528)
Q Consensus 245 ~L~LepYL-HqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~~y~~L~~RI-----~~tL~k~llDp~ 317 (528)
.=+-.--+ +-.+|.++.++- ..+-.+|+.|+..|+.|+.. .+..+..+ +..|...+.+++
T Consensus 133 ~e~~~~vv~~GaIp~Lv~lL~---------s~~~~v~e~A~~aL~nLa~d----~~~~r~~v~~~G~i~~Ll~lL~~~~ 198 (510)
T 3ul1_B 133 SEQTKAVVDGGAIPAFISLLA---------SPHAHISEQAVWALGNIAGD----GSAFRDLVIKHGAIDPLLALLAVPD 198 (510)
T ss_dssp HHHHHHHHHTTHHHHHHHHTT---------CSCHHHHHHHHHHHHHHHTT----CHHHHHHHHHTTCHHHHHHHTCSSC
T ss_pred HHHHHHHHHCCCHHHHHHHHc---------CCCHHHHHHHHHHHHHHHhC----CHHHHHHHHHcCChHHHHHHHHhcc
Confidence 11111111 236888887762 23458999999999999842 13333333 445666665443
No 152
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=25.88 E-value=2.3e+02 Score=27.53 Aligned_cols=49 Identities=14% Similarity=0.137 Sum_probs=41.6
Q ss_pred CCCHHHHHHHHHHH---------H---HHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhcc
Q 009716 20 NLSSDVALALAPDV---------E---YRVREIMQEAIKCMRHAHRTVLTANDVDSALNLR 68 (528)
Q Consensus 20 ~Lsdeaa~~La~dv---------e---yrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~~ 68 (528)
.++++++..+++.. . .++.++++.|...+...++.+++.+||..|+...
T Consensus 214 ~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~ 274 (389)
T 1fnn_A 214 SYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEV 274 (389)
T ss_dssp SSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Confidence 68999999999988 3 4577888888888888888999999999998764
No 153
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=25.31 E-value=42 Score=32.65 Aligned_cols=57 Identities=16% Similarity=0.068 Sum_probs=39.2
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hCCCcc-CHhhHHHHHhc
Q 009716 9 IEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRH-------AHRTVL-TANDVDSALNL 67 (528)
Q Consensus 9 V~~iAes~Gi~~Lsdeaa~~La~dveyrlreIiqeA~kfm~h-------skR~~L-t~~DI~~AL~~ 67 (528)
++..++..|+ .+++++...|+... -.+|++..-..+.... .+.+.+ |.+||..++..
T Consensus 175 l~~~~~~~~~-~l~~~~l~~l~~~~-g~~r~l~~~l~~~~~~~~~~l~~~~~~~i~t~~~i~~~~~~ 239 (324)
T 1l8q_A 175 IKEKLKEFNL-ELRKEVIDYLLENT-KNVREIEGKIKLIKLKGFEGLERKERKERDKLMQIVEFVAN 239 (324)
T ss_dssp HHHHHHHTTC-CCCHHHHHHHHHHC-SSHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCC-CCCHHHHHHHHHhC-CCHHHHHHHHHHHHHcCHHHhccccccCCCCHHHHHHHHHH
Confidence 4555667788 69999999999877 5566644433333333 334568 89999999873
No 154
>3kfu_G Glutamyl-tRNA(Gln) amidotransferase subunit C; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus}
Probab=25.11 E-value=1.3e+02 Score=24.67 Aligned_cols=36 Identities=17% Similarity=0.230 Sum_probs=29.6
Q ss_pred CCCCChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHH
Q 009716 1 MSIVPKETIEVIAQSIGVYNLSSDVALALAPDVEYRVR 38 (528)
Q Consensus 1 Ms~~~~e~V~~iAes~Gi~~Lsdeaa~~La~dveyrlr 38 (528)
|+ +.++.|+.+|+-.-+ .++++-...++.+++..+.
T Consensus 4 M~-i~~e~V~~iA~LArL-~l~eeE~~~~~~~l~~Il~ 39 (92)
T 3kfu_G 4 ME-LSPELLRKLETLAKI-RLSPEEEALLLQDLKRILD 39 (92)
T ss_dssp -C-CCHHHHHHHHHHTTC-CCCHHHHHHHHHHHHHHHH
T ss_pred Cc-cCHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHHHH
Confidence 44 899999999999999 6999988888887765544
No 155
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=24.83 E-value=52 Score=25.05 Aligned_cols=29 Identities=21% Similarity=0.462 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHhC--------------CCccCHhhHHHHHh
Q 009716 38 REIMQEAIKCMRHAH--------------RTVLTANDVDSALN 66 (528)
Q Consensus 38 reIiqeA~kfm~hsk--------------R~~Lt~~DI~~AL~ 66 (528)
.++|+.|++|+.+-+ .|-||.++|+.||+
T Consensus 10 e~li~~Av~FL~dp~V~~sp~~~K~~FL~sKGLt~~EI~~Al~ 52 (54)
T 3ff5_A 10 EPLIATAVKFLQNSRVRQSPLATRRAFLKKKGLTDEEIDLAFQ 52 (54)
T ss_dssp HHHHHHHHHHHHCTTGGGSCHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCChhhhcCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 357888999988764 34699999999986
No 156
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=24.44 E-value=62 Score=33.62 Aligned_cols=58 Identities=10% Similarity=0.063 Sum_probs=42.0
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhCCCccCHhhHHHHHhcc
Q 009716 9 IEVIAQSIGVYNLSSDVALALAPDVEYRVREI---MQEAIKCMRHAHRTVLTANDVDSALNLR 68 (528)
Q Consensus 9 V~~iAes~Gi~~Lsdeaa~~La~dveyrlreI---iqeA~kfm~hskR~~Lt~~DI~~AL~~~ 68 (528)
++..++..|+ .++++++..||....-.+|++ ++.+..++...++ .+|.+++..||+..
T Consensus 272 L~~~~~~~~~-~i~~e~l~~la~~~~gn~R~l~~~L~~~~~~a~~~~~-~It~~~~~~~l~~~ 332 (440)
T 2z4s_A 272 ARKMLEIEHG-ELPEEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGK-EVDLKEAILLLKDF 332 (440)
T ss_dssp HHHHHHHHTC-CCCTTHHHHHHHHCCSCHHHHHHHHHHHHHHHHHSSS-CCCHHHHHHHTSTT
T ss_pred HHHHHHHcCC-CCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHH
Confidence 4455666788 599999999998876555554 5555555554454 69999999999764
No 157
>3a1y_A 50S ribosomal protein P1 (L12P); stalk, helix SPIN, ribonucleoprotein; 2.13A {Pyrococcus horikoshii}
Probab=24.43 E-value=93 Score=23.66 Aligned_cols=40 Identities=23% Similarity=0.364 Sum_probs=33.3
Q ss_pred CChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHH-HHHHHHHH
Q 009716 4 VPKETIEVIAQSIGVYNLSSDVALALAPDVEYR-VREIMQEA 44 (528)
Q Consensus 4 ~~~e~V~~iAes~Gi~~Lsdeaa~~La~dveyr-lreIiqeA 44 (528)
+..+.|+.+.+++|+ ++.++-...++..++-. +.++|.++
T Consensus 17 ~t~~~I~~il~aaGv-eve~~~~~~~~~~L~gk~i~elI~~~ 57 (58)
T 3a1y_A 17 INEENLKAVLQAAGV-EPEEARIKALVAALEGVNIDEVIEKA 57 (58)
T ss_dssp CCHHHHHHHHHHTTC-CCCHHHHHHHHHHHSSCCHHHHHHHH
T ss_pred CCHHHHHHHHHHcCC-CccHHHHHHHHHHHCCCCHHHHHHcc
Confidence 567889999999999 69999999999988744 77777554
No 158
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=24.35 E-value=76 Score=29.59 Aligned_cols=43 Identities=14% Similarity=0.160 Sum_probs=35.3
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHhCCCccCHhhHHHHHhcc
Q 009716 26 ALALAPDVEY----RVREIMQEAIKCMRHAHRTVLTANDVDSALNLR 68 (528)
Q Consensus 26 a~~La~dvey----rlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~~ 68 (528)
...+|....- .|+.++++|..++.+.+++.++.+|+..|++..
T Consensus 206 ~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~ 252 (257)
T 1lv7_A 206 AAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDKI 252 (257)
T ss_dssp HHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHH
Confidence 4556665543 688899999999999999999999999999864
No 159
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=23.90 E-value=82 Score=30.18 Aligned_cols=61 Identities=16% Similarity=0.196 Sum_probs=42.5
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhccC
Q 009716 8 TIEVIAQSIGVYNLSSDVALALAPDVE---YRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRN 69 (528)
Q Consensus 8 ~V~~iAes~Gi~~Lsdeaa~~La~dve---yrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~~n 69 (528)
.++..++..|+ .++++++..|+.... ..++++++.+..++....+..++.+|+..++...+
T Consensus 176 ~l~~~~~~~~~-~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~~~ 239 (324)
T 1hqc_A 176 GVMRDARLLGV-RITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVITRERALEALAALG 239 (324)
T ss_dssp HHHHHHHTTTC-CCCHHHHHHHHHHSCSCHHHHHHHHHHHTTTSTTTSCSCCCHHHHHHHHHHHT
T ss_pred HHHHHHHhcCC-CCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc
Confidence 34455566687 599999999988642 33555566655555555677899999999987754
No 160
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=23.71 E-value=1.1e+02 Score=29.06 Aligned_cols=58 Identities=17% Similarity=0.180 Sum_probs=41.3
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHh------------CCCccCHhhHHHHHhc
Q 009716 9 IEVIAQSIGVYNLSSDVALALAPDVE----YRVREIMQEAIKCMRHA------------HRTVLTANDVDSALNL 67 (528)
Q Consensus 9 V~~iAes~Gi~~Lsdeaa~~La~dve----yrlreIiqeA~kfm~hs------------kR~~Lt~~DI~~AL~~ 67 (528)
++.+++..|. .+++++...|+...+ ..|+.++++|...+.+. ....++.+|+..|++.
T Consensus 198 l~~~~~~~~~-~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r~~~~~~~~~~~~~~~~~i~~~d~~~a~~~ 271 (297)
T 3b9p_A 198 LNRLLQKQGS-PLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRELNVEQVKCLDISAMRAITEQDFHSSLKR 271 (297)
T ss_dssp HHHHHGGGSC-CSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTCC--------CCCCCCCCHHHHHHHTTS
T ss_pred HHHHHHhcCC-CCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhhcccccccccCCcCHHHHHHHHHH
Confidence 3455566666 588998888887655 36777888876665543 2357999999999865
No 161
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=23.36 E-value=64 Score=30.06 Aligned_cols=47 Identities=23% Similarity=0.285 Sum_probs=36.4
Q ss_pred CCCHHH-HHHHHHHHH----HHHHHHHHHHHHHHHHhCCCccCHhhHHHHHh
Q 009716 20 NLSSDV-ALALAPDVE----YRVREIMQEAIKCMRHAHRTVLTANDVDSALN 66 (528)
Q Consensus 20 ~Lsdea-a~~La~dve----yrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~ 66 (528)
.+++++ ...||...+ -.|+.++++|...+...++..+|.+|+..|++
T Consensus 203 ~~~~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~~~~~I~~~dl~~a~~ 254 (254)
T 1ixz_A 203 PLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAAS 254 (254)
T ss_dssp CBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHTC
T ss_pred CCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHhC
Confidence 344444 566776655 35889999999999888888999999999874
No 162
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=22.99 E-value=65 Score=33.72 Aligned_cols=42 Identities=19% Similarity=0.167 Sum_probs=34.9
Q ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhc
Q 009716 26 ALALAPDVE----YRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (528)
Q Consensus 26 a~~La~dve----yrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~ 67 (528)
...||+..+ -.|+.++++|..++.+.+|..+|.+|+..|++.
T Consensus 343 l~~lA~~t~G~SGADi~~l~~eA~~~Air~~~~~vt~~Df~~Al~~ 388 (405)
T 4b4t_J 343 LRKVAEKMNGCSGADVKGVCTEAGMYALRERRIHVTQEDFELAVGK 388 (405)
T ss_dssp HHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHH
Confidence 455666554 468999999999999999999999999999964
No 163
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=22.56 E-value=2.5e+02 Score=22.52 Aligned_cols=61 Identities=20% Similarity=0.233 Sum_probs=42.0
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhccCCCCccCCCCCC
Q 009716 8 TIEVIAQSIGVYNLSSDVALALAPD-----VEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNVEPIYGFASGD 80 (528)
Q Consensus 8 ~V~~iAes~Gi~~Lsdeaa~~La~d-----veyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~~nvePlyGy~s~~ 80 (528)
+|..+|+.+|++ ..-....+.+. -+|..+.-++.|.+.+..+.. .++..||-..+ ||.+..
T Consensus 20 ~~~~lA~~~~~s--~~~l~r~fk~~~G~s~~~~~~~~Rl~~A~~lL~~~~~-~~si~~IA~~~---------Gf~~~s 85 (108)
T 3mn2_A 20 TIEKLTALTGIS--SRGIFKAFQRSRGYSPMAFAKRVRLQHAHNLLSDGAT-PTTVTAAALSC---------GFSNLG 85 (108)
T ss_dssp CHHHHHHHHTCC--HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHSSSS-CCCHHHHHHHT---------TCCCHH
T ss_pred CHHHHHHHHCCC--HHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHcCCC-CCCHHHHHHHh---------CCCCHH
Confidence 578889999884 22333333333 367777778889999888754 58888887776 887643
No 164
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=22.34 E-value=6.1e+02 Score=29.56 Aligned_cols=168 Identities=13% Similarity=0.172 Sum_probs=96.9
Q ss_pred HHHHHHHHHhhcCCChHHHHHHHHHhhhcCCc-cccchhhHHHHHHHHhhhc-CCHHHHHHHHHHHHHhhcCCCcccccc
Q 009716 174 LYFDKIRELTVSRSNSTVFKQALLSLAMDSGL-HPLVPYFTYFISEEVTRSL-KNFSLLFALMRVARSLLRNPHIHIEPY 251 (528)
Q Consensus 174 ~Yf~kIt~a~l~~~~~~~r~~AL~sL~tD~gL-~qLLPYfv~FI~e~V~~nl-~nl~~L~~llrmv~ALl~Np~L~LepY 251 (528)
..++.+.+++-...+.+.--.++..|.+..+. ++.=|||+.++..-+...- ++-..-..--..+.||+.+=+- + -
T Consensus 54 ~~~~~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~--~-a 130 (986)
T 2iw3_A 54 HFFGELAKGIKDKKTAANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNP--V-A 130 (986)
T ss_dssp HHHHHHHHHHTSHHHHHHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCG--G-G
T ss_pred hHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCH--H-H
Confidence 46777777764322221111355677755554 5667999877665554433 2333333444566777765332 1 2
Q ss_pred hhhhHHHHHHHHhccccCCCCCCCchHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHH
Q 009716 252 LHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLA 331 (528)
Q Consensus 252 LHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~kf~~~y~~L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~ 331 (528)
+..++|.+++++-. ...|.-+.-|-.++..+++.-......--|.|+=.+..++.|.++.... -|..++.
T Consensus 131 ~~~~~~~~~~~~~~--------~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~--~~~~~~~ 200 (986)
T 2iw3_A 131 IKALLPHLTNAIVE--------TNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWDTKKEVKA--AATAAMT 200 (986)
T ss_dssp HHHHHHHHHHHHHH--------CCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHH--HHHHHHH
T ss_pred HHHHHHHHHHHhcc--------ccchHHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhhcccCcHHHHH--HHHHHHH
Confidence 48899999999833 2369999999999999998654333344455666777777776654433 2233333
Q ss_pred hhChhhhhhhcccchHHHHHhhh
Q 009716 332 ALGPSVVHLLILPNLELYLKFLE 354 (528)
Q Consensus 332 aLG~~aVr~lilP~L~~y~~~Le 354 (528)
++..-.-..=|-|+++.+.+.|.
T Consensus 201 ~~~~~~~n~d~~~~~~~~~~~~~ 223 (986)
T 2iw3_A 201 KATETVDNKDIERFIPSLIQCIA 223 (986)
T ss_dssp HHGGGCCCTTTGGGHHHHHHHHH
T ss_pred HHHhcCCCcchhhhHHHHHHHhc
Confidence 33222222334456666665553
No 165
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=22.21 E-value=69 Score=33.96 Aligned_cols=42 Identities=19% Similarity=0.132 Sum_probs=34.4
Q ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhc
Q 009716 26 ALALAPDVE----YRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (528)
Q Consensus 26 a~~La~dve----yrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~ 67 (528)
...||...+ -.|+.++++|..++.+.+|..+|.+|+..|++.
T Consensus 377 l~~LA~~T~GfSGADI~~l~~eA~~~Air~~~~~It~eDf~~Al~r 422 (437)
T 4b4t_I 377 LETLVTTKDDLSGADIQAMCTEAGLLALRERRMQVTAEDFKQAKER 422 (437)
T ss_dssp HHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHH
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Confidence 445665443 468999999999999999999999999999863
No 166
>3bl2_A V-BCL-2; protein-protein complex, viral BCL-2, apoptosis, autophagy, antiviral defense, coiled coil, cytoplasm, golgi apparatus, membrane; 2.30A {Murid herpesvirus 4} SCOP: f.1.4.1 PDB: 3dvu_A 2abo_A
Probab=22.05 E-value=1.2e+02 Score=26.31 Aligned_cols=43 Identities=21% Similarity=0.390 Sum_probs=34.3
Q ss_pred hhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhChhhhhhhcccch
Q 009716 299 QNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLILPNL 346 (528)
Q Consensus 299 ~~L~~RI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~~aVr~lilP~L 346 (528)
.+-+..|++.+...|.|-- ..|-++|+.+.|..+.+.+++|--
T Consensus 61 ~nW~~~l~~Lf~slf~D~I-----N~GR~vGfFdVGryVCeElL~~~s 103 (131)
T 3bl2_A 61 KNWKRDLSKLFTSLFVDVI-----NSGRIVGFFDVGRYVCEEVLCPGS 103 (131)
T ss_dssp GGHHHHHHHHHHHHTSSCC-----CHHHHHHHHHHHHHHHHTTSCTTC
T ss_pred HHHHhhHHHHHHHHHHHHh-----cccCeEeeeehHHHHHHHHhCCCc
Confidence 4556678888887777643 369999999999999999999853
No 167
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=21.73 E-value=72 Score=30.33 Aligned_cols=47 Identities=23% Similarity=0.285 Sum_probs=36.0
Q ss_pred CCCHHH-HHHHHHHHH----HHHHHHHHHHHHHHHHhCCCccCHhhHHHHHh
Q 009716 20 NLSSDV-ALALAPDVE----YRVREIMQEAIKCMRHAHRTVLTANDVDSALN 66 (528)
Q Consensus 20 ~Lsdea-a~~La~dve----yrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~ 66 (528)
.+++++ ...||...+ -.|+.++++|..++...++..+|.+|+..|++
T Consensus 227 ~~~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~I~~~dl~~a~~ 278 (278)
T 1iy2_A 227 PLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAAS 278 (278)
T ss_dssp CBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCCSBCHHHHHHHTC
T ss_pred CCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHhC
Confidence 345444 556776554 35888999999999888888999999999874
No 168
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=20.96 E-value=84 Score=29.85 Aligned_cols=54 Identities=17% Similarity=0.121 Sum_probs=38.7
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHH
Q 009716 9 IEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSAL 65 (528)
Q Consensus 9 V~~iAes~Gi~~Lsdeaa~~La~dveyrlreIiqeA~kfm~hskR~~Lt~~DI~~AL 65 (528)
++.+++..|+ .++++++..|++...-.+|++++..-+..... ..+|.+||..++
T Consensus 178 l~~~~~~~~~-~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~--~~i~~~~v~~~~ 231 (327)
T 1iqp_A 178 LRYIAENEGL-ELTEEGLQAILYIAEGDMRRAINILQAAAALD--KKITDENVFMVA 231 (327)
T ss_dssp HHHHHHTTTC-EECHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--SEECHHHHHHHT
T ss_pred HHHHHHhcCC-CCCHHHHHHHHHHCCCCHHHHHHHHHHHHhcC--CCCCHHHHHHHH
Confidence 4445556688 59999999999988777777776655544332 378888887765
No 169
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=20.88 E-value=50 Score=26.47 Aligned_cols=32 Identities=19% Similarity=0.407 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHhC--------------CCccCHhhHHHHHhccCC
Q 009716 39 EIMQEAIKCMRHAH--------------RTVLTANDVDSALNLRNV 70 (528)
Q Consensus 39 eIiqeA~kfm~hsk--------------R~~Lt~~DI~~AL~~~nv 70 (528)
++|+.|++|+++-+ .|-||.++|+.||+.-+.
T Consensus 16 ~li~~Av~FLqdp~V~~sp~~~K~~FL~sKGLt~eEI~~Al~ra~~ 61 (70)
T 2w84_A 16 PLIATAVKFLQNSRVRQSPLATRRAFLKKKGLTDEEIDMAFQQSGT 61 (70)
T ss_dssp HHHHHHHHHHCSTTGGGSCHHHHHHHHHHTTCCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhCChhhhhCCHHHHHHHHHHcCCCHHHHHHHHHHccC
Confidence 57788888887754 356999999999988543
No 170
>4fqn_A Malcavernin; helical domain, harmonin-homology domain, protein-protein interaction, HOMO-dimer, protein binding; 1.90A {Homo sapiens}
Probab=20.59 E-value=45 Score=28.34 Aligned_cols=62 Identities=21% Similarity=0.322 Sum_probs=47.2
Q ss_pred chhhhhhhh-hhhhhccccchhhHHHHHHHHhhhccCccchhHHHHHHhcc-------ccccccCCcccc
Q 009716 464 SMLRHLQNE-KMLRREVSNQALKTSTVLAQAWKEDAEGGHLLASLYELFGE-------SMFSFTRKSELY 525 (528)
Q Consensus 464 ~~~~~~~~~-~~~~~~~~~~~~~~s~~l~q~wk~d~~~g~ll~sl~elfge-------~~l~f~p~~e~~ 525 (528)
++++++... ..-+.+-++.-+.-=|.|=+-|+..++.-+.-..|.||||+ +|=||||..-+-
T Consensus 13 ~a~e~lqdYM~~L~~~L~~~ElqqFA~Llr~YR~G~~I~~Fc~kLl~LyG~~Rk~LL~gmRpFIp~~Di~ 82 (98)
T 4fqn_A 13 SATELLQDYMLTLRTKLSSQEIQQFAALLHEYRNGASIHEFCINLRQLYGDSRKFLLLGLRPFIPEKDSQ 82 (98)
T ss_dssp HHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHCGGGGGGGGGGGGGSCHHHHH
T ss_pred hHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhchHHHHHHhhccCCCChhhHH
Confidence 444555554 44555666667777788889999999999999999999998 488999976543
No 171
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=20.05 E-value=81 Score=33.24 Aligned_cols=42 Identities=17% Similarity=0.067 Sum_probs=34.1
Q ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhc
Q 009716 26 ALALAPDVE----YRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (528)
Q Consensus 26 a~~La~dve----yrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~ 67 (528)
...||...+ -.|+.++++|..++.+.+|..++.+|+..|++.
T Consensus 376 l~~lA~~t~G~sGADi~~l~~eA~~~air~~~~~i~~~d~~~Al~~ 421 (437)
T 4b4t_L 376 FEAAVKMSDGFNGADIRNCATEAGFFAIRDDRDHINPDDLMKAVRK 421 (437)
T ss_dssp HHHHHHTCCSCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 344555443 468899999999999999999999999999974
No 172
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=20.03 E-value=82 Score=33.67 Aligned_cols=41 Identities=22% Similarity=0.139 Sum_probs=33.9
Q ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHhCCCccCHhhHHHHHhc
Q 009716 27 LALAPDVE----YRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (528)
Q Consensus 27 ~~La~dve----yrlreIiqeA~kfm~hskR~~Lt~~DI~~AL~~ 67 (528)
..||+..+ -.|+.++++|..++.+.+|+.+|.+|+..|++.
T Consensus 405 ~~LA~~T~GfSGADI~~l~~eAa~~Air~~~~~it~~Df~~Al~k 449 (467)
T 4b4t_H 405 ELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDK 449 (467)
T ss_dssp HHHHHHCCSCCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Confidence 44555444 468999999999999999999999999999964
Done!