Query 009717
Match_columns 527
No_of_seqs 129 out of 160
Neff 6.9
Searched_HMMs 13730
Date Mon Mar 25 11:27:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009717.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/009717hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1lvfa_ a.47.2.1 (A:) Syntaxin 29.4 62 0.0045 24.7 6.7 57 435-498 4-60 (106)
2 d1nvpb_ a.32.1.1 (B:) Large ch 28.2 47 0.0034 21.5 4.6 29 431-459 2-37 (43)
3 d1is1a_ d.67.3.1 (A:) Ribosome 23.0 2E+02 0.014 23.9 9.8 108 369-498 50-173 (185)
4 d1dd5a_ d.67.3.1 (A:) Ribosome 22.8 1.8E+02 0.013 24.2 9.1 67 414-497 103-171 (184)
5 d1y2oa1 a.238.1.3 (A:1-248) BA 22.2 1.9E+02 0.014 24.5 9.7 52 395-461 98-149 (248)
6 d1ek8a_ d.67.3.1 (A:) Ribosome 21.0 2.1E+02 0.015 23.8 9.2 68 414-498 104-173 (185)
7 d1gzsb_ a.168.1.1 (B:) GEF dom 17.5 33 0.0024 28.0 2.6 71 119-200 64-159 (165)
8 d2ff4a2 a.118.8.3 (A:105-283) 16.6 1.3E+02 0.0095 24.5 6.7 55 26-90 98-152 (179)
9 d1wqga1 d.67.3.1 (A:2-184) Rib 15.8 2.9E+02 0.021 22.8 9.8 68 414-498 103-172 (183)
10 d1or7a2 a.177.1.1 (A:-1-111) S 15.1 1E+02 0.0076 22.9 5.2 44 17-61 9-61 (113)
No 1
>d1lvfa_ a.47.2.1 (A:) Syntaxin 6, SNAP-25 homolog {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=29.42 E-value=62 Score=24.71 Aligned_cols=57 Identities=9% Similarity=0.087 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHhcccccCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHh
Q 009717 435 YHELAAELISVARKTESSLLKIRQGAQRRAGASSDVSDHNVSDTDKICMQLFLDIQEYGRSLAA 498 (527)
Q Consensus 435 Y~~~~~evL~sv~KtEeSL~RLKk~~~~~~g~~~~~~~~~~sD~dKIr~QL~LDv~~f~~~~~~ 498 (527)
|+....||..++.+++.-+++..+.+.. ++ +++ ...-+-.+.+|.-.+.....+++.
T Consensus 4 F~~v~~EVq~s~~~~~~l~~~w~~~~~~--~~-~~~----~~e~~~~~~eL~~~l~siewdL~d 60 (106)
T d1lvfa_ 4 FFVVKGEVQKAVNTAQGLFQRWTELLQG--PS-AAT----REEIDWTTNELRNNLRSIEWDLED 60 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTC--TT-SCC----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhcc--CC-CCC----cHHHHHHHHHHHHHHHHHHhHHHH
Confidence 7888999999999999998888776641 11 100 012233677776666555554443
No 2
>d1nvpb_ a.32.1.1 (B:) Large chain TOA1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.22 E-value=47 Score=21.54 Aligned_cols=29 Identities=17% Similarity=0.390 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHh-------HHHHHHHHhc
Q 009717 431 ITSRYHELAAELISVARKT-------ESSLLKIRQG 459 (527)
Q Consensus 431 vt~~Y~~~~~evL~sv~Kt-------EeSL~RLKk~ 459 (527)
|.+-|...+.||+.+||.- |..|..||+.
T Consensus 2 V~kvY~~VIedVI~~vR~~F~~~GvDe~vL~eLk~~ 37 (43)
T d1nvpb_ 2 VPKLYRSVIEDVINDVRDIFLDDGVDEQVLMELKTL 37 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 4455667777777776642 4566666653
No 3
>d1is1a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Vibrio parahaemolyticus [TaxId: 670]}
Probab=22.97 E-value=2e+02 Score=23.93 Aligned_cols=108 Identities=13% Similarity=0.096 Sum_probs=55.4
Q ss_pred Hhhhhccch----hhhhccCCCCCCCCCcchHhhhHhHHHHHhc-------ccc---ccCCCHHHHHHHHHHHHHHHHHH
Q 009717 369 DLRQLKGIT----ATYRMTNKPLPVRHSPYVSGVLRPLKTLLEG-------ERA---MTYLTPEAKNELLLDAATQITSR 434 (527)
Q Consensus 369 ~Lk~v~~Ip----~~YR~Tnk~~Pt~~S~YV~~il~PL~~F~~~-------~~~---~~~l~~e~~~~~~~~v~~~vt~~ 434 (527)
+|+++..|. ++.--| |..++. |..|.+-+..=.-+ ..- -+.++.|.++++.. .+...++.
T Consensus 50 pL~~lA~Is~~~~~~l~I~----p~D~~~-v~~IekAI~~s~lglnp~~dg~~Iri~iP~lT~E~R~elvK-~~k~~~E~ 123 (185)
T d1is1a_ 50 PLNQVANVVAEDARTLAIT----VFDKEL-TQKVEKAIMMSDLGLNPMSAGTIIRVPLPPLTEERRKDLVK-IVRGEAEG 123 (185)
T ss_dssp EGGGTEEEEEEETTEEEEE----ESSTTT-HHHHHHHHHHTTSSCCCEEETTEEEEECCCCCHHHHHHHHH-HHHHHHHH
T ss_pred cHHHHhhhccCCCceEEEE----ecccch-HHHHHHHHHhcccccccccCCceeeecCCCCcHHHHHHHHH-HHHHHHHH
Confidence 566666652 222222 555444 66666666543211 100 02567787766663 34444455
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHhcccccCCCCCCCCCCCCCchHHHHHH--HHHHHHHHHHHHHh
Q 009717 435 YHELAAELISVARKTESSLLKIRQGAQRRAGASSDVSDHNVSDTDKICMQ--LFLDIQEYGRSLAA 498 (527)
Q Consensus 435 Y~~~~~evL~sv~KtEeSL~RLKk~~~~~~g~~~~~~~~~~sD~dKIr~Q--L~LDv~~f~~~~~~ 498 (527)
+.. -+..+|+ +..+.+|+..+ +.++|.||.=++| +.-=.+.|...+++
T Consensus 124 akv----~iRniRr--~~~~~ikk~~k----------~~~iseD~~k~~~~~iq~ltd~~~~~id~ 173 (185)
T d1is1a_ 124 GRV----AVRNIRR--DANNDLKALLK----------DKEISEDEDRKAQEEIQKLTDVAVKKIDE 173 (185)
T ss_dssp HHH----HHHHHHH--HHHHHHHHHHH----------TTSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH----HHHHHHH--HHHHHHHhhhc----------cCCCCHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 444 5666664 45566665554 1126666664443 44445566666654
No 4
>d1dd5a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Thermotoga maritima [TaxId: 2336]}
Probab=22.83 E-value=1.8e+02 Score=24.20 Aligned_cols=67 Identities=18% Similarity=0.202 Sum_probs=38.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccccCCCCCCCCCCCCCchHHHHHH--HHHHHHH
Q 009717 414 YLTPEAKNELLLDAATQITSRYHELAAELISVARKTESSLLKIRQGAQRRAGASSDVSDHNVSDTDKICMQ--LFLDIQE 491 (527)
Q Consensus 414 ~l~~e~~~~~~~~v~~~vt~~Y~~~~~evL~sv~KtEeSL~RLKk~~~~~~g~~~~~~~~~~sD~dKIr~Q--L~LDv~~ 491 (527)
.++.|.+++++ +.+...++.+.. -+..+|+ +.++++|+.++. +++|.||.=++| +.-=.+.
T Consensus 103 ~lT~E~R~elv-K~~k~~~E~aKv----~iR~iR~--~~~~~lk~~~k~----------~~iseD~~k~~~~~iq~ltd~ 165 (184)
T d1dd5a_ 103 SPTTEQREKWV-KKAKEIVEEGKI----AIRNIRR--EILKKIKEDQKE----------GLIPEDDAKRLENEIQKLTDE 165 (184)
T ss_dssp CCCHHHHHHHH-HHHHHHHHHHHH----HHHHHHH--HHHHHHHHHHHH----------TSSCHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHH-HHHHHHHHHHHH----HHHHHHH--HHHHHHHHhhcc----------CCCChhHHHHHHHHHHHHHHH
Confidence 46678776666 444555555554 5666764 567777776651 226777765555 3333445
Q ss_pred HHHHHH
Q 009717 492 YGRSLA 497 (527)
Q Consensus 492 f~~~~~ 497 (527)
|...++
T Consensus 166 ~~~~id 171 (184)
T d1dd5a_ 166 FIEKLD 171 (184)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555554
No 5
>d1y2oa1 a.238.1.3 (A:1-248) BAP2/IRSp53 N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.23 E-value=1.9e+02 Score=24.48 Aligned_cols=52 Identities=17% Similarity=0.185 Sum_probs=37.2
Q ss_pred hHhhhHhHHHHHhccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccc
Q 009717 395 VSGVLRPLKTLLEGERAMTYLTPEAKNELLLDAATQITSRYHELAAELISVARKTESSLLKIRQGAQ 461 (527)
Q Consensus 395 V~~il~PL~~F~~~~~~~~~l~~e~~~~~~~~v~~~vt~~Y~~~~~evL~sv~KtEeSL~RLKk~~~ 461 (527)
..+++.||.+|++++.. .+.+.-++|....++.-...+|....++|++++++
T Consensus 98 ~~~~i~PL~~~~~~d~k---------------~i~~~kK~~~k~~k~~~~~l~K~~~~~~k~~kk~~ 149 (248)
T d1y2oa1 98 HNELLTQLEQKVELDSR---------------YLSAALKKYQTEQRSKGDALDKCQAELKKLRKKSQ 149 (248)
T ss_dssp HHTTHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 45799999999975522 23345566666666666788899999999887765
No 6
>d1ek8a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Escherichia coli [TaxId: 562]}
Probab=20.98 E-value=2.1e+02 Score=23.79 Aligned_cols=68 Identities=15% Similarity=0.108 Sum_probs=37.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccccCCCCCCCCCCCCCchHHHHHH--HHHHHHH
Q 009717 414 YLTPEAKNELLLDAATQITSRYHELAAELISVARKTESSLLKIRQGAQRRAGASSDVSDHNVSDTDKICMQ--LFLDIQE 491 (527)
Q Consensus 414 ~l~~e~~~~~~~~v~~~vt~~Y~~~~~evL~sv~KtEeSL~RLKk~~~~~~g~~~~~~~~~~sD~dKIr~Q--L~LDv~~ 491 (527)
.++.|.+++++ +.+...++.+. .-+..+|+ +....+|+..+. +++|.||.=++| +.-=.+.
T Consensus 104 ~lT~E~R~elv-K~~k~~~E~~k----v~iR~iRr--~~~~~ik~~~k~----------~~iseD~~k~~~~~iq~ltd~ 166 (185)
T d1ek8a_ 104 PLTEERRKDLT-KIVRGEAEQAR----VAVRNVRR--DANDKVKALLKD----------KEISEDDDRRSQDDVQKLTDA 166 (185)
T ss_dssp CCCHHHHHHHH-HHHHHHHHHHH----HHHHHHHH--HHHHHHHHHHHH----------SSCCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHH-HHHHHHHHHHH----HHHHHHHH--HHHHHHHhhccc----------CCCChhHHHHHHHHHHHHHHH
Confidence 56778887775 44544444444 45666653 455555555431 126666664443 4444566
Q ss_pred HHHHHHh
Q 009717 492 YGRSLAA 498 (527)
Q Consensus 492 f~~~~~~ 498 (527)
|...+.+
T Consensus 167 ~~~~id~ 173 (185)
T d1ek8a_ 167 AIKKIEA 173 (185)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666654
No 7
>d1gzsb_ a.168.1.1 (B:) GEF domain of SopE toxin {Salmonella typhimurium [TaxId: 90371]}
Probab=17.48 E-value=33 Score=28.04 Aligned_cols=71 Identities=23% Similarity=0.301 Sum_probs=41.8
Q ss_pred ccHHHHHHHHHh-cCC-----ccccCCC--chHHHHHHHHHHHHHHHHHhhCCCHHHHHHHhhchhHHHHH---------
Q 009717 119 SILKEVLSAIQK-GKP-----GAFSPGR--PTQFLRNYKSSLDFLAYLEGYCPSRSAVAKFRAEAIYVEFM--------- 181 (527)
Q Consensus 119 svw~ev~~~l~~-~l~-----~iFapG~--Pd~F~~nY~~t~~Fl~~lE~~~~S~~~v~~lR~~~~y~~f~--------- 181 (527)
.++.|+.++-.. ++| +||-||- ..-|+.--.++ -- ...=.+|++++.|.+|+
T Consensus 64 pflkeiGEAA~~aGLPG~~K~gVFtPsGaGaNPfv~~li~~------a~-----~~~~h~~~n~~qq~~fk~YArq~~m~ 132 (165)
T d1gzsb_ 64 PFLQEIGEAAKNAGLPGTTKNDVFTPSGAGANPFITPLISS------AN-----SKYPRMFINQHQQASFKIYAEKIIMT 132 (165)
T ss_dssp HHHHHHHHHHHHTTCCEEEETTEEEETTCSSCTTHHHHHHH------HH-----HHCGGGGSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCcccCCccCCCCCCCCchhHHHHHH------hh-----hhccHHHHcccHHHHHHHHHHHHHHH
Confidence 466777776554 443 5888862 12233211111 01 11124577777777775
Q ss_pred --------HhhcchhhHHHHHHHHHHh
Q 009717 182 --------KQWNVGVYFSLRFQEIAGA 200 (527)
Q Consensus 182 --------~rWnLpVYFqlRfqEIa~~ 200 (527)
.+|..|.=||++.+.|+..
T Consensus 133 lVap~~~e~~~~tp~~F~~tve~i~~~ 159 (165)
T d1gzsb_ 133 EVAPLFNECAMPTPQQFQLILENIANK 159 (165)
T ss_dssp HHGGGGTTCSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcccCCcHHHHHHHHHHHhhh
Confidence 6899999999988888753
No 8
>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=16.64 E-value=1.3e+02 Score=24.46 Aligned_cols=55 Identities=18% Similarity=0.211 Sum_probs=38.2
Q ss_pred cCCHHHHHHHHHHHHHhcChhhHHHHHHHHhhHHHHhhhcCCCCCccccCCCcchHHHHHHHHHH
Q 009717 26 HQNANVIYNCLRAYAAIDNTRNAEEIFCNTVVAPLMQKIIPHGPSEALAGASGDELESDYEQIKQ 90 (527)
Q Consensus 26 ~~~~~~L~~cLr~Y~~ld~~~~aE~~~r~~vV~P~~~~ii~~~~~~~~~~~~~~~L~~~y~~il~ 90 (527)
..+...-.+.+++|..+|+..+|.+.|++. .+=+.++ +...+ +..|..+|..|+.
T Consensus 98 P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~-~~~L~~e-LG~~P--------~~~l~~l~~~il~ 152 (179)
T d2ff4a2 98 PYREPLWTQLITAYYLSDRQSDALGAYRRV-KTTLADD-LGIDP--------GPTLRALNERILR 152 (179)
T ss_dssp TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH-HHHHHHH-HSCCC--------CHHHHHHHHHHHT
T ss_pred CccHHHHHHHHHHHHHhcCHHHHHHHHHHH-HHHHHHH-hCCCc--------CHHHHHHHHHHHh
Confidence 457778888899999999999999999984 2222222 22221 2368888888864
No 9
>d1wqga1 d.67.3.1 (A:2-184) Ribosome recycling factor, RRF {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=15.76 E-value=2.9e+02 Score=22.79 Aligned_cols=68 Identities=12% Similarity=0.126 Sum_probs=37.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccccCCCCCCCCCCCCCchHHHHHHH--HHHHHH
Q 009717 414 YLTPEAKNELLLDAATQITSRYHELAAELISVARKTESSLLKIRQGAQRRAGASSDVSDHNVSDTDKICMQL--FLDIQE 491 (527)
Q Consensus 414 ~l~~e~~~~~~~~v~~~vt~~Y~~~~~evL~sv~KtEeSL~RLKk~~~~~~g~~~~~~~~~~sD~dKIr~QL--~LDv~~ 491 (527)
.++.|.+++++. .+...++.+.. -+..+|+ +..+++|+.++ ++.+|.||.=++|- .-=.+.
T Consensus 103 ~lT~E~R~elvK-~ak~~~E~aKv----~iRniR~--~~~~~lk~~~k----------~~~iseD~~~~~~~~iq~ltd~ 165 (183)
T d1wqga1 103 QLTEERRRELVK-QAKHKGEEAKV----SVRNIRR--KAMEELHRIRK----------EGEAGEDEVGRAEKDLDKTTHQ 165 (183)
T ss_dssp CCCHHHHHHHHH-HHHHHHHHHHH----HHHHHHH--HHHHHHHHHHH----------TTSSCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHH-HHHHHHHHHHH----HHHHHHH--HHHHHHHHhcc----------cCCCChhHHHHHHHHHHHHHHH
Confidence 467787766663 34444444444 5666763 55666666654 11266777655543 333455
Q ss_pred HHHHHHh
Q 009717 492 YGRSLAA 498 (527)
Q Consensus 492 f~~~~~~ 498 (527)
|...+++
T Consensus 166 ~~~~id~ 172 (183)
T d1wqga1 166 YVTQIDE 172 (183)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6655543
No 10
>d1or7a2 a.177.1.1 (A:-1-111) SigmaE factor (RpoE) {Escherichia coli [TaxId: 562]}
Probab=15.11 E-value=1e+02 Score=22.85 Aligned_cols=44 Identities=5% Similarity=0.181 Sum_probs=29.8
Q ss_pred hHHHHhhhccCCHHHHHHHHHHHHH---------hcChhhHHHHHHHHhhHHHH
Q 009717 17 GHCFVHGLEHQNANVIYNCLRAYAA---------IDNTRNAEEIFCNTVVAPLM 61 (527)
Q Consensus 17 ~~~f~~~l~~~~~~~L~~cLr~Y~~---------ld~~~~aE~~~r~~vV~P~~ 61 (527)
+..++..++.+|..+.....+.|.. ++. .+||+++.+++++=+-
T Consensus 9 D~~Li~~~~~Gd~~Af~~l~~~y~~~l~~~~~~~~~~-~daeDl~Qe~~l~~~~ 61 (113)
T d1or7a2 9 DQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYR 61 (113)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTSCG-GGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHH
Confidence 4667777777787665555444432 555 6899999998887553
Done!