Query 009717
Match_columns 527
No_of_seqs 129 out of 160
Neff 6.9
Searched_HMMs 46136
Date Thu Mar 28 16:29:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009717.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009717hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2307 Low density lipoprotei 100.0 8E-128 2E-132 995.0 43.0 507 1-525 193-702 (705)
2 PF12022 DUF3510: Domain of un 100.0 2.1E-41 4.5E-46 302.6 12.6 125 359-489 1-125 (125)
3 PF10191 COG7: Golgi complex c 98.7 1.6E-05 3.5E-10 91.5 30.5 151 3-164 174-335 (766)
4 PF10474 DUF2451: Protein of u 97.6 0.0037 8.1E-08 62.1 16.7 126 340-499 40-169 (234)
5 PF04091 Sec15: Exocyst comple 96.2 0.14 3.1E-06 53.0 15.1 180 295-517 91-275 (311)
6 PF07393 Sec10: Exocyst comple 94.8 10 0.00022 43.9 39.6 456 2-515 101-664 (710)
7 KOG2033 Low density lipoprotei 90.3 1.5 3.1E-05 49.3 9.4 80 386-497 638-717 (863)
8 PF06248 Zw10: Centromere/kine 90.0 6.3 0.00014 44.5 14.7 194 2-205 156-395 (593)
9 PF14923 CCDC142: Coiled-coil 87.6 8.5 0.00018 41.9 12.8 83 353-438 231-319 (450)
10 PF06046 Sec6: Exocyst complex 77.0 35 0.00075 38.2 13.2 162 296-500 315-476 (566)
11 PF04437 RINT1_TIP1: RINT-1 / 74.0 1.5E+02 0.0032 32.8 21.9 360 54-437 4-397 (494)
12 smart00762 Cog4 COG4 transport 69.4 23 0.00049 37.0 8.7 53 5-57 1-53 (324)
13 PF08318 COG4: COG4 transport 65.8 35 0.00075 35.7 9.3 55 5-59 1-55 (331)
14 PLN03242 diacylglycerol o-acyl 40.8 30 0.00065 37.3 3.9 31 163-193 289-319 (410)
15 PF10475 DUF2450: Protein of u 39.5 1.2E+02 0.0026 31.0 8.0 59 2-60 170-228 (291)
16 PLN02401 diacylglycerol o-acyl 39.0 34 0.00073 37.3 3.9 31 163-193 314-344 (446)
17 PF01535 PPR: PPR repeat; Int 38.5 29 0.00062 21.8 2.2 23 34-56 5-27 (31)
18 PF12854 PPR_1: PPR repeat 37.3 55 0.0012 22.0 3.5 28 28-55 6-33 (34)
19 KOG1011 Neurotransmitter relea 32.5 1.4E+02 0.0029 34.1 7.2 74 336-410 877-950 (1283)
20 TIGR00756 PPR pentatricopeptid 31.5 57 0.0012 20.6 2.8 23 34-56 5-27 (35)
21 PHA00442 host recBCD nuclease 30.4 83 0.0018 24.0 3.6 39 481-521 16-58 (59)
22 PF01765 RRF: Ribosome recycli 29.7 4.5E+02 0.0097 24.4 9.5 68 414-498 86-155 (165)
23 KOG2467 Glycine/serine hydroxy 29.2 27 0.00058 37.1 1.2 80 83-184 27-106 (477)
24 TIGR02957 SigX4 RNA polymerase 28.3 2.8E+02 0.0061 28.0 8.5 120 38-202 14-135 (281)
25 PRK11032 hypothetical protein; 26.4 2.3E+02 0.0051 26.6 6.8 76 431-512 4-82 (160)
26 PF08397 IMD: IRSp53/MIM homol 26.0 2.1E+02 0.0046 27.9 6.9 53 394-461 81-133 (219)
27 KOG2180 Late Golgi protein sor 24.9 1.2E+03 0.025 27.4 25.5 255 142-410 319-598 (793)
28 KOG3048 Molecular chaperone Pr 24.5 3.2E+02 0.0068 25.3 6.9 79 363-455 46-126 (153)
29 PF13428 TPR_14: Tetratricopep 24.4 73 0.0016 22.3 2.5 23 34-56 6-28 (44)
30 PF08287 DASH_Spc19: Spc19; I 23.0 2.5E+02 0.0055 26.0 6.4 17 363-379 16-33 (153)
31 PF08154 NLE: NLE (NUC135) dom 21.7 64 0.0014 25.3 1.8 39 76-131 26-64 (65)
32 PF15151 RGCC: Response gene t 21.7 1.6E+02 0.0034 26.0 4.3 34 428-461 21-58 (121)
33 KOG3725 SH3 domain protein SH3 20.8 1.7E+02 0.0037 29.5 4.9 99 397-518 139-243 (375)
34 cd07356 HN_L-whirlin_R1_like F 20.4 3.5E+02 0.0075 22.2 5.7 50 11-67 7-66 (78)
No 1
>KOG2307 consensus Low density lipoprotein receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.3e-128 Score=994.95 Aligned_cols=507 Identities=37% Similarity=0.592 Sum_probs=464.4
Q ss_pred ChhHHHHHHHHHHHHHhHHHHhhhccCCHHHHHHHHHHHHHhcChhhHHHHHHHHhhHHHHhhhcCCCCCccccCCCcch
Q 009717 1 MEKRIKSASLLLDASLGHCFVHGLEHQNANVIYNCLRAYAAIDNTRNAEEIFCNTVVAPLMQKIIPHGPSEALAGASGDE 80 (527)
Q Consensus 1 ~~~ri~~~~~~L~~~L~~~f~~~l~~~~~~~L~~cLr~Y~~ld~~~~aE~~~r~~vV~P~~~~ii~~~~~~~~~~~~~~~ 80 (527)
+++||++++.+|+++|+++|.+||+ .+...|.+|||+|++||+++.||++||..||+||+.++|+++.. .++|+|
T Consensus 193 ~e~ria~~~~~L~qsl~~lf~eglq-sa~~~l~nclriYatld~t~~ae~lfr~~vvapyi~evI~eq~~----e~sp~g 267 (705)
T KOG2307|consen 193 SEERIAAEKIILSQSLAVLFAEGLQ-SAAGDLQNCLRIYATLDLTESAESLFRLLVVAPYIAEVINEQHD----ETSPSG 267 (705)
T ss_pred hhhHHhhHHHHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhc----cCCchh
Confidence 5899999999999999999999995 59999999999999999999999999999999999999999877 789999
Q ss_pred HHHHHHHHHHHHH-HhhHHHHHHhhhccCCCcccccchhccHHHHHHHHHhcCCccccCCCchHHHHHHHHHHHHHHHHH
Q 009717 81 LESDYEQIKQCVE-KDCKFLLDISSAENSGLHVFDFLANSILKEVLSAIQKGKPGAFSPGRPTQFLRNYKSSLDFLAYLE 159 (527)
Q Consensus 81 L~~~y~~il~fi~-~~~~~lleit~~~~~~~~~~dfl~nsvw~ev~~~l~~~l~~iFapG~Pd~F~~nY~~t~~Fl~~lE 159 (527)
|.++|++|++||. ++|+.+++++.....|++|||||+||+|++|+.+|+++||++|+||||++||+||++|++||++||
T Consensus 268 l~~~ykqilefv~~h~c~llre~tssdk~g~~~fdFlvnS~l~~ilt~iek~mps~f~Pgnp~~F~ekyk~t~DFl~~le 347 (705)
T KOG2307|consen 268 LLKLYKQILEFVKKHRCTLLREMTSSDKRGLPGFDFLVNSLLTFILTFIEKCMPSVFVPGNPRLFHEKYKLTQDFLDNLE 347 (705)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhchhhcCCCchHHHHHHHHHHHHHHHHHHhcccccCCCCcHHHHHHHHHHHHHHHhcc
Confidence 9999999999999 999999999977777899999999999999999999999999999999999999999999999999
Q ss_pred h--hCCCHHHHHHHhhchhHHHHHHhhcchhhHHHHHHHHHHhHHHhhhhcccccccCCCCCCCCCcccchhhHHHHHHH
Q 009717 160 G--YCPSRSAVAKFRAEAIYVEFMKQWNVGVYFSLRFQEIAGALDSALTAASLAPVQNSNSNQGNSQALTLKQSVTLLDS 237 (527)
Q Consensus 160 ~--~~~S~~~v~~lR~~~~y~~f~~rWnLpVYFqlRfqEIa~~lE~~L~~~~~~~~~~~~~~~~~~~~f~l~~s~~l~~~ 237 (527)
+ .|+|+.+|.+||+||.|++||+|||||||||||||||||++|++|+ ++.......+++.++..+|++.+|.++|+|
T Consensus 348 ~~~tC~s~~avt~~Rah~~~~sF~kkwNl~VYFqlrfqeiag~ldaaLt-p~~~~d~l~d~~~Est~~l~l~as~a~~ea 426 (705)
T KOG2307|consen 348 SSHTCRSMLAVTKFRAHAICVSFMKKWNLPVYFQLRFQEIAGQLDAALT-PEMFADPLTDENRESTPQLHLGASRAIIEA 426 (705)
T ss_pred ccCcCchHHHHHHHHhhhHHHHHHHhcCcceeEeeeHHHHHHHHHHhcC-chhhcccccccccccCccchhhHhHHHHHH
Confidence 9 8999999999999999999999999999999999999999999998 554433333444455568999999999999
Q ss_pred HhhhcccCccccccchHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCCCcccccCChhHHHHHHHHHHHHHHHhhhhH
Q 009717 238 MKSCWRQDVFLLPCSDKFLRLSLQLLSRYSNWLSSGLAARSSGHASFNPGNEWAISAAPDDFIYIIHDINCLATEVSGDY 317 (527)
Q Consensus 238 l~~cWs~~Vfl~~L~~rFwkLtLQllsRy~~wi~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~l~~Di~~L~~~i~~~~ 317 (527)
|++||+||||+|++.|||||||||+++||+.|++. +.+.. +++.+ .| .+.++++++++|...+.+.+.+.+
T Consensus 427 lrrcWsddvylp~~vdKl~rltlQlllRysrwisa-itns~----gs~~s-kp---~trtqlvyv~hdd~~llqevl~el 497 (705)
T KOG2307|consen 427 LRRCWSDDVYLPPIVDKLWRLTLQLLLRYSRWISA-ITNSF----GSEKS-KP---ATRTQLVYVRHDDGNLLQEVLPEL 497 (705)
T ss_pred HHHHccccccchhhHHHHHHHHHHHHHHHhHHHHH-HHhcc----CCCCC-CC---cchhheeeeecccchHHHHHhHHH
Confidence 99999999999999999999999999999999984 44321 22211 33 456789999977666666666669
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHhhchhhhcchhHHHHHHHHHHHHHHHHHhhhhccchhhhhccCCCCCCCCCcchHh
Q 009717 318 LTHVLQLLSSCSSEVLDLVKQSILEGGKSLSSMLPVVINTIVDALVEKAVEDLRQLKGITATYRMTNKPLPVRHSPYVSG 397 (527)
Q Consensus 318 ~~~I~~~l~~~~~~~~~~~~~~l~e~~~~L~~~~~~l~~~iv~~l~~~c~~~Lk~v~~Ip~~YR~Tnk~~Pt~~S~YV~~ 397 (527)
+++|+++++..+..+.+.+.++|+.++.+|.+++|.+.+.||+.+++.|...|+||++||++|||||||+||+||+||.+
T Consensus 498 le~I~~kl~~~~k~~sdv~a~sle~~g~Sl~a~lp~i~ktIIe~lsd~~~~~lrqv~dvprlyR~TnKevPtthSsYVv~ 577 (705)
T KOG2307|consen 498 LESIWGKLHDITKVFSDVFAQSLEKHGRSLDALLPQIDKTIIEMLSDVCHQELRQVSDVPRLYRWTNKEVPTTHSSYVVT 577 (705)
T ss_pred HHHHHhhccchhhhhHHHHHHHHHHhcccHHHHhhhHHHHHHHHHHHHHHHHHHHHhccHHHHHhccCCCCCcchHHHHH
Confidence 99999999988876777778899999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHhHHHHHhccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccccCCCCCCCCCCCCCc
Q 009717 398 VLRPLKTLLEGERAMTYLTPEAKNELLLDAATQITSRYHELAAELISVARKTESSLLKIRQGAQRRAGASSDVSDHNVSD 477 (527)
Q Consensus 398 il~PL~~F~~~~~~~~~l~~e~~~~~~~~v~~~vt~~Y~~~~~evL~sv~KtEeSL~RLKk~~~~~~g~~~~~~~~~~sD 477 (527)
+|+|+++|.++... .|.+.+.+||+.+|..++|.+|++.++|||+||+|||+||+|||+.+++++|+ ++.++++|||
T Consensus 578 aLrpvkal~eg~k~--~L~q~~~eeil~gv~seit~~yye~vsDVl~sv~ktesSL~Rlkq~~~~~~g~-s~gss~~vSd 654 (705)
T KOG2307|consen 578 ALRPVKALKEGLKC--ELEQPHTEEILRGVNSEITNYYYEKVSDVLDSVEKTESSLSRLKQKTTTDSGS-SGGSSQTVSD 654 (705)
T ss_pred HHHHHHHHHHhhhh--hhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCC-CCCCCCCcCc
Confidence 99999999999977 78999999999999999999999999999999999999999999999876555 5566688999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCCCCCccHHHHHHhcccccccccc
Q 009717 478 TDKICMQLFLDIQEYGRSLAALGVQAADIPPYRSLWQCVAPSDRQSLI 525 (527)
Q Consensus 478 ~dKIr~QL~LDv~~f~~~~~~lgv~~~~i~~~~~L~~~V~~~~~~~~~ 525 (527)
|||||+||++||++|+.++++||+++++|.+|++|.+++....++..+
T Consensus 655 dDKir~QL~lDv~~~~s~~~kL~fqa~di~~~~~lvel~~~~~dsa~~ 702 (705)
T KOG2307|consen 655 DDKIRQQLYLDVKYFLSYAEKLVFQAADITGLQELVELFDKDADSAIV 702 (705)
T ss_pred chHHHHHHHHHHHHHHHHHHHhcchHhhhhhHHHHHHHHHhhhhhhhh
Confidence 999999999999999999999999999999999999999888776554
No 2
>PF12022 DUF3510: Domain of unknown function (DUF3510); InterPro: IPR024603 The COG complex comprises eight proteins (COG1-8) and plays critical roles in Golgi structure and function []. This uncharacterised domain is found in the C-terminal of COG complex subunit 2 proteins.
Probab=100.00 E-value=2.1e-41 Score=302.60 Aligned_cols=125 Identities=47% Similarity=0.794 Sum_probs=116.5
Q ss_pred HHHHHHHHHHHhhhhccchhhhhccCCCCCCCCCcchHhhhHhHHHHHhccccccCCCHHHHHHHHHHHHHHHHHHHHHH
Q 009717 359 VDALVEKAVEDLRQLKGITATYRMTNKPLPVRHSPYVSGVLRPLKTLLEGERAMTYLTPEAKNELLLDAATQITSRYHEL 438 (527)
Q Consensus 359 v~~l~~~c~~~Lk~v~~Ip~~YR~Tnk~~Pt~~S~YV~~il~PL~~F~~~~~~~~~l~~e~~~~~~~~v~~~vt~~Y~~~ 438 (527)
|++|+++|+++|++|++||++|||||||+||+||+||++||+||+.|+++... .++++..++|+.+|+++|+++|++.
T Consensus 1 v~~l~~~c~~~L~~v~~Ip~~YR~Tnk~~Pt~~S~yV~~il~Pl~~F~~~~~~--~~~~~~~~~~~~~v~~~v~~~y~~~ 78 (125)
T PF12022_consen 1 VQSLTERCVEPLKQVRSIPRQYRMTNKPVPTKPSPYVSSILRPLKSFLEEYSS--YLSPEIIEEWLQKVITEVTERYYEI 78 (125)
T ss_pred CHHHHHHHHHHHHHHhhhHHHhhccCCCCCCCccHHHHHHHHHHHHHHHHhhc--cCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999855 8999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHhcccccCCCCCCCCCCCCCchHHHHHHHHHHH
Q 009717 439 AAELISVARKTESSLLKIRQGAQRRAGASSDVSDHNVSDTDKICMQLFLDI 489 (527)
Q Consensus 439 ~~evL~sv~KtEeSL~RLKk~~~~~~g~~~~~~~~~~sD~dKIr~QL~LDv 489 (527)
++|||++|+||||||+||||++++++|++ ++++||+||||+||+|||
T Consensus 79 ~~evL~sv~KtEeSL~rlkk~~~~~~~~~----~~~~sD~dKIr~QL~LDV 125 (125)
T PF12022_consen 79 ASEVLTSVRKTEESLKRLKKRRKRTSGSS----SGGMSDDDKIRLQLYLDV 125 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccc----CCCCCcHHHHHHHHHccC
Confidence 99999999999999999999997543332 267999999999999997
No 3
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=98.69 E-value=1.6e-05 Score=91.49 Aligned_cols=151 Identities=18% Similarity=0.292 Sum_probs=110.1
Q ss_pred hHHHHHHHHHHHHHhHHHHhhhccCCHHHHHHHHHHHHHhcChhhHHHHHHHHhhHHHHhhh---cCCCCCccccCCCcc
Q 009717 3 KRIKSASLLLDASLGHCFVHGLEHQNANVIYNCLRAYAAIDNTRNAEEIFCNTVVAPLMQKI---IPHGPSEALAGASGD 79 (527)
Q Consensus 3 ~ri~~~~~~L~~~L~~~f~~~l~~~~~~~L~~cLr~Y~~ld~~~~aE~~~r~~vV~P~~~~i---i~~~~~~~~~~~~~~ 79 (527)
..++..+..|.+.+.-.++.+++.+|.+...+|...|..||+...++..+.+.-..|..+.= ..... ..+-..
T Consensus 174 ~~le~l~nrLEa~vsp~Lv~al~~~~~~~~~~~~~if~~i~R~~~l~~~Y~~~r~~~l~~~W~~~~~~~~----~~~~~~ 249 (766)
T PF10191_consen 174 QQLEALKNRLEALVSPQLVQALNSRDVDAAKEYVKIFSSIGREPQLEQYYCKCRKAPLQRLWQEYCQSDQ----SQSFAE 249 (766)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhhhcc----chhHHH
Confidence 45677888899999999999999999999999999999999999999999998888876653 22210 023346
Q ss_pred hHHHHHHHHHHHHHHhhHHHHHHhhhccCCCcccccchhccHHHHHHHHHh----cCCccccCCCc----hHHHHHHHHH
Q 009717 80 ELESDYEQIKQCVEKDCKFLLDISSAENSGLHVFDFLANSILKEVLSAIQK----GKPGAFSPGRP----TQFLRNYKSS 151 (527)
Q Consensus 80 ~L~~~y~~il~fi~~~~~~lleit~~~~~~~~~~dfl~nsvw~ev~~~l~~----~l~~iFapG~P----d~F~~nY~~t 151 (527)
-|.+.|+.++..+..+++....+= ++ .+. ++-.++.++...|.- ++..+..+..| .....-|.+|
T Consensus 250 ~L~~fyd~ll~~l~~E~~w~~~vF---~~---~~~-~~~~ll~~~L~~L~PS~~~~l~~al~~~~~~~~L~~L~~l~~~t 322 (766)
T PF10191_consen 250 WLPSFYDELLSLLHQELKWCSQVF---PD---ESP-VLPKLLAETLSALQPSFPSRLSSALKRAGPETKLETLIELYQAT 322 (766)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc---CC---chh-HHHHHHHHHHHhcCccHHHHHHHHHhhcCchhhHHHHHHHHHHH
Confidence 788999999999998888765442 11 122 444555555554443 33334433443 5677889999
Q ss_pred HHHHHHHHhhCCC
Q 009717 152 LDFLAYLEGYCPS 164 (527)
Q Consensus 152 ~~Fl~~lE~~~~S 164 (527)
..|...+|....+
T Consensus 323 ~~Fa~~l~~~l~~ 335 (766)
T PF10191_consen 323 EHFARNLEHLLSS 335 (766)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999996544
No 4
>PF10474 DUF2451: Protein of unknown function C-terminus (DUF2451); InterPro: IPR019514 This protein is found in eukaryotes but its function is not known. The N-terminal domain of some members is PF10475 from PFAM (DUF2450).
Probab=97.56 E-value=0.0037 Score=62.13 Aligned_cols=126 Identities=16% Similarity=0.186 Sum_probs=88.2
Q ss_pred HHhhchhhhcchhHHHHHHHHHHHHHHHHHhhhhccchhhhhccCCCCCCCCCcchHhhhHhHHHHHhcc----ccccCC
Q 009717 340 ILEGGKSLSSMLPVVINTIVDALVEKAVEDLRQLKGITATYRMTNKPLPVRHSPYVSGVLRPLKTLLEGE----RAMTYL 415 (527)
Q Consensus 340 l~e~~~~L~~~~~~l~~~iv~~l~~~c~~~Lk~v~~Ip~~YR~Tnk~~Pt~~S~YV~~il~PL~~F~~~~----~~~~~l 415 (527)
+.+.....-+..|.+...+...++.+....-.-+..|+.. +|.-|+++++||+||+.+++-+..|...- +.. .+
T Consensus 40 l~~Fy~~tv~~v~dLr~~iy~~~a~~~l~~~~i~~~Ia~v-KWdvkev~~qhs~YVd~l~~~~~~f~~rL~~i~~~~-~i 117 (234)
T PF10474_consen 40 LEQFYSQTVSAVPDLREPIYKCVASRLLDLEQILNSIANV-KWDVKEVMSQHSSYVDQLVQEFQQFSERLDEISKQG-PI 117 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHc-CCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHhcC-CC
Confidence 3344434445567777888888777776444445566665 89999999999999999999999997644 222 67
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccccCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHH
Q 009717 416 TPEAKNELLLDAATQITSRYHELAAELISVARKTESSLLKIRQGAQRRAGASSDVSDHNVSDTDKICMQLFLDIQEYGRS 495 (527)
Q Consensus 416 ~~e~~~~~~~~v~~~vt~~Y~~~~~evL~sv~KtEeSL~RLKk~~~~~~g~~~~~~~~~~sD~dKIr~QL~LDv~~f~~~ 495 (527)
+++....+...++.-+++... |-..|.||-. +++ |.+|.||++.|...
T Consensus 118 ~~~~~~~lw~~~i~~~~~~Lv--------------eg~s~vkKCs----------------~eG--RalM~lD~q~~~~~ 165 (234)
T PF10474_consen 118 PPEVQNVLWDRLIFFAFETLV--------------EGYSRVKKCS----------------NEG--RALMQLDFQQLQNK 165 (234)
T ss_pred CHHHHHHHHHHHHHHHHHHHH--------------HHHHhccCCC----------------hhh--HHHHHHHHHHHHHH
Confidence 888777777666655544432 2455554332 122 77888899999999
Q ss_pred HHhc
Q 009717 496 LAAL 499 (527)
Q Consensus 496 ~~~l 499 (527)
++++
T Consensus 166 le~l 169 (234)
T PF10474_consen 166 LEKL 169 (234)
T ss_pred HHHH
Confidence 9988
No 5
>PF04091 Sec15: Exocyst complex subunit Sec15-like ; InterPro: IPR007225 Sec15 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0000145 exocyst; PDB: 2A2F_X.
Probab=96.18 E-value=0.14 Score=53.04 Aligned_cols=180 Identities=18% Similarity=0.196 Sum_probs=95.2
Q ss_pred ChhHHHHHHHHHHHHHHHhhhhHHHHHHHHhcc-CChhhHHHHHHHHHhhchhhhcchhHHHHHHHHHHHHHHHHHhhhh
Q 009717 295 APDDFIYIIHDINCLATEVSGDYLTHVLQLLSS-CSSEVLDLVKQSILEGGKSLSSMLPVVINTIVDALVEKAVEDLRQL 373 (527)
Q Consensus 295 ~~~~lv~l~~Di~~L~~~i~~~~~~~I~~~l~~-~~~~~~~~~~~~l~e~~~~L~~~~~~l~~~iv~~l~~~c~~~Lk~v 373 (527)
...+++-+..++.-|+..... +-++|...... .+.+. ..-..+.+.+.+....-...|...+-.+.-+.|
T Consensus 91 ~l~qi~Qi~iNl~~le~Ac~~-le~~l~~~~~~~~~~~~-----~~~l~a~~~f~~~r~~Ae~~I~~lv~~KIDe~l--- 161 (311)
T PF04091_consen 91 NLSQIVQIVINLEYLEKACKE-LEEFLSSLRGIPQSAGG-----HIRLKATKMFKDARKAAEKRIFELVNSKIDEFL--- 161 (311)
T ss_dssp -HHHHHHHHHHHHHHHTTHHH-HHHHHHHHHT---------------------S---TTHHHHHHHHHHHHHHHHHH---
T ss_pred CHHHHHHHHHhHHHHHHHHHH-HHHHHHHHcCCCccchH-----hHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 456778888888777665555 44555444321 11110 011222333443333344455554444444444
Q ss_pred ccchhhhhccCCCCCCCCCcchHhhhHhHHHHHhccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 009717 374 KGITATYRMTNKPLPVRHSPYVSGVLRPLKTLLEGERAMTYLTPEAKNELLLDAATQITSRYHELAAELISVARKTESSL 453 (527)
Q Consensus 374 ~~Ip~~YR~Tnk~~Pt~~S~YV~~il~PL~~F~~~~~~~~~l~~e~~~~~~~~v~~~vt~~Y~~~~~evL~sv~KtEeSL 453 (527)
+ ..-|-||-.++|+.||.|+..++.=|+.-.+..-. .||.++++.+..++++++++++.+. |. .+..
T Consensus 162 -e-la~yDW~~~~~~~~ps~yi~dli~fL~~~f~s~l~--~LP~~v~~~~~~~a~~his~~l~~~----Ll-----~~~v 228 (311)
T PF04091_consen 162 -E-LAEYDWTPTEPPGEPSDYINDLIQFLETTFSSTLT--NLPPSVKQLVYFSACDHISESLLDL----LL-----SDDV 228 (311)
T ss_dssp -T-T--TT--------S--HHHHHHHHHHHHHHHTTTT--TSH-HHHHHHHHHHHHHHHHHHHHH----HT---------
T ss_pred -h-hcccceecCCCCCCCCHHHHHHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHHHHHH----hc-----CCcc
Confidence 2 25589999999999999999999999988865433 7899999999999999999999984 42 2223
Q ss_pred HHHHhcccccCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhcCC---C-CCCCccHHHHHHhcc
Q 009717 454 LKIRQGAQRRAGASSDVSDHNVSDTDKICMQLFLDIQEYGRSLAALGV---Q-AADIPPYRSLWQCVA 517 (527)
Q Consensus 454 ~RLKk~~~~~~g~~~~~~~~~~sD~dKIr~QL~LDv~~f~~~~~~lgv---~-~~~i~~~~~L~~~V~ 517 (527)
+|+ .. +| =.|+-+||.++..-++.+.+ + ..-.+.|.+|.++|.
T Consensus 229 k~i---n~---~a---------------l~~~~~Dv~~lE~f~~~~~~~~~~~~~L~~~F~eLrQlvd 275 (311)
T PF04091_consen 229 KRI---NM---NA---------------LQNFDLDVKYLESFADSLPVPGNNIPSLRETFAELRQLVD 275 (311)
T ss_dssp -----------TT---------------HHHHHHHHHHHHHHHTT-SSSS--SSTTGGGGHHHHHHHH
T ss_pred ccc---CH---HH---------------HHHHHHHHHHHHHHHHhCcCcccccccHHHHHHHHHHHHH
Confidence 332 11 11 25899999999999998822 2 223467888888764
No 6
>PF07393 Sec10: Exocyst complex component Sec10; InterPro: IPR009976 This family contains the Sec10 component (approximately 650 residues long) of the eukaryotic exocyst complex, which specifically affects the synthesis and delivery of secretory and basolateral plasma membrane proteins [].; GO: 0006887 exocytosis, 0048278 vesicle docking, 0005737 cytoplasm
Probab=94.84 E-value=10 Score=43.93 Aligned_cols=456 Identities=15% Similarity=0.167 Sum_probs=228.1
Q ss_pred hhHHHHHHHHHHHHHhHHHHhhhccCCHHHHHHHHHHHHHhcChhhHHHHHHHHhhHHHHh--hhcCC----------CC
Q 009717 2 EKRIKSASLLLDASLGHCFVHGLEHQNANVIYNCLRAYAAIDNTRNAEEIFCNTVVAPLMQ--KIIPH----------GP 69 (527)
Q Consensus 2 ~~ri~~~~~~L~~~L~~~f~~~l~~~~~~~L~~cLr~Y~~ld~~~~aE~~~r~~vV~P~~~--~ii~~----------~~ 69 (527)
+.+|+.....+-+.|=+.|..+-+.+|...+.+|-++...++....+-+.|-..- +++. .-+.+ ..
T Consensus 101 ~~~I~~~~e~fE~~LL~eFe~ay~~~d~~~M~~~A~vL~~fngg~~~i~~fi~k~--~~f~~~~~~~~~~~~~~~~~~~~ 178 (710)
T PF07393_consen 101 RENIEKYCEIFENALLREFEIAYREGDYERMKEFAKVLLEFNGGSSCIDFFINKH--EFFIDEDQLDESNGFEDEEIWEK 178 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHhC--hhhhhhhhhccccccchhHHHHh
Confidence 4577888888888898999999999999999999999999998887666665411 1111 00100 00
Q ss_pred C---ccccCCCcchHHHHHHHHHHHHHHhhHHHHHHhhhccCCCccc-----ccchhccHHHHHHHHHhcCCccccCCCc
Q 009717 70 S---EALAGASGDELESDYEQIKQCVEKDCKFLLDISSAENSGLHVF-----DFLANSILKEVLSAIQKGKPGAFSPGRP 141 (527)
Q Consensus 70 ~---~~~~~~~~~~L~~~y~~il~fi~~~~~~lleit~~~~~~~~~~-----dfl~nsvw~ev~~~l~~~l~~iFapG~P 141 (527)
+ .........+|..+|+.|...+....+.+-.+= .+..+.. .++.+.|-+-|..-|..... ..+
T Consensus 179 l~d~~~~~~~~~~~l~~~~~~i~~~i~~e~~iI~~VF---p~~~~Vm~~fiervf~~~I~~~i~~lL~~a~~-----~s~ 250 (710)
T PF07393_consen 179 LSDPDSHPPINEESLDAFFEDIRDVINEESKIIDRVF---PNPEPVMQKFIERVFEQVIQEYIESLLEEASS-----IST 250 (710)
T ss_pred ccCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHC---CCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-----CCH
Confidence 0 000122345789999999999998888665552 2111111 12223333333333322221 134
Q ss_pred ----hHHHHHHHHHHHHHHHHHhhCCC---------HHHHHHHhh-----c---hhHHHHHHhh-------cchhhHHHH
Q 009717 142 ----TQFLRNYKSSLDFLAYLEGYCPS---------RSAVAKFRA-----E---AIYVEFMKQW-------NVGVYFSLR 193 (527)
Q Consensus 142 ----d~F~~nY~~t~~Fl~~lE~~~~S---------~~~v~~lR~-----~---~~y~~f~~rW-------nLpVYFqlR 193 (527)
..+|.-|..+.+|++.|.....+ ...+..+-. | ..|-..+.+| .+.-|.++.
T Consensus 251 ~~YLr~l~~~y~~t~~lv~~L~~~~~~~~~~~~~~~~~~l~~~~~~lF~~~l~~~~Yl~~E~~~l~~~~~~~l~~f~~~~ 330 (710)
T PF07393_consen 251 LAYLRTLHGLYSQTKKLVDDLKEFFSGENPDPDSSDSAFLDQLVESLFEPYLEDDEYLEEEKRSLKELLESILSRFNELH 330 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccCCCccchHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556688999999999887221 111111111 1 2333333332 111111111
Q ss_pred HH-------------HHHHhHHHhhhh-----------------cccccccC-----------------CCCCCCCCccc
Q 009717 194 FQ-------------EIAGALDSALTA-----------------ASLAPVQN-----------------SNSNQGNSQAL 226 (527)
Q Consensus 194 fq-------------EIa~~lE~~L~~-----------------~~~~~~~~-----------------~~~~~~~~~~f 226 (527)
=+ .+...+..++.. ..+.+... .....+....+
T Consensus 331 e~~~~~~~~~~~~k~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 410 (710)
T PF07393_consen 331 EREISTKSLSNKLKNQFLTSFKNVLMSSSSSSSSKLSQISSFMSSKLDRSQQQASLENNLDLAAKANIMSSNLEGIDSLL 410 (710)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHhhccccccccchhHHHhhhhhcccCcccccccccchhhhhccccccccccccccccC
Confidence 01 111111111100 00000000 00000111123
Q ss_pred chhhH----HHHHHHHhhhc--ccCccccccchHHHHHHHHHH-HHHHHHHhhhhhcccCCCCCCCCCCccccc-CChhH
Q 009717 227 TLKQS----VTLLDSMKSCW--RQDVFLLPCSDKFLRLSLQLL-SRYSNWLSSGLAARSSGHASFNPGNEWAIS-AAPDD 298 (527)
Q Consensus 227 ~l~~s----~~l~~~l~~cW--s~~Vfl~~L~~rFwkLtLQll-sRy~~wi~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 298 (527)
.+... ...-+++.||- ++.--++.-+-..+.+.++-+ .+|. ..++.+...+-...+.. .... ..+.
T Consensus 411 s~~~a~~il~~~~es~~R~~~l~~~~~~~~~~~~if~~Ll~~l~~~~i---~~~lea~~~~~~~~~~~--~~~~~~~l~- 484 (710)
T PF07393_consen 411 SLEVAENILQWNKESLGRCLELSPPSDLPKNCQEIFEILLQSLGEEHI---EPALEAAYYKLSSQDIA--ESKEVPPLV- 484 (710)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhhhccccc--ccCCCCCcc-
Confidence 33332 33345566653 234444555555555555544 5554 33343111000011100 0011 1223
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHhccCChhhHHHHHHHHHhhchhhhcchhHHHHHHHHHHHHHHHHHhhhhccchh
Q 009717 299 FIYIIHDINCLATEVSGDYLTHVLQLLSSCSSEVLDLVKQSILEGGKSLSSMLPVVINTIVDALVEKAVEDLRQLKGITA 378 (527)
Q Consensus 299 lv~l~~Di~~L~~~i~~~~~~~I~~~l~~~~~~~~~~~~~~l~e~~~~L~~~~~~l~~~iv~~l~~~c~~~Lk~v~~Ip~ 378 (527)
+..++.-++.+...+...|.+.|.|.+. ..++....+.+........++..+....+..++.+...+...|. ..-+.
T Consensus 485 fl~~i~~~~~i~~l~~~~~~~~l~pl~~-~~~~~~~~~~~~k~~~~~~le~~v~~gL~~~i~~l~~~v~~iL~--~Qkk~ 561 (710)
T PF07393_consen 485 FLELINQADTILQLLQIFYKEELLPLIQ-SSPDFLNECIQKKKSFESRLEEKVNAGLNKGIDVLMNWVEFILS--EQKKT 561 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hcCCC
Confidence 6777777788888888877777777764 22333333333333444445544555555566666665544444 55566
Q ss_pred hhhccCCC-----CCCCCCcchHhhhHhHHHHHhccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 009717 379 TYRMTNKP-----LPVRHSPYVSGVLRPLKTLLEGERAMTYLTPEAKNELLLDAATQITSRYHELAAELISVARKTESSL 453 (527)
Q Consensus 379 ~YR~Tnk~-----~Pt~~S~YV~~il~PL~~F~~~~~~~~~l~~e~~~~~~~~v~~~vt~~Y~~~~~evL~sv~KtEeSL 453 (527)
=|+..+-. .||.+|.-|-..|..+..-..+ .+.... +...+.++..+++... .+-+
T Consensus 562 Df~p~~~~~~~~~~~T~ac~~vv~~L~~~~~~~~~-----~l~~~n----l~~f~~elg~~l~~~l----------~~h~ 622 (710)
T PF07393_consen 562 DFKPKEDDLSLDQQPTPACQEVVEFLERHCSLLKG-----SLDGSN----LDVFLQELGERLHRLL----------LKHL 622 (710)
T ss_pred CCCCCccccccccCCCHHHHHHHHHHHHHHHHHHH-----Hccchh----HHHHHHHHHHHHHHHH----------HHHH
Confidence 67763322 3666655555444444333322 344333 4455677778888742 1234
Q ss_pred HHHHhcccccCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCccHHHHHHh
Q 009717 454 LKIRQGAQRRAGASSDVSDHNVSDTDKICMQLFLDIQEYGRSLAALGVQAADIPPYRSLWQC 515 (527)
Q Consensus 454 ~RLKk~~~~~~g~~~~~~~~~~sD~dKIr~QL~LDv~~f~~~~~~lgv~~~~i~~~~~L~~~ 515 (527)
+|++=.. .|| +||.-|+.+|..-+..+|++. =.+.|..|.++
T Consensus 623 kk~~vs~-----------~Gg--------~~l~~Dl~~Y~~~~~~~~~~~-v~~~F~~L~~l 664 (710)
T PF07393_consen 623 KKFTVSS-----------TGG--------LQLIKDLNEYQDFIRSWGIPS-VDEKFEALKEL 664 (710)
T ss_pred HhCccCc-----------hhH--------HHHHHHHHHHHHHHHHcCCch-HHHHHHHHHHH
Confidence 4432111 111 789999999999999998753 34667777663
No 7
>KOG2033 consensus Low density lipoprotein B-like protein [Lipid transport and metabolism]
Probab=90.33 E-value=1.5 Score=49.33 Aligned_cols=80 Identities=25% Similarity=0.387 Sum_probs=63.6
Q ss_pred CCCCCCCcchHhhhHhHHHHHhccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccccCC
Q 009717 386 PLPVRHSPYVSGVLRPLKTLLEGERAMTYLTPEAKNELLLDAATQITSRYHELAAELISVARKTESSLLKIRQGAQRRAG 465 (527)
Q Consensus 386 ~~Pt~~S~YV~~il~PL~~F~~~~~~~~~l~~e~~~~~~~~v~~~vt~~Y~~~~~evL~sv~KtEeSL~RLKk~~~~~~g 465 (527)
..|..||.||.+.+.-|.+=.+....+ .|++.+.++++...+..++-.|-.. ..++.|+.|
T Consensus 638 rLPsqPslyiqSfL~rl~qeInrvggh-~Lp~~vLQ~f~~sl~~k~~~~YE~l-----~~a~~~kas------------- 698 (863)
T KOG2033|consen 638 RLPSQPSLYIQSFLQRLHQEINRVGGH-TLPPKVLQAFIQSLIGKLLCHYEGL-----AHAECTKAS------------- 698 (863)
T ss_pred ecCCCccHHHHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHHHhhh-----hHHHHHHHH-------------
Confidence 389999999999999999888876554 7999999999999999999999884 455555321
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 009717 466 ASSDVSDHNVSDTDKICMQLFLDIQEYGRSLA 497 (527)
Q Consensus 466 ~~~~~~~~~~sD~dKIr~QL~LDv~~f~~~~~ 497 (527)
+||-+||++|..+...-+.
T Consensus 699 -------------qn~aLQll~DLrfl~~Vl~ 717 (863)
T KOG2033|consen 699 -------------QNIALQLLFDLRFLERVLA 717 (863)
T ss_pred -------------HhhHHHHHHHHHHHHHHHh
Confidence 5677888888877655443
No 8
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=89.99 E-value=6.3 Score=44.53 Aligned_cols=194 Identities=10% Similarity=0.126 Sum_probs=108.0
Q ss_pred hhHHHHHHHHHHHHHhHHHHhhhc----c------------------CCH--HHHHHHHHHHHHhcChhhHHHHHHHHhh
Q 009717 2 EKRIKSASLLLDASLGHCFVHGLE----H------------------QNA--NVIYNCLRAYAAIDNTRNAEEIFCNTVV 57 (527)
Q Consensus 2 ~~ri~~~~~~L~~~L~~~f~~~l~----~------------------~~~--~~L~~cLr~Y~~ld~~~~aE~~~r~~vV 57 (527)
+.+.......|...|++.|.+.+. . .+. ..|...|.+...+|.....-+-|.+.++
T Consensus 156 k~e~~~lr~~L~~~L~~~w~~lv~~~~~~~k~~~~~~~~~~v~l~vs~~~~~~~L~~vl~AL~~lg~L~~~l~~~~~~Ll 235 (593)
T PF06248_consen 156 KDEYSELRENLQYQLSEEWERLVQWDSPSSKQLSSPESTLKVTLHVSKSESQESLQDVLQALEILGILDYKLKKFSKFLL 235 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHhheeecCCCcccccccccceEEEEEeecCcccchHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 345666777888888888877644 0 111 2399999999999999888888888776
Q ss_pred HHHHhhhcCCCCCcc----cc---------------CCCcchHHHHHHHHHHHHHHhhHHHHHHhhhccCCCcccccchh
Q 009717 58 APLMQKIIPHGPSEA----LA---------------GASGDELESDYEQIKQCVEKDCKFLLDISSAENSGLHVFDFLAN 118 (527)
Q Consensus 58 ~P~~~~ii~~~~~~~----~~---------------~~~~~~L~~~y~~il~fi~~~~~~lleit~~~~~~~~~~dfl~n 118 (527)
.-.+.-+|....... .. ......-..+|++|+.++..-...|+...... ..-+..++.
T Consensus 236 ~~ii~PlI~~p~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~V~~~l~~vf~fL~~~L~~~~~~~---~~l~~~~g~ 312 (593)
T PF06248_consen 236 EHIIKPLISHPSSIVSVEESEDGSVEITLSYEPDSSKDKRPSPKEVFSNLLLVFEFLHQHLLSLPSSD---SSLSESFGD 312 (593)
T ss_pred HHHHHHHhcCCCCcccccccCCCcceEEEEeecccccccCCCHHHHHHHHHHHHHHHHHHhcccCCch---hHHHHHHHH
Confidence 644444443221100 00 01112346788887776655444444221100 023578999
Q ss_pred ccHHHHHHHHHhcCCccccCCCchHHHHHHHHHHHHHHHHHhhCCCHHHHHHHhhchhHHHHHHhh--cchhhHHHHHHH
Q 009717 119 SILKEVLSAIQKGKPGAFSPGRPTQFLRNYKSSLDFLAYLEGYCPSRSAVAKFRAEAIYVEFMKQW--NVGVYFSLRFQE 196 (527)
Q Consensus 119 svw~ev~~~l~~~l~~iFapG~Pd~F~~nY~~t~~Fl~~lE~~~~S~~~v~~lR~~~~y~~f~~rW--nLpVYFqlRfqE 196 (527)
.+||++.+.|.++.-.-=-|-+.+.+.. |....+-...||.....- .|-. +.. .-..+| |.+.+|.=|.+.
T Consensus 313 ~i~~~ls~~lI~~~L~~aiP~~~~~l~~-f~~v~~~~~~Fe~~L~~l----gf~~-~~~-~~L~~~~~~i~~~f~~kr~~ 385 (593)
T PF06248_consen 313 HIWPRLSELLISNCLSPAIPTSASELQE-FEEVLESVEEFEEALKEL----GFLS-SDN-TELSEFVDNIETHFANKRCQ 385 (593)
T ss_pred HHHHHHHHHHHHhhCcCcCCCCHHHHHH-HHHHHHHHHHHHHHHHHc----CCcC-CCc-hHHHHHHHhHHHHHHHHHHH
Confidence 9999999988776422223444444333 665554444444421100 0000 000 122566 889999887654
Q ss_pred -HHHhHHHhh
Q 009717 197 -IAGALDSAL 205 (527)
Q Consensus 197 -Ia~~lE~~L 205 (527)
|..+--..+
T Consensus 386 ~iL~~AR~lm 395 (593)
T PF06248_consen 386 DILDKARDLM 395 (593)
T ss_pred HHHHHHHHHH
Confidence 433333333
No 9
>PF14923 CCDC142: Coiled-coil protein 142
Probab=87.58 E-value=8.5 Score=41.86 Aligned_cols=83 Identities=20% Similarity=0.244 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHH----HhhhhccchhhhhccCCC-CCCCCCcchHhhhHhHH-HHHhccccccCCCHHHHHHHHHH
Q 009717 353 VVINTIVDALVEKAVE----DLRQLKGITATYRMTNKP-LPVRHSPYVSGVLRPLK-TLLEGERAMTYLTPEAKNELLLD 426 (527)
Q Consensus 353 ~l~~~iv~~l~~~c~~----~Lk~v~~Ip~~YR~Tnk~-~Pt~~S~YV~~il~PL~-~F~~~~~~~~~l~~e~~~~~~~~ 426 (527)
.+.+.++..+...|.. .++.+-=-.+-.|+-..+ .|+.||.||..++.-+- -.+++.. .++++.....+..
T Consensus 231 ~~s~e~~~~f~~~C~~~s~~~f~~~mP~g~~WR~~~~~~lP~~pS~Yv~~~v~~vl~PVl~g~q---~L~~~aq~~~l~~ 307 (450)
T PF14923_consen 231 SLSSECLRLFSQDCRKMSLAIFELCMPSGRYWRRSLSPELPSAPSEYVEYVVETVLEPVLQGVQ---GLPPEAQIPALSQ 307 (450)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHhCCCcchhcccCCCCCCCCccHHHHHHHHHHHHHHHHHhc---CCChHHHHHHHHH
Confidence 3445556666666655 444444446677776555 69999999976554432 2233332 4666666666666
Q ss_pred HHHHHHHHHHHH
Q 009717 427 AATQITSRYHEL 438 (527)
Q Consensus 427 v~~~vt~~Y~~~ 438 (527)
+++.+++.....
T Consensus 308 ~l~a~~eAWLdh 319 (450)
T PF14923_consen 308 ALTAMLEAWLDH 319 (450)
T ss_pred HHHHHHHHHHHH
Confidence 666666665554
No 10
>PF06046 Sec6: Exocyst complex component Sec6; InterPro: IPR010326 Sec6 is a component of the multiprotein exocyst complex. Sec6 interacts with Sec8, Sec10 and Exo70.These exocyst proteins localise to regions of active exocytosis-at the growing ends of interphase cells and in the medial region of cells undergoing cytokinesis-in an F-actin-dependent and exocytosis- independent manner [].; PDB: 2FJI_2.
Probab=77.04 E-value=35 Score=38.20 Aligned_cols=162 Identities=12% Similarity=0.159 Sum_probs=88.3
Q ss_pred hhHHHHHHHHHHHHHHHhhhhHHHHHHHHhccCChhhHHHHHHHHHhhchhhhcchhHHHHHHHHHHHHHHHHHhhhhcc
Q 009717 296 PDDFIYIIHDINCLATEVSGDYLTHVLQLLSSCSSEVLDLVKQSILEGGKSLSSMLPVVINTIVDALVEKAVEDLRQLKG 375 (527)
Q Consensus 296 ~~~lv~l~~Di~~L~~~i~~~~~~~I~~~l~~~~~~~~~~~~~~l~e~~~~L~~~~~~l~~~iv~~l~~~c~~~Lk~v~~ 375 (527)
.+.+++++.|+..+...+.. +...+... .+.+....+...+.+..+.+..+.....+.+++.+...+..+++.+-
T Consensus 315 ~eyliA~~N~~~~~~~~~~~-l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~~if~Dl~p~~~~Lf- 389 (566)
T PF06046_consen 315 LEYLIAVANNCLRCRDYVES-LEQKFEEK---VSQKYMERISSDLEELMDGFDDLAKECCQYLLEEIFNDLKPHFKKLF- 389 (566)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHHHHTT---S-HHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHCTHHHHCTTT-
T ss_pred HHHHHHHhccHHHHHHHHHH-HHHhcccc---cchHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhC-
Confidence 46789999999998875444 22222222 22222122233344433344333333333444444433333333221
Q ss_pred chhhhhccCCCCCCCCCcchHhhhHhHHHHHhccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 009717 376 ITATYRMTNKPLPVRHSPYVSGVLRPLKTLLEGERAMTYLTPEAKNELLLDAATQITSRYHELAAELISVARKTESSLLK 455 (527)
Q Consensus 376 Ip~~YR~Tnk~~Pt~~S~YV~~il~PL~~F~~~~~~~~~l~~e~~~~~~~~v~~~vt~~Y~~~~~evL~sv~KtEeSL~R 455 (527)
|++=.-. ..|..|+.-+..|....+. ++.+...+.++..+...+...|.... +. +|
T Consensus 390 -------t~~W~~~---~~~~~I~~Ti~dY~~d~~~--~l~~~~~~~l~~~~~~~~v~~Yl~~l---~~---------kk 445 (566)
T PF06046_consen 390 -------TKKWYSG---EAVDTICATIEDYLQDFQH--YLRPPYFQELIEELHDRVVKEYLRAL---MK---------KK 445 (566)
T ss_dssp -------SGGGCTS----HHHHHHHHHHHHHHHHCC--CS-HHHHHHHHHHHHHHHHHHHHHGG---GG-----------
T ss_pred -------cCcCcCc---chHHHHHHHHHHHHHHHHH--hccccHHHHHHHHHHHHHHHHHHHHH---HH---------hh
Confidence 2111111 7889999999999987765 79999999999999999999998742 11 22
Q ss_pred HHhcccccCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhcC
Q 009717 456 IRQGAQRRAGASSDVSDHNVSDTDKICMQLFLDIQEYGRSLAALG 500 (527)
Q Consensus 456 LKk~~~~~~g~~~~~~~~~~sD~dKIr~QL~LDv~~f~~~~~~lg 500 (527)
++=+. ..+.++.--||..|++.+.....+++
T Consensus 446 ~~~~~--------------~~~~~~~a~~i~~D~~~l~~~F~~~~ 476 (566)
T PF06046_consen 446 IKFKN--------------KEERKEAAERIRRDAEQLKSFFSKLG 476 (566)
T ss_dssp ---------------------CCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred hhccc--------------HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 21100 01122234466678888888888887
No 11
>PF04437 RINT1_TIP1: RINT-1 / TIP-1 family; InterPro: IPR007528 This family includes RINT-1, a Rad50 interacting protein which participates in radiation induced checkpoint control [], that interacts with Rad50 only during late S and G2/M phases. RINT1 also functions in membrane trafficking from the endoplasmic reticulum(ER) to the Golgi complex in interphase cells [, , ]. In addition to this, the TIP-1 protein, which is involved in the retrograde transport from the Golgi to the ER []. They share a similar domain organisation with an N-terminal leucine heptad repeat rich coiled coil and an ~500-residue C-terminal RINT1/TIP20 domain, which might be a protein-protein interaction module necessary for the formation of functional complexes.; PDB: 3FHN_A.
Probab=73.99 E-value=1.5e+02 Score=32.78 Aligned_cols=360 Identities=16% Similarity=0.174 Sum_probs=160.9
Q ss_pred HHhhHHHHhhhcCCCCCccccCCCcchHHHHHHHHHHHHHHhhHHHHHHh---hhccCCCcccc---cchhccHHHHHHH
Q 009717 54 NTVVAPLMQKIIPHGPSEALAGASGDELESDYEQIKQCVEKDCKFLLDIS---SAENSGLHVFD---FLANSILKEVLSA 127 (527)
Q Consensus 54 ~~vV~P~~~~ii~~~~~~~~~~~~~~~L~~~y~~il~fi~~~~~~lleit---~~~~~~~~~~d---fl~nsvw~ev~~~ 127 (527)
+.+|.|+..+--=| ..+...-+.++.-+=.|+.|++++..+...+.++. -.. .+..++| =+.+++++.+.+.
T Consensus 4 ~~l~~p~~~rF~yH-F~~~r~Tn~~~kPEw~f~~i~~~~~~~~~~l~~~iq~~~~~-~~~~~~~~~~~fi~~ll~~~~~K 81 (494)
T PF04437_consen 4 DVLVNPFKKRFRYH-FMGNRPTNRLDKPEWYFTFILKWIRDHRDFLEECIQPLLDE-NGLTYIDAREEFIRGLLPPVREK 81 (494)
T ss_dssp HHHCHHHHHHHHHH-T----S---CCCHHHHHHHHHHHHHHH---HHHHHHHH-BG-GTB-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-cCCCCCcCcccchHHHHHHHHHHHHHhhHHHHHHcCHHHHh-cCCccccHHHHHHHHHHHHHHHH
Confidence 45778887775311 00000023445567778888888887744443333 222 2333333 2357888888888
Q ss_pred HHhcCCccccCCCchHHHHHHHHHHHHHHHHHhh---CC-CH-HHHHHHhhchhHHHHHHhhcchhhHHHHHHHHHHhHH
Q 009717 128 IQKGKPGAFSPGRPTQFLRNYKSSLDFLAYLEGY---CP-SR-SAVAKFRAEAIYVEFMKQWNVGVYFSLRFQEIAGALD 202 (527)
Q Consensus 128 l~~~l~~iFapG~Pd~F~~nY~~t~~Fl~~lE~~---~~-S~-~~v~~lR~~~~y~~f~~rWnLpVYFqlRfqEIa~~lE 202 (527)
|...++. ...+|..|.-----.+.|=.+|-.. .+ .. ..+..|- +|.+ ..+| .++.-+.-..+++
T Consensus 82 l~~~l~~--~~~~~~~l~HlI~e~~~FD~~L~~~~~y~~d~~~~~~~vL~-~~~~---~~~W-----l~~E~~~a~~r~~ 150 (494)
T PF04437_consen 82 LRSDLPE--LLDDPSLLSHLIDEILSFDKELRSLYGYPGDWQGSTLDVLC-QPDW---FDRW-----LNAEKEFALERFD 150 (494)
T ss_dssp HHHHH----TTS-HHHHHHHHHHHHHHHHHHHHTS---S------CGGGS--HHH---HHHH-----HHHHHHHHHHHHH
T ss_pred HHHHHHh--hccChhHHHHHHHHHHHHHHHHHHHcCCCCccchhHHHHhc-chHH---HHHH-----HHHHHHHHHHHHh
Confidence 8887763 5678888877777778887777653 23 01 1122221 2222 2444 2333333333444
Q ss_pred HhhhhcccccccCCCCCCCCCcccchhhHHHHHHHHhhhcc---cCccccccch--HHH-HHHHHHHHHHHHHHhhhhhc
Q 009717 203 SALTAASLAPVQNSNSNQGNSQALTLKQSVTLLDSMKSCWR---QDVFLLPCSD--KFL-RLSLQLLSRYSNWLSSGLAA 276 (527)
Q Consensus 203 ~~L~~~~~~~~~~~~~~~~~~~~f~l~~s~~l~~~l~~cWs---~~Vfl~~L~~--rFw-kLtLQllsRy~~wi~~~~~~ 276 (527)
+.+..+..-....... ... .-.++++.....-+.-.|+ ----+|.+.| ||+ +.-+.+|..|..++.+.+.+
T Consensus 151 ~i~~s~~aw~~~~~~~-~~~--~~~~k~t~~A~~~~~Ll~~it~ry~~L~~~~~rl~Fl~~iql~lld~~~~~L~~~~~~ 227 (494)
T PF04437_consen 151 EIISSPDAWQIDYDDV-EAD--SDELKPTKSAERFVKLLESITDRYRPLPSLSHRLRFLIDIQLPLLDDYHDRLSQSLEA 227 (494)
T ss_dssp ---------------H-TTS--SGGGG-GGHHHHHHHHHHHHHHHHHHHHH---GG--GHHHHHHHHHHTHHHHHHHHHH
T ss_pred hhcccchhhhhhhccc-cCC--chhhcchHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4333111000000000 001 1123333333333333332 1122555555 458 88888999998888877554
Q ss_pred ccCCCCCCCCCCcccccCChhHHHHHHHHHHHHHHHhhh-----hHHHHHHHHhccCCh---hhHHHHHH----HHHhhc
Q 009717 277 RSSGHASFNPGNEWAISAAPDDFIYIIHDINCLATEVSG-----DYLTHVLQLLSSCSS---EVLDLVKQ----SILEGG 344 (527)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~lv~l~~Di~~L~~~i~~-----~~~~~I~~~l~~~~~---~~~~~~~~----~l~e~~ 344 (527)
-... +++ ...-......+.++.++.=++-+...+.+ .|++.-.......+. +....... .+.+..
T Consensus 228 ~~~~-~s~--~~~~~~~~~l~~l~~~lnsa~yi~~~L~eW~e~~~Flq~~~~~~~~~~~~~~~~~~~~~~~~~siFde~i 304 (494)
T PF04437_consen 228 FESS-TST--LASLSGDSGLERLCKILNSANYIENVLREWSEDVFFLQMRAKESESSNNSLEDIANETSSEEGSIFDETI 304 (494)
T ss_dssp HHHT-------SCEEHHHHHHHHHHHHHHHHHHHHHHHHHCTSHHHH------------HHHHHHHHHTT--S-TTHHHH
T ss_pred Hhhc-ccc--hhhccCCchHHHHHHHHHHHHHHHHHHHHhcCCCeeehhhccchhhcccccccccccccCCCCCcHHHHH
Confidence 3210 010 01111112334566666666666655554 223100000000000 00000000 134444
Q ss_pred hhhhcchhHHHHHHHHHHHHHHHHHhhhhccchhhhhccCC-----CCCCCCCcchHhhhHhHHHHHhccccccCCCHHH
Q 009717 345 KSLSSMLPVVINTIVDALVEKAVEDLRQLKGITATYRMTNK-----PLPVRHSPYVSGVLRPLKTLLEGERAMTYLTPEA 419 (527)
Q Consensus 345 ~~L~~~~~~l~~~iv~~l~~~c~~~Lk~v~~Ip~~YR~Tnk-----~~Pt~~S~YV~~il~PL~~F~~~~~~~~~l~~e~ 419 (527)
..++.+...+.+.|+..+...-...|+.=..... |+.- +.|..+|+-....|.-|+..+..-.. .|++..
T Consensus 305 ~~y~~l~~~~~~~iv~~v~~~~k~~lk~Y~k~~~---W~~~~~~~~~~~~~~S~el~~~L~~L~~~L~~L~~--~L~~~~ 379 (494)
T PF04437_consen 305 SAYEKLRKRMLESIVDRVVKEFKASLKAYFKRSQ---WSSIESPSDSSPLSPSPELVPALSLLRSRLSFLER--SLPPAD 379 (494)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHTHHHHT--G---GGT-------------GGGHHHHHHHHHHHHHHHT--S--HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccC---CCCcccccccccCCCCHHHHHHHHHHHHHHHHHHH--HcCHHH
Confidence 4455555555556666665555555554332211 2222 34688899999999999988877655 689988
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 009717 420 KNELLLDAATQITSRYHE 437 (527)
Q Consensus 420 ~~~~~~~v~~~vt~~Y~~ 437 (527)
...+...+++.+...+.+
T Consensus 380 f~~i~r~ia~~l~~~l~~ 397 (494)
T PF04437_consen 380 FRRIWRRIASKLDDYLWE 397 (494)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888888988888887766
No 12
>smart00762 Cog4 COG4 transport protein. This region is found in yeast oligomeric golgi complex component 4 which is involved in ER to Golgi and intra Golgi transport.
Probab=69.37 E-value=23 Score=37.03 Aligned_cols=53 Identities=11% Similarity=0.219 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHhHHHHhhhccCCHHHHHHHHHHHHHhcChhhHHHHHHHHhh
Q 009717 5 IKSASLLLDASLGHCFVHGLEHQNANVIYNCLRAYAAIDNTRNAEEIFCNTVV 57 (527)
Q Consensus 5 i~~~~~~L~~~L~~~f~~~l~~~~~~~L~~cLr~Y~~ld~~~~aE~~~r~~vV 57 (527)
++.++.+|..-+.+-|.++++.+|...+.+|.+.|-.||+-.+.-+.+-+.+.
T Consensus 1 L~~~~~~L~~~~~~~F~~Av~~~D~~~i~rffkLFpllg~~eeGL~~Y~~yic 53 (324)
T smart00762 1 LDEARETLTELFKERFDEAVKAQDVPELTRFFKLFPLIGMEEEGLELYSKYIC 53 (324)
T ss_pred ChHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCChHhhHHHHHHHHH
Confidence 36788999999999999999999999999999999999999999999887553
No 13
>PF08318 COG4: COG4 transport protein; InterPro: IPR013167 This region is found in yeast oligomeric golgi complex component 4 which is involved in ER to Golgi and intra Golgi transport [].
Probab=65.84 E-value=35 Score=35.69 Aligned_cols=55 Identities=7% Similarity=0.134 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHhHHHHhhhccCCHHHHHHHHHHHHHhcChhhHHHHHHHHhhHH
Q 009717 5 IKSASLLLDASLGHCFVHGLEHQNANVIYNCLRAYAAIDNTRNAEEIFCNTVVAP 59 (527)
Q Consensus 5 i~~~~~~L~~~L~~~f~~~l~~~~~~~L~~cLr~Y~~ld~~~~aE~~~r~~vV~P 59 (527)
++.++..|..-+.+-|.++.+.+|.+.+.++.+.|-.||+-.+.-+.|-+.|...
T Consensus 1 L~~a~~~L~~~f~~~F~~A~~~~D~~~v~rffkLFPlig~~eeGL~~Y~~ylc~~ 55 (331)
T PF08318_consen 1 LDEARESLCEIFLKKFDEAAQANDVAQVTRFFKLFPLIGQEEEGLDLYSKYLCDI 55 (331)
T ss_pred ChHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHH
Confidence 4678899999999999999999999999999999999999999999998866443
No 14
>PLN03242 diacylglycerol o-acyltransferase; Provisional
Probab=40.84 E-value=30 Score=37.31 Aligned_cols=31 Identities=19% Similarity=0.327 Sum_probs=24.5
Q ss_pred CCHHHHHHHhhchhHHHHHHhhcchhhHHHH
Q 009717 163 PSRSAVAKFRAEAIYVEFMKQWNVGVYFSLR 193 (527)
Q Consensus 163 ~S~~~v~~lR~~~~y~~f~~rWnLpVYFqlR 193 (527)
+++.=-+.+=++.++.+|.|+||.|||-=+.
T Consensus 289 gDR~FY~DWWNs~s~~eywR~WN~PVH~fl~ 319 (410)
T PLN03242 289 GDREFYKDWWNASEVSEYWRLWNMPVHYWLV 319 (410)
T ss_pred hhhhhhhhhhccCcHHHHHHHcchHHHHHHH
Confidence 4555566677889999999999999986554
No 15
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=39.49 E-value=1.2e+02 Score=31.02 Aligned_cols=59 Identities=10% Similarity=0.163 Sum_probs=47.8
Q ss_pred hhHHHHHHHHHHHHHhHHHHhhhccCCHHHHHHHHHHHHHhcChhhHHHHHHHHhhHHH
Q 009717 2 EKRIKSASLLLDASLGHCFVHGLEHQNANVIYNCLRAYAAIDNTRNAEEIFCNTVVAPL 60 (527)
Q Consensus 2 ~~ri~~~~~~L~~~L~~~f~~~l~~~~~~~L~~cLr~Y~~ld~~~~aE~~~r~~vV~P~ 60 (527)
..+++.....+...|+..|.....+-|++.=...+.+|..||++..+-+-+-...+.+.
T Consensus 170 ~~~L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~dkl~~~f~~~i 228 (291)
T PF10475_consen 170 SSQLQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMDKLQMHFTSAI 228 (291)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 46777888888888889999888899999999999999999998887765555544433
No 16
>PLN02401 diacylglycerol o-acyltransferase
Probab=39.02 E-value=34 Score=37.29 Aligned_cols=31 Identities=16% Similarity=0.228 Sum_probs=24.5
Q ss_pred CCHHHHHHHhhchhHHHHHHhhcchhhHHHH
Q 009717 163 PSRSAVAKFRAEAIYVEFMKQWNVGVYFSLR 193 (527)
Q Consensus 163 ~S~~~v~~lR~~~~y~~f~~rWnLpVYFqlR 193 (527)
+++.=-+.+=++.++.+|.++||.||+-=+.
T Consensus 314 gDR~FY~DWWNs~s~~eywR~WN~PVH~fL~ 344 (446)
T PLN02401 314 GDREFYKDWWNAKTVEEYWRMWNMPVHKWMV 344 (446)
T ss_pred hhhhhhhhhhccCcHHHHHHHcchHHHHHHH
Confidence 4555566677889999999999999985554
No 17
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=38.50 E-value=29 Score=21.77 Aligned_cols=23 Identities=17% Similarity=0.309 Sum_probs=20.1
Q ss_pred HHHHHHHHhcChhhHHHHHHHHh
Q 009717 34 NCLRAYAAIDNTRNAEEIFCNTV 56 (527)
Q Consensus 34 ~cLr~Y~~ld~~~~aE~~~r~~v 56 (527)
..+++|+..|+..+|+++|++..
T Consensus 5 ~li~~~~~~~~~~~a~~~~~~M~ 27 (31)
T PF01535_consen 5 SLISGYCKMGQFEEALEVFDEMR 27 (31)
T ss_pred HHHHHHHccchHHHHHHHHHHHh
Confidence 46889999999999999999854
No 18
>PF12854 PPR_1: PPR repeat
Probab=37.26 E-value=55 Score=21.95 Aligned_cols=28 Identities=14% Similarity=0.205 Sum_probs=23.1
Q ss_pred CHHHHHHHHHHHHHhcChhhHHHHHHHH
Q 009717 28 NANVIYNCLRAYAAIDNTRNAEEIFCNT 55 (527)
Q Consensus 28 ~~~~L~~cLr~Y~~ld~~~~aE~~~r~~ 55 (527)
|.-.-...+.+|+.-|++.+|.++|++.
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 4445566789999999999999999874
No 19
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=32.48 E-value=1.4e+02 Score=34.13 Aligned_cols=74 Identities=22% Similarity=0.201 Sum_probs=46.2
Q ss_pred HHHHHHhhchhhhcchhHHHHHHHHHHHHHHHHHhhhhccchhhhhccCCCCCCCCCcchHhhhHhHHHHHhccc
Q 009717 336 VKQSILEGGKSLSSMLPVVINTIVDALVEKAVEDLRQLKGITATYRMTNKPLPVRHSPYVSGVLRPLKTLLEGER 410 (527)
Q Consensus 336 ~~~~l~e~~~~L~~~~~~l~~~iv~~l~~~c~~~Lk~v~~Ip~~YR~Tnk~~Pt~~S~YV~~il~PL~~F~~~~~ 410 (527)
+.+.|.+.-..|..++.+++...++.+-..-.+..+++-+|-.+-|-|. ..-+..-+=.+.+|+||-.|+++.-
T Consensus 877 a~d~lk~lqvkln~vldels~~f~tsfqphi~e~v~qmg~il~qvkgt~-~a~~sva~dad~vl~plmdlldgnl 950 (1283)
T KOG1011|consen 877 AGDVLKELQVKLNSVLDELSAVFVTSFQPHIHECVIQMGDILVQVKGTG-LAKTSVAQDADAVLEPLMDLLDGNL 950 (1283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHhhhcccc-cchhhcccchHHHHHHHHHHHhchH
Confidence 3445555555566666666666666554444444555566666666554 2344455566899999999998753
No 20
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=31.49 E-value=57 Score=20.65 Aligned_cols=23 Identities=13% Similarity=0.223 Sum_probs=20.2
Q ss_pred HHHHHHHHhcChhhHHHHHHHHh
Q 009717 34 NCLRAYAAIDNTRNAEEIFCNTV 56 (527)
Q Consensus 34 ~cLr~Y~~ld~~~~aE~~~r~~v 56 (527)
..+++|+.-|+..+|.++|++..
T Consensus 5 ~li~~~~~~~~~~~a~~~~~~M~ 27 (35)
T TIGR00756 5 TLIDGLCKAGRVEEALELFKEML 27 (35)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 46889999999999999999863
No 21
>PHA00442 host recBCD nuclease inhibitor
Probab=30.39 E-value=83 Score=24.03 Aligned_cols=39 Identities=28% Similarity=0.330 Sum_probs=28.6
Q ss_pred HHHHHHHHH----HHHHHHHHhcCCCCCCCccHHHHHHhcccccc
Q 009717 481 ICMQLFLDI----QEYGRSLAALGVQAADIPPYRSLWQCVAPSDR 521 (527)
Q Consensus 481 Ir~QL~LDv----~~f~~~~~~lgv~~~~i~~~~~L~~~V~~~~~ 521 (527)
=-+|.|+|- ..|.+.+++.| +++++.|.+..++|+...+
T Consensus 16 nd~q~yidsLek~~~~L~~Lea~G--VDNW~Gy~eA~emv~~edd 58 (59)
T PHA00442 16 NDMQGYIDSLEKDNEFLKALRACG--VDNWDGYMDAVEMVAEEDD 58 (59)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHcC--CcchhhHHHHHHHHhhhcc
Confidence 345666653 45777778888 5789999999999987653
No 22
>PF01765 RRF: Ribosome recycling factor; InterPro: IPR023584 The ribosome recycling factor or ribosome release factor (RRF) dissociates ribosomes from mRNA after termination of translation, and is essential for bacterial growth []. Thus ribosomes are 'recycled' and ready for another round of protein synthesis. This entry represents a domain found in ribosome recycling factors.; PDB: 3R8N_Y 1Y69_8 1ISE_A 1EK8_A 1DD5_A 1WIH_A 2Z4L_6 2QBE_6 2V46_Y 1EH1_A ....
Probab=29.66 E-value=4.5e+02 Score=24.45 Aligned_cols=68 Identities=18% Similarity=0.231 Sum_probs=40.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccccCCCCCCCCCCCCCchHH--HHHHHHHHHHH
Q 009717 414 YLTPEAKNELLLDAATQITSRYHELAAELISVARKTESSLLKIRQGAQRRAGASSDVSDHNVSDTDK--ICMQLFLDIQE 491 (527)
Q Consensus 414 ~l~~e~~~~~~~~v~~~vt~~Y~~~~~evL~sv~KtEeSL~RLKk~~~~~~g~~~~~~~~~~sD~dK--Ir~QL~LDv~~ 491 (527)
.++.|.+++++.. +...++.|. .-|..+|+ +.++++|+..+. + .+|.||. ..-++.--.+.
T Consensus 86 ~~T~E~R~~l~k~-~k~~~E~~k----~~iR~iR~--~~~~~lkk~~~~--~--------~~s~D~~~~~~~~iq~l~~~ 148 (165)
T PF01765_consen 86 PPTEERRKELVKQ-AKKIAEEAK----VSIRNIRR--DAMKKLKKLKKS--K--------EISEDDIKKLEKEIQKLTDK 148 (165)
T ss_dssp SSSHHHHHHHHHH-HHHHHHHHH----HHHHHHHH--HHHHHHHHHHHT--T--------SS-HHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH-HHHHHHHHH----HHHHHHHH--HHHHHHHhhhcc--C--------CCCchhhHHHHHHHHHHHHH
Confidence 4566877776643 444555555 46777776 678888877651 1 1444444 55555556666
Q ss_pred HHHHHHh
Q 009717 492 YGRSLAA 498 (527)
Q Consensus 492 f~~~~~~ 498 (527)
|..+++.
T Consensus 149 ~~~~id~ 155 (165)
T PF01765_consen 149 YIKKIDE 155 (165)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7666654
No 23
>KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
Probab=29.22 E-value=27 Score=37.08 Aligned_cols=80 Identities=19% Similarity=0.377 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHhhHHHHHHhhhccCCCcccccchhccHHHHHHHHHhcCCccccCCCchHHHHHHHHHHHHHHHHHhhC
Q 009717 83 SDYEQIKQCVEKDCKFLLDISSAENSGLHVFDFLANSILKEVLSAIQKGKPGAFSPGRPTQFLRNYKSSLDFLAYLEGYC 162 (527)
Q Consensus 83 ~~y~~il~fi~~~~~~lleit~~~~~~~~~~dfl~nsvw~ev~~~l~~~l~~iFapG~Pd~F~~nY~~t~~Fl~~lE~~~ 162 (527)
++|+=|..=..++++-+-=|+ .=||-..+|.. ++-..|..=|+-|.|- ++|---.+||+++|.+|
T Consensus 27 ev~~ii~~Ek~RQ~~gieLIa--------SENFts~aVme----AlGS~ltNKYSEGyPG---~RYYGGne~ID~iE~LC 91 (477)
T KOG2467|consen 27 EVHDIIEKEKERQKRGIELIA--------SENFTSRAVME----ALGSCLTNKYSEGYPG---ARYYGGNEYIDQIELLC 91 (477)
T ss_pred HHHHHHHHHHHhhhcceeEee--------cccchHHHHHH----HHhHHhhcccccCCCc---ccccCcchHHHHHHHHH
Confidence 455555544555554432222 22355555554 5555666678889986 58889999999999999
Q ss_pred CCHHHHHHHhhchhHHHHHHhh
Q 009717 163 PSRSAVAKFRAEAIYVEFMKQW 184 (527)
Q Consensus 163 ~S~~~v~~lR~~~~y~~f~~rW 184 (527)
..+ ++..|+-.| .||
T Consensus 92 q~R-ALeaF~ldp------~kW 106 (477)
T KOG2467|consen 92 QKR-ALEAFGLDP------EKW 106 (477)
T ss_pred HHH-HHHHhCCCH------HHC
Confidence 865 677777666 689
No 24
>TIGR02957 SigX4 RNA polymerase sigma-70 factor, TIGR02957 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building and bidirectional best hits, to represent a conserved family. This family is found in a limited number of bacterial lineages. This family includes apparent paralogous expansion in Streptomyces coelicolor A3(2), and multiple copies in Mycobacterium smegmatis MC2, Streptomyces avermitilis MA-4680 and Nocardia farcinica IFM10152.
Probab=28.29 E-value=2.8e+02 Score=27.98 Aligned_cols=120 Identities=19% Similarity=0.228 Sum_probs=63.8
Q ss_pred HHHHhcChhhHHHHHHHHhhHHHHhhhcCCCCCccccCCCcchHHHH-HHHHHHHHHHhhHHHHHHhhhccCCCcccccc
Q 009717 38 AYAAIDNTRNAEEIFCNTVVAPLMQKIIPHGPSEALAGASGDELESD-YEQIKQCVEKDCKFLLDISSAENSGLHVFDFL 116 (527)
Q Consensus 38 ~Y~~ld~~~~aE~~~r~~vV~P~~~~ii~~~~~~~~~~~~~~~L~~~-y~~il~fi~~~~~~lleit~~~~~~~~~~dfl 116 (527)
+|..+|...+||+++.+++++ +... ..... .+-..=|-.+ .|.+++++.+.-. .. ..+.
T Consensus 14 a~r~lg~~~dAEDvvQE~flk-~~~~--~~~~~----~~~~awL~~Ia~n~~ld~lR~~~~--------~~---~~~~-- 73 (281)
T TIGR02957 14 AYRMLGSVADAEDIVQETFLR-WQEA--DRAQI----ENPKAYLTKVVTRRCIDVLRSARA--------RR---EVYV-- 73 (281)
T ss_pred HHHHhCCHhHHHHHHHHHHHH-HHhC--Ccccc----cCHHHHHHHHHHHHHHHHHHHhhh--------cc---cccC--
Confidence 456789999999999999999 6553 11111 1111222222 4555555433110 00 0010
Q ss_pred hhccHHHHHHHHHhcCCccccCCCch-HHHHHHHHHHHHHHHHHhhCCCHHHHHHHhhchhHHHHHHhhcchhhHHHHHH
Q 009717 117 ANSILKEVLSAIQKGKPGAFSPGRPT-QFLRNYKSSLDFLAYLEGYCPSRSAVAKFRAEAIYVEFMKQWNVGVYFSLRFQ 195 (527)
Q Consensus 117 ~nsvw~ev~~~l~~~l~~iFapG~Pd-~F~~nY~~t~~Fl~~lE~~~~S~~~v~~lR~~~~y~~f~~rWnLpVYFqlRfq 195 (527)
...++| ... -....|. ....+-.....+...|+.+.+.+..+-.|| .+|.+-++
T Consensus 74 -~~~~~e-------~~~--~~~~~~~~~~~~~e~~~~~l~~~l~~L~~~~R~v~~L~---------------~~~g~s~~ 128 (281)
T TIGR02957 74 -GPWLPE-------PLL--TTSADPAESVELAESLSMAYLLLLERLSPLERAVFVLR---------------EVFDYPYE 128 (281)
T ss_pred -CCCCCc-------ccC--CCCCChHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHH---------------HHcCCCHH
Confidence 011111 111 0112332 233333445567788888888887776665 46788899
Q ss_pred HHHHhHH
Q 009717 196 EIAGALD 202 (527)
Q Consensus 196 EIa~~lE 202 (527)
|||..|.
T Consensus 129 EIA~~lg 135 (281)
T TIGR02957 129 EIASIVG 135 (281)
T ss_pred HHHHHHC
Confidence 9998766
No 25
>PRK11032 hypothetical protein; Provisional
Probab=26.39 E-value=2.3e+02 Score=26.57 Aligned_cols=76 Identities=21% Similarity=0.285 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHhc-ccccCCCCCCCCCCCCC--chHHHHHHHHHHHHHHHHHHHhcCCCCCCCc
Q 009717 431 ITSRYHELAAELISVARKTESSLLKIRQG-AQRRAGASSDVSDHNVS--DTDKICMQLFLDIQEYGRSLAALGVQAADIP 507 (527)
Q Consensus 431 vt~~Y~~~~~evL~sv~KtEeSL~RLKk~-~~~~~g~~~~~~~~~~s--D~dKIr~QL~LDv~~f~~~~~~lgv~~~~i~ 507 (527)
+...|..++++|-...+..|+.++++=.. ++.... .+.+| .-+.|+.=|.-|+++|++..+.-|=+..+.+
T Consensus 4 ~~~~Y~~ll~~v~~~l~~~~~~l~~~ve~a~~~~~~------~~elT~dEl~lv~~ylkRDL~ef~~~~~~~~~~~~~s~ 77 (160)
T PRK11032 4 VAQYYRELVASLTERLRNGERDIDALVESARKRVDA------AGELTRDEVDLITRAVRRDLEEFARSYEESKEEFSDSV 77 (160)
T ss_pred HHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH------HHhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccccH
Confidence 44556666666655566656555555221 111000 11244 3456999999999999999887776666666
Q ss_pred cHHHH
Q 009717 508 PYRSL 512 (527)
Q Consensus 508 ~~~~L 512 (527)
-+..+
T Consensus 78 ~~~~i 82 (160)
T PRK11032 78 FMRVI 82 (160)
T ss_pred HHHHH
Confidence 55443
No 26
>PF08397 IMD: IRSp53/MIM homology domain; InterPro: IPR013606 The IMD (IRSp53 and MIM (missing in metastases) homology) domain is a BAR-like domain of approximately 250 amino acids found at the N-terminal in the insulin receptor tyrosine kinase substrate p53 (IRSp53) and in the evolutionarily related IRSp53/MIM family. In IRSp53, a ubiquitous regulator o the actin cytoskeleton, the IMD domain acts as conserved F-actin bundling domain involved in filopodium formation. Filopodium-inducing IMD activity is regulated by Cdc42 and Rac1 (Rho-family GTPases) and is SH3-independent [, , ]. The IRSp53/MIM family is a novel F-actin bundling protein family that includes invertebrate relatives: Vertebrate MIM (missing in metastasis), an actin-binding scaffold protein that may be involved in cancer metastasis. Vertebrate ABBA-1, a MIM-related protein. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2 (BAI1-associated protein 2) or insulin receptor tyrosine kinase substrate p53 (IRSp53), a multifunctional adaptor protein that links Rac1 with a Wiskott-Aldrich syndrome family verprolin-homologous protein 2 (WAVE2) to induce lamellipodia or Cdc42 with Mena to induce filopodia []. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2-like proteins 1 and 2 (BAI1-associated protein 2-like proteins 1 and 2). Drosophila melanogaster (Fruit fly) CG32082-PA. Caenorhabditis elegans M04F3.5 protein. The vertebrate IRSp53/MIM family is divided into two major groups: the IRSp53 subfamily and the MIM/ABBA subfamily. The putative invertebrate homologues are positioned between them. The IRSp53 subfamily members contain an SH3 domain, and the MIM/ABBA subfamily proteins contain a WH2 (WASP-homology 2) domain. The vertebrate SH3-containing subfamily is further divided into three groups according to the presence or absence of the WWB and the half-CRIB motif. The IMD domain can bind to and bundle actin filaments, bind to membranes and interact with the small GTPase Rac [, ]. The IMD domain folds as a coiled coil of three extended alpha-helices and a shorter C-terminal helix. Helix 4 packs tightly against the other three helices, and thus represents an integral part of the domain. The fold of the IMD domain closely resembles that of the BAR (Bin-Amphiphysin-RVS) domain, a functional module serving both as a sensor and inducer of membrane curvature []. The WH2 domain performs a scaffolding function [].; GO: 0008093 cytoskeletal adaptor activity, 0017124 SH3 domain binding, 0007165 signal transduction, 0046847 filopodium assembly; PDB: 2D1L_A 3OK8_B 1WDZ_B 1Y2O_A 2YKT_A.
Probab=25.99 E-value=2.1e+02 Score=27.85 Aligned_cols=53 Identities=26% Similarity=0.405 Sum_probs=40.6
Q ss_pred chHhhhHhHHHHHhccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccc
Q 009717 394 YVSGVLRPLKTLLEGERAMTYLTPEAKNELLLDAATQITSRYHELAAELISVARKTESSLLKIRQGAQ 461 (527)
Q Consensus 394 YV~~il~PL~~F~~~~~~~~~l~~e~~~~~~~~v~~~vt~~Y~~~~~evL~sv~KtEeSL~RLKk~~~ 461 (527)
+-..++.||....+.+. +++....++|....+.--...+|.+.-++|++|+++
T Consensus 81 ~~~~li~pLe~~~e~d~---------------k~i~~~~K~y~ke~k~~~~~l~K~~se~~Kl~KK~~ 133 (219)
T PF08397_consen 81 FHSELIQPLEKKLEEDK---------------KYITQLEKDYEKEYKRKRDELKKAESELKKLRKKSR 133 (219)
T ss_dssp HHHHTHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHHHHH---------------HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 44567888877776442 345667788888888888899999999999998876
No 27
>KOG2180 consensus Late Golgi protein sorting complex, subunit Vps53 [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.86 E-value=1.2e+03 Score=27.37 Aligned_cols=255 Identities=17% Similarity=0.167 Sum_probs=119.8
Q ss_pred hHHHHHHHHHHHHHHHHHhhCCC--------HHHHH-HHhhchhHHHHHHhh--cchhhHHHHHHHHHHhHHHhhhhccc
Q 009717 142 TQFLRNYKSSLDFLAYLEGYCPS--------RSAVA-KFRAEAIYVEFMKQW--NVGVYFSLRFQEIAGALDSALTAASL 210 (527)
Q Consensus 142 d~F~~nY~~t~~Fl~~lE~~~~S--------~~~v~-~lR~~~~y~~f~~rW--nLpVYFqlRfqEIa~~lE~~L~~~~~ 210 (527)
+.|.---..|.+|=..|+...+. ..+.. .=-..+-+....+.| .|-+|+..-=++...-||.-.+.+..
T Consensus 319 ~lll~Alq~TleFE~~L~kRF~g~~~~~~~~~ns~~~~k~~~~f~~~isScFEPhLtlyI~~qek~l~ellek~v~e~~~ 398 (793)
T KOG2180|consen 319 KLLLFALQSTLEFEKFLDKRFSGGTLTGKPEKNSQFEPKERFNFEGAISSCFEPHLTLYIESQEKELSELLEKFVSEEKW 398 (793)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccccccccccchhhHHHHhcccchhhhhhHHHHHHHHHHHHHHhhhcc
Confidence 55666667777777777764421 11100 000012244444555 68899999999999999998874433
Q ss_pred ccccCCCCCCCCCcccchhhHHHHHHHHhhhcccCccccccchHHHHHHH---HHHHHHHHHHhhhhhcccCCCCCCCCC
Q 009717 211 APVQNSNSNQGNSQALTLKQSVTLLDSMKSCWRQDVFLLPCSDKFLRLSL---QLLSRYSNWLSSGLAARSSGHASFNPG 287 (527)
Q Consensus 211 ~~~~~~~~~~~~~~~f~l~~s~~l~~~l~~cWs~~Vfl~~L~~rFwkLtL---QllsRy~~wi~~~~~~~~~~~~~~~~~ 287 (527)
...+. . ..+...-.++.|.-++.+.++|-..-.=|..=.+--..+.. .-+++|+.=|-.+. -+.+++...+
T Consensus 399 ~~~p~-~--~~~~~s~vlpSsadlF~~Ykkcltq~~~Ls~n~dpl~~~~~~f~k~LreYa~kil~~~---lP~~t~~s~g 472 (793)
T KOG2180|consen 399 DGEPK-S--NTDEESLVLPSSADLFVAYKKCLTQCSELSENNDPLIALLAVFSKWLREYAQKILLGN---LPDTTSSSDG 472 (793)
T ss_pred CCCCC-C--CcccccccCccHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHhhcc---CCcccccccC
Confidence 21111 1 12223567788899999999998722222111122233333 33445543332222 1111222111
Q ss_pred Ccc----------cccCChhHHHHHHHHHHHHHHHhhhhHHHHHHHHhccCChhhHHHHH-HHHHhhchhhhcchhHHHH
Q 009717 288 NEW----------AISAAPDDFIYIIHDINCLATEVSGDYLTHVLQLLSSCSSEVLDLVK-QSILEGGKSLSSMLPVVIN 356 (527)
Q Consensus 288 ~~~----------~~~~~~~~lv~l~~Di~~L~~~i~~~~~~~I~~~l~~~~~~~~~~~~-~~l~e~~~~L~~~~~~l~~ 356 (527)
... .+..+++++.-+..=.... .++.. .......+|...... ..+. -++.+..+......-....
T Consensus 473 ~~v~~l~~~e~~~~~~~t~d~l~di~~~lst~-e~~~~-tt~qle~kl~e~~~~--~~~~~vs~s~~r~~~~~~~~~s~q 548 (793)
T KOG2180|consen 473 AAVYLLLRIEGAEYCRFTIDQLLDICCILSTA-EYCLA-TTIQLEKKLKEIVDA--SYIKGVSFSEEREVFSSKISVSLQ 548 (793)
T ss_pred chhhhHHHhhhhhhhcccHHHHHHHHHHHHHH-HHHHH-HHHHHHHHHHHHHHH--HHhhhcchHHHHHHHHHHHhhhHH
Confidence 000 0011112222111111111 11111 000001111100000 0000 0011111111112222335
Q ss_pred HHHHHHHHHHHHHhhhhccchhhhhccCCCCCCCCCcchHhhhHhHHHHHhccc
Q 009717 357 TIVDALVEKAVEDLRQLKGITATYRMTNKPLPVRHSPYVSGVLRPLKTLLEGER 410 (527)
Q Consensus 357 ~iv~~l~~~c~~~Lk~v~~Ip~~YR~Tnk~~Pt~~S~YV~~il~PL~~F~~~~~ 410 (527)
.+|+.+.+.|...|..+.-. ||+|=.--+.-|+||+++..-+.+|.-...
T Consensus 549 ~lv~D~e~a~~~~lt~msk~----~~~~l~~vgDQss~v~s~~~h~~q~~~~i~ 598 (793)
T KOG2180|consen 549 FLVQDLENALDPDLTPMSKM----QWQNLEGVGDQSSYVSSLNFHLSQFVPLIR 598 (793)
T ss_pred HHHHHHHHhhCcccChHHHH----HHHHhcCccccchhhHHHHHHHHhhhHHHH
Confidence 68889999999888876543 388777777999999999888888875443
No 28
>KOG3048 consensus Molecular chaperone Prefoldin, subunit 5 [Posttranslational modification, protein turnover, chaperones]
Probab=24.46 E-value=3.2e+02 Score=25.29 Aligned_cols=79 Identities=19% Similarity=0.239 Sum_probs=47.5
Q ss_pred HHHHHHHhhhhccchhhhhccCCC--CCCCCCcchHhhhHhHHHHHhccccccCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 009717 363 VEKAVEDLRQLKGITATYRMTNKP--LPVRHSPYVSGVLRPLKTLLEGERAMTYLTPEAKNELLLDAATQITSRYHELAA 440 (527)
Q Consensus 363 ~~~c~~~Lk~v~~Ip~~YR~Tnk~--~Pt~~S~YV~~il~PL~~F~~~~~~~~~l~~e~~~~~~~~v~~~vt~~Y~~~~~ 440 (527)
.++|...|.-++ -++-+|. +|-..|-||++=|.-...|+-+.+.+=++.. -.++..+.|...++
T Consensus 46 ~~~~~~aln~~~-----~~~eGk~~LVPLTsSlYVPGkl~d~~k~lVDIGTGYyVEK---------~~e~akdyfkRKve 111 (153)
T KOG3048|consen 46 YEESIAALNDVQ-----AANEGKKLLVPLTSSLYVPGKLSDNSKFLVDIGTGYYVEK---------DAEDAKDYFKRKVE 111 (153)
T ss_pred HHHHHHHHhhcc-----cCCCCCeEEEecccceeccceeccccceeEeccCceEEee---------chHHHHHHHHHHHH
Confidence 345666666322 2455676 8999999999999999999876555413321 12333344444444
Q ss_pred HHHHHHHHhHHHHHH
Q 009717 441 ELISVARKTESSLLK 455 (527)
Q Consensus 441 evL~sv~KtEeSL~R 455 (527)
=+-..+.+.|.-++.
T Consensus 112 ~l~kq~e~i~~i~~e 126 (153)
T KOG3048|consen 112 YLTKQIEQIEGILKE 126 (153)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444456666666654
No 29
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=24.41 E-value=73 Score=22.35 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=19.2
Q ss_pred HHHHHHHHhcChhhHHHHHHHHh
Q 009717 34 NCLRAYAAIDNTRNAEEIFCNTV 56 (527)
Q Consensus 34 ~cLr~Y~~ld~~~~aE~~~r~~v 56 (527)
.-=++|...|+..+|++++++.+
T Consensus 6 ~la~~~~~~G~~~~A~~~~~~~l 28 (44)
T PF13428_consen 6 ALARAYRRLGQPDEAERLLRRAL 28 (44)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Confidence 33478899999999999999865
No 30
>PF08287 DASH_Spc19: Spc19; InterPro: IPR013251 Spc19 is a component of the DASH complex. The DASH complex associates with the spindle pole body and is important for spindle and kinetochore integrity during cell division [, ].
Probab=23.04 E-value=2.5e+02 Score=26.04 Aligned_cols=17 Identities=12% Similarity=0.264 Sum_probs=9.5
Q ss_pred HHHHHHHhhh-hccchhh
Q 009717 363 VEKAVEDLRQ-LKGITAT 379 (527)
Q Consensus 363 ~~~c~~~Lk~-v~~Ip~~ 379 (527)
.+.|...|+. +.+.||+
T Consensus 16 L~~Si~~L~~~~~D~pRL 33 (153)
T PF08287_consen 16 LQSSIETLDSGTSDFPRL 33 (153)
T ss_pred HHHHHHHHHhcCcccHHH
Confidence 3456666665 5555554
No 31
>PF08154 NLE: NLE (NUC135) domain; InterPro: IPR012972 This domain is located N-terminal to WD40 repeats(IPR001680 from INTERPRO). It is found in the microtubule-associated protein Q12024 from SWISSPROT [].
Probab=21.70 E-value=64 Score=25.32 Aligned_cols=39 Identities=23% Similarity=0.322 Sum_probs=27.4
Q ss_pred CCcchHHHHHHHHHHHHHHhhHHHHHHhhhccCCCcccccchhccHHHHHHHHHhc
Q 009717 76 ASGDELESDYEQIKQCVEKDCKFLLDISSAENSGLHVFDFLANSILKEVLSAIQKG 131 (527)
Q Consensus 76 ~~~~~L~~~y~~il~fi~~~~~~lleit~~~~~~~~~~dfl~nsvw~ev~~~l~~~ 131 (527)
.+..+|..+-|+++ ......-.|||++|.. ++...|.+.
T Consensus 26 ~t~~~Ls~LvN~LL---------------~~~~~~vpfdF~i~~~--~lr~sL~~~ 64 (65)
T PF08154_consen 26 ITRKELSELVNQLL---------------DDEEEPVPFDFLINGE--ELRTSLEEH 64 (65)
T ss_pred CCHHHHHHHHHHHh---------------ccCCCCCcEEEEECCE--EeechHHHh
Confidence 46688999988877 1233456899999985 666666554
No 32
>PF15151 RGCC: Response gene to complement 32 protein family
Probab=21.66 E-value=1.6e+02 Score=26.01 Aligned_cols=34 Identities=12% Similarity=0.297 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----hHHHHHHHHhccc
Q 009717 428 ATQITSRYHELAAELISVARK----TESSLLKIRQGAQ 461 (527)
Q Consensus 428 ~~~vt~~Y~~~~~evL~sv~K----tEeSL~RLKk~~~ 461 (527)
+.++...|...+.|.-.-+.+ -++=|+++||+..
T Consensus 21 L~d~L~EFd~Vvedf~sP~~~r~f~Y~ehL~~mKRrs~ 58 (121)
T PF15151_consen 21 LSDLLCEFDAVVEDFSSPAEKRHFRYDEHLEEMKRRSS 58 (121)
T ss_pred HHHHHHHHHHHHHHhcCchhhccchHHHHHHHHHHhcC
Confidence 455666777766666444555 4889999998763
No 33
>KOG3725 consensus SH3 domain protein SH3GLB [Signal transduction mechanisms]
Probab=20.80 E-value=1.7e+02 Score=29.51 Aligned_cols=99 Identities=18% Similarity=0.295 Sum_probs=0.0
Q ss_pred hhhHhHHHHHhccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHhcccccCCCCCCCCCCCC
Q 009717 397 GVLRPLKTLLEGERAMTYLTPEAKNELLLDAATQITSRYHELAAELISVAR-KTESSLLKIRQGAQRRAGASSDVSDHNV 475 (527)
Q Consensus 397 ~il~PL~~F~~~~~~~~~l~~e~~~~~~~~v~~~vt~~Y~~~~~evL~sv~-KtEeSL~RLKk~~~~~~g~~~~~~~~~~ 475 (527)
+.|.||+.|++++.. .+..|.+ +|.+-+ -...-=.||||.+....-+...+...+.
T Consensus 139 nfLtPlRnFlEGD~K--TI~KERk---------------------lLqnkRLDLDAcKsRLKKAKaae~q~~rN~~~s~~ 195 (375)
T KOG3725|consen 139 NFLTPLRNFLEGDMK--TIQKERK---------------------LLQNKRLDLDACKSRLKKAKAAELQTVRNSKTSGG 195 (375)
T ss_pred HhHHHHHHHhhccHH--HHHHHHH---------------------HHhhcccChHHHHHHHHHhhhhhhhccccccccCc
Q ss_pred CchHHHHHHHHHHHHHHHHHHH--hc---CCCCCCCccHHHHHHhccc
Q 009717 476 SDTDKICMQLFLDIQEYGRSLA--AL---GVQAADIPPYRSLWQCVAP 518 (527)
Q Consensus 476 sD~dKIr~QL~LDv~~f~~~~~--~l---gv~~~~i~~~~~L~~~V~~ 518 (527)
-.-|+--.-|..--.+|-+|.+ +| |+.......++-|.++|++
T Consensus 196 ~~ie~aEqelRvaQ~EFDrQaEiTrLLLEGIsstH~nhLrCL~dFVea 243 (375)
T KOG3725|consen 196 FTIEQAEQELRVAQAEFDRQAEITRLLLEGISSTHNNHLRCLRDFVEA 243 (375)
T ss_pred chHhHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHH
No 34
>cd07356 HN_L-whirlin_R1_like First harmonin_N_like domain (repeat 1) of the long isoform of whirlin, and related domains. This subgroup contains the first of two harmonin_N_like domains of the long isoform of whirlin, and related domains. Whirlin is a postsynaptic density-95/discs-large/ZO-1 (PDZ) domain-containing scaffold protein which binds various components of the Usher protein network of the inner ear and the retina: erythrocyte protein p55, usherin, VlGR1, and myosin XVa. The long isoform of whirlin contains two harmonin_N_like domains, and three PDZ protein-binding domains, PDZ1-3. This first harmonin_N_like domain precedes PDZ1, and is a putative protein-binding module based on its sequence similarity to the N-terminal domain of harmonin. This first harmonin_N_like domain has been assayed for interaction with the cytoplasmic domain of cadherin 23 (a component of the Usher network and an interacting partner of the harmonin N-domain), however no interaction could be detected. Th
Probab=20.42 E-value=3.5e+02 Score=22.23 Aligned_cols=50 Identities=24% Similarity=0.476 Sum_probs=31.6
Q ss_pred HHHHHHhHHHHhhhccCCHHHHHHHHHHHHHhcChhhHHHHHHH---Hh-------hHHHHhhhcCC
Q 009717 11 LLDASLGHCFVHGLEHQNANVIYNCLRAYAAIDNTRNAEEIFCN---TV-------VAPLMQKIIPH 67 (527)
Q Consensus 11 ~L~~~L~~~f~~~l~~~~~~~L~~cLr~Y~~ld~~~~aE~~~r~---~v-------V~P~~~~ii~~ 67 (527)
.|+..|...|.+ ...+...|||-.|-.= ++.+.+++. ++ +-|++.++|+.
T Consensus 7 ~lh~~l~~lLs~----~Er~~f~h~Ln~Y~~~---RnV~~Lv~sL~~vLd~P~KrqllplLr~vIP~ 66 (78)
T cd07356 7 RLHNALTKLLSE----AEREEFIHCLNDYHAK---RNVYDLVQSLKVVLDTPEKRQLLPLLRLVIPR 66 (78)
T ss_pred HHHHHHHHHccH----HHHHHHHHHHHHHHhc---ccHHHHHHHHHHHhCCHhHhHHHHHHHHHccc
Confidence 355556555543 4457889999999754 444555543 22 45888888875
Done!