Query 009719
Match_columns 527
No_of_seqs 415 out of 1616
Neff 4.8
Searched_HMMs 46136
Date Thu Mar 28 16:31:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009719.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009719hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03141 Methyltransf_29: Puta 100.0 3E-157 7E-162 1243.0 25.1 427 88-520 1-506 (506)
2 PF03141 Methyltransf_29: Puta 100.0 2.8E-35 6.1E-40 313.6 9.5 197 303-522 33-262 (506)
3 COG2226 UbiE Methylase involve 99.4 1.4E-13 3.1E-18 137.2 4.7 77 157-234 75-156 (238)
4 PF08241 Methyltransf_11: Meth 99.4 6.6E-13 1.4E-17 108.7 4.7 85 144-232 8-95 (95)
5 PLN02336 phosphoethanolamine N 99.4 1E-12 2.2E-17 140.9 7.4 90 143-235 48-143 (475)
6 PF01209 Ubie_methyltran: ubiE 99.2 5.5E-12 1.2E-16 125.1 4.6 75 159-234 74-153 (233)
7 PLN02232 ubiquinone biosynthes 99.1 1.3E-10 2.9E-15 108.3 6.4 71 163-234 3-81 (160)
8 PLN02233 ubiquinone biosynthes 99.0 5.5E-10 1.2E-14 112.0 7.1 74 161-235 102-183 (261)
9 KOG1540 Ubiquinone biosynthesi 98.9 1.5E-09 3.3E-14 109.2 6.7 70 164-234 137-214 (296)
10 PRK10258 biotin biosynthesis p 98.9 4.6E-09 9.9E-14 103.5 7.2 88 144-235 54-141 (251)
11 PLN02244 tocopherol O-methyltr 98.8 5.7E-09 1.2E-13 108.6 7.3 71 164-235 148-224 (340)
12 PRK05785 hypothetical protein; 98.7 1.4E-08 3.1E-13 100.0 6.6 73 159-235 76-149 (226)
13 PLN02396 hexaprenyldihydroxybe 98.7 1E-08 2.2E-13 106.6 5.4 91 143-237 138-238 (322)
14 PRK14103 trans-aconitate 2-met 98.6 3.3E-08 7.1E-13 98.0 6.0 72 160-235 56-127 (255)
15 PTZ00098 phosphoethanolamine N 98.6 7.1E-08 1.5E-12 97.0 6.8 76 160-235 78-157 (263)
16 KOG4300 Predicted methyltransf 98.6 1.4E-07 3.1E-12 92.9 7.8 88 159-250 101-195 (252)
17 PLN02336 phosphoethanolamine N 98.5 1.6E-07 3.5E-12 101.1 7.4 75 160-235 292-370 (475)
18 PRK08317 hypothetical protein; 98.5 1.3E-07 2.9E-12 90.0 5.5 75 160-235 47-125 (241)
19 PRK11088 rrmA 23S rRNA methylt 98.5 1.1E-07 2.3E-12 95.6 5.0 70 159-236 114-183 (272)
20 PRK11873 arsM arsenite S-adeno 98.5 2.8E-07 6.1E-12 92.0 7.0 73 162-235 107-184 (272)
21 TIGR00740 methyltransferase, p 98.5 3.3E-07 7.2E-12 89.9 7.2 74 160-235 82-162 (239)
22 PRK11036 putative S-adenosyl-L 98.5 1.7E-07 3.6E-12 93.2 5.1 89 143-235 55-150 (255)
23 COG2227 UbiG 2-polyprenyl-3-me 98.5 1E-07 2.3E-12 95.3 3.5 93 143-239 66-166 (243)
24 PF13489 Methyltransf_23: Meth 98.4 9.2E-08 2E-12 86.0 2.5 86 143-237 33-118 (161)
25 PRK01683 trans-aconitate 2-met 98.4 4.7E-07 1E-11 89.5 7.2 73 161-235 59-131 (258)
26 TIGR02072 BioC biotin biosynth 98.4 3.1E-07 6.7E-12 87.8 5.3 90 144-235 46-136 (240)
27 PLN02490 MPBQ/MSBQ methyltrans 98.4 3.9E-07 8.4E-12 95.7 6.4 75 160-235 140-216 (340)
28 TIGR02752 MenG_heptapren 2-hep 98.4 2.6E-07 5.6E-12 89.6 4.7 71 164-235 77-152 (231)
29 PF13649 Methyltransf_25: Meth 98.3 2.7E-07 5.8E-12 78.7 2.7 70 159-228 26-101 (101)
30 smart00138 MeTrc Methyltransfe 98.3 8.7E-07 1.9E-11 89.5 6.4 78 158-235 133-243 (264)
31 PRK15068 tRNA mo(5)U34 methylt 98.3 9.7E-07 2.1E-11 91.6 6.5 70 164-235 152-227 (322)
32 TIGR00477 tehB tellurite resis 98.3 3.2E-06 7E-11 81.2 9.4 126 143-274 41-178 (195)
33 PRK11207 tellurite resistance 98.3 1.6E-06 3.5E-11 83.4 6.7 86 143-232 41-132 (197)
34 PF08241 Methyltransf_11: Meth 98.3 1.3E-07 2.8E-12 77.3 -1.0 91 378-479 1-95 (95)
35 smart00828 PKS_MT Methyltransf 98.2 2.5E-06 5.4E-11 82.4 5.6 72 162-235 28-105 (224)
36 TIGR00452 methyltransferase, p 98.1 4E-06 8.6E-11 87.2 6.4 88 143-235 128-226 (314)
37 PRK15451 tRNA cmo(5)U34 methyl 98.1 4.1E-06 8.9E-11 83.2 6.0 74 160-235 85-165 (247)
38 PF12847 Methyltransf_18: Meth 98.1 4.7E-06 1E-10 71.2 5.4 89 143-235 12-112 (112)
39 PF08242 Methyltransf_12: Meth 98.1 6.8E-07 1.5E-11 75.5 0.1 85 144-230 8-99 (99)
40 PRK06922 hypothetical protein; 98.1 2.5E-06 5.4E-11 95.9 4.6 77 159-235 444-538 (677)
41 TIGR01934 MenG_MenH_UbiE ubiqu 98.0 6E-06 1.3E-10 78.4 5.7 74 161-235 68-144 (223)
42 TIGR03587 Pse_Me-ase pseudamin 98.0 8.1E-06 1.8E-10 79.5 6.4 73 159-234 69-142 (204)
43 PF13847 Methyltransf_31: Meth 98.0 6.4E-06 1.4E-10 75.3 5.2 71 163-235 34-111 (152)
44 PRK12335 tellurite resistance 98.0 8.8E-06 1.9E-10 82.7 6.5 86 144-233 132-222 (287)
45 PRK00107 gidB 16S rRNA methylt 98.0 2.7E-05 5.9E-10 75.2 8.9 151 352-521 27-187 (187)
46 KOG3010 Methyltransferase [Gen 98.0 8.8E-06 1.9E-10 81.8 5.1 118 160-292 58-183 (261)
47 PRK00216 ubiE ubiquinone/menaq 97.9 1.2E-05 2.6E-10 77.2 5.7 74 161-235 80-159 (239)
48 PF13489 Methyltransf_23: Meth 97.9 6.6E-07 1.4E-11 80.4 -3.5 96 372-483 21-117 (161)
49 PRK11705 cyclopropane fatty ac 97.9 2.3E-05 5E-10 83.4 6.4 87 143-235 178-268 (383)
50 PRK06202 hypothetical protein; 97.8 3.5E-05 7.6E-10 75.4 6.9 74 159-234 90-166 (232)
51 PRK05134 bifunctional 3-demeth 97.8 3.2E-05 7E-10 75.2 6.1 89 144-236 60-153 (233)
52 PRK00121 trmB tRNA (guanine-N( 97.7 3.4E-05 7.4E-10 74.6 5.1 75 160-235 67-157 (202)
53 PRK10258 biotin biosynthesis p 97.7 2.4E-05 5.3E-10 77.2 4.0 100 369-481 38-140 (251)
54 PF07021 MetW: Methionine bios 97.7 2.6E-05 5.7E-10 76.1 4.1 87 144-239 25-115 (193)
55 TIGR01983 UbiG ubiquinone bios 97.7 5E-05 1.1E-09 73.1 6.0 86 146-235 59-150 (224)
56 PRK00107 gidB 16S rRNA methylt 97.7 0.00021 4.6E-09 69.1 9.3 90 160-262 72-166 (187)
57 PF02353 CMAS: Mycolic acid cy 97.7 5.7E-05 1.2E-09 77.1 5.4 86 143-234 73-166 (273)
58 KOG1270 Methyltransferases [Co 97.7 4.9E-05 1.1E-09 77.4 4.8 87 143-236 96-197 (282)
59 PLN02233 ubiquinone biosynthes 97.6 3.3E-05 7.1E-10 77.8 3.5 95 375-481 75-182 (261)
60 COG4627 Uncharacterized protei 97.6 9.7E-06 2.1E-10 77.0 -0.8 52 186-237 37-89 (185)
61 PRK01544 bifunctional N5-gluta 97.6 0.00043 9.4E-09 76.3 11.2 125 373-500 347-483 (506)
62 KOG2940 Predicted methyltransf 97.6 2.7E-05 5.9E-10 78.2 1.4 89 143-234 83-174 (325)
63 TIGR00537 hemK_rel_arch HemK-r 97.5 0.00064 1.4E-08 64.0 10.5 88 143-235 30-141 (179)
64 PLN02244 tocopherol O-methyltr 97.5 4.8E-05 1E-09 79.4 3.0 94 373-481 118-223 (340)
65 PRK08317 hypothetical protein; 97.5 5E-05 1.1E-09 72.4 2.5 97 372-481 18-124 (241)
66 PRK12335 tellurite resistance 97.5 5.4E-05 1.2E-09 77.0 2.8 114 376-503 123-257 (287)
67 PF05401 NodS: Nodulation prot 97.5 0.00018 4E-09 70.6 6.2 129 143-280 54-191 (201)
68 PRK14103 trans-aconitate 2-met 97.5 7.5E-05 1.6E-09 74.2 3.5 99 368-480 24-125 (255)
69 smart00828 PKS_MT Methyltransf 97.4 3.3E-05 7.2E-10 74.5 0.4 94 375-481 1-104 (224)
70 PRK15068 tRNA mo(5)U34 methylt 97.4 7.1E-05 1.5E-09 77.9 2.3 95 375-480 124-225 (322)
71 PF02353 CMAS: Mycolic acid cy 97.4 3.5E-05 7.6E-10 78.6 -0.1 101 369-480 60-165 (273)
72 TIGR00091 tRNA (guanine-N(7)-) 97.4 0.00019 4.1E-09 68.9 4.7 71 164-235 47-133 (194)
73 TIGR02469 CbiT precorrin-6Y C5 97.4 0.00028 6E-09 60.8 5.4 87 143-234 30-122 (124)
74 PLN03075 nicotianamine synthas 97.4 0.00029 6.3E-09 73.0 6.3 76 159-235 151-234 (296)
75 TIGR00406 prmA ribosomal prote 97.4 0.00013 2.8E-09 74.5 3.6 114 375-503 161-281 (288)
76 TIGR01177 conserved hypothetic 97.4 0.00051 1.1E-08 71.3 8.0 77 160-236 207-296 (329)
77 TIGR00477 tehB tellurite resis 97.4 4.9E-05 1.1E-09 73.1 0.4 93 375-479 32-131 (195)
78 TIGR02021 BchM-ChlM magnesium 97.4 0.00022 4.8E-09 69.1 5.0 86 143-234 66-158 (219)
79 TIGR00138 gidB 16S rRNA methyl 97.3 0.00096 2.1E-08 63.9 9.0 66 164-235 73-143 (181)
80 PF05148 Methyltransf_8: Hypot 97.3 0.00016 3.5E-09 71.6 3.8 77 182-264 108-184 (219)
81 TIGR02752 MenG_heptapren 2-hep 97.3 9.1E-05 2E-09 71.9 2.0 95 375-481 47-151 (231)
82 TIGR02081 metW methionine bios 97.3 0.00031 6.6E-09 67.1 5.4 67 163-235 42-110 (194)
83 TIGR00537 hemK_rel_arch HemK-r 97.3 0.00034 7.5E-09 65.8 5.6 123 375-503 21-163 (179)
84 PTZ00098 phosphoethanolamine N 97.3 9.1E-05 2E-09 74.7 1.7 94 375-481 54-156 (263)
85 TIGR03840 TMPT_Se_Te thiopurin 97.3 0.00058 1.3E-08 67.2 7.2 84 146-232 48-150 (213)
86 PRK11207 tellurite resistance 97.3 5E-05 1.1E-09 73.1 -0.4 93 375-479 32-132 (197)
87 KOG1331 Predicted methyltransf 97.3 0.00015 3.3E-09 74.5 2.8 100 133-234 30-143 (293)
88 PRK08287 cobalt-precorrin-6Y C 97.3 0.00023 5.1E-09 67.4 3.8 110 374-499 32-150 (187)
89 PF12847 Methyltransf_18: Meth 97.3 3.5E-05 7.7E-10 65.8 -1.7 98 375-481 3-111 (112)
90 PRK11088 rrmA 23S rRNA methylt 97.2 0.00019 4E-09 72.3 3.0 101 374-492 86-193 (272)
91 TIGR00138 gidB 16S rRNA methyl 97.2 0.00014 3E-09 69.7 1.9 131 352-503 25-165 (181)
92 PRK00121 trmB tRNA (guanine-N( 97.2 0.00017 3.7E-09 69.8 2.5 125 373-502 40-178 (202)
93 TIGR00406 prmA ribosomal prote 97.2 0.001 2.2E-08 68.0 7.8 72 160-235 185-260 (288)
94 TIGR02072 BioC biotin biosynth 97.2 0.00026 5.6E-09 67.7 3.2 93 375-481 36-135 (240)
95 KOG1975 mRNA cap methyltransfe 97.1 0.00054 1.2E-08 71.8 5.3 91 147-237 129-240 (389)
96 KOG3045 Predicted RNA methylas 97.1 0.00087 1.9E-08 68.5 6.7 79 182-266 214-292 (325)
97 PRK11705 cyclopropane fatty ac 97.1 0.00021 4.6E-09 76.1 2.4 93 375-481 169-267 (383)
98 TIGR00452 methyltransferase, p 97.1 0.00029 6.4E-09 73.4 3.3 96 375-480 123-224 (314)
99 PRK01683 trans-aconitate 2-met 97.1 0.00032 7E-09 69.4 3.3 115 369-501 27-154 (258)
100 PRK14968 putative methyltransf 97.1 0.00052 1.1E-08 63.8 4.2 141 374-520 24-188 (188)
101 TIGR02716 C20_methyl_CrtF C-20 97.1 0.00086 1.9E-08 68.5 6.2 87 143-235 160-255 (306)
102 PF01209 Ubie_methyltran: ubiE 97.1 0.00011 2.5E-09 73.2 -0.3 113 352-481 33-153 (233)
103 PLN02396 hexaprenyldihydroxybe 97.1 0.00034 7.3E-09 73.2 3.0 95 375-481 133-235 (322)
104 PRK00517 prmA ribosomal protei 97.1 0.00051 1.1E-08 68.5 4.2 108 375-503 121-236 (250)
105 PRK07580 Mg-protoporphyrin IX 97.1 0.0011 2.4E-08 63.9 6.3 83 143-231 74-163 (230)
106 PRK13944 protein-L-isoaspartat 97.1 0.0019 4.1E-08 62.6 7.9 65 164-235 104-174 (205)
107 cd02440 AdoMet_MTases S-adenos 97.1 0.0019 4.2E-08 51.5 6.7 71 163-233 27-103 (107)
108 PRK09489 rsmC 16S ribosomal RN 97.0 0.0024 5.1E-08 67.3 9.1 120 143-272 207-334 (342)
109 PRK13255 thiopurine S-methyltr 97.0 0.0013 2.9E-08 64.9 6.7 83 147-232 52-153 (218)
110 PRK14121 tRNA (guanine-N(7)-)- 97.0 0.0011 2.3E-08 71.3 6.3 71 164-235 153-236 (390)
111 PRK11036 putative S-adenosyl-L 97.0 0.00015 3.4E-09 72.1 -0.1 93 375-480 46-148 (255)
112 PRK00517 prmA ribosomal protei 97.0 0.0018 3.8E-08 64.7 6.9 90 160-261 145-234 (250)
113 TIGR03534 RF_mod_PrmC protein- 96.9 0.00045 9.7E-09 67.4 2.5 123 375-501 89-237 (251)
114 PF08003 Methyltransf_9: Prote 96.9 0.0015 3.3E-08 68.0 6.5 90 143-234 122-219 (315)
115 TIGR00438 rrmJ cell division p 96.9 0.00085 1.8E-08 63.7 4.3 132 375-519 34-186 (188)
116 COG4106 Tam Trans-aconitate me 96.9 0.0046 9.9E-08 62.0 9.5 173 159-367 56-232 (257)
117 PLN02585 magnesium protoporphy 96.9 0.0017 3.6E-08 67.8 6.7 86 143-236 155-251 (315)
118 PRK11188 rrmJ 23S rRNA methylt 96.9 0.00071 1.5E-08 66.2 3.6 55 180-235 93-166 (209)
119 KOG1269 SAM-dependent methyltr 96.9 0.00071 1.5E-08 72.0 3.8 52 181-233 163-214 (364)
120 PRK14968 putative methyltransf 96.9 0.0075 1.6E-07 56.0 10.2 89 143-235 34-149 (188)
121 COG1041 Predicted DNA modifica 96.9 0.0018 3.9E-08 68.5 6.6 89 147-235 209-311 (347)
122 TIGR03438 probable methyltrans 96.9 0.0011 2.4E-08 68.1 5.0 89 147-235 78-178 (301)
123 smart00138 MeTrc Methyltransfe 96.9 0.0006 1.3E-08 69.0 2.9 133 342-484 68-245 (264)
124 PRK09328 N5-glutamine S-adenos 96.8 0.0035 7.7E-08 62.3 7.6 140 375-520 110-275 (275)
125 PRK14967 putative methyltransf 96.8 0.0038 8.2E-08 61.1 7.6 74 161-235 63-160 (223)
126 TIGR01934 MenG_MenH_UbiE ubiqu 96.8 0.00083 1.8E-08 63.8 2.8 94 374-481 40-143 (223)
127 PRK13942 protein-L-isoaspartat 96.8 0.0023 4.9E-08 62.6 5.8 64 164-234 108-176 (212)
128 COG4976 Predicted methyltransf 96.7 0.00041 8.9E-09 69.9 0.4 89 143-235 136-226 (287)
129 PRK04266 fibrillarin; Provisio 96.7 0.0063 1.4E-07 60.6 8.7 76 164-243 103-187 (226)
130 PRK15001 SAM-dependent 23S rib 96.7 0.01 2.2E-07 63.6 10.9 130 375-520 230-373 (378)
131 PRK05785 hypothetical protein; 96.7 0.0012 2.5E-08 65.4 3.3 105 352-475 35-141 (226)
132 TIGR00740 methyltransferase, p 96.7 0.00034 7.5E-09 68.7 -0.4 95 375-482 55-162 (239)
133 TIGR03534 RF_mod_PrmC protein- 96.7 0.0093 2E-07 58.2 9.4 89 143-235 98-218 (251)
134 PF08242 Methyltransf_12: Meth 96.7 0.00074 1.6E-08 57.0 1.4 91 378-477 1-99 (99)
135 TIGR00563 rsmB ribosomal RNA s 96.7 0.0029 6.3E-08 68.1 6.3 82 162-243 267-377 (426)
136 PRK10901 16S rRNA methyltransf 96.7 0.0041 9E-08 67.0 7.4 100 143-243 255-381 (427)
137 PF03848 TehB: Tellurite resis 96.6 0.0044 9.5E-08 60.7 6.5 82 147-232 45-131 (192)
138 PTZ00146 fibrillarin; Provisio 96.6 0.0035 7.5E-08 65.1 6.0 88 143-235 143-238 (293)
139 PRK13256 thiopurine S-methyltr 96.6 0.0046 9.9E-08 61.9 6.6 97 120-233 45-162 (226)
140 TIGR01983 UbiG ubiquinone bios 96.6 0.0017 3.6E-08 62.5 3.3 123 345-481 17-149 (224)
141 PF05401 NodS: Nodulation prot 96.6 0.00036 7.7E-09 68.6 -1.4 153 353-519 24-193 (201)
142 PF13659 Methyltransf_26: Meth 96.6 0.00073 1.6E-08 58.2 0.7 90 144-235 12-116 (117)
143 PRK14901 16S rRNA methyltransf 96.5 0.0044 9.6E-08 66.9 6.7 79 162-240 282-390 (434)
144 PRK00377 cbiT cobalt-precorrin 96.5 0.0019 4.2E-08 62.0 3.4 143 340-502 8-167 (198)
145 PTZ00146 fibrillarin; Provisio 96.5 0.0037 8.1E-08 64.8 5.7 98 369-480 130-236 (293)
146 TIGR00080 pimt protein-L-isoas 96.5 0.0049 1.1E-07 59.9 6.1 65 164-235 109-178 (215)
147 KOG1541 Predicted protein carb 96.5 0.0062 1.3E-07 61.3 6.8 90 144-237 62-163 (270)
148 PRK15451 tRNA cmo(5)U34 methyl 96.5 0.00075 1.6E-08 67.1 0.3 98 375-481 58-164 (247)
149 PRK05134 bifunctional 3-demeth 96.5 0.0015 3.3E-08 63.5 2.4 95 375-481 50-151 (233)
150 COG0500 SmtA SAM-dependent met 96.5 0.01 2.2E-07 48.0 6.8 71 163-235 78-156 (257)
151 PRK11188 rrmJ 23S rRNA methylt 96.5 0.0033 7.3E-08 61.5 4.6 133 375-520 53-206 (209)
152 PRK08287 cobalt-precorrin-6Y C 96.4 0.0075 1.6E-07 57.2 6.8 84 164-259 62-150 (187)
153 PF03291 Pox_MCEL: mRNA cappin 96.4 0.004 8.6E-08 65.5 5.3 74 162-235 90-187 (331)
154 PRK14904 16S rRNA methyltransf 96.4 0.0022 4.8E-08 69.4 3.4 77 163-240 281-383 (445)
155 TIGR00091 tRNA (guanine-N(7)-) 96.4 0.0019 4.2E-08 62.0 2.5 124 374-500 17-153 (194)
156 COG2226 UbiE Methylase involve 96.4 0.001 2.3E-08 67.0 0.4 112 352-481 37-156 (238)
157 PF05148 Methyltransf_8: Hypot 96.3 0.0054 1.2E-07 61.1 5.3 137 345-506 32-186 (219)
158 PRK11873 arsM arsenite S-adeno 96.3 0.0012 2.7E-08 66.0 0.8 93 375-481 79-183 (272)
159 PRK10611 chemotaxis methyltran 96.3 0.0036 7.8E-08 64.7 4.1 53 183-235 209-263 (287)
160 COG2230 Cfa Cyclopropane fatty 96.2 0.0065 1.4E-07 62.8 5.5 85 144-234 84-176 (283)
161 PRK06202 hypothetical protein; 96.2 0.0043 9.3E-08 60.8 3.8 103 370-481 57-166 (232)
162 PRK00377 cbiT cobalt-precorrin 96.2 0.012 2.7E-07 56.5 6.8 68 164-235 72-146 (198)
163 PRK04266 fibrillarin; Provisio 96.1 0.0073 1.6E-07 60.1 5.1 94 369-479 70-174 (226)
164 PRK14967 putative methyltransf 96.1 0.0043 9.4E-08 60.6 3.1 124 375-502 38-181 (223)
165 PRK14903 16S rRNA methyltransf 96.1 0.014 3.1E-07 63.2 7.3 78 163-240 268-372 (431)
166 PF06325 PrmA: Ribosomal prote 96.0 0.0058 1.3E-07 63.4 3.9 128 375-521 163-295 (295)
167 TIGR03704 PrmC_rel_meth putati 96.0 0.0065 1.4E-07 61.2 4.0 152 349-508 68-243 (251)
168 TIGR00446 nop2p NOL1/NOP2/sun 95.9 0.0054 1.2E-07 61.9 3.3 78 163-240 102-205 (264)
169 PRK13942 protein-L-isoaspartat 95.9 0.0026 5.6E-08 62.2 0.8 87 375-480 78-175 (212)
170 PRK09489 rsmC 16S ribosomal RN 95.9 0.0024 5.1E-08 67.3 0.5 130 376-521 199-337 (342)
171 cd02440 AdoMet_MTases S-adenos 95.8 0.0033 7.2E-08 50.2 1.0 95 376-480 1-103 (107)
172 TIGR00080 pimt protein-L-isoas 95.8 0.0061 1.3E-07 59.3 3.0 90 375-480 79-176 (215)
173 PRK00216 ubiE ubiquinone/menaq 95.8 0.0035 7.6E-08 60.2 1.3 93 375-481 53-158 (239)
174 PRK00312 pcm protein-L-isoaspa 95.8 0.023 5E-07 54.9 6.9 65 164-235 107-176 (212)
175 PRK06922 hypothetical protein; 95.8 0.0024 5.3E-08 72.5 0.1 105 375-481 420-537 (677)
176 TIGR02716 C20_methyl_CrtF C-20 95.8 0.0027 5.9E-08 64.8 0.4 100 369-481 145-254 (306)
177 PRK14121 tRNA (guanine-N(7)-)- 95.8 0.011 2.4E-07 63.6 4.8 121 375-500 124-256 (390)
178 PF03848 TehB: Tellurite resis 95.7 0.0023 4.9E-08 62.7 -0.6 96 376-480 33-132 (192)
179 PF13847 Methyltransf_31: Meth 95.7 0.0025 5.5E-08 58.2 -0.3 97 375-483 5-112 (152)
180 COG4976 Predicted methyltransf 95.6 0.0062 1.3E-07 61.6 2.1 141 369-521 121-286 (287)
181 PF01739 CheR: CheR methyltran 95.6 0.011 2.4E-07 57.8 3.7 53 183-235 123-176 (196)
182 PF05175 MTS: Methyltransferas 95.6 0.067 1.5E-06 50.3 8.8 100 163-271 61-170 (170)
183 TIGR00536 hemK_fam HemK family 95.6 0.02 4.3E-07 58.3 5.6 141 375-521 116-283 (284)
184 PRK13944 protein-L-isoaspartat 95.6 0.0083 1.8E-07 58.2 2.7 90 375-480 74-172 (205)
185 PF01728 FtsJ: FtsJ-like methy 95.5 0.0097 2.1E-07 56.0 3.0 146 369-520 19-180 (181)
186 PRK14902 16S rRNA methyltransf 95.5 0.01 2.2E-07 64.2 3.4 77 162-239 280-384 (444)
187 PRK11805 N5-glutamine S-adenos 95.4 0.013 2.8E-07 60.8 3.7 117 375-496 135-277 (307)
188 TIGR03533 L3_gln_methyl protei 95.4 0.083 1.8E-06 54.2 9.3 89 143-235 132-252 (284)
189 PF00891 Methyltransf_2: O-met 95.4 0.016 3.5E-07 57.0 4.0 65 167-235 133-200 (241)
190 TIGR00438 rrmJ cell division p 95.3 0.015 3.1E-07 55.3 3.5 56 180-235 74-147 (188)
191 COG2890 HemK Methylase of poly 95.3 0.043 9.4E-07 56.4 7.2 160 347-520 92-276 (280)
192 TIGR02081 metW methionine bios 95.3 0.0086 1.9E-07 57.2 1.9 90 376-480 16-108 (194)
193 PRK04457 spermidine synthase; 95.3 0.028 6.1E-07 57.0 5.5 137 372-520 65-216 (262)
194 PRK01544 bifunctional N5-gluta 95.3 0.013 2.8E-07 64.8 3.3 139 375-519 140-305 (506)
195 PLN02490 MPBQ/MSBQ methyltrans 95.2 0.0061 1.3E-07 64.4 0.6 116 375-501 115-252 (340)
196 TIGR02469 CbiT precorrin-6Y C5 95.1 0.017 3.8E-07 49.6 3.0 90 375-480 21-121 (124)
197 PRK15001 SAM-dependent 23S rib 95.1 0.049 1.1E-06 58.5 6.8 105 160-272 255-371 (378)
198 PF07021 MetW: Methionine bios 95.1 0.0078 1.7E-07 59.1 0.7 121 365-501 7-163 (193)
199 KOG3010 Methyltransferase [Gen 94.9 0.013 2.8E-07 59.5 1.9 114 371-499 31-158 (261)
200 PF06080 DUF938: Protein of un 94.9 0.045 9.8E-07 54.2 5.6 43 192-236 98-143 (204)
201 PRK00811 spermidine synthase; 94.9 0.04 8.8E-07 56.4 5.5 88 145-235 89-192 (283)
202 KOG3045 Predicted RNA methylas 94.8 0.043 9.4E-07 56.5 5.4 108 375-506 182-292 (325)
203 TIGR03587 Pse_Me-ase pseudamin 94.8 0.014 3.1E-07 56.9 1.9 95 374-481 44-142 (204)
204 PF00891 Methyltransf_2: O-met 94.8 0.012 2.6E-07 57.8 1.3 114 352-481 74-199 (241)
205 PRK07580 Mg-protoporphyrin IX 94.8 0.015 3.1E-07 56.2 1.7 99 374-482 64-167 (230)
206 PRK13699 putative methylase; P 94.8 0.066 1.4E-06 53.3 6.4 53 182-234 4-72 (227)
207 PRK14966 unknown domain/N5-glu 94.7 0.074 1.6E-06 58.0 7.1 160 349-521 236-419 (423)
208 PRK13943 protein-L-isoaspartat 94.7 0.035 7.6E-07 58.3 4.6 64 164-234 112-180 (322)
209 TIGR03533 L3_gln_methyl protei 94.7 0.033 7.1E-07 57.1 4.1 123 375-502 123-271 (284)
210 COG2521 Predicted archaeal met 94.6 0.05 1.1E-06 55.3 5.1 86 143-234 145-245 (287)
211 PRK07402 precorrin-6B methylas 94.6 0.1 2.2E-06 49.9 7.1 38 459-496 120-158 (196)
212 TIGR02021 BchM-ChlM magnesium 94.5 0.029 6.2E-07 54.4 3.1 96 374-482 56-159 (219)
213 PRK09328 N5-glutamine S-adenos 94.5 0.085 1.8E-06 52.5 6.5 74 160-234 135-238 (275)
214 KOG2352 Predicted spermine/spe 94.4 0.039 8.5E-07 60.7 4.3 69 164-232 78-159 (482)
215 PRK11805 N5-glutamine S-adenos 94.4 0.11 2.3E-06 54.1 7.1 91 143-235 144-264 (307)
216 PF07942 N2227: N2227-like pro 94.2 0.11 2.5E-06 53.4 6.8 85 182-267 148-244 (270)
217 PF05175 MTS: Methyltransferas 93.9 0.033 7.2E-07 52.4 2.1 113 374-494 32-155 (170)
218 KOG2361 Predicted methyltransf 93.8 0.14 3E-06 52.3 6.4 72 164-235 104-184 (264)
219 PRK00312 pcm protein-L-isoaspa 93.8 0.052 1.1E-06 52.5 3.2 88 374-480 79-174 (212)
220 PF05219 DREV: DREV methyltran 93.8 0.11 2.4E-06 53.4 5.7 70 160-234 119-188 (265)
221 PF11968 DUF3321: Putative met 93.7 0.21 4.6E-06 50.1 7.4 80 184-263 89-179 (219)
222 TIGR03438 probable methyltrans 93.5 0.035 7.6E-07 57.1 1.7 115 356-480 48-176 (301)
223 TIGR00536 hemK_fam HemK family 93.5 0.19 4.1E-06 51.3 7.0 74 161-235 142-245 (284)
224 COG0500 SmtA SAM-dependent met 93.5 0.085 1.8E-06 42.6 3.5 94 377-482 52-156 (257)
225 COG2230 Cfa Cyclopropane fatty 93.4 0.027 5.8E-07 58.4 0.6 125 343-480 42-175 (283)
226 smart00650 rADc Ribosomal RNA 93.4 0.13 2.7E-06 48.2 5.1 124 143-274 24-157 (169)
227 COG2264 PrmA Ribosomal protein 93.2 0.12 2.5E-06 54.1 5.0 68 164-235 192-264 (300)
228 PF02390 Methyltransf_4: Putat 93.2 0.033 7.2E-07 54.2 0.9 124 375-501 19-156 (195)
229 PF05724 TPMT: Thiopurine S-me 93.2 0.15 3.2E-06 50.7 5.4 81 147-231 52-152 (218)
230 PHA03411 putative methyltransf 93.2 0.21 4.5E-06 51.8 6.7 77 160-237 91-188 (279)
231 PRK07402 precorrin-6B methylas 93.2 0.15 3.3E-06 48.7 5.4 67 164-235 71-143 (196)
232 PF02390 Methyltransf_4: Putat 93.1 0.11 2.4E-06 50.5 4.4 82 152-235 41-134 (195)
233 PRK14966 unknown domain/N5-glu 92.8 0.58 1.3E-05 51.1 9.6 93 162-261 280-401 (423)
234 COG0220 Predicted S-adenosylme 92.6 0.31 6.8E-06 49.0 6.7 81 153-235 73-165 (227)
235 PF05219 DREV: DREV methyltran 92.4 0.082 1.8E-06 54.3 2.5 90 373-480 94-187 (265)
236 TIGR00417 speE spermidine synt 92.4 0.17 3.6E-06 51.4 4.6 75 160-235 99-187 (270)
237 KOG1271 Methyltransferases [Ge 92.3 0.32 6.9E-06 48.1 6.2 92 143-235 74-182 (227)
238 TIGR01177 conserved hypothetic 92.3 0.048 1E-06 56.8 0.6 118 375-498 184-309 (329)
239 PRK01581 speE spermidine synth 92.2 0.21 4.5E-06 53.7 5.3 76 159-235 176-269 (374)
240 PRK04457 spermidine synthase; 92.2 0.17 3.6E-06 51.4 4.4 71 163-233 96-176 (262)
241 PRK11783 rlmL 23S rRNA m(2)G24 92.2 0.13 2.8E-06 59.3 3.9 93 143-237 549-659 (702)
242 PF13659 Methyltransf_26: Meth 92.1 0.0093 2E-07 51.3 -4.2 99 376-479 3-113 (117)
243 PF03269 DUF268: Caenorhabditi 92.1 0.099 2.2E-06 50.5 2.4 42 194-235 61-112 (177)
244 COG1352 CheR Methylase of chem 91.9 0.21 4.5E-06 51.5 4.7 43 193-235 199-242 (268)
245 PF01170 UPF0020: Putative RNA 91.7 0.35 7.5E-06 46.3 5.7 72 160-234 64-151 (179)
246 TIGR00417 speE spermidine synt 91.7 0.35 7.7E-06 49.0 6.1 106 369-481 68-186 (270)
247 PLN02781 Probable caffeoyl-CoA 91.7 0.38 8.3E-06 48.0 6.2 67 164-234 100-178 (234)
248 PLN02781 Probable caffeoyl-CoA 91.4 0.099 2.1E-06 52.1 1.7 133 371-521 66-233 (234)
249 COG2264 PrmA Ribosomal protein 91.3 0.35 7.6E-06 50.6 5.7 118 373-506 162-289 (300)
250 TIGR00563 rsmB ribosomal RNA s 91.2 0.14 3.1E-06 55.3 2.8 20 461-480 348-367 (426)
251 COG2227 UbiG 2-polyprenyl-3-me 91.2 0.069 1.5E-06 54.2 0.3 93 376-481 62-161 (243)
252 PF06325 PrmA: Ribosomal prote 91.1 0.23 5E-06 51.7 4.1 93 153-263 185-281 (295)
253 KOG1540 Ubiquinone biosynthesi 91.1 0.18 3.8E-06 52.1 3.1 96 372-481 99-214 (296)
254 PRK00811 spermidine synthase; 91.0 0.34 7.4E-06 49.7 5.2 107 368-480 71-190 (283)
255 PRK13255 thiopurine S-methyltr 91.0 0.14 3E-06 50.7 2.3 95 376-479 40-153 (218)
256 PF01234 NNMT_PNMT_TEMT: NNMT/ 90.9 0.24 5.3E-06 50.6 4.0 39 196-234 158-199 (256)
257 PRK14902 16S rRNA methyltransf 90.9 0.54 1.2E-05 51.0 6.8 104 375-481 252-379 (444)
258 COG1092 Predicted SAM-dependen 90.7 0.35 7.6E-06 52.4 5.2 94 143-239 228-341 (393)
259 PLN02366 spermidine synthase 90.5 0.94 2E-05 47.4 8.0 70 164-234 122-206 (308)
260 PRK11524 putative methyltransf 90.2 0.18 3.9E-06 51.5 2.3 55 181-235 10-81 (284)
261 PRK03612 spermidine synthase; 90.0 0.91 2E-05 50.6 7.8 74 161-235 325-416 (521)
262 PF13649 Methyltransf_25: Meth 89.9 0.011 2.4E-07 50.3 -5.8 92 377-475 1-101 (101)
263 COG2813 RsmC 16S RNA G1207 met 89.7 1.9 4.1E-05 45.3 9.3 120 144-272 170-297 (300)
264 PLN03075 nicotianamine synthas 89.7 0.3 6.6E-06 51.0 3.6 140 373-522 123-276 (296)
265 PF05891 Methyltransf_PK: AdoM 89.2 0.57 1.2E-05 47.0 4.9 86 147-234 70-161 (218)
266 COG4123 Predicted O-methyltran 88.8 0.81 1.8E-05 46.8 5.7 128 372-501 43-190 (248)
267 PF05185 PRMT5: PRMT5 arginine 88.3 0.37 8E-06 52.9 3.2 129 341-480 150-296 (448)
268 PF08003 Methyltransf_9: Prote 88.2 0.39 8.6E-06 50.5 3.2 97 373-480 115-218 (315)
269 PRK14901 16S rRNA methyltransf 88.2 0.77 1.7E-05 49.8 5.5 39 461-499 364-407 (434)
270 TIGR03840 TMPT_Se_Te thiopurin 88.1 0.21 4.6E-06 49.3 1.1 30 375-404 36-67 (213)
271 PHA03412 putative methyltransf 87.7 1.6 3.5E-05 44.5 7.0 72 159-232 78-160 (241)
272 COG2519 GCD14 tRNA(1-methylade 87.6 1.6 3.5E-05 44.8 7.0 83 143-237 105-198 (256)
273 PF10294 Methyltransf_16: Puta 86.9 0.22 4.9E-06 47.3 0.4 122 350-481 17-156 (173)
274 PRK13168 rumA 23S rRNA m(5)U19 86.9 1.2 2.5E-05 48.5 5.9 89 143-239 308-405 (443)
275 PRK11933 yebU rRNA (cytosine-C 86.8 2.5 5.5E-05 46.8 8.5 80 164-243 145-251 (470)
276 PRK11783 rlmL 23S rRNA m(2)G24 86.6 0.22 4.7E-06 57.4 0.2 128 375-504 540-679 (702)
277 KOG3201 Uncharacterized conser 86.6 0.51 1.1E-05 45.9 2.6 89 146-235 43-141 (201)
278 PRK15128 23S rRNA m(5)C1962 me 86.4 1.4 3E-05 47.7 6.1 89 143-235 231-340 (396)
279 PF01135 PCMT: Protein-L-isoas 86.2 1.4 2.9E-05 43.7 5.5 65 164-235 104-173 (209)
280 PF06859 Bin3: Bicoid-interact 85.9 0.27 5.8E-06 44.5 0.3 39 197-235 2-45 (110)
281 COG4798 Predicted methyltransf 85.6 1.8 4E-05 43.3 6.0 98 135-235 55-167 (238)
282 PRK10901 16S rRNA methyltransf 85.6 0.65 1.4E-05 50.2 3.2 104 375-481 246-372 (427)
283 PRK01581 speE spermidine synth 85.5 0.94 2E-05 48.9 4.3 148 369-523 146-316 (374)
284 KOG4300 Predicted methyltransf 85.5 1 2.3E-05 45.4 4.3 115 352-482 51-183 (252)
285 TIGR00446 nop2p NOL1/NOP2/sun 85.4 0.66 1.4E-05 47.0 2.9 20 462-481 180-199 (264)
286 COG4122 Predicted O-methyltran 85.3 1.1 2.4E-05 44.9 4.5 66 164-233 91-165 (219)
287 TIGR03704 PrmC_rel_meth putati 85.2 3.7 8.1E-05 41.4 8.2 73 163-235 116-217 (251)
288 COG2813 RsmC 16S RNA G1207 met 85.1 3.4 7.3E-05 43.5 8.0 126 376-520 161-299 (300)
289 KOG1271 Methyltransferases [Ge 85.1 1.2 2.6E-05 44.2 4.4 109 376-492 70-192 (227)
290 COG0144 Sun tRNA and rRNA cyto 84.0 3.5 7.6E-05 43.9 7.8 99 143-244 171-298 (355)
291 PLN02232 ubiquinone biosynthes 83.9 0.39 8.4E-06 44.9 0.5 46 427-481 36-81 (160)
292 PRK13943 protein-L-isoaspartat 83.3 0.35 7.7E-06 50.9 -0.0 19 375-393 82-100 (322)
293 PRK03612 spermidine synthase; 83.0 0.74 1.6E-05 51.3 2.3 124 372-500 296-439 (521)
294 PRK13168 rumA 23S rRNA m(5)U19 82.9 4.1 8.9E-05 44.3 7.9 129 375-520 299-442 (443)
295 TIGR00478 tly hemolysin TlyA f 81.7 0.4 8.6E-06 48.2 -0.4 23 374-396 76-98 (228)
296 COG3963 Phospholipid N-methylt 81.7 1.7 3.6E-05 42.6 3.8 92 143-234 59-156 (194)
297 PLN02823 spermine synthase 81.5 5 0.00011 42.6 7.7 71 163-234 133-220 (336)
298 COG4123 Predicted O-methyltran 81.5 2.9 6.3E-05 42.8 5.7 90 164-260 75-189 (248)
299 PF10672 Methyltrans_SAM: S-ad 81.1 0.91 2E-05 47.2 2.0 90 143-235 134-239 (286)
300 PLN02366 spermidine synthase 80.6 0.74 1.6E-05 48.2 1.1 105 371-481 89-206 (308)
301 PLN02585 magnesium protoporphy 80.6 0.74 1.6E-05 48.3 1.1 72 375-449 146-226 (315)
302 PRK03522 rumB 23S rRNA methylu 79.7 4.5 9.8E-05 42.0 6.6 90 143-239 184-279 (315)
303 KOG2899 Predicted methyltransf 79.1 2.8 6.1E-05 43.2 4.7 45 190-234 160-209 (288)
304 PRK14904 16S rRNA methyltransf 79.0 2.3 5.1E-05 46.3 4.4 20 462-481 358-377 (445)
305 PF12147 Methyltransf_20: Puta 78.1 4.3 9.4E-05 42.7 5.8 96 141-236 141-251 (311)
306 PRK14903 16S rRNA methyltransf 77.6 1.2 2.6E-05 48.5 1.7 102 375-481 239-366 (431)
307 KOG3178 Hydroxyindole-O-methyl 77.4 3 6.5E-05 44.5 4.5 44 188-235 232-276 (342)
308 TIGR00479 rumA 23S rRNA (uraci 76.7 5 0.00011 43.3 6.1 88 143-237 303-399 (431)
309 COG0220 Predicted S-adenosylme 76.5 2.1 4.6E-05 43.0 3.0 117 375-495 50-180 (227)
310 TIGR00479 rumA 23S rRNA (uraci 76.3 3 6.6E-05 45.0 4.3 112 375-501 294-416 (431)
311 PLN02476 O-methyltransferase 75.8 2.3 4.9E-05 44.2 3.0 134 370-521 115-278 (278)
312 KOG1541 Predicted protein carb 74.2 19 0.00042 36.9 8.9 119 369-494 46-176 (270)
313 PF01555 N6_N4_Mtase: DNA meth 72.7 3.5 7.7E-05 38.9 3.3 24 213-236 35-58 (231)
314 PHA03411 putative methyltransf 72.4 2 4.3E-05 44.7 1.6 101 375-480 66-182 (279)
315 KOG2904 Predicted methyltransf 72.0 24 0.00052 37.3 9.2 164 349-520 128-327 (328)
316 PRK15128 23S rRNA m(5)C1962 me 70.6 2.6 5.7E-05 45.6 2.1 44 460-503 318-367 (396)
317 COG1064 AdhP Zn-dependent alco 68.9 7.2 0.00016 41.7 4.9 83 143-236 178-261 (339)
318 PLN02476 O-methyltransferase 68.0 6.3 0.00014 41.0 4.1 66 164-233 150-227 (278)
319 KOG1661 Protein-L-isoaspartate 67.6 12 0.00026 38.0 5.8 48 181-235 147-194 (237)
320 PF02527 GidB: rRNA small subu 65.9 11 0.00023 36.8 5.1 138 349-503 26-173 (184)
321 COG2242 CobL Precorrin-6B meth 65.6 32 0.0007 34.0 8.3 78 152-235 56-136 (187)
322 PF01596 Methyltransf_3: O-met 65.3 1.1 2.5E-05 44.1 -1.8 134 370-521 42-205 (205)
323 TIGR00478 tly hemolysin TlyA f 65.0 7.4 0.00016 39.2 3.9 81 143-235 86-172 (228)
324 PF05891 Methyltransf_PK: AdoM 64.7 2.1 4.5E-05 43.1 -0.1 124 373-505 55-201 (218)
325 PF08704 GCD14: tRNA methyltra 64.5 11 0.00023 38.6 4.9 67 164-236 72-148 (247)
326 COG4106 Tam Trans-aconitate me 64.2 5.8 0.00012 40.5 2.9 120 368-503 25-155 (257)
327 PRK00536 speE spermidine synth 63.4 8.6 0.00019 39.6 4.1 67 159-234 96-171 (262)
328 KOG1122 tRNA and rRNA cytosine 62.8 23 0.00051 39.1 7.3 92 147-243 260-380 (460)
329 COG2518 Pcm Protein-L-isoaspar 62.6 15 0.00032 36.9 5.4 63 164-234 101-169 (209)
330 PRK11933 yebU rRNA (cytosine-C 61.4 5.3 0.00012 44.3 2.3 106 376-481 116-242 (470)
331 PF11899 DUF3419: Protein of u 60.7 18 0.0004 39.1 6.1 42 192-234 291-334 (380)
332 PF10294 Methyltransf_16: Puta 60.1 9.4 0.0002 36.3 3.5 43 193-236 116-158 (173)
333 KOG2798 Putative trehalase [Ca 59.9 15 0.00032 39.4 5.0 70 194-264 257-336 (369)
334 PF07629 DUF1590: Protein of u 58.6 5.3 0.00011 28.2 1.1 19 111-129 5-23 (32)
335 TIGR02085 meth_trns_rumB 23S r 58.2 25 0.00054 37.6 6.6 89 143-238 244-338 (374)
336 KOG1709 Guanidinoacetate methy 57.6 8.1 0.00018 39.4 2.6 42 192-234 165-206 (271)
337 PRK10909 rsmD 16S rRNA m(2)G96 56.8 21 0.00045 35.1 5.3 88 143-235 64-160 (199)
338 PRK04148 hypothetical protein; 56.7 8.3 0.00018 36.0 2.4 92 375-506 18-111 (134)
339 PRK03522 rumB 23S rRNA methylu 55.8 15 0.00033 38.1 4.4 127 375-520 175-314 (315)
340 PF13679 Methyltransf_32: Meth 55.7 11 0.00023 34.5 2.9 38 356-393 4-45 (141)
341 KOG1663 O-methyltransferase [S 53.3 13 0.00029 37.9 3.4 38 192-233 145-182 (237)
342 PLN02668 indole-3-acetate carb 52.7 15 0.00033 40.0 3.9 20 191-211 157-176 (386)
343 PF02527 GidB: rRNA small subu 52.6 22 0.00048 34.6 4.7 55 174-234 93-148 (184)
344 PF10354 DUF2431: Domain of un 50.8 81 0.0017 30.2 8.1 85 170-261 46-148 (166)
345 TIGR00755 ksgA dimethyladenosi 50.5 13 0.00029 37.1 2.9 26 373-398 29-54 (253)
346 smart00650 rADc Ribosomal RNA 49.6 16 0.00035 34.1 3.1 21 375-395 15-35 (169)
347 COG2890 HemK Methylase of poly 48.3 35 0.00075 35.3 5.6 90 159-257 136-254 (280)
348 PRK00274 ksgA 16S ribosomal RN 48.2 12 0.00025 38.2 2.1 21 375-395 44-64 (272)
349 TIGR02085 meth_trns_rumB 23S r 48.0 18 0.00039 38.7 3.5 126 375-518 235-372 (374)
350 PLN02823 spermine synthase 47.5 33 0.00071 36.6 5.4 98 369-480 99-219 (336)
351 PRK13699 putative methylase; P 47.5 18 0.0004 36.1 3.3 20 461-480 52-71 (227)
352 PF02475 Met_10: Met-10+ like- 46.9 14 0.00031 36.4 2.4 45 346-399 83-129 (200)
353 PRK14896 ksgA 16S ribosomal RN 46.5 19 0.00041 36.3 3.3 23 374-396 30-52 (258)
354 KOG3115 Methyltransferase-like 46.1 9 0.00019 38.8 0.9 23 462-484 164-186 (249)
355 PRK10611 chemotaxis methyltran 45.9 5.1 0.00011 41.7 -0.9 45 433-484 221-265 (287)
356 COG4627 Uncharacterized protei 44.6 3.9 8.5E-05 39.7 -1.8 41 433-480 45-85 (185)
357 COG4122 Predicted O-methyltran 43.5 9.9 0.00021 38.3 0.7 142 359-521 48-218 (219)
358 KOG2361 Predicted methyltransf 42.9 6.6 0.00014 40.4 -0.6 142 326-481 27-183 (264)
359 COG2521 Predicted archaeal met 42.8 11 0.00024 39.0 0.9 154 335-503 102-275 (287)
360 COG0421 SpeE Spermidine syntha 42.4 39 0.00085 35.2 4.9 70 164-235 107-191 (282)
361 PF06962 rRNA_methylase: Putat 42.1 1E+02 0.0022 29.1 7.2 90 164-257 6-114 (140)
362 PRK14896 ksgA 16S ribosomal RN 41.9 32 0.00069 34.7 4.1 58 143-205 40-100 (258)
363 PF01739 CheR: CheR methyltran 41.3 5.6 0.00012 39.1 -1.4 54 423-484 125-178 (196)
364 COG0421 SpeE Spermidine syntha 41.1 14 0.00031 38.4 1.5 124 367-498 70-212 (282)
365 KOG1270 Methyltransferases [Co 40.6 12 0.00025 39.1 0.7 93 375-482 91-196 (282)
366 PRK00274 ksgA 16S ribosomal RN 40.0 24 0.00052 35.9 2.9 58 143-203 53-112 (272)
367 TIGR03439 methyl_EasF probable 39.8 59 0.0013 34.5 5.8 76 159-234 106-197 (319)
368 PF13334 DUF4094: Domain of un 39.6 19 0.00041 31.8 1.8 19 23-41 4-22 (95)
369 PF06080 DUF938: Protein of un 39.4 19 0.00041 36.0 2.0 131 376-520 28-204 (204)
370 KOG2539 Mitochondrial/chloropl 39.0 62 0.0013 36.3 5.9 73 163-235 232-316 (491)
371 PRK04338 N(2),N(2)-dimethylgua 37.2 32 0.0007 37.1 3.5 86 143-235 68-159 (382)
372 PF00107 ADH_zinc_N: Zinc-bind 36.5 44 0.00095 29.0 3.6 73 153-235 13-90 (130)
373 PLN02672 methionine S-methyltr 36.0 1.4E+02 0.003 37.0 8.7 48 215-275 259-307 (1082)
374 TIGR00755 ksgA dimethyladenosi 35.9 65 0.0014 32.2 5.2 57 143-204 40-102 (253)
375 PRK00536 speE spermidine synth 35.6 56 0.0012 33.8 4.7 94 367-481 66-171 (262)
376 PF01564 Spermine_synth: Sperm 35.5 30 0.00065 35.0 2.7 71 164-235 107-192 (246)
377 cd08230 glucose_DH Glucose deh 35.2 65 0.0014 33.3 5.2 85 143-235 184-270 (355)
378 PF01269 Fibrillarin: Fibrilla 35.1 58 0.0012 33.3 4.6 75 155-235 101-179 (229)
379 PF14881 Tubulin_3: Tubulin do 34.6 31 0.00067 33.5 2.6 34 372-405 75-117 (180)
380 COG5459 Predicted rRNA methyla 34.6 47 0.001 36.3 4.1 60 188-252 176-238 (484)
381 PF03059 NAS: Nicotianamine sy 34.4 75 0.0016 33.1 5.5 71 164-235 153-231 (276)
382 PF01269 Fibrillarin: Fibrilla 34.3 46 0.001 33.9 3.8 94 376-480 76-177 (229)
383 PF07942 N2227: N2227-like pro 33.9 25 0.00054 36.5 1.9 44 460-503 181-240 (270)
384 cd08254 hydroxyacyl_CoA_DH 6-h 33.1 76 0.0016 31.7 5.2 36 193-235 229-264 (338)
385 PRK10909 rsmD 16S rRNA m(2)G96 32.3 34 0.00073 33.6 2.4 120 347-483 33-161 (199)
386 PLN02589 caffeoyl-CoA O-methyl 32.1 46 0.00099 34.0 3.4 64 166-233 113-189 (247)
387 PF01861 DUF43: Protein of unk 31.8 3.8E+02 0.0082 27.7 9.8 135 152-306 67-214 (243)
388 PF01564 Spermine_synth: Sperm 31.5 45 0.00097 33.7 3.2 144 371-522 74-239 (246)
389 TIGR01444 fkbM_fam methyltrans 31.0 18 0.00039 32.1 0.3 30 376-405 1-32 (143)
390 PHA03412 putative methyltransf 30.9 20 0.00044 36.6 0.7 98 376-479 52-160 (241)
391 PF01596 Methyltransf_3: O-met 30.8 28 0.0006 34.4 1.6 66 165-234 78-155 (205)
392 COG0116 Predicted N6-adenine-s 30.6 1.3E+02 0.0029 32.9 6.7 73 160-235 257-345 (381)
393 PLN02668 indole-3-acetate carb 30.0 64 0.0014 35.3 4.3 71 373-449 63-175 (386)
394 COG2263 Predicted RNA methylas 29.2 27 0.00058 34.8 1.2 27 375-401 47-76 (198)
395 PF01555 N6_N4_Mtase: DNA meth 29.1 12 0.00026 35.3 -1.3 63 460-522 35-112 (231)
396 TIGR00308 TRM1 tRNA(guanine-26 28.7 66 0.0014 34.8 4.1 86 143-235 55-148 (374)
397 KOG2940 Predicted methyltransf 28.5 16 0.00035 37.7 -0.5 99 373-480 72-173 (325)
398 COG0357 GidB Predicted S-adeno 28.4 2.1E+02 0.0046 28.8 7.3 140 347-504 43-194 (215)
399 COG1189 Predicted rRNA methyla 28.3 57 0.0012 33.6 3.3 113 374-503 80-222 (245)
400 TIGR02143 trmA_only tRNA (urac 28.2 73 0.0016 33.9 4.3 51 468-520 298-352 (353)
401 COG1889 NOP1 Fibrillarin-like 27.5 2.1E+02 0.0046 29.2 7.0 132 376-521 79-229 (231)
402 PF06962 rRNA_methylase: Putat 26.6 66 0.0014 30.4 3.2 52 469-520 80-140 (140)
403 PF02475 Met_10: Met-10+ like- 26.6 68 0.0015 31.7 3.5 82 143-231 112-199 (200)
404 cd06060 misato Human Misato sh 25.9 52 0.0011 37.0 2.8 33 372-404 152-192 (493)
405 KOG3987 Uncharacterized conser 25.1 32 0.0007 35.1 0.9 66 164-234 141-207 (288)
406 PRK00050 16S rRNA m(4)C1402 me 25.0 51 0.0011 34.7 2.4 19 376-394 22-40 (296)
407 KOG1099 SAM-dependent methyltr 24.9 61 0.0013 33.6 2.8 38 195-232 114-161 (294)
408 COG0863 DNA modification methy 24.9 1.7E+02 0.0038 29.2 6.1 50 215-275 80-129 (302)
409 PF02384 N6_Mtase: N-6 DNA Met 23.7 43 0.00093 34.2 1.5 24 370-393 43-66 (311)
410 PRK09880 L-idonate 5-dehydroge 23.5 1.5E+02 0.0033 30.5 5.5 65 164-235 201-267 (343)
411 PF01728 FtsJ: FtsJ-like methy 23.4 39 0.00085 31.6 1.1 39 195-234 90-139 (181)
412 PRK11727 23S rRNA mA1618 methy 23.1 54 0.0012 34.8 2.2 29 371-399 112-141 (321)
413 KOG1499 Protein arginine N-met 23.1 58 0.0012 35.2 2.4 29 357-385 44-72 (346)
414 PF01135 PCMT: Protein-L-isoas 21.6 85 0.0018 31.1 3.1 98 360-479 63-170 (209)
415 PF13578 Methyltransf_24: Meth 21.4 47 0.001 28.2 1.1 52 180-233 51-104 (106)
416 PRK11524 putative methyltransf 20.6 99 0.0021 31.7 3.4 29 461-489 60-88 (284)
417 CHL00125 psaE photosystem I su 20.5 46 0.001 27.5 0.8 11 469-479 9-19 (64)
418 TIGR00095 RNA methyltransferas 20.4 2.4E+02 0.0052 27.2 5.9 87 143-232 60-157 (189)
419 PF10237 N6-adenineMlase: Prob 20.4 2.3E+02 0.0049 27.3 5.6 39 194-235 84-124 (162)
420 PF03269 DUF268: Caenorhabditi 20.3 60 0.0013 31.8 1.7 70 431-501 59-143 (177)
421 KOG1709 Guanidinoacetate methy 20.3 47 0.001 34.1 1.0 64 372-441 100-188 (271)
422 cd08283 FDH_like_1 Glutathione 20.2 2.4E+02 0.0053 29.6 6.4 21 215-235 287-307 (386)
423 PRK02749 photosystem I reactio 20.1 47 0.001 27.9 0.8 12 468-479 9-20 (71)
No 1
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=100.00 E-value=3.3e-157 Score=1243.01 Aligned_cols=427 Identities=52% Similarity=1.016 Sum_probs=414.6
Q ss_pred CCCCCCChhHhhhc--cccchhhhhcCCCCCCCCCccccCCCCCCCCCCCCCccchh-----------------------
Q 009719 88 DHMPCEDPRRNSQL--SREMNFYRERHCPLPDQTPLCLIPPPRGYKIPVPWPESLSK----------------------- 142 (527)
Q Consensus 88 ~y~PC~d~~~~~~~--~~~~~~~reRhCp~~~~~~~Clvp~P~gY~~P~~WP~Srd~----------------------- 142 (527)
|||||+|+.+++++ ++++++|||||||+.+++++||||+|+|||+|||||+|||+
T Consensus 1 dy~PC~D~~~~~~~~~~~~~~~~rERhCP~~~~~~~CLVp~P~gYk~P~~WP~SRd~iW~~Nvph~~L~~~K~~qnWv~~ 80 (506)
T PF03141_consen 1 DYIPCLDNSRAIKFLLSRERMEHRERHCPPPEERLRCLVPPPKGYKTPIPWPKSRDYIWYANVPHTKLAEEKADQNWVRV 80 (506)
T ss_pred CCcCCCCHHHHHhhccCcccccEeeccCcCCCCCCccccCCCccCCCCCCCCcccceeeecccCchHHhhhcccccceee
Confidence 79999999999999 99999999999999999999999999999999999999999
Q ss_pred -----------------------------------------------hhccccccccCCeeEEeeccCcChHHHHHHHHH
Q 009719 143 -----------------------------------------------VASFGGSMLSENILTLSFAPRDSHKAQIQFALE 175 (527)
Q Consensus 143 -----------------------------------------------vgsfga~Ll~r~V~~msiAp~D~seaqvq~A~e 175 (527)
+|||||+|+++||++|++||.|.|++|+|||+|
T Consensus 81 ~gd~~~FPgggt~F~~Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfale 160 (506)
T PF03141_consen 81 EGDKFRFPGGGTMFPHGADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALE 160 (506)
T ss_pred cCCEEEeCCCCccccCCHHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhh
Confidence 899999999999999999999999999999999
Q ss_pred cCCCcEEeeccccCCCCCCCcccEEEecCcccccccChHHHHHHHhhcccCCcEEEEecCCCCCCCc---hhHHHHHHHH
Q 009719 176 RGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQ---DKEWADLQAV 252 (527)
Q Consensus 176 Rg~pa~~~v~dae~LPFpD~SFDlV~cs~~l~hw~d~~~~aL~Ei~RVLRPGG~lviS~pp~~~~~~---~~~w~~i~~l 252 (527)
||+|+++.+.++++||||+++||+|||++|+++|...++.+|.|++|||||||||++|+||+|.... ..+|+.|+++
T Consensus 161 RGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~~r~~~~~~~~~~~~~~l 240 (506)
T PF03141_consen 161 RGVPAMIGVLGSQRLPFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVYQRTDEDLEEEWNAMEDL 240 (506)
T ss_pred cCcchhhhhhccccccCCccchhhhhcccccccchhcccceeehhhhhhccCceEEecCCcccccchHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999889999999999999999999999994333 3479999999
Q ss_pred HHhcceEEeeeecceEEEeCCCccccccccC-CCCCCCCCCCCCCCcccccccccccccccCCCccccCCCCCCCCcccc
Q 009719 253 ARALCYELIAVDGNTVIWKKPVGESCLSNQN-EFGLELCDESDDPNYAWYFKLKKCVSGTSSVKGEYAVGTIPKWPQRLT 331 (527)
Q Consensus 253 ~~~mcW~~~~~~~~v~iwrKp~~~~c~~~~~-~~~p~~C~~~~d~d~~wy~~~~~Ci~~~~~~~~~~~~~~~~~wP~Rl~ 331 (527)
|++|||++++++++++|||||.+++||.+|+ .+.||+|++++|||++||++|++||||+|++.++.+++++++||+||+
T Consensus 241 ~~~lCW~~va~~~~~aIwqKp~~~~Cy~~r~~~~~pplC~~~~dpd~aWY~~l~~Cit~~p~~~~~~~~~~~~~WP~RL~ 320 (506)
T PF03141_consen 241 AKSLCWKKVAEKGDTAIWQKPTNNSCYQKRKPGKSPPLCDSSDDPDAAWYVPLEACITPLPEVSSEIAGGWLPKWPERLN 320 (506)
T ss_pred HHHHHHHHheeeCCEEEEeccCCchhhhhccCCCCCCCCCCCCCCcchhhcchhhhcCcCCcccccccccCCCCChhhhc
Confidence 9999999999999999999999999999965 499999999999999999999999999999988999999999999999
Q ss_pred CCCccccc---cccCccccchhhHHHHHHHHHHHHHhhhccCCCCeeeEeecCCCccchhhhccCCCeeEEEecCCCCCC
Q 009719 332 KAPSRALV---MKNGYDVFEADSRRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKSS 408 (527)
Q Consensus 332 ~~p~rl~~---~g~~~~~f~~d~~~W~~~v~~Y~~~l~~~i~~~~iRnvmDm~ag~GgFaAaL~~~~VwvMnvvp~~~~n 408 (527)
++|+||.. .|+++|.|++|+++|+++|++|+++++..+++++||||||||||||||||||+++|||||||||+.++|
T Consensus 321 ~~P~rl~~~~~~g~~~e~F~~Dt~~Wk~~V~~Y~~l~~~~i~~~~iRNVMDMnAg~GGFAAAL~~~~VWVMNVVP~~~~n 400 (506)
T PF03141_consen 321 AVPPRLSSGSIPGISPEEFKEDTKHWKKRVSHYKKLLGLAIKWGRIRNVMDMNAGYGGFAAALIDDPVWVMNVVPVSGPN 400 (506)
T ss_pred cCchhhhcCCcCCCCHHHHHHHHHHHHHHHHHHHHhhcccccccceeeeeeecccccHHHHHhccCCceEEEecccCCCC
Confidence 99999964 899999999999999999999999888789999999999999999999999999999999999999999
Q ss_pred chhHhhhccccccccccCCCCCCCCCccchhhhcCccccccCCCCCCCCCcccccceeecccccCCcEEEEeCCHHHHHH
Q 009719 409 TLSVIYDRGLIGVYHDWCEPFSTYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSPEVIDK 488 (527)
Q Consensus 409 tl~vi~eRGLiG~~hdwce~fstYPrtyDLiHa~~~fs~~~~~~~~~~rC~~~~illEmDRILRP~G~~iird~~~~~~~ 488 (527)
||++||||||||+||||||+|||||||||||||+++||.|+ +||+|++|||||||||||||++||||+.+++++
T Consensus 401 tL~vIydRGLIG~yhDWCE~fsTYPRTYDLlHA~~lfs~~~------~rC~~~~illEmDRILRP~G~~iiRD~~~vl~~ 474 (506)
T PF03141_consen 401 TLPVIYDRGLIGVYHDWCEAFSTYPRTYDLLHADGLFSLYK------DRCEMEDILLEMDRILRPGGWVIIRDTVDVLEK 474 (506)
T ss_pred cchhhhhcccchhccchhhccCCCCcchhheehhhhhhhhc------ccccHHHHHHHhHhhcCCCceEEEeccHHHHHH
Confidence 99999999999999999999999999999999999999997 899999999999999999999999999999999
Q ss_pred HHHHHhcCCceeEEecCCCCCCCCceEEEEEe
Q 009719 489 VSRIANTVRWTAAVHDKEPGSNGREKILVATK 520 (527)
Q Consensus 489 i~~i~~~l~W~~~~~~~e~~~~~~ekiLi~~K 520 (527)
|++|+++|||+++++|+|+|++++||||||||
T Consensus 475 v~~i~~~lrW~~~~~d~e~g~~~~EkiL~~~K 506 (506)
T PF03141_consen 475 VKKIAKSLRWEVRIHDTEDGPDGPEKILICQK 506 (506)
T ss_pred HHHHHHhCcceEEEEecCCCCCCCceEEEEEC
Confidence 99999999999999999999999999999998
No 2
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=100.00 E-value=2.8e-35 Score=313.61 Aligned_cols=197 Identities=20% Similarity=0.316 Sum_probs=162.3
Q ss_pred ccccccccccCCCccccCCCCCCCCcccc-----CCCcc-ccc-cc------cCcc--ccchhhHHHHHHHHHHHHHhhh
Q 009719 303 KLKKCVSGTSSVKGEYAVGTIPKWPQRLT-----KAPSR-ALV-MK------NGYD--VFEADSRRWRRRVAYYKNTLNV 367 (527)
Q Consensus 303 ~~~~Ci~~~~~~~~~~~~~~~~~wP~Rl~-----~~p~r-l~~-~g------~~~~--~f~~d~~~W~~~v~~Y~~~l~~ 367 (527)
....|+.|+|.+. ..+.+||+... ++|.. |+. ++ +..+ .|......++++|++|++.|.+
T Consensus 33 ~~~~CLVp~P~gY-----k~P~~WP~SRd~iW~~Nvph~~L~~~K~~qnWv~~~gd~~~FPgggt~F~~Ga~~Yid~i~~ 107 (506)
T PF03141_consen 33 ERLRCLVPPPKGY-----KTPIPWPKSRDYIWYANVPHTKLAEEKADQNWVRVEGDKFRFPGGGTMFPHGADHYIDQIAE 107 (506)
T ss_pred CCCccccCCCccC-----CCCCCCCcccceeeecccCchHHhhhcccccceeecCCEEEeCCCCccccCCHHHHHHHHHH
Confidence 4568999999754 57899999983 34433 532 22 2222 3889999999999999988887
Q ss_pred cc----CCCCeeeEeecCCCccchhhhccCCCeeEEEecCCCCC-CchhHhhhccc---cccccccCCCCCCCCCccchh
Q 009719 368 KL----GTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGL---IGVYHDWCEPFSTYPRTYDLI 439 (527)
Q Consensus 368 ~i----~~~~iRnvmDm~ag~GgFaAaL~~~~VwvMnvvp~~~~-ntl~vi~eRGL---iG~~hdwce~fstYPrtyDLi 439 (527)
.+ ..++||++||+|||+|+|||+|.+++|.+|+++|.+.+ +++||++|||+ ||++.+-..|| +.|+|||+
T Consensus 108 ~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleRGvpa~~~~~~s~rLPf--p~~~fDmv 185 (506)
T PF03141_consen 108 MIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALERGVPAMIGVLGSQRLPF--PSNAFDMV 185 (506)
T ss_pred HhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhcCcchhhhhhccccccC--Cccchhhh
Confidence 65 45899999999999999999999999999999999988 99999999997 55555555544 34999999
Q ss_pred hhcCccccccCCCCCCCCCcccccceeecccccCCcEEEEeCC----------HHHHHHHHHHHhcCCceeEEecCCCCC
Q 009719 440 HVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS----------PEVIDKVSRIANTVRWTAAVHDKEPGS 509 (527)
Q Consensus 440 Ha~~~fs~~~~~~~~~~rC~~~~illEmDRILRP~G~~iird~----------~~~~~~i~~i~~~l~W~~~~~~~e~~~ 509 (527)
||++|.+.|. ..+ +.+|+|+|||||||||||++.. .+++++|++++++|||+....
T Consensus 186 Hcsrc~i~W~----~~~----g~~l~evdRvLRpGGyfv~S~ppv~~r~~~~~~~~~~~~~~l~~~lCW~~va~------ 251 (506)
T PF03141_consen 186 HCSRCLIPWH----PND----GFLLFEVDRVLRPGGYFVLSGPPVYQRTDEDLEEEWNAMEDLAKSLCWKKVAE------ 251 (506)
T ss_pred hcccccccch----hcc----cceeehhhhhhccCceEEecCCcccccchHHHHHHHHHHHHHHHHHHHHHhee------
Confidence 9999999997 223 6799999999999999999852 468999999999999999886
Q ss_pred CCCceEEEEEecc
Q 009719 510 NGREKILVATKSL 522 (527)
Q Consensus 510 ~~~ekiLi~~K~~ 522 (527)
+..+.|+||+.
T Consensus 252 --~~~~aIwqKp~ 262 (506)
T PF03141_consen 252 --KGDTAIWQKPT 262 (506)
T ss_pred --eCCEEEEeccC
Confidence 34599999974
No 3
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.41 E-value=1.4e-13 Score=137.24 Aligned_cols=77 Identities=30% Similarity=0.335 Sum_probs=67.3
Q ss_pred EEeeccCcChHHHHHHHHHcCCC-----cEEeeccccCCCCCCCcccEEEecCcccccccChHHHHHHHhhcccCCcEEE
Q 009719 157 TLSFAPRDSHKAQIQFALERGIP-----AFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLV 231 (527)
Q Consensus 157 ~msiAp~D~seaqvq~A~eRg~p-----a~~~v~dae~LPFpD~SFDlV~cs~~l~hw~d~~~~aL~Ei~RVLRPGG~lv 231 (527)
.-.+...|.++.|+..|++|... ..+.++|++.|||+|+|||+|.|++.|+++++.+. +|+|+.|||||||+++
T Consensus 75 ~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fglrnv~d~~~-aL~E~~RVlKpgG~~~ 153 (238)
T COG2226 75 TGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGLRNVTDIDK-ALKEMYRVLKPGGRLL 153 (238)
T ss_pred CceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeehhhcCCCHHH-HHHHHHHhhcCCeEEE
Confidence 44556668899999999988543 56789999999999999999999999999998877 9999999999999998
Q ss_pred Eec
Q 009719 232 ISG 234 (527)
Q Consensus 232 iS~ 234 (527)
+-.
T Consensus 154 vle 156 (238)
T COG2226 154 VLE 156 (238)
T ss_pred EEE
Confidence 743
No 4
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.35 E-value=6.6e-13 Score=108.73 Aligned_cols=85 Identities=27% Similarity=0.370 Sum_probs=65.2
Q ss_pred hccccccccC-CeeEEeeccCcChHHHHHHHHHcCCC--cEEeeccccCCCCCCCcccEEEecCcccccccChHHHHHHH
Q 009719 144 ASFGGSMLSE-NILTLSFAPRDSHKAQIQFALERGIP--AFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEV 220 (527)
Q Consensus 144 gsfga~Ll~r-~V~~msiAp~D~seaqvq~A~eRg~p--a~~~v~dae~LPFpD~SFDlV~cs~~l~hw~d~~~~aL~Ei 220 (527)
|.++..|.++ +... ...|.++++++.|+++... ..+..++.+.|||+++|||+|+|..+++|+.+ ...+++|+
T Consensus 8 G~~~~~l~~~~~~~v---~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~~-~~~~l~e~ 83 (95)
T PF08241_consen 8 GRFAAALAKRGGASV---TGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLED-PEAALREI 83 (95)
T ss_dssp SHHHHHHHHTTTCEE---EEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGSSH-HHHHHHHH
T ss_pred CHHHHHHHhccCCEE---EEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeeccC-HHHHHHHH
Confidence 4455566666 5543 3448889999999988643 34778899999999999999999999988844 44599999
Q ss_pred hhcccCCcEEEE
Q 009719 221 DRLLRPGGYLVI 232 (527)
Q Consensus 221 ~RVLRPGG~lvi 232 (527)
.|||||||++++
T Consensus 84 ~rvLk~gG~l~~ 95 (95)
T PF08241_consen 84 YRVLKPGGRLVI 95 (95)
T ss_dssp HHHEEEEEEEEE
T ss_pred HHHcCcCeEEeC
Confidence 999999999986
No 5
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.35 E-value=1e-12 Score=140.94 Aligned_cols=90 Identities=13% Similarity=0.157 Sum_probs=64.6
Q ss_pred hhccccccccCCeeEEeeccCcChHHHHHHHHHcC--C-CcEEeecccc--CCCCCCCcccEEEecCcccccccCh-HHH
Q 009719 143 VASFGGSMLSENILTLSFAPRDSHKAQIQFALERG--I-PAFVAMLGTR--RLPFPAFSFDIVHCSRCLIPFTAYN-ATY 216 (527)
Q Consensus 143 vgsfga~Ll~r~V~~msiAp~D~seaqvq~A~eRg--~-pa~~~v~dae--~LPFpD~SFDlV~cs~~l~hw~d~~-~~a 216 (527)
.|.++.+|..+.-.+ ...|.++.+++.|.++. . .+.+.++|+. .+||++++||+|+|..+++|+.+.. ..+
T Consensus 48 ~G~~~~~la~~~~~v---~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~l~~l~~~~~~~~ 124 (475)
T PLN02336 48 IGRFTGELAKKAGQV---IALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDGSVDLIFSNWLLMYLSDKEVENL 124 (475)
T ss_pred cCHHHHHHHhhCCEE---EEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCCCEEEEehhhhHHhCCHHHHHHH
Confidence 344444555544332 33377888888876542 1 2456666764 6899999999999999998887653 359
Q ss_pred HHHHhhcccCCcEEEEecC
Q 009719 217 LIEVDRLLRPGGYLVISGP 235 (527)
Q Consensus 217 L~Ei~RVLRPGG~lviS~p 235 (527)
|.|+.|+|||||++++...
T Consensus 125 l~~~~r~Lk~gG~l~~~d~ 143 (475)
T PLN02336 125 AERMVKWLKVGGYIFFRES 143 (475)
T ss_pred HHHHHHhcCCCeEEEEEec
Confidence 9999999999999999653
No 6
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.23 E-value=5.5e-12 Score=125.10 Aligned_cols=75 Identities=33% Similarity=0.456 Sum_probs=56.4
Q ss_pred eeccCcChHHHHHHHHHc----CC-CcEEeeccccCCCCCCCcccEEEecCcccccccChHHHHHHHhhcccCCcEEEEe
Q 009719 159 SFAPRDSHKAQIQFALER----GI-PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVIS 233 (527)
Q Consensus 159 siAp~D~seaqvq~A~eR----g~-pa~~~v~dae~LPFpD~SFDlV~cs~~l~hw~d~~~~aL~Ei~RVLRPGG~lviS 233 (527)
.+...|.++.|++.|+++ +. .+.+.++|++.|||+|+|||+|+|++++++.++... +|+|+.|||||||+|++-
T Consensus 74 ~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~fglrn~~d~~~-~l~E~~RVLkPGG~l~il 152 (233)
T PF01209_consen 74 KVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSFGLRNFPDRER-ALREMYRVLKPGGRLVIL 152 (233)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES-GGG-SSHHH-HHHHHHHHEEEEEEEEEE
T ss_pred EEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHhhHHhhCCHHH-HHHHHHHHcCCCeEEEEe
Confidence 344448899999999876 22 467888999999999999999999999999887666 999999999999999984
Q ss_pred c
Q 009719 234 G 234 (527)
Q Consensus 234 ~ 234 (527)
.
T Consensus 153 e 153 (233)
T PF01209_consen 153 E 153 (233)
T ss_dssp E
T ss_pred e
Confidence 3
No 7
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.09 E-value=1.3e-10 Score=108.27 Aligned_cols=71 Identities=24% Similarity=0.188 Sum_probs=60.9
Q ss_pred CcChHHHHHHHHHcC--------CCcEEeeccccCCCCCCCcccEEEecCcccccccChHHHHHHHhhcccCCcEEEEec
Q 009719 163 RDSHKAQIQFALERG--------IPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISG 234 (527)
Q Consensus 163 ~D~seaqvq~A~eRg--------~pa~~~v~dae~LPFpD~SFDlV~cs~~l~hw~d~~~~aL~Ei~RVLRPGG~lviS~ 234 (527)
.|.|+.|++.|++|. ..+.+.++|++.|||++++||+|+++.+++|+.+... +|+|++|||||||+|++..
T Consensus 3 vD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~-~l~ei~rvLkpGG~l~i~d 81 (160)
T PLN02232 3 LDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLR-AMKEMYRVLKPGSRVSILD 81 (160)
T ss_pred EcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCHHH-HHHHHHHHcCcCeEEEEEE
Confidence 388999999997652 1256788999999999999999999999988876655 9999999999999999864
No 8
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.00 E-value=5.5e-10 Score=112.01 Aligned_cols=74 Identities=22% Similarity=0.171 Sum_probs=62.0
Q ss_pred ccCcChHHHHHHHHHcC-------C-CcEEeeccccCCCCCCCcccEEEecCcccccccChHHHHHHHhhcccCCcEEEE
Q 009719 161 APRDSHKAQIQFALERG-------I-PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVI 232 (527)
Q Consensus 161 Ap~D~seaqvq~A~eRg-------~-pa~~~v~dae~LPFpD~SFDlV~cs~~l~hw~d~~~~aL~Ei~RVLRPGG~lvi 232 (527)
...|.+++|++.|+++. . .+.+.++|++.|||++++||+|+|+.+++|+++... +|+|+.|||||||+|++
T Consensus 102 ~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~~l~~~~d~~~-~l~ei~rvLkpGG~l~i 180 (261)
T PLN02233 102 MGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMGYGLRNVVDRLK-AMQEMYRVLKPGSRVSI 180 (261)
T ss_pred EEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEEecccccCCCHHH-HHHHHHHHcCcCcEEEE
Confidence 33477889999997652 1 345778899999999999999999999988876655 99999999999999999
Q ss_pred ecC
Q 009719 233 SGP 235 (527)
Q Consensus 233 S~p 235 (527)
...
T Consensus 181 ~d~ 183 (261)
T PLN02233 181 LDF 183 (261)
T ss_pred EEC
Confidence 764
No 9
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=98.92 E-value=1.5e-09 Score=109.23 Aligned_cols=70 Identities=23% Similarity=0.230 Sum_probs=58.7
Q ss_pred cChHHHHHHHHHc----CCC----cEEeeccccCCCCCCCcccEEEecCcccccccChHHHHHHHhhcccCCcEEEEec
Q 009719 164 DSHKAQIQFALER----GIP----AFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISG 234 (527)
Q Consensus 164 D~seaqvq~A~eR----g~p----a~~~v~dae~LPFpD~SFDlV~cs~~l~hw~d~~~~aL~Ei~RVLRPGG~lviS~ 234 (527)
|+++.|+..+++| ++. ..+..+|++.|||+|++||+.+.+..+.+|++.++ +|+|++|||||||+|.+-.
T Consensus 137 Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D~yTiafGIRN~th~~k-~l~EAYRVLKpGGrf~cLe 214 (296)
T KOG1540|consen 137 DINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFDAYTIAFGIRNVTHIQK-ALREAYRVLKPGGRFSCLE 214 (296)
T ss_pred eCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcceeEEEecceecCCCHHH-HHHHHHHhcCCCcEEEEEE
Confidence 5566787777655 332 34567899999999999999999999999999887 9999999999999998743
No 10
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=98.85 E-value=4.6e-09 Score=103.46 Aligned_cols=88 Identities=16% Similarity=0.204 Sum_probs=68.9
Q ss_pred hccccccccCCeeEEeeccCcChHHHHHHHHHcCCCcEEeeccccCCCCCCCcccEEEecCcccccccChHHHHHHHhhc
Q 009719 144 ASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRL 223 (527)
Q Consensus 144 gsfga~Ll~r~V~~msiAp~D~seaqvq~A~eRg~pa~~~v~dae~LPFpD~SFDlV~cs~~l~hw~d~~~~aL~Ei~RV 223 (527)
|.++..|..++..+ ...|.+++|++.|+++.....+.++|.+.+||++++||+|+|+.++ ||..+...+|.|+.|+
T Consensus 54 G~~~~~l~~~~~~v---~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~V~s~~~l-~~~~d~~~~l~~~~~~ 129 (251)
T PRK10258 54 GWMSRYWRERGSQV---TALDLSPPMLAQARQKDAADHYLAGDIESLPLATATFDLAWSNLAV-QWCGNLSTALRELYRV 129 (251)
T ss_pred CHHHHHHHHcCCeE---EEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEEEEEECchh-hhcCCHHHHHHHHHHH
Confidence 33334445555433 3337889999999988654566778999999999999999999886 6665665699999999
Q ss_pred ccCCcEEEEecC
Q 009719 224 LRPGGYLVISGP 235 (527)
Q Consensus 224 LRPGG~lviS~p 235 (527)
|||||+|++++.
T Consensus 130 Lk~gG~l~~~~~ 141 (251)
T PRK10258 130 VRPGGVVAFTTL 141 (251)
T ss_pred cCCCeEEEEEeC
Confidence 999999999976
No 11
>PLN02244 tocopherol O-methyltransferase
Probab=98.83 E-value=5.7e-09 Score=108.55 Aligned_cols=71 Identities=20% Similarity=0.233 Sum_probs=60.9
Q ss_pred cChHHHHHHHHHc----CC--CcEEeeccccCCCCCCCcccEEEecCcccccccChHHHHHHHhhcccCCcEEEEecC
Q 009719 164 DSHKAQIQFALER----GI--PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 235 (527)
Q Consensus 164 D~seaqvq~A~eR----g~--pa~~~v~dae~LPFpD~SFDlV~cs~~l~hw~d~~~~aL~Ei~RVLRPGG~lviS~p 235 (527)
|.++.|++.|+++ ++ .+.+.++|+..+||++++||+|+|..+++|+.+... +|.|+.|||||||+|++++.
T Consensus 148 D~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~~h~~d~~~-~l~e~~rvLkpGG~lvi~~~ 224 (340)
T PLN02244 148 TLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESGEHMPDKRK-FVQELARVAAPGGRIIIVTW 224 (340)
T ss_pred ECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCchhccCCHHH-HHHHHHHHcCCCcEEEEEEe
Confidence 6778888877653 44 356788899999999999999999999999987665 99999999999999999764
No 12
>PRK05785 hypothetical protein; Provisional
Probab=98.74 E-value=1.4e-08 Score=99.95 Aligned_cols=73 Identities=21% Similarity=0.241 Sum_probs=58.2
Q ss_pred eeccCcChHHHHHHHHHcCCCcEEeeccccCCCCCCCcccEEEecCcccccccChHHHHHHHhhcccCCc-EEEEecC
Q 009719 159 SFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGG-YLVISGP 235 (527)
Q Consensus 159 siAp~D~seaqvq~A~eRg~pa~~~v~dae~LPFpD~SFDlV~cs~~l~hw~d~~~~aL~Ei~RVLRPGG-~lviS~p 235 (527)
.+...|.+++|++.|+++. ...+++++.|||++++||+|+|+.+++|+.+... +|+|+.|||||.+ .+-++.|
T Consensus 76 ~v~gvD~S~~Ml~~a~~~~---~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d~~~-~l~e~~RvLkp~~~ile~~~p 149 (226)
T PRK05785 76 YVVALDYAENMLKMNLVAD---DKVVGSFEALPFRDKSFDVVMSSFALHASDNIEK-VIAEFTRVSRKQVGFIAMGKP 149 (226)
T ss_pred EEEEECCCHHHHHHHHhcc---ceEEechhhCCCCCCCEEEEEecChhhccCCHHH-HHHHHHHHhcCceEEEEeCCC
Confidence 3445588999999998763 3456899999999999999999999988776665 9999999999954 3334444
No 13
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=98.73 E-value=1e-08 Score=106.55 Aligned_cols=91 Identities=14% Similarity=0.111 Sum_probs=71.3
Q ss_pred hhcccccc----ccCCeeEEeeccCcChHHHHHHHHHcC----C--CcEEeeccccCCCCCCCcccEEEecCcccccccC
Q 009719 143 VASFGGSM----LSENILTLSFAPRDSHKAQIQFALERG----I--PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAY 212 (527)
Q Consensus 143 vgsfga~L----l~r~V~~msiAp~D~seaqvq~A~eRg----~--pa~~~v~dae~LPFpD~SFDlV~cs~~l~hw~d~ 212 (527)
+|+.+|.+ ...|.. +...|.++.|+++|+++. . .+.+..++++.||+++++||+|+|..+++|+.+.
T Consensus 138 IGCG~G~~s~~La~~g~~---V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLeHv~d~ 214 (322)
T PLN02396 138 IGCGGGLLSEPLARMGAT---VTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIEHVANP 214 (322)
T ss_pred eeCCCCHHHHHHHHcCCE---EEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHHhcCCH
Confidence 56655543 344543 334488889999998652 1 3456778889999999999999999999999887
Q ss_pred hHHHHHHHhhcccCCcEEEEecCCC
Q 009719 213 NATYLIEVDRLLRPGGYLVISGPPV 237 (527)
Q Consensus 213 ~~~aL~Ei~RVLRPGG~lviS~pp~ 237 (527)
.. +|.|+.|+|||||.+++++...
T Consensus 215 ~~-~L~~l~r~LkPGG~liist~nr 238 (322)
T PLN02396 215 AE-FCKSLSALTIPNGATVLSTINR 238 (322)
T ss_pred HH-HHHHHHHHcCCCcEEEEEECCc
Confidence 66 9999999999999999998643
No 14
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=98.65 E-value=3.3e-08 Score=98.05 Aligned_cols=72 Identities=22% Similarity=0.252 Sum_probs=58.8
Q ss_pred eccCcChHHHHHHHHHcCCCcEEeeccccCCCCCCCcccEEEecCcccccccChHHHHHHHhhcccCCcEEEEecC
Q 009719 160 FAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 235 (527)
Q Consensus 160 iAp~D~seaqvq~A~eRg~pa~~~v~dae~LPFpD~SFDlV~cs~~l~hw~d~~~~aL~Ei~RVLRPGG~lviS~p 235 (527)
+...|.++.|++.|+++++ .+.++|++.++ ++++||+|+|+.+++|.++... +|+++.|+|||||+|++..+
T Consensus 56 v~gvD~s~~~~~~a~~~~~--~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~d~~~-~l~~~~~~LkpgG~l~~~~~ 127 (255)
T PRK14103 56 IEALDSSPEMVAAARERGV--DARTGDVRDWK-PKPDTDVVVSNAALQWVPEHAD-LLVRWVDELAPGSWIAVQVP 127 (255)
T ss_pred EEEEECCHHHHHHHHhcCC--cEEEcChhhCC-CCCCceEEEEehhhhhCCCHHH-HHHHHHHhCCCCcEEEEEcC
Confidence 3444778899999988764 46667888885 6789999999999877665544 99999999999999999865
No 15
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=98.60 E-value=7.1e-08 Score=97.00 Aligned_cols=76 Identities=16% Similarity=0.227 Sum_probs=62.5
Q ss_pred eccCcChHHHHHHHHHcCC---CcEEeeccccCCCCCCCcccEEEecCccccccc-ChHHHHHHHhhcccCCcEEEEecC
Q 009719 160 FAPRDSHKAQIQFALERGI---PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTA-YNATYLIEVDRLLRPGGYLVISGP 235 (527)
Q Consensus 160 iAp~D~seaqvq~A~eRg~---pa~~~v~dae~LPFpD~SFDlV~cs~~l~hw~d-~~~~aL~Ei~RVLRPGG~lviS~p 235 (527)
+...|.++.|++.|+++.. .+.+..+|...+||++++||+|++..+++|+.. +...+|+|+.|+|||||+|+++.+
T Consensus 78 v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 78 VHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred EEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 4444778899999988742 255667888899999999999999988889863 344599999999999999999875
No 16
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=98.57 E-value=1.4e-07 Score=92.87 Aligned_cols=88 Identities=24% Similarity=0.314 Sum_probs=67.7
Q ss_pred eeccCcChHHHHHHHHHc-----CCCc-EEeeccccCCC-CCCCcccEEEecCcccccccChHHHHHHHhhcccCCcEEE
Q 009719 159 SFAPRDSHKAQIQFALER-----GIPA-FVAMLGTRRLP-FPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLV 231 (527)
Q Consensus 159 siAp~D~seaqvq~A~eR-----g~pa-~~~v~dae~LP-FpD~SFDlV~cs~~l~hw~d~~~~aL~Ei~RVLRPGG~lv 231 (527)
+++..|.++.|-++|.++ .... .+++++.++|| .+|+|+|+|+|.+||.-..+..+ .|.|+.|+|||||+++
T Consensus 101 svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvLCSve~~~k-~L~e~~rlLRpgG~ii 179 (252)
T KOG4300|consen 101 SVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLVLCSVEDPVK-QLNEVRRLLRPGGRII 179 (252)
T ss_pred eEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEEEeccCCHHH-HHHHHHHhcCCCcEEE
Confidence 444457788888877643 1223 47899999999 89999999999999988776666 9999999999999999
Q ss_pred EecCCCCCCCchhHHHHHH
Q 009719 232 ISGPPVQWPKQDKEWADLQ 250 (527)
Q Consensus 232 iS~pp~~~~~~~~~w~~i~ 250 (527)
+-.+- .+.+..|++|-
T Consensus 180 fiEHv---a~~y~~~n~i~ 195 (252)
T KOG4300|consen 180 FIEHV---AGEYGFWNRIL 195 (252)
T ss_pred EEecc---cccchHHHHHH
Confidence 98762 23455566643
No 17
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.52 E-value=1.6e-07 Score=101.08 Aligned_cols=75 Identities=24% Similarity=0.345 Sum_probs=62.9
Q ss_pred eccCcChHHHHHHHHHcC--C--CcEEeeccccCCCCCCCcccEEEecCcccccccChHHHHHHHhhcccCCcEEEEecC
Q 009719 160 FAPRDSHKAQIQFALERG--I--PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 235 (527)
Q Consensus 160 iAp~D~seaqvq~A~eRg--~--pa~~~v~dae~LPFpD~SFDlV~cs~~l~hw~d~~~~aL~Ei~RVLRPGG~lviS~p 235 (527)
+...|.++.|++.|+++. . .+.+.++|...+||++++||+|+|..+++|+.+... +|.|+.|+|||||+++++.+
T Consensus 292 v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~s~~~l~h~~d~~~-~l~~~~r~LkpgG~l~i~~~ 370 (475)
T PLN02336 292 VVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSFDVIYSRDTILHIQDKPA-LFRSFFKWLKPGGKVLISDY 370 (475)
T ss_pred EEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCEEEEEECCcccccCCHHH-HHHHHHHHcCCCeEEEEEEe
Confidence 334477889999987652 2 356777898899999999999999999999987665 99999999999999999875
No 18
>PRK08317 hypothetical protein; Provisional
Probab=98.50 E-value=1.3e-07 Score=90.03 Aligned_cols=75 Identities=33% Similarity=0.440 Sum_probs=62.1
Q ss_pred eccCcChHHHHHHHHHc----CCCcEEeeccccCCCCCCCcccEEEecCcccccccChHHHHHHHhhcccCCcEEEEecC
Q 009719 160 FAPRDSHKAQIQFALER----GIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 235 (527)
Q Consensus 160 iAp~D~seaqvq~A~eR----g~pa~~~v~dae~LPFpD~SFDlV~cs~~l~hw~d~~~~aL~Ei~RVLRPGG~lviS~p 235 (527)
+...|.++.+++.|+++ +....+..+|.+.+|+++++||+|++..+++|+.+... ++.++.++|||||++++..+
T Consensus 47 v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~-~l~~~~~~L~~gG~l~~~~~ 125 (241)
T PRK08317 47 VVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSFDAVRSDRVLQHLEDPAR-ALAEIARVLRPGGRVVVLDT 125 (241)
T ss_pred EEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCceEEEEechhhccCCHHH-HHHHHHHHhcCCcEEEEEec
Confidence 33447778888888876 22355667888899999999999999999988887665 99999999999999999876
No 19
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=98.50 E-value=1.1e-07 Score=95.61 Aligned_cols=70 Identities=24% Similarity=0.366 Sum_probs=58.6
Q ss_pred eeccCcChHHHHHHHHHcCCCcEEeeccccCCCCCCCcccEEEecCcccccccChHHHHHHHhhcccCCcEEEEecCC
Q 009719 159 SFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPP 236 (527)
Q Consensus 159 siAp~D~seaqvq~A~eRg~pa~~~v~dae~LPFpD~SFDlV~cs~~l~hw~d~~~~aL~Ei~RVLRPGG~lviS~pp 236 (527)
.+...|.++.+++.|.++...+.+.++++..|||++++||+|++..+ .. .+.|+.|+|||||+|++..|.
T Consensus 114 ~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~-------~~-~~~e~~rvLkpgG~li~~~p~ 183 (272)
T PRK11088 114 QLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYA-------PC-KAEELARVVKPGGIVITVTPG 183 (272)
T ss_pred eEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecC-------CC-CHHHHHhhccCCCEEEEEeCC
Confidence 34555889999999988866677888999999999999999998653 12 578999999999999998873
No 20
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=98.46 E-value=2.8e-07 Score=92.00 Aligned_cols=73 Identities=21% Similarity=0.199 Sum_probs=59.7
Q ss_pred cCcChHHHHHHHHHc----CC-CcEEeeccccCCCCCCCcccEEEecCcccccccChHHHHHHHhhcccCCcEEEEecC
Q 009719 162 PRDSHKAQIQFALER----GI-PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 235 (527)
Q Consensus 162 p~D~seaqvq~A~eR----g~-pa~~~v~dae~LPFpD~SFDlV~cs~~l~hw~d~~~~aL~Ei~RVLRPGG~lviS~p 235 (527)
..|.++.|++.|+++ +. .+.+..++.+.+||++++||+|++..+++|+++... +|.|+.|+|||||+|++++.
T Consensus 107 gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~v~~~~~d~~~-~l~~~~r~LkpGG~l~i~~~ 184 (272)
T PRK11873 107 GVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNCVINLSPDKER-VFKEAFRVLKPGGRFAISDV 184 (272)
T ss_pred EECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcCcccCCCCHHH-HHHHHHHHcCCCcEEEEEEe
Confidence 337788899988864 33 345667889999999999999999988876665555 99999999999999999864
No 21
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=98.46 E-value=3.3e-07 Score=89.94 Aligned_cols=74 Identities=18% Similarity=0.193 Sum_probs=58.4
Q ss_pred eccCcChHHHHHHHHHc----C--CCcEEeeccccCCCCCCCcccEEEecCcccccccCh-HHHHHHHhhcccCCcEEEE
Q 009719 160 FAPRDSHKAQIQFALER----G--IPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYN-ATYLIEVDRLLRPGGYLVI 232 (527)
Q Consensus 160 iAp~D~seaqvq~A~eR----g--~pa~~~v~dae~LPFpD~SFDlV~cs~~l~hw~d~~-~~aL~Ei~RVLRPGG~lvi 232 (527)
+...|.++.|++.|+++ + ..+.+.++|...+|+++ ||+|+|+.+++|+.+.+ ..+|.++.|+|||||+|++
T Consensus 82 v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~--~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i 159 (239)
T TIGR00740 82 IIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKN--ASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVL 159 (239)
T ss_pred EEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCC--CCEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEE
Confidence 33347788999998765 2 23567788999999874 89999999987776432 3599999999999999999
Q ss_pred ecC
Q 009719 233 SGP 235 (527)
Q Consensus 233 S~p 235 (527)
+.+
T Consensus 160 ~d~ 162 (239)
T TIGR00740 160 SEK 162 (239)
T ss_pred eec
Confidence 976
No 22
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.46 E-value=1.7e-07 Score=93.16 Aligned_cols=89 Identities=16% Similarity=0.085 Sum_probs=67.3
Q ss_pred hhccccccccCCeeEEeeccCcChHHHHHHHHHc----CCC--cEEeeccccCCC-CCCCcccEEEecCcccccccChHH
Q 009719 143 VASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIP--AFVAMLGTRRLP-FPAFSFDIVHCSRCLIPFTAYNAT 215 (527)
Q Consensus 143 vgsfga~Ll~r~V~~msiAp~D~seaqvq~A~eR----g~p--a~~~v~dae~LP-FpD~SFDlV~cs~~l~hw~d~~~~ 215 (527)
.|.++..|..++..+. ..|.++.|++.|+++ |+. +.+..++++.++ +++++||+|+|..+++|+.+...
T Consensus 55 ~G~~a~~la~~g~~v~---~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~vl~~~~~~~~- 130 (255)
T PRK11036 55 EGQTAIKLAELGHQVI---LCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAVLEWVADPKS- 130 (255)
T ss_pred chHHHHHHHHcCCEEE---EEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhHHHhhCCHHH-
Confidence 4445555666665433 348888999988765 332 456677887774 78899999999999877766554
Q ss_pred HHHHHhhcccCCcEEEEecC
Q 009719 216 YLIEVDRLLRPGGYLVISGP 235 (527)
Q Consensus 216 aL~Ei~RVLRPGG~lviS~p 235 (527)
+|.++.|+|||||++++...
T Consensus 131 ~l~~~~~~LkpgG~l~i~~~ 150 (255)
T PRK11036 131 VLQTLWSVLRPGGALSLMFY 150 (255)
T ss_pred HHHHHHHHcCCCeEEEEEEE
Confidence 99999999999999998765
No 23
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=98.45 E-value=1e-07 Score=95.33 Aligned_cols=93 Identities=23% Similarity=0.289 Sum_probs=74.1
Q ss_pred hhcccccc----ccCCeeEEeeccCcChHHHHHHHHHc----CCCcEEeeccccCCCCCCCcccEEEecCcccccccChH
Q 009719 143 VASFGGSM----LSENILTLSFAPRDSHKAQIQFALER----GIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNA 214 (527)
Q Consensus 143 vgsfga~L----l~r~V~~msiAp~D~seaqvq~A~eR----g~pa~~~v~dae~LPFpD~SFDlV~cs~~l~hw~d~~~ 214 (527)
+|+-||-| ...|. ++...|.++.+|+.|+.+ |+.+......++.|-...++||+|+|..+++|+++...
T Consensus 66 vGCGgG~Lse~mAr~Ga---~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv~dp~~ 142 (243)
T COG2227 66 VGCGGGILSEPLARLGA---SVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEHVPDPES 142 (243)
T ss_pred ecCCccHhhHHHHHCCC---eeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHccCCHHH
Confidence 66655544 33464 455558899999988744 55555666778888887899999999999999998887
Q ss_pred HHHHHHhhcccCCcEEEEecCCCCC
Q 009719 215 TYLIEVDRLLRPGGYLVISGPPVQW 239 (527)
Q Consensus 215 ~aL~Ei~RVLRPGG~lviS~pp~~~ 239 (527)
+++++.+.|||||.+++|++..++
T Consensus 143 -~~~~c~~lvkP~G~lf~STinrt~ 166 (243)
T COG2227 143 -FLRACAKLVKPGGILFLSTINRTL 166 (243)
T ss_pred -HHHHHHHHcCCCcEEEEeccccCH
Confidence 999999999999999999986554
No 24
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.44 E-value=9.2e-08 Score=85.98 Aligned_cols=86 Identities=30% Similarity=0.493 Sum_probs=63.4
Q ss_pred hhccccccccCCeeEEeeccCcChHHHHHHHHHcCCCcEEeeccccCCCCCCCcccEEEecCcccccccChHHHHHHHhh
Q 009719 143 VASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDR 222 (527)
Q Consensus 143 vgsfga~Ll~r~V~~msiAp~D~seaqvq~A~eRg~pa~~~v~dae~LPFpD~SFDlV~cs~~l~hw~d~~~~aL~Ei~R 222 (527)
.|.++..|...+. .+...|.++.+++. ........+....++++++||+|+|..+++|..+... +|.++.|
T Consensus 33 ~G~~~~~l~~~~~---~~~g~D~~~~~~~~-----~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~d~~~-~l~~l~~ 103 (161)
T PF13489_consen 33 TGSFLRALAKRGF---EVTGVDISPQMIEK-----RNVVFDNFDAQDPPFPDGSFDLIICNDVLEHLPDPEE-FLKELSR 103 (161)
T ss_dssp TSHHHHHHHHTTS---EEEEEESSHHHHHH-----TTSEEEEEECHTHHCHSSSEEEEEEESSGGGSSHHHH-HHHHHHH
T ss_pred CCHHHHHHHHhCC---EEEEEECCHHHHhh-----hhhhhhhhhhhhhhccccchhhHhhHHHHhhcccHHH-HHHHHHH
Confidence 4555556666666 34444777777766 2223333444567788999999999999999886555 9999999
Q ss_pred cccCCcEEEEecCCC
Q 009719 223 LLRPGGYLVISGPPV 237 (527)
Q Consensus 223 VLRPGG~lviS~pp~ 237 (527)
+|||||+++++.+..
T Consensus 104 ~LkpgG~l~~~~~~~ 118 (161)
T PF13489_consen 104 LLKPGGYLVISDPNR 118 (161)
T ss_dssp CEEEEEEEEEEEEBT
T ss_pred hcCCCCEEEEEEcCC
Confidence 999999999999843
No 25
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=98.42 E-value=4.7e-07 Score=89.50 Aligned_cols=73 Identities=21% Similarity=0.208 Sum_probs=58.4
Q ss_pred ccCcChHHHHHHHHHcCCCcEEeeccccCCCCCCCcccEEEecCcccccccChHHHHHHHhhcccCCcEEEEecC
Q 009719 161 APRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 235 (527)
Q Consensus 161 Ap~D~seaqvq~A~eRg~pa~~~v~dae~LPFpD~SFDlV~cs~~l~hw~d~~~~aL~Ei~RVLRPGG~lviS~p 235 (527)
...|.++.|++.|+++...+.+..+|.+.++ ++++||+|+|+.+++|..+. ..+|.++.|+|||||+|+++.+
T Consensus 59 ~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~d~-~~~l~~~~~~LkpgG~~~~~~~ 131 (258)
T PRK01683 59 TGIDSSPAMLAEARSRLPDCQFVEADIASWQ-PPQALDLIFANASLQWLPDH-LELFPRLVSLLAPGGVLAVQMP 131 (258)
T ss_pred EEEECCHHHHHHHHHhCCCCeEEECchhccC-CCCCccEEEEccChhhCCCH-HHHHHHHHHhcCCCcEEEEECC
Confidence 3337788999999887545667778887765 56799999999998655554 4599999999999999999875
No 26
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=98.40 E-value=3.1e-07 Score=87.82 Aligned_cols=90 Identities=21% Similarity=0.230 Sum_probs=67.0
Q ss_pred hccccccccCCeeEEeeccCcChHHHHHHHHHcCCC-cEEeeccccCCCCCCCcccEEEecCcccccccChHHHHHHHhh
Q 009719 144 ASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIP-AFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDR 222 (527)
Q Consensus 144 gsfga~Ll~r~V~~msiAp~D~seaqvq~A~eRg~p-a~~~v~dae~LPFpD~SFDlV~cs~~l~hw~d~~~~aL~Ei~R 222 (527)
|.++.+|...+.. ..+...|.++.+++.|.++..+ ..+..+|.+.+|+++++||+|+|+.+++|..+.. .+|.++.|
T Consensus 46 G~~~~~l~~~~~~-~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~~~~-~~l~~~~~ 123 (240)
T TIGR02072 46 GYLTRALLKRFPQ-AEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWCDDLS-QALSELAR 123 (240)
T ss_pred cHHHHHHHHhCCC-CcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhhccCHH-HHHHHHHH
Confidence 3344445444321 1234447788899888877533 4567788899999999999999999986655544 49999999
Q ss_pred cccCCcEEEEecC
Q 009719 223 LLRPGGYLVISGP 235 (527)
Q Consensus 223 VLRPGG~lviS~p 235 (527)
+|||||+++++.+
T Consensus 124 ~L~~~G~l~~~~~ 136 (240)
T TIGR02072 124 VLKPGGLLAFSTF 136 (240)
T ss_pred HcCCCcEEEEEeC
Confidence 9999999999876
No 27
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=98.40 E-value=3.9e-07 Score=95.65 Aligned_cols=75 Identities=20% Similarity=0.200 Sum_probs=62.6
Q ss_pred eccCcChHHHHHHHHHcC--CCcEEeeccccCCCCCCCcccEEEecCcccccccChHHHHHHHhhcccCCcEEEEecC
Q 009719 160 FAPRDSHKAQIQFALERG--IPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 235 (527)
Q Consensus 160 iAp~D~seaqvq~A~eRg--~pa~~~v~dae~LPFpD~SFDlV~cs~~l~hw~d~~~~aL~Ei~RVLRPGG~lviS~p 235 (527)
+...|.++.|++.|+++. ....+..+|.+.+||++++||+|+++.+++||.+... +|+|+.|+|||||++++.++
T Consensus 140 VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~~d~~~-~L~e~~rvLkPGG~LvIi~~ 216 (340)
T PLN02490 140 VTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQR-GIKEAYRVLKIGGKACLIGP 216 (340)
T ss_pred EEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhCCCHHH-HHHHHHHhcCCCcEEEEEEe
Confidence 334477889999998763 1345677899999999999999999999988887765 99999999999999998765
No 28
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=98.40 E-value=2.6e-07 Score=89.59 Aligned_cols=71 Identities=25% Similarity=0.343 Sum_probs=58.1
Q ss_pred cChHHHHHHHHHc----CC-CcEEeeccccCCCCCCCcccEEEecCcccccccChHHHHHHHhhcccCCcEEEEecC
Q 009719 164 DSHKAQIQFALER----GI-PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 235 (527)
Q Consensus 164 D~seaqvq~A~eR----g~-pa~~~v~dae~LPFpD~SFDlV~cs~~l~hw~d~~~~aL~Ei~RVLRPGG~lviS~p 235 (527)
|.++.|++.|+++ +. ...+..+|++.+||++++||+|++..+++|+.+... +|.|+.|+|||||++++..+
T Consensus 77 D~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~-~l~~~~~~Lk~gG~l~~~~~ 152 (231)
T TIGR02752 77 DFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNSFDYVTIGFGLRNVPDYMQ-VLREMYRVVKPGGKVVCLET 152 (231)
T ss_pred ECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCCccEEEEecccccCCCHHH-HHHHHHHHcCcCeEEEEEEC
Confidence 6677888888754 23 245677888899999999999999998877766655 99999999999999998664
No 29
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=98.33 E-value=2.7e-07 Score=78.74 Aligned_cols=70 Identities=30% Similarity=0.420 Sum_probs=57.0
Q ss_pred eeccCcChHHHHHHHHHcC----CCcEEeeccccCCCCCCCcccEEEecCc-ccccccCh-HHHHHHHhhcccCCc
Q 009719 159 SFAPRDSHKAQIQFALERG----IPAFVAMLGTRRLPFPAFSFDIVHCSRC-LIPFTAYN-ATYLIEVDRLLRPGG 228 (527)
Q Consensus 159 siAp~D~seaqvq~A~eRg----~pa~~~v~dae~LPFpD~SFDlV~cs~~-l~hw~d~~-~~aL~Ei~RVLRPGG 228 (527)
.+...|.+++|++.|+++. .++.+.++|.+.||+.+++||+|+|+.+ ++|+.+.. ..+|.++.++|||||
T Consensus 26 ~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 26 RVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp EEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred eEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 3444588999999998774 6788999999999999999999999665 77766544 359999999999998
No 30
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.32 E-value=8.7e-07 Score=89.47 Aligned_cols=78 Identities=22% Similarity=0.293 Sum_probs=63.2
Q ss_pred EeeccCcChHHHHHHHHHcC--------C------------------------CcEEeeccccCCCCCCCcccEEEecCc
Q 009719 158 LSFAPRDSHKAQIQFALERG--------I------------------------PAFVAMLGTRRLPFPAFSFDIVHCSRC 205 (527)
Q Consensus 158 msiAp~D~seaqvq~A~eRg--------~------------------------pa~~~v~dae~LPFpD~SFDlV~cs~~ 205 (527)
..|...|+++.|++.|++.- + .+.+.++|...+|+++++||+|+|..+
T Consensus 133 ~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnv 212 (264)
T smart00138 133 VKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNV 212 (264)
T ss_pred eEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCCCCCccCCCCEEEechh
Confidence 45666699999999998631 1 245667888888989999999999999
Q ss_pred ccccccCh-HHHHHHHhhcccCCcEEEEecC
Q 009719 206 LIPFTAYN-ATYLIEVDRLLRPGGYLVISGP 235 (527)
Q Consensus 206 l~hw~d~~-~~aL~Ei~RVLRPGG~lviS~p 235 (527)
++|+.+.. ..++.++.|+|||||+|++...
T Consensus 213 l~yf~~~~~~~~l~~l~~~L~pGG~L~lg~~ 243 (264)
T smart00138 213 LIYFDEPTQRKLLNRFAEALKPGGYLFLGHS 243 (264)
T ss_pred HHhCCHHHHHHHHHHHHHHhCCCeEEEEECc
Confidence 99986544 3599999999999999999654
No 31
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=98.30 E-value=9.7e-07 Score=91.63 Aligned_cols=70 Identities=24% Similarity=0.233 Sum_probs=54.7
Q ss_pred cChHHHHHHHH--Hc----CCCcEEeeccccCCCCCCCcccEEEecCcccccccChHHHHHHHhhcccCCcEEEEecC
Q 009719 164 DSHKAQIQFAL--ER----GIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 235 (527)
Q Consensus 164 D~seaqvq~A~--eR----g~pa~~~v~dae~LPFpD~SFDlV~cs~~l~hw~d~~~~aL~Ei~RVLRPGG~lviS~p 235 (527)
|.++.++..+. ++ ...+.+..++.+.+|+ +++||+|+|..+++|..+... +|+++.|+|||||.|++++.
T Consensus 152 D~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~vl~H~~dp~~-~L~~l~~~LkpGG~lvl~~~ 227 (322)
T PRK15068 152 DPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSMGVLYHRRSPLD-HLKQLKDQLVPGGELVLETL 227 (322)
T ss_pred cCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEECChhhccCCHHH-HHHHHHHhcCCCcEEEEEEE
Confidence 56666664332 22 1245677788999999 899999999999988876655 99999999999999999753
No 32
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=98.29 E-value=3.2e-06 Score=81.22 Aligned_cols=126 Identities=13% Similarity=0.155 Sum_probs=76.6
Q ss_pred hhccccccccCCeeEEeeccCcChHHHHHHHHH----cCCCcEEeeccccCCCCCCCcccEEEecCcccccccC-hHHHH
Q 009719 143 VASFGGSMLSENILTLSFAPRDSHKAQIQFALE----RGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAY-NATYL 217 (527)
Q Consensus 143 vgsfga~Ll~r~V~~msiAp~D~seaqvq~A~e----Rg~pa~~~v~dae~LPFpD~SFDlV~cs~~l~hw~d~-~~~aL 217 (527)
.|.++.+|..++..+ ...|.++.+++.|++ .+++....+++...++++ ++||+|+|+.+++|+... ...++
T Consensus 41 ~G~~a~~la~~g~~V---~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~~~~~~~~~~~~~l 116 (195)
T TIGR00477 41 QGRNSLYLSLAGYDV---RAWDHNPASIASVLDMKARENLPLRTDAYDINAAALN-EDYDFIFSTVVFMFLQAGRVPEII 116 (195)
T ss_pred CCHHHHHHHHCCCeE---EEEECCHHHHHHHHHHHHHhCCCceeEeccchhcccc-CCCCEEEEecccccCCHHHHHHHH
Confidence 455555666666433 334778888887654 356655666677667775 689999999998777543 23599
Q ss_pred HHHhhcccCCcEEEEec-C-CCCCC----Cc-hhHHHHHHHHHHhcceEEeeeecceEEEeCCC
Q 009719 218 IEVDRLLRPGGYLVISG-P-PVQWP----KQ-DKEWADLQAVARALCYELIAVDGNTVIWKKPV 274 (527)
Q Consensus 218 ~Ei~RVLRPGG~lviS~-p-p~~~~----~~-~~~w~~i~~l~~~mcW~~~~~~~~v~iwrKp~ 274 (527)
.++.|+|||||++++-. . ....+ .+ ....+.+.++.+. |+.+.-...+.-+.+..
T Consensus 117 ~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~~~~~~~el~~~f~~--~~~~~~~e~~~~~~~~~ 178 (195)
T TIGR00477 117 ANMQAHTRPGGYNLIVAAMDTADYPCHMPFSFTFKEDELRQYYAD--WELLKYNEAVGELHATD 178 (195)
T ss_pred HHHHHHhCCCcEEEEEEecccCCCCCCCCcCccCCHHHHHHHhCC--CeEEEeecccccccccc
Confidence 99999999999965531 1 00000 01 1123344444432 77666655555555543
No 33
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=98.27 E-value=1.6e-06 Score=83.44 Aligned_cols=86 Identities=16% Similarity=0.231 Sum_probs=61.8
Q ss_pred hhccccccccCCeeEEeeccCcChHHHHHHHHHc----CCC-cEEeeccccCCCCCCCcccEEEecCcccccccC-hHHH
Q 009719 143 VASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIP-AFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAY-NATY 216 (527)
Q Consensus 143 vgsfga~Ll~r~V~~msiAp~D~seaqvq~A~eR----g~p-a~~~v~dae~LPFpD~SFDlV~cs~~l~hw~d~-~~~a 216 (527)
.|.++.+|.+++..+..+ |.++.+++.|+++ ++. +.+.++|...++++ ++||+|+|+.+++|+... ...+
T Consensus 41 ~G~~a~~La~~g~~V~gv---D~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~~~~~~~~~~~~~ 116 (197)
T PRK11207 41 NGRNSLYLAANGFDVTAW---DKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFD-GEYDFILSTVVLMFLEAKTIPGL 116 (197)
T ss_pred CCHHHHHHHHCCCEEEEE---eCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcC-CCcCEEEEecchhhCCHHHHHHH
Confidence 455666677776544344 7788888877643 443 45566777778885 679999999988665532 2359
Q ss_pred HHHHhhcccCCcEEEE
Q 009719 217 LIEVDRLLRPGGYLVI 232 (527)
Q Consensus 217 L~Ei~RVLRPGG~lvi 232 (527)
+.++.|+|||||++++
T Consensus 117 l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 117 IANMQRCTKPGGYNLI 132 (197)
T ss_pred HHHHHHHcCCCcEEEE
Confidence 9999999999999654
No 34
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=98.25 E-value=1.3e-07 Score=77.27 Aligned_cols=91 Identities=20% Similarity=0.245 Sum_probs=58.3
Q ss_pred eecCCCccchhhhccCC-CeeEEEecCCCCCCchhHhhhccccc---cccccCCCCCCCCCccchhhhcCccccccCCCC
Q 009719 378 MDMNAFFGGFAAALTSD-PVWVMNVVPARKSSTLSVIYDRGLIG---VYHDWCEPFSTYPRTYDLIHVSGIESLIKNPGS 453 (527)
Q Consensus 378 mDm~ag~GgFaAaL~~~-~VwvMnvvp~~~~ntl~vi~eRGLiG---~~hdwce~fstYPrtyDLiHa~~~fs~~~~~~~ 453 (527)
||+|||.|-+++.|.+. +.=|..+-+.. ..++.+-++.--. ..+.=-+.++.-+.+||+|++..+|..+.
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~--~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~---- 74 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISE--EMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLE---- 74 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-H--HHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGSS----
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCH--HHHHHHHhcccccCchheeehHHhCccccccccccccccceeecc----
Confidence 79999999999999887 54444333332 3344444433211 22111233332349999999999988652
Q ss_pred CCCCCcccccceeecccccCCcEEEE
Q 009719 454 NKNSCSLVDLMVEMDRMLRPEGTVVV 479 (527)
Q Consensus 454 ~~~rC~~~~illEmDRILRP~G~~ii 479 (527)
+...++-|+-|+|||||+++|
T Consensus 75 -----~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 75 -----DPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp -----HHHHHHHHHHHHEEEEEEEEE
T ss_pred -----CHHHHHHHHHHHcCcCeEEeC
Confidence 357899999999999999986
No 35
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=98.16 E-value=2.5e-06 Score=82.37 Aligned_cols=72 Identities=21% Similarity=0.307 Sum_probs=57.2
Q ss_pred cCcChHHHHHHHHHc----CCC--cEEeeccccCCCCCCCcccEEEecCcccccccChHHHHHHHhhcccCCcEEEEecC
Q 009719 162 PRDSHKAQIQFALER----GIP--AFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 235 (527)
Q Consensus 162 p~D~seaqvq~A~eR----g~p--a~~~v~dae~LPFpD~SFDlV~cs~~l~hw~d~~~~aL~Ei~RVLRPGG~lviS~p 235 (527)
..|.++.|++.|+++ |.. ..+...|....|++ ++||+|++..+++|+.+... +|.++.|+|||||+++++.+
T Consensus 28 gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l~~~~~~~~-~l~~~~~~LkpgG~l~i~~~ 105 (224)
T smart00828 28 GYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFEVIHHIKDKMD-LFSNISRHLKDGGHLVLADF 105 (224)
T ss_pred EEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCC-CCCCEeehHHHHHhCCCHHH-HHHHHHHHcCCCCEEEEEEc
Confidence 336688888888765 332 35666777677886 48999999999998877555 99999999999999999875
No 36
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=98.12 E-value=4e-06 Score=87.19 Aligned_cols=88 Identities=19% Similarity=0.118 Sum_probs=61.8
Q ss_pred hhcccccc----ccCCee-EEeeccCcChHHHHHHHH---Hc-C--CCcEEeeccccCCCCCCCcccEEEecCccccccc
Q 009719 143 VASFGGSM----LSENIL-TLSFAPRDSHKAQIQFAL---ER-G--IPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTA 211 (527)
Q Consensus 143 vgsfga~L----l~r~V~-~msiAp~D~seaqvq~A~---eR-g--~pa~~~v~dae~LPFpD~SFDlV~cs~~l~hw~d 211 (527)
+|+..|++ +..+.. ++.+ |.++.|++.+. +. + ..+.+..++.+.+|+. ++||+|+|..+++|+.+
T Consensus 128 vGCG~G~~~~~~~~~g~~~v~Gi---DpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~-~~FD~V~s~gvL~H~~d 203 (314)
T TIGR00452 128 VGCGSGYHMWRMLGHGAKSLVGI---DPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL-YAFDTVFSMGVLYHRKS 203 (314)
T ss_pred eccCCcHHHHHHHHcCCCEEEEE---cCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC-CCcCEEEEcchhhccCC
Confidence 56655554 344542 3344 66666665432 21 1 2345566788889875 48999999999999877
Q ss_pred ChHHHHHHHhhcccCCcEEEEecC
Q 009719 212 YNATYLIEVDRLLRPGGYLVISGP 235 (527)
Q Consensus 212 ~~~~aL~Ei~RVLRPGG~lviS~p 235 (527)
... +|+|+.|+|||||.|++++.
T Consensus 204 p~~-~L~el~r~LkpGG~Lvletl 226 (314)
T TIGR00452 204 PLE-HLKQLKHQLVIKGELVLETL 226 (314)
T ss_pred HHH-HHHHHHHhcCCCCEEEEEEE
Confidence 665 99999999999999999754
No 37
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=98.11 E-value=4.1e-06 Score=83.22 Aligned_cols=74 Identities=22% Similarity=0.187 Sum_probs=58.5
Q ss_pred eccCcChHHHHHHHHHc----CC--CcEEeeccccCCCCCCCcccEEEecCcccccccCh-HHHHHHHhhcccCCcEEEE
Q 009719 160 FAPRDSHKAQIQFALER----GI--PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYN-ATYLIEVDRLLRPGGYLVI 232 (527)
Q Consensus 160 iAp~D~seaqvq~A~eR----g~--pa~~~v~dae~LPFpD~SFDlV~cs~~l~hw~d~~-~~aL~Ei~RVLRPGG~lvi 232 (527)
+...|.++.|++.|+++ +. ...+.++++..+|+++ ||+|+|+.+++|+.+.. ..++.|+.|+|||||.|++
T Consensus 85 v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~--~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l 162 (247)
T PRK15451 85 IIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIEN--ASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVL 162 (247)
T ss_pred EEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCC--CCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence 33347888999999876 23 3566778888888864 99999999988876543 3599999999999999999
Q ss_pred ecC
Q 009719 233 SGP 235 (527)
Q Consensus 233 S~p 235 (527)
+..
T Consensus 163 ~e~ 165 (247)
T PRK15451 163 SEK 165 (247)
T ss_pred EEe
Confidence 874
No 38
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=98.10 E-value=4.7e-06 Score=71.24 Aligned_cols=89 Identities=24% Similarity=0.255 Sum_probs=61.6
Q ss_pred hhcccccccc--CCeeEEeeccCcChHHHHHHHHHcC------CCcEEeeccc-cCCCCCCCcccEEEecC-ccccccc-
Q 009719 143 VASFGGSMLS--ENILTLSFAPRDSHKAQIQFALERG------IPAFVAMLGT-RRLPFPAFSFDIVHCSR-CLIPFTA- 211 (527)
Q Consensus 143 vgsfga~Ll~--r~V~~msiAp~D~seaqvq~A~eRg------~pa~~~v~da-e~LPFpD~SFDlV~cs~-~l~hw~d- 211 (527)
.|.++.+|.. .+..+..+ |.++.+++.|+++. ....+..+|. ....+. ..||+|+|.. +++++..
T Consensus 12 ~G~~~~~l~~~~~~~~v~gv---D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~-~~~D~v~~~~~~~~~~~~~ 87 (112)
T PF12847_consen 12 TGRLSIALARLFPGARVVGV---DISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFL-EPFDLVICSGFTLHFLLPL 87 (112)
T ss_dssp TSHHHHHHHHHHTTSEEEEE---ESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTS-SCEEEEEECSGSGGGCCHH
T ss_pred CCHHHHHHHhcCCCCEEEEE---eCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccC-CCCCEEEECCCccccccch
Confidence 3455555666 56654455 77888998888663 2356777787 344444 4599999998 5554443
Q ss_pred -ChHHHHHHHhhcccCCcEEEEecC
Q 009719 212 -YNATYLIEVDRLLRPGGYLVISGP 235 (527)
Q Consensus 212 -~~~~aL~Ei~RVLRPGG~lviS~p 235 (527)
....+|.++.+.|||||+|+++++
T Consensus 88 ~~~~~~l~~~~~~L~pgG~lvi~~~ 112 (112)
T PF12847_consen 88 DERRRVLERIRRLLKPGGRLVINTC 112 (112)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEE-
T ss_pred hHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 234589999999999999999864
No 39
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=98.09 E-value=6.8e-07 Score=75.54 Aligned_cols=85 Identities=27% Similarity=0.282 Sum_probs=41.1
Q ss_pred hccccccccCCeeEEeeccCcChHHHHHHHHHc----CC-CcEEeeccccCCC--CCCCcccEEEecCcccccccChHHH
Q 009719 144 ASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRRLP--FPAFSFDIVHCSRCLIPFTAYNATY 216 (527)
Q Consensus 144 gsfga~Ll~r~V~~msiAp~D~seaqvq~A~eR----g~-pa~~~v~dae~LP--FpD~SFDlV~cs~~l~hw~d~~~~a 216 (527)
|.+..+|++.. ....+...|.|+.|++.|++| +. ...........+. .+.++||+|+++.+++|+.+. ..+
T Consensus 8 G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~~~-~~~ 85 (99)
T PF08242_consen 8 GRLLRALLEEL-PDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHLEDI-EAV 85 (99)
T ss_dssp S-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--S-H-HHH
T ss_pred hHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhhhhH-HHH
Confidence 44455555542 222333446666677555544 21 1222222322221 223699999999999888444 459
Q ss_pred HHHHhhcccCCcEE
Q 009719 217 LIEVDRLLRPGGYL 230 (527)
Q Consensus 217 L~Ei~RVLRPGG~l 230 (527)
|+.+.++|||||.|
T Consensus 86 l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 86 LRNIYRLLKPGGIL 99 (99)
T ss_dssp HHHHTTT-TSS-EE
T ss_pred HHHHHHHcCCCCCC
Confidence 99999999999986
No 40
>PRK06922 hypothetical protein; Provisional
Probab=98.09 E-value=2.5e-06 Score=95.94 Aligned_cols=77 Identities=21% Similarity=0.164 Sum_probs=60.6
Q ss_pred eeccCcChHHHHHHHHHc----CCCcEEeeccccCCC--CCCCcccEEEecCccccccc------------ChHHHHHHH
Q 009719 159 SFAPRDSHKAQIQFALER----GIPAFVAMLGTRRLP--FPAFSFDIVHCSRCLIPFTA------------YNATYLIEV 220 (527)
Q Consensus 159 siAp~D~seaqvq~A~eR----g~pa~~~v~dae~LP--FpD~SFDlV~cs~~l~hw~d------------~~~~aL~Ei 220 (527)
.+...|.++.|++.|+++ +....+..+|+..|| |++++||+|+++.+++||.+ +...+|+|+
T Consensus 444 kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI 523 (677)
T PRK06922 444 RIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSA 523 (677)
T ss_pred EEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHH
Confidence 344448888999988765 334556678888898 89999999999998877632 224599999
Q ss_pred hhcccCCcEEEEecC
Q 009719 221 DRLLRPGGYLVISGP 235 (527)
Q Consensus 221 ~RVLRPGG~lviS~p 235 (527)
.|+|||||++++...
T Consensus 524 ~RVLKPGGrLII~D~ 538 (677)
T PRK06922 524 YEVLKPGGRIIIRDG 538 (677)
T ss_pred HHHcCCCcEEEEEeC
Confidence 999999999999864
No 41
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.05 E-value=6e-06 Score=78.44 Aligned_cols=74 Identities=28% Similarity=0.287 Sum_probs=59.4
Q ss_pred ccCcChHHHHHHHHHcCC---CcEEeeccccCCCCCCCcccEEEecCcccccccChHHHHHHHhhcccCCcEEEEecC
Q 009719 161 APRDSHKAQIQFALERGI---PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 235 (527)
Q Consensus 161 Ap~D~seaqvq~A~eRg~---pa~~~v~dae~LPFpD~SFDlV~cs~~l~hw~d~~~~aL~Ei~RVLRPGG~lviS~p 235 (527)
...|.++.+++.+.++.. ...+..++...+|+++++||+|+++..++|..+... +|+++.++|||||++++...
T Consensus 68 ~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~~~~~-~l~~~~~~L~~gG~l~~~~~ 144 (223)
T TIGR01934 68 TGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFDAVTIAFGLRNVTDIQK-ALREMYRVLKPGGRLVILEF 144 (223)
T ss_pred EEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEEEEEEeeeeCCcccHHH-HHHHHHHHcCCCcEEEEEEe
Confidence 333667788888877642 355667888889999999999999999877776555 99999999999999998664
No 42
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=98.04 E-value=8.1e-06 Score=79.51 Aligned_cols=73 Identities=18% Similarity=0.093 Sum_probs=58.5
Q ss_pred eeccCcChHHHHHHHHHcCCCcEEeeccccCCCCCCCcccEEEecCcccccccC-hHHHHHHHhhcccCCcEEEEec
Q 009719 159 SFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAY-NATYLIEVDRLLRPGGYLVISG 234 (527)
Q Consensus 159 siAp~D~seaqvq~A~eRg~pa~~~v~dae~LPFpD~SFDlV~cs~~l~hw~d~-~~~aL~Ei~RVLRPGG~lviS~ 234 (527)
.+...|.++.+++.|+++.....+.++++.. ||++++||+|+|..+++|+... ...+++|+.|++ +++++++.
T Consensus 69 ~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~-~~~~~sfD~V~~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e 142 (204)
T TIGR03587 69 HIYGVEINEYAVEKAKAYLPNINIIQGSLFD-PFKDNFFDLVLTKGVLIHINPDNLPTAYRELYRCS--NRYILIAE 142 (204)
T ss_pred eEEEEECCHHHHHHHHhhCCCCcEEEeeccC-CCCCCCEEEEEECChhhhCCHHHHHHHHHHHHhhc--CcEEEEEE
Confidence 4555588999999998865445666778777 9999999999999999998633 245999999998 67888865
No 43
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=98.03 E-value=6.4e-06 Score=75.28 Aligned_cols=71 Identities=32% Similarity=0.488 Sum_probs=60.4
Q ss_pred CcChHHHHHHHHHc----CCC-cEEeeccccCCC--CCCCcccEEEecCcccccccChHHHHHHHhhcccCCcEEEEecC
Q 009719 163 RDSHKAQIQFALER----GIP-AFVAMLGTRRLP--FPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 235 (527)
Q Consensus 163 ~D~seaqvq~A~eR----g~p-a~~~v~dae~LP--FpD~SFDlV~cs~~l~hw~d~~~~aL~Ei~RVLRPGG~lviS~p 235 (527)
.|.++.|++.|+++ +.+ ..+.++|...++ |+ +.||+|++..+++|+.+... +|.++.|+|+|||.++++.+
T Consensus 34 vD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~~~l~~~~~~~~-~l~~~~~~lk~~G~~i~~~~ 111 (152)
T PF13847_consen 34 VDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISNGVLHHFPDPEK-VLKNIIRLLKPGGILIISDP 111 (152)
T ss_dssp EESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEESTGGGTSHHHH-HHHHHHHHEEEEEEEEEEEE
T ss_pred EECcHHHHHHhhcccccccccccceEEeehhccccccC-CCeeEEEEcCchhhccCHHH-HHHHHHHHcCCCcEEEEEEC
Confidence 38889999999873 565 678889988888 88 99999999998877665555 99999999999999999876
No 44
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=98.02 E-value=8.8e-06 Score=82.67 Aligned_cols=86 Identities=10% Similarity=0.122 Sum_probs=61.1
Q ss_pred hccccccccCCeeEEeeccCcChHHHHHHHHH----cCCCcEEeeccccCCCCCCCcccEEEecCcccccccC-hHHHHH
Q 009719 144 ASFGGSMLSENILTLSFAPRDSHKAQIQFALE----RGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAY-NATYLI 218 (527)
Q Consensus 144 gsfga~Ll~r~V~~msiAp~D~seaqvq~A~e----Rg~pa~~~v~dae~LPFpD~SFDlV~cs~~l~hw~d~-~~~aL~ 218 (527)
|..+.+|..+|..+. ..|.++.+++.|++ .++...+...|....++ +++||+|+|..+++|.... ...++.
T Consensus 132 G~~~~~la~~g~~V~---avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~-~~~fD~I~~~~vl~~l~~~~~~~~l~ 207 (287)
T PRK12335 132 GRNSLYLALLGFDVT---AVDINQQSLENLQEIAEKENLNIRTGLYDINSASI-QEEYDFILSTVVLMFLNRERIPAIIK 207 (287)
T ss_pred CHHHHHHHHCCCEEE---EEECCHHHHHHHHHHHHHcCCceEEEEechhcccc-cCCccEEEEcchhhhCCHHHHHHHHH
Confidence 344445666665433 34788888887754 35655666677766666 7899999999988776532 235999
Q ss_pred HHhhcccCCcEEEEe
Q 009719 219 EVDRLLRPGGYLVIS 233 (527)
Q Consensus 219 Ei~RVLRPGG~lviS 233 (527)
++.|+|||||++++.
T Consensus 208 ~~~~~LkpgG~~l~v 222 (287)
T PRK12335 208 NMQEHTNPGGYNLIV 222 (287)
T ss_pred HHHHhcCCCcEEEEE
Confidence 999999999997663
No 45
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=97.99 E-value=2.7e-05 Score=75.22 Aligned_cols=151 Identities=18% Similarity=0.278 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHHhhhccCCCCeeeEeecCCCccchhhhccC--CCeeEEEecCCCCCCch----hHhhhccc--ccccc
Q 009719 352 RRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTS--DPVWVMNVVPARKSSTL----SVIYDRGL--IGVYH 423 (527)
Q Consensus 352 ~~W~~~v~~Y~~~l~~~i~~~~iRnvmDm~ag~GgFaAaL~~--~~VwvMnvvp~~~~ntl----~vi~eRGL--iG~~h 423 (527)
+.|++++-.=.. +.+.+..+ ..|+|+|||.|.++.++.. ...-|.-+=+.. .-+ +.+-+.|+ +-+++
T Consensus 27 ~~~~~~~~d~l~-l~~~l~~g--~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~--~~l~~A~~~~~~~~l~~i~~~~ 101 (187)
T PRK00107 27 ELWERHILDSLA-IAPYLPGG--ERVLDVGSGAGFPGIPLAIARPELKVTLVDSLG--KKIAFLREVAAELGLKNVTVVH 101 (187)
T ss_pred HHHHHHHHHHHH-HHhhcCCC--CeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcH--HHHHHHHHHHHHcCCCCEEEEe
Confidence 388888744232 12233332 4799999999988776642 223233332221 211 22333444 33343
Q ss_pred ccCCCCCCCCCccchhhhcCccccccCCCCCCCCCcccccceeecccccCCcEEEEeCCHHHHHHHHHHHhcCCceeEEe
Q 009719 424 DWCEPFSTYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRIANTVRWTAAVH 503 (527)
Q Consensus 424 dwce~fstYPrtyDLiHa~~~fs~~~~~~~~~~rC~~~~illEmDRILRP~G~~iird~~~~~~~i~~i~~~l~W~~~~~ 503 (527)
.-.+.+.. ..+||+|-+.. + ..+.+++-++-|+|||||.+++-+.......++.+++.+-|.+...
T Consensus 102 ~d~~~~~~-~~~fDlV~~~~-~------------~~~~~~l~~~~~~LkpGG~lv~~~~~~~~~~l~~~~~~~~~~~~~~ 167 (187)
T PRK00107 102 GRAEEFGQ-EEKFDVVTSRA-V------------ASLSDLVELCLPLLKPGGRFLALKGRDPEEEIAELPKALGGKVEEV 167 (187)
T ss_pred ccHhhCCC-CCCccEEEEcc-c------------cCHHHHHHHHHHhcCCCeEEEEEeCCChHHHHHHHHHhcCceEeee
Confidence 33334433 56899998753 1 2356788899999999999999988888889999999999986432
Q ss_pred -c-CCCCCCCCceEEEEEec
Q 009719 504 -D-KEPGSNGREKILVATKS 521 (527)
Q Consensus 504 -~-~e~~~~~~ekiLi~~K~ 521 (527)
. +-+|-+++..+.|.+|+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~ 187 (187)
T PRK00107 168 IELTLPGLDGERHLVIIRKK 187 (187)
T ss_pred EEEecCCCCCcEEEEEEecC
Confidence 2 22344455567777775
No 46
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=97.96 E-value=8.8e-06 Score=81.83 Aligned_cols=118 Identities=16% Similarity=0.263 Sum_probs=73.4
Q ss_pred eccCcChHHHHHHHHHcCCCcE-----EeeccccCCCCC--CCcccEEEecCcccccccChHHHHHHHhhcccCCc-EEE
Q 009719 160 FAPRDSHKAQIQFALERGIPAF-----VAMLGTRRLPFP--AFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGG-YLV 231 (527)
Q Consensus 160 iAp~D~seaqvq~A~eRg~pa~-----~~v~dae~LPFp--D~SFDlV~cs~~l~hw~d~~~~aL~Ei~RVLRPGG-~lv 231 (527)
+...|.+++|+++|.+.- +.. ....+.+-.++- ++|.|+|+|+.|+ ||.+... +++++.||||+.| .+.
T Consensus 58 VIatD~s~~mL~~a~k~~-~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~-HWFdle~-fy~~~~rvLRk~Gg~ia 134 (261)
T KOG3010|consen 58 VIATDVSEAMLKVAKKHP-PVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAV-HWFDLER-FYKEAYRVLRKDGGLIA 134 (261)
T ss_pred heeecCCHHHHHHhhcCC-CcccccCCccccccccccccCCCcceeeehhhhhH-HhhchHH-HHHHHHHHcCCCCCEEE
Confidence 344588999999997642 221 122233444554 9999999999996 9999887 9999999999866 666
Q ss_pred EecCCCCCCCchhHHHHHHHHHHhcceEEeeeecceEEEeCCCccccccccCCCCCCCCCC
Q 009719 232 ISGPPVQWPKQDKEWADLQAVARALCYELIAVDGNTVIWKKPVGESCLSNQNEFGLELCDE 292 (527)
Q Consensus 232 iS~pp~~~~~~~~~w~~i~~l~~~mcW~~~~~~~~v~iwrKp~~~~c~~~~~~~~p~~C~~ 292 (527)
+-...-+ --.|-+.-.+-.+++|+ ...+|+-|+-+.-... ....++|-.
T Consensus 135 vW~Y~dd----~v~~pE~dsv~~r~~~~------~~p~~r~~~~n~~fdg--y~~~~F~~e 183 (261)
T KOG3010|consen 135 VWNYNDD----FVDWPEFDSVMLRLYDS------TLPYWRSPLRNLLFDG--YKTIEFPFE 183 (261)
T ss_pred EEEccCC----CcCCHHHHHHHHHHhhc------cCchhhhHHHHhhccc--ccccccccc
Confidence 6543211 11233444455555665 3445566665433322 223556653
No 47
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=97.94 E-value=1.2e-05 Score=77.16 Aligned_cols=74 Identities=28% Similarity=0.280 Sum_probs=59.6
Q ss_pred ccCcChHHHHHHHHHcC------CCcEEeeccccCCCCCCCcccEEEecCcccccccChHHHHHHHhhcccCCcEEEEec
Q 009719 161 APRDSHKAQIQFALERG------IPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISG 234 (527)
Q Consensus 161 Ap~D~seaqvq~A~eRg------~pa~~~v~dae~LPFpD~SFDlV~cs~~l~hw~d~~~~aL~Ei~RVLRPGG~lviS~ 234 (527)
...|.++.+++.|.++. ....+..++...+++++++||+|+++.+++|+.+... .|.++.++|+|||++++..
T Consensus 80 ~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~~l~~~~~~~~-~l~~~~~~L~~gG~li~~~ 158 (239)
T PRK00216 80 VGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFGLRNVPDIDK-ALREMYRVLKPGGRLVILE 158 (239)
T ss_pred EEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEecccccCCCHHH-HHHHHHHhccCCcEEEEEE
Confidence 33366778888887652 2356677888889999999999999999988877665 9999999999999999876
Q ss_pred C
Q 009719 235 P 235 (527)
Q Consensus 235 p 235 (527)
.
T Consensus 159 ~ 159 (239)
T PRK00216 159 F 159 (239)
T ss_pred e
Confidence 4
No 48
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=97.91 E-value=6.6e-07 Score=80.41 Aligned_cols=96 Identities=21% Similarity=0.297 Sum_probs=64.6
Q ss_pred CCeeeEeecCCCccchhhhccCCCeeEEEecCCCCC-CchhHhhhccccccccccCCCCCCCCCccchhhhcCccccccC
Q 009719 372 PAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGLIGVYHDWCEPFSTYPRTYDLIHVSGIESLIKN 450 (527)
Q Consensus 372 ~~iRnvmDm~ag~GgFaAaL~~~~VwvMnvvp~~~~-ntl~vi~eRGLiG~~hdwce~fstYPrtyDLiHa~~~fs~~~~ 450 (527)
..-.+|||+|||.|.|+..|.+.+.-+ +-.|.. ..+.. +-....-++-.+.. -.+++||+|.|..+|....
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~~~~~---~g~D~~~~~~~~---~~~~~~~~~~~~~~-~~~~~fD~i~~~~~l~~~~- 92 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALAKRGFEV---TGVDISPQMIEK---RNVVFDNFDAQDPP-FPDGSFDLIICNDVLEHLP- 92 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHHHTTSEE---EEEESSHHHHHH---TTSEEEEEECHTHH-CHSSSEEEEEEESSGGGSS-
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCCEE---EEEECCHHHHhh---hhhhhhhhhhhhhh-ccccchhhHhhHHHHhhcc-
Confidence 345699999999999999998887633 333322 22222 21222111111110 1248999999999998663
Q ss_pred CCCCCCCCcccccceeecccccCCcEEEEeCCH
Q 009719 451 PGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP 483 (527)
Q Consensus 451 ~~~~~~rC~~~~illEmDRILRP~G~~iird~~ 483 (527)
+...+|-+|=|+|+|||++++.+..
T Consensus 93 --------d~~~~l~~l~~~LkpgG~l~~~~~~ 117 (161)
T PF13489_consen 93 --------DPEEFLKELSRLLKPGGYLVISDPN 117 (161)
T ss_dssp --------HHHHHHHHHHHCEEEEEEEEEEEEB
T ss_pred --------cHHHHHHHHHHhcCCCCEEEEEEcC
Confidence 4688999999999999999999743
No 49
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=97.86 E-value=2.3e-05 Score=83.42 Aligned_cols=87 Identities=20% Similarity=0.228 Sum_probs=62.4
Q ss_pred hhccccccccC-CeeEEeeccCcChHHHHHHHHHcC--CCcEEeeccccCCCCCCCcccEEEecCcccccccCh-HHHHH
Q 009719 143 VASFGGSMLSE-NILTLSFAPRDSHKAQIQFALERG--IPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYN-ATYLI 218 (527)
Q Consensus 143 vgsfga~Ll~r-~V~~msiAp~D~seaqvq~A~eRg--~pa~~~v~dae~LPFpD~SFDlV~cs~~l~hw~d~~-~~aL~ 218 (527)
.|.++.++..+ +..+ ...|.+++|++.|+++. ..+.+...|...+ +++||.|++..+++|..... ..++.
T Consensus 178 ~G~~a~~la~~~g~~V---~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l---~~~fD~Ivs~~~~ehvg~~~~~~~l~ 251 (383)
T PRK11705 178 WGGLARYAAEHYGVSV---VGVTISAEQQKLAQERCAGLPVEIRLQDYRDL---NGQFDRIVSVGMFEHVGPKNYRTYFE 251 (383)
T ss_pred ccHHHHHHHHHCCCEE---EEEeCCHHHHHHHHHHhccCeEEEEECchhhc---CCCCCEEEEeCchhhCChHHHHHHHH
Confidence 34455555443 4433 33377899999998863 3445555666555 58999999999988875432 34999
Q ss_pred HHhhcccCCcEEEEecC
Q 009719 219 EVDRLLRPGGYLVISGP 235 (527)
Q Consensus 219 Ei~RVLRPGG~lviS~p 235 (527)
++.|+|||||+++++..
T Consensus 252 ~i~r~LkpGG~lvl~~i 268 (383)
T PRK11705 252 VVRRCLKPDGLFLLHTI 268 (383)
T ss_pred HHHHHcCCCcEEEEEEc
Confidence 99999999999999764
No 50
>PRK06202 hypothetical protein; Provisional
Probab=97.83 E-value=3.5e-05 Score=75.39 Aligned_cols=74 Identities=15% Similarity=0.135 Sum_probs=57.2
Q ss_pred eeccCcChHHHHHHHHHcCC--CcEEeeccccCCCCCCCcccEEEecCcccccccCh-HHHHHHHhhcccCCcEEEEec
Q 009719 159 SFAPRDSHKAQIQFALERGI--PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYN-ATYLIEVDRLLRPGGYLVISG 234 (527)
Q Consensus 159 siAp~D~seaqvq~A~eRg~--pa~~~v~dae~LPFpD~SFDlV~cs~~l~hw~d~~-~~aL~Ei~RVLRPGG~lviS~ 234 (527)
.+...|.++.|++.|+++.. ...+.+.++..+|+++++||+|+|+.+++|+.+.. ..+|+|+.|++| |.+++..
T Consensus 90 ~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~d 166 (232)
T PRK06202 90 EVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHFLHHLDDAEVVRLLADSAALAR--RLVLHND 166 (232)
T ss_pred EEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCeeecCChHHHHHHHHHHHHhcC--eeEEEec
Confidence 34455889999999987632 24455567778899999999999999999987653 359999999999 5555554
No 51
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=97.81 E-value=3.2e-05 Score=75.21 Aligned_cols=89 Identities=19% Similarity=0.237 Sum_probs=64.3
Q ss_pred hccccccccCCeeEEeeccCcChHHHHHHHHHc----CCCcEEeeccccCCC-CCCCcccEEEecCcccccccChHHHHH
Q 009719 144 ASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIPAFVAMLGTRRLP-FPAFSFDIVHCSRCLIPFTAYNATYLI 218 (527)
Q Consensus 144 gsfga~Ll~r~V~~msiAp~D~seaqvq~A~eR----g~pa~~~v~dae~LP-FpD~SFDlV~cs~~l~hw~d~~~~aL~ 218 (527)
|.++..+...+.. +...|.++.+++.|.++ +....+...+...++ ..++.||+|+|+.++.|..+... +|.
T Consensus 60 G~~~~~l~~~~~~---v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~~~~~~~~-~l~ 135 (233)
T PRK05134 60 GILSESMARLGAD---VTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLEHVPDPAS-FVR 135 (233)
T ss_pred CHHHHHHHHcCCe---EEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHhhccCCHHH-HHH
Confidence 4444455555543 33346777888887764 344455566666665 45689999999999988876655 999
Q ss_pred HHhhcccCCcEEEEecCC
Q 009719 219 EVDRLLRPGGYLVISGPP 236 (527)
Q Consensus 219 Ei~RVLRPGG~lviS~pp 236 (527)
++.++|+|||+++++.+.
T Consensus 136 ~~~~~L~~gG~l~v~~~~ 153 (233)
T PRK05134 136 ACAKLVKPGGLVFFSTLN 153 (233)
T ss_pred HHHHHcCCCcEEEEEecC
Confidence 999999999999998763
No 52
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=97.75 E-value=3.4e-05 Score=74.64 Aligned_cols=75 Identities=23% Similarity=0.302 Sum_probs=56.1
Q ss_pred eccCcChHHHHHHHHHc----CC-CcEEeeccc-cCCC--CCCCcccEEEecCcccccccC--------hHHHHHHHhhc
Q 009719 160 FAPRDSHKAQIQFALER----GI-PAFVAMLGT-RRLP--FPAFSFDIVHCSRCLIPFTAY--------NATYLIEVDRL 223 (527)
Q Consensus 160 iAp~D~seaqvq~A~eR----g~-pa~~~v~da-e~LP--FpD~SFDlV~cs~~l~hw~d~--------~~~aL~Ei~RV 223 (527)
+...|.++.+++.|.++ +. .+.+.++|+ +.++ +++++||+|++..+. +|... ...+|.++.|+
T Consensus 67 v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~~~-p~~~~~~~~~~~~~~~~l~~i~~~ 145 (202)
T PRK00121 67 FIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNFPD-PWPKKRHHKRRLVQPEFLALYARK 145 (202)
T ss_pred EEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEECCC-CCCCccccccccCCHHHHHHHHHH
Confidence 33446677888877653 33 356777888 8888 889999999987654 45321 23489999999
Q ss_pred ccCCcEEEEecC
Q 009719 224 LRPGGYLVISGP 235 (527)
Q Consensus 224 LRPGG~lviS~p 235 (527)
|||||+|+++.+
T Consensus 146 LkpgG~l~i~~~ 157 (202)
T PRK00121 146 LKPGGEIHFATD 157 (202)
T ss_pred cCCCCEEEEEcC
Confidence 999999999876
No 53
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=97.73 E-value=2.4e-05 Score=77.16 Aligned_cols=100 Identities=17% Similarity=0.140 Sum_probs=63.0
Q ss_pred cCCCCeeeEeecCCCccchhhhccCCCeeEEEecCCCC-CCchhHhhhccc-ccc-ccccCCCCCCCCCccchhhhcCcc
Q 009719 369 LGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARK-SSTLSVIYDRGL-IGV-YHDWCEPFSTYPRTYDLIHVSGIE 445 (527)
Q Consensus 369 i~~~~iRnvmDm~ag~GgFaAaL~~~~VwvMnvvp~~~-~ntl~vi~eRGL-iG~-~hdwce~fstYPrtyDLiHa~~~f 445 (527)
+......+|||+|||.|.++..|..... .|+-.|- +..+..+-+++- +.. ..|. |.++....+||+|-++..+
T Consensus 38 l~~~~~~~vLDiGcG~G~~~~~l~~~~~---~v~~~D~s~~~l~~a~~~~~~~~~~~~d~-~~~~~~~~~fD~V~s~~~l 113 (251)
T PRK10258 38 LPQRKFTHVLDAGCGPGWMSRYWRERGS---QVTALDLSPPMLAQARQKDAADHYLAGDI-ESLPLATATFDLAWSNLAV 113 (251)
T ss_pred cCccCCCeEEEeeCCCCHHHHHHHHcCC---eEEEEECCHHHHHHHHhhCCCCCEEEcCc-ccCcCCCCcEEEEEECchh
Confidence 3334567899999999999988866542 2222232 244454544432 111 1222 3333334799999887555
Q ss_pred ccccCCCCCCCCCcccccceeecccccCCcEEEEeC
Q 009719 446 SLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 481 (527)
Q Consensus 446 s~~~~~~~~~~rC~~~~illEmDRILRP~G~~iird 481 (527)
. |. -+...+|-||-|+|+|||.+++..
T Consensus 114 ~-~~--------~d~~~~l~~~~~~Lk~gG~l~~~~ 140 (251)
T PRK10258 114 Q-WC--------GNLSTALRELYRVVRPGGVVAFTT 140 (251)
T ss_pred h-hc--------CCHHHHHHHHHHHcCCCeEEEEEe
Confidence 3 32 135688999999999999999984
No 54
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=97.73 E-value=2.6e-05 Score=76.10 Aligned_cols=87 Identities=21% Similarity=0.308 Sum_probs=67.5
Q ss_pred hcccccccc-CCeeEEeeccCcChHHHHHHHHHcCCCcEEeeccc-cCCC-CCCCcccEEEecCcccccccChHHHHHHH
Q 009719 144 ASFGGSMLS-ENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGT-RRLP-FPAFSFDIVHCSRCLIPFTAYNATYLIEV 220 (527)
Q Consensus 144 gsfga~Ll~-r~V~~msiAp~D~seaqvq~A~eRg~pa~~~v~da-e~LP-FpD~SFDlV~cs~~l~hw~d~~~~aL~Ei 220 (527)
|.+-++|.+ +++.+..+ +.+++.+..+.+||+++. ++|. +.|+ |+|+|||.|+++.++.+..++.. +|.||
T Consensus 25 G~LL~~L~~~k~v~g~Gv---Eid~~~v~~cv~rGv~Vi--q~Dld~gL~~f~d~sFD~VIlsqtLQ~~~~P~~-vL~Em 98 (193)
T PF07021_consen 25 GELLAYLKDEKQVDGYGV---EIDPDNVAACVARGVSVI--QGDLDEGLADFPDQSFDYVILSQTLQAVRRPDE-VLEEM 98 (193)
T ss_pred hHHHHHHHHhcCCeEEEE---ecCHHHHHHHHHcCCCEE--ECCHHHhHhhCCCCCccEEehHhHHHhHhHHHH-HHHHH
Confidence 444445544 67777666 667888999999998744 4453 4575 99999999999999999987776 99999
Q ss_pred hhcccCCcEEEEecCCC-CC
Q 009719 221 DRLLRPGGYLVISGPPV-QW 239 (527)
Q Consensus 221 ~RVLRPGG~lviS~pp~-~~ 239 (527)
.|| |...++|-|+. +|
T Consensus 99 lRV---gr~~IVsFPNFg~W 115 (193)
T PF07021_consen 99 LRV---GRRAIVSFPNFGHW 115 (193)
T ss_pred HHh---cCeEEEEecChHHH
Confidence 888 77999999853 44
No 55
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=97.73 E-value=5e-05 Score=73.06 Aligned_cols=86 Identities=22% Similarity=0.267 Sum_probs=62.5
Q ss_pred cccccccCCeeEEeeccCcChHHHHHHHHHc----CC-CcEEeeccccCCCCC-CCcccEEEecCcccccccChHHHHHH
Q 009719 146 FGGSMLSENILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRRLPFP-AFSFDIVHCSRCLIPFTAYNATYLIE 219 (527)
Q Consensus 146 fga~Ll~r~V~~msiAp~D~seaqvq~A~eR----g~-pa~~~v~dae~LPFp-D~SFDlV~cs~~l~hw~d~~~~aL~E 219 (527)
++..+...+.. +...|.++.+++.|+++ +. ...+..++.+.++.. .++||+|+|..+++|..+... +|.+
T Consensus 59 ~~~~l~~~~~~---v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~~~~~~~~-~l~~ 134 (224)
T TIGR01983 59 LSEPLARLGAN---VTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVLEHVPDPQA-FIRA 134 (224)
T ss_pred HHHHHHhcCCe---EEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHHHhCCCHHH-HHHH
Confidence 33344444433 33346778888877664 33 356666777777765 489999999999888766555 9999
Q ss_pred HhhcccCCcEEEEecC
Q 009719 220 VDRLLRPGGYLVISGP 235 (527)
Q Consensus 220 i~RVLRPGG~lviS~p 235 (527)
+.++|+|||+++++++
T Consensus 135 ~~~~L~~gG~l~i~~~ 150 (224)
T TIGR01983 135 CAQLLKPGGILFFSTI 150 (224)
T ss_pred HHHhcCCCcEEEEEec
Confidence 9999999999999876
No 56
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=97.67 E-value=0.00021 Score=69.07 Aligned_cols=90 Identities=19% Similarity=0.197 Sum_probs=63.9
Q ss_pred eccCcChHHHHHHHHHc----CCC-cEEeeccccCCCCCCCcccEEEecCcccccccChHHHHHHHhhcccCCcEEEEec
Q 009719 160 FAPRDSHKAQIQFALER----GIP-AFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISG 234 (527)
Q Consensus 160 iAp~D~seaqvq~A~eR----g~p-a~~~v~dae~LPFpD~SFDlV~cs~~l~hw~d~~~~aL~Ei~RVLRPGG~lviS~ 234 (527)
+...|.++.|++.|+++ +++ ..+..++++.++. +++||+|+|.. + .+.. .++.++.|+|||||+|++..
T Consensus 72 V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~-~---~~~~-~~l~~~~~~LkpGG~lv~~~ 145 (187)
T PRK00107 72 VTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRA-V---ASLS-DLVELCLPLLKPGGRFLALK 145 (187)
T ss_pred EEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-CCCccEEEEcc-c---cCHH-HHHHHHHHhcCCCeEEEEEe
Confidence 33337778888777643 443 5667788888887 78999999864 2 2223 49999999999999999986
Q ss_pred CCCCCCCchhHHHHHHHHHHhcceEEee
Q 009719 235 PPVQWPKQDKEWADLQAVARALCYELIA 262 (527)
Q Consensus 235 pp~~~~~~~~~w~~i~~l~~~mcW~~~~ 262 (527)
.+.. -.+++++++.+-|.+..
T Consensus 146 ~~~~-------~~~l~~~~~~~~~~~~~ 166 (187)
T PRK00107 146 GRDP-------EEEIAELPKALGGKVEE 166 (187)
T ss_pred CCCh-------HHHHHHHHHhcCceEee
Confidence 5311 13577788888887543
No 57
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=97.66 E-value=5.7e-05 Score=77.08 Aligned_cols=86 Identities=23% Similarity=0.333 Sum_probs=59.5
Q ss_pred hhccccccccC-CeeEEeeccCcChHHHHHHHHHc----CCC--cEEeeccccCCCCCCCcccEEEecCcccccccCh-H
Q 009719 143 VASFGGSMLSE-NILTLSFAPRDSHKAQIQFALER----GIP--AFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYN-A 214 (527)
Q Consensus 143 vgsfga~Ll~r-~V~~msiAp~D~seaqvq~A~eR----g~p--a~~~v~dae~LPFpD~SFDlV~cs~~l~hw~d~~-~ 214 (527)
.|+++-++..+ |+.+..+ ..|++|++.|+++ |+. +.+...|...++. +||.|++-.++.|..... .
T Consensus 73 wG~~~~~~a~~~g~~v~gi---tlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~---~fD~IvSi~~~Ehvg~~~~~ 146 (273)
T PF02353_consen 73 WGGLAIYAAERYGCHVTGI---TLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPG---KFDRIVSIEMFEHVGRKNYP 146 (273)
T ss_dssp TSHHHHHHHHHH--EEEEE---ES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG------S-SEEEEESEGGGTCGGGHH
T ss_pred ccHHHHHHHHHcCcEEEEE---ECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCC---CCCEEEEEechhhcChhHHH
Confidence 46666677777 7766666 4578999988754 554 4566677766666 899999999999996432 3
Q ss_pred HHHHHHhhcccCCcEEEEec
Q 009719 215 TYLIEVDRLLRPGGYLVISG 234 (527)
Q Consensus 215 ~aL~Ei~RVLRPGG~lviS~ 234 (527)
.++.++.|+|||||.+++..
T Consensus 147 ~~f~~~~~~LkpgG~~~lq~ 166 (273)
T PF02353_consen 147 AFFRKISRLLKPGGRLVLQT 166 (273)
T ss_dssp HHHHHHHHHSETTEEEEEEE
T ss_pred HHHHHHHHhcCCCcEEEEEe
Confidence 49999999999999999754
No 58
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=97.65 E-value=4.9e-05 Score=77.37 Aligned_cols=87 Identities=24% Similarity=0.268 Sum_probs=62.4
Q ss_pred hhcccccc----ccCCeeEEeeccCcChHHHHHHHHHcCC--Cc---------EEeeccccCCCCCCCcccEEEecCccc
Q 009719 143 VASFGGSM----LSENILTLSFAPRDSHKAQIQFALERGI--PA---------FVAMLGTRRLPFPAFSFDIVHCSRCLI 207 (527)
Q Consensus 143 vgsfga~L----l~r~V~~msiAp~D~seaqvq~A~eRg~--pa---------~~~v~dae~LPFpD~SFDlV~cs~~l~ 207 (527)
+|+.||-| ...|. +++..|.++.||+.|++..- |. .+...+.+.+- ..||+|+|+.+++
T Consensus 96 vGCGgGLLSepLArlga---~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~---~~fDaVvcsevle 169 (282)
T KOG1270|consen 96 VGCGGGLLSEPLARLGA---QVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT---GKFDAVVCSEVLE 169 (282)
T ss_pred eccCccccchhhHhhCC---eeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc---cccceeeeHHHHH
Confidence 77755544 22354 45556999999999988621 11 11223334432 2299999999999
Q ss_pred ccccChHHHHHHHhhcccCCcEEEEecCC
Q 009719 208 PFTAYNATYLIEVDRLLRPGGYLVISGPP 236 (527)
Q Consensus 208 hw~d~~~~aL~Ei~RVLRPGG~lviS~pp 236 (527)
|..+... ++.-+.+.|||||.+++++-.
T Consensus 170 HV~dp~~-~l~~l~~~lkP~G~lfittin 197 (282)
T KOG1270|consen 170 HVKDPQE-FLNCLSALLKPNGRLFITTIN 197 (282)
T ss_pred HHhCHHH-HHHHHHHHhCCCCceEeeehh
Confidence 9988877 999999999999999999864
No 59
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=97.65 E-value=3.3e-05 Score=77.76 Aligned_cols=95 Identities=21% Similarity=0.202 Sum_probs=61.8
Q ss_pred eeEeecCCCccchhhhccCC--CeeEEEecCCCCC-CchhHhhhcc-------c--cccccccCCCCCCCC-Cccchhhh
Q 009719 375 RNIMDMNAFFGGFAAALTSD--PVWVMNVVPARKS-STLSVIYDRG-------L--IGVYHDWCEPFSTYP-RTYDLIHV 441 (527)
Q Consensus 375 RnvmDm~ag~GgFaAaL~~~--~VwvMnvvp~~~~-ntl~vi~eRG-------L--iG~~hdwce~fstYP-rtyDLiHa 441 (527)
..|||+|||.|.++..|.++ +-. +|+-.|-. +-|..+-+|. . |-..+.=.+.++ || .+||+|.+
T Consensus 75 ~~VLDlGcGtG~~~~~la~~~~~~~--~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp-~~~~sfD~V~~ 151 (261)
T PLN02233 75 DRVLDLCCGSGDLAFLLSEKVGSDG--KVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLP-FDDCYFDAITM 151 (261)
T ss_pred CEEEEECCcCCHHHHHHHHHhCCCC--EEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCC-CCCCCEeEEEE
Confidence 47999999999998887543 111 23333332 4555554442 1 112222234444 45 79999999
Q ss_pred cCccccccCCCCCCCCCcccccceeecccccCCcEEEEeC
Q 009719 442 SGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 481 (527)
Q Consensus 442 ~~~fs~~~~~~~~~~rC~~~~illEmDRILRP~G~~iird 481 (527)
+..+..+. +...+|-||-|+|||||.+++.|
T Consensus 152 ~~~l~~~~---------d~~~~l~ei~rvLkpGG~l~i~d 182 (261)
T PLN02233 152 GYGLRNVV---------DRLKAMQEMYRVLKPGSRVSILD 182 (261)
T ss_pred ecccccCC---------CHHHHHHHHHHHcCcCcEEEEEE
Confidence 87776542 34778999999999999998875
No 60
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.61 E-value=9.7e-06 Score=77.00 Aligned_cols=52 Identities=31% Similarity=0.402 Sum_probs=46.6
Q ss_pred cccCCCCCCCcccEEEecCcccccccChH-HHHHHHhhcccCCcEEEEecCCC
Q 009719 186 GTRRLPFPAFSFDIVHCSRCLIPFTAYNA-TYLIEVDRLLRPGGYLVISGPPV 237 (527)
Q Consensus 186 dae~LPFpD~SFDlV~cs~~l~hw~d~~~-~aL~Ei~RVLRPGG~lviS~pp~ 237 (527)
....++|.|+|.|++.|.+++.|+.-+++ .+++|.+|+|||||+|-++.|..
T Consensus 37 As~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl 89 (185)
T COG4627 37 ASNESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDL 89 (185)
T ss_pred hhhhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCc
Confidence 35678999999999999999999987765 49999999999999999999853
No 61
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.58 E-value=0.00043 Score=76.33 Aligned_cols=125 Identities=9% Similarity=0.078 Sum_probs=71.8
Q ss_pred CeeeEeecCCCccchhhhccCC--CeeEEEecCCCC--CCchhHhhhccccccccccCCCC----CCCC-CccchhhhcC
Q 009719 373 AIRNIMDMNAFFGGFAAALTSD--PVWVMNVVPARK--SSTLSVIYDRGLIGVYHDWCEPF----STYP-RTYDLIHVSG 443 (527)
Q Consensus 373 ~iRnvmDm~ag~GgFaAaL~~~--~VwvMnvvp~~~--~ntl~vi~eRGLiG~~hdwce~f----stYP-rtyDLiHa~~ 443 (527)
.-..++|+|||.|.|.+.+... +.-++-|-.... -..+.-+.++||-.+. =.|..+ .-+| .+.|-||-.
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~-~~~~~~~~~~~~~~~~sv~~i~i~- 424 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFL-LFPNNLDLILNDLPNNSLDGIYIL- 424 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEE-EEcCCHHHHHHhcCcccccEEEEE-
Confidence 4689999999999999988433 232322222221 1445666777762221 122221 2245 778877753
Q ss_pred ccc-cccCCCCCCCCCcccccceeecccccCCcEEEEe-CCHHHHHHHHHH-HhcCCcee
Q 009719 444 IES-LIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR-DSPEVIDKVSRI-ANTVRWTA 500 (527)
Q Consensus 444 ~fs-~~~~~~~~~~rC~~~~illEmDRILRP~G~~iir-d~~~~~~~i~~i-~~~l~W~~ 500 (527)
|. .|--..-.+.|=--...|-++-|+|+|||.+.++ |..++.+.+.+. -..-.++.
T Consensus 425 -FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~~y~~~~~~~~~~~~~f~~ 483 (506)
T PRK01544 425 -FPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIENYFYEAIELIQQNGNFEI 483 (506)
T ss_pred -CCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhCCCeEe
Confidence 53 4521111233333458899999999999999887 555665554444 33333443
No 62
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=97.55 E-value=2.7e-05 Score=78.16 Aligned_cols=89 Identities=18% Similarity=0.187 Sum_probs=71.9
Q ss_pred hhccccccccCCeeEEeeccCcChHHHHHHHHHc---CCCcEEeeccccCCCCCCCcccEEEecCcccccccChHHHHHH
Q 009719 143 VASFGGSMLSENILTLSFAPRDSHKAQIQFALER---GIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIE 219 (527)
Q Consensus 143 vgsfga~Ll~r~V~~msiAp~D~seaqvq~A~eR---g~pa~~~v~dae~LPFpD~SFDlV~cs~~l~hw~d~~~~aL~E 219 (527)
+|....+|+.+||.- +...|.|..|++.++.. ++.....+.|-+.|||.++|||+|++|..+ ||.++....+..
T Consensus 83 ~G~v~rhl~~e~vek--li~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlsl-HW~NdLPg~m~~ 159 (325)
T KOG2940|consen 83 LGAVKRHLRGEGVEK--LIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSL-HWTNDLPGSMIQ 159 (325)
T ss_pred hhhhhHHHHhcchhh--eeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhh-hhhccCchHHHH
Confidence 455566888888763 34458888999988765 334455678999999999999999999986 999887669999
Q ss_pred HhhcccCCcEEEEec
Q 009719 220 VDRLLRPGGYLVISG 234 (527)
Q Consensus 220 i~RVLRPGG~lviS~ 234 (527)
+.-.|||.|.|+.|-
T Consensus 160 ck~~lKPDg~Fiasm 174 (325)
T KOG2940|consen 160 CKLALKPDGLFIASM 174 (325)
T ss_pred HHHhcCCCccchhHH
Confidence 999999999999764
No 63
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=97.54 E-value=0.00064 Score=63.95 Aligned_cols=88 Identities=14% Similarity=0.136 Sum_probs=58.8
Q ss_pred hhccccccccCCeeEEeeccCcChHHHHHHHHHc----CCCcEEeeccccCCCCCCCcccEEEecCcccccccC------
Q 009719 143 VASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAY------ 212 (527)
Q Consensus 143 vgsfga~Ll~r~V~~msiAp~D~seaqvq~A~eR----g~pa~~~v~dae~LPFpD~SFDlV~cs~~l~hw~d~------ 212 (527)
.|.++..+..++. .+...|.++.+++.|+++ +....+..+|....+ .++||+|+++-..+|..+.
T Consensus 30 ~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~--~~~fD~Vi~n~p~~~~~~~~~~~~~ 104 (179)
T TIGR00537 30 TGLVAIRLKGKGK---CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGV--RGKFDVILFNPPYLPLEDDLRRGDW 104 (179)
T ss_pred hhHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHcCCceEEEEccccccc--CCcccEEEECCCCCCCcchhcccch
Confidence 3444445555554 233347788888887764 344455666664443 4699999999776655431
Q ss_pred --------------hHHHHHHHhhcccCCcEEEEecC
Q 009719 213 --------------NATYLIEVDRLLRPGGYLVISGP 235 (527)
Q Consensus 213 --------------~~~aL~Ei~RVLRPGG~lviS~p 235 (527)
...+|.++.|+|||||.+++..+
T Consensus 105 ~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~ 141 (179)
T TIGR00537 105 LDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQS 141 (179)
T ss_pred hhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEe
Confidence 12379999999999999999875
No 64
>PLN02244 tocopherol O-methyltransferase
Probab=97.54 E-value=4.8e-05 Score=79.42 Aligned_cols=94 Identities=17% Similarity=0.258 Sum_probs=60.1
Q ss_pred CeeeEeecCCCccchhhhccCC---CeeEEEecCCCCCCchhH----hhhccccc----cccccCCCCCCCC-Cccchhh
Q 009719 373 AIRNIMDMNAFFGGFAAALTSD---PVWVMNVVPARKSSTLSV----IYDRGLIG----VYHDWCEPFSTYP-RTYDLIH 440 (527)
Q Consensus 373 ~iRnvmDm~ag~GgFaAaL~~~---~VwvMnvvp~~~~ntl~v----i~eRGLiG----~~hdwce~fstYP-rtyDLiH 440 (527)
.-..|||+|||.|+++..|.++ .|..+.+.| +.+.. +-++|+.. ...|..+ ++ +| .+||+|.
T Consensus 118 ~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~----~~i~~a~~~~~~~g~~~~v~~~~~D~~~-~~-~~~~~FD~V~ 191 (340)
T PLN02244 118 RPKRIVDVGCGIGGSSRYLARKYGANVKGITLSP----VQAARANALAAAQGLSDKVSFQVADALN-QP-FEDGQFDLVW 191 (340)
T ss_pred CCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCH----HHHHHHHHHHHhcCCCCceEEEEcCccc-CC-CCCCCccEEE
Confidence 3467999999999999888654 343333322 32322 23345421 1123222 22 33 7999999
Q ss_pred hcCccccccCCCCCCCCCcccccceeecccccCCcEEEEeC
Q 009719 441 VSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 481 (527)
Q Consensus 441 a~~~fs~~~~~~~~~~rC~~~~illEmDRILRP~G~~iird 481 (527)
+...+.++. +...+|-||-|+|||||.++|.+
T Consensus 192 s~~~~~h~~---------d~~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 192 SMESGEHMP---------DKRKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred ECCchhccC---------CHHHHHHHHHHHcCCCcEEEEEE
Confidence 977666553 13578999999999999999853
No 65
>PRK08317 hypothetical protein; Provisional
Probab=97.51 E-value=5e-05 Score=72.40 Aligned_cols=97 Identities=23% Similarity=0.315 Sum_probs=60.7
Q ss_pred CCeeeEeecCCCccchhhhccCC---CeeEEEecCCCCCCchhHhhhc--cccccc----cccCCCCCCCC-Cccchhhh
Q 009719 372 PAIRNIMDMNAFFGGFAAALTSD---PVWVMNVVPARKSSTLSVIYDR--GLIGVY----HDWCEPFSTYP-RTYDLIHV 441 (527)
Q Consensus 372 ~~iRnvmDm~ag~GgFaAaL~~~---~VwvMnvvp~~~~ntl~vi~eR--GLiG~~----hdwce~fstYP-rtyDLiHa 441 (527)
..-.+|||+|||.|.++..+.+. ..-|.-+-+ .++.+..+-++ +..... .|.. .++ ++ .+||+||+
T Consensus 18 ~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~--~~~~~~~a~~~~~~~~~~~~~~~~d~~-~~~-~~~~~~D~v~~ 93 (241)
T PRK08317 18 QPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDR--SEAMLALAKERAAGLGPNVEFVRGDAD-GLP-FPDGSFDAVRS 93 (241)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeC--CHHHHHHHHHHhhCCCCceEEEecccc-cCC-CCCCCceEEEE
Confidence 33458999999999998887543 122222221 12445555554 111111 1211 112 33 78999999
Q ss_pred cCccccccCCCCCCCCCcccccceeecccccCCcEEEEeC
Q 009719 442 SGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 481 (527)
Q Consensus 442 ~~~fs~~~~~~~~~~rC~~~~illEmDRILRP~G~~iird 481 (527)
..+|.... +...++-++-|+|+|||++++.+
T Consensus 94 ~~~~~~~~---------~~~~~l~~~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 94 DRVLQHLE---------DPARALAEIARVLRPGGRVVVLD 124 (241)
T ss_pred echhhccC---------CHHHHHHHHHHHhcCCcEEEEEe
Confidence 98887653 24678999999999999998864
No 66
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=97.51 E-value=5.4e-05 Score=76.98 Aligned_cols=114 Identities=15% Similarity=0.148 Sum_probs=70.3
Q ss_pred eEeecCCCccchhhhccCCCeeEEEecCCCCC-Cchh----Hhhhcccc--ccccccCCCCCCCCCccchhhhcCccccc
Q 009719 376 NIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLS----VIYDRGLI--GVYHDWCEPFSTYPRTYDLIHVSGIESLI 448 (527)
Q Consensus 376 nvmDm~ag~GgFaAaL~~~~VwvMnvvp~~~~-ntl~----vi~eRGLi--G~~hdwce~fstYPrtyDLiHa~~~fs~~ 448 (527)
+|||+|||.|.++.+|.+...=| .-.|.. .-+. .+-+.|+- -...|--+ +. .+..||+|-+..+|...
T Consensus 123 ~vLDlGcG~G~~~~~la~~g~~V---~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~-~~-~~~~fD~I~~~~vl~~l 197 (287)
T PRK12335 123 KALDLGCGQGRNSLYLALLGFDV---TAVDINQQSLENLQEIAEKENLNIRTGLYDINS-AS-IQEEYDFILSTVVLMFL 197 (287)
T ss_pred CEEEeCCCCCHHHHHHHHCCCEE---EEEECCHHHHHHHHHHHHHcCCceEEEEechhc-cc-ccCCccEEEEcchhhhC
Confidence 79999999999999987765333 333332 2222 23345651 11112211 11 26889999998777543
Q ss_pred cCCCCCCCCCcccccceeecccccCCcEEEEe---CCH--------H---HHHHHHHHHhcCCceeEEe
Q 009719 449 KNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR---DSP--------E---VIDKVSRIANTVRWTAAVH 503 (527)
Q Consensus 449 ~~~~~~~~rC~~~~illEmDRILRP~G~~iir---d~~--------~---~~~~i~~i~~~l~W~~~~~ 503 (527)
+.-.+..++-+|-|+|+|||++++- +.. . .-.+++++.+. |++...
T Consensus 198 -------~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~~p~~~~~~~~el~~~~~~--~~i~~~ 257 (287)
T PRK12335 198 -------NRERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCPMPFSFTFKEGELKDYYQD--WEIVKY 257 (287)
T ss_pred -------CHHHHHHHHHHHHHhcCCCcEEEEEEecccccCCCCCCCCcccCHHHHHHHhCC--CEEEEE
Confidence 2234678999999999999996542 110 1 23456666666 887765
No 67
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=97.49 E-value=0.00018 Score=70.64 Aligned_cols=129 Identities=16% Similarity=0.157 Sum_probs=74.9
Q ss_pred hhccccccccCCeeEEeeccCcChHHHHHHHHHcC--CC-cEEeeccccCCCCCCCcccEEEecCcccccccC--hHHHH
Q 009719 143 VASFGGSMLSENILTLSFAPRDSHKAQIQFALERG--IP-AFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAY--NATYL 217 (527)
Q Consensus 143 vgsfga~Ll~r~V~~msiAp~D~seaqvq~A~eRg--~p-a~~~v~dae~LPFpD~SFDlV~cs~~l~hw~d~--~~~aL 217 (527)
.|.|...|..+-- .+...|.++..++.|++|- .+ +.+.+++... ..|++.||+|++|.++.++.+. ...++
T Consensus 54 ~G~lT~~LA~rCd---~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~-~~P~~~FDLIV~SEVlYYL~~~~~L~~~l 129 (201)
T PF05401_consen 54 IGVLTERLAPRCD---RLLAVDISPRALARARERLAGLPHVEWIQADVPE-FWPEGRFDLIVLSEVLYYLDDAEDLRAAL 129 (201)
T ss_dssp TSHHHHHHGGGEE---EEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT----SS-EEEEEEES-GGGSSSHHHHHHHH
T ss_pred ccHHHHHHHHhhC---ceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCC-CCCCCCeeEEEEehHhHcCCCHHHHHHHH
Confidence 4566666666532 3444478889999999883 33 4456666533 3689999999999998777643 23589
Q ss_pred HHHhhcccCCcEEEEecCC----CCCCCchhHHHHHHHHHHhcceEEeeeecceEEEeCCCcccccc
Q 009719 218 IEVDRLLRPGGYLVISGPP----VQWPKQDKEWADLQAVARALCYELIAVDGNTVIWKKPVGESCLS 280 (527)
Q Consensus 218 ~Ei~RVLRPGG~lviS~pp----~~~~~~~~~w~~i~~l~~~mcW~~~~~~~~v~iwrKp~~~~c~~ 280 (527)
..+...|+|||.||+.+.. ..| ++..+=+.|.++...+ ..+-+.+.+=....|+.|-.
T Consensus 130 ~~l~~~L~pgG~LV~g~~rd~~c~~w-gh~~ga~tv~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 191 (201)
T PF05401_consen 130 DRLVAALAPGGHLVFGHARDANCRRW-GHAAGAETVLEMLQEH----LTEVERVECRGGSPNEDCLL 191 (201)
T ss_dssp HHHHHTEEEEEEEEEEEE-HHHHHHT-T-S--HHHHHHHHHHH----SEEEEEEEEE-SSTTSEEEE
T ss_pred HHHHHHhCCCCEEEEEEecCCccccc-CcccchHHHHHHHHHH----hhheeEEEEcCCCCCCceEe
Confidence 9999999999999996641 122 1223334455555432 22333455555555566654
No 68
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=97.49 E-value=7.5e-05 Score=74.22 Aligned_cols=99 Identities=15% Similarity=0.210 Sum_probs=64.6
Q ss_pred ccCCCCeeeEeecCCCccchhhhccCC--CeeEEEecCCCC-CCchhHhhhccccccccccCCCCCCCCCccchhhhcCc
Q 009719 368 KLGTPAIRNIMDMNAFFGGFAAALTSD--PVWVMNVVPARK-SSTLSVIYDRGLIGVYHDWCEPFSTYPRTYDLIHVSGI 444 (527)
Q Consensus 368 ~i~~~~iRnvmDm~ag~GgFaAaL~~~--~VwvMnvvp~~~-~ntl~vi~eRGLiG~~hdwce~fstYPrtyDLiHa~~~ 444 (527)
.+....-..|||+|||.|.++.+|..+ .. .|+=.|- ++.+..+-++++-=+..|- +.+. ...+||+|++..+
T Consensus 24 ~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~---~v~gvD~s~~~~~~a~~~~~~~~~~d~-~~~~-~~~~fD~v~~~~~ 98 (255)
T PRK14103 24 RVGAERARRVVDLGCGPGNLTRYLARRWPGA---VIEALDSSPEMVAAARERGVDARTGDV-RDWK-PKPDTDVVVSNAA 98 (255)
T ss_pred hCCCCCCCEEEEEcCCCCHHHHHHHHHCCCC---EEEEEECCHHHHHHHHhcCCcEEEcCh-hhCC-CCCCceEEEEehh
Confidence 344333478999999999999888655 22 2222332 3566666667641111221 2221 2368999999888
Q ss_pred cccccCCCCCCCCCcccccceeecccccCCcEEEEe
Q 009719 445 ESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 480 (527)
Q Consensus 445 fs~~~~~~~~~~rC~~~~illEmDRILRP~G~~iir 480 (527)
|-... +...+|-|+-|+|+|||++++.
T Consensus 99 l~~~~---------d~~~~l~~~~~~LkpgG~l~~~ 125 (255)
T PRK14103 99 LQWVP---------EHADLLVRWVDELAPGSWIAVQ 125 (255)
T ss_pred hhhCC---------CHHHHHHHHHHhCCCCcEEEEE
Confidence 76432 2367889999999999999986
No 69
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=97.45 E-value=3.3e-05 Score=74.55 Aligned_cols=94 Identities=22% Similarity=0.371 Sum_probs=60.1
Q ss_pred eeEeecCCCccchhhhccCC--CeeEEEecCCCCCCchhHhhh----cccc---ccc-cccCCCCCCCCCccchhhhcCc
Q 009719 375 RNIMDMNAFFGGFAAALTSD--PVWVMNVVPARKSSTLSVIYD----RGLI---GVY-HDWCEPFSTYPRTYDLIHVSGI 444 (527)
Q Consensus 375 RnvmDm~ag~GgFaAaL~~~--~VwvMnvvp~~~~ntl~vi~e----RGLi---G~~-hdwce~fstYPrtyDLiHa~~~ 444 (527)
+.|||+|||.|+++..+.+. +.-|.-+-. +++++..+-+ .|+- -+. .|..+. .+|.+||+|++..+
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~--s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~--~~~~~fD~I~~~~~ 76 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTI--SPEQAEVGRERIRALGLQGRIRIFYRDSAKD--PFPDTYDLVFGFEV 76 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEEC--CHHHHHHHHHHHHhcCCCcceEEEecccccC--CCCCCCCEeehHHH
Confidence 36999999999998887543 232222211 2244443333 3542 222 222111 24678999999888
Q ss_pred cccccCCCCCCCCCcccccceeecccccCCcEEEEeC
Q 009719 445 ESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 481 (527)
Q Consensus 445 fs~~~~~~~~~~rC~~~~illEmDRILRP~G~~iird 481 (527)
|.... +...++-++.|+|+|||++++.+
T Consensus 77 l~~~~---------~~~~~l~~~~~~LkpgG~l~i~~ 104 (224)
T smart00828 77 IHHIK---------DKMDLFSNISRHLKDGGHLVLAD 104 (224)
T ss_pred HHhCC---------CHHHHHHHHHHHcCCCCEEEEEE
Confidence 77543 24678999999999999999975
No 70
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=97.41 E-value=7.1e-05 Score=77.89 Aligned_cols=95 Identities=16% Similarity=0.226 Sum_probs=58.3
Q ss_pred eeEeecCCCccchhhhccCCC-eeEEEecCCCCC-CchhHhhhc--cc---cccccccCCCCCCCCCccchhhhcCcccc
Q 009719 375 RNIMDMNAFFGGFAAALTSDP-VWVMNVVPARKS-STLSVIYDR--GL---IGVYHDWCEPFSTYPRTYDLIHVSGIESL 447 (527)
Q Consensus 375 RnvmDm~ag~GgFaAaL~~~~-VwvMnvvp~~~~-ntl~vi~eR--GL---iG~~hdwce~fstYPrtyDLiHa~~~fs~ 447 (527)
+.|+|+|||.|.|+..|.... -.|.-|=|...- .+...+ .+ +. |-+.+.=-|.++. +.+||+|+|.+++-+
T Consensus 124 ~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~-~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~vl~H 201 (322)
T PRK15068 124 RTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAV-RKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSMGVLYH 201 (322)
T ss_pred CEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHH-HHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEECChhhc
Confidence 689999999999998886543 234443332211 111111 11 10 1111100123333 789999999888764
Q ss_pred ccCCCCCCCCCcccccceeecccccCCcEEEEe
Q 009719 448 IKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 480 (527)
Q Consensus 448 ~~~~~~~~~rC~~~~illEmDRILRP~G~~iir 480 (527)
. -+...+|-++-|.|+|||.+|+.
T Consensus 202 ~---------~dp~~~L~~l~~~LkpGG~lvl~ 225 (322)
T PRK15068 202 R---------RSPLDHLKQLKDQLVPGGELVLE 225 (322)
T ss_pred c---------CCHHHHHHHHHHhcCCCcEEEEE
Confidence 3 24578999999999999999986
No 71
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=97.40 E-value=3.5e-05 Score=78.59 Aligned_cols=101 Identities=17% Similarity=0.286 Sum_probs=61.8
Q ss_pred cCCCCeeeEeecCCCccchhhhccCC-CeeEEEecCCCCCCchhH----hhhccccccccccCCCCCCCCCccchhhhcC
Q 009719 369 LGTPAIRNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKSSTLSV----IYDRGLIGVYHDWCEPFSTYPRTYDLIHVSG 443 (527)
Q Consensus 369 i~~~~iRnvmDm~ag~GgFaAaL~~~-~VwvMnvvp~~~~ntl~v----i~eRGLiG~~hdwce~fstYPrtyDLiHa~~ 443 (527)
|+.|. .|||+|||.||++-.+.++ .+-|.-|-- +++|... |-++||-+...=-+.-|...+-+||-|=+-+
T Consensus 60 l~~G~--~vLDiGcGwG~~~~~~a~~~g~~v~gitl--S~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~~fD~IvSi~ 135 (273)
T PF02353_consen 60 LKPGD--RVLDIGCGWGGLAIYAAERYGCHVTGITL--SEEQAEYARERIREAGLEDRVEVRLQDYRDLPGKFDRIVSIE 135 (273)
T ss_dssp --TT---EEEEES-TTSHHHHHHHHHH--EEEEEES---HHHHHHHHHHHHCSTSSSTEEEEES-GGG---S-SEEEEES
T ss_pred CCCCC--EEEEeCCCccHHHHHHHHHcCcEEEEEEC--CHHHHHHHHHHHHhcCCCCceEEEEeeccccCCCCCEEEEEe
Confidence 66664 8999999999999999777 665543332 3355544 4578874332212222333344899887777
Q ss_pred ccccccCCCCCCCCCcccccceeecccccCCcEEEEe
Q 009719 444 IESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 480 (527)
Q Consensus 444 ~fs~~~~~~~~~~rC~~~~illEmDRILRP~G~~iir 480 (527)
.|-+.. +=+...++-+++|+|+|||.+++.
T Consensus 136 ~~Ehvg-------~~~~~~~f~~~~~~LkpgG~~~lq 165 (273)
T PF02353_consen 136 MFEHVG-------RKNYPAFFRKISRLLKPGGRLVLQ 165 (273)
T ss_dssp EGGGTC-------GGGHHHHHHHHHHHSETTEEEEEE
T ss_pred chhhcC-------hhHHHHHHHHHHHhcCCCcEEEEE
Confidence 777652 234567899999999999999987
No 72
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=97.39 E-value=0.00019 Score=68.91 Aligned_cols=71 Identities=21% Similarity=0.274 Sum_probs=51.8
Q ss_pred cChHHHHHHHHHc----CCC-cEEeeccccCCC---CCCCcccEEEecCcccccccCh--------HHHHHHHhhcccCC
Q 009719 164 DSHKAQIQFALER----GIP-AFVAMLGTRRLP---FPAFSFDIVHCSRCLIPFTAYN--------ATYLIEVDRLLRPG 227 (527)
Q Consensus 164 D~seaqvq~A~eR----g~p-a~~~v~dae~LP---FpD~SFDlV~cs~~l~hw~d~~--------~~aL~Ei~RVLRPG 227 (527)
|.++.+++.|+++ ++. +.+..+|+..++ +++++||.|++... .+|+... ..++.++.|+||||
T Consensus 47 D~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~p-dpw~k~~h~~~r~~~~~~l~~~~r~Lkpg 125 (194)
T TIGR00091 47 EIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNFP-DPWPKKRHNKRRITQPHFLKEYANVLKKG 125 (194)
T ss_pred EeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEECC-CcCCCCCccccccCCHHHHHHHHHHhCCC
Confidence 5566777776543 443 556778887665 67789999998765 4665432 23899999999999
Q ss_pred cEEEEecC
Q 009719 228 GYLVISGP 235 (527)
Q Consensus 228 G~lviS~p 235 (527)
|.|++++.
T Consensus 126 G~l~~~td 133 (194)
T TIGR00091 126 GVIHFKTD 133 (194)
T ss_pred CEEEEEeC
Confidence 99999875
No 73
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=97.39 E-value=0.00028 Score=60.78 Aligned_cols=87 Identities=15% Similarity=0.052 Sum_probs=56.2
Q ss_pred hhccccccccCCeeEEeeccCcChHHHHHHHHHc----CCC-cEEeeccccC-CCCCCCcccEEEecCcccccccChHHH
Q 009719 143 VASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIP-AFVAMLGTRR-LPFPAFSFDIVHCSRCLIPFTAYNATY 216 (527)
Q Consensus 143 vgsfga~Ll~r~V~~msiAp~D~seaqvq~A~eR----g~p-a~~~v~dae~-LPFpD~SFDlV~cs~~l~hw~d~~~~a 216 (527)
.|.++.++..+.-. ..+...|.++.+++.|+++ +.+ ..+...+... +++..++||.|++..+..+. ..+
T Consensus 30 ~G~~~~~l~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~----~~~ 104 (124)
T TIGR02469 30 SGSITIEAARLVPN-GRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGGSGGLL----QEI 104 (124)
T ss_pred CCHHHHHHHHHCCC-ceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECCcchhH----HHH
Confidence 34444455544211 2334447778888877643 333 4555566544 55555799999997665332 249
Q ss_pred HHHHhhcccCCcEEEEec
Q 009719 217 LIEVDRLLRPGGYLVISG 234 (527)
Q Consensus 217 L~Ei~RVLRPGG~lviS~ 234 (527)
+.++.|+|||||+|+++.
T Consensus 105 l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 105 LEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred HHHHHHHcCCCCEEEEEe
Confidence 999999999999999875
No 74
>PLN03075 nicotianamine synthase; Provisional
Probab=97.38 E-value=0.00029 Score=73.02 Aligned_cols=76 Identities=14% Similarity=0.230 Sum_probs=57.4
Q ss_pred eeccCcChHHHHHHHHHc-----CC--CcEEeeccccCCCCCCCcccEEEecCcccccc-cChHHHHHHHhhcccCCcEE
Q 009719 159 SFAPRDSHKAQIQFALER-----GI--PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFT-AYNATYLIEVDRLLRPGGYL 230 (527)
Q Consensus 159 siAp~D~seaqvq~A~eR-----g~--pa~~~v~dae~LPFpD~SFDlV~cs~~l~hw~-d~~~~aL~Ei~RVLRPGG~l 230 (527)
.|...|.++++++.|++. ++ .+.|.++|+..++-..+.||+|.|. ++++|. .+...+|..+.|+|||||+|
T Consensus 151 ~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~-ALi~~dk~~k~~vL~~l~~~LkPGG~L 229 (296)
T PLN03075 151 SFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA-ALVGMDKEEKVKVIEHLGKHMAPGALL 229 (296)
T ss_pred EEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe-cccccccccHHHHHHHHHHhcCCCcEE
Confidence 344458888888888753 22 2567778876664345789999999 999994 33345999999999999999
Q ss_pred EEecC
Q 009719 231 VISGP 235 (527)
Q Consensus 231 viS~p 235 (527)
++...
T Consensus 230 vlr~~ 234 (296)
T PLN03075 230 MLRSA 234 (296)
T ss_pred EEecc
Confidence 99763
No 75
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=97.37 E-value=0.00013 Score=74.55 Aligned_cols=114 Identities=12% Similarity=0.096 Sum_probs=66.8
Q ss_pred eeEeecCCCccchhhhccCCCeeEEEecCCCCC-CchhHhhhc----cccccccccCCCCCCC-CCccchhhhcCccccc
Q 009719 375 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GLIGVYHDWCEPFSTY-PRTYDLIHVSGIESLI 448 (527)
Q Consensus 375 RnvmDm~ag~GgFaAaL~~~~VwvMnvvp~~~~-ntl~vi~eR----GLiG~~hdwce~fstY-PrtyDLiHa~~~fs~~ 448 (527)
.+|||+|||.|.++.++...+.- .|+-+|-. ..+..+.++ |+-......+...... +..||+|.|+.+...
T Consensus 161 ~~VLDvGcGsG~lai~aa~~g~~--~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~~~- 237 (288)
T TIGR00406 161 KNVIDVGCGSGILSIAALKLGAA--KVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILAEV- 237 (288)
T ss_pred CEEEEeCCChhHHHHHHHHcCCC--eEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCHHH-
Confidence 68999999999987766544321 22222322 233333322 2211112222212222 468999998644332
Q ss_pred cCCCCCCCCCcccccceeecccccCCcEEEEeCC-HHHHHHHHHHHhcCCceeEEe
Q 009719 449 KNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS-PEVIDKVSRIANTVRWTAAVH 503 (527)
Q Consensus 449 ~~~~~~~~rC~~~~illEmDRILRP~G~~iird~-~~~~~~i~~i~~~l~W~~~~~ 503 (527)
+..++-++-|+|+|||++++++- .+-.+++.+.+++. |+....
T Consensus 238 -----------l~~ll~~~~~~LkpgG~li~sgi~~~~~~~v~~~~~~~-f~~~~~ 281 (288)
T TIGR00406 238 -----------IKELYPQFSRLVKPGGWLILSGILETQAQSVCDAYEQG-FTVVEI 281 (288)
T ss_pred -----------HHHHHHHHHHHcCCCcEEEEEeCcHhHHHHHHHHHHcc-CceeeE
Confidence 24578899999999999999974 33455666666665 766543
No 76
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=97.37 E-value=0.00051 Score=71.31 Aligned_cols=77 Identities=21% Similarity=0.181 Sum_probs=54.8
Q ss_pred eccCcChHHHHHHHHHc----CCC-cEEeeccccCCCCCCCcccEEEecC--c---c--cccc-cChHHHHHHHhhcccC
Q 009719 160 FAPRDSHKAQIQFALER----GIP-AFVAMLGTRRLPFPAFSFDIVHCSR--C---L--IPFT-AYNATYLIEVDRLLRP 226 (527)
Q Consensus 160 iAp~D~seaqvq~A~eR----g~p-a~~~v~dae~LPFpD~SFDlV~cs~--~---l--~hw~-d~~~~aL~Ei~RVLRP 226 (527)
+...|.++.|++.|+++ |+. ..+..+|+.++|+++++||+|++.- . . .+.. +....+|.|+.|+|||
T Consensus 207 v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~ 286 (329)
T TIGR01177 207 VIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKS 286 (329)
T ss_pred EEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccC
Confidence 33447778888777643 444 3567789999999999999999851 1 1 1111 1123499999999999
Q ss_pred CcEEEEecCC
Q 009719 227 GGYLVISGPP 236 (527)
Q Consensus 227 GG~lviS~pp 236 (527)
||++++..|.
T Consensus 287 gG~lv~~~~~ 296 (329)
T TIGR01177 287 EGWIVYAVPT 296 (329)
T ss_pred CcEEEEEEcC
Confidence 9999998873
No 77
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=97.36 E-value=4.9e-05 Score=73.10 Aligned_cols=93 Identities=14% Similarity=0.187 Sum_probs=58.5
Q ss_pred eeEeecCCCccchhhhccCCCeeEEEecCCCCC-CchhHh----hhcccc--ccccccCCCCCCCCCccchhhhcCcccc
Q 009719 375 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVI----YDRGLI--GVYHDWCEPFSTYPRTYDLIHVSGIESL 447 (527)
Q Consensus 375 RnvmDm~ag~GgFaAaL~~~~VwvMnvvp~~~~-ntl~vi----~eRGLi--G~~hdwce~fstYPrtyDLiHa~~~fs~ 447 (527)
.+|||+|||.|.++..|.++.- .|.-.|.. +.+..+ -+.|+- ....|.. .++ ++.+||+|-+..+|..
T Consensus 32 ~~vLDiGcG~G~~a~~la~~g~---~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~-~~~-~~~~fD~I~~~~~~~~ 106 (195)
T TIGR00477 32 CKTLDLGCGQGRNSLYLSLAGY---DVRAWDHNPASIASVLDMKARENLPLRTDAYDIN-AAA-LNEDYDFIFSTVVFMF 106 (195)
T ss_pred CcEEEeCCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHHHhCCCceeEeccch-hcc-ccCCCCEEEEeccccc
Confidence 4899999999999988876542 33334433 333332 233441 1112221 122 3568999998877764
Q ss_pred ccCCCCCCCCCcccccceeecccccCCcEEEE
Q 009719 448 IKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVV 479 (527)
Q Consensus 448 ~~~~~~~~~rC~~~~illEmDRILRP~G~~ii 479 (527)
.. .-.+..++-++.|.|+|||++++
T Consensus 107 ~~-------~~~~~~~l~~~~~~LkpgG~lli 131 (195)
T TIGR00477 107 LQ-------AGRVPEIIANMQAHTRPGGYNLI 131 (195)
T ss_pred CC-------HHHHHHHHHHHHHHhCCCcEEEE
Confidence 32 22456889999999999998544
No 78
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=97.36 E-value=0.00022 Score=69.08 Aligned_cols=86 Identities=19% Similarity=0.180 Sum_probs=62.9
Q ss_pred hhccccccccCCeeEEeeccCcChHHHHHHHHHcC----C--CcEEeeccccCCCCCCCcccEEEecCcccccccC-hHH
Q 009719 143 VASFGGSMLSENILTLSFAPRDSHKAQIQFALERG----I--PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAY-NAT 215 (527)
Q Consensus 143 vgsfga~Ll~r~V~~msiAp~D~seaqvq~A~eRg----~--pa~~~v~dae~LPFpD~SFDlV~cs~~l~hw~d~-~~~ 215 (527)
.|.++.+|.+++..+ ...|.++.+++.|+++. . .+.+.+++.+.++ ++||+|+++.+++|++.. ...
T Consensus 66 ~G~~~~~la~~~~~v---~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~fD~ii~~~~l~~~~~~~~~~ 139 (219)
T TIGR02021 66 TGLLSIELAKRGAIV---KAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC---GEFDIVVCMDVLIHYPASDMAK 139 (219)
T ss_pred CCHHHHHHHHCCCEE---EEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC---CCcCEEEEhhHHHhCCHHHHHH
Confidence 455555666665533 34488889999888752 2 3556777887776 899999999999888643 345
Q ss_pred HHHHHhhcccCCcEEEEec
Q 009719 216 YLIEVDRLLRPGGYLVISG 234 (527)
Q Consensus 216 aL~Ei~RVLRPGG~lviS~ 234 (527)
++.++.|++++|+++.++.
T Consensus 140 ~l~~i~~~~~~~~~i~~~~ 158 (219)
T TIGR02021 140 ALGHLASLTKERVIFTFAP 158 (219)
T ss_pred HHHHHHHHhCCCEEEEECC
Confidence 8999999999887777653
No 79
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=97.35 E-value=0.00096 Score=63.95 Aligned_cols=66 Identities=21% Similarity=0.316 Sum_probs=47.3
Q ss_pred cChHHHHHHHHH----cCCC-cEEeeccccCCCCCCCcccEEEecCcccccccChHHHHHHHhhcccCCcEEEEecC
Q 009719 164 DSHKAQIQFALE----RGIP-AFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 235 (527)
Q Consensus 164 D~seaqvq~A~e----Rg~p-a~~~v~dae~LPFpD~SFDlV~cs~~l~hw~d~~~~aL~Ei~RVLRPGG~lviS~p 235 (527)
|.++.|++.|++ .++. ..+..++++.++. +++||+|+|.. +.+ ... .+.++.|+|||||++++...
T Consensus 73 D~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~-~~~fD~I~s~~-~~~---~~~-~~~~~~~~LkpgG~lvi~~~ 143 (181)
T TIGR00138 73 ESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQH-EEQFDVITSRA-LAS---LNV-LLELTLNLLKVGGYFLAYKG 143 (181)
T ss_pred eCcHHHHHHHHHHHHHhCCCCeEEEecchhhccc-cCCccEEEehh-hhC---HHH-HHHHHHHhcCCCCEEEEEcC
Confidence 666777666543 3553 5667788888753 68999998864 332 233 88899999999999998754
No 80
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=97.34 E-value=0.00016 Score=71.64 Aligned_cols=77 Identities=21% Similarity=0.349 Sum_probs=47.2
Q ss_pred EeeccccCCCCCCCcccEEEecCcccccccChHHHHHHHhhcccCCcEEEEecCCCCCCCchhHHHHHHHHHHhcceEEe
Q 009719 182 VAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELI 261 (527)
Q Consensus 182 ~~v~dae~LPFpD~SFDlV~cs~~l~hw~d~~~~aL~Ei~RVLRPGG~lviS~pp~~~~~~~~~w~~i~~l~~~mcW~~~ 261 (527)
+.++|...+|.+|++.|+|++.+.|+- .+-..+|.|.+|||||||.|.|..--..+. + -+...+..+.+-+++.
T Consensus 108 Vtacdia~vPL~~~svDv~VfcLSLMG--Tn~~~fi~EA~RvLK~~G~L~IAEV~SRf~-~---~~~F~~~~~~~GF~~~ 181 (219)
T PF05148_consen 108 VTACDIANVPLEDESVDVAVFCLSLMG--TNWPDFIREANRVLKPGGILKIAEVKSRFE-N---VKQFIKALKKLGFKLK 181 (219)
T ss_dssp EEES-TTS-S--TT-EEEEEEES---S--S-HHHHHHHHHHHEEEEEEEEEEEEGGG-S-----HHHHHHHHHCTTEEEE
T ss_pred EEEecCccCcCCCCceeEEEEEhhhhC--CCcHHHHHHHHheeccCcEEEEEEecccCc-C---HHHHHHHHHHCCCeEE
Confidence 556788999999999999998877754 222239999999999999999987522222 1 1222334466677777
Q ss_pred eee
Q 009719 262 AVD 264 (527)
Q Consensus 262 ~~~ 264 (527)
.++
T Consensus 182 ~~d 184 (219)
T PF05148_consen 182 SKD 184 (219)
T ss_dssp EEE
T ss_pred ecc
Confidence 653
No 81
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=97.34 E-value=9.1e-05 Score=71.86 Aligned_cols=95 Identities=20% Similarity=0.301 Sum_probs=56.6
Q ss_pred eeEeecCCCccchhhhccCC---CeeEEEecCCCCCCchhHhh----hccc--cccccccCCCCCCCC-CccchhhhcCc
Q 009719 375 RNIMDMNAFFGGFAAALTSD---PVWVMNVVPARKSSTLSVIY----DRGL--IGVYHDWCEPFSTYP-RTYDLIHVSGI 444 (527)
Q Consensus 375 RnvmDm~ag~GgFaAaL~~~---~VwvMnvvp~~~~ntl~vi~----eRGL--iG~~hdwce~fstYP-rtyDLiHa~~~ 444 (527)
.+|||+|||.|.++..|.+. ..-|..+-.. ++.+..+- +.++ +-+++.=.+.++ +| .+||+|++...
T Consensus 47 ~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s--~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~V~~~~~ 123 (231)
T TIGR02752 47 TSALDVCCGTADWSIALAEAVGPEGHVIGLDFS--ENMLSVGRQKVKDAGLHNVELVHGNAMELP-FDDNSFDYVTIGFG 123 (231)
T ss_pred CEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECC--HHHHHHHHHHHHhcCCCceEEEEechhcCC-CCCCCccEEEEecc
Confidence 47999999999999888543 1223333221 13232222 2232 111211112222 34 79999998766
Q ss_pred cccccCCCCCCCCCcccccceeecccccCCcEEEEeC
Q 009719 445 ESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 481 (527)
Q Consensus 445 fs~~~~~~~~~~rC~~~~illEmDRILRP~G~~iird 481 (527)
+.... +...+|-|+-|+|+|||.+++.+
T Consensus 124 l~~~~---------~~~~~l~~~~~~Lk~gG~l~~~~ 151 (231)
T TIGR02752 124 LRNVP---------DYMQVLREMYRVVKPGGKVVCLE 151 (231)
T ss_pred cccCC---------CHHHHHHHHHHHcCcCeEEEEEE
Confidence 65332 23567889999999999999875
No 82
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=97.32 E-value=0.00031 Score=67.08 Aligned_cols=67 Identities=27% Similarity=0.276 Sum_probs=51.0
Q ss_pred CcChHHHHHHHHHcCCCcEEeeccccC-C-CCCCCcccEEEecCcccccccChHHHHHHHhhcccCCcEEEEecC
Q 009719 163 RDSHKAQIQFALERGIPAFVAMLGTRR-L-PFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 235 (527)
Q Consensus 163 ~D~seaqvq~A~eRg~pa~~~v~dae~-L-PFpD~SFDlV~cs~~l~hw~d~~~~aL~Ei~RVLRPGG~lviS~p 235 (527)
.|.++++++.|.++++. +.+++++. + ++++++||+|+|+.+++|..+... +|+|+.|++++ .+++.|
T Consensus 42 iD~s~~~i~~a~~~~~~--~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~d~~~-~l~e~~r~~~~---~ii~~p 110 (194)
T TIGR02081 42 IEIDQDGVLACVARGVN--VIQGDLDEGLEAFPDKSFDYVILSQTLQATRNPEE-ILDEMLRVGRH---AIVSFP 110 (194)
T ss_pred EeCCHHHHHHHHHcCCe--EEEEEhhhcccccCCCCcCEEEEhhHhHcCcCHHH-HHHHHHHhCCe---EEEEcC
Confidence 37788999999877653 44456544 6 588999999999999988876555 99999988664 566655
No 83
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=97.32 E-value=0.00034 Score=65.79 Aligned_cols=123 Identities=11% Similarity=0.082 Sum_probs=72.6
Q ss_pred eeEeecCCCccchhhhccCCCeeEEEecCCCCC-CchhHhhh----ccccc--cccccCCCCCCCCCccchhhhcCcccc
Q 009719 375 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYD----RGLIG--VYHDWCEPFSTYPRTYDLIHVSGIESL 447 (527)
Q Consensus 375 RnvmDm~ag~GgFaAaL~~~~VwvMnvvp~~~~-ntl~vi~e----RGLiG--~~hdwce~fstYPrtyDLiHa~~~fs~ 447 (527)
.+|||+|||.|.++.++....- .|+-.|-. ..+..+-+ .|+-. +.-|+.+. .+.+||+|-++-.|..
T Consensus 21 ~~vLdlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~---~~~~fD~Vi~n~p~~~ 94 (179)
T TIGR00537 21 DDVLEIGAGTGLVAIRLKGKGK---CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKG---VRGKFDVILFNPPYLP 94 (179)
T ss_pred CeEEEeCCChhHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccc---cCCcccEEEECCCCCC
Confidence 4699999999999988876543 22323322 32222211 22211 12243332 2469999988766543
Q ss_pred ccCCCC------------CCCCCcccccceeecccccCCcEEEEeCCHHH-HHHHHHHHhcCCceeEEe
Q 009719 448 IKNPGS------------NKNSCSLVDLMVEMDRMLRPEGTVVVRDSPEV-IDKVSRIANTVRWTAAVH 503 (527)
Q Consensus 448 ~~~~~~------------~~~rC~~~~illEmDRILRP~G~~iird~~~~-~~~i~~i~~~l~W~~~~~ 503 (527)
..+... ...+..+..+|-|+.|+|+|||.+++-+.... ..++.++++..-++....
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~~gf~~~~~ 163 (179)
T TIGR00537 95 LEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDERGFRYEIV 163 (179)
T ss_pred CcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHHhCCCeEEEE
Confidence 321000 01123356789999999999999988764433 556666666677777665
No 84
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=97.31 E-value=9.1e-05 Score=74.66 Aligned_cols=94 Identities=17% Similarity=0.297 Sum_probs=58.2
Q ss_pred eeEeecCCCccchhhhccCC---CeeEEEecCCCCCCchhHhhhcc----ccccc-cccCCCCCCCC-CccchhhhcCcc
Q 009719 375 RNIMDMNAFFGGFAAALTSD---PVWVMNVVPARKSSTLSVIYDRG----LIGVY-HDWCEPFSTYP-RTYDLIHVSGIE 445 (527)
Q Consensus 375 RnvmDm~ag~GgFaAaL~~~---~VwvMnvvp~~~~ntl~vi~eRG----LiG~~-hdwce~fstYP-rtyDLiHa~~~f 445 (527)
..|||+|||+|+++..|... .|..+.+. ++.+..+-+|- -+-.. .|.. .. .|| .+||+|++...+
T Consensus 54 ~~VLDiGcG~G~~a~~la~~~~~~v~giD~s----~~~~~~a~~~~~~~~~i~~~~~D~~-~~-~~~~~~FD~V~s~~~l 127 (263)
T PTZ00098 54 SKVLDIGSGLGGGCKYINEKYGAHVHGVDIC----EKMVNIAKLRNSDKNKIEFEANDIL-KK-DFPENTFDMIYSRDAI 127 (263)
T ss_pred CEEEEEcCCCChhhHHHHhhcCCEEEEEECC----HHHHHHHHHHcCcCCceEEEECCcc-cC-CCCCCCeEEEEEhhhH
Confidence 46999999999998888543 23333332 23334443331 11111 1111 11 245 799999997665
Q ss_pred ccccCCCCCCCCCcccccceeecccccCCcEEEEeC
Q 009719 446 SLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 481 (527)
Q Consensus 446 s~~~~~~~~~~rC~~~~illEmDRILRP~G~~iird 481 (527)
-++. .-+...+|=|+-|+|+|||++++.|
T Consensus 128 ~h~~-------~~d~~~~l~~i~r~LkPGG~lvi~d 156 (263)
T PTZ00098 128 LHLS-------YADKKKLFEKCYKWLKPNGILLITD 156 (263)
T ss_pred HhCC-------HHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 4431 1234678999999999999999986
No 85
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=97.31 E-value=0.00058 Score=67.21 Aligned_cols=84 Identities=15% Similarity=0.074 Sum_probs=60.0
Q ss_pred cccccccCCeeEEeeccCcChHHHHHHH-HHcCC----------------CcEEeeccccCCCCC-CCcccEEEecCccc
Q 009719 146 FGGSMLSENILTLSFAPRDSHKAQIQFA-LERGI----------------PAFVAMLGTRRLPFP-AFSFDIVHCSRCLI 207 (527)
Q Consensus 146 fga~Ll~r~V~~msiAp~D~seaqvq~A-~eRg~----------------pa~~~v~dae~LPFp-D~SFDlV~cs~~l~ 207 (527)
-+.+|.++|-.+..+ |.|+..++.| .+.++ .+.+.++|...++.. ...||.|.-..+++
T Consensus 48 da~~LA~~G~~V~gv---D~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~i~D~~~~~ 124 (213)
T TIGR03840 48 DLAWLAEQGHRVLGV---ELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLGPVDAVYDRAALI 124 (213)
T ss_pred HHHHHHhCCCeEEEE---eCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCCCcCEEEechhhc
Confidence 356777886654444 6677777764 33333 345677888777653 46799999888888
Q ss_pred ccccCh-HHHHHHHhhcccCCcEEEE
Q 009719 208 PFTAYN-ATYLIEVDRLLRPGGYLVI 232 (527)
Q Consensus 208 hw~d~~-~~aL~Ei~RVLRPGG~lvi 232 (527)
|++... ..++..+.++|||||++++
T Consensus 125 ~l~~~~R~~~~~~l~~lLkpgG~~ll 150 (213)
T TIGR03840 125 ALPEEMRQRYAAHLLALLPPGARQLL 150 (213)
T ss_pred cCCHHHHHHHHHHHHHHcCCCCeEEE
Confidence 987654 3599999999999997555
No 86
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=97.29 E-value=5e-05 Score=73.13 Aligned_cols=93 Identities=17% Similarity=0.257 Sum_probs=59.3
Q ss_pred eeEeecCCCccchhhhccCCCeeEEEecCCCCC-CchhH----hhhcccc---ccccccCCCCCCCCCccchhhhcCccc
Q 009719 375 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSV----IYDRGLI---GVYHDWCEPFSTYPRTYDLIHVSGIES 446 (527)
Q Consensus 375 RnvmDm~ag~GgFaAaL~~~~VwvMnvvp~~~~-ntl~v----i~eRGLi---G~~hdwce~fstYPrtyDLiHa~~~fs 446 (527)
-+|||+|||.|.++..|.++.. +|.-.|.. +.+.. +-++|+- ....|..+ + .++.+||+|-+..+|-
T Consensus 32 ~~vLDiGcG~G~~a~~La~~g~---~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~-~-~~~~~fD~I~~~~~~~ 106 (197)
T PRK11207 32 GKTLDLGCGNGRNSLYLAANGF---DVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNN-L-TFDGEYDFILSTVVLM 106 (197)
T ss_pred CcEEEECCCCCHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhh-C-CcCCCcCEEEEecchh
Confidence 4799999999999999987643 22222322 22222 2334442 22234332 2 2467899999987764
Q ss_pred cccCCCCCCCCCcccccceeecccccCCcEEEE
Q 009719 447 LIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVV 479 (527)
Q Consensus 447 ~~~~~~~~~~rC~~~~illEmDRILRP~G~~ii 479 (527)
.. +.-....++-+|-|.|+|||++++
T Consensus 107 ~~-------~~~~~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 107 FL-------EAKTIPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred hC-------CHHHHHHHHHHHHHHcCCCcEEEE
Confidence 32 223456899999999999999654
No 87
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=97.27 E-value=0.00015 Score=74.48 Aligned_cols=100 Identities=26% Similarity=0.283 Sum_probs=70.9
Q ss_pred CCCCCccchh------------hhccccccccCCeeEEeeccCcChHHHHHHHHHcCCCcEEeeccccCCCCCCCcccEE
Q 009719 133 PVPWPESLSK------------VASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIV 200 (527)
Q Consensus 133 P~~WP~Srd~------------vgsfga~Ll~r~V~~msiAp~D~seaqvq~A~eRg~pa~~~v~dae~LPFpD~SFDlV 200 (527)
+-+||+=|-. +|+.-+..+..+-. +.+.+-|.+...+..|++.|.. ..+.+|+..+||++.+||.+
T Consensus 30 ~~~Wp~v~qfl~~~~~gsv~~d~gCGngky~~~~p~-~~~ig~D~c~~l~~~ak~~~~~-~~~~ad~l~~p~~~~s~d~~ 107 (293)
T KOG1331|consen 30 AAPWPMVRQFLDSQPTGSVGLDVGCGNGKYLGVNPL-CLIIGCDLCTGLLGGAKRSGGD-NVCRADALKLPFREESFDAA 107 (293)
T ss_pred cCccHHHHHHHhccCCcceeeecccCCcccCcCCCc-ceeeecchhhhhccccccCCCc-eeehhhhhcCCCCCCccccc
Confidence 4567765544 45544444444421 2344457776666667655543 56778999999999999999
Q ss_pred EecCcccccccCh--HHHHHHHhhcccCCcEEEEec
Q 009719 201 HCSRCLIPFTAYN--ATYLIEVDRLLRPGGYLVISG 234 (527)
Q Consensus 201 ~cs~~l~hw~d~~--~~aL~Ei~RVLRPGG~lviS~ 234 (527)
+...++|||.... ..++.|+.|+|||||...+..
T Consensus 108 lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyv 143 (293)
T KOG1331|consen 108 LSIAVIHHLSTRERRERALEELLRVLRPGGNALVYV 143 (293)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEE
Confidence 9999999987554 359999999999999976644
No 88
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=97.26 E-value=0.00023 Score=67.39 Aligned_cols=110 Identities=18% Similarity=0.189 Sum_probs=65.5
Q ss_pred eeeEeecCCCccchhhhccCC-C-eeEEEecCCCCCCchhHhh----hccc--cccccccCCCCCCCCCccchhhhcCcc
Q 009719 374 IRNIMDMNAFFGGFAAALTSD-P-VWVMNVVPARKSSTLSVIY----DRGL--IGVYHDWCEPFSTYPRTYDLIHVSGIE 445 (527)
Q Consensus 374 iRnvmDm~ag~GgFaAaL~~~-~-VwvMnvvp~~~~ntl~vi~----eRGL--iG~~hdwce~fstYPrtyDLiHa~~~f 445 (527)
-.+|+|+|||.|.++.++... | .=|..+-... ..+..+- ..|+ +-++. -.....++..||+|.+++..
T Consensus 32 ~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~--~~~~~a~~n~~~~~~~~i~~~~--~d~~~~~~~~~D~v~~~~~~ 107 (187)
T PRK08287 32 AKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNP--DALRLIKENRQRFGCGNIDIIP--GEAPIELPGKADAIFIGGSG 107 (187)
T ss_pred CCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCH--HHHHHHHHHHHHhCCCCeEEEe--cCchhhcCcCCCEEEECCCc
Confidence 357999999999998777442 2 2222222211 2222221 1232 11111 01112345789998875332
Q ss_pred ccccCCCCCCCCCcccccceeecccccCCcEEEEeC-CHHHHHHHHHHHhcCCce
Q 009719 446 SLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD-SPEVIDKVSRIANTVRWT 499 (527)
Q Consensus 446 s~~~~~~~~~~rC~~~~illEmDRILRP~G~~iird-~~~~~~~i~~i~~~l~W~ 499 (527)
..+..++-++-|+|+|||++++.. ..+...++.+++++..++
T Consensus 108 ------------~~~~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~~g~~ 150 (187)
T PRK08287 108 ------------GNLTAIIDWSLAHLHPGGRLVLTFILLENLHSALAHLEKCGVS 150 (187)
T ss_pred ------------cCHHHHHHHHHHhcCCCeEEEEEEecHhhHHHHHHHHHHCCCC
Confidence 235668888999999999999976 455667777788777774
No 89
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=97.25 E-value=3.5e-05 Score=65.80 Aligned_cols=98 Identities=20% Similarity=0.305 Sum_probs=58.1
Q ss_pred eeEeecCCCccchhhhccC--CCeeEEEecCCCCCCchhHhhh----ccc---ccc-ccccCCCCCCCCCccchhhhcC-
Q 009719 375 RNIMDMNAFFGGFAAALTS--DPVWVMNVVPARKSSTLSVIYD----RGL---IGV-YHDWCEPFSTYPRTYDLIHVSG- 443 (527)
Q Consensus 375 RnvmDm~ag~GgFaAaL~~--~~VwvMnvvp~~~~ntl~vi~e----RGL---iG~-~hdwce~fstYPrtyDLiHa~~- 443 (527)
..|||+|||.|.++.+|.+ ...=|..|=+.. ..+..+-+ .++ |-+ ..|+... ...+..||+|.+..
T Consensus 3 ~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~--~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~D~v~~~~~ 79 (112)
T PF12847_consen 3 GRVLDLGCGTGRLSIALARLFPGARVVGVDISP--EMLEIARERAAEEGLSDRITFVQGDAEFD-PDFLEPFDLVICSGF 79 (112)
T ss_dssp CEEEEETTTTSHHHHHHHHHHTTSEEEEEESSH--HHHHHHHHHHHHTTTTTTEEEEESCCHGG-TTTSSCEEEEEECSG
T ss_pred CEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCH--HHHHHHHHHHHhcCCCCCeEEEECccccC-cccCCCCCEEEECCC
Confidence 3689999999999999987 444444443322 22333222 233 111 1233111 33455699999998
Q ss_pred ccccccCCCCCCCCCcccccceeecccccCCcEEEEeC
Q 009719 444 IESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 481 (527)
Q Consensus 444 ~fs~~~~~~~~~~rC~~~~illEmDRILRP~G~~iird 481 (527)
.+..+. +.-....+|=++-+.|+|||+++|++
T Consensus 80 ~~~~~~------~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 80 TLHFLL------PLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp SGGGCC------HHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccc------chhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 222121 11223456778999999999999974
No 90
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=97.24 E-value=0.00019 Score=72.34 Aligned_cols=101 Identities=14% Similarity=0.166 Sum_probs=59.3
Q ss_pred eeeEeecCCCccchhhhccCC--CeeEEEecCCCCC-CchhHhhhccc-cccc-cccCCCCCCCC-CccchhhhcCcccc
Q 009719 374 IRNIMDMNAFFGGFAAALTSD--PVWVMNVVPARKS-STLSVIYDRGL-IGVY-HDWCEPFSTYP-RTYDLIHVSGIESL 447 (527)
Q Consensus 374 iRnvmDm~ag~GgFaAaL~~~--~VwvMnvvp~~~~-ntl~vi~eRGL-iG~~-hdwce~fstYP-rtyDLiHa~~~fs~ 447 (527)
-.+|||+|||.|.+++.|.+. +.--.+|+-.|-. +.+..+-+|.- +... .|-. .++ ++ .+||+|.+. |+
T Consensus 86 ~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~-~lp-~~~~sfD~I~~~--~~- 160 (272)
T PRK11088 86 ATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSH-RLP-FADQSLDAIIRI--YA- 160 (272)
T ss_pred CCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecc-cCC-CcCCceeEEEEe--cC-
Confidence 356999999999999888542 1101234444443 66666655531 1111 1211 222 33 789999753 32
Q ss_pred ccCCCCCCCCCcccccceeecccccCCcEEEEeCCH-HHHHHHHHH
Q 009719 448 IKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP-EVIDKVSRI 492 (527)
Q Consensus 448 ~~~~~~~~~rC~~~~illEmDRILRP~G~~iird~~-~~~~~i~~i 492 (527)
...+-|+.|+|+|||++|+.... +.+.+++.+
T Consensus 161 -------------~~~~~e~~rvLkpgG~li~~~p~~~~l~el~~~ 193 (272)
T PRK11088 161 -------------PCKAEELARVVKPGGIVITVTPGPRHLFELKGL 193 (272)
T ss_pred -------------CCCHHHHHhhccCCCEEEEEeCCCcchHHHHHH
Confidence 12356899999999999988532 334444443
No 91
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=97.23 E-value=0.00014 Score=69.71 Aligned_cols=131 Identities=15% Similarity=0.199 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHHhhhccCCCCeeeEeecCCCccchhhhcc--CCCeeEEEecCCCCCCchh----Hhhhccc--ccccc
Q 009719 352 RRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALT--SDPVWVMNVVPARKSSTLS----VIYDRGL--IGVYH 423 (527)
Q Consensus 352 ~~W~~~v~~Y~~~l~~~i~~~~iRnvmDm~ag~GgFaAaL~--~~~VwvMnvvp~~~~ntl~----vi~eRGL--iG~~h 423 (527)
..|++.+-.=..++. .+. =.+|+|+|||.|.++..|. ....-|.-|=+.. +.+. .+-+.|+ +-+.+
T Consensus 25 ~~~~~~~~d~i~~~~-~~~---~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~--~~~~~a~~~~~~~~~~~i~~i~ 98 (181)
T TIGR00138 25 EIWERHILDSLKLLE-YLD---GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNH--KKVAFLREVKAELGLNNVEIVN 98 (181)
T ss_pred HHHHHHHHHHHHHHH-hcC---CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcH--HHHHHHHHHHHHhCCCCeEEEe
Confidence 467766644332222 233 2589999999998776553 2221222222111 2222 1223344 22221
Q ss_pred -ccCCCCCCCCCccchhhhcCccccccCCCCCCCCCcccccceeecccccCCcEEEEeCCHHHHHHHHHHHhcCC-ceeE
Q 009719 424 -DWCEPFSTYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRIANTVR-WTAA 501 (527)
Q Consensus 424 -dwce~fstYPrtyDLiHa~~~fs~~~~~~~~~~rC~~~~illEmDRILRP~G~~iird~~~~~~~i~~i~~~l~-W~~~ 501 (527)
|. +.+. ...+||+|-+.. +. .+.+++-++.|+|+|||.+++........++..+.+.++ |...
T Consensus 99 ~d~-~~~~-~~~~fD~I~s~~-~~------------~~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~e~~~~~~~~ 163 (181)
T TIGR00138 99 GRA-EDFQ-HEEQFDVITSRA-LA------------SLNVLLELTLNLLKVGGYFLAYKGKKYLDEIEEAKRKCQVLGVE 163 (181)
T ss_pred cch-hhcc-ccCCccEEEehh-hh------------CHHHHHHHHHHhcCCCCEEEEEcCCCcHHHHHHHHHhhhhcCce
Confidence 22 1121 347999997753 22 245677788999999999999987666777777766543 4444
Q ss_pred Ee
Q 009719 502 VH 503 (527)
Q Consensus 502 ~~ 503 (527)
..
T Consensus 164 ~~ 165 (181)
T TIGR00138 164 PL 165 (181)
T ss_pred Ee
Confidence 43
No 92
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=97.23 E-value=0.00017 Score=69.84 Aligned_cols=125 Identities=12% Similarity=0.110 Sum_probs=73.4
Q ss_pred CeeeEeecCCCccchhhhccCC----CeeEEEecCCCCCCchhHhh----hccc--cccc-cccCCCCCC-C-CCccchh
Q 009719 373 AIRNIMDMNAFFGGFAAALTSD----PVWVMNVVPARKSSTLSVIY----DRGL--IGVY-HDWCEPFST-Y-PRTYDLI 439 (527)
Q Consensus 373 ~iRnvmDm~ag~GgFaAaL~~~----~VwvMnvvp~~~~ntl~vi~----eRGL--iG~~-hdwce~fst-Y-PrtyDLi 439 (527)
.-.+|||+|||.|.++..|... .|+-+-..| +.+..+- +.|+ +-+. .|..+.++. + +.+||+|
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~----~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V 115 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHE----PGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRI 115 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEech----HHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceE
Confidence 3478999999999998888543 233333322 2222221 1233 1111 222123331 4 4789998
Q ss_pred hhcCccccccCCCCCCCCCcccccceeecccccCCcEEEEe-CCHHHHHHHHHHHhcCCceeEE
Q 009719 440 HVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR-DSPEVIDKVSRIANTVRWTAAV 502 (527)
Q Consensus 440 Ha~~~fs~~~~~~~~~~rC~~~~illEmDRILRP~G~~iir-d~~~~~~~i~~i~~~l~W~~~~ 502 (527)
-+.... .|........+.....+|-|+.|+|+|||.++|. +.......+.+.+..--|.+.+
T Consensus 116 ~~~~~~-p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~g~~~~~ 178 (202)
T PRK00121 116 YLNFPD-PWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLSAEGGFLVS 178 (202)
T ss_pred EEECCC-CCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHhCcccccc
Confidence 764322 2321011122334577899999999999999997 5666777777777777787764
No 93
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=97.19 E-value=0.001 Score=68.02 Aligned_cols=72 Identities=15% Similarity=0.126 Sum_probs=48.3
Q ss_pred eccCcChHHHHHHHHHc----CCCcEEeeccccCCCCCCCcccEEEecCcccccccChHHHHHHHhhcccCCcEEEEecC
Q 009719 160 FAPRDSHKAQIQFALER----GIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 235 (527)
Q Consensus 160 iAp~D~seaqvq~A~eR----g~pa~~~v~dae~LPFpD~SFDlV~cs~~l~hw~d~~~~aL~Ei~RVLRPGG~lviS~p 235 (527)
+...|.++.+++.|+++ ++...+.......+++.+++||+|+|.....+ ...++.++.|+|||||+|++|+.
T Consensus 185 V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~~~----l~~ll~~~~~~LkpgG~li~sgi 260 (288)
T TIGR00406 185 VVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILAEV----IKELYPQFSRLVKPGGWLILSGI 260 (288)
T ss_pred EEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCHHH----HHHHHHHHHHHcCCCcEEEEEeC
Confidence 33447788888888764 33322211111134566789999999754322 22489999999999999999986
No 94
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=97.18 E-value=0.00026 Score=67.75 Aligned_cols=93 Identities=17% Similarity=0.220 Sum_probs=57.7
Q ss_pred eeEeecCCCccchhhhccCCC----eeEEEecCCCCCCchhHhhhcc---ccccccccCCCCCCCCCccchhhhcCcccc
Q 009719 375 RNIMDMNAFFGGFAAALTSDP----VWVMNVVPARKSSTLSVIYDRG---LIGVYHDWCEPFSTYPRTYDLIHVSGIESL 447 (527)
Q Consensus 375 RnvmDm~ag~GgFaAaL~~~~----VwvMnvvp~~~~ntl~vi~eRG---LiG~~hdwce~fstYPrtyDLiHa~~~fs~ 447 (527)
..|||+|||.|.|...|.+.. |..+-+.| ..+...-++. +.-+..|. +.++..+.+||+|.+..++..
T Consensus 36 ~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~----~~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~fD~vi~~~~l~~ 110 (240)
T TIGR02072 36 ASVLDIGCGTGYLTRALLKRFPQAEFIALDISA----GMLAQAKTKLSENVQFICGDA-EKLPLEDSSFDLIVSNLALQW 110 (240)
T ss_pred CeEEEECCCccHHHHHHHHhCCCCcEEEEeChH----HHHHHHHHhcCCCCeEEecch-hhCCCCCCceeEEEEhhhhhh
Confidence 579999999999998886542 22222111 2222222221 11111121 223333578999999887753
Q ss_pred ccCCCCCCCCCcccccceeecccccCCcEEEEeC
Q 009719 448 IKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 481 (527)
Q Consensus 448 ~~~~~~~~~rC~~~~illEmDRILRP~G~~iird 481 (527)
.. +...+|-++.|+|+|||++++..
T Consensus 111 ~~---------~~~~~l~~~~~~L~~~G~l~~~~ 135 (240)
T TIGR02072 111 CD---------DLSQALSELARVLKPGGLLAFST 135 (240)
T ss_pred cc---------CHHHHHHHHHHHcCCCcEEEEEe
Confidence 32 34679999999999999999974
No 95
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=97.15 E-value=0.00054 Score=71.82 Aligned_cols=91 Identities=24% Similarity=0.299 Sum_probs=63.9
Q ss_pred ccccccCCeeEE-eeccCcChHHHHHHHHHcC-----------CCcEEeecc------ccCCCCCCCcccEEEecCcccc
Q 009719 147 GGSMLSENILTL-SFAPRDSHKAQIQFALERG-----------IPAFVAMLG------TRRLPFPAFSFDIVHCSRCLIP 208 (527)
Q Consensus 147 ga~Ll~r~V~~m-siAp~D~seaqvq~A~eRg-----------~pa~~~v~d------ae~LPFpD~SFDlV~cs~~l~h 208 (527)
||-|++-+...+ .+...|+.+.-|+.|++|. .++.|..+| ...++++|.+||+|-|.+|+|.
T Consensus 129 GGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp~fDivScQF~~HY 208 (389)
T KOG1975|consen 129 GGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDPRFDIVSCQFAFHY 208 (389)
T ss_pred cccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCCCcceeeeeeeEee
Confidence 556665433322 2455577777788887651 245666665 2557999999999999999855
Q ss_pred cccCh---HHHHHHHhhcccCCcEEEEecCCC
Q 009719 209 FTAYN---ATYLIEVDRLLRPGGYLVISGPPV 237 (527)
Q Consensus 209 w~d~~---~~aL~Ei~RVLRPGG~lviS~pp~ 237 (527)
=.... ..+|+-+.+-|||||+|+-+.|..
T Consensus 209 aFetee~ar~~l~Nva~~LkpGG~FIgTiPds 240 (389)
T KOG1975|consen 209 AFETEESARIALRNVAKCLKPGGVFIGTIPDS 240 (389)
T ss_pred eeccHHHHHHHHHHHHhhcCCCcEEEEecCcH
Confidence 32222 259999999999999999999843
No 96
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=97.15 E-value=0.00087 Score=68.54 Aligned_cols=79 Identities=23% Similarity=0.368 Sum_probs=53.6
Q ss_pred EeeccccCCCCCCCcccEEEecCcccccccChHHHHHHHhhcccCCcEEEEecCCCCCCCchhHHHHHHHHHHhcceEEe
Q 009719 182 VAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELI 261 (527)
Q Consensus 182 ~~v~dae~LPFpD~SFDlV~cs~~l~hw~d~~~~aL~Ei~RVLRPGG~lviS~pp~~~~~~~~~w~~i~~l~~~mcW~~~ 261 (527)
+.+.|..++|.+|+|.|++++.+.|+- .+-..++.|++|||||||.|+|..-...+.+-. . ..+.+ ..|.+...
T Consensus 214 V~~cDm~~vPl~d~svDvaV~CLSLMg--tn~~df~kEa~RiLk~gG~l~IAEv~SRf~dv~-~--f~r~l-~~lGF~~~ 287 (325)
T KOG3045|consen 214 VIACDMRNVPLEDESVDVAVFCLSLMG--TNLADFIKEANRILKPGGLLYIAEVKSRFSDVK-G--FVRAL-TKLGFDVK 287 (325)
T ss_pred eeeccccCCcCccCcccEEEeeHhhhc--ccHHHHHHHHHHHhccCceEEEEehhhhcccHH-H--HHHHH-HHcCCeee
Confidence 456788899999999999997655533 444459999999999999999977533332111 1 22233 45666665
Q ss_pred eeecc
Q 009719 262 AVDGN 266 (527)
Q Consensus 262 ~~~~~ 266 (527)
.....
T Consensus 288 ~~d~~ 292 (325)
T KOG3045|consen 288 HKDVS 292 (325)
T ss_pred ehhhh
Confidence 55443
No 97
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=97.14 E-value=0.00021 Score=76.14 Aligned_cols=93 Identities=18% Similarity=0.266 Sum_probs=61.6
Q ss_pred eeEeecCCCccchhhhccCC-CeeEEEecCCCC-CCchhHhhhcc--cc--ccccccCCCCCCCCCccchhhhcCccccc
Q 009719 375 RNIMDMNAFFGGFAAALTSD-PVWVMNVVPARK-SSTLSVIYDRG--LI--GVYHDWCEPFSTYPRTYDLIHVSGIESLI 448 (527)
Q Consensus 375 RnvmDm~ag~GgFaAaL~~~-~VwvMnvvp~~~-~ntl~vi~eRG--Li--G~~hdwce~fstYPrtyDLiHa~~~fs~~ 448 (527)
..|||+|||.|+++..+.+. ++- |+-.+- +.++..+-+|. +- -...|+ ...+.+||+|.+..+|.+.
T Consensus 169 ~rVLDIGcG~G~~a~~la~~~g~~---V~giDlS~~~l~~A~~~~~~l~v~~~~~D~----~~l~~~fD~Ivs~~~~ehv 241 (383)
T PRK11705 169 MRVLDIGCGWGGLARYAAEHYGVS---VVGVTISAEQQKLAQERCAGLPVEIRLQDY----RDLNGQFDRIVSVGMFEHV 241 (383)
T ss_pred CEEEEeCCCccHHHHHHHHHCCCE---EEEEeCCHHHHHHHHHHhccCeEEEEECch----hhcCCCCCEEEEeCchhhC
Confidence 47999999999999888653 442 333332 36666655543 21 111222 2235789999988877643
Q ss_pred cCCCCCCCCCcccccceeecccccCCcEEEEeC
Q 009719 449 KNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 481 (527)
Q Consensus 449 ~~~~~~~~rC~~~~illEmDRILRP~G~~iird 481 (527)
. .-....++-++.|+|+|||++++.+
T Consensus 242 g-------~~~~~~~l~~i~r~LkpGG~lvl~~ 267 (383)
T PRK11705 242 G-------PKNYRTYFEVVRRCLKPDGLFLLHT 267 (383)
T ss_pred C-------hHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 1 2235678999999999999999963
No 98
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=97.14 E-value=0.00029 Score=73.41 Aligned_cols=96 Identities=14% Similarity=0.108 Sum_probs=59.0
Q ss_pred eeEeecCCCccchhhhccCCCe-eEEEecCCCCC-CchhHhhh----ccccccccccCCCCCCCCCccchhhhcCccccc
Q 009719 375 RNIMDMNAFFGGFAAALTSDPV-WVMNVVPARKS-STLSVIYD----RGLIGVYHDWCEPFSTYPRTYDLIHVSGIESLI 448 (527)
Q Consensus 375 RnvmDm~ag~GgFaAaL~~~~V-wvMnvvp~~~~-ntl~vi~e----RGLiG~~hdwce~fstYPrtyDLiHa~~~fs~~ 448 (527)
+.|+|+|||.|.++.+|..... -|.-|=|...- .+...+-. .+-+....-=-|.++ .+.+||+|-|.+++-++
T Consensus 123 ~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp-~~~~FD~V~s~gvL~H~ 201 (314)
T TIGR00452 123 RTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLH-ELYAFDTVFSMGVLYHR 201 (314)
T ss_pred CEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCC-CCCCcCEEEEcchhhcc
Confidence 6899999999999887765542 35555444321 22111111 111111100011222 13589999999887654
Q ss_pred cCCCCCCCCCcccccceeecccccCCcEEEEe
Q 009719 449 KNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 480 (527)
Q Consensus 449 ~~~~~~~~rC~~~~illEmDRILRP~G~~iir 480 (527)
. +..++|-|+-|+|||||.+|+.
T Consensus 202 ~---------dp~~~L~el~r~LkpGG~Lvle 224 (314)
T TIGR00452 202 K---------SPLEHLKQLKHQLVIKGELVLE 224 (314)
T ss_pred C---------CHHHHHHHHHHhcCCCCEEEEE
Confidence 3 4578999999999999999986
No 99
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=97.12 E-value=0.00032 Score=69.39 Aligned_cols=115 Identities=17% Similarity=0.247 Sum_probs=67.1
Q ss_pred cCCCCeeeEeecCCCccchhhhccCC----CeeEEEecCCCCCCchhHhhhcc----c-cccccccCCCCCCCCCccchh
Q 009719 369 LGTPAIRNIMDMNAFFGGFAAALTSD----PVWVMNVVPARKSSTLSVIYDRG----L-IGVYHDWCEPFSTYPRTYDLI 439 (527)
Q Consensus 369 i~~~~iRnvmDm~ag~GgFaAaL~~~----~VwvMnvvp~~~~ntl~vi~eRG----L-iG~~hdwce~fstYPrtyDLi 439 (527)
+....-.+|+|+|||.|.++..|.+. .|...-..| .-+..+-++- + .|-..+| . .+.+||+|
T Consensus 27 ~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~----~~i~~a~~~~~~~~~~~~d~~~~----~-~~~~fD~v 97 (258)
T PRK01683 27 VPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSP----AMLAEARSRLPDCQFVEADIASW----Q-PPQALDLI 97 (258)
T ss_pred CCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCH----HHHHHHHHhCCCCeEEECchhcc----C-CCCCccEE
Confidence 33344578999999999999888643 233322211 2222222221 1 1222222 1 24689999
Q ss_pred hhcCccccccCCCCCCCCCcccccceeecccccCCcEEEEeC--CH--HHHHHHHHHHhcCCceeE
Q 009719 440 HVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD--SP--EVIDKVSRIANTVRWTAA 501 (527)
Q Consensus 440 Ha~~~fs~~~~~~~~~~rC~~~~illEmDRILRP~G~~iird--~~--~~~~~i~~i~~~l~W~~~ 501 (527)
+++..|.... +...+|-+|-|+|+|||.+++.- .. .....+++++....|...
T Consensus 98 ~~~~~l~~~~---------d~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 154 (258)
T PRK01683 98 FANASLQWLP---------DHLELFPRLVSLLAPGGVLAVQMPDNLDEPSHVLMREVAENGPWEQN 154 (258)
T ss_pred EEccChhhCC---------CHHHHHHHHHHhcCCCcEEEEECCCCCCCHHHHHHHHHHccCchHHH
Confidence 9998876432 23678999999999999999963 11 111234455555556543
No 100
>PRK14968 putative methyltransferase; Provisional
Probab=97.10 E-value=0.00052 Score=63.77 Aligned_cols=141 Identities=17% Similarity=0.173 Sum_probs=81.0
Q ss_pred eeeEeecCCCccchhhhccCCCeeEEEecCCCCC-CchhHhh---------hccccccccccCCCCCCCCCccchhhhcC
Q 009719 374 IRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIY---------DRGLIGVYHDWCEPFSTYPRTYDLIHVSG 443 (527)
Q Consensus 374 iRnvmDm~ag~GgFaAaL~~~~VwvMnvvp~~~~-ntl~vi~---------eRGLiG~~hdwce~fstYPrtyDLiHa~~ 443 (527)
-..|||+|||.|.++..|...+. +|.-.+-. +.+..+- +||+.-+.+|+.+.+. +.+||+|=++.
T Consensus 24 ~~~vLd~G~G~G~~~~~l~~~~~---~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~d~vi~n~ 98 (188)
T PRK14968 24 GDRVLEVGTGSGIVAIVAAKNGK---KVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFR--GDKFDVILFNP 98 (188)
T ss_pred CCEEEEEccccCHHHHHHHhhcc---eEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccccc--ccCceEEEECC
Confidence 34799999999999999876643 33333322 3333331 2224444566666543 24799985543
Q ss_pred ccccccCCC-------------CCCCCCcccccceeecccccCCcEEEEeC-CHHHHHHHHHHHhcCCceeEEecCCCCC
Q 009719 444 IESLIKNPG-------------SNKNSCSLVDLMVEMDRMLRPEGTVVVRD-SPEVIDKVSRIANTVRWTAAVHDKEPGS 509 (527)
Q Consensus 444 ~fs~~~~~~-------------~~~~rC~~~~illEmDRILRP~G~~iird-~~~~~~~i~~i~~~l~W~~~~~~~e~~~ 509 (527)
-|.... +. .......+..++-++.|+|+|||.+++-. .....+++.+++...-|++.....+...
T Consensus 99 p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~ 177 (188)
T PRK14968 99 PYLPTE-EEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTGEDEVLEYLEKLGFEAEVVAEEKFP 177 (188)
T ss_pred CcCCCC-chhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCCHHHHHHHHHHCCCeeeeeeecccC
Confidence 332100 00 00012224568899999999999987642 2233456777888788876654334344
Q ss_pred CCCceEEEEEe
Q 009719 510 NGREKILVATK 520 (527)
Q Consensus 510 ~~~ekiLi~~K 520 (527)
.+.=.+++.+|
T Consensus 178 ~~~~~~~~~~~ 188 (188)
T PRK14968 178 FEELIVLELVK 188 (188)
T ss_pred CceEEEEEEeC
Confidence 44444555554
No 101
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=97.09 E-value=0.00086 Score=68.50 Aligned_cols=87 Identities=17% Similarity=0.204 Sum_probs=59.1
Q ss_pred hhccccccccCC--eeEEeeccCcChHHHHHHHHHc----CCC--cEEeeccccCCCCCCCcccEEEecCcccccccCh-
Q 009719 143 VASFGGSMLSEN--ILTLSFAPRDSHKAQIQFALER----GIP--AFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYN- 213 (527)
Q Consensus 143 vgsfga~Ll~r~--V~~msiAp~D~seaqvq~A~eR----g~p--a~~~v~dae~LPFpD~SFDlV~cs~~l~hw~d~~- 213 (527)
.|.++..++.+. ..+..+ |. +.+++.|+++ |+. +.+..+|....++++ +|+|++++++|+|.+..
T Consensus 160 ~G~~~~~~~~~~p~~~~~~~---D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~--~D~v~~~~~lh~~~~~~~ 233 (306)
T TIGR02716 160 IGDISAAMLKHFPELDSTIL---NL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPE--ADAVLFCRILYSANEQLS 233 (306)
T ss_pred hhHHHHHHHHHCCCCEEEEE---ec-HHHHHHHHHHHHhCCccceEEEEecCccCCCCCC--CCEEEeEhhhhcCChHHH
Confidence 444444555542 222222 43 4567666543 443 445667877677764 69999999999897654
Q ss_pred HHHHHHHhhcccCCcEEEEecC
Q 009719 214 ATYLIEVDRLLRPGGYLVISGP 235 (527)
Q Consensus 214 ~~aL~Ei~RVLRPGG~lviS~p 235 (527)
..+|+++.|+|||||++++...
T Consensus 234 ~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 234 TIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred HHHHHHHHHhcCCCCEEEEEEe
Confidence 3599999999999999999864
No 102
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=97.09 E-value=0.00011 Score=73.18 Aligned_cols=113 Identities=24% Similarity=0.306 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHhhhccCCCCeeeEeecCCCccchhhhccCCCeeEEEecCCCCC-CchhHhhhc----ccc--ccccc
Q 009719 352 RRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GLI--GVYHD 424 (527)
Q Consensus 352 ~~W~~~v~~Y~~~l~~~i~~~~iRnvmDm~ag~GgFaAaL~~~~VwvMnvvp~~~~-ntl~vi~eR----GLi--G~~hd 424 (527)
+.|++.+.+... ...+ ..|||++||+|-++..|.+.-----.|+-.|-. +-|.++-+| |+. =..+.
T Consensus 33 ~~wr~~~~~~~~-----~~~g--~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~ 105 (233)
T PF01209_consen 33 RRWRRKLIKLLG-----LRPG--DRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQG 105 (233)
T ss_dssp ----SHHHHHHT-------S----EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-
T ss_pred HHHHHHHHhccC-----CCCC--CEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEc
Confidence 788887755432 2223 289999999999888775431111133444433 666666554 221 11111
Q ss_pred cCCCCCCCC-CccchhhhcCccccccCCCCCCCCCcccccceeecccccCCcEEEEeC
Q 009719 425 WCEPFSTYP-RTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 481 (527)
Q Consensus 425 wce~fstYP-rtyDLiHa~~~fs~~~~~~~~~~rC~~~~illEmDRILRP~G~~iird 481 (527)
=.|.++ || .+||.|=++..+-.. .+....|-||=|+|||||.++|=|
T Consensus 106 da~~lp-~~d~sfD~v~~~fglrn~---------~d~~~~l~E~~RVLkPGG~l~ile 153 (233)
T PF01209_consen 106 DAEDLP-FPDNSFDAVTCSFGLRNF---------PDRERALREMYRVLKPGGRLVILE 153 (233)
T ss_dssp BTTB---S-TT-EEEEEEES-GGG----------SSHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CHHHhc-CCCCceeEEEHHhhHHhh---------CCHHHHHHHHHHHcCCCeEEEEee
Confidence 134455 45 899999887666533 346779999999999999998865
No 103
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=97.07 E-value=0.00034 Score=73.18 Aligned_cols=95 Identities=12% Similarity=0.146 Sum_probs=63.3
Q ss_pred eeEeecCCCccchhhhccCCCeeEEEecCCCCC-CchhHhhhc----cc---cccccccCCCCCCCCCccchhhhcCccc
Q 009719 375 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GL---IGVYHDWCEPFSTYPRTYDLIHVSGIES 446 (527)
Q Consensus 375 RnvmDm~ag~GgFaAaL~~~~VwvMnvvp~~~~-ntl~vi~eR----GL---iG~~hdwce~fstYPrtyDLiHa~~~fs 446 (527)
..|||+|||.|.|+.+|..... +|.-+|.. ..+.++-++ ++ |-..+.=.|.++..+.+||+|=|..++.
T Consensus 133 ~~ILDIGCG~G~~s~~La~~g~---~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLe 209 (322)
T PLN02396 133 LKFIDIGCGGGLLSEPLARMGA---TVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIE 209 (322)
T ss_pred CEEEEeeCCCCHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHH
Confidence 3799999999999988876542 33333433 445555443 12 1112111133333347999999988887
Q ss_pred cccCCCCCCCCCcccccceeecccccCCcEEEEeC
Q 009719 447 LIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 481 (527)
Q Consensus 447 ~~~~~~~~~~rC~~~~illEmDRILRP~G~~iird 481 (527)
+.. +...+|-|+-|+|+|||.++|.+
T Consensus 210 Hv~---------d~~~~L~~l~r~LkPGG~liist 235 (322)
T PLN02396 210 HVA---------NPAEFCKSLSALTIPNGATVLST 235 (322)
T ss_pred hcC---------CHHHHHHHHHHHcCCCcEEEEEE
Confidence 654 24679999999999999999985
No 104
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=97.07 E-value=0.00051 Score=68.52 Aligned_cols=108 Identities=18% Similarity=0.201 Sum_probs=65.4
Q ss_pred eeEeecCCCccchhhhccCCC---eeEEEecCCCCCCchhHhhh----ccccccccccCCCCCCCCCccchhhhcCcccc
Q 009719 375 RNIMDMNAFFGGFAAALTSDP---VWVMNVVPARKSSTLSVIYD----RGLIGVYHDWCEPFSTYPRTYDLIHVSGIESL 447 (527)
Q Consensus 375 RnvmDm~ag~GgFaAaL~~~~---VwvMnvvp~~~~ntl~vi~e----RGLiG~~hdwce~fstYPrtyDLiHa~~~fs~ 447 (527)
.+|||+|||.|..+.++.... |..+-+-| ..+..+-+ .|+-...+-.+. ..+||+|.|+-....
T Consensus 121 ~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~----~~l~~A~~n~~~~~~~~~~~~~~~-----~~~fD~Vvani~~~~ 191 (250)
T PRK00517 121 KTVLDVGCGSGILAIAAAKLGAKKVLAVDIDP----QAVEAARENAELNGVELNVYLPQG-----DLKADVIVANILANP 191 (250)
T ss_pred CEEEEeCCcHHHHHHHHHHcCCCeEEEEECCH----HHHHHHHHHHHHcCCCceEEEccC-----CCCcCEEEEcCcHHH
Confidence 579999999998887765543 33332222 23333322 233110110000 116999988533221
Q ss_pred ccCCCCCCCCCcccccceeecccccCCcEEEEeCCH-HHHHHHHHHHhcCCceeEEe
Q 009719 448 IKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP-EVIDKVSRIANTVRWTAAVH 503 (527)
Q Consensus 448 ~~~~~~~~~rC~~~~illEmDRILRP~G~~iird~~-~~~~~i~~i~~~l~W~~~~~ 503 (527)
+..++-++-|+|+|||++|+++-. +....+.+.++..-++....
T Consensus 192 ------------~~~l~~~~~~~LkpgG~lilsgi~~~~~~~v~~~l~~~Gf~~~~~ 236 (250)
T PRK00517 192 ------------LLELAPDLARLLKPGGRLILSGILEEQADEVLEAYEEAGFTLDEV 236 (250)
T ss_pred ------------HHHHHHHHHHhcCCCcEEEEEECcHhhHHHHHHHHHHCCCEEEEE
Confidence 245677999999999999999743 35667777788888876654
No 105
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=97.06 E-value=0.0011 Score=63.86 Aligned_cols=83 Identities=22% Similarity=0.211 Sum_probs=56.8
Q ss_pred hhccccccccCCeeEEeeccCcChHHHHHHHHHc----CC--CcEEeeccccCCCCCCCcccEEEecCcccccccCh-HH
Q 009719 143 VASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYN-AT 215 (527)
Q Consensus 143 vgsfga~Ll~r~V~~msiAp~D~seaqvq~A~eR----g~--pa~~~v~dae~LPFpD~SFDlV~cs~~l~hw~d~~-~~ 215 (527)
.|.++..|...+.. +...|.++.+++.|+++ +. ...+.+++ +++.+++||+|+|..+++|+++.. ..
T Consensus 74 ~G~~~~~l~~~~~~---v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d---~~~~~~~fD~v~~~~~l~~~~~~~~~~ 147 (230)
T PRK07580 74 VGSLSIPLARRGAK---VVASDISPQMVEEARERAPEAGLAGNITFEVGD---LESLLGRFDTVVCLDVLIHYPQEDAAR 147 (230)
T ss_pred CCHHHHHHHHcCCE---EEEEECCHHHHHHHHHHHHhcCCccCcEEEEcC---chhccCCcCEEEEcchhhcCCHHHHHH
Confidence 34445556666543 44558888999999875 22 23444444 667789999999999999987654 35
Q ss_pred HHHHHhhcccCCcEEE
Q 009719 216 YLIEVDRLLRPGGYLV 231 (527)
Q Consensus 216 aL~Ei~RVLRPGG~lv 231 (527)
+++++.+++++|+.+.
T Consensus 148 ~l~~l~~~~~~~~~i~ 163 (230)
T PRK07580 148 MLAHLASLTRGSLIFT 163 (230)
T ss_pred HHHHHHhhcCCeEEEE
Confidence 8899999876555443
No 106
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=97.05 E-value=0.0019 Score=62.61 Aligned_cols=65 Identities=22% Similarity=0.138 Sum_probs=47.9
Q ss_pred cChHHHHHHHHHc----CCC--cEEeeccccCCCCCCCcccEEEecCcccccccChHHHHHHHhhcccCCcEEEEecC
Q 009719 164 DSHKAQIQFALER----GIP--AFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 235 (527)
Q Consensus 164 D~seaqvq~A~eR----g~p--a~~~v~dae~LPFpD~SFDlV~cs~~l~hw~d~~~~aL~Ei~RVLRPGG~lviS~p 235 (527)
|.++++++.|+++ +.. +.+..+|....+..+++||+|++..++.|. ..|+.|+|||||+|++...
T Consensus 104 D~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~~~~-------~~~l~~~L~~gG~lvi~~~ 174 (205)
T PRK13944 104 EIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHAPFDAIIVTAAASTI-------PSALVRQLKDGGVLVIPVE 174 (205)
T ss_pred eCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCCCccEEEEccCcchh-------hHHHHHhcCcCcEEEEEEc
Confidence 6677788777653 443 456677876655567899999999876553 3588899999999998653
No 107
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=97.05 E-value=0.0019 Score=51.53 Aligned_cols=71 Identities=28% Similarity=0.313 Sum_probs=50.0
Q ss_pred CcChHHHHHHHHH---cC--CCcEEeeccccCCCC-CCCcccEEEecCcccccccChHHHHHHHhhcccCCcEEEEe
Q 009719 163 RDSHKAQIQFALE---RG--IPAFVAMLGTRRLPF-PAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVIS 233 (527)
Q Consensus 163 ~D~seaqvq~A~e---Rg--~pa~~~v~dae~LPF-pD~SFDlV~cs~~l~hw~d~~~~aL~Ei~RVLRPGG~lviS 233 (527)
.|.++.+++.+.+ .+ ....+...+....+. ..+.||+|++..++.++.......+..+.++|||||+++++
T Consensus 27 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 27 VDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHLVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred EeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 3666677776652 12 224455566555543 67889999999988663444445999999999999999986
No 108
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=97.05 E-value=0.0024 Score=67.33 Aligned_cols=120 Identities=14% Similarity=0.114 Sum_probs=73.9
Q ss_pred hhccccccccCCeeEEeeccCcChHHHHHHHHHc----CCCcEEeeccccCCCCCCCcccEEEecCcccccccC----hH
Q 009719 143 VASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAY----NA 214 (527)
Q Consensus 143 vgsfga~Ll~r~V~~msiAp~D~seaqvq~A~eR----g~pa~~~v~dae~LPFpD~SFDlV~cs~~l~hw~d~----~~ 214 (527)
.|.++..+..+.-. ..+...|.++.+++.|+++ ++...+...|. +...++.||+|+|+-.+|+..+. ..
T Consensus 207 ~G~ls~~la~~~p~-~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~--~~~~~~~fDlIvsNPPFH~g~~~~~~~~~ 283 (342)
T PRK09489 207 AGVLSAVLARHSPK-IRLTLSDVSAAALESSRATLAANGLEGEVFASNV--FSDIKGRFDMIISNPPFHDGIQTSLDAAQ 283 (342)
T ss_pred cCHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCEEEEccc--ccccCCCccEEEECCCccCCccccHHHHH
Confidence 34444455554321 1244447788888877643 45555554554 23346899999999776442221 23
Q ss_pred HHHHHHhhcccCCcEEEEecCCCCCCCchhHHHHHHHHHHhcceEEeeeecceEEEeC
Q 009719 215 TYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIAVDGNTVIWKK 272 (527)
Q Consensus 215 ~aL~Ei~RVLRPGG~lviS~pp~~~~~~~~~w~~i~~l~~~mcW~~~~~~~~v~iwrK 272 (527)
.++.++.|.|||||.|++.... ..+|..+ +++... ..+.+.+.+...||+-
T Consensus 284 ~~i~~a~~~LkpgG~L~iVan~---~l~y~~~--l~~~Fg--~~~~la~~~~f~v~~a 334 (342)
T PRK09489 284 TLIRGAVRHLNSGGELRIVANA---FLPYPDL--LDETFG--SHEVLAQTGRFKVYRA 334 (342)
T ss_pred HHHHHHHHhcCcCCEEEEEEeC---CCChHHH--HHHHcC--CeEEEEeCCCEEEEEE
Confidence 4899999999999999997641 2233332 222222 2578888888999974
No 109
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=97.04 E-value=0.0013 Score=64.94 Aligned_cols=83 Identities=14% Similarity=0.074 Sum_probs=59.5
Q ss_pred ccccccCCeeEEeeccCcChHHHHHHH-HHcCCC----------------cEEeeccccCCCCC-CCcccEEEecCcccc
Q 009719 147 GGSMLSENILTLSFAPRDSHKAQIQFA-LERGIP----------------AFVAMLGTRRLPFP-AFSFDIVHCSRCLIP 208 (527)
Q Consensus 147 ga~Ll~r~V~~msiAp~D~seaqvq~A-~eRg~p----------------a~~~v~dae~LPFp-D~SFDlV~cs~~l~h 208 (527)
+.+|.++|..++.+ |.++..++.| .++++. +.+.++|...++.. ...||+|.-+.+++|
T Consensus 52 a~~LA~~G~~V~av---D~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~~fd~v~D~~~~~~ 128 (218)
T PRK13255 52 MLWLAEQGHEVLGV---ELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLADVDAVYDRAALIA 128 (218)
T ss_pred HHHHHhCCCeEEEE---ccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccCCCeeEEEehHhHhh
Confidence 56777887655555 6677777755 455543 34567787777544 368999998888888
Q ss_pred cccCh-HHHHHHHhhcccCCcEEEE
Q 009719 209 FTAYN-ATYLIEVDRLLRPGGYLVI 232 (527)
Q Consensus 209 w~d~~-~~aL~Ei~RVLRPGG~lvi 232 (527)
++... ..++..+.++|||||++++
T Consensus 129 l~~~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 129 LPEEMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred CCHHHHHHHHHHHHHHcCCCCeEEE
Confidence 87554 3599999999999997444
No 110
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=97.02 E-value=0.0011 Score=71.28 Aligned_cols=71 Identities=23% Similarity=0.363 Sum_probs=51.2
Q ss_pred cChHHHHHHHH----HcCCC-cEEeeccccCC--CCCCCcccEEEecCcccccccCh------HHHHHHHhhcccCCcEE
Q 009719 164 DSHKAQIQFAL----ERGIP-AFVAMLGTRRL--PFPAFSFDIVHCSRCLIPFTAYN------ATYLIEVDRLLRPGGYL 230 (527)
Q Consensus 164 D~seaqvq~A~----eRg~p-a~~~v~dae~L--PFpD~SFDlV~cs~~l~hw~d~~------~~aL~Ei~RVLRPGG~l 230 (527)
|.+..++..|. ++++. +.+..+|+..+ +|++++||.|++... .+|+... ..+|.|+.|+|||||.+
T Consensus 153 EI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnFP-dPW~KkrHRRlv~~~fL~e~~RvLkpGG~l 231 (390)
T PRK14121 153 EIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHFP-VPWDKKPHRRVISEDFLNEALRVLKPGGTL 231 (390)
T ss_pred ECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeCC-CCccccchhhccHHHHHHHHHHHcCCCcEE
Confidence 44555555443 34554 45677888765 689999999998754 4675432 24899999999999999
Q ss_pred EEecC
Q 009719 231 VISGP 235 (527)
Q Consensus 231 viS~p 235 (527)
.+.+-
T Consensus 232 ~l~TD 236 (390)
T PRK14121 232 ELRTD 236 (390)
T ss_pred EEEEE
Confidence 99874
No 111
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=97.01 E-value=0.00015 Score=72.06 Aligned_cols=93 Identities=16% Similarity=0.192 Sum_probs=60.7
Q ss_pred eeEeecCCCccchhhhccCCCeeEEEecCCCCC-CchhHhhh----ccccc---ccc-ccCCCCC-CCCCccchhhhcCc
Q 009719 375 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYD----RGLIG---VYH-DWCEPFS-TYPRTYDLIHVSGI 444 (527)
Q Consensus 375 RnvmDm~ag~GgFaAaL~~~~VwvMnvvp~~~~-ntl~vi~e----RGLiG---~~h-dwce~fs-tYPrtyDLiHa~~~ 444 (527)
..|||+|||.|.++..|..... +|+-.|.. ..+..+-+ .|+.. +.+ |..+ +. ..+.+||+|.+..+
T Consensus 46 ~~vLDiGcG~G~~a~~la~~g~---~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~-l~~~~~~~fD~V~~~~v 121 (255)
T PRK11036 46 LRVLDAGGGEGQTAIKLAELGH---QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQD-IAQHLETPVDLILFHAV 121 (255)
T ss_pred CEEEEeCCCchHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHH-HhhhcCCCCCEEEehhH
Confidence 5899999999999999987753 33333332 44444333 34422 111 1111 22 23589999999988
Q ss_pred cccccCCCCCCCCCcccccceeecccccCCcEEEEe
Q 009719 445 ESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 480 (527)
Q Consensus 445 fs~~~~~~~~~~rC~~~~illEmDRILRP~G~~iir 480 (527)
+.... +...+|-|+-|+|+|||.+++-
T Consensus 122 l~~~~---------~~~~~l~~~~~~LkpgG~l~i~ 148 (255)
T PRK11036 122 LEWVA---------DPKSVLQTLWSVLRPGGALSLM 148 (255)
T ss_pred HHhhC---------CHHHHHHHHHHHcCCCeEEEEE
Confidence 87543 1257899999999999999875
No 112
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=96.97 E-value=0.0018 Score=64.73 Aligned_cols=90 Identities=19% Similarity=0.158 Sum_probs=53.5
Q ss_pred eccCcChHHHHHHHHHcCCCcEEeeccccCCCCCCCcccEEEecCcccccccChHHHHHHHhhcccCCcEEEEecCCCCC
Q 009719 160 FAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPVQW 239 (527)
Q Consensus 160 iAp~D~seaqvq~A~eRg~pa~~~v~dae~LPFpD~SFDlV~cs~~l~hw~d~~~~aL~Ei~RVLRPGG~lviS~pp~~~ 239 (527)
+...|.++.+++.|+++.....+ .+...++..+.+||+|+|+... + ....++.++.|+|||||++++++.-..
T Consensus 145 v~giDis~~~l~~A~~n~~~~~~--~~~~~~~~~~~~fD~Vvani~~-~---~~~~l~~~~~~~LkpgG~lilsgi~~~- 217 (250)
T PRK00517 145 VLAVDIDPQAVEAARENAELNGV--ELNVYLPQGDLKADVIVANILA-N---PLLELAPDLARLLKPGGRLILSGILEE- 217 (250)
T ss_pred EEEEECCHHHHHHHHHHHHHcCC--CceEEEccCCCCcCEEEEcCcH-H---HHHHHHHHHHHhcCCCcEEEEEECcHh-
Confidence 33447788899888765211101 0111233334489999987543 2 122488999999999999999975211
Q ss_pred CCchhHHHHHHHHHHhcceEEe
Q 009719 240 PKQDKEWADLQAVARALCYELI 261 (527)
Q Consensus 240 ~~~~~~w~~i~~l~~~mcW~~~ 261 (527)
..+.+.+..+..-++..
T Consensus 218 -----~~~~v~~~l~~~Gf~~~ 234 (250)
T PRK00517 218 -----QADEVLEAYEEAGFTLD 234 (250)
T ss_pred -----hHHHHHHHHHHCCCEEE
Confidence 12344444555555544
No 113
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=96.95 E-value=0.00045 Score=67.37 Aligned_cols=123 Identities=20% Similarity=0.282 Sum_probs=69.8
Q ss_pred eeEeecCCCccchhhhccCC-CeeEEEecCCCCC-CchhHh----hhccc--ccccc-ccCCCCCCCCCccchhhhcCcc
Q 009719 375 RNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVI----YDRGL--IGVYH-DWCEPFSTYPRTYDLIHVSGIE 445 (527)
Q Consensus 375 RnvmDm~ag~GgFaAaL~~~-~VwvMnvvp~~~~-ntl~vi----~eRGL--iG~~h-dwce~fstYPrtyDLiHa~~~f 445 (527)
.+|+|+|||.|.|+.++... +-. +++-.+.. ..+..+ -..|+ +-+++ |+-+.+. ...||+|-++--|
T Consensus 89 ~~ilDig~G~G~~~~~l~~~~~~~--~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~--~~~fD~Vi~npPy 164 (251)
T TIGR03534 89 LRVLDLGTGSGAIALALAKERPDA--RVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLP--GGKFDLIVSNPPY 164 (251)
T ss_pred CeEEEEeCcHhHHHHHHHHHCCCC--EEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCc--CCceeEEEECCCC
Confidence 47999999999999988764 211 22222221 222222 22343 11222 3222221 3789999886555
Q ss_pred ccccCCCCCCCCCc-----------------ccccceeecccccCCcEEEEeCCHHHHHHHHHHHhcCCceeE
Q 009719 446 SLIKNPGSNKNSCS-----------------LVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRIANTVRWTAA 501 (527)
Q Consensus 446 s~~~~~~~~~~rC~-----------------~~~illEmDRILRP~G~~iird~~~~~~~i~~i~~~l~W~~~ 501 (527)
....++........ ...++-++-|+|+|||.+++........++++++++..++..
T Consensus 165 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~~~~~~~~~~l~~~gf~~v 237 (251)
T TIGR03534 165 IPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGYDQGEAVRALFEAAGFADV 237 (251)
T ss_pred CchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECccHHHHHHHHHHhCCCCce
Confidence 43211000000000 124667889999999999998766566778888887777643
No 114
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=96.95 E-value=0.0015 Score=68.01 Aligned_cols=90 Identities=24% Similarity=0.275 Sum_probs=67.5
Q ss_pred hhccccc----cccCCee-EEeeccCcChHHHHHHHHHc-CCCc-EEe-eccccCCCCCCCcccEEEecCcccccccChH
Q 009719 143 VASFGGS----MLSENIL-TLSFAPRDSHKAQIQFALER-GIPA-FVA-MLGTRRLPFPAFSFDIVHCSRCLIPFTAYNA 214 (527)
Q Consensus 143 vgsfga~----Ll~r~V~-~msiAp~D~seaqvq~A~eR-g~pa-~~~-v~dae~LPFpD~SFDlV~cs~~l~hw~d~~~ 214 (527)
+|+..|| |+.+|+. ++.|.|....-.|-+++++- |... .+. -.+.+.||. .++||+|.|.-+|-|-.++-.
T Consensus 122 IGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~FDtVF~MGVLYHrr~Pl~ 200 (315)
T PF08003_consen 122 IGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-LGAFDTVFSMGVLYHRRSPLD 200 (315)
T ss_pred ecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-cCCcCEEEEeeehhccCCHHH
Confidence 5665554 4667774 78888877666666665543 2222 222 257899999 899999999999999887776
Q ss_pred HHHHHHhhcccCCcEEEEec
Q 009719 215 TYLIEVDRLLRPGGYLVISG 234 (527)
Q Consensus 215 ~aL~Ei~RVLRPGG~lviS~ 234 (527)
.|.++...|||||.|++-+
T Consensus 201 -~L~~Lk~~L~~gGeLvLET 219 (315)
T PF08003_consen 201 -HLKQLKDSLRPGGELVLET 219 (315)
T ss_pred -HHHHHHHhhCCCCEEEEEE
Confidence 9999999999999999744
No 115
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=96.95 E-value=0.00085 Score=63.75 Aligned_cols=132 Identities=14% Similarity=0.195 Sum_probs=69.0
Q ss_pred eeEeecCCCccchhhhccCC-----CeeEEEecCCCCCCchhHhhhccccccccccCCCC------CCC-CCccchhhhc
Q 009719 375 RNIMDMNAFFGGFAAALTSD-----PVWVMNVVPARKSSTLSVIYDRGLIGVYHDWCEPF------STY-PRTYDLIHVS 442 (527)
Q Consensus 375 RnvmDm~ag~GgFaAaL~~~-----~VwvMnvvp~~~~ntl~vi~eRGLiG~~hdwce~f------stY-PrtyDLiHa~ 442 (527)
.+|||+|||.|+++.++..+ .|+..=+-|... + .|+--+..|..+.. ..+ +.+||+|=++
T Consensus 34 ~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~~-------~-~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~ 105 (188)
T TIGR00438 34 DTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMKP-------I-ENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSD 105 (188)
T ss_pred CEEEEecCCCCHHHHHHHHHhCCCceEEEEecccccc-------C-CCceEEEeeCCChhHHHHHHHHhCCCCccEEEcC
Confidence 48999999999997766332 255543333210 0 12221223443321 012 3578887765
Q ss_pred Ccc--c-cccCCCCCCCCCcccccceeecccccCCcEEEEeC-C----HHHHHHHHHHHhcCCceeEEe-cCCCCCCCCc
Q 009719 443 GIE--S-LIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD-S----PEVIDKVSRIANTVRWTAAVH-DKEPGSNGRE 513 (527)
Q Consensus 443 ~~f--s-~~~~~~~~~~rC~~~~illEmDRILRP~G~~iird-~----~~~~~~i~~i~~~l~W~~~~~-~~e~~~~~~e 513 (527)
... + .|. .......+.++.+|-++-|+|+|||.+++-. . .+++.++++ . -|.+.+. |.-......|
T Consensus 106 ~~~~~~g~~~-~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~~~~~l~~l~~---~-~~~~~~~~~~~~~~~~~~ 180 (188)
T TIGR00438 106 AAPNISGYWD-IDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGEEIDEYLNELRK---L-FEKVKVTKPQASRKRSAE 180 (188)
T ss_pred CCCCCCCCcc-ccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCccHHHHHHHHHh---h-hceEEEeCCCCCCcccce
Confidence 321 1 110 0000001224678899999999999999942 2 233433333 2 2545443 3333444578
Q ss_pred eEEEEE
Q 009719 514 KILVAT 519 (527)
Q Consensus 514 kiLi~~ 519 (527)
+.+||.
T Consensus 181 ~~~~~~ 186 (188)
T TIGR00438 181 VYIVAK 186 (188)
T ss_pred EEEEEe
Confidence 888885
No 116
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=96.95 E-value=0.0046 Score=62.04 Aligned_cols=173 Identities=16% Similarity=0.139 Sum_probs=113.2
Q ss_pred eeccCcChHHHHHHHHHcCCCcEEeeccccCCCCCCCcccEEEecCcccccccChHHHHHHHhhcccCCcEEEEecCCCC
Q 009719 159 SFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPVQ 238 (527)
Q Consensus 159 siAp~D~seaqvq~A~eRg~pa~~~v~dae~LPFpD~SFDlV~cs~~l~hw~d~~~~aL~Ei~RVLRPGG~lviS~pp~~ 238 (527)
.|...|.|.+|+..|++|...+.|..+|.... =|+..+|++.++-++ ||-.+-..+|.-+.--|.|||.|.+--| -|
T Consensus 56 ~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w-~p~~~~dllfaNAvl-qWlpdH~~ll~rL~~~L~Pgg~LAVQmP-dN 132 (257)
T COG4106 56 VITGIDSSPAMLAKAAQRLPDATFEEADLRTW-KPEQPTDLLFANAVL-QWLPDHPELLPRLVSQLAPGGVLAVQMP-DN 132 (257)
T ss_pred eEeeccCCHHHHHHHHHhCCCCceecccHhhc-CCCCccchhhhhhhh-hhccccHHHHHHHHHhhCCCceEEEECC-Cc
Confidence 35566999999999999998899988887554 256889999999887 6654444499999999999999999887 23
Q ss_pred CCCchhHHHHHHHHHHhcceEEeeeecceEEEeCCCcc-ccccccCCCCCCCCCCCCCCCcccccccccccccccCCC--
Q 009719 239 WPKQDKEWADLQAVARALCYELIAVDGNTVIWKKPVGE-SCLSNQNEFGLELCDESDDPNYAWYFKLKKCVSGTSSVK-- 315 (527)
Q Consensus 239 ~~~~~~~w~~i~~l~~~mcW~~~~~~~~v~iwrKp~~~-~c~~~~~~~~p~~C~~~~d~d~~wy~~~~~Ci~~~~~~~-- 315 (527)
+... .-..|+++++..-|...-. +..+.++++-. ..|-.. -.|--|+- +.|-+.- .++++...
T Consensus 133 ~dep--sH~~mr~~A~~~p~~~~l~--~~~~~r~~v~s~a~Yy~l--La~~~~rv-----DiW~T~Y---~h~l~~a~aI 198 (257)
T COG4106 133 LDEP--SHRLMRETADEAPFAQELG--GRGLTRAPLPSPAAYYEL--LAPLACRV-----DIWHTTY---YHQLPGADAI 198 (257)
T ss_pred cCch--hHHHHHHHHhcCchhhhhC--ccccccCCCCCHHHHHHH--hCccccee-----eeeeeec---cccCCCccch
Confidence 2211 1235888888877755443 33346888864 333321 11224542 2353322 22333322
Q ss_pred -ccccCCCCCCCCccccCCCccccccccCccccchhhHHHHHHHHHHHHHhhh
Q 009719 316 -GEYAVGTIPKWPQRLTKAPSRALVMKNGYDVFEADSRRWRRRVAYYKNTLNV 367 (527)
Q Consensus 316 -~~~~~~~~~~wP~Rl~~~p~rl~~~g~~~~~f~~d~~~W~~~v~~Y~~~l~~ 367 (527)
+++.+..+.||=+|| |.+.|+.-.+.|...|..
T Consensus 199 vdWvkgTgLrP~L~~L-------------------~e~~~~~FL~~Y~~~l~~ 232 (257)
T COG4106 199 VDWVKGTGLRPYLDRL-------------------DEEERQRFLDRYLALLAE 232 (257)
T ss_pred hhheeccccceecccc-------------------CHHHHHHHHHHHHHHHHH
Confidence 355666666555554 456788888889987764
No 117
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=96.93 E-value=0.0017 Score=67.82 Aligned_cols=86 Identities=20% Similarity=0.206 Sum_probs=54.8
Q ss_pred hhccccccccCCeeEEeeccCcChHHHHHHHHHcCC----------CcEEeeccccCCCCCCCcccEEEecCcccccccC
Q 009719 143 VASFGGSMLSENILTLSFAPRDSHKAQIQFALERGI----------PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAY 212 (527)
Q Consensus 143 vgsfga~Ll~r~V~~msiAp~D~seaqvq~A~eRg~----------pa~~~v~dae~LPFpD~SFDlV~cs~~l~hw~d~ 212 (527)
+|.++.+|..++..+ ...|.++.|++.|+++.. ...+.++|.+.+ +++||+|+|..+++|+++.
T Consensus 155 tG~~a~~la~~g~~V---~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l---~~~fD~Vv~~~vL~H~p~~ 228 (315)
T PLN02585 155 TGSLAIPLALEGAIV---SASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL---SGKYDTVTCLDVLIHYPQD 228 (315)
T ss_pred CCHHHHHHHHCCCEE---EEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc---CCCcCEEEEcCEEEecCHH
Confidence 455556666666543 334888999999987631 233444554433 6899999999999998875
Q ss_pred hH-HHHHHHhhcccCCcEEEEecCC
Q 009719 213 NA-TYLIEVDRLLRPGGYLVISGPP 236 (527)
Q Consensus 213 ~~-~aL~Ei~RVLRPGG~lviS~pp 236 (527)
.. ..+..+.+ +.+||. +++..|
T Consensus 229 ~~~~ll~~l~~-l~~g~l-iIs~~p 251 (315)
T PLN02585 229 KADGMIAHLAS-LAEKRL-IISFAP 251 (315)
T ss_pred HHHHHHHHHHh-hcCCEE-EEEeCC
Confidence 43 25555555 455555 445433
No 118
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=96.92 E-value=0.00071 Score=66.15 Aligned_cols=55 Identities=15% Similarity=0.031 Sum_probs=41.7
Q ss_pred cEEeeccccCCC--------CCCCcccEEEecCcccccccCh-----------HHHHHHHhhcccCCcEEEEecC
Q 009719 180 AFVAMLGTRRLP--------FPAFSFDIVHCSRCLIPFTAYN-----------ATYLIEVDRLLRPGGYLVISGP 235 (527)
Q Consensus 180 a~~~v~dae~LP--------FpD~SFDlV~cs~~l~hw~d~~-----------~~aL~Ei~RVLRPGG~lviS~p 235 (527)
+.+.++|....+ +++++||+|+|+.+. ||.... ..+|.|+.|+|||||.|++...
T Consensus 93 v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~~~~-~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~ 166 (209)
T PRK11188 93 VDFLQGDFRDELVLKALLERVGDSKVQVVMSDMAP-NMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVF 166 (209)
T ss_pred cEEEecCCCChHHHHHHHHHhCCCCCCEEecCCCC-ccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 456677877753 788999999998764 443321 2389999999999999999653
No 119
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=96.91 E-value=0.00071 Score=72.01 Aligned_cols=52 Identities=21% Similarity=0.403 Sum_probs=46.8
Q ss_pred EEeeccccCCCCCCCcccEEEecCcccccccChHHHHHHHhhcccCCcEEEEe
Q 009719 181 FVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVIS 233 (527)
Q Consensus 181 ~~~v~dae~LPFpD~SFDlV~cs~~l~hw~d~~~~aL~Ei~RVLRPGG~lviS 233 (527)
.+...+....||+|++||.|-+..+..|-++..+ ++.|+.|||+|||+++..
T Consensus 163 ~~~~~~~~~~~fedn~fd~v~~ld~~~~~~~~~~-~y~Ei~rv~kpGG~~i~~ 214 (364)
T KOG1269|consen 163 NFVVADFGKMPFEDNTFDGVRFLEVVCHAPDLEK-VYAEIYRVLKPGGLFIVK 214 (364)
T ss_pred ceehhhhhcCCCCccccCcEEEEeecccCCcHHH-HHHHHhcccCCCceEEeH
Confidence 3466788899999999999999999999888777 999999999999999974
No 120
>PRK14968 putative methyltransferase; Provisional
Probab=96.91 E-value=0.0075 Score=56.01 Aligned_cols=89 Identities=19% Similarity=0.208 Sum_probs=55.7
Q ss_pred hhccccccccCCeeEEeeccCcChHHHHHHHHHc----CCC---cEEeeccccCCCCCCCcccEEEecCccccccc----
Q 009719 143 VASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIP---AFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTA---- 211 (527)
Q Consensus 143 vgsfga~Ll~r~V~~msiAp~D~seaqvq~A~eR----g~p---a~~~v~dae~LPFpD~SFDlV~cs~~l~hw~d---- 211 (527)
.|.++..|..++.. +...|.++.+++.|+++ +.. +.+...|... ++++++||+|+++.-..+...
T Consensus 34 ~G~~~~~l~~~~~~---v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~d~vi~n~p~~~~~~~~~~ 109 (188)
T PRK14968 34 SGIVAIVAAKNGKK---VVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFE-PFRGDKFDVILFNPPYLPTEEEEEW 109 (188)
T ss_pred cCHHHHHHHhhcce---EEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccc-cccccCceEEEECCCcCCCCchhhh
Confidence 34445555555433 33347778888877543 332 4455566433 566779999998754332110
Q ss_pred ----------------ChHHHHHHHhhcccCCcEEEEecC
Q 009719 212 ----------------YNATYLIEVDRLLRPGGYLVISGP 235 (527)
Q Consensus 212 ----------------~~~~aL~Ei~RVLRPGG~lviS~p 235 (527)
....++.++.|+|||||.+++..+
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~ 149 (188)
T PRK14968 110 DDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQS 149 (188)
T ss_pred hhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEc
Confidence 012379999999999999988765
No 121
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=96.90 E-value=0.0018 Score=68.47 Aligned_cols=89 Identities=21% Similarity=0.358 Sum_probs=65.0
Q ss_pred ccccccCCeeEEeeccCcChHHHHHHHHHc----CCCcE--EeeccccCCCCCCCcccEEEecC--cc---ccccc---C
Q 009719 147 GGSMLSENILTLSFAPRDSHKAQIQFALER----GIPAF--VAMLGTRRLPFPAFSFDIVHCSR--CL---IPFTA---Y 212 (527)
Q Consensus 147 ga~Ll~r~V~~msiAp~D~seaqvq~A~eR----g~pa~--~~v~dae~LPFpD~SFDlV~cs~--~l---~hw~d---~ 212 (527)
|+-|.+.+..+...-..|+.++|++-|+.. ++.-. +.+.|+..|||++++||+|.|.- .. ..-.. -
T Consensus 209 GgiLiEagl~G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaIatDPPYGrst~~~~~~l~~L 288 (347)
T COG1041 209 GGILIEAGLMGARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAIATDPPYGRSTKIKGEGLDEL 288 (347)
T ss_pred cHHHHhhhhcCceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccceEEecCCCCcccccccccHHHH
Confidence 556777777777777779999999988754 33322 34459999999999999999861 10 11111 1
Q ss_pred hHHHHHHHhhcccCCcEEEEecC
Q 009719 213 NATYLIEVDRLLRPGGYLVISGP 235 (527)
Q Consensus 213 ~~~aL~Ei~RVLRPGG~lviS~p 235 (527)
-..+|.++.+|||+||++++.+|
T Consensus 289 y~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 289 YEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred HHHHHHHHHHHhhcCcEEEEecC
Confidence 12489999999999999999998
No 122
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=96.90 E-value=0.0011 Score=68.13 Aligned_cols=89 Identities=17% Similarity=0.154 Sum_probs=55.9
Q ss_pred ccccccCCeeEEeeccCcChHHHHHHHHHcC------CCcEEeeccccC-CCCCCCc----ccEEEecCcccccccCh-H
Q 009719 147 GGSMLSENILTLSFAPRDSHKAQIQFALERG------IPAFVAMLGTRR-LPFPAFS----FDIVHCSRCLIPFTAYN-A 214 (527)
Q Consensus 147 ga~Ll~r~V~~msiAp~D~seaqvq~A~eRg------~pa~~~v~dae~-LPFpD~S----FDlV~cs~~l~hw~d~~-~ 214 (527)
+..|++.......+.+.|.|++|++.|.++- +.+....+|... ++++... ..++++...+.|+...+ .
T Consensus 78 t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~~e~~ 157 (301)
T TIGR03438 78 TRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGFFPGSTIGNFTPEEAV 157 (301)
T ss_pred HHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEEEecccccCCCHHHHH
Confidence 3345555321234555589999999987651 233445677554 5565443 33444445666665433 3
Q ss_pred HHHHHHhhcccCCcEEEEecC
Q 009719 215 TYLIEVDRLLRPGGYLVISGP 235 (527)
Q Consensus 215 ~aL~Ei~RVLRPGG~lviS~p 235 (527)
.+|+++.++|+|||.|++...
T Consensus 158 ~~L~~i~~~L~pgG~~lig~d 178 (301)
T TIGR03438 158 AFLRRIRQLLGPGGGLLIGVD 178 (301)
T ss_pred HHHHHHHHhcCCCCEEEEecc
Confidence 599999999999999999764
No 123
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=96.88 E-value=0.0006 Score=69.01 Aligned_cols=133 Identities=14% Similarity=0.104 Sum_probs=81.1
Q ss_pred cCccccchhhHHHHHHHHHHHHHhhhccCCCCeeeEeecCCCccc----hhhhccCC----CeeEEEecCCCCC-CchhH
Q 009719 342 NGYDVFEADSRRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGG----FAAALTSD----PVWVMNVVPARKS-STLSV 412 (527)
Q Consensus 342 ~~~~~f~~d~~~W~~~v~~Y~~~l~~~i~~~~iRnvmDm~ag~Gg----FaAaL~~~----~VwvMnvvp~~~~-ntl~v 412 (527)
++...|-.|..+|..-.+.....+......+.--.|+|.|||+|- .|-.|.+. .-|...|+-+|-. .-|..
T Consensus 68 i~~T~FfR~~~~~~~l~~~vlp~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~ 147 (264)
T smart00138 68 TNETRFFRESKHFEALEEKVLPLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEK 147 (264)
T ss_pred cCCCcccCCcHHHHHHHHHHhHHHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHH
Confidence 445568889999998776655433222222333579999999994 55544331 1234455555543 33332
Q ss_pred hhhccc---------c--------------------------ccccccCCCCCCC-CCccchhhhcCccccccCCCCCCC
Q 009719 413 IYDRGL---------I--------------------------GVYHDWCEPFSTY-PRTYDLIHVSGIESLIKNPGSNKN 456 (527)
Q Consensus 413 i~eRGL---------i--------------------------G~~hdwce~fstY-PrtyDLiHa~~~fs~~~~~~~~~~ 456 (527)
+- +|+ . =..||-.+. .+ +..||+|.|..+|..+.
T Consensus 148 Ar-~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~--~~~~~~fD~I~crnvl~yf~------- 217 (264)
T smart00138 148 AR-AGIYPERELEDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLAE--SPPLGDFDLIFCRNVLIYFD------- 217 (264)
T ss_pred HH-cCCCCHHHHhcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCCC--CCccCCCCEEEechhHHhCC-------
Confidence 22 221 0 012343432 13 37899999998887653
Q ss_pred CCcccccceeecccccCCcEEEEeCCHH
Q 009719 457 SCSLVDLMVEMDRMLRPEGTVVVRDSPE 484 (527)
Q Consensus 457 rC~~~~illEmDRILRP~G~~iird~~~ 484 (527)
.=....++-++-|+|+|||++++-....
T Consensus 218 ~~~~~~~l~~l~~~L~pGG~L~lg~~E~ 245 (264)
T smart00138 218 EPTQRKLLNRFAEALKPGGYLFLGHSES 245 (264)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEECccc
Confidence 1112469999999999999999976543
No 124
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=96.80 E-value=0.0035 Score=62.28 Aligned_cols=140 Identities=19% Similarity=0.324 Sum_probs=74.0
Q ss_pred eeEeecCCCccchhhhccCCC-eeEEEecCCCCC-CchhHhhhc---cc---cc-cccccCCCCCCCCCccchhhhcCcc
Q 009719 375 RNIMDMNAFFGGFAAALTSDP-VWVMNVVPARKS-STLSVIYDR---GL---IG-VYHDWCEPFSTYPRTYDLIHVSGIE 445 (527)
Q Consensus 375 RnvmDm~ag~GgFaAaL~~~~-VwvMnvvp~~~~-ntl~vi~eR---GL---iG-~~hdwce~fstYPrtyDLiHa~~~f 445 (527)
.+|+|+|||.|.++.+|...- -+ .|+-.|.. ..+..+-++ ++ +- +..|+-+++. +.+||+|-++--+
T Consensus 110 ~~vLDiG~GsG~~~~~la~~~~~~--~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~--~~~fD~Iv~npPy 185 (275)
T PRK09328 110 LRVLDLGTGSGAIALALAKERPDA--EVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLP--GGRFDLIVSNPPY 185 (275)
T ss_pred CEEEEEcCcHHHHHHHHHHHCCCC--EEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCC--CCceeEEEECCCc
Confidence 469999999999998885432 11 22222222 333333322 22 11 1224433332 3789999875433
Q ss_pred ccccC-----CC-----------CCCCCCc-ccccceeecccccCCcEEEEeCCHHHHHHHHHHHhcCCceeEEecCCCC
Q 009719 446 SLIKN-----PG-----------SNKNSCS-LVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRIANTVRWTAAVHDKEPG 508 (527)
Q Consensus 446 s~~~~-----~~-----------~~~~rC~-~~~illEmDRILRP~G~~iird~~~~~~~i~~i~~~l~W~~~~~~~e~~ 508 (527)
..... +. .+.+... +..++-++-++|+|||++++.-....-..+++++++..+.....-. .
T Consensus 186 ~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~~~~~~~~~~l~~~gf~~v~~~~--d 263 (275)
T PRK09328 186 IPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGYDQGEAVRALLAAAGFADVETRK--D 263 (275)
T ss_pred CCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECchHHHHHHHHHHhCCCceeEEec--C
Confidence 21100 00 0000000 1345667779999999999974444445677777665564222211 2
Q ss_pred CCCCceEEEEEe
Q 009719 509 SNGREKILVATK 520 (527)
Q Consensus 509 ~~~~ekiLi~~K 520 (527)
-.+.+++++++|
T Consensus 264 ~~~~~r~~~~~~ 275 (275)
T PRK09328 264 LAGRDRVVLGRR 275 (275)
T ss_pred CCCCceEEEEEC
Confidence 225688888865
No 125
>PRK14967 putative methyltransferase; Provisional
Probab=96.80 E-value=0.0038 Score=61.08 Aligned_cols=74 Identities=20% Similarity=0.192 Sum_probs=48.1
Q ss_pred ccCcChHHHHHHHHHc----CCCcEEeeccccCCCCCCCcccEEEecCcccccccC--------------------hHHH
Q 009719 161 APRDSHKAQIQFALER----GIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAY--------------------NATY 216 (527)
Q Consensus 161 Ap~D~seaqvq~A~eR----g~pa~~~v~dae~LPFpD~SFDlV~cs~~l~hw~d~--------------------~~~a 216 (527)
...|.++.+++.|+++ +....+..+|... ++++++||+|+|.--.++-... ...+
T Consensus 63 ~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (223)
T PRK14967 63 TAVDISRRAVRSARLNALLAGVDVDVRRGDWAR-AVEFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRL 141 (223)
T ss_pred EEEECCHHHHHHHHHHHHHhCCeeEEEECchhh-hccCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHH
Confidence 3346677778776653 4445556666544 4678899999997322111000 1236
Q ss_pred HHHHhhcccCCcEEEEecC
Q 009719 217 LIEVDRLLRPGGYLVISGP 235 (527)
Q Consensus 217 L~Ei~RVLRPGG~lviS~p 235 (527)
+.++.|+|||||++++..+
T Consensus 142 l~~a~~~Lk~gG~l~~~~~ 160 (223)
T PRK14967 142 CDAAPALLAPGGSLLLVQS 160 (223)
T ss_pred HHHHHHhcCCCcEEEEEEe
Confidence 7889999999999998655
No 126
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=96.79 E-value=0.00083 Score=63.82 Aligned_cols=94 Identities=18% Similarity=0.229 Sum_probs=56.8
Q ss_pred eeeEeecCCCccchhhhccCC-----CeeEEEecCCCCCCchhHhhhcc-----ccccccccCCCCCCCCCccchhhhcC
Q 009719 374 IRNIMDMNAFFGGFAAALTSD-----PVWVMNVVPARKSSTLSVIYDRG-----LIGVYHDWCEPFSTYPRTYDLIHVSG 443 (527)
Q Consensus 374 iRnvmDm~ag~GgFaAaL~~~-----~VwvMnvvp~~~~ntl~vi~eRG-----LiG~~hdwce~fstYPrtyDLiHa~~ 443 (527)
=.+|+|+|||.|.++.++... .+..+.+. +..+..+-++. +--+..|-.+ ++.-+.+||+|++..
T Consensus 40 ~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~----~~~~~~~~~~~~~~~~i~~~~~d~~~-~~~~~~~~D~i~~~~ 114 (223)
T TIGR01934 40 GQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFS----SEMLEVAKKKSELPLNIEFIQADAEA-LPFEDNSFDAVTIAF 114 (223)
T ss_pred CCeEEEeCCCCChhHHHHHHhcCCCceEEEEECC----HHHHHHHHHHhccCCCceEEecchhc-CCCCCCcEEEEEEee
Confidence 458999999999998887433 22222221 13333333332 1111122211 121136899999876
Q ss_pred ccccccCCCCCCCCCcccccceeecccccCCcEEEEeC
Q 009719 444 IESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 481 (527)
Q Consensus 444 ~fs~~~~~~~~~~rC~~~~illEmDRILRP~G~~iird 481 (527)
.+... .+...++-++-++|+|||++++.+
T Consensus 115 ~~~~~---------~~~~~~l~~~~~~L~~gG~l~~~~ 143 (223)
T TIGR01934 115 GLRNV---------TDIQKALREMYRVLKPGGRLVILE 143 (223)
T ss_pred eeCCc---------ccHHHHHHHHHHHcCCCcEEEEEE
Confidence 66432 245678899999999999999864
No 127
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=96.77 E-value=0.0023 Score=62.58 Aligned_cols=64 Identities=14% Similarity=0.001 Sum_probs=47.3
Q ss_pred cChHHHHHHHHHc----CCC-cEEeeccccCCCCCCCcccEEEecCcccccccChHHHHHHHhhcccCCcEEEEec
Q 009719 164 DSHKAQIQFALER----GIP-AFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISG 234 (527)
Q Consensus 164 D~seaqvq~A~eR----g~p-a~~~v~dae~LPFpD~SFDlV~cs~~l~hw~d~~~~aL~Ei~RVLRPGG~lviS~ 234 (527)
|.++.+++.|+++ |.. +.+..+|+...+++++.||+|++.....+ ...++.+.|||||+|++-.
T Consensus 108 E~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~~fD~I~~~~~~~~-------~~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 108 ERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENAPYDRIYVTAAGPD-------IPKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred eCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcCCCcCEEEECCCccc-------chHHHHHhhCCCcEEEEEE
Confidence 5677888888764 443 56777887777777899999998876543 2346677999999999854
No 128
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.75 E-value=0.00041 Score=69.88 Aligned_cols=89 Identities=18% Similarity=0.208 Sum_probs=70.0
Q ss_pred hhccccccccCCeeEEeeccCcChHHHHHHHHHcCCCcEEeeccccC-CC-CCCCcccEEEecCcccccccChHHHHHHH
Q 009719 143 VASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRR-LP-FPAFSFDIVHCSRCLIPFTAYNATYLIEV 220 (527)
Q Consensus 143 vgsfga~Ll~r~V~~msiAp~D~seaqvq~A~eRg~pa~~~v~dae~-LP-FpD~SFDlV~cs~~l~hw~d~~~~aL~Ei 220 (527)
+|-.|..|.++-- .++..|+|++|++.|.|+|+--.+.++++.. |+ ..+.-||+|++..++....+-+. ++.-+
T Consensus 136 TGL~G~~lR~~a~---~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~AaDVl~YlG~Le~-~~~~a 211 (287)
T COG4976 136 TGLTGEALRDMAD---RLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIVAADVLPYLGALEG-LFAGA 211 (287)
T ss_pred cCcccHhHHHHHh---hccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccchhhhhHHHhhcchhh-HHHHH
Confidence 4444445544422 4566699999999999999877777777653 44 56789999999999988777766 99999
Q ss_pred hhcccCCcEEEEecC
Q 009719 221 DRLLRPGGYLVISGP 235 (527)
Q Consensus 221 ~RVLRPGG~lviS~p 235 (527)
.+.|.|||.|.+|.-
T Consensus 212 a~~L~~gGlfaFSvE 226 (287)
T COG4976 212 AGLLAPGGLFAFSVE 226 (287)
T ss_pred HHhcCCCceEEEEec
Confidence 999999999999975
No 129
>PRK04266 fibrillarin; Provisional
Probab=96.74 E-value=0.0063 Score=60.58 Aligned_cols=76 Identities=14% Similarity=0.194 Sum_probs=45.8
Q ss_pred cChHHHHHHHHHcC---CCcEEeeccccC----CCCCCCcccEEEecCcccccccChHHHHHHHhhcccCCcEEEEecCC
Q 009719 164 DSHKAQIQFALERG---IPAFVAMLGTRR----LPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPP 236 (527)
Q Consensus 164 D~seaqvq~A~eRg---~pa~~~v~dae~----LPFpD~SFDlV~cs~~l~hw~d~~~~aL~Ei~RVLRPGG~lviS~pp 236 (527)
|.++.|++.+.++. ..+.+..+|+.. .+++ ++||+|.+.... + +....+|.|+.|+|||||+|+++.+.
T Consensus 103 D~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~-~~~D~i~~d~~~-p--~~~~~~L~~~~r~LKpGG~lvI~v~~ 178 (226)
T PRK04266 103 EFAPRPMRELLEVAEERKNIIPILADARKPERYAHVV-EKVDVIYQDVAQ-P--NQAEIAIDNAEFFLKDGGYLLLAIKA 178 (226)
T ss_pred ECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhcc-ccCCEEEECCCC-h--hHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 66777776443321 224455566543 2233 569999865321 1 12234789999999999999997552
Q ss_pred --CCCCCch
Q 009719 237 --VQWPKQD 243 (527)
Q Consensus 237 --~~~~~~~ 243 (527)
++|....
T Consensus 179 ~~~d~~~~~ 187 (226)
T PRK04266 179 RSIDVTKDP 187 (226)
T ss_pred ccccCcCCH
Confidence 4554433
No 130
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=96.74 E-value=0.01 Score=63.60 Aligned_cols=130 Identities=14% Similarity=0.106 Sum_probs=70.7
Q ss_pred eeEeecCCCccchhhhccCC-CeeEEEecCCCCC-CchhHhhh----cc-----ccccccccCCCCCCCC-Cccchhhhc
Q 009719 375 RNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVIYD----RG-----LIGVYHDWCEPFSTYP-RTYDLIHVS 442 (527)
Q Consensus 375 RnvmDm~ag~GgFaAaL~~~-~VwvMnvvp~~~~-ntl~vi~e----RG-----LiG~~hdwce~fstYP-rtyDLiHa~ 442 (527)
..|+|+|||.|-.+.+|..+ |-. .|.-+|.. .-+..+-+ -| -+-+++ ...++..+ .+||+|=|+
T Consensus 230 ~~VLDLGCGtGvi~i~la~~~P~~--~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~--~D~l~~~~~~~fDlIlsN 305 (378)
T PRK15001 230 GEIVDLGCGNGVIGLTLLDKNPQA--KVVFVDESPMAVASSRLNVETNMPEALDRCEFMI--NNALSGVEPFRFNAVLCN 305 (378)
T ss_pred CeEEEEeccccHHHHHHHHhCCCC--EEEEEECCHHHHHHHHHHHHHcCcccCceEEEEE--ccccccCCCCCEEEEEEC
Confidence 47999999999999888654 221 11112221 11111111 01 122222 23344333 589999998
Q ss_pred CccccccCCCCCCCCCcccccceeecccccCCcEEEEeC--CHHHHHHHHHHHhcCCceeEEecCCCCCCCCceEEEEEe
Q 009719 443 GIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD--SPEVIDKVSRIANTVRWTAAVHDKEPGSNGREKILVATK 520 (527)
Q Consensus 443 ~~fs~~~~~~~~~~rC~~~~illEmDRILRP~G~~iird--~~~~~~~i~~i~~~l~W~~~~~~~e~~~~~~ekiLi~~K 520 (527)
-.|..-. .-.+ =....++-+.-|+|+|||.+++-- ..++..+++++... +... ....+=+|+-++|
T Consensus 306 PPfh~~~---~~~~-~ia~~l~~~a~~~LkpGG~L~iV~nr~l~y~~~L~~~fg~----~~~v----a~~~kf~vl~a~k 373 (378)
T PRK15001 306 PPFHQQH---ALTD-NVAWEMFHHARRCLKINGELYIVANRHLDYFHKLKKIFGN----CTTI----ATNNKFVVLKAVK 373 (378)
T ss_pred cCcccCc---cCCH-HHHHHHHHHHHHhcccCCEEEEEEecCcCHHHHHHHHcCC----ceEE----ccCCCEEEEEEEe
Confidence 6664211 0000 012457778899999999998863 34566667765442 2332 2223446777777
No 131
>PRK05785 hypothetical protein; Provisional
Probab=96.71 E-value=0.0012 Score=65.35 Aligned_cols=105 Identities=15% Similarity=0.153 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHhhhccCCCCeeeEeecCCCccchhhhccCC-CeeEEEecCCCCC-CchhHhhhccccccccccCCCC
Q 009719 352 RRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVIYDRGLIGVYHDWCEPF 429 (527)
Q Consensus 352 ~~W~~~v~~Y~~~l~~~i~~~~iRnvmDm~ag~GgFaAaL~~~-~VwvMnvvp~~~~-ntl~vi~eRGLiG~~hdwce~f 429 (527)
..|++.+-...... +.. -.+|||+|||+|-++..|.+. +. +|+-.|-. +-|...-+++ ...+.-.|.+
T Consensus 35 ~~wr~~~~~~l~~~---~~~--~~~VLDlGcGtG~~~~~l~~~~~~---~v~gvD~S~~Ml~~a~~~~--~~~~~d~~~l 104 (226)
T PRK05785 35 VRWRAELVKTILKY---CGR--PKKVLDVAAGKGELSYHFKKVFKY---YVVALDYAENMLKMNLVAD--DKVVGSFEAL 104 (226)
T ss_pred HHHHHHHHHHHHHh---cCC--CCeEEEEcCCCCHHHHHHHHhcCC---EEEEECCCHHHHHHHHhcc--ceEEechhhC
Confidence 56877665433211 122 258999999999999888766 33 34444543 5555555543 1122223444
Q ss_pred CCCCCccchhhhcCccccccCCCCCCCCCcccccceeecccccCCc
Q 009719 430 STYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEG 475 (527)
Q Consensus 430 stYPrtyDLiHa~~~fs~~~~~~~~~~rC~~~~illEmDRILRP~G 475 (527)
+.=..+||+|-++..+-.+ -+.+..|-||-|+|||.+
T Consensus 105 p~~d~sfD~v~~~~~l~~~---------~d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 105 PFRDKSFDVVMSSFALHAS---------DNIEKVIAEFTRVSRKQV 141 (226)
T ss_pred CCCCCCEEEEEecChhhcc---------CCHHHHHHHHHHHhcCce
Confidence 4223899999998766433 245789999999999953
No 132
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=96.71 E-value=0.00034 Score=68.74 Aligned_cols=95 Identities=12% Similarity=0.219 Sum_probs=55.8
Q ss_pred eeEeecCCCccchhhhccCC---C-eeEEEecCCCCCCchhHhhhc----cc---cc-cccccCCCCCCCC-Cccchhhh
Q 009719 375 RNIMDMNAFFGGFAAALTSD---P-VWVMNVVPARKSSTLSVIYDR----GL---IG-VYHDWCEPFSTYP-RTYDLIHV 441 (527)
Q Consensus 375 RnvmDm~ag~GgFaAaL~~~---~-VwvMnvvp~~~~ntl~vi~eR----GL---iG-~~hdwce~fstYP-rtyDLiHa 441 (527)
.+|||+|||.|.++.+|.+. | .=+.-|=+. ++-|..+-++ +. +- +..|.+ .+| ..+|++.+
T Consensus 55 ~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s--~~ml~~a~~~~~~~~~~~~v~~~~~d~~----~~~~~~~d~v~~ 128 (239)
T TIGR00740 55 SNVYDLGCSRGAATLSARRNINQPNVKIIGIDNS--QPMVERCRQHIAAYHSEIPVEILCNDIR----HVEIKNASMVIL 128 (239)
T ss_pred CEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCC--HHHHHHHHHHHHhcCCCCCeEEEECChh----hCCCCCCCEEee
Confidence 47999999999998877543 2 222222221 1333332221 21 11 112222 223 46898888
Q ss_pred cCccccccCCCCCCCCCcccccceeecccccCCcEEEEeCC
Q 009719 442 SGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS 482 (527)
Q Consensus 442 ~~~fs~~~~~~~~~~rC~~~~illEmDRILRP~G~~iird~ 482 (527)
...+..+. . =....+|-||-|+|+|||.+++.|.
T Consensus 129 ~~~l~~~~------~-~~~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 129 NFTLQFLP------P-EDRIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred ecchhhCC------H-HHHHHHHHHHHHhcCCCeEEEEeec
Confidence 77665432 0 0135789999999999999999963
No 133
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=96.69 E-value=0.0093 Score=58.16 Aligned_cols=89 Identities=18% Similarity=0.288 Sum_probs=55.3
Q ss_pred hhccccccccC--CeeEEeeccCcChHHHHHHHHHc----CCC-cEEeeccccCCCCCCCcccEEEecCccc------cc
Q 009719 143 VASFGGSMLSE--NILTLSFAPRDSHKAQIQFALER----GIP-AFVAMLGTRRLPFPAFSFDIVHCSRCLI------PF 209 (527)
Q Consensus 143 vgsfga~Ll~r--~V~~msiAp~D~seaqvq~A~eR----g~p-a~~~v~dae~LPFpD~SFDlV~cs~~l~------hw 209 (527)
.|.++..+... +. .+...|.++.+++.|+++ ++. +.+..++... ++++++||+|+|.--.+ ++
T Consensus 98 ~G~~~~~l~~~~~~~---~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~~~~~~~~~ 173 (251)
T TIGR03534 98 SGAIALALAKERPDA---RVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFE-PLPGGKFDLIVSNPPYIPEADIHLL 173 (251)
T ss_pred HhHHHHHHHHHCCCC---EEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhc-cCcCCceeEEEECCCCCchhhhhhc
Confidence 34444445443 22 233346777888877643 444 5566677654 67789999999852211 11
Q ss_pred ccC-------------------hHHHHHHHhhcccCCcEEEEecC
Q 009719 210 TAY-------------------NATYLIEVDRLLRPGGYLVISGP 235 (527)
Q Consensus 210 ~d~-------------------~~~aL~Ei~RVLRPGG~lviS~p 235 (527)
... -..++.++.|+|+|||.+++...
T Consensus 174 ~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~ 218 (251)
T TIGR03534 174 DPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIG 218 (251)
T ss_pred ChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEEC
Confidence 100 01368899999999999999754
No 134
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=96.67 E-value=0.00074 Score=56.99 Aligned_cols=91 Identities=18% Similarity=0.312 Sum_probs=43.7
Q ss_pred eecCCCccchhhhccCC--Ce--eEEEecCCCCCCchhHhhhccccc---cccccCCCCCCCC-CccchhhhcCcccccc
Q 009719 378 MDMNAFFGGFAAALTSD--PV--WVMNVVPARKSSTLSVIYDRGLIG---VYHDWCEPFSTYP-RTYDLIHVSGIESLIK 449 (527)
Q Consensus 378 mDm~ag~GgFaAaL~~~--~V--wvMnvvp~~~~ntl~vi~eRGLiG---~~hdwce~fstYP-rtyDLiHa~~~fs~~~ 449 (527)
||+|||.|.+...|.+. .. ..+-+-|.--...-+-+.+.+.-. +-.+--+.+...+ .+||+|.+..++....
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~ 80 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHLE 80 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--S
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhhh
Confidence 79999999999999766 33 222222221100001122222100 1111112233334 5999999999998663
Q ss_pred CCCCCCCCCcccccceeecccccCCcEE
Q 009719 450 NPGSNKNSCSLVDLMVEMDRMLRPEGTV 477 (527)
Q Consensus 450 ~~~~~~~rC~~~~illEmDRILRP~G~~ 477 (527)
++..+|-.+-++|+|||.+
T Consensus 81 ---------~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 81 ---------DIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp ----------HHHHHHHHTTT-TSS-EE
T ss_pred ---------hHHHHHHHHHHHcCCCCCC
Confidence 3578899999999999985
No 135
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=96.67 E-value=0.0029 Score=68.07 Aligned_cols=82 Identities=20% Similarity=0.149 Sum_probs=53.4
Q ss_pred cCcChHHHHHHHHHc----CCCcEE--eeccccCCCC--CCCcccEEEe----cC--ccccccc-----C----------
Q 009719 162 PRDSHKAQIQFALER----GIPAFV--AMLGTRRLPF--PAFSFDIVHC----SR--CLIPFTA-----Y---------- 212 (527)
Q Consensus 162 p~D~seaqvq~A~eR----g~pa~~--~v~dae~LPF--pD~SFDlV~c----s~--~l~hw~d-----~---------- 212 (527)
..|.++.+++.++++ |+...+ ..+|+..+++ ++++||.|++ |. .+.+.++ .
T Consensus 267 a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~l 346 (426)
T TIGR00563 267 ALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAEL 346 (426)
T ss_pred EEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHH
Confidence 336777787776543 555333 4456655555 6789999984 32 2333222 1
Q ss_pred hHHHHHHHhhcccCCcEEEEecCCCCCCCch
Q 009719 213 NATYLIEVDRLLRPGGYLVISGPPVQWPKQD 243 (527)
Q Consensus 213 ~~~aL~Ei~RVLRPGG~lviS~pp~~~~~~~ 243 (527)
+..+|.++.|+|||||+|++|+-......+.
T Consensus 347 Q~~lL~~a~~~LkpgG~lvystcs~~~~Ene 377 (426)
T TIGR00563 347 QSEILDAIWPLLKTGGTLVYATCSVLPEENS 377 (426)
T ss_pred HHHHHHHHHHhcCCCcEEEEEeCCCChhhCH
Confidence 2349999999999999999999765544333
No 136
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=96.67 E-value=0.0041 Score=67.00 Aligned_cols=100 Identities=19% Similarity=0.238 Sum_probs=61.7
Q ss_pred hhccccccccCCeeEEeeccCcChHHHHHHHHHc----CCCcEEeeccccCCC--CCCCcccEEE----ecCc--c----
Q 009719 143 VASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIPAFVAMLGTRRLP--FPAFSFDIVH----CSRC--L---- 206 (527)
Q Consensus 143 vgsfga~Ll~r~V~~msiAp~D~seaqvq~A~eR----g~pa~~~v~dae~LP--FpD~SFDlV~----cs~~--l---- 206 (527)
.|+.+.++..+.-. ..+...|.++.+++.++++ |+.+.+..+|+..++ +++++||.|+ |+.. +
T Consensus 255 ~G~~t~~la~~~~~-~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~Pcs~~G~~~~~p 333 (427)
T PRK10901 255 PGGKTAHILELAPQ-AQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDAPCSATGVIRRHP 333 (427)
T ss_pred CChHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECCCCCcccccccCc
Confidence 44444455443210 1233337778888877654 555667778887765 4578999999 4421 1
Q ss_pred -cccccC----------hHHHHHHHhhcccCCcEEEEecCCCCCCCch
Q 009719 207 -IPFTAY----------NATYLIEVDRLLRPGGYLVISGPPVQWPKQD 243 (527)
Q Consensus 207 -~hw~d~----------~~~aL~Ei~RVLRPGG~lviS~pp~~~~~~~ 243 (527)
+.|... ...+|.++.++|||||++++|+-......+.
T Consensus 334 ~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene 381 (427)
T PRK10901 334 DIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPEENE 381 (427)
T ss_pred cccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhCH
Confidence 112211 1248999999999999999998655444333
No 137
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=96.61 E-value=0.0044 Score=60.68 Aligned_cols=82 Identities=16% Similarity=0.251 Sum_probs=57.6
Q ss_pred ccccccCCeeEEeeccCcChHHH----HHHHHHcCCCcEEeeccccCCCCCCCcccEEEecCcccccccCh-HHHHHHHh
Q 009719 147 GGSMLSENILTLSFAPRDSHKAQ----IQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYN-ATYLIEVD 221 (527)
Q Consensus 147 ga~Ll~r~V~~msiAp~D~seaq----vq~A~eRg~pa~~~v~dae~LPFpD~SFDlV~cs~~l~hw~d~~-~~aL~Ei~ 221 (527)
+-||..+|..+.++ |.++.. .++|.++++++...+.|.....++ +.||+|+++.+++|..... ...+..|.
T Consensus 45 alyLA~~G~~VtAv---D~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~-~~yD~I~st~v~~fL~~~~~~~i~~~m~ 120 (192)
T PF03848_consen 45 ALYLASQGFDVTAV---DISPVALEKLQRLAEEEGLDIRTRVADLNDFDFP-EEYDFIVSTVVFMFLQRELRPQIIENMK 120 (192)
T ss_dssp HHHHHHTT-EEEEE---ESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-T-TTEEEEEEESSGGGS-GGGHHHHHHHHH
T ss_pred HHHHHHCCCeEEEE---ECCHHHHHHHHHHHhhcCceeEEEEecchhcccc-CCcCEEEEEEEeccCCHHHHHHHHHHHH
Confidence 44788888766665 444433 345666788888888887777776 6899999988887776543 24889999
Q ss_pred hcccCCcEEEE
Q 009719 222 RLLRPGGYLVI 232 (527)
Q Consensus 222 RVLRPGG~lvi 232 (527)
.-|+|||++++
T Consensus 121 ~~~~pGG~~li 131 (192)
T PF03848_consen 121 AATKPGGYNLI 131 (192)
T ss_dssp HTEEEEEEEEE
T ss_pred hhcCCcEEEEE
Confidence 99999999988
No 138
>PTZ00146 fibrillarin; Provisional
Probab=96.61 E-value=0.0035 Score=65.08 Aligned_cols=88 Identities=14% Similarity=0.146 Sum_probs=54.9
Q ss_pred hhccccccccC-----CeeEEeeccCcChHHHHHHHHHcCCCcEEeeccccC---CCCCCCcccEEEecCcccccccChH
Q 009719 143 VASFGGSMLSE-----NILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRR---LPFPAFSFDIVHCSRCLIPFTAYNA 214 (527)
Q Consensus 143 vgsfga~Ll~r-----~V~~msiAp~D~seaqvq~A~eRg~pa~~~v~dae~---LPFpD~SFDlV~cs~~l~hw~d~~~ 214 (527)
.|.|..+|.+. -|.++++++. ..+.+++.|.+| ..+.....|+.. ++++..+||+|++... . ++...
T Consensus 143 ~G~~t~~lAdiVG~~G~VyAVD~s~r-~~~dLl~~ak~r-~NI~~I~~Da~~p~~y~~~~~~vDvV~~Dva-~--pdq~~ 217 (293)
T PTZ00146 143 SGTTVSHVSDLVGPEGVVYAVEFSHR-SGRDLTNMAKKR-PNIVPIIEDARYPQKYRMLVPMVDVIFADVA-Q--PDQAR 217 (293)
T ss_pred CCHHHHHHHHHhCCCCEEEEEECcHH-HHHHHHHHhhhc-CCCEEEECCccChhhhhcccCCCCEEEEeCC-C--cchHH
Confidence 45666666554 2556665532 123466777665 233455566532 3334568999998864 2 23344
Q ss_pred HHHHHHhhcccCCcEEEEecC
Q 009719 215 TYLIEVDRLLRPGGYLVISGP 235 (527)
Q Consensus 215 ~aL~Ei~RVLRPGG~lviS~p 235 (527)
.++.|+.|+|||||+|++.-.
T Consensus 218 il~~na~r~LKpGG~~vI~ik 238 (293)
T PTZ00146 218 IVALNAQYFLKNGGHFIISIK 238 (293)
T ss_pred HHHHHHHHhccCCCEEEEEEe
Confidence 577899999999999999643
No 139
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=96.59 E-value=0.0046 Score=61.92 Aligned_cols=97 Identities=15% Similarity=0.127 Sum_probs=70.0
Q ss_pred CccccCCCCCCCCCCCCCccchhhhccccccccCCeeEEeeccCcChHHHHHHHHH-----------------cCCCcEE
Q 009719 120 PLCLIPPPRGYKIPVPWPESLSKVASFGGSMLSENILTLSFAPRDSHKAQIQFALE-----------------RGIPAFV 182 (527)
Q Consensus 120 ~~Clvp~P~gY~~P~~WP~Srd~vgsfga~Ll~r~V~~msiAp~D~seaqvq~A~e-----------------Rg~pa~~ 182 (527)
.+.|||.=- +|+| +.+|.++|..++.+ |.|+.-|+.+.+ ++..+.+
T Consensus 45 ~rvLvPgCG---------kg~D-----~~~LA~~G~~V~Gv---DlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~ 107 (226)
T PRK13256 45 SVCLIPMCG---------CSID-----MLFFLSKGVKVIGI---ELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEI 107 (226)
T ss_pred CeEEEeCCC---------ChHH-----HHHHHhCCCcEEEE---ecCHHHHHHHHHHcCCCcceecccccceeccCceEE
Confidence 467887654 6777 45677777655555 666666666543 2445677
Q ss_pred eeccccCCCCC---CCcccEEEecCcccccccChH-HHHHHHhhcccCCcEEEEe
Q 009719 183 AMLGTRRLPFP---AFSFDIVHCSRCLIPFTAYNA-TYLIEVDRLLRPGGYLVIS 233 (527)
Q Consensus 183 ~v~dae~LPFp---D~SFDlV~cs~~l~hw~d~~~-~aL~Ei~RVLRPGG~lviS 233 (527)
.++|.-.|+.. -+.||+|.=..++++++.+.. .+..-|.++|+|||.+++-
T Consensus 108 ~~gD~f~l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll 162 (226)
T PRK13256 108 YVADIFNLPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLL 162 (226)
T ss_pred EEccCcCCCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 88998888753 268999987777888876543 5999999999999999874
No 140
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=96.57 E-value=0.0017 Score=62.54 Aligned_cols=123 Identities=14% Similarity=0.176 Sum_probs=69.4
Q ss_pred cccchhhHHHHHHHHHHHHHhhhccCCCCeeeEeecCCCccchhhhccCCCeeEEEecCCCCCCchhHhhhc----cc--
Q 009719 345 DVFEADSRRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKSSTLSVIYDR----GL-- 418 (527)
Q Consensus 345 ~~f~~d~~~W~~~v~~Y~~~l~~~i~~~~iRnvmDm~ag~GgFaAaL~~~~VwvMnvvp~~~~ntl~vi~eR----GL-- 418 (527)
..|....+.=..++....+.+...-....--+|||+|||.|.++..+.+...-++-+-+. +..+..+-++ |+
T Consensus 17 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s--~~~~~~a~~~~~~~~~~~ 94 (224)
T TIGR01983 17 GKFKPLHKMNPLRLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARLGANVTGIDAS--EENIEVAKLHAKKDPLLK 94 (224)
T ss_pred CcHHHHHHhhHHHHHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhcCCeEEEEeCC--HHHHHHHHHHHHHcCCCc
Confidence 335555554444555555544311001123489999999999988875543223222221 1222222221 22
Q ss_pred c----ccccccCCCCCCCCCccchhhhcCccccccCCCCCCCCCcccccceeecccccCCcEEEEeC
Q 009719 419 I----GVYHDWCEPFSTYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 481 (527)
Q Consensus 419 i----G~~hdwce~fstYPrtyDLiHa~~~fs~~~~~~~~~~rC~~~~illEmDRILRP~G~~iird 481 (527)
+ +-..++.. ..+.+||+|.+..++.... +...+|-++.++|+|||++++.+
T Consensus 95 ~~~~~~d~~~~~~---~~~~~~D~i~~~~~l~~~~---------~~~~~l~~~~~~L~~gG~l~i~~ 149 (224)
T TIGR01983 95 IEYRCTSVEDLAE---KGAKSFDVVTCMEVLEHVP---------DPQAFIRACAQLLKPGGILFFST 149 (224)
T ss_pred eEEEeCCHHHhhc---CCCCCccEEEehhHHHhCC---------CHHHHHHHHHHhcCCCcEEEEEe
Confidence 1 22222221 1257899999987776432 34678999999999999999875
No 141
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=96.57 E-value=0.00036 Score=68.64 Aligned_cols=153 Identities=20% Similarity=0.282 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHhhhccCCCCeeeEeecCCCccchhhhccCC--CeeEEEecCCCCCCchhHhhhc--cccc---ccccc
Q 009719 353 RWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTSD--PVWVMNVVPARKSSTLSVIYDR--GLIG---VYHDW 425 (527)
Q Consensus 353 ~W~~~v~~Y~~~l~~~i~~~~iRnvmDm~ag~GgFaAaL~~~--~VwvMnvvp~~~~ntl~vi~eR--GLiG---~~hdw 425 (527)
.|-++.+ |-..|.-.+...+|+++++.|||-|-|.+.|..+ .+.++-++|. -|..+-+| |+-. .-.|-
T Consensus 24 ~~YE~~K-~~~~l~aaLp~~ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~----Al~~Ar~Rl~~~~~V~~~~~dv 98 (201)
T PF05401_consen 24 SWYERRK-YRATLLAALPRRRYRRALEVGCSIGVLTERLAPRCDRLLAVDISPR----ALARARERLAGLPHVEWIQADV 98 (201)
T ss_dssp -HHHHHH-HHHHHHHHHTTSSEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HH----HHHHHHHHTTT-SSEEEEES-T
T ss_pred CHHHHHH-HHHHHHHhcCccccceeEecCCCccHHHHHHHHhhCceEEEeCCHH----HHHHHHHhcCCCCCeEEEECcC
Confidence 3444432 3333332378899999999999999999999665 5777766643 12222221 1110 01111
Q ss_pred CCCCCCCCCccchhhhcCccccccCCCCCCCCCcccccceeecccccCCcEEEEeCCHH----------HHHHHHHHHhc
Q 009719 426 CEPFSTYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSPE----------VIDKVSRIANT 495 (527)
Q Consensus 426 ce~fstYPrtyDLiHa~~~fs~~~~~~~~~~rC~~~~illEmDRILRP~G~~iird~~~----------~~~~i~~i~~~ 495 (527)
.+.. -+.+|||||++-++=-+. +.=.+..++-.|...|+|||.+|+-.-.+ =-+.|.+++..
T Consensus 99 p~~~--P~~~FDLIV~SEVlYYL~------~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wgh~~ga~tv~~~~~~ 170 (201)
T PF05401_consen 99 PEFW--PEGRFDLIVLSEVLYYLD------DAEDLRAALDRLVAALAPGGHLVFGHARDANCRRWGHAAGAETVLEMLQE 170 (201)
T ss_dssp TT-----SS-EEEEEEES-GGGSS------SHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT-S--HHHHHHHHHH
T ss_pred CCCC--CCCCeeEEEEehHhHcCC------CHHHHHHHHHHHHHHhCCCCEEEEEEecCCcccccCcccchHHHHHHHHH
Confidence 1211 138999999998876553 22334557778888999999999964211 12344455444
Q ss_pred CCceeEEecCCCCCCCCceEEEEE
Q 009719 496 VRWTAAVHDKEPGSNGREKILVAT 519 (527)
Q Consensus 496 l~W~~~~~~~e~~~~~~ekiLi~~ 519 (527)
.-=++.-..-. |....|.-|+++
T Consensus 171 ~~~~~~~~~~~-~~~~~~~~~~~~ 193 (201)
T PF05401_consen 171 HLTEVERVECR-GGSPNEDCLLAR 193 (201)
T ss_dssp HSEEEEEEEEE--SSTTSEEEEEE
T ss_pred HhhheeEEEEc-CCCCCCceEeee
Confidence 44444433222 223345555553
No 142
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=96.57 E-value=0.00073 Score=58.23 Aligned_cols=90 Identities=26% Similarity=0.390 Sum_probs=56.8
Q ss_pred hccccccccCCeeEEeeccCcChHHHHHHHHHc----CC--CcEEeeccccCCC--CCCCcccEEEecCccccccc----
Q 009719 144 ASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLGTRRLP--FPAFSFDIVHCSRCLIPFTA---- 211 (527)
Q Consensus 144 gsfga~Ll~r~V~~msiAp~D~seaqvq~A~eR----g~--pa~~~v~dae~LP--FpD~SFDlV~cs~~l~hw~d---- 211 (527)
|.+...++.++ ...+...|.++..++.|+++ +. ...+.++|...++ +++++||+|+++-=......
T Consensus 12 G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~~~~~~~~~~ 89 (117)
T PF13659_consen 12 GTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPYGPRSGDKAA 89 (117)
T ss_dssp CHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--STTSBTT----
T ss_pred HHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCCccccccchh
Confidence 34444444444 12233336667777777654 22 3577888877775 89999999999854332211
Q ss_pred ---ChHHHHHHHhhcccCCcEEEEecC
Q 009719 212 ---YNATYLIEVDRLLRPGGYLVISGP 235 (527)
Q Consensus 212 ---~~~~aL~Ei~RVLRPGG~lviS~p 235 (527)
....+++++.|+|||||.+++..|
T Consensus 90 ~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 90 LRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 112489999999999999998765
No 143
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=96.55 E-value=0.0044 Score=66.90 Aligned_cols=79 Identities=23% Similarity=0.211 Sum_probs=54.4
Q ss_pred cCcChHHHHHHHHHc----CCC-cEEeeccccCCC----CCCCcccEEEe----cC--ccccccc-----C---------
Q 009719 162 PRDSHKAQIQFALER----GIP-AFVAMLGTRRLP----FPAFSFDIVHC----SR--CLIPFTA-----Y--------- 212 (527)
Q Consensus 162 p~D~seaqvq~A~eR----g~p-a~~~v~dae~LP----FpD~SFDlV~c----s~--~l~hw~d-----~--------- 212 (527)
..|.++.+++.++++ |+. +.+..+|+..++ +.+++||.|++ |. ++.+-++ .
T Consensus 282 a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~ 361 (434)
T PRK14901 282 AVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAP 361 (434)
T ss_pred EEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHH
Confidence 337778888777543 554 456678887776 66789999994 32 2222221 0
Q ss_pred -hHHHHHHHhhcccCCcEEEEecCCCCCC
Q 009719 213 -NATYLIEVDRLLRPGGYLVISGPPVQWP 240 (527)
Q Consensus 213 -~~~aL~Ei~RVLRPGG~lviS~pp~~~~ 240 (527)
+...|.++.++|||||+|++|+-..+..
T Consensus 362 ~Q~~iL~~a~~~lkpgG~lvystcsi~~~ 390 (434)
T PRK14901 362 LQAELLESLAPLLKPGGTLVYATCTLHPA 390 (434)
T ss_pred HHHHHHHHHHHhcCCCCEEEEEeCCCChh
Confidence 2348999999999999999998755543
No 144
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=96.53 E-value=0.0019 Score=62.00 Aligned_cols=143 Identities=13% Similarity=0.218 Sum_probs=78.7
Q ss_pred cccCccccch--hhHHHHHHHHHHH-HHhhhccCCCCeeeEeecCCCccchhhhcc---CC--CeeEEEecCCCCCCchh
Q 009719 340 MKNGYDVFEA--DSRRWRRRVAYYK-NTLNVKLGTPAIRNIMDMNAFFGGFAAALT---SD--PVWVMNVVPARKSSTLS 411 (527)
Q Consensus 340 ~g~~~~~f~~--d~~~W~~~v~~Y~-~~l~~~i~~~~iRnvmDm~ag~GgFaAaL~---~~--~VwvMnvvp~~~~ntl~ 411 (527)
+|+..+.|.. +...++..+..=. ..+. +..+ -.|+|+|||.|.|+.++. .. .|..+-.-| ..+.
T Consensus 8 ~~~~d~~~~~~~~~~~t~~~~r~~~l~~l~--~~~~--~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~----~~~~ 79 (198)
T PRK00377 8 PGIPDEEFERDEEIPMTKEEIRALALSKLR--LRKG--DMILDIGCGTGSVTVEASLLVGETGKVYAVDKDE----KAIN 79 (198)
T ss_pred CCCChHHHccCCCCCCCHHHHHHHHHHHcC--CCCc--CEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCH----HHHH
Confidence 4666667775 3347777664311 1121 2222 479999999999977542 22 344433322 2222
Q ss_pred Hhh----hccccc---c-ccccCCCCCCCCCccchhhhcCccccccCCCCCCCCCcccccceeecccccCCcEEEEeC-C
Q 009719 412 VIY----DRGLIG---V-YHDWCEPFSTYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD-S 482 (527)
Q Consensus 412 vi~----eRGLiG---~-~hdwce~fstYPrtyDLiHa~~~fs~~~~~~~~~~rC~~~~illEmDRILRP~G~~iird-~ 482 (527)
.+- .-|+.. + ..|..+.++..+..||+|.... ....+..++-++-|+|+|||.+++.- .
T Consensus 80 ~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~~------------~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 147 (198)
T PRK00377 80 LTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIGG------------GSEKLKEIISASWEIIKKGGRIVIDAIL 147 (198)
T ss_pred HHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEECC------------CcccHHHHHHHHHHHcCCCcEEEEEeec
Confidence 221 123211 1 1222222222334688776531 12245678889999999999999842 4
Q ss_pred HHHHHHHHHHHhcCCceeEE
Q 009719 483 PEVIDKVSRIANTVRWTAAV 502 (527)
Q Consensus 483 ~~~~~~i~~i~~~l~W~~~~ 502 (527)
.+.+.++...++.+.++..+
T Consensus 148 ~~~~~~~~~~l~~~g~~~~~ 167 (198)
T PRK00377 148 LETVNNALSALENIGFNLEI 167 (198)
T ss_pred HHHHHHHHHHHHHcCCCeEE
Confidence 55677777777766665543
No 145
>PTZ00146 fibrillarin; Provisional
Probab=96.53 E-value=0.0037 Score=64.85 Aligned_cols=98 Identities=11% Similarity=0.174 Sum_probs=60.0
Q ss_pred cCCCCeeeEeecCCCccchhhhccCC-----CeeEEEecCCCCCCchhHhhhc-cccccccccCCCCCCCC---Cccchh
Q 009719 369 LGTPAIRNIMDMNAFFGGFAAALTSD-----PVWVMNVVPARKSSTLSVIYDR-GLIGVYHDWCEPFSTYP---RTYDLI 439 (527)
Q Consensus 369 i~~~~iRnvmDm~ag~GgFaAaL~~~-----~VwvMnvvp~~~~ntl~vi~eR-GLiG~~hdwce~fstYP---rtyDLi 439 (527)
|+.+. +|||+|||.|+|...|.+. .|+.+-+.|.-..+.+.++-+| +++-+..|-+.+. .|+ -++|+|
T Consensus 130 IkpG~--~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~-~y~~~~~~vDvV 206 (293)
T PTZ00146 130 IKPGS--KVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQ-KYRMLVPMVDVI 206 (293)
T ss_pred cCCCC--EEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChh-hhhcccCCCCEE
Confidence 55563 7999999999988887543 3555544332122344444443 5666777765442 122 357777
Q ss_pred hhcCccccccCCCCCCCCCcccccceeecccccCCcEEEEe
Q 009719 440 HVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 480 (527)
Q Consensus 440 Ha~~~fs~~~~~~~~~~rC~~~~illEmDRILRP~G~~iir 480 (527)
=++-. .. + ....+++|+.|+|+|||+++|.
T Consensus 207 ~~Dva-~p--------d--q~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 207 FADVA-QP--------D--QARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred EEeCC-Cc--------c--hHHHHHHHHHHhccCCCEEEEE
Confidence 44321 11 1 1234667999999999999994
No 146
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=96.50 E-value=0.0049 Score=59.93 Aligned_cols=65 Identities=17% Similarity=0.095 Sum_probs=46.5
Q ss_pred cChHHHHHHHHHc----CCC-cEEeeccccCCCCCCCcccEEEecCcccccccChHHHHHHHhhcccCCcEEEEecC
Q 009719 164 DSHKAQIQFALER----GIP-AFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 235 (527)
Q Consensus 164 D~seaqvq~A~eR----g~p-a~~~v~dae~LPFpD~SFDlV~cs~~l~hw~d~~~~aL~Ei~RVLRPGG~lviS~p 235 (527)
|.++.+++.|+++ ++. +.+..+|+...+...+.||+|++..+..+ ...++.+.|||||+|++...
T Consensus 109 D~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~~~-------~~~~~~~~L~~gG~lv~~~~ 178 (215)
T TIGR00080 109 ERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLAPYDRIYVTAAGPK-------IPEALIDQLKEGGILVMPVG 178 (215)
T ss_pred eCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccCCCCEEEEcCCccc-------ccHHHHHhcCcCcEEEEEEc
Confidence 5567788877654 443 45666777665555679999998866433 45678899999999998653
No 147
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=96.50 E-value=0.0062 Score=61.29 Aligned_cols=90 Identities=17% Similarity=0.190 Sum_probs=63.7
Q ss_pred hccccccccCCeeEEeeccCcChHHHHHHHHHcCCCcEEeecc-ccCCCCCCCcccEEEecCccccccc-------ChH-
Q 009719 144 ASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLG-TRRLPFPAFSFDIVHCSRCLIPFTA-------YNA- 214 (527)
Q Consensus 144 gsfga~Ll~r~V~~msiAp~D~seaqvq~A~eRg~pa~~~v~d-ae~LPFpD~SFDlV~cs~~l~hw~d-------~~~- 214 (527)
|--|..|.+.|-.-+.+ |+|..|+++|.++-+...+..+| .+.|||+.++||.|++-.++ +|.- ..+
T Consensus 62 GLSg~vL~~~Gh~wiGv---DiSpsML~~a~~~e~egdlil~DMG~GlpfrpGtFDg~ISISAv-QWLcnA~~s~~~P~~ 137 (270)
T KOG1541|consen 62 GLSGSVLSDSGHQWIGV---DISPSMLEQAVERELEGDLILCDMGEGLPFRPGTFDGVISISAV-QWLCNADKSLHVPKK 137 (270)
T ss_pred CcchheeccCCceEEee---cCCHHHHHHHHHhhhhcCeeeeecCCCCCCCCCccceEEEeeee-eeecccCccccChHH
Confidence 33345666777544444 88999999999876654444334 48999999999999976553 6632 111
Q ss_pred ---HHHHHHhhcccCCcEEEEecCCC
Q 009719 215 ---TYLIEVDRLLRPGGYLVISGPPV 237 (527)
Q Consensus 215 ---~aL~Ei~RVLRPGG~lviS~pp~ 237 (527)
.++.-++.+|++|++.++--.|.
T Consensus 138 Rl~~FF~tLy~~l~rg~raV~QfYpe 163 (270)
T KOG1541|consen 138 RLLRFFGTLYSCLKRGARAVLQFYPE 163 (270)
T ss_pred HHHHHhhhhhhhhccCceeEEEeccc
Confidence 25777999999999999986543
No 148
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=96.49 E-value=0.00075 Score=67.15 Aligned_cols=98 Identities=7% Similarity=0.112 Sum_probs=56.3
Q ss_pred eeEeecCCCccchhhhccC---CC-eeEEEecCCCCCCchhHhhhc----cccccccccCCCCCCCC-CccchhhhcCcc
Q 009719 375 RNIMDMNAFFGGFAAALTS---DP-VWVMNVVPARKSSTLSVIYDR----GLIGVYHDWCEPFSTYP-RTYDLIHVSGIE 445 (527)
Q Consensus 375 RnvmDm~ag~GgFaAaL~~---~~-VwvMnvvp~~~~ntl~vi~eR----GLiG~~hdwce~fstYP-rtyDLiHa~~~f 445 (527)
..|||+|||.|.++.+|.. .| .-+.-|=+. +.-+..+-+| |+-.-..=.+..+...| ..||+|-+...+
T Consensus 58 ~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S--~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~~~~l 135 (247)
T PRK15451 58 TQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNS--PAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFTL 135 (247)
T ss_pred CEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCC--HHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEehhhHH
Confidence 4699999999999877753 23 323333222 1333333222 22111111122223333 458988776655
Q ss_pred ccccCCCCCCCCCcccccceeecccccCCcEEEEeC
Q 009719 446 SLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 481 (527)
Q Consensus 446 s~~~~~~~~~~rC~~~~illEmDRILRP~G~~iird 481 (527)
.... .-....++-||-|+|+|||.+++.|
T Consensus 136 ~~l~-------~~~~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 136 QFLE-------PSERQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred HhCC-------HHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 5432 1223679999999999999999986
No 149
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=96.48 E-value=0.0015 Score=63.54 Aligned_cols=95 Identities=15% Similarity=0.210 Sum_probs=59.8
Q ss_pred eeEeecCCCccchhhhccCCCeeEEEecCCCCC-CchhHhhhc----cccccc--cccCCCCCCCCCccchhhhcCcccc
Q 009719 375 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GLIGVY--HDWCEPFSTYPRTYDLIHVSGIESL 447 (527)
Q Consensus 375 RnvmDm~ag~GgFaAaL~~~~VwvMnvvp~~~~-ntl~vi~eR----GLiG~~--hdwce~fstYPrtyDLiHa~~~fs~ 447 (527)
..|||+|||.|.++..|.+... +++=++.. +.+..+-++ |+-..+ .++.+-....+-+||+|.++.++..
T Consensus 50 ~~vLdiG~G~G~~~~~l~~~~~---~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~~ 126 (233)
T PRK05134 50 KRVLDVGCGGGILSESMARLGA---DVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLEH 126 (233)
T ss_pred CeEEEeCCCCCHHHHHHHHcCC---eEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHhhc
Confidence 3599999999999988876643 23333322 333333332 331112 2222111112368999999887775
Q ss_pred ccCCCCCCCCCcccccceeecccccCCcEEEEeC
Q 009719 448 IKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 481 (527)
Q Consensus 448 ~~~~~~~~~rC~~~~illEmDRILRP~G~~iird 481 (527)
.. +...+|-++.|+|+|||.+++..
T Consensus 127 ~~---------~~~~~l~~~~~~L~~gG~l~v~~ 151 (233)
T PRK05134 127 VP---------DPASFVRACAKLVKPGGLVFFST 151 (233)
T ss_pred cC---------CHHHHHHHHHHHcCCCcEEEEEe
Confidence 42 34678899999999999999975
No 150
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=96.47 E-value=0.01 Score=48.02 Aligned_cols=71 Identities=31% Similarity=0.379 Sum_probs=52.4
Q ss_pred CcChHHHHHHHHHcCC--C---cEEeeccccC--CCCCC-CcccEEEecCcccccccChHHHHHHHhhcccCCcEEEEec
Q 009719 163 RDSHKAQIQFALERGI--P---AFVAMLGTRR--LPFPA-FSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISG 234 (527)
Q Consensus 163 ~D~seaqvq~A~eRg~--p---a~~~v~dae~--LPFpD-~SFDlV~cs~~l~hw~d~~~~aL~Ei~RVLRPGG~lviS~ 234 (527)
.|.+..+++.+..+.. . ..+..++... +||.+ .+||++ ++....|+.+ ....+.++.|+|+|||.++++.
T Consensus 78 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~~~-~~~~~~~~~~~l~~~g~~~~~~ 155 (257)
T COG0500 78 VDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLVLHLLP-PAKALRELLRVLKPGGRLVLSD 155 (257)
T ss_pred EeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeeeehhcCC-HHHHHHHHHHhcCCCcEEEEEe
Confidence 4667777776554331 1 2455566555 89998 599999 7777777766 4459999999999999999987
Q ss_pred C
Q 009719 235 P 235 (527)
Q Consensus 235 p 235 (527)
.
T Consensus 156 ~ 156 (257)
T COG0500 156 L 156 (257)
T ss_pred c
Confidence 6
No 151
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=96.46 E-value=0.0033 Score=61.47 Aligned_cols=133 Identities=16% Similarity=0.228 Sum_probs=69.0
Q ss_pred eeEeecCCCccchhhhccCC-----CeeEEEecCCCCCCchhHhhhccccccccccCCC---------CCCCCCccchhh
Q 009719 375 RNIMDMNAFFGGFAAALTSD-----PVWVMNVVPARKSSTLSVIYDRGLIGVYHDWCEP---------FSTYPRTYDLIH 440 (527)
Q Consensus 375 RnvmDm~ag~GgFaAaL~~~-----~VwvMnvvp~~~~ntl~vi~eRGLiG~~hdwce~---------fstYPrtyDLiH 440 (527)
.+|||+|||.|+|+..|.+. .|..+-+.|.... .|+.-+-.|..+. +. +.+||+|-
T Consensus 53 ~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~~~--------~~v~~i~~D~~~~~~~~~i~~~~~--~~~~D~V~ 122 (209)
T PRK11188 53 MTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMDPI--------VGVDFLQGDFRDELVLKALLERVG--DSKVQVVM 122 (209)
T ss_pred CEEEEEcccCCHHHHHHHHHcCCCceEEEEecccccCC--------CCcEEEecCCCChHHHHHHHHHhC--CCCCCEEe
Confidence 47999999999997666432 2333333331111 1221112222221 21 35789988
Q ss_pred hcCccccccCCCCC--CCCCcccccceeecccccCCcEEEEeC-----CHHHHHHHHHHHhcCCceeEEecCCCCCCCCc
Q 009719 441 VSGIESLIKNPGSN--KNSCSLVDLMVEMDRMLRPEGTVVVRD-----SPEVIDKVSRIANTVRWTAAVHDKEPGSNGRE 513 (527)
Q Consensus 441 a~~~fs~~~~~~~~--~~rC~~~~illEmDRILRP~G~~iird-----~~~~~~~i~~i~~~l~W~~~~~~~e~~~~~~e 513 (527)
++........+..+ ..-...+.+|-|+=|+|+|||.+++-. -.+.+..+++....... ..+.-.-....|
T Consensus 123 S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~~~~~l~~l~~~f~~v~~---~Kp~ssr~~s~e 199 (209)
T PRK11188 123 SDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSLFTKVKV---RKPDSSRARSRE 199 (209)
T ss_pred cCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcCHHHHHHHHHhCceEEEE---ECCccccccCce
Confidence 86432211000000 000012568899999999999999942 23445555444444433 223333344578
Q ss_pred eEEEEEe
Q 009719 514 KILVATK 520 (527)
Q Consensus 514 kiLi~~K 520 (527)
..+||..
T Consensus 200 ~~~~~~~ 206 (209)
T PRK11188 200 VYIVATG 206 (209)
T ss_pred eEEEeec
Confidence 8888863
No 152
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=96.44 E-value=0.0075 Score=57.15 Aligned_cols=84 Identities=13% Similarity=0.030 Sum_probs=52.8
Q ss_pred cChHHHHHHHHHc----CCC-cEEeeccccCCCCCCCcccEEEecCcccccccChHHHHHHHhhcccCCcEEEEecCCCC
Q 009719 164 DSHKAQIQFALER----GIP-AFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPVQ 238 (527)
Q Consensus 164 D~seaqvq~A~eR----g~p-a~~~v~dae~LPFpD~SFDlV~cs~~l~hw~d~~~~aL~Ei~RVLRPGG~lviS~pp~~ 238 (527)
|.++.+++.|+++ ++. ..+..+++. .+++ ++||+|++.....++ ...+.++.|+|||||++++....
T Consensus 62 D~s~~~~~~a~~n~~~~~~~~i~~~~~d~~-~~~~-~~~D~v~~~~~~~~~----~~~l~~~~~~Lk~gG~lv~~~~~-- 133 (187)
T PRK08287 62 ERNPDALRLIKENRQRFGCGNIDIIPGEAP-IELP-GKADAIFIGGSGGNL----TAIIDWSLAHLHPGGRLVLTFIL-- 133 (187)
T ss_pred ECCHHHHHHHHHHHHHhCCCCeEEEecCch-hhcC-cCCCEEEECCCccCH----HHHHHHHHHhcCCCeEEEEEEec--
Confidence 6667777777643 332 344445552 3454 689999998654332 23899999999999999997531
Q ss_pred CCCchhHHHHHHHHHHhcceE
Q 009719 239 WPKQDKEWADLQAVARALCYE 259 (527)
Q Consensus 239 ~~~~~~~w~~i~~l~~~mcW~ 259 (527)
......+.++.++..++
T Consensus 134 ----~~~~~~~~~~l~~~g~~ 150 (187)
T PRK08287 134 ----LENLHSALAHLEKCGVS 150 (187)
T ss_pred ----HhhHHHHHHHHHHCCCC
Confidence 11223444555555554
No 153
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=96.44 E-value=0.004 Score=65.53 Aligned_cols=74 Identities=30% Similarity=0.381 Sum_probs=52.4
Q ss_pred cCcChHHHHHHHHHcC---------------CCcEEeecccc------CCCCCCCcccEEEecCcccccccChH---HHH
Q 009719 162 PRDSHKAQIQFALERG---------------IPAFVAMLGTR------RLPFPAFSFDIVHCSRCLIPFTAYNA---TYL 217 (527)
Q Consensus 162 p~D~seaqvq~A~eRg---------------~pa~~~v~dae------~LPFpD~SFDlV~cs~~l~hw~d~~~---~aL 217 (527)
..|++..-|+.|++|- ..+.+..+|.. .++.+...||+|-|..++|+--.... .+|
T Consensus 90 g~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l 169 (331)
T PF03291_consen 90 GIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPPRSRKFDVVSCQFALHYAFESEEKARQFL 169 (331)
T ss_dssp EEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHH
T ss_pred EEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccccCCCcceeehHHHHHHhcCCHHHHHHHH
Confidence 3467777788887764 23455666542 23444569999999999987666553 389
Q ss_pred HHHhhcccCCcEEEEecC
Q 009719 218 IEVDRLLRPGGYLVISGP 235 (527)
Q Consensus 218 ~Ei~RVLRPGG~lviS~p 235 (527)
.-+...|||||+|+.++|
T Consensus 170 ~Nvs~~Lk~GG~FIgT~~ 187 (331)
T PF03291_consen 170 KNVSSLLKPGGYFIGTTP 187 (331)
T ss_dssp HHHHHTEEEEEEEEEEEE
T ss_pred HHHHHhcCCCCEEEEEec
Confidence 999999999999999998
No 154
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=96.42 E-value=0.0022 Score=69.44 Aligned_cols=77 Identities=21% Similarity=0.233 Sum_probs=52.2
Q ss_pred CcChHHHHHHHHHc----CCC-cEEeeccccCCCCCCCcccEEEe----cCc--c-----cccccC----------hHHH
Q 009719 163 RDSHKAQIQFALER----GIP-AFVAMLGTRRLPFPAFSFDIVHC----SRC--L-----IPFTAY----------NATY 216 (527)
Q Consensus 163 ~D~seaqvq~A~eR----g~p-a~~~v~dae~LPFpD~SFDlV~c----s~~--l-----~hw~d~----------~~~a 216 (527)
.|.++.+++.++++ |+. +.+..+|+..++ ++++||+|++ +-. + ++|... ...+
T Consensus 281 vD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~-~~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~i 359 (445)
T PRK14904 281 VDRYPQKLEKIRSHASALGITIIETIEGDARSFS-PEEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAEL 359 (445)
T ss_pred EECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc-cCCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHH
Confidence 37778888777643 554 456677887775 6789999994 221 1 112211 2248
Q ss_pred HHHHhhcccCCcEEEEecCCCCCC
Q 009719 217 LIEVDRLLRPGGYLVISGPPVQWP 240 (527)
Q Consensus 217 L~Ei~RVLRPGG~lviS~pp~~~~ 240 (527)
|.++.++|||||++++++-.....
T Consensus 360 L~~a~~~lkpgG~lvystcs~~~~ 383 (445)
T PRK14904 360 LDHAASLLKPGGVLVYATCSIEPE 383 (445)
T ss_pred HHHHHHhcCCCcEEEEEeCCCChh
Confidence 999999999999999999755443
No 155
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=96.39 E-value=0.0019 Score=61.96 Aligned_cols=124 Identities=9% Similarity=0.112 Sum_probs=67.2
Q ss_pred eeeEeecCCCccchhhhccCC--CeeEEEecCCCCCCchhH----hhhccccccccccCCCC--C--CCC-Cccchhhhc
Q 009719 374 IRNIMDMNAFFGGFAAALTSD--PVWVMNVVPARKSSTLSV----IYDRGLIGVYHDWCEPF--S--TYP-RTYDLIHVS 442 (527)
Q Consensus 374 iRnvmDm~ag~GgFaAaL~~~--~VwvMnvvp~~~~ntl~v----i~eRGLiG~~hdwce~f--s--tYP-rtyDLiHa~ 442 (527)
=+.|||+|||.|.|+.+|..+ ..-+..|-... .-+.. +-..|+-.+..--+... . .+| .++|.|+..
T Consensus 17 ~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~--~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~ 94 (194)
T TIGR00091 17 APLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHT--PIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLN 94 (194)
T ss_pred CceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeH--HHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEE
Confidence 357999999999999888654 22222222221 11211 22334411111111111 1 145 488988765
Q ss_pred CccccccCCCCCCCCCcccccceeecccccCCcEEEEe-CCHHHHHHHHHHH-hcCCcee
Q 009719 443 GIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR-DSPEVIDKVSRIA-NTVRWTA 500 (527)
Q Consensus 443 ~~fs~~~~~~~~~~rC~~~~illEmDRILRP~G~~iir-d~~~~~~~i~~i~-~~l~W~~ 500 (527)
.- ..|......+.|.....+|-|+-|+|+|||.+++. |..+....+.+.+ ..-+|+.
T Consensus 95 ~p-dpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~~~~~~f~~ 153 (194)
T TIGR00091 95 FP-DPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVLSENDLFEN 153 (194)
T ss_pred CC-CcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhCCCeEe
Confidence 21 22321111234666678899999999999999887 5555566554443 3333554
No 156
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=96.35 E-value=0.001 Score=66.98 Aligned_cols=112 Identities=25% Similarity=0.330 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHHhhhccCCCCeeeEeecCCCccchhhhccCCCeeEEEecCCCCC-CchhHhhhccc-cccc-----cc
Q 009719 352 RRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGL-IGVY-----HD 424 (527)
Q Consensus 352 ~~W~~~v~~Y~~~l~~~i~~~~iRnvmDm~ag~GgFaAaL~~~~VwvMnvvp~~~~-ntl~vi~eRGL-iG~~-----hd 424 (527)
..|++.+ .+.+. +. .=-+|||.+||+|=+|..+.+.-= .-.|+-.|-. +-|.+.-+|-- .|.. +-
T Consensus 37 ~~Wr~~~---i~~~~--~~--~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~ 108 (238)
T COG2226 37 RLWRRAL---ISLLG--IK--PGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQNVEFVVG 108 (238)
T ss_pred HHHHHHH---HHhhC--CC--CCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCccceEEEEe
Confidence 6677655 22222 22 235799999999999998855431 3344444433 66666666654 1211 11
Q ss_pred cCCCCCCCC-CccchhhhcCccccccCCCCCCCCCcccccceeecccccCCcEEEEeC
Q 009719 425 WCEPFSTYP-RTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 481 (527)
Q Consensus 425 wce~fstYP-rtyDLiHa~~~fs~~~~~~~~~~rC~~~~illEmDRILRP~G~~iird 481 (527)
==|.++ || .|||++=++..+-... ++...|=||-|||+|||-+++-+
T Consensus 109 dAe~LP-f~D~sFD~vt~~fglrnv~---------d~~~aL~E~~RVlKpgG~~~vle 156 (238)
T COG2226 109 DAENLP-FPDNSFDAVTISFGLRNVT---------DIDKALKEMYRVLKPGGRLLVLE 156 (238)
T ss_pred chhhCC-CCCCccCEEEeeehhhcCC---------CHHHHHHHHHHhhcCCeEEEEEE
Confidence 124456 55 9999998886665442 46789999999999999887765
No 157
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=96.34 E-value=0.0054 Score=61.06 Aligned_cols=137 Identities=16% Similarity=0.260 Sum_probs=74.2
Q ss_pred cccchhhHHHHHHHHHHHHHhhh-----------cc-CCCCeeeEeecCCCccchhhhccCC-CeeEEEecCCCCCCchh
Q 009719 345 DVFEADSRRWRRRVAYYKNTLNV-----------KL-GTPAIRNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKSSTLS 411 (527)
Q Consensus 345 ~~f~~d~~~W~~~v~~Y~~~l~~-----------~i-~~~~iRnvmDm~ag~GgFaAaL~~~-~VwvMnvvp~~~~ntl~ 411 (527)
+.|++|-+.|..-=..|..++.. .| +...--.|-|||||-|-.|+++.+. .|.-...|..+..=|.
T Consensus 32 ~lf~~dP~~F~~YH~Gfr~Qv~~WP~nPvd~iI~~l~~~~~~~viaD~GCGdA~la~~~~~~~~V~SfDLva~n~~Vta- 110 (219)
T PF05148_consen 32 KLFQEDPELFDIYHEGFRQQVKKWPVNPVDVIIEWLKKRPKSLVIADFGCGDAKLAKAVPNKHKVHSFDLVAPNPRVTA- 110 (219)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHCTSSS-HHHHHHHHHCTS-TTS-EEEES-TT-HHHHH--S---EEEEESS-SSTTEEE-
T ss_pred HHHHhCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHhcCCCEEEEECCCchHHHHHhcccCceEEEeeccCCCCCEEE-
Confidence 55777777776544445544321 11 2233458999999999999987533 4666666655432100
Q ss_pred HhhhccccccccccCCC--CCCCCCccchhhhcCccccccCCCCCCCCCcccccceeecccccCCcEEEEeCCHHH---H
Q 009719 412 VIYDRGLIGVYHDWCEP--FSTYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSPEV---I 486 (527)
Q Consensus 412 vi~eRGLiG~~hdwce~--fstYPrtyDLiHa~~~fs~~~~~~~~~~rC~~~~illEmDRILRP~G~~iird~~~~---~ 486 (527)
|.- .|-=.-+.|++=+ |+|+- +-+..++|.|-.|||||||.++|-+-.+- +
T Consensus 111 --------------cdia~vPL~~~svDv~Vf--cLSLM--------GTn~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~ 166 (219)
T PF05148_consen 111 --------------CDIANVPLEDESVDVAVF--CLSLM--------GTNWPDFIREANRVLKPGGILKIAEVKSRFENV 166 (219)
T ss_dssp --------------S-TTS-S--TT-EEEEEE--ES-----------SS-HHHHHHHHHHHEEEEEEEEEEEEGGG-S-H
T ss_pred --------------ecCccCcCCCCceeEEEE--Ehhhh--------CCCcHHHHHHHHheeccCcEEEEEEecccCcCH
Confidence 111 1111267777543 56643 34568999999999999999999875443 3
Q ss_pred HHHHHHHhcCCceeEEecCC
Q 009719 487 DKVSRIANTVRWTAAVHDKE 506 (527)
Q Consensus 487 ~~i~~i~~~l~W~~~~~~~e 506 (527)
+..-+..+++-.+....|..
T Consensus 167 ~~F~~~~~~~GF~~~~~d~~ 186 (219)
T PF05148_consen 167 KQFIKALKKLGFKLKSKDES 186 (219)
T ss_dssp HHHHHHHHCTTEEEEEEE--
T ss_pred HHHHHHHHHCCCeEEecccC
Confidence 44445577888887776543
No 158
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=96.33 E-value=0.0012 Score=65.98 Aligned_cols=93 Identities=16% Similarity=0.188 Sum_probs=53.7
Q ss_pred eeEeecCCCccchhhhc---cCCC--eeEEEecCCCCCCchhHhhhc----cccc--c-ccccCCCCCCCCCccchhhhc
Q 009719 375 RNIMDMNAFFGGFAAAL---TSDP--VWVMNVVPARKSSTLSVIYDR----GLIG--V-YHDWCEPFSTYPRTYDLIHVS 442 (527)
Q Consensus 375 RnvmDm~ag~GgFaAaL---~~~~--VwvMnvvp~~~~ntl~vi~eR----GLiG--~-~hdwce~fstYPrtyDLiHa~ 442 (527)
.+|||+|||.|..+..+ .... |..+-+- ++.+..+-++ |+-. . ..|. +.++.-..+||+|++.
T Consensus 79 ~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s----~~~l~~A~~~~~~~g~~~v~~~~~d~-~~l~~~~~~fD~Vi~~ 153 (272)
T PRK11873 79 ETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMT----PEMLAKARANARKAGYTNVEFRLGEI-EALPVADNSVDVIISN 153 (272)
T ss_pred CEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCC----HHHHHHHHHHHHHcCCCCEEEEEcch-hhCCCCCCceeEEEEc
Confidence 49999999998744322 2222 3333221 1334443332 3210 0 0122 2222123799999988
Q ss_pred CccccccCCCCCCCCCcccccceeecccccCCcEEEEeC
Q 009719 443 GIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 481 (527)
Q Consensus 443 ~~fs~~~~~~~~~~rC~~~~illEmDRILRP~G~~iird 481 (527)
.++.... +...++-|+=|+|||||.+++.|
T Consensus 154 ~v~~~~~---------d~~~~l~~~~r~LkpGG~l~i~~ 183 (272)
T PRK11873 154 CVINLSP---------DKERVFKEAFRVLKPGGRFAISD 183 (272)
T ss_pred CcccCCC---------CHHHHHHHHHHHcCCCcEEEEEE
Confidence 7765432 23578999999999999999974
No 159
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=96.32 E-value=0.0036 Score=64.70 Aligned_cols=53 Identities=23% Similarity=0.352 Sum_probs=41.6
Q ss_pred eeccccCCCCC-CCcccEEEecCcccccccCh-HHHHHHHhhcccCCcEEEEecC
Q 009719 183 AMLGTRRLPFP-AFSFDIVHCSRCLIPFTAYN-ATYLIEVDRLLRPGGYLVISGP 235 (527)
Q Consensus 183 ~v~dae~LPFp-D~SFDlV~cs~~l~hw~d~~-~~aL~Ei~RVLRPGG~lviS~p 235 (527)
.+.+...-||+ .+.||+|+|..+++|+.... ..++..+.+.|+|||+|++...
T Consensus 209 ~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~s 263 (287)
T PRK10611 209 QQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGHS 263 (287)
T ss_pred EcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeCc
Confidence 34454444554 68999999999999996654 3599999999999999988664
No 160
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=96.23 E-value=0.0065 Score=62.79 Aligned_cols=85 Identities=18% Similarity=0.261 Sum_probs=58.9
Q ss_pred hccccccccC-CeeEEeeccCcChHHHHHHHHHc----CCC--cEEeeccccCCCCCCCcccEEEecCcccccccCh-HH
Q 009719 144 ASFGGSMLSE-NILTLSFAPRDSHKAQIQFALER----GIP--AFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYN-AT 215 (527)
Q Consensus 144 gsfga~Ll~r-~V~~msiAp~D~seaqvq~A~eR----g~p--a~~~v~dae~LPFpD~SFDlV~cs~~l~hw~d~~-~~ 215 (527)
|+.+-|+..+ ||.++.+ ++|++|.+.|++| |.. +.+.. +..+...+.||-|++..+++|+.... ..
T Consensus 84 G~l~~~aA~~y~v~V~Gv---TlS~~Q~~~~~~r~~~~gl~~~v~v~l---~d~rd~~e~fDrIvSvgmfEhvg~~~~~~ 157 (283)
T COG2230 84 GGLAIYAAEEYGVTVVGV---TLSEEQLAYAEKRIAARGLEDNVEVRL---QDYRDFEEPFDRIVSVGMFEHVGKENYDD 157 (283)
T ss_pred hHHHHHHHHHcCCEEEEe---eCCHHHHHHHHHHHHHcCCCcccEEEe---ccccccccccceeeehhhHHHhCcccHHH
Confidence 3444444444 6766666 5688998888764 655 33332 33444445599999999999997632 34
Q ss_pred HHHHHhhcccCCcEEEEec
Q 009719 216 YLIEVDRLLRPGGYLVISG 234 (527)
Q Consensus 216 aL~Ei~RVLRPGG~lviS~ 234 (527)
++.-++++|+|||.+++-+
T Consensus 158 ff~~~~~~L~~~G~~llh~ 176 (283)
T COG2230 158 FFKKVYALLKPGGRMLLHS 176 (283)
T ss_pred HHHHHHhhcCCCceEEEEE
Confidence 9999999999999999855
No 161
>PRK06202 hypothetical protein; Provisional
Probab=96.20 E-value=0.0043 Score=60.77 Aligned_cols=103 Identities=12% Similarity=0.148 Sum_probs=61.7
Q ss_pred CCCCeeeEeecCCCccchhhhccCC---CeeEEEecCCCCC-CchhHhhhccc-cc--cccccCCCCCCCCCccchhhhc
Q 009719 370 GTPAIRNIMDMNAFFGGFAAALTSD---PVWVMNVVPARKS-STLSVIYDRGL-IG--VYHDWCEPFSTYPRTYDLIHVS 442 (527)
Q Consensus 370 ~~~~iRnvmDm~ag~GgFaAaL~~~---~VwvMnvvp~~~~-ntl~vi~eRGL-iG--~~hdwce~fstYPrtyDLiHa~ 442 (527)
....-.+|+|+|||.|.++.+|.+. .-...+|+-+|-. +.+..+.++.- -+ ...-=++.++.-+.+||+|-++
T Consensus 57 ~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~ 136 (232)
T PRK06202 57 SADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSN 136 (232)
T ss_pred CCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEEC
Confidence 3344568999999999998777431 0111234445543 55555555421 01 1111123344435899999999
Q ss_pred CccccccCCCCCCCCCcccccceeecccccCCcEEEEeC
Q 009719 443 GIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 481 (527)
Q Consensus 443 ~~fs~~~~~~~~~~rC~~~~illEmDRILRP~G~~iird 481 (527)
.+|.+.. +. .+..+|-||-|++| |.+++.|
T Consensus 137 ~~lhh~~------d~-~~~~~l~~~~r~~~--~~~~i~d 166 (232)
T PRK06202 137 HFLHHLD------DA-EVVRLLADSAALAR--RLVLHND 166 (232)
T ss_pred CeeecCC------hH-HHHHHHHHHHHhcC--eeEEEec
Confidence 8887653 11 23468899999999 6666665
No 162
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=96.19 E-value=0.012 Score=56.46 Aligned_cols=68 Identities=15% Similarity=0.147 Sum_probs=46.4
Q ss_pred cChHHHHHHHHHc----CC--CcEEeeccccC-CCCCCCcccEEEecCcccccccChHHHHHHHhhcccCCcEEEEecC
Q 009719 164 DSHKAQIQFALER----GI--PAFVAMLGTRR-LPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 235 (527)
Q Consensus 164 D~seaqvq~A~eR----g~--pa~~~v~dae~-LPFpD~SFDlV~cs~~l~hw~d~~~~aL~Ei~RVLRPGG~lviS~p 235 (527)
|.++.+++.|+++ ++ .+.+..+++.. ++..++.||.|++... ..+ ...+|.++.|+|||||++++...
T Consensus 72 D~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~~~---~~~-~~~~l~~~~~~LkpgG~lv~~~~ 146 (198)
T PRK00377 72 DKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIGGG---SEK-LKEIISASWEIIKKGGRIVIDAI 146 (198)
T ss_pred ECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEECCC---ccc-HHHHHHHHHHHcCCCcEEEEEee
Confidence 6677777777644 42 23455566654 4555678999997532 222 23499999999999999998665
No 163
>PRK04266 fibrillarin; Provisional
Probab=96.15 E-value=0.0073 Score=60.15 Aligned_cols=94 Identities=15% Similarity=0.233 Sum_probs=50.5
Q ss_pred cCCCCeeeEeecCCCccchhhhccCC----CeeEEEecCCCCCCchh----Hhhhc-cccccccccCCCCC--CCCCccc
Q 009719 369 LGTPAIRNIMDMNAFFGGFAAALTSD----PVWVMNVVPARKSSTLS----VIYDR-GLIGVYHDWCEPFS--TYPRTYD 437 (527)
Q Consensus 369 i~~~~iRnvmDm~ag~GgFaAaL~~~----~VwvMnvvp~~~~ntl~----vi~eR-GLiG~~hdwce~fs--tYPrtyD 437 (527)
++.+. .|||+|||.|++...|.+. .|+.+-+-| .-|. .+-+| ++.-+..|-.++.. ..+.+||
T Consensus 70 i~~g~--~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~----~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D 143 (226)
T PRK04266 70 IKKGS--KVLYLGAASGTTVSHVSDIVEEGVVYAVEFAP----RPMRELLEVAEERKNIIPILADARKPERYAHVVEKVD 143 (226)
T ss_pred CCCCC--EEEEEccCCCHHHHHHHHhcCCCeEEEEECCH----HHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCC
Confidence 55553 6999999999999888654 244443322 2222 22222 23333334333211 1234577
Q ss_pred hhhhcCccccccCCCCCCCCCcccccceeecccccCCcEEEE
Q 009719 438 LIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVV 479 (527)
Q Consensus 438 LiHa~~~fs~~~~~~~~~~rC~~~~illEmDRILRP~G~~ii 479 (527)
.|=++ .. ..+ ....+|-|+-|+|+|||.++|
T Consensus 144 ~i~~d-----~~----~p~--~~~~~L~~~~r~LKpGG~lvI 174 (226)
T PRK04266 144 VIYQD-----VA----QPN--QAEIAIDNAEFFLKDGGYLLL 174 (226)
T ss_pred EEEEC-----CC----Chh--HHHHHHHHHHHhcCCCcEEEE
Confidence 65211 10 000 012246699999999999999
No 164
>PRK14967 putative methyltransferase; Provisional
Probab=96.07 E-value=0.0043 Score=60.65 Aligned_cols=124 Identities=15% Similarity=0.165 Sum_probs=64.1
Q ss_pred eeEeecCCCccchhhhccCCCeeEEEecCCCCC-CchhHhhh----ccc--cccccccCCCCCCCCCccchhhhcCcccc
Q 009719 375 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYD----RGL--IGVYHDWCEPFSTYPRTYDLIHVSGIESL 447 (527)
Q Consensus 375 RnvmDm~ag~GgFaAaL~~~~VwvMnvvp~~~~-ntl~vi~e----RGL--iG~~hdwce~fstYPrtyDLiHa~~~fs~ 447 (527)
-.|||+|||.|.++..+...+.- +|+-+|-. ..+..+-+ .|+ --+..|+.+.+. ...||+|.++--|..
T Consensus 38 ~~vLDlGcG~G~~~~~la~~~~~--~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~--~~~fD~Vi~npPy~~ 113 (223)
T PRK14967 38 RRVLDLCTGSGALAVAAAAAGAG--SVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVE--FRPFDVVVSNPPYVP 113 (223)
T ss_pred CeEEEecCCHHHHHHHHHHcCCC--eEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhcc--CCCeeEEEECCCCCC
Confidence 47999999999998877654321 22222222 33332222 233 112234444332 368999998744331
Q ss_pred ccCCC-----------CCC-CCCcccccceeecccccCCcEEEEe-CCHHHHHHHHHHHhcCCceeEE
Q 009719 448 IKNPG-----------SNK-NSCSLVDLMVEMDRMLRPEGTVVVR-DSPEVIDKVSRIANTVRWTAAV 502 (527)
Q Consensus 448 ~~~~~-----------~~~-~rC~~~~illEmDRILRP~G~~iir-d~~~~~~~i~~i~~~l~W~~~~ 502 (527)
-.... .+. ....+..++-++-|+|+|||.+++- .+.....++.+++++-.|+...
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~~ 181 (223)
T PRK14967 114 APPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELSGVERTLTRLSEAGLDAEV 181 (223)
T ss_pred CCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecccCHHHHHHHHHHCCCCeEE
Confidence 10000 000 1122456777899999999999983 2222233444444444554433
No 165
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=96.07 E-value=0.014 Score=63.24 Aligned_cols=78 Identities=21% Similarity=0.270 Sum_probs=53.5
Q ss_pred CcChHHHHHHHHHc----CCC-cEEeeccccCCC-CCCCcccEEEecC-c--cccccc------------------ChHH
Q 009719 163 RDSHKAQIQFALER----GIP-AFVAMLGTRRLP-FPAFSFDIVHCSR-C--LIPFTA------------------YNAT 215 (527)
Q Consensus 163 ~D~seaqvq~A~eR----g~p-a~~~v~dae~LP-FpD~SFDlV~cs~-~--l~hw~d------------------~~~~ 215 (527)
.|.++.+++.++++ |+. +.+.++|+..++ +.+++||.|++.- | +-.+.. ....
T Consensus 268 ~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~ 347 (431)
T PRK14903 268 VDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLR 347 (431)
T ss_pred EECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHH
Confidence 37778888777644 554 456778888887 6678999998521 1 111111 1233
Q ss_pred HHHHHhhcccCCcEEEEecCCCCCC
Q 009719 216 YLIEVDRLLRPGGYLVISGPPVQWP 240 (527)
Q Consensus 216 aL~Ei~RVLRPGG~lviS~pp~~~~ 240 (527)
.|.++.+.|||||++++|+-.....
T Consensus 348 iL~~a~~~LkpGG~LvYsTCs~~~e 372 (431)
T PRK14903 348 IVSQAWKLLEKGGILLYSTCTVTKE 372 (431)
T ss_pred HHHHHHHhcCCCCEEEEEECCCChh
Confidence 7999999999999999999755544
No 166
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=96.02 E-value=0.0058 Score=63.43 Aligned_cols=128 Identities=18% Similarity=0.250 Sum_probs=69.9
Q ss_pred eeEeecCCCccch--hhhcc-CCCeeEEEecCCCCCCchhHhhhcccccccc-ccCCCCCCCCCccchhhhcCccccccC
Q 009719 375 RNIMDMNAFFGGF--AAALT-SDPVWVMNVVPARKSSTLSVIYDRGLIGVYH-DWCEPFSTYPRTYDLIHVSGIESLIKN 450 (527)
Q Consensus 375 RnvmDm~ag~GgF--aAaL~-~~~VwvMnvvp~~~~ntl~vi~eRGLiG~~h-dwce~fstYPrtyDLiHa~~~fs~~~~ 450 (527)
..|||+|||+|-. ||++. -..|.-.-+=|..-.++..-+-.-|+-.-.. .-.+.+.. ..||||=|+=+....
T Consensus 163 ~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~~~~~~~--~~~dlvvANI~~~vL-- 238 (295)
T PF06325_consen 163 KRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVSLSEDLVE--GKFDLVVANILADVL-- 238 (295)
T ss_dssp SEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEESCTSCTCC--S-EEEEEEES-HHHH--
T ss_pred CEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEEeccccc--ccCCEEEECCCHHHH--
Confidence 4999999999954 44443 3346555544442223333344444422110 01122222 789999886444322
Q ss_pred CCCCCCCCcccccceeecccccCCcEEEEeCCH-HHHHHHHHHHhcCCceeEEecCCCCCCCCceEEEEEec
Q 009719 451 PGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP-EVIDKVSRIANTVRWTAAVHDKEPGSNGREKILVATKS 521 (527)
Q Consensus 451 ~~~~~~rC~~~~illEmDRILRP~G~~iird~~-~~~~~i~~i~~~l~W~~~~~~~e~~~~~~ekiLi~~K~ 521 (527)
..++=++.+.|+|||++|++.-. +..+.|.+.++. -|++.....+ +.=--|+++|+
T Consensus 239 ----------~~l~~~~~~~l~~~G~lIlSGIl~~~~~~v~~a~~~-g~~~~~~~~~----~~W~~l~~~Kk 295 (295)
T PF06325_consen 239 ----------LELAPDIASLLKPGGYLILSGILEEQEDEVIEAYKQ-GFELVEEREE----GEWVALVFKKK 295 (295)
T ss_dssp ----------HHHHHHCHHHEEEEEEEEEEEEEGGGHHHHHHHHHT-TEEEEEEEEE----TTEEEEEEEE-
T ss_pred ----------HHHHHHHHHhhCCCCEEEEccccHHHHHHHHHHHHC-CCEEEEEEEE----CCEEEEEEEeC
Confidence 34566789999999999999732 234566666666 7776544322 22346667765
No 167
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=96.00 E-value=0.0065 Score=61.15 Aligned_cols=152 Identities=14% Similarity=0.080 Sum_probs=83.6
Q ss_pred hhhHHHHHHHHHHHHHhhhccCCCCeeeEeecCCCccchhhhccCC-CeeEEEecCCCCC-CchhHhhh----ccccccc
Q 009719 349 ADSRRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVIYD----RGLIGVY 422 (527)
Q Consensus 349 ~d~~~W~~~v~~Y~~~l~~~i~~~~iRnvmDm~ag~GgFaAaL~~~-~VwvMnvvp~~~~-ntl~vi~e----RGLiG~~ 422 (527)
.+|+..-+.+....+ + ...-.+|+|+|||.|.++-+|... +-. +|+-+|.. ..+..+-+ .|+--+-
T Consensus 68 ~~Te~Lv~~~l~~~~---~---~~~~~~vLDlg~GsG~i~l~la~~~~~~--~v~~vDis~~al~~A~~N~~~~~~~~~~ 139 (251)
T TIGR03704 68 RRTEFLVDEAAALAR---P---RSGTLVVVDLCCGSGAVGAALAAALDGI--ELHAADIDPAAVRCARRNLADAGGTVHE 139 (251)
T ss_pred ccHHHHHHHHHHhhc---c---cCCCCEEEEecCchHHHHHHHHHhCCCC--EEEEEECCHHHHHHHHHHHHHcCCEEEE
Confidence 466666555543221 1 112237999999999998877532 211 12223322 33332221 1321122
Q ss_pred cccCCCCCC-CCCccchhhhcCcccccc-----CCCC--CCCCCc----------ccccceeecccccCCcEEEEeCCHH
Q 009719 423 HDWCEPFST-YPRTYDLIHVSGIESLIK-----NPGS--NKNSCS----------LVDLMVEMDRMLRPEGTVVVRDSPE 484 (527)
Q Consensus 423 hdwce~fst-YPrtyDLiHa~~~fs~~~-----~~~~--~~~rC~----------~~~illEmDRILRP~G~~iird~~~ 484 (527)
.|+.+.++. ....||+|=++--+.... .|.. ...+.. +..++-...++|+|||.+++--..+
T Consensus 140 ~D~~~~l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~ 219 (251)
T TIGR03704 140 GDLYDALPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSER 219 (251)
T ss_pred eechhhcchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcc
Confidence 344443321 234688887664333110 0000 000111 2367777889999999999876666
Q ss_pred HHHHHHHHHhcCCceeEEecCCCC
Q 009719 485 VIDKVSRIANTVRWTAAVHDKEPG 508 (527)
Q Consensus 485 ~~~~i~~i~~~l~W~~~~~~~e~~ 508 (527)
-..++..++++..|+..+..|++.
T Consensus 220 ~~~~v~~~l~~~g~~~~~~~~~~~ 243 (251)
T TIGR03704 220 QAPLAVEAFARAGLIARVASSEEL 243 (251)
T ss_pred hHHHHHHHHHHCCCCceeeEcccc
Confidence 677888888888898888877765
No 168
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=95.95 E-value=0.0054 Score=61.93 Aligned_cols=78 Identities=18% Similarity=0.232 Sum_probs=52.8
Q ss_pred CcChHHHHHHHHHc----CCC-cEEeeccccCCCCCCCcccEEEe----cC--cccc-------ccc--------ChHHH
Q 009719 163 RDSHKAQIQFALER----GIP-AFVAMLGTRRLPFPAFSFDIVHC----SR--CLIP-------FTA--------YNATY 216 (527)
Q Consensus 163 ~D~seaqvq~A~eR----g~p-a~~~v~dae~LPFpD~SFDlV~c----s~--~l~h-------w~d--------~~~~a 216 (527)
.|.++.+++.++++ |+. +.+...|+..++...++||.|++ +. ++.+ |.. ....+
T Consensus 102 ~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~i 181 (264)
T TIGR00446 102 NEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKEL 181 (264)
T ss_pred EcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHH
Confidence 37777887777543 543 45666788777777778999985 31 1111 111 12248
Q ss_pred HHHHhhcccCCcEEEEecCCCCCC
Q 009719 217 LIEVDRLLRPGGYLVISGPPVQWP 240 (527)
Q Consensus 217 L~Ei~RVLRPGG~lviS~pp~~~~ 240 (527)
|.++.+.|||||++++|+-..+..
T Consensus 182 L~~a~~~lkpgG~lvYstcs~~~~ 205 (264)
T TIGR00446 182 IDSAFDALKPGGVLVYSTCSLEPE 205 (264)
T ss_pred HHHHHHhcCCCCEEEEEeCCCChH
Confidence 999999999999999998755543
No 169
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=95.94 E-value=0.0026 Score=62.18 Aligned_cols=87 Identities=18% Similarity=0.175 Sum_probs=48.4
Q ss_pred eeEeecCCCccchhhhccCC-----CeeEEEecCCCCCCchhHhh----hccccccccccCCCCCCCC--CccchhhhcC
Q 009719 375 RNIMDMNAFFGGFAAALTSD-----PVWVMNVVPARKSSTLSVIY----DRGLIGVYHDWCEPFSTYP--RTYDLIHVSG 443 (527)
Q Consensus 375 RnvmDm~ag~GgFaAaL~~~-----~VwvMnvvp~~~~ntl~vi~----eRGLiG~~hdwce~fstYP--rtyDLiHa~~ 443 (527)
..|+|+|||+|.+++.|... .|..+-+.|. -+.++- .-|+-.+---....+..++ ..||+|++..
T Consensus 78 ~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~----~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~~fD~I~~~~ 153 (212)
T PRK13942 78 MKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPE----LAEKAKKTLKKLGYDNVEVIVGDGTLGYEENAPYDRIYVTA 153 (212)
T ss_pred CEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHH----HHHHHHHHHHHcCCCCeEEEECCcccCCCcCCCcCEEEECC
Confidence 58999999999999776432 3444433322 122111 1232111111122233333 6899998864
Q ss_pred ccccccCCCCCCCCCcccccceeecccccCCcEEEEe
Q 009719 444 IESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 480 (527)
Q Consensus 444 ~fs~~~~~~~~~~rC~~~~illEmDRILRP~G~~iir 480 (527)
.+. .+.-++-+.|+|||.+++-
T Consensus 154 ~~~---------------~~~~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 154 AGP---------------DIPKPLIEQLKDGGIMVIP 175 (212)
T ss_pred Ccc---------------cchHHHHHhhCCCcEEEEE
Confidence 332 2333556689999999884
No 170
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=95.91 E-value=0.0024 Score=67.32 Aligned_cols=130 Identities=18% Similarity=0.167 Sum_probs=71.7
Q ss_pred eEeecCCCccchhhhccCC-C-eeEEEecCCCCC-Cchh----HhhhccccccccccCCCCCCCCCccchhhhcCccccc
Q 009719 376 NIMDMNAFFGGFAAALTSD-P-VWVMNVVPARKS-STLS----VIYDRGLIGVYHDWCEPFSTYPRTYDLIHVSGIESLI 448 (527)
Q Consensus 376 nvmDm~ag~GgFaAaL~~~-~-VwvMnvvp~~~~-ntl~----vi~eRGLiG~~hdwce~fstYPrtyDLiHa~~~fs~~ 448 (527)
.|+|+|||.|.++++|.+. | .-|.- .|.. .-|. -+-+.|+-+..+ +...++..+..||+|-++-.|-..
T Consensus 199 ~VLDlGCG~G~ls~~la~~~p~~~v~~---vDis~~Al~~A~~nl~~n~l~~~~~-~~D~~~~~~~~fDlIvsNPPFH~g 274 (342)
T PRK09489 199 KVLDVGCGAGVLSAVLARHSPKIRLTL---SDVSAAALESSRATLAANGLEGEVF-ASNVFSDIKGRFDMIISNPPFHDG 274 (342)
T ss_pred eEEEeccCcCHHHHHHHHhCCCCEEEE---EECCHHHHHHHHHHHHHcCCCCEEE-EcccccccCCCccEEEECCCccCC
Confidence 5999999999999988664 3 22221 2211 1111 111233333222 233344346889999998766421
Q ss_pred cCCCCCCCCCcccccceeecccccCCcEEEEeCC--HHHHHHHHHHHhcCCceeEEecCCCCCCCCceEEEEEec
Q 009719 449 KNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS--PEVIDKVSRIANTVRWTAAVHDKEPGSNGREKILVATKS 521 (527)
Q Consensus 449 ~~~~~~~~rC~~~~illEmDRILRP~G~~iird~--~~~~~~i~~i~~~l~W~~~~~~~e~~~~~~ekiLi~~K~ 521 (527)
. ..+.-..+.++-++-|.|+|||.++|-.+ ..+-..+++..... ++... .++=||+-|+|.
T Consensus 275 ~----~~~~~~~~~~i~~a~~~LkpgG~L~iVan~~l~y~~~l~~~Fg~~--~~la~------~~~f~v~~a~~~ 337 (342)
T PRK09489 275 I----QTSLDAAQTLIRGAVRHLNSGGELRIVANAFLPYPDLLDETFGSH--EVLAQ------TGRFKVYRAIMT 337 (342)
T ss_pred c----cccHHHHHHHHHHHHHhcCcCCEEEEEEeCCCChHHHHHHHcCCe--EEEEe------CCCEEEEEEEcc
Confidence 1 11112346788999999999999987543 22333444444432 22221 124577777764
No 171
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=95.85 E-value=0.0033 Score=50.15 Aligned_cols=95 Identities=24% Similarity=0.270 Sum_probs=54.5
Q ss_pred eEeecCCCccchhhhccCCCeeEEEecCCCCC-CchhHhh---hccc---cccc-cccCCCCCCCCCccchhhhcCcccc
Q 009719 376 NIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIY---DRGL---IGVY-HDWCEPFSTYPRTYDLIHVSGIESL 447 (527)
Q Consensus 376 nvmDm~ag~GgFaAaL~~~~VwvMnvvp~~~~-ntl~vi~---eRGL---iG~~-hdwce~fstYPrtyDLiHa~~~fs~ 447 (527)
+++|+|||.|+++..+...+.. ++.-.+.. +.+..+- +.+. +-.+ .|+.+.-..-+..||++.+...+..
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~ 78 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGA--RVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHH 78 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCC--EEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceee
Confidence 4899999999999888763221 22222222 2112111 1111 1111 1222211113478999999888764
Q ss_pred ccCCCCCCCCCcccccceeecccccCCcEEEEe
Q 009719 448 IKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 480 (527)
Q Consensus 448 ~~~~~~~~~rC~~~~illEmDRILRP~G~~iir 480 (527)
+. =....++-.+.+.|||||++++.
T Consensus 79 ~~--------~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 79 LV--------EDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred hh--------hHHHHHHHHHHHHcCCCCEEEEE
Confidence 11 02356788889999999999986
No 172
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=95.84 E-value=0.0061 Score=59.28 Aligned_cols=90 Identities=18% Similarity=0.207 Sum_probs=50.1
Q ss_pred eeEeecCCCccchhhhccCC--C---eeEEEecCCCCCCchhHhhhccc--c-ccccccCCCCCCCCCccchhhhcCccc
Q 009719 375 RNIMDMNAFFGGFAAALTSD--P---VWVMNVVPARKSSTLSVIYDRGL--I-GVYHDWCEPFSTYPRTYDLIHVSGIES 446 (527)
Q Consensus 375 RnvmDm~ag~GgFaAaL~~~--~---VwvMnvvp~~~~ntl~vi~eRGL--i-G~~hdwce~fstYPrtyDLiHa~~~fs 446 (527)
..|||+|||.|.+++.|.+. + |+.+-.-|.-....-..+-+.|+ + =+..|..+.+.. ...||+|+++....
T Consensus 79 ~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~-~~~fD~Ii~~~~~~ 157 (215)
T TIGR00080 79 MKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEP-LAPYDRIYVTAAGP 157 (215)
T ss_pred CEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcc-cCCCCEEEEcCCcc
Confidence 47999999999999988543 2 44433322211111111223343 1 122233333222 25799998764332
Q ss_pred cccCCCCCCCCCcccccceeecccccCCcEEEEe
Q 009719 447 LIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 480 (527)
Q Consensus 447 ~~~~~~~~~~rC~~~~illEmDRILRP~G~~iir 480 (527)
.+.-++-+.|+|||.+|+-
T Consensus 158 ---------------~~~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 158 ---------------KIPEALIDQLKEGGILVMP 176 (215)
T ss_pred ---------------cccHHHHHhcCcCcEEEEE
Confidence 2333466889999999884
No 173
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=95.83 E-value=0.0035 Score=60.20 Aligned_cols=93 Identities=20% Similarity=0.272 Sum_probs=54.4
Q ss_pred eeEeecCCCccchhhhccC-----CCeeEEEecCCCCCCchhHhhhc----cc---cccc-cccCCCCCCCCCccchhhh
Q 009719 375 RNIMDMNAFFGGFAAALTS-----DPVWVMNVVPARKSSTLSVIYDR----GL---IGVY-HDWCEPFSTYPRTYDLIHV 441 (527)
Q Consensus 375 RnvmDm~ag~GgFaAaL~~-----~~VwvMnvvp~~~~ntl~vi~eR----GL---iG~~-hdwce~fstYPrtyDLiHa 441 (527)
..|+|+|||.|.++..+.. ..|..+-+.+ +.+..+-++ ++ +-+. .|..+ ++.=+.+||+|.+
T Consensus 53 ~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~----~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~I~~ 127 (239)
T PRK00216 53 DKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSE----GMLAVGREKLRDLGLSGNVEFVQGDAEA-LPFPDNSFDAVTI 127 (239)
T ss_pred CeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCH----HHHHHHHHhhcccccccCeEEEeccccc-CCCCCCCccEEEE
Confidence 4699999999999877643 2333332221 222222221 11 1111 12111 1211368999998
Q ss_pred cCccccccCCCCCCCCCcccccceeecccccCCcEEEEeC
Q 009719 442 SGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 481 (527)
Q Consensus 442 ~~~fs~~~~~~~~~~rC~~~~illEmDRILRP~G~~iird 481 (527)
+.++-. ..+...+|-++-++|+|||.+++-+
T Consensus 128 ~~~l~~---------~~~~~~~l~~~~~~L~~gG~li~~~ 158 (239)
T PRK00216 128 AFGLRN---------VPDIDKALREMYRVLKPGGRLVILE 158 (239)
T ss_pred eccccc---------CCCHHHHHHHHHHhccCCcEEEEEE
Confidence 766543 2345778899999999999998854
No 174
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=95.82 E-value=0.023 Score=54.89 Aligned_cols=65 Identities=18% Similarity=0.027 Sum_probs=44.7
Q ss_pred cChHHHHHHHHHc----CCC-cEEeeccccCCCCCCCcccEEEecCcccccccChHHHHHHHhhcccCCcEEEEecC
Q 009719 164 DSHKAQIQFALER----GIP-AFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 235 (527)
Q Consensus 164 D~seaqvq~A~eR----g~p-a~~~v~dae~LPFpD~SFDlV~cs~~l~hw~d~~~~aL~Ei~RVLRPGG~lviS~p 235 (527)
|.++.+++.|+++ ++. +.+..+|......+.+.||+|++..+..+ ...++.+.|+|||.+++...
T Consensus 107 d~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~~~-------~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 107 ERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPFDRILVTAAAPE-------IPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred eCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCcCEEEEccCchh-------hhHHHHHhcCCCcEEEEEEc
Confidence 5667888877654 343 45566665332223589999999876543 34567899999999998764
No 175
>PRK06922 hypothetical protein; Provisional
Probab=95.82 E-value=0.0024 Score=72.46 Aligned_cols=105 Identities=18% Similarity=0.209 Sum_probs=58.2
Q ss_pred eeEeecCCCccchhhhccCC-CeeEEEecCCCCC-CchhHhhhc----cc-cccccccCCCCCC-C-CCccchhhhcCcc
Q 009719 375 RNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVIYDR----GL-IGVYHDWCEPFST-Y-PRTYDLIHVSGIE 445 (527)
Q Consensus 375 RnvmDm~ag~GgFaAaL~~~-~VwvMnvvp~~~~-ntl~vi~eR----GL-iG~~hdwce~fst-Y-PrtyDLiHa~~~f 445 (527)
.+|+|+|||.|.++.+|... |- .+|+-.|-. +.+..+-++ |. +-+.+.=+..++. + |.+||+|.++.++
T Consensus 420 ~rVLDIGCGTG~ls~~LA~~~P~--~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vL 497 (677)
T PRK06922 420 DTIVDVGAGGGVMLDMIEEETED--KRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSIL 497 (677)
T ss_pred CEEEEeCCCCCHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHH
Confidence 48999999999998777432 11 122223322 333333222 21 1111111222332 3 4899999887655
Q ss_pred ccccC--CCCCC--CCCcccccceeecccccCCcEEEEeC
Q 009719 446 SLIKN--PGSNK--NSCSLVDLMVEMDRMLRPEGTVVVRD 481 (527)
Q Consensus 446 s~~~~--~~~~~--~rC~~~~illEmDRILRP~G~~iird 481 (527)
-.+-+ |..+. +.-.+..+|-|+-|+|+|||.++|.|
T Consensus 498 H~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D 537 (677)
T PRK06922 498 HELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRD 537 (677)
T ss_pred HhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 43210 00000 11245678999999999999999987
No 176
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=95.80 E-value=0.0027 Score=64.85 Aligned_cols=100 Identities=13% Similarity=0.228 Sum_probs=61.3
Q ss_pred cCCCCeeeEeecCCCccchhhhccCC-C---eeEEEecCCCCCCchhH----hhhccccccccccCCCCC--CCCCccch
Q 009719 369 LGTPAIRNIMDMNAFFGGFAAALTSD-P---VWVMNVVPARKSSTLSV----IYDRGLIGVYHDWCEPFS--TYPRTYDL 438 (527)
Q Consensus 369 i~~~~iRnvmDm~ag~GgFaAaL~~~-~---VwvMnvvp~~~~ntl~v----i~eRGLiG~~hdwce~fs--tYPrtyDL 438 (527)
+.....+.|+|+|||.|.++.++.++ | +.+. |-+..+.. +-+.|+-+-++-.+..|- .+| .+|+
T Consensus 145 ~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~-----D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~-~~D~ 218 (306)
T TIGR02716 145 AKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTIL-----NLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYP-EADA 218 (306)
T ss_pred cCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEE-----ecHHHHHHHHHHHHhCCccceEEEEecCccCCCCC-CCCE
Confidence 34456789999999999999888544 3 3333 22333333 344465332222222221 345 3798
Q ss_pred hhhcCccccccCCCCCCCCCcccccceeecccccCCcEEEEeC
Q 009719 439 IHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 481 (527)
Q Consensus 439 iHa~~~fs~~~~~~~~~~rC~~~~illEmDRILRP~G~~iird 481 (527)
+-.++++-.|. + -....+|-++-|.|+|||.++|-|
T Consensus 219 v~~~~~lh~~~------~-~~~~~il~~~~~~L~pgG~l~i~d 254 (306)
T TIGR02716 219 VLFCRILYSAN------E-QLSTIMCKKAFDAMRSGGRLLILD 254 (306)
T ss_pred EEeEhhhhcCC------h-HHHHHHHHHHHHhcCCCCEEEEEE
Confidence 76666665553 1 122458889999999999998875
No 177
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=95.75 E-value=0.011 Score=63.59 Aligned_cols=121 Identities=15% Similarity=0.086 Sum_probs=69.0
Q ss_pred eeEeecCCCccchhhhccCC----CeeEEEecCCCCCCchhHhhhcccc---ccccccCCCCCCCC-CccchhhhcCcc-
Q 009719 375 RNIMDMNAFFGGFAAALTSD----PVWVMNVVPARKSSTLSVIYDRGLI---GVYHDWCEPFSTYP-RTYDLIHVSGIE- 445 (527)
Q Consensus 375 RnvmDm~ag~GgFaAaL~~~----~VwvMnvvp~~~~ntl~vi~eRGLi---G~~hdwce~fstYP-rtyDLiHa~~~f- 445 (527)
..++|+|||.|.|+.+|... .+.-+=+-+......+.-+-++||- -+..|--+-+..+| .++|.|+.. |
T Consensus 124 p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~ln--FP 201 (390)
T PRK14121 124 KILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVH--FP 201 (390)
T ss_pred CeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEe--CC
Confidence 47999999999999998643 2222222211111223344555651 12223222122234 799999875 3
Q ss_pred ccccCCCCCCC-CCcccccceeecccccCCcEEEEe-CCHHHHHHHHHHHhcC-Ccee
Q 009719 446 SLIKNPGSNKN-SCSLVDLMVEMDRMLRPEGTVVVR-DSPEVIDKVSRIANTV-RWTA 500 (527)
Q Consensus 446 s~~~~~~~~~~-rC~~~~illEmDRILRP~G~~iir-d~~~~~~~i~~i~~~l-~W~~ 500 (527)
..|. ...+ |=-...+|-|+=|+|+|||.+.++ |..++.+.+.+.+... +++.
T Consensus 202 dPW~---KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~~y~~~~~e~~~~~~~~~~ 256 (390)
T PRK14121 202 VPWD---KKPHRRVISEDFLNEALRVLKPGGTLELRTDSELYFEFSLELFLKLPKAKI 256 (390)
T ss_pred CCcc---ccchhhccHHHHHHHHHHHcCCCcEEEEEEECHHHHHHHHHHHHhCCCcee
Confidence 3452 1112 222368899999999999999887 5556655555554333 4544
No 178
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=95.71 E-value=0.0023 Score=62.67 Aligned_cols=96 Identities=19% Similarity=0.199 Sum_probs=63.5
Q ss_pred eEeecCCCccchhhhccCCCeeEEEecCCCCC-C-chhHhhhcccc--ccccccCCCCCCCCCccchhhhcCccccccCC
Q 009719 376 NIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-S-TLSVIYDRGLI--GVYHDWCEPFSTYPRTYDLIHVSGIESLIKNP 451 (527)
Q Consensus 376 nvmDm~ag~GgFaAaL~~~~VwvMnvvp~~~~-n-tl~vi~eRGLi--G~~hdwce~fstYPrtyDLiHa~~~fs~~~~~ 451 (527)
.|||+|||-|--|-+|.++..=|..|=-.... + ...++-++||- ....|.- .++ +|..||+|-+..+|-..
T Consensus 33 ~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~-~~~-~~~~yD~I~st~v~~fL--- 107 (192)
T PF03848_consen 33 KALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLN-DFD-FPEEYDFIVSTVVFMFL--- 107 (192)
T ss_dssp EEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGC-CBS--TTTEEEEEEESSGGGS---
T ss_pred cEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecch-hcc-ccCCcCEEEEEEEeccC---
Confidence 79999999999999998888766555433322 3 33445567773 2223322 222 57899999987777654
Q ss_pred CCCCCCCcccccceeecccccCCcEEEEe
Q 009719 452 GSNKNSCSLVDLMVEMDRMLRPEGTVVVR 480 (527)
Q Consensus 452 ~~~~~rC~~~~illEmDRILRP~G~~iir 480 (527)
++=.+..|+-.|-.-++||||+++-
T Consensus 108 ----~~~~~~~i~~~m~~~~~pGG~~li~ 132 (192)
T PF03848_consen 108 ----QRELRPQIIENMKAATKPGGYNLIV 132 (192)
T ss_dssp -----GGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred ----CHHHHHHHHHHHHhhcCCcEEEEEE
Confidence 3445677888899999999999883
No 179
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=95.69 E-value=0.0025 Score=58.18 Aligned_cols=97 Identities=16% Similarity=0.291 Sum_probs=61.3
Q ss_pred eeEeecCCCccchhhhccC---CCeeEEEecCCCCCCchhHhhh----cccc--c-cccccCCCCCC-CCCccchhhhcC
Q 009719 375 RNIMDMNAFFGGFAAALTS---DPVWVMNVVPARKSSTLSVIYD----RGLI--G-VYHDWCEPFST-YPRTYDLIHVSG 443 (527)
Q Consensus 375 RnvmDm~ag~GgFaAaL~~---~~VwvMnvvp~~~~ntl~vi~e----RGLi--G-~~hdwce~fst-YPrtyDLiHa~~ 443 (527)
-+|||+|||+|-++=.|.+ .+.=++.|=-.. .-+..+-+ .|+- = ...|.-+ ++. |+..||+|.+..
T Consensus 5 ~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~--~~i~~a~~~~~~~~~~ni~~~~~d~~~-l~~~~~~~~D~I~~~~ 81 (152)
T PF13847_consen 5 KKILDLGCGTGRLLIQLAKELNPGAKIIGVDISE--EMIEYAKKRAKELGLDNIEFIQGDIED-LPQELEEKFDIIISNG 81 (152)
T ss_dssp SEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSH--HHHHHHHHHHHHTTSTTEEEEESBTTC-GCGCSSTTEEEEEEES
T ss_pred CEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcH--HHHHHhhcccccccccccceEEeehhc-cccccCCCeeEEEEcC
Confidence 4799999999999888872 234444443222 33333333 3442 1 1123322 221 458899999998
Q ss_pred ccccccCCCCCCCCCcccccceeecccccCCcEEEEeCCH
Q 009719 444 IESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP 483 (527)
Q Consensus 444 ~fs~~~~~~~~~~rC~~~~illEmDRILRP~G~~iird~~ 483 (527)
.+... .+...+|-+|=|.|+|+|.+++.+-.
T Consensus 82 ~l~~~---------~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 82 VLHHF---------PDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp TGGGT---------SHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred chhhc---------cCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 88432 34467888999999999999999754
No 180
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=95.63 E-value=0.0062 Score=61.63 Aligned_cols=141 Identities=16% Similarity=0.192 Sum_probs=93.0
Q ss_pred cCCCCeeeEeecCCCccchhhhccCCCeeEEEecCCCCC-CchhHhhhccccc-cccccCCCCC--CCCCccchhhhcCc
Q 009719 369 LGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGLIG-VYHDWCEPFS--TYPRTYDLIHVSGI 444 (527)
Q Consensus 369 i~~~~iRnvmDm~ag~GgFaAaL~~~~VwvMnvvp~~~~-ntl~vi~eRGLiG-~~hdwce~fs--tYPrtyDLiHa~~~ 444 (527)
.+.+.+|.++|.|||+|-++-+|.+.-= -+-=+|-+ |-|..+.|+|+-- .||-=-..|. +=++-+|||-+..+
T Consensus 121 ~~~g~F~~~lDLGCGTGL~G~~lR~~a~---~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~AaDV 197 (287)
T COG4976 121 ADLGPFRRMLDLGCGTGLTGEALRDMAD---RLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIVAADV 197 (287)
T ss_pred ccCCccceeeecccCcCcccHhHHHHHh---hccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccchhhhhH
Confidence 4556799999999999999999965421 11122334 8899999999831 1111111244 45788999999999
Q ss_pred cccccCCCCCCCCCcccccceeecccccCCcEEEEeCC-------------HH---HHHHHHHHHhcCCceeEEe-----
Q 009719 445 ESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS-------------PE---VIDKVSRIANTVRWTAAVH----- 503 (527)
Q Consensus 445 fs~~~~~~~~~~rC~~~~illEmDRILRP~G~~iird~-------------~~---~~~~i~~i~~~l~W~~~~~----- 503 (527)
|+-.- .++.++.=.++.|.|||.++++-+ .. --..|.....+---++..+
T Consensus 198 l~YlG---------~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~~tti 268 (287)
T COG4976 198 LPYLG---------ALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEVIAIEDTTI 268 (287)
T ss_pred HHhhc---------chhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceEEEeecccc
Confidence 98542 468899999999999999999831 00 1234566655555555433
Q ss_pred cCCCCCCCCceEEEEEec
Q 009719 504 DKEPGSNGREKILVATKS 521 (527)
Q Consensus 504 ~~e~~~~~~ekiLi~~K~ 521 (527)
-.+.+.-.+..+.|++|+
T Consensus 269 R~d~g~pv~G~L~iark~ 286 (287)
T COG4976 269 RRDAGEPVPGILVIARKK 286 (287)
T ss_pred hhhcCCCCCCceEEEecC
Confidence 123344445567777775
No 181
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=95.59 E-value=0.011 Score=57.82 Aligned_cols=53 Identities=28% Similarity=0.451 Sum_probs=34.4
Q ss_pred eeccccCCCCCCCcccEEEecCcccccccChH-HHHHHHhhcccCCcEEEEecC
Q 009719 183 AMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNA-TYLIEVDRLLRPGGYLVISGP 235 (527)
Q Consensus 183 ~v~dae~LPFpD~SFDlV~cs~~l~hw~d~~~-~aL~Ei~RVLRPGG~lviS~p 235 (527)
.+.+....+-+.+.||+|.|.-+++++....+ .++.-+++.|+|||+|++...
T Consensus 123 ~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~s 176 (196)
T PF01739_consen 123 RRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGHS 176 (196)
T ss_dssp EE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-TT
T ss_pred EecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEecC
Confidence 33443333445789999999999999977653 599999999999999999765
No 182
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=95.59 E-value=0.067 Score=50.33 Aligned_cols=100 Identities=16% Similarity=0.196 Sum_probs=57.8
Q ss_pred CcChHHHHHHHHHc----CCC-cEEeeccccCCCCCCCcccEEEecCcccccccC-----hHHHHHHHhhcccCCcEEEE
Q 009719 163 RDSHKAQIQFALER----GIP-AFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAY-----NATYLIEVDRLLRPGGYLVI 232 (527)
Q Consensus 163 ~D~seaqvq~A~eR----g~p-a~~~v~dae~LPFpD~SFDlV~cs~~l~hw~d~-----~~~aL~Ei~RVLRPGG~lvi 232 (527)
.|.++..++.|++. ++. +.+...|... +++++.||+|+|.-=+ |.... ...++.+..+.|||||.|++
T Consensus 61 vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~-~~~~~~fD~Iv~NPP~-~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~l 138 (170)
T PF05175_consen 61 VDINPDALELAKRNAERNGLENVEVVQSDLFE-ALPDGKFDLIVSNPPF-HAGGDDGLDLLRDFIEQARRYLKPGGRLFL 138 (170)
T ss_dssp EESBHHHHHHHHHHHHHTTCTTEEEEESSTTT-TCCTTCEEEEEE---S-BTTSHCHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred EcCCHHHHHHHHHHHHhcCccccccccccccc-cccccceeEEEEccch-hcccccchhhHHHHHHHHHHhccCCCEEEE
Confidence 37777888877653 455 5555555421 3348999999997432 22221 13489999999999999977
Q ss_pred ecCCCCCCCchhHHHHHHHHHHhcceEEeeeecceEEEe
Q 009719 233 SGPPVQWPKQDKEWADLQAVARALCYELIAVDGNTVIWK 271 (527)
Q Consensus 233 S~pp~~~~~~~~~w~~i~~l~~~mcW~~~~~~~~v~iwr 271 (527)
...... .... .++++.. -=+.+.+.....|+|
T Consensus 139 v~~~~~---~~~~--~l~~~f~--~~~~~~~~~~~~v~~ 170 (170)
T PF05175_consen 139 VINSHL---GYER--LLKELFG--DVEVVAKNKGFRVLR 170 (170)
T ss_dssp EEETTS---CHHH--HHHHHHS----EEEEEESSEEEEE
T ss_pred EeecCC---ChHH--HHHHhcC--CEEEEEECCCEEEeC
Confidence 554211 1111 1333333 135566667777776
No 183
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=95.57 E-value=0.02 Score=58.32 Aligned_cols=141 Identities=18% Similarity=0.256 Sum_probs=78.1
Q ss_pred eeEeecCCCccchhhhccCC-CeeEEEecCCCCC-CchhHhhhc----cc---c-ccccccCCCCCCCCCccchhhhcCc
Q 009719 375 RNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVIYDR----GL---I-GVYHDWCEPFSTYPRTYDLIHVSGI 444 (527)
Q Consensus 375 RnvmDm~ag~GgFaAaL~~~-~VwvMnvvp~~~~-ntl~vi~eR----GL---i-G~~hdwce~fstYPrtyDLiHa~~~ 444 (527)
..|+|+|||.|.++.+|... +-+ +|.-+|.. ..+.++-+. |+ + =+..||.+++. ...||+|=++--
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~--~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~--~~~fDlIvsNPP 191 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNA--EVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLA--GQKIDIIVSNPP 191 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCC--EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCc--CCCccEEEECCC
Confidence 47999999999999888653 211 22333332 344433332 33 1 12357776552 237998876522
Q ss_pred cccccC-----------C----CCCCCCC-cccccceeecccccCCcEEEEeCCHHHHHHHHHHHh-cCCceeEEecCCC
Q 009719 445 ESLIKN-----------P----GSNKNSC-SLVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRIAN-TVRWTAAVHDKEP 507 (527)
Q Consensus 445 fs~~~~-----------~----~~~~~rC-~~~~illEmDRILRP~G~~iird~~~~~~~i~~i~~-~l~W~~~~~~~e~ 507 (527)
+..-.+ | ..+.++- .+..++-+.-+.|+|||++++--..+.-..++++.. ...|..... ..|
T Consensus 192 yi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~q~~~~~~~~~~~~~~~~~~~-~~D 270 (284)
T TIGR00536 192 YIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNWQQKSLKELLRIKFTWYDVEN-GRD 270 (284)
T ss_pred CCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHHHHHHHHHHhcCCCceeEE-ecC
Confidence 111000 0 0000000 133577778899999999999765555556777665 456643222 222
Q ss_pred CCCCCceEEEEEec
Q 009719 508 GSNGREKILVATKS 521 (527)
Q Consensus 508 ~~~~~ekiLi~~K~ 521 (527)
-.+.++++++++.
T Consensus 271 -~~g~~R~~~~~~~ 283 (284)
T TIGR00536 271 -LNGKERVVLGFYH 283 (284)
T ss_pred -CCCCceEEEEEec
Confidence 3356889988753
No 184
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=95.56 E-value=0.0083 Score=58.18 Aligned_cols=90 Identities=23% Similarity=0.263 Sum_probs=51.1
Q ss_pred eeEeecCCCccchhhhccC-----CCeeEEEecCCCCCCchhHhhhccccc---cc-cccCCCCCCCCCccchhhhcCcc
Q 009719 375 RNIMDMNAFFGGFAAALTS-----DPVWVMNVVPARKSSTLSVIYDRGLIG---VY-HDWCEPFSTYPRTYDLIHVSGIE 445 (527)
Q Consensus 375 RnvmDm~ag~GgFaAaL~~-----~~VwvMnvvp~~~~ntl~vi~eRGLiG---~~-hdwce~fstYPrtyDLiHa~~~f 445 (527)
..|||+|||.|.+++.|.+ ..|..+-+.|.-....-+-+...|+-. +. .|-.+.++. ..+||.|.++..+
T Consensus 74 ~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~-~~~fD~Ii~~~~~ 152 (205)
T PRK13944 74 MKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEK-HAPFDAIIVTAAA 152 (205)
T ss_pred CEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCcc-CCCccEEEEccCc
Confidence 4699999999999877643 234444443321110111223345422 22 233333322 3689999987544
Q ss_pred ccccCCCCCCCCCcccccceeecccccCCcEEEEe
Q 009719 446 SLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 480 (527)
Q Consensus 446 s~~~~~~~~~~rC~~~~illEmDRILRP~G~~iir 480 (527)
... .=|+-|+|+|||.+++-
T Consensus 153 ~~~---------------~~~l~~~L~~gG~lvi~ 172 (205)
T PRK13944 153 STI---------------PSALVRQLKDGGVLVIP 172 (205)
T ss_pred chh---------------hHHHHHhcCcCcEEEEE
Confidence 322 22566999999999885
No 185
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=95.54 E-value=0.0097 Score=56.02 Aligned_cols=146 Identities=19% Similarity=0.255 Sum_probs=73.8
Q ss_pred cCCCCeeeEeecCCCccchhhhccCCC-----eeEEEecCCCCCCchhHhhhcccc---ccccccCCCCCCCCCccchhh
Q 009719 369 LGTPAIRNIMDMNAFFGGFAAALTSDP-----VWVMNVVPARKSSTLSVIYDRGLI---GVYHDWCEPFSTYPRTYDLIH 440 (527)
Q Consensus 369 i~~~~iRnvmDm~ag~GgFaAaL~~~~-----VwvMnvvp~~~~ntl~vi~eRGLi---G~~hdwce~fstYPrtyDLiH 440 (527)
+..+.-.+|+|.||+-|||..++.++. |+-+-+.|.+...-+..+ +|=| .+...-.+.++.=.+.+|||-
T Consensus 19 ~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~~~~~~i--~~d~~~~~~~~~i~~~~~~~~~~~dlv~ 96 (181)
T PF01728_consen 19 FKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPLQNVSFI--QGDITNPENIKDIRKLLPESGEKFDLVL 96 (181)
T ss_dssp S-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS-TTEEBT--TGGGEEEEHSHHGGGSHGTTTCSESEEE
T ss_pred CCcccccEEEEcCCcccceeeeeeecccccceEEEEeccccccccceeee--ecccchhhHHHhhhhhccccccCcceec
Confidence 455678999999999999999998776 334555555322212222 2211 111111222221126799999
Q ss_pred hcCccccccCCCCCCCCCccccccee---ecccccCCcEEEEe-----CCHHHHHHHHHHHhcCCceeEEecCCCCCCCC
Q 009719 441 VSGIESLIKNPGSNKNSCSLVDLMVE---MDRMLRPEGTVVVR-----DSPEVIDKVSRIANTVRWTAAVHDKEPGSNGR 512 (527)
Q Consensus 441 a~~~fs~~~~~~~~~~rC~~~~illE---mDRILRP~G~~iir-----d~~~~~~~i~~i~~~l~W~~~~~~~e~~~~~~ 512 (527)
|+..+..-.++..+ .--.+..++-+ +-..|+|||.+|+. +..+++..++...+.+++-.- .-..+...
T Consensus 97 ~D~~~~~~g~~~~d-~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~~~~~~~l~~~F~~v~~~Kp---~~sr~~s~ 172 (181)
T PF01728_consen 97 SDMAPNVSGDRNID-EFISIRLILSQLLLALELLKPGGTFVIKVFKGPEIEELIYLLKRCFSKVKIVKP---PSSRSESS 172 (181)
T ss_dssp E-------SSHHSS-HHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTSHHHHHHHHHHHHHEEEEE----TTSBTTCB
T ss_pred cccccCCCCchhhH-HHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccHHHHHHHHHhCCeEEEEEEC---cCCCCCcc
Confidence 98754321100000 00001112222 22559999988874 334677777777666554322 22355668
Q ss_pred ceEEEEEe
Q 009719 513 EKILVATK 520 (527)
Q Consensus 513 ekiLi~~K 520 (527)
|.-|||.+
T Consensus 173 E~Ylv~~~ 180 (181)
T PF01728_consen 173 EEYLVCRG 180 (181)
T ss_dssp EEEEESEE
T ss_pred EEEEEEcC
Confidence 89998874
No 186
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=95.51 E-value=0.01 Score=64.23 Aligned_cols=77 Identities=22% Similarity=0.341 Sum_probs=49.9
Q ss_pred cCcChHHHHHHHHHc----CCC-cEEeeccccCCC--CCCCcccEEEecC------cccc-----cccC----------h
Q 009719 162 PRDSHKAQIQFALER----GIP-AFVAMLGTRRLP--FPAFSFDIVHCSR------CLIP-----FTAY----------N 213 (527)
Q Consensus 162 p~D~seaqvq~A~eR----g~p-a~~~v~dae~LP--FpD~SFDlV~cs~------~l~h-----w~d~----------~ 213 (527)
..|.++.+++.++++ |+. +.+..+|+..++ ++ ++||+|++.- .+.+ |... .
T Consensus 280 avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~-~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q 358 (444)
T PRK14902 280 ALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFA-EKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQ 358 (444)
T ss_pred EEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhc-ccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHH
Confidence 337777787777643 544 456677876653 44 8899999641 1111 1111 1
Q ss_pred HHHHHHHhhcccCCcEEEEecCCCCC
Q 009719 214 ATYLIEVDRLLRPGGYLVISGPPVQW 239 (527)
Q Consensus 214 ~~aL~Ei~RVLRPGG~lviS~pp~~~ 239 (527)
..+|.++.|+|||||++++|+.....
T Consensus 359 ~~iL~~a~~~LkpGG~lvystcs~~~ 384 (444)
T PRK14902 359 LEILESVAQYLKKGGILVYSTCTIEK 384 (444)
T ss_pred HHHHHHHHHHcCCCCEEEEEcCCCCh
Confidence 23799999999999999998864443
No 187
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=95.42 E-value=0.013 Score=60.85 Aligned_cols=117 Identities=21% Similarity=0.225 Sum_probs=64.4
Q ss_pred eeEeecCCCccchhhhccCC-CeeEEEecCCCCC-CchhHhhh----ccc---ccc-ccccCCCCCCCCCccchhhhcCc
Q 009719 375 RNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVIYD----RGL---IGV-YHDWCEPFSTYPRTYDLIHVSGI 444 (527)
Q Consensus 375 RnvmDm~ag~GgFaAaL~~~-~VwvMnvvp~~~~-ntl~vi~e----RGL---iG~-~hdwce~fstYPrtyDLiHa~~~ 444 (527)
.+|+|+|||.|.++.+|... |-+ +|+-+|-. ..+.++-+ .|+ |-+ ..|+-+.++ +.+||+|-++--
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~--~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~--~~~fDlIvsNPP 210 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDA--EVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALP--GRRYDLIVSNPP 210 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCC--EEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCC--CCCccEEEECCC
Confidence 57999999999999988643 322 23334432 44443322 344 222 234444332 368999988632
Q ss_pred ccccc-----------CCC----CCCCCCc-ccccceeecccccCCcEEEEeCCHHHHHHHHHHHhcC
Q 009719 445 ESLIK-----------NPG----SNKNSCS-LVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRIANTV 496 (527)
Q Consensus 445 fs~~~-----------~~~----~~~~rC~-~~~illEmDRILRP~G~~iird~~~~~~~i~~i~~~l 496 (527)
+.... .|. .+.++.. ...++-+.-+.|+|||.+++.-..+ ..++.++....
T Consensus 211 yi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~-~~~~~~~~~~~ 277 (307)
T PRK11805 211 YVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNS-RVHLEEAYPDV 277 (307)
T ss_pred CCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcC-HHHHHHHHhhC
Confidence 22110 000 0001111 2367788889999999999863322 34566665543
No 188
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=95.37 E-value=0.083 Score=54.16 Aligned_cols=89 Identities=12% Similarity=0.067 Sum_probs=53.6
Q ss_pred hhccccccccC--CeeEEeeccCcChHHHHHHHHHc----CCC--cEEeeccccCCCCCCCcccEEEecC----------
Q 009719 143 VASFGGSMLSE--NILTLSFAPRDSHKAQIQFALER----GIP--AFVAMLGTRRLPFPAFSFDIVHCSR---------- 204 (527)
Q Consensus 143 vgsfga~Ll~r--~V~~msiAp~D~seaqvq~A~eR----g~p--a~~~v~dae~LPFpD~SFDlV~cs~---------- 204 (527)
.|.++..|..+ +.. +...|.++.+++.|+++ ++. +.+..+|... ++++++||+|+|.-
T Consensus 132 sG~i~~~la~~~~~~~---v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~-~~~~~~fD~Iv~NPPy~~~~~~~~ 207 (284)
T TIGR03533 132 SGCIAIACAYAFPEAE---VDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFA-ALPGRKYDLIVSNPPYVDAEDMAD 207 (284)
T ss_pred hhHHHHHHHHHCCCCE---EEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhh-ccCCCCccEEEECCCCCCccchhh
Confidence 34444445443 333 33337788888888754 543 4556666522 34567899999851
Q ss_pred ---ccccccc-------Ch----HHHHHHHhhcccCCcEEEEecC
Q 009719 205 ---CLIPFTA-------YN----ATYLIEVDRLLRPGGYLVISGP 235 (527)
Q Consensus 205 ---~l~hw~d-------~~----~~aL~Ei~RVLRPGG~lviS~p 235 (527)
.+.|.+. ++ ..++.++.++|+|||++++-..
T Consensus 208 l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g 252 (284)
T TIGR03533 208 LPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVG 252 (284)
T ss_pred CCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 0111110 00 2368999999999999998764
No 189
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=95.36 E-value=0.016 Score=56.96 Aligned_cols=65 Identities=22% Similarity=0.186 Sum_probs=49.7
Q ss_pred HHHHHHHHHcCCCcEEeeccccCCCCCCCcccEEEecCcccccccChH-HHHHHHhhcccCC--cEEEEecC
Q 009719 167 KAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNA-TYLIEVDRLLRPG--GYLVISGP 235 (527)
Q Consensus 167 eaqvq~A~eRg~pa~~~v~dae~LPFpD~SFDlV~cs~~l~hw~d~~~-~aL~Ei~RVLRPG--G~lviS~p 235 (527)
+..++.|.+ .-...+..+|.. =|+|. +|+++.+++||+|.+... ..|+.+.+.|+|| |+++|..+
T Consensus 133 p~v~~~~~~-~~rv~~~~gd~f-~~~P~--~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~ 200 (241)
T PF00891_consen 133 PEVIEQAKE-ADRVEFVPGDFF-DPLPV--ADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEM 200 (241)
T ss_dssp HHHHCCHHH-TTTEEEEES-TT-TCCSS--ESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEE
T ss_pred Hhhhhcccc-ccccccccccHH-hhhcc--ccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEee
Confidence 455666666 334556666765 56776 999999999999998764 5999999999999 99999775
No 190
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=95.35 E-value=0.015 Score=55.34 Aligned_cols=56 Identities=13% Similarity=-0.046 Sum_probs=37.5
Q ss_pred cEEeeccccCCC--------CCCCcccEEEecCcc---cccccC-------hHHHHHHHhhcccCCcEEEEecC
Q 009719 180 AFVAMLGTRRLP--------FPAFSFDIVHCSRCL---IPFTAY-------NATYLIEVDRLLRPGGYLVISGP 235 (527)
Q Consensus 180 a~~~v~dae~LP--------FpD~SFDlV~cs~~l---~hw~d~-------~~~aL~Ei~RVLRPGG~lviS~p 235 (527)
+.+..+|....+ +++++||+|+|..+. -+|.-+ ...+|.++.|+|||||++++...
T Consensus 74 i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~ 147 (188)
T TIGR00438 74 VDFIRGDFTDEEVLNKIRERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVF 147 (188)
T ss_pred ceEEEeeCCChhHHHHHHHHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEc
Confidence 345555655443 678899999986431 112111 13489999999999999999653
No 191
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=95.34 E-value=0.043 Score=56.36 Aligned_cols=160 Identities=19% Similarity=0.248 Sum_probs=92.1
Q ss_pred cchhhHHHHHHHHHHHHHhhhccCCCCeeeEeecCCCccchhhhccCC-CeeEEEecCCCCC-CchhHh----hhccc--
Q 009719 347 FEADSRRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVI----YDRGL-- 418 (527)
Q Consensus 347 f~~d~~~W~~~v~~Y~~~l~~~i~~~~iRnvmDm~ag~GgFaAaL~~~-~VwvMnvvp~~~~-ntl~vi----~eRGL-- 418 (527)
...||+.+-..+..- +. ..+. +|+|||||.|.-|.+|... |. .+|+-+|-. .-|.++ -..|+
T Consensus 92 Pr~dTe~Lve~~l~~---~~---~~~~--~ilDlGTGSG~iai~la~~~~~--~~V~a~Dis~~Al~~A~~Na~~~~l~~ 161 (280)
T COG2890 92 PRPDTELLVEAALAL---LL---QLDK--RILDLGTGSGAIAIALAKEGPD--AEVIAVDISPDALALARENAERNGLVR 161 (280)
T ss_pred cCCchHHHHHHHHHh---hh---hcCC--cEEEecCChHHHHHHHHhhCcC--CeEEEEECCHHHHHHHHHHHHHcCCcc
Confidence 468899888887621 11 1112 9999999999999999544 33 234444332 333332 33343
Q ss_pred -cccccccCCCCCCCCCccchhhhcCcccccc-----------CC----CCCCCCC-cccccceeecccccCCcEEEEeC
Q 009719 419 -IGVYHDWCEPFSTYPRTYDLIHVSGIESLIK-----------NP----GSNKNSC-SLVDLMVEMDRMLRPEGTVVVRD 481 (527)
Q Consensus 419 -iG~~hdwce~fstYPrtyDLiHa~~~fs~~~-----------~~----~~~~~rC-~~~~illEmDRILRP~G~~iird 481 (527)
+-+..||=++. +.+||+|=++==...-. +| .++.++= -+..++-+..++|+|||++++.-
T Consensus 162 ~~~~~~dlf~~~---~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~ 238 (280)
T COG2890 162 VLVVQSDLFEPL---RGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEI 238 (280)
T ss_pred EEEEeeeccccc---CCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEE
Confidence 22333454444 45888876653222111 00 0011110 12367888999999999999997
Q ss_pred CHHHHHHHHHHHhcCCceeEEecCCCCCCCCceEEEEEe
Q 009719 482 SPEVIDKVSRIANTVRWTAAVHDKEPGSNGREKILVATK 520 (527)
Q Consensus 482 ~~~~~~~i~~i~~~l~W~~~~~~~e~~~~~~ekiLi~~K 520 (527)
..+-.++|+++.....+ .........-.+.+++.++++
T Consensus 239 g~~q~~~v~~~~~~~~~-~~~v~~~~d~~g~~rv~~~~~ 276 (280)
T COG2890 239 GLTQGEAVKALFEDTGF-FEIVETLKDLFGRDRVVLAKL 276 (280)
T ss_pred CCCcHHHHHHHHHhcCC-ceEEEEEecCCCceEEEEEEe
Confidence 76667788888888885 222222223335667776654
No 192
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=95.32 E-value=0.0086 Score=57.18 Aligned_cols=90 Identities=19% Similarity=0.286 Sum_probs=52.9
Q ss_pred eEeecCCCccchhhhccCC-CeeEEEecCCCC-CCchhHhhhccccccccccCCCCCCCC-CccchhhhcCccccccCCC
Q 009719 376 NIMDMNAFFGGFAAALTSD-PVWVMNVVPARK-SSTLSVIYDRGLIGVYHDWCEPFSTYP-RTYDLIHVSGIESLIKNPG 452 (527)
Q Consensus 376 nvmDm~ag~GgFaAaL~~~-~VwvMnvvp~~~-~ntl~vi~eRGLiG~~hdwce~fstYP-rtyDLiHa~~~fs~~~~~~ 452 (527)
+|+|+|||.|.++.+|.+. .+-+..+ +. +..+..+.++|+--+..|..+.++.++ ++||+|-+...|....
T Consensus 16 ~iLDiGcG~G~~~~~l~~~~~~~~~gi---D~s~~~i~~a~~~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~--- 89 (194)
T TIGR02081 16 RVLDLGCGDGELLALLRDEKQVRGYGI---EIDQDGVLACVARGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQATR--- 89 (194)
T ss_pred EEEEeCCCCCHHHHHHHhccCCcEEEE---eCCHHHHHHHHHcCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcCc---
Confidence 7999999999999988643 2212222 22 244445555665322333333233344 7999999988876543
Q ss_pred CCCCCCcccccceeecccccCCcEEEEe
Q 009719 453 SNKNSCSLVDLMVEMDRMLRPEGTVVVR 480 (527)
Q Consensus 453 ~~~~rC~~~~illEmDRILRP~G~~iir 480 (527)
+ ...+|-||-|+ +|.+|+.
T Consensus 90 ---d---~~~~l~e~~r~---~~~~ii~ 108 (194)
T TIGR02081 90 ---N---PEEILDEMLRV---GRHAIVS 108 (194)
T ss_pred ---C---HHHHHHHHHHh---CCeEEEE
Confidence 1 34566666555 5555554
No 193
>PRK04457 spermidine synthase; Provisional
Probab=95.26 E-value=0.028 Score=56.97 Aligned_cols=137 Identities=15% Similarity=0.108 Sum_probs=69.4
Q ss_pred CCeeeEeecCCCccchhhhccCC-C---eeEEEecCCCCCCchhHhhhc-cccc------cc-cccCCCCCCCCCccchh
Q 009719 372 PAIRNIMDMNAFFGGFAAALTSD-P---VWVMNVVPARKSSTLSVIYDR-GLIG------VY-HDWCEPFSTYPRTYDLI 439 (527)
Q Consensus 372 ~~iRnvmDm~ag~GgFaAaL~~~-~---VwvMnvvp~~~~ntl~vi~eR-GLiG------~~-hdwce~fstYPrtyDLi 439 (527)
..-++|+|+|||.|+++.+|... | |.++=+- +..+.++-+. ++.+ +. .|--+-+...|.+||+|
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEid----p~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I 140 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEIN----PQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVI 140 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECC----HHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEE
Confidence 45678999999999999877432 2 3332221 2333333322 1111 11 12111123446789999
Q ss_pred hhcCccccccCCCCCCCCCcccccceeecccccCCcEEEEe---CCHHHHHHHHHHHhcCCceeEEecCCCCCCCCceEE
Q 009719 440 HVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR---DSPEVIDKVSRIANTVRWTAAVHDKEPGSNGREKIL 516 (527)
Q Consensus 440 Ha~~~fs~~~~~~~~~~rC~~~~illEmDRILRP~G~~iir---d~~~~~~~i~~i~~~l~W~~~~~~~e~~~~~~ekiL 516 (527)
=++ .|..-. -........++-++=++|+|||.+++- .+...-..++.+.+.+.-.+.....+ .....|+
T Consensus 141 ~~D-~~~~~~----~~~~l~t~efl~~~~~~L~pgGvlvin~~~~~~~~~~~l~~l~~~F~~~~~~~~~~---~~~N~v~ 212 (262)
T PRK04457 141 LVD-GFDGEG----IIDALCTQPFFDDCRNALSSDGIFVVNLWSRDKRYDRYLERLESSFEGRVLELPAE---SHGNVAV 212 (262)
T ss_pred EEe-CCCCCC----CccccCcHHHHHHHHHhcCCCcEEEEEcCCCchhHHHHHHHHHHhcCCcEEEEecC---CCccEEE
Confidence 654 232110 001122357788889999999999983 33222222333333333222222222 1134788
Q ss_pred EEEe
Q 009719 517 VATK 520 (527)
Q Consensus 517 i~~K 520 (527)
++.|
T Consensus 213 ~a~~ 216 (262)
T PRK04457 213 FAFK 216 (262)
T ss_pred EEEC
Confidence 8877
No 194
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=95.26 E-value=0.013 Score=64.82 Aligned_cols=139 Identities=15% Similarity=0.261 Sum_probs=76.8
Q ss_pred eeEeecCCCccchhhhccCC-CeeEEEecCCCCC-CchhHhhhc----cccc----cccccCCCCCCCCCccchhhhcCc
Q 009719 375 RNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVIYDR----GLIG----VYHDWCEPFSTYPRTYDLIHVSGI 444 (527)
Q Consensus 375 RnvmDm~ag~GgFaAaL~~~-~VwvMnvvp~~~~-ntl~vi~eR----GLiG----~~hdwce~fstYPrtyDLiHa~~~ 444 (527)
.+|||+|||.|.++.+|... |-+ .|+-+|-. ..+.++-+. |+-. +..|+-+.+. ++.||+|-++--
T Consensus 140 ~~VLDlG~GsG~iai~la~~~p~~--~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~--~~~fDlIvsNPP 215 (506)
T PRK01544 140 LNILELGTGSGCIAISLLCELPNA--NVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIE--KQKFDFIVSNPP 215 (506)
T ss_pred CEEEEccCchhHHHHHHHHHCCCC--eEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCc--CCCccEEEECCC
Confidence 57999999999999877532 211 22333322 334443332 4321 2234444332 368999988543
Q ss_pred cccccC------------C----CCCCCC-CcccccceeecccccCCcEEEEeCCHHHHHHHHHHHhcCCceeEEecCCC
Q 009719 445 ESLIKN------------P----GSNKNS-CSLVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRIANTVRWTAAVHDKEP 507 (527)
Q Consensus 445 fs~~~~------------~----~~~~~r-C~~~~illEmDRILRP~G~~iird~~~~~~~i~~i~~~l~W~~~~~~~e~ 507 (527)
+..... | ..+.++ -.+..|+-++.++|+|||.+++.-..+--+++.+++....|+.... ..|
T Consensus 216 Yi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~~q~~~v~~~~~~~g~~~~~~-~~D 294 (506)
T PRK01544 216 YISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGFKQEEAVTQIFLDHGYNIESV-YKD 294 (506)
T ss_pred CCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECCchHHHHHHHHHhcCCCceEE-Eec
Confidence 322110 0 001111 1123466788999999999999755455667788777777764332 122
Q ss_pred CCCCCceEEEEE
Q 009719 508 GSNGREKILVAT 519 (527)
Q Consensus 508 ~~~~~ekiLi~~ 519 (527)
. .+.++++++.
T Consensus 295 ~-~g~~R~v~~~ 305 (506)
T PRK01544 295 L-QGHSRVILIS 305 (506)
T ss_pred C-CCCceEEEec
Confidence 2 2456777764
No 195
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=95.23 E-value=0.0061 Score=64.42 Aligned_cols=116 Identities=11% Similarity=0.020 Sum_probs=67.1
Q ss_pred eeEeecCCCccchhhhccCC-CeeEEEecCCCCC-CchhHhhhccc---cccccccCCCCCCCCCccchhhhcCcccccc
Q 009719 375 RNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVIYDRGL---IGVYHDWCEPFSTYPRTYDLIHVSGIESLIK 449 (527)
Q Consensus 375 RnvmDm~ag~GgFaAaL~~~-~VwvMnvvp~~~~-ntl~vi~eRGL---iG~~hdwce~fstYPrtyDLiHa~~~fs~~~ 449 (527)
..|||+|||.|.++..+.+. +- -+|.=+|.. +.+..+-++.- +-+.+.=-+.++.-..+||+|-+...+..+.
T Consensus 115 ~~VLDLGcGtG~~~l~La~~~~~--~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~~ 192 (340)
T PLN02490 115 LKVVDVGGGTGFTTLGIVKHVDA--KNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYWP 192 (340)
T ss_pred CEEEEEecCCcHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhCC
Confidence 47999999999988776432 11 122222322 44444444321 1111111122222237899998877776553
Q ss_pred CCCCCCCCCcccccceeecccccCCcEEEEeCCH--H---------------HHHHHHHHHhcCCceeE
Q 009719 450 NPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP--E---------------VIDKVSRIANTVRWTAA 501 (527)
Q Consensus 450 ~~~~~~~rC~~~~illEmDRILRP~G~~iird~~--~---------------~~~~i~~i~~~l~W~~~ 501 (527)
+...+|-|+-|+|+|||.+++.+.. + ..+++.+++++.-++..
T Consensus 193 ---------d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V 252 (340)
T PLN02490 193 ---------DPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDV 252 (340)
T ss_pred ---------CHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEE
Confidence 1246899999999999999875421 0 13556666777777643
No 196
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=95.11 E-value=0.017 Score=49.57 Aligned_cols=90 Identities=19% Similarity=0.214 Sum_probs=50.5
Q ss_pred eeEeecCCCccchhhhccCC-C-eeEEEecCCCCCCchhH----hhhccccc--cc-cc--cCCCCCCCCCccchhhhcC
Q 009719 375 RNIMDMNAFFGGFAAALTSD-P-VWVMNVVPARKSSTLSV----IYDRGLIG--VY-HD--WCEPFSTYPRTYDLIHVSG 443 (527)
Q Consensus 375 RnvmDm~ag~GgFaAaL~~~-~-VwvMnvvp~~~~ntl~v----i~eRGLiG--~~-hd--wce~fstYPrtyDLiHa~~ 443 (527)
.+|+|+|||.|.++..+.+. | .-|+-+-+.. ..+.. +.+.|+-. +. .| |+.. .-+.+||.|=+..
T Consensus 21 ~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~--~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~D~v~~~~ 96 (124)
T TIGR02469 21 DVLWDIGAGSGSITIEAARLVPNGRVYAIERNP--EALRLIERNARRFGVSNIVIVEGDAPEALE--DSLPEPDRVFIGG 96 (124)
T ss_pred CEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCH--HHHHHHHHHHHHhCCCceEEEeccccccCh--hhcCCCCEEEECC
Confidence 48999999999999888654 2 2233332221 22222 12223211 11 11 2221 1235788874432
Q ss_pred ccccccCCCCCCCCCcccccceeecccccCCcEEEEe
Q 009719 444 IESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 480 (527)
Q Consensus 444 ~fs~~~~~~~~~~rC~~~~illEmDRILRP~G~~iir 480 (527)
... .+..++-++-|.|+|||++++.
T Consensus 97 ~~~------------~~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 97 SGG------------LLQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred cch------------hHHHHHHHHHHHcCCCCEEEEE
Confidence 221 2356888999999999999984
No 197
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=95.06 E-value=0.049 Score=58.49 Aligned_cols=105 Identities=15% Similarity=0.086 Sum_probs=62.2
Q ss_pred eccCcChHHHHHHHHHc----CC----CcEEeeccccCCCCCCCcccEEEecCcccc---cccCh-HHHHHHHhhcccCC
Q 009719 160 FAPRDSHKAQIQFALER----GI----PAFVAMLGTRRLPFPAFSFDIVHCSRCLIP---FTAYN-ATYLIEVDRLLRPG 227 (527)
Q Consensus 160 iAp~D~seaqvq~A~eR----g~----pa~~~v~dae~LPFpD~SFDlV~cs~~l~h---w~d~~-~~aL~Ei~RVLRPG 227 (527)
+...|.++.+++.|++. +. .+.+...|... .+++.+||+|+|.-.++. +.+.. ...+.++.|+||||
T Consensus 255 V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~-~~~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpG 333 (378)
T PRK15001 255 VVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS-GVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKIN 333 (378)
T ss_pred EEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccc-cCCCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccC
Confidence 44458888899988764 22 12344444322 235578999999855432 11111 24899999999999
Q ss_pred cEEEEecCCCCCCCchhHHHHHHHHHHhcceEEeeeecceEEEeC
Q 009719 228 GYLVISGPPVQWPKQDKEWADLQAVARALCYELIAVDGNTVIWKK 272 (527)
Q Consensus 228 G~lviS~pp~~~~~~~~~w~~i~~l~~~mcW~~~~~~~~v~iwrK 272 (527)
|.|++... ....+.. .++++.. .-+.+++.....|++-
T Consensus 334 G~L~iV~n---r~l~y~~--~L~~~fg--~~~~va~~~kf~vl~a 371 (378)
T PRK15001 334 GELYIVAN---RHLDYFH--KLKKIFG--NCTTIATNNKFVVLKA 371 (378)
T ss_pred CEEEEEEe---cCcCHHH--HHHHHcC--CceEEccCCCEEEEEE
Confidence 99999853 2222222 2332211 1255666677777763
No 198
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=95.05 E-value=0.0078 Score=59.09 Aligned_cols=121 Identities=17% Similarity=0.265 Sum_probs=91.1
Q ss_pred hhhccCCCCeeeEeecCCCccchhhhccC-CCeeEEEecCCCCCCchhHhhhccccccccccCCCCCCCC-Cccchhhhc
Q 009719 365 LNVKLGTPAIRNIMDMNAFFGGFAAALTS-DPVWVMNVVPARKSSTLSVIYDRGLIGVYHDWCEPFSTYP-RTYDLIHVS 442 (527)
Q Consensus 365 l~~~i~~~~iRnvmDm~ag~GgFaAaL~~-~~VwvMnvvp~~~~ntl~vi~eRGLiG~~hdwce~fstYP-rtyDLiHa~ 442 (527)
+...|..+ -.|||.|||-|.+.+.|.+ +.|-..-|- ..+..+.-..+||+-=+-+|.-+.++.|| .+||.+=.+
T Consensus 7 I~~~I~pg--srVLDLGCGdG~LL~~L~~~k~v~g~GvE--id~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~VIls 82 (193)
T PF07021_consen 7 IAEWIEPG--SRVLDLGCGDGELLAYLKDEKQVDGYGVE--IDPDNVAACVARGVSVIQGDLDEGLADFPDQSFDYVILS 82 (193)
T ss_pred HHHHcCCC--CEEEecCCCchHHHHHHHHhcCCeEEEEe--cCHHHHHHHHHcCCCEEECCHHHhHhhCCCCCccEEehH
Confidence 33445555 5799999999999999976 677665553 22355777889999888889999999999 999999888
Q ss_pred CccccccCCCCCCCCCcccccceeecccccCCcEEEEe------------------------------CCHH----HHHH
Q 009719 443 GIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR------------------------------DSPE----VIDK 488 (527)
Q Consensus 443 ~~fs~~~~~~~~~~rC~~~~illEmDRILRP~G~~iir------------------------------d~~~----~~~~ 488 (527)
..+.... .-+.+|-|| ||=|.-+|++ |++. .+..
T Consensus 83 qtLQ~~~---------~P~~vL~Em---lRVgr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~D 150 (193)
T PF07021_consen 83 QTLQAVR---------RPDEVLEEM---LRVGRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKD 150 (193)
T ss_pred hHHHhHh---------HHHHHHHHH---HHhcCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHH
Confidence 7776553 136788898 5557788887 2333 4778
Q ss_pred HHHHHhcCCceeE
Q 009719 489 VSRIANTVRWTAA 501 (527)
Q Consensus 489 i~~i~~~l~W~~~ 501 (527)
.+.+.+.+..++.
T Consensus 151 Fe~lc~~~~i~I~ 163 (193)
T PF07021_consen 151 FEDLCRELGIRIE 163 (193)
T ss_pred HHHHHHHCCCEEE
Confidence 8888888888764
No 199
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=94.93 E-value=0.013 Score=59.55 Aligned_cols=114 Identities=19% Similarity=0.077 Sum_probs=74.5
Q ss_pred CCCeeeEeecCCCccchhhhcc-CCCeeEEEecCCCCC-CchhHhhhccccccccccCCCCC--------CCCCccchhh
Q 009719 371 TPAIRNIMDMNAFFGGFAAALT-SDPVWVMNVVPARKS-STLSVIYDRGLIGVYHDWCEPFS--------TYPRTYDLIH 440 (527)
Q Consensus 371 ~~~iRnvmDm~ag~GgFaAaL~-~~~VwvMnvvp~~~~-ntl~vi~eRGLiG~~hdwce~fs--------tYPrtyDLiH 440 (527)
...-|.+.|.|||.| +||..+ +. -=+|+-+|-. .+|++ ..-+---+||+=--+|+ -=+.+-|||-
T Consensus 31 ~~~h~~a~DvG~G~G-qa~~~iae~---~k~VIatD~s~~mL~~-a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~ 105 (261)
T KOG3010|consen 31 TEGHRLAWDVGTGNG-QAARGIAEH---YKEVIATDVSEAMLKV-AKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLIT 105 (261)
T ss_pred CCCcceEEEeccCCC-cchHHHHHh---hhhheeecCCHHHHHH-hhcCCCcccccCCccccccccccccCCCcceeeeh
Confidence 345679999999999 666553 22 1256667655 67774 34444445554333333 2378999999
Q ss_pred hcCccccccCCCCCCCCCcccccceeecccccCCc----EEEEeCCHHHHHHHHHHHhcCCce
Q 009719 441 VSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEG----TVVVRDSPEVIDKVSRIANTVRWT 499 (527)
Q Consensus 441 a~~~fs~~~~~~~~~~rC~~~~illEmDRILRP~G----~~iird~~~~~~~i~~i~~~l~W~ 499 (527)
|..+|- =|+++..+=|+-|+|||.| .|..+|+.-+..++.++..+++|+
T Consensus 106 ~Aqa~H----------WFdle~fy~~~~rvLRk~Gg~iavW~Y~dd~v~~pE~dsv~~r~~~~ 158 (261)
T KOG3010|consen 106 AAQAVH----------WFDLERFYKEAYRVLRKDGGLIAVWNYNDDFVDWPEFDSVMLRLYDS 158 (261)
T ss_pred hhhhHH----------hhchHHHHHHHHHHcCCCCCEEEEEEccCCCcCCHHHHHHHHHHhhc
Confidence 987764 4778999999999999999 223344444455555666666664
No 200
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=94.92 E-value=0.045 Score=54.23 Aligned_cols=43 Identities=35% Similarity=0.651 Sum_probs=35.2
Q ss_pred CCCCcccEEEecCccccc---ccChHHHHHHHhhcccCCcEEEEecCC
Q 009719 192 FPAFSFDIVHCSRCLIPF---TAYNATYLIEVDRLLRPGGYLVISGPP 236 (527)
Q Consensus 192 FpD~SFDlV~cs~~l~hw---~d~~~~aL~Ei~RVLRPGG~lviS~pp 236 (527)
+..++||+|+|.-++ |. ..-.+ ++.+..++|+|||.|++-+|.
T Consensus 98 ~~~~~~D~i~~~N~l-HI~p~~~~~~-lf~~a~~~L~~gG~L~~YGPF 143 (204)
T PF06080_consen 98 LSPESFDAIFCINML-HISPWSAVEG-LFAGAARLLKPGGLLFLYGPF 143 (204)
T ss_pred cCCCCcceeeehhHH-HhcCHHHHHH-HHHHHHHhCCCCCEEEEeCCc
Confidence 346799999999765 54 33444 999999999999999999984
No 201
>PRK00811 spermidine synthase; Provisional
Probab=94.90 E-value=0.04 Score=56.40 Aligned_cols=88 Identities=10% Similarity=0.106 Sum_probs=55.5
Q ss_pred ccccccccC-CeeEEeeccCcChHHHHHHHHHcC------C----CcEEeeccccC-CCCCCCcccEEEecCcccccccC
Q 009719 145 SFGGSMLSE-NILTLSFAPRDSHKAQIQFALERG------I----PAFVAMLGTRR-LPFPAFSFDIVHCSRCLIPFTAY 212 (527)
Q Consensus 145 sfga~Ll~r-~V~~msiAp~D~seaqvq~A~eRg------~----pa~~~v~dae~-LPFpD~SFDlV~cs~~l~hw~d~ 212 (527)
+.+..++.+ ++. .+...|+.+.+++.|++.- . .+.+..+|+.. ++..+++||+|++... .++...
T Consensus 89 ~~~~~~l~~~~~~--~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi~D~~-dp~~~~ 165 (283)
T PRK00811 89 GTLREVLKHPSVE--KITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVIIVDST-DPVGPA 165 (283)
T ss_pred HHHHHHHcCCCCC--EEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEEECCC-CCCCch
Confidence 333445554 333 3333466778888887641 1 23456677544 4556789999998754 343222
Q ss_pred h----HHHHHHHhhcccCCcEEEEecC
Q 009719 213 N----ATYLIEVDRLLRPGGYLVISGP 235 (527)
Q Consensus 213 ~----~~aL~Ei~RVLRPGG~lviS~p 235 (527)
. ..+++++.|+|+|||.+++...
T Consensus 166 ~~l~t~ef~~~~~~~L~~gGvlv~~~~ 192 (283)
T PRK00811 166 EGLFTKEFYENCKRALKEDGIFVAQSG 192 (283)
T ss_pred hhhhHHHHHHHHHHhcCCCcEEEEeCC
Confidence 1 2378899999999999998654
No 202
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=94.85 E-value=0.043 Score=56.50 Aligned_cols=108 Identities=16% Similarity=0.195 Sum_probs=71.6
Q ss_pred eeEeecCCCccchhhhccCCCeeEEEecCCCCCCchhHhhhccccccccccCCCCCCCCCccchhhhcCccccccCCCCC
Q 009719 375 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKSSTLSVIYDRGLIGVYHDWCEPFSTYPRTYDLIHVSGIESLIKNPGSN 454 (527)
Q Consensus 375 RnvmDm~ag~GgFaAaL~~~~VwvMnvvp~~~~ntl~vi~eRGLiG~~hdwce~fstYPrtyDLiHa~~~fs~~~~~~~~ 454 (527)
-.|-|||||-|-.|. =...+|.-|-+|+++..=+.-=| .. .+-=.+|-|++- .|+|+-
T Consensus 182 ~vIaD~GCGEakiA~-~~~~kV~SfDL~a~~~~V~~cDm------------~~-vPl~d~svDvaV--~CLSLM------ 239 (325)
T KOG3045|consen 182 IVIADFGCGEAKIAS-SERHKVHSFDLVAVNERVIACDM------------RN-VPLEDESVDVAV--FCLSLM------ 239 (325)
T ss_pred eEEEecccchhhhhh-ccccceeeeeeecCCCceeeccc------------cC-CcCccCcccEEE--eeHhhh------
Confidence 358899999887764 35567888888887664211100 00 111237888754 467753
Q ss_pred CCCCcccccceeecccccCCcEEEEeCCHHHHHHHHHH---HhcCCceeEEecCC
Q 009719 455 KNSCSLVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRI---ANTVRWTAAVHDKE 506 (527)
Q Consensus 455 ~~rC~~~~illEmDRILRP~G~~iird~~~~~~~i~~i---~~~l~W~~~~~~~e 506 (527)
+-++.+.+.|..|||+|||.++|-+-.+-...++.+ +++|-.++...|.+
T Consensus 240 --gtn~~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~~~~~d~~ 292 (325)
T KOG3045|consen 240 --GTNLADFIKEANRILKPGGLLYIAEVKSRFSDVKGFVRALTKLGFDVKHKDVS 292 (325)
T ss_pred --cccHHHHHHHHHHHhccCceEEEEehhhhcccHHHHHHHHHHcCCeeeehhhh
Confidence 346789999999999999999998755544444433 66777877666544
No 203
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=94.83 E-value=0.014 Score=56.94 Aligned_cols=95 Identities=19% Similarity=0.240 Sum_probs=59.1
Q ss_pred eeeEeecCCCccchhhhccCC-CeeEEEecCCCCC-CchhHhhhccc-cccc-cccCCCCCCCCCccchhhhcCcccccc
Q 009719 374 IRNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVIYDRGL-IGVY-HDWCEPFSTYPRTYDLIHVSGIESLIK 449 (527)
Q Consensus 374 iRnvmDm~ag~GgFaAaL~~~-~VwvMnvvp~~~~-ntl~vi~eRGL-iG~~-hdwce~fstYPrtyDLiHa~~~fs~~~ 449 (527)
-..|||+|||.|-++.+|... +- .++.-.|-. +.+..+-++-- +.+. .|-.++|+ +++||+|-+.+++.++.
T Consensus 44 ~~~VLDiGCG~G~~~~~L~~~~~~--~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~~~~--~~sfD~V~~~~vL~hl~ 119 (204)
T TIGR03587 44 IASILELGANIGMNLAALKRLLPF--KHIYGVEINEYAVEKAKAYLPNINIIQGSLFDPFK--DNFFDLVLTKGVLIHIN 119 (204)
T ss_pred CCcEEEEecCCCHHHHHHHHhCCC--CeEEEEECCHHHHHHHHhhCCCCcEEEeeccCCCC--CCCEEEEEECChhhhCC
Confidence 457999999999999998664 21 123333322 44554444210 1111 23233332 48999999999988653
Q ss_pred CCCCCCCCCcccccceeecccccCCcEEEEeC
Q 009719 450 NPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 481 (527)
Q Consensus 450 ~~~~~~~rC~~~~illEmDRILRP~G~~iird 481 (527)
.=.+..++-||-|++ +++++|.+
T Consensus 120 -------p~~~~~~l~el~r~~--~~~v~i~e 142 (204)
T TIGR03587 120 -------PDNLPTAYRELYRCS--NRYILIAE 142 (204)
T ss_pred -------HHHHHHHHHHHHhhc--CcEEEEEE
Confidence 124567888999998 57888864
No 204
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=94.79 E-value=0.012 Score=57.85 Aligned_cols=114 Identities=18% Similarity=0.265 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHH-----hhhccCCCCeeeEeecCCCccchhhhccCC-C---eeEEEecCCCCCCchhHhhhc-ccccc
Q 009719 352 RRWRRRVAYYKNT-----LNVKLGTPAIRNIMDMNAFFGGFAAALTSD-P---VWVMNVVPARKSSTLSVIYDR-GLIGV 421 (527)
Q Consensus 352 ~~W~~~v~~Y~~~-----l~~~i~~~~iRnvmDm~ag~GgFaAaL~~~-~---VwvMnvvp~~~~ntl~vi~eR-GLiG~ 421 (527)
+.|...+..+.+. +.....+..+++|+|+|+|.|.|++++... | +.|+- -|..+..+.+. .+--+
T Consensus 74 ~~f~~~m~~~~~~~~~~~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~D-----lp~v~~~~~~~~rv~~~ 148 (241)
T PF00891_consen 74 KRFNAAMAEYSRLNAFDILLEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFD-----LPEVIEQAKEADRVEFV 148 (241)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE------HHHHCCHHHTTTEEEE
T ss_pred HHHHHHHHhhhhcchhhhhhccccccCccEEEeccCcchHHHHHHHHHCCCCcceeec-----cHhhhhccccccccccc
Confidence 4555555554332 223467788999999999999999999432 2 34433 23223333331 12112
Q ss_pred ccccCCCCCCCCCccchhhhcCccccccCCCCCCCCCcccccceeecccccCC--cEEEEeC
Q 009719 422 YHDWCEPFSTYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPE--GTVVVRD 481 (527)
Q Consensus 422 ~hdwce~fstYPrtyDLiHa~~~fs~~~~~~~~~~rC~~~~illEmDRILRP~--G~~iird 481 (527)
=+| -|.++|. ||++...+++-.|.+ =....||--+=+.|+|| |.++|-|
T Consensus 149 ~gd---~f~~~P~-~D~~~l~~vLh~~~d-------~~~~~iL~~~~~al~pg~~g~llI~e 199 (241)
T PF00891_consen 149 PGD---FFDPLPV-ADVYLLRHVLHDWSD-------EDCVKILRNAAAALKPGKDGRLLIIE 199 (241)
T ss_dssp ES----TTTCCSS-ESEEEEESSGGGS-H-------HHHHHHHHHHHHHSEECTTEEEEEEE
T ss_pred ccc---HHhhhcc-ccceeeehhhhhcch-------HHHHHHHHHHHHHhCCCCCCeEEEEe
Confidence 222 2456788 999999999999851 22357888888999999 9999975
No 205
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=94.76 E-value=0.015 Score=56.18 Aligned_cols=99 Identities=13% Similarity=0.100 Sum_probs=57.1
Q ss_pred eeeEeecCCCccchhhhccCCCeeEEEecCCCCC-CchhHhhhc----cccccccccCCCCCCCCCccchhhhcCccccc
Q 009719 374 IRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GLIGVYHDWCEPFSTYPRTYDLIHVSGIESLI 448 (527)
Q Consensus 374 iRnvmDm~ag~GgFaAaL~~~~VwvMnvvp~~~~-ntl~vi~eR----GLiG~~hdwce~fstYPrtyDLiHa~~~fs~~ 448 (527)
-.+|||+|||.|.|+.+|.+...- |.-.|.. +.+..+-++ |+-...+-....+..-+.+||+|-+..++.++
T Consensus 64 ~~~vLDvGcG~G~~~~~l~~~~~~---v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~v~~~~~l~~~ 140 (230)
T PRK07580 64 GLRILDAGCGVGSLSIPLARRGAK---VVASDISPQMVEEARERAPEAGLAGNITFEVGDLESLLGRFDTVVCLDVLIHY 140 (230)
T ss_pred CCEEEEEeCCCCHHHHHHHHcCCE---EEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhccCCcCEEEEcchhhcC
Confidence 468999999999999988765432 2223322 334444332 22111111112233335789999998888655
Q ss_pred cCCCCCCCCCcccccceeecccccCCcEEEEeCC
Q 009719 449 KNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS 482 (527)
Q Consensus 449 ~~~~~~~~rC~~~~illEmDRILRP~G~~iird~ 482 (527)
. .-.+..++-++-|++.+++.+.+...
T Consensus 141 ~-------~~~~~~~l~~l~~~~~~~~~i~~~~~ 167 (230)
T PRK07580 141 P-------QEDAARMLAHLASLTRGSLIFTFAPY 167 (230)
T ss_pred C-------HHHHHHHHHHHHhhcCCeEEEEECCc
Confidence 3 22355677777787766665554443
No 206
>PRK13699 putative methylase; Provisional
Probab=94.75 E-value=0.066 Score=53.35 Aligned_cols=53 Identities=13% Similarity=0.098 Sum_probs=34.5
Q ss_pred EeeccccCC--CCCCCcccEEEec--Cc--ccccc----------cChHHHHHHHhhcccCCcEEEEec
Q 009719 182 VAMLGTRRL--PFPAFSFDIVHCS--RC--LIPFT----------AYNATYLIEVDRLLRPGGYLVISG 234 (527)
Q Consensus 182 ~~v~dae~L--PFpD~SFDlV~cs--~~--l~hw~----------d~~~~aL~Ei~RVLRPGG~lviS~ 234 (527)
+..+|+..+ .+||+|+|+|+.+ +. ..+.. +.....+.|+.|||||||.+++..
T Consensus 4 l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~ 72 (227)
T PRK13699 4 FILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFY 72 (227)
T ss_pred EEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 344565443 6889999999987 11 11110 111248999999999999998743
No 207
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=94.73 E-value=0.074 Score=57.96 Aligned_cols=160 Identities=12% Similarity=0.070 Sum_probs=85.4
Q ss_pred hhhHHHHHHHHHHHHHhhhccCCCCeeeEeecCCCccchhhhccC-CCeeEEEecCCCCC-CchhHhhh----ccc-c-c
Q 009719 349 ADSRRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTS-DPVWVMNVVPARKS-STLSVIYD----RGL-I-G 420 (527)
Q Consensus 349 ~d~~~W~~~v~~Y~~~l~~~i~~~~iRnvmDm~ag~GgFaAaL~~-~~VwvMnvvp~~~~-ntl~vi~e----RGL-i-G 420 (527)
.+|+.+.+.+-.. + ..+ .+|+|+|||.|.++.+|.. .+-. +|.-.|.. ..+.++-+ .|+ + =
T Consensus 236 peTE~LVe~aL~~---l----~~~--~rVLDLGcGSG~IaiaLA~~~p~a--~VtAVDiS~~ALe~AreNa~~~g~rV~f 304 (423)
T PRK14966 236 PETEHLVEAVLAR---L----PEN--GRVWDLGTGSGAVAVTVALERPDA--FVRASDISPPALETARKNAADLGARVEF 304 (423)
T ss_pred ccHHHHHHHhhhc---c----CCC--CEEEEEeChhhHHHHHHHHhCCCC--EEEEEECCHHHHHHHHHHHHHcCCcEEE
Confidence 5666666655332 2 222 2799999999999987753 2321 22222322 33333322 232 1 1
Q ss_pred cccccCCCCCCCCCccchhhhcCccccccC---------------CCCCCCCCc-ccccceeecccccCCcEEEEeCCHH
Q 009719 421 VYHDWCEPFSTYPRTYDLIHVSGIESLIKN---------------PGSNKNSCS-LVDLMVEMDRMLRPEGTVVVRDSPE 484 (527)
Q Consensus 421 ~~hdwce~fstYPrtyDLiHa~~~fs~~~~---------------~~~~~~rC~-~~~illEmDRILRP~G~~iird~~~ 484 (527)
+..|+.+....-...||+|-++--+..-.+ ...+.+... +..++-+.-+.|+|||++++--..+
T Consensus 305 i~gDl~e~~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~ 384 (423)
T PRK14966 305 AHGSWFDTDMPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFD 384 (423)
T ss_pred EEcchhccccccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECcc
Confidence 223554431101246999988654321100 000001111 2245556678899999998865555
Q ss_pred HHHHHHHHHhcCCceeEEecCCCCCCCCceEEEEEec
Q 009719 485 VIDKVSRIANTVRWTAAVHDKEPGSNGREKILVATKS 521 (527)
Q Consensus 485 ~~~~i~~i~~~l~W~~~~~~~e~~~~~~ekiLi~~K~ 521 (527)
--+.+++++++..|+....-. .-.+.++++++++.
T Consensus 385 Q~e~V~~ll~~~Gf~~v~v~k--Dl~G~dR~v~~~~~ 419 (423)
T PRK14966 385 QGAAVRGVLAENGFSGVETLP--DLAGLDRVTLGKYM 419 (423)
T ss_pred HHHHHHHHHHHCCCcEEEEEE--cCCCCcEEEEEEEh
Confidence 666888888887776433211 12356899998763
No 208
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=94.73 E-value=0.035 Score=58.29 Aligned_cols=64 Identities=11% Similarity=0.042 Sum_probs=45.8
Q ss_pred cChHHHHHHHHHc----CCC-cEEeeccccCCCCCCCcccEEEecCcccccccChHHHHHHHhhcccCCcEEEEec
Q 009719 164 DSHKAQIQFALER----GIP-AFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISG 234 (527)
Q Consensus 164 D~seaqvq~A~eR----g~p-a~~~v~dae~LPFpD~SFDlV~cs~~l~hw~d~~~~aL~Ei~RVLRPGG~lviS~ 234 (527)
|.++.+++.|+++ |.. +.+..+|+...+...+.||+|+++..+.+ ....+.++|||||++++..
T Consensus 112 Dis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~fD~Ii~~~g~~~-------ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 112 EYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAPYDVIFVTVGVDE-------VPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred ECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCCccEEEECCchHH-------hHHHHHHhcCCCCEEEEEe
Confidence 5567788777653 443 45566787777666688999998865543 2345678999999998854
No 209
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=94.65 E-value=0.033 Score=57.10 Aligned_cols=123 Identities=22% Similarity=0.257 Sum_probs=67.0
Q ss_pred eeEeecCCCccchhhhccCC-CeeEEEecCCCCC-CchhHhhh----ccc---cc-cccccCCCCCCCCCccchhhhcCc
Q 009719 375 RNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVIYD----RGL---IG-VYHDWCEPFSTYPRTYDLIHVSGI 444 (527)
Q Consensus 375 RnvmDm~ag~GgFaAaL~~~-~VwvMnvvp~~~~-ntl~vi~e----RGL---iG-~~hdwce~fstYPrtyDLiHa~~~ 444 (527)
.+|+|+|||.|.++.+|... +-. +|+-+|.. ..+.++-+ .|+ |- +..|+-+.++ +..||+|=++-=
T Consensus 123 ~~vLDlG~GsG~i~~~la~~~~~~--~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~--~~~fD~Iv~NPP 198 (284)
T TIGR03533 123 KRILDLCTGSGCIAIACAYAFPEA--EVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALP--GRKYDLIVSNPP 198 (284)
T ss_pred CEEEEEeCchhHHHHHHHHHCCCC--EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccC--CCCccEEEECCC
Confidence 57999999999999998653 211 22333332 33333332 354 21 1223333332 257999887622
Q ss_pred cccccC-----------C----CCCCCCCc-ccccceeecccccCCcEEEEeCCHHHHHHHHHHHhcCCceeEE
Q 009719 445 ESLIKN-----------P----GSNKNSCS-LVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRIANTVRWTAAV 502 (527)
Q Consensus 445 fs~~~~-----------~----~~~~~rC~-~~~illEmDRILRP~G~~iird~~~~~~~i~~i~~~l~W~~~~ 502 (527)
+..... | ..+.+... ...++-+.-+.|+|||.+++.-..+. .+++++.....|.-..
T Consensus 199 y~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~~~-~~v~~~~~~~~~~~~~ 271 (284)
T TIGR03533 199 YVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGNSM-EALEEAYPDVPFTWLE 271 (284)
T ss_pred CCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcCH-HHHHHHHHhCCCceee
Confidence 211000 0 00011111 24677888899999999998744333 5788877765554433
No 210
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=94.59 E-value=0.05 Score=55.34 Aligned_cols=86 Identities=17% Similarity=0.194 Sum_probs=50.2
Q ss_pred hhccccccccCCe-eEEeeccCcChHHHHHHHHH----cCC---CcEEeeccccCC--CCCCCcccEEEec-----Cccc
Q 009719 143 VASFGGSMLSENI-LTLSFAPRDSHKAQIQFALE----RGI---PAFVAMLGTRRL--PFPAFSFDIVHCS-----RCLI 207 (527)
Q Consensus 143 vgsfga~Ll~r~V-~~msiAp~D~seaqvq~A~e----Rg~---pa~~~v~dae~L--PFpD~SFDlV~cs-----~~l~ 207 (527)
.|-++..-+++|+ .+.+|.- | +.-+++|.- +++ ...+..+|+.++ .|+|+|||+|+-. ++-+
T Consensus 145 LGYtAi~a~~rGA~~VitvEk-d--p~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIiHDPPRfS~Age 221 (287)
T COG2521 145 LGYTAIEALERGAIHVITVEK-D--PNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAIIHDPPRFSLAGE 221 (287)
T ss_pred ccHHHHHHHHcCCcEEEEEee-C--CCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEeeCCCccchhhh
Confidence 3444445566776 4444421 2 233444432 111 234566776554 5999999999732 2211
Q ss_pred ccccChHHHHHHHhhcccCCcEEEEec
Q 009719 208 PFTAYNATYLIEVDRLLRPGGYLVISG 234 (527)
Q Consensus 208 hw~d~~~~aL~Ei~RVLRPGG~lviS~ 234 (527)
- ....+.+|++|||||||+++--+
T Consensus 222 L---YseefY~El~RiLkrgGrlFHYv 245 (287)
T COG2521 222 L---YSEEFYRELYRILKRGGRLFHYV 245 (287)
T ss_pred H---hHHHHHHHHHHHcCcCCcEEEEe
Confidence 1 11238999999999999998644
No 211
>PRK07402 precorrin-6B methylase; Provisional
Probab=94.58 E-value=0.1 Score=49.85 Aligned_cols=38 Identities=18% Similarity=0.282 Sum_probs=28.5
Q ss_pred cccccceeecccccCCcEEEEeCC-HHHHHHHHHHHhcC
Q 009719 459 SLVDLMVEMDRMLRPEGTVVVRDS-PEVIDKVSRIANTV 496 (527)
Q Consensus 459 ~~~~illEmDRILRP~G~~iird~-~~~~~~i~~i~~~l 496 (527)
.+..++-++-|+|+|||.+++-.. .+.+..+.+..+.+
T Consensus 120 ~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~ 158 (196)
T PRK07402 120 PIKEILQAVWQYLKPGGRLVATASSLEGLYAISEGLAQL 158 (196)
T ss_pred CHHHHHHHHHHhcCCCeEEEEEeecHHHHHHHHHHHHhc
Confidence 457889999999999999998863 44555566666554
No 212
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=94.51 E-value=0.029 Score=54.41 Aligned_cols=96 Identities=7% Similarity=0.092 Sum_probs=60.6
Q ss_pred eeeEeecCCCccchhhhccCCCeeEEEecCCCCC-CchhHhhhccc-------cccccccCCCCCCCCCccchhhhcCcc
Q 009719 374 IRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGL-------IGVYHDWCEPFSTYPRTYDLIHVSGIE 445 (527)
Q Consensus 374 iRnvmDm~ag~GgFaAaL~~~~VwvMnvvp~~~~-ntl~vi~eRGL-------iG~~hdwce~fstYPrtyDLiHa~~~f 445 (527)
-.+|+|+|||.|.|+..|.+...= |.=.|.. +.+..+.+|.- +... +..+...|.+||+|=+..++
T Consensus 56 ~~~vLDiGcG~G~~~~~la~~~~~---v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~---~~d~~~~~~~fD~ii~~~~l 129 (219)
T TIGR02021 56 GKRVLDAGCGTGLLSIELAKRGAI---VKAVDISEQMVQMARNRAQGRDVAGNVEFE---VNDLLSLCGEFDIVVCMDVL 129 (219)
T ss_pred CCEEEEEeCCCCHHHHHHHHCCCE---EEEEECCHHHHHHHHHHHHhcCCCCceEEE---ECChhhCCCCcCEEEEhhHH
Confidence 468999999999999999876542 3333433 45555555421 1111 11222234789988776665
Q ss_pred ccccCCCCCCCCCcccccceeecccccCCcEEEEeCC
Q 009719 446 SLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS 482 (527)
Q Consensus 446 s~~~~~~~~~~rC~~~~illEmDRILRP~G~~iird~ 482 (527)
..+. .-.+..++-++.|+++|++++.+...
T Consensus 130 ~~~~-------~~~~~~~l~~i~~~~~~~~~i~~~~~ 159 (219)
T TIGR02021 130 IHYP-------ASDMAKALGHLASLTKERVIFTFAPK 159 (219)
T ss_pred HhCC-------HHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 5442 23456788899999998888887643
No 213
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=94.47 E-value=0.085 Score=52.46 Aligned_cols=74 Identities=20% Similarity=0.358 Sum_probs=46.2
Q ss_pred eccCcChHHHHHHHHHc---CC--CcEEeeccccCCCCCCCcccEEEecCcccc------ccc-----------------
Q 009719 160 FAPRDSHKAQIQFALER---GI--PAFVAMLGTRRLPFPAFSFDIVHCSRCLIP------FTA----------------- 211 (527)
Q Consensus 160 iAp~D~seaqvq~A~eR---g~--pa~~~v~dae~LPFpD~SFDlV~cs~~l~h------w~d----------------- 211 (527)
+...|.++.+++.|+++ +. .+.+..+|... ++++++||+|+|.--.+. ...
T Consensus 135 v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~-~~~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g 213 (275)
T PRK09328 135 VTAVDISPEALAVARRNAKHGLGARVEFLQGDWFE-PLPGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDG 213 (275)
T ss_pred EEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccC-cCCCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCH
Confidence 33447778888888765 21 34555566522 445789999998521110 000
Q ss_pred --ChHHHHHHHhhcccCCcEEEEec
Q 009719 212 --YNATYLIEVDRLLRPGGYLVISG 234 (527)
Q Consensus 212 --~~~~aL~Ei~RVLRPGG~lviS~ 234 (527)
.-..++.++.++|||||++++..
T Consensus 214 ~~~~~~~~~~~~~~Lk~gG~l~~e~ 238 (275)
T PRK09328 214 LDFYRRIIEQAPRYLKPGGWLLLEI 238 (275)
T ss_pred HHHHHHHHHHHHHhcccCCEEEEEE
Confidence 01237788889999999999964
No 214
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=94.44 E-value=0.039 Score=60.66 Aligned_cols=69 Identities=29% Similarity=0.333 Sum_probs=48.5
Q ss_pred cChHHHHHHHHHcCC---C-cEEeeccccCCCCCCCcccEEEecCcccccccChH---------HHHHHHhhcccCCcEE
Q 009719 164 DSHKAQIQFALERGI---P-AFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNA---------TYLIEVDRLLRPGGYL 230 (527)
Q Consensus 164 D~seaqvq~A~eRg~---p-a~~~v~dae~LPFpD~SFDlV~cs~~l~hw~d~~~---------~aL~Ei~RVLRPGG~l 230 (527)
|.|.--+.....++. + ..+.++|...|.|+|+|||+|+-=-.+.+...+.. .-+.|++|||+|||++
T Consensus 78 D~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~ 157 (482)
T KOG2352|consen 78 DSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKY 157 (482)
T ss_pred cccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEE
Confidence 444444444444432 2 34677899999999999999997666666543332 2578999999999997
Q ss_pred EE
Q 009719 231 VI 232 (527)
Q Consensus 231 vi 232 (527)
+.
T Consensus 158 ~s 159 (482)
T KOG2352|consen 158 IS 159 (482)
T ss_pred EE
Confidence 65
No 215
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=94.35 E-value=0.11 Score=54.10 Aligned_cols=91 Identities=12% Similarity=0.048 Sum_probs=53.8
Q ss_pred hhccccccccCCeeEEeeccCcChHHHHHHHHHc----CCC--cEEeeccccCCCCCCCcccEEEecC------------
Q 009719 143 VASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIP--AFVAMLGTRRLPFPAFSFDIVHCSR------------ 204 (527)
Q Consensus 143 vgsfga~Ll~r~V~~msiAp~D~seaqvq~A~eR----g~p--a~~~v~dae~LPFpD~SFDlV~cs~------------ 204 (527)
.|.++.+|..+.- ...+...|.++.+++.|+++ ++. +.+..+|... ++++++||+|+|.-
T Consensus 144 sG~iai~la~~~p-~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~-~l~~~~fDlIvsNPPyi~~~~~~~l~ 221 (307)
T PRK11805 144 SGCIAIACAYAFP-DAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFA-ALPGRRYDLIVSNPPYVDAEDMADLP 221 (307)
T ss_pred hhHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhh-hCCCCCccEEEECCCCCCccchhhcC
Confidence 4444445544310 11233347788888888754 442 4566667532 34567899999861
Q ss_pred -ccccccc-------Ch----HHHHHHHhhcccCCcEEEEecC
Q 009719 205 -CLIPFTA-------YN----ATYLIEVDRLLRPGGYLVISGP 235 (527)
Q Consensus 205 -~l~hw~d-------~~----~~aL~Ei~RVLRPGG~lviS~p 235 (527)
-+.|.+. ++ ..++.++.++|+|||++++-..
T Consensus 222 ~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g 264 (307)
T PRK11805 222 AEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVG 264 (307)
T ss_pred HhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 0112111 01 2378999999999999999654
No 216
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=94.19 E-value=0.11 Score=53.45 Aligned_cols=85 Identities=20% Similarity=0.296 Sum_probs=57.9
Q ss_pred EeeccccCCCCCC---CcccEEEecCcccccccChHHHHHHHhhcccCCcEEEEecCCCCCCCch---------hHHHHH
Q 009719 182 VAMLGTRRLPFPA---FSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQD---------KEWADL 249 (527)
Q Consensus 182 ~~v~dae~LPFpD---~SFDlV~cs~~l~hw~d~~~~aL~Ei~RVLRPGG~lviS~pp~~~~~~~---------~~w~~i 249 (527)
...+|-..+.-++ ++||+|++.+ ++.-..+--.+|..|.++|||||+|+=-||--|-..+. -.|+++
T Consensus 148 m~aGDF~e~y~~~~~~~~~d~VvT~F-FIDTA~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~~~~~~~~sveLs~eEi 226 (270)
T PF07942_consen 148 MCAGDFLEVYGPDENKGSFDVVVTCF-FIDTAENIIEYIETIEHLLKPGGYWINFGPLLYHFEPMSIPNEMSVELSLEEI 226 (270)
T ss_pred EecCccEEecCCcccCCcccEEEEEE-EeechHHHHHHHHHHHHHhccCCEEEecCCccccCCCCCCCCCcccCCCHHHH
Confidence 3445555554444 8999998764 33433333349999999999999988888743211111 259999
Q ss_pred HHHHHhcceEEeeeecce
Q 009719 250 QAVARALCYELIAVDGNT 267 (527)
Q Consensus 250 ~~l~~~mcW~~~~~~~~v 267 (527)
.++.+.+-|+...++..+
T Consensus 227 ~~l~~~~GF~~~~~~~~i 244 (270)
T PF07942_consen 227 KELIEKLGFEIEKEESSI 244 (270)
T ss_pred HHHHHHCCCEEEEEEEee
Confidence 999999999998765433
No 217
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=93.92 E-value=0.033 Score=52.39 Aligned_cols=113 Identities=19% Similarity=0.205 Sum_probs=62.4
Q ss_pred eeeEeecCCCccchhhhccCC-CeeEEEecCCCCC-CchhHhh----hccc---cccccccCCCCCCCCCccchhhhcCc
Q 009719 374 IRNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVIY----DRGL---IGVYHDWCEPFSTYPRTYDLIHVSGI 444 (527)
Q Consensus 374 iRnvmDm~ag~GgFaAaL~~~-~VwvMnvvp~~~~-ntl~vi~----eRGL---iG~~hdwce~fstYPrtyDLiHa~~~ 444 (527)
-.+|+|+|||+|-.+.+|... +-..+-.+ |.. +-+..+. .-|+ --+.+|+.+.+. +..||+|=++--
T Consensus 32 ~~~vLDlG~G~G~i~~~la~~~~~~~v~~v--Di~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~--~~~fD~Iv~NPP 107 (170)
T PF05175_consen 32 GGRVLDLGCGSGVISLALAKRGPDAKVTAV--DINPDALELAKRNAERNGLENVEVVQSDLFEALP--DGKFDLIVSNPP 107 (170)
T ss_dssp TCEEEEETSTTSHHHHHHHHTSTCEEEEEE--ESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCC--TTCEEEEEE---
T ss_pred CCeEEEecCChHHHHHHHHHhCCCCEEEEE--cCCHHHHHHHHHHHHhcCcccccccccccccccc--ccceeEEEEccc
Confidence 456999999999888877443 22221111 222 2233222 2232 234556666554 589999877633
Q ss_pred cccccCCCCCCCCCcccccceeecccccCCcEE--EEeCCHHHHHHHHHHHh
Q 009719 445 ESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTV--VVRDSPEVIDKVSRIAN 494 (527)
Q Consensus 445 fs~~~~~~~~~~rC~~~~illEmDRILRP~G~~--iird~~~~~~~i~~i~~ 494 (527)
|..- .......+..++-+-=++|+|||.+ +++.....-..++++..
T Consensus 108 ~~~~----~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~~~~~~~l~~~f~ 155 (170)
T PF05175_consen 108 FHAG----GDDGLDLLRDFIEQARRYLKPGGRLFLVINSHLGYERLLKELFG 155 (170)
T ss_dssp SBTT----SHCHHHHHHHHHHHHHHHEEEEEEEEEEEETTSCHHHHHHHHHS
T ss_pred hhcc----cccchhhHHHHHHHHHHhccCCCEEEEEeecCCChHHHHHHhcC
Confidence 2210 0001123567888999999999977 55555444444555554
No 218
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=93.81 E-value=0.14 Score=52.27 Aligned_cols=72 Identities=24% Similarity=0.258 Sum_probs=51.6
Q ss_pred cChHHHHHHHHHcCC------CcEEeecccc--CCCCCCCcccEEEecCcccccccCh-HHHHHHHhhcccCCcEEEEec
Q 009719 164 DSHKAQIQFALERGI------PAFVAMLGTR--RLPFPAFSFDIVHCSRCLIPFTAYN-ATYLIEVDRLLRPGGYLVISG 234 (527)
Q Consensus 164 D~seaqvq~A~eRg~------pa~~~v~dae--~LPFpD~SFDlV~cs~~l~hw~d~~-~~aL~Ei~RVLRPGG~lviS~ 234 (527)
|.++..+++.+++.. -+.+.-.... .-|.+.+++|.|++-++|.-.+... ..++..+.|+|||||.+++..
T Consensus 104 Dfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrD 183 (264)
T KOG2361|consen 104 DFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRD 183 (264)
T ss_pred CCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEee
Confidence 777777777766521 1222222223 3467799999999999887765443 469999999999999999986
Q ss_pred C
Q 009719 235 P 235 (527)
Q Consensus 235 p 235 (527)
.
T Consensus 184 Y 184 (264)
T KOG2361|consen 184 Y 184 (264)
T ss_pred c
Confidence 5
No 219
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=93.78 E-value=0.052 Score=52.47 Aligned_cols=88 Identities=20% Similarity=0.234 Sum_probs=47.9
Q ss_pred eeeEeecCCCccchhhhccCCCeeEEEecCCCCCCchhHhhhc----cc--cccccccCCCCCCCC--CccchhhhcCcc
Q 009719 374 IRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKSSTLSVIYDR----GL--IGVYHDWCEPFSTYP--RTYDLIHVSGIE 445 (527)
Q Consensus 374 iRnvmDm~ag~GgFaAaL~~~~VwvMnvvp~~~~ntl~vi~eR----GL--iG~~hdwce~fstYP--rtyDLiHa~~~f 445 (527)
-..|||+|||.|.+++.|....--|..|-.. ++-+..+-++ |+ +-+.+. ..+.++| .+||+|.++..+
T Consensus 79 ~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~--~~~~~~a~~~~~~~~~~~v~~~~~--d~~~~~~~~~~fD~I~~~~~~ 154 (212)
T PRK00312 79 GDRVLEIGTGSGYQAAVLAHLVRRVFSVERI--KTLQWEAKRRLKQLGLHNVSVRHG--DGWKGWPAYAPFDRILVTAAA 154 (212)
T ss_pred CCEEEEECCCccHHHHHHHHHhCEEEEEeCC--HHHHHHHHHHHHHCCCCceEEEEC--CcccCCCcCCCcCEEEEccCc
Confidence 3579999999999988765431112222111 1222222221 33 111111 1223343 689999886544
Q ss_pred ccccCCCCCCCCCcccccceeecccccCCcEEEEe
Q 009719 446 SLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 480 (527)
Q Consensus 446 s~~~~~~~~~~rC~~~~illEmDRILRP~G~~iir 480 (527)
.. +.-++-+.|+|||.+++.
T Consensus 155 ~~---------------~~~~l~~~L~~gG~lv~~ 174 (212)
T PRK00312 155 PE---------------IPRALLEQLKEGGILVAP 174 (212)
T ss_pred hh---------------hhHHHHHhcCCCcEEEEE
Confidence 32 223455899999999885
No 220
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=93.76 E-value=0.11 Score=53.36 Aligned_cols=70 Identities=19% Similarity=0.319 Sum_probs=49.7
Q ss_pred eccCcChHHHHHHHHHcCCCcEEeeccccCCCCCCCcccEEEecCcccccccChHHHHHHHhhcccCCcEEEEec
Q 009719 160 FAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISG 234 (527)
Q Consensus 160 iAp~D~seaqvq~A~eRg~pa~~~v~dae~LPFpD~SFDlV~cs~~l~hw~d~~~~aL~Ei~RVLRPGG~lviS~ 234 (527)
+..++.|..|...-.+||..+. ++....=.+..||+|.|--+|-.- +.+...|.+|++.|+|+|+++++.
T Consensus 119 v~aTE~S~~Mr~rL~~kg~~vl----~~~~w~~~~~~fDvIscLNvLDRc-~~P~~LL~~i~~~l~p~G~lilAv 188 (265)
T PF05219_consen 119 VYATEASPPMRWRLSKKGFTVL----DIDDWQQTDFKFDVISCLNVLDRC-DRPLTLLRDIRRALKPNGRLILAV 188 (265)
T ss_pred EEeecCCHHHHHHHHhCCCeEE----ehhhhhccCCceEEEeehhhhhcc-CCHHHHHHHHHHHhCCCCEEEEEE
Confidence 4445667788777778886433 222233335689999998877443 344459999999999999999965
No 221
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=93.69 E-value=0.21 Score=50.08 Aligned_cols=80 Identities=16% Similarity=0.185 Sum_probs=53.5
Q ss_pred eccccCCCC---CCCcccEEEecCcccccccChH--HHHHHHhhcccCCcE-----EEEecCCCCCC-CchhHHHHHHHH
Q 009719 184 MLGTRRLPF---PAFSFDIVHCSRCLIPFTAYNA--TYLIEVDRLLRPGGY-----LVISGPPVQWP-KQDKEWADLQAV 252 (527)
Q Consensus 184 v~dae~LPF---pD~SFDlV~cs~~l~hw~d~~~--~aL~Ei~RVLRPGG~-----lviS~pp~~~~-~~~~~w~~i~~l 252 (527)
+.|-...|. +++.||+|.||++|-..++..+ .-|+-+.+.|||+|. |++-.|..--. ..|..-++++++
T Consensus 89 qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy~~~~~l~~i 168 (219)
T PF11968_consen 89 QQDFMERPLPKNESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRYMTEERLREI 168 (219)
T ss_pred eeccccCCCCCCcccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhcccccCHHHHHHH
Confidence 345444444 4889999999999977776543 489999999999999 88877732111 122233455566
Q ss_pred HHhcceEEeee
Q 009719 253 ARALCYELIAV 263 (527)
Q Consensus 253 ~~~mcW~~~~~ 263 (527)
.++|.++.+..
T Consensus 169 m~~LGf~~~~~ 179 (219)
T PF11968_consen 169 MESLGFTRVKY 179 (219)
T ss_pred HHhCCcEEEEE
Confidence 67777765544
No 222
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=93.55 E-value=0.035 Score=57.14 Aligned_cols=115 Identities=13% Similarity=0.160 Sum_probs=65.7
Q ss_pred HHHHHHHHHhhhccCCCCeeeEeecCCCccchhhhccCCCeeEEEecCCCCC-CchhHhhhc------cc--cccccccC
Q 009719 356 RRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR------GL--IGVYHDWC 426 (527)
Q Consensus 356 ~~v~~Y~~~l~~~i~~~~iRnvmDm~ag~GgFaAaL~~~~VwvMnvvp~~~~-ntl~vi~eR------GL--iG~~hdwc 426 (527)
.....+.+.+...+..+ .+|+|+|||.|.++..|.+.-.=.-++++.|-. .-|..+.++ ++ .++..|-+
T Consensus 48 ~il~~~~~~ia~~~~~~--~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~ 125 (301)
T TIGR03438 48 AILERHADEIAAATGAG--CELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFT 125 (301)
T ss_pred HHHHHHHHHHHHhhCCC--CeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEccc
Confidence 33344444444444443 479999999999988886541002356777755 566666554 22 24445555
Q ss_pred CCCCCCCCcc----c-hhhhcCccccccCCCCCCCCCcccccceeecccccCCcEEEEe
Q 009719 427 EPFSTYPRTY----D-LIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 480 (527)
Q Consensus 427 e~fstYPrty----D-LiHa~~~fs~~~~~~~~~~rC~~~~illEmDRILRP~G~~iir 480 (527)
+.++ +|..+ + ++.....|.... .=....+|-++=+.|+|||.++|.
T Consensus 126 ~~~~-~~~~~~~~~~~~~~~gs~~~~~~-------~~e~~~~L~~i~~~L~pgG~~lig 176 (301)
T TIGR03438 126 QPLA-LPPEPAAGRRLGFFPGSTIGNFT-------PEEAVAFLRRIRQLLGPGGGLLIG 176 (301)
T ss_pred chhh-hhcccccCCeEEEEecccccCCC-------HHHHHHHHHHHHHhcCCCCEEEEe
Confidence 4432 23333 2 333333333221 122356899999999999999985
No 223
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=93.54 E-value=0.19 Score=51.26 Aligned_cols=74 Identities=15% Similarity=0.111 Sum_probs=48.2
Q ss_pred ccCcChHHHHHHHHHc----CCC--cEEeeccccCCCCCCCcccEEEec-------------Cccccccc----------
Q 009719 161 APRDSHKAQIQFALER----GIP--AFVAMLGTRRLPFPAFSFDIVHCS-------------RCLIPFTA---------- 211 (527)
Q Consensus 161 Ap~D~seaqvq~A~eR----g~p--a~~~v~dae~LPFpD~SFDlV~cs-------------~~l~hw~d---------- 211 (527)
...|.++.+++.|+++ +.. +.+..+|... +++++.||+|+|. .++.|-+.
T Consensus 142 ~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl 220 (284)
T TIGR00536 142 IAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFE-PLAGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGL 220 (284)
T ss_pred EEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhc-cCcCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHH
Confidence 3347788888888754 443 4566666533 5566689999985 11222110
Q ss_pred -ChHHHHHHHhhcccCCcEEEEecC
Q 009719 212 -YNATYLIEVDRLLRPGGYLVISGP 235 (527)
Q Consensus 212 -~~~~aL~Ei~RVLRPGG~lviS~p 235 (527)
.-..++.++.++|+|||++++-..
T Consensus 221 ~~~~~ii~~a~~~L~~gG~l~~e~g 245 (284)
T TIGR00536 221 NILRQIIELAPDYLKPNGFLVCEIG 245 (284)
T ss_pred HHHHHHHHHHHHhccCCCEEEEEEC
Confidence 112378899999999999999664
No 224
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=93.49 E-value=0.085 Score=42.63 Aligned_cols=94 Identities=21% Similarity=0.259 Sum_probs=55.4
Q ss_pred EeecCCCccc--hhhhccCCCeeEEEecCCCCCCchhHhhhcc-------ccccccccCCC-CCCCC-CccchhhhcCcc
Q 009719 377 IMDMNAFFGG--FAAALTSDPVWVMNVVPARKSSTLSVIYDRG-------LIGVYHDWCEP-FSTYP-RTYDLIHVSGIE 445 (527)
Q Consensus 377 vmDm~ag~Gg--FaAaL~~~~VwvMnvvp~~~~ntl~vi~eRG-------LiG~~hdwce~-fstYP-rtyDLiHa~~~f 445 (527)
++|.|||.|. +.+.+......+..+-+.. ..+...-.+. +-....+.... ++.-. .+||++ +....
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~ 128 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRGAYVVGVDLSP--EMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLV 128 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCCceEEEEeCCH--HHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeeee
Confidence 9999999998 6666666554444422111 2222211111 12233333321 22212 389999 76555
Q ss_pred ccccCCCCCCCCCcccccceeecccccCCcEEEEeCC
Q 009719 446 SLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS 482 (527)
Q Consensus 446 s~~~~~~~~~~rC~~~~illEmDRILRP~G~~iird~ 482 (527)
..+. . ...++-|+-|+|+|+|.+++.+.
T Consensus 129 ~~~~------~---~~~~~~~~~~~l~~~g~~~~~~~ 156 (257)
T COG0500 129 LHLL------P---PAKALRELLRVLKPGGRLVLSDL 156 (257)
T ss_pred hhcC------C---HHHHHHHHHHhcCCCcEEEEEec
Confidence 5443 1 67899999999999999999864
No 225
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=93.44 E-value=0.027 Score=58.36 Aligned_cols=125 Identities=19% Similarity=0.237 Sum_probs=81.2
Q ss_pred CccccchhhH-HHHHHHHHHHHHhhh-ccCCCCeeeEeecCCCccchhhhccCC-CeeEEEecCCCCC--CchhHhhhcc
Q 009719 343 GYDVFEADSR-RWRRRVAYYKNTLNV-KLGTPAIRNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS--STLSVIYDRG 417 (527)
Q Consensus 343 ~~~~f~~d~~-~W~~~v~~Y~~~l~~-~i~~~~iRnvmDm~ag~GgFaAaL~~~-~VwvMnvvp~~~~--ntl~vi~eRG 417 (527)
|-.-|+.++. .=..+..++...+.. .|+.| -.|||+|||-|+++-.+... +|-|+.|--+.+. .--+-|-++|
T Consensus 42 scayf~~~~~tL~eAQ~~k~~~~~~kl~L~~G--~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~g 119 (283)
T COG2230 42 SCAYFEDPDMTLEEAQRAKLDLILEKLGLKPG--MTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARG 119 (283)
T ss_pred eeEEeCCCCCChHHHHHHHHHHHHHhcCCCCC--CEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcC
Confidence 4444555542 333333333322221 25555 47999999999999888655 7877766443322 2224477799
Q ss_pred cc----ccccccCCCCCCCCCccchhhhcCccccccCCCCCCCCCcccccceeecccccCCcEEEEe
Q 009719 418 LI----GVYHDWCEPFSTYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 480 (527)
Q Consensus 418 Li----G~~hdwce~fstYPrtyDLiHa~~~fs~~~~~~~~~~rC~~~~illEmDRILRP~G~~iir 480 (527)
|- =.++||.+. .-.||=|=+-+.|-+.. .=+..+++-=+.++|+|||-+++-
T Consensus 120 l~~~v~v~l~d~rd~----~e~fDrIvSvgmfEhvg-------~~~~~~ff~~~~~~L~~~G~~llh 175 (283)
T COG2230 120 LEDNVEVRLQDYRDF----EEPFDRIVSVGMFEHVG-------KENYDDFFKKVYALLKPGGRMLLH 175 (283)
T ss_pred CCcccEEEecccccc----ccccceeeehhhHHHhC-------cccHHHHHHHHHhhcCCCceEEEE
Confidence 86 457888754 23388888888887653 234578888899999999999886
No 226
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=93.44 E-value=0.13 Score=48.20 Aligned_cols=124 Identities=9% Similarity=0.036 Sum_probs=72.3
Q ss_pred hhccccccccCCeeEEeeccCcChHHHHHHHHHcCC---CcEEeeccccCCCCCCCcccEEEecCcccccccChHHHHHH
Q 009719 143 VASFGGSMLSENILTLSFAPRDSHKAQIQFALERGI---PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIE 219 (527)
Q Consensus 143 vgsfga~Ll~r~V~~msiAp~D~seaqvq~A~eRg~---pa~~~v~dae~LPFpD~SFDlV~cs~~l~hw~d~~~~aL~E 219 (527)
.|.++..|++++..+..+ |.++.+++.++++.. ...+..+|+..+++++..||.|++..=. |.. .. .+..
T Consensus 24 ~G~lt~~l~~~~~~v~~v---E~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~d~vi~n~Py-~~~--~~-~i~~ 96 (169)
T smart00650 24 KGALTEELLERAARVTAI---EIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQPYKVVGNLPY-NIS--TP-ILFK 96 (169)
T ss_pred ccHHHHHHHhcCCeEEEE---ECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCCCEEEECCCc-ccH--HH-HHHH
Confidence 566667777775333333 667788888877632 3567788999999998889999987432 322 22 3333
Q ss_pred Hhh--cccCCcEEEEecCCC----CCCCchhHHHHHHHHHHhcc-eEEeeeecceEEEeCCC
Q 009719 220 VDR--LLRPGGYLVISGPPV----QWPKQDKEWADLQAVARALC-YELIAVDGNTVIWKKPV 274 (527)
Q Consensus 220 i~R--VLRPGG~lviS~pp~----~~~~~~~~w~~i~~l~~~mc-W~~~~~~~~v~iwrKp~ 274 (527)
+.. -+.++|.|++---.. ..+ ..+.|..+.-++..+| |+.+-+-..-.||=+|.
T Consensus 97 ~l~~~~~~~~~~l~~q~e~a~rl~~~~-~~~~y~~lsv~~~~~~~~~~~~~v~~~~F~P~Pk 157 (169)
T smart00650 97 LLEEPPAFRDAVLMVQKEVARRLAAKP-GSKDYGRLSVLLQPYFDVKILFKVPPEAFRPPPK 157 (169)
T ss_pred HHhcCCCcceEEEEEEHHHhHHhcCCC-CCCcccHHHHHHHHHeeEEEEEEEChhhCCCCCC
Confidence 332 255899998854311 111 1233445555555444 55555544445555544
No 227
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=93.25 E-value=0.12 Score=54.12 Aligned_cols=68 Identities=29% Similarity=0.453 Sum_probs=44.0
Q ss_pred cChHHHHHHHHHc----CCCcEEeeccccCCCCCC-CcccEEEecCcccccccChHHHHHHHhhcccCCcEEEEecC
Q 009719 164 DSHKAQIQFALER----GIPAFVAMLGTRRLPFPA-FSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 235 (527)
Q Consensus 164 D~seaqvq~A~eR----g~pa~~~v~dae~LPFpD-~SFDlV~cs~~l~hw~d~~~~aL~Ei~RVLRPGG~lviS~p 235 (527)
|..+.-++.|++. +++..........+.++. +.||+|+|+- |-+ .-..+..++.|.|||||++++|+-
T Consensus 192 DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANI-LA~---vl~~La~~~~~~lkpgg~lIlSGI 264 (300)
T COG2264 192 DIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANI-LAE---VLVELAPDIKRLLKPGGRLILSGI 264 (300)
T ss_pred cCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEehh-hHH---HHHHHHHHHHHHcCCCceEEEEee
Confidence 5555566666643 555311111223344555 5999999985 322 223488999999999999999994
No 228
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=93.21 E-value=0.033 Score=54.18 Aligned_cols=124 Identities=15% Similarity=0.192 Sum_probs=71.5
Q ss_pred eeEeecCCCccchhhhc--cCCCeeEEEecCCCC--CCchhHhhhccccccccccCCCCCC----C-CCccchhhhcCcc
Q 009719 375 RNIMDMNAFFGGFAAAL--TSDPVWVMNVVPARK--SSTLSVIYDRGLIGVYHDWCEPFST----Y-PRTYDLIHVSGIE 445 (527)
Q Consensus 375 RnvmDm~ag~GgFaAaL--~~~~VwvMnvvp~~~--~ntl~vi~eRGLiG~~hdwce~fst----Y-PrtyDLiHa~~~f 445 (527)
..++|+|||.|.|.+++ ...+.-++-|-.... ...+.-+..+||--+.--.+.+... . |.+.|-||-. |
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~--F 96 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYIN--F 96 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEE--S
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEe--C
Confidence 38999999999999988 333443333333322 2456667777874333333444321 2 3677777653 4
Q ss_pred c-cccCCCCCCCCCcc-cccceeecccccCCcEEEEe-CCHHHHHHHHHHHhcC--CceeE
Q 009719 446 S-LIKNPGSNKNSCSL-VDLMVEMDRMLRPEGTVVVR-DSPEVIDKVSRIANTV--RWTAA 501 (527)
Q Consensus 446 s-~~~~~~~~~~rC~~-~~illEmDRILRP~G~~iir-d~~~~~~~i~~i~~~l--~W~~~ 501 (527)
. .|-. ....+|.-+ ...|-++-|+|+|||.+.+. |..++.+.+.+.+... .++..
T Consensus 97 PDPWpK-~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~y~~~~~~~~~~~~~~f~~~ 156 (195)
T PF02390_consen 97 PDPWPK-KRHHKRRLVNPEFLELLARVLKPGGELYFATDVEEYAEWMLEQFEESHPGFENI 156 (195)
T ss_dssp -----S-GGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HHHHHHHHHHHHHHSTTEEEE
T ss_pred CCCCcc-cchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhcCcCeEEc
Confidence 2 2320 001123333 47888999999999999887 5666777777776653 55544
No 229
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=93.20 E-value=0.15 Score=50.67 Aligned_cols=81 Identities=20% Similarity=0.217 Sum_probs=51.5
Q ss_pred ccccccCCeeEEeeccCcChHHHHHHHH-HcCC-------C---------cEEeeccccCCCCCC-CcccEEE--ecCcc
Q 009719 147 GGSMLSENILTLSFAPRDSHKAQIQFAL-ERGI-------P---------AFVAMLGTRRLPFPA-FSFDIVH--CSRCL 206 (527)
Q Consensus 147 ga~Ll~r~V~~msiAp~D~seaqvq~A~-eRg~-------p---------a~~~v~dae~LPFpD-~SFDlV~--cs~~l 206 (527)
..+|.++|-.++.+ |+++.-++.|. +++. . +.+.++|.-.|+-.+ +.||+|. .++|.
T Consensus 52 ~~~La~~G~~VvGv---Dls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~g~fD~iyDr~~l~A 128 (218)
T PF05724_consen 52 MLWLAEQGHDVVGV---DLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDVGKFDLIYDRTFLCA 128 (218)
T ss_dssp HHHHHHTTEEEEEE---ES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCHHSEEEEEECSSTTT
T ss_pred HHHHHHCCCeEEEE---ecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhhcCCceEEEEeccccc
Confidence 44677887655555 77888888774 4443 1 134567776766544 4899998 34454
Q ss_pred cccccChHHHHHHHhhcccCCcEEE
Q 009719 207 IPFTAYNATYLIEVDRLLRPGGYLV 231 (527)
Q Consensus 207 ~hw~d~~~~aL~Ei~RVLRPGG~lv 231 (527)
+|-... ..+..-+.++|||||.++
T Consensus 129 lpp~~R-~~Ya~~l~~ll~p~g~~l 152 (218)
T PF05724_consen 129 LPPEMR-ERYAQQLASLLKPGGRGL 152 (218)
T ss_dssp S-GGGH-HHHHHHHHHCEEEEEEEE
T ss_pred CCHHHH-HHHHHHHHHHhCCCCcEE
Confidence 553222 349999999999999943
No 230
>PHA03411 putative methyltransferase; Provisional
Probab=93.20 E-value=0.21 Score=51.79 Aligned_cols=77 Identities=13% Similarity=0.027 Sum_probs=53.2
Q ss_pred eccCcChHHHHHHHHHcCCCcEEeeccccCCCCCCCcccEEEecCcccccccC-------------------hHHHHHHH
Q 009719 160 FAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAY-------------------NATYLIEV 220 (527)
Q Consensus 160 iAp~D~seaqvq~A~eRg~pa~~~v~dae~LPFpD~SFDlV~cs~~l~hw~d~-------------------~~~aL~Ei 220 (527)
+...|.++.+++.|+++...+.+..+|...++. +++||+|++.-.+.|.... -...++.+
T Consensus 91 V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~~-~~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v 169 (279)
T PHA03411 91 IVCVELNPEFARIGKRLLPEAEWITSDVFEFES-NEKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADV 169 (279)
T ss_pred EEEEECCHHHHHHHHHhCcCCEEEECchhhhcc-cCCCcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhh
Confidence 334477889999998864446677788776653 5789999997766653221 12367888
Q ss_pred hhcccCCcEEEE--ecCCC
Q 009719 221 DRLLRPGGYLVI--SGPPV 237 (527)
Q Consensus 221 ~RVLRPGG~lvi--S~pp~ 237 (527)
.++|+|+|.+.+ ++.|.
T Consensus 170 ~~~L~p~G~~~~~yss~~~ 188 (279)
T PHA03411 170 GYFIVPTGSAGFAYSGRPY 188 (279)
T ss_pred HheecCCceEEEEEecccc
Confidence 999999998765 44444
No 231
>PRK07402 precorrin-6B methylase; Provisional
Probab=93.20 E-value=0.15 Score=48.72 Aligned_cols=67 Identities=21% Similarity=0.169 Sum_probs=42.7
Q ss_pred cChHHHHHHHHHc----CCC-cEEeeccccC-CCCCCCcccEEEecCcccccccChHHHHHHHhhcccCCcEEEEecC
Q 009719 164 DSHKAQIQFALER----GIP-AFVAMLGTRR-LPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 235 (527)
Q Consensus 164 D~seaqvq~A~eR----g~p-a~~~v~dae~-LPFpD~SFDlV~cs~~l~hw~d~~~~aL~Ei~RVLRPGG~lviS~p 235 (527)
|.++.+++.|+++ ++. +.+..+|+.. ++.-...+|.++... ......++.++.|+|+|||+|++..+
T Consensus 71 D~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~~~~-----~~~~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 71 ERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRVCIEG-----GRPIKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred eCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCCEEEEEC-----CcCHHHHHHHHHHhcCCCeEEEEEee
Confidence 6667777777653 443 4455566543 333334467765421 12223499999999999999999876
No 232
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=93.15 E-value=0.11 Score=50.53 Aligned_cols=82 Identities=22% Similarity=0.301 Sum_probs=49.8
Q ss_pred cCCeeEEeeccCcChHHHHHHHHHcCCC-cEEeeccccC-CC--CCCCcccEEEecCcccccccChH--------HHHHH
Q 009719 152 SENILTLSFAPRDSHKAQIQFALERGIP-AFVAMLGTRR-LP--FPAFSFDIVHCSRCLIPFTAYNA--------TYLIE 219 (527)
Q Consensus 152 ~r~V~~msiAp~D~seaqvq~A~eRg~p-a~~~v~dae~-LP--FpD~SFDlV~cs~~l~hw~d~~~--------~aL~E 219 (527)
+.+++++++...-.. ...+.+.+++++ +.+..+|+.. |+ ++++++|.|+..+- -+|+.... .+|.+
T Consensus 41 d~n~iGiE~~~~~v~-~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FP-DPWpK~rH~krRl~~~~fl~~ 118 (195)
T PF02390_consen 41 DINFIGIEIRKKRVA-KALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFP-DPWPKKRHHKRRLVNPEFLEL 118 (195)
T ss_dssp TSEEEEEES-HHHHH-HHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES------SGGGGGGSTTSHHHHHH
T ss_pred CCCEEEEecchHHHH-HHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCC-CCCcccchhhhhcCCchHHHH
Confidence 456666666443222 223344455765 4566677766 43 56899999997654 46655322 39999
Q ss_pred HhhcccCCcEEEEecC
Q 009719 220 VDRLLRPGGYLVISGP 235 (527)
Q Consensus 220 i~RVLRPGG~lviS~p 235 (527)
+.|+|+|||.+.+.+-
T Consensus 119 ~~~~L~~gG~l~~~TD 134 (195)
T PF02390_consen 119 LARVLKPGGELYFATD 134 (195)
T ss_dssp HHHHEEEEEEEEEEES
T ss_pred HHHHcCCCCEEEEEeC
Confidence 9999999999999763
No 233
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=92.77 E-value=0.58 Score=51.15 Aligned_cols=93 Identities=16% Similarity=0.114 Sum_probs=55.9
Q ss_pred cCcChHHHHHHHHHc----CCCcEEeeccccCCCCC-CCcccEEEecCcccccc--------------------cCh---
Q 009719 162 PRDSHKAQIQFALER----GIPAFVAMLGTRRLPFP-AFSFDIVHCSRCLIPFT--------------------AYN--- 213 (527)
Q Consensus 162 p~D~seaqvq~A~eR----g~pa~~~v~dae~LPFp-D~SFDlV~cs~~l~hw~--------------------d~~--- 213 (527)
..|.++.+++.|+++ +..+.+..+|.....++ +++||+|+|+-=.+.-. +++
T Consensus 280 AVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~ 359 (423)
T PRK14966 280 ASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSC 359 (423)
T ss_pred EEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHH
Confidence 347788899888764 44556677776443343 46899999963111000 000
Q ss_pred -HHHHHHHhhcccCCcEEEEecCCCCCCCchhHHHHHHHHHHhcceEEe
Q 009719 214 -ATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELI 261 (527)
Q Consensus 214 -~~aL~Ei~RVLRPGG~lviS~pp~~~~~~~~~w~~i~~l~~~mcW~~~ 261 (527)
...+.++.+.|+|||++++.... + .-+.++++.+...|..+
T Consensus 360 yr~Ii~~a~~~LkpgG~lilEiG~-~------Q~e~V~~ll~~~Gf~~v 401 (423)
T PRK14966 360 IRTLAQGAPDRLAEGGFLLLEHGF-D------QGAAVRGVLAENGFSGV 401 (423)
T ss_pred HHHHHHHHHHhcCCCcEEEEEECc-c------HHHHHHHHHHHCCCcEE
Confidence 12566677899999999886542 1 12456666666556443
No 234
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=92.56 E-value=0.31 Score=48.95 Aligned_cols=81 Identities=19% Similarity=0.203 Sum_probs=57.8
Q ss_pred CCeeEEeeccCcChHHHHHHHHHcCC-CcEEeeccccCC-C--CCCCcccEEEecCcccccccChH--------HHHHHH
Q 009719 153 ENILTLSFAPRDSHKAQIQFALERGI-PAFVAMLGTRRL-P--FPAFSFDIVHCSRCLIPFTAYNA--------TYLIEV 220 (527)
Q Consensus 153 r~V~~msiAp~D~seaqvq~A~eRg~-pa~~~v~dae~L-P--FpD~SFDlV~cs~~l~hw~d~~~--------~aL~Ei 220 (527)
.+.+++++-.. .-...++.+.+.++ .+.+...|+..+ + ++++|.|.|...+- -+|+...+ .+|.++
T Consensus 73 ~nfiGiEi~~~-~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP-DPWpKkRH~KRRl~~~~fl~~~ 150 (227)
T COG0220 73 KNFLGIEIRVP-GVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFP-DPWPKKRHHKRRLTQPEFLKLY 150 (227)
T ss_pred CCEEEEEEehH-HHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECC-CCCCCccccccccCCHHHHHHH
Confidence 35666666442 23445666677888 677777787553 4 35669999997765 47765433 399999
Q ss_pred hhcccCCcEEEEecC
Q 009719 221 DRLLRPGGYLVISGP 235 (527)
Q Consensus 221 ~RVLRPGG~lviS~p 235 (527)
.|+|||||.|.+.+-
T Consensus 151 a~~Lk~gG~l~~aTD 165 (227)
T COG0220 151 ARKLKPGGVLHFATD 165 (227)
T ss_pred HHHccCCCEEEEEec
Confidence 999999999999874
No 235
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=92.44 E-value=0.082 Score=54.28 Aligned_cols=90 Identities=19% Similarity=0.398 Sum_probs=61.3
Q ss_pred CeeeEeecCCCccchhhhccCCCeeEEEecCCCCC-CchhHhhhccc--cccccccCCCCCCCCCccchhhhcCcccccc
Q 009719 373 AIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGL--IGVYHDWCEPFSTYPRTYDLIHVSGIESLIK 449 (527)
Q Consensus 373 ~iRnvmDm~ag~GgFaAaL~~~~VwvMnvvp~~~~-ntl~vi~eRGL--iG~~hdwce~fstYPrtyDLiHa~~~fs~~~ 449 (527)
+..++||+|||-|+--+.|... .=+|.-++.. .-.--.-+||+ +++ .||-+. +..||+|-|-.++.
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~---f~~v~aTE~S~~Mr~rL~~kg~~vl~~-~~w~~~----~~~fDvIscLNvLD--- 162 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPL---FKEVYATEASPPMRWRLSKKGFTVLDI-DDWQQT----DFKFDVISCLNVLD--- 162 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhh---cceEEeecCCHHHHHHHHhCCCeEEeh-hhhhcc----CCceEEEeehhhhh---
Confidence 5778999999999988877431 1123333333 11223346886 443 347643 56799999876664
Q ss_pred CCCCCCCCCccc-ccceeecccccCCcEEEEe
Q 009719 450 NPGSNKNSCSLV-DLMVEMDRMLRPEGTVVVR 480 (527)
Q Consensus 450 ~~~~~~~rC~~~-~illEmDRILRP~G~~iir 480 (527)
||.-. .+|-+|-+-|+|+|.+|+.
T Consensus 163 -------Rc~~P~~LL~~i~~~l~p~G~lilA 187 (265)
T PF05219_consen 163 -------RCDRPLTLLRDIRRALKPNGRLILA 187 (265)
T ss_pred -------ccCCHHHHHHHHHHHhCCCCEEEEE
Confidence 88754 7788999999999999996
No 236
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=92.35 E-value=0.17 Score=51.35 Aligned_cols=75 Identities=12% Similarity=0.091 Sum_probs=46.8
Q ss_pred eccCcChHHHHHHHHHcC---------CCcEEeeccccC-CCCCCCcccEEEecCcccccccC----hHHHHHHHhhccc
Q 009719 160 FAPRDSHKAQIQFALERG---------IPAFVAMLGTRR-LPFPAFSFDIVHCSRCLIPFTAY----NATYLIEVDRLLR 225 (527)
Q Consensus 160 iAp~D~seaqvq~A~eRg---------~pa~~~v~dae~-LPFpD~SFDlV~cs~~l~hw~d~----~~~aL~Ei~RVLR 225 (527)
+...|.++++++.|++.- ....+..+|+.. |.-.+++||+|++.... +.... ...++..+.+.|+
T Consensus 99 v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~D~~~-~~~~~~~l~~~ef~~~~~~~L~ 177 (270)
T TIGR00417 99 ATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIVDSTD-PVGPAETLFTKEFYELLKKALN 177 (270)
T ss_pred EEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEEeCCC-CCCcccchhHHHHHHHHHHHhC
Confidence 333456677888887641 113344455422 33346899999987542 22221 1237899999999
Q ss_pred CCcEEEEecC
Q 009719 226 PGGYLVISGP 235 (527)
Q Consensus 226 PGG~lviS~p 235 (527)
|||.+++...
T Consensus 178 pgG~lv~~~~ 187 (270)
T TIGR00417 178 EDGIFVAQSE 187 (270)
T ss_pred CCcEEEEcCC
Confidence 9999998754
No 237
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=92.29 E-value=0.32 Score=48.15 Aligned_cols=92 Identities=25% Similarity=0.348 Sum_probs=61.7
Q ss_pred hhccccccc----cCCeeEEeeccCcChHHHHHHHH----HcCCC--cEEeeccccCCCCCCCcccEEEec-----Cccc
Q 009719 143 VASFGGSML----SENILTLSFAPRDSHKAQIQFAL----ERGIP--AFVAMLGTRRLPFPAFSFDIVHCS-----RCLI 207 (527)
Q Consensus 143 vgsfga~Ll----~r~V~~msiAp~D~seaqvq~A~----eRg~p--a~~~v~dae~LPFpD~SFDlV~cs-----~~l~ 207 (527)
.|+--++|| +.+... .+...|.+++.|++|. .++.+ +.+.++|...--|-.+.||+|+=- -.|+
T Consensus 74 LGtGNG~~L~~L~~egf~~-~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DAisLs 152 (227)
T KOG1271|consen 74 LGTGNGHLLFQLAKEGFQS-KLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLDAISLS 152 (227)
T ss_pred ccCCchHHHHHHHHhcCCC-CccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCceeeeecC
Confidence 455555554 334331 1667788888888775 34666 678888876668888999999722 1222
Q ss_pred cc--ccChHHHHHHHhhcccCCcEEEEecC
Q 009719 208 PF--TAYNATYLIEVDRLLRPGGYLVISGP 235 (527)
Q Consensus 208 hw--~d~~~~aL~Ei~RVLRPGG~lviS~p 235 (527)
+- ......++.-+.+.|+|||.|+|+.-
T Consensus 153 ~d~~~~r~~~Y~d~v~~ll~~~gifvItSC 182 (227)
T KOG1271|consen 153 PDGPVGRLVVYLDSVEKLLSPGGIFVITSC 182 (227)
T ss_pred CCCcccceeeehhhHhhccCCCcEEEEEec
Confidence 21 12223488899999999999999876
No 238
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=92.29 E-value=0.048 Score=56.75 Aligned_cols=118 Identities=14% Similarity=0.101 Sum_probs=58.6
Q ss_pred eeEeecCCCccchhhhccCCCeeEEEecCCCCC-CchhH----hhhccccc--cc-cccCCCCCCCCCccchhhhcCccc
Q 009719 375 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSV----IYDRGLIG--VY-HDWCEPFSTYPRTYDLIHVSGIES 446 (527)
Q Consensus 375 RnvmDm~ag~GgFaAaL~~~~VwvMnvvp~~~~-ntl~v----i~eRGLiG--~~-hdwce~fstYPrtyDLiHa~~~fs 446 (527)
..|||.+||+|+|+..+.....- |+-.|.. ..+.. +-.-|+-. ++ .|-. .++.-..+||+|=++--|.
T Consensus 184 ~~vLDp~cGtG~~lieaa~~~~~---v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~-~l~~~~~~~D~Iv~dPPyg 259 (329)
T TIGR01177 184 DRVLDPFCGTGGFLIEAGLMGAK---VIGCDIDWKMVAGARINLEHYGIEDFFVKRGDAT-KLPLSSESVDAIATDPPYG 259 (329)
T ss_pred CEEEECCCCCCHHHHHHHHhCCe---EEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchh-cCCcccCCCCEEEECCCCc
Confidence 37999999999995443222222 2222322 22221 11224432 11 1211 1221136899888763332
Q ss_pred cccCCCCCCCCCcccccceeecccccCCcEEEEeCCHHHHHHHHHHHhcCCc
Q 009719 447 LIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRIANTVRW 498 (527)
Q Consensus 447 ~~~~~~~~~~rC~~~~illEmDRILRP~G~~iird~~~~~~~i~~i~~~l~W 498 (527)
.-..............+|-|+-|+|+|||++++--..+. .++++++.--|
T Consensus 260 ~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~--~~~~~~~~~g~ 309 (329)
T TIGR01177 260 RSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTRI--DLESLAEDAFR 309 (329)
T ss_pred CcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCCC--CHHHHHhhcCc
Confidence 111000000112346889999999999999876543221 34455666666
No 239
>PRK01581 speE spermidine synthase; Validated
Probab=92.24 E-value=0.21 Score=53.71 Aligned_cols=76 Identities=17% Similarity=0.206 Sum_probs=50.2
Q ss_pred eeccCcChHHHHHHHHHc--------C----CCcEEeeccccC-CCCCCCcccEEEecCccccccc-----ChHHHHHHH
Q 009719 159 SFAPRDSHKAQIQFALER--------G----IPAFVAMLGTRR-LPFPAFSFDIVHCSRCLIPFTA-----YNATYLIEV 220 (527)
Q Consensus 159 siAp~D~seaqvq~A~eR--------g----~pa~~~v~dae~-LPFpD~SFDlV~cs~~l~hw~d-----~~~~aL~Ei 220 (527)
.+...|+++++++.|++. + -.+.+..+|+.. |+-.++.||+|++... .+... ....++..+
T Consensus 176 ~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YDVIIvDl~-DP~~~~~~~LyT~EFy~~~ 254 (374)
T PRK01581 176 HVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYDVIIIDFP-DPATELLSTLYTSELFARI 254 (374)
T ss_pred eEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCccEEEEcCC-CccccchhhhhHHHHHHHH
Confidence 344446778999999862 1 124455667654 5556788999998742 12111 112388999
Q ss_pred hhcccCCcEEEEecC
Q 009719 221 DRLLRPGGYLVISGP 235 (527)
Q Consensus 221 ~RVLRPGG~lviS~p 235 (527)
.|.|+|||.|+....
T Consensus 255 ~~~LkPgGV~V~Qs~ 269 (374)
T PRK01581 255 ATFLTEDGAFVCQSN 269 (374)
T ss_pred HHhcCCCcEEEEecC
Confidence 999999999988643
No 240
>PRK04457 spermidine synthase; Provisional
Probab=92.17 E-value=0.17 Score=51.39 Aligned_cols=71 Identities=11% Similarity=0.104 Sum_probs=45.7
Q ss_pred CcChHHHHHHHHHc-CC-----CcEEeeccccC-CCCCCCcccEEEecCcc-ccccc--ChHHHHHHHhhcccCCcEEEE
Q 009719 163 RDSHKAQIQFALER-GI-----PAFVAMLGTRR-LPFPAFSFDIVHCSRCL-IPFTA--YNATYLIEVDRLLRPGGYLVI 232 (527)
Q Consensus 163 ~D~seaqvq~A~eR-g~-----pa~~~v~dae~-LPFpD~SFDlV~cs~~l-~hw~d--~~~~aL~Ei~RVLRPGG~lvi 232 (527)
.|..+++++.|++. +. ...+..+|+.. ++-..++||+|++...- ...+. ....++.++.++|+|||.|++
T Consensus 96 VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvi 175 (262)
T PRK04457 96 VEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVV 175 (262)
T ss_pred EECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEE
Confidence 36677899999876 22 13456667532 33334689999975310 11111 113499999999999999998
Q ss_pred e
Q 009719 233 S 233 (527)
Q Consensus 233 S 233 (527)
-
T Consensus 176 n 176 (262)
T PRK04457 176 N 176 (262)
T ss_pred E
Confidence 5
No 241
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=92.16 E-value=0.13 Score=59.29 Aligned_cols=93 Identities=18% Similarity=0.216 Sum_probs=57.8
Q ss_pred hhccccccccCCeeEEeeccCcChHHHHHHHHHc----CCC---cEEeeccccC-CCCCCCcccEEEecC-ccc------
Q 009719 143 VASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIP---AFVAMLGTRR-LPFPAFSFDIVHCSR-CLI------ 207 (527)
Q Consensus 143 vgsfga~Ll~r~V~~msiAp~D~seaqvq~A~eR----g~p---a~~~v~dae~-LPFpD~SFDlV~cs~-~l~------ 207 (527)
+|.|+-++...|.. ++...|.++.+++.|++. |+. ..+..+|+.. |.-..++||+|++.- .+.
T Consensus 549 tG~~sl~aa~~Ga~--~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP~f~~~~~~~ 626 (702)
T PRK11783 549 TGTASVHAALGGAK--STTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPPTFSNSKRME 626 (702)
T ss_pred CCHHHHHHHHCCCC--EEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECCCCCCCCCccc
Confidence 67777777776653 233348888888888754 443 4566677533 221157899999851 000
Q ss_pred c-c--ccChHHHHHHHhhcccCCcEEEEecCCC
Q 009719 208 P-F--TAYNATYLIEVDRLLRPGGYLVISGPPV 237 (527)
Q Consensus 208 h-w--~d~~~~aL~Ei~RVLRPGG~lviS~pp~ 237 (527)
. + ..+-..++..+.++|+|||.++++....
T Consensus 627 ~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~ 659 (702)
T PRK11783 627 DSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKR 659 (702)
T ss_pred hhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence 0 0 0111237788899999999999977543
No 242
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=92.07 E-value=0.0093 Score=51.35 Aligned_cols=99 Identities=19% Similarity=0.244 Sum_probs=51.8
Q ss_pred eEeecCCCccchhhhccCCCeeEEEecCCCCC-CchhHhh----hccc-------cccccccCCCCCCCCCccchhhhcC
Q 009719 376 NIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIY----DRGL-------IGVYHDWCEPFSTYPRTYDLIHVSG 443 (527)
Q Consensus 376 nvmDm~ag~GgFaAaL~~~~VwvMnvvp~~~~-ntl~vi~----eRGL-------iG~~hdwce~fstYPrtyDLiHa~~ 443 (527)
.|||.+||.|.|+.++...- .-++.=.+-. ..+.+.- ..|+ .|-+.+..+.++ ...||+|=++-
T Consensus 3 ~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~--~~~~D~Iv~np 78 (117)
T PF13659_consen 3 RVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLP--DGKFDLIVTNP 78 (117)
T ss_dssp EEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCT--TT-EEEEEE--
T ss_pred EEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhcc--CceeEEEEECC
Confidence 69999999999998886543 1122222211 1111111 0111 222223332332 37899998887
Q ss_pred ccccccCCCCCCCCCcccccceeecccccCCcEEEE
Q 009719 444 IESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVV 479 (527)
Q Consensus 444 ~fs~~~~~~~~~~rC~~~~illEmDRILRP~G~~ii 479 (527)
-|........... =....++-++.|+|||||.+++
T Consensus 79 P~~~~~~~~~~~~-~~~~~~~~~~~~~L~~gG~~~~ 113 (117)
T PF13659_consen 79 PYGPRSGDKAALR-RLYSRFLEAAARLLKPGGVLVF 113 (117)
T ss_dssp STTSBTT----GG-CHHHHHHHHHHHHEEEEEEEEE
T ss_pred CCccccccchhhH-HHHHHHHHHHHHHcCCCeEEEE
Confidence 7764320001111 1345778899999999999876
No 243
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=92.06 E-value=0.099 Score=50.46 Aligned_cols=42 Identities=26% Similarity=0.431 Sum_probs=34.1
Q ss_pred CCcccEEEecCcccccc-----c---C--hHHHHHHHhhcccCCcEEEEecC
Q 009719 194 AFSFDIVHCSRCLIPFT-----A---Y--NATYLIEVDRLLRPGGYLVISGP 235 (527)
Q Consensus 194 D~SFDlV~cs~~l~hw~-----d---~--~~~aL~Ei~RVLRPGG~lviS~p 235 (527)
.++||.+.|..++.|.. | + +-.+++++.|||||||.|+++.|
T Consensus 61 ~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vP 112 (177)
T PF03269_consen 61 AGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVP 112 (177)
T ss_pred hccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEee
Confidence 47899999998888852 1 1 12489999999999999999998
No 244
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=91.91 E-value=0.21 Score=51.48 Aligned_cols=43 Identities=28% Similarity=0.472 Sum_probs=37.5
Q ss_pred CCCcccEEEecCcccccccChH-HHHHHHhhcccCCcEEEEecC
Q 009719 193 PAFSFDIVHCSRCLIPFTAYNA-TYLIEVDRLLRPGGYLVISGP 235 (527)
Q Consensus 193 pD~SFDlV~cs~~l~hw~d~~~-~aL~Ei~RVLRPGG~lviS~p 235 (527)
..+-||+|.|--+++.+....+ .++..++..|+|||+|++...
T Consensus 199 ~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~s 242 (268)
T COG1352 199 FLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGHS 242 (268)
T ss_pred ccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEccC
Confidence 5577999999999999977654 599999999999999999654
No 245
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=91.72 E-value=0.35 Score=46.35 Aligned_cols=72 Identities=22% Similarity=0.354 Sum_probs=47.7
Q ss_pred eccCcChHHHHHHHHHc----CCC--cEEeeccccCCCCCCCcccEEEecCcccccccCh----------HHHHHHHhhc
Q 009719 160 FAPRDSHKAQIQFALER----GIP--AFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYN----------ATYLIEVDRL 223 (527)
Q Consensus 160 iAp~D~seaqvq~A~eR----g~p--a~~~v~dae~LPFpD~SFDlV~cs~~l~hw~d~~----------~~aL~Ei~RV 223 (527)
+...|..+.+++.|++. |+. +.+.+.|+..||+.+++||.|+|.- +|-... ..++.|+.||
T Consensus 64 ~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~~~~~~d~IvtnP---PyG~r~~~~~~~~~ly~~~~~~~~~~ 140 (179)
T PF01170_consen 64 IIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELPLPDGSVDAIVTNP---PYGRRLGSKKDLEKLYRQFLRELKRV 140 (179)
T ss_dssp EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGGGTTSBSCEEEEE-----STTSHCHHHHHHHHHHHHHHHHHCH
T ss_pred EEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcccccCCCCEEEECc---chhhhccCHHHHHHHHHHHHHHHHHH
Confidence 33447777888777654 443 4567789999999999999999872 332211 1278999999
Q ss_pred ccCCcEEEEec
Q 009719 224 LRPGGYLVISG 234 (527)
Q Consensus 224 LRPGG~lviS~ 234 (527)
|+|...++++.
T Consensus 141 l~~~~v~l~~~ 151 (179)
T PF01170_consen 141 LKPRAVFLTTS 151 (179)
T ss_dssp STTCEEEEEES
T ss_pred CCCCEEEEEEC
Confidence 99955555554
No 246
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=91.71 E-value=0.35 Score=49.00 Aligned_cols=106 Identities=12% Similarity=0.181 Sum_probs=53.1
Q ss_pred cCCCCeeeEeecCCCccchhhhccCCC-eeEEEecCCCCC-CchhHhhhc-----c-c----cccc-cccCCCCCCCCCc
Q 009719 369 LGTPAIRNIMDMNAFFGGFAAALTSDP-VWVMNVVPARKS-STLSVIYDR-----G-L----IGVY-HDWCEPFSTYPRT 435 (527)
Q Consensus 369 i~~~~iRnvmDm~ag~GgFaAaL~~~~-VwvMnvvp~~~~-ntl~vi~eR-----G-L----iG~~-hdwce~fstYPrt 435 (527)
+...+-++||++|||.|+++..+.+.+ +-- ++-++.. +.+..+-+. | + +-+. .|-.+-....+++
T Consensus 68 ~~~~~p~~VL~iG~G~G~~~~~ll~~~~~~~--v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~ 145 (270)
T TIGR00417 68 FTHPNPKHVLVIGGGDGGVLREVLKHKSVEK--ATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENT 145 (270)
T ss_pred hcCCCCCEEEEEcCCchHHHHHHHhCCCcce--EEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCC
Confidence 334455699999999999998876654 322 2222211 222222111 0 0 0011 1111111123678
Q ss_pred cchhhhcCccccccCCCCCCCCCcccccceeecccccCCcEEEEeC
Q 009719 436 YDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 481 (527)
Q Consensus 436 yDLiHa~~~fs~~~~~~~~~~rC~~~~illEmDRILRP~G~~iird 481 (527)
||+|=.+... .+. ....--....+-.+-|+|+|||.+++..
T Consensus 146 yDvIi~D~~~-~~~----~~~~l~~~ef~~~~~~~L~pgG~lv~~~ 186 (270)
T TIGR00417 146 FDVIIVDSTD-PVG----PAETLFTKEFYELLKKALNEDGIFVAQS 186 (270)
T ss_pred ccEEEEeCCC-CCC----cccchhHHHHHHHHHHHhCCCcEEEEcC
Confidence 9998654321 111 0010001344557789999999999873
No 247
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=91.67 E-value=0.38 Score=47.97 Aligned_cols=67 Identities=19% Similarity=0.267 Sum_probs=42.3
Q ss_pred cChHHHHHHHHHc----CCC--cEEeeccccC-CC-----CCCCcccEEEecCcccccccChHHHHHHHhhcccCCcEEE
Q 009719 164 DSHKAQIQFALER----GIP--AFVAMLGTRR-LP-----FPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLV 231 (527)
Q Consensus 164 D~seaqvq~A~eR----g~p--a~~~v~dae~-LP-----FpD~SFDlV~cs~~l~hw~d~~~~aL~Ei~RVLRPGG~lv 231 (527)
|.++..++.|++. |+. ..+..+++.. |+ .++++||+|++..-- .... .++.++.+.|||||.++
T Consensus 100 D~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~VfiDa~k---~~y~-~~~~~~~~ll~~GG~ii 175 (234)
T PLN02781 100 DIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDFAFVDADK---PNYV-HFHEQLLKLVKVGGIIA 175 (234)
T ss_pred ECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCEEEECCCH---HHHH-HHHHHHHHhcCCCeEEE
Confidence 5555666666543 543 4455666533 33 235799999875321 1122 38899999999999998
Q ss_pred Eec
Q 009719 232 ISG 234 (527)
Q Consensus 232 iS~ 234 (527)
+..
T Consensus 176 ~dn 178 (234)
T PLN02781 176 FDN 178 (234)
T ss_pred EEc
Confidence 743
No 248
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=91.38 E-value=0.099 Score=52.15 Aligned_cols=133 Identities=14% Similarity=0.202 Sum_probs=68.1
Q ss_pred CCCeeeEeecCCCccc----hhhhccC-CCeeEEEecCCCCCCchhHhhhccc---cccc-cccCCCCCC----C-CCcc
Q 009719 371 TPAIRNIMDMNAFFGG----FAAALTS-DPVWVMNVVPARKSSTLSVIYDRGL---IGVY-HDWCEPFST----Y-PRTY 436 (527)
Q Consensus 371 ~~~iRnvmDm~ag~Gg----FaAaL~~-~~VwvMnvvp~~~~ntl~vi~eRGL---iG~~-hdwce~fst----Y-Prty 436 (527)
-..-++|+|+|||+|. +|+++.. -.|..+=.-|....-.-+.+-+-|+ |-+. .|..+.++. . ..+|
T Consensus 66 ~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~f 145 (234)
T PLN02781 66 IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEF 145 (234)
T ss_pred HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCC
Confidence 3456799999998885 3444432 2344443333211111112222343 1111 122222221 1 2589
Q ss_pred chhhhcCccccccCCCCCCCCCcccccceeecccccCCcEEEEeCC-------------H----HHHHHHHHH----Hhc
Q 009719 437 DLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS-------------P----EVIDKVSRI----ANT 495 (527)
Q Consensus 437 DLiHa~~~fs~~~~~~~~~~rC~~~~illEmDRILRP~G~~iird~-------------~----~~~~~i~~i----~~~ 495 (527)
|+|-.+.--..| ..++-++=|.|||||.+|+.+. . .....|+++ ...
T Consensus 146 D~VfiDa~k~~y------------~~~~~~~~~ll~~GG~ii~dn~l~~G~v~~~~~~~~~~~~~~~~~ir~~~~~i~~~ 213 (234)
T PLN02781 146 DFAFVDADKPNY------------VHFHEQLLKLVKVGGIIAFDNTLWFGFVAQEEDEVPEHMRAYRKALLEFNKLLASD 213 (234)
T ss_pred CEEEECCCHHHH------------HHHHHHHHHhcCCCeEEEEEcCCcCCeecCcccccchhhhHHHHHHHHHHHHHhhC
Confidence 998665322222 3456666799999999997531 0 122334443 444
Q ss_pred CCceeEEecCCCCCCCCceEEEEEec
Q 009719 496 VRWTAAVHDKEPGSNGREKILVATKS 521 (527)
Q Consensus 496 l~W~~~~~~~e~~~~~~ekiLi~~K~ 521 (527)
=+++..+... .+.+++++|.
T Consensus 214 ~~~~~~~lp~------gdG~~i~~k~ 233 (234)
T PLN02781 214 PRVEISQISI------GDGVTLCRRL 233 (234)
T ss_pred CCeEEEEEEe------CCccEEEEEe
Confidence 4666665532 3578888885
No 249
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=91.33 E-value=0.35 Score=50.64 Aligned_cols=118 Identities=16% Similarity=0.209 Sum_probs=65.8
Q ss_pred CeeeEeecCCCccchhhhccCCC---eeEEEecCCCCCCchhHhhhc----cccccccccCCCCCCCC--CccchhhhcC
Q 009719 373 AIRNIMDMNAFFGGFAAALTSDP---VWVMNVVPARKSSTLSVIYDR----GLIGVYHDWCEPFSTYP--RTYDLIHVSG 443 (527)
Q Consensus 373 ~iRnvmDm~ag~GgFaAaL~~~~---VwvMnvvp~~~~ntl~vi~eR----GLiG~~hdwce~fstYP--rtyDLiHa~~ 443 (527)
.-+||+|.|||.|=+|=|..+.. |.-.-+=|. .+.+..|- |+--.-|.=+-.-.+.| +.||+|=|+=
T Consensus 162 ~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~----AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANI 237 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQ----AVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANI 237 (300)
T ss_pred CCCEEEEecCChhHHHHHHHHcCCceEEEecCCHH----HHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEehh
Confidence 46899999999998876654433 332222221 12222111 11000000000112234 5899998852
Q ss_pred ccccccCCCCCCCCCcccccceeecccccCCcEEEEeCCHH-HHHHHHHHHhcCCceeEEecCC
Q 009719 444 IESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSPE-VIDKVSRIANTVRWTAAVHDKE 506 (527)
Q Consensus 444 ~fs~~~~~~~~~~rC~~~~illEmDRILRP~G~~iird~~~-~~~~i~~i~~~l~W~~~~~~~e 506 (527)
+..- +..+.=++-|.|+|||++|++.-.+ ..+.|.+.+.+--|++..+...
T Consensus 238 -LA~v-----------l~~La~~~~~~lkpgg~lIlSGIl~~q~~~V~~a~~~~gf~v~~~~~~ 289 (300)
T COG2264 238 -LAEV-----------LVELAPDIKRLLKPGGRLILSGILEDQAESVAEAYEQAGFEVVEVLER 289 (300)
T ss_pred -hHHH-----------HHHHHHHHHHHcCCCceEEEEeehHhHHHHHHHHHHhCCCeEeEEEec
Confidence 2211 1234446789999999999998433 4667777787778887766433
No 250
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=91.22 E-value=0.14 Score=55.26 Aligned_cols=20 Identities=20% Similarity=0.371 Sum_probs=18.0
Q ss_pred cccceeecccccCCcEEEEe
Q 009719 461 VDLMVEMDRMLRPEGTVVVR 480 (527)
Q Consensus 461 ~~illEmDRILRP~G~~iir 480 (527)
..+|-++=|+|||||.+|++
T Consensus 348 ~~lL~~a~~~LkpgG~lvys 367 (426)
T TIGR00563 348 SEILDAIWPLLKTGGTLVYA 367 (426)
T ss_pred HHHHHHHHHhcCCCcEEEEE
Confidence 36888899999999999998
No 251
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=91.16 E-value=0.069 Score=54.20 Aligned_cols=93 Identities=14% Similarity=0.231 Sum_probs=65.3
Q ss_pred eEeecCCCccchhhhccCCCeeEEEecCCCCC-CchhHhhhcccc-ccccccCCCCCC----CC-CccchhhhcCccccc
Q 009719 376 NIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGLI-GVYHDWCEPFST----YP-RTYDLIHVSGIESLI 448 (527)
Q Consensus 376 nvmDm~ag~GgFaAaL~~~~VwvMnvvp~~~~-ntl~vi~eRGLi-G~~hdwce~fst----YP-rtyDLiHa~~~fs~~ 448 (527)
.|||+|||-|.++-.|.... -+|.-.|.. .-++++-.+.+. |+.-||... .+ -. -+||.|=|..+..+.
T Consensus 62 ~vLDvGCGgG~Lse~mAr~G---a~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~-~~edl~~~~~~FDvV~cmEVlEHv 137 (243)
T COG2227 62 RVLDVGCGGGILSEPLARLG---ASVTGIDASEKPIEVAKLHALESGVNIDYRQA-TVEDLASAGGQFDVVTCMEVLEHV 137 (243)
T ss_pred eEEEecCCccHhhHHHHHCC---CeeEEecCChHHHHHHHHhhhhccccccchhh-hHHHHHhcCCCccEEEEhhHHHcc
Confidence 49999999999999998877 456666655 556666544442 333333211 11 11 478888888888776
Q ss_pred cCCCCCCCCCcccccceeecccccCCcEEEEeC
Q 009719 449 KNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 481 (527)
Q Consensus 449 ~~~~~~~~rC~~~~illEmDRILRP~G~~iird 481 (527)
. +...++-+..+.|||||-++++.
T Consensus 138 ~---------dp~~~~~~c~~lvkP~G~lf~ST 161 (243)
T COG2227 138 P---------DPESFLRACAKLVKPGGILFLST 161 (243)
T ss_pred C---------CHHHHHHHHHHHcCCCcEEEEec
Confidence 4 23569999999999999999996
No 252
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=91.13 E-value=0.23 Score=51.72 Aligned_cols=93 Identities=18% Similarity=0.307 Sum_probs=53.1
Q ss_pred CCeeEEeeccCcChHHHHHHHH----HcCCCcEEeeccccCCCCCCCcccEEEecCcccccccChHHHHHHHhhcccCCc
Q 009719 153 ENILTLSFAPRDSHKAQIQFAL----ERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGG 228 (527)
Q Consensus 153 r~V~~msiAp~D~seaqvq~A~----eRg~pa~~~v~dae~LPFpD~SFDlV~cs~~l~hw~d~~~~aL~Ei~RVLRPGG 228 (527)
+.|.++++.| ..++.|+ ..++...+.+.. ...+....||+|+++-.. + .....+.++.++|+|||
T Consensus 185 ~~v~a~DiDp-----~Av~~a~~N~~~N~~~~~~~v~~--~~~~~~~~~dlvvANI~~-~---vL~~l~~~~~~~l~~~G 253 (295)
T PF06325_consen 185 KKVVAIDIDP-----LAVEAARENAELNGVEDRIEVSL--SEDLVEGKFDLVVANILA-D---VLLELAPDIASLLKPGG 253 (295)
T ss_dssp SEEEEEESSC-----HHHHHHHHHHHHTT-TTCEEESC--TSCTCCS-EEEEEEES-H-H---HHHHHHHHCHHHEEEEE
T ss_pred CeEEEecCCH-----HHHHHHHHHHHHcCCCeeEEEEE--ecccccccCCEEEECCCH-H---HHHHHHHHHHHhhCCCC
Confidence 3466666644 3344443 446655543332 233446999999988543 1 12237788999999999
Q ss_pred EEEEecCCCCCCCchhHHHHHHHHHHhcceEEeee
Q 009719 229 YLVISGPPVQWPKQDKEWADLQAVARALCYELIAV 263 (527)
Q Consensus 229 ~lviS~pp~~~~~~~~~w~~i~~l~~~mcW~~~~~ 263 (527)
+|++|+--. .....+.+..+. -|++...
T Consensus 254 ~lIlSGIl~------~~~~~v~~a~~~-g~~~~~~ 281 (295)
T PF06325_consen 254 YLILSGILE------EQEDEVIEAYKQ-GFELVEE 281 (295)
T ss_dssp EEEEEEEEG------GGHHHHHHHHHT-TEEEEEE
T ss_pred EEEEccccH------HHHHHHHHHHHC-CCEEEEE
Confidence 999999511 123344444454 5665443
No 253
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=91.11 E-value=0.18 Score=52.05 Aligned_cols=96 Identities=18% Similarity=0.257 Sum_probs=59.0
Q ss_pred CCeeeEeecCCCccchhhhcc----C------CCeeEEEecCCCCCCchhHhhhcccc-ccccc----cC----CCCCCC
Q 009719 372 PAIRNIMDMNAFFGGFAAALT----S------DPVWVMNVVPARKSSTLSVIYDRGLI-GVYHD----WC----EPFSTY 432 (527)
Q Consensus 372 ~~iRnvmDm~ag~GgFaAaL~----~------~~VwvMnvvp~~~~ntl~vi~eRGLi-G~~hd----wc----e~fstY 432 (527)
+.-=++|||.+|+|--|=.+. + ..|.|.-+ .|++|.+.-.|-.= |..-+ |- |.++ |
T Consensus 99 ~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Di----np~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~Lp-F 173 (296)
T KOG1540|consen 99 GKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDI----NPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLP-F 173 (296)
T ss_pred CCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeC----CHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCC-C
Confidence 444689999999985443332 1 33444332 34777777666531 11111 22 4455 5
Q ss_pred C-CccchhhhcCccccccCCCCCCCCCcccccceeecccccCCcEEEEeC
Q 009719 433 P-RTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 481 (527)
Q Consensus 433 P-rtyDLiHa~~~fs~~~~~~~~~~rC~~~~illEmDRILRP~G~~iird 481 (527)
| .+||+.-.+.-.-.+. .+...|=|+-|+|.|||-|.+=+
T Consensus 174 dd~s~D~yTiafGIRN~t---------h~~k~l~EAYRVLKpGGrf~cLe 214 (296)
T KOG1540|consen 174 DDDSFDAYTIAFGIRNVT---------HIQKALREAYRVLKPGGRFSCLE 214 (296)
T ss_pred CCCcceeEEEecceecCC---------CHHHHHHHHHHhcCCCcEEEEEE
Confidence 6 8999866543222222 36789999999999999887765
No 254
>PRK00811 spermidine synthase; Provisional
Probab=91.03 E-value=0.34 Score=49.67 Aligned_cols=107 Identities=14% Similarity=0.191 Sum_probs=55.4
Q ss_pred ccCCCCeeeEeecCCCccchhhhccCC-CeeEEEecCCCCCCchhHhhhc------cc-----ccc-ccccCCCCCCCCC
Q 009719 368 KLGTPAIRNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKSSTLSVIYDR------GL-----IGV-YHDWCEPFSTYPR 434 (527)
Q Consensus 368 ~i~~~~iRnvmDm~ag~GgFaAaL~~~-~VwvMnvvp~~~~ntl~vi~eR------GL-----iG~-~hdwce~fstYPr 434 (527)
++....-++|||+|||.|+++..+.+. ++--+-+|=.+. ..+.++-+. |+ +-+ ..|-.+-+.+-+.
T Consensus 71 ~~~~~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~-~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~ 149 (283)
T PRK00811 71 LFAHPNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDE-RVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETEN 149 (283)
T ss_pred HhhCCCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCH-HHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCC
Confidence 344455789999999999999988776 443222221221 222222111 11 000 1111111122246
Q ss_pred ccchhhhcCccccccCCCCCCCCCcccccceeecccccCCcEEEEe
Q 009719 435 TYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 480 (527)
Q Consensus 435 tyDLiHa~~~fs~~~~~~~~~~rC~~~~illEmDRILRP~G~~iir 480 (527)
+||+|=++ ++..+. ....---..++-++-|+|+|||.+++.
T Consensus 150 ~yDvIi~D-~~dp~~----~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 150 SFDVIIVD-STDPVG----PAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred cccEEEEC-CCCCCC----chhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 89998654 222221 000000134566789999999999996
No 255
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=91.02 E-value=0.14 Score=50.74 Aligned_cols=95 Identities=9% Similarity=-0.006 Sum_probs=54.1
Q ss_pred eEeecCCCccchhhhccCCCeeEEEecCCCCCCchh-Hhhhcccccccc--------------ccCCCCCCC---C-Ccc
Q 009719 376 NIMDMNAFFGGFAAALTSDPVWVMNVVPARKSSTLS-VIYDRGLIGVYH--------------DWCEPFSTY---P-RTY 436 (527)
Q Consensus 376 nvmDm~ag~GgFaAaL~~~~VwvMnvvp~~~~ntl~-vi~eRGLiG~~h--------------dwce~fstY---P-rty 436 (527)
.|||.|||.|--|.+|.++..=|.-|=.+. .-+. +.-++|+..... -++.-|-.+ + .+|
T Consensus 40 rvL~~gCG~G~da~~LA~~G~~V~avD~s~--~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~~f 117 (218)
T PRK13255 40 RVLVPLCGKSLDMLWLAEQGHEVLGVELSE--LAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLADV 117 (218)
T ss_pred eEEEeCCCChHhHHHHHhCCCeEEEEccCH--HHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccCCCe
Confidence 899999999999999998876443332221 2122 234666643211 122212111 1 255
Q ss_pred chhhhcCccccccCCCCCCCCCcccccceeecccccCCcEEEE
Q 009719 437 DLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVV 479 (527)
Q Consensus 437 DLiHa~~~fs~~~~~~~~~~rC~~~~illEmDRILRP~G~~ii 479 (527)
|+|-...+|.... ...-..++-.|-++|+|||.+++
T Consensus 118 d~v~D~~~~~~l~-------~~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 118 DAVYDRAALIALP-------EEMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred eEEEehHhHhhCC-------HHHHHHHHHHHHHHcCCCCeEEE
Confidence 6655544444331 11125678899999999996444
No 256
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=90.93 E-value=0.24 Score=50.64 Aligned_cols=39 Identities=36% Similarity=0.559 Sum_probs=32.7
Q ss_pred cccEEEecCcccccccChH---HHHHHHhhcccCCcEEEEec
Q 009719 196 SFDIVHCSRCLIPFTAYNA---TYLIEVDRLLRPGGYLVISG 234 (527)
Q Consensus 196 SFDlV~cs~~l~hw~d~~~---~aL~Ei~RVLRPGG~lviS~ 234 (527)
.||+|++++|+.--..+.. .+++.+.+.|||||+|++.+
T Consensus 158 ~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~ 199 (256)
T PF01234_consen 158 KFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAG 199 (256)
T ss_dssp SEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred chhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 5999999999977665543 49999999999999999965
No 257
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=90.86 E-value=0.54 Score=51.03 Aligned_cols=104 Identities=18% Similarity=0.244 Sum_probs=53.3
Q ss_pred eeEeecCCCccchhhhccCC---CeeEEEecCCCCC-CchhHhhh----ccccc---cccccCCCCCCCCCccchhhhcC
Q 009719 375 RNIMDMNAFFGGFAAALTSD---PVWVMNVVPARKS-STLSVIYD----RGLIG---VYHDWCEPFSTYPRTYDLIHVSG 443 (527)
Q Consensus 375 RnvmDm~ag~GgFaAaL~~~---~VwvMnvvp~~~~-ntl~vi~e----RGLiG---~~hdwce~fstYPrtyDLiHa~~ 443 (527)
.+|+|||||.|+++.++.+. +--|+ -.|-. +.+..+-+ .|+-. +-.|..+....++.+||+|=++-
T Consensus 252 ~~VLDlgaG~G~~t~~la~~~~~~~~v~---avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~fD~Vl~D~ 328 (444)
T PRK14902 252 DTVLDACAAPGGKTTHIAELLKNTGKVV---ALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKFDKILVDA 328 (444)
T ss_pred CEEEEeCCCCCHHHHHHHHHhCCCCEEE---EEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccCCEEEEcC
Confidence 57999999999998777542 22222 22222 33333322 24311 22333332223457899875432
Q ss_pred ccccc----cCCCCC--CCCCcc-------cccceeecccccCCcEEEEeC
Q 009719 444 IESLI----KNPGSN--KNSCSL-------VDLMVEMDRMLRPEGTVVVRD 481 (527)
Q Consensus 444 ~fs~~----~~~~~~--~~rC~~-------~~illEmDRILRP~G~~iird 481 (527)
-.|.. ..|... ...-.+ ..+|-+.=|+|+|||.+|+..
T Consensus 329 Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvyst 379 (444)
T PRK14902 329 PCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYST 379 (444)
T ss_pred CCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEc
Confidence 11100 000000 000111 247888889999999999863
No 258
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=90.75 E-value=0.35 Score=52.38 Aligned_cols=94 Identities=20% Similarity=0.148 Sum_probs=64.2
Q ss_pred hhccccccccCCe-eEEeeccCcChHHHHHHHHHc----CCC---cEEeeccc-cCCCCCCC---cccEEEec---C---
Q 009719 143 VASFGGSMLSENI-LTLSFAPRDSHKAQIQFALER----GIP---AFVAMLGT-RRLPFPAF---SFDIVHCS---R--- 204 (527)
Q Consensus 143 vgsfga~Ll~r~V-~~msiAp~D~seaqvq~A~eR----g~p---a~~~v~da-e~LPFpD~---SFDlV~cs---~--- 204 (527)
+|+|+-+....|+ .++++ |.|..-++.|++. |+. ..+.++|+ +-|....+ .||+|+.. +
T Consensus 228 TGgfSv~Aa~gGA~~vt~V---D~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIilDPPsF~r~ 304 (393)
T COG1092 228 TGGFSVHAALGGASEVTSV---DLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIILDPPSFARS 304 (393)
T ss_pred CcHHHHHHHhcCCCceEEE---eccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEEECCcccccC
Confidence 7888888888888 66666 7888888888765 443 46777785 33454434 99999964 1
Q ss_pred --cccccccChHHHHHHHhhcccCCcEEEEecCCCCC
Q 009719 205 --CLIPFTAYNATYLIEVDRLLRPGGYLVISGPPVQW 239 (527)
Q Consensus 205 --~l~hw~d~~~~aL~Ei~RVLRPGG~lviS~pp~~~ 239 (527)
.......+-...+.+..++|+|||.+++|+.....
T Consensus 305 k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~ 341 (393)
T COG1092 305 KKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHF 341 (393)
T ss_pred cccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCcc
Confidence 11010111123888999999999999999864443
No 259
>PLN02366 spermidine synthase
Probab=90.50 E-value=0.94 Score=47.40 Aligned_cols=70 Identities=19% Similarity=0.242 Sum_probs=45.2
Q ss_pred cChHHHHHHHHHcC------C---CcEEeeccccC-C-CCCCCcccEEEecCcccccccCh----HHHHHHHhhcccCCc
Q 009719 164 DSHKAQIQFALERG------I---PAFVAMLGTRR-L-PFPAFSFDIVHCSRCLIPFTAYN----ATYLIEVDRLLRPGG 228 (527)
Q Consensus 164 D~seaqvq~A~eRg------~---pa~~~v~dae~-L-PFpD~SFDlV~cs~~l~hw~d~~----~~aL~Ei~RVLRPGG 228 (527)
|+.+.+++.|++.- . ...+..+|+.. | ..+++.||+|++... .++.... ..+++.+.|.|+|||
T Consensus 122 EiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvIi~D~~-dp~~~~~~L~t~ef~~~~~~~L~pgG 200 (308)
T PLN02366 122 EIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAIIVDSS-DPVGPAQELFEKPFFESVARALRPGG 200 (308)
T ss_pred ECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEEEEcCC-CCCCchhhhhHHHHHHHHHHhcCCCc
Confidence 55678888887642 1 23455566522 1 124678999998643 3332221 237999999999999
Q ss_pred EEEEec
Q 009719 229 YLVISG 234 (527)
Q Consensus 229 ~lviS~ 234 (527)
.++.-.
T Consensus 201 vlv~q~ 206 (308)
T PLN02366 201 VVCTQA 206 (308)
T ss_pred EEEECc
Confidence 998744
No 260
>PRK11524 putative methyltransferase; Provisional
Probab=90.17 E-value=0.18 Score=51.51 Aligned_cols=55 Identities=15% Similarity=0.222 Sum_probs=35.9
Q ss_pred EEeeccccCC--CCCCCcccEEEec--Ccc--------cccc-----cChHHHHHHHhhcccCCcEEEEecC
Q 009719 181 FVAMLGTRRL--PFPAFSFDIVHCS--RCL--------IPFT-----AYNATYLIEVDRLLRPGGYLVISGP 235 (527)
Q Consensus 181 ~~~v~dae~L--PFpD~SFDlV~cs--~~l--------~hw~-----d~~~~aL~Ei~RVLRPGG~lviS~p 235 (527)
.+..+|+..+ .+++++||+|+++ +.. ..|. +.....|.|+.|||||||.+++...
T Consensus 10 ~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~ 81 (284)
T PRK11524 10 TIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMNS 81 (284)
T ss_pred EEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEcC
Confidence 3445565443 4678999999985 211 0111 1112388999999999999998754
No 261
>PRK03612 spermidine synthase; Provisional
Probab=90.05 E-value=0.91 Score=50.63 Aligned_cols=74 Identities=20% Similarity=0.147 Sum_probs=49.4
Q ss_pred ccCcChHHHHHHHHHcC------------CCcEEeeccccC-CCCCCCcccEEEecCcccccccC-----hHHHHHHHhh
Q 009719 161 APRDSHKAQIQFALERG------------IPAFVAMLGTRR-LPFPAFSFDIVHCSRCLIPFTAY-----NATYLIEVDR 222 (527)
Q Consensus 161 Ap~D~seaqvq~A~eRg------------~pa~~~v~dae~-LPFpD~SFDlV~cs~~l~hw~d~-----~~~aL~Ei~R 222 (527)
...|.++++++.|++.. -...+..+|+.. +...+++||+|++... .++... ...+++++.|
T Consensus 325 ~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fDvIi~D~~-~~~~~~~~~L~t~ef~~~~~~ 403 (521)
T PRK03612 325 TLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFDVIIVDLP-DPSNPALGKLYSVEFYRLLKR 403 (521)
T ss_pred EEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCCEEEEeCC-CCCCcchhccchHHHHHHHHH
Confidence 33466789999998731 123456677654 4444679999998743 233111 1137899999
Q ss_pred cccCCcEEEEecC
Q 009719 223 LLRPGGYLVISGP 235 (527)
Q Consensus 223 VLRPGG~lviS~p 235 (527)
.|||||.+++...
T Consensus 404 ~L~pgG~lv~~~~ 416 (521)
T PRK03612 404 RLAPDGLLVVQST 416 (521)
T ss_pred hcCCCeEEEEecC
Confidence 9999999999654
No 262
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=89.86 E-value=0.011 Score=50.33 Aligned_cols=92 Identities=22% Similarity=0.242 Sum_probs=52.5
Q ss_pred EeecCCCccchhhhccCCC--eeEEEecCCCCC-CchhHhhhcc----c-cccccccCCCCCCCCCccchhhhcCc-ccc
Q 009719 377 IMDMNAFFGGFAAALTSDP--VWVMNVVPARKS-STLSVIYDRG----L-IGVYHDWCEPFSTYPRTYDLIHVSGI-ESL 447 (527)
Q Consensus 377 vmDm~ag~GgFaAaL~~~~--VwvMnvvp~~~~-ntl~vi~eRG----L-iG~~hdwce~fstYPrtyDLiHa~~~-fs~ 447 (527)
|||+|||.|.+..+|.+.- ---..+.-.|-. +.|..+.++. + +=.++.=.+.++..-.+||+|=++++ |..
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 7999999999998886431 000233334433 5666666655 2 11111111222222369999999766 554
Q ss_pred ccCCCCCCCCCcccccceeecccccCCc
Q 009719 448 IKNPGSNKNSCSLVDLMVEMDRMLRPEG 475 (527)
Q Consensus 448 ~~~~~~~~~rC~~~~illEmDRILRP~G 475 (527)
. ..=.++.++=+|=|+|||||
T Consensus 81 ~-------~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 81 L-------SPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp S-------SHHHHHHHHHHHHHTEEEEE
T ss_pred C-------CHHHHHHHHHHHHHHhCCCC
Confidence 3 23346789999999999998
No 263
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=89.73 E-value=1.9 Score=45.30 Aligned_cols=120 Identities=16% Similarity=0.192 Sum_probs=70.9
Q ss_pred hccccccccCCeeEEeeccCcChHHHHHHHHHc----CCCcEEeeccccCCCCCCCcccEEEecCccccccc----ChHH
Q 009719 144 ASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTA----YNAT 215 (527)
Q Consensus 144 gsfga~Ll~r~V~~msiAp~D~seaqvq~A~eR----g~pa~~~v~dae~LPFpD~SFDlV~cs~~l~hw~d----~~~~ 215 (527)
|-.|..|..++- ...++..|.+..-|+.|++. ++.......+..-.+-.+ .||+|+|.==+|.=.+ -...
T Consensus 170 Gvlg~~la~~~p-~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~~-kfd~IisNPPfh~G~~v~~~~~~~ 247 (300)
T COG2813 170 GVLGLVLAKKSP-QAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPVEG-KFDLIISNPPFHAGKAVVHSLAQE 247 (300)
T ss_pred cHHHHHHHHhCC-CCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccccccc-cccEEEeCCCccCCcchhHHHHHH
Confidence 333444444443 23455568888888888754 444422333444556666 9999999843321011 1114
Q ss_pred HHHHHhhcccCCcEEEEecCCCCCCCchhHHHHHHHHHHhcceEEeeeecceEEEeC
Q 009719 216 YLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIAVDGNTVIWKK 272 (527)
Q Consensus 216 aL~Ei~RVLRPGG~lviS~pp~~~~~~~~~w~~i~~l~~~mcW~~~~~~~~v~iwrK 272 (527)
.+.+..+.|++||.|.+-.. ...++. ..|+++.. .-+.+.+.+...||+-
T Consensus 248 ~i~~A~~~L~~gGeL~iVan---~~l~y~--~~L~~~Fg--~v~~la~~~gf~Vl~a 297 (300)
T COG2813 248 IIAAAARHLKPGGELWIVAN---RHLPYE--KKLKELFG--NVEVLAKNGGFKVLRA 297 (300)
T ss_pred HHHHHHHhhccCCEEEEEEc---CCCChH--HHHHHhcC--CEEEEEeCCCEEEEEE
Confidence 78899999999999999764 111222 23444433 2577888888888874
No 264
>PLN03075 nicotianamine synthase; Provisional
Probab=89.71 E-value=0.3 Score=50.97 Aligned_cols=140 Identities=9% Similarity=0.043 Sum_probs=75.0
Q ss_pred CeeeEeecCCCccchhhhccC----CCeeEEEecCCCCC-CchhHhh--hccccc----cccccCCCCCCCCCccchhhh
Q 009719 373 AIRNIMDMNAFFGGFAAALTS----DPVWVMNVVPARKS-STLSVIY--DRGLIG----VYHDWCEPFSTYPRTYDLIHV 441 (527)
Q Consensus 373 ~iRnvmDm~ag~GgFaAaL~~----~~VwvMnvvp~~~~-ntl~vi~--eRGLiG----~~hdwce~fstYPrtyDLiHa 441 (527)
.-+.|+|+|||-|++.|.+.- ...-+.|+--.... +.-.-.+ +.||=. ..+|--+.. .-...||+|=+
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~-~~l~~FDlVF~ 201 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVT-ESLKEYDVVFL 201 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcc-cccCCcCEEEE
Confidence 568999999998877554322 23334344322111 1111112 234311 112222211 11267999998
Q ss_pred cCccccccCCCCCCCCCcccccceeecccccCCcEEEEeCC---HHHHHHHHHHHhcCCceeEEecCCCCCCCCceEEEE
Q 009719 442 SGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS---PEVIDKVSRIANTVRWTAAVHDKEPGSNGREKILVA 518 (527)
Q Consensus 442 ~~~fs~~~~~~~~~~rC~~~~illEmDRILRP~G~~iird~---~~~~~~i~~i~~~l~W~~~~~~~e~~~~~~ekiLi~ 518 (527)
. .+..+. +=.-..+|-.+=|.|||||++++|.- ...+..+-....-=.|++...-|-.++ .-.-++|+
T Consensus 202 ~-ALi~~d-------k~~k~~vL~~l~~~LkPGG~Lvlr~~~G~r~~LYp~v~~~~~~gf~~~~~~~P~~~-v~Nsvi~~ 272 (296)
T PLN03075 202 A-ALVGMD-------KEEKVKVIEHLGKHMAPGALLMLRSAHGARAFLYPVVDPCDLRGFEVLSVFHPTDE-VINSVIIA 272 (296)
T ss_pred e-cccccc-------cccHHHHHHHHHHhcCCCcEEEEecccchHhhcCCCCChhhCCCeEEEEEECCCCC-ceeeEEEE
Confidence 8 554442 11126788899999999999999952 222222111111117887655444333 56789999
Q ss_pred Eecc
Q 009719 519 TKSL 522 (527)
Q Consensus 519 ~K~~ 522 (527)
+|.-
T Consensus 273 r~~~ 276 (296)
T PLN03075 273 RKPG 276 (296)
T ss_pred Eeec
Confidence 9964
No 265
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=89.24 E-value=0.57 Score=47.04 Aligned_cols=86 Identities=15% Similarity=0.205 Sum_probs=52.7
Q ss_pred ccccccCCeeEEeeccCcChHHHHHHHHHcCCC-----cEEeeccccCCCCCCCcccEEEecCcccccccChH-HHHHHH
Q 009719 147 GGSMLSENILTLSFAPRDSHKAQIQFALERGIP-----AFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNA-TYLIEV 220 (527)
Q Consensus 147 ga~Ll~r~V~~msiAp~D~seaqvq~A~eRg~p-----a~~~v~dae~LPFpD~SFDlV~cs~~l~hw~d~~~-~aL~Ei 220 (527)
+..||-.-...+++. +..+.-++.|++.-.. ..+...+.+..--+.+.+|+|+|..|+.|.+|.+- .+|+-.
T Consensus 70 Tk~lLl~~f~~VDlV--Ep~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lghLTD~dlv~fL~RC 147 (218)
T PF05891_consen 70 TKGLLLPVFDEVDLV--EPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLGHLTDEDLVAFLKRC 147 (218)
T ss_dssp HHHTCCCC-SEEEEE--ES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GGGS-HHHHHHHHHHH
T ss_pred HHHHHHHhcCEeEEe--ccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhccCCHHHHHHHHHHH
Confidence 334544434445543 4456778888754222 23333444444333579999999999999998774 499999
Q ss_pred hhcccCCcEEEEec
Q 009719 221 DRLLRPGGYLVISG 234 (527)
Q Consensus 221 ~RVLRPGG~lviS~ 234 (527)
...|+|||.+++-.
T Consensus 148 k~~L~~~G~IvvKE 161 (218)
T PF05891_consen 148 KQALKPNGVIVVKE 161 (218)
T ss_dssp HHHEEEEEEEEEEE
T ss_pred HHhCcCCcEEEEEe
Confidence 99999999999844
No 266
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=88.77 E-value=0.81 Score=46.76 Aligned_cols=128 Identities=14% Similarity=0.229 Sum_probs=78.3
Q ss_pred CCeeeEeecCCCccchhhhccCC-C-eeEE--EecCCCCC-C--chhH--hhhccc--cccccccCCCCCCCCCccchhh
Q 009719 372 PAIRNIMDMNAFFGGFAAALTSD-P-VWVM--NVVPARKS-S--TLSV--IYDRGL--IGVYHDWCEPFSTYPRTYDLIH 440 (527)
Q Consensus 372 ~~iRnvmDm~ag~GgFaAaL~~~-~-VwvM--nvvp~~~~-n--tl~v--i~eRGL--iG~~hdwce~fstYPrtyDLiH 440 (527)
.....|+|+|||.|.-+=+|..+ + +=+. -+-+.... . +++. .-||-= =+=+.+|..++.. .+||+|=
T Consensus 43 ~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~--~~fD~Ii 120 (248)
T COG4123 43 PKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVF--ASFDLII 120 (248)
T ss_pred ccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccc--cccCEEE
Confidence 34889999999999776666555 2 3222 22211110 0 1111 112210 1333445555432 3699988
Q ss_pred hcCcccccc---------CCCCCCCCCcccccceeecccccCCcEEEEeCCHHHHHHHHHHHhcCCceeE
Q 009719 441 VSGIESLIK---------NPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRIANTVRWTAA 501 (527)
Q Consensus 441 a~~~fs~~~---------~~~~~~~rC~~~~illEmDRILRP~G~~iird~~~~~~~i~~i~~~l~W~~~ 501 (527)
|+==|-.-. ..+...-.|++++++-=-=++|+|||++.+=-..+-+.+|-+++++++|+..
T Consensus 121 ~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~erl~ei~~~l~~~~~~~k 190 (248)
T COG4123 121 CNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPERLAEIIELLKSYNLEPK 190 (248)
T ss_pred eCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHHHHHHHHHHHHhcCCCce
Confidence 875543211 0001123477778877788999999999999999999999999999999975
No 267
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=88.29 E-value=0.37 Score=52.92 Aligned_cols=129 Identities=22% Similarity=0.304 Sum_probs=61.0
Q ss_pred ccCccccchhhHHHH---HHHHHHHHHhhhccCCCC----eeeEeecCCCccchh------hhccCCCeeEEEecCCC-C
Q 009719 341 KNGYDVFEADSRRWR---RRVAYYKNTLNVKLGTPA----IRNIMDMNAFFGGFA------AALTSDPVWVMNVVPAR-K 406 (527)
Q Consensus 341 g~~~~~f~~d~~~W~---~~v~~Y~~~l~~~i~~~~----iRnvmDm~ag~GgFa------AaL~~~~VwvMnvvp~~-~ 406 (527)
..+-|.|+.|..+.. +.+... |.......+ --+|||+|||.|-.+ ++-....+=|-.|--.. +
T Consensus 150 s~tYe~fE~D~vKY~~Ye~AI~~a---l~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A 226 (448)
T PF05185_consen 150 SQTYEVFEKDPVKYDQYERAIEEA---LKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNA 226 (448)
T ss_dssp HHHHHHHCC-HHHHHHHHHHHHHH---HHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHH
T ss_pred cccHhhHhcCHHHHHHHHHHHHHH---HHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhH
Confidence 346799999986553 333222 222334443 356999999999884 22223334443332111 1
Q ss_pred CCchh-Hhhhccc---cccccccCCCCCCCCCccchhhhcCccccccCCCCCCCCCcccccceeecccccCCcEEEEe
Q 009719 407 SSTLS-VIYDRGL---IGVYHDWCEPFSTYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 480 (527)
Q Consensus 407 ~ntl~-vi~eRGL---iG~~hdwce~fstYPrtyDLiHa~~~fs~~~~~~~~~~rC~~~~illEmDRILRP~G~~iir 480 (527)
--+|+ .|-+.|+ |=++|.==+.+.. |--.|+ +.|-|.+ +-...-.+..+|.-.||.|+|+|..|=+
T Consensus 227 ~~~l~~~v~~n~w~~~V~vi~~d~r~v~l-pekvDI-----IVSElLG--sfg~nEl~pE~Lda~~rfLkp~Gi~IP~ 296 (448)
T PF05185_consen 227 VVTLQKRVNANGWGDKVTVIHGDMREVEL-PEKVDI-----IVSELLG--SFGDNELSPECLDAADRFLKPDGIMIPS 296 (448)
T ss_dssp HHHHHHHHHHTTTTTTEEEEES-TTTSCH-SS-EEE-----EEE---B--TTBTTTSHHHHHHHGGGGEEEEEEEESS
T ss_pred HHHHHHHHHhcCCCCeEEEEeCcccCCCC-CCceeE-----EEEeccC--CccccccCHHHHHHHHhhcCCCCEEeCc
Confidence 13442 2244454 4444432222221 334454 4455541 1111223445677889999999887744
No 268
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=88.24 E-value=0.39 Score=50.48 Aligned_cols=97 Identities=16% Similarity=0.229 Sum_probs=65.4
Q ss_pred CeeeEeecCCCccchhhhccCCC-eeEEEecCCCCCCchhHhhhcccccccc-ccC-----CCCCCCCCccchhhhcCcc
Q 009719 373 AIRNIMDMNAFFGGFAAALTSDP-VWVMNVVPARKSSTLSVIYDRGLIGVYH-DWC-----EPFSTYPRTYDLIHVSGIE 445 (527)
Q Consensus 373 ~iRnvmDm~ag~GgFaAaL~~~~-VwvMnvvp~~~~ntl~vi~eRGLiG~~h-dwc-----e~fstYPrtyDLiHa~~~f 445 (527)
+=|.|+|+|||-|-|.=.|.... --|+-+=|..-. .+|+-+-+-++|.-. -.. |.++. ..+||+|=|.|++
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf-~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~FDtVF~MGVL 192 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLF-YLQFEAIKHFLGQDPPVFELPLGVEDLPN-LGAFDTVFSMGVL 192 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHH-HHHHHHHHHHhCCCccEEEcCcchhhccc-cCCcCEEEEeeeh
Confidence 45799999999999987775554 467777765443 234444344443211 011 22333 5899999998887
Q ss_pred ccccCCCCCCCCCcccccceeecccccCCcEEEEe
Q 009719 446 SLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 480 (527)
Q Consensus 446 s~~~~~~~~~~rC~~~~illEmDRILRP~G~~iir 480 (527)
=+ |=+-.+.|.++=..|||||-+|+.
T Consensus 193 YH---------rr~Pl~~L~~Lk~~L~~gGeLvLE 218 (315)
T PF08003_consen 193 YH---------RRSPLDHLKQLKDSLRPGGELVLE 218 (315)
T ss_pred hc---------cCCHHHHHHHHHHhhCCCCEEEEE
Confidence 63 444577888999999999999976
No 269
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=88.19 E-value=0.77 Score=49.80 Aligned_cols=39 Identities=21% Similarity=0.472 Sum_probs=26.8
Q ss_pred cccceeecccccCCcEEEEeC----CHHHHHHHHHHHhcC-Cce
Q 009719 461 VDLMVEMDRMLRPEGTVVVRD----SPEVIDKVSRIANTV-RWT 499 (527)
Q Consensus 461 ~~illEmDRILRP~G~~iird----~~~~~~~i~~i~~~l-~W~ 499 (527)
..+|-++=|.|||||.+|+.. ..+-...|+.+++.. .|+
T Consensus 364 ~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~~~l~~~~~~~ 407 (434)
T PRK14901 364 AELLESLAPLLKPGGTLVYATCTLHPAENEAQIEQFLARHPDWK 407 (434)
T ss_pred HHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHHHhCCCcE
Confidence 467888999999999999874 223445566655543 354
No 270
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=88.11 E-value=0.21 Score=49.28 Aligned_cols=30 Identities=10% Similarity=-0.189 Sum_probs=23.4
Q ss_pred eeEeecCCCccchhhhccCCC--eeEEEecCC
Q 009719 375 RNIMDMNAFFGGFAAALTSDP--VWVMNVVPA 404 (527)
Q Consensus 375 RnvmDm~ag~GgFaAaL~~~~--VwvMnvvp~ 404 (527)
..|||.|||.|-.|.+|.++. |+-+-++|.
T Consensus 36 ~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~ 67 (213)
T TIGR03840 36 ARVFVPLCGKSLDLAWLAEQGHRVLGVELSEI 67 (213)
T ss_pred CeEEEeCCCchhHHHHHHhCCCeEEEEeCCHH
Confidence 489999999999999998885 554544443
No 271
>PHA03412 putative methyltransferase; Provisional
Probab=87.68 E-value=1.6 Score=44.51 Aligned_cols=72 Identities=11% Similarity=0.086 Sum_probs=46.2
Q ss_pred eeccCcChHHHHHHHHHcCCCcEEeeccccCCCCCCCcccEEEecC--c---cccccc-----C-hHHHHHHHhhcccCC
Q 009719 159 SFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSR--C---LIPFTA-----Y-NATYLIEVDRLLRPG 227 (527)
Q Consensus 159 siAp~D~seaqvq~A~eRg~pa~~~v~dae~LPFpD~SFDlV~cs~--~---l~hw~d-----~-~~~aL~Ei~RVLRPG 227 (527)
.+...|+.+.+++.|++....+.+..+|....++ +++||+|+|.= . ..+... . ...++....|.|+||
T Consensus 78 ~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~-~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G 156 (241)
T PHA03412 78 EIVCVELNHTYYKLGKRIVPEATWINADALTTEF-DTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQG 156 (241)
T ss_pred EEEEEECCHHHHHHHHhhccCCEEEEcchhcccc-cCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCC
Confidence 3444467788999998765456677788776665 57999999872 1 111100 0 112777888877777
Q ss_pred cEEEE
Q 009719 228 GYLVI 232 (527)
Q Consensus 228 G~lvi 232 (527)
+. ++
T Consensus 157 ~~-IL 160 (241)
T PHA03412 157 TF-II 160 (241)
T ss_pred EE-Ee
Confidence 75 54
No 272
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=87.59 E-value=1.6 Score=44.85 Aligned_cols=83 Identities=19% Similarity=0.223 Sum_probs=55.6
Q ss_pred hhcccccccc-C----CeeEEeeccCcChHHHHHHHHHc----CCC--cEEeeccccCCCCCCCcccEEEecCccccccc
Q 009719 143 VASFGGSMLS-E----NILTLSFAPRDSHKAQIQFALER----GIP--AFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTA 211 (527)
Q Consensus 143 vgsfga~Ll~-r----~V~~msiAp~D~seaqvq~A~eR----g~p--a~~~v~dae~LPFpD~SFDlV~cs~~l~hw~d 211 (527)
.|.++++|+. . .|++. +..+...+.|++. |+. +.+...|...--+++ .||+|+.. .++
T Consensus 105 SG~lt~~La~~vg~~G~v~ty-----E~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~-~vDav~LD-----mp~ 173 (256)
T COG2519 105 SGALTAYLARAVGPEGHVTTY-----EIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEE-DVDAVFLD-----LPD 173 (256)
T ss_pred chHHHHHHHHhhCCCceEEEE-----EecHHHHHHHHHHHHHhccccceEEEecccccccccc-ccCEEEEc-----CCC
Confidence 4555666652 1 23333 4567777788754 332 344556766666665 99999854 444
Q ss_pred ChHHHHHHHhhcccCCcEEEEecCCC
Q 009719 212 YNATYLIEVDRLLRPGGYLVISGPPV 237 (527)
Q Consensus 212 ~~~~aL~Ei~RVLRPGG~lviS~pp~ 237 (527)
+-. ++..++.+|||||.+++-.|.+
T Consensus 174 PW~-~le~~~~~Lkpgg~~~~y~P~v 198 (256)
T COG2519 174 PWN-VLEHVSDALKPGGVVVVYSPTV 198 (256)
T ss_pred hHH-HHHHHHHHhCCCcEEEEEcCCH
Confidence 445 9999999999999999998844
No 273
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=86.90 E-value=0.22 Score=47.27 Aligned_cols=122 Identities=20% Similarity=0.246 Sum_probs=57.3
Q ss_pred hhHHHHHHH--HHHHHHhhh---ccCCCCeeeEeecCCCcc--chhhhcc-CCCeeEEEecCCCCCCchhHhhhc-----
Q 009719 350 DSRRWRRRV--AYYKNTLNV---KLGTPAIRNIMDMNAFFG--GFAAALT-SDPVWVMNVVPARKSSTLSVIYDR----- 416 (527)
Q Consensus 350 d~~~W~~~v--~~Y~~~l~~---~i~~~~iRnvmDm~ag~G--gFaAaL~-~~~VwvMnvvp~~~~ntl~vi~eR----- 416 (527)
....|...+ ..|...... ......-++||+.|||.| |.+||.. ...-.|+.=.+. .-..+..-.++
T Consensus 17 G~~vW~aa~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~ 95 (173)
T PF10294_consen 17 GGKVWPAALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLL 95 (173)
T ss_dssp ------HHHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT----
T ss_pred cEEEechHHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccc
Confidence 356776544 346543210 012234569999999888 7877777 222223322221 10112222222
Q ss_pred -c-ccccccccCCCC--CC-CCCccchhhhcCccccccCCCCCCCCCcccccceeecccccCCcEEEEeC
Q 009719 417 -G-LIGVYHDWCEPF--ST-YPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 481 (527)
Q Consensus 417 -G-LiG~~hdwce~f--st-YPrtyDLiHa~~~fs~~~~~~~~~~rC~~~~illEmDRILRP~G~~iird 481 (527)
+ +--.-.||-+.. .. -++.||+|-|+.|+=.- =..+.++-=++++|.|+|-+++..
T Consensus 96 ~~~v~v~~L~Wg~~~~~~~~~~~~~D~IlasDv~Y~~---------~~~~~L~~tl~~ll~~~~~vl~~~ 156 (173)
T PF10294_consen 96 DGRVSVRPLDWGDELDSDLLEPHSFDVILASDVLYDE---------ELFEPLVRTLKRLLKPNGKVLLAY 156 (173)
T ss_dssp ----EEEE--TTS-HHHHHHS-SSBSEEEEES--S-G---------GGHHHHHHHHHHHBTT-TTEEEEE
T ss_pred cccccCcEEEecCcccccccccccCCEEEEecccchH---------HHHHHHHHHHHHHhCCCCEEEEEe
Confidence 1 234456898754 11 24789999998876421 123556666899999999988863
No 274
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=86.87 E-value=1.2 Score=48.54 Aligned_cols=89 Identities=16% Similarity=0.187 Sum_probs=57.3
Q ss_pred hhccccccccCCeeEEeeccCcChHHHHHHHHHc----CCC-cEEeecccc----CCCCCCCcccEEEecCcccccccCh
Q 009719 143 VASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIP-AFVAMLGTR----RLPFPAFSFDIVHCSRCLIPFTAYN 213 (527)
Q Consensus 143 vgsfga~Ll~r~V~~msiAp~D~seaqvq~A~eR----g~p-a~~~v~dae----~LPFpD~SFDlV~cs~~l~hw~d~~ 213 (527)
+|.++..|..+... +...|.++.+++.|+++ ++. +.+..+|+. .+++.+++||+|++.- +.....
T Consensus 308 tG~~sl~la~~~~~---V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~dP---Pr~g~~ 381 (443)
T PRK13168 308 LGNFTLPLARQAAE---VVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLLDP---PRAGAA 381 (443)
T ss_pred CCHHHHHHHHhCCE---EEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEECc---CCcChH
Confidence 56666666655433 33448888999888754 443 566667754 3567788999999752 222222
Q ss_pred HHHHHHHhhcccCCcEEEEecCCCCC
Q 009719 214 ATYLIEVDRLLRPGGYLVISGPPVQW 239 (527)
Q Consensus 214 ~~aL~Ei~RVLRPGG~lviS~pp~~~ 239 (527)
. .+..+.+ |+|++.+++|-.|..+
T Consensus 382 ~-~~~~l~~-~~~~~ivyvSCnp~tl 405 (443)
T PRK13168 382 E-VMQALAK-LGPKRIVYVSCNPATL 405 (443)
T ss_pred H-HHHHHHh-cCCCeEEEEEeChHHh
Confidence 2 4555555 6999999999776554
No 275
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=86.77 E-value=2.5 Score=46.81 Aligned_cols=80 Identities=18% Similarity=0.284 Sum_probs=49.8
Q ss_pred cChHHHHHHHHH---c-CCCc-EEeeccccCCC-CCCCcccEEE----ecCc--cc-------cccc--------ChHHH
Q 009719 164 DSHKAQIQFALE---R-GIPA-FVAMLGTRRLP-FPAFSFDIVH----CSRC--LI-------PFTA--------YNATY 216 (527)
Q Consensus 164 D~seaqvq~A~e---R-g~pa-~~~v~dae~LP-FpD~SFDlV~----cs~~--l~-------hw~d--------~~~~a 216 (527)
|.++..++...+ | |+.. .+...|+..++ ...+.||.|. ||-- +. .|.. .+...
T Consensus 145 D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~i 224 (470)
T PRK11933 145 EYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQREL 224 (470)
T ss_pred eCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHH
Confidence 555555544432 3 6654 45567776663 3346899999 7731 11 2221 12348
Q ss_pred HHHHhhcccCCcEEEEecCCCCCCCch
Q 009719 217 LIEVDRLLRPGGYLVISGPPVQWPKQD 243 (527)
Q Consensus 217 L~Ei~RVLRPGG~lviS~pp~~~~~~~ 243 (527)
|....+.|||||++|.|+-..+...++
T Consensus 225 L~~A~~~LkpGG~LVYSTCT~~~eENE 251 (470)
T PRK11933 225 IESAFHALKPGGTLVYSTCTLNREENQ 251 (470)
T ss_pred HHHHHHHcCCCcEEEEECCCCCHHHHH
Confidence 888999999999999999866554333
No 276
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=86.63 E-value=0.22 Score=57.45 Aligned_cols=128 Identities=17% Similarity=0.155 Sum_probs=67.8
Q ss_pred eeEeecCCCccchhhhccCCCeeEEEecCCCCC-CchhHhhh----cccc----c-cccccCCCCCCCCCccchhhhcCc
Q 009719 375 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYD----RGLI----G-VYHDWCEPFSTYPRTYDLIHVSGI 444 (527)
Q Consensus 375 RnvmDm~ag~GgFaAaL~~~~VwvMnvvp~~~~-ntl~vi~e----RGLi----G-~~hdwce~fstYPrtyDLiHa~~~ 444 (527)
+.|||++||+|+|+-++.....- .|+-+|.. .-+..+-+ -|+- - +-.|..+.+....++||+|=++-=
T Consensus 540 ~rVLDlf~gtG~~sl~aa~~Ga~--~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP 617 (702)
T PRK11783 540 KDFLNLFAYTGTASVHAALGGAK--STTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPP 617 (702)
T ss_pred CeEEEcCCCCCHHHHHHHHCCCC--EEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECCC
Confidence 58999999999999888766432 13333332 22222221 1221 0 112222211123578999876521
Q ss_pred c-ccccCC-CCCCCCCcccccceeecccccCCcEEEEeCCHHHHHHHHHHHhcCCceeEEec
Q 009719 445 E-SLIKNP-GSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRIANTVRWTAAVHD 504 (527)
Q Consensus 445 f-s~~~~~-~~~~~rC~~~~illEmDRILRP~G~~iird~~~~~~~i~~i~~~l~W~~~~~~ 504 (527)
. +.-+.. ......=...+++-..=|+|+|||.+++.....-+....+.+..-.+++....
T Consensus 618 ~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~~~~~~~~~~~~g~~~~~i~ 679 (702)
T PRK11783 618 TFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRGFKMDEEGLAKLGLKAEEIT 679 (702)
T ss_pred CCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCChhHHHHHhCCCeEEEEe
Confidence 1 100000 00000001245666678899999999997655544455666666678777653
No 277
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.55 E-value=0.51 Score=45.92 Aligned_cols=89 Identities=18% Similarity=0.284 Sum_probs=55.7
Q ss_pred cccccccCCeeEEeeccCcChHHHHHHHHH---cC--CCcEEe-e----ccccCCCCCCCcccEEEecCcccccccChHH
Q 009719 146 FGGSMLSENILTLSFAPRDSHKAQIQFALE---RG--IPAFVA-M----LGTRRLPFPAFSFDIVHCSRCLIPFTAYNAT 215 (527)
Q Consensus 146 fga~Ll~r~V~~msiAp~D~seaqvq~A~e---Rg--~pa~~~-v----~dae~LPFpD~SFDlV~cs~~l~hw~d~~~~ 215 (527)
.++-|+...+..-++--+|..+..|+-..+ +. .....+ + .-..++--.-++||.|.|+.|+ -+.+....
T Consensus 43 laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIlaADCl-FfdE~h~s 121 (201)
T KOG3201|consen 43 LAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIILAADCL-FFDEHHES 121 (201)
T ss_pred hhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEEeccch-hHHHHHHH
Confidence 455566665555555555766655544432 22 001111 1 1122344456799999999998 44444455
Q ss_pred HHHHHhhcccCCcEEEEecC
Q 009719 216 YLIEVDRLLRPGGYLVISGP 235 (527)
Q Consensus 216 aL~Ei~RVLRPGG~lviS~p 235 (527)
+..-|.+.|||.|..+++.|
T Consensus 122 LvdtIk~lL~p~g~Al~fsP 141 (201)
T KOG3201|consen 122 LVDTIKSLLRPSGRALLFSP 141 (201)
T ss_pred HHHHHHHHhCcccceeEecC
Confidence 88899999999999999988
No 278
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=86.38 E-value=1.4 Score=47.71 Aligned_cols=89 Identities=18% Similarity=0.202 Sum_probs=51.2
Q ss_pred hhccccccccCCeeEEeeccCcChHHHHHHHHHc----CCC---cEEeeccccCC-C-C--CCCcccEEEecCccccccc
Q 009719 143 VASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIP---AFVAMLGTRRL-P-F--PAFSFDIVHCSRCLIPFTA 211 (527)
Q Consensus 143 vgsfga~Ll~r~V~~msiAp~D~seaqvq~A~eR----g~p---a~~~v~dae~L-P-F--pD~SFDlV~cs~~l~hw~d 211 (527)
+|+|+-+.+..+.. .+...|.++.+++.|++. ++. ..+..+|+... + + ..++||+|++.-=. +..
T Consensus 231 tG~~~l~aa~~ga~--~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVilDPP~--f~~ 306 (396)
T PRK15128 231 TGGFAVSALMGGCS--QVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMDPPK--FVE 306 (396)
T ss_pred CCHHHHHHHhCCCC--EEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEECCCC--CCC
Confidence 55555444444431 233337778888877653 443 45667776442 1 2 35689999987211 111
Q ss_pred Ch----------HHHHHHHhhcccCCcEEEEecC
Q 009719 212 YN----------ATYLIEVDRLLRPGGYLVISGP 235 (527)
Q Consensus 212 ~~----------~~aL~Ei~RVLRPGG~lviS~p 235 (527)
.. ..++.-..++|+|||.|+.++-
T Consensus 307 ~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~sc 340 (396)
T PRK15128 307 NKSQLMGACRGYKDINMLAIQLLNPGGILLTFSC 340 (396)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 11 1134456799999999998654
No 279
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=86.20 E-value=1.4 Score=43.72 Aligned_cols=65 Identities=18% Similarity=0.100 Sum_probs=39.9
Q ss_pred cChHHHHHHHHHc----CC-CcEEeeccccCCCCCCCcccEEEecCcccccccChHHHHHHHhhcccCCcEEEEecC
Q 009719 164 DSHKAQIQFALER----GI-PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 235 (527)
Q Consensus 164 D~seaqvq~A~eR----g~-pa~~~v~dae~LPFpD~SFDlV~cs~~l~hw~d~~~~aL~Ei~RVLRPGG~lviS~p 235 (527)
|..+..++.|+++ +. .+.+..+|...---....||.|++..+.... =.++.+.||+||++++--.
T Consensus 104 E~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~apfD~I~v~~a~~~i-------p~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 104 ERDPELAERARRNLARLGIDNVEVVVGDGSEGWPEEAPFDRIIVTAAVPEI-------PEALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp ESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG-SEEEEEESSBBSS---------HHHHHTEEEEEEEEEEES
T ss_pred CccHHHHHHHHHHHHHhccCceeEEEcchhhccccCCCcCEEEEeeccchH-------HHHHHHhcCCCcEEEEEEc
Confidence 4456667777654 44 3456667753322235689999998776332 2346677999999998543
No 280
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=85.91 E-value=0.27 Score=44.52 Aligned_cols=39 Identities=26% Similarity=0.603 Sum_probs=27.7
Q ss_pred ccEEEecCcc--cc--cccCh-HHHHHHHhhcccCCcEEEEecC
Q 009719 197 FDIVHCSRCL--IP--FTAYN-ATYLIEVDRLLRPGGYLVISGP 235 (527)
Q Consensus 197 FDlV~cs~~l--~h--w~d~~-~~aL~Ei~RVLRPGG~lviS~p 235 (527)
||+|.|-.+. +| |.|.+ ..+++.+.+.|||||+|++-..
T Consensus 2 yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ 45 (110)
T PF06859_consen 2 YDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQ 45 (110)
T ss_dssp EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE--
T ss_pred ccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCC
Confidence 8999987643 34 33333 2489999999999999999754
No 281
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=85.64 E-value=1.8 Score=43.27 Aligned_cols=98 Identities=15% Similarity=0.101 Sum_probs=57.4
Q ss_pred CCCccchhhhccccccccCCeeEEeeccCcC-------hHHHHHHHHHcCCC------cEEe-eccccCCC-CCCCcccE
Q 009719 135 PWPESLSKVASFGGSMLSENILTLSFAPRDS-------HKAQIQFALERGIP------AFVA-MLGTRRLP-FPAFSFDI 199 (527)
Q Consensus 135 ~WP~Srd~vgsfga~Ll~r~V~~msiAp~D~-------seaqvq~A~eRg~p------a~~~-v~dae~LP-FpD~SFDl 199 (527)
=||-+-+.+.-|+.++-..| .+.+++|.+. -+.+-..++|.+.. ..+. ....+.+- .++.++|.
T Consensus 55 ~~PGgGy~TrI~s~~vgp~G-~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~~pq~~d~~~~~~~yh 133 (238)
T COG4798 55 LIPGGGYFTRIFSPAVGPKG-KVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGAPQKLDLVPTAQNYH 133 (238)
T ss_pred EecCCccHhhhhchhcCCce-eEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccCCCCcccccccchhhh
Confidence 36777777777888888888 4566777553 12222233332211 0111 11122332 24566666
Q ss_pred EEecCcccccccChHHHHHHHhhcccCCcEEEEecC
Q 009719 200 VHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 235 (527)
Q Consensus 200 V~cs~~l~hw~d~~~~aL~Ei~RVLRPGG~lviS~p 235 (527)
+.-..- +| +....++.+++++.|||||.+++-.+
T Consensus 134 dmh~k~-i~-~~~A~~vna~vf~~LKPGGv~~V~dH 167 (238)
T COG4798 134 DMHNKN-IH-PATAAKVNAAVFKALKPGGVYLVEDH 167 (238)
T ss_pred hhhccc-cC-cchHHHHHHHHHHhcCCCcEEEEEec
Confidence 665543 34 44555699999999999999999665
No 282
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=85.56 E-value=0.65 Score=50.24 Aligned_cols=104 Identities=20% Similarity=0.259 Sum_probs=52.9
Q ss_pred eeEeecCCCccchhhhccCC--CeeEEEecCCCCC-CchhHh---hhc-cc-cc-cccccCCCCCCC-CCccchhhhcCc
Q 009719 375 RNIMDMNAFFGGFAAALTSD--PVWVMNVVPARKS-STLSVI---YDR-GL-IG-VYHDWCEPFSTY-PRTYDLIHVSGI 444 (527)
Q Consensus 375 RnvmDm~ag~GgFaAaL~~~--~VwvMnvvp~~~~-ntl~vi---~eR-GL-iG-~~hdwce~fstY-PrtyDLiHa~~~ 444 (527)
..|||+|||.|+++..|.+. +.-| +-.|.. ..+..+ ++| |+ +- +.+|-.+....+ +.+||+|=++--
T Consensus 246 ~~VLDlgaG~G~~t~~la~~~~~~~v---~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~P 322 (427)
T PRK10901 246 ERVLDACAAPGGKTAHILELAPQAQV---VALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDAP 322 (427)
T ss_pred CEEEEeCCCCChHHHHHHHHcCCCEE---EEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECCC
Confidence 46999999999999777543 1222 222322 333332 222 32 11 122333221122 367999874432
Q ss_pred cccc----cCCCCCCCC---------CcccccceeecccccCCcEEEEeC
Q 009719 445 ESLI----KNPGSNKNS---------CSLVDLMVEMDRMLRPEGTVVVRD 481 (527)
Q Consensus 445 fs~~----~~~~~~~~r---------C~~~~illEmDRILRP~G~~iird 481 (527)
++.. ..|...-.+ .....+|-+.=++|+|||.++++.
T Consensus 323 cs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvyst 372 (427)
T PRK10901 323 CSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYAT 372 (427)
T ss_pred CCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 2210 000000000 001357888899999999999874
No 283
>PRK01581 speE spermidine synthase; Validated
Probab=85.55 E-value=0.94 Score=48.85 Aligned_cols=148 Identities=14% Similarity=0.124 Sum_probs=71.6
Q ss_pred cCCCCeeeEeecCCCccchhhhccCCC-eeEEEecCCCCC-CchhHhhh--------cc-c----c-ccccccCCCCCCC
Q 009719 369 LGTPAIRNIMDMNAFFGGFAAALTSDP-VWVMNVVPARKS-STLSVIYD--------RG-L----I-GVYHDWCEPFSTY 432 (527)
Q Consensus 369 i~~~~iRnvmDm~ag~GgFaAaL~~~~-VwvMnvvp~~~~-ntl~vi~e--------RG-L----i-G~~hdwce~fstY 432 (527)
..-..-++||++|+|.|+.+..+.+.+ += +|+-++-. .-+.++-+ +| + + -+..|-.+-...-
T Consensus 146 ~~h~~PkrVLIIGgGdG~tlrelLk~~~v~--~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~ 223 (374)
T PRK01581 146 SKVIDPKRVLILGGGDGLALREVLKYETVL--HVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSP 223 (374)
T ss_pred HhCCCCCEEEEECCCHHHHHHHHHhcCCCC--eEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhc
Confidence 344567899999999999888787654 22 22222211 22232222 11 1 0 0111111111222
Q ss_pred CCccchhhhcCccccccCCCCC-CCCCcccccceeecccccCCcEEEEeCC-----HHHHHHHHHH-HhcCCceeEEecC
Q 009719 433 PRTYDLIHVSGIESLIKNPGSN-KNSCSLVDLMVEMDRMLRPEGTVVVRDS-----PEVIDKVSRI-ANTVRWTAAVHDK 505 (527)
Q Consensus 433 PrtyDLiHa~~~fs~~~~~~~~-~~rC~~~~illEmDRILRP~G~~iird~-----~~~~~~i~~i-~~~l~W~~~~~~~ 505 (527)
++.||+|=++- .. |... ..+---..++-.+-|.|+|||.+++... .+++..+.+. -+...+....+..
T Consensus 224 ~~~YDVIIvDl-~D----P~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~~~~~~~~i~~tL~~af~~v~~y~t~ 298 (374)
T PRK01581 224 SSLYDVIIIDF-PD----PATELLSTLYTSELFARIATFLTEDGAFVCQSNSPADAPLVYWSIGNTIEHAGLTVKSYHTI 298 (374)
T ss_pred CCCccEEEEcC-CC----ccccchhhhhHHHHHHHHHHhcCCCcEEEEecCChhhhHHHHHHHHHHHHHhCCceEEEEEe
Confidence 46799887762 11 1110 0111113466788999999999988753 2222233333 3333443333322
Q ss_pred CCCCCCCceEEEEEeccC
Q 009719 506 EPGSNGREKILVATKSLW 523 (527)
Q Consensus 506 e~~~~~~ekiLi~~K~~w 523 (527)
-+.-...-.+++|.|.-.
T Consensus 299 vPsyg~~WgF~~as~~~~ 316 (374)
T PRK01581 299 VPSFGTDWGFHIAANSAY 316 (374)
T ss_pred cCCCCCceEEEEEeCCcc
Confidence 111111255777776544
No 284
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=85.45 E-value=1 Score=45.36 Aligned_cols=115 Identities=20% Similarity=0.295 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHHhhh----ccCCCCeeeEeecCCCccchhhhccCCC-eeEEEecCCCCC---Cc------hhHhhhcc
Q 009719 352 RRWRRRVAYYKNTLNV----KLGTPAIRNIMDMNAFFGGFAAALTSDP-VWVMNVVPARKS---ST------LSVIYDRG 417 (527)
Q Consensus 352 ~~W~~~v~~Y~~~l~~----~i~~~~iRnvmDm~ag~GgFaAaL~~~~-VwvMnvvp~~~~---nt------l~vi~eRG 417 (527)
...++.++.|++.|=. .+....==-||.+|||+|.---.+-..| .-|..+-|...- .+ -+.=++|=
T Consensus 51 ~~yne~~~~ykrelFs~i~~~~gk~~K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~f 130 (252)
T KOG4300|consen 51 SIYNEIADSYKRELFSGIYYFLGKSGKGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERF 130 (252)
T ss_pred HHHHHHHHHHHHHHHhhhHHHhcccCccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEE
Confidence 5667788888864432 2233333458999999998777776555 345555554320 00 01112222
Q ss_pred ccccccccCCCCCCCC-CccchhhhcCccccccCCCCCCCCCcc---cccceeecccccCCcEEEEeCC
Q 009719 418 LIGVYHDWCEPFSTYP-RTYDLIHVSGIESLIKNPGSNKNSCSL---VDLMVEMDRMLRPEGTVVVRDS 482 (527)
Q Consensus 418 LiG~~hdwce~fstYP-rtyDLiHa~~~fs~~~~~~~~~~rC~~---~~illEmDRILRP~G~~iird~ 482 (527)
..|-- |.++--+ -+||.|=|.-++ |+. ...|=|+-|||||||.+|+=+.
T Consensus 131 vva~g----e~l~~l~d~s~DtVV~TlvL------------CSve~~~k~L~e~~rlLRpgG~iifiEH 183 (252)
T KOG4300|consen 131 VVADG----ENLPQLADGSYDTVVCTLVL------------CSVEDPVKQLNEVRRLLRPGGRIIFIEH 183 (252)
T ss_pred Eeech----hcCcccccCCeeeEEEEEEE------------eccCCHHHHHHHHHHhcCCCcEEEEEec
Confidence 22221 3343224 689998886444 333 5789999999999999998753
No 285
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=85.36 E-value=0.66 Score=46.97 Aligned_cols=20 Identities=25% Similarity=0.406 Sum_probs=17.6
Q ss_pred ccceeecccccCCcEEEEeC
Q 009719 462 DLMVEMDRMLRPEGTVVVRD 481 (527)
Q Consensus 462 ~illEmDRILRP~G~~iird 481 (527)
.||-++=++|||||++|.+.
T Consensus 180 ~iL~~a~~~lkpgG~lvYst 199 (264)
T TIGR00446 180 ELIDSAFDALKPGGVLVYST 199 (264)
T ss_pred HHHHHHHHhcCCCCEEEEEe
Confidence 58888889999999999983
No 286
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=85.34 E-value=1.1 Score=44.91 Aligned_cols=66 Identities=27% Similarity=0.356 Sum_probs=43.7
Q ss_pred cChHHHHHHHHHc----CCCc--EEee-ccc-cCCC-CCCCcccEEEecCcccccccChHHHHHHHhhcccCCcEEEEe
Q 009719 164 DSHKAQIQFALER----GIPA--FVAM-LGT-RRLP-FPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVIS 233 (527)
Q Consensus 164 D~seaqvq~A~eR----g~pa--~~~v-~da-e~LP-FpD~SFDlV~cs~~l~hw~d~~~~aL~Ei~RVLRPGG~lviS 233 (527)
|..+.+.+.|++. |+.. .+.. +|+ +.|- +.+++||+|... +...+-..+|.+..+.|||||.+++-
T Consensus 91 E~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDliFID----adK~~yp~~le~~~~lLr~GGliv~D 165 (219)
T COG4122 91 ERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLVFID----ADKADYPEYLERALPLLRPGGLIVAD 165 (219)
T ss_pred eCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEEEEe----CChhhCHHHHHHHHHHhCCCcEEEEe
Confidence 5566777777643 5543 2333 343 2333 678999999955 33333234999999999999999973
No 287
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=85.16 E-value=3.7 Score=41.40 Aligned_cols=73 Identities=19% Similarity=0.113 Sum_probs=43.5
Q ss_pred CcChHHHHHHHHHcC--CCcEEeeccccC-CCC-CCCcccEEEecCccc--------------ccc-------cCh----
Q 009719 163 RDSHKAQIQFALERG--IPAFVAMLGTRR-LPF-PAFSFDIVHCSRCLI--------------PFT-------AYN---- 213 (527)
Q Consensus 163 ~D~seaqvq~A~eRg--~pa~~~v~dae~-LPF-pD~SFDlV~cs~~l~--------------hw~-------d~~---- 213 (527)
.|.++.+++.|+++- ....+..+|... ++- ..+.||+|++.-=.+ |.+ .++
T Consensus 116 vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~ 195 (251)
T TIGR03704 116 ADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVL 195 (251)
T ss_pred EECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHH
Confidence 377788888887541 113455566433 331 135799999862101 110 011
Q ss_pred HHHHHHHhhcccCCcEEEEecC
Q 009719 214 ATYLIEVDRLLRPGGYLVISGP 235 (527)
Q Consensus 214 ~~aL~Ei~RVLRPGG~lviS~p 235 (527)
...+..+.++|||||.+++...
T Consensus 196 ~~i~~~a~~~L~~gG~l~l~~~ 217 (251)
T TIGR03704 196 RRVAAGAPDWLAPGGHLLVETS 217 (251)
T ss_pred HHHHHHHHHhcCCCCEEEEEEC
Confidence 1366677799999999999865
No 288
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=85.14 E-value=3.4 Score=43.45 Aligned_cols=126 Identities=21% Similarity=0.287 Sum_probs=69.0
Q ss_pred eEeecCCCccchhhhccCCC---eeEEEecCCCCC--CchhHhhhccccc--ccc-ccCCCCCCCCCccchhhhcCcccc
Q 009719 376 NIMDMNAFFGGFAAALTSDP---VWVMNVVPARKS--STLSVIYDRGLIG--VYH-DWCEPFSTYPRTYDLIHVSGIESL 447 (527)
Q Consensus 376 nvmDm~ag~GgFaAaL~~~~---VwvMnvvp~~~~--ntl~vi~eRGLiG--~~h-dwce~fstYPrtyDLiHa~~~fs~ 447 (527)
+|+|.|||+|=.++.|.+.. -++|-=+...+- .... +-+-|+=+ +++ |-+|+- ...||+|=++-=|-.
T Consensus 161 ~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~N-l~~N~~~~~~v~~s~~~~~v---~~kfd~IisNPPfh~ 236 (300)
T COG2813 161 KVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKN-LAANGVENTEVWASNLYEPV---EGKFDLIISNPPFHA 236 (300)
T ss_pred cEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHh-HHHcCCCccEEEEecccccc---cccccEEEeCCCccC
Confidence 99999999999999996654 456632222110 1111 22233333 222 222322 348999877655542
Q ss_pred ccCCCCCCCCCcc---cccceeecccccCCcEEEEe--CCHHHHHHHHHHHhcCCceeEEecCCCCCCCCceEEEEEe
Q 009719 448 IKNPGSNKNSCSL---VDLMVEMDRMLRPEGTVVVR--DSPEVIDKVSRIANTVRWTAAVHDKEPGSNGREKILVATK 520 (527)
Q Consensus 448 ~~~~~~~~~rC~~---~~illEmDRILRP~G~~iir--d~~~~~~~i~~i~~~l~W~~~~~~~e~~~~~~ekiLi~~K 520 (527)
-+ + =.. ..++-+-=+-|++||-++|= .-..+-.+++++.. ++..... .++=+||=+.|
T Consensus 237 G~------~-v~~~~~~~~i~~A~~~L~~gGeL~iVan~~l~y~~~L~~~Fg----~v~~la~----~~gf~Vl~a~k 299 (300)
T COG2813 237 GK------A-VVHSLAQEIIAAAARHLKPGGELWIVANRHLPYEKKLKELFG----NVEVLAK----NGGFKVLRAKK 299 (300)
T ss_pred Cc------c-hhHHHHHHHHHHHHHhhccCCEEEEEEcCCCChHHHHHHhcC----CEEEEEe----CCCEEEEEEec
Confidence 11 1 110 14556667889999977554 44556667777665 3333321 12446666665
No 289
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=85.08 E-value=1.2 Score=44.25 Aligned_cols=109 Identities=17% Similarity=0.248 Sum_probs=62.4
Q ss_pred eEeecCCCccchhhhccCCCeeEEEecCCCC-C---CchhHhhhc-ccc--------cccc-ccCCCCCCCCCccchhhh
Q 009719 376 NIMDMNAFFGGFAAALTSDPVWVMNVVPARK-S---STLSVIYDR-GLI--------GVYH-DWCEPFSTYPRTYDLIHV 441 (527)
Q Consensus 376 nvmDm~ag~GgFaAaL~~~~VwvMnvvp~~~-~---ntl~vi~eR-GLi--------G~~h-dwce~fstYPrtyDLiHa 441 (527)
+|||.|||-|.+---|.+...-- -.+=+|= + .--+-|.|| |+- -+.. +|| +.-||+||-
T Consensus 70 ~VlDLGtGNG~~L~~L~~egf~~-~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~------~~qfdlvlD 142 (227)
T KOG1271|consen 70 RVLDLGTGNGHLLFQLAKEGFQS-KLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFL------SGQFDLVLD 142 (227)
T ss_pred ceeeccCCchHHHHHHHHhcCCC-CccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCccc------ccceeEEee
Confidence 89999999999988887665211 0111111 1 112233443 432 1222 555 577999998
Q ss_pred cCccccccCCCCCCCCCcccccceeecccccCCcEEEEeCCHHHHHHHHHH
Q 009719 442 SGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRI 492 (527)
Q Consensus 442 ~~~fs~~~~~~~~~~rC~~~~illEmDRILRP~G~~iird~~~~~~~i~~i 492 (527)
-+-+.... ...++..-.+..++==++++|+|||.|+|..=.-..+++.+.
T Consensus 143 KGT~DAis-Ls~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T~dELv~~ 192 (227)
T KOG1271|consen 143 KGTLDAIS-LSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFTKDELVEE 192 (227)
T ss_pred cCceeeee-cCCCCcccceeeehhhHhhccCCCcEEEEEecCccHHHHHHH
Confidence 88876543 111111122345666689999999999999744444443333
No 290
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=84.05 E-value=3.5 Score=43.89 Aligned_cols=99 Identities=23% Similarity=0.363 Sum_probs=55.7
Q ss_pred hhccccccccCCeeEEeeccCcChHHHHHHHH----HcCCCc-EEeeccccCCC--CCCC-cccEEE----ecC-cccc-
Q 009719 143 VASFGGSMLSENILTLSFAPRDSHKAQIQFAL----ERGIPA-FVAMLGTRRLP--FPAF-SFDIVH----CSR-CLIP- 208 (527)
Q Consensus 143 vgsfga~Ll~r~V~~msiAp~D~seaqvq~A~----eRg~pa-~~~v~dae~LP--FpD~-SFDlV~----cs~-~l~h- 208 (527)
+.-.++++-+.+..++.+ |.++..++... +-|+.. .+...|+..++ ++.. .||.|. ||- ..++
T Consensus 171 Tthla~~~~~~~~iV~A~---D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~iLlDaPCSg~G~irr 247 (355)
T COG0144 171 TTHLAELMENEGAIVVAV---DVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRILLDAPCSGTGVIRR 247 (355)
T ss_pred HHHHHHhcCCCCceEEEE---cCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcEEEECCCCCCCccccc
Confidence 333344444444443333 55554444332 336654 45556766554 2333 599998 442 2221
Q ss_pred -----ccc----------ChHHHHHHHhhcccCCcEEEEecCCCCCCCchh
Q 009719 209 -----FTA----------YNATYLIEVDRLLRPGGYLVISGPPVQWPKQDK 244 (527)
Q Consensus 209 -----w~d----------~~~~aL~Ei~RVLRPGG~lviS~pp~~~~~~~~ 244 (527)
|.. -+...|....++|||||.|+.|+-.+....++.
T Consensus 248 ~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~eENE~ 298 (355)
T COG0144 248 DPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPEENEE 298 (355)
T ss_pred CccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchhcCHH
Confidence 211 122388889999999999999997666555554
No 291
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=83.86 E-value=0.39 Score=44.88 Aligned_cols=46 Identities=20% Similarity=0.187 Sum_probs=33.7
Q ss_pred CCCCCCCCccchhhhcCccccccCCCCCCCCCcccccceeecccccCCcEEEEeC
Q 009719 427 EPFSTYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 481 (527)
Q Consensus 427 e~fstYPrtyDLiHa~~~fs~~~~~~~~~~rC~~~~illEmDRILRP~G~~iird 481 (527)
+.++.-+.+||+|=+...+..+. +....|-||-|+|+|||.++|-|
T Consensus 36 ~~lp~~~~~fD~v~~~~~l~~~~---------d~~~~l~ei~rvLkpGG~l~i~d 81 (160)
T PLN02232 36 IDLPFDDCEFDAVTMGYGLRNVV---------DRLRAMKEMYRVLKPGSRVSILD 81 (160)
T ss_pred hhCCCCCCCeeEEEecchhhcCC---------CHHHHHHHHHHHcCcCeEEEEEE
Confidence 44442247999997765555432 34678999999999999999876
No 292
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=83.32 E-value=0.35 Score=50.86 Aligned_cols=19 Identities=16% Similarity=0.207 Sum_probs=16.4
Q ss_pred eeEeecCCCccchhhhccC
Q 009719 375 RNIMDMNAFFGGFAAALTS 393 (527)
Q Consensus 375 RnvmDm~ag~GgFaAaL~~ 393 (527)
.+|||+|||.|.+++.|.+
T Consensus 82 ~~VLDIG~GtG~~a~~LA~ 100 (322)
T PRK13943 82 MRVLEIGGGTGYNAAVMSR 100 (322)
T ss_pred CEEEEEeCCccHHHHHHHH
Confidence 4799999999999988754
No 293
>PRK03612 spermidine synthase; Provisional
Probab=83.02 E-value=0.74 Score=51.32 Aligned_cols=124 Identities=16% Similarity=0.187 Sum_probs=60.5
Q ss_pred CCeeeEeecCCCccchhhhccCCC-eeEEEecCCCCCCchhHhhhc-cc------------cccc-cccCCCCCCCCCcc
Q 009719 372 PAIRNIMDMNAFFGGFAAALTSDP-VWVMNVVPARKSSTLSVIYDR-GL------------IGVY-HDWCEPFSTYPRTY 436 (527)
Q Consensus 372 ~~iRnvmDm~ag~GgFaAaL~~~~-VwvMnvvp~~~~ntl~vi~eR-GL------------iG~~-hdwce~fstYPrty 436 (527)
.+-++|+|+|+|.|+.+..+.+.+ |=.+-+|=.| +.-+.++-+. .+ +-+. .|=-+-....++.|
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid-~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~f 374 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLD-PAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKF 374 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECC-HHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCC
Confidence 456889999999999987776553 2111111111 1112222110 00 0001 01011112346789
Q ss_pred chhhhcCccccccCCCCCCCCCcccccceeecccccCCcEEEEeC-----CHHHHHHHHHHHhcCCcee
Q 009719 437 DLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD-----SPEVIDKVSRIANTVRWTA 500 (527)
Q Consensus 437 DLiHa~~~fs~~~~~~~~~~rC~~~~illEmDRILRP~G~~iird-----~~~~~~~i~~i~~~l~W~~ 500 (527)
|+|-++. ...+. +. ..+-- -.+++-++=|+|+|||.+++.. ..+.+.++.+..++....+
T Consensus 375 DvIi~D~-~~~~~-~~-~~~L~-t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf~v 439 (521)
T PRK03612 375 DVIIVDL-PDPSN-PA-LGKLY-SVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGLAT 439 (521)
T ss_pred CEEEEeC-CCCCC-cc-hhccc-hHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCCEE
Confidence 9997762 21111 00 00000 0234556779999999999963 3444555555555553443
No 294
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=82.88 E-value=4.1 Score=44.34 Aligned_cols=129 Identities=16% Similarity=0.287 Sum_probs=69.0
Q ss_pred eeEeecCCCccchhhhccCCCeeEEEecCCCCC-CchhHhhh----cccc---ccccccCCCCCC--C-CCccchhhhcC
Q 009719 375 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYD----RGLI---GVYHDWCEPFST--Y-PRTYDLIHVSG 443 (527)
Q Consensus 375 RnvmDm~ag~GgFaAaL~~~~VwvMnvvp~~~~-ntl~vi~e----RGLi---G~~hdwce~fst--Y-PrtyDLiHa~~ 443 (527)
..|+|++||.|.|+.+|...-- .|+-.|.. ..+..+-+ .|+- =+..|+-+.+.. + +.+||+|-++
T Consensus 299 ~~VLDlgcGtG~~sl~la~~~~---~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~d- 374 (443)
T PRK13168 299 DRVLDLFCGLGNFTLPLARQAA---EVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLLD- 374 (443)
T ss_pred CEEEEEeccCCHHHHHHHHhCC---EEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEEC-
Confidence 4799999999999999976643 33444433 33333322 2321 111222222222 2 2568887543
Q ss_pred ccccccCCCCCCCCCcccccceeecccccCCcEEEEeCCHHHHHH-HHHHHhcCCceeE---EecCCCCCCCCceEEEEE
Q 009719 444 IESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSPEVIDK-VSRIANTVRWTAA---VHDKEPGSNGREKILVAT 519 (527)
Q Consensus 444 ~fs~~~~~~~~~~rC~~~~illEmDRILRP~G~~iird~~~~~~~-i~~i~~~l~W~~~---~~~~e~~~~~~ekiLi~~ 519 (527)
| .|-.+..++-.+-+ |.|++.++++=++..+.+ ++.+.+ --|++. ..|.=+.+..=|-|.+-+
T Consensus 375 -------P----Pr~g~~~~~~~l~~-~~~~~ivyvSCnp~tlaRDl~~L~~-~gY~l~~i~~~DmFP~T~HvE~v~lL~ 441 (443)
T PRK13168 375 -------P----PRAGAAEVMQALAK-LGPKRIVYVSCNPATLARDAGVLVE-AGYRLKRAGMLDMFPHTGHVESMALFE 441 (443)
T ss_pred -------c----CCcChHHHHHHHHh-cCCCeEEEEEeChHHhhccHHHHhh-CCcEEEEEEEeccCCCCCcEEEEEEEE
Confidence 1 22223344433333 589999999976665444 555543 236653 345555555556665554
Q ss_pred e
Q 009719 520 K 520 (527)
Q Consensus 520 K 520 (527)
|
T Consensus 442 r 442 (443)
T PRK13168 442 R 442 (443)
T ss_pred e
Confidence 4
No 295
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=81.72 E-value=0.4 Score=48.17 Aligned_cols=23 Identities=17% Similarity=0.342 Sum_probs=19.7
Q ss_pred eeeEeecCCCccchhhhccCCCe
Q 009719 374 IRNIMDMNAFFGGFAAALTSDPV 396 (527)
Q Consensus 374 iRnvmDm~ag~GgFaAaL~~~~V 396 (527)
=.+|||+|||+|+|.-.|...++
T Consensus 76 ~~~vlDiG~gtG~~t~~l~~~ga 98 (228)
T TIGR00478 76 NKIVLDVGSSTGGFTDCALQKGA 98 (228)
T ss_pred CCEEEEcccCCCHHHHHHHHcCC
Confidence 35899999999999999987754
No 296
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=81.69 E-value=1.7 Score=42.61 Aligned_cols=92 Identities=16% Similarity=0.033 Sum_probs=65.3
Q ss_pred hhccccccccCCeeEEeeccCcChHHHHHHHHHcCCCcEEeeccccCCC-----CCCCcccEEEecCcccccccChH-HH
Q 009719 143 VASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLP-----FPAFSFDIVHCSRCLIPFTAYNA-TY 216 (527)
Q Consensus 143 vgsfga~Ll~r~V~~msiAp~D~seaqvq~A~eRg~pa~~~v~dae~LP-----FpD~SFDlV~cs~~l~hw~d~~~-~a 216 (527)
+|.+.-.+|++++---++.....+..-+..-.++--.+.+..+|+..|- +.+.-||.|+|..=+..++-+.. ..
T Consensus 59 TGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iai 138 (194)
T COG3963 59 TGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAI 138 (194)
T ss_pred ccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhhcCCCeeeeEEeccccccCcHHHHHHH
Confidence 6888889999988655554444444444443444444557777877765 78999999999876666665543 37
Q ss_pred HHHHhhcccCCcEEEEec
Q 009719 217 LIEVDRLLRPGGYLVISG 234 (527)
Q Consensus 217 L~Ei~RVLRPGG~lviS~ 234 (527)
|.++.--|++||-++--+
T Consensus 139 le~~~~rl~~gg~lvqft 156 (194)
T COG3963 139 LESLLYRLPAGGPLVQFT 156 (194)
T ss_pred HHHHHHhcCCCCeEEEEE
Confidence 888888999999998643
No 297
>PLN02823 spermine synthase
Probab=81.53 E-value=5 Score=42.62 Aligned_cols=71 Identities=20% Similarity=0.268 Sum_probs=45.9
Q ss_pred CcChHHHHHHHHHcCC---------CcEEeeccccC-CCCCCCcccEEEecCccccccc------ChHHHHH-HHhhccc
Q 009719 163 RDSHKAQIQFALERGI---------PAFVAMLGTRR-LPFPAFSFDIVHCSRCLIPFTA------YNATYLI-EVDRLLR 225 (527)
Q Consensus 163 ~D~seaqvq~A~eRg~---------pa~~~v~dae~-LPFpD~SFDlV~cs~~l~hw~d------~~~~aL~-Ei~RVLR 225 (527)
.|+.++.+++|++... ...+..+|+.. |.-.++.||+|++.. .-++.. ....++. .+.|.|+
T Consensus 133 VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~D~-~dp~~~~~~~~Lyt~eF~~~~~~~~L~ 211 (336)
T PLN02823 133 CDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIGDL-ADPVEGGPCYQLYTKSFYERIVKPKLN 211 (336)
T ss_pred EECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEecC-CCccccCcchhhccHHHHHHHHHHhcC
Confidence 3566789999986521 13455566433 455578999999873 223211 1122676 8999999
Q ss_pred CCcEEEEec
Q 009719 226 PGGYLVISG 234 (527)
Q Consensus 226 PGG~lviS~ 234 (527)
|||.+++-.
T Consensus 212 p~Gvlv~q~ 220 (336)
T PLN02823 212 PGGIFVTQA 220 (336)
T ss_pred CCcEEEEec
Confidence 999998754
No 298
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=81.51 E-value=2.9 Score=42.83 Aligned_cols=90 Identities=17% Similarity=0.258 Sum_probs=52.7
Q ss_pred cChHHHHHHHHHc----CC--CcEEeeccccCCC--CCCCcccEEEecCcc---------------cccc--cChHHHHH
Q 009719 164 DSHKAQIQFALER----GI--PAFVAMLGTRRLP--FPAFSFDIVHCSRCL---------------IPFT--AYNATYLI 218 (527)
Q Consensus 164 D~seaqvq~A~eR----g~--pa~~~v~dae~LP--FpD~SFDlV~cs~~l---------------~hw~--d~~~~aL~ 218 (527)
+..+.+.++|++. ++ .+.+.++|.+... +.-.+||+|+|.==. -|+. ..-...++
T Consensus 75 Eiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~ 154 (248)
T COG4123 75 EIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIR 154 (248)
T ss_pred EeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHH
Confidence 5567777777653 22 2445667765543 344589999997200 0110 01122566
Q ss_pred HHhhcccCCcEEEEecCCCCCCCchhHHHHHHHHHHhcceEE
Q 009719 219 EVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYEL 260 (527)
Q Consensus 219 Ei~RVLRPGG~lviS~pp~~~~~~~~~w~~i~~l~~~mcW~~ 260 (527)
=..+.|||||+|.+..+|.. -.++.++.+++.|..
T Consensus 155 ~a~~~lk~~G~l~~V~r~er-------l~ei~~~l~~~~~~~ 189 (248)
T COG4123 155 AAAKLLKPGGRLAFVHRPER-------LAEIIELLKSYNLEP 189 (248)
T ss_pred HHHHHccCCCEEEEEecHHH-------HHHHHHHHHhcCCCc
Confidence 67789999999999887532 124455566655543
No 299
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=81.09 E-value=0.91 Score=47.20 Aligned_cols=90 Identities=21% Similarity=0.252 Sum_probs=55.3
Q ss_pred hhccccccccCCee-EEeeccCcChHHHHHHHHHc----CCC---cEEeeccccC-CCC--CCCcccEEEecC---cccc
Q 009719 143 VASFGGSMLSENIL-TLSFAPRDSHKAQIQFALER----GIP---AFVAMLGTRR-LPF--PAFSFDIVHCSR---CLIP 208 (527)
Q Consensus 143 vgsfga~Ll~r~V~-~msiAp~D~seaqvq~A~eR----g~p---a~~~v~dae~-LPF--pD~SFDlV~cs~---~l~h 208 (527)
+|+|+-+.+..|+. ++++ |.|...++.|++. |+. ..+..+|+.. |.- ..+.||+|++.= .-..
T Consensus 134 TGgfsv~Aa~gGA~~v~~V---D~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlDPPsF~k~~ 210 (286)
T PF10672_consen 134 TGGFSVAAAAGGAKEVVSV---DSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIILDPPSFAKSK 210 (286)
T ss_dssp TTHHHHHHHHTTESEEEEE---ES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE--SSEESST
T ss_pred CCHHHHHHHHCCCCEEEEE---eCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEECCCCCCCCH
Confidence 89999988888874 5666 7888888888764 443 3456666422 211 246899999751 1111
Q ss_pred c--ccChHHHHHHHhhcccCCcEEEEecC
Q 009719 209 F--TAYNATYLIEVDRLLRPGGYLVISGP 235 (527)
Q Consensus 209 w--~d~~~~aL~Ei~RVLRPGG~lviS~p 235 (527)
+ ..+-..++.-..++|+|||.|++++.
T Consensus 211 ~~~~~~y~~L~~~a~~ll~~gG~l~~~sc 239 (286)
T PF10672_consen 211 FDLERDYKKLLRRAMKLLKPGGLLLTCSC 239 (286)
T ss_dssp CEHHHHHHHHHHHHHHTEEEEEEEEEEE-
T ss_pred HHHHHHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 1 11112377888999999999998775
No 300
>PLN02366 spermidine synthase
Probab=80.55 E-value=0.74 Score=48.16 Aligned_cols=105 Identities=18% Similarity=0.249 Sum_probs=53.9
Q ss_pred CCCeeeEeecCCCccchhhhccCCC-eeEEEecCCCCC------CchhHhhhccc----ccc-ccccCCCCCCC-CCccc
Q 009719 371 TPAIRNIMDMNAFFGGFAAALTSDP-VWVMNVVPARKS------STLSVIYDRGL----IGV-YHDWCEPFSTY-PRTYD 437 (527)
Q Consensus 371 ~~~iRnvmDm~ag~GgFaAaL~~~~-VwvMnvvp~~~~------ntl~vi~eRGL----iG~-~hdwce~fstY-PrtyD 437 (527)
...-++|||+|+|.|+.+..+.+.+ |.-+-+|=.+.. ..++-+ ..|+ +-+ ..|=-+-.... .+.||
T Consensus 89 ~~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~-~~~~~dpRv~vi~~Da~~~l~~~~~~~yD 167 (308)
T PLN02366 89 IPNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDL-AVGFDDPRVNLHIGDGVEFLKNAPEGTYD 167 (308)
T ss_pred CCCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhh-ccccCCCceEEEEChHHHHHhhccCCCCC
Confidence 3457899999999999999887764 433322222210 111110 0011 001 11100001123 36899
Q ss_pred hhhhcCccccccCCCCCCCCCcccccceeecccccCCcEEEEeC
Q 009719 438 LIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 481 (527)
Q Consensus 438 LiHa~~~fs~~~~~~~~~~rC~~~~illEmDRILRP~G~~iird 481 (527)
+|-++. +.... ....---..++-.+-|.|+|||.+++..
T Consensus 168 vIi~D~-~dp~~----~~~~L~t~ef~~~~~~~L~pgGvlv~q~ 206 (308)
T PLN02366 168 AIIVDS-SDPVG----PAQELFEKPFFESVARALRPGGVVCTQA 206 (308)
T ss_pred EEEEcC-CCCCC----chhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence 997652 32211 0000001346677899999999998753
No 301
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=80.55 E-value=0.74 Score=48.33 Aligned_cols=72 Identities=14% Similarity=0.143 Sum_probs=43.1
Q ss_pred eeEeecCCCccchhhhccCCCeeEEEecCCCCC-CchhHhhhccc-c------cccccc-CCCCCCCCCccchhhhcCcc
Q 009719 375 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGL-I------GVYHDW-CEPFSTYPRTYDLIHVSGIE 445 (527)
Q Consensus 375 RnvmDm~ag~GgFaAaL~~~~VwvMnvvp~~~~-ntl~vi~eRGL-i------G~~hdw-ce~fstYPrtyDLiHa~~~f 445 (527)
.+|||+|||.|.++..|.+... +|+-.|-. +-|.+.-+|.- . +.--++ +..+...+.+||+|=|..++
T Consensus 146 ~~VLDlGcGtG~~a~~la~~g~---~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l~~~fD~Vv~~~vL 222 (315)
T PLN02585 146 VTVCDAGCGTGSLAIPLALEGA---IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESLSGKYDTVTCLDVL 222 (315)
T ss_pred CEEEEecCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhcCCCcCEEEEcCEE
Confidence 4799999999999999987653 44444443 55555555421 0 010111 11122336889999887777
Q ss_pred cccc
Q 009719 446 SLIK 449 (527)
Q Consensus 446 s~~~ 449 (527)
.++.
T Consensus 223 ~H~p 226 (315)
T PLN02585 223 IHYP 226 (315)
T ss_pred EecC
Confidence 6653
No 302
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=79.68 E-value=4.5 Score=41.95 Aligned_cols=90 Identities=16% Similarity=0.108 Sum_probs=57.6
Q ss_pred hhccccccccCCeeEEeeccCcChHHHHHHHHHc----CCC-cEEeeccccCCCC-CCCcccEEEecCcccccccChHHH
Q 009719 143 VASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIP-AFVAMLGTRRLPF-PAFSFDIVHCSRCLIPFTAYNATY 216 (527)
Q Consensus 143 vgsfga~Ll~r~V~~msiAp~D~seaqvq~A~eR----g~p-a~~~v~dae~LPF-pD~SFDlV~cs~~l~hw~d~~~~a 216 (527)
+|.++-.|..++..+.. .|.++.+++.|++. ++. +.+..+|+..+.. .++.||+|++.- +...-.. .
T Consensus 184 ~G~~sl~la~~~~~V~g---vD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dP---Pr~G~~~-~ 256 (315)
T PRK03522 184 VGGFGLHCATPGMQLTG---IEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVNP---PRRGIGK-E 256 (315)
T ss_pred CCHHHHHHHhcCCEEEE---EeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEECC---CCCCccH-H
Confidence 56666677766643333 37788888887643 553 5677788776543 356899999762 2211122 3
Q ss_pred HHHHhhcccCCcEEEEecCCCCC
Q 009719 217 LIEVDRLLRPGGYLVISGPPVQW 239 (527)
Q Consensus 217 L~Ei~RVLRPGG~lviS~pp~~~ 239 (527)
+.+...-++|++.+++|-.|...
T Consensus 257 ~~~~l~~~~~~~ivyvsc~p~t~ 279 (315)
T PRK03522 257 LCDYLSQMAPRFILYSSCNAQTM 279 (315)
T ss_pred HHHHHHHcCCCeEEEEECCcccc
Confidence 44455557899999998877654
No 303
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=79.14 E-value=2.8 Score=43.22 Aligned_cols=45 Identities=29% Similarity=0.530 Sum_probs=34.0
Q ss_pred CCCCCCcccEEEecCc--cc--ccccChH-HHHHHHhhcccCCcEEEEec
Q 009719 190 LPFPAFSFDIVHCSRC--LI--PFTAYNA-TYLIEVDRLLRPGGYLVISG 234 (527)
Q Consensus 190 LPFpD~SFDlV~cs~~--l~--hw~d~~~-~aL~Ei~RVLRPGG~lviS~ 234 (527)
|-+-..-||+|.|-.. .+ +|.|++- .+|+.+.|.|.|||+||+-.
T Consensus 160 l~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEP 209 (288)
T KOG2899|consen 160 LDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEP 209 (288)
T ss_pred hhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcC
Confidence 4556788999998642 23 4666553 49999999999999999864
No 304
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=78.98 E-value=2.3 Score=46.27 Aligned_cols=20 Identities=25% Similarity=0.537 Sum_probs=18.2
Q ss_pred ccceeecccccCCcEEEEeC
Q 009719 462 DLMVEMDRMLRPEGTVVVRD 481 (527)
Q Consensus 462 ~illEmDRILRP~G~~iird 481 (527)
.+|-++=|+|||||.+++..
T Consensus 358 ~iL~~a~~~lkpgG~lvyst 377 (445)
T PRK14904 358 ELLDHAASLLKPGGVLVYAT 377 (445)
T ss_pred HHHHHHHHhcCCCcEEEEEe
Confidence 58889999999999999985
No 305
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=78.12 E-value=4.3 Score=42.75 Aligned_cols=96 Identities=24% Similarity=0.246 Sum_probs=63.4
Q ss_pred hhhhccccccccC----CeeEEeeccCcChHHHHHH----HHHcCCC--cEEeeccccC---CCCCCCcccEEEecCccc
Q 009719 141 SKVASFGGSMLSE----NILTLSFAPRDSHKAQIQF----ALERGIP--AFVAMLGTRR---LPFPAFSFDIVHCSRCLI 207 (527)
Q Consensus 141 d~vgsfga~Ll~r----~V~~msiAp~D~seaqvq~----A~eRg~p--a~~~v~dae~---LPFpD~SFDlV~cs~~l~ 207 (527)
|.-|+-|.|+++. .....++.-.|.++..|+. +.++|+. +.|.++|+-. |-=-+-..++++.|-...
T Consensus 141 DIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~iVsGL~E 220 (311)
T PF12147_consen 141 DIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLAIVSGLYE 220 (311)
T ss_pred EeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEEEEecchh
Confidence 4356667788763 1112355556767666554 4577875 3677777532 222244568999887777
Q ss_pred ccccChH--HHHHHHhhcccCCcEEEEecCC
Q 009719 208 PFTAYNA--TYLIEVDRLLRPGGYLVISGPP 236 (527)
Q Consensus 208 hw~d~~~--~aL~Ei~RVLRPGG~lviS~pp 236 (527)
-++|+.. ..|.-+.+.|.|||++++++.|
T Consensus 221 lF~Dn~lv~~sl~gl~~al~pgG~lIyTgQP 251 (311)
T PF12147_consen 221 LFPDNDLVRRSLAGLARALEPGGYLIYTGQP 251 (311)
T ss_pred hCCcHHHHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 7777653 3788999999999999999854
No 306
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=77.59 E-value=1.2 Score=48.47 Aligned_cols=102 Identities=17% Similarity=0.212 Sum_probs=51.9
Q ss_pred eeEeecCCCccchhhhccC---CCeeEEEecCCCCC-CchhHhhhc----ccc---ccccccCCCCCCC-CCccchhhhc
Q 009719 375 RNIMDMNAFFGGFAAALTS---DPVWVMNVVPARKS-STLSVIYDR----GLI---GVYHDWCEPFSTY-PRTYDLIHVS 442 (527)
Q Consensus 375 RnvmDm~ag~GgFaAaL~~---~~VwvMnvvp~~~~-ntl~vi~eR----GLi---G~~hdwce~fstY-PrtyDLiHa~ 442 (527)
.+|+||+||.||.+.++.. ..-- |+-.|.. +-|..+-++ |+- -+..|..+ ++.+ +..||.|=++
T Consensus 239 ~~VLD~cagpGgkt~~la~~~~~~g~---V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~-l~~~~~~~fD~Vl~D 314 (431)
T PRK14903 239 LRVLDTCAAPGGKTTAIAELMKDQGK---ILAVDISREKIQLVEKHAKRLKLSSIEIKIADAER-LTEYVQDTFDRILVD 314 (431)
T ss_pred CEEEEeCCCccHHHHHHHHHcCCCCE---EEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhh-hhhhhhccCCEEEEC
Confidence 3699999999998766543 2222 2223333 444443322 441 12233332 2212 3678987654
Q ss_pred Ccccccc----CCCCCCCCC---c-------ccccceeecccccCCcEEEEeC
Q 009719 443 GIESLIK----NPGSNKNSC---S-------LVDLMVEMDRMLRPEGTVVVRD 481 (527)
Q Consensus 443 ~~fs~~~----~~~~~~~rC---~-------~~~illEmDRILRP~G~~iird 481 (527)
---|... .|... .+- . -..||-+.=+.|+|||.++.+.
T Consensus 315 aPCsg~G~~~~~p~~~-~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsT 366 (431)
T PRK14903 315 APCTSLGTARNHPEVL-RRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYST 366 (431)
T ss_pred CCCCCCccccCChHHH-HhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 2222110 00000 000 0 1356778889999999999983
No 307
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=77.38 E-value=3 Score=44.55 Aligned_cols=44 Identities=18% Similarity=0.294 Sum_probs=37.2
Q ss_pred cCCCCCCCcccEEEecCcccccccChH-HHHHHHhhcccCCcEEEEecC
Q 009719 188 RRLPFPAFSFDIVHCSRCLIPFTAYNA-TYLIEVDRLLRPGGYLVISGP 235 (527)
Q Consensus 188 e~LPFpD~SFDlV~cs~~l~hw~d~~~-~aL~Ei~RVLRPGG~lviS~p 235 (527)
+.+|=.| +|++-+|++||.|.+- .+|+-+..-|+|||.+++-..
T Consensus 232 q~~P~~d----aI~mkWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 232 QDTPKGD----AIWMKWILHDWTDEDCVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred ccCCCcC----eEEEEeecccCChHHHHHHHHHHHHhCCCCCEEEEEec
Confidence 3367665 9999999999998773 599999999999999999654
No 308
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=76.75 E-value=5 Score=43.29 Aligned_cols=88 Identities=15% Similarity=0.130 Sum_probs=53.9
Q ss_pred hhccccccccCCeeEEeeccCcChHHHHHHHHHc----CCC-cEEeeccccC----CCCCCCcccEEEecCcccccccCh
Q 009719 143 VASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIP-AFVAMLGTRR----LPFPAFSFDIVHCSRCLIPFTAYN 213 (527)
Q Consensus 143 vgsfga~Ll~r~V~~msiAp~D~seaqvq~A~eR----g~p-a~~~v~dae~----LPFpD~SFDlV~cs~~l~hw~d~~ 213 (527)
+|.++..|....-.++ ..|.++.+++.|++. ++. +.+..+|+.. +++.+++||+|+..--. ..-.
T Consensus 303 ~G~~sl~la~~~~~V~---~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~dPPr---~G~~ 376 (431)
T TIGR00479 303 VGTFTLPLAKQAKSVV---GIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLDPPR---KGCA 376 (431)
T ss_pred cCHHHHHHHHhCCEEE---EEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEECcCC---CCCC
Confidence 5666666655433223 336677888888753 443 4566777643 34667889999965321 1111
Q ss_pred HHHHHHHhhcccCCcEEEEecCCC
Q 009719 214 ATYLIEVDRLLRPGGYLVISGPPV 237 (527)
Q Consensus 214 ~~aL~Ei~RVLRPGG~lviS~pp~ 237 (527)
..++.++.+ |+|++.+++|-.|.
T Consensus 377 ~~~l~~l~~-l~~~~ivyvsc~p~ 399 (431)
T TIGR00479 377 AEVLRTIIE-LKPERIVYVSCNPA 399 (431)
T ss_pred HHHHHHHHh-cCCCEEEEEcCCHH
Confidence 236666665 89999888886543
No 309
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=76.48 E-value=2.1 Score=43.03 Aligned_cols=117 Identities=15% Similarity=0.185 Sum_probs=70.4
Q ss_pred eeEeecCCCccchhhhccCC--CeeEEEecCCCC--CCchhHhhhccc--ccccc-ccCCCCCCCC-C-ccchhhhcCcc
Q 009719 375 RNIMDMNAFFGGFAAALTSD--PVWVMNVVPARK--SSTLSVIYDRGL--IGVYH-DWCEPFSTYP-R-TYDLIHVSGIE 445 (527)
Q Consensus 375 RnvmDm~ag~GgFaAaL~~~--~VwvMnvvp~~~--~ntl~vi~eRGL--iG~~h-dwce~fstYP-r-tyDLiHa~~~f 445 (527)
..++++|||.|.|-++|..+ ..-.+-|-.... -.-+.-|-+.|| |-++. |=-+-+..++ . +.|-|+- .|
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i--~F 127 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYI--NF 127 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEE--EC
Confidence 58999999999999998543 333333333322 145667778888 44442 2222233333 4 8887765 35
Q ss_pred c-cccCCCC--CCCCCcccccceeecccccCCcEEEEe-CCHHHHHH-HHHHHhc
Q 009719 446 S-LIKNPGS--NKNSCSLVDLMVEMDRMLRPEGTVVVR-DSPEVIDK-VSRIANT 495 (527)
Q Consensus 446 s-~~~~~~~--~~~rC~~~~illEmDRILRP~G~~iir-d~~~~~~~-i~~i~~~ 495 (527)
. .|. +. .+.|=--...|=++-|+|+|||.+.+. |..++.+. +......
T Consensus 128 PDPWp--KkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~y~e~~~~~~~~~ 180 (227)
T COG0220 128 PDPWP--KKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEEYFEWMMLEVLEH 180 (227)
T ss_pred CCCCC--CccccccccCCHHHHHHHHHHccCCCEEEEEecCHHHHHHHHHHHHhc
Confidence 4 342 11 223333357888999999999999887 44555555 5555443
No 310
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=76.32 E-value=3 Score=44.96 Aligned_cols=112 Identities=15% Similarity=0.218 Sum_probs=56.7
Q ss_pred eeEeecCCCccchhhhccCCCeeEEEecCCCCC-CchhHhh----hccc--c-ccccccCCCCCCCC---CccchhhhcC
Q 009719 375 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIY----DRGL--I-GVYHDWCEPFSTYP---RTYDLIHVSG 443 (527)
Q Consensus 375 RnvmDm~ag~GgFaAaL~~~~VwvMnvvp~~~~-ntl~vi~----eRGL--i-G~~hdwce~fstYP---rtyDLiHa~~ 443 (527)
..|+|++||+|.|+..|.+.---| +-.+.. +-+..+- ..|+ + =+..|..+.++.++ .+||+|=.+
T Consensus 294 ~~vLDl~cG~G~~sl~la~~~~~V---~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~d- 369 (431)
T TIGR00479 294 ELVVDAYCGVGTFTLPLAKQAKSV---VGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLD- 369 (431)
T ss_pred CEEEEcCCCcCHHHHHHHHhCCEE---EEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEEC-
Confidence 479999999999999997643222 222221 2222221 1232 1 11122222222221 356765432
Q ss_pred ccccccCCCCCCCCCcccccceeecccccCCcEEEEeCCHHHHHHHHHHHhcCCceeE
Q 009719 444 IESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRIANTVRWTAA 501 (527)
Q Consensus 444 ~fs~~~~~~~~~~rC~~~~illEmDRILRP~G~~iird~~~~~~~i~~i~~~l~W~~~ 501 (527)
|...+ + ...++-++.+ |+|+|.++++-++..+.+--+.+..-.|++.
T Consensus 370 -------PPr~G--~-~~~~l~~l~~-l~~~~ivyvsc~p~tlard~~~l~~~gy~~~ 416 (431)
T TIGR00479 370 -------PPRKG--C-AAEVLRTIIE-LKPERIVYVSCNPATLARDLEFLCKEGYGIT 416 (431)
T ss_pred -------cCCCC--C-CHHHHHHHHh-cCCCEEEEEcCCHHHHHHHHHHHHHCCeeEE
Confidence 22111 1 1233333343 7899999999888776554444444456544
No 311
>PLN02476 O-methyltransferase
Probab=75.81 E-value=2.3 Score=44.16 Aligned_cols=134 Identities=11% Similarity=0.114 Sum_probs=69.5
Q ss_pred CCCCeeeEeecCCCccchhhhccC----C-CeeEEEecCCCCCCchhHhhhcccc---ccc-cccCCCCCC-----CCCc
Q 009719 370 GTPAIRNIMDMNAFFGGFAAALTS----D-PVWVMNVVPARKSSTLSVIYDRGLI---GVY-HDWCEPFST-----YPRT 435 (527)
Q Consensus 370 ~~~~iRnvmDm~ag~GgFaAaL~~----~-~VwvMnvvp~~~~ntl~vi~eRGLi---G~~-hdwce~fst-----YPrt 435 (527)
+-.+-++||++|+++|..+.+|.. . .|+++=.-|....-.-+.+-+-|+- =+. .|-.|.++. ...+
T Consensus 115 ~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~ 194 (278)
T PLN02476 115 QILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSS 194 (278)
T ss_pred HhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCC
Confidence 444578999999999998876643 2 2444433332111111223333431 000 011111111 1346
Q ss_pred cchhhhcCccccccCCCCCCCCCcccccceeecccccCCcEEEEeCC-------------HHH--HHH-HHHHHhcCCce
Q 009719 436 YDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS-------------PEV--IDK-VSRIANTVRWT 499 (527)
Q Consensus 436 yDLiHa~~~fs~~~~~~~~~~rC~~~~illEmDRILRP~G~~iird~-------------~~~--~~~-i~~i~~~l~W~ 499 (527)
||+|=.+.-=. ....++-+.=+.|||||.+|+.+- ... +.+ .+.+...=+++
T Consensus 195 FD~VFIDa~K~------------~Y~~y~e~~l~lL~~GGvIV~DNvL~~G~V~d~~~~d~~t~~ir~fn~~v~~d~~~~ 262 (278)
T PLN02476 195 YDFAFVDADKR------------MYQDYFELLLQLVRVGGVIVMDNVLWHGRVADPLVNDAKTISIRNFNKKLMDDKRVS 262 (278)
T ss_pred CCEEEECCCHH------------HHHHHHHHHHHhcCCCcEEEEecCccCCcccCcccCCHHHHHHHHHHHHHhhCCCEE
Confidence 88765442111 223444455589999999999741 111 222 23345566788
Q ss_pred eEEecCCCCCCCCceEEEEEec
Q 009719 500 AAVHDKEPGSNGREKILVATKS 521 (527)
Q Consensus 500 ~~~~~~e~~~~~~ekiLi~~K~ 521 (527)
..+.-. .+.+++++|+
T Consensus 263 ~~llPi------gDGl~i~~K~ 278 (278)
T PLN02476 263 ISMVPI------GDGMTICRKR 278 (278)
T ss_pred EEEEEe------CCeeEEEEEC
Confidence 776632 3578999885
No 312
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=74.25 E-value=19 Score=36.92 Aligned_cols=119 Identities=19% Similarity=0.215 Sum_probs=70.9
Q ss_pred cCCCCeeeEeecCCCccchhhhccCCC-eeE-EEecCCCCCCchhHhhhccccc--cccccCCCCCCCCCccchhhhcCc
Q 009719 369 LGTPAIRNIMDMNAFFGGFAAALTSDP-VWV-MNVVPARKSSTLSVIYDRGLIG--VYHDWCEPFSTYPRTYDLIHVSGI 444 (527)
Q Consensus 369 i~~~~iRnvmDm~ag~GgFaAaL~~~~-Vwv-Mnvvp~~~~ntl~vi~eRGLiG--~~hdwce~fstYPrtyDLiHa~~~ 444 (527)
+..+.=+-|||+|||.|--++-|.+.. +|+ |-+ ++.-|.++.||-+=| ++.|.-|.+++=|-|||=+-.-+-
T Consensus 46 lp~~~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDi----SpsML~~a~~~e~egdlil~DMG~GlpfrpGtFDg~ISISA 121 (270)
T KOG1541|consen 46 LPGPKSGLILDIGCGSGLSGSVLSDSGHQWIGVDI----SPSMLEQAVERELEGDLILCDMGEGLPFRPGTFDGVISISA 121 (270)
T ss_pred CCCCCCcEEEEeccCCCcchheeccCCceEEeecC----CHHHHHHHHHhhhhcCeeeeecCCCCCCCCCccceEEEeee
Confidence 556678899999999998888887776 454 222 347778888754432 344556888888999995322111
Q ss_pred cccccCCCCCCCCCccc-----ccceeecccccCCcEEEEeCC---HHHHHHHHHHHh
Q 009719 445 ESLIKNPGSNKNSCSLV-----DLMVEMDRMLRPEGTVVVRDS---PEVIDKVSRIAN 494 (527)
Q Consensus 445 fs~~~~~~~~~~rC~~~-----~illEmDRILRP~G~~iird~---~~~~~~i~~i~~ 494 (527)
. +|- -.....|... .+.--.-..|.+|+-.+++=- .+.++.|..-|.
T Consensus 122 v-QWL--cnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~q~d~i~~~a~ 176 (270)
T KOG1541|consen 122 V-QWL--CNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENEAQIDMIMQQAM 176 (270)
T ss_pred e-eee--cccCccccChHHHHHHHhhhhhhhhccCceeEEEecccchHHHHHHHHHHH
Confidence 1 121 0001122221 223335678899999999843 334444444433
No 313
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=72.69 E-value=3.5 Score=38.88 Aligned_cols=24 Identities=33% Similarity=0.484 Sum_probs=19.8
Q ss_pred hHHHHHHHhhcccCCcEEEEecCC
Q 009719 213 NATYLIEVDRLLRPGGYLVISGPP 236 (527)
Q Consensus 213 ~~~aL~Ei~RVLRPGG~lviS~pp 236 (527)
....+.|+.|||||||.+++....
T Consensus 35 ~~~~~~~~~rvLk~~g~~~i~~~~ 58 (231)
T PF01555_consen 35 MEEWLKECYRVLKPGGSIFIFIDD 58 (231)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEE-C
T ss_pred HHHHHHHHHhhcCCCeeEEEEecc
Confidence 344899999999999999998763
No 314
>PHA03411 putative methyltransferase; Provisional
Probab=72.40 E-value=2 Score=44.73 Aligned_cols=101 Identities=11% Similarity=0.118 Sum_probs=54.8
Q ss_pred eeEeecCCCccchhhhccCC-CeeEEEecCCCCC-CchhHhhhccccccccccCCCCCCC--CCccchhhhcCccccccC
Q 009719 375 RNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVIYDRGLIGVYHDWCEPFSTY--PRTYDLIHVSGIESLIKN 450 (527)
Q Consensus 375 RnvmDm~ag~GgFaAaL~~~-~VwvMnvvp~~~~-ntl~vi~eRGLiG~~hdwce~fstY--PrtyDLiHa~~~fs~~~~ 450 (527)
..|||+|||.|.|+.++..+ +- .+|+-++.. ..+...-++ +..+ .=.+.-+..+ .++||+|=++--|.....
T Consensus 66 grVLDLGcGsGilsl~la~r~~~--~~V~gVDisp~al~~Ar~n-~~~v-~~v~~D~~e~~~~~kFDlIIsNPPF~~l~~ 141 (279)
T PHA03411 66 GKVLDLCAGIGRLSFCMLHRCKP--EKIVCVELNPEFARIGKRL-LPEA-EWITSDVFEFESNEKFDVVISNPPFGKINT 141 (279)
T ss_pred CeEEEcCCCCCHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHh-CcCC-EEEECchhhhcccCCCcEEEEcCCccccCc
Confidence 47999999999998777443 11 122323322 344433332 1110 0011222233 368999988777764320
Q ss_pred CCCCCC-----------CC-cccccceeecccccCCcEEEEe
Q 009719 451 PGSNKN-----------SC-SLVDLMVEMDRMLRPEGTVVVR 480 (527)
Q Consensus 451 ~~~~~~-----------rC-~~~~illEmDRILRP~G~~iir 480 (527)
....+ .| .+...+-+.-++|.|+|.+++-
T Consensus 142 -~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ 182 (279)
T PHA03411 142 -TDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA 182 (279)
T ss_pred -hhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence 00011 11 2467778889999999977664
No 315
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=72.03 E-value=24 Score=37.30 Aligned_cols=164 Identities=18% Similarity=0.169 Sum_probs=86.8
Q ss_pred hhhHHHHHHHHHHHHHhhhccCCCCeeeEeecCCCccchhhhccC-C-CeeEE--EecCCC---C-CCchhHhhhccccc
Q 009719 349 ADSRRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTS-D-PVWVM--NVVPAR---K-SSTLSVIYDRGLIG 420 (527)
Q Consensus 349 ~d~~~W~~~v~~Y~~~l~~~i~~~~iRnvmDm~ag~GgFaAaL~~-~-~VwvM--nvvp~~---~-~ntl~vi~eRGLiG 420 (527)
-.|+.|-..|-.=.+... ...+. -++|.|||.|.-+-+|.. . ++.|. -+-++. + +|- +-.---|-|+
T Consensus 128 pETEE~V~~Vid~~~~~~--~~~~~--~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~-qr~~l~g~i~ 202 (328)
T KOG2904|consen 128 PETEEWVEAVIDALNNSE--HSKHT--HILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENA-QRLKLSGRIE 202 (328)
T ss_pred ccHHHHHHHHHHHHhhhh--hcccc--eEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHH-HHHhhcCceE
Confidence 467899998866443221 22222 899999999988877733 2 33332 222211 1 121 1122235577
Q ss_pred cccc--cCCCCCCCC---CccchhhhcCccccccC-------------CCC--CCCCCc--ccccceeecccccCCcEEE
Q 009719 421 VYHD--WCEPFSTYP---RTYDLIHVSGIESLIKN-------------PGS--NKNSCS--LVDLMVEMDRMLRPEGTVV 478 (527)
Q Consensus 421 ~~hd--wce~fstYP---rtyDLiHa~~~fs~~~~-------------~~~--~~~rC~--~~~illEmDRILRP~G~~i 478 (527)
+.|. =-+.|.+|| .+||+|=++--...-.| +.+ ++..|. +..+..=.=|.|+|||+++
T Consensus 203 v~~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~ 282 (328)
T KOG2904|consen 203 VIHNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQ 282 (328)
T ss_pred EEecccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEE
Confidence 7765 344566777 88998877633221110 000 011111 1234445679999999999
Q ss_pred EeCC-----HHHHHHH-HHHHhcCCceeEEecCCCCCCCCceEEEEEe
Q 009719 479 VRDS-----PEVIDKV-SRIANTVRWTAAVHDKEPGSNGREKILVATK 520 (527)
Q Consensus 479 ird~-----~~~~~~i-~~i~~~l~W~~~~~~~e~~~~~~ekiLi~~K 520 (527)
+.-. ...+..+ ....+.--|.+.+. .+-.+.+++++..+
T Consensus 283 le~~~~~~~~~lv~~~m~s~~~d~~~~~~v~---~Df~~~~Rfv~i~r 327 (328)
T KOG2904|consen 283 LELVERKEHSYLVRIWMISLKDDSNGKAAVV---SDFAGRPRFVIIHR 327 (328)
T ss_pred EEecccccCcHHHHHHHHhchhhccchhhee---ecccCCcceEEEEe
Confidence 9732 3333333 33344445555544 23345677777654
No 316
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=70.65 E-value=2.6 Score=45.59 Aligned_cols=44 Identities=14% Similarity=0.105 Sum_probs=28.5
Q ss_pred ccccceeecccccCCcEEEEeC------CHHHHHHHHHHHhcCCceeEEe
Q 009719 460 LVDLMVEMDRMLRPEGTVVVRD------SPEVIDKVSRIANTVRWTAAVH 503 (527)
Q Consensus 460 ~~~illEmDRILRP~G~~iird------~~~~~~~i~~i~~~l~W~~~~~ 503 (527)
+.+++.-.-++|+|||.++.-. ..+..+.+.+-+..-..++++.
T Consensus 318 y~~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~~~v~~aa~~~~~~~~~l 367 (396)
T PRK15128 318 YKDINMLAIQLLNPGGILLTFSCSGLMTSDLFQKIIADAAIDAGRDVQFI 367 (396)
T ss_pred HHHHHHHHHHHcCCCeEEEEEeCCCcCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 4455555668999999999853 2335555666666666665544
No 317
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=68.90 E-value=7.2 Score=41.71 Aligned_cols=83 Identities=16% Similarity=0.145 Sum_probs=51.7
Q ss_pred hhcccccccc-CCeeEEeeccCcChHHHHHHHHHcCCCcEEeeccccCCCCCCCcccEEEecCcccccccChHHHHHHHh
Q 009719 143 VASFGGSMLS-ENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVD 221 (527)
Q Consensus 143 vgsfga~Ll~-r~V~~msiAp~D~seaqvq~A~eRg~pa~~~v~dae~LPFpD~SFDlV~cs~~l~hw~d~~~~aL~Ei~ 221 (527)
+|..|-.+.. .+..+..| |.++...++|++-|....+...+...+.--.+.||+|+..-. . ..+....
T Consensus 178 lGh~avQ~Aka~ga~Via~---~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-~-------~~~~~~l 246 (339)
T COG1064 178 LGHMAVQYAKAMGAEVIAI---TRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-P-------ATLEPSL 246 (339)
T ss_pred HHHHHHHHHHHcCCeEEEE---eCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-h-------hhHHHHH
Confidence 3444444433 45444444 567788888988876544442233333222234999996533 1 2788899
Q ss_pred hcccCCcEEEEecCC
Q 009719 222 RLLRPGGYLVISGPP 236 (527)
Q Consensus 222 RVLRPGG~lviS~pp 236 (527)
+.||+||++++-+-+
T Consensus 247 ~~l~~~G~~v~vG~~ 261 (339)
T COG1064 247 KALRRGGTLVLVGLP 261 (339)
T ss_pred HHHhcCCEEEEECCC
Confidence 999999999998754
No 318
>PLN02476 O-methyltransferase
Probab=68.02 E-value=6.3 Score=40.97 Aligned_cols=66 Identities=18% Similarity=0.262 Sum_probs=40.8
Q ss_pred cChHHHHHHHHH----cCCC--cEEeeccc-cCCC-C----CCCcccEEEecCcccccccChHHHHHHHhhcccCCcEEE
Q 009719 164 DSHKAQIQFALE----RGIP--AFVAMLGT-RRLP-F----PAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLV 231 (527)
Q Consensus 164 D~seaqvq~A~e----Rg~p--a~~~v~da-e~LP-F----pD~SFDlV~cs~~l~hw~d~~~~aL~Ei~RVLRPGG~lv 231 (527)
|..+...++|++ .|+. ..+..+++ +-|| + .+++||+|+...- ...-..++.++.+.|||||.++
T Consensus 150 E~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~VFIDa~----K~~Y~~y~e~~l~lL~~GGvIV 225 (278)
T PLN02476 150 ERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDFAFVDAD----KRMYQDYFELLLQLVRVGGVIV 225 (278)
T ss_pred ECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCEEEECCC----HHHHHHHHHHHHHhcCCCcEEE
Confidence 444455555543 3554 45556664 3343 2 2468999996532 1111238899999999999998
Q ss_pred Ee
Q 009719 232 IS 233 (527)
Q Consensus 232 iS 233 (527)
+-
T Consensus 226 ~D 227 (278)
T PLN02476 226 MD 227 (278)
T ss_pred Ee
Confidence 74
No 319
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=67.57 E-value=12 Score=38.02 Aligned_cols=48 Identities=21% Similarity=0.251 Sum_probs=37.1
Q ss_pred EEeeccccCCCCCCCcccEEEecCcccccccChHHHHHHHhhcccCCcEEEEecC
Q 009719 181 FVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 235 (527)
Q Consensus 181 ~~~v~dae~LPFpD~SFDlV~cs~~l~hw~d~~~~aL~Ei~RVLRPGG~lviS~p 235 (527)
.++++|....-=+.+-||.|||-... . ....|+.-.|+|||++++-.-
T Consensus 147 ~ivvGDgr~g~~e~a~YDaIhvGAaa------~-~~pq~l~dqL~~gGrllip~~ 194 (237)
T KOG1661|consen 147 SIVVGDGRKGYAEQAPYDAIHVGAAA------S-ELPQELLDQLKPGGRLLIPVG 194 (237)
T ss_pred EEEeCCccccCCccCCcceEEEccCc------c-ccHHHHHHhhccCCeEEEeec
Confidence 45678887776678999999998432 2 267888899999999998543
No 320
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=65.93 E-value=11 Score=36.76 Aligned_cols=138 Identities=18% Similarity=0.289 Sum_probs=77.3
Q ss_pred hhhHHHHHHHHHHHHHhhhccCCCCeeeEeecCCCccchhh---hccCCCeeEEEecCCCCC-Cch-hHhhhccc--ccc
Q 009719 349 ADSRRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAA---ALTSDPVWVMNVVPARKS-STL-SVIYDRGL--IGV 421 (527)
Q Consensus 349 ~d~~~W~~~v~~Y~~~l~~~i~~~~iRnvmDm~ag~GgFaA---aL~~~~VwvMnvvp~~~~-ntl-~vi~eRGL--iG~ 421 (527)
...+.|.+++-.=+..+ +.+..... +++|+|+| |||=+ |+.....=+.=|=+.... +=| .++-+=|| +=+
T Consensus 26 ~~~~~~~~Hi~DSL~~~-~~~~~~~~-~~lDiGSG-aGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v 102 (184)
T PF02527_consen 26 DPEEIWERHILDSLALL-PFLPDFGK-KVLDIGSG-AGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEV 102 (184)
T ss_dssp SHHHHHHHHHHHHHGGG-GCS-CCCS-EEEEETST-TTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEE
T ss_pred CHHHHHHHHHHHHHHhh-hhhccCCc-eEEecCCC-CCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEE
Confidence 44578887665433322 23443333 69999999 44522 333222222222222222 212 34555666 557
Q ss_pred ccccCCCCCCCCCccchhhhcCccccccCCCCCCCCCcccccceeecccccCCcEEEEeC---CHHHHHHHHHHHhcCCc
Q 009719 422 YHDWCEPFSTYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD---SPEVIDKVSRIANTVRW 498 (527)
Q Consensus 422 ~hdwce~fstYPrtyDLiHa~~~fs~~~~~~~~~~rC~~~~illEmDRILRP~G~~iird---~~~~~~~i~~i~~~l~W 498 (527)
+|..-|. ..++..||+|=|- -| ..+..++--+-+.|+|||.++.-- ..+.+++.++-.+.+.+
T Consensus 103 ~~~R~E~-~~~~~~fd~v~aR-Av------------~~l~~l~~~~~~~l~~~G~~l~~KG~~~~~El~~~~~~~~~~~~ 168 (184)
T PF02527_consen 103 INGRAEE-PEYRESFDVVTAR-AV------------APLDKLLELARPLLKPGGRLLAYKGPDAEEELEEAKKAWKKLGL 168 (184)
T ss_dssp EES-HHH-TTTTT-EEEEEEE-SS------------SSHHHHHHHHGGGEEEEEEEEEEESS--HHHHHTHHHHHHCCCE
T ss_pred EEeeecc-cccCCCccEEEee-hh------------cCHHHHHHHHHHhcCCCCEEEEEcCCChHHHHHHHHhHHHHhCC
Confidence 7777777 5578999998762 22 334556656678899999888763 34566677777777777
Q ss_pred eeEEe
Q 009719 499 TAAVH 503 (527)
Q Consensus 499 ~~~~~ 503 (527)
+....
T Consensus 169 ~~~~v 173 (184)
T PF02527_consen 169 KVLSV 173 (184)
T ss_dssp EEEEE
T ss_pred EEeee
Confidence 76543
No 321
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=65.60 E-value=32 Score=33.99 Aligned_cols=78 Identities=19% Similarity=0.133 Sum_probs=47.2
Q ss_pred cCCeeEEeeccCcChHHHHHHHHHc-CCCc-EEeeccc-cCCCCCCCcccEEEecCcccccccChHHHHHHHhhcccCCc
Q 009719 152 SENILTLSFAPRDSHKAQIQFALER-GIPA-FVAMLGT-RRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGG 228 (527)
Q Consensus 152 ~r~V~~msiAp~D~seaqvq~A~eR-g~pa-~~~v~da-e~LPFpD~SFDlV~cs~~l~hw~d~~~~aL~Ei~RVLRPGG 228 (527)
...-.+..|........+++...++ |++. .+..+++ +.|+=.+ +||.|+..-. -+ .+. .|.....-|||||
T Consensus 56 ~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~-~~daiFIGGg-~~---i~~-ile~~~~~l~~gg 129 (187)
T COG2242 56 GPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLP-SPDAIFIGGG-GN---IEE-ILEAAWERLKPGG 129 (187)
T ss_pred CCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCC-CCCEEEECCC-CC---HHH-HHHHHHHHcCcCC
Confidence 3344455553332223333333343 5654 4555665 4455323 8999998766 33 333 8999999999999
Q ss_pred EEEEecC
Q 009719 229 YLVISGP 235 (527)
Q Consensus 229 ~lviS~p 235 (527)
++|+..-
T Consensus 130 rlV~nai 136 (187)
T COG2242 130 RLVANAI 136 (187)
T ss_pred eEEEEee
Confidence 9998653
No 322
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=65.25 E-value=1.1 Score=44.14 Aligned_cols=134 Identities=18% Similarity=0.278 Sum_probs=71.1
Q ss_pred CCCCeeeEeecCCCccchhhhc----c-CCCeeEEEecCCCCCCchhHhhhccc---cccc-cccCCCCCC----C-CCc
Q 009719 370 GTPAIRNIMDMNAFFGGFAAAL----T-SDPVWVMNVVPARKSSTLSVIYDRGL---IGVY-HDWCEPFST----Y-PRT 435 (527)
Q Consensus 370 ~~~~iRnvmDm~ag~GgFaAaL----~-~~~VwvMnvvp~~~~ntl~vi~eRGL---iG~~-hdwce~fst----Y-Prt 435 (527)
...+-++||.+|+++|==|.+| - +-.|+++-.-|....-.-..+-.-|+ |=+. .|..|.+++ . +.+
T Consensus 42 ~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~ 121 (205)
T PF01596_consen 42 RLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQ 121 (205)
T ss_dssp HHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTS
T ss_pred HhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCc
Confidence 3446889999999988544333 2 23466665544322222223333354 1111 122232222 2 368
Q ss_pred cchhhhcCccccccCCCCCCCCCcccccceeecccccCCcEEEEeCC-------------HH---HHHHHHHHHhcCCce
Q 009719 436 YDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS-------------PE---VIDKVSRIANTVRWT 499 (527)
Q Consensus 436 yDLiHa~~~fs~~~~~~~~~~rC~~~~illEmDRILRP~G~~iird~-------------~~---~~~~i~~i~~~l~W~ 499 (527)
||+|=.+.-=..| ..++-..=+.|||||.+|+.+. .+ +-+-.+.+.+.=+.+
T Consensus 122 fD~VFiDa~K~~y------------~~y~~~~~~ll~~ggvii~DN~l~~G~V~~~~~~~~~~~~ir~f~~~i~~d~~~~ 189 (205)
T PF01596_consen 122 FDFVFIDADKRNY------------LEYFEKALPLLRPGGVIIADNVLWRGSVADPDDEDPKTVAIREFNEYIANDPRFE 189 (205)
T ss_dssp EEEEEEESTGGGH------------HHHHHHHHHHEEEEEEEEEETTTGGGGGGSTTGGSHHHHHHHHHHHHHHH-TTEE
T ss_pred eeEEEEcccccch------------hhHHHHHhhhccCCeEEEEccccccceecCccchhhhHHHHHHHHHHHHhCCCee
Confidence 9998665332222 2233334489999999999852 11 222344456666777
Q ss_pred eEEecCCCCCCCCceEEEEEec
Q 009719 500 AAVHDKEPGSNGREKILVATKS 521 (527)
Q Consensus 500 ~~~~~~e~~~~~~ekiLi~~K~ 521 (527)
+.+... .+.|+|++|+
T Consensus 190 ~~llpi------gdGl~l~~K~ 205 (205)
T PF01596_consen 190 TVLLPI------GDGLTLARKR 205 (205)
T ss_dssp EEEECS------TTEEEEEEE-
T ss_pred EEEEEe------CCeeEEEEEC
Confidence 777633 3679999985
No 323
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=65.02 E-value=7.4 Score=39.16 Aligned_cols=81 Identities=20% Similarity=0.120 Sum_probs=48.5
Q ss_pred hhccccccccCCeeEEeeccCcChHHHHHHHHHcCCCcE-Eeecccc-----CCCCCCCcccEEEecCcccccccChHHH
Q 009719 143 VASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAF-VAMLGTR-----RLPFPAFSFDIVHCSRCLIPFTAYNATY 216 (527)
Q Consensus 143 vgsfga~Ll~r~V~~msiAp~D~seaqvq~A~eRg~pa~-~~v~dae-----~LPFpD~SFDlV~cs~~l~hw~d~~~~a 216 (527)
+|.|+-.|+.+|+. .+...|.+..|+...++...... +...+.+ .++..-..||++++|+++ .
T Consensus 86 tG~~t~~l~~~ga~--~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d~~~~DvsfiS~~~---------~ 154 (228)
T TIGR00478 86 TGGFTDCALQKGAK--EVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFPDFATFDVSFISLIS---------I 154 (228)
T ss_pred CCHHHHHHHHcCCC--EEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCCceeeeEEEeehHh---------H
Confidence 67777777877653 23333777778776554432221 2222333 233222477877777654 5
Q ss_pred HHHHhhcccCCcEEEEecC
Q 009719 217 LIEVDRLLRPGGYLVISGP 235 (527)
Q Consensus 217 L~Ei~RVLRPGG~lviS~p 235 (527)
|..+.+.|+| |.+++--.
T Consensus 155 l~~i~~~l~~-~~~~~L~K 172 (228)
T TIGR00478 155 LPELDLLLNP-NDLTLLFK 172 (228)
T ss_pred HHHHHHHhCc-CeEEEEcC
Confidence 8889999999 87776443
No 324
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=64.71 E-value=2.1 Score=43.10 Aligned_cols=124 Identities=18% Similarity=0.271 Sum_probs=64.3
Q ss_pred CeeeEeecCCCccchhhhccCCCeeEEE-ecCCCCC-CchhHhh--hccccccccccCCCCCC-C--CCccchhhhcCcc
Q 009719 373 AIRNIMDMNAFFGGFAAALTSDPVWVMN-VVPARKS-STLSVIY--DRGLIGVYHDWCEPFST-Y--PRTYDLIHVSGIE 445 (527)
Q Consensus 373 ~iRnvmDm~ag~GgFaAaL~~~~VwvMn-vvp~~~~-ntl~vi~--eRGLiG~~hdwce~fst-Y--PrtyDLiHa~~~f 445 (527)
....++|.|||.|=..-.|+-+-.=.+- |-|...- ++.+--+ +.+-+|.+. |..+-. - +..||+|=+--|.
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~--~~gLQ~f~P~~~~YDlIW~QW~l 132 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFY--CVGLQDFTPEEGKYDLIWIQWCL 132 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEE--ES-GGG----TT-EEEEEEES-G
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCCcceEE--ecCHhhccCCCCcEeEEEehHhh
Confidence 6888999999999888766544332222 2233221 2222111 222233322 222111 1 3699999987777
Q ss_pred ccccCCCCCCCCCcccccceeecccccCCcEEEEeCCH-----------H-----HHHHHHHHHhcCCceeEEecC
Q 009719 446 SLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP-----------E-----VIDKVSRIANTVRWTAAVHDK 505 (527)
Q Consensus 446 s~~~~~~~~~~rC~~~~illEmDRILRP~G~~iird~~-----------~-----~~~~i~~i~~~l~W~~~~~~~ 505 (527)
.+.+ + -++..+|---=.-|||+|.+||.++. | ..+.+++|.+.=-.++...+.
T Consensus 133 ghLT------D-~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~~ 201 (218)
T PF05891_consen 133 GHLT------D-EDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKEEK 201 (218)
T ss_dssp GGS-------H-HHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEEEE
T ss_pred ccCC------H-HHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEEecc
Confidence 6654 2 23445555555679999999998521 1 245667777666666655433
No 325
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=64.49 E-value=11 Score=38.60 Aligned_cols=67 Identities=19% Similarity=0.231 Sum_probs=45.6
Q ss_pred cChHHHHHHHHHc----CCC--cEEeeccccCCCCC---CCcccEEEecCcccccccChHHHHHHHhhcc-cCCcEEEEe
Q 009719 164 DSHKAQIQFALER----GIP--AFVAMLGTRRLPFP---AFSFDIVHCSRCLIPFTAYNATYLIEVDRLL-RPGGYLVIS 233 (527)
Q Consensus 164 D~seaqvq~A~eR----g~p--a~~~v~dae~LPFp---D~SFDlV~cs~~l~hw~d~~~~aL~Ei~RVL-RPGG~lviS 233 (527)
|.++...+.|++. |+. ..+...|...--|+ ++.||+|+-. .+++-. ++..+.++| ||||++..-
T Consensus 72 E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~~~~~DavfLD-----lp~Pw~-~i~~~~~~L~~~gG~i~~f 145 (247)
T PF08704_consen 72 EFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEELESDFDAVFLD-----LPDPWE-AIPHAKRALKKPGGRICCF 145 (247)
T ss_dssp ESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-TTSEEEEEEE-----SSSGGG-GHHHHHHHE-EEEEEEEEE
T ss_pred ccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccccCcccEEEEe-----CCCHHH-HHHHHHHHHhcCCceEEEE
Confidence 6678888888643 554 45566675443443 4789999854 334434 899999999 999999998
Q ss_pred cCC
Q 009719 234 GPP 236 (527)
Q Consensus 234 ~pp 236 (527)
.|.
T Consensus 146 sP~ 148 (247)
T PF08704_consen 146 SPC 148 (247)
T ss_dssp ESS
T ss_pred CCC
Confidence 884
No 326
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=64.16 E-value=5.8 Score=40.47 Aligned_cols=120 Identities=16% Similarity=0.230 Sum_probs=80.3
Q ss_pred ccCCCCeeeEeecCCCccchhhhccCC-CeeEEEecCCCCC-CchhHhhhccc-----cccccccCCCCCCCCCccchhh
Q 009719 368 KLGTPAIRNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVIYDRGL-----IGVYHDWCEPFSTYPRTYDLIH 440 (527)
Q Consensus 368 ~i~~~~iRnvmDm~ag~GgFaAaL~~~-~VwvMnvvp~~~~-ntl~vi~eRGL-----iG~~hdwce~fstYPrtyDLiH 440 (527)
.+.-...|+|.|.|||.|---+-|..+ |.=+ +.=.|+. +-|.-+.+|+. .|=+++||- .+..|||-
T Consensus 25 ~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~--i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~p-----~~~~dllf 97 (257)
T COG4106 25 RVPLERPRRVVDLGCGPGNSTELLARRWPDAV--ITGIDSSPAMLAKAAQRLPDATFEEADLRTWKP-----EQPTDLLF 97 (257)
T ss_pred hCCccccceeeecCCCCCHHHHHHHHhCCCCe--EeeccCCHHHHHHHHHhCCCCceecccHhhcCC-----CCccchhh
Confidence 466678999999999999877777544 3322 2223444 66777777875 588899993 27799999
Q ss_pred hcCccccccCCCCCCCCCcccccceeecccccCCcEEEEe--CCHH--HHHHHHHHHhcCCceeEEe
Q 009719 441 VSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR--DSPE--VIDKVSRIANTVRWTAAVH 503 (527)
Q Consensus 441 a~~~fs~~~~~~~~~~rC~~~~illEmDRILRP~G~~iir--d~~~--~~~~i~~i~~~l~W~~~~~ 503 (527)
++-+|.-.- .+ ..+|--.=--|+|||.+-+. |+.+ .-.-|.+.++..-|.....
T Consensus 98 aNAvlqWlp-----dH----~~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~p~~~~l~ 155 (257)
T COG4106 98 ANAVLQWLP-----DH----PELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETADEAPFAQELG 155 (257)
T ss_pred hhhhhhhcc-----cc----HHHHHHHHHhhCCCceEEEECCCccCchhHHHHHHHHhcCchhhhhC
Confidence 998886332 23 23333333358999999998 3322 2345677777777766554
No 327
>PRK00536 speE spermidine synthase; Provisional
Probab=63.43 E-value=8.6 Score=39.59 Aligned_cols=67 Identities=10% Similarity=0.073 Sum_probs=41.7
Q ss_pred eeccCcChHHHHHHHHHcC------C--C-cEEeeccccCCCCCCCcccEEEecCcccccccChHHHHHHHhhcccCCcE
Q 009719 159 SFAPRDSHKAQIQFALERG------I--P-AFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGY 229 (527)
Q Consensus 159 siAp~D~seaqvq~A~eRg------~--p-a~~~v~dae~LPFpD~SFDlV~cs~~l~hw~d~~~~aL~Ei~RVLRPGG~ 229 (527)
.+.-.|+.++.++++++-- . | +.+.. .. .--..++||+|++... .+.. +++.+.|.|+|||.
T Consensus 96 ~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~-~~--~~~~~~~fDVIIvDs~-----~~~~-fy~~~~~~L~~~Gi 166 (262)
T PRK00536 96 HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK-QL--LDLDIKKYDLIICLQE-----PDIH-KIDGLKRMLKEDGV 166 (262)
T ss_pred eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee-hh--hhccCCcCCEEEEcCC-----CChH-HHHHHHHhcCCCcE
Confidence 3333455678888887731 1 1 11211 11 1112478999998743 2334 88999999999999
Q ss_pred EEEec
Q 009719 230 LVISG 234 (527)
Q Consensus 230 lviS~ 234 (527)
++.-.
T Consensus 167 ~v~Qs 171 (262)
T PRK00536 167 FISVA 171 (262)
T ss_pred EEECC
Confidence 99944
No 328
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=62.83 E-value=23 Score=39.13 Aligned_cols=92 Identities=24% Similarity=0.358 Sum_probs=54.8
Q ss_pred ccccccCCeeEEeeccCcChHHH----HHHHHHcCCCcEE-eeccccCCC---CCCCcccEEE----ecCcccccc----
Q 009719 147 GGSMLSENILTLSFAPRDSHKAQ----IQFALERGIPAFV-AMLGTRRLP---FPAFSFDIVH----CSRCLIPFT---- 210 (527)
Q Consensus 147 ga~Ll~r~V~~msiAp~D~seaq----vq~A~eRg~pa~~-~v~dae~LP---FpD~SFDlV~----cs~~l~hw~---- 210 (527)
|+-|-+.|++. | .|..+.. .+.+.+-|+...+ +..|...+| |+. +||-|. ||-.-+-+.
T Consensus 260 AalMkn~G~I~---A-nD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~-~fDRVLLDAPCSGtgvi~K~~~v 334 (460)
T KOG1122|consen 260 AALMKNTGVIF---A-NDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPG-SFDRVLLDAPCSGTGVISKDQSV 334 (460)
T ss_pred HHHHcCCceEE---e-cccchHHHHHHHHHHHHhCCCceEEEccCcccccccccCc-ccceeeecCCCCCCccccccccc
Confidence 44566777752 2 2433333 3344455776544 456666665 665 999997 665111111
Q ss_pred -------------cChHHHHHHHhhcccCCcEEEEecCCCCCCCch
Q 009719 211 -------------AYNATYLIEVDRLLRPGGYLVISGPPVQWPKQD 243 (527)
Q Consensus 211 -------------d~~~~aL~Ei~RVLRPGG~lviS~pp~~~~~~~ 243 (527)
.-+.++|.-..-.+||||+||.|+-.+.-..++
T Consensus 335 kt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~~ENE 380 (460)
T KOG1122|consen 335 KTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITVEENE 380 (460)
T ss_pred ccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecchhhhH
Confidence 112236666777899999999999877655444
No 329
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=62.56 E-value=15 Score=36.89 Aligned_cols=63 Identities=19% Similarity=0.198 Sum_probs=40.7
Q ss_pred cChHHHHHHHHHc----CC-CcEEeeccccCCCCC-CCcccEEEecCcccccccChHHHHHHHhhcccCCcEEEEec
Q 009719 164 DSHKAQIQFALER----GI-PAFVAMLGTRRLPFP-AFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISG 234 (527)
Q Consensus 164 D~seaqvq~A~eR----g~-pa~~~v~dae~LPFp-D~SFDlV~cs~~l~hw~d~~~~aL~Ei~RVLRPGG~lviS~ 234 (527)
+..++..++|+++ |. .+.+.++|. ..=++ .+-||.|+++-+.-..++ . +.+-|||||++++-.
T Consensus 101 Er~~~L~~~A~~~L~~lg~~nV~v~~gDG-~~G~~~~aPyD~I~Vtaaa~~vP~----~---Ll~QL~~gGrlv~Pv 169 (209)
T COG2518 101 ERIEELAEQARRNLETLGYENVTVRHGDG-SKGWPEEAPYDRIIVTAAAPEVPE----A---LLDQLKPGGRLVIPV 169 (209)
T ss_pred EEcHHHHHHHHHHHHHcCCCceEEEECCc-ccCCCCCCCcCEEEEeeccCCCCH----H---HHHhcccCCEEEEEE
Confidence 4456677777654 55 345556663 23343 378999998877655443 2 345799999999843
No 330
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=61.39 E-value=5.3 Score=44.33 Aligned_cols=106 Identities=25% Similarity=0.311 Sum_probs=53.8
Q ss_pred eEeecCCCccchhhhc----cCCCeeEEEecCCCCCCchhHhhhc-cccc--cc-cccCCCCCCCCCccchhh----hcC
Q 009719 376 NIMDMNAFFGGFAAAL----TSDPVWVMNVVPARKSSTLSVIYDR-GLIG--VY-HDWCEPFSTYPRTYDLIH----VSG 443 (527)
Q Consensus 376 nvmDm~ag~GgFaAaL----~~~~VwvMnvvp~~~~ntl~vi~eR-GLiG--~~-hdwce~fstYPrtyDLiH----a~~ 443 (527)
.||||.|+-||=..+| .+....|-|=+...--..|.--++| |+-- +. .|=...-..+|..||.|- |++
T Consensus 116 ~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvDaPCSG 195 (470)
T PRK11933 116 RVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLDAPCSG 195 (470)
T ss_pred EEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEcCCCCC
Confidence 6999999999955444 3344322221111111344444555 4411 11 121111123567899988 665
Q ss_pred ccccccCCCCCCC-------CCc-c-cccceeecccccCCcEEEEeC
Q 009719 444 IESLIKNPGSNKN-------SCS-L-VDLMVEMDRMLRPEGTVVVRD 481 (527)
Q Consensus 444 ~fs~~~~~~~~~~-------rC~-~-~~illEmDRILRP~G~~iird 481 (527)
.-..-++|..-.. +|. + ..||-..-+.|||||.+|.+-
T Consensus 196 ~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYST 242 (470)
T PRK11933 196 EGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYST 242 (470)
T ss_pred CcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEC
Confidence 4332221111000 000 0 256777788999999999984
No 331
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=60.65 E-value=18 Score=39.13 Aligned_cols=42 Identities=24% Similarity=0.298 Sum_probs=34.6
Q ss_pred CCCCcccEEEecCcccccccChH--HHHHHHhhcccCCcEEEEec
Q 009719 192 FPAFSFDIVHCSRCLIPFTAYNA--TYLIEVDRLLRPGGYLVISG 234 (527)
Q Consensus 192 FpD~SFDlV~cs~~l~hw~d~~~--~aL~Ei~RVLRPGG~lviS~ 234 (527)
.++++||.++-+... .|.++.. ..+.+|.|+++|||++++.+
T Consensus 291 ~~~~s~~~~vL~D~~-Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rs 334 (380)
T PF11899_consen 291 LPPGSFDRFVLSDHM-DWMDPEQLNEEWQELARTARPGARVLWRS 334 (380)
T ss_pred CCCCCeeEEEecchh-hhCCHHHHHHHHHHHHHHhCCCCEEEEee
Confidence 568999999988764 7776653 48999999999999999954
No 332
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=60.14 E-value=9.4 Score=36.25 Aligned_cols=43 Identities=23% Similarity=0.399 Sum_probs=30.0
Q ss_pred CCCcccEEEecCcccccccChHHHHHHHhhcccCCcEEEEecCC
Q 009719 193 PAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPP 236 (527)
Q Consensus 193 pD~SFDlV~cs~~l~hw~d~~~~aL~Ei~RVLRPGG~lviS~pp 236 (527)
..+.||+|+++.|+.. .+.-..++.=+.+.|+|+|.++++.+.
T Consensus 116 ~~~~~D~IlasDv~Y~-~~~~~~L~~tl~~ll~~~~~vl~~~~~ 158 (173)
T PF10294_consen 116 EPHSFDVILASDVLYD-EELFEPLVRTLKRLLKPNGKVLLAYKR 158 (173)
T ss_dssp S-SSBSEEEEES--S--GGGHHHHHHHHHHHBTT-TTEEEEEE-
T ss_pred ccccCCEEEEecccch-HHHHHHHHHHHHHHhCCCCEEEEEeCE
Confidence 3468999999999744 444445888899999999998888763
No 333
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=59.93 E-value=15 Score=39.40 Aligned_cols=70 Identities=24% Similarity=0.330 Sum_probs=47.4
Q ss_pred CCcccEEEecCcccccccChHHHHHHHhhcccCCcEEEEecCCCCCCCc----------hhHHHHHHHHHHhcceEEeee
Q 009719 194 AFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQ----------DKEWADLQAVARALCYELIAV 263 (527)
Q Consensus 194 D~SFDlV~cs~~l~hw~d~~~~aL~Ei~RVLRPGG~lviS~pp~~~~~~----------~~~w~~i~~l~~~mcW~~~~~ 263 (527)
.++||+|+..+ ++.-..+--.+|.-|..+|||||+|+=-+|-.|-..+ +...+.+..+++.+-|+...+
T Consensus 257 ~~~~d~VvTcf-FIDTa~NileYi~tI~~iLk~GGvWiNlGPLlYHF~d~~g~~~~~siEls~edl~~v~~~~GF~~~ke 335 (369)
T KOG2798|consen 257 AGSYDVVVTCF-FIDTAHNILEYIDTIYKILKPGGVWINLGPLLYHFEDTHGVENEMSIELSLEDLKRVASHRGFEVEKE 335 (369)
T ss_pred CCccceEEEEE-EeechHHHHHHHHHHHHhccCCcEEEeccceeeeccCCCCCcccccccccHHHHHHHHHhcCcEEEEe
Confidence 35799998543 2232222223899999999999999987774321111 114677888999999998877
Q ss_pred e
Q 009719 264 D 264 (527)
Q Consensus 264 ~ 264 (527)
.
T Consensus 336 ~ 336 (369)
T KOG2798|consen 336 R 336 (369)
T ss_pred e
Confidence 6
No 334
>PF07629 DUF1590: Protein of unknown function (DUF1590); InterPro: IPR011481 These hypothetical proteins in Rhodopirellula baltica have a conserved C-terminal region.
Probab=58.63 E-value=5.3 Score=28.16 Aligned_cols=19 Identities=26% Similarity=0.621 Sum_probs=17.0
Q ss_pred cCCCCCCCCCccccCCCCC
Q 009719 111 RHCPLPDQTPLCLIPPPRG 129 (527)
Q Consensus 111 RhCp~~~~~~~Clvp~P~g 129 (527)
-||||+|-.++-+.|.|+.
T Consensus 5 a~~pppeislna~fptppa 23 (32)
T PF07629_consen 5 ADCPPPEISLNARFPTPPA 23 (32)
T ss_pred CCCCCCcceeccccCCChh
Confidence 5999999999999999974
No 335
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=58.16 E-value=25 Score=37.62 Aligned_cols=89 Identities=15% Similarity=0.112 Sum_probs=53.7
Q ss_pred hhccccccccCCeeEEeeccCcChHHHHHHHHHc----CC-CcEEeeccccCC-CCCCCcccEEEecCcccccccChHHH
Q 009719 143 VASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRRL-PFPAFSFDIVHCSRCLIPFTAYNATY 216 (527)
Q Consensus 143 vgsfga~Ll~r~V~~msiAp~D~seaqvq~A~eR----g~-pa~~~v~dae~L-PFpD~SFDlV~cs~~l~hw~d~~~~a 216 (527)
+|.++..|..++..+..+ |.++..++.|++. ++ .+.+..+|++.. +-..+.||+|++.= +...-...+
T Consensus 244 ~G~~~l~la~~~~~v~~v---E~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DP---Pr~G~~~~~ 317 (374)
T TIGR02085 244 VGGFGLHCAGPDTQLTGI---EIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNP---PRRGIGKEL 317 (374)
T ss_pred ccHHHHHHhhcCCeEEEE---ECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECC---CCCCCcHHH
Confidence 566666676665433333 6677777777643 44 355677776543 22235699999762 222222225
Q ss_pred HHHHhhcccCCcEEEEecCCCC
Q 009719 217 LIEVDRLLRPGGYLVISGPPVQ 238 (527)
Q Consensus 217 L~Ei~RVLRPGG~lviS~pp~~ 238 (527)
+..+. -++|++.+++|-.|..
T Consensus 318 l~~l~-~~~p~~ivyvsc~p~T 338 (374)
T TIGR02085 318 CDYLS-QMAPKFILYSSCNAQT 338 (374)
T ss_pred HHHHH-hcCCCeEEEEEeCHHH
Confidence 55554 4899999999876544
No 336
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=57.57 E-value=8.1 Score=39.43 Aligned_cols=42 Identities=21% Similarity=0.304 Sum_probs=32.4
Q ss_pred CCCCcccEEEecCcccccccChHHHHHHHhhcccCCcEEEEec
Q 009719 192 FPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISG 234 (527)
Q Consensus 192 FpD~SFDlV~cs~~l~hw~d~~~~aL~Ei~RVLRPGG~lviS~ 234 (527)
.+|++||.|.-.--..++.+-.. +...+.|.|||+|.|-+..
T Consensus 165 L~d~~FDGI~yDTy~e~yEdl~~-~hqh~~rLLkP~gv~SyfN 206 (271)
T KOG1709|consen 165 LPDKHFDGIYYDTYSELYEDLRH-FHQHVVRLLKPEGVFSYFN 206 (271)
T ss_pred ccccCcceeEeechhhHHHHHHH-HHHHHhhhcCCCceEEEec
Confidence 68999999986544356555444 8889999999999998753
No 337
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=56.78 E-value=21 Score=35.09 Aligned_cols=88 Identities=15% Similarity=0.124 Sum_probs=47.7
Q ss_pred hhccccccccCCeeEEeeccCcChHHHHHHHHHc----CCC-cEEeeccccC-CCCCCCcccEEEecCcccccccC-hHH
Q 009719 143 VASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIP-AFVAMLGTRR-LPFPAFSFDIVHCSRCLIPFTAY-NAT 215 (527)
Q Consensus 143 vgsfga~Ll~r~V~~msiAp~D~seaqvq~A~eR----g~p-a~~~v~dae~-LPFpD~SFDlV~cs~~l~hw~d~-~~~ 215 (527)
+|++|-.++.++.. .+...|.++..++.|++. ++. +.+..+|... |+..+++||+|++.= ++... ...
T Consensus 64 sG~l~l~~lsr~a~--~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DP---Py~~g~~~~ 138 (199)
T PRK10909 64 SGALGLEALSRYAA--GATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDP---PFRKGLLEE 138 (199)
T ss_pred ccHHHHHHHHcCCC--EEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECC---CCCCChHHH
Confidence 45555544555432 222224455556555432 432 4556666543 444456799999773 33222 122
Q ss_pred HHHHHh--hcccCCcEEEEecC
Q 009719 216 YLIEVD--RLLRPGGYLVISGP 235 (527)
Q Consensus 216 aL~Ei~--RVLRPGG~lviS~p 235 (527)
++.-+. .+|+|+|.++++.+
T Consensus 139 ~l~~l~~~~~l~~~~iv~ve~~ 160 (199)
T PRK10909 139 TINLLEDNGWLADEALIYVESE 160 (199)
T ss_pred HHHHHHHCCCcCCCcEEEEEec
Confidence 333333 34899999999876
No 338
>PRK04148 hypothetical protein; Provisional
Probab=56.71 E-value=8.3 Score=36.05 Aligned_cols=92 Identities=14% Similarity=0.164 Sum_probs=57.4
Q ss_pred eeEeecCCCccc-hhhhccCCCeeEEEecCCCCC-CchhHhhhccccccccccCCCCCCCCCccchhhhcCccccccCCC
Q 009719 375 RNIMDMNAFFGG-FAAALTSDPVWVMNVVPARKS-STLSVIYDRGLIGVYHDWCEPFSTYPRTYDLIHVSGIESLIKNPG 452 (527)
Q Consensus 375 RnvmDm~ag~Gg-FaAaL~~~~VwvMnvvp~~~~-ntl~vi~eRGLiG~~hdwce~fstYPrtyDLiHa~~~fs~~~~~~ 452 (527)
+.++|+|||+|. +|..|.+...-||-+ |-. +-++-+-++|+-.+.-|+=+ .+ ++.|.
T Consensus 18 ~kileIG~GfG~~vA~~L~~~G~~ViaI---Di~~~aV~~a~~~~~~~v~dDlf~-------------p~--~~~y~--- 76 (134)
T PRK04148 18 KKIVELGIGFYFKVAKKLKESGFDVIVI---DINEKAVEKAKKLGLNAFVDDLFN-------------PN--LEIYK--- 76 (134)
T ss_pred CEEEEEEecCCHHHHHHHHHCCCEEEEE---ECCHHHHHHHHHhCCeEEECcCCC-------------CC--HHHHh---
Confidence 569999999996 999998887655433 322 44566666765444433221 11 12222
Q ss_pred CCCCCCcccccceeecccccCCcEEEEeCCHHHHHHHHHHHhcCCceeEEecCC
Q 009719 453 SNKNSCSLVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRIANTVRWTAAVHDKE 506 (527)
Q Consensus 453 ~~~~rC~~~~illEmDRILRP~G~~iird~~~~~~~i~~i~~~l~W~~~~~~~e 506 (527)
+ -+++.+ ||=..+.+..+.++++++.=++.+.-..
T Consensus 77 ---~----a~liys------------irpp~el~~~~~~la~~~~~~~~i~~l~ 111 (134)
T PRK04148 77 ---N----AKLIYS------------IRPPRDLQPFILELAKKINVPLIIKPLS 111 (134)
T ss_pred ---c----CCEEEE------------eCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 1 234443 3446788889999999999988876443
No 339
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=55.79 E-value=15 Score=38.11 Aligned_cols=127 Identities=13% Similarity=0.160 Sum_probs=67.4
Q ss_pred eeEeecCCCccchhhhccCCCeeEEEecCCCCC-CchhHh----hhccccccccccCCCCCC----CCCccchhhhcCcc
Q 009719 375 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVI----YDRGLIGVYHDWCEPFST----YPRTYDLIHVSGIE 445 (527)
Q Consensus 375 RnvmDm~ag~GgFaAaL~~~~VwvMnvvp~~~~-ntl~vi----~eRGLiG~~hdwce~fst----YPrtyDLiHa~~~f 445 (527)
..|+|++||.|.|+..|.+..- .|+-+|.. ..+..+ -+.|+ .-.+=.+..+.. -...||+|-.+
T Consensus 175 ~~VLDl~cG~G~~sl~la~~~~---~V~gvD~s~~av~~A~~n~~~~~l-~~v~~~~~D~~~~~~~~~~~~D~Vv~d--- 247 (315)
T PRK03522 175 RSMWDLFCGVGGFGLHCATPGM---QLTGIEISAEAIACAKQSAAELGL-TNVQFQALDSTQFATAQGEVPDLVLVN--- 247 (315)
T ss_pred CEEEEccCCCCHHHHHHHhcCC---EEEEEeCCHHHHHHHHHHHHHcCC-CceEEEEcCHHHHHHhcCCCCeEEEEC---
Confidence 5799999999999999987542 34444432 333322 22343 111111111111 12468877654
Q ss_pred ccccCCCCCCCCCcccccceeecccccCCcEEEEeCCHHHHH-HHHHHHhcCCceeE---EecCCCCCCCCceEEEEEe
Q 009719 446 SLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSPEVID-KVSRIANTVRWTAA---VHDKEPGSNGREKILVATK 520 (527)
Q Consensus 446 s~~~~~~~~~~rC~~~~illEmDRILRP~G~~iird~~~~~~-~i~~i~~~l~W~~~---~~~~e~~~~~~ekiLi~~K 520 (527)
| .|-.+...++++=.-++|++.++++-+...+. .++.+ . -|++. ..|.=+.+..=|-|.+-+|
T Consensus 248 -----P----Pr~G~~~~~~~~l~~~~~~~ivyvsc~p~t~~rd~~~l-~--~y~~~~~~~~DmFP~T~HvE~v~~l~r 314 (315)
T PRK03522 248 -----P----PRRGIGKELCDYLSQMAPRFILYSSCNAQTMAKDLAHL-P--GYRIERVQLFDMFPHTAHYEVLTLLVR 314 (315)
T ss_pred -----C----CCCCccHHHHHHHHHcCCCeEEEEECCcccchhHHhhc-c--CcEEEEEEEeccCCCCCeEEEEEEEEc
Confidence 1 12223333333323368999999997766543 34444 3 46654 3455555555566666554
No 340
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=55.66 E-value=11 Score=34.49 Aligned_cols=38 Identities=11% Similarity=0.144 Sum_probs=27.1
Q ss_pred HHHHHHHHHhhhccCC----CCeeeEeecCCCccchhhhccC
Q 009719 356 RRVAYYKNTLNVKLGT----PAIRNIMDMNAFFGGFAAALTS 393 (527)
Q Consensus 356 ~~v~~Y~~~l~~~i~~----~~iRnvmDm~ag~GgFaAaL~~ 393 (527)
+.|..+.+.+...+.. .....|.|+|||-|=.+-+|..
T Consensus 4 ~Ei~~~~~~i~~~~~~~~~~~~~~~vvD~GsG~GyLs~~La~ 45 (141)
T PF13679_consen 4 HEIERMAELIDSLCDSVGESKRCITVVDLGSGKGYLSRALAH 45 (141)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCCEEEEeCCChhHHHHHHHH
Confidence 4456666655554444 6799999999999977766655
No 341
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=53.28 E-value=13 Score=37.87 Aligned_cols=38 Identities=26% Similarity=0.315 Sum_probs=31.1
Q ss_pred CCCCcccEEEecCcccccccChHHHHHHHhhcccCCcEEEEe
Q 009719 192 FPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVIS 233 (527)
Q Consensus 192 FpD~SFDlV~cs~~l~hw~d~~~~aL~Ei~RVLRPGG~lviS 233 (527)
.+.++||+|+. -||.+.-...+.+.-|.||+||.+++-
T Consensus 145 ~~~~tfDfaFv----DadK~nY~~y~e~~l~Llr~GGvi~~D 182 (237)
T KOG1663|consen 145 GESGTFDFAFV----DADKDNYSNYYERLLRLLRVGGVIVVD 182 (237)
T ss_pred CCCCceeEEEE----ccchHHHHHHHHHHHhhcccccEEEEe
Confidence 47899999984 466655446899999999999999984
No 342
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=52.71 E-value=15 Score=39.95 Aligned_cols=20 Identities=35% Similarity=0.551 Sum_probs=17.5
Q ss_pred CCCCCcccEEEecCccccccc
Q 009719 191 PFPAFSFDIVHCSRCLIPFTA 211 (527)
Q Consensus 191 PFpD~SFDlV~cs~~l~hw~d 211 (527)
=||++|.+++|++.++ ||-.
T Consensus 157 LfP~~Slh~~~Ss~sl-HWLS 176 (386)
T PLN02668 157 LFPARSIDVFHSAFSL-HWLS 176 (386)
T ss_pred ccCCCceEEEEeeccc-eecc
Confidence 3999999999999997 8854
No 343
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=52.57 E-value=22 Score=34.61 Aligned_cols=55 Identities=29% Similarity=0.353 Sum_probs=37.6
Q ss_pred HHcCCC-cEEeeccccCCCCCCCcccEEEecCcccccccChHHHHHHHhhcccCCcEEEEec
Q 009719 174 LERGIP-AFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISG 234 (527)
Q Consensus 174 ~eRg~p-a~~~v~dae~LPFpD~SFDlV~cs~~l~hw~d~~~~aL~Ei~RVLRPGG~lviS~ 234 (527)
.+-|++ +.+....++. +-...+||+|++. ++..+ ..++.-+.+.|+|||++++--
T Consensus 93 ~~L~L~nv~v~~~R~E~-~~~~~~fd~v~aR-Av~~l----~~l~~~~~~~l~~~G~~l~~K 148 (184)
T PF02527_consen 93 RELGLSNVEVINGRAEE-PEYRESFDVVTAR-AVAPL----DKLLELARPLLKPGGRLLAYK 148 (184)
T ss_dssp HHHT-SSEEEEES-HHH-TTTTT-EEEEEEE-SSSSH----HHHHHHHGGGEEEEEEEEEEE
T ss_pred HHhCCCCEEEEEeeecc-cccCCCccEEEee-hhcCH----HHHHHHHHHhcCCCCEEEEEc
Confidence 344776 4555566777 7778999999975 44343 347888889999999998753
No 344
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=50.80 E-value=81 Score=30.17 Aligned_cols=85 Identities=15% Similarity=0.277 Sum_probs=52.0
Q ss_pred HHHHHHcCCCcEEeeccccCC----CCCCCcccEEEecCcccccc-----cCh---------HHHHHHHhhcccCCcEEE
Q 009719 170 IQFALERGIPAFVAMLGTRRL----PFPAFSFDIVHCSRCLIPFT-----AYN---------ATYLIEVDRLLRPGGYLV 231 (527)
Q Consensus 170 vq~A~eRg~pa~~~v~dae~L----PFpD~SFDlV~cs~~l~hw~-----d~~---------~~aL~Ei~RVLRPGG~lv 231 (527)
++.-++.|+.+.+.+ |+.+| ....+.||.|+-. +-|.. ... ..+|+-..++|+++|.+.
T Consensus 46 l~~L~~~g~~V~~~V-Dat~l~~~~~~~~~~FDrIiFN--FPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~Ih 122 (166)
T PF10354_consen 46 LEELRELGVTVLHGV-DATKLHKHFRLKNQRFDRIIFN--FPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIH 122 (166)
T ss_pred HHHHhhcCCccccCC-CCCcccccccccCCcCCEEEEe--CCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEE
Confidence 333345576666554 44444 3468999999954 34443 011 127888899999999999
Q ss_pred EecCCCCCCCchhHHHHHHHHHHhcceEEe
Q 009719 232 ISGPPVQWPKQDKEWADLQAVARALCYELI 261 (527)
Q Consensus 232 iS~pp~~~~~~~~~w~~i~~l~~~mcW~~~ 261 (527)
++--... ++..|+ |+++|+.-...+.
T Consensus 123 VTl~~~~---py~~W~-i~~lA~~~gl~l~ 148 (166)
T PF10354_consen 123 VTLKDGQ---PYDSWN-IEELAAEAGLVLV 148 (166)
T ss_pred EEeCCCC---CCcccc-HHHHHHhcCCEEE
Confidence 9764211 134464 6678776544443
No 345
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=50.50 E-value=13 Score=37.07 Aligned_cols=26 Identities=12% Similarity=0.164 Sum_probs=20.9
Q ss_pred CeeeEeecCCCccchhhhccCCCeeE
Q 009719 373 AIRNIMDMNAFFGGFAAALTSDPVWV 398 (527)
Q Consensus 373 ~iRnvmDm~ag~GgFaAaL~~~~Vwv 398 (527)
.-.+|+|+|||.|.+.++|.+..-.|
T Consensus 29 ~~~~VLEiG~G~G~lt~~L~~~~~~v 54 (253)
T TIGR00755 29 EGDVVLEIGPGLGALTEPLLKRAKKV 54 (253)
T ss_pred CcCEEEEeCCCCCHHHHHHHHhCCcE
Confidence 45789999999999999997654333
No 346
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=49.56 E-value=16 Score=34.09 Aligned_cols=21 Identities=10% Similarity=0.257 Sum_probs=18.6
Q ss_pred eeEeecCCCccchhhhccCCC
Q 009719 375 RNIMDMNAFFGGFAAALTSDP 395 (527)
Q Consensus 375 RnvmDm~ag~GgFaAaL~~~~ 395 (527)
.+|+|+|||.|.++..|.++.
T Consensus 15 ~~vLEiG~G~G~lt~~l~~~~ 35 (169)
T smart00650 15 DTVLEIGPGKGALTEELLERA 35 (169)
T ss_pred CEEEEECCCccHHHHHHHhcC
Confidence 479999999999999998764
No 347
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=48.26 E-value=35 Score=35.27 Aligned_cols=90 Identities=19% Similarity=0.181 Sum_probs=49.3
Q ss_pred eeccCcChHHHHHHHHHc----CCC-cEEeeccccCCCCCCCcccEEEecC-----ccc--------c------cccChH
Q 009719 159 SFAPRDSHKAQIQFALER----GIP-AFVAMLGTRRLPFPAFSFDIVHCSR-----CLI--------P------FTAYNA 214 (527)
Q Consensus 159 siAp~D~seaqvq~A~eR----g~p-a~~~v~dae~LPFpD~SFDlV~cs~-----~l~--------h------w~d~~~ 214 (527)
.+...|.+..-++.|++. |+. ..+...|- --+.. +.||+|+|+= -.. | +...++
T Consensus 136 ~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dl-f~~~~-~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dG 213 (280)
T COG2890 136 EVIAVDISPDALALARENAERNGLVRVLVVQSDL-FEPLR-GKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDG 213 (280)
T ss_pred eEEEEECCHHHHHHHHHHHHHcCCccEEEEeeec-ccccC-CceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccH
Confidence 444457778888888654 431 12222221 11232 3899999871 100 1 001111
Q ss_pred -----HHHHHHhhcccCCcEEEEecCCCCCCCchhHHHHHHHHHHhcc
Q 009719 215 -----TYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALC 257 (527)
Q Consensus 215 -----~aL~Ei~RVLRPGG~lviS~pp~~~~~~~~~w~~i~~l~~~mc 257 (527)
..+.++.+.|+|||.+++-..... -+.++++.....
T Consensus 214 l~~~~~i~~~a~~~l~~~g~l~le~g~~q-------~~~v~~~~~~~~ 254 (280)
T COG2890 214 LEVYRRILGEAPDILKPGGVLILEIGLTQ-------GEAVKALFEDTG 254 (280)
T ss_pred HHHHHHHHHhhHHHcCCCcEEEEEECCCc-------HHHHHHHHHhcC
Confidence 278889999999999998543111 234556666655
No 348
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=48.21 E-value=12 Score=38.19 Aligned_cols=21 Identities=14% Similarity=0.398 Sum_probs=18.5
Q ss_pred eeEeecCCCccchhhhccCCC
Q 009719 375 RNIMDMNAFFGGFAAALTSDP 395 (527)
Q Consensus 375 RnvmDm~ag~GgFaAaL~~~~ 395 (527)
.+|+|+|||.|.++.+|.++.
T Consensus 44 ~~VLEiG~G~G~lt~~L~~~~ 64 (272)
T PRK00274 44 DNVLEIGPGLGALTEPLLERA 64 (272)
T ss_pred CeEEEeCCCccHHHHHHHHhC
Confidence 579999999999999997764
No 349
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=48.02 E-value=18 Score=38.70 Aligned_cols=126 Identities=13% Similarity=0.171 Sum_probs=60.7
Q ss_pred eeEeecCCCccchhhhccCCCeeEEEecCCCCC-CchhHhhh----ccc--ccccc-ccCCCCCCCCCccchhhhcCccc
Q 009719 375 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYD----RGL--IGVYH-DWCEPFSTYPRTYDLIHVSGIES 446 (527)
Q Consensus 375 RnvmDm~ag~GgFaAaL~~~~VwvMnvvp~~~~-ntl~vi~e----RGL--iG~~h-dwce~fstYPrtyDLiHa~~~fs 446 (527)
++|+|++||+|.|+.+|.++.-. |+-++.. ..+..+-+ -|+ +=.++ |.-+..+.--..||+|-.+
T Consensus 235 ~~vLDL~cG~G~~~l~la~~~~~---v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~D---- 307 (374)
T TIGR02085 235 TQMWDLFCGVGGFGLHCAGPDTQ---LTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVN---- 307 (374)
T ss_pred CEEEEccCCccHHHHHHhhcCCe---EEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEEC----
Confidence 58999999999999988766432 3333322 22322221 122 00010 1000000000236766553
Q ss_pred cccCCCCCCCCCcccccceeecccccCCcEEEEeCCHHHHHH-HHHHHhcCCceeEE---ecCCCCCCCCceEEEE
Q 009719 447 LIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSPEVIDK-VSRIANTVRWTAAV---HDKEPGSNGREKILVA 518 (527)
Q Consensus 447 ~~~~~~~~~~rC~~~~illEmDRILRP~G~~iird~~~~~~~-i~~i~~~l~W~~~~---~~~e~~~~~~ekiLi~ 518 (527)
|-.. ++. ..++-.+. -++|++.++++-++..+.+ ++.+ . -|++.. .|-=+.+..=|-|.+-
T Consensus 308 ----PPr~--G~~-~~~l~~l~-~~~p~~ivyvsc~p~TlaRDl~~L-~--gy~l~~~~~~DmFPqT~HvE~v~ll 372 (374)
T TIGR02085 308 ----PPRR--GIG-KELCDYLS-QMAPKFILYSSCNAQTMAKDIAEL-S--GYQIERVQLFDMFPHTSHYEVLTLL 372 (374)
T ss_pred ----CCCC--CCc-HHHHHHHH-hcCCCeEEEEEeCHHHHHHHHHHh-c--CceEEEEEEeccCCCCCcEEEEEEE
Confidence 2221 121 12211121 2799999999988776544 5555 2 476543 3443444444555443
No 350
>PLN02823 spermine synthase
Probab=47.48 E-value=33 Score=36.58 Aligned_cols=98 Identities=16% Similarity=0.233 Sum_probs=52.2
Q ss_pred cCCCCeeeEeecCCCccchhhhccCC-CeeEEEecCCCCC------------------CchhHhhhccccccccccCCCC
Q 009719 369 LGTPAIRNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS------------------STLSVIYDRGLIGVYHDWCEPF 429 (527)
Q Consensus 369 i~~~~iRnvmDm~ag~GgFaAaL~~~-~VwvMnvvp~~~~------------------ntl~vi~eRGLiG~~hdwce~f 429 (527)
+....-++||-+|+|.|+.+..+.+. ++-.+-+|=.|.. ..+.++.+-|+-- +
T Consensus 99 ~~~~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~--------L 170 (336)
T PLN02823 99 LHHPNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAE--------L 170 (336)
T ss_pred hhCCCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHH--------H
Confidence 34446789999999999998866553 4432323322221 1122222222210 0
Q ss_pred CCCCCccchhhhcCccccccCCCCCCCCCc-c--cccce-eecccccCCcEEEEe
Q 009719 430 STYPRTYDLIHVSGIESLIKNPGSNKNSCS-L--VDLMV-EMDRMLRPEGTVVVR 480 (527)
Q Consensus 430 stYPrtyDLiHa~~~fs~~~~~~~~~~rC~-~--~~ill-EmDRILRP~G~~iir 480 (527)
..-+..||+|=.+ ++..+. .+ -|. + ...+- .+-|.|+|||.+++.
T Consensus 171 ~~~~~~yDvIi~D-~~dp~~----~~-~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 171 EKRDEKFDVIIGD-LADPVE----GG-PCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred hhCCCCccEEEec-CCCccc----cC-cchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 1124689998876 333221 11 121 0 12333 578999999999876
No 351
>PRK13699 putative methylase; Provisional
Probab=47.45 E-value=18 Score=36.08 Aligned_cols=20 Identities=25% Similarity=0.230 Sum_probs=17.2
Q ss_pred cccceeecccccCCcEEEEe
Q 009719 461 VDLMVEMDRMLRPEGTVVVR 480 (527)
Q Consensus 461 ~~illEmDRILRP~G~~iir 480 (527)
..++-|+-|||+|||.+++-
T Consensus 52 ~~~l~E~~RVLKpgg~l~if 71 (227)
T PRK13699 52 QPACNEMYRVLKKDALMVSF 71 (227)
T ss_pred HHHHHHHHHHcCCCCEEEEE
Confidence 46788999999999999863
No 352
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=46.86 E-value=14 Score=36.44 Aligned_cols=45 Identities=24% Similarity=0.292 Sum_probs=25.3
Q ss_pred ccchhhHHHHHHHHHHHHHhhhccCCCCeeeEeecCCCccchhhhccC--CCeeEE
Q 009719 346 VFEADSRRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTS--DPVWVM 399 (527)
Q Consensus 346 ~f~~d~~~W~~~v~~Y~~~l~~~i~~~~iRnvmDm~ag~GgFaAaL~~--~~VwvM 399 (527)
.|.......+.|+.+ .+..+ .+|+||-||.|.|+-.+.. +.-.|.
T Consensus 83 yfs~rl~~Er~Ri~~-------~v~~~--e~VlD~faGIG~f~l~~ak~~~~~~V~ 129 (200)
T PF02475_consen 83 YFSPRLSTERRRIAN-------LVKPG--EVVLDMFAGIGPFSLPIAKHGKAKRVY 129 (200)
T ss_dssp ---GGGHHHHHHHHT-------C--TT---EEEETT-TTTTTHHHHHHHT-SSEEE
T ss_pred EEccccHHHHHHHHh-------cCCcc--eEEEEccCCccHHHHHHhhhcCccEEE
Confidence 355555556665543 23344 5899999999999877655 554444
No 353
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=46.51 E-value=19 Score=36.33 Aligned_cols=23 Identities=9% Similarity=0.147 Sum_probs=19.8
Q ss_pred eeeEeecCCCccchhhhccCCCe
Q 009719 374 IRNIMDMNAFFGGFAAALTSDPV 396 (527)
Q Consensus 374 iRnvmDm~ag~GgFaAaL~~~~V 396 (527)
-.+|+|+|||.|.+...|.....
T Consensus 30 ~~~VLEIG~G~G~lt~~L~~~~~ 52 (258)
T PRK14896 30 GDPVLEIGPGKGALTDELAKRAK 52 (258)
T ss_pred cCeEEEEeCccCHHHHHHHHhCC
Confidence 37899999999999999987643
No 354
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=46.09 E-value=9 Score=38.79 Aligned_cols=23 Identities=22% Similarity=0.296 Sum_probs=18.5
Q ss_pred ccceeecccccCCcEEEEeCCHH
Q 009719 462 DLMVEMDRMLRPEGTVVVRDSPE 484 (527)
Q Consensus 462 ~illEmDRILRP~G~~iird~~~ 484 (527)
.+|.|.-=+||+||.++.-.++.
T Consensus 164 ~l~~eyay~l~~gg~~ytitDv~ 186 (249)
T KOG3115|consen 164 TLLSEYAYVLREGGILYTITDVK 186 (249)
T ss_pred hHHHHHHhhhhcCceEEEEeeHH
Confidence 57888889999999998765544
No 355
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=45.90 E-value=5.1 Score=41.70 Aligned_cols=45 Identities=16% Similarity=0.360 Sum_probs=35.3
Q ss_pred CCccchhhhcCccccccCCCCCCCCCcccccceeecccccCCcEEEEeCCHH
Q 009719 433 PRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSPE 484 (527)
Q Consensus 433 PrtyDLiHa~~~fs~~~~~~~~~~rC~~~~illEmDRILRP~G~~iird~~~ 484 (527)
+..||+|-|-.+|.... .=.-..++-.+-+.|+|||++++-....
T Consensus 221 ~~~fD~I~cRNvliyF~-------~~~~~~vl~~l~~~L~pgG~L~lG~sEs 265 (287)
T PRK10611 221 PGPFDAIFCRNVMIYFD-------KTTQERILRRFVPLLKPDGLLFAGHSEN 265 (287)
T ss_pred CCCcceeeHhhHHhcCC-------HHHHHHHHHHHHHHhCCCcEEEEeCccc
Confidence 37899999999988663 1123678999999999999998876543
No 356
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.61 E-value=3.9 Score=39.69 Aligned_cols=41 Identities=20% Similarity=0.255 Sum_probs=32.6
Q ss_pred CCccchhhhcCccccccCCCCCCCCCcccccceeecccccCCcEEEEe
Q 009719 433 PRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 480 (527)
Q Consensus 433 PrtyDLiHa~~~fs~~~~~~~~~~rC~~~~illEmDRILRP~G~~iir 480 (527)
|++-|+|-|.+++.+.. . -.-..-+=|--|+|||||++-|.
T Consensus 45 dns~d~iyaeHvlEHlt----~---~Eg~~alkechr~Lrp~G~LriA 85 (185)
T COG4627 45 DNSVDAIYAEHVLEHLT----Y---DEGTSALKECHRFLRPGGKLRIA 85 (185)
T ss_pred CcchHHHHHHHHHHHHh----H---HHHHHHHHHHHHHhCcCcEEEEE
Confidence 69999999999987764 1 11246788999999999999886
No 357
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=43.54 E-value=9.9 Score=38.27 Aligned_cols=142 Identities=15% Similarity=0.210 Sum_probs=78.9
Q ss_pred HHHHHHhhhccCCCCeeeEeecCCCccch----hhhccCCC-eeEEEecCCCCCCchhHhhhccccc---cc--cccCCC
Q 009719 359 AYYKNTLNVKLGTPAIRNIMDMNAFFGGF----AAALTSDP-VWVMNVVPARKSSTLSVIYDRGLIG---VY--HDWCEP 428 (527)
Q Consensus 359 ~~Y~~~l~~~i~~~~iRnvmDm~ag~GgF----aAaL~~~~-VwvMnvvp~~~~ntl~vi~eRGLiG---~~--hdwce~ 428 (527)
..|..+|. ....-++||.+|.+.|== |.+|-++. +.+.-+-|......-+.+-+=|+-. .+ .|+-+.
T Consensus 48 g~~L~~L~---~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~ 124 (219)
T COG4122 48 GALLRLLA---RLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDV 124 (219)
T ss_pred HHHHHHHH---HhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHH
Confidence 45666543 445789999999987732 22233222 3333333322222333444445411 22 377777
Q ss_pred CC-CCCCccchhhhcCccccccCCCCCCCCCcccccceeecccccCCcEEEEeC---------C-----HHHHHHHHHHH
Q 009719 429 FS-TYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD---------S-----PEVIDKVSRIA 493 (527)
Q Consensus 429 fs-tYPrtyDLiHa~~~fs~~~~~~~~~~rC~~~~illEmDRILRP~G~~iird---------~-----~~~~~~i~~i~ 493 (527)
++ ...-+||||=.+. ++=+...++=+.=+.|||||.+|+.+ . .....+++.+.
T Consensus 125 l~~~~~~~fDliFIDa------------dK~~yp~~le~~~~lLr~GGliv~DNvl~~G~v~~~~~~~~~~~~~~~~~~~ 192 (219)
T COG4122 125 LSRLLDGSFDLVFIDA------------DKADYPEYLERALPLLRPGGLIVADNVLFGGRVADPSIRDARTQVRGVRDFN 192 (219)
T ss_pred HHhccCCCccEEEEeC------------ChhhCHHHHHHHHHHhCCCcEEEEeecccCCccCCccchhHHHHHHHHHHHH
Confidence 77 3668899875542 12233456666667799999999984 1 13444455555
Q ss_pred hcCCc----eeEEecCCCCCCCCceEEEEEec
Q 009719 494 NTVRW----TAAVHDKEPGSNGREKILVATKS 521 (527)
Q Consensus 494 ~~l~W----~~~~~~~e~~~~~~ekiLi~~K~ 521 (527)
.-+.+ +.... | ..+.++++.|.
T Consensus 193 ~~~~~~~~~~t~~l-----P-~gDGl~v~~k~ 218 (219)
T COG4122 193 DYLLEDPRYDTVLL-----P-LGDGLLLSRKR 218 (219)
T ss_pred HHHhhCcCceeEEE-----e-cCCceEEEeec
Confidence 44444 44443 2 23789999885
No 358
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=42.86 E-value=6.6 Score=40.44 Aligned_cols=142 Identities=16% Similarity=0.223 Sum_probs=75.0
Q ss_pred CCccccCCCccc--cccccCccccchhhHHHHHHHHHHHHHhhhccCCCCeeeEeecCCCccchhhhccC--CC--eeEE
Q 009719 326 WPQRLTKAPSRA--LVMKNGYDVFEADSRRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTS--DP--VWVM 399 (527)
Q Consensus 326 wP~Rl~~~p~rl--~~~g~~~~~f~~d~~~W~~~v~~Y~~~l~~~i~~~~iRnvmDm~ag~GgFaAaL~~--~~--VwvM 399 (527)
|-.++..-|.+- .-.+...+.|-.| ++|-.+ ++-.++. .....--.++.+|||.|.-.--|+. .+ +-||
T Consensus 27 ~~~~y~~~~~k~wD~fy~~~~~rFfkd-R~wL~~--Efpel~~--~~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~ 101 (264)
T KOG2361|consen 27 EVVKYEREASKYWDTFYKIHENRFFKD-RNWLLR--EFPELLP--VDEKSAETILEVGCGVGNTVFPLLKTSPNNRLKVY 101 (264)
T ss_pred hhhhhhcchhhhhhhhhhhccccccch-hHHHHH--hhHHhhC--ccccChhhheeeccCCCcccchhhhcCCCCCeEEE
Confidence 334444444442 2345566666666 445432 2222111 1111111899999999976544422 12 4444
Q ss_pred EecCCCCCCchhHhhhccc------cccccccCCCC---CCCCCccchhhhcCccccccCCCCCCCCCcccccceeeccc
Q 009719 400 NVVPARKSSTLSVIYDRGL------IGVYHDWCEPF---STYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRM 470 (527)
Q Consensus 400 nvvp~~~~ntl~vi~eRGL------iG~~hdwce~f---stYPrtyDLiHa~~~fs~~~~~~~~~~rC~~~~illEmDRI 470 (527)
..= -+|+-+.++-++-- -...+|-+.+= +--+-+.|+|-+-.+||... .=.+...+-..-|+
T Consensus 102 acD--fsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi~-------pek~~~a~~nl~~l 172 (264)
T KOG2361|consen 102 ACD--FSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAIH-------PEKMQSVIKNLRTL 172 (264)
T ss_pred EcC--CChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEEEEeccC-------hHHHHHHHHHHHHH
Confidence 221 01222222222111 12223333221 11347899999988888763 33466788889999
Q ss_pred ccCCcEEEEeC
Q 009719 471 LRPEGTVVVRD 481 (527)
Q Consensus 471 LRP~G~~iird 481 (527)
|+|||.+++||
T Consensus 173 lKPGG~llfrD 183 (264)
T KOG2361|consen 173 LKPGGSLLFRD 183 (264)
T ss_pred hCCCcEEEEee
Confidence 99999999997
No 359
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=42.84 E-value=11 Score=38.96 Aligned_cols=154 Identities=14% Similarity=0.129 Sum_probs=82.4
Q ss_pred ccccccccCccccchhhHHHHHHHHHHHHHhhhccCCCCeeeEeecCCCccchhhhccCCCe-eEEEecCCCCCCchhH-
Q 009719 335 SRALVMKNGYDVFEADSRRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTSDPV-WVMNVVPARKSSTLSV- 412 (527)
Q Consensus 335 ~rl~~~g~~~~~f~~d~~~W~~~v~~Y~~~l~~~i~~~~iRnvmDm~ag~GgFaAaL~~~~V-wvMnvvp~~~~ntl~v- 412 (527)
|.|.+.|+.-- =..++.-|.....+- + .++..+=-+|||.=.|+|=+|+.-.++.- .|..|- . .||-|++
T Consensus 102 PTiEIdGIrMh-rt~~tdP~~Dt~~Kv-~----~V~~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvE-k-dp~VLeLa 173 (287)
T COG2521 102 PTIEIDGIRMH-RTKGTDPLEDTLAKV-E----LVKVKRGERVLDTCTGLGYTAIEALERGAIHVITVE-K-DPNVLELA 173 (287)
T ss_pred CeEEEccEEEe-cccCcCcHHHHHhhh-h----eeccccCCEeeeeccCccHHHHHHHHcCCcEEEEEe-e-CCCeEEee
Confidence 66777776321 023445565544321 1 12233345899999999999987665553 333321 0 0111111
Q ss_pred ---hhhcccc----c-cccccCCCCCCCC-Cccch-hhhcCccccccCCCCCCCCCcccccceeecccccCCcEEEEe--
Q 009719 413 ---IYDRGLI----G-VYHDWCEPFSTYP-RTYDL-IHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR-- 480 (527)
Q Consensus 413 ---i~eRGLi----G-~~hdwce~fstYP-rtyDL-iHa~~~fs~~~~~~~~~~rC~~~~illEmDRILRP~G~~iir-- 480 (527)
=+.|||. - +..|--|...+++ -+||. ||=--=||.-. . ==-+.+--|+-|||||||-+.=-
T Consensus 174 ~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIiHDPPRfS~Ag------e-LYseefY~El~RiLkrgGrlFHYvG 246 (287)
T COG2521 174 KLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAIIHDPPRFSLAG------E-LYSEEFYRELYRILKRGGRLFHYVG 246 (287)
T ss_pred ccCCCCccccccccEEecccHHHHHhcCCccccceEeeCCCccchhh------h-HhHHHHHHHHHHHcCcCCcEEEEeC
Confidence 1334441 1 1233334455667 45885 46444444210 0 00045677999999999987542
Q ss_pred C------CHHHHHHHHHHHhcCCceeEEe
Q 009719 481 D------SPEVIDKVSRIANTVRWTAAVH 503 (527)
Q Consensus 481 d------~~~~~~~i~~i~~~l~W~~~~~ 503 (527)
. -.+....|.+-+++.-..+...
T Consensus 247 ~Pg~ryrG~d~~~gVa~RLr~vGF~~v~~ 275 (287)
T COG2521 247 NPGKRYRGLDLPKGVAERLRRVGFEVVKK 275 (287)
T ss_pred CCCcccccCChhHHHHHHHHhcCceeeee
Confidence 1 2446666777777777775444
No 360
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=42.38 E-value=39 Score=35.20 Aligned_cols=70 Identities=17% Similarity=0.161 Sum_probs=44.4
Q ss_pred cChHHHHHHHHHcC-CC--------cEEeeccccC-CCCCCCcccEEEecCcccccccC-----hHHHHHHHhhcccCCc
Q 009719 164 DSHKAQIQFALERG-IP--------AFVAMLGTRR-LPFPAFSFDIVHCSRCLIPFTAY-----NATYLIEVDRLLRPGG 228 (527)
Q Consensus 164 D~seaqvq~A~eRg-~p--------a~~~v~dae~-LPFpD~SFDlV~cs~~l~hw~d~-----~~~aL~Ei~RVLRPGG 228 (527)
++.++.++.|++.- .+ +.+...|+.+ +.=...+||+|++... -+- .. ...+++.+.|.|+|+|
T Consensus 107 EID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~t-dp~-gp~~~Lft~eFy~~~~~~L~~~G 184 (282)
T COG0421 107 EIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVDST-DPV-GPAEALFTEEFYEGCRRALKEDG 184 (282)
T ss_pred EcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEcCC-CCC-CcccccCCHHHHHHHHHhcCCCc
Confidence 44578899998752 11 2344455433 4422348999997632 221 11 2349999999999999
Q ss_pred EEEEecC
Q 009719 229 YLVISGP 235 (527)
Q Consensus 229 ~lviS~p 235 (527)
.++.-+.
T Consensus 185 i~v~q~~ 191 (282)
T COG0421 185 IFVAQAG 191 (282)
T ss_pred EEEEecC
Confidence 9998643
No 361
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=42.15 E-value=1e+02 Score=29.14 Aligned_cols=90 Identities=20% Similarity=0.223 Sum_probs=50.0
Q ss_pred cChHHHHHHHHHc----CCC--cEEeeccccCCC-CCC-CcccEEEecCcccccccC--------hHHHHHHHhhcccCC
Q 009719 164 DSHKAQIQFALER----GIP--AFVAMLGTRRLP-FPA-FSFDIVHCSRCLIPFTAY--------NATYLIEVDRLLRPG 227 (527)
Q Consensus 164 D~seaqvq~A~eR----g~p--a~~~v~dae~LP-FpD-~SFDlV~cs~~l~hw~d~--------~~~aL~Ei~RVLRPG 227 (527)
|+-++.++.+++| +.. +.+...+=+.|. |-+ +.+|+|+-++.-.+=.|. .-.+|..+.++|+||
T Consensus 6 DIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al~lL~~g 85 (140)
T PF06962_consen 6 DIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAALELLKPG 85 (140)
T ss_dssp ES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHHHHEEEE
T ss_pred ECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHHHhhccC
Confidence 5556666666554 332 444444444443 333 589999988664442221 113999999999999
Q ss_pred cEEEEecCCCCCCCch---hHHHHHHHHHHhcc
Q 009719 228 GYLVISGPPVQWPKQD---KEWADLQAVARALC 257 (527)
Q Consensus 228 G~lviS~pp~~~~~~~---~~w~~i~~l~~~mc 257 (527)
|.+++...+ ++. .+.+.+++.++.+.
T Consensus 86 G~i~iv~Y~----GH~gG~eE~~av~~~~~~L~ 114 (140)
T PF06962_consen 86 GIITIVVYP----GHPGGKEESEAVEEFLASLD 114 (140)
T ss_dssp EEEEEEE------STCHHHHHHHHHHHHHHTS-
T ss_pred CEEEEEEeC----CCCCCHHHHHHHHHHHHhCC
Confidence 999997642 333 34556666666554
No 362
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=41.85 E-value=32 Score=34.68 Aligned_cols=58 Identities=9% Similarity=0.077 Sum_probs=39.1
Q ss_pred hhccccccccCCeeEEeeccCcChHHHHHHHHHcCC---CcEEeeccccCCCCCCCcccEEEecCc
Q 009719 143 VASFGGSMLSENILTLSFAPRDSHKAQIQFALERGI---PAFVAMLGTRRLPFPAFSFDIVHCSRC 205 (527)
Q Consensus 143 vgsfga~Ll~r~V~~msiAp~D~seaqvq~A~eRg~---pa~~~v~dae~LPFpD~SFDlV~cs~~ 205 (527)
.|.++..|..++..+.. .|.++.+++.++++.. ...+..+|+..+++++ ||.|+++.-
T Consensus 40 ~G~lt~~L~~~~~~v~~---vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~~--~d~Vv~NlP 100 (258)
T PRK14896 40 KGALTDELAKRAKKVYA---IELDPRLAEFLRDDEIAAGNVEIIEGDALKVDLPE--FNKVVSNLP 100 (258)
T ss_pred cCHHHHHHHHhCCEEEE---EECCHHHHHHHHHHhccCCCEEEEEeccccCCchh--ceEEEEcCC
Confidence 45556666666543333 3667788888876531 2566778988888864 899998865
No 363
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=41.27 E-value=5.6 Score=39.08 Aligned_cols=54 Identities=17% Similarity=0.270 Sum_probs=30.3
Q ss_pred cccCCCCCCCCCccchhhhcCccccccCCCCCCCCCcccccceeecccccCCcEEEEeCCHH
Q 009719 423 HDWCEPFSTYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSPE 484 (527)
Q Consensus 423 hdwce~fstYPrtyDLiHa~~~fs~~~~~~~~~~rC~~~~illEmDRILRP~G~~iird~~~ 484 (527)
||-.+ ....+.-||+|=|-+++.-.. .=.-..++=-+-+.|+||||+++-....
T Consensus 125 ~NL~~-~~~~~~~fD~I~CRNVlIYF~-------~~~~~~vl~~l~~~L~pgG~L~lG~sE~ 178 (196)
T PF01739_consen 125 HNLLD-PDPPFGRFDLIFCRNVLIYFD-------PETQQRVLRRLHRSLKPGGYLFLGHSES 178 (196)
T ss_dssp --TT--S------EEEEEE-SSGGGS--------HHHHHHHHHHHGGGEEEEEEEEE-TT--
T ss_pred cccCC-CCcccCCccEEEecCEEEEeC-------HHHHHHHHHHHHHHcCCCCEEEEecCcc
Confidence 44444 223457899999999988664 1122467777889999999999986543
No 364
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=41.14 E-value=14 Score=38.39 Aligned_cols=124 Identities=15% Similarity=0.153 Sum_probs=71.4
Q ss_pred hccCCCCeeeEeecCCCccchhhhccCCC-eeEEEecCCCCCCchhHhhhccccccccccCC--C-----------CCCC
Q 009719 367 VKLGTPAIRNIMDMNAFFGGFAAALTSDP-VWVMNVVPARKSSTLSVIYDRGLIGVYHDWCE--P-----------FSTY 432 (527)
Q Consensus 367 ~~i~~~~iRnvmDm~ag~GgFaAaL~~~~-VwvMnvvp~~~~ntl~vi~eRGLiG~~hdwce--~-----------fstY 432 (527)
+++..+.-|.||=+|-|-||.+-.+.+.+ |=-+-+|=. |---+.+-|..++..|.++. . .-.+
T Consensus 70 ~~~ah~~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEI---D~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~ 146 (282)
T COG0421 70 PLLAHPNPKRVLIIGGGDGGTLREVLKHLPVERITMVEI---DPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDC 146 (282)
T ss_pred hhhhCCCCCeEEEECCCccHHHHHHHhcCCcceEEEEEc---CHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhC
Confidence 35566777999999999999999987766 322222211 22245667777777774443 0 1136
Q ss_pred CCccchhhhcCccccccCCCCCCCCCcccccceeecccccCCcEEEEeCC-----HHHHHHHHHHHhcCCc
Q 009719 433 PRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS-----PEVIDKVSRIANTVRW 498 (527)
Q Consensus 433 PrtyDLiHa~~~fs~~~~~~~~~~rC~~~~illEmDRILRP~G~~iird~-----~~~~~~i~~i~~~l~W 498 (527)
+.+||+|=.+. .+|..-...=--....=...|+|+|+|.++.+.. .+.+..+.+-.+++.+
T Consensus 147 ~~~fDvIi~D~-----tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~~~~~~~~~~~~~~~~~~vf~ 212 (282)
T COG0421 147 EEKFDVIIVDS-----TDPVGPAEALFTEEFYEGCRRALKEDGIFVAQAGSPFLQDEEIALAYRNVSRVFS 212 (282)
T ss_pred CCcCCEEEEcC-----CCCCCcccccCCHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHHhhcc
Confidence 77999986641 1110000000002344456899999999999921 2333444444555533
No 365
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=40.55 E-value=12 Score=39.08 Aligned_cols=93 Identities=13% Similarity=0.226 Sum_probs=55.1
Q ss_pred eeEeecCCCccchhhhccCCCeeEEEecCCCC----------CCchhHhhhccc---cccccccCCCCCCCCCccchhhh
Q 009719 375 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARK----------SSTLSVIYDRGL---IGVYHDWCEPFSTYPRTYDLIHV 441 (527)
Q Consensus 375 RnvmDm~ag~GgFaAaL~~~~VwvMnvvp~~~----------~ntl~vi~eRGL---iG~~hdwce~fstYPrtyDLiHa 441 (527)
|+|+|+|||.|-..=.|....- +|.-.|. +....-..++++ |--.|.==|.+- -.||.|=|
T Consensus 91 ~~ilDvGCGgGLLSepLArlga---~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~---~~fDaVvc 164 (282)
T KOG1270|consen 91 MKILDVGCGGGLLSEPLARLGA---QVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT---GKFDAVVC 164 (282)
T ss_pred ceEEEeccCccccchhhHhhCC---eeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc---cccceeee
Confidence 6799999998866655544442 3333333 222222344432 111111112221 22999999
Q ss_pred cCccccccCCCCCCCCCcccccceeecccccCCcEEEEeCC
Q 009719 442 SGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS 482 (527)
Q Consensus 442 ~~~fs~~~~~~~~~~rC~~~~illEmDRILRP~G~~iird~ 482 (527)
+-++.++++ ...++-=+=+.|+|+|-++|.+-
T Consensus 165 sevleHV~d---------p~~~l~~l~~~lkP~G~lfitti 196 (282)
T KOG1270|consen 165 SEVLEHVKD---------PQEFLNCLSALLKPNGRLFITTI 196 (282)
T ss_pred HHHHHHHhC---------HHHHHHHHHHHhCCCCceEeeeh
Confidence 988888762 34566667789999999999974
No 366
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=39.98 E-value=24 Score=35.92 Aligned_cols=58 Identities=5% Similarity=-0.040 Sum_probs=40.4
Q ss_pred hhccccccccCCeeEEeeccCcChHHHHHHHHHcC--CCcEEeeccccCCCCCCCcccEEEec
Q 009719 143 VASFGGSMLSENILTLSFAPRDSHKAQIQFALERG--IPAFVAMLGTRRLPFPAFSFDIVHCS 203 (527)
Q Consensus 143 vgsfga~Ll~r~V~~msiAp~D~seaqvq~A~eRg--~pa~~~v~dae~LPFpD~SFDlV~cs 203 (527)
.|.++..|+.++.. +...|.++.|++.++++. ....+.++|+..+++++-.+|.|+++
T Consensus 53 ~G~lt~~L~~~~~~---v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~vv~N 112 (272)
T PRK00274 53 LGALTEPLLERAAK---VTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDLSELQPLKVVAN 112 (272)
T ss_pred ccHHHHHHHHhCCc---EEEEECCHHHHHHHHHhhccCceEEEEChhhcCCHHHcCcceEEEe
Confidence 46666677776543 333466788998887753 24567788999999876546888877
No 367
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=39.76 E-value=59 Score=34.46 Aligned_cols=76 Identities=13% Similarity=0.061 Sum_probs=48.5
Q ss_pred eeccCcChHHHHHHHHHcCC----CcE-E--eeccc----cCCCC--CCCcccEEEec-CcccccccChH-HHHHHHhh-
Q 009719 159 SFAPRDSHKAQIQFALERGI----PAF-V--AMLGT----RRLPF--PAFSFDIVHCS-RCLIPFTAYNA-TYLIEVDR- 222 (527)
Q Consensus 159 siAp~D~seaqvq~A~eRg~----pa~-~--~v~da----e~LPF--pD~SFDlV~cs-~~l~hw~d~~~-~aL~Ei~R- 222 (527)
...|.|+|++.++.+.++-. |.. + ..++- ..||= ......++..- ..+-++...+. .+|+++.+
T Consensus 106 ~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~ 185 (319)
T TIGR03439 106 DYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLAT 185 (319)
T ss_pred eEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHh
Confidence 56777999999998876532 322 2 22331 22322 22446666644 35556655543 48999999
Q ss_pred cccCCcEEEEec
Q 009719 223 LLRPGGYLVISG 234 (527)
Q Consensus 223 VLRPGG~lviS~ 234 (527)
+|+|||.|++..
T Consensus 186 ~l~~~d~lLiG~ 197 (319)
T TIGR03439 186 ALSPSDSFLIGL 197 (319)
T ss_pred hCCCCCEEEEec
Confidence 999999999975
No 368
>PF13334 DUF4094: Domain of unknown function (DUF4094)
Probab=39.56 E-value=19 Score=31.76 Aligned_cols=19 Identities=11% Similarity=0.069 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHhhccCCC
Q 009719 23 SATFFGLVLLFFLLVFTPL 41 (527)
Q Consensus 23 ~~~~l~~~~~~~g~~~~~~ 41 (527)
.+++||+++|++|.+|++.
T Consensus 4 w~l~Lc~~SF~~G~lft~R 22 (95)
T PF13334_consen 4 WVLLLCIASFCAGMLFTNR 22 (95)
T ss_pred HHHHHHHHHHHHHHHHhcc
Confidence 3678999999999998864
No 369
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=39.37 E-value=19 Score=36.01 Aligned_cols=131 Identities=18% Similarity=0.234 Sum_probs=79.6
Q ss_pred eEeecCCCccchhhhccC-CCeeEEEecCCCCC-Cchh----Hhhhcccc----ccccccCCC-------CCCCCCccch
Q 009719 376 NIMDMNAFFGGFAAALTS-DPVWVMNVVPARKS-STLS----VIYDRGLI----GVYHDWCEP-------FSTYPRTYDL 438 (527)
Q Consensus 376 nvmDm~ag~GgFaAaL~~-~~VwvMnvvp~~~~-ntl~----vi~eRGLi----G~~hdwce~-------fstYPrtyDL 438 (527)
.||.+++|+|--|+++.. .|- +.--|+|.. +.+. -|-+-|+. .+.-|-+.+ -.-++.+||.
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~--l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~ 105 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPH--LTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDA 105 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCC--CEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcce
Confidence 899999999976655522 231 123466654 2222 24466752 222222222 2225689998
Q ss_pred hhhcCcc--ccccCCCCCCCCCcccccceeecccccCCcEEEEeC-----------------------C----HHHHHHH
Q 009719 439 IHVSGIE--SLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD-----------------------S----PEVIDKV 489 (527)
Q Consensus 439 iHa~~~f--s~~~~~~~~~~rC~~~~illEmDRILRP~G~~iird-----------------------~----~~~~~~i 489 (527)
|=|..++ +.|. ..+-++-+.-|+|+|||.+++=. + ..-++.|
T Consensus 106 i~~~N~lHI~p~~---------~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v 176 (204)
T PF06080_consen 106 IFCINMLHISPWS---------AVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRDIEDV 176 (204)
T ss_pred eeehhHHHhcCHH---------HHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccCHHHH
Confidence 8777665 3332 23678899999999999999952 1 1236678
Q ss_pred HHHHhcCCceeEEecCCCCCCCCceEEEEEe
Q 009719 490 SRIANTVRWTAAVHDKEPGSNGREKILVATK 520 (527)
Q Consensus 490 ~~i~~~l~W~~~~~~~e~~~~~~ekiLi~~K 520 (527)
.++|.+-..+.... + +-| ...++||.+|
T Consensus 177 ~~lA~~~GL~l~~~-~-~MP-ANN~~Lvfrk 204 (204)
T PF06080_consen 177 EALAAAHGLELEED-I-DMP-ANNLLLVFRK 204 (204)
T ss_pred HHHHHHCCCccCcc-c-ccC-CCCeEEEEeC
Confidence 88888877764321 1 233 2578999887
No 370
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=38.96 E-value=62 Score=36.34 Aligned_cols=73 Identities=22% Similarity=0.309 Sum_probs=45.7
Q ss_pred CcChHHHHHHHHH--cC-----CCcEE-eeccccCCCCCC-CcccEEEecCcccccccChH--HHHHHH-hhcccCCcEE
Q 009719 163 RDSHKAQIQFALE--RG-----IPAFV-AMLGTRRLPFPA-FSFDIVHCSRCLIPFTAYNA--TYLIEV-DRLLRPGGYL 230 (527)
Q Consensus 163 ~D~seaqvq~A~e--Rg-----~pa~~-~v~dae~LPFpD-~SFDlV~cs~~l~hw~d~~~--~aL~Ei-~RVLRPGG~l 230 (527)
.|.+.+|..++.. |+ -+..- .+.--+.+|-.. +-||+|+|++.++|...... ....+. .+..++||++
T Consensus 232 Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlvi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~l 311 (491)
T KOG2539|consen 232 VDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLVICAHKLHELGSKFSRLDVPESLWRKTDRSGYFL 311 (491)
T ss_pred eccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeEEeeeeeeccCCchhhhhhhHHHHHhccCCCceE
Confidence 3566666665532 22 12111 133456789864 45999999999999776542 134444 4568999999
Q ss_pred EEecC
Q 009719 231 VISGP 235 (527)
Q Consensus 231 viS~p 235 (527)
++-.+
T Consensus 312 ViIe~ 316 (491)
T KOG2539|consen 312 VIIEK 316 (491)
T ss_pred EEEec
Confidence 98654
No 371
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=37.17 E-value=32 Score=37.14 Aligned_cols=86 Identities=19% Similarity=0.249 Sum_probs=51.2
Q ss_pred hhcccccccc-CCeeEEeeccCcChHHHHHHHHH----cCCC-cEEeeccccCCCCCCCcccEEEecCcccccccChHHH
Q 009719 143 VASFGGSMLS-ENILTLSFAPRDSHKAQIQFALE----RGIP-AFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATY 216 (527)
Q Consensus 143 vgsfga~Ll~-r~V~~msiAp~D~seaqvq~A~e----Rg~p-a~~~v~dae~LPFpD~SFDlV~cs~~l~hw~d~~~~a 216 (527)
+|.+|-.+.. .++. .+...|.++..++.+++ .++. ..+..+|+..+....+.||+|+.. ++... ..+
T Consensus 68 sG~~~l~~a~~~~~~--~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lD----P~Gs~-~~~ 140 (382)
T PRK04338 68 SGIRGIRYALETGVE--KVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDID----PFGSP-APF 140 (382)
T ss_pred ccHHHHHHHHHCCCC--EEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEEC----CCCCc-HHH
Confidence 5666655532 3421 22233556666666654 2444 336667776543214679999965 23222 337
Q ss_pred HHHHhhcccCCcEEEEecC
Q 009719 217 LIEVDRLLRPGGYLVISGP 235 (527)
Q Consensus 217 L~Ei~RVLRPGG~lviS~p 235 (527)
|....+.++|||.+.+|..
T Consensus 141 l~~al~~~~~~gilyvSAt 159 (382)
T PRK04338 141 LDSAIRSVKRGGLLCVTAT 159 (382)
T ss_pred HHHHHHHhcCCCEEEEEec
Confidence 7776788999999999865
No 372
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=36.52 E-value=44 Score=28.99 Aligned_cols=73 Identities=22% Similarity=0.291 Sum_probs=45.6
Q ss_pred CCeeEEeeccCcChHHHHHHHHHcCCCcEEeeccc---cCC-C-CCCCcccEEEecCcccccccChHHHHHHHhhcccCC
Q 009719 153 ENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGT---RRL-P-FPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPG 227 (527)
Q Consensus 153 r~V~~msiAp~D~seaqvq~A~eRg~pa~~~v~da---e~L-P-FpD~SFDlV~cs~~l~hw~d~~~~aL~Ei~RVLRPG 227 (527)
.|..++.+ +.++..++++++.|....+...+. +++ . ++.+-+|+|+=.-. ... .+.+...+|+||
T Consensus 13 ~G~~vi~~---~~~~~k~~~~~~~Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g------~~~-~~~~~~~~l~~~ 82 (130)
T PF00107_consen 13 MGAKVIAT---DRSEEKLELAKELGADHVIDYSDDDFVEQIRELTGGRGVDVVIDCVG------SGD-TLQEAIKLLRPG 82 (130)
T ss_dssp TTSEEEEE---ESSHHHHHHHHHTTESEEEETTTSSHHHHHHHHTTTSSEEEEEESSS------SHH-HHHHHHHHEEEE
T ss_pred cCCEEEEE---ECCHHHHHHHHhhcccccccccccccccccccccccccceEEEEecC------cHH-HHHHHHHHhccC
Confidence 34443444 456778889988884433322111 111 2 33468999983221 233 899999999999
Q ss_pred cEEEEecC
Q 009719 228 GYLVISGP 235 (527)
Q Consensus 228 G~lviS~p 235 (527)
|.+++.+-
T Consensus 83 G~~v~vg~ 90 (130)
T PF00107_consen 83 GRIVVVGV 90 (130)
T ss_dssp EEEEEESS
T ss_pred CEEEEEEc
Confidence 99999775
No 373
>PLN02672 methionine S-methyltransferase
Probab=35.96 E-value=1.4e+02 Score=36.97 Aligned_cols=48 Identities=10% Similarity=0.154 Sum_probs=30.0
Q ss_pred HHHHHHhhcccCCcEEEEecCCCCCCCchhHHHHHH-HHHHhcceEEeeeecceEEEeCCCc
Q 009719 215 TYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQ-AVARALCYELIAVDGNTVIWKKPVG 275 (527)
Q Consensus 215 ~aL~Ei~RVLRPGG~lviS~pp~~~~~~~~~w~~i~-~l~~~mcW~~~~~~~~v~iwrKp~~ 275 (527)
.++.+..++|||||.+++-.-.. .=+.+. ++.++.-| ..+.+||+...
T Consensus 259 ~i~~~a~~~L~pgG~l~lEiG~~-------q~~~v~~~l~~~~gf------~~~~~~~~~~~ 307 (1082)
T PLN02672 259 RAVEEGISVIKPMGIMIFNMGGR-------PGQAVCERLFERRGF------RITKLWQTKIN 307 (1082)
T ss_pred HHHHHHHHhccCCCEEEEEECcc-------HHHHHHHHHHHHCCC------CeeEEeeehhh
Confidence 37888899999999999864311 113455 35554333 23667777754
No 374
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=35.93 E-value=65 Score=32.22 Aligned_cols=57 Identities=9% Similarity=0.022 Sum_probs=37.5
Q ss_pred hhccccccccCCeeEEeeccCcChHHHHHHHHHcC---CCcEEeeccccCCCCCCCccc---EEEecC
Q 009719 143 VASFGGSMLSENILTLSFAPRDSHKAQIQFALERG---IPAFVAMLGTRRLPFPAFSFD---IVHCSR 204 (527)
Q Consensus 143 vgsfga~Ll~r~V~~msiAp~D~seaqvq~A~eRg---~pa~~~v~dae~LPFpD~SFD---lV~cs~ 204 (527)
.|.++..|+.++-.++.+ |.++.+++.+.++. ....+..+|+..+|++ +|| +|+++.
T Consensus 40 ~G~lt~~L~~~~~~v~~i---E~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~--~~d~~~~vvsNl 102 (253)
T TIGR00755 40 LGALTEPLLKRAKKVTAI---EIDPRLAEILRKLLSLYERLEVIEGDALKVDLP--DFPKQLKVVSNL 102 (253)
T ss_pred CCHHHHHHHHhCCcEEEE---ECCHHHHHHHHHHhCcCCcEEEEECchhcCChh--HcCCcceEEEcC
Confidence 566677777765433333 55678888887652 2355677899888887 566 777654
No 375
>PRK00536 speE spermidine synthase; Provisional
Probab=35.59 E-value=56 Score=33.76 Aligned_cols=94 Identities=14% Similarity=0.113 Sum_probs=57.4
Q ss_pred hccCCCCeeeEeecCCCccchhhhccCCCeeEEEecCCCCC--------CchhHhhhccc----cccccccCCCCCCCCC
Q 009719 367 VKLGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS--------STLSVIYDRGL----IGVYHDWCEPFSTYPR 434 (527)
Q Consensus 367 ~~i~~~~iRnvmDm~ag~GgFaAaL~~~~VwvMnvvp~~~~--------ntl~vi~eRGL----iG~~hdwce~fstYPr 434 (527)
+++..+.-|+||=+|.|-||-+-=+++.|- +|+-++-- .-|+.+-+ ++ +-++- |- -.....
T Consensus 66 pl~~h~~pk~VLIiGGGDGg~~REvLkh~~---~v~mVeID~~Vv~~~k~~lP~~~~-~~~DpRv~l~~-~~--~~~~~~ 138 (262)
T PRK00536 66 GGCTKKELKEVLIVDGFDLELAHQLFKYDT---HVDFVQADEKILDSFISFFPHFHE-VKNNKNFTHAK-QL--LDLDIK 138 (262)
T ss_pred HHhhCCCCCeEEEEcCCchHHHHHHHCcCC---eeEEEECCHHHHHHHHHHCHHHHH-hhcCCCEEEee-hh--hhccCC
Confidence 356677899999999999998887777762 33333221 11222111 21 00000 11 112247
Q ss_pred ccchhhhcCccccccCCCCCCCCCcccccceeecccccCCcEEEEeC
Q 009719 435 TYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 481 (527)
Q Consensus 435 tyDLiHa~~~fs~~~~~~~~~~rC~~~~illEmDRILRP~G~~iird 481 (527)
+||+|=.+.+|+. ...=.+-|+|+|||.++.+.
T Consensus 139 ~fDVIIvDs~~~~--------------~fy~~~~~~L~~~Gi~v~Qs 171 (262)
T PRK00536 139 KYDLIICLQEPDI--------------HKIDGLKRMLKEDGVFISVA 171 (262)
T ss_pred cCCEEEEcCCCCh--------------HHHHHHHHhcCCCcEEEECC
Confidence 8999998877652 23345799999999999985
No 376
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=35.54 E-value=30 Score=34.97 Aligned_cols=71 Identities=15% Similarity=0.172 Sum_probs=42.7
Q ss_pred cChHHHHHHHHHcC---------CCcEEeeccccC-CCCCCC-cccEEEecCcccccccC----hHHHHHHHhhcccCCc
Q 009719 164 DSHKAQIQFALERG---------IPAFVAMLGTRR-LPFPAF-SFDIVHCSRCLIPFTAY----NATYLIEVDRLLRPGG 228 (527)
Q Consensus 164 D~seaqvq~A~eRg---------~pa~~~v~dae~-LPFpD~-SFDlV~cs~~l~hw~d~----~~~aL~Ei~RVLRPGG 228 (527)
|+.++.++.|++-- -...+..+|+.. |--..+ .||+|+....- +.... ...++..+.|.|+|||
T Consensus 107 EiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi~D~~d-p~~~~~~l~t~ef~~~~~~~L~~~G 185 (246)
T PF01564_consen 107 EIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVIIVDLTD-PDGPAPNLFTREFYQLCKRRLKPDG 185 (246)
T ss_dssp ES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEEEESSS-TTSCGGGGSSHHHHHHHHHHEEEEE
T ss_pred ecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEEEeCCC-CCCCcccccCHHHHHHHHhhcCCCc
Confidence 55677888887531 123455566432 222233 99999975432 22111 1238999999999999
Q ss_pred EEEEecC
Q 009719 229 YLVISGP 235 (527)
Q Consensus 229 ~lviS~p 235 (527)
.+++-..
T Consensus 186 v~v~~~~ 192 (246)
T PF01564_consen 186 VLVLQAG 192 (246)
T ss_dssp EEEEEEE
T ss_pred EEEEEcc
Confidence 9998653
No 377
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=35.24 E-value=65 Score=33.25 Aligned_cols=85 Identities=14% Similarity=0.168 Sum_probs=45.1
Q ss_pred hhccccccc-cCCeeEEeeccCcChHHHHHHHHHcCCCcEEee-ccccCCCCCCCcccEEEecCcccccccChHHHHHHH
Q 009719 143 VASFGGSML-SENILTLSFAPRDSHKAQIQFALERGIPAFVAM-LGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEV 220 (527)
Q Consensus 143 vgsfga~Ll-~r~V~~msiAp~D~seaqvq~A~eRg~pa~~~v-~dae~LPFpD~SFDlV~cs~~l~hw~d~~~~aL~Ei 220 (527)
+|.++..++ ..|+.++.++..+.++..+++|++.|....... .+..... ..+.||+|+-.-. .. ..+.+.
T Consensus 184 vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v~~~~~~~~~~~-~~~~~d~vid~~g------~~-~~~~~~ 255 (355)
T cd08230 184 IGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATYVNSSKTPVAEVK-LVGEFDLIIEATG------VP-PLAFEA 255 (355)
T ss_pred HHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEecCCccchhhhh-hcCCCCEEEECcC------CH-HHHHHH
Confidence 444444332 235444444444445666777776664321100 0000000 1245888874422 12 278899
Q ss_pred hhcccCCcEEEEecC
Q 009719 221 DRLLRPGGYLVISGP 235 (527)
Q Consensus 221 ~RVLRPGG~lviS~p 235 (527)
.++|||||++++.+-
T Consensus 256 ~~~l~~~G~~v~~G~ 270 (355)
T cd08230 256 LPALAPNGVVILFGV 270 (355)
T ss_pred HHHccCCcEEEEEec
Confidence 999999999988664
No 378
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=35.14 E-value=58 Score=33.26 Aligned_cols=75 Identities=21% Similarity=0.356 Sum_probs=45.9
Q ss_pred eeEEeeccCcChHHHHHHHHHcCCCcEEeeccccCCCC--C--CCcccEEEecCcccccccChHHHHHHHhhcccCCcEE
Q 009719 155 ILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPF--P--AFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYL 230 (527)
Q Consensus 155 V~~msiAp~D~seaqvq~A~eRg~pa~~~v~dae~LPF--p--D~SFDlV~cs~~l~hw~d~~~~aL~Ei~RVLRPGG~l 230 (527)
|-+++++|.. .+..+..|.+|. ...-..+|+ +.|. . =...|+|.+.-. ++ +....++.-...-||+||++
T Consensus 101 VYaVEfs~r~-~rdL~~la~~R~-NIiPIl~DA-r~P~~Y~~lv~~VDvI~~DVa-Qp--~Qa~I~~~Na~~fLk~gG~~ 174 (229)
T PF01269_consen 101 VYAVEFSPRS-MRDLLNLAKKRP-NIIPILEDA-RHPEKYRMLVEMVDVIFQDVA-QP--DQARIAALNARHFLKPGGHL 174 (229)
T ss_dssp EEEEESSHHH-HHHHHHHHHHST-TEEEEES-T-TSGGGGTTTS--EEEEEEE-S-ST--THHHHHHHHHHHHEEEEEEE
T ss_pred EEEEEecchh-HHHHHHHhccCC-ceeeeeccC-CChHHhhcccccccEEEecCC-Ch--HHHHHHHHHHHhhccCCcEE
Confidence 4578888743 456778888874 111123454 2332 1 347899997633 22 33346888888999999999
Q ss_pred EEecC
Q 009719 231 VISGP 235 (527)
Q Consensus 231 viS~p 235 (527)
+++-.
T Consensus 175 ~i~iK 179 (229)
T PF01269_consen 175 IISIK 179 (229)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99764
No 379
>PF14881 Tubulin_3: Tubulin domain
Probab=34.61 E-value=31 Score=33.54 Aligned_cols=34 Identities=26% Similarity=0.632 Sum_probs=26.5
Q ss_pred CCeeeEeecCCCccchhhhcc--------CCCe-eEEEecCCC
Q 009719 372 PAIRNIMDMNAFFGGFAAALT--------SDPV-WVMNVVPAR 405 (527)
Q Consensus 372 ~~iRnvmDm~ag~GgFaAaL~--------~~~V-wvMnvvp~~ 405 (527)
..+..+.|+-.|+||||+.++ +++| |+.++-+..
T Consensus 75 QGfQ~~~d~d~gwgGfas~~Le~L~DEy~k~~i~~~~~~~~~~ 117 (180)
T PF14881_consen 75 QGFQVLTDVDDGWGGFASSLLEHLRDEYPKKPIIWVWGLRDPS 117 (180)
T ss_pred cceEEEecCCCchHhHHHHHHHHHHHHcCCCceEEeecCCCcc
Confidence 359999999999999999984 4564 887665443
No 380
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=34.57 E-value=47 Score=36.32 Aligned_cols=60 Identities=23% Similarity=0.297 Sum_probs=41.1
Q ss_pred cCCCCC-CCcccEEEecCcccccccChH--HHHHHHhhcccCCcEEEEecCCCCCCCchhHHHHHHHH
Q 009719 188 RRLPFP-AFSFDIVHCSRCLIPFTAYNA--TYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAV 252 (527)
Q Consensus 188 e~LPFp-D~SFDlV~cs~~l~hw~d~~~--~aL~Ei~RVLRPGG~lviS~pp~~~~~~~~~w~~i~~l 252 (527)
.+||+| ..++++|+.+.-|.|-..... ..+.-..-+|.|||.|||..+ +.-.+|+.|...
T Consensus 176 dRl~lp~ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivEr-----Gtp~Gf~~I~rA 238 (484)
T COG5459 176 DRLSLPAADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVER-----GTPAGFERILRA 238 (484)
T ss_pred hccCCCccceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeC-----CCchhHHHHHHH
Confidence 367775 567888887776666543321 267778889999999999886 233456766543
No 381
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=34.39 E-value=75 Score=33.15 Aligned_cols=71 Identities=15% Similarity=0.218 Sum_probs=38.9
Q ss_pred cChHHHHHHHHH--c-----CCCcEEeeccccCCCCCCCcccEEEecCccccccc-ChHHHHHHHhhcccCCcEEEEecC
Q 009719 164 DSHKAQIQFALE--R-----GIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTA-YNATYLIEVDRLLRPGGYLVISGP 235 (527)
Q Consensus 164 D~seaqvq~A~e--R-----g~pa~~~v~dae~LPFpD~SFDlV~cs~~l~hw~d-~~~~aL~Ei~RVLRPGG~lviS~p 235 (527)
|..++.++.|++ + +....+..+|....+..-..||+|+-+. ++-... +....|..+.+.++||..+++...
T Consensus 153 D~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAa-lVg~~~e~K~~Il~~l~~~m~~ga~l~~Rsa 231 (276)
T PF03059_consen 153 DIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAA-LVGMDAEPKEEILEHLAKHMAPGARLVVRSA 231 (276)
T ss_dssp ESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-T-T-S----SHHHHHHHHHHHS-TTSEEEEEE-
T ss_pred eCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhh-hcccccchHHHHHHHHHhhCCCCcEEEEecc
Confidence 556666666643 1 2234566677777777778999998553 222222 223499999999999999999643
No 382
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=34.29 E-value=46 Score=33.94 Aligned_cols=94 Identities=16% Similarity=0.274 Sum_probs=65.4
Q ss_pred eEeecCCCccchhhhcc-----CCCeeEEEecCCCCCCchhHhhhcc-ccccccccCCCCCCCCCccchh--hhcCcccc
Q 009719 376 NIMDMNAFFGGFAAALT-----SDPVWVMNVVPARKSSTLSVIYDRG-LIGVYHDWCEPFSTYPRTYDLI--HVSGIESL 447 (527)
Q Consensus 376 nvmDm~ag~GgFaAaL~-----~~~VwvMnvvp~~~~ntl~vi~eRG-LiG~~hdwce~fstYPrtyDLi--Ha~~~fs~ 447 (527)
.||-.||..|.....+. +-.|..+-..|....+-+.++-.|= +|.++.|=+ +|-.|-++ ..+-+|..
T Consensus 76 kVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr-----~P~~Y~~lv~~VDvI~~D 150 (229)
T PF01269_consen 76 KVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDAR-----HPEKYRMLVEMVDVIFQD 150 (229)
T ss_dssp EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TT-----SGGGGTTTS--EEEEEEE
T ss_pred EEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeeccCC-----ChHHhhcccccccEEEec
Confidence 69999999999888773 3357777887777777777777776 788887743 55555433 33445554
Q ss_pred ccCCCCCCCCCcccccceeecccccCCcEEEEe
Q 009719 448 IKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 480 (527)
Q Consensus 448 ~~~~~~~~~rC~~~~illEmDRILRP~G~~iir 480 (527)
.. +.=....+++-++.-|++||+++|.
T Consensus 151 Va------Qp~Qa~I~~~Na~~fLk~gG~~~i~ 177 (229)
T PF01269_consen 151 VA------QPDQARIAALNARHFLKPGGHLIIS 177 (229)
T ss_dssp -S------STTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CC------ChHHHHHHHHHHHhhccCCcEEEEE
Confidence 43 2223456778888999999999986
No 383
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=33.92 E-value=25 Score=36.52 Aligned_cols=44 Identities=9% Similarity=0.344 Sum_probs=35.0
Q ss_pred ccccceeecccccCCcEEEEe--------CC-------HH-HHHHHHHHHhcCCceeEEe
Q 009719 460 LVDLMVEMDRMLRPEGTVVVR--------DS-------PE-VIDKVSRIANTVRWTAAVH 503 (527)
Q Consensus 460 ~~~illEmDRILRP~G~~iir--------d~-------~~-~~~~i~~i~~~l~W~~~~~ 503 (527)
|.++|-.|-++|+|||+||== +. .+ .+++|+.+++++-|+....
T Consensus 181 i~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~~~~~~~~sveLs~eEi~~l~~~~GF~~~~~ 240 (270)
T PF07942_consen 181 IIEYIETIEHLLKPGGYWINFGPLLYHFEPMSIPNEMSVELSLEEIKELIEKLGFEIEKE 240 (270)
T ss_pred HHHHHHHHHHHhccCCEEEecCCccccCCCCCCCCCcccCCCHHHHHHHHHHCCCEEEEE
Confidence 457888899999999987743 32 33 4899999999999998764
No 384
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=33.14 E-value=76 Score=31.75 Aligned_cols=36 Identities=19% Similarity=0.366 Sum_probs=26.6
Q ss_pred CCCcccEEEecCcccccccChHHHHHHHhhcccCCcEEEEecC
Q 009719 193 PAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 235 (527)
Q Consensus 193 pD~SFDlV~cs~~l~hw~d~~~~aL~Ei~RVLRPGG~lviS~p 235 (527)
+.+.+|+|+..... . ..+.++.|.|++||.++..+.
T Consensus 229 ~~~~~D~vid~~g~------~-~~~~~~~~~l~~~G~~v~~g~ 264 (338)
T cd08254 229 LGGGFDVIFDFVGT------Q-PTFEDAQKAVKPGGRIVVVGL 264 (338)
T ss_pred cCCCceEEEECCCC------H-HHHHHHHHHhhcCCEEEEECC
Confidence 45678988743221 2 378999999999999998653
No 385
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=32.26 E-value=34 Score=33.65 Aligned_cols=120 Identities=10% Similarity=0.055 Sum_probs=57.3
Q ss_pred cchhhHHHHHHHHHHHHHhhhccCCCCeeeEeecCCCccchhhh-ccCCCeeEEEecCCCCC-CchhHhhh----ccc--
Q 009719 347 FEADSRRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAA-LTSDPVWVMNVVPARKS-STLSVIYD----RGL-- 418 (527)
Q Consensus 347 f~~d~~~W~~~v~~Y~~~l~~~i~~~~iRnvmDm~ag~GgFaAa-L~~~~VwvMnvvp~~~~-ntl~vi~e----RGL-- 418 (527)
+...++.-++.+-++.... . .+ .+|+|.+||+|.|+.+ |......|..| +.. ..+..+.+ -|+
T Consensus 33 ~Rp~~d~v~e~l~~~l~~~---~-~~--~~vLDl~~GsG~l~l~~lsr~a~~V~~v---E~~~~a~~~a~~Nl~~~~~~~ 103 (199)
T PRK10909 33 LRPTTDRVRETLFNWLAPV---I-VD--ARCLDCFAGSGALGLEALSRYAAGATLL---EMDRAVAQQLIKNLATLKAGN 103 (199)
T ss_pred cCcCCHHHHHHHHHHHhhh---c-CC--CEEEEcCCCccHHHHHHHHcCCCEEEEE---ECCHHHHHHHHHHHHHhCCCc
Confidence 4566666666665544311 1 12 3799999999999974 44433344333 222 22221111 121
Q ss_pred ccc-ccccCCCCCCCCCccchhhhcCccccccCCCCCCCCCcccccceeecccccCCcEEEEeCCH
Q 009719 419 IGV-YHDWCEPFSTYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP 483 (527)
Q Consensus 419 iG~-~hdwce~fstYPrtyDLiHa~~~fs~~~~~~~~~~rC~~~~illEmDRILRP~G~~iird~~ 483 (527)
+-+ ..|..+.+......||+|=++-=|- .+-...+-.+|.+ -.+|.|+|.+++.-..
T Consensus 104 v~~~~~D~~~~l~~~~~~fDlV~~DPPy~-------~g~~~~~l~~l~~-~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 104 ARVVNTNALSFLAQPGTPHNVVFVDPPFR-------KGLLEETINLLED-NGWLADEALIYVESEV 161 (199)
T ss_pred EEEEEchHHHHHhhcCCCceEEEECCCCC-------CChHHHHHHHHHH-CCCcCCCcEEEEEecC
Confidence 111 1222222221124588876653321 1111112233333 3568999999998543
No 386
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=32.08 E-value=46 Score=33.98 Aligned_cols=64 Identities=14% Similarity=0.143 Sum_probs=38.1
Q ss_pred hHHHHHHHHH----cCCC--cEEeeccc-cCCCC------CCCcccEEEecCcccccccChHHHHHHHhhcccCCcEEEE
Q 009719 166 HKAQIQFALE----RGIP--AFVAMLGT-RRLPF------PAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVI 232 (527)
Q Consensus 166 seaqvq~A~e----Rg~p--a~~~v~da-e~LPF------pD~SFDlV~cs~~l~hw~d~~~~aL~Ei~RVLRPGG~lvi 232 (527)
.+...++|++ .|+. +.+.++++ +-||- .+++||+|....- ...-..++..+.+.|||||.+++
T Consensus 113 ~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~iFiDad----K~~Y~~y~~~~l~ll~~GGviv~ 188 (247)
T PLN02589 113 NRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFDFIFVDAD----KDNYINYHKRLIDLVKVGGVIGY 188 (247)
T ss_pred CHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcccEEEecCC----HHHhHHHHHHHHHhcCCCeEEEE
Confidence 3444555543 3543 34555554 33442 1368999996632 22212377788899999999887
Q ss_pred e
Q 009719 233 S 233 (527)
Q Consensus 233 S 233 (527)
-
T Consensus 189 D 189 (247)
T PLN02589 189 D 189 (247)
T ss_pred c
Confidence 3
No 387
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=31.79 E-value=3.8e+02 Score=27.75 Aligned_cols=135 Identities=15% Similarity=0.203 Sum_probs=58.3
Q ss_pred cCCeeEEeeccCcChHHHHH----HHHHcCCCcEEeeccc-cCCCCC-CCcccEEEecCcccccccCh-HHHHHHHhhcc
Q 009719 152 SENILTLSFAPRDSHKAQIQ----FALERGIPAFVAMLGT-RRLPFP-AFSFDIVHCSRCLIPFTAYN-ATYLIEVDRLL 224 (527)
Q Consensus 152 ~r~V~~msiAp~D~seaqvq----~A~eRg~pa~~~v~da-e~LPFp-D~SFDlV~cs~~l~hw~d~~-~~aL~Ei~RVL 224 (527)
.+.|++++| .+..++ +|.+.|+++.....|. ..||=. -+.||++++. -+|.-.+ ..++.--...|
T Consensus 67 ~~~I~VvDi-----DeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TD---PPyT~~G~~LFlsRgi~~L 138 (243)
T PF01861_consen 67 PKRITVVDI-----DERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFTD---PPYTPEGLKLFLSRGIEAL 138 (243)
T ss_dssp -SEEEEE-S------HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEEE------SSHHHHHHHHHHHHHTB
T ss_pred CCeEEEEEc-----CHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEEeC---CCCCHHHHHHHHHHHHHHh
Confidence 456777755 455554 5566788876666664 344432 5899999976 3444332 23566666677
Q ss_pred cCCc---EEEEecCCCCCCCchhHHHHHHHHHHhcceEEeeeecceEEEeCCCccccc---cccCCCCCCCCCCCCCCCc
Q 009719 225 RPGG---YLVISGPPVQWPKQDKEWADLQAVARALCYELIAVDGNTVIWKKPVGESCL---SNQNEFGLELCDESDDPNY 298 (527)
Q Consensus 225 RPGG---~lviS~pp~~~~~~~~~w~~i~~l~~~mcW~~~~~~~~v~iwrKp~~~~c~---~~~~~~~p~~C~~~~d~d~ 298 (527)
|.-| ||.++.-+ .....|..++.....|..-...--.+..-|.--...... ..-+.+ ..|+.
T Consensus 139 k~~g~~gy~~~~~~~----~s~~~~~~~Q~~l~~~gl~i~dii~~Fn~Y~ga~~i~~~~~~~~l~v~--------~~~~~ 206 (243)
T PF01861_consen 139 KGEGCAGYFGFTHKE----ASPDKWLEVQRFLLEMGLVITDIIPDFNRYEGAEIIGNTRFWQVLPVK--------KRPEK 206 (243)
T ss_dssp -STT-EEEEEE-TTT------HHHHHHHHHHHHTS--EEEEEEEEEEEB---S-GGGSHHHHHSSS------------SS
T ss_pred CCCCceEEEEEecCc----CcHHHHHHHHHHHHHCCcCHHHHHhhhcccccchhhcccceeEEeccc--------ccccc
Confidence 7645 44444321 124568888888778776665555555555543221111 111111 27788
Q ss_pred cccccccc
Q 009719 299 AWYFKLKK 306 (527)
Q Consensus 299 ~wy~~~~~ 306 (527)
-||..-..
T Consensus 207 ~~y~s~~~ 214 (243)
T PF01861_consen 207 IWYRSTMP 214 (243)
T ss_dssp ---EEEEE
T ss_pred ccccceeE
Confidence 89976443
No 388
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=31.54 E-value=45 Score=33.73 Aligned_cols=144 Identities=18% Similarity=0.198 Sum_probs=75.2
Q ss_pred CCCeeeEeecCCCccchhhhccCCC-eeEEEecCCCCCCchhHhhhcccccccc----cc---------CCCCCCCCC-c
Q 009719 371 TPAIRNIMDMNAFFGGFAAALTSDP-VWVMNVVPARKSSTLSVIYDRGLIGVYH----DW---------CEPFSTYPR-T 435 (527)
Q Consensus 371 ~~~iRnvmDm~ag~GgFaAaL~~~~-VwvMnvvp~~~~ntl~vi~eRGLiG~~h----dw---------ce~fstYPr-t 435 (527)
..+-++||=+|.|-|+.+..|.+.+ +=-+-+|=.|. .-+.+. |-.++..+ |- .+-....++ +
T Consensus 74 ~~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~-~Vv~~a--~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~ 150 (246)
T PF01564_consen 74 HPNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDP-EVVELA--RKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEK 150 (246)
T ss_dssp SSST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-H-HHHHHH--HHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-
T ss_pred CCCcCceEEEcCCChhhhhhhhhcCCcceEEEEecCh-HHHHHH--HHhchhhccccCCCceEEEEhhhHHHHHhccCCc
Confidence 3479999999999999999998776 42233332221 111111 11222111 10 001124666 9
Q ss_pred cchhhhcCccccccCCCCCCCCCcccccceeecccccCCcEEEEeC-----CHHHHHHHHHHHhcCCceeEEe--cCCCC
Q 009719 436 YDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD-----SPEVIDKVSRIANTVRWTAAVH--DKEPG 508 (527)
Q Consensus 436 yDLiHa~~~fs~~~~~~~~~~rC~~~~illEmDRILRP~G~~iird-----~~~~~~~i~~i~~~l~W~~~~~--~~e~~ 508 (527)
||+|=.+. +... ......--...+-.+-|+|+|+|.+++.- ..+.+..+.+.+++..-.+... .....
T Consensus 151 yDvIi~D~-~dp~----~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~~i~~tl~~~F~~v~~~~~~vP~~ 225 (246)
T PF01564_consen 151 YDVIIVDL-TDPD----GPAPNLFTREFYQLCKRRLKPDGVLVLQAGSPFLHPELFKSILKTLRSVFPQVKPYTAYVPSY 225 (246)
T ss_dssp EEEEEEES-SSTT----SCGGGGSSHHHHHHHHHHEEEEEEEEEEEEETTTTHHHHHHHHHHHHTTSSEEEEEEEECTTS
T ss_pred ccEEEEeC-CCCC----CCcccccCHHHHHHHHhhcCCCcEEEEEccCcccchHHHHHHHHHHHHhCCceEEEEEEcCee
Confidence 99986542 2211 11111111355667889999999999973 4556666666666666666543 22222
Q ss_pred CCCCceEEEEEecc
Q 009719 509 SNGREKILVATKSL 522 (527)
Q Consensus 509 ~~~~ekiLi~~K~~ 522 (527)
+..---++++.|..
T Consensus 226 ~~~~~~~~~~s~~~ 239 (246)
T PF01564_consen 226 GSGWWSFASASKDI 239 (246)
T ss_dssp CSSEEEEEEEESST
T ss_pred cccceeEEEEeCCC
Confidence 22223466666654
No 389
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=30.97 E-value=18 Score=32.11 Aligned_cols=30 Identities=17% Similarity=0.205 Sum_probs=20.3
Q ss_pred eEeecCCCccchhhhccCCC--eeEEEecCCC
Q 009719 376 NIMDMNAFFGGFAAALTSDP--VWVMNVVPAR 405 (527)
Q Consensus 376 nvmDm~ag~GgFaAaL~~~~--VwvMnvvp~~ 405 (527)
+++|+|||.|.++..+.... .-|..+-|..
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~ 32 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLP 32 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCH
Confidence 58999999999988775432 2344555543
No 390
>PHA03412 putative methyltransferase; Provisional
Probab=30.91 E-value=20 Score=36.65 Aligned_cols=98 Identities=13% Similarity=0.067 Sum_probs=50.1
Q ss_pred eEeecCCCccchhhhccCC----CeeEEEecCCCCC-CchhHhhhccccccccccCCCCCCC--CCccchhhhcCccccc
Q 009719 376 NIMDMNAFFGGFAAALTSD----PVWVMNVVPARKS-STLSVIYDRGLIGVYHDWCEPFSTY--PRTYDLIHVSGIESLI 448 (527)
Q Consensus 376 nvmDm~ag~GgFaAaL~~~----~VwvMnvvp~~~~-ntl~vi~eRGLiG~~hdwce~fstY--PrtyDLiHa~~~fs~~ 448 (527)
.|+|+|||.|.|+.++..+ +. .+|.-++-. +.+.++- +.+.. .+=.+.-|-.+ +..||+|=++==|...
T Consensus 52 rVLDlG~GSG~Lalala~~~~~~~~--~~V~aVEID~~Al~~Ar-~n~~~-~~~~~~D~~~~~~~~~FDlIIsNPPY~~~ 127 (241)
T PHA03412 52 SVVDLCAGIGGLSFAMVHMMMYAKP--REIVCVELNHTYYKLGK-RIVPE-ATWINADALTTEFDTLFDMAISNPPFGKI 127 (241)
T ss_pred EEEEccChHHHHHHHHHHhcccCCC--cEEEEEECCHHHHHHHH-hhccC-CEEEEcchhcccccCCccEEEECCCCCCc
Confidence 7999999999999987542 21 123333222 2233222 22211 11111223222 3579999888777644
Q ss_pred cCCCCCCCC---Ccccc-cceeecccccCCcEEEE
Q 009719 449 KNPGSNKNS---CSLVD-LMVEMDRMLRPEGTVVV 479 (527)
Q Consensus 449 ~~~~~~~~r---C~~~~-illEmDRILRP~G~~ii 479 (527)
.... .+.| ..+.. ++-..-|+||||++ |+
T Consensus 128 ~~~d-~~ar~~g~~~~~~li~~A~~Ll~~G~~-IL 160 (241)
T PHA03412 128 KTSD-FKGKYTGAEFEYKVIERASQIARQGTF-II 160 (241)
T ss_pred cccc-cCCcccccHHHHHHHHHHHHHcCCCEE-Ee
Confidence 3111 1122 23333 44444578898887 55
No 391
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=30.81 E-value=28 Score=34.44 Aligned_cols=66 Identities=24% Similarity=0.261 Sum_probs=40.4
Q ss_pred ChHHHHHHHHH----cCCC--cEEeeccccC-CC-----CCCCcccEEEecCcccccccChHHHHHHHhhcccCCcEEEE
Q 009719 165 SHKAQIQFALE----RGIP--AFVAMLGTRR-LP-----FPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVI 232 (527)
Q Consensus 165 ~seaqvq~A~e----Rg~p--a~~~v~dae~-LP-----FpD~SFDlV~cs~~l~hw~d~~~~aL~Ei~RVLRPGG~lvi 232 (527)
..+...++|++ .|.. +.+..+++.. |+ .+.+.||+|....-= ..-..++..+.+.|||||.+++
T Consensus 78 ~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~VFiDa~K----~~y~~y~~~~~~ll~~ggvii~ 153 (205)
T PF01596_consen 78 IDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDFVFIDADK----RNYLEYFEKALPLLRPGGVIIA 153 (205)
T ss_dssp SSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEEEEEESTG----GGHHHHHHHHHHHEEEEEEEEE
T ss_pred CcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeEEEEcccc----cchhhHHHHHhhhccCCeEEEE
Confidence 34455666643 3543 4555666532 33 124689999966432 2222388889999999999998
Q ss_pred ec
Q 009719 233 SG 234 (527)
Q Consensus 233 S~ 234 (527)
-.
T Consensus 154 DN 155 (205)
T PF01596_consen 154 DN 155 (205)
T ss_dssp ET
T ss_pred cc
Confidence 54
No 392
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=30.64 E-value=1.3e+02 Score=32.90 Aligned_cols=73 Identities=18% Similarity=0.164 Sum_probs=50.1
Q ss_pred eccCcChHHHHHHHHHc----CCC--cEEeeccccCCCCCCCcccEEEecCcccccc----cC--hHH----HHHHHhhc
Q 009719 160 FAPRDSHKAQIQFALER----GIP--AFVAMLGTRRLPFPAFSFDIVHCSRCLIPFT----AY--NAT----YLIEVDRL 223 (527)
Q Consensus 160 iAp~D~seaqvq~A~eR----g~p--a~~~v~dae~LPFpD~SFDlV~cs~~l~hw~----d~--~~~----aL~Ei~RV 223 (527)
+...|....+++.|+.. |+. +.|.++|+..|+=+-+++|+|+|+- +|. +. ... +..++.|+
T Consensus 257 ~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NP---PYGeRlg~~~~v~~LY~~fg~~lk~~ 333 (381)
T COG0116 257 IYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNP---PYGERLGSEALVAKLYREFGRTLKRL 333 (381)
T ss_pred EEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCC---CcchhcCChhhHHHHHHHHHHHHHHH
Confidence 34557778888888743 665 5678899988865549999999982 322 22 111 34456677
Q ss_pred ccCCcEEEEecC
Q 009719 224 LRPGGYLVISGP 235 (527)
Q Consensus 224 LRPGG~lviS~p 235 (527)
++-.++++++++
T Consensus 334 ~~~ws~~v~tt~ 345 (381)
T COG0116 334 LAGWSRYVFTTS 345 (381)
T ss_pred hcCCceEEEEcc
Confidence 778889999987
No 393
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=30.01 E-value=64 Score=35.26 Aligned_cols=71 Identities=15% Similarity=0.206 Sum_probs=45.0
Q ss_pred CeeeEeecCCCccchhhhc--------c------C---CCeeEE-EecCCCCCCchhH----------------------
Q 009719 373 AIRNIMDMNAFFGGFAAAL--------T------S---DPVWVM-NVVPARKSSTLSV---------------------- 412 (527)
Q Consensus 373 ~iRnvmDm~ag~GgFaAaL--------~------~---~~VwvM-nvvp~~~~ntl~v---------------------- 412 (527)
+--+|+|+|||.|.++=.+ . . ..+.|+ |=.|.+.-|||=-
T Consensus 63 ~~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~ 142 (386)
T PLN02668 63 VPFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHR 142 (386)
T ss_pred cceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCC
Confidence 3557999999999765222 1 1 136665 6666654333321
Q ss_pred -hhhccccccccccCCCCCCCC-CccchhhhcCcccccc
Q 009719 413 -IYDRGLIGVYHDWCEPFSTYP-RTYDLIHVSGIESLIK 449 (527)
Q Consensus 413 -i~eRGLiG~~hdwce~fstYP-rtyDLiHa~~~fs~~~ 449 (527)
+|--|..|.||+.. || ++-+++|.+..+ +|-
T Consensus 143 ~~f~~gvpGSFY~RL-----fP~~Slh~~~Ss~sl-HWL 175 (386)
T PLN02668 143 SYFAAGVPGSFYRRL-----FPARSIDVFHSAFSL-HWL 175 (386)
T ss_pred ceEEEecCccccccc-----cCCCceEEEEeeccc-eec
Confidence 23345678888765 55 899999998776 353
No 394
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=29.22 E-value=27 Score=34.85 Aligned_cols=27 Identities=30% Similarity=0.442 Sum_probs=17.9
Q ss_pred eeEeecCCCccchh--hhccC-CCeeEEEe
Q 009719 375 RNIMDMNAFFGGFA--AALTS-DPVWVMNV 401 (527)
Q Consensus 375 RnvmDm~ag~GgFa--AaL~~-~~VwvMnv 401 (527)
++|+|.|||+|.|| |+|.. .-|.-+-+
T Consensus 47 ~~V~DlG~GTG~La~ga~~lGa~~V~~vdi 76 (198)
T COG2263 47 KTVLDLGAGTGILAIGAALLGASRVLAVDI 76 (198)
T ss_pred CEEEEcCCCcCHHHHHHHhcCCcEEEEEec
Confidence 45999999999764 44443 44554443
No 395
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=29.07 E-value=12 Score=35.27 Aligned_cols=63 Identities=25% Similarity=0.328 Sum_probs=34.4
Q ss_pred ccccceeecccccCCcEEEEe-CCHH----HHHHHHHHHhcCCceeEEe-cCC---------CCCCCCceEEEEEecc
Q 009719 460 LVDLMVEMDRMLRPEGTVVVR-DSPE----VIDKVSRIANTVRWTAAVH-DKE---------PGSNGREKILVATKSL 522 (527)
Q Consensus 460 ~~~illEmDRILRP~G~~iir-d~~~----~~~~i~~i~~~l~W~~~~~-~~e---------~~~~~~ekiLi~~K~~ 522 (527)
+..++-|+-|+|+|+|+++|- +... ....+.+.+..+.+.-.+. ... .-....|-||+..|.-
T Consensus 35 ~~~~~~~~~rvLk~~g~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~iiW~K~~~~~~~~~~~~~~~~E~il~~~K~~ 112 (231)
T PF01555_consen 35 MEEWLKECYRVLKPGGSIFIFIDDREIAGFLFELALEIFGGFFLRNEIIWNKPNGMPKSNKKRFSNSHEYILVFSKDK 112 (231)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEE-CCEECTHHHHHHHHHHTT-EEEEEEEEE-SSSTTSSTCCS-B--EEEEEEEESST
T ss_pred HHHHHHHHHhhcCCCeeEEEEecchhhhHHHHHHHHHHhhhhheeccceeEecCccccccccccccchhhhhcccccc
Confidence 357899999999999999886 2211 3344444433222211111 111 1233458899998864
No 396
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=28.72 E-value=66 Score=34.81 Aligned_cols=86 Identities=9% Similarity=0.127 Sum_probs=53.1
Q ss_pred hhccccccccC--CeeEEeeccCcChHHHHHHHHHc----CCC-cEEeeccccCC-CCCCCcccEEEecCcccccccChH
Q 009719 143 VASFGGSMLSE--NILTLSFAPRDSHKAQIQFALER----GIP-AFVAMLGTRRL-PFPAFSFDIVHCSRCLIPFTAYNA 214 (527)
Q Consensus 143 vgsfga~Ll~r--~V~~msiAp~D~seaqvq~A~eR----g~p-a~~~v~dae~L-PFpD~SFDlV~cs~~l~hw~d~~~ 214 (527)
+|.+|-.++.+ |+. .+...|.++..++.+++. ++. ..+...|+..+ ....+.||+|... ++.....
T Consensus 55 sG~rgir~a~e~~ga~--~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlD----PfGs~~~ 128 (374)
T TIGR00308 55 SGIRAIRYAHEIEGVR--EVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDID----PFGTPAP 128 (374)
T ss_pred hhHHHHHHHhhCCCCC--EEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeC----CCCCcHH
Confidence 67777777665 432 222235555555555432 333 44555665543 2234679999864 3333334
Q ss_pred HHHHHHhhcccCCcEEEEecC
Q 009719 215 TYLIEVDRLLRPGGYLVISGP 235 (527)
Q Consensus 215 ~aL~Ei~RVLRPGG~lviS~p 235 (527)
++..+.+.+++||.+.++.+
T Consensus 129 -fld~al~~~~~~glL~vTaT 148 (374)
T TIGR00308 129 -FVDSAIQASAERGLLLVTAT 148 (374)
T ss_pred -HHHHHHHhcccCCEEEEEec
Confidence 99999999999999999843
No 397
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=28.51 E-value=16 Score=37.73 Aligned_cols=99 Identities=19% Similarity=0.245 Sum_probs=61.0
Q ss_pred CeeeEeecCCCccchhhhccCCCe--eEEEecCCCCCCchhHhhhccccccccccCCCCCCCC-CccchhhhcCcccccc
Q 009719 373 AIRNIMDMNAFFGGFAAALTSDPV--WVMNVVPARKSSTLSVIYDRGLIGVYHDWCEPFSTYP-RTYDLIHVSGIESLIK 449 (527)
Q Consensus 373 ~iRnvmDm~ag~GgFaAaL~~~~V--wvMnvvp~~~~ntl~vi~eRGLiG~~hdwce~fstYP-rtyDLiHa~~~fs~~~ 449 (527)
..-.++|+||+.|-.+-.|+..+| .+|-=...+.-.+-+-.-|-+++-.|-.--|-|--|- +++|||-.+ +=-+|.
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisS-lslHW~ 150 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISS-LSLHWT 150 (325)
T ss_pred hCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhh-hhhhhh
Confidence 477899999999999999988886 3331111111111122233455555544455554444 899998754 333565
Q ss_pred CCCCCCCCCcccccceeecccccCCcEEEEe
Q 009719 450 NPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 480 (527)
Q Consensus 450 ~~~~~~~rC~~~~illEmDRILRP~G~~iir 480 (527)
+ ++.--|+..--+|+|.|.||-+
T Consensus 151 ------N--dLPg~m~~ck~~lKPDg~Fias 173 (325)
T KOG2940|consen 151 ------N--DLPGSMIQCKLALKPDGLFIAS 173 (325)
T ss_pred ------c--cCchHHHHHHHhcCCCccchhH
Confidence 1 2334566667789999999876
No 398
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=28.38 E-value=2.1e+02 Score=28.81 Aligned_cols=140 Identities=17% Similarity=0.222 Sum_probs=78.8
Q ss_pred cchhhHHHHHHHHHHHHHhhhccCCCCeeeEeecCCCccch---hhhccCCCeeEEEecCCCCC-Cch-hHhhhccc--c
Q 009719 347 FEADSRRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGF---AAALTSDPVWVMNVVPARKS-STL-SVIYDRGL--I 419 (527)
Q Consensus 347 f~~d~~~W~~~v~~Y~~~l~~~i~~~~iRnvmDm~ag~GgF---aAaL~~~~VwvMnvvp~~~~-ntl-~vi~eRGL--i 419 (527)
..+..+.|.+++-.=...+. .+... -.+++|+|+|-| | --|+...++=|-=+=+.... +=| .++-|=|| +
T Consensus 43 ~~~~~e~~~rHilDSl~~~~-~~~~~-~~~~~DIGSGaG-fPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv 119 (215)
T COG0357 43 IRDPEELWQRHILDSLVLLP-YLDGK-AKRVLDIGSGAG-FPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENV 119 (215)
T ss_pred CCCHHHHHHHHHHHHhhhhh-ccccc-CCEEEEeCCCCC-CchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCe
Confidence 44567888887744332111 11111 478999999954 4 22333333322111122221 211 34556667 6
Q ss_pred ccccccCCCCCCCCCc-cchhhhcCccccccCCCCCCCCCccccccee-ecccccCCcEEE---EeCCHHHHHHHHHHHh
Q 009719 420 GVYHDWCEPFSTYPRT-YDLIHVSGIESLIKNPGSNKNSCSLVDLMVE-MDRMLRPEGTVV---VRDSPEVIDKVSRIAN 494 (527)
Q Consensus 420 G~~hdwce~fstYPrt-yDLiHa~~~fs~~~~~~~~~~rC~~~~illE-mDRILRP~G~~i---ird~~~~~~~i~~i~~ 494 (527)
-++|..=|.|.-= .. ||.|=| +-|. ++. .|+| .=..|++||+++ +.--.+++.++++-..
T Consensus 120 ~i~~~RaE~~~~~-~~~~D~vts-RAva------------~L~-~l~e~~~pllk~~g~~~~~k~~~~~~e~~e~~~a~~ 184 (215)
T COG0357 120 EIVHGRAEEFGQE-KKQYDVVTS-RAVA------------SLN-VLLELCLPLLKVGGGFLAYKGLAGKDELPEAEKAIL 184 (215)
T ss_pred EEehhhHhhcccc-cccCcEEEe-ehcc------------chH-HHHHHHHHhcccCCcchhhhHHhhhhhHHHHHHHHH
Confidence 7888888887621 12 998865 2332 222 3333 346889988874 3345678888888888
Q ss_pred cCCceeEEec
Q 009719 495 TVRWTAAVHD 504 (527)
Q Consensus 495 ~l~W~~~~~~ 504 (527)
...+.+..+.
T Consensus 185 ~~~~~~~~~~ 194 (215)
T COG0357 185 PLGGQVEKVF 194 (215)
T ss_pred hhcCcEEEEE
Confidence 8888876653
No 399
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=28.33 E-value=57 Score=33.60 Aligned_cols=113 Identities=19% Similarity=0.247 Sum_probs=63.7
Q ss_pred eeeEeecCCCccchhhhccCCC---eeEEEecCCCCCCchhHhhhccc-cccccccCCCCC-C---CCCccchhhhcCcc
Q 009719 374 IRNIMDMNAFFGGFAAALTSDP---VWVMNVVPARKSSTLSVIYDRGL-IGVYHDWCEPFS-T---YPRTYDLIHVSGIE 445 (527)
Q Consensus 374 iRnvmDm~ag~GgFaAaL~~~~---VwvMnvvp~~~~ntl~vi~eRGL-iG~~hdwce~fs-t---YPrtyDLiHa~~~f 445 (527)
=|+++|+|+-+|||--.|..+. |.-+-| +.|||--=+.-.. +=+| .-+-... | +..-.||+=|+--|
T Consensus 80 ~kv~LDiGsSTGGFTd~lLq~gAk~VyavDV----G~~Ql~~kLR~d~rV~~~-E~tN~r~l~~~~~~~~~d~~v~DvSF 154 (245)
T COG1189 80 GKVVLDIGSSTGGFTDVLLQRGAKHVYAVDV----GYGQLHWKLRNDPRVIVL-ERTNVRYLTPEDFTEKPDLIVIDVSF 154 (245)
T ss_pred CCEEEEecCCCccHHHHHHHcCCcEEEEEEc----cCCccCHhHhcCCcEEEE-ecCChhhCCHHHcccCCCeEEEEeeh
Confidence 4789999999999987666553 222211 1122211111110 0000 0000000 0 00134666666555
Q ss_pred ccccCCCCCCCCCcccccceeecccccCCcEEEEe-------------------CC---HHHHHHHHHHHhcCCceeEEe
Q 009719 446 SLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR-------------------DS---PEVIDKVSRIANTVRWTAAVH 503 (527)
Q Consensus 446 s~~~~~~~~~~rC~~~~illEmDRILRP~G~~iir-------------------d~---~~~~~~i~~i~~~l~W~~~~~ 503 (527)
.. +..||-.++.+|-|+|-++.- |. ..++.+|++.++.+.|.+.-.
T Consensus 155 IS------------L~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~~~~~~v~~~i~~~~~~~g~~~~gl 222 (245)
T COG1189 155 IS------------LKLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDPKLHAEVLSKIENFAKELGFQVKGL 222 (245)
T ss_pred hh------------HHHHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCceecCcchHHHHHHHHHHHHhhcCcEEeee
Confidence 42 245888888999988888764 32 568999999999999997643
No 400
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=28.22 E-value=73 Score=33.91 Aligned_cols=51 Identities=14% Similarity=0.201 Sum_probs=32.6
Q ss_pred cccccCCcEEEEeCCHHHHHH-HHHHHhcCCceeE---EecCCCCCCCCceEEEEEe
Q 009719 468 DRMLRPEGTVVVRDSPEVIDK-VSRIANTVRWTAA---VHDKEPGSNGREKILVATK 520 (527)
Q Consensus 468 DRILRP~G~~iird~~~~~~~-i~~i~~~l~W~~~---~~~~e~~~~~~ekiLi~~K 520 (527)
+.|++|++.++|+=++..+.+ ++.+.++ |++. ..|.=+.+..=|-|.+-.+
T Consensus 298 ~~l~~~~~ivYvsC~p~tlaRDl~~L~~~--Y~l~~v~~~DmFP~T~HvE~v~lL~r 352 (353)
T TIGR02143 298 KLVQAYERILYISCNPETLKANLEQLSET--HRVERFALFDQFPYTHHMECGVLLER 352 (353)
T ss_pred HHHHcCCcEEEEEcCHHHHHHHHHHHhcC--cEEEEEEEcccCCCCCcEEEEEEEEe
Confidence 356779999999977765544 6666655 7764 3355455555566655443
No 401
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=27.47 E-value=2.1e+02 Score=29.19 Aligned_cols=132 Identities=20% Similarity=0.309 Sum_probs=87.9
Q ss_pred eEeecCCCccchhhhc---cCCC-eeEEEecCCCCCCchhHhhhcc-ccccccccCCCCCCCCCccchh--hhcCccccc
Q 009719 376 NIMDMNAFFGGFAAAL---TSDP-VWVMNVVPARKSSTLSVIYDRG-LIGVYHDWCEPFSTYPRTYDLI--HVSGIESLI 448 (527)
Q Consensus 376 nvmDm~ag~GgFaAaL---~~~~-VwvMnvvp~~~~ntl~vi~eRG-LiG~~hdwce~fstYPrtyDLi--Ha~~~fs~~ 448 (527)
-||=.||-.|.-+... ...+ |.-+-+.|.-...-|.++-+|- ++.++-| -++|-+|=.+ |.+-+|...
T Consensus 79 ~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~D-----A~~P~~Y~~~Ve~VDviy~DV 153 (231)
T COG1889 79 KVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNIIPILED-----ARKPEKYRHLVEKVDVIYQDV 153 (231)
T ss_pred EEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCceeeecc-----cCCcHHhhhhcccccEEEEec
Confidence 5888999999887766 3334 6777888887778888888886 7888877 3467777654 566666665
Q ss_pred cCCCCCCCCCcccccceeecccccCCcEEEEe----------CCHHHHH-HHHHHHhcCCceeE-EecCCCCCCCCceEE
Q 009719 449 KNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR----------DSPEVID-KVSRIANTVRWTAA-VHDKEPGSNGREKIL 516 (527)
Q Consensus 449 ~~~~~~~~rC~~~~illEmDRILRP~G~~iir----------d~~~~~~-~i~~i~~~l~W~~~-~~~~e~~~~~~ekiL 516 (527)
- ++=..+.+..-++.-|++|||+++. |..++.. +++++-. =..++. ..+.|+. +++-.+
T Consensus 154 A------Qp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~vf~~ev~kL~~-~~f~i~e~~~LePy--e~DH~~ 224 (231)
T COG1889 154 A------QPNQAEILADNAEFFLKKGGYVVIAIKARSIDVTADPEEVFKDEVEKLEE-GGFEILEVVDLEPY--EKDHAL 224 (231)
T ss_pred C------CchHHHHHHHHHHHhcccCCeEEEEEEeecccccCCHHHHHHHHHHHHHh-cCceeeEEeccCCc--ccceEE
Confidence 4 2233456677789999999999886 3344555 4555433 234443 3355544 456677
Q ss_pred EEEec
Q 009719 517 VATKS 521 (527)
Q Consensus 517 i~~K~ 521 (527)
|..|.
T Consensus 225 i~~~~ 229 (231)
T COG1889 225 IVAKY 229 (231)
T ss_pred EEEee
Confidence 66553
No 402
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=26.64 E-value=66 Score=30.39 Aligned_cols=52 Identities=13% Similarity=0.252 Sum_probs=33.9
Q ss_pred ccccCCcEEEEe---C---CHHHHHHHHHHHhcC---CceeEEecCCCCCCCCceEEEEEe
Q 009719 469 RMLRPEGTVVVR---D---SPEVIDKVSRIANTV---RWTAAVHDKEPGSNGREKILVATK 520 (527)
Q Consensus 469 RILRP~G~~iir---d---~~~~~~~i~~i~~~l---~W~~~~~~~e~~~~~~ekiLi~~K 520 (527)
++|+|||.++|- . -.+.-+.|.+.+++| .|.+.....-+-...+..+++.+|
T Consensus 80 ~lL~~gG~i~iv~Y~GH~gG~eE~~av~~~~~~L~~~~~~V~~~~~~N~~~~pp~l~~ieK 140 (140)
T PF06962_consen 80 ELLKPGGIITIVVYPGHPGGKEESEAVEEFLASLDQKEFNVLKYQFINQKNNPPLLVIIEK 140 (140)
T ss_dssp HHEEEEEEEEEEE--STCHHHHHHHHHHHHHHTS-TTTEEEEEEEESS-SS---EEEEEEE
T ss_pred HhhccCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCcceEEEEEEEccCCCCCCCEEEEEEC
Confidence 579999999886 1 234556677776665 577777766666667777888776
No 403
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=26.62 E-value=68 Score=31.74 Aligned_cols=82 Identities=16% Similarity=0.156 Sum_probs=44.2
Q ss_pred hhcccccccc--CC--eeEEeeccCcChHHHHHHHHHcCCCc--EEeeccccCCCCCCCcccEEEecCcccccccChHHH
Q 009719 143 VASFGGSMLS--EN--ILTLSFAPRDSHKAQIQFALERGIPA--FVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATY 216 (527)
Q Consensus 143 vgsfga~Ll~--r~--V~~msiAp~D~seaqvq~A~eRg~pa--~~~v~dae~LPFpD~SFDlV~cs~~l~hw~d~~~~a 216 (527)
+|.|+-.+.. ++ |.+.++.| +.-+-+.+-++..++.. ....+|+..++- .+.||-|++.+ +.....+
T Consensus 112 IG~f~l~~ak~~~~~~V~A~d~Np-~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~-~~~~drvim~l-----p~~~~~f 184 (200)
T PF02475_consen 112 IGPFSLPIAKHGKAKRVYAVDLNP-DAVEYLKENIRLNKVENRIEVINGDAREFLP-EGKFDRVIMNL-----PESSLEF 184 (200)
T ss_dssp TTTTHHHHHHHT-SSEEEEEES-H-HHHHHHHHHHHHTT-TTTEEEEES-GGG----TT-EEEEEE-------TSSGGGG
T ss_pred ccHHHHHHhhhcCccEEEEecCCH-HHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC-ccccCEEEECC-----hHHHHHH
Confidence 5666555554 33 44555544 23333344444445543 356688777655 89999888653 2222238
Q ss_pred HHHHhhcccCCcEEE
Q 009719 217 LIEVDRLLRPGGYLV 231 (527)
Q Consensus 217 L~Ei~RVLRPGG~lv 231 (527)
|.++.+.+|+||.+-
T Consensus 185 l~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 185 LDAALSLLKEGGIIH 199 (200)
T ss_dssp HHHHHHHEEEEEEEE
T ss_pred HHHHHHHhcCCcEEE
Confidence 999999999999874
No 404
>cd06060 misato Human Misato shows similarity with Tubulin/FtsZ family of GTPases and is localized to the the outer membrane of mitochondria. It has a role in mitochondrial fusion and in mitochondrial distribution and morphology. Mutations in its Drosophila homolog (misato) lead to irregular chromosome segregation during mitosis. Deletion of the budding yeast homolog DML1 is lethal and unregulate expression of DML1 leads to mitochondrial dispersion and abnormalities in cell morphology. The Misato/DML1 protein family is conserved from yeast to human, but its exact function is still unknown.
Probab=25.88 E-value=52 Score=37.03 Aligned_cols=33 Identities=15% Similarity=0.271 Sum_probs=25.1
Q ss_pred CCeeeEeecCCCccchhhhccC--------CCeeEEEecCC
Q 009719 372 PAIRNIMDMNAFFGGFAAALTS--------DPVWVMNVVPA 404 (527)
Q Consensus 372 ~~iRnvmDm~ag~GgFaAaL~~--------~~VwvMnvvp~ 404 (527)
..+..+.|++-|+|||+|.+.+ +.++.-.+.|.
T Consensus 152 QGFqi~~sl~gG~sG~gs~lLE~L~DEy~k~~i~~~~v~P~ 192 (493)
T cd06060 152 QGFQVLCDLHDGFSGVGAKCLEHLQDEYGKASLLFPGLPPV 192 (493)
T ss_pred ccEEEEEecCCcccchHHHHHHHHHHhcCccceeEEEeCCC
Confidence 4688999999999999998843 34555566664
No 405
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=25.15 E-value=32 Score=35.12 Aligned_cols=66 Identities=11% Similarity=0.117 Sum_probs=41.0
Q ss_pred cChHHHHHHHHHcCCCcEEeeccccCCCCCCCcccEEEecCcccccccChHHHHHHHhhcccC-CcEEEEec
Q 009719 164 DSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRP-GGYLVISG 234 (527)
Q Consensus 164 D~seaqvq~A~eRg~pa~~~v~dae~LPFpD~SFDlV~cs~~l~hw~d~~~~aL~Ei~RVLRP-GG~lviS~ 234 (527)
..|..|...-.+++..+. ...+-. -.|-.||+|.|--.+--- .+..++|.+|+-||+| +|+.+++-
T Consensus 141 ElS~tMr~rL~kk~ynVl-~~~ew~---~t~~k~dli~clNlLDRc-~~p~kLL~Di~~vl~psngrvivaL 207 (288)
T KOG3987|consen 141 ELSWTMRDRLKKKNYNVL-TEIEWL---QTDVKLDLILCLNLLDRC-FDPFKLLEDIHLVLAPSNGRVIVAL 207 (288)
T ss_pred HhhHHHHHHHhhcCCcee-eehhhh---hcCceeehHHHHHHHHhh-cChHHHHHHHHHHhccCCCcEEEEE
Confidence 456677666555553322 211211 124459999987555222 3344599999999999 99988753
No 406
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=25.01 E-value=51 Score=34.65 Aligned_cols=19 Identities=21% Similarity=0.081 Sum_probs=17.2
Q ss_pred eEeecCCCccchhhhccCC
Q 009719 376 NIMDMNAFFGGFAAALTSD 394 (527)
Q Consensus 376 nvmDm~ag~GgFaAaL~~~ 394 (527)
+++|+.||.||++.++.+.
T Consensus 22 ~vlD~TlG~GGhS~~il~~ 40 (296)
T PRK00050 22 IYVDGTFGGGGHSRAILER 40 (296)
T ss_pred EEEEeCcCChHHHHHHHHh
Confidence 7999999999999999655
No 407
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=24.88 E-value=61 Score=33.60 Aligned_cols=38 Identities=29% Similarity=0.414 Sum_probs=24.0
Q ss_pred CcccEEEecC-----cccccccChH-----HHHHHHhhcccCCcEEEE
Q 009719 195 FSFDIVHCSR-----CLIPFTAYNA-----TYLIEVDRLLRPGGYLVI 232 (527)
Q Consensus 195 ~SFDlV~cs~-----~l~hw~d~~~-----~aL~Ei~RVLRPGG~lvi 232 (527)
+--|+|+|.- .+|.+.+..+ .+|.-..+||||||.||.
T Consensus 114 ekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVa 161 (294)
T KOG1099|consen 114 EKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVA 161 (294)
T ss_pred CCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeeh
Confidence 3456666553 3444433322 267777899999999985
No 408
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=24.86 E-value=1.7e+02 Score=29.16 Aligned_cols=50 Identities=36% Similarity=0.760 Sum_probs=36.0
Q ss_pred HHHHHHhhcccCCcEEEEecCCCCCCCchhHHHHHHHHHHhcceEEeeeecceEEEeCCCc
Q 009719 215 TYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIAVDGNTVIWKKPVG 275 (527)
Q Consensus 215 ~aL~Ei~RVLRPGG~lviS~pp~~~~~~~~~w~~i~~l~~~mcW~~~~~~~~v~iwrKp~~ 275 (527)
..+.|+.|||+++|.+++..+. .....+....+.+.|+.. ..-||.|+..
T Consensus 80 ~~~~~~~rvl~~~~~~~v~~~~-------~~~~~~~~~~~~~gf~~~----~~iiw~k~~~ 129 (302)
T COG0863 80 QWLAEQKRVLKPGGSLYVIDPF-------SNLARIEDIAKKLGFEIL----GKIIWKKPSP 129 (302)
T ss_pred HHHHHhhheecCCCEEEEECCc-------hhhhHHHHHHHhCCCeEe----eeEEEeCCCC
Confidence 4789999999999999998874 122344555555556555 5678999866
No 409
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=23.71 E-value=43 Score=34.21 Aligned_cols=24 Identities=21% Similarity=0.223 Sum_probs=17.2
Q ss_pred CCCCeeeEeecCCCccchhhhccC
Q 009719 370 GTPAIRNIMDMNAFFGGFAAALTS 393 (527)
Q Consensus 370 ~~~~iRnvmDm~ag~GgFaAaL~~ 393 (527)
....-..|+|..||.|+|.++..+
T Consensus 43 ~~~~~~~VlDPacGsG~fL~~~~~ 66 (311)
T PF02384_consen 43 NPKKGDSVLDPACGSGGFLVAAME 66 (311)
T ss_dssp TT-TTEEEEETT-TTSHHHHHHHH
T ss_pred hccccceeechhhhHHHHHHHHHH
Confidence 444456799999999999877754
No 410
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=23.53 E-value=1.5e+02 Score=30.45 Aligned_cols=65 Identities=17% Similarity=0.111 Sum_probs=36.7
Q ss_pred cChHHHHHHHHHcCCCcEEeec--cccCCCCCCCcccEEEecCcccccccChHHHHHHHhhcccCCcEEEEecC
Q 009719 164 DSHKAQIQFALERGIPAFVAML--GTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 235 (527)
Q Consensus 164 D~seaqvq~A~eRg~pa~~~v~--dae~LPFpD~SFDlV~cs~~l~hw~d~~~~aL~Ei~RVLRPGG~lviS~p 235 (527)
+.++..+++|++.|....+-.. +...+.-..+.||+|+-.-. .. ..+.+..+.|||||.+++.+.
T Consensus 201 ~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G------~~-~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 201 DVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSG------HP-SSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred eCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCC------CH-HHHHHHHHHhhcCCEEEEEcc
Confidence 3345666677666643222110 11111111234888874422 12 268889999999999998764
No 411
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=23.35 E-value=39 Score=31.65 Aligned_cols=39 Identities=28% Similarity=0.364 Sum_probs=22.2
Q ss_pred CcccEEEecCccccccc----ChH-------HHHHHHhhcccCCcEEEEec
Q 009719 195 FSFDIVHCSRCLIPFTA----YNA-------TYLIEVDRLLRPGGYLVISG 234 (527)
Q Consensus 195 ~SFDlV~cs~~l~hw~d----~~~-------~aL~Ei~RVLRPGG~lviS~ 234 (527)
+.||+|+|..+. +... +.. .+|.=+...|||||.|++-.
T Consensus 90 ~~~dlv~~D~~~-~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~ 139 (181)
T PF01728_consen 90 EKFDLVLSDMAP-NVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKV 139 (181)
T ss_dssp CSESEEEE--------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEE
T ss_pred cCcceecccccc-CCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEe
Confidence 799999988621 2211 111 14444557799999999855
No 412
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=23.12 E-value=54 Score=34.81 Aligned_cols=29 Identities=10% Similarity=0.109 Sum_probs=19.6
Q ss_pred CCCeeeEeecCCCccchhhhccC-CCeeEE
Q 009719 371 TPAIRNIMDMNAFFGGFAAALTS-DPVWVM 399 (527)
Q Consensus 371 ~~~iRnvmDm~ag~GgFaAaL~~-~~VwvM 399 (527)
.+.-..|||+|||.|+.+..|.. .+-|-+
T Consensus 112 ~~~~~~vLDIGtGag~I~~lLa~~~~~~~~ 141 (321)
T PRK11727 112 RGANVRVLDIGVGANCIYPLIGVHEYGWRF 141 (321)
T ss_pred CCCCceEEEecCCccHHHHHHHhhCCCCEE
Confidence 34446799999999988776643 234543
No 413
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=23.09 E-value=58 Score=35.16 Aligned_cols=29 Identities=17% Similarity=0.209 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhccCCCCeeeEeecCCCcc
Q 009719 357 RVAYYKNTLNVKLGTPAIRNIMDMNAFFG 385 (527)
Q Consensus 357 ~v~~Y~~~l~~~i~~~~iRnvmDm~ag~G 385 (527)
|...|.+.+...=.-=+=++|||+|||+|
T Consensus 44 Rt~aYr~~i~~n~~lf~dK~VlDVGcGtG 72 (346)
T KOG1499|consen 44 RTLAYRNAILQNKHLFKDKTVLDVGCGTG 72 (346)
T ss_pred hHHHHHHHHhcchhhcCCCEEEEcCCCcc
No 414
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=21.65 E-value=85 Score=31.12 Aligned_cols=98 Identities=21% Similarity=0.266 Sum_probs=46.7
Q ss_pred HHHHHhhhccCCCCeeeEeecCCCccchhhhcc---CCCeeEEEecCCCCC-CchhHhhh-ccc--cc-cccccCCCCCC
Q 009719 360 YYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALT---SDPVWVMNVVPARKS-STLSVIYD-RGL--IG-VYHDWCEPFST 431 (527)
Q Consensus 360 ~Y~~~l~~~i~~~~iRnvmDm~ag~GgFaAaL~---~~~VwvMnvvp~~~~-ntl~vi~e-RGL--iG-~~hdwce~fst 431 (527)
...+.|. ++.+. .|||+|||+|=++|.|. .+.--|..|-....- ..-.-.++ .|+ +- +..|=.+ -
T Consensus 63 ~~l~~L~--l~pg~--~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~---g 135 (209)
T PF01135_consen 63 RMLEALD--LKPGD--RVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSE---G 135 (209)
T ss_dssp HHHHHTT--C-TT---EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGG---T
T ss_pred HHHHHHh--cCCCC--EEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhh---c
Confidence 3344444 66664 79999999998887773 222234444322110 11111111 122 11 2223222 2
Q ss_pred CC--CccchhhhcCccccccCCCCCCCCCcccccceeecccccCCcEEEE
Q 009719 432 YP--RTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVV 479 (527)
Q Consensus 432 YP--rtyDLiHa~~~fs~~~~~~~~~~rC~~~~illEmDRILRP~G~~ii 479 (527)
+| -.||.||...-... +..-++| -|+|||.+|+
T Consensus 136 ~~~~apfD~I~v~~a~~~------------ip~~l~~---qL~~gGrLV~ 170 (209)
T PF01135_consen 136 WPEEAPFDRIIVTAAVPE------------IPEALLE---QLKPGGRLVA 170 (209)
T ss_dssp TGGG-SEEEEEESSBBSS--------------HHHHH---TEEEEEEEEE
T ss_pred cccCCCcCEEEEeeccch------------HHHHHHH---hcCCCcEEEE
Confidence 33 35999998643321 1233444 4999999986
No 415
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=21.38 E-value=47 Score=28.21 Aligned_cols=52 Identities=19% Similarity=0.162 Sum_probs=30.4
Q ss_pred cEEeeccccC-CC-CCCCcccEEEecCcccccccChHHHHHHHhhcccCCcEEEEe
Q 009719 180 AFVAMLGTRR-LP-FPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVIS 233 (527)
Q Consensus 180 a~~~v~dae~-LP-FpD~SFDlV~cs~~l~hw~d~~~~aL~Ei~RVLRPGG~lviS 233 (527)
..+..+++.. ++ ++++.||+++.--. |-.+.....|..+.+.|+|||.+++-
T Consensus 51 ~~~~~g~s~~~l~~~~~~~~dli~iDg~--H~~~~~~~dl~~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 51 VEFIQGDSPDFLPSLPDGPIDLIFIDGD--HSYEAVLRDLENALPRLAPGGVIVFD 104 (106)
T ss_dssp EEEEES-THHHHHHHHH--EEEEEEES-----HHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred EEEEEcCcHHHHHHcCCCCEEEEEECCC--CCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 4455555422 22 33789999997642 32223334888899999999999874
No 416
>PRK11524 putative methyltransferase; Provisional
Probab=20.60 E-value=99 Score=31.67 Aligned_cols=29 Identities=24% Similarity=0.417 Sum_probs=22.1
Q ss_pred cccceeecccccCCcEEEEeCCHHHHHHH
Q 009719 461 VDLMVEMDRMLRPEGTVVVRDSPEVIDKV 489 (527)
Q Consensus 461 ~~illEmDRILRP~G~~iird~~~~~~~i 489 (527)
..+|-|+=|+|+|||.+++--....+..+
T Consensus 60 ~~~l~~~~rvLK~~G~i~i~~~~~~~~~~ 88 (284)
T PRK11524 60 YEWIDECHRVLKKQGTMYIMNSTENMPFI 88 (284)
T ss_pred HHHHHHHHHHhCCCcEEEEEcCchhhhHH
Confidence 56889999999999999987554443333
No 417
>CHL00125 psaE photosystem I subunit IV; Reviewed
Probab=20.46 E-value=46 Score=27.50 Aligned_cols=11 Identities=36% Similarity=0.350 Sum_probs=9.6
Q ss_pred ccccCCcEEEE
Q 009719 469 RMLRPEGTVVV 479 (527)
Q Consensus 469 RILRP~G~~ii 479 (527)
|||||+-||.=
T Consensus 9 rIlR~ESYWyn 19 (64)
T CHL00125 9 RILRKESYWYN 19 (64)
T ss_pred EEccccceeec
Confidence 89999999864
No 418
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=20.41 E-value=2.4e+02 Score=27.23 Aligned_cols=87 Identities=15% Similarity=0.031 Sum_probs=0.0
Q ss_pred hhccccccccCCe-eEEeeccCcChHHHHHHHHHc----CCC--cEEeeccccC----CCCCCCcccEEEecCccccccc
Q 009719 143 VASFGGSMLSENI-LTLSFAPRDSHKAQIQFALER----GIP--AFVAMLGTRR----LPFPAFSFDIVHCSRCLIPFTA 211 (527)
Q Consensus 143 vgsfga~Ll~r~V-~~msiAp~D~seaqvq~A~eR----g~p--a~~~v~dae~----LPFpD~SFDlV~cs~~l~hw~d 211 (527)
+|++|-.++++|. .+..+ |.+...++.+++. +.. +.+..+|+.+ +.-....||+|+..==...-..
T Consensus 60 sG~lglea~srga~~v~~v---E~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~DPPy~~~~~ 136 (189)
T TIGR00095 60 SGLLGEEALSRGAKVAFLE---EDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLDPPFFNGAL 136 (189)
T ss_pred CcHHHHHHHhCCCCEEEEE---eCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEECcCCCCCcH
Q ss_pred ChHHHHHHHhhcccCCcEEEE
Q 009719 212 YNATYLIEVDRLLRPGGYLVI 232 (527)
Q Consensus 212 ~~~~aL~Ei~RVLRPGG~lvi 232 (527)
..-..+..-...|++||.+++
T Consensus 137 ~~~l~~l~~~~~l~~~~iiv~ 157 (189)
T TIGR00095 137 QALLELCENNWILEDTVLIVV 157 (189)
T ss_pred HHHHHHHHHCCCCCCCeEEEE
No 419
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=20.40 E-value=2.3e+02 Score=27.29 Aligned_cols=39 Identities=33% Similarity=0.490 Sum_probs=25.7
Q ss_pred CCcccEEEecCcccccccCh-HHHHHHHhhcc-cCCcEEEEecC
Q 009719 194 AFSFDIVHCSRCLIPFTAYN-ATYLIEVDRLL-RPGGYLVISGP 235 (527)
Q Consensus 194 D~SFDlV~cs~~l~hw~d~~-~~aL~Ei~RVL-RPGG~lviS~p 235 (527)
.++||+|++. -++-..+ ..-..+..|.| |+++.++++++
T Consensus 84 ~~~~d~vv~D---PPFl~~ec~~k~a~ti~~L~k~~~kii~~Tg 124 (162)
T PF10237_consen 84 KGKFDVVVID---PPFLSEECLTKTAETIRLLLKPGGKIILCTG 124 (162)
T ss_pred CCCceEEEEC---CCCCCHHHHHHHHHHHHHHhCccceEEEecH
Confidence 6899999987 2332222 12345555555 88999999987
No 420
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=20.30 E-value=60 Score=31.84 Aligned_cols=70 Identities=14% Similarity=0.280 Sum_probs=42.0
Q ss_pred CCCCccchhhhcCccccccCCCCCCC-CCcccc--cceeecccccCCcEEEEe-----CCHH-----H--HHHHHHHHhc
Q 009719 431 TYPRTYDLIHVSGIESLIKNPGSNKN-SCSLVD--LMVEMDRMLRPEGTVVVR-----DSPE-----V--IDKVSRIANT 495 (527)
Q Consensus 431 tYPrtyDLiHa~~~fs~~~~~~~~~~-rC~~~~--illEmDRILRP~G~~iir-----d~~~-----~--~~~i~~i~~~ 495 (527)
.|+.+||.+-|.+.+.+.- .+..++ -..++| =|.++-|+|+|||.+.+. |... + -.++..+..+
T Consensus 59 ~y~~~fD~~as~~siEh~G-LGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~d~i~fNahRiYg~~rL~mm~~g 137 (177)
T PF03269_consen 59 KYAGSFDFAASFSSIEHFG-LGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGTDAIQFNAHRIYGPIRLAMMFYG 137 (177)
T ss_pred Hhhccchhhheechhcccc-ccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCCcceEEecceeecHhHHHHHhCC
Confidence 4889999987766654421 111111 123333 478889999999999997 2211 1 2345556667
Q ss_pred CCceeE
Q 009719 496 VRWTAA 501 (527)
Q Consensus 496 l~W~~~ 501 (527)
..|--.
T Consensus 138 fe~i~t 143 (177)
T PF03269_consen 138 FEWIDT 143 (177)
T ss_pred cEEEee
Confidence 666443
No 421
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=20.29 E-value=47 Score=34.14 Aligned_cols=64 Identities=22% Similarity=0.364 Sum_probs=46.0
Q ss_pred CCeeeEeecCCCccchhhhccCCCe---eE-------------------EEecCCCCC--CchhHhhhccccccccccCC
Q 009719 372 PAIRNIMDMNAFFGGFAAALTSDPV---WV-------------------MNVVPARKS--STLSVIYDRGLIGVYHDWCE 427 (527)
Q Consensus 372 ~~iRnvmDm~ag~GgFaAaL~~~~V---wv-------------------Mnvvp~~~~--ntl~vi~eRGLiG~~hdwce 427 (527)
.+=+.||.+|=|.|--+.++...|. |+ =||+|..+- |++.-+.|-++=|+|-
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~y---- 175 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYY---- 175 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchHhhhccccccCcceeEe----
Confidence 3346678888888877777766553 42 388888776 8888888888889985
Q ss_pred CCCCC-CCccchhhh
Q 009719 428 PFSTY-PRTYDLIHV 441 (527)
Q Consensus 428 ~fstY-PrtyDLiHa 441 (527)
.|| |-.=|+.|-
T Consensus 176 --DTy~e~yEdl~~~ 188 (271)
T KOG1709|consen 176 --DTYSELYEDLRHF 188 (271)
T ss_pred --echhhHHHHHHHH
Confidence 466 555577664
No 422
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=20.21 E-value=2.4e+02 Score=29.62 Aligned_cols=21 Identities=33% Similarity=0.392 Sum_probs=18.6
Q ss_pred HHHHHHhhcccCCcEEEEecC
Q 009719 215 TYLIEVDRLLRPGGYLVISGP 235 (527)
Q Consensus 215 ~aL~Ei~RVLRPGG~lviS~p 235 (527)
..+.++.|.|+|||.+++.+.
T Consensus 287 ~~~~~~~~~l~~~G~iv~~g~ 307 (386)
T cd08283 287 DALREAIQAVRKGGTVSIIGV 307 (386)
T ss_pred HHHHHHHHHhccCCEEEEEcC
Confidence 389999999999999998764
No 423
>PRK02749 photosystem I reaction center subunit IV; Provisional
Probab=20.10 E-value=47 Score=27.94 Aligned_cols=12 Identities=42% Similarity=0.468 Sum_probs=9.9
Q ss_pred cccccCCcEEEE
Q 009719 468 DRMLRPEGTVVV 479 (527)
Q Consensus 468 DRILRP~G~~ii 479 (527)
=|||||+-||.=
T Consensus 9 VrIlR~ESYWyn 20 (71)
T PRK02749 9 VRILRPESYWYN 20 (71)
T ss_pred EEEccccceeec
Confidence 389999999863
Done!