BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009718
(527 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IYG|B Chain B, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
pdb|3KTT|B Chain B, Atomic Model Of Bovine Tric Cct2(Beta) Subunit Derived
From A 4.0 Angstrom Cryo-Em Map
pdb|4A0O|A Chain A, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|B Chain B, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|C Chain C, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|D Chain D, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|E Chain E, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|F Chain F, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|G Chain G, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|H Chain H, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|I Chain I, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|J Chain J, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|K Chain K, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|L Chain L, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|M Chain M, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|N Chain N, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|O Chain O, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|P Chain P, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0V|A Chain A, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|B Chain B, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|C Chain C, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|D Chain D, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|E Chain E, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|F Chain F, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|G Chain G, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|H Chain H, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|I Chain I, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|J Chain J, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|K Chain K, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|L Chain L, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|M Chain M, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|N Chain N, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|O Chain O, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|P Chain P, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0W|A Chain A, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|B Chain B, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|C Chain C, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|D Chain D, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|E Chain E, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|F Chain F, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|G Chain G, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|H Chain H, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|I Chain I, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|J Chain J, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|K Chain K, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|L Chain L, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|M Chain M, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|N Chain N, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|O Chain O, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|P Chain P, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A13|A Chain A, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|B Chain B, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|C Chain C, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|D Chain D, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|E Chain E, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|F Chain F, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|G Chain G, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|H Chain H, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|I Chain I, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|J Chain J, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|K Chain K, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|L Chain L, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|M Chain M, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|N Chain N, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|O Chain O, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|P Chain P, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
Length = 513
Score = 719 bits (1855), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/511 (69%), Positives = 434/511 (84%)
Query: 11 ANEEKGERARMASFVGAMAIADLVKTTLGPKGMDKILQSTGRGREVTVTNDGATILKSLH 70
A+EE+ E AR++SF+GA+AI DLVK+TLGPKGMDKIL S+GR + VTNDGATILK++
Sbjct: 3 ADEERAETARLSSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDASLMVTNDGATILKNIG 62
Query: 71 IDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAE 130
+DNPAAKVLVD+S+VQDDEVGDGTTSV VLA ELLREAE L+A KIHP TII+G+R A +
Sbjct: 63 VDNPAAKVLVDMSRVQDDEVGDGTTSVTVLAAELLREAESLIAKKIHPQTIIAGWREATK 122
Query: 131 CARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAVMRLKGSTN 190
AR ALL VD+ + F+ DLM IA TTLSSK+L+ K+HF +LAV+AV+RLKGS N
Sbjct: 123 AARQALLNSAVDHGSDEVKFRQDLMNIAGTTLSSKLLTHHKDHFTKLAVEAVLRLKGSGN 182
Query: 191 LESIQIIKKPGGSLKDSFLDEGFILDKKIGIGQPKRIENAKILVANTAMDTDKVKIYGAR 250
LE+I +IKK GGSL DS+LDEGF+LDKKIG+ QPKRIENAKIL+ANT MDTDK+KI+G+R
Sbjct: 183 LEAIHVIKKLGGSLADSYLDEGFLLDKKIGVNQPKRIENAKILIANTGMDTDKIKIFGSR 242
Query: 251 VRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHA 310
VRVDS +K AEIE AEK+KM+EKV++I+ HGINCF+NRQLIYN+PE+LF AG++AIEHA
Sbjct: 243 VRVDSTAKVAEIEHAEKEKMKEKVERILKHGINCFINRQLIYNYPEQLFGAAGVMAIEHA 302
Query: 311 DFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVL 370
DF G+ERLALVTGGEIASTFD+PE VKLG CKLIEE+MIGEDKLIHFSGV +G+ACTIVL
Sbjct: 303 DFVGVERLALVTGGEIASTFDHPELVKLGSCKLIEEVMIGEDKLIHFSGVALGEACTIVL 362
Query: 371 RGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELARKTPGKKSHA 430
RGA+ +LDEAERSLHDALCVL+QTV DSR ++GGG EM+MA V +LA +TPGK++ A
Sbjct: 363 RGATQQILDEAERSLHDALCVLAQTVKDSRTVYGGGCSEMLMAHAVTQLASRTPGKEAVA 422
Query: 431 IEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKEGCPAGIDVISGSVGDMAELGISE 490
+E++++AL +PT IADNAG DSA+L+AQLRA H + AG+D+ G++GDM+ LGI+E
Sbjct: 423 MESYAKALRMLPTIIADNAGYDSADLVAQLRAAHSEGKTTAGLDMKEGTIGDMSVLGITE 482
Query: 491 SFKVKQAVLLSATEAAEMILRVDEIITCAPR 521
SF+VK+ VLLSA EAAE+ILRVD II APR
Sbjct: 483 SFQVKRQVLLSAAEAAEVILRVDNIIKAAPR 513
>pdb|3P9D|B Chain B, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|J Chain J, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|BB Chain b, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|JJ Chain j, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|B Chain B, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|J Chain J, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|BB Chain b, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|JJ Chain j, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 527
Score = 648 bits (1672), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 324/518 (62%), Positives = 406/518 (78%), Gaps = 2/518 (0%)
Query: 5 RIFRDEANEEKGERARMASFVGAMAIADLVKTTLGPKGMDKILQSTGRGREVTVTNDGAT 64
+IF D+ EE+ E AR+++FVGA+A+ DLVK+TLGPKGMDK+LQS VTNDGAT
Sbjct: 4 QIFGDQVTEERAENARLSAFVGAIAVGDLVKSTLGPKGMDKLLQS-ASSNTCMVTNDGAT 62
Query: 65 ILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLV-AAKIHPMTIIS 123
ILKS+ +DNPAAKVLV+ISKVQDDEVGDGTTSV VL+ ELLREAEKL+ +KIHP TII
Sbjct: 63 ILKSIPLDNPAAKVLVNISKVQDDEVGDGTTSVTVLSAELLREAEKLIDQSKIHPQTIIE 122
Query: 124 GFRMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAVM 183
G+R+A+ A DAL + VDN + F+ DL+ IA TTLSSKILSQDK+HF +LA +A++
Sbjct: 123 GYRLASAAALDALTKAAVDNSHDKTMFREDLIHIAKTTLSSKILSQDKDHFAELATNAIL 182
Query: 184 RLKGSTNLESIQIIKKPGGSLKDSFLDEGFILDKKIGIGQPKRIENAKILVANTAMDTDK 243
RLKGSTNLE IQIIK GG L DSFLDEGFIL KK G QPKRIENAKIL+ANT +DTDK
Sbjct: 183 RLKGSTNLEHIQIIKILGGKLSDSFLDEGFILAKKFGNNQPKRIENAKILIANTTLDTDK 242
Query: 244 VKIYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAG 303
VKI+G + +VDS +K A++E AE++KM+ K+ KI GIN F+NRQLIY++PE+LF D G
Sbjct: 243 VKIFGTKFKVDSTAKLAQLEKAEREKMKNKIAKISKFGINTFINRQLIYDYPEQLFTDLG 302
Query: 304 ILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMG 363
I +IEHADF+G+ERLALVTGGE+ STFD P KLG C +IEEIM+GE + FSG + G
Sbjct: 303 INSIEHADFEGVERLALVTGGEVVSTFDEPSKCKLGECDVIEEIMLGEQPFLKFSGCKAG 362
Query: 364 QACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELARKT 423
+ACTIVLRGA+ LDEAERSLHDAL VLSQT ++R + GGG EMVM+K VD A+
Sbjct: 363 EACTIVLRGATDQTLDEAERSLHDALSVLSQTTKETRTVLGGGCAEMVMSKAVDTEAQNI 422
Query: 424 PGKKSHAIEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKEGCPAGIDVISGSVGDM 483
GKKS A+EAF+RAL +PT +ADNAG DS+EL+++LR+ +G+D+ +G++ DM
Sbjct: 423 DGKKSLAVEAFARALRQLPTILADNAGFDSSELVSKLRSSIYNGISTSGLDLNNGTIADM 482
Query: 484 AELGISESFKVKQAVLLSATEAAEMILRVDEIITCAPR 521
+LGI ES+K+K+AV+ SA+EAAE++LRVD II PR
Sbjct: 483 RQLGIVESYKLKRAVVSSASEAAEVLLRVDNIIRARPR 520
>pdb|3KO1|A Chain A, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|B Chain B, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|C Chain C, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|D Chain D, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|E Chain E, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|F Chain F, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|G Chain G, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|H Chain H, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|I Chain I, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
Length = 553
Score = 325 bits (834), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 187/526 (35%), Positives = 320/526 (60%), Gaps = 18/526 (3%)
Query: 6 IFRDEANEEKGERARMASFVGAMAIADLVKTTLGPKGMDKIL-QSTGRGREVTVTNDGAT 64
I ++ ++ G+ A A+ A+ + +K+T GP+GMDK+L S G ++T+TNDGAT
Sbjct: 18 ILKEGSSRTYGKEAVRANIAAVKAVEEALKSTYGPRGMDKMLVDSLG---DITITNDGAT 74
Query: 65 ILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISG 124
IL + + +PAAK+LV I+K QD+E DGT + V+ +GEL+++AE L+ +HP IISG
Sbjct: 75 ILDKMDLQHPAAKLLVQIAKGQDEETADGTKTAVIFSGELVKKAEDLLYKDVHPTIIISG 134
Query: 125 FRMAAECARDALLQKVVDNKENAETFKSDLM-KIAMTTLSSKILSQDKEHFGQLAVDAVM 183
++ A E A LQ + + + +DL+ KIAMT+LSSK ++ +E+ + V AV
Sbjct: 135 YKKAEEVA----LQTIQELAQTVSINDTDLLRKIAMTSLSSKAVAGAREYIADIVVKAVT 190
Query: 184 RL------KGSTNLESIQIIKKPGGSLKDSFLDEGFILDKKI-GIGQPKRIENAKILVAN 236
++ K +L++IQI+KK GGS+ D+ L G ++DK++ G PKR+ENAKI + +
Sbjct: 191 QVAELRGDKWYVDLDNIQIVKKAGGSINDTQLVYGIVVDKEVVHPGMPKRLENAKIALID 250
Query: 237 TAMDTDKVKIYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPE 296
+++ +K ++ A +R++ ++ + E+ ++EKV KI+A G N + ++ I +
Sbjct: 251 ASLEVEKPEL-DAEIRINDPTQMQKFLDEEENLIKEKVDKILATGANVIICQKGIDEVAQ 309
Query: 297 ELFADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIH 356
A G+LA+ A +E+LA TGG + S D LG+ LIEE +GEDK++
Sbjct: 310 SYLAKKGVLAVRRAKKSDLEKLARATGGRVVSNIDEISEQDLGYASLIEERKVGEDKMVF 369
Query: 357 FSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEV 416
G + ++ +I++RG ++DE ER+L DAL ++ + D R + GGG E+ +AK++
Sbjct: 370 VEGAKNPKSISILIRGGLERLVDETERALRDALGTVADVIKDGRAIAGGGAVEIEIAKKL 429
Query: 417 DELARKTPGKKSHAIEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKEGCP-AGIDV 475
+ A + GK+ A+EA++ AL ++ + + +NAG D +L+ +LR+ H+ E GID+
Sbjct: 430 RKYAPQVGGKEQLAVEAYANALESLVSILIENAGFDPIDLLMKLRSTHENENNKWYGIDL 489
Query: 476 ISGSVGDMAELGISESFKVKQAVLLSATEAAEMILRVDEIITCAPR 521
+G DM + G+ E VK + +ATEAA ++LR+D++++ +
Sbjct: 490 YAGQPVDMWQKGVIEPALVKMNAIKAATEAATLVLRIDDVVSAGKK 535
>pdb|1Q3R|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form Of Single Mutant)
pdb|1Q3R|B Chain B, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form Of Single Mutant)
pdb|1Q3R|C Chain C, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form Of Single Mutant)
pdb|1Q3R|D Chain D, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form Of Single Mutant)
Length = 548
Score = 322 bits (825), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 196/518 (37%), Positives = 313/518 (60%), Gaps = 17/518 (3%)
Query: 16 GERARMASFVGAMAIADLVKTTLGPKGMDKIL-QSTGRGREVTVTNDGATILKSLHIDNP 74
G A+ + + A IA+ V+TTLGPKGMDK+L S G ++ VTNDGATIL + + +P
Sbjct: 21 GRDAQRLNILAARIIAETVRTTLGPKGMDKMLVDSLG---DIVVTNDGATILDKIDLQHP 77
Query: 75 AAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARD 134
AAK++V+++K QD E GDGTT+ VV+AGELLR+AE+L+ IHP I G+ +AAE A++
Sbjct: 78 AAKMMVEVAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQNIHPSIITKGYALAAEKAQE 137
Query: 135 ALLQKVVD-NKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAVMRL------KG 187
L + + + ++ ET L+KIA T+++ K KE +LAV+AV ++ K
Sbjct: 138 ILDEIAIRVDPDDEET----LLKIAATSITGKNAESHKELLAKLAVEAVKQVAEKKDGKY 193
Query: 188 STNLESIQIIKKPGGSLKDSFLDEGFILDKKIGIGQ-PKRIENAKILVANTAMDTDKVKI 246
+L++I+ KK G +++S L G ++DK++ + PKR+ENAKI + N A++ K +
Sbjct: 194 VVDLDNIKFEKKAGEGVEESELVRGVVIDKEVVHPRMPKRVENAKIALINEALEVKKTE- 252
Query: 247 YGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILA 306
A++ + S + E++ +++ V I G N ++ I + + A GI+A
Sbjct: 253 TDAKINITSPDQLMSFLEQEEKMLKDMVDHIAQTGANVVFVQKGIDDLAQHYLAKYGIMA 312
Query: 307 IEHADFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQAC 366
+ +E+LA TG +I + + LG+ +++EE + + +I G + +A
Sbjct: 313 VRRVKKSDMEKLAKATGAKIVTNVKDLTPEDLGYAEVVEERKLAGENMIFVEGCKNPKAV 372
Query: 367 TIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELARKTPGK 426
TI++RG + HV+DE ER+L DA+ V+ + D VL GG PE+ +A +DE A++ GK
Sbjct: 373 TILIRGGTEHVIDEVERALEDAVKVVKDVMEDGAVLPAGGAPEIELAIRLDEYAKQVGGK 432
Query: 427 KSHAIEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKEGCPAGIDVISGSVGDMAEL 486
++ AIE F+ AL IP T+A+NAGLD+ E++ ++ +EH+ G GIDV G DM E
Sbjct: 433 EALAIENFADALKIIPKTLAENAGLDTVEMLVKVISEHKNRGLGIGIDVFEGKPADMLEK 492
Query: 487 GISESFKVKQAVLLSATEAAEMILRVDEIITCAPRRRE 524
GI E +VK+ + SA+EAA MILR+D++I + E
Sbjct: 493 GIIEPLRVKKQAIKSASEAAIMILRIDDVIAAKATKPE 530
>pdb|1Q3S|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|B Chain B, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|C Chain C, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|D Chain D, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|E Chain E, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|F Chain F, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|G Chain G, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|H Chain H, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
Length = 548
Score = 320 bits (821), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 196/518 (37%), Positives = 313/518 (60%), Gaps = 17/518 (3%)
Query: 16 GERARMASFVGAMAIADLVKTTLGPKGMDKIL-QSTGRGREVTVTNDGATILKSLHIDNP 74
G A+ + + A IA+ V+TTLGPKGMDK+L S G ++ VTND ATIL + + +P
Sbjct: 21 GRDAQRLNILAARIIAETVRTTLGPKGMDKMLVDSLG---DIVVTNDCATILDKIDLQHP 77
Query: 75 AAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARD 134
AAK++V+++K QD E GDGTT+ VV+AGELLR+AE+L+ IHP II G+ +AAE A++
Sbjct: 78 AAKMMVEVAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQNIHPSIIIKGYALAAEKAQE 137
Query: 135 ALLQKVVD-NKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAVMRL------KG 187
L + + + ++ ET L+KIA T+++ K KE +LAV+AV ++ K
Sbjct: 138 ILDEIAIRVDPDDEET----LLKIAATSITGKNAESHKELLAKLAVEAVKQVAEKKDGKY 193
Query: 188 STNLESIQIIKKPGGSLKDSFLDEGFILDKKIGIGQ-PKRIENAKILVANTAMDTDKVKI 246
+L++I+ KK G +++S L G ++DK++ + PKR+ENAKI + N A++ K +
Sbjct: 194 VVDLDNIKFEKKAGEGVEESELVRGVVIDKEVVHPRMPKRVENAKIALINEALEVKKTE- 252
Query: 247 YGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILA 306
A++ + S + E++ +++ V I G N ++ I + + A GI+A
Sbjct: 253 TDAKINITSPDQLMSFLEQEEKMLKDMVDHIAQTGANVVFVQKGIDDLAQHYLAKYGIMA 312
Query: 307 IEHADFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQAC 366
+ +E+LA TG +I + + LG+ +++EE + + +I G + +A
Sbjct: 313 VRRVKKSDMEKLAKATGAKIVTNVKDLTPEDLGYAEVVEERKLAGENMIFVEGCKNPKAV 372
Query: 367 TIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELARKTPGK 426
TI++RG + HV+DE ER+L DA+ V+ + D VL GG PE+ +A +DE A++ GK
Sbjct: 373 TILIRGGTEHVIDEVERALEDAVKVVKDVMEDGAVLPAGGAPEIELAIRLDEYAKQVGGK 432
Query: 427 KSHAIEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKEGCPAGIDVISGSVGDMAEL 486
++ AIE F+ AL IP T+A+NAGLD+ E++ ++ +EH+ G GIDV G DM E
Sbjct: 433 EALAIENFADALKIIPKTLAENAGLDTVEMLVKVISEHKNRGLGIGIDVFEGKPADMLEK 492
Query: 487 GISESFKVKQAVLLSATEAAEMILRVDEIITCAPRRRE 524
GI E +VK+ + SA+EAA MILR+D++I + E
Sbjct: 493 GIIEPLRVKKQAIKSASEAAIMILRIDDVIAAKATKPE 530
>pdb|1Q2V|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form)
pdb|1Q2V|B Chain B, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form)
pdb|1Q2V|C Chain C, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form)
pdb|1Q2V|D Chain D, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form)
pdb|1Q3Q|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Two-Point Mutant Complexed With Amp-Pnp)
pdb|1Q3Q|B Chain B, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Two-Point Mutant Complexed With Amp-Pnp)
pdb|1Q3Q|C Chain C, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Two-Point Mutant Complexed With Amp-Pnp)
pdb|1Q3Q|D Chain D, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Two-Point Mutant Complexed With Amp-Pnp)
Length = 548
Score = 318 bits (816), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 195/518 (37%), Positives = 312/518 (60%), Gaps = 17/518 (3%)
Query: 16 GERARMASFVGAMAIADLVKTTLGPKGMDKIL-QSTGRGREVTVTNDGATILKSLHIDNP 74
G A+ + + A IA+ V+TTLGPKGMDK+L S G ++ VTND ATIL + + +P
Sbjct: 21 GRDAQRLNILAARIIAETVRTTLGPKGMDKMLVDSLG---DIVVTNDCATILDKIDLQHP 77
Query: 75 AAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARD 134
AAK++V+++K QD E GDGTT+ VV+AGELLR+AE+L+ IHP I G+ +AAE A++
Sbjct: 78 AAKMMVEVAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQNIHPSIITKGYALAAEKAQE 137
Query: 135 ALLQKVVD-NKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAVMRL------KG 187
L + + + ++ ET L+KIA T+++ K KE +LAV+AV ++ K
Sbjct: 138 ILDEIAIRVDPDDEET----LLKIAATSITGKNAESHKELLAKLAVEAVKQVAEKKDGKY 193
Query: 188 STNLESIQIIKKPGGSLKDSFLDEGFILDKKIGIGQ-PKRIENAKILVANTAMDTDKVKI 246
+L++I+ KK G +++S L G ++DK++ + PKR+ENAKI + N A++ K +
Sbjct: 194 VVDLDNIKFEKKAGEGVEESELVRGVVIDKEVVHPRMPKRVENAKIALINEALEVKKTE- 252
Query: 247 YGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILA 306
A++ + S + E++ +++ V I G N ++ I + + A GI+A
Sbjct: 253 TDAKINITSPDQLMSFLEQEEKMLKDMVDHIAQTGANVVFVQKGIDDLAQHYLAKYGIMA 312
Query: 307 IEHADFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQAC 366
+ +E+LA TG +I + + LG+ +++EE + + +I G + +A
Sbjct: 313 VRRVKKSDMEKLAKATGAKIVTNVKDLTPEDLGYAEVVEERKLAGENMIFVEGCKNPKAV 372
Query: 367 TIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELARKTPGK 426
TI++RG + HV+DE ER+L DA+ V+ + D VL GG PE+ +A +DE A++ GK
Sbjct: 373 TILIRGGTEHVIDEVERALEDAVKVVKDVMEDGAVLPAGGAPEIELAIRLDEYAKQVGGK 432
Query: 427 KSHAIEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKEGCPAGIDVISGSVGDMAEL 486
++ AIE F+ AL IP T+A+NAGLD+ E++ ++ +EH+ G GIDV G DM E
Sbjct: 433 EALAIENFADALKIIPKTLAENAGLDTVEMLVKVISEHKNRGLGIGIDVFEGKPADMLEK 492
Query: 487 GISESFKVKQAVLLSATEAAEMILRVDEIITCAPRRRE 524
GI E +VK+ + SA+EAA MILR+D++I + E
Sbjct: 493 GIIEPLRVKKQAIKSASEAAIMILRIDDVIAAKATKPE 530
>pdb|1A6D|A Chain A, Thermosome From T. Acidophilum
pdb|1A6E|A Chain A, Thermosome-Mg-Adp-Alf3 Complex
Length = 545
Score = 311 bits (797), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 190/519 (36%), Positives = 307/519 (59%), Gaps = 17/519 (3%)
Query: 6 IFRDEANEEKGERARMASFVGAMAIADLVKTTLGPKGMDKIL-QSTGRGREVTVTNDGAT 64
+ ++ E+G+ A+ + A AIAD V+TTLGPKGMDK+L S G ++ ++NDGAT
Sbjct: 10 VLKEGTQREQGKNAQRNNIEAAKAIADAVRTTLGPKGMDKMLVDSIG---DIIISNDGAT 66
Query: 65 ILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISG 124
ILK + +++P AK++V++SK QD VGDGTT+ VVL+GELL++AE L+ +HP I +G
Sbjct: 67 ILKEMDVEHPTAKMIVEVSKAQDTAVGDGTTTAVVLSGELLKQAETLLDQGVHPTVISNG 126
Query: 125 FRMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQL---AVDA 181
+R+A AR K++D T + L KIA+T LS K + L AV+A
Sbjct: 127 YRLAVNEAR-----KIIDEIAEKSTDDATLRKIALTALSGKNTGLSNDFLADLVVKAVNA 181
Query: 182 VMRLK-GSTNLES--IQIIKKPGGSLKDSFLDEGFILDK-KIGIGQPKRIENAKILVANT 237
V ++ G T +++ I++ KK GGS+ D+ G ++DK K+ P ++NAKI + ++
Sbjct: 182 VAEVRDGKTIVDTANIKVDKKNGGSVNDTQFISGIVIDKEKVHSKMPDVVKNAKIALIDS 241
Query: 238 AMDTDKVKIYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEE 297
A++ K +I A+V++ SK + E ++ V+KI G N + ++ I + +
Sbjct: 242 ALEIKKTEIE-AKVQISDPSKIQDFLNQETNTFKQMVEKIKKSGANVVLCQKGIDDVAQH 300
Query: 298 LFADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHF 357
A GI A+ +E+LA TG +I + D+ LG + +EE IG+D++
Sbjct: 301 YLAKEGIYAVRRVKKSDMEKLAKATGAKIVTDLDDLTPSVLGEAETVEERKIGDDRMTFV 360
Query: 358 SGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVD 417
G + +A +I++RG + HV+ E ER+L+DA+ V++ T D + L+GGG E +A +
Sbjct: 361 MGCKNPKAVSILIRGGTDHVVSEVERALNDAIRVVAITKEDGKFLWGGGAVEAELAMRLA 420
Query: 418 ELARKTPGKKSHAIEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKEGCPAGIDVIS 477
+ A G++ AIEAF++AL IP T+A+NAG+D + +L+A+ +K G+D+ +
Sbjct: 421 KYANSVGGREQLAIEAFAKALEIIPRTLAENAGIDPINTLIKLKADDEKGRISVGVDLDN 480
Query: 478 GSVGDMAELGISESFKVKQAVLLSATEAAEMILRVDEII 516
VGDM G+ + +VK L SA E A MILR+D++I
Sbjct: 481 NGVGDMKAKGVVDPLRVKTHALESAVEVATMILRIDDVI 519
>pdb|3IYG|H Chain H, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 515
Score = 303 bits (775), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 184/497 (37%), Positives = 283/497 (56%), Gaps = 9/497 (1%)
Query: 30 IADLVKTTLGPKGMDKILQSTGRGREVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDE 89
IA+ V+TTLGP+GMDK++ GRG+ T++NDGATILK L + +PAAK LVDI+K QD E
Sbjct: 23 IAEAVRTTLGPRGMDKLIVD-GRGK-ATISNDGATILKLLDVVHPAAKTLVDIAKSQDAE 80
Query: 90 VGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAET 149
VGDGTTSV +LA E L++ + V +HP II FR A + A + + + V K+ +
Sbjct: 81 VGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTATQLAVNKIKEIAVTVKKEDKV 140
Query: 150 FKSDLM-KIAMTTLSSKILSQDKEHFGQLAVDAVMRLKGSTNLESIQIIKKPGGSLKDSF 208
+ L+ K AMT LSSK++SQ K F ++ VDAVM L L+ I I K GG+L++S
Sbjct: 141 EQRKLLEKCAMTALSSKLISQQKAFFAKMVVDAVMMLDDLLQLKMIGIKKVQGGALEESQ 200
Query: 209 LDEGFILDKKIGIG----QPKRIENAKILVANTAMDTDKVKIYGARVRVDSMSKAAEIEG 264
L G K QPK+ N I + N ++ K + A +RV ++ I
Sbjct: 201 LVAGVAFKKTFSYAGFEMQPKKYHNPMIALLNVELEL-KAEKDNAEIRVHTVEDYQAIVD 259
Query: 265 AEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGG 324
AE + +K++KI G +++ I + + FAD + + ++R + GG
Sbjct: 260 AEWNILYDKLEKIHHSGAKVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMMACGG 319
Query: 325 EIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDEAERS 384
I ++ + S LG C++ EE IG ++ F+G + CTI+LRG + ++E ERS
Sbjct: 320 SIQTSVNALSSDVLGRCQVFEETQIGGERYNFFTGCPKAKTCTIILRGGAEQFMEETERS 379
Query: 385 LHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELARKTPGKKSHAIEAFSRALVAIPTT 444
LHDA+ ++ + + + V+ GGG EM ++K + + +R PGK+ I A+++AL IP
Sbjct: 380 LHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIPGKQQLLIGAYAKALEIIPRQ 439
Query: 445 IADNAGLDSAELIAQLRAEHQKEGCPAGIDVISGSVGDMAELGISESFKVKQAVLLSATE 504
+ DNAG D+ ++ +LRA H + G G+D+ + + D E + E V+ L +A+E
Sbjct: 440 LCDNAGFDATNILNKLRARHAQGGMWYGVDINTEDIADNFEAFVWEPAMVRINALTAASE 499
Query: 505 AAEMILRVDEIITCAPR 521
AA +I+ VDE I PR
Sbjct: 500 AACLIVSVDETIK-NPR 515
>pdb|1A6D|B Chain B, Thermosome From T. Acidophilum
pdb|1A6E|B Chain B, Thermosome-Mg-Adp-Alf3 Complex
Length = 543
Score = 299 bits (766), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 184/521 (35%), Positives = 312/521 (59%), Gaps = 15/521 (2%)
Query: 6 IFRDEANEEKGERARMASFVGAMAIADLVKTTLGPKGMDKIL-QSTGRGREVTVTNDGAT 64
I ++ E G+ A + A+AI++ V+++LGP+GMDK+L S G ++ +TNDG T
Sbjct: 9 ILKEGTKRESGKDAMKENIEAAIAISNSVRSSLGPRGMDKMLVDSLG---DIVITNDGVT 65
Query: 65 ILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISG 124
ILK + +++PAAK++V++SK QD VGDGTT+ V++AG LL++A+ L+ +HP I G
Sbjct: 66 ILKEMDVEHPAAKMMVEVSKTQDSFVGDGTTTAVIIAGGLLQQAQGLINQNVHPTVISEG 125
Query: 125 FRMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAVMR 184
+RMA+E A+ + + + K A+ K+ L+K+A T+L+SK S K+ +++ +AV
Sbjct: 126 YRMASEEAKRVIDE--ISTKIGADE-KALLLKMAQTSLNSKSASVAKDKLAEISYEAVKS 182
Query: 185 L------KGSTNLESIQIIKKPGGSLKDSFLDEGFILDK-KIGIGQPKRIENAKILVANT 237
+ K + ++IQ++KK GG++ D+ L G I+DK K+ G P +++AKI + +
Sbjct: 183 VAELRDGKYYVDFDNIQVVKKQGGAIDDTQLINGIIVDKEKVHPGMPDVVKDAKIALLDA 242
Query: 238 AMDTDKVKIYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEE 297
++ K + + +R++ S + E+ +RE V KI + G N + ++ I + +
Sbjct: 243 PLEIKKPE-FDTNLRIEDPSMIQKFLAQEENMLREMVDKIKSVGANVVITQKGIDDMAQH 301
Query: 298 LFADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHF 357
+ AGI A+ +++LA TG I ST D S LG + +E++ +GED +
Sbjct: 302 YLSRAGIYAVRRVKKSDMDKLAKATGASIVSTIDEISSSDLGTAERVEQVKVGEDYMTFV 361
Query: 358 SGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVD 417
+G + +A +I++RG + HV+DE ERS+ D+L V++ + D GGG +A +
Sbjct: 362 TGCKNPKAVSILVRGETEHVVDEMERSITDSLHVVASALEDGAYAAGGGATAAEIAFRLR 421
Query: 418 ELARKTPGKKSHAIEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKEGCPAGIDVIS 477
A+K G++ AIE F+ A+ IP +A+NAGLD +++ +LRAEH K GI+V +
Sbjct: 422 SYAQKIGGRQQLAIEKFADAIEEIPRALAENAGLDPIDILLKLRAEHAKGNKTYGINVFT 481
Query: 478 GSVGDMAELGISESFKVKQAVLLSATEAAEMILRVDEIITC 518
G + DM + G+ E +V + + SATEAA MILR+D++I
Sbjct: 482 GEIEDMVKNGVIEPIRVGKQAIESATEAAIMILRIDDVIAT 522
>pdb|3IZH|A Chain A, Mm-Cpn D386a With Atp
pdb|3IZH|B Chain B, Mm-Cpn D386a With Atp
pdb|3IZH|C Chain C, Mm-Cpn D386a With Atp
pdb|3IZH|D Chain D, Mm-Cpn D386a With Atp
pdb|3IZH|E Chain E, Mm-Cpn D386a With Atp
pdb|3IZH|F Chain F, Mm-Cpn D386a With Atp
pdb|3IZH|G Chain G, Mm-Cpn D386a With Atp
pdb|3IZH|H Chain H, Mm-Cpn D386a With Atp
pdb|3IZH|I Chain I, Mm-Cpn D386a With Atp
pdb|3IZH|J Chain J, Mm-Cpn D386a With Atp
pdb|3IZH|K Chain K, Mm-Cpn D386a With Atp
pdb|3IZH|L Chain L, Mm-Cpn D386a With Atp
pdb|3IZH|M Chain M, Mm-Cpn D386a With Atp
pdb|3IZH|N Chain N, Mm-Cpn D386a With Atp
pdb|3IZH|O Chain O, Mm-Cpn D386a With Atp
pdb|3IZH|P Chain P, Mm-Cpn D386a With Atp
pdb|3IZM|A Chain A, Mm-Cpn Wildtype With Atp
pdb|3IZM|B Chain B, Mm-Cpn Wildtype With Atp
pdb|3IZM|C Chain C, Mm-Cpn Wildtype With Atp
pdb|3IZM|D Chain D, Mm-Cpn Wildtype With Atp
pdb|3IZM|E Chain E, Mm-Cpn Wildtype With Atp
pdb|3IZM|F Chain F, Mm-Cpn Wildtype With Atp
pdb|3IZM|G Chain G, Mm-Cpn Wildtype With Atp
pdb|3IZM|H Chain H, Mm-Cpn Wildtype With Atp
pdb|3IZM|I Chain I, Mm-Cpn Wildtype With Atp
pdb|3IZM|J Chain J, Mm-Cpn Wildtype With Atp
pdb|3IZM|K Chain K, Mm-Cpn Wildtype With Atp
pdb|3IZM|L Chain L, Mm-Cpn Wildtype With Atp
pdb|3IZM|M Chain M, Mm-Cpn Wildtype With Atp
pdb|3IZM|N Chain N, Mm-Cpn Wildtype With Atp
pdb|3IZM|O Chain O, Mm-Cpn Wildtype With Atp
pdb|3IZM|P Chain P, Mm-Cpn Wildtype With Atp
Length = 513
Score = 299 bits (765), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 182/508 (35%), Positives = 308/508 (60%), Gaps = 15/508 (2%)
Query: 16 GERARMASFVGAMAIADLVKTTLGPKGMDKIL-QSTGRGREVTVTNDGATILKSLHIDNP 74
G A+ + + IA+ V++TLGPKGMDK+L G +V VTNDG TIL+ + +++P
Sbjct: 11 GRDAQRMNILAGRIIAETVRSTLGPKGMDKMLVDDLG---DVVVTNDGVTILREMSVEHP 67
Query: 75 AAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARD 134
AAK+L++++K Q+ EVGDGTT+ VV+AGELLR+AE+L+ +HP ++ G++ AA+ A++
Sbjct: 68 AAKMLIEVAKTQEKEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVVKGYQAAAQKAQE 127
Query: 135 ALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQL---AVDAVMRLKGSTNL 191
L K + + A+ K L KIAMT+++ K + KE ++ AV AV+ +G +
Sbjct: 128 LL--KTIACEVGAQD-KEILTKIAMTSITGKGAEKAKEKLAEIIVEAVSAVVDDEGKVDK 184
Query: 192 ESIQIIKKPGGSLKDSFLDEGFILDK-KIGIGQPKRIENAKILVANTAMDTDKVKIYGAR 250
+ I+I KK G S+ D+ L +G ++DK ++ PK++ +AKI + N A++ + + A
Sbjct: 185 DLIKIEKKSGASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALLNCAIEIKETE-TDAE 243
Query: 251 VRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHA 310
+R+ +K E E++ +++ V +I A G N ++ I + + A GI+A
Sbjct: 244 IRITDPAKLMEFIEQEEKMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKEGIVAARRV 303
Query: 311 DFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVL 370
+E+LA TG + + + + LG L+EE I D +I + +A T+++
Sbjct: 304 KKSDMEKLAKATGANVITNIKDLSAQDLGDAGLVEERKISGDSMIFVEECKHPKAVTMLI 363
Query: 371 RGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELARKTPGKKSHA 430
RG + HV++E R++ DA+ V+ T+ D R++ GGG E+ ++ ++ E A G++ A
Sbjct: 364 RGTTEHVIEEVARAVDDAVGVVGCTIEDGRIVSGGGSTEVELSMKLREYAEGISGREQLA 423
Query: 431 IEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKEG--CPAGIDVISGSVGDMAELGI 488
+ AF+ AL IP T+A+NAGLD+ E++ ++RA H G C AG++V +G+V DM E G+
Sbjct: 424 VRAFADALEVIPRTLAENAGLDAIEILVKVRAAHASNGNKC-AGLNVFTGAVEDMCENGV 482
Query: 489 SESFKVKQAVLLSATEAAEMILRVDEII 516
E +VK + SA E+ EM+LR+D++I
Sbjct: 483 VEPLRVKTQAIQSAAESTEMLLRIDDVI 510
>pdb|3LOS|A Chain A, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|B Chain B, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|C Chain C, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|D Chain D, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|E Chain E, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|F Chain F, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|G Chain G, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|H Chain H, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|I Chain I, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|J Chain J, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|K Chain K, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|L Chain L, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|M Chain M, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|N Chain N, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|O Chain O, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|P Chain P, Atomic Model Of Mm-Cpn In The Closed State
pdb|3KFB|A Chain A, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|B Chain B, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|C Chain C, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|D Chain D, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|E Chain E, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|F Chain F, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|G Chain G, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|H Chain H, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3RUQ|A Chain A, Crystal Structure Of Cpn-Wt In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUQ|B Chain B, Crystal Structure Of Cpn-Wt In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUQ|C Chain C, Crystal Structure Of Cpn-Wt In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUQ|D Chain D, Crystal Structure Of Cpn-Wt In Complex With Adp From
Methanococcus Maripaludis
Length = 543
Score = 299 bits (765), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 183/514 (35%), Positives = 309/514 (60%), Gaps = 15/514 (2%)
Query: 16 GERARMASFVGAMAIADLVKTTLGPKGMDKIL-QSTGRGREVTVTNDGATILKSLHIDNP 74
G A+ + + IA+ V++TLGPKGMDK+L G +V VTNDG TIL+ + +++P
Sbjct: 17 GRDAQRMNILAGRIIAETVRSTLGPKGMDKMLVDDLG---DVVVTNDGVTILREMSVEHP 73
Query: 75 AAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARD 134
AAK+L++++K Q+ EVGDGTT+ VV+AGELLR+AE+L+ +HP ++ G++ AA+ A++
Sbjct: 74 AAKMLIEVAKTQEKEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVVKGYQAAAQKAQE 133
Query: 135 ALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQL---AVDAVMRLKGSTNL 191
L K + + A+ K L KIAMT+++ K + KE ++ AV AV+ +G +
Sbjct: 134 LL--KTIACEVGAQD-KEILTKIAMTSITGKGAEKAKEKLAEIIVEAVSAVVDDEGKVDK 190
Query: 192 ESIQIIKKPGGSLKDSFLDEGFILDK-KIGIGQPKRIENAKILVANTAMDTDKVKIYGAR 250
+ I+I KK G S+ D+ L +G ++DK ++ PK++ +AKI + N A++ + + A
Sbjct: 191 DLIKIEKKSGASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALLNCAIEIKETE-TDAE 249
Query: 251 VRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHA 310
+R+ +K E E++ +++ V +I A G N ++ I + + A GI+A
Sbjct: 250 IRITDPAKLMEFIEQEEKMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKEGIVAARRV 309
Query: 311 DFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVL 370
+E+LA TG + + + + LG L+EE I D +I + +A T+++
Sbjct: 310 KKSDMEKLAKATGANVITNIKDLSAQDLGDAGLVEERKISGDSMIFVEECKHPKAVTMLI 369
Query: 371 RGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELARKTPGKKSHA 430
RG + HV++E R++ DA+ V+ T+ D R++ GGG E+ ++ ++ E A G++ A
Sbjct: 370 RGTTEHVIEEVARAVDDAVGVVGCTIEDGRIVSGGGSTEVELSMKLREYAEGISGREQLA 429
Query: 431 IEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKEG--CPAGIDVISGSVGDMAELGI 488
+ AF+ AL IP T+A+NAGLD+ E++ ++RA H G C AG++V +G+V DM E G+
Sbjct: 430 VRAFADALEVIPRTLAENAGLDAIEILVKVRAAHASNGNKC-AGLNVFTGAVEDMCENGV 488
Query: 489 SESFKVKQAVLLSATEAAEMILRVDEIITCAPRR 522
E +VK + SA E+ EM+LR+D++I R
Sbjct: 489 VEPLRVKTQAIQSAAESTEMLLRIDDVIAAEKLR 522
>pdb|3RUS|A Chain A, Crystal Structure Of Cpn-Rls In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUS|B Chain B, Crystal Structure Of Cpn-Rls In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUS|C Chain C, Crystal Structure Of Cpn-Rls In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUS|D Chain D, Crystal Structure Of Cpn-Rls In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUV|A Chain A, Crystal Structure Of Cpn-Rls In Complex With Atp Analogue
From Methanococcus Maripaludis
pdb|3RUV|B Chain B, Crystal Structure Of Cpn-Rls In Complex With Atp Analogue
From Methanococcus Maripaludis
pdb|3RUV|C Chain C, Crystal Structure Of Cpn-Rls In Complex With Atp Analogue
From Methanococcus Maripaludis
pdb|3RUV|D Chain D, Crystal Structure Of Cpn-Rls In Complex With Atp Analogue
From Methanococcus Maripaludis
pdb|3RUW|A Chain A, Crystal Structure Of Cpn-Rls In Complex With Adp-Alfx From
Methanococcus Maripaludis
pdb|3RUW|B Chain B, Crystal Structure Of Cpn-Rls In Complex With Adp-Alfx From
Methanococcus Maripaludis
pdb|3RUW|C Chain C, Crystal Structure Of Cpn-Rls In Complex With Adp-Alfx From
Methanococcus Maripaludis
pdb|3RUW|D Chain D, Crystal Structure Of Cpn-Rls In Complex With Adp-Alfx From
Methanococcus Maripaludis
Length = 543
Score = 297 bits (760), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 183/514 (35%), Positives = 308/514 (59%), Gaps = 15/514 (2%)
Query: 16 GERARMASFVGAMAIADLVKTTLGPKGMDKIL-QSTGRGREVTVTNDGATILKSLHIDNP 74
G A+ + + IA+ V++TLGPKGMDK+L G +V VTNDG TIL+ + +++P
Sbjct: 17 GRDAQRMNILAGRIIAETVRSTLGPKGMDKMLVDDLG---DVVVTNDGVTILREMSVEHP 73
Query: 75 AAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARD 134
AAK+L++++K Q+ EVGDGTT+ VV+AGELLR+AE+L+ +HP ++ G++ AA+ A++
Sbjct: 74 AAKMLIEVAKTQEKEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVVKGYQAAAQKAQE 133
Query: 135 ALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQL---AVDAVMRLKGSTNL 191
L K + + A+ K L KIAMT+++ K + KE ++ AV AV+ +G +
Sbjct: 134 LL--KTIACEVGAQD-KEILTKIAMTSITGKGAEKAKEKLAEIIVEAVSAVVDDEGKVDK 190
Query: 192 ESIQIIKKPGGSLKDSFLDEGFILDK-KIGIGQPKRIENAKILVANTAMDTDKVKIYGAR 250
+ I+I KK G S+ D+ L +G ++DK ++ PK++ +AKI + N A++ + + A
Sbjct: 191 DLIKIEKKSGASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALLNCAIEIKETE-TDAE 249
Query: 251 VRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHA 310
+R+ +K E E++ +++ V +I A G N ++ I + + A GI+A
Sbjct: 250 IRITDPAKLMEFIEQEEKMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKEGIVAARRV 309
Query: 311 DFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVL 370
+E+LA TG + + + LG L+EE I D +I + +A T+++
Sbjct: 310 KKSDMEKLAKATGANVIAAIAALSAQDLGDAGLVEERKISGDSMIFVEECKHPKAVTMLI 369
Query: 371 RGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELARKTPGKKSHA 430
RG + HV++E R++ DA+ V+ T+ D R++ GGG E+ ++ ++ E A G++ A
Sbjct: 370 RGTTEHVIEEVARAVDDAVGVVGCTIEDGRIVSGGGSTEVELSMKLREYAEGISGREQLA 429
Query: 431 IEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKEG--CPAGIDVISGSVGDMAELGI 488
+ AF+ AL IP T+A+NAGLD+ E++ ++RA H G C AG++V +G+V DM E G+
Sbjct: 430 VRAFADALEVIPRTLAENAGLDAIEILVKVRAAHASNGNKC-AGLNVFTGAVEDMCENGV 488
Query: 489 SESFKVKQAVLLSATEAAEMILRVDEIITCAPRR 522
E +VK + SA E+ EM+LR+D++I R
Sbjct: 489 VEPLRVKTQAIQSAAESTEMLLRIDDVIAAEKLR 522
>pdb|3IZI|A Chain A, Mm-Cpn Rls With Atp
pdb|3IZI|B Chain B, Mm-Cpn Rls With Atp
pdb|3IZI|C Chain C, Mm-Cpn Rls With Atp
pdb|3IZI|D Chain D, Mm-Cpn Rls With Atp
pdb|3IZI|E Chain E, Mm-Cpn Rls With Atp
pdb|3IZI|F Chain F, Mm-Cpn Rls With Atp
pdb|3IZI|G Chain G, Mm-Cpn Rls With Atp
pdb|3IZI|H Chain H, Mm-Cpn Rls With Atp
pdb|3IZI|I Chain I, Mm-Cpn Rls With Atp
pdb|3IZI|J Chain J, Mm-Cpn Rls With Atp
pdb|3IZI|K Chain K, Mm-Cpn Rls With Atp
pdb|3IZI|L Chain L, Mm-Cpn Rls With Atp
pdb|3IZI|M Chain M, Mm-Cpn Rls With Atp
pdb|3IZI|N Chain N, Mm-Cpn Rls With Atp
pdb|3IZI|O Chain O, Mm-Cpn Rls With Atp
pdb|3IZI|P Chain P, Mm-Cpn Rls With Atp
pdb|3IZJ|A Chain A, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|B Chain B, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|C Chain C, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|D Chain D, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|E Chain E, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|F Chain F, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|G Chain G, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|H Chain H, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|I Chain I, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|J Chain J, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|K Chain K, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|L Chain L, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|M Chain M, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|N Chain N, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|O Chain O, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|P Chain P, Mm-Cpn Rls With Atp And Alfx
Length = 513
Score = 297 bits (760), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 182/508 (35%), Positives = 307/508 (60%), Gaps = 15/508 (2%)
Query: 16 GERARMASFVGAMAIADLVKTTLGPKGMDKIL-QSTGRGREVTVTNDGATILKSLHIDNP 74
G A+ + + IA+ V++TLGPKGMDK+L G +V VTNDG TIL+ + +++P
Sbjct: 11 GRDAQRMNILAGRIIAETVRSTLGPKGMDKMLVDDLG---DVVVTNDGVTILREMSVEHP 67
Query: 75 AAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARD 134
AAK+L++++K Q+ EVGDGTT+ VV+AGELLR+AE+L+ +HP ++ G++ AA+ A++
Sbjct: 68 AAKMLIEVAKTQEKEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVVKGYQAAAQKAQE 127
Query: 135 ALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQL---AVDAVMRLKGSTNL 191
L K + + A+ K L KIAMT+++ K + KE ++ AV AV+ +G +
Sbjct: 128 LL--KTIACEVGAQD-KEILTKIAMTSITGKGAEKAKEKLAEIIVEAVSAVVDDEGKVDK 184
Query: 192 ESIQIIKKPGGSLKDSFLDEGFILDK-KIGIGQPKRIENAKILVANTAMDTDKVKIYGAR 250
+ I+I KK G S+ D+ L +G ++DK ++ PK++ +AKI + N A++ + + A
Sbjct: 185 DLIKIEKKSGASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALLNCAIEIKETE-TDAE 243
Query: 251 VRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHA 310
+R+ +K E E++ +++ V +I A G N ++ I + + A GI+A
Sbjct: 244 IRITDPAKLMEFIEQEEKMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKEGIVAARRV 303
Query: 311 DFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVL 370
+E+LA TG + + + LG L+EE I D +I + +A T+++
Sbjct: 304 KKSDMEKLAKATGANVIAAIAALSAQDLGDAGLVEERKISGDSMIFVEECKHPKAVTMLI 363
Query: 371 RGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELARKTPGKKSHA 430
RG + HV++E R++ DA+ V+ T+ D R++ GGG E+ ++ ++ E A G++ A
Sbjct: 364 RGTTEHVIEEVARAVDDAVGVVGCTIEDGRIVSGGGSTEVELSMKLREYAEGISGREQLA 423
Query: 431 IEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKEG--CPAGIDVISGSVGDMAELGI 488
+ AF+ AL IP T+A+NAGLD+ E++ ++RA H G C AG++V +G+V DM E G+
Sbjct: 424 VRAFADALEVIPRTLAENAGLDAIEILVKVRAAHASNGNKC-AGLNVFTGAVEDMCENGV 482
Query: 489 SESFKVKQAVLLSATEAAEMILRVDEII 516
E +VK + SA E+ EM+LR+D++I
Sbjct: 483 VEPLRVKTQAIQSAAESTEMLLRIDDVI 510
>pdb|3IYG|A Chain A, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 529
Score = 295 bits (754), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 193/538 (35%), Positives = 309/538 (57%), Gaps = 32/538 (5%)
Query: 6 IFRDEANEEKGERARMASFVGAMAIADLVKTTLGPKGMDKIL-QSTGRGREVTVTNDGAT 64
+F D + GE R + + A +IA++VK++LGP G+DK+L G +VT+TNDGAT
Sbjct: 1 VFGDRST---GEAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIG---DVTITNDGAT 54
Query: 65 ILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISG 124
ILK L +++PAAKVL +++ +QD EVGDGTTSVV++A ELL+ A++LV KIHP ++ISG
Sbjct: 55 ILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISG 114
Query: 125 FRMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAVMR 184
+R+A + A + + ++ N + E + L+ A T++SSK++ + + F L VDAV+
Sbjct: 115 YRLACKEAVRYISENLIINTD--ELGRDCLINAAKTSMSSKVIGINGDFFANLVVDAVLA 172
Query: 185 LKGS-------TNLESIQIIKKPGGSLKDSFLDEGFILDKKIGI-GQPKRIENAKILVAN 236
+K + + SI ++K G S +S L G+ L+ +G G PKRI NAKI +
Sbjct: 173 IKYTDIRGQPRYPVNSINVLKAHGRSQMESMLINGYALNCVVGSQGMPKRIVNAKIACLD 232
Query: 237 TAMDTDKVKIYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPE 296
++ K+K+ G +V + K +I E +E++QKI+A G N + I +
Sbjct: 233 FSLQKTKMKL-GVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCL 291
Query: 297 ELFADAGILAIEHADFDGIERLALVTGGEIASTFDNP------ESVKLGHCKLIEEIMIG 350
+ F +AG +A+ ++R+A +G + ST N E+ LG + + + I
Sbjct: 292 KYFVEAGAMAVRRVLKRDLKRIAKASGATVLSTLANLEGEETFEASMLGQAEEVVQERIC 351
Query: 351 EDKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEM 410
+D+LI + + +++LRGA+ + DE ERSLHDALCV+ + + V+ GGG E
Sbjct: 352 DDELILIKNTKARTSASVILRGANDFMCDEMERSLHDALCVVKRVLESKSVVPGGGAVEA 411
Query: 411 VMAKEVDELARKTPGKKSHAIEAFSRALVAIPTTIADNAGLDSAELIAQLRAEH------ 464
++ ++ A ++ AI F+R+L+ IP T+A NA DS +L+A+LRA H
Sbjct: 412 ALSIYLENYATSMGSREQLAIAEFARSLLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVN 471
Query: 465 --QKEGCPAGIDVISGSVGDMAELGISESFKVKQAVLLSATEAAEMILRVDEIITCAP 520
+K G+D+++G D + G+ E VK L ATEAA ILR+D++I P
Sbjct: 472 PERKNLKWIGLDLVNGKPRDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLIKLHP 529
>pdb|3IYF|A Chain A, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|B Chain B, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|C Chain C, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|D Chain D, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|E Chain E, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|F Chain F, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|G Chain G, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|H Chain H, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|I Chain I, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|J Chain J, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|K Chain K, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|L Chain L, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|M Chain M, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|N Chain N, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|O Chain O, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|P Chain P, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3KFE|A Chain A, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|B Chain B, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|C Chain C, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|D Chain D, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|E Chain E, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|F Chain F, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|G Chain G, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|H Chain H, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFK|A Chain A, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFK|B Chain B, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFK|C Chain C, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFK|D Chain D, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
Length = 521
Score = 288 bits (736), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 180/514 (35%), Positives = 298/514 (57%), Gaps = 37/514 (7%)
Query: 16 GERARMASFVGAMAIADLVKTTLGPKGMDKIL-QSTGRGREVTVTNDGATILKSLHIDNP 74
G A+ + + IA+ V++TLGPKGMDK+L G +V VTNDG TIL+ + +++P
Sbjct: 17 GRDAQRMNILAGRIIAETVRSTLGPKGMDKMLVDDLG---DVVVTNDGVTILREMSVEHP 73
Query: 75 AAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARD 134
AAK+L++++K Q+ EVGDGTT+ VV+AGELLR+AE+L+ +HP ++ G++ AA+ A++
Sbjct: 74 AAKMLIEVAKTQEKEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVVKGYQAAAQKAQE 133
Query: 135 ALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQL---AVDAVMRLKGSTNL 191
L K + + A+ K L KIAMT+++ K + KE ++ AV AV+ +G +
Sbjct: 134 LL--KTIACEVGAQD-KEILTKIAMTSITGKGAEKAKEKLAEIIVEAVSAVVDDEGKVDK 190
Query: 192 ESIQIIKKPGGSLKDSFLDEGFILDK-KIGIGQPKRIENAKILVANTAMDTDKVKIYGAR 250
+ I+I KK G S+ D+ L +G ++DK ++ PK++ +AKI + N A
Sbjct: 191 DLIKIEKKSGASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALLNCA------------ 238
Query: 251 VRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHA 310
IE + +++ V +I A G N ++ I + + A GI+A
Sbjct: 239 -----------IEETASEMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKEGIVAARRV 287
Query: 311 DFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVL 370
+E+LA TG + + + + LG L+EE I D +I + +A T+++
Sbjct: 288 KKSDMEKLAKATGANVITNIKDLSAQDLGDAGLVEERKISGDSMIFVEECKHPKAVTMLI 347
Query: 371 RGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELARKTPGKKSHA 430
RG + HV++E R++ DA+ V+ T+ D R++ GGG E+ ++ ++ E A G++ A
Sbjct: 348 RGTTEHVIEEVARAVDDAVGVVGCTIEDGRIVSGGGSTEVELSMKLREYAEGISGREQLA 407
Query: 431 IEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKEG--CPAGIDVISGSVGDMAELGI 488
+ AF+ AL IP T+A+NAGLD+ E++ ++RA H G C AG++V +G+V DM E G+
Sbjct: 408 VRAFADALEVIPRTLAENAGLDAIEILVKVRAAHASNGNKC-AGLNVFTGAVEDMCENGV 466
Query: 489 SESFKVKQAVLLSATEAAEMILRVDEIITCAPRR 522
E +VK + SA E+ EM+LR+D++I R
Sbjct: 467 VEPLRVKTQAIQSAAESTEMLLRIDDVIAAEKLR 500
>pdb|3IZN|A Chain A, Mm-Cpn Deltalid With Atp
pdb|3IZN|B Chain B, Mm-Cpn Deltalid With Atp
pdb|3IZN|C Chain C, Mm-Cpn Deltalid With Atp
pdb|3IZN|D Chain D, Mm-Cpn Deltalid With Atp
pdb|3IZN|E Chain E, Mm-Cpn Deltalid With Atp
pdb|3IZN|F Chain F, Mm-Cpn Deltalid With Atp
pdb|3IZN|G Chain G, Mm-Cpn Deltalid With Atp
pdb|3IZN|H Chain H, Mm-Cpn Deltalid With Atp
pdb|3IZN|I Chain I, Mm-Cpn Deltalid With Atp
pdb|3IZN|J Chain J, Mm-Cpn Deltalid With Atp
pdb|3IZN|K Chain K, Mm-Cpn Deltalid With Atp
pdb|3IZN|L Chain L, Mm-Cpn Deltalid With Atp
pdb|3IZN|M Chain M, Mm-Cpn Deltalid With Atp
pdb|3IZN|N Chain N, Mm-Cpn Deltalid With Atp
pdb|3IZN|O Chain O, Mm-Cpn Deltalid With Atp
pdb|3IZN|P Chain P, Mm-Cpn Deltalid With Atp
pdb|3J03|A Chain A, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|B Chain B, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|C Chain C, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|D Chain D, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|E Chain E, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|F Chain F, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|G Chain G, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|H Chain H, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|I Chain I, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|J Chain J, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|K Chain K, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|L Chain L, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|M Chain M, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|N Chain N, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|O Chain O, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|P Chain P, Lidless Mm-Cpn In The Closed State With AtpALFX
Length = 491
Score = 287 bits (735), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 179/508 (35%), Positives = 297/508 (58%), Gaps = 37/508 (7%)
Query: 16 GERARMASFVGAMAIADLVKTTLGPKGMDKIL-QSTGRGREVTVTNDGATILKSLHIDNP 74
G A+ + + IA+ V++TLGPKGMDK+L G +V VTNDG TIL+ + +++P
Sbjct: 11 GRDAQRMNILAGRIIAETVRSTLGPKGMDKMLVDDLG---DVVVTNDGVTILREMSVEHP 67
Query: 75 AAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARD 134
AAK+L++++K Q+ EVGDGTT+ VV+AGELLR+AE+L+ +HP ++ G++ AA+ A++
Sbjct: 68 AAKMLIEVAKTQEKEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVVKGYQAAAQKAQE 127
Query: 135 ALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQL---AVDAVMRLKGSTNL 191
L K + + A+ K L KIAMT+++ K + KE ++ AV AV+ +G +
Sbjct: 128 LL--KTIACEVGAQD-KEILTKIAMTSITGKGAEKAKEKLAEIIVEAVSAVVDDEGKVDK 184
Query: 192 ESIQIIKKPGGSLKDSFLDEGFILDK-KIGIGQPKRIENAKILVANTAMDTDKVKIYGAR 250
+ I+I KK G S+ D+ L +G ++DK ++ PK++ +AKI + N A
Sbjct: 185 DLIKIEKKSGASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALLNCA------------ 232
Query: 251 VRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHA 310
IE + +++ V +I A G N ++ I + + A GI+A
Sbjct: 233 -----------IEETASEMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKEGIVAARRV 281
Query: 311 DFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVL 370
+E+LA TG + + + + LG L+EE I D +I + +A T+++
Sbjct: 282 KKSDMEKLAKATGANVITNIKDLSAQDLGDAGLVEERKISGDSMIFVEECKHPKAVTMLI 341
Query: 371 RGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELARKTPGKKSHA 430
RG + HV++E R++ DA+ V+ T+ D R++ GGG E+ ++ ++ E A G++ A
Sbjct: 342 RGTTEHVIEEVARAVDDAVGVVGCTIEDGRIVSGGGSTEVELSMKLREYAEGISGREQLA 401
Query: 431 IEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKEG--CPAGIDVISGSVGDMAELGI 488
+ AF+ AL IP T+A+NAGLD+ E++ ++RA H G C AG++V +G+V DM E G+
Sbjct: 402 VRAFADALEVIPRTLAENAGLDAIEILVKVRAAHASNGNKC-AGLNVFTGAVEDMCENGV 460
Query: 489 SESFKVKQAVLLSATEAAEMILRVDEII 516
E +VK + SA E+ EM+LR+D++I
Sbjct: 461 VEPLRVKTQAIQSAAESTEMLLRIDDVI 488
>pdb|3IZK|A Chain A, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|B Chain B, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|C Chain C, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|D Chain D, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|E Chain E, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|F Chain F, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|G Chain G, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|H Chain H, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|I Chain I, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|J Chain J, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|K Chain K, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|L Chain L, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|M Chain M, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|N Chain N, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|O Chain O, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|P Chain P, Mm-Cpn Rls Deltalid With Atp
pdb|3IZL|A Chain A, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|B Chain B, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|C Chain C, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|D Chain D, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|E Chain E, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|F Chain F, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|G Chain G, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|H Chain H, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|I Chain I, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|J Chain J, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|K Chain K, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|L Chain L, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|M Chain M, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|N Chain N, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|O Chain O, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|P Chain P, Mm-Cpn Rls Deltalid With Atp And Alfx
Length = 491
Score = 285 bits (730), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 179/508 (35%), Positives = 296/508 (58%), Gaps = 37/508 (7%)
Query: 16 GERARMASFVGAMAIADLVKTTLGPKGMDKIL-QSTGRGREVTVTNDGATILKSLHIDNP 74
G A+ + + IA+ V++TLGPKGMDK+L G +V VTNDG TIL+ + +++P
Sbjct: 11 GRDAQRMNILAGRIIAETVRSTLGPKGMDKMLVDDLG---DVVVTNDGVTILREMSVEHP 67
Query: 75 AAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARD 134
AAK+L++++K Q+ EVGDGTT+ VV+AGELLR+AE+L+ +HP ++ G++ AA+ A++
Sbjct: 68 AAKMLIEVAKTQEKEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVVKGYQAAAQKAQE 127
Query: 135 ALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQL---AVDAVMRLKGSTNL 191
L K + + A+ K L KIAMT+++ K + KE ++ AV AV+ +G +
Sbjct: 128 LL--KTIACEVGAQD-KEILTKIAMTSITGKGAEKAKEKLAEIIVEAVSAVVDDEGKVDK 184
Query: 192 ESIQIIKKPGGSLKDSFLDEGFILDK-KIGIGQPKRIENAKILVANTAMDTDKVKIYGAR 250
+ I+I KK G S+ D+ L +G ++DK ++ PK++ +AKI + N A
Sbjct: 185 DLIKIEKKSGASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALLNCA------------ 232
Query: 251 VRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHA 310
IE + +++ V +I A G N ++ I + + A GI+A
Sbjct: 233 -----------IEETASEMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKEGIVAARRV 281
Query: 311 DFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVL 370
+E+LA TG + + + LG L+EE I D +I + +A T+++
Sbjct: 282 KKSDMEKLAKATGANVIAAIAALSAQDLGDAGLVEERKISGDSMIFVEECKHPKAVTMLI 341
Query: 371 RGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELARKTPGKKSHA 430
RG + HV++E R++ DA+ V+ T+ D R++ GGG E+ ++ ++ E A G++ A
Sbjct: 342 RGTTEHVIEEVARAVDDAVGVVGCTIEDGRIVSGGGSTEVELSMKLREYAEGISGREQLA 401
Query: 431 IEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKEG--CPAGIDVISGSVGDMAELGI 488
+ AF+ AL IP T+A+NAGLD+ E++ ++RA H G C AG++V +G+V DM E G+
Sbjct: 402 VRAFADALEVIPRTLAENAGLDAIEILVKVRAAHASNGNKC-AGLNVFTGAVEDMCENGV 460
Query: 489 SESFKVKQAVLLSATEAAEMILRVDEII 516
E +VK + SA E+ EM+LR+D++I
Sbjct: 461 VEPLRVKTQAIQSAAESTEMLLRIDDVI 488
>pdb|3J02|A Chain A, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|B Chain B, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|C Chain C, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|D Chain D, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|E Chain E, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|F Chain F, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|G Chain G, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|H Chain H, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|I Chain I, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|J Chain J, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|K Chain K, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|L Chain L, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|M Chain M, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|N Chain N, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|O Chain O, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|P Chain P, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
Length = 491
Score = 284 bits (727), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 178/508 (35%), Positives = 296/508 (58%), Gaps = 37/508 (7%)
Query: 16 GERARMASFVGAMAIADLVKTTLGPKGMDKIL-QSTGRGREVTVTNDGATILKSLHIDNP 74
G A+ + + IA+ V++TLGPKGMDK+L G +V VTNDG TIL+ + +++P
Sbjct: 11 GRDAQRMNILAGRIIAETVRSTLGPKGMDKMLVDDLG---DVVVTNDGVTILREMSVEHP 67
Query: 75 AAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARD 134
AAK+L++++K Q+ EVGDGTT+ VV+AGELLR+AE+L+ +HP ++ G++ AA+ A++
Sbjct: 68 AAKMLIEVAKTQEKEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVVKGYQAAAQKAQE 127
Query: 135 ALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQL---AVDAVMRLKGSTNL 191
L K + + A+ K L KIAMT+++ K + KE ++ AV AV+ +G +
Sbjct: 128 LL--KTIACEVGAQD-KEILTKIAMTSITGKGAEKAKEKLAEIIVEAVSAVVDDEGKVDK 184
Query: 192 ESIQIIKKPGGSLKDSFLDEGFILDK-KIGIGQPKRIENAKILVANTAMDTDKVKIYGAR 250
+ I+I KK G S+ D+ L +G ++DK ++ PK++ +AKI + N A
Sbjct: 185 DLIKIEKKSGASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALLNCA------------ 232
Query: 251 VRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHA 310
IE + +++ V +I A G N ++ I + + A GI+A
Sbjct: 233 -----------IEETASEMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKEGIVAARRV 281
Query: 311 DFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVL 370
+E+LA TG + + + + LG L+EE I D +I + +A T+++
Sbjct: 282 KKSDMEKLAKATGANVITNIKDLSAQDLGDAGLVEERKISGDSMIFVEECKHPKAVTMLI 341
Query: 371 RGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELARKTPGKKSHA 430
RG + HV++E R++ A+ V+ T+ D R++ GGG E+ ++ ++ E A G++ A
Sbjct: 342 RGTTEHVIEEVARAVDAAVGVVGCTIEDGRIVSGGGSTEVELSMKLREYAEGISGREQLA 401
Query: 431 IEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKEG--CPAGIDVISGSVGDMAELGI 488
+ AF+ AL IP T+A+NAGLD+ E++ ++RA H G C AG++V +G+V DM E G+
Sbjct: 402 VRAFADALEVIPRTLAENAGLDAIEILVKVRAAHASNGNKC-AGLNVFTGAVEDMCENGV 460
Query: 489 SESFKVKQAVLLSATEAAEMILRVDEII 516
E +VK + SA E+ EM+LR+D++I
Sbjct: 461 VEPLRVKTQAIQSAAESTEMLLRIDDVI 488
>pdb|3P9D|G Chain G, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|O Chain O, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|GG Chain g, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|OO Chain o, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|G Chain G, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|O Chain O, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|GG Chain g, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|OO Chain o, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 550
Score = 281 bits (718), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 175/517 (33%), Positives = 284/517 (54%), Gaps = 8/517 (1%)
Query: 6 IFRDEANEEKGERARMASFVGAMAIADLVKTTLGPKGMDKILQSTGRGREVTVTNDGATI 65
+ ++ + +G+ +++ +A+ + +K TLGP G D ++ ++ + + T++NDGATI
Sbjct: 12 VLKEGTDASQGKGQIISNINACVAVQEALKPTLGPLGSDILIVTSNQ--KTTISNDGATI 69
Query: 66 LKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGF 125
LK L + +PAAK LVDIS+ QD EVGDGTTSV +LAGEL++EA+ + I I+ G+
Sbjct: 70 LKLLDVVHPAAKTLVDISRAQDAEVGDGTTSVTILAGELMKEAKPFLEEGISSHLIMKGY 129
Query: 126 RMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAVMRL 185
R A A + + + VD + + L + A T +SSK++ + + F ++ VDAV+ L
Sbjct: 130 RKAVSLAVEKINELAVDITSEKSSGRELLERCARTAMSSKLIHNNADFFVKMCVDAVLSL 189
Query: 186 -KGSTNLESIQIIKKPGGSLKDSFLDEGFILDKKIGIG----QPKRIENAKILVANTAMD 240
+ + + I I K PGG++++S G K QPK+ N KIL N ++
Sbjct: 190 DRNDLDDKLIGIKKIPGGAMEESLFINGVAFKKTFSYAGFEQQPKKFNNPKILSLNVELE 249
Query: 241 TDKVKIYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFA 300
K + A VRV+ + I AE Q + EK++++ G N +++ I + + FA
Sbjct: 250 L-KAEKDNAEVRVEHVEDYQAIVDAEWQLIFEKLRQVEETGANIVLSKLPIGDLATQFFA 308
Query: 301 DAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGV 360
D I D + R+ GG I ST + + LG C L EE+ IG ++ F G
Sbjct: 309 DRNIFCAGRVSADDMNRVIQAVGGSIQSTTSDIKPEHLGTCALFEEMQIGSERYNLFQGC 368
Query: 361 EMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELA 420
+ CT++LRG + V+ E ERSLHDA+ ++ + + + ++ GGG EM ++K + + +
Sbjct: 369 PQAKTCTLLLRGGAEQVIAEVERSLHDAIMIVKRALQNKLIVAGGGATEMEVSKCLRDYS 428
Query: 421 RKTPGKKSHAIEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKEGCPAGIDVISGSV 480
+ GK+ I AF++AL IP + +NAG D+ E++ +LR H K G+ + ++
Sbjct: 429 KTIAGKQQMIINAFAKALEVIPRQLCENAGFDAIEILNKLRLAHSKGEKWYGVVFETENI 488
Query: 481 GDMAELGISESFKVKQAVLLSATEAAEMILRVDEIIT 517
GD + E VK L SATEA +IL VDE IT
Sbjct: 489 GDNFAKFVWEPALVKINALNSATEATNLILSVDETIT 525
>pdb|3P9D|E Chain E, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|M Chain M, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|EE Chain e, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|MM Chain m, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|E Chain E, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|M Chain M, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|EE Chain e, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|MM Chain m, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 562
Score = 281 bits (718), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 181/528 (34%), Positives = 296/528 (56%), Gaps = 20/528 (3%)
Query: 6 IFRDEANEEK--GERARMASFVGAMAIADLVKTTLGPKGMDKILQSTGRGREVTVTNDGA 63
I +D+ N+++ G A+ + + A ++A ++KT+LGP+G+DKIL S E+T+TNDGA
Sbjct: 31 IVKDQGNKKRQHGLEAKKSHILAARSVASIIKTSLGPRGLDKILISPDG--EITITNDGA 88
Query: 64 TILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIIS 123
TIL + +DN AK+LV +SK QDDE+GDGTT VVVLA LL +A +L+ IHP+ I +
Sbjct: 89 TILSQMELDNEIAKLLVQLSKSQDDEIGDGTTGVVVLASALLDQALELIQKGIHPIKIAN 148
Query: 124 GFRMAAECARDALLQKVVD-NKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAV 182
GF AA+ A L + D + N E F+ L++ A T+L SKI+S+D + F ++AV+AV
Sbjct: 149 GFDEAAKLAISKLEETCDDISASNDELFRDFLLRAAKTSLGSKIVSKDHDRFAEMAVEAV 208
Query: 183 MRL----KGSTNLESIQIIKKPGGSLKDSFLDEGFILDKKIGIGQ-PKRI------ENAK 231
+ + + + + I++ + GGS+ DS L G ILDK Q PK + + K
Sbjct: 209 INVMDKDRKDVDFDLIKMQGRVGGSISDSKLINGVILDKDFSHPQMPKCVLPKEGSDGVK 268
Query: 232 ILVANTAMDTDKVKIYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLI 291
+ + + K K ++ + S+ + +++ E+ K +E + + G + + +
Sbjct: 269 LAILTCPFEPPKPKTK-HKLDISSVEEYQKLQTYEQDKFKEMIDDVKKAGADVVICQWGF 327
Query: 292 YNFPEELFADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIG- 350
+ L + A+ +E +A+ T G I F + KLG C I E G
Sbjct: 328 DDEANHLLLQNDLPAVRWVGGQELEHIAISTNGRIVPRFQDLSKDKLGTCSRIYEQEFGT 387
Query: 351 -EDKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPE 409
+D+++ + + T +RG++ ++DEAER+LHD+LCV+ V DSRV++GGG E
Sbjct: 388 TKDRMLIIEQSKETKTVTCFVRGSNKMIVDEAERALHDSLCVVRNLVKDSRVVYGGGAAE 447
Query: 410 MVMAKEVDELARKTPGKKSHAIEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKEGC 469
+ M+ V E A K G +A F++AL IP T+A+N+GLD ++ L+++ KE
Sbjct: 448 VTMSLAVSEEADKQRGIDQYAFRGFAQALDTIPMTLAENSGLDPIGTLSTLKSKQLKEKI 507
Query: 470 PA-GIDVISGSVGDMAELGISESFKVKQAVLLSATEAAEMILRVDEII 516
G+D + DM EL + + F K+ +L AT+ MIL++D +I
Sbjct: 508 SNIGVDCLGYGSNDMKELFVVDPFIGKKQQILLATQLCRMILKIDNVI 555
>pdb|3IYG|E Chain E, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 515
Score = 279 bits (713), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 182/511 (35%), Positives = 290/511 (56%), Gaps = 18/511 (3%)
Query: 16 GERARMASFVGAMAIADLVKTTLGPKGMDKILQSTGRGREVTVTNDGATILKSLHIDNPA 75
G A + + A A+A+ +KT+LGP G+DK++ + +VTVTNDGATIL + +D+
Sbjct: 8 GLEALKSHIMAAKAVANTMKTSLGPNGLDKMM--VDKDGDVTVTNDGATILSMMDVDHQI 65
Query: 76 AKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECA--- 132
AK++V++SK QDDE+GDGTT VVVLAG LL EAE+L+ IHP+ I G+ AA A
Sbjct: 66 AKLMVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARIAIEH 125
Query: 133 RDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAVMRL----KGS 188
D + V+ + +N E L++ A TTL SK+++ ++AV+AV+ + +
Sbjct: 126 LDKISDSVLVDMKNTEP----LIQTAKTTLGSKVVNSCHRQMAEIAVNAVLTVADMQRRD 181
Query: 189 TNLESIQIIKKPGGSLKDSFLDEGFILDKKIGIGQ-PKRIENAKILVANTAMDTDKVKIY 247
+ E I++ K GG L+D+ L +G I+DK Q PK++E+AKI + + K K
Sbjct: 182 VDFELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMPKQVEDAKIAILTCPFEPPKPKTK 241
Query: 248 GARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAI 307
++ V S+ ++ EK+K E +++I G N V + + L + A+
Sbjct: 242 -HKLDVTSVEDFKALQKYEKEKFEEMIRQIKETGANLAVCQWGFDDEANHLLLQNDLPAV 300
Query: 308 EHADFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIG--EDKLIHFSGVEMGQA 365
IE +A+ TGG I F + KLG L++EI G +DK++ + +A
Sbjct: 301 RWVGGPEIELIAIATGGRIVPRFSELTAEKLGFAGLVKEISFGTTKDKMLVIEQCKNSRA 360
Query: 366 CTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELARKTPG 425
TI +RG + +++EA+RSLHDALCV+ + D+RV++GGG E+ A V + A K P
Sbjct: 361 VTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQEADKCPT 420
Query: 426 KKSHAIEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKEGCPA-GIDVISGSVGDMA 484
+ +A+ AF+ AL IP +A+N+G++ + + ++RA KE PA GID + DM
Sbjct: 421 LEQYAMRAFADALEVIPMALAENSGMNPIQTMTEVRARQVKEVNPALGIDCLHKGTNDMK 480
Query: 485 ELGISESFKVKQAVLLSATEAAEMILRVDEI 515
+ E+ K+ + AT+ MIL++D+I
Sbjct: 481 HQHVIETLIGKKQQISLATQMVRMILKIDDI 511
>pdb|3P9D|A Chain A, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|I Chain I, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|AA Chain a, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|II Chain i, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|A Chain A, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|I Chain I, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|AA Chain a, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|II Chain i, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 559
Score = 273 bits (697), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 184/536 (34%), Positives = 290/536 (54%), Gaps = 39/536 (7%)
Query: 16 GERARMASFVGAMAIADLVKTTLGPKGMDKIL-QSTGRGREVTVTNDGATILKSLHIDNP 74
G+ R + + MA+A++VK++LGP G+DK+L G + TVTNDGATIL L + +P
Sbjct: 22 GDDIRNQNVLATMAVANVVKSSLGPVGLDKMLVDDIG---DFTVTNDGATILSLLDVQHP 78
Query: 75 AAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAA-ECAR 133
A K+LV++++ QD E+GDGTTSVV++A ELL+ A +LV KIHP TII+GFR+A E R
Sbjct: 79 AGKILVELAQQQDREIGDGTTSVVIIASELLKRANELVKNKIHPTTIITGFRVALREAIR 138
Query: 134 --DALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAVMRLKGSTN- 190
+ +L VD K L+ IA T++SSKI+ D + F + VDA++ +K +
Sbjct: 139 FINEVLSTSVDT-----LGKETLINIAKTSMSSKIIGADSDFFSNMVVDALLAVKTQNSK 193
Query: 191 ------LESIQIIKKPGGSLKDSFLDEGFILDKKIGI-GQPKRIENAKILVANTAMDTDK 243
++++ ++K G S +S L G+ L+ + PKRI + +A ++ K
Sbjct: 194 GEIKYPVKAVNVLKAHGKSATESLLVPGYALNCTVASQAMPKRIAGGNVKIACLDLNLQK 253
Query: 244 VKI-YGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADA 302
++ G ++ +D + +I E + E+V+KII G + + I + + F +A
Sbjct: 254 ARMAMGVQINIDDPEQLEQIRKREAGIVLERVKKIIDAGAQVVLTTKGIDDLCLKEFVEA 313
Query: 303 GILAIEHADFDGIERLALVTGGEIASTFDNP------ESVKLGHCKLIEEIMIGEDKLIH 356
I+ + + + R+A TG + S+ N ES LG C + + +D+ I
Sbjct: 314 KIMGVRRCKKEDLRRIARATGATLVSSMSNLEGEETFESSYLGLCDEVVQAKFSDDECIL 373
Query: 357 FSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEV 416
G + +I+LRGA+ + LDE ERSLHD+L V+ +T+ V+ GGG E + +
Sbjct: 374 IKGTSKHSSSSIILRGANDYSLDEMERSLHDSLSVVKRTLESGNVVPGGGCVEAALNIYL 433
Query: 417 DELARKTPGKKSHAIEAFSRALVAIPTTIADNAGLDSAELIAQLRAEH------------ 464
D A ++ AI F+ AL+ IP T+A NA DS+EL+A+LR+ H
Sbjct: 434 DNFATTVGSREQLAIAEFAAALLIIPKTLAVNAAKDSSELVAKLRSYHAASQMAKPEDVK 493
Query: 465 QKEGCPAGIDVISGSVGDMAELGISESFKVKQAVLLSATEAAEMILRVDEIITCAP 520
++ G+D+I G + D G+ E K L SA EA ILR+D +IT P
Sbjct: 494 RRSYRNYGLDLIRGKIVDEIHAGVLEPTISKVKSLKSALEACVAILRIDTMITVDP 549
>pdb|3IYG|D Chain D, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 518
Score = 266 bits (679), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 174/518 (33%), Positives = 286/518 (55%), Gaps = 20/518 (3%)
Query: 12 NEEKGERARMASFVGAMAIADLVKTTLGPKGMDKILQSTGRGREVTVTNDGATILKSLHI 71
+ +K + R ++ A A+AD ++T+LGPKGMDK++Q G+G +VT+TNDGATILK + +
Sbjct: 5 DRDKPAQIRFSNISAAKAVADAIRTSLGPKGMDKMIQD-GKG-DVTITNDGATILKQMQV 62
Query: 72 DNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAEC 131
+PAA++LV++SK QD E GDGTTSVV++AG LL KL+ IHP I F+ A E
Sbjct: 63 LHPAARMLVELSKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEK 122
Query: 132 ARDALLQKVVDNKENAE-TFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAVMRL----- 185
++ + D E + + L+ A T+L+SK++SQ ++VDAVM++
Sbjct: 123 G----IEILTDMSRPVELSDRETLLNSAATSLNSKVVSQYSSLLSPMSVDAVMKVIDPAT 178
Query: 186 KGSTNLESIQIIKKPGGSLKDSFLDEGFILDKKIGIGQPKRIENAKILVANTAMDTDKVK 245
S +L I+I+KK GG++ D L EG +L +K+ R+E AKI + + K
Sbjct: 179 ATSVDLRDIKIVKKLGGTIDDCELVEGLVLTQKVANSGITRVEKAKIGLIQFCLSAPKTD 238
Query: 246 IYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCF-----VNRQLIYNFPEELFA 300
+ ++ V + + E+ + V++I G N + R + +
Sbjct: 239 MDN-QIVVSDYVQMDRVLREERAYILNLVKQIKKTGCNVLLIQKSILRDALSDLALHFLN 297
Query: 301 DAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMI-GEDKLIHFSG 359
I+ ++ + + IE + G + + D + LG +L EE+ + G KLI +G
Sbjct: 298 KMKIMVVKDIEREDIEFICKTIGTKPVAHVDQFTADMLGSAELAEEVSLNGSGKLIKITG 357
Query: 360 V-EMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDE 418
G+ TIV+RG++ V++EAERS+HDALCV+ V ++ GGG PE+ +A + E
Sbjct: 358 CASPGKTVTIVVRGSNKLVIEEAERSIHDALCVIRCLVKKRALIAGGGAPEIELALRLTE 417
Query: 419 LARKTPGKKSHAIEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKEGCPAGIDVISG 478
+R G +S+ I AF+ A+ IP+T+A+NAGL+ + +LR H + GI+V G
Sbjct: 418 YSRTLSGMESYCIRAFADAMEVIPSTLAENAGLNPISTVTELRNRHAQGEKTTGINVRKG 477
Query: 479 SVGDMAELGISESFKVKQAVLLSATEAAEMILRVDEII 516
+ ++ E + + V + L ATE IL++D+++
Sbjct: 478 GISNILEELVVQPLLVSVSALTLATETVRSILKIDDVV 515
>pdb|3AQ1|B Chain B, Open State Monomer Of A Group Ii Chaperonin From
Methanococcoides Burtonii
Length = 500
Score = 265 bits (677), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 162/470 (34%), Positives = 269/470 (57%), Gaps = 12/470 (2%)
Query: 55 EVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAA 114
++ +TNDGATILK + I +PAAK++V++SK QD EVGDGTT+ VL+GELL +AE+L+
Sbjct: 8 DIVITNDGATILKEMDIQHPAAKMIVEVSKTQDAEVGDGTTTAAVLSGELLSKAEELIMK 67
Query: 115 KIHPMTIISGFRMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHF 174
+H I G+R AAE R+ L + + E + L+KIA T ++ K KE
Sbjct: 68 GVHSTIISEGYRHAAEKCREILETITIAISPDDE---AALIKIAGTAITGKGAEAYKEKL 124
Query: 175 GQLAVDAVMRLKGSTN-------LESIQIIKKPGGSLKDSFLDEGFILDK-KIGIGQPKR 226
L V AV + LE+I+I K+ GGS+ DS L +G ++DK + P++
Sbjct: 125 SALTVKAVRSIVEEEEDGLKVNVLENIKIEKRAGGSIDDSELIDGLVIDKERSHPNMPEK 184
Query: 227 IENAKILVANTAMDTDKVKIYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFV 286
+ENAKIL+ + ++ K ++ + +++ S + E++ MRE +K+IA G N
Sbjct: 185 VENAKILLLSCPVEFRKTEV-DSEIKITSPGQMQLFLDQEEKMMREMAEKVIASGANVVF 243
Query: 287 NRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEE 346
++ I + + AGI A+ ++RL+ VTG I D + +G L+EE
Sbjct: 244 CQKGIDDMAQYYIEKAGIYAVRRVKKSDLKRLSKVTGATIIQDLDQITTEDVGTAGLVEE 303
Query: 347 IMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGG 406
+ K+ + +G + +A T++L G + HV+D + +L+DAL V+ + D +V+ GGG
Sbjct: 304 KEVRGGKMTYVTGCQNSKAVTVLLHGGTEHVVDSLDHALNDALHVVGVVIEDGKVVVGGG 363
Query: 407 WPEMVMAKEVDELARKTPGKKSHAIEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQK 466
E+ ++ + E A G++ A+ F+ AL IP +A+NAGLD +++ +LR++H+K
Sbjct: 364 SSEVELSLRLSEYASTLKGREQLAVSKFAEALEVIPVALAENAGLDPIDIMVELRSQHEK 423
Query: 467 EGCPAGIDVISGSVGDMAELGISESFKVKQAVLLSATEAAEMILRVDEII 516
AG++V +G V DM E + E ++K + +A EA MILR+D+++
Sbjct: 424 GNKNAGLNVYTGEVVDMWENDVIEPLRIKTQAINAAMEATVMILRIDDVV 473
>pdb|3P9D|D Chain D, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|L Chain L, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|DD Chain d, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|LL Chain l, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|D Chain D, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|L Chain L, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|DD Chain d, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|LL Chain l, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 528
Score = 246 bits (628), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 168/534 (31%), Positives = 285/534 (53%), Gaps = 52/534 (9%)
Query: 12 NEEKGERARMASFVGAMAIADLVKTTLGPKGMDKILQSTGRGREVTVTNDGATILKSLHI 71
N+EK + R A+ + A ++AD ++T+LGPKGMDK+++ T RG E+ ++NDG TILK + I
Sbjct: 13 NKEKPQEVRKANIIAARSVADAIRTSLGPKGMDKMIK-TSRG-EIIISNDGHTILKQMAI 70
Query: 72 DNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAEC 131
+P A++LV++S QD E GDGTTSVV+L G LL AE+L+ IHP I F+ AA+
Sbjct: 71 LHPVARMLVEVSAAQDSEAGDGTTSVVILTGALLGAAERLLNKGIHPTIIADSFQSAAKR 130
Query: 132 ARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAVMRLKG---- 187
+ D LL+ + + + + L++ A T+LSSKI+SQ LAVD+V+++
Sbjct: 131 SVDILLEMC---HKVSLSDREQLVRAASTSLSSKIVSQYSSFLAPLAVDSVLKISDENSK 187
Query: 188 STNLESIQIIKKPGGSLKDSFLDEGFILDKKI--GIGQPKRIENAKI------------- 232
+ +L I+++KK GG++ D+ + +G +L + G P R E AKI
Sbjct: 188 NVDLNDIRLVKKVGGTIDDTEMIDGVVLTQTAIKSAGGPTRKEKAKIGLIQFQISPPKPD 247
Query: 233 ----LVANTAMDTDKV----KIYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINC 284
++ N DK+ + Y + + +K +R+ V + H
Sbjct: 248 TENNIIVNDYRQMDKILKEERAYLLNICKKIKKAKCNVLLIQKSILRDAVNDLALH---- 303
Query: 285 FVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGHCKLI 344
+ I+ ++ + + IE L+ G + + + +L L+
Sbjct: 304 -------------FLSKLNIMVVKDIEREEIEFLSKGLGCKPIADIELFTEDRLDSADLV 350
Query: 345 EEIMIGEDKLIHFSGVEMGQA---CTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRV 401
EEI K++ +G+ A ++V+RGA++ ++DE ERSLHDALCV+ V + +
Sbjct: 351 EEIDSDGSKIVRVTGIRNNNARPTVSVVIRGANNMIIDETERSLHDALCVIRCLVKERGL 410
Query: 402 LFGGGWPEMVMAKEVDELARKTPGKKSHAIEAFSRALVAIPTTIADNAGLDSAELIAQLR 461
+ GGG PE+ +++ + + AR G ++ + F+ AL IPTT+A+NAGL+S +++ +LR
Sbjct: 411 IAGGGAPEIEISRRLSKEARSMEGVQAFIWQEFASALEVIPTTLAENAGLNSIKVVTELR 470
Query: 462 AEHQKEGCPAGIDVISGSVGDMAELGISESFKVKQAVLLSATEAAEMILRVDEI 515
++H+ GI V + E I + V + + A+E + ILR+D+I
Sbjct: 471 SKHENGELNDGISVRRSGTTNTYEEHILQPVLVSTSAITLASECVKSILRIDDI 524
>pdb|3IYG|G Chain G, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 515
Score = 228 bits (581), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 156/515 (30%), Positives = 271/515 (52%), Gaps = 18/515 (3%)
Query: 14 EKGERARMASFVGAMAIADLVKTTLGPKGMDKILQSTGRGREVTVTNDGATILKSLHIDN 73
E G + + + A IAD+++T LGPK M K+L G + +TNDG IL+ + + +
Sbjct: 5 ESGRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGG--IVMTNDGNAILREIQVQH 62
Query: 74 PAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECAR 133
PAAK +++IS+ QD+EVGDGTTSV++LAGE+L AE + ++HP +IS +R A
Sbjct: 63 PAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYRKAL---- 118
Query: 134 DALLQKVVDNKENAETFKSDLM-KIAMTTLSSKILSQDKEHFGQLAVDAVMRLKGSTNLE 192
D ++ + +T D M I +++++K++S+ +A+DAV ++ N
Sbjct: 119 DDMISTLKKISIPVDTSNRDTMLNIINSSITTKVISRWSSLACNIALDAVKTVQFEENGR 178
Query: 193 SIQIIKK-------PGGSLKDSFLDEGFILDKKIGIGQPKR-IENAKILVANTAMDTDKV 244
IKK PGG ++DS + G +++K + + +R I+N +I++ +++++ K
Sbjct: 179 KEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKG 238
Query: 245 KIYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGI 304
+ + + I E++ +++ + II + + + I + + A I
Sbjct: 239 E-SQTDIEITREEDFTRILQMEEEYIQQLCEDIIQLKPDVVITEKGISDLAQHYLMRANI 297
Query: 305 LAIEHADFDGIERLALVTGGEIASTFDNPESVKLGH-CKLIEEIMIGEDKLIHFSGVEMG 363
AI R+A G I S + +G L+E IG++ + +
Sbjct: 298 TAIRRVRKTDNNRIARACGARIVSRPEELREEDVGTGAGLLEIKKIGDEYFTFITECKDP 357
Query: 364 QACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELARKT 423
+ACTI+LRGAS +L E ER+L DA+ V + D +++ GGG EM +A + E ++
Sbjct: 358 KACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAHALTEKSKAM 417
Query: 424 PGKKSHAIEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKEGCPA-GIDVISGSVGD 482
G + A ++AL IP T+ N G + L+ LRA+H +E C G++ +G++ D
Sbjct: 418 TGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCETWGVNGETGTLVD 477
Query: 483 MAELGISESFKVKQAVLLSATEAAEMILRVDEIIT 517
M ELGI E VK +A E A ++LR+D+I++
Sbjct: 478 MKELGIWEPLAVKLQTYKTAVETAVLLLRIDDIVS 512
>pdb|3IYG|Z Chain Z, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 517
Score = 212 bits (539), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 155/520 (29%), Positives = 275/520 (52%), Gaps = 30/520 (5%)
Query: 15 KGERARMASFVGAMAIADLVKTTLGPKGMDKILQSTGRGREVTVTNDGATILKSLHIDNP 74
+ + A + A + D+++T LGPKG K+L S G G ++ +T DG +L + I +P
Sbjct: 7 RAQAALAVNISAARGLQDVLRTNLGPKGTMKMLVS-GAG-DIKLTKDGNVLLHEMQIQHP 64
Query: 75 AAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARD 134
A ++ ++ QDD GDGTTS V++ GELL++A+ ++ +HP I GF A E A
Sbjct: 65 TASLIAKVATAQDDITGDGTTSNVLIIGELLKQADLYISEGLHPRIITEGFEAAKEKALQ 124
Query: 135 ALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAVMRLKGS---TNL 191
L Q V + + ET L+ +A T+L +K+ ++ + + VD+++ +K +L
Sbjct: 125 FLEQVKVSKEMDRET----LIDVARTSLRTKVHAELADVLTEAVVDSILAIKKQDEPIDL 180
Query: 192 ESIQIIKKPGGSLKDSFLDEGFILDKKIGIGQP---KRIENAKILVANTAMDTDKVKIYG 248
++I++ S D+ L G +LD G P KR+E+A IL N +++ +K ++
Sbjct: 181 FMVEIMEMKHKSETDTSLIRGLVLDH--GARHPDMKKRVEDAYILTCNVSLEYEKTEV-N 237
Query: 249 ARVRVDSMSKAAEIEGAEKQKMREKVQKIIA----------HGINCFVNRQLIYNFPEEL 298
+ S + ++ AE++ + ++V+KII G +N++ I F +
Sbjct: 238 SGFFYKSAEEREKLVKAERKFIEDRVKKIIELKKKVCGDSDKGF-VVINQKGIDPFSLDA 296
Query: 299 FADAGILAIEHADFDGIERLALVTGGEIASTFD--NPESVKLGHCKLIEEIMIGEDKLIH 356
A GI+A+ A +ERL L GG ++ D NP+ + LGH + E +GE+K
Sbjct: 297 LAKEGIIALRRAKRRNMERLTLACGGIALNSLDDLNPDCL-LGHAG-VYEYTLGEEKFTF 354
Query: 357 FSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEV 416
++ T++++G + H L + + ++ D L + ++D V+ G G E+ MA+ +
Sbjct: 355 IEKCNNPRSVTLLIKGPNKHTLTQIKDAIRDGLRAVKNAIDDGCVVPGAGAVEVAMAEAL 414
Query: 417 DELARKTPGKKSHAIEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKEGCPAGIDVI 476
+ G+ ++AF+ AL+ IP +A N+G D E + +++AEH + G G+D+
Sbjct: 415 VKYKPSVKGRAQLGVQAFADALLIIPKVLAQNSGFDLQETLVKVQAEHSESGQLVGVDLN 474
Query: 477 SGSVGDMAELGISESFKVKQAVLLSATEAAEMILRVDEII 516
+G AE GI +++ VK+ +L S T A IL VDEI+
Sbjct: 475 TGEPMVAAEAGIWDNYCVKKQLLHSCTVIATNILLVDEIM 514
>pdb|3P9D|F Chain F, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|N Chain N, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|FF Chain f, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|NN Chain n, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|F Chain F, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|N Chain N, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|FF Chain f, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|NN Chain n, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 546
Score = 189 bits (480), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 144/540 (26%), Positives = 277/540 (51%), Gaps = 37/540 (6%)
Query: 5 RIFRDEANEEKGERARMASFVGAMAIADLVKTTLGPKGMDKILQSTGRGREVTVTNDGAT 64
++ +A + + A + A + +++T LGPKG K+L G G + +T DG
Sbjct: 4 QLLNPKAESLRRDAALKVNVTSAEGLQSVLETNLGPKGTLKMLVD-GAG-NIKLTKDGKV 61
Query: 65 ILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISG 124
+L + I +P A ++ + QD+ GDGTT+VV L GELLR+A + + +HP I G
Sbjct: 62 LLTEMQIQSPTAVLIARAAAAQDEITGDGTTTVVCLVGELLRQAHRFIQEGVHPRIITDG 121
Query: 125 FRMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAVMR 184
F +A + + L + +K N + L+++A ++L +K+ + E + DAV+
Sbjct: 122 FEIARKESM-KFLDEFKISKTNLSNDREFLLQVARSSLLTKVDADLTEVLTPIVTDAVLS 180
Query: 185 LKGST----NLESIQIIKKPGGSLKDSFLDEGFILDKKIGIGQ----PKRIENAKILVAN 236
+ + +L ++I++ S KD+ +G +LD G+ P R++NA +L+ N
Sbjct: 181 VYDAQADNLDLHMVEIMQMQHLSPKDTTFIKGLVLDHG---GRHPDMPTRVKNAYVLILN 237
Query: 237 TAMDTDKVKIYGARVRVDSMSKAAEIEGAEKQKMREKVQKII-----AHGIN-----CFV 286
+++ +K ++ + S + ++ +E++ + K++KII G++ +
Sbjct: 238 VSLEYEKTEV-NSGFFYSSADQRDKLAASERKFVDAKLKKIIDLKNEVCGMDPDKGFVII 296
Query: 287 NRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEE 346
N++ I ++FA ILA+ A +ERL LVTGGE ++ ++ LG L+ +
Sbjct: 297 NQKGIDPMSLDVFAKHNILALRRAKRRNMERLQLVTGGEAQNSVEDLSPQILGFSGLVYQ 356
Query: 347 IMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGG 406
IGE+K + + ++CTI+++G++H+ L + + ++ D L ++ + D ++ G G
Sbjct: 357 ETIGEEKFTYVTENTDPKSCTILIKGSTHYALAQTKDAVRDGLRAVANVLKDKNIIPGAG 416
Query: 407 WPEMVMAK-----EVDELARKTPGKKSHAIEAFSRALVAIPTTIADNAGLDSAELIAQLR 461
+ +++ +++L K GK IEAF+ AL+ IP T+ N+G D +++A +
Sbjct: 417 AFYIALSRYLRSANMNKLGAK--GKTKTGIEAFAEALLVIPKTLVKNSGFDPLDVLAMVE 474
Query: 462 -----AEHQKEGCPAGIDVISGSVGDMAELGISESFKVKQAVLLSATEAAEMILRVDEII 516
A+ E G+D+ G D GI +S++V + + AT A +L DE++
Sbjct: 475 DELDDAQDSDETRYVGVDLNIGDSCDPTIEGIWDSYRVLRNAITGATGIASNLLLCDELL 534
>pdb|3IYG|Q Chain Q, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 512
Score = 168 bits (425), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 140/493 (28%), Positives = 247/493 (50%), Gaps = 12/493 (2%)
Query: 30 IADLVKTTLGPKGMDKILQSTGRGREVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDE 89
+A +T GP GM+K++ ++ VTND ATIL+ L + +PAAK++V S +Q+ E
Sbjct: 23 LAQTTRTAYGPNGMNKMV--INHLEKLFVTNDAATILRELEVQHPAAKMIVMASHMQEQE 80
Query: 90 VGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAET 149
VGDGT V+V AG LL AE+L+ + +I G+ +A + A + L V + +N
Sbjct: 81 VGDGTNFVLVFAGALLELAEELLRLGLSVSEVIEGYEIACKKAHEILPDLVCCSAKNLRD 140
Query: 150 FKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAVMRL---KGSTNLESIQIIKKPGGSLKD 206
++ + T++ SK ++ +L A + + G N+++I++ K G +
Sbjct: 141 V-DEVSSLLHTSVMSKQYG-NEVFLAKLIAQACVSIFPDSGHFNVDNIRVCKILGSGVHS 198
Query: 207 SFLDEGFILDKKIGIGQPKRIENAKILVANTAMDTDKVKIYGARVRVDSMSKAAEIEGAE 266
S + G + K+ G +++AKI V + D + G V + S + E
Sbjct: 199 SSVLHGMVFKKETE-GDVTSVKDAKIAVYSCPFDGMITETKGT-VLIKSAEELMNFSKGE 256
Query: 267 KQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEI 326
+ M +V+ I G N V + + I+ + + RL G
Sbjct: 257 ENLMDAQVKAIADTGANVVVTGGRVADMALHYANKYNIMLVRLNSKWDLRRLCKTVGATA 316
Query: 327 ASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSG-VEMGQACTIVLRGASHHVLDEAERSL 385
+ P ++GHC + +G+ +++ F E G TIVLRG++ +++D+ ER++
Sbjct: 317 LPRLNPPVLEEMGHCDSVYLSEVGDTQVVVFKHEKEDGAISTIVLRGSTDNLMDDIERAV 376
Query: 386 HDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELARKTPGKKSHAIEAFSRALVAIPTTI 445
D + D R++ GGG E+ +AK++ PG + +AI+ F+ A AIP +
Sbjct: 377 DDGVNTFKVLTRDKRLVPGGGATEIELAKQITSYGETCPGLEQYAIKKFAEAFEAIPRAL 436
Query: 446 ADNAGLDSAELIAQLRAEHQKEGCPAGIDVIS--GSVGDMAELGISESFKVKQAVLLSAT 503
A+N+G+ + E+I++L A HQ+ G+D+ + +V DM E G+ +++ K + AT
Sbjct: 437 AENSGVKANEVISKLYAVHQEGNKNVGLDIEAEVPAVKDMLEAGVLDTYLGKYWAIKLAT 496
Query: 504 EAAEMILRVDEII 516
AA +LRVD+II
Sbjct: 497 NAAVTVLRVDQII 509
>pdb|3P9D|H Chain H, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|P Chain P, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|HH Chain h, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|PP Chain p, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|H Chain H, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|P Chain P, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|HH Chain h, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|PP Chain p, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 568
Score = 162 bits (410), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 141/509 (27%), Positives = 252/509 (49%), Gaps = 35/509 (6%)
Query: 36 TTLGPKGMDKIL-QSTGRGREVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDEVGDGT 94
T++GP G +KI+ G+ + +TND AT+L+ L I +PA KVLV ++ Q ++GDGT
Sbjct: 44 TSMGPCGRNKIIVNHLGK---IIITNDAATMLRELDIVHPAVKVLVMATEQQKIDMGDGT 100
Query: 95 TSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAETFKSDL 154
V++LAGELL +EKL++ + + II G+ MA + L + VV + K++L
Sbjct: 101 NLVMILAGELLNVSEKLISMGLSAVEIIQGYNMARKFTLKELDEMVVGEITDKND-KNEL 159
Query: 155 MKIAMTTLSSKILSQDKEHFGQLAVDAVMRLKGST---------NLESIQIIKKPGGSLK 205
+K+ +SSK + + +L +AV + N++SI+++K GGSL
Sbjct: 160 LKMIKPVISSKKYGSE-DILSELVSEAVSHVLPVAQQAGEIPYFNVDSIRVVKIMGGSLS 218
Query: 206 DSFLDEGFILDKKIGIGQPKRI---ENAKILVANTAMDTDKVKIYGARVRVDSMSKAAEI 262
+S + +G + +++ G K + + K+ V +D + G V + + + +
Sbjct: 219 NSTVIKGMVFNREPE-GHVKSLSEDKKHKVAVFTCPLDIANTETKGT-VLLHNAQEMLDF 276
Query: 263 EGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVT 322
E++++ +++I G+ C V + GIL ++ + RL V
Sbjct: 277 SKGEEKQIDAMMKEIADMGVECIVAGAGVGELALHYLNRYGILVLKVPSKFELRRLCRVC 336
Query: 323 GGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGV--EMGQACTIVLRGASHHVLDE 380
G P +LG + ++ + IG D++ F E+ + TI+LRGA+ + LD+
Sbjct: 337 GATPLPRLGAPTPEELGLVETVKTMEIGGDRVTVFKQEQGEISRTSTIILRGATQNNLDD 396
Query: 381 AERSLHDALCVLSQTVNDS--RVLFGGGWPEMVMAKEVDELARKTPGKKSHAIEAFSRAL 438
ER++ D + + + S ++L G G E+ + + + +TPG AI+ F+ A
Sbjct: 397 IERAIDDGVAAVKGLMKPSGGKLLPGAGATEIELISRITKYGERTPGLLQLAIKQFAVAF 456
Query: 439 VAIPTTIADNAGLDSAELIAQLRAEH--------QKEGCPAGIDVISGS---VGDMAELG 487
+P T+A+ AGLD E++ L A H + + G+D+ S V D+ E
Sbjct: 457 EVVPRTLAETAGLDVNEVLPNLYAAHNVTEPGAVKTDHLYKGVDIDGESDEGVKDIREEN 516
Query: 488 ISESFKVKQAVLLSATEAAEMILRVDEII 516
I + K+ + ATEAA +L +D+II
Sbjct: 517 IYDMLATKKFAINVATEAATTVLSIDQII 545
>pdb|3P9D|C Chain C, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|K Chain K, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|CC Chain c, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|KK Chain k, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|C Chain C, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|K Chain K, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|CC Chain c, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|KK Chain k, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 590
Score = 128 bits (322), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 102/374 (27%), Positives = 194/374 (51%), Gaps = 34/374 (9%)
Query: 6 IFRDEANEEK-GERARMASFVGAMAIADLVKTTLGPKGMDKILQSTGRGREVTVTNDGAT 64
+F + + E G +A++++ A A+AD+++T LGPK M K+L G + +TNDG
Sbjct: 6 VFMNASQERTTGRQAQISNITAAKAVADVIRTCLGPKAMLKMLLDPMGG--LVLTNDGHA 63
Query: 65 ILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLRE-AEKLVAAKIHPMTIIS 123
IL+ + + +PAAK ++++S+ QD+EVGDGTT+V++LAGE+L + A L+ IHP+ II
Sbjct: 64 ILREIDVAHPAAKSMLELSRTQDEEVGDGTTTVIILAGEILAQCAPYLIEKNIHPVIIIQ 123
Query: 124 GFRMAAECARDALLQ--KVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDA 181
+ A A + + Q K VD + +A + K+ ++ +K + E +LA+DA
Sbjct: 124 ALKKALTDALEVIKQVSKPVDVENDAA-----MKKLIQASIGTKYVIHWSEKMCELALDA 178
Query: 182 VMRLK--------GSTNLE-----SIQIIKKPGGSLKDSFLDEGFILDKKIGIGQPK--- 225
V ++ G N E +++ K PGG + DS + +G +L+K + PK
Sbjct: 179 VKTVRKDLGQTVEGEPNFEIDIKRYVRVEKIPGGDVLDSRVLKGVLLNKD--VVHPKMSR 236
Query: 226 RIENAKILVANTAMDTDKVKIYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCF 285
IEN ++++ + ++ K + + ++ I E+++++ ++I+A
Sbjct: 237 HIENPRVVLLDCPLEYKKGE-SQTNIEIEKEEDWNRILQIEEEQVQLMCEQILAVRPTLV 295
Query: 286 VNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLG-HCKLI 344
+ + + + + G + R+A VTG I + ++ + +G +C L
Sbjct: 296 ITEKGVSDLAQHYLLKGGCSVLRRVKKSDNNRIARVTGATIVNRVEDLKESDVGTNCGLF 355
Query: 345 EEIMIGEDKLIHFS 358
+ MIG++ +FS
Sbjct: 356 KVEMIGDE---YFS 366
Score = 102 bits (255), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 57/154 (37%), Positives = 91/154 (59%)
Query: 364 QACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELARKT 423
+ACTI+LRG S +L+E +R+L DA+ V + + GGG EM ++ ++ E A++
Sbjct: 431 KACTIMLRGGSKDILNEIDRNLQDAMAVARNVMLSPSLSPGGGATEMAVSVKLAEKAKQL 490
Query: 424 PGKKSHAIEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKEGCPAGIDVISGSVGDM 483
G + +A + A+ IP T+ NAG D L++QLRA+H + GID G + DM
Sbjct: 491 EGIQQWPYQAVADAMECIPRTLIQNAGGDPIRLLSQLRAKHAQGNFTTGIDGDKGKIVDM 550
Query: 484 AELGISESFKVKQAVLLSATEAAEMILRVDEIIT 517
GI E +KQ + +A E+A ++LRVD+I++
Sbjct: 551 VSYGIWEPEVIKQQSVKTAIESACLLLRVDDIVS 584
>pdb|3RTK|A Chain A, Crystal Structure Of Cpn60.2 From Mycobacterium
Tuberculosis At 2.8a
pdb|3RTK|B Chain B, Crystal Structure Of Cpn60.2 From Mycobacterium
Tuberculosis At 2.8a
Length = 546
Score = 88.2 bits (217), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 135/568 (23%), Positives = 237/568 (41%), Gaps = 114/568 (20%)
Query: 17 ERARMASFVGAMAIADLVKTTLGPKGMDKILQSTGRGREVTVTNDGATILKSLHIDNP-- 74
E AR G A+AD VK TLGPKG + +L+ + T+TNDG +I K + +++P
Sbjct: 9 EEARRGLERGLNALADAVKVTLGPKGRNVVLEK--KWGAPTITNDGVSIAKEIELEDPYE 66
Query: 75 --AAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECA 132
A+++ +++K DD GDGTT+ VLA L+RE + VAA +P+ + G A E
Sbjct: 67 KIGAELVKEVAKKTDDVAGDGTTTATVLAQALVREGLRNVAAGANPLGLKRGIEKAVEKV 126
Query: 133 RDALLQ--KVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAVMRLKG--- 187
+ LL+ K V+ KE +IA T +S + G L +A+ ++
Sbjct: 127 TETLLKGAKEVETKE----------QIAATA----AISAGDQSIGDLIAEAMDKVGNEGV 172
Query: 188 ----STNLESIQIIKKPGGSLKDSFLDEGFILDKKIGIGQPKR----IENAKILVANTAM 239
+N +Q+ G ++ F+ D P+R +E+ IL+ ++ +
Sbjct: 173 ITVEESNTFGLQLELTEGMRFDKGYISGYFVTD-------PERQEAVLEDPYILLVSSKV 225
Query: 240 DTDKVKIYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELF 299
T K D + ++ GA K + IIA + L+ N F
Sbjct: 226 STVK----------DLLPLLEKVIGAGKPLL------IIAEDVEGEALSTLVVNKIRGTF 269
Query: 300 ADAGILAIEHADFDG--IERLALVTGGEIAS-----TFDNPESVKLGHCKLIEEIMIGED 352
+ A D ++ +A++TGG++ S T +N + LG + ++++ +D
Sbjct: 270 KSVAVKAPGFGDRRKAMLQDMAILTGGQVISEEVGLTLENADLSLLGKAR---KVVVTKD 326
Query: 353 KLIHFSG----------------------------------VEMGQACTIVLRGASHHV- 377
+ G ++ ++ GA+ V
Sbjct: 327 ETTIVEGAGDTDAIAGRVAQIRQEIENSDSDYDREKLQERLAKLAGGVAVIKAGAATEVE 386
Query: 378 LDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELARKTPGKKSHAIEAFSRA 437
L E + + DA+ V + ++ GGG + A +DEL K G ++ A
Sbjct: 387 LKERKHRIEDAVRNAKAAVEEG-IVAGGGVTLLQAAPTLDEL--KLEGDEATGANIVKVA 443
Query: 438 LVAIPTTIADNAGLDS---AELIAQLRAEHQKEGCPAGIDVISGSVGDMAELGISESFKV 494
L A IA N+GL+ AE + L A H G++ +G D+ G+++ KV
Sbjct: 444 LEAPLKQIAFNSGLEPGVVAEKVRNLPAGH-------GLNAQTGVYEDLLAAGVADPVKV 496
Query: 495 KQAVLLSATEAAEMILRVDEIITCAPRR 522
++ L +A A + L + ++ P +
Sbjct: 497 TRSALQNAASIAGLFLTTEAVVADKPEK 524
>pdb|1WE3|A Chain A, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|B Chain B, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|C Chain C, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|D Chain D, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|E Chain E, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|F Chain F, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|G Chain G, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|H Chain H, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|I Chain I, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|J Chain J, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|K Chain K, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|L Chain L, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|M Chain M, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|N Chain N, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|AA Chain a, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|BB Chain b, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|CC Chain c, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|DD Chain d, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|EE Chain e, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|FF Chain f, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|GG Chain g, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|HH Chain h, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|II Chain i, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|JJ Chain j, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|KK Chain k, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|LL Chain l, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|MM Chain m, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|NN Chain n, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
Length = 543
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 69/120 (57%), Gaps = 6/120 (5%)
Query: 17 ERARMASFVGAMAIADLVKTTLGPKGMDKILQSTGRGREVTVTNDGATILKSL----HID 72
E AR A G A+A+ VK TLGP+G + +L+ + T+T DG T+ K + H++
Sbjct: 9 EAARRALERGVNAVANAVKVTLGPRGRNVVLEK--KFGSPTITKDGVTVAKEVELEDHLE 66
Query: 73 NPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECA 132
N A++L +++ +D GDGTT+ VLA ++RE K VAA +P+ + G A E A
Sbjct: 67 NIGAQLLKEVASKTNDVAGDGTTTATVLAQAIVREGLKNVAAGANPLALKRGIEKAVEAA 126
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 74/162 (45%), Gaps = 3/162 (1%)
Query: 363 GQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELARK 422
G I + A+ L E + DAL V + ++ GGG + V+EL +K
Sbjct: 372 GGVAVIRVGAATETELKEKKHRFEDALNATRAAVEEG-IVPGGGVTLLRAISAVEELIKK 430
Query: 423 TPGKKSHAIEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKEGCPAGIDVISGSVGD 482
G ++ + RAL IA+NAG + + ++ Q+ AE + G + +G D
Sbjct: 431 LEGDEATGAKIVRRALEEPARQIAENAGYEGSVIVQQILAETKNPRY--GFNAATGEFVD 488
Query: 483 MAELGISESFKVKQAVLLSATEAAEMILRVDEIITCAPRRRE 524
M E GI + KV ++ L +A +IL + ++ P ++E
Sbjct: 489 MVEAGIVDPAKVTRSALQNAASIGALILTTEAVVAEKPEKKE 530
>pdb|1SJP|A Chain A, Mycobacterium Tuberculosis Chaperonin60.2
pdb|1SJP|B Chain B, Mycobacterium Tuberculosis Chaperonin60.2
Length = 504
Score = 68.9 bits (167), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 119/528 (22%), Positives = 216/528 (40%), Gaps = 112/528 (21%)
Query: 57 TVTNDGATILKSLHIDNP----AAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLV 112
T+TNDG +I K + +++P A+++ +++K DD GDGTT+ VLA L+RE + V
Sbjct: 5 TITNDGVSIAKEIELEDPYEKIGAELVKEVAKKTDDVAGDGTTTATVLAQALVREGLRNV 64
Query: 113 AAKIHPMTIISGFRMAAECARDALLQ--KVVDNKENAETFKSDLMKIAMTTLSSKILSQD 170
AA +P+ + G A E + LL+ K V+ KE +IA T +S
Sbjct: 65 AAGANPLGLKRGIEKAVEKVTETLLKGAKEVETKE----------QIAATA----AISAG 110
Query: 171 KEHFGQLAVDAVMRLKG-------STNLESIQIIKKPGGSLKDSFLDEGFILDKKIGIGQ 223
+ G L +A+ ++ +N +Q+ G ++ F+ D
Sbjct: 111 DQSIGDLIAEAMDKVGNEGVITVEESNTFGLQLELTEGMRFDKGYISGYFVTD------- 163
Query: 224 PKR----IENAKILVANTAMDTDKVKIYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIA 279
P+R +E+ IL+ ++ + T K D + ++ GA K + IIA
Sbjct: 164 PERQEAVLEDPYILLVSSKVSTVK----------DLLPLLEKVIGAGKPLL------IIA 207
Query: 280 HGINCFVNRQLIYNFPEELFADAGILAIEHADFDG--IERLALVTGGEIAS-----TFDN 332
+ L+ N F + A D ++ +A++TGG++ S T +N
Sbjct: 208 EDVEGEALSTLVVNKIRGTFKSVAVKAPGFGDRRKAMLQDMAILTGGQVISEEVGLTLEN 267
Query: 333 PESVKLGHCKLIEEIMIGEDKLIHFSG--------------------------------- 359
+ LG + ++++ +D+ G
Sbjct: 268 ADLSLLGKAR---KVVVTKDETTIVEGAGDTDAIAGRVAQIRQEIENSDSDYDREKLQER 324
Query: 360 -VEMGQACTIVLRGASHHV-LDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVD 417
++ ++ GA+ V L E + + DA+ V + ++ GGG + A +D
Sbjct: 325 LAKLAGGVAVIKAGAATEVELKERKHRIEDAVRNAKAAVEEG-IVAGGGVTLLQAAPTLD 383
Query: 418 ELARKTPGKKSHAIEAFSRALVAIPTTIADNAGLDS---AELIAQLRAEHQKEGCPAGID 474
EL K G ++ AL A IA N+GL+ AE + L A H G++
Sbjct: 384 EL--KLEGDEATGANIVKVALEAPLKQIAFNSGLEPGVVAEKVRNLPAGH-------GLN 434
Query: 475 VISGSVGDMAELGISESFKVKQAVLLSATEAAEMILRVDEIITCAPRR 522
+G D+ G+++ KV ++ L +A A + L + ++ P +
Sbjct: 435 AQTGVYEDLLAAGVADPVKVTRSALQNAASIAGLFLTTEAVVADKPEK 482
>pdb|1E0R|B Chain B, Beta-Apical Domain Of Thermosome
Length = 159
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 77/149 (51%), Gaps = 2/149 (1%)
Query: 212 GFILDK-KIGIGQPKRIENAKILVANTAMDTDKVKIYGARVRVDSMSKAAEIEGAEKQKM 270
G I+DK K+ G P +++AKI + + ++ K + + +R++ S + E+ +
Sbjct: 3 GIIVDKEKVHPGMPDVVKDAKIALLDAPLEIKKPE-FDTNLRIEDPSMIQKFLAQEENML 61
Query: 271 REKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIASTF 330
RE V KI + G N + ++ I + + + AGI A+ +++LA TG I ST
Sbjct: 62 REMVDKIKSVGANVVITQKGIDDMAQHYLSRAGIYAVRRVKKSDMDKLAKATGASIVSTI 121
Query: 331 DNPESVKLGHCKLIEEIMIGEDKLIHFSG 359
D S LG + +E++ +GED + +G
Sbjct: 122 DEISSSDLGTAERVEQVKVGEDYMTFVTG 150
>pdb|1IOK|A Chain A, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|B Chain B, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|C Chain C, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|D Chain D, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|E Chain E, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|F Chain F, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|G Chain G, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
Length = 545
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 66/224 (29%), Positives = 111/224 (49%), Gaps = 29/224 (12%)
Query: 18 RARMASFVGAMAIADLVKTTLGPKGMDKIL-QSTGRGREVTVTNDGATILKSLHI----D 72
R RM G +AD VK TLGPKG + ++ +S G R +T DG ++ K + + +
Sbjct: 13 RDRM--LKGVNILADAVKVTLGPKGRNVVIDKSFGAPR---ITKDGVSVAKEIELSDKFE 67
Query: 73 NPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECA 132
N A+++ +++ +DE GDGTT+ VLA ++RE K VAA ++PM + G
Sbjct: 68 NMGAQMVREVASRTNDEAGDGTTTATVLAQAIVREGLKAVAAGMNPMDLKRGI------- 120
Query: 133 RDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHF-GQLAVDAVMRLKGSTNL 191
D KVV+ ++A +D ++A +S + E F GQ +A+ R+
Sbjct: 121 -DVATAKVVEAIKSAARPVNDSSEVAQVG----TISANGESFIGQQIAEAMQRVGN---- 171
Query: 192 ESIQIIKKPGGSLKDSFLDEGFILDKKIGIGQPKRIENAKILVA 235
E + +++ G + + EG D+ G P + NA ++A
Sbjct: 172 EGVITVEENKGMETEVEVVEGMQFDR--GYLSPYFVTNADKMIA 213
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 66/158 (41%), Gaps = 5/158 (3%)
Query: 363 GQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELARK 422
G I + G + + E + + DAL V + V+ GG +V +V E
Sbjct: 374 GGVAVIRVGGMTEIEVKERKDRVDDALNATRAAVQEGIVV--GGGVALVQGAKVLEGLSG 431
Query: 423 TPGKKSHAIEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKEGCPAGIDVISGSVGD 482
+ I RAL A IA+NAG+D A + ++R K G + + GD
Sbjct: 432 ANSDQDAGIAIIRRALEAPMRQIAENAGVDGAVVAGKVRESSDK---AFGFNAQTEEYGD 488
Query: 483 MAELGISESFKVKQAVLLSATEAAEMILRVDEIITCAP 520
M + G+ + KV + L A A +++ + +I P
Sbjct: 489 MFKFGVIDPAKVVRTALEDAASVAGLLITTEAMIAEKP 526
>pdb|3C9V|A Chain A, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|B Chain B, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|C Chain C, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|D Chain D, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|E Chain E, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|F Chain F, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|G Chain G, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|H Chain H, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|I Chain I, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|J Chain J, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|K Chain K, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|L Chain L, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|M Chain M, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|N Chain N, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
Length = 526
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 69/126 (54%), Gaps = 8/126 (6%)
Query: 16 GERARMASFVGAMAIADLVKTTLGPKGMDKIL-QSTGRGREVTVTNDGATILKSLHID-- 72
G AR+ G +AD VK TLGPKG + +L +S G T+T DG ++ + + ++
Sbjct: 8 GNDARVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFG---APTITKDGVSVAREIELEDK 64
Query: 73 --NPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAE 130
N A+++ +++ +D GDGTT+ VLA ++ E K VAA ++PM + G A
Sbjct: 65 FENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVT 124
Query: 131 CARDAL 136
A + L
Sbjct: 125 AAVEEL 130
>pdb|1PCQ|A Chain A, Crystal Structure Of Groel-Groes
pdb|1PCQ|B Chain B, Crystal Structure Of Groel-Groes
pdb|1PCQ|C Chain C, Crystal Structure Of Groel-Groes
pdb|1PCQ|D Chain D, Crystal Structure Of Groel-Groes
pdb|1PCQ|E Chain E, Crystal Structure Of Groel-Groes
pdb|1PCQ|F Chain F, Crystal Structure Of Groel-Groes
pdb|1PCQ|G Chain G, Crystal Structure Of Groel-Groes
pdb|1PCQ|H Chain H, Crystal Structure Of Groel-Groes
pdb|1PCQ|I Chain I, Crystal Structure Of Groel-Groes
pdb|1PCQ|J Chain J, Crystal Structure Of Groel-Groes
pdb|1PCQ|K Chain K, Crystal Structure Of Groel-Groes
pdb|1PCQ|L Chain L, Crystal Structure Of Groel-Groes
pdb|1PCQ|M Chain M, Crystal Structure Of Groel-Groes
pdb|1PCQ|N Chain N, Crystal Structure Of Groel-Groes
pdb|1PF9|A Chain A, Groel-Groes-Adp
pdb|1PF9|B Chain B, Groel-Groes-Adp
pdb|1PF9|C Chain C, Groel-Groes-Adp
pdb|1PF9|D Chain D, Groel-Groes-Adp
pdb|1PF9|E Chain E, Groel-Groes-Adp
pdb|1PF9|F Chain F, Groel-Groes-Adp
pdb|1PF9|G Chain G, Groel-Groes-Adp
pdb|1PF9|H Chain H, Groel-Groes-Adp
pdb|1PF9|I Chain I, Groel-Groes-Adp
pdb|1PF9|J Chain J, Groel-Groes-Adp
pdb|1PF9|K Chain K, Groel-Groes-Adp
pdb|1PF9|L Chain L, Groel-Groes-Adp
pdb|1PF9|M Chain M, Groel-Groes-Adp
pdb|1PF9|N Chain N, Groel-Groes-Adp
pdb|1SVT|A Chain A, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|B Chain B, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|C Chain C, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|D Chain D, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|E Chain E, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|F Chain F, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|G Chain G, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|H Chain H, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|I Chain I, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|J Chain J, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|K Chain K, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|L Chain L, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|M Chain M, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|N Chain N, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SX4|A Chain A, Groel-Groes-Adp7
pdb|1SX4|B Chain B, Groel-Groes-Adp7
pdb|1SX4|C Chain C, Groel-Groes-Adp7
pdb|1SX4|D Chain D, Groel-Groes-Adp7
pdb|1SX4|E Chain E, Groel-Groes-Adp7
pdb|1SX4|F Chain F, Groel-Groes-Adp7
pdb|1SX4|G Chain G, Groel-Groes-Adp7
pdb|1SX4|H Chain H, Groel-Groes-Adp7
pdb|1SX4|I Chain I, Groel-Groes-Adp7
pdb|1SX4|J Chain J, Groel-Groes-Adp7
pdb|1SX4|K Chain K, Groel-Groes-Adp7
pdb|1SX4|L Chain L, Groel-Groes-Adp7
pdb|1SX4|M Chain M, Groel-Groes-Adp7
pdb|1SX4|N Chain N, Groel-Groes-Adp7
pdb|2YNJ|A Chain A, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|B Chain B, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|C Chain C, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|D Chain D, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|E Chain E, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|F Chain F, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|G Chain G, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|H Chain H, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|I Chain I, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|J Chain J, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|K Chain K, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|L Chain L, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|M Chain M, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|N Chain N, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
Length = 524
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 69/126 (54%), Gaps = 8/126 (6%)
Query: 16 GERARMASFVGAMAIADLVKTTLGPKGMDKIL-QSTGRGREVTVTNDGATILKSLHID-- 72
G AR+ G +AD VK TLGPKG + +L +S G T+T DG ++ + + ++
Sbjct: 8 GNDARVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFG---APTITKDGVSVAREIELEDK 64
Query: 73 --NPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAE 130
N A+++ +++ +D GDGTT+ VLA ++ E K VAA ++PM + G A
Sbjct: 65 FENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVT 124
Query: 131 CARDAL 136
A + L
Sbjct: 125 AAVEEL 130
>pdb|1AON|A Chain A, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|B Chain B, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|C Chain C, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|D Chain D, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|E Chain E, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|F Chain F, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|G Chain G, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|H Chain H, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|I Chain I, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|J Chain J, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|K Chain K, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|L Chain L, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|M Chain M, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|N Chain N, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1GRU|A Chain A, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|B Chain B, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|C Chain C, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|D Chain D, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|E Chain E, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|F Chain F, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|G Chain G, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|H Chain H, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|I Chain I, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|J Chain J, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|K Chain K, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|L Chain L, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|M Chain M, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|N Chain N, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1MNF|A Chain A, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|B Chain B, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|C Chain C, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|D Chain D, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|E Chain E, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|F Chain F, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|G Chain G, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|H Chain H, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|I Chain I, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|J Chain J, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|K Chain K, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|L Chain L, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|M Chain M, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|N Chain N, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1XCK|A Chain A, Crystal Structure Of Apo Groel
pdb|1XCK|B Chain B, Crystal Structure Of Apo Groel
pdb|1XCK|C Chain C, Crystal Structure Of Apo Groel
pdb|1XCK|D Chain D, Crystal Structure Of Apo Groel
pdb|1XCK|E Chain E, Crystal Structure Of Apo Groel
pdb|1XCK|F Chain F, Crystal Structure Of Apo Groel
pdb|1XCK|G Chain G, Crystal Structure Of Apo Groel
pdb|1XCK|H Chain H, Crystal Structure Of Apo Groel
pdb|1XCK|I Chain I, Crystal Structure Of Apo Groel
pdb|1XCK|J Chain J, Crystal Structure Of Apo Groel
pdb|1XCK|K Chain K, Crystal Structure Of Apo Groel
pdb|1XCK|L Chain L, Crystal Structure Of Apo Groel
pdb|1XCK|M Chain M, Crystal Structure Of Apo Groel
pdb|1XCK|N Chain N, Crystal Structure Of Apo Groel
pdb|2C7C|A Chain A, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|B Chain B, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|C Chain C, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|D Chain D, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|E Chain E, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|F Chain F, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|G Chain G, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|H Chain H, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|I Chain I, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|J Chain J, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|K Chain K, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|L Chain L, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|M Chain M, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|N Chain N, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7D|A Chain A, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|B Chain B, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|C Chain C, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|D Chain D, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|E Chain E, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|F Chain F, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|G Chain G, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|H Chain H, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|I Chain I, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|J Chain J, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|K Chain K, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|L Chain L, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|M Chain M, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|N Chain N, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2CGT|A Chain A, Groel-Adp-Gp31 Complex
pdb|2CGT|B Chain B, Groel-Adp-Gp31 Complex
pdb|2CGT|C Chain C, Groel-Adp-Gp31 Complex
pdb|2CGT|D Chain D, Groel-Adp-Gp31 Complex
pdb|2CGT|E Chain E, Groel-Adp-Gp31 Complex
pdb|2CGT|F Chain F, Groel-Adp-Gp31 Complex
pdb|2CGT|G Chain G, Groel-Adp-Gp31 Complex
pdb|2CGT|H Chain H, Groel-Adp-Gp31 Complex
pdb|2CGT|I Chain I, Groel-Adp-Gp31 Complex
pdb|2CGT|J Chain J, Groel-Adp-Gp31 Complex
pdb|2CGT|K Chain K, Groel-Adp-Gp31 Complex
pdb|2CGT|L Chain L, Groel-Adp-Gp31 Complex
pdb|2CGT|M Chain M, Groel-Adp-Gp31 Complex
pdb|2CGT|N Chain N, Groel-Adp-Gp31 Complex
pdb|2NWC|A Chain A, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|B Chain B, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|C Chain C, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|D Chain D, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|E Chain E, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|F Chain F, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|G Chain G, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|H Chain H, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|I Chain I, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|J Chain J, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|K Chain K, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|L Chain L, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|M Chain M, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|N Chain N, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|3E76|A Chain A, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|B Chain B, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|C Chain C, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|D Chain D, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|E Chain E, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|F Chain F, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|G Chain G, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|H Chain H, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|I Chain I, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|J Chain J, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|K Chain K, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|L Chain L, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|M Chain M, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|N Chain N, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
Length = 547
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 69/126 (54%), Gaps = 8/126 (6%)
Query: 16 GERARMASFVGAMAIADLVKTTLGPKGMDKIL-QSTGRGREVTVTNDGATILKSLHID-- 72
G AR+ G +AD VK TLGPKG + +L +S G T+T DG ++ + + ++
Sbjct: 8 GNDARVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFG---APTITKDGVSVAREIELEDK 64
Query: 73 --NPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAE 130
N A+++ +++ +D GDGTT+ VLA ++ E K VAA ++PM + G A
Sbjct: 65 FENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVT 124
Query: 131 CARDAL 136
A + L
Sbjct: 125 AAVEEL 130
>pdb|4AAQ|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
Length = 548
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 69/126 (54%), Gaps = 8/126 (6%)
Query: 16 GERARMASFVGAMAIADLVKTTLGPKGMDKIL-QSTGRGREVTVTNDGATILKSLHID-- 72
G AR+ G +AD VK TLGPKG + +L +S G T+T DG ++ + + ++
Sbjct: 9 GNDARVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFG---APTITKDGVSVAREIELEDK 65
Query: 73 --NPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAE 130
N A+++ +++ +D GDGTT+ VLA ++ E K VAA ++PM + G A
Sbjct: 66 FENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVT 125
Query: 131 CARDAL 136
A + L
Sbjct: 126 AAVEEL 131
>pdb|2YEY|A Chain A, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|B Chain B, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|C Chain C, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|D Chain D, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|E Chain E, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|F Chain F, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|G Chain G, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|H Chain H, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|I Chain I, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|J Chain J, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|K Chain K, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|L Chain L, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|M Chain M, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|N Chain N, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
Length = 524
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 69/126 (54%), Gaps = 8/126 (6%)
Query: 16 GERARMASFVGAMAIADLVKTTLGPKGMDKIL-QSTGRGREVTVTNDGATILKSLHID-- 72
G AR+ G +AD VK TLGPKG + +L +S G T+T DG ++ + + ++
Sbjct: 8 GNDARVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFG---APTITKDGVSVAREIELEDK 64
Query: 73 --NPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAE 130
N A+++ +++ +D GDGTT+ VLA ++ E K VAA ++PM + G A
Sbjct: 65 FENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVT 124
Query: 131 CARDAL 136
A + L
Sbjct: 125 AAVEEL 130
>pdb|1J4Z|A Chain A, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|B Chain B, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|C Chain C, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|D Chain D, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|E Chain E, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|F Chain F, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|G Chain G, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|H Chain H, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|I Chain I, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|J Chain J, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|K Chain K, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|L Chain L, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|M Chain M, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|N Chain N, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|O Chain O, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|P Chain P, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|Q Chain Q, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|R Chain R, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|S Chain S, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|T Chain T, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|U Chain U, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|V Chain V, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|W Chain W, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|X Chain X, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|Y Chain Y, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|Z Chain Z, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|1 Chain 1, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|2 Chain 2, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
Length = 547
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 69/126 (54%), Gaps = 8/126 (6%)
Query: 16 GERARMASFVGAMAIADLVKTTLGPKGMDKIL-QSTGRGREVTVTNDGATILKSLHID-- 72
G AR+ G +AD VK TLGPKG + +L +S G T+T DG ++ + + ++
Sbjct: 8 GNDARVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFG---APTITKDGVSVAREIELEDK 64
Query: 73 --NPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAE 130
N A+++ +++ +D GDGTT+ VLA ++ E K VAA ++PM + G A
Sbjct: 65 FENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVT 124
Query: 131 CARDAL 136
A + L
Sbjct: 125 AAVEEL 130
>pdb|2EU1|A Chain A, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|B Chain B, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|C Chain C, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|D Chain D, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|E Chain E, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|F Chain F, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|G Chain G, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|H Chain H, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|I Chain I, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|J Chain J, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|K Chain K, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|L Chain L, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|M Chain M, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|N Chain N, Crystal Structure Of The Chaperonin Groel-E461k
Length = 548
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 69/126 (54%), Gaps = 8/126 (6%)
Query: 16 GERARMASFVGAMAIADLVKTTLGPKGMDKIL-QSTGRGREVTVTNDGATILKSLHID-- 72
G AR+ G +AD VK TLGPKG + +L +S G T+T DG ++ + + ++
Sbjct: 9 GNDARVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFG---APTITKDGVSVAREIELEDK 65
Query: 73 --NPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAE 130
N A+++ +++ +D GDGTT+ VLA ++ E K VAA ++PM + G A
Sbjct: 66 FENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVT 125
Query: 131 CARDAL 136
A + L
Sbjct: 126 AAVEEL 131
>pdb|1ASS|A Chain A, Apical Domain Of The Chaperonin From Thermoplasma
Acidophilum
pdb|1ASX|A Chain A, Apical Domain Of The Chaperonin From Thermoplasma
Acidophilum
Length = 159
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 76/149 (51%), Gaps = 2/149 (1%)
Query: 212 GFILDK-KIGIGQPKRIENAKILVANTAMDTDKVKIYGARVRVDSMSKAAEIEGAEKQKM 270
G ++DK K+ P ++NAKI + ++A++ K +I A+V++ SK + E
Sbjct: 3 GIVIDKEKVHSKMPDVVKNAKIALIDSALEIKKTEIE-AKVQISDPSKIQDFLNQETNTF 61
Query: 271 REKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIASTF 330
++ V+KI G N + ++ I + + A GI A+ +E+LA TG +I +
Sbjct: 62 KQMVEKIKKSGANVVLCQKGIDDVAQHYLAKEGIYAVRRVKKSDMEKLAKATGAKIVTDL 121
Query: 331 DNPESVKLGHCKLIEEIMIGEDKLIHFSG 359
D+ LG + +EE IG+D++ G
Sbjct: 122 DDLTPSVLGEAETVEERKIGDDRMTFVMG 150
>pdb|3CAU|A Chain A, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|B Chain B, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|C Chain C, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|D Chain D, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|E Chain E, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|F Chain F, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|G Chain G, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|H Chain H, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|I Chain I, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|J Chain J, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|K Chain K, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|L Chain L, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|M Chain M, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|N Chain N, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
Length = 526
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 68/126 (53%), Gaps = 8/126 (6%)
Query: 16 GERARMASFVGAMAIADLVKTTLGPKGMDKIL-QSTGRGREVTVTNDGATILKSLHID-- 72
G A + G +AD VK TLGPKG + +L +S G T+T DG ++ + + ++
Sbjct: 8 GNDAGVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFG---APTITKDGVSVAREIELEDK 64
Query: 73 --NPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAE 130
N A+++ +++ +D GDGTT+ VLA ++ E K VAA ++PM + G A
Sbjct: 65 FENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVT 124
Query: 131 CARDAL 136
A + L
Sbjct: 125 VAVEEL 130
>pdb|1GR5|A Chain A, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|B Chain B, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|C Chain C, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|D Chain D, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|E Chain E, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|F Chain F, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|G Chain G, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|H Chain H, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|I Chain I, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|J Chain J, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|K Chain K, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|L Chain L, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|M Chain M, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|N Chain N, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|2C7E|A Chain A, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|B Chain B, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|C Chain C, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|D Chain D, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|E Chain E, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|F Chain F, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|G Chain G, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|H Chain H, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|I Chain I, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|J Chain J, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|K Chain K, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|L Chain L, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|M Chain M, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|N Chain N, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
Length = 547
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 68/126 (53%), Gaps = 8/126 (6%)
Query: 16 GERARMASFVGAMAIADLVKTTLGPKGMDKIL-QSTGRGREVTVTNDGATILKSLHID-- 72
G A + G +AD VK TLGPKG + +L +S G T+T DG ++ + + ++
Sbjct: 8 GNDAGVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFG---APTITKDGVSVAREIELEDK 64
Query: 73 --NPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAE 130
N A+++ +++ +D GDGTT+ VLA ++ E K VAA ++PM + G A
Sbjct: 65 FENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVT 124
Query: 131 CARDAL 136
A + L
Sbjct: 125 VAVEEL 130
>pdb|1SX3|A Chain A, Groel14-(Atpgammas)14
pdb|1SX3|B Chain B, Groel14-(Atpgammas)14
pdb|1SX3|C Chain C, Groel14-(Atpgammas)14
pdb|1SX3|D Chain D, Groel14-(Atpgammas)14
pdb|1SX3|E Chain E, Groel14-(Atpgammas)14
pdb|1SX3|F Chain F, Groel14-(Atpgammas)14
pdb|1SX3|G Chain G, Groel14-(Atpgammas)14
pdb|1SX3|H Chain H, Groel14-(Atpgammas)14
pdb|1SX3|I Chain I, Groel14-(Atpgammas)14
pdb|1SX3|J Chain J, Groel14-(Atpgammas)14
pdb|1SX3|K Chain K, Groel14-(Atpgammas)14
pdb|1SX3|L Chain L, Groel14-(Atpgammas)14
pdb|1SX3|M Chain M, Groel14-(Atpgammas)14
pdb|1SX3|N Chain N, Groel14-(Atpgammas)14
Length = 525
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 68/126 (53%), Gaps = 8/126 (6%)
Query: 16 GERARMASFVGAMAIADLVKTTLGPKGMDKIL-QSTGRGREVTVTNDGATILKSLHID-- 72
G A + G +AD VK TLGPKG + +L +S G T+T DG ++ + + ++
Sbjct: 8 GNDAGVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFG---APTITKDGVSVAREIELEDK 64
Query: 73 --NPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAE 130
N A+++ +++ +D GDGTT+ VLA ++ E K VAA ++PM + G A
Sbjct: 65 FENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVT 124
Query: 131 CARDAL 136
A + L
Sbjct: 125 VAVEEL 130
>pdb|1GRL|A Chain A, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|B Chain B, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|C Chain C, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|D Chain D, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|E Chain E, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|F Chain F, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|G Chain G, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
Length = 548
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 68/126 (53%), Gaps = 8/126 (6%)
Query: 16 GERARMASFVGAMAIADLVKTTLGPKGMDKIL-QSTGRGREVTVTNDGATILKSLHID-- 72
G A + G +AD VK TLGPKG + +L +S G T+T DG ++ + + ++
Sbjct: 9 GNDAGVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFG---APTITKDGVSVAREIELEDK 65
Query: 73 --NPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAE 130
N A+++ +++ +D GDGTT+ VLA ++ E K VAA ++PM + G A
Sbjct: 66 FENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVT 125
Query: 131 CARDAL 136
A + L
Sbjct: 126 VAVEEL 131
>pdb|1SS8|A Chain A, Groel
pdb|1SS8|B Chain B, Groel
pdb|1SS8|C Chain C, Groel
pdb|1SS8|D Chain D, Groel
pdb|1SS8|E Chain E, Groel
pdb|1SS8|F Chain F, Groel
pdb|1SS8|G Chain G, Groel
Length = 524
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 68/126 (53%), Gaps = 8/126 (6%)
Query: 16 GERARMASFVGAMAIADLVKTTLGPKGMDKIL-QSTGRGREVTVTNDGATILKSLHID-- 72
G A + G +AD VK TLGPKG + +L +S G T+T DG ++ + + ++
Sbjct: 8 GNDAGVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFG---APTITKDGVSVAREIELEDK 64
Query: 73 --NPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAE 130
N A+++ +++ +D GDGTT+ VLA ++ E K VAA ++PM + G A
Sbjct: 65 FENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVT 124
Query: 131 CARDAL 136
A + L
Sbjct: 125 VAVEEL 130
>pdb|1KP8|A Chain A, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|B Chain B, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|C Chain C, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|D Chain D, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|E Chain E, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|F Chain F, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|G Chain G, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|H Chain H, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|I Chain I, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|J Chain J, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|K Chain K, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|L Chain L, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|M Chain M, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|N Chain N, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
Length = 547
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 68/126 (53%), Gaps = 8/126 (6%)
Query: 16 GERARMASFVGAMAIADLVKTTLGPKGMDKIL-QSTGRGREVTVTNDGATILKSLHID-- 72
G A + G +AD VK TLGPKG + +L +S G T+T DG ++ + + ++
Sbjct: 8 GNDAGVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFG---APTITKDGVSVAREIELEDK 64
Query: 73 --NPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAE 130
N A+++ +++ +D GDGTT+ VLA ++ E K VAA ++PM + G A
Sbjct: 65 FENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVT 124
Query: 131 CARDAL 136
A + L
Sbjct: 125 VAVEEL 130
>pdb|1OEL|A Chain A, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|B Chain B, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|C Chain C, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|D Chain D, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|E Chain E, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|F Chain F, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|G Chain G, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
Length = 547
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 68/126 (53%), Gaps = 8/126 (6%)
Query: 16 GERARMASFVGAMAIADLVKTTLGPKGMDKIL-QSTGRGREVTVTNDGATILKSLHID-- 72
G A + G +AD VK TLGPKG + +L +S G T+T DG ++ + + ++
Sbjct: 8 GNDAGVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFG---APTITKDGVSVAREIELEDK 64
Query: 73 --NPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAE 130
N A+++ +++ +D GDGTT+ VLA ++ E K VAA ++PM + G A
Sbjct: 65 FENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVT 124
Query: 131 CARDAL 136
A + L
Sbjct: 125 VAVEEL 130
>pdb|1GML|A Chain A, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Triclinic)
pdb|1GML|B Chain B, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Triclinic)
pdb|1GML|C Chain C, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Triclinic)
pdb|1GML|D Chain D, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Triclinic)
pdb|1GN1|A Chain A, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|B Chain B, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|C Chain C, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|D Chain D, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|E Chain E, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|F Chain F, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|G Chain G, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|H Chain H, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
Length = 178
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 37/176 (21%), Positives = 79/176 (44%), Gaps = 9/176 (5%)
Query: 204 LKDSFLDEGFILDKKIGIGQPKR-IENAKILVANTAMDTDKVKIYGARVRVDSMSKAAEI 262
++DS + G +++K + + +R I+N +I++ +++++ K + + + I
Sbjct: 1 MEDSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGE-SQTDIEITREEDFTRI 59
Query: 263 EGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVT 322
E++ + + + II + + + I + + A + AI R+A
Sbjct: 60 LQMEEEYIHQLCEDIIQLKPDVVITEKGISDLAQHYLMRANVTAIRRVRKTDNNRIARAC 119
Query: 323 GGEIASTFDNPESVKLGH----CKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGAS 374
G I S PE ++ L+E IG++ + + +ACTI+LRGAS
Sbjct: 120 GARIVS---RPEELREDDVGTGAGLLEIKKIGDEYFTFITDCKDPKACTILLRGAS 172
>pdb|1MG7|A Chain A, Crystal Structure Of Xol-1
pdb|1MG7|B Chain B, Crystal Structure Of Xol-1
Length = 417
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 53/124 (42%), Gaps = 12/124 (9%)
Query: 111 LVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQD 170
V +HP +M A+ LL+ +N+E+ +TF L+ MT S + Q+
Sbjct: 211 FVKTDLHPEDFTP--QMFPSQAKAKLLRDAFNNEEDEDTFPDILVPAYMTAHSKNRVRQE 268
Query: 171 KEHFGQLAVDAVMRLKGSTN----LESIQIIKKPGGSL----KDSFLDEGFILDKKIGIG 222
++ D+ + L+ N +E ++ + GG L KDSF D+ I I I
Sbjct: 269 DYTCLEVEFDSQVALEKLMNEHEQVEGFEV--QQGGILVALKKDSFFDDELIEKIAIAIA 326
Query: 223 QPKR 226
R
Sbjct: 327 TESR 330
>pdb|3FNN|A Chain A, Biochemical And Structural Analysis Of An Atypical Thyx:
Corynebacterium Glutamicum Nchu 87078 Depends On Thya
For Thymidine Biosynthesis
Length = 256
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 41/109 (37%), Gaps = 13/109 (11%)
Query: 311 DFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIM-IGEDKLIHFSGVEMGQACTIV 369
D +G E L G TFD P + + IM +G L+ + T+
Sbjct: 34 DVEGAEALVEFAGRACYETFDKPNPRTASNAAYLRHIMEVGHTALLEHAN------ATMY 87
Query: 370 LRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDE 418
+RG S E R H + LSQ S G E+V+ +DE
Sbjct: 88 IRGISRSATHELVRHRHFSFSQLSQRFVHS------GESEVVVPTLIDE 130
>pdb|1ZO0|A Chain A, Nmr Structure Of Antizyme Isoform 1 From Rat
Length = 126
Score = 30.0 bits (66), Expect = 3.6, Method: Composition-based stats.
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 504 EAAEMILRVDEIITCAPRRREDR 526
E AE LR D + C P+ REDR
Sbjct: 68 EFAEEQLRADHVFICFPKNREDR 90
>pdb|1YVP|A Chain A, Ro Autoantigen Complexed With Rnas
pdb|1YVP|B Chain B, Ro Autoantigen Complexed With Rnas
pdb|1YVR|A Chain A, Ro Autoantigen
pdb|2I91|A Chain A, 60kda Ro Autoantigen In Complex With A Fragment Of
Misfolded Rna
pdb|2I91|B Chain B, 60kda Ro Autoantigen In Complex With A Fragment Of
Misfolded Rna
Length = 538
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 32/71 (45%)
Query: 52 RGREVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKL 111
R +T+ I KSL D P +L ++ K+ D V +S V E L + L
Sbjct: 255 REHLLTIHLKSKEIWKSLLQDMPLTALLRNLGKMTADSVLAPASSEVSSVCERLTNEKLL 314
Query: 112 VAAKIHPMTII 122
A+IHP I+
Sbjct: 315 KKARIHPFHIL 325
>pdb|3GE9|A Chain A, A Structurally Atypical Thyx From Corynebacterium
Glutamicum Nchu 87078 Is Not Required For Thymidylate
Biosynthesis
Length = 255
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 41/109 (37%), Gaps = 13/109 (11%)
Query: 311 DFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIM-IGEDKLIHFSGVEMGQACTIV 369
D +G E L G TFD P + + IM +G L+ + T+
Sbjct: 33 DVEGAEALVEFAGRACYETFDKPNPRTASNAAYLRHIMEVGHTALLEHAN------ATMY 86
Query: 370 LRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDE 418
+RG S E R H + LSQ S G E+V+ +DE
Sbjct: 87 IRGISRSATHELVRHRHFSFSQLSQRFVHS------GESEVVVPTLIDE 129
>pdb|2XRM|A Chain A, Processed Intracellular Subtilisin From B. Clausii
Length = 311
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 8/81 (9%)
Query: 178 AVDAVMRLKGSTNL-ESIQIIKKPGGSLKDSFLDEGFILDKKIGIGQPKRIENAKILVAN 236
AVD +RL TN E I I+ PG +K ++LD G+ + P + A L+ N
Sbjct: 190 AVDFDLRLSDFTNTNEEIDIVA-PGVGIKSTYLDSGYAELSGTAMAAP-HVAGALALIIN 247
Query: 237 TAMDTDK-----VKIYGARVR 252
A D K +IY VR
Sbjct: 248 LAEDAFKRSLSETEIYAQLVR 268
>pdb|2WV7|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
Length = 329
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 8/81 (9%)
Query: 178 AVDAVMRLKGSTNL-ESIQIIKKPGGSLKDSFLDEGFILDKKIGIGQPKRIENAKILVAN 236
AVD +RL TN E I I+ PG +K ++LD G+ + P + A L+ N
Sbjct: 208 AVDFDLRLSDFTNTNEEIDIVA-PGVGIKSTYLDSGYAELSGTAMAAP-HVAGALALIIN 265
Query: 237 TAMDTDK-----VKIYGARVR 252
A D K +IY VR
Sbjct: 266 LAEDAFKRSLSETEIYAQLVR 286
>pdb|1LTK|A Chain A, Crystal Structure Of Phosphoglycerate Kinase From
Plasmodium Falciparum, In The Open Conformation
pdb|1LTK|B Chain B, Crystal Structure Of Phosphoglycerate Kinase From
Plasmodium Falciparum, In The Open Conformation
pdb|1LTK|C Chain C, Crystal Structure Of Phosphoglycerate Kinase From
Plasmodium Falciparum, In The Open Conformation
Length = 425
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 109 EKLVAAKIHPMTIISGFRMAAE---CARDALLQKVVDNKENAETFKSDLMKIAMTTLSSK 165
+K+ AAK + + ++ R E DA KV NKE+ E F++DL K+A ++
Sbjct: 114 DKINAAKENSVILLENLRFHIEEEGKGVDANGNKVKANKEDVEKFQNDLTKLADVFINDA 173
Query: 166 ILSQDKEHFGQLAVDAVMRLKG 187
+ + H + V ++ G
Sbjct: 174 FGTAHRAHSSXVGVKLNVKASG 195
>pdb|3OZA|A Chain A, Crystal Structure Of Plasmodium Falciparum
3-Phosphoglycerate Kinase
pdb|3OZA|B Chain B, Crystal Structure Of Plasmodium Falciparum
3-Phosphoglycerate Kinase
pdb|3OZA|C Chain C, Crystal Structure Of Plasmodium Falciparum
3-Phosphoglycerate Kinase
Length = 424
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 109 EKLVAAKIHPMTIISGFRMAAE---CARDALLQKVVDNKENAETFKSDLMKIAMTTLSSK 165
+K+ AAK + + ++ R E DA KV NKE+ E F++DL K+A ++
Sbjct: 113 DKINAAKENSVILLENLRFHIEEEGKGVDANGNKVKANKEDVEKFQNDLTKLADVFINDA 172
Query: 166 ILSQDKEHFGQLAVDAVMRLKG 187
+ + H + V ++ G
Sbjct: 173 FGTAHRAHSSXVGVKLNVKASG 194
>pdb|2X8J|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
Length = 327
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 8/81 (9%)
Query: 178 AVDAVMRLKGSTNL-ESIQIIKKPGGSLKDSFLDEGFILDKKIGIGQPKRIENAKILVAN 236
AVD +RL TN E I I+ PG +K ++LD G+ + P + A L+ N
Sbjct: 208 AVDFDLRLSDFTNTNEEIDIVA-PGVGIKSTYLDSGYAELSGTAMAAP-HVAGALALIIN 265
Query: 237 TAMDTDK-----VKIYGARVR 252
A D K +IY VR
Sbjct: 266 LAEDAFKRSLSETEIYAQLVR 286
>pdb|2X8J|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
Length = 327
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 8/81 (9%)
Query: 178 AVDAVMRLKGSTNL-ESIQIIKKPGGSLKDSFLDEGFILDKKIGIGQPKRIENAKILVAN 236
AVD +RL TN E I I+ PG +K ++LD G+ + P + A L+ N
Sbjct: 208 AVDFDLRLSDFTNTNEEIDIVA-PGVGIKSTYLDSGYAELSGTAMAAP-HVAGALALIIN 265
Query: 237 TAMDTDK-----VKIYGARVR 252
A D K +IY VR
Sbjct: 266 LAEDAFKRSLSETEIYAQLVR 286
>pdb|3OZ7|A Chain A, Crystal Structure Of 3-Phosphopglycerate Kinase Of
Plasmodium Falciparum
pdb|3OZ7|B Chain B, Crystal Structure Of 3-Phosphopglycerate Kinase Of
Plasmodium Falciparum
Length = 417
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 109 EKLVAAKIHPMTIISGFRMAAE---CARDALLQKVVDNKENAETFKSDLMKIAMTTLSSK 165
+K+ AAK + + ++ R E DA KV NKE+ E F++DL K+A ++
Sbjct: 107 DKINAAKENSVILLENLRFHIEEEGKGVDANGNKVKANKEDVEKFQNDLTKLADVFINDA 166
Query: 166 ILSQDKEHFGQLAVDAVMRLKG 187
+ + H + V ++ G
Sbjct: 167 FGTAHRAHSSMVGVKLNVKASG 188
>pdb|2ICS|A Chain A, Crystal Structure Of An Adenine Deaminase
Length = 379
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Query: 259 AAEIEGAEKQKMREKVQKIIAHG-----INCFVNRQLIYNFPEELFADAGILAIEHADFD 313
AA I G+ K+ + + ++ G ++CF L Y++P+E+ G+ + A
Sbjct: 33 AATISGSAKETIHLEPGTYVSAGWIDDHVHCFEKXALYYDYPDEIGVKKGVTTVIDAGTT 92
Query: 314 GIERL 318
G E +
Sbjct: 93 GAENI 97
>pdb|1DWU|A Chain A, Ribosomal Protein L1
pdb|1DWU|B Chain B, Ribosomal Protein L1
Length = 213
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 50/114 (43%), Gaps = 22/114 (19%)
Query: 1 MGVERIFRDEANEEKGERARMAS--------FVGAMAIADLVKTTLGPKGMDKILQSTGR 52
MG+ I +DE EE G+ +MA F+ + LV TLGP +L G+
Sbjct: 75 MGLTVIRQDEL-EELGKNKKMAKKIANEHDFFIAQADMMPLVGKTLGP-----VLGPRGK 128
Query: 53 GREVTVTNDGATIL-----KSLHI---DNPAAKVLVDISKVQDDEVGDGTTSVV 98
+ N T L K++ I D P VLV K+ D+E+ + +++
Sbjct: 129 MPQPVPANANLTPLVERLKKTVLINTRDKPLFHVLVGNEKMSDEELAENIEAIL 182
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,107,917
Number of Sequences: 62578
Number of extensions: 571842
Number of successful extensions: 1861
Number of sequences better than 100.0: 73
Number of HSP's better than 100.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1638
Number of HSP's gapped (non-prelim): 92
length of query: 527
length of database: 14,973,337
effective HSP length: 103
effective length of query: 424
effective length of database: 8,527,803
effective search space: 3615788472
effective search space used: 3615788472
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)