BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009720
(527 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1YP2|A Chain A, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase
pdb|1YP2|B Chain B, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase
pdb|1YP2|C Chain C, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase
pdb|1YP2|D Chain D, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase
pdb|1YP3|A Chain A, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase In Complex With Atp
pdb|1YP3|B Chain B, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase In Complex With Atp
pdb|1YP3|C Chain C, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase In Complex With Atp
pdb|1YP3|D Chain D, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase In Complex With Atp
pdb|1YP4|A Chain A, Crystal Structure Of Potato Tuber Adp-glucose
Pyrophosphorylase In Complex With Adp-glucose
pdb|1YP4|B Chain B, Crystal Structure Of Potato Tuber Adp-glucose
Pyrophosphorylase In Complex With Adp-glucose
pdb|1YP4|C Chain C, Crystal Structure Of Potato Tuber Adp-glucose
Pyrophosphorylase In Complex With Adp-glucose
pdb|1YP4|D Chain D, Crystal Structure Of Potato Tuber Adp-glucose
Pyrophosphorylase In Complex With Adp-glucose
Length = 451
Score = 472 bits (1215), Expect = e-133, Method: Compositional matrix adjust.
Identities = 222/425 (52%), Positives = 309/425 (72%), Gaps = 8/425 (1%)
Query: 106 TKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFG 165
T+L+PLT + A PAVP+ YRLIDIP+SNC+NS I+KI+VLTQFNSASLNRH++R Y
Sbjct: 32 TRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYAS 91
Query: 166 N-GTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH 224
N G +GFVEVLAA Q+P +WFQGTADAVRQ+ W+FE+ + IL GDH
Sbjct: 92 NMGGYKNEGFVEVLAAQQSP--ENPDWFQGTADAVRQYLWLFEE---HTVLEYLILAGDH 146
Query: 225 LYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKA 284
LYRMDY FIQ+H + DADIT++ + E RA+ +GL+KID GRI +FAEKP G L+A
Sbjct: 147 LYRMDYEKFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFAEKPQGEQLQA 206
Query: 285 MQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAI-ME 343
M+VDT++LG + A++ P++ASMG+YV KDV+ LLR ++P +NDFGSE+IP A +
Sbjct: 207 MKVDTTILGLDDKRAKEMPFIASMGIYVISKDVMLNLLRDKFPGANDFGSEVIPGATSLG 266
Query: 344 HDVQAYIFRDYWEDIGTIKSFYEANMALTKES-PAFHFYDPKTPFYTSPRFLPPTKIDNC 402
VQAY++ YWEDIGTI++FY AN+ +TK+ P F FYD P YT PR+LPP+K+ +
Sbjct: 267 MRVQAYLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSAPIYTQPRYLPPSKMLDA 326
Query: 403 RIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGK 462
+ D++I GC ++ C + HS+VG RS + G ++D++++GADYY+T+++ L A+G
Sbjct: 327 DVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDSLLMGADYYETDADRKLLAAKGS 386
Query: 463 VPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIE 522
VPIG+G+N I+ IIDKN +IG +V I+NKD+VQEA R G++I+SGI +++ A I
Sbjct: 387 VPIGIGKNCHIKRAIIDKNARIGDNVKIINKDNVQEAARETDGYFIKSGIVTVIKDALIP 446
Query: 523 DGMVI 527
G++I
Sbjct: 447 SGIII 451
>pdb|3BRK|X Chain X, Crystal Structure Of Adp-Glucose Pyrophosphorylase From
Agrobacterium Tumefaciens
Length = 420
Score = 181 bits (458), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 138/439 (31%), Positives = 210/439 (47%), Gaps = 62/439 (14%)
Query: 85 LERRRVDP--KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGIN 142
+ +RV P ++ A +L GG G++L LT R A PAV G R+ID +SN +NSGI
Sbjct: 1 MSEKRVQPLARDAXAYVLAGGRGSRLKELTDRRAKPAVYFGGKARIIDFALSNALNSGIR 60
Query: 143 KIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQF 202
+I V TQ+ + SL RH+ R + + F ++L A+Q E+ W++GTADAV Q
Sbjct: 61 RIGVATQYKAHSLIRHLQRGWDFFRPERNESF-DILPASQRVSET--QWYEGTADAVYQN 117
Query: 203 TWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLV 262
+ E E IL GDH+Y+ DY +Q HVD AD+TI C V A+ +G+
Sbjct: 118 IDIIEPYAP---EYXVILAGDHIYKXDYEYXLQQHVDSGADVTIGCLEVPRXEATGFGVX 174
Query: 263 KIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLL 322
++ I F EKP A+ + + GF+ +AS G+YVF L + +
Sbjct: 175 HVNEKDEIIDFIEKP--ADPPGIPGNE---GFA---------LASXGIYVFHTKFLXEAV 220
Query: 323 RWRY--PTSN-DFGSEIIPAAIMEHDVQAYIFRD-----------YWEDIGTIKSFYEAN 368
R PTS+ DFG +IIP + A+ F D YW D+GTI ++++AN
Sbjct: 221 RRDAADPTSSRDFGKDIIPYIVEHGKAVAHRFADSCVRSDFEHEPYWRDVGTIDAYWQAN 280
Query: 369 MALTKESPAFHFYDPKTPFYTSPRFLPPTKI---DNCRIKDA---IISHGCFLRECTVEH 422
+ LT P YD P +T PP K D R A ++S C + +
Sbjct: 281 IDLTDVVPDLDIYDKSWPIWTYAEITPPAKFVHDDEDRRGSAVSSVVSGDCIISGAALNR 340
Query: 423 SIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNV 482
S++ R + L++ V+L + + +GR+ ++ N +ID V
Sbjct: 341 SLLFTGVRANSYSRLENAVVLPS-------------------VKIGRHAQLSNVVIDHGV 381
Query: 483 KIGKDVVIVNKDDVQEADR 501
I + +IV +D +A R
Sbjct: 382 VI-PEGLIVGEDPELDAKR 399
>pdb|1LVW|A Chain A, Crystal Structure Of Glucose-1-phosphate
Thymidylyltransferase, Rmla, Complex With Dtdp
pdb|1LVW|B Chain B, Crystal Structure Of Glucose-1-phosphate
Thymidylyltransferase, Rmla, Complex With Dtdp
pdb|1LVW|C Chain C, Crystal Structure Of Glucose-1-phosphate
Thymidylyltransferase, Rmla, Complex With Dtdp
pdb|1LVW|D Chain D, Crystal Structure Of Glucose-1-phosphate
Thymidylyltransferase, Rmla, Complex With Dtdp
Length = 295
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 85/186 (45%), Gaps = 24/186 (12%)
Query: 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSA 153
++ I+L GG+GT+L+P+T + +P+ +I P+S + +GI I +++
Sbjct: 3 HMKGIVLAGGSGTRLYPITRAVSKQLLPIYDK-PMIYYPLSVLMLAGIRDILIISTPRDL 61
Query: 154 SLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRN 213
L R + G+G+ FG F + P +G ADA D+K
Sbjct: 62 PLYRDL----LGDGSQFGVRF--SYRVQEEP--------RGIADAFIVGKDFIGDSK--- 104
Query: 214 IENVAILCGDHL-YRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQ 272
VA++ GD++ Y + + ++ + I V + R +G+V+ D+ GR+
Sbjct: 105 ---VALVLGDNVFYGHRFSEILRRAASLEDGAVIFGYYVRDPRP--FGVVEFDSEGRVIS 159
Query: 273 FAEKPS 278
EKPS
Sbjct: 160 IEEKPS 165
>pdb|1FXO|A Chain A, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tmp Complex.
pdb|1FXO|B Chain B, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tmp Complex.
pdb|1FXO|C Chain C, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tmp Complex.
pdb|1FXO|D Chain D, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tmp Complex.
pdb|1FXO|E Chain E, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tmp Complex.
pdb|1FXO|F Chain F, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tmp Complex.
pdb|1FXO|G Chain G, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tmp Complex.
pdb|1FXO|H Chain H, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tmp Complex.
pdb|1FZW|A Chain A, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Apo Enzyme.
pdb|1FZW|B Chain B, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Apo Enzyme.
pdb|1FZW|C Chain C, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Apo Enzyme.
pdb|1FZW|D Chain D, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Apo Enzyme.
pdb|1FZW|E Chain E, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Apo Enzyme.
pdb|1FZW|F Chain F, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Apo Enzyme.
pdb|1FZW|G Chain G, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Apo Enzyme.
pdb|1FZW|H Chain H, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Apo Enzyme.
pdb|1G0R|A Chain A, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). ThymidineGLUCOSE- 1-Phosphate Complex.
pdb|1G0R|B Chain B, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). ThymidineGLUCOSE- 1-Phosphate Complex.
pdb|1G0R|C Chain C, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). ThymidineGLUCOSE- 1-Phosphate Complex.
pdb|1G0R|D Chain D, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). ThymidineGLUCOSE- 1-Phosphate Complex.
pdb|1G0R|E Chain E, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). ThymidineGLUCOSE- 1-Phosphate Complex.
pdb|1G0R|F Chain F, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). ThymidineGLUCOSE- 1-Phosphate Complex.
pdb|1G0R|G Chain G, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). ThymidineGLUCOSE- 1-Phosphate Complex.
pdb|1G0R|H Chain H, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). ThymidineGLUCOSE- 1-Phosphate Complex.
pdb|1G1L|A Chain A, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-Glucose Complex.
pdb|1G1L|B Chain B, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-Glucose Complex.
pdb|1G1L|C Chain C, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-Glucose Complex.
pdb|1G1L|D Chain D, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-Glucose Complex.
pdb|1G1L|E Chain E, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-Glucose Complex.
pdb|1G1L|F Chain F, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-Glucose Complex.
pdb|1G1L|G Chain G, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-Glucose Complex.
pdb|1G1L|H Chain H, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-Glucose Complex.
pdb|1G2V|A Chain A, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Ttp Complex.
pdb|1G2V|B Chain B, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Ttp Complex.
pdb|1G2V|C Chain C, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Ttp Complex.
pdb|1G2V|D Chain D, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Ttp Complex.
pdb|1G2V|E Chain E, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Ttp Complex.
pdb|1G2V|F Chain F, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Ttp Complex.
pdb|1G2V|G Chain G, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Ttp Complex.
pdb|1G2V|H Chain H, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Ttp Complex.
pdb|1G3L|A Chain A, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-L-Rhamnose Complex.
pdb|1G3L|B Chain B, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-L-Rhamnose Complex.
pdb|1G3L|C Chain C, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-L-Rhamnose Complex.
pdb|1G3L|D Chain D, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-L-Rhamnose Complex.
pdb|4ASJ|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ASJ|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ASJ|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ASJ|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ASY|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ASY|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ASY|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ASY|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
Length = 293
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 82/182 (45%), Gaps = 24/182 (13%)
Query: 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLN 156
IIL GG+GT+L P TL + +PV +I P+S + +GI +I +++
Sbjct: 5 GIILAGGSGTRLHPATLAISKQLLPVYDK-PMIYYPLSTLMLAGIREILIISTPQDTPRF 63
Query: 157 RHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIEN 216
+ + G+G+N+G +++ A Q + D + Q + E ++
Sbjct: 64 QQL----LGDGSNWG---LDLQYAVQP-----------SPDGLAQAFLIGESFIGNDLS- 104
Query: 217 VAILCGDHLYR-MDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAE 275
A++ GD+LY D+ + + S R ++ V + YG+V+ D G+ E
Sbjct: 105 -ALVLGDNLYYGHDFHELLGSASQRQTGASVFAYHVLDPER--YGVVEFDQGGKAISLEE 161
Query: 276 KP 277
KP
Sbjct: 162 KP 163
>pdb|4B2X|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B2X|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B2X|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B2X|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B3U|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B3U|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B3U|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B3U|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B42|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B42|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B42|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B42|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4B|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4B|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4B|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4B|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4G|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4G|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4G|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4G|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4M|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4M|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4M|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4M|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B5B|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B5B|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B5B|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B5B|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|3ZLK|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|3ZLK|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|3ZLK|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|3ZLK|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|3ZLL|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|3ZLL|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|3ZLL|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|3ZLL|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
Length = 303
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 82/182 (45%), Gaps = 24/182 (13%)
Query: 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLN 156
IIL GG+GT+L P TL + +PV +I P+S + +GI +I +++
Sbjct: 15 GIILAGGSGTRLHPATLAISKQLLPVYDK-PMIYYPLSTLMLAGIREILIISTPQDTPRF 73
Query: 157 RHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIEN 216
+ + G+G+N+G +++ A Q + D + Q + E ++
Sbjct: 74 QQL----LGDGSNWG---LDLQYAVQP-----------SPDGLAQAFLIGESFIGNDLS- 114
Query: 217 VAILCGDHLYR-MDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAE 275
A++ GD+LY D+ + + S R ++ V + YG+V+ D G+ E
Sbjct: 115 -ALVLGDNLYYGHDFHELLGSASQRQTGASVFAYHVLDPER--YGVVEFDQGGKAISLEE 171
Query: 276 KP 277
KP
Sbjct: 172 KP 173
>pdb|4ARW|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ARW|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ARW|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ARW|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
Length = 302
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 82/182 (45%), Gaps = 24/182 (13%)
Query: 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLN 156
IIL GG+GT+L P TL + +PV +I P+S + +GI +I +++
Sbjct: 14 GIILAGGSGTRLHPATLAISKQLLPVYDK-PMIYYPLSTLMLAGIREILIISTPQDTPRF 72
Query: 157 RHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIEN 216
+ + G+G+N+G +++ A Q + D + Q + E ++
Sbjct: 73 QQL----LGDGSNWG---LDLQYAVQP-----------SPDGLAQAFLIGESFIGNDLS- 113
Query: 217 VAILCGDHLYR-MDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAE 275
A++ GD+LY D+ + + S R ++ V + YG+V+ D G+ E
Sbjct: 114 -ALVLGDNLYYGHDFHELLGSASQRQTGASVFAYHVLDPER--YGVVEFDQGGKAISLEE 170
Query: 276 KP 277
KP
Sbjct: 171 KP 172
>pdb|1MP4|A Chain A, W224h Variant Of S. Enterica Rmla
pdb|1MP4|B Chain B, W224h Variant Of S. Enterica Rmla
Length = 292
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 83/186 (44%), Gaps = 24/186 (12%)
Query: 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNS 152
K IIL GG+GT+L+P+T+ + +P+ +I P+S + +GI I +++
Sbjct: 2 KTRKGIILAGGSGTRLYPVTMAVSQQLLPIYDK-PMIYYPLSTLMLAGIRDILIISTPQD 60
Query: 153 ASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNR 212
+ + G+G+ +G + Q + D + Q + E+
Sbjct: 61 TPRFQQL----LGDGSQWGLNL--------------QYKVQPSPDGLAQAFIIGEEFIGH 102
Query: 213 NIENVAILCGDHL-YRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIA 271
++ A++ GD++ Y D +++ V++++ T+ V + YG+V+ D G
Sbjct: 103 --DDCALVLGDNIFYGHDLPKLMEAAVNKESGATVFAYHVNDPER--YGVVEFDQAGTAV 158
Query: 272 QFAEKP 277
EKP
Sbjct: 159 SLEEKP 164
>pdb|1IIM|A Chain A, Thymidylyltransferase Complexed With Ttp
pdb|1IIM|B Chain B, Thymidylyltransferase Complexed With Ttp
pdb|1IIN|A Chain A, Thymidylyltransferase Complexed With Udp-Glucose
pdb|1IIN|B Chain B, Thymidylyltransferase Complexed With Udp-Glucose
pdb|1IIN|C Chain C, Thymidylyltransferase Complexed With Udp-Glucose
pdb|1IIN|D Chain D, Thymidylyltransferase Complexed With Udp-Glucose
Length = 292
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 83/186 (44%), Gaps = 24/186 (12%)
Query: 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNS 152
K IIL GG+GT+L+P+T+ + +P+ +I P+S + +GI I +++
Sbjct: 2 KTRKGIILAGGSGTRLYPVTMAVSQQLLPIYDK-PMIYYPLSTLMLAGIRDILIISTPQD 60
Query: 153 ASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNR 212
+ + G+G+ +G + Q + D + Q + E+
Sbjct: 61 TPRFQQL----LGDGSQWGLNL--------------QYKVQPSPDGLAQAFIIGEEFIGH 102
Query: 213 NIENVAILCGDHL-YRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIA 271
++ A++ GD++ Y D +++ V++++ T+ V + YG+V+ D G
Sbjct: 103 --DDCALVLGDNIFYGHDLPKLMEAAVNKESGATVFAYHVNDPER--YGVVEFDQKGTAV 158
Query: 272 QFAEKP 277
EKP
Sbjct: 159 SLEEKP 164
>pdb|1MP5|A Chain A, Y177f Variant Of S. Enterica Rmla
pdb|1MP5|B Chain B, Y177f Variant Of S. Enterica Rmla
pdb|1MP5|C Chain C, Y177f Variant Of S. Enterica Rmla
pdb|1MP5|D Chain D, Y177f Variant Of S. Enterica Rmla
Length = 292
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 83/186 (44%), Gaps = 24/186 (12%)
Query: 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNS 152
K IIL GG+GT+L+P+T+ + +P+ +I P+S + +GI I +++
Sbjct: 2 KTRKGIILAGGSGTRLYPVTMAVSQQLLPIYDK-PMIYYPLSTLMLAGIRDILIISTPQD 60
Query: 153 ASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNR 212
+ + G+G+ +G + Q + D + Q + E+
Sbjct: 61 TPRFQQL----LGDGSQWGLNL--------------QYKVQPSPDGLAQAFIIGEEFIGH 102
Query: 213 NIENVAILCGDHL-YRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIA 271
++ A++ GD++ Y D +++ V++++ T+ V + YG+V+ D G
Sbjct: 103 --DDCALVLGDNIFYGHDLPKLMEAAVNKESGATVFAYHVNDPER--YGVVEFDQAGTAV 158
Query: 272 QFAEKP 277
EKP
Sbjct: 159 SLEEKP 164
>pdb|1MP3|A Chain A, L89t Variant Of S. Enterica Rmla
pdb|1MP3|B Chain B, L89t Variant Of S. Enterica Rmla
Length = 292
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 82/186 (44%), Gaps = 24/186 (12%)
Query: 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNS 152
K IIL GG+GT+L+P+T+ + +P+ +I P+S + +GI I +++
Sbjct: 2 KTRKGIILAGGSGTRLYPVTMAVSQQLLPIYDK-PMIYYPLSTLMLAGIRDILIISTPQD 60
Query: 153 ASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNR 212
+ + G+G+ +G + Q + D Q + E+
Sbjct: 61 TPRFQQL----LGDGSQWGLNL--------------QYKVQPSPDGTAQAFIIGEEFIGH 102
Query: 213 NIENVAILCGDHL-YRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIA 271
++ A++ GD++ Y D +++ V++++ T+ V + YG+V+ D G
Sbjct: 103 --DDCALVLGDNIFYGHDLPKLMEAAVNKESGATVFAYHVNDPER--YGVVEFDQAGTAV 158
Query: 272 QFAEKP 277
EKP
Sbjct: 159 SLEEKP 164
>pdb|1G23|A Chain A, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Glucose-1-Phosphate Complex.
pdb|1G23|B Chain B, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Glucose-1-Phosphate Complex.
pdb|1G23|C Chain C, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Glucose-1-Phosphate Complex.
pdb|1G23|D Chain D, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Glucose-1-Phosphate Complex.
pdb|1G23|E Chain E, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Glucose-1-Phosphate Complex.
pdb|1G23|F Chain F, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Glucose-1-Phosphate Complex.
pdb|1G23|G Chain G, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Glucose-1-Phosphate Complex.
pdb|1G23|H Chain H, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Glucose-1-Phosphate Complex
Length = 293
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 80/182 (43%), Gaps = 24/182 (13%)
Query: 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLN 156
IIL GG+GT+L P TL + +PV I P+S +GI +I +++
Sbjct: 5 GIILAGGSGTRLHPATLAISKQLLPVYDK-PXIYYPLSTLXLAGIREILIISTPQDTPRF 63
Query: 157 RHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIEN 216
+ + G+G+N+G +++ A Q + D + Q + E ++
Sbjct: 64 QQL----LGDGSNWG---LDLQYAVQP-----------SPDGLAQAFLIGESFIGNDLS- 104
Query: 217 VAILCGDHLYR-MDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAE 275
A++ GD+LY D+ + + S R ++ V + YG+V+ D G+ E
Sbjct: 105 -ALVLGDNLYYGHDFHELLGSASQRQTGASVFAYHVLDPER--YGVVEFDQGGKAISLEE 161
Query: 276 KP 277
KP
Sbjct: 162 KP 163
>pdb|3PKP|A Chain A, Q83s Variant Of S. Enterica Rmla With Datp
pdb|3PKP|B Chain B, Q83s Variant Of S. Enterica Rmla With Datp
pdb|3PKP|C Chain C, Q83s Variant Of S. Enterica Rmla With Datp
pdb|3PKP|D Chain D, Q83s Variant Of S. Enterica Rmla With Datp
pdb|3PKP|I Chain I, Q83s Variant Of S. Enterica Rmla With Datp
pdb|3PKP|J Chain J, Q83s Variant Of S. Enterica Rmla With Datp
pdb|3PKP|K Chain K, Q83s Variant Of S. Enterica Rmla With Datp
pdb|3PKP|L Chain L, Q83s Variant Of S. Enterica Rmla With Datp
Length = 292
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 84/186 (45%), Gaps = 24/186 (12%)
Query: 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNS 152
K IIL GG+GT+L+P+T+ + +P+ +I P+S + +GI I +++
Sbjct: 2 KTRKGIILAGGSGTRLYPVTMAVSKQLLPIYDK-PMIYYPLSTLMLAGIRDILIISTPQD 60
Query: 153 ASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNR 212
+ + G+G+ +G L +P + D + Q + E+
Sbjct: 61 TPRFQQL----LGDGSQWGLN----LQYKVSP----------SPDGLAQAFIIGEEFIGH 102
Query: 213 NIENVAILCGDHL-YRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIA 271
++ A++ GD++ Y D +++ V++++ T+ V + YG+V+ D G
Sbjct: 103 --DDCALVLGDNIFYGHDLPKLMEAAVNKESGATVFAYHVNDPER--YGVVEFDQKGTAV 158
Query: 272 QFAEKP 277
EKP
Sbjct: 159 SLEEKP 164
>pdb|1H5S|D Chain D, Thymidylyltransferase Complexed With Tmp
Length = 293
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/182 (21%), Positives = 82/182 (45%), Gaps = 24/182 (13%)
Query: 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLN 156
IIL GG+GT+L+P+T+ + +P+ +I P+S + +GI I +++
Sbjct: 6 GIILAGGSGTRLYPVTMAVSKQLLPIYDK-PMIYYPLSTLMLAGIRDILIISTPQDTPRF 64
Query: 157 RHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIEN 216
+ + G+G+ +G + Q + D + Q + E+ ++
Sbjct: 65 QQL----LGDGSQWGLNL--------------QYKVQPSPDGLAQAFIIGEEFIGA--DD 104
Query: 217 VAILCGDHL-YRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAE 275
A++ GD++ Y D +++ V++++ T+ V + YG+V+ D G E
Sbjct: 105 CALVLGDNIFYGHDLPKLMEAAVNKESGATVFAYHVNDPER--YGVVEFDKNGTAISLEE 162
Query: 276 KP 277
KP
Sbjct: 163 KP 164
>pdb|1H5R|B Chain B, Thymidylyltransferase Complexed With Thimidine And
Glucose- 1-Phospate
pdb|1H5T|B Chain B, Thymidylyltransferase Complexed With
Thymidylyldiphosphate- Glucose
pdb|1H5S|B Chain B, Thymidylyltransferase Complexed With Tmp
Length = 293
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/182 (21%), Positives = 82/182 (45%), Gaps = 24/182 (13%)
Query: 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLN 156
IIL GG+GT+L+P+T+ + +P+ +I P+S + +GI I +++
Sbjct: 6 GIILAGGSGTRLYPVTMAVSKQLLPIYDK-PMIYYPLSTLMLAGIRDILIISTPQDTPRF 64
Query: 157 RHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIEN 216
+ + G+G+ +G + Q + D + Q + E+ ++
Sbjct: 65 QQL----LGDGSQWGLNL--------------QYKVQPSPDGLAQAFIIGEEFIGG--DD 104
Query: 217 VAILCGDHL-YRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAE 275
A++ GD++ Y D +++ V++++ T+ V + YG+V+ D G E
Sbjct: 105 CALVLGDNIFYGHDLPKLMEAAVNKESGATVFAYHVNDPER--YGVVEFDKNGTAISLEE 162
Query: 276 KP 277
KP
Sbjct: 163 KP 164
>pdb|1H5T|A Chain A, Thymidylyltransferase Complexed With
Thymidylyldiphosphate- Glucose
pdb|1H5R|A Chain A, Thymidylyltransferase Complexed With Thimidine And
Glucose- 1-Phospate
pdb|1H5R|C Chain C, Thymidylyltransferase Complexed With Thimidine And
Glucose- 1-Phospate
pdb|1H5R|D Chain D, Thymidylyltransferase Complexed With Thimidine And
Glucose- 1-Phospate
pdb|1H5T|C Chain C, Thymidylyltransferase Complexed With
Thymidylyldiphosphate- Glucose
pdb|1H5T|D Chain D, Thymidylyltransferase Complexed With
Thymidylyldiphosphate- Glucose
pdb|1H5S|C Chain C, Thymidylyltransferase Complexed With Tmp
Length = 293
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 40/182 (21%), Positives = 82/182 (45%), Gaps = 24/182 (13%)
Query: 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLN 156
IIL GG+GT+L+P+T+ + +P+ +I P+S + +GI I +++
Sbjct: 6 GIILAGGSGTRLYPVTMAVSKQLLPIYDK-PMIYYPLSTLMLAGIRDILIISTPQDTPRF 64
Query: 157 RHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIEN 216
+ + G+G+ +G + Q + D + Q + E+ ++
Sbjct: 65 QQL----LGDGSQWGLNL--------------QYKVQPSPDGLAQAFIIGEEFIGG--DD 104
Query: 217 VAILCGDHL-YRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAE 275
A++ GD++ Y D +++ V++++ T+ V + YG+V+ D G E
Sbjct: 105 CALVLGDNIFYGHDLPKLMEAAVNKESGATVFAYHVNDPER--YGVVEFDKNGTAISLEE 162
Query: 276 KP 277
KP
Sbjct: 163 KP 164
>pdb|1H5S|A Chain A, Thymidylyltransferase Complexed With Tmp
Length = 293
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 40/182 (21%), Positives = 82/182 (45%), Gaps = 24/182 (13%)
Query: 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLN 156
IIL GG+GT+L+P+T+ + +P+ +I P+S + +GI I +++
Sbjct: 6 GIILAGGSGTRLYPVTMAVSKQLLPIYDK-PMIYYPLSTLMLAGIRDILIISTPQDTPRF 64
Query: 157 RHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIEN 216
+ + G+G+ +G + Q + D + Q + E+ ++
Sbjct: 65 QQL----LGDGSQWGLNL--------------QYKVQPSPDGLAQAFIIGEEFIGG--DD 104
Query: 217 VAILCGDHL-YRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAE 275
A++ GD++ Y D +++ V++++ T+ V + YG+V+ D G E
Sbjct: 105 CALVLGDNIFYGHDLPKLMEAAVNKESGATVFAYHVNDPER--YGVVEFDKNGTAISLEE 162
Query: 276 KP 277
KP
Sbjct: 163 KP 164
>pdb|3PKQ|A Chain A, Q83d Variant Of S. Enterica Rmla With Dgtp
pdb|3PKQ|B Chain B, Q83d Variant Of S. Enterica Rmla With Dgtp
pdb|3PKQ|C Chain C, Q83d Variant Of S. Enterica Rmla With Dgtp
pdb|3PKQ|D Chain D, Q83d Variant Of S. Enterica Rmla With Dgtp
Length = 292
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 83/186 (44%), Gaps = 24/186 (12%)
Query: 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNS 152
K IIL GG+GT+L+P+T+ + +P+ +I P+S + +GI I +++
Sbjct: 2 KTRKGIILAGGSGTRLYPVTMAVSKQLLPIYDK-PMIYYPLSTLMLAGIRDILIISTPQD 60
Query: 153 ASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNR 212
+ + G+G+ +G L P + D + Q + E+
Sbjct: 61 TPRFQQL----LGDGSQWGLN----LQYKVDP----------SPDGLAQAFIIGEEFIGH 102
Query: 213 NIENVAILCGDHL-YRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIA 271
++ A++ GD++ Y D +++ V++++ T+ V + YG+V+ D G
Sbjct: 103 --DDCALVLGDNIFYGHDLPKLMEAAVNKESGATVFAYHVNDPER--YGVVEFDQKGTAV 158
Query: 272 QFAEKP 277
EKP
Sbjct: 159 SLEEKP 164
>pdb|3HL3|A Chain A, 2.76 Angstrom Crystal Structure Of A Putative
Glucose-1-Phosphate Thymidylyltransferase From Bacillus
Anthracis In Complex With A Sucrose.
pdb|4ECM|A Chain A, 2.3 Angstrom Crystal Structure Of A Glucose-1-Phosphate
Thymidylyltransferase From Bacillus Anthracis In Complex
With Thymidine-5-Diphospho-Alpha-D-Glucose And
Pyrophosphate
Length = 269
Score = 36.2 bits (82), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 39/185 (21%), Positives = 75/185 (40%), Gaps = 28/185 (15%)
Query: 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSAS 154
+ IIL GG G++L+P+T +PV G Y +I + I I ++T
Sbjct: 25 MKGIILAGGTGSRLYPITKVTNKHLLPV-GRYPMIYHAVYKLKQCDITDIMIITG----- 78
Query: 155 LNRHIAR--TYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNR 212
H+ ++ G+G FG F + Q A + Q + ED
Sbjct: 79 -KEHMGDVVSFLGSGQEFGVSFTYRV--------------QDKAGGIAQALGLCEDFVGN 123
Query: 213 NIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQ 272
+ + ++ GD+++ D +++ ++ + +V + +G+ I N +I +
Sbjct: 124 --DRMVVILGDNIFSDDIRPYVEEFTNQKEGAKVLLQSVDDPER--FGVANIQNR-KIIE 178
Query: 273 FAEKP 277
EKP
Sbjct: 179 IEEKP 183
>pdb|1MC3|A Chain A, Crystal Structure Of Rffh
pdb|1MC3|B Chain B, Crystal Structure Of Rffh
Length = 296
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
Query: 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLN 156
IIL GG+GT+L P+T + +P+ I P+S +GI +I ++T +
Sbjct: 6 GIILAGGSGTRLHPITRGVSKQLLPIYDK-PXIYYPLSVLXLAGIREILIIT----TPED 60
Query: 157 RHIARTYFGNGTNFG 171
+ + G+G+ FG
Sbjct: 61 KGYFQRLLGDGSEFG 75
>pdb|2E3D|A Chain A, Crystal Structure Of E. Coli Glucose-1-Phosphate
Uridylyltransferase
pdb|2E3D|B Chain B, Crystal Structure Of E. Coli Glucose-1-Phosphate
Uridylyltransferase
pdb|2E3D|C Chain C, Crystal Structure Of E. Coli Glucose-1-Phosphate
Uridylyltransferase
pdb|2E3D|D Chain D, Crystal Structure Of E. Coli Glucose-1-Phosphate
Uridylyltransferase
Length = 302
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 11/72 (15%)
Query: 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPM-----SNCINSGINKIFVLTQFN 151
A+I G GT++ P AT A+P L+D P+ + CI +GI +I ++T +
Sbjct: 11 AVIPVAGLGTRMLP-----ATKAIP-KEMLPLVDKPLIQYVVNECIAAGITEIVLVTHSS 64
Query: 152 SASLNRHIARTY 163
S+ H ++
Sbjct: 65 KNSIENHFDTSF 76
>pdb|1JYL|A Chain A, Catalytic Mechanism Of Ctp:phosphocholine
Cytidylytransferase From Streptococcus Pneumoniae (Licc)
pdb|1JYL|B Chain B, Catalytic Mechanism Of Ctp:phosphocholine
Cytidylytransferase From Streptococcus Pneumoniae (Licc)
pdb|1JYL|C Chain C, Catalytic Mechanism Of Ctp:phosphocholine
Cytidylytransferase From Streptococcus Pneumoniae (Licc)
pdb|1JYL|D Chain D, Catalytic Mechanism Of Ctp:phosphocholine
Cytidylytransferase From Streptococcus Pneumoniae (Licc)
Length = 254
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYR-LIDIPMSNCINSGINKIFVLTQF 150
V AIIL G GT+L PLT TP V + LI+ + GIN I ++ +
Sbjct: 26 VKAIILAAGLGTRLRPLT--ENTPKALVQVNQKPLIEYQIEFLKEKGINDIIIIVGY 80
>pdb|1JYK|A Chain A, Catalytic Mechanism Of Ctp:phosphocholine
Cytidylytransferase From Streptococcus Pneumoniae (Licc)
Length = 254
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYR-LIDIPMSNCINSGINKIFVLTQF 150
V AIIL G GT+L PLT TP V + LI+ + GIN I ++ +
Sbjct: 26 VKAIILAAGLGTRLRPLT--ENTPKALVQVNQKPLIEYQIEFLKEKGINDIIIIVGY 80
>pdb|3VOC|A Chain A, Crystal Structure Of The Catalytic Domain Of Beta-amylase
From Paenibacillus Polymyxa
Length = 419
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 81/205 (39%), Gaps = 32/205 (15%)
Query: 95 VAAIILGGGAGTKL-FPLTLRAATPAVPVAGCYRLIDIPMSNCINSGIN-KIFVLTQFNS 152
+ I L GG +L +P AA + P G ++ N + +N K L + N+
Sbjct: 151 IPKIYLSGGPSGELRYPSYYPAAGWSYPGRGKFQAYTETAKNAFRTAMNDKYGSLDKINA 210
Query: 153 ASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNR 212
A + + + T+ GDGF G+ +W+Q + + V A ++
Sbjct: 211 AWGTKLTSLSQINPPTD-GDGFYTNGGYNSAYGKDFLSWYQ---SVLEKHLGVIGAAAHK 266
Query: 213 NIENV------AILCGDHLYRM----------------DYMDFIQSHVDRDADITISCAA 250
N ++V A + G H ++M DY IQ D D D+T +C
Sbjct: 267 NFDSVFGVRIGAKISGLH-WQMNNPAMPHGTEQAGGYYDYNRLIQKFKDADLDLTFTCLE 325
Query: 251 VGES-RASDYGL--VKIDNMGRIAQ 272
+ +S A +Y L +D + IA
Sbjct: 326 MSDSGTAPNYSLPSTLVDTVSSIAN 350
>pdb|2OZP|A Chain A, Crystal Structure Of N-Acetyl-Gamma-Glutamyl-Phosphate
Reductase (Ttha1904) From Thermus Thermophilus
Length = 345
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 379 HFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLRE 417
HF P T+ +F+PP K++ I + HG F RE
Sbjct: 46 HFVHPNLRGRTNLKFVPPEKLEPADILVLALPHGVFARE 84
>pdb|1WQ6|A Chain A, The Tetramer Structure Of The Nervy Homolgy Two (Nhr2)
Domain Of Aml1- Eto Is Critical For Aml1-Eto's Activity
pdb|1WQ6|B Chain B, The Tetramer Structure Of The Nervy Homolgy Two (Nhr2)
Domain Of Aml1- Eto Is Critical For Aml1-Eto's Activity
Length = 72
Score = 30.0 bits (66), Expect = 3.4, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 475 NCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIR 509
NCI D K + + ++ + QEADR EL ++IR
Sbjct: 31 NCIXDXVEKTRRSLTVLRR--CQEADREELNYWIR 63
>pdb|1BCM|A Chain A, Bacteriophage Mu Transposase Core Domain With 2 Monomers
Per Asymmetric Unit
pdb|1BCM|B Chain B, Bacteriophage Mu Transposase Core Domain With 2 Monomers
Per Asymmetric Unit
pdb|1BCO|A Chain A, Bacteriophage Mu Transposase Core Domain
Length = 327
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
Query: 191 WFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHL--YRMDYMDFIQSH-VDRDADITI 246
WF G D +R TW ++D K R I +++ R+ +MD + + + D ITI
Sbjct: 32 WFNG--DVIRPKTWFWQDVKTRKILGWRCDVSENIDSIRLSFMDVVTRYGIPEDFHITI 88
>pdb|4FCY|A Chain A, Crystal Structure Of The Bacteriophage Mu Transpososome
pdb|4FCY|B Chain B, Crystal Structure Of The Bacteriophage Mu Transpososome
Length = 529
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
Query: 191 WFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHL--YRMDYMDFIQSH-VDRDADITI 246
WF G D +R TW ++D K R I +++ R+ +MD + + + D ITI
Sbjct: 203 WFNG--DVIRPKTWFWQDVKTRKILGWRCDVSENIDSIRLSFMDVVTRYGIPEDFHITI 259
>pdb|2QTZ|A Chain A, Crystal Structure Of The Nadp+-Bound Fad-Containing
Fnr-Like Module Of Human Methionine Synthase Reductase
Length = 539
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 8/87 (9%)
Query: 39 SNDGCTKQLKKSLKAEKRDEKVKPGVAYAVMTSKHPNEVMTLAPPRLERRRVDPKNVAAI 98
+ND L L D +PG A++V+ +EV +L L+R +++ K +
Sbjct: 127 TNDAIKTTLLVELDISNTDFSYQPGDAFSVICPNSDSEVQSL----LQRLQLEDKREHXV 182
Query: 99 ILGGGAGTKLFPLTLRAATPAVPVAGC 125
+L A TK TL P AGC
Sbjct: 183 LLKIKADTKKKGATLPQHIP----AGC 205
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,990,490
Number of Sequences: 62578
Number of extensions: 691656
Number of successful extensions: 1485
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1437
Number of HSP's gapped (non-prelim): 49
length of query: 527
length of database: 14,973,337
effective HSP length: 103
effective length of query: 424
effective length of database: 8,527,803
effective search space: 3615788472
effective search space used: 3615788472
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)