Query 009717
Match_columns 527
No_of_seqs 129 out of 160
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 11:27:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009717.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009717hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a2f_X Exocyst complex compone 96.9 0.34 1.2E-05 49.1 25.1 107 378-517 204-314 (325)
2 3n1e_A Vacuolar protein sortin 94.6 0.98 3.3E-05 40.1 14.4 123 347-513 17-140 (141)
3 3swh_A MUNC13-1, protein UNC-1 86.4 7.8 0.00027 39.3 13.1 72 229-315 63-134 (341)
4 2fji_1 Exocyst complex compone 80.9 53 0.0018 33.6 20.2 160 296-501 136-295 (399)
5 4dnd_A Syntaxin-10, SYN10; str 20.7 2.8E+02 0.0094 23.8 7.2 62 431-499 25-86 (130)
6 3clj_A Protein NRD1; CTD-inter 20.2 77 0.0026 28.3 3.7 65 340-404 6-74 (157)
7 3twe_A Alpha4H; unknown functi 18.8 1.3E+02 0.0044 18.1 3.2 21 441-461 5-25 (27)
8 4fye_A SIDF, inhibitor of grow 18.1 2.1E+02 0.0072 28.9 6.5 82 371-459 49-158 (761)
9 4dra_E Centromere protein X; D 17.7 1.9E+02 0.0065 23.0 5.0 77 384-488 7-83 (84)
10 1wqg_A Ribosome recycling fact 17.1 5.8E+02 0.02 23.1 9.8 68 414-498 104-173 (185)
No 1
>2a2f_X Exocyst complex component SEC15; all helical structure, protein transport; 2.50A {Drosophila melanogaster}
Probab=96.92 E-value=0.34 Score=49.09 Aligned_cols=107 Identities=15% Similarity=0.162 Sum_probs=74.8
Q ss_pred hhhhccCCCCCCCCCcchHhhhHhHHHHHhccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 009717 378 ATYRMTNKPLPVRHSPYVSGVLRPLKTLLEGERAMTYLTPEAKNELLLDAATQITSRYHELAAELISVARKTESSLLKIR 457 (527)
Q Consensus 378 ~~YR~Tnk~~Pt~~S~YV~~il~PL~~F~~~~~~~~~l~~e~~~~~~~~v~~~vt~~Y~~~~~evL~sv~KtEeSL~RLK 457 (527)
.-|=|+-.++|++||.|+..++.=|+.-... -. .||.++++.+..+++++++++..+. | +++..||+
T Consensus 204 a~yDW~~~~~~~~ps~yi~dli~fL~~~f~s-l~--~LP~~v~~~~~~~a~~his~~l~~~----L-----l~~~vk~i- 270 (325)
T 2a2f_X 204 SAYDWLLVEPPGIASAFITDMISYLKSTFDS-FA--FKLPHIAQAACRRTFEHIAEKIYSI----M-----YDEDVKQI- 270 (325)
T ss_dssp CCTTCC----CCSCCHHHHHHHHHHHHHHHT-TT--TTSHHHHHHHHHHHHHHHHHHHHHH----H-----TC-------
T ss_pred cccCCCCCCCCCCccHHHHHHHHHHHHHHHH-HH--cCCHHHHHHHHHHHHHHHHHHHHHH----h-----cCcchhhc-
Confidence 4577998899999999999999999988773 33 7999999999999999999999884 3 23444443
Q ss_pred hcccccCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhcCCCC----CCCccHHHHHHhcc
Q 009717 458 QGAQRRAGASSDVSDHNVSDTDKICMQLFLDIQEYGRSLAALGVQA----ADIPPYRSLWQCVA 517 (527)
Q Consensus 458 k~~~~~~g~~~~~~~~~~sD~dKIr~QL~LDv~~f~~~~~~lgv~~----~~i~~~~~L~~~V~ 517 (527)
.. + | =.|+-+||.++..-+.+.+++. .=-..|.+|.++|.
T Consensus 271 --n~---~--------a-------v~~~~~Dv~~lE~fa~~~~v~~l~~~~L~~~F~eLrQli~ 314 (325)
T 2a2f_X 271 --ST---G--------A-------LTQINLDLMQCEFFAASEPVPGLKEGELSKYFLRNRQLLD 314 (325)
T ss_dssp --CC---T--------T-------HHHHHHHHHHHHHHHTTCSSSSCCSSTTGGGGHHHHHHHH
T ss_pred --CH---H--------H-------HHHHHHHHHHHHHHHHhCCCCCcccchHHHHHHHHHHHHH
Confidence 11 1 1 2589999999999998866542 12267788877763
No 2
>3n1e_A Vacuolar protein sorting-associated protein 54; spinal muscular atrophy, vesicle trafficking, golgi apparatu tethering complex, GARP.; 1.70A {Mus musculus} PDB: 3n1b_A
Probab=94.64 E-value=0.98 Score=40.13 Aligned_cols=123 Identities=18% Similarity=0.264 Sum_probs=79.2
Q ss_pred hhcchhHHHHHHHHHHHHHHHHHhhhhccchhhhhccCCCCCCCCCcchHhhhHhHHHHHhccccccCCCHHHHHHHHHH
Q 009717 347 LSSMLPVVINTIVDALVEKAVEDLRQLKGITATYRMTNKPLPVRHSPYVSGVLRPLKTLLEGERAMTYLTPEAKNELLLD 426 (527)
Q Consensus 347 L~~~~~~l~~~iv~~l~~~c~~~Lk~v~~Ip~~YR~Tnk~~Pt~~S~YV~~il~PL~~F~~~~~~~~~l~~e~~~~~~~~ 426 (527)
.+.+...|.+-+|+++.++...+|+ -|-.| +| -||+|+.++.+-+.++.+.-.. .||++.++.++..
T Consensus 17 y~eH~~eI~~KLv~Im~~r~~~~l~---------~Wd~k-~p-vpS~~m~tl~Ke~~kLH~~Ls~--~LP~~~v~~Im~~ 83 (141)
T 3n1e_A 17 YHDHIAEISAKLVAIMDSLFDKLLS---------KYEVK-AP-VPSPCFRNICKQMTKMHEAIFD--LLPEEQTQMLFLR 83 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---------TCCCC-SS-SSCHHHHHHHHHHHHHHHHHTT--TSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---------HhccC-CC-CCCHHHHHHHHHHHHHHHHHHh--hCCHHHHHHHHHH
Confidence 3445556667777777777776665 26665 33 7999999999999999987655 8999887766655
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccccCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhc-CCCCCC
Q 009717 427 AATQITSRYHELAAELISVARKTESSLLKIRQGAQRRAGASSDVSDHNVSDTDKICMQLFLDIQEYGRSLAAL-GVQAAD 505 (527)
Q Consensus 427 v~~~vt~~Y~~~~~evL~sv~KtEeSL~RLKk~~~~~~g~~~~~~~~~~sD~dKIr~QL~LDv~~f~~~~~~l-gv~~~~ 505 (527)
| ...|...- -+.+.++- - -+|..+=+.=+.-||++|...+++| |+.-.+
T Consensus 84 V----f~~fk~~l----------~~~~~~~~--------i--------~~~~G~q~g~v~~Dv~ff~~~L~~L~g~~d~~ 133 (141)
T 3n1e_A 84 I----NASYKLHL----------KKQLSHLN--------V--------INDGGPQNGLVTADVAFYTGNLQALKGLKDLD 133 (141)
T ss_dssp H----HHHHHHHH----------HHHHHHTT--------C--------CSSSSHHHHHHHHHHHHHHHHHHTSTTCTTCC
T ss_pred H----HHHHHHHH----------HHHHHHcC--------C--------CCCCcccchHHHHHHHHHHHHhcccCCCCccc
Confidence 5 45565522 23344431 0 1123333323678999999999999 554434
Q ss_pred CccHHHHH
Q 009717 506 IPPYRSLW 513 (527)
Q Consensus 506 i~~~~~L~ 513 (527)
.. +.++|
T Consensus 134 l~-~~~iw 140 (141)
T 3n1e_A 134 LN-MAEIW 140 (141)
T ss_dssp CC-GGGGG
T ss_pred cc-HHhhc
Confidence 33 44444
No 3
>3swh_A MUNC13-1, protein UNC-13 homolog A; alpha helical, neurotransmitter release, snare motif, exocyt; 2.65A {Rattus norvegicus}
Probab=86.36 E-value=7.8 Score=39.35 Aligned_cols=72 Identities=13% Similarity=0.175 Sum_probs=49.8
Q ss_pred hhHHHHHHHHhhhcccCccccccchHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCCCcccccCChhHHHHHHHHHHH
Q 009717 229 KQSVTLLDSMKSCWRQDVFLLPCSDKFLRLSLQLLSRYSNWLSSGLAARSSGHASFNPGNEWAISAAPDDFIYIIHDINC 308 (527)
Q Consensus 229 ~~s~~l~~~l~~cWs~~Vfl~~L~~rFwkLtLQllsRy~~wi~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~l~~Di~~ 308 (527)
.+....|..| =|.|..-...+.-||-+-.-..+..|+.-+.......... ...+.++.++.+++.
T Consensus 63 ~Q~~~~~~~L--~WpD~~~~~~f~t~l~~~i~~~~~~Y~~~l~~~~~~~~~~-------------e~~~~~Cv~lNNie~ 127 (341)
T 3swh_A 63 NQSFEIIKKL--ECPDPQIVGHYMRRFAKTISNVLLQYADIVSKDFASYCSK-------------EKEKVPCILMNNTQQ 127 (341)
T ss_dssp HHHHHHHHHS--CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCT-------------TSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-------------hcccchhhhcccHHH
Confidence 4455555555 4778777777888899999999999998887665542210 012457888899888
Q ss_pred HHHHhhh
Q 009717 309 LATEVSG 315 (527)
Q Consensus 309 L~~~i~~ 315 (527)
+...+..
T Consensus 128 lR~~L~~ 134 (341)
T 3swh_A 128 LRVQLEK 134 (341)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776665
No 4
>2fji_1 Exocyst complex component SEC6; exocytosis, tandem helical bundles, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=80.88 E-value=53 Score=33.58 Aligned_cols=160 Identities=7% Similarity=0.020 Sum_probs=87.7
Q ss_pred hhHHHHHHHHHHHHHHHhhhhHHHHHHHHhccCChhhHHHHHHHHHhhchhhhcchhHHHHHHHHHHHHHHHHHhhhhcc
Q 009717 296 PDDFIYIIHDINCLATEVSGDYLTHVLQLLSSCSSEVLDLVKQSILEGGKSLSSMLPVVINTIVDALVEKAVEDLRQLKG 375 (527)
Q Consensus 296 ~~~lv~l~~Di~~L~~~i~~~~~~~I~~~l~~~~~~~~~~~~~~l~e~~~~L~~~~~~l~~~iv~~l~~~c~~~Lk~v~~ 375 (527)
.+.++++..|+....+.+.. +.+.+.+. ...+....+...+.+..+.+..+.......+++.+...+...++ .
T Consensus 136 ~e~liA~~Nn~~~~~e~~~~-l~~~~~~~---~~~~~~~~~~~~l~~~~~~f~~l~~~~~~~L~~~if~dl~p~~~---~ 208 (399)
T 2fji_1 136 VEYLIAVSNDQMKAADYAVA-ISSKYGKL---VSKVYEKQITNHLEGTLDGFAEVAQCSSLGLITLMFDDLRKPYQ---E 208 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHHHHTT---SCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTHHHHT---T
T ss_pred HHhhhhhhccHHHHHHHHHH-HHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H
Confidence 57799999999877665444 33333222 22222222233344433333333333333333333332222221 1
Q ss_pred chhhhhccCCCCCCCCCcchHhhhHhHHHHHhccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 009717 376 ITATYRMTNKPLPVRHSPYVSGVLRPLKTLLEGERAMTYLTPEAKNELLLDAATQITSRYHELAAELISVARKTESSLLK 455 (527)
Q Consensus 376 Ip~~YR~Tnk~~Pt~~S~YV~~il~PL~~F~~~~~~~~~l~~e~~~~~~~~v~~~vt~~Y~~~~~evL~sv~KtEeSL~R 455 (527)
+ | |++=.- +.+|..|+.-+..|....+. ++.+...+.++..+.+.+..+|... |.+
T Consensus 209 l---f--t~~W~~---~~~v~~i~~ti~dy~~d~~~--~L~~~~~~~l~~~~~~~~v~~Yl~~--------------l~~ 264 (399)
T 2fji_1 209 I---F--SKTWYM---GSQAQQIADTLDEYLLDIKP--QMNSVLFVNFIDNVIGETIIKFLTA--------------LSF 264 (399)
T ss_dssp T---T--SGGGTT---CCHHHHHHHHHHHHHHHHGG--GSCHHHHHHHHHHHHHHHHHHHHHG--------------GGG
T ss_pred h---C--CchhcC---CcHHHHHHHHHHHHHHHHHH--HhChHHHHHHHHHHHHHHHHHHHHH--------------Hhc
Confidence 1 1 111111 11899999999999988765 7999989899999999988888862 221
Q ss_pred HHhcccccCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhcCC
Q 009717 456 IRQGAQRRAGASSDVSDHNVSDTDKICMQLFLDIQEYGRSLAALGV 501 (527)
Q Consensus 456 LKk~~~~~~g~~~~~~~~~~sD~dKIr~QL~LDv~~f~~~~~~lgv 501 (527)
|.+=+ + . ....-.||..|++.+.....+++-
T Consensus 265 -~~~~~------~------~--~~~~~~~l~~D~~~l~~~f~~~~~ 295 (399)
T 2fji_1 265 -EHSFK------N------K--NNKFLEAMKRDFEIFYQLFVKVLD 295 (399)
T ss_dssp -CCCCC------C------G--GGHHHHHHHHHHHHHHHHHHHHTT
T ss_pred -CCCCC------c------h--hHHHHHHHHHHHHHHHHHHHHhcc
Confidence 10000 0 0 234556677777777777777764
No 5
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=20.69 E-value=2.8e+02 Score=23.78 Aligned_cols=62 Identities=11% Similarity=0.073 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHhcccccCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhc
Q 009717 431 ITSRYHELAAELISVARKTESSLLKIRQGAQRRAGASSDVSDHNVSDTDKICMQLFLDIQEYGRSLAAL 499 (527)
Q Consensus 431 vt~~Y~~~~~evL~sv~KtEeSL~RLKk~~~~~~g~~~~~~~~~~sD~dKIr~QL~LDv~~f~~~~~~l 499 (527)
..+=|+....||..++.+++.-..+-.+.+.. ++++ + --+-+-.+-+|.-.++....+++.|
T Consensus 25 ~~DPF~~Vk~EVq~sl~~l~~l~~~w~~l~~~--~~~~-s----~~E~~~~~~EL~~~l~sie~dLeDL 86 (130)
T 4dnd_A 25 LEDPFFVVRGEVQKAVNTARGLYQRWCELLQE--SAAV-G----REELDWTTNELRNGLRSIEWDLEDL 86 (130)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcc--CCCc-c----hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34669999999999999999998887766642 1111 0 1133445666666555555555444
No 6
>3clj_A Protein NRD1; CTD-interacting domain, nucleus, phosphoprotein, RNA polymer binding protein, RNA binding protein; 2.10A {Saccharomyces cerevisiae}
Probab=20.25 E-value=77 Score=28.33 Aligned_cols=65 Identities=11% Similarity=0.098 Sum_probs=44.4
Q ss_pred HHhhchhhhcchhHHHHHHHHHHHHHHHHHhhhhccc-hhhhhccCCCCCCC--CCcc-hHhhhHhHHH
Q 009717 340 ILEGGKSLSSMLPVVINTIVDALVEKAVEDLRQLKGI-TATYRMTNKPLPVR--HSPY-VSGVLRPLKT 404 (527)
Q Consensus 340 l~e~~~~L~~~~~~l~~~iv~~l~~~c~~~Lk~v~~I-p~~YR~Tnk~~Pt~--~S~Y-V~~il~PL~~ 404 (527)
++..+++|.++.|.++..-+..|+.-|.++.+.-+.| ...|+.-.|.+|+. |+-| |++|++-.+.
T Consensus 6 f~~~L~sL~~lkp~iS~skI~~LT~~A~~nv~~~~~iv~~l~~~ikk~p~~hKL~~LYVvDSIvR~~~~ 74 (157)
T 3clj_A 6 FVATLESFKDLKSGISGSRIKKLTTYALDHIDIESKIISLIIDYSRLCPDSHKLGSLYIIDSIGRAYLD 74 (157)
T ss_dssp HHHHHHGGGGCSSSCCHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhCCCcceeeeeeehHHHHHHHHH
Confidence 3444555666668899999999999999988887766 56777665545543 2444 4777766543
No 7
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=18.84 E-value=1.3e+02 Score=18.14 Aligned_cols=21 Identities=24% Similarity=0.294 Sum_probs=12.2
Q ss_pred HHHHHHHHhHHHHHHHHhccc
Q 009717 441 ELISVARKTESSLLKIRQGAQ 461 (527)
Q Consensus 441 evL~sv~KtEeSL~RLKk~~~ 461 (527)
|+-.......|-|++|||+-+
T Consensus 5 elykeledlqerlrklrkklr 25 (27)
T 3twe_A 5 ELYKELEDLQERLRKLRKKLR 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 333334455677888877644
No 8
>4fye_A SIDF, inhibitor of growth family, member 3; mixed alpha-beta, phosphatase, phosphoinositides, membrane,; 2.41A {Legionella pneumophila subsp} PDB: 4fyf_A 4fyg_A*
Probab=18.07 E-value=2.1e+02 Score=28.87 Aligned_cols=82 Identities=16% Similarity=0.359 Sum_probs=58.8
Q ss_pred hhhccchhhhhccCCCCCCCC------CcchHhhhHhHHHHHhccccccCCCHHHHHHHHHHHHHHHHHHHHHHHH----
Q 009717 371 RQLKGITATYRMTNKPLPVRH------SPYVSGVLRPLKTLLEGERAMTYLTPEAKNELLLDAATQITSRYHELAA---- 440 (527)
Q Consensus 371 k~v~~Ip~~YR~Tnk~~Pt~~------S~YV~~il~PL~~F~~~~~~~~~l~~e~~~~~~~~v~~~vt~~Y~~~~~---- 440 (527)
++|--|.++|-.-.||+...| -.|+.+++..-+++.+..+.+ .. .+-...+++..+.|..-++
T Consensus 49 kqvvvvnsqydkhgrpvtgqpdviqeannyidnlvaaakslidkdkkg---ek----dlrknaidemaktfkksisetip 121 (761)
T 4fye_A 49 KQVVVVNSQYDKHGRPVTGQPDVIQEANNYIDNLVAAAKSLIDKDKKG---EK----DLRKNAIDEMAKTFKKSISETIP 121 (761)
T ss_dssp CEEEEEECCBCTTSCBCSSCCBHHHHHHHHHHHHHHHHHHHHHHSSSS---CH----HHHHHHHHHHHHHHHHHHHHHSC
T ss_pred ceEEEEeccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHhcccccc---hh----hHHHhHHHHHHHHHHhhhhhhCC
Confidence 566677899999999988877 589999999999999876543 22 3344555666666665554
Q ss_pred ------------------HHHHHHHHhHHHHHHHHhc
Q 009717 441 ------------------ELISVARKTESSLLKIRQG 459 (527)
Q Consensus 441 ------------------evL~sv~KtEeSL~RLKk~ 459 (527)
|.|....|.|-||+.+-+.
T Consensus 122 sdkakadlfsskkssankdfleqlakvegslqqftqa 158 (761)
T 4fye_A 122 SDKAKADLFSSKKSSANKDFLEQLAKVEGSLQQFTQA 158 (761)
T ss_dssp TTTSBCCTTSCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhhhhccccccchHHHHHHHHhhhhHHHHHHH
Confidence 4566667778888777654
No 9
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=17.74 E-value=1.9e+02 Score=23.00 Aligned_cols=77 Identities=17% Similarity=0.185 Sum_probs=39.5
Q ss_pred CCCCCCCCCcchHhhhHhHHHHHhccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccccc
Q 009717 384 NKPLPVRHSPYVSGVLRPLKTLLEGERAMTYLTPEAKNELLLDAATQITSRYHELAAELISVARKTESSLLKIRQGAQRR 463 (527)
Q Consensus 384 nk~~Pt~~S~YV~~il~PL~~F~~~~~~~~~l~~e~~~~~~~~v~~~vt~~Y~~~~~evL~sv~KtEeSL~RLKk~~~~~ 463 (527)
.++.|+=|+.-|+.||+ ..|. +.+. .++++.. .++.+..+-|..-| +..++..-+ . +
T Consensus 7 ~~~~~~i~~~li~ril~--~~F~-~~kT--kIs~dAl-----~l~aeyl~iFV~EA--v~RA~~~a~--------~-e-- 63 (84)
T 4dra_E 7 AGAGSGFRKELVSRLLH--LHFK-DDKT--KVSGDAL-----QLMVELLKVFVVEA--AVRGVRQAQ--------A-E-- 63 (84)
T ss_dssp ----CCCCHHHHHHHHH--TTCS-STTC--EECHHHH-----HHHHHHHHHHHHHH--HHHHHHHHH--------H-T--
T ss_pred CCCCCCCCHHHHHHHHH--HHhc-CCCc--cccHHHH-----HHHHHHHHHHHHHH--HHHHHHHHH--------h-c--
Confidence 45678888888888888 4554 3333 6777654 22222223333222 222222111 1 1
Q ss_pred CCCCCCCCCCCCCchHHHHHHHHHH
Q 009717 464 AGASSDVSDHNVSDTDKICMQLFLD 488 (527)
Q Consensus 464 ~g~~~~~~~~~~sD~dKIr~QL~LD 488 (527)
|++ -=.+.|=+||-=||.||
T Consensus 64 -~~~----~le~e~LEki~pQLlLD 83 (84)
T 4dra_E 64 -DAL----RVDVDQLEKVLPQLLLD 83 (84)
T ss_dssp -TCS----SBCHHHHHHHHHHHHHH
T ss_pred -CCC----cccHHHHHHHHHHHhcC
Confidence 111 12366899999999999
No 10
>1wqg_A Ribosome recycling factor; translation factor, triple-helix bundle, protein synthesis, translation; 2.15A {Mycobacterium tuberculosis} SCOP: d.67.3.1 PDB: 1wqf_A 1wqh_A
Probab=17.05 E-value=5.8e+02 Score=23.14 Aligned_cols=68 Identities=16% Similarity=0.171 Sum_probs=34.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccccCCCCCCCCCCCCCchHHHHH--HHHHHHHH
Q 009717 414 YLTPEAKNELLLDAATQITSRYHELAAELISVARKTESSLLKIRQGAQRRAGASSDVSDHNVSDTDKICM--QLFLDIQE 491 (527)
Q Consensus 414 ~l~~e~~~~~~~~v~~~vt~~Y~~~~~evL~sv~KtEeSL~RLKk~~~~~~g~~~~~~~~~~sD~dKIr~--QL~LDv~~ 491 (527)
.++.|.++++... + ..|.+.++--+..+|+ +....+|+..+ ++.+|.||-=+. ++.-=.+.
T Consensus 104 ~lTeErRkelvK~-~----k~~~E~aKvaiRniRr--da~~~lKk~~K----------~~~iseD~~k~~e~~iQkltd~ 166 (185)
T 1wqg_A 104 QLTEERRRELVKQ-A----KHKGEEAKVSVRNIRR--KAMEELHRIRK----------EGEAGEDEVGRAEKDLDKTTHQ 166 (185)
T ss_dssp CCCHHHHHHHHHH-H----HHHHHHHHHHHHHHHH--HHHHHHHHHHH----------TTSSCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH-H----HHHHHHHHHHHHHHHH--HHHHHHHHhhh----------cCCCChhHHHHHHHHHHHHHHH
Confidence 5677887777643 3 3444444445666653 34444444333 112565554333 33333455
Q ss_pred HHHHHHh
Q 009717 492 YGRSLAA 498 (527)
Q Consensus 492 f~~~~~~ 498 (527)
|..++.+
T Consensus 167 ~i~~id~ 173 (185)
T 1wqg_A 167 YVTQIDE 173 (185)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665543
Done!