BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009717
(527 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q921L5|COG2_MOUSE Conserved oligomeric Golgi complex subunit 2 OS=Mus musculus
GN=Cog2 PE=2 SV=2
Length = 731
Score = 206 bits (524), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 148/538 (27%), Positives = 260/538 (48%), Gaps = 42/538 (7%)
Query: 4 RIKSASLLLDASLGHCFVHGLEHQNANVIYNCLRAYAAIDNTRNAEEIFCNTVVAPLMQK 63
RI + +L SL + GL+ + +++ +CLR YA ID T++AE + +V P + +
Sbjct: 199 RIAGITAMLQQSLEGLLLEGLQTSDVDIVRHCLRTYATIDKTQDAEALVGQVLVKPYVNE 258
Query: 64 IIPHGPSEALAGASGDELESDYEQIKQCVEKDCKFLLDI-----SSAENSGLHVFDFLAN 118
+I E + L+ Y ++ + V C+ L ++ SS + + + +DFL N
Sbjct: 259 VI----VEQFVESHPSSLQLMYNKLLEFVPHHCRLLREVTGGAVSSEKGTIVPGYDFLVN 314
Query: 119 SILKEVLSAIQKGKPGAFSPGRPTQFLRNYKSSLDFLAYLEGYCPSRSAVAKFRAEAIYV 178
S+ E++ +++ P F+PG P F + Y S+DF+ E C S+++V + RA Y
Sbjct: 315 SVWPEIVRGLEEKLPSLFNPGDPDAFHQKYTVSMDFVQRFERQCGSQASVKRLRAHPAYH 374
Query: 179 EFMKQWNVGVYFSLRFQEIAGALDSALTAASLAPVQNSNSNQGNSQALTLKQSVTLLDSM 238
F +WN+ VYF +RF+E+AG+L++ALT ++ G+ L + S+
Sbjct: 375 NFSNKWNLPVYFQIRFREVAGSLEAALTDGL------EDAPAGSPYCLLASHRTWI--SL 426
Query: 239 KSCWRQDVFLLPCSDKFLRLSLQLLSRYSNWLSSGLAARSSGHASFNPGNEWAISAAPDD 298
CW ++FL + + RL+LQ+L+R+S ++S S ++ S P +
Sbjct: 427 GKCWSDEMFLPLLAHRLWRLTLQILARFSVFVSELSVRPVSNESAKETKKPLTGSKDPSE 486
Query: 299 ------------------FIYIIHDINCLATEVSGDYLTHVLQLLSSCSSEVLDLVKQSI 340
+Y++ D+ L E D L V Q L + + ++
Sbjct: 487 DQGSHASEASAASISSTQLVYVVSDLGRL-QEWLPDLLETVKQKLEMIGFKNFSSISAAL 545
Query: 341 LEGGKSLSSMLPVVINTIVDALVEKAVEDLRQLKGITATYRMTNKPLPVRHSPYVSGVLR 400
+ +LS+ +P + + IV L E L+ + YR TNK +P S YV L+
Sbjct: 546 EDSQSALSAHVPALSSRIVQDLSESCFSYLKSALEVPRLYRRTNKEVPSTASSYVDSALK 605
Query: 401 PLKTLLEGERAMTYLTPEAKNELLLDAATQITSRYHELAAELISVARKTESSLLKIRQGA 460
PL L G + P L +A + T RY E +++++ +K E SL +++Q
Sbjct: 606 PLYQLQSGHG--DKVQPAVMQSWLQEALSDSTHRYFETVSDVLNSVKKMEESLKRLKQA- 662
Query: 461 QRRAGASSDVSDH--NVSDTDKICMQLFLDIQEYGRSLAALGVQAADIPPYRSLWQCV 516
RR+ A++ VS +SD DKI +QL LD++ G + +G+Q +DI + +L + V
Sbjct: 663 -RRSPATNPVSSSGGGMSDDDKIRLQLALDVEHLGEQIQRMGLQTSDIKSFPALMELV 719
>sp|Q14746|COG2_HUMAN Conserved oligomeric Golgi complex subunit 2 OS=Homo sapiens
GN=COG2 PE=1 SV=1
Length = 738
Score = 204 bits (519), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 152/553 (27%), Positives = 269/553 (48%), Gaps = 51/553 (9%)
Query: 4 RIKSASLLLDASLGHCFVHGLEHQNANVIYNCLRAYAAIDNTRNAEEIFCNTVVAPLMQK 63
RI + +L SL + GL+ + ++I +CLR YA ID TR+AE + +V P + +
Sbjct: 199 RIAGITAMLQQSLEGLLLEGLQTSDVDIIRHCLRTYATIDKTRDAEALVGQVLVKPYIDE 258
Query: 64 IIPHGPSEALAGASGDELESDYEQIKQCVEKDCKFLLD-----ISSAENSGLHVFDFLAN 118
+I E + + L+ Y ++ + V C+ L + ISS + + + +DFL N
Sbjct: 259 VI----IEQFVESHPNGLQVMYNKLLEFVPHHCRLLREVTGGAISSEKGNTVPGYDFLVN 314
Query: 119 SILKEVLSAIQKGKPGAFSPGRPTQFLRNYKSSLDFLAYLEGYCPSRSAVAKFRAEAIYV 178
S+ +++ +++ P F+PG P F Y S+DF+ LE C S+++V + RA Y
Sbjct: 315 SVWPQIVQGLEEKLPSLFNPGNPDAFHEKYTISMDFVRRLERQCGSQASVKRLRAHPAYH 374
Query: 179 EFMKQWNVGVYFSLRFQEIAGALDSALT-AASLAPVQNSNSNQGNSQALTLKQSVTLLDS 237
F K+WN+ VYF +RF+EIAG+L++ALT AP ++ L S S
Sbjct: 375 SFNKKWNLPVYFQIRFREIAGSLEAALTDVLEDAPAES---------PYCLLASHRTWSS 425
Query: 238 MKSCWRQDVFLLPCSDKFLRLSLQLLSRYSNWLSSGLAAR----------------SSGH 281
++ CW ++FL + RL+LQ+L+RYS +++ L+ R S
Sbjct: 426 LRRCWSDEMFLPLLVHRLWRLTLQILARYSVFVNE-LSLRPISNESPKEIKKPLVTGSKE 484
Query: 282 ASFNPGNEWAISAAPDD-----------FIYIIHDINCLATEVSGDYLTHVLQLLSSCSS 330
S GN + P + +Y++ D++ L ++ + L + L
Sbjct: 485 PSITQGNTEDQGSGPSETKPVVSISRTQLVYVVADLDKLQEQLP-ELLEIIKPKLEMIGF 543
Query: 331 EVLDLVKQSILEGGKSLSSMLPVVINTIVDALVEKAVEDLRQLKGITATYRMTNKPLPVR 390
+ + ++ + S S+ +P + + I+ L + L+ + YR TNK +P
Sbjct: 544 KNFSSISAALEDSQSSFSACVPSLSSKIIQDLSDSCFGFLKSALEVPRLYRRTNKEVPTT 603
Query: 391 HSPYVSGVLRPLKTLLEGERAMTYLTPEAKNELLLDAATQITSRYHELAAELISVARKTE 450
S YV L+PL L G + L + L ++ T +Y+E +++++ +K E
Sbjct: 604 ASSYVDSALKPLFQLQSGHK--DKLKQAIIQQWLEGTLSESTHKYYETVSDVLNSVKKME 661
Query: 451 SSLLKIRQGAQRRAGASSDVSDHNVSDTDKICMQLFLDIQEYGRSLAALGVQAADIPPYR 510
SL +++Q A++ A+ +SD DKI +QL LD++ G + LG+QA+DI +
Sbjct: 662 ESLKRLKQ-ARKTTPANPVGPSGGMSDDDKIRLQLALDVEYLGEQIQKLGLQASDIKSFS 720
Query: 511 SLWQCVAPSDRQS 523
+L + VA + Q+
Sbjct: 721 ALAELVAAAKDQA 733
>sp|Q54UC2|COG2_DICDI Conserved oligomeric Golgi complex subunit 2 OS=Dictyostelium
discoideum GN=cog2 PE=3 SV=1
Length = 904
Score = 165 bits (418), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 118/458 (25%), Positives = 216/458 (47%), Gaps = 59/458 (12%)
Query: 115 FLANSILKEVLSAIQKGKPGAFSPGRPTQFLRNYKSSLDFLAYLE-GYCPSRSAVAKFRA 173
F++ S+L E+ ++ K F+ G P F +NY + +F+ +E + ++ + +FR
Sbjct: 442 FISQSVLPEIDESLGFFK-QIFATGIPDLFYKNYYLTFNFIQSIEVNFLTNKELLTQFRQ 500
Query: 174 EAIYVEFMKQWNVGVYFSLRFQEIAGALD---------SALTAASLAPVQNSNSNQGNSQ 224
+ Y K+WN VYF L F IA + LT + N+N+N N+
Sbjct: 501 SSSYSSLWKKWNFAVYFQLCFTNIAQHFEFNYLRIPLFDQLTLPTNNITNNNNNNNENNN 560
Query: 225 ALTLKQSVTLLDSMKSCWRQDVFLLPCSDKFLRLSLQLLSRYSNWLSSGL---------- 274
LK + L SM CW F+ S KF +L LQL++RY ++S L
Sbjct: 561 EFYLKSTDGLRLSMDKCWSNSNFIFDLSSKFFKLFLQLIARYDTFISDTLIPLELELQQQ 620
Query: 275 ----------------------AARSSGHASFNPGNEWAISAA---------PDDFIYII 303
+ + + + N+ IS++ P++FIYII
Sbjct: 621 LQQQQLQQQQQQQQQQQNIGDSVIKITPKSPPSLSNQSPISSSTTLNNKQSSPENFIYII 680
Query: 304 HDINCLATEVSGDYLTHVLQLLSSCSS--EVLDLVKQSILEGGKSLSSMLPVVINTIVDA 361
DI + +++S +Y +++ + + + E+L+L+ ILE K+L ++P + I +
Sbjct: 681 SDIYKIKSKISTNYKELIIKTIGNHQNQHEILNLINDGILESCKTLEQLIPRISIIIENH 740
Query: 362 LVEKAVEDLRQLKGITATYRMTNKPLPVRHSPYVSGVLRPLKTLLEGE-RAMTYLTPEAK 420
L+ K +E + + + +TYRMTNKP+P + S YVS ++ PL+ L+ + ++ ++ PE K
Sbjct: 741 LISKCLEPIEIISTLRSTYRMTNKPVPTKPSIYVSNLISPLEILINNKASSLHFIPPEIK 800
Query: 421 NELLLDAATQITSRYHELAAELISVARKTESSLLKIRQGAQRRAGASSDVSDHNVSDTDK 480
+ T +T + A LI ++ + K+ +++ ++ S ++SD DK
Sbjct: 801 LNWAISVLTPVTESFKNAATNLIQSVTQSNDIINKMV----KKSKPTTTTSGGDMSDMDK 856
Query: 481 ICMQLFLDIQEYGRSLAALGVQAADIPPYRSLWQCVAP 518
I +QL+LD+ ++G + G+ P+ L V P
Sbjct: 857 ISLQLYLDVDKFGLYIQKFGINLLTFEPFLGLKSIVEP 894
>sp|Q9VF78|COG2_DROME Conserved oligomeric Golgi complex subunit 2 OS=Drosophila
melanogaster GN=ldlCp PE=2 SV=1
Length = 710
Score = 157 bits (396), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 140/500 (28%), Positives = 226/500 (45%), Gaps = 43/500 (8%)
Query: 35 CLRAYAAIDNTRNAEEIFCNTVVAPLMQKIIPHGPSEALAGASGDELESDYEQIKQCVEK 94
CLR Y ++ AE F VVAP M +I G + G L Y +I +
Sbjct: 231 CLRIYITLNACDQAECAFREDVVAPYMTGVI--GEQQLQNSPQG--LAGIYSKILNFISL 286
Query: 95 DCKFLLDIS--SAENSGLHVFDFLANSILKEVLSAIQKGKPGAFSPGRPTQFLRNYKSSL 152
LL ++ S + G F+F+ NS +V + ++ F+PG F YK +
Sbjct: 287 HMTDLLRLTLYSDKFPG---FNFVVNSYWSDVETRLELHMNSIFAPGNSEVFYVKYKCTR 343
Query: 153 DFLAYLEGY--CPSRSAVAKFRAEAIYVEFMKQWNVGVYFSLRFQEIAGALDSALTAASL 210
DFL +E C AV +R F +WN+ VYF + FQEIAG + A L
Sbjct: 344 DFLGKIEELLTCSGEQAVTFYRQHKQTKSFEARWNLPVYFQICFQEIAGKFE-----AQL 398
Query: 211 APVQNSNSNQGNSQALTLKQSV--TLLDSMKSCWRQDVFLLPCSDKFLRLSLQLLSRYSN 268
PV +S + N K S ++M CW + V+L KF +L++Q++ R S
Sbjct: 399 EPVLQEDSLKDNLTDSDYKISAFNAAKEAMTRCWAEGVYLPEVFPKFYKLNVQVVLRLSR 458
Query: 269 WLSSGLAARSSGHASFNPGNEWAISAAPDDFIYIIH-DINCLATEVSGDYLTHVLQLL-- 325
W++ + + G+ ++ + + +H DI L +L + QL+
Sbjct: 459 WITDAITQ--------SKGSNFSKPYTRNQLLIALHADIRKLDA-----HLPELQQLIIK 505
Query: 326 ----SSCSSEVLDLVKQSILEGGKSLSSMLPVVINTIVDALV-EKAVEDLRQLKGITATY 380
C+ D++ +S+ +L + L + T+V+ L+ E E++RQ+ + Y
Sbjct: 506 SVPVEQCTKIFSDVLAKSMSCLADTLGAHLTNIQKTLVELLIGECETENVRQVNDLPRLY 565
Query: 381 RMTNKPLPVRHSPYVSGVLRPLKTLLE-GERAMTYLTPEAKNELLLDAATQITSRYHELA 439
R TN+ +P R S YV +LRPLK + E + L E ++L + A+ IT Y +
Sbjct: 566 RKTNREVPTRCSSYVEQMLRPLKAFAQQNESQLGTLVVE---QILAEVASHITKAYFNVV 622
Query: 440 AELISVARKTESSLLKIRQGAQRRAGASSDVSDHNVSDTDKICMQLFLDIQEYGRSLAAL 499
+++++ +KTE SL ++R A S S +SD DKI +QL +D+ + + L L
Sbjct: 623 SDVLTSVQKTEESLRRLRNVKSGGAATVSTGSSAVMSDDDKIRVQLRVDVTSWRQELCKL 682
Query: 500 GVQAADIPPYRSLWQCVAPS 519
QA I L V S
Sbjct: 683 NFQATQIDKLVELTNMVEDS 702
>sp|Q21444|COG2_CAEEL Conserved oligomeric Golgi complex subunit 2 OS=Caenorhabditis
elegans GN=cogc-2 PE=2 SV=1
Length = 681
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 77/393 (19%), Positives = 152/393 (38%), Gaps = 35/393 (8%)
Query: 115 FLANSILKEVLSAIQKGKPGAFSPGRPTQFLRNYKSSLDFLAYLEGYCPSRSAVAKFRAE 174
FL ++L +L+ I K P F + + +F+ R+ + R
Sbjct: 292 FLDETLLTFILTFIDKCMGAVAVPSDTRLFHECFLLTQEFIDNWPSSHTCRAMLKSIR-- 349
Query: 175 AIYVEFMKQWNVGVYFSLRFQEIAGALDSALTAASLAPVQNSNSNQGNSQALTLKQSVTL 234
++N+ VYF L D ++ A + S N+ N+ L S +
Sbjct: 350 -------DKFNLLVYFKLETHRFGKQCDQLMSPEMFAEPETS-ENRENTPQLHCGVSRAI 401
Query: 235 LDSMKSCWRQDVFLLPCSDKFLRLSLQLLSRYSNWLSSGLAARSSGHASFNPGNEWAISA 294
+ +++ W DV+L P DK +L+LL ++ +W +++ + +W
Sbjct: 402 ITAIEHVWSDDVYLPPIVDKLWDFTLKLLLKHFSW------SQTMKNYFMEEKRDWT--- 452
Query: 295 APDDFIYIIHDINCLATEVSGDYLTHVLQLLSSCSSEVLDLVKQSILEGGKSLSSMLPVV 354
+ + D L V L + + + Q + + G+S+ S+ +
Sbjct: 453 ---SMVTLRSDTGNLHQLVFDFALESIWGKFHDITVDTAPF-GQCLTKHGRSIDSLCVQI 508
Query: 355 INTIVDALVEKAVEDLRQLKGITATYRMTNKPLPVRHSPYVSGVLRPLKTLLEGERAMTY 414
++I++ E +++ Q+ + YR T K P HS YV + ++ L E +
Sbjct: 509 DDSIIEMFSEVLHQEIAQVSDVPKQYRWTKKSPPTTHSKYVVTAIEMVENLKEKLCCEEH 568
Query: 415 -LTPEAKNELLLDAATQITSRYHELAAELISVARKTESSLLKIRQGAQRRAGASSDVSDH 473
T E ++ L A + E++ T SSL + ++ +G++
Sbjct: 569 PHTDEIVRKVNLSAFNYFVGK----GNEVLDSVEATGSSLSRFKRKTTTDSGST------ 618
Query: 474 NVSDTDKICMQLFLDIQEYGRSLAALGVQAADI 506
V+D DKI Q++ D + + L AD+
Sbjct: 619 -VTDDDKIKQQIYHDAKYFLSYAENLVFSQADL 650
>sp|Q11HU6|PYRG_MESSB CTP synthase OS=Mesorhizobium sp. (strain BNC1) GN=pyrG PE=3 SV=2
Length = 542
Score = 34.7 bits (78), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Query: 307 NCLATEVSGDYLTHVLQLLSSCSSEVLDLVKQSILEGGKSLSSMLPVVINTIVDALVEKA 366
N + E GDYL +Q++ V D +KQ +LEG + +L + T+ D
Sbjct: 97 NIIEKERRGDYLGATVQVIP----HVTDEIKQFVLEGNEEFDFVLCEIGGTVGDIEAMPF 152
Query: 367 VEDLRQL 373
+E +RQL
Sbjct: 153 LEAIRQL 159
>sp|A4IJP9|ROCA_GEOTN 1-pyrroline-5-carboxylate dehydrogenase OS=Geobacillus
thermodenitrificans (strain NG80-2) GN=rocA PE=3 SV=1
Length = 515
Score = 34.7 bits (78), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%)
Query: 400 RPLKTLLEGERAMTYLTPEAKNELLLDAATQITSRYHELAAELISVARK 448
R +KT E R + +PEA+ ++L AA + R HE +A L+ A K
Sbjct: 77 RAMKTADEAFRTWSRTSPEARADILFRAAAIVRRRKHEFSAWLVKEAGK 125
>sp|Q5L3K8|ROCA_GEOKA 1-pyrroline-5-carboxylate dehydrogenase OS=Geobacillus kaustophilus
(strain HTA426) GN=rocA PE=3 SV=1
Length = 515
Score = 34.7 bits (78), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%)
Query: 400 RPLKTLLEGERAMTYLTPEAKNELLLDAATQITSRYHELAAELISVARK 448
R +KT E R + +PEA+ ++L AA + R HE +A L+ A K
Sbjct: 77 RAMKTADEAFRTWSRTSPEARADILFRAAAIVRRRKHEFSAWLVKEAGK 125
>sp|Q57886|RIO1_METJA RIO-type serine/threonine-protein kinase Rio1 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=rio1 PE=3 SV=1
Length = 290
Score = 34.7 bits (78), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
Query: 76 ASGDELESDYEQIKQCVEKDCKFLLDISSA-----ENSGLHVFDFLANSILKEVLSAIQK 130
+ +E + D E K+ +EK+ KFL D+ +A + + + +F LA L E + +
Sbjct: 25 SEKEEFQLDREYQKEILEKERKFLEDLKTANEVFDKRTLMTLFSLLAGKHLTEYIGIVNS 84
Query: 131 GKPGAFSPGRPTQFLRNYK 149
GK R +F R K
Sbjct: 85 GKEAVVFKARKGKFYRAVK 103
>sp|B0BS41|PYRG_ACTPJ CTP synthase OS=Actinobacillus pleuropneumoniae serotype 3 (strain
JL03) GN=pyrG PE=3 SV=1
Length = 545
Score = 34.3 bits (77), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 308 CLATEVSGDYLTHVLQLLSSCSSEVLDLVKQSILEGGKSLSSMLPVVINTIVDALVEKAV 367
L E GDYL +Q++ ++E+ K+ ++EGGK ++ V T+ D +
Sbjct: 99 VLRKERRGDYLGATIQVIPHITNEI----KERVIEGGKGRDVVIVEVGGTVGDIESLPFL 154
Query: 368 EDLRQL 373
E LRQL
Sbjct: 155 EALRQL 160
>sp|B3GZX8|PYRG_ACTP7 CTP synthase OS=Actinobacillus pleuropneumoniae serotype 7 (strain
AP76) GN=pyrG PE=3 SV=1
Length = 545
Score = 34.3 bits (77), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 308 CLATEVSGDYLTHVLQLLSSCSSEVLDLVKQSILEGGKSLSSMLPVVINTIVDALVEKAV 367
L E GDYL +Q++ ++E+ K+ ++EGGK ++ V T+ D +
Sbjct: 99 VLRKERRGDYLGATIQVIPHITNEI----KERVIEGGKGRDVVIVEVGGTVGDIESLPFL 154
Query: 368 EDLRQL 373
E LRQL
Sbjct: 155 EALRQL 160
>sp|A3MYK8|PYRG_ACTP2 CTP synthase OS=Actinobacillus pleuropneumoniae serotype 5b (strain
L20) GN=pyrG PE=3 SV=1
Length = 545
Score = 33.9 bits (76), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 308 CLATEVSGDYLTHVLQLLSSCSSEVLDLVKQSILEGGKSLSSMLPVVINTIVDALVEKAV 367
L E GDYL +Q++ ++E+ K+ ++EGGK ++ V T+ D +
Sbjct: 99 VLRKERRGDYLGATIQVIPHITNEI----KERVIEGGKGRDVVIVEVGGTVGDIESLPFL 154
Query: 368 EDLRQL 373
E LRQL
Sbjct: 155 EALRQL 160
>sp|Q5WEQ4|SYV_BACSK Valine--tRNA ligase OS=Bacillus clausii (strain KSM-K16) GN=valS
PE=3 SV=1
Length = 880
Score = 32.3 bits (72), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 60/134 (44%), Gaps = 11/134 (8%)
Query: 307 NCLATEVSGDYLTHVL----QLLSSCSSEVLDLVKQSILEGGKSLS-SMLPVVINTIVDA 361
N A + + L HVL ++L + + + Q + G+S++ + PV ++V
Sbjct: 662 NEQAKQATRSVLAHVLDQTMRMLHPFMPFITEEIWQHLPHEGESITVANWPVYDQSLV-- 719
Query: 362 LVEKAVEDLRQLKGITATYRMTNKPLPVRHSPYVSGVLRPLKTLLEG--ERAMTYLTPEA 419
E+AVED+ LK + R T L V S + +RP + +R + Y+ A
Sbjct: 720 -FEEAVEDMEALKSLIHAIRTTRSELNVPMSKQIELKIRPQDEQMAARLQRGVAYIEKFA 778
Query: 420 KNELLLDAATQITS 433
N LLD A + +
Sbjct: 779 -NPSLLDIAVDLAT 791
>sp|A0L4Y7|RIMM_MAGSM Ribosome maturation factor RimM OS=Magnetococcus sp. (strain MC-1)
GN=rimM PE=3 SV=1
Length = 177
Score = 32.3 bits (72), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 16/71 (22%), Positives = 39/71 (54%), Gaps = 6/71 (8%)
Query: 306 INCLATEVSGDYLTHVLQLLSSCSSEVLDLVKQSILEGGKSLSSMLPVVINTIVDALVEK 365
I C EV G L V++++++ +++VL I+ GG +LP + +V+ +++
Sbjct: 113 IGCQVVEVDGTELGRVVEMMATGANDVL------IVRGGPEGEKLLPYIEEVVVELDLDR 166
Query: 366 AVEDLRQLKGI 376
+ ++ ++G+
Sbjct: 167 QIIKVKLMEGM 177
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.132 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 177,311,813
Number of Sequences: 539616
Number of extensions: 6829412
Number of successful extensions: 19118
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 19091
Number of HSP's gapped (non-prelim): 24
length of query: 527
length of database: 191,569,459
effective HSP length: 122
effective length of query: 405
effective length of database: 125,736,307
effective search space: 50923204335
effective search space used: 50923204335
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)