Query 009720
Match_columns 527
No_of_seqs 273 out of 2643
Neff 7.2
Searched_HMMs 46136
Date Thu Mar 28 16:31:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009720.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009720hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1322 GDP-mannose pyrophosph 100.0 2E-76 4.3E-81 581.6 32.3 367 86-522 2-371 (371)
2 COG0448 GlgC ADP-glucose pyrop 100.0 2.8E-75 6E-80 593.4 35.7 386 91-526 2-392 (393)
3 PLN02241 glucose-1-phosphate a 100.0 3.3E-67 7.1E-72 562.2 47.3 434 92-527 1-436 (436)
4 PRK02862 glgC glucose-1-phosph 100.0 3.6E-64 7.9E-69 537.5 45.9 428 92-527 1-429 (429)
5 PRK00844 glgC glucose-1-phosph 100.0 1.1E-57 2.4E-62 484.7 43.1 385 91-521 2-407 (407)
6 PRK05293 glgC glucose-1-phosph 100.0 7.2E-57 1.6E-61 474.4 42.1 373 92-527 1-379 (380)
7 PRK00725 glgC glucose-1-phosph 100.0 1.5E-55 3.2E-60 470.7 44.0 388 91-523 12-421 (425)
8 TIGR02091 glgC glucose-1-phosp 100.0 5.8E-51 1.3E-55 426.5 39.1 356 97-492 1-361 (361)
9 TIGR02092 glgD glucose-1-phosp 100.0 3.7E-51 8.1E-56 429.4 36.1 350 93-493 1-356 (369)
10 COG1208 GCD1 Nucleoside-diphos 100.0 8.4E-51 1.8E-55 423.9 37.7 352 94-527 1-357 (358)
11 TIGR01208 rmlA_long glucose-1- 100.0 5.4E-46 1.2E-50 388.1 38.1 327 96-492 1-339 (353)
12 PRK14355 glmU bifunctional N-a 100.0 1E-42 2.2E-47 375.7 37.1 390 92-527 1-430 (459)
13 PRK14352 glmU bifunctional N-a 100.0 9.6E-43 2.1E-47 378.0 36.1 388 92-527 2-432 (482)
14 KOG1460 GDP-mannose pyrophosph 100.0 9.2E-44 2E-48 345.1 22.0 332 94-493 2-358 (407)
15 PRK14359 glmU bifunctional N-a 100.0 4.8E-41 1E-45 359.4 37.3 372 94-527 2-400 (430)
16 PRK14358 glmU bifunctional N-a 100.0 3.8E-41 8.3E-46 365.1 35.1 386 93-527 6-426 (481)
17 PRK09451 glmU bifunctional N-a 100.0 1.3E-41 2.9E-46 366.6 31.0 382 91-527 2-427 (456)
18 TIGR01173 glmU UDP-N-acetylglu 100.0 3.1E-41 6.7E-46 362.7 33.0 379 95-527 1-423 (451)
19 COG1207 GlmU N-acetylglucosami 100.0 6E-41 1.3E-45 341.7 30.6 386 94-527 2-430 (460)
20 PRK14353 glmU bifunctional N-a 100.0 3.3E-40 7.1E-45 354.7 35.6 371 90-527 1-413 (446)
21 PRK14356 glmU bifunctional N-a 100.0 1.2E-39 2.7E-44 351.2 36.0 382 94-527 5-425 (456)
22 PRK14354 glmU bifunctional N-a 100.0 2.3E-39 5E-44 349.2 32.6 382 94-527 2-426 (458)
23 PRK14357 glmU bifunctional N-a 100.0 4.2E-39 9.1E-44 346.3 32.8 375 95-527 1-416 (448)
24 COG1209 RfbA dTDP-glucose pyro 100.0 1.7E-39 3.6E-44 315.4 22.8 279 95-434 1-284 (286)
25 PRK14360 glmU bifunctional N-a 100.0 3E-38 6.6E-43 339.8 34.0 380 95-527 2-423 (450)
26 TIGR01105 galF UTP-glucose-1-p 100.0 2E-38 4.4E-43 322.7 27.5 243 92-372 1-277 (297)
27 KOG1461 Translation initiation 100.0 2.1E-37 4.6E-42 326.7 32.8 382 92-527 22-423 (673)
28 PF00483 NTP_transferase: Nucl 100.0 4.2E-38 9.2E-43 311.5 26.0 241 96-373 1-247 (248)
29 PRK10122 GalU regulator GalF; 100.0 2.8E-37 6.1E-42 314.7 27.4 243 92-372 1-277 (297)
30 cd06428 M1P_guanylylT_A_like_N 100.0 7.1E-37 1.5E-41 305.6 26.2 235 97-371 1-257 (257)
31 cd06425 M1P_guanylylT_B_like_N 100.0 1.7E-36 3.8E-41 298.3 27.2 232 95-372 1-233 (233)
32 PRK15480 glucose-1-phosphate t 100.0 6.1E-36 1.3E-40 303.8 27.4 235 92-372 1-241 (292)
33 KOG1462 Translation initiation 100.0 2.4E-36 5.3E-41 303.2 21.5 348 92-492 7-402 (433)
34 cd02538 G1P_TT_short G1P_TT_sh 100.0 2.6E-35 5.6E-40 291.2 26.4 232 95-372 1-238 (240)
35 TIGR01207 rmlA glucose-1-phosp 100.0 3.1E-35 6.7E-40 298.1 25.8 231 96-372 1-237 (286)
36 cd02541 UGPase_prokaryotic Pro 100.0 3.9E-35 8.4E-40 294.5 25.7 244 95-372 1-265 (267)
37 TIGR02623 G1P_cyt_trans glucos 100.0 7.7E-35 1.7E-39 290.8 27.0 233 96-375 1-248 (254)
38 TIGR01099 galU UTP-glucose-1-p 100.0 5.5E-35 1.2E-39 292.2 23.7 239 95-367 1-260 (260)
39 PRK13389 UTP--glucose-1-phosph 100.0 2.9E-34 6.3E-39 293.1 27.7 245 91-372 5-280 (302)
40 cd06422 NTP_transferase_like_1 100.0 2.5E-34 5.5E-39 280.4 22.4 219 96-367 1-221 (221)
41 cd02524 G1P_cytidylyltransfera 100.0 2.1E-33 4.6E-38 280.0 27.3 242 97-374 1-248 (253)
42 cd04189 G1P_TT_long G1P_TT_lon 100.0 2.7E-33 5.8E-38 275.6 26.6 232 95-373 1-235 (236)
43 cd06915 NTP_transferase_WcbM_l 100.0 1.4E-32 3E-37 266.9 23.8 223 97-368 1-223 (223)
44 cd04181 NTP_transferase NTP_tr 100.0 3.9E-32 8.4E-37 262.9 24.6 217 97-359 1-217 (217)
45 cd06426 NTP_transferase_like_2 100.0 1.3E-31 2.8E-36 260.6 24.5 219 97-368 1-220 (220)
46 COG1210 GalU UDP-glucose pyrop 100.0 4.4E-32 9.6E-37 263.8 20.0 250 92-376 2-274 (291)
47 cd02523 PC_cytidylyltransferas 100.0 1.1E-29 2.4E-34 249.1 20.6 222 97-368 1-229 (229)
48 cd02508 ADP_Glucose_PP ADP-glu 100.0 2.4E-29 5.3E-34 242.0 22.1 198 97-358 1-200 (200)
49 cd04183 GT2_BcE_like GT2_BcbE_ 100.0 3.4E-29 7.4E-34 245.7 23.1 222 97-364 1-230 (231)
50 cd04197 eIF-2B_epsilon_N The N 100.0 1.1E-29 2.3E-34 247.7 18.1 204 95-318 1-217 (217)
51 cd02509 GDP-M1P_Guanylyltransf 100.0 4.7E-27 1E-31 237.2 19.6 233 95-363 1-273 (274)
52 cd02540 GT2_GlmU_N_bac N-termi 99.9 6.3E-26 1.4E-30 221.8 23.2 221 97-364 1-229 (229)
53 cd02507 eIF-2B_gamma_N_like Th 99.9 4.4E-26 9.6E-31 222.2 16.4 204 95-318 1-216 (216)
54 TIGR01479 GMP_PMI mannose-1-ph 99.9 8.5E-24 1.8E-28 228.3 22.9 239 95-367 1-280 (468)
55 cd04198 eIF-2B_gamma_N The N-t 99.9 2E-24 4.4E-29 210.2 15.1 201 95-318 1-214 (214)
56 PRK05450 3-deoxy-manno-octulos 99.9 1.1E-22 2.3E-27 201.5 23.1 234 94-371 2-244 (245)
57 cd02517 CMP-KDO-Synthetase CMP 99.9 1.6E-22 3.5E-27 199.5 22.7 226 95-369 2-238 (239)
58 COG1213 Predicted sugar nucleo 99.9 2.2E-22 4.7E-27 193.0 18.4 223 92-373 1-230 (239)
59 PRK13368 3-deoxy-manno-octulos 99.9 8.6E-21 1.9E-25 187.1 21.7 225 94-370 2-237 (238)
60 PRK15460 cpsB mannose-1-phosph 99.8 2.1E-19 4.6E-24 193.1 20.1 241 95-367 6-289 (478)
61 COG0836 {ManC} Mannose-1-phosp 99.8 4.2E-18 9E-23 169.9 19.4 243 94-369 1-283 (333)
62 COG4750 LicC CTP:phosphocholin 99.8 5.7E-18 1.2E-22 156.4 16.3 219 95-372 1-226 (231)
63 PLN02917 CMP-KDO synthetase 99.7 2E-16 4.3E-21 161.2 23.1 235 93-374 46-290 (293)
64 TIGR00453 ispD 2-C-methyl-D-er 99.6 2.3E-14 4.9E-19 139.4 18.2 210 97-370 2-216 (217)
65 PRK00155 ispD 2-C-methyl-D-ery 99.6 3.6E-14 7.7E-19 139.2 18.5 217 93-372 2-223 (227)
66 TIGR00466 kdsB 3-deoxy-D-manno 99.6 9.8E-14 2.1E-18 137.4 20.9 228 97-364 2-237 (238)
67 cd02516 CDP-ME_synthetase CDP- 99.6 4.4E-14 9.5E-19 137.2 17.1 212 96-366 2-217 (218)
68 PRK09382 ispDF bifunctional 2- 99.5 2.8E-13 6E-18 142.4 20.0 208 92-373 3-214 (378)
69 cd02513 CMP-NeuAc_Synthase CMP 99.5 4.5E-13 9.8E-18 130.3 19.7 216 94-369 1-221 (223)
70 TIGR03532 DapD_Ac 2,3,4,5-tetr 99.5 1.6E-14 3.5E-19 142.1 9.2 134 331-493 29-178 (231)
71 TIGR03310 matur_ygfJ molybdenu 99.5 2.9E-13 6.2E-18 128.2 16.5 119 97-244 2-122 (188)
72 TIGR00454 conserved hypothetic 99.5 9.1E-14 2E-18 132.2 12.8 123 95-248 1-125 (183)
73 PF12804 NTP_transf_3: MobA-li 99.5 1E-13 2.2E-18 128.1 12.2 120 97-248 1-122 (160)
74 cd04651 LbH_G1P_AT_C Glucose-1 99.5 1.9E-13 4.2E-18 118.0 12.7 103 396-521 1-104 (104)
75 PRK13385 2-C-methyl-D-erythrit 99.5 1.1E-12 2.3E-17 129.2 18.5 218 95-373 3-225 (230)
76 COG2266 GTP:adenosylcobinamide 99.4 2.8E-12 6E-17 118.2 15.9 110 95-238 1-112 (177)
77 cd04182 GT_2_like_f GT_2_like_ 99.4 1E-12 2.2E-17 123.7 12.6 120 95-243 1-122 (186)
78 cd02503 MobA MobA catalyzes th 99.4 2.8E-12 6.2E-17 120.9 14.9 107 95-237 1-109 (181)
79 cd05636 LbH_G1P_TT_C_like Puta 99.4 1.6E-12 3.5E-17 121.2 12.6 121 387-527 14-162 (163)
80 PLN02728 2-C-methyl-D-erythrit 99.4 2.3E-11 5.1E-16 121.3 20.9 224 87-373 17-246 (252)
81 PRK00317 mobA molybdopterin-gu 99.4 1.1E-11 2.4E-16 118.4 17.7 114 92-239 1-116 (193)
82 COG2068 Uncharacterized MobA-r 99.4 5.6E-11 1.2E-15 112.5 18.3 122 91-240 2-125 (199)
83 COG1212 KdsB CMP-2-keto-3-deox 99.3 9.1E-11 2E-15 112.0 19.1 235 94-373 3-244 (247)
84 TIGR02665 molyb_mobA molybdopt 99.3 3E-11 6.5E-16 114.5 16.1 117 95-243 1-119 (186)
85 TIGR03584 PseF pseudaminic aci 99.3 2.5E-10 5.5E-15 111.9 21.3 214 97-370 2-219 (222)
86 PRK00560 molybdopterin-guanine 99.3 1.2E-10 2.6E-15 111.9 17.9 107 89-233 3-112 (196)
87 COG1044 LpxD UDP-3-O-[3-hydrox 99.3 4.9E-11 1.1E-15 120.7 15.3 51 476-527 237-287 (338)
88 cd03353 LbH_GlmU_C N-acetyl-gl 99.3 1.5E-11 3.2E-16 117.7 11.1 132 392-527 35-177 (193)
89 PRK02726 molybdopterin-guanine 99.3 2.7E-10 5.8E-15 109.9 18.5 112 93-238 6-119 (200)
90 TIGR01853 lipid_A_lpxD UDP-3-O 99.3 7.4E-11 1.6E-15 121.9 15.3 45 355-399 67-112 (324)
91 PRK14489 putative bifunctional 99.2 2.9E-10 6.4E-15 119.6 17.9 121 91-243 2-124 (366)
92 cd04652 LbH_eIF2B_gamma_C eIF- 99.2 7.3E-11 1.6E-15 97.0 9.5 78 409-525 2-80 (81)
93 TIGR01852 lipid_A_lpxA acyl-[a 99.2 9.6E-11 2.1E-15 117.2 12.0 88 422-527 76-170 (254)
94 cd03353 LbH_GlmU_C N-acetyl-gl 99.2 9.8E-11 2.1E-15 112.1 11.5 80 393-491 18-101 (193)
95 cd03351 LbH_UDP-GlcNAc_AT UDP- 99.2 9.4E-11 2E-15 117.3 11.8 62 465-527 103-171 (254)
96 cd03351 LbH_UDP-GlcNAc_AT UDP- 99.2 9.7E-11 2.1E-15 117.2 11.7 53 386-438 7-63 (254)
97 COG0663 PaaY Carbonic anhydras 99.2 1.5E-10 3.2E-15 107.5 11.5 91 390-499 17-113 (176)
98 PRK12461 UDP-N-acetylglucosami 99.2 1.9E-10 4.1E-15 115.0 13.2 62 465-526 102-169 (255)
99 PRK00892 lpxD UDP-3-O-[3-hydro 99.2 2.6E-10 5.7E-15 119.0 14.9 51 476-526 238-293 (343)
100 PRK05289 UDP-N-acetylglucosami 99.2 1.1E-10 2.3E-15 117.4 11.4 63 465-527 106-174 (262)
101 PF01128 IspD: 2-C-methyl-D-er 99.2 2.4E-09 5.1E-14 104.7 20.0 214 95-371 1-219 (221)
102 PRK14358 glmU bifunctional N-a 99.2 6.7E-11 1.5E-15 128.9 9.9 67 385-451 283-352 (481)
103 TIGR02287 PaaY phenylacetic ac 99.2 2.1E-10 4.6E-15 109.8 11.5 94 406-525 26-129 (192)
104 PRK14490 putative bifunctional 99.2 1E-09 2.2E-14 115.8 17.4 114 88-236 168-283 (369)
105 cd04745 LbH_paaY_like paaY-lik 99.2 3.6E-10 7.9E-15 104.5 12.4 87 406-511 18-114 (155)
106 PLN02296 carbonate dehydratase 99.2 1.6E-10 3.4E-15 116.1 10.5 119 381-526 49-180 (269)
107 TIGR03202 pucB xanthine dehydr 99.1 5.2E-10 1.1E-14 106.6 13.4 122 96-241 2-125 (190)
108 cd03356 LbH_G1P_AT_C_like Left 99.1 2.9E-10 6.2E-15 92.7 9.7 66 409-493 2-68 (79)
109 PRK13627 carnitine operon prot 99.1 5.3E-10 1.1E-14 107.4 12.4 89 406-508 28-121 (196)
110 cd02518 GT2_SpsF SpsF is a gly 99.1 2.7E-09 5.9E-14 105.0 17.8 115 97-245 2-121 (233)
111 PRK14356 glmU bifunctional N-a 99.1 2E-10 4.4E-15 124.1 10.3 85 406-493 321-416 (456)
112 cd04652 LbH_eIF2B_gamma_C eIF- 99.1 4.1E-10 8.9E-15 92.5 9.4 76 394-488 3-80 (81)
113 TIGR01853 lipid_A_lpxD UDP-3-O 99.1 3.7E-10 8.1E-15 116.7 11.1 53 475-527 229-286 (324)
114 COG1207 GlmU N-acetylglucosami 99.1 2.3E-10 4.9E-15 118.4 9.3 99 406-526 286-386 (460)
115 cd04193 UDPGlcNAc_PPase UDPGlc 99.1 3.4E-09 7.3E-14 109.4 17.7 217 92-324 13-257 (323)
116 TIGR03308 phn_thr-fam phosphon 99.1 4.7E-10 1E-14 108.5 10.3 27 465-491 43-69 (204)
117 TIGR01173 glmU UDP-N-acetylglu 99.1 4E-10 8.7E-15 121.4 10.9 44 402-445 274-319 (451)
118 cd04646 LbH_Dynactin_6 Dynacti 99.1 1.3E-09 2.7E-14 102.0 12.7 98 406-511 17-119 (164)
119 COG1044 LpxD UDP-3-O-[3-hydrox 99.1 6E-10 1.3E-14 112.8 11.2 50 475-527 202-251 (338)
120 cd05636 LbH_G1P_TT_C_like Puta 99.1 9.6E-10 2.1E-14 102.4 11.5 92 389-508 10-102 (163)
121 cd05787 LbH_eIF2B_epsilon eIF- 99.1 6.9E-10 1.5E-14 90.1 9.2 66 409-493 2-68 (79)
122 PRK11830 dapD 2,3,4,5-tetrahyd 99.1 6.9E-10 1.5E-14 111.1 10.9 33 476-508 177-209 (272)
123 COG0746 MobA Molybdopterin-gua 99.1 3.9E-09 8.6E-14 101.0 15.4 113 92-241 2-116 (192)
124 COG1211 IspD 4-diphosphocytidy 99.1 3E-08 6.4E-13 97.0 21.2 223 92-373 2-228 (230)
125 PLN02472 uncharacterized prote 99.0 7.1E-10 1.5E-14 110.0 9.3 124 386-525 61-186 (246)
126 PRK05289 UDP-N-acetylglucosami 99.0 1.4E-09 3E-14 109.4 11.2 139 381-526 5-155 (262)
127 cd04651 LbH_G1P_AT_C Glucose-1 99.0 1.5E-09 3.2E-14 93.7 9.9 70 418-508 8-77 (104)
128 PRK12461 UDP-N-acetylglucosami 99.0 1.5E-09 3.3E-14 108.5 11.4 139 382-526 3-151 (255)
129 PRK14357 glmU bifunctional N-a 99.0 1.1E-09 2.5E-14 118.0 10.6 66 406-491 273-340 (448)
130 cd04645 LbH_gamma_CA_like Gamm 99.0 5.7E-09 1.2E-13 96.3 13.6 88 406-511 17-113 (153)
131 cd04650 LbH_FBP Ferripyochelin 99.0 6E-09 1.3E-13 96.4 13.5 88 406-511 18-114 (154)
132 PRK09451 glmU bifunctional N-a 99.0 1.2E-09 2.6E-14 118.2 10.3 80 393-491 268-351 (456)
133 PRK00892 lpxD UDP-3-O-[3-hydro 99.0 1.7E-09 3.8E-14 112.8 11.0 61 465-526 210-275 (343)
134 cd05824 LbH_M1P_guanylylT_C Ma 99.0 2.9E-09 6.2E-14 87.2 9.6 64 407-493 6-69 (80)
135 cd03352 LbH_LpxD UDP-3-O-acyl- 99.0 4.7E-09 1E-13 101.3 12.8 55 383-437 12-70 (205)
136 cd04180 UGPase_euk_like Eukary 99.0 4E-08 8.6E-13 99.0 19.9 214 95-323 1-241 (266)
137 TIGR01852 lipid_A_lpxA acyl-[a 99.0 3.8E-09 8.2E-14 105.7 12.4 101 406-525 28-150 (254)
138 TIGR00965 dapD 2,3,4,5-tetrahy 99.0 2.6E-09 5.6E-14 106.2 10.9 33 476-508 174-206 (269)
139 KOG1461 Translation initiation 99.0 8.1E-10 1.7E-14 118.6 7.3 94 384-496 327-423 (673)
140 cd00710 LbH_gamma_CA Gamma car 99.0 3.7E-09 8.1E-14 99.1 10.7 101 406-527 20-131 (167)
141 PRK14500 putative bifunctional 98.9 2.1E-08 4.6E-13 104.4 16.0 109 94-237 160-270 (346)
142 PRK14354 glmU bifunctional N-a 98.9 2.9E-09 6.2E-14 115.2 9.8 66 406-491 283-350 (458)
143 cd03360 LbH_AT_putative Putati 98.9 1.9E-09 4.1E-14 101.8 7.3 28 465-492 139-167 (197)
144 PLN02474 UTP--glucose-1-phosph 98.9 5.3E-07 1.2E-11 96.6 26.5 350 92-482 77-467 (469)
145 PRK14355 glmU bifunctional N-a 98.9 4.6E-09 1E-13 113.8 11.0 76 406-504 274-349 (459)
146 cd04745 LbH_paaY_like paaY-lik 98.9 7.7E-09 1.7E-13 95.7 10.8 98 406-527 6-111 (155)
147 cd03356 LbH_G1P_AT_C_like Left 98.9 7.2E-09 1.6E-13 84.3 9.2 74 394-486 3-79 (79)
148 COG1043 LpxA Acyl-[acyl carrie 98.9 4.9E-09 1.1E-13 101.0 9.0 62 465-527 107-169 (260)
149 PRK14360 glmU bifunctional N-a 98.9 8.1E-09 1.8E-13 111.4 10.9 80 406-506 280-361 (450)
150 PRK14352 glmU bifunctional N-a 98.9 7.5E-09 1.6E-13 112.9 10.7 39 406-445 289-328 (482)
151 KOG1462 Translation initiation 98.9 5E-09 1.1E-13 106.9 8.2 90 385-493 329-420 (433)
152 PLN02296 carbonate dehydratase 98.9 1.2E-08 2.5E-13 102.6 10.7 85 423-527 71-169 (269)
153 cd03358 LbH_WxcM_N_like WcxM-l 98.9 9.5E-09 2.1E-13 90.1 8.8 81 406-506 16-98 (119)
154 TIGR03570 NeuD_NnaD sugar O-ac 98.9 3.4E-08 7.5E-13 94.1 13.4 21 353-373 61-81 (201)
155 TIGR02287 PaaY phenylacetic ac 98.8 1.8E-08 3.8E-13 96.6 10.3 97 407-527 15-119 (192)
156 cd03350 LbH_THP_succinylT 2,3, 98.8 2.6E-08 5.6E-13 90.5 10.8 33 465-497 82-115 (139)
157 cd04646 LbH_Dynactin_6 Dynacti 98.8 2.1E-08 4.6E-13 93.7 9.7 85 422-526 17-115 (164)
158 TIGR03308 phn_thr-fam phosphon 98.8 3.3E-08 7.2E-13 95.7 11.0 47 392-438 21-69 (204)
159 cd03359 LbH_Dynactin_5 Dynacti 98.8 4E-08 8.7E-13 91.5 10.9 99 406-511 27-125 (161)
160 cd03352 LbH_LpxD UDP-3-O-acyl- 98.8 5.4E-08 1.2E-12 93.9 11.9 140 382-525 5-163 (205)
161 cd05787 LbH_eIF2B_epsilon eIF- 98.8 4E-08 8.7E-13 79.7 9.0 74 394-486 3-79 (79)
162 cd04645 LbH_gamma_CA_like Gamm 98.8 4.2E-08 9.2E-13 90.4 10.2 97 406-526 5-109 (153)
163 TIGR00965 dapD 2,3,4,5-tetrahy 98.8 6E-08 1.3E-12 96.6 11.8 22 423-444 142-163 (269)
164 PLN02472 uncharacterized prote 98.8 3.8E-08 8.3E-13 97.7 10.4 98 406-527 65-176 (246)
165 cd00710 LbH_gamma_CA Gamma car 98.8 5.8E-08 1.2E-12 91.0 10.8 27 465-491 89-115 (167)
166 cd04650 LbH_FBP Ferripyochelin 98.7 6.4E-08 1.4E-12 89.5 10.7 97 406-526 6-110 (154)
167 PTZ00339 UDP-N-acetylglucosami 98.7 8.3E-07 1.8E-11 95.9 20.6 215 93-323 105-351 (482)
168 cd05824 LbH_M1P_guanylylT_C Ma 98.7 6.6E-08 1.4E-12 79.1 9.4 73 395-486 4-80 (80)
169 cd03350 LbH_THP_succinylT 2,3, 98.7 8.2E-08 1.8E-12 87.1 10.4 40 465-504 76-116 (139)
170 PRK14353 glmU bifunctional N-a 98.7 5.5E-08 1.2E-12 104.9 10.6 115 393-526 271-394 (446)
171 PRK14359 glmU bifunctional N-a 98.7 7E-08 1.5E-12 103.5 11.3 106 393-513 285-399 (430)
172 PRK11830 dapD 2,3,4,5-tetrahyd 98.7 1.3E-07 2.8E-12 94.9 12.0 22 423-444 145-166 (272)
173 cd05635 LbH_unknown Uncharacte 98.7 8.6E-08 1.9E-12 82.3 8.5 67 406-493 29-97 (101)
174 COG1043 LpxA Acyl-[acyl carrie 98.6 1.6E-07 3.6E-12 90.6 9.9 29 483-511 108-136 (260)
175 COG1083 NeuA CMP-N-acetylneura 98.6 1.6E-06 3.6E-11 82.6 15.8 219 93-373 2-224 (228)
176 TIGR03532 DapD_Ac 2,3,4,5-tetr 98.6 1.3E-07 2.7E-12 93.4 8.6 73 406-494 116-191 (231)
177 cd04649 LbH_THP_succinylT_puta 98.6 4.8E-07 1E-11 82.1 10.7 28 465-493 80-107 (147)
178 cd03360 LbH_AT_putative Putati 98.6 6.9E-07 1.5E-11 84.2 12.5 28 465-492 133-161 (197)
179 PRK05293 glgC glucose-1-phosph 98.6 1.8E-07 3.8E-12 98.9 8.8 81 391-491 294-380 (380)
180 TIGR03536 DapD_gpp 2,3,4,5-tet 98.5 4.8E-07 1E-11 91.2 11.1 15 476-490 251-265 (341)
181 COG0448 GlgC ADP-glucose pyrop 98.5 2.4E-07 5.2E-12 96.1 9.0 62 410-492 283-345 (393)
182 PLN02694 serine O-acetyltransf 98.5 2.2E-07 4.8E-12 93.5 8.4 80 406-491 166-246 (294)
183 PRK11132 cysE serine acetyltra 98.5 6.1E-07 1.3E-11 90.1 11.3 38 406-445 147-184 (273)
184 PRK02862 glgC glucose-1-phosph 98.5 3E-07 6.6E-12 98.9 9.7 99 408-527 294-423 (429)
185 TIGR02091 glgC glucose-1-phosp 98.5 3.3E-07 7.1E-12 96.2 9.5 53 419-491 291-343 (361)
186 TIGR02092 glgD glucose-1-phosp 98.5 3.8E-07 8.2E-12 96.1 9.5 40 404-443 302-342 (369)
187 PRK00725 glgC glucose-1-phosph 98.5 2.6E-07 5.7E-12 99.3 8.4 68 418-506 323-390 (425)
188 PRK13627 carnitine operon prot 98.5 3.9E-07 8.4E-12 87.7 8.4 60 465-526 56-120 (196)
189 cd05635 LbH_unknown Uncharacte 98.5 1E-06 2.2E-11 75.7 10.1 64 423-526 30-93 (101)
190 TIGR03570 NeuD_NnaD sugar O-ac 98.5 5E-07 1.1E-11 86.1 9.1 29 465-493 142-171 (201)
191 TIGR03535 DapD_actino 2,3,4,5- 98.5 9.1E-07 2E-11 88.8 10.5 20 354-373 109-130 (319)
192 PRK00844 glgC glucose-1-phosph 98.4 6.8E-07 1.5E-11 95.5 9.4 56 390-445 315-371 (407)
193 TIGR01172 cysE serine O-acetyl 98.4 8.1E-07 1.8E-11 82.9 8.4 37 406-444 67-103 (162)
194 cd03359 LbH_Dynactin_5 Dynacti 98.4 1.3E-06 2.8E-11 81.4 9.6 109 406-526 21-133 (161)
195 PRK09677 putative lipopolysacc 98.4 2.1E-06 4.6E-11 82.3 11.0 33 407-439 66-102 (192)
196 PLN02241 glucose-1-phosphate a 98.4 9.9E-07 2.1E-11 95.1 9.5 76 413-509 306-400 (436)
197 PRK10502 putative acyl transfe 98.4 1.5E-06 3.2E-11 82.8 9.4 78 407-493 72-154 (182)
198 cd00208 LbetaH Left-handed par 98.4 1.8E-06 3.9E-11 69.2 8.6 34 408-441 2-37 (78)
199 cd03358 LbH_WxcM_N_like WcxM-l 98.3 1.6E-06 3.5E-11 75.9 8.2 80 407-508 5-94 (119)
200 cd00208 LbetaH Left-handed par 98.3 2.4E-06 5.1E-11 68.5 8.4 52 423-492 1-61 (78)
201 PLN02357 serine acetyltransfer 98.3 1.4E-06 3E-11 90.1 8.6 80 407-492 233-313 (360)
202 PRK09527 lacA galactoside O-ac 98.3 3E-06 6.5E-11 81.9 10.0 103 387-497 58-165 (203)
203 KOG1460 GDP-mannose pyrophosph 98.3 1.5E-06 3.2E-11 86.3 7.6 63 380-442 290-360 (407)
204 cd04647 LbH_MAT_like Maltose O 98.3 2.7E-06 5.8E-11 73.1 8.4 33 406-440 7-39 (109)
205 TIGR01208 rmlA_long glucose-1- 98.3 2.6E-06 5.7E-11 89.1 9.8 92 406-522 254-352 (353)
206 COG0663 PaaY Carbonic anhydras 98.3 2.9E-06 6.4E-11 79.1 8.8 54 390-445 11-67 (176)
207 PF01704 UDPGP: UTP--glucose-1 98.3 3.1E-05 6.6E-10 82.8 17.7 215 92-324 54-289 (420)
208 cd00897 UGPase_euk Eukaryotic 98.3 0.00011 2.4E-09 75.0 20.6 214 93-324 2-234 (300)
209 cd04649 LbH_THP_succinylT_puta 98.3 3.3E-06 7.1E-11 76.7 8.4 37 406-446 13-53 (147)
210 cd03354 LbH_SAT Serine acetylt 98.2 4.6E-06 1E-10 71.2 7.9 62 406-493 8-72 (101)
211 COG2171 DapD Tetrahydrodipicol 98.2 5.7E-06 1.2E-10 81.5 8.9 9 391-399 109-117 (271)
212 TIGR03536 DapD_gpp 2,3,4,5-tet 98.2 7.5E-06 1.6E-10 82.7 9.7 15 423-437 225-239 (341)
213 PLN02435 probable UDP-N-acetyl 98.2 9.1E-05 2E-09 80.2 18.0 213 92-323 114-364 (493)
214 cd06424 UGGPase UGGPase cataly 98.2 8.5E-05 1.8E-09 76.2 17.0 216 96-325 2-254 (315)
215 cd03357 LbH_MAT_GAT Maltose O- 98.2 7.5E-06 1.6E-10 76.9 8.6 35 406-440 62-100 (169)
216 PRK09527 lacA galactoside O-ac 98.1 1.3E-05 2.8E-10 77.5 10.2 67 409-493 58-149 (203)
217 PF02348 CTP_transf_3: Cytidyl 98.1 0.00028 6.2E-09 68.3 19.6 178 96-319 1-189 (217)
218 PLN02739 serine acetyltransfer 98.1 4.9E-06 1.1E-10 85.5 7.3 27 465-491 264-291 (355)
219 PRK13412 fkp bifunctional fuco 98.1 2.5E-05 5.5E-10 90.3 13.8 218 216-480 154-394 (974)
220 COG1208 GCD1 Nucleoside-diphos 98.1 8.5E-06 1.8E-10 85.6 9.3 88 387-499 258-348 (358)
221 PF07959 Fucokinase: L-fucokin 98.1 2.7E-05 5.8E-10 83.3 13.1 97 215-324 54-159 (414)
222 cd03357 LbH_MAT_GAT Maltose O- 98.1 2E-05 4.3E-10 74.0 10.2 9 423-431 89-97 (169)
223 PRK10092 maltose O-acetyltrans 98.1 2.1E-05 4.5E-10 74.9 10.0 95 391-494 60-160 (183)
224 COG4284 UDP-glucose pyrophosph 98.1 0.00019 4E-09 76.3 17.6 212 92-320 103-336 (472)
225 PLN02830 UDP-sugar pyrophospho 98.0 0.0037 8E-08 69.8 28.2 217 93-324 127-384 (615)
226 KOG3121 Dynactin, subunit p25 98.0 5.3E-06 1.2E-10 73.8 4.8 93 406-505 39-131 (184)
227 cd05825 LbH_wcaF_like wcaF-lik 98.0 2.2E-05 4.8E-10 67.9 8.4 78 406-494 9-87 (107)
228 PRK10502 putative acyl transfe 98.0 1.9E-05 4.2E-10 75.1 8.7 33 407-439 52-88 (182)
229 PRK10191 putative acyl transfe 98.0 1.5E-05 3.2E-10 73.1 7.5 28 465-492 99-127 (146)
230 COG1045 CysE Serine acetyltran 98.0 1.6E-05 3.5E-10 75.0 7.5 82 406-493 73-155 (194)
231 PRK10191 putative acyl transfe 98.0 5.7E-05 1.2E-09 69.2 10.2 32 465-496 93-125 (146)
232 PRK09677 putative lipopolysacc 98.0 3.7E-05 8.1E-10 73.7 9.5 55 392-446 31-91 (192)
233 PRK10092 maltose O-acetyltrans 98.0 3.1E-05 6.8E-10 73.7 8.7 13 478-490 132-144 (183)
234 COG2171 DapD Tetrahydrodipicol 97.9 1.6E-05 3.5E-10 78.4 6.6 12 462-473 180-191 (271)
235 PLN02357 serine acetyltransfer 97.9 4.7E-05 1E-09 78.9 9.9 54 422-493 278-331 (360)
236 PLN02694 serine O-acetyltransf 97.9 5.2E-05 1.1E-09 76.5 9.3 14 226-239 56-69 (294)
237 TIGR01172 cysE serine O-acetyl 97.8 8.1E-05 1.8E-09 69.5 9.2 28 465-492 120-148 (162)
238 TIGR03535 DapD_actino 2,3,4,5- 97.8 8.9E-05 1.9E-09 74.7 9.8 6 464-469 225-230 (319)
239 PLN02739 serine acetyltransfer 97.8 8.3E-05 1.8E-09 76.6 9.5 78 407-496 212-290 (355)
240 cd03349 LbH_XAT Xenobiotic acy 97.8 7.8E-05 1.7E-09 68.3 8.4 19 422-440 21-39 (145)
241 KOG1322 GDP-mannose pyrophosph 97.8 1.2E-05 2.7E-10 81.1 3.3 93 402-511 259-352 (371)
242 PRK00576 molybdopterin-guanine 97.8 0.00054 1.2E-08 64.6 14.4 96 115-239 3-102 (178)
243 PRK11132 cysE serine acetyltra 97.8 0.00011 2.3E-09 74.1 9.7 28 465-492 200-228 (273)
244 cd05825 LbH_wcaF_like wcaF-lik 97.8 0.00023 5.1E-09 61.5 10.6 17 476-492 57-73 (107)
245 cd03354 LbH_SAT Serine acetylt 97.7 0.00021 4.5E-09 61.0 8.7 64 406-492 22-89 (101)
246 COG1045 CysE Serine acetyltran 97.7 0.00019 4.1E-09 67.9 8.5 88 386-491 69-170 (194)
247 COG1861 SpsF Spore coat polysa 97.6 0.00063 1.4E-08 65.5 11.9 116 94-244 3-124 (241)
248 cd04647 LbH_MAT_like Maltose O 97.6 0.00022 4.8E-09 61.1 7.5 35 407-445 2-38 (109)
249 KOG2638 UDP-glucose pyrophosph 97.5 0.0088 1.9E-07 62.5 18.8 356 92-486 101-497 (498)
250 TIGR02353 NRPS_term_dom non-ri 97.4 0.00038 8.2E-09 79.3 8.8 75 406-493 597-675 (695)
251 TIGR02353 NRPS_term_dom non-ri 97.4 0.00043 9.2E-09 78.9 9.0 80 406-498 112-195 (695)
252 COG0110 WbbJ Acetyltransferase 97.3 0.00063 1.4E-08 64.5 7.1 82 406-493 67-154 (190)
253 COG4801 Predicted acyltransfer 97.2 0.00097 2.1E-08 64.4 7.6 81 393-497 6-90 (277)
254 KOG4750 Serine O-acetyltransfe 97.1 0.00068 1.5E-08 65.1 5.4 17 477-493 202-218 (269)
255 COG4801 Predicted acyltransfer 97.1 0.0027 5.9E-08 61.4 9.3 74 402-493 29-104 (277)
256 KOG4042 Dynactin subunit p27/W 96.8 0.0014 3E-08 59.2 4.4 50 391-440 9-65 (190)
257 cd03349 LbH_XAT Xenobiotic acy 96.8 0.0059 1.3E-07 55.9 8.4 9 465-473 74-82 (145)
258 PF00132 Hexapep: Bacterial tr 96.5 0.0018 3.9E-08 44.3 2.3 13 478-490 4-16 (36)
259 KOG4750 Serine O-acetyltransfe 96.3 0.012 2.5E-07 56.9 7.1 21 424-444 170-190 (269)
260 KOG4042 Dynactin subunit p27/W 96.2 0.012 2.7E-07 53.1 6.1 34 408-445 10-43 (190)
261 KOG3121 Dynactin, subunit p25 95.8 0.03 6.6E-07 50.3 7.0 73 406-502 60-140 (184)
262 COG0110 WbbJ Acetyltransferase 95.3 0.044 9.4E-07 51.9 6.7 18 476-493 125-142 (190)
263 PF14602 Hexapep_2: Hexapeptid 95.2 0.022 4.8E-07 38.8 3.1 29 408-437 3-32 (34)
264 cd00761 Glyco_tranf_GTA_type G 95.0 0.61 1.3E-05 40.3 12.9 98 119-237 2-102 (156)
265 TIGR03552 F420_cofC 2-phospho- 94.4 0.19 4E-06 47.8 8.4 84 127-237 31-116 (195)
266 PF14602 Hexapep_2: Hexapeptid 93.6 0.089 1.9E-06 35.8 3.3 14 424-437 3-16 (34)
267 KOG2388 UDP-N-acetylglucosamin 93.4 0.49 1.1E-05 50.8 9.9 126 92-225 95-248 (477)
268 PF00535 Glycos_transf_2: Glyc 92.5 3.2 6.9E-05 36.7 12.8 110 119-249 3-115 (169)
269 PF07959 Fucokinase: L-fucokin 89.5 0.74 1.6E-05 49.5 6.4 98 341-445 224-324 (414)
270 cd02525 Succinoglycan_BP_ExoA 82.2 21 0.00045 34.2 12.1 106 119-246 5-115 (249)
271 cd04179 DPM_DPG-synthase_like 82.0 20 0.00043 32.7 11.3 108 120-248 3-115 (185)
272 cd04186 GT_2_like_c Subfamily 80.9 36 0.00077 30.0 12.3 98 119-240 2-102 (166)
273 cd04188 DPG_synthase DPG_synth 77.5 29 0.00062 32.8 11.1 109 120-248 3-118 (211)
274 cd06442 DPM1_like DPM1_like re 77.5 40 0.00086 31.8 12.1 108 119-247 2-113 (224)
275 cd06434 GT2_HAS Hyaluronan syn 76.1 46 0.001 31.6 12.3 97 119-238 5-103 (235)
276 cd06423 CESA_like CESA_like is 75.7 45 0.00098 29.0 11.4 101 119-239 2-105 (180)
277 cd06439 CESA_like_1 CESA_like_ 74.3 65 0.0014 31.0 13.0 98 118-238 33-135 (251)
278 cd04184 GT2_RfbC_Mx_like Myxoc 70.7 67 0.0015 29.6 11.7 103 120-243 7-115 (202)
279 cd02510 pp-GalNAc-T pp-GalNAc- 69.4 73 0.0016 32.1 12.4 105 119-242 3-113 (299)
280 COG1920 Predicted nucleotidylt 69.3 86 0.0019 30.2 11.5 105 95-237 1-111 (210)
281 PRK10073 putative glycosyl tra 68.4 57 0.0012 33.8 11.5 107 119-247 11-120 (328)
282 PLN02726 dolichyl-phosphate be 68.2 62 0.0013 31.4 11.2 49 193-247 79-128 (243)
283 cd04195 GT2_AmsE_like GT2_AmsE 67.5 1E+02 0.0022 28.4 12.2 99 119-239 3-107 (201)
284 cd06427 CESA_like_2 CESA_like_ 66.9 1E+02 0.0022 29.7 12.5 110 119-248 6-120 (241)
285 cd06433 GT_2_WfgS_like WfgS an 65.9 97 0.0021 28.1 11.6 101 120-244 4-108 (202)
286 cd04192 GT_2_like_e Subfamily 65.0 1.1E+02 0.0023 28.7 12.0 106 119-242 2-112 (229)
287 KOG2978 Dolichol-phosphate man 60.9 1.5E+02 0.0032 28.6 11.3 101 127-249 19-125 (238)
288 cd04187 DPM1_like_bac Bacteria 60.6 1E+02 0.0023 27.9 10.7 106 120-247 3-114 (181)
289 PRK13412 fkp bifunctional fuco 58.9 15 0.00033 43.6 5.6 29 465-493 343-372 (974)
290 cd06438 EpsO_like EpsO protein 54.0 1.8E+02 0.0038 26.6 13.4 106 119-244 2-112 (183)
291 PRK10018 putative glycosyl tra 53.9 2.4E+02 0.0052 28.5 12.8 97 120-239 11-112 (279)
292 PRK14583 hmsR N-glycosyltransf 52.3 1.6E+02 0.0034 31.8 11.8 100 119-239 80-182 (444)
293 PRK11204 N-glycosyltransferase 51.9 1.8E+02 0.0039 30.8 12.1 92 127-239 67-161 (420)
294 TIGR03469 HonB hopene-associat 51.6 2.5E+02 0.0054 29.6 13.0 114 121-244 47-165 (384)
295 PF13641 Glyco_tranf_2_3: Glyc 51.4 73 0.0016 30.1 8.2 105 119-242 6-116 (228)
296 cd06435 CESA_NdvC_like NdvC_li 50.9 1.6E+02 0.0034 28.0 10.5 102 119-238 3-110 (236)
297 TIGR03111 glyc2_xrt_Gpos1 puta 46.4 2.8E+02 0.0061 29.8 12.6 99 120-239 55-158 (439)
298 PF04519 Bactofilin: Polymer-f 46.1 63 0.0014 27.1 6.0 10 407-416 3-12 (101)
299 cd02520 Glucosylceramide_synth 44.9 2.6E+02 0.0056 25.9 11.8 103 119-237 6-111 (196)
300 cd04185 GT_2_like_b Subfamily 44.4 2.6E+02 0.0056 25.7 11.5 100 120-238 3-105 (202)
301 TIGR03472 HpnI hopanoid biosyn 42.0 2.6E+02 0.0056 29.3 11.3 105 119-239 46-153 (373)
302 cd02511 Beta4Glucosyltransfera 41.9 3E+02 0.0066 26.3 11.0 91 119-237 5-96 (229)
303 PTZ00260 dolichyl-phosphate be 40.4 3.5E+02 0.0076 28.0 11.8 50 193-248 148-201 (333)
304 cd06420 GT2_Chondriotin_Pol_N 39.5 2.7E+02 0.0059 24.9 9.8 100 119-237 2-104 (182)
305 PRK00923 sirohydrochlorin coba 38.0 55 0.0012 28.6 4.6 25 124-149 44-68 (126)
306 cd06421 CESA_CelA_like CESA_Ce 37.7 3.5E+02 0.0075 25.3 12.5 100 119-239 6-111 (234)
307 cd02522 GT_2_like_a GT_2_like_ 37.7 3.4E+02 0.0073 25.2 12.1 95 119-241 4-101 (221)
308 COG1664 CcmA Integral membrane 35.9 2E+02 0.0044 26.3 8.0 29 465-493 91-119 (146)
309 PRK11498 bcsA cellulose syntha 34.8 3.7E+02 0.0081 31.9 11.8 103 119-248 265-374 (852)
310 cd04196 GT_2_like_d Subfamily 33.0 3.9E+02 0.0084 24.5 11.8 98 119-236 3-103 (214)
311 COG1215 Glycosyltransferases, 30.3 4.1E+02 0.0089 27.9 10.7 106 118-242 58-167 (439)
312 PLN03181 glycosyltransferase; 27.5 2.5E+02 0.0054 30.3 7.9 84 139-230 125-216 (453)
313 PRK13915 putative glucosyl-3-p 27.4 5.1E+02 0.011 26.5 10.3 51 193-249 101-154 (306)
314 cd03409 Chelatase_Class_II Cla 26.8 1E+02 0.0023 25.3 4.3 24 127-150 45-68 (101)
315 cd02526 GT2_RfbF_like RfbF is 26.7 5.4E+02 0.012 24.1 15.6 93 120-234 3-97 (237)
316 TIGR01556 rhamnosyltran L-rham 25.7 6.5E+02 0.014 24.7 15.5 97 128-247 9-108 (281)
317 TIGR02990 ectoine_eutA ectoine 24.9 5E+02 0.011 25.7 9.3 96 129-236 108-203 (239)
318 PRK05782 bifunctional sirohydr 24.4 90 0.0019 32.7 4.1 58 90-150 1-73 (335)
319 PRK10063 putative glycosyl tra 23.8 6.9E+02 0.015 24.4 13.0 98 121-241 8-110 (248)
320 PF04519 Bactofilin: Polymer-f 22.8 3.4E+02 0.0073 22.6 6.7 17 428-444 36-52 (101)
321 cd06913 beta3GnTL1_like Beta 1 22.2 6.4E+02 0.014 23.5 11.7 108 119-241 2-113 (219)
No 1
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=100.00 E-value=2e-76 Score=581.56 Aligned_cols=367 Identities=43% Similarity=0.700 Sum_probs=331.9
Q ss_pred ccCCCCCCceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhcc
Q 009720 86 ERRRVDPKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFG 165 (527)
Q Consensus 86 ~~~~~~~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~ 165 (527)
+..+.+ +.|+|+||.||.||||+|||.++||||+|++++ |||+|+|++|+++||++|++.++|+++++++|+.+.|
T Consensus 2 ~~~~~~-~~vkaiILvGG~GTRLrPLT~t~pKPlVpfgn~-pmI~hqieal~nsGi~~I~la~~y~s~sl~~~~~k~y-- 77 (371)
T KOG1322|consen 2 ETRPAD-QSVKAIILVGGYGTRLRPLTLTRPKPLVPFGNK-PMILHQIEALINSGITKIVLATQYNSESLNRHLSKAY-- 77 (371)
T ss_pred Cccccc-cceeEEEEecCCCceeeceeccCCCcccccCcc-hhhHHHHHHHHhCCCcEEEEEEecCcHHHHHHHHHHh--
Confidence 345566 899999999999999999999999999999987 9999999999999999999999999999999999998
Q ss_pred CCcccCCCeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeecCCHHHHHHHHHHcCCcEE
Q 009720 166 NGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADIT 245 (527)
Q Consensus 166 ~~~~~~~~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~t 245 (527)
+.+++ |+++...|++ +.|++||++++|+.+|.+++ .+|+||+||++|++||++|+|+|+++++++|
T Consensus 78 -~~~lg---Vei~~s~ete----plgtaGpl~laR~~L~~~~~------~~ffVLnsDvi~~~p~~~~vqfH~~~gae~T 143 (371)
T KOG1322|consen 78 -GKELG---VEILASTETE----PLGTAGPLALARDFLWVFED------APFFVLNSDVICRMPYKEMVQFHRAHGAEIT 143 (371)
T ss_pred -hhccc---eEEEEEeccC----CCcccchHHHHHHHhhhcCC------CcEEEecCCeeecCCHHHHHHHHHhcCCceE
Confidence 33565 9999988875 68999999999999998873 4899999999999999999999999999999
Q ss_pred EEEEEcCCCCCCCceEEEECC-CCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHh
Q 009720 246 ISCAAVGESRASDYGLVKIDN-MGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRW 324 (527)
Q Consensus 246 v~~~~~~~~~~~~~g~v~~D~-~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~ 324 (527)
+++.++++ +++||+|++|+ +|+|.+|.|||+. +.+ +-.++|+|+|++++|++++
T Consensus 144 I~~t~vde--pSkyGvv~~d~~~grV~~F~EKPkd--~vs-------------------nkinaGiYi~~~~vL~ri~-- 198 (371)
T KOG1322|consen 144 IVVTKVDE--PSKYGVVVIDEDTGRVIRFVEKPKD--LVS-------------------NKINAGIYILNPEVLDRIL-- 198 (371)
T ss_pred EEEEeccC--ccccceEEEecCCCceeEehhCchh--hhh-------------------ccccceEEEECHHHHhHhh--
Confidence 99999998 89999999999 8999999999994 333 3456999999999999886
Q ss_pred hCCCCCchhhhhHHhhhhcCceEEEEecceEEecCCHHHHHHHHHHhhccCCCCccCCCCCCCCCCCccCCCeeeeceee
Q 009720 325 RYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRI 404 (527)
Q Consensus 325 ~~~~~~d~~~dii~~li~~~~V~~~~~~g~w~dIgt~~d~~~An~~ll~~~~~~~~~~~~~~i~~~~~~~~p~~i~~~~i 404 (527)
.+|+ ++++|++|.+++++++++|.++|||+|||+|+||+++ +.||+.+.|.++++++.||+.+.++++
T Consensus 199 ~~pt--SiekEifP~~a~~~~l~a~~l~gfWmDIGqpkdf~~g----------~~~Yl~s~~~~t~~r~~p~~~i~~nvl 266 (371)
T KOG1322|consen 199 LRPT--SIEKEIFPAMAEEHQLYAFDLPGFWMDIGQPKDFLTG----------FSFYLRSLPKYTSPRLLPGSKIVGNVL 266 (371)
T ss_pred hccc--chhhhhhhhhhhcCceEEEecCchhhhcCCHHHHHHH----------HHHHHhhCcccCCccccCCccccccEe
Confidence 4454 4899999999999999999999999999999999999 668888999999999999999999999
Q ss_pred eeeEEC--CCCEEcceeEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCcEEeeeEEcCCC
Q 009720 405 KDAIIS--HGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNV 482 (527)
Q Consensus 405 ~~s~I~--~g~~I~~~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~iI~~~~ 482 (527)
.|++++ ++|.|+ .||+||+||+|++|++|++|+||++++|++++++++++.++++|++++. +|++|+
T Consensus 267 vd~~~~iG~~C~Ig----~~vvIG~r~~i~~gV~l~~s~il~~~~~~~~s~i~s~ivg~~~~IG~~~-------~id~~a 335 (371)
T KOG1322|consen 267 VDSIASIGENCSIG----PNVVIGPRVRIEDGVRLQDSTILGADYYETHSEISSSIVGWNVPIGIWA-------RIDKNA 335 (371)
T ss_pred eccccccCCccEEC----CCceECCCcEecCceEEEeeEEEccceechhHHHHhhhccccccccCce-------EEeccc
Confidence 887655 455555 3499999999999999999999999999999999999999996555554 999999
Q ss_pred EECCCcEEeCCCCcCCCccCCCceEEecCeEEEccCCEeC
Q 009720 483 KIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIE 522 (527)
Q Consensus 483 ~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g~~vi~~~~~I~ 522 (527)
+||+||+|.|.+.++++ +++++++|+++|.++++|.
T Consensus 336 ~lG~nV~V~d~~~vn~g----~~l~~ks~~~~v~~~~iI~ 371 (371)
T KOG1322|consen 336 VLGKNVIVADEDYVNEG----SGLPIKSGITVVLKPAIIM 371 (371)
T ss_pred EeccceEEecccccccc----eeEEeccceeecccccccC
Confidence 99999999999999887 8899999999999999874
No 2
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.8e-75 Score=593.36 Aligned_cols=386 Identities=41% Similarity=0.709 Sum_probs=351.4
Q ss_pred CCCceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhh-ccCCcc
Q 009720 91 DPKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-FGNGTN 169 (527)
Q Consensus 91 ~~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y-~~~~~~ 169 (527)
.++++-|+|||||.|+||.|||+.|+||.+|+||||+|||++|+||.|+||++|+|+|+|++.+|.+||.+.| |+.+.
T Consensus 2 ~~~~~laiILaGg~G~rL~~LT~~RakpAVpFgGkYRiIDF~LSN~vNSGi~~I~VltQy~~~SL~~Hi~~G~~w~l~~- 80 (393)
T COG0448 2 MKKNVLAIILAGGRGSRLSPLTKDRAKPAVPFGGKYRIIDFALSNCVNSGIRRIGVLTQYKSHSLNDHIGRGWPWDLDR- 80 (393)
T ss_pred CccceEEEEEcCCCCCccchhhhCccccccccCceeEEEeEEcccccccCCCeEEEEeccchhHHHHHhhCCCcccccc-
Confidence 3678899999999999999999999999999999999999999999999999999999999999999998766 54432
Q ss_pred cCCCeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeecCCHHHHHHHHHHcCCcEEEEEE
Q 009720 170 FGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCA 249 (527)
Q Consensus 170 ~~~~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tv~~~ 249 (527)
..+++.++++.+. +.++.||+|||+|++|-++++++ ...+.+|+++|||+|++||.+++++|+++++|+|+++.
T Consensus 81 -~~~~v~ilp~~~~--~~~~~wy~Gtadai~Qnl~~i~~---~~~eyvlIlsgDhIYkmDy~~ml~~H~~~gadiTv~~~ 154 (393)
T COG0448 81 -KNGGVFILPAQQR--EGGERWYEGTADAIYQNLLIIRR---SDPEYVLILSGDHIYKMDYSDMLDFHIESGADVTVAVK 154 (393)
T ss_pred -ccCcEEEeCchhc--cCCCcceeccHHHHHHhHHHHHh---cCCCEEEEecCCEEEecCHHHHHHHHHHcCCCEEEEEE
Confidence 2357999988765 34567999999999999999984 56799999999999999999999999999999999999
Q ss_pred EcCCCCCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCC--
Q 009720 250 AVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP-- 327 (527)
Q Consensus 250 ~~~~~~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~-- 327 (527)
+++.+++++||++.+|++|+|++|.|||.... + ...++|||+|+|++++|.++|++...
T Consensus 155 ~Vp~~eas~fGim~~D~~~~i~~F~eKp~~~~----~---------------~~~laSMgiYIf~~~~L~~~L~~~~~~~ 215 (393)
T COG0448 155 EVPREEASRFGVMNVDENGRIIEFVEKPADGP----P---------------SNSLASMGIYIFNTDLLKELLEEDAKDP 215 (393)
T ss_pred ECChHhhhhcCceEECCCCCEEeeeeccCcCC----c---------------ccceeeeeeEEEcHHHHHHHHHHHhccc
Confidence 99999999999999999999999999998621 0 11379999999999999999987653
Q ss_pred -CCCchhhhhHHhhhhcCceEEEEecceEEecCCHHHHHHHHHHhhccCCCCccCCCCCCCCCCCccCCCeeeec-eeee
Q 009720 328 -TSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDN-CRIK 405 (527)
Q Consensus 328 -~~~d~~~dii~~li~~~~V~~~~~~g~w~dIgt~~d~~~An~~ll~~~~~~~~~~~~~~i~~~~~~~~p~~i~~-~~i~ 405 (527)
+..||+.++||.+++++++++|+|+|||.||||+++|++||++|++..+.+.+|+++|||||.....||+++.+ ..+.
T Consensus 216 ~~~~DfgkdiIp~~~~~~~v~AY~f~gYw~dVgTi~syy~aNmdLl~~~~~~~lyd~~w~IyT~~~~~pPak~~~~s~v~ 295 (393)
T COG0448 216 NSSHDFGKDIIPKLLERGKVYAYEFSGYWRDVGTIDSYYEANMDLLSPQPELNLYDRNWPIYTKNKNLPPAKFVNDSEVS 295 (393)
T ss_pred CccccchHHHHHHHHhcCCEEEEeccchhhhcccHHHHHHhhHHhcCCCCcccccCCCCceeecCCCCCCceEecCceEe
Confidence 35789999999999999999999999999999999999999999997788999999999999999999999954 7789
Q ss_pred eeEECCCCEEcceeEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCcEEeeeEEcCCCEEC
Q 009720 406 DAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIG 485 (527)
Q Consensus 406 ~s~I~~g~~I~~~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~iI~~~~~Ig 485 (527)
+|.|+.||.|.+ +|.||+|+.+++|+++|.|++|++|++ ++||+||+|++|||++||+|+
T Consensus 296 nSLv~~GciI~G-~V~nSVL~~~v~I~~gs~i~~svim~~-------------------~~IG~~~~l~~aIIDk~v~I~ 355 (393)
T COG0448 296 NSLVAGGCIISG-TVENSVLFRGVRIGKGSVIENSVIMPD-------------------VEIGEGAVLRRAIIDKNVVIG 355 (393)
T ss_pred eeeeeCCeEEEe-EEEeeEEecCeEECCCCEEEeeEEeCC-------------------cEECCCCEEEEEEeCCCcEeC
Confidence 999999999986 999999999999999999999999999 999999999999999999999
Q ss_pred CCcEEeCCCCcCCCccCCCceEEecCeEEEccCCEeCCCcc
Q 009720 486 KDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMV 526 (527)
Q Consensus 486 ~~~~i~~~~~v~~~~~~~~~~~i~~g~~vi~~~~~I~~g~v 526 (527)
+|++|++.. ++.++.. +.+. .|++||++++.++.+.+
T Consensus 356 ~g~~i~~~~--~~~d~~~-~~~~-~~ivVv~k~~~~~~~~~ 392 (393)
T COG0448 356 EGVVIGGDK--PEEDRKR-FRSE-EGIVVVPKGMVIKLDIM 392 (393)
T ss_pred CCcEEcCCc--chhcccc-cccc-CCcEEEecccEeccccc
Confidence 999999875 5666666 6666 99999999999998765
No 3
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=100.00 E-value=3.3e-67 Score=562.22 Aligned_cols=434 Identities=76% Similarity=1.262 Sum_probs=382.1
Q ss_pred CCceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhh-ccCCccc
Q 009720 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-FGNGTNF 170 (527)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y-~~~~~~~ 170 (527)
|++|+|||||||+||||+|||..+||||+||+|+||||+|+|++|.++|+++|+|+++++.+++.+|+.+.| ++.+..+
T Consensus 1 ~~~~~aIIlA~G~gtRl~PlT~~~PK~llpv~g~~plId~~L~~l~~~Gi~~i~iv~~~~~~~i~~~l~~~~~~~~~~~~ 80 (436)
T PLN02241 1 PKSVAAIILGGGAGTRLFPLTKRRAKPAVPIGGNYRLIDIPMSNCINSGINKIYVLTQFNSASLNRHLSRAYNFGNGGNF 80 (436)
T ss_pred CCceEEEEEeCCCCCcchhhhcCCcccceEeCCcceEehHHHHHHHhCCCCEEEEEeccCHHHHHHHHhccCCCCCCccc
Confidence 678999999999999999999999999999999889999999999999999999999999999999997655 4433334
Q ss_pred CCCeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeecCCHHHHHHHHHHcCCcEEEEEEE
Q 009720 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAA 250 (527)
Q Consensus 171 ~~~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tv~~~~ 250 (527)
..+.+.++...|.. ..+.|++||+++++++++++++....+.++||+++||++++.|+.+++++|+++++++|+++.+
T Consensus 81 ~~~~~~i~~~~q~~--~~~~~~lGt~~al~~~~~~~~~~~~~~~~~~lv~~gD~v~~~dl~~ll~~h~~~~a~~ti~~~~ 158 (436)
T PLN02241 81 GDGFVEVLAATQTP--GEKGWFQGTADAVRQFLWLFEDAKNKNVEEVLILSGDHLYRMDYMDFVQKHRESGADITIACLP 158 (436)
T ss_pred CCCCEEEcCCcccC--CCCccccCcHHHHHHHHHHHHhcccCCCCEEEEecCCeEEccCHHHHHHHHHHcCCCEEEEEEe
Confidence 33446776655532 1234789999999999988874221125899999999999999999999999999999999998
Q ss_pred cCCCCCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCCCCC
Q 009720 251 VGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSN 330 (527)
Q Consensus 251 ~~~~~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~~~~ 330 (527)
++.+++++||++.+|++++|.+|.|||..+....+++++++|++++.+....++++++|+|+|++++|..++++..+...
T Consensus 159 v~~~~~~~ygvv~~d~~~~v~~~~Ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GIyi~~~~~l~~ll~~~~~~~~ 238 (436)
T PLN02241 159 VDESRASDFGLMKIDDTGRIIEFSEKPKGDELKAMQVDTTVLGLSPEEAKEKPYIASMGIYVFKKDVLLKLLRWRFPTAN 238 (436)
T ss_pred cchhhcCcceEEEECCCCCEEEEEECCCCcccccccccccccccccccccccceEEEeEEEEEEHHHHHHHHHhhccccc
Confidence 87666789999999999999999999976656678899999998886555556899999999999999878876655555
Q ss_pred chhhhhHHhhhhc-CceEEEEecceEEecCCHHHHHHHHHHhhccCCCCccCCCCCCCCCCCccCCCeeeeceeeeeeEE
Q 009720 331 DFGSEIIPAAIME-HDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAII 409 (527)
Q Consensus 331 d~~~dii~~li~~-~~V~~~~~~g~w~dIgt~~d~~~An~~ll~~~~~~~~~~~~~~i~~~~~~~~p~~i~~~~i~~s~I 409 (527)
+|..++++.++.+ .++++|.++|||.|||+|++|++||+.++...+....+++.+++++..+..||+.+.+++|.+|+|
T Consensus 239 ~~~~dil~~l~~~g~~v~~~~~~gyw~dIg~~~~y~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~s~I 318 (436)
T PLN02241 239 DFGSEIIPGAIKEGYNVQAYLFDGYWEDIGTIKSFYEANLALTKQPPKFSFYDPDAPIYTSPRFLPPSKIEDCRITDSII 318 (436)
T ss_pred chhHHHHHHHhhcCCeEEEEeeCCEEEECCCHHHHHHHHHHHhcCCchhhccCCCCcccccCCCCCCcEecCCeEEEeEE
Confidence 7888999999987 689999999999999999999999999998777666777888999988888999998899989999
Q ss_pred CCCCEEcceeEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCcEEeeeEEcCCCEECCCcE
Q 009720 410 SHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVV 489 (527)
Q Consensus 410 ~~g~~I~~~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~iI~~~~~Ig~~~~ 489 (527)
+++|.|+++.|.+|+||++|+|++||+|.++++|+.++|++......+...|.+++.||++|+|++++|++++.||++++
T Consensus 319 ~~~~~I~~~~I~~svI~~~~~Ig~~~~I~~sii~g~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~vI~~~v~Ig~~~~ 398 (436)
T PLN02241 319 SHGCFLRECKIEHSVVGLRSRIGEGVEIEDTVMMGADYYETEEEIASLLAEGKVPIGIGENTKIRNAIIDKNARIGKNVV 398 (436)
T ss_pred cCCcEEcCeEEEeeEEcCCCEECCCCEEEEeEEECCCccccccccccccccCCcceEECCCCEEcceEecCCCEECCCcE
Confidence 99999997889999999999999999999999999988888766666666777777999999999999999999999999
Q ss_pred EeCCCCcCCCccCCCceEEecCeEEEccCCEeCCCccC
Q 009720 490 IVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 527 (527)
Q Consensus 490 i~~~~~v~~~~~~~~~~~i~~g~~vi~~~~~I~~g~vi 527 (527)
|.+.+++.+..+++++++|.+|+++||+++.|++|++|
T Consensus 399 i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 436 (436)
T PLN02241 399 IINKDGVQEADREEEGYYIRSGIVVILKNAVIPDGTVI 436 (436)
T ss_pred EecccccCCccccccccEEeCCEEEEcCCcEeCCCCCC
Confidence 99999999999999999999999899999999999986
No 4
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=3.6e-64 Score=537.52 Aligned_cols=428 Identities=57% Similarity=1.004 Sum_probs=370.2
Q ss_pred CCceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCcccC
Q 009720 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFG 171 (527)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~ 171 (527)
|++++|||||||.||||+|||..+||||+||+|+||||+|+|++|.++|+++|+|+++++.+++.+|+.+.|.-. .+.
T Consensus 1 m~~~~AVILAaG~GtRL~PLT~~~PK~Llpi~gk~plI~~~L~~l~~~Gi~~vivv~~~~~~~i~~~l~~~~~~~--~~~ 78 (429)
T PRK02862 1 MKRVLAIILGGGAGTRLYPLTKLRAKPAVPLAGKYRLIDIPISNCINSGINKIYVLTQFNSASLNRHISQTYNFD--GFS 78 (429)
T ss_pred CCcEEEEEECCCCCCcchhhhcCCcceeeEECCeeEEeHHHHHHHHHCCCCEEEEEecCCHHHHHHHHhcCcCcc--ccC
Confidence 568899999999999999999999999999999989999999999999999999999999999999996543111 111
Q ss_pred CCeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeecCCHHHHHHHHHHcCCcEEEEEEEc
Q 009720 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAV 251 (527)
Q Consensus 172 ~~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tv~~~~~ 251 (527)
.+.+.++...|.. ....|++||++||+++++++++ ...++|||++||++++.|+.+|++.|++.++++|+++.+.
T Consensus 79 ~g~~~i~~~~~~~--~~~~~~lGTa~al~~a~~~l~~---~~~~~~lVl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~ 153 (429)
T PRK02862 79 GGFVEVLAAQQTP--ENPSWFQGTADAVRKYLWHFQE---WDVDEYLILSGDQLYRMDYRLFVQHHRETGADITLAVLPV 153 (429)
T ss_pred CCEEEEeCCcccC--CCCccccCcHHHHHHHHHHHHh---cCCCEEEEecCCEEEeCCHHHHHHHHHHcCCCEEEEEEec
Confidence 2335555544432 1234668999999999999863 2247899999999999999999999999999999999887
Q ss_pred CCCCCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCCCCCc
Q 009720 252 GESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSND 331 (527)
Q Consensus 252 ~~~~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~~~~d 331 (527)
+.+++..||++.+|++|+|..|.|||.....+.+.+++++|...+.+.....+++++|+|+|++++|..+++... ...+
T Consensus 154 ~~~~~~~yG~i~~d~~g~V~~~~Ekp~~~~~~~~~~~~s~~~~~~~~~~~~~~~~n~Giyi~~~~vl~~~l~~~~-~~~~ 232 (429)
T PRK02862 154 DEKDASGFGLMKTDDDGRITEFSEKPKGDELKAMAVDTSRLGLSPEEAKGKPYLASMGIYVFSRDVLFDLLNKNP-EYTD 232 (429)
T ss_pred ChhhcccceEEEECCCCcEEEEEECCCccccchhcccccccccccccCCCCceEEEEEEEEEcHHHHHHHHHHCC-Chhh
Confidence 655577899999999999999999998655555667777776666665556679999999999999977776542 2346
Q ss_pred hhhhhHHhhhhcCceEEEEecceEEecCCHHHHHHHHHHhh-ccCCCCccCCCCCCCCCCCccCCCeeeeceeeeeeEEC
Q 009720 332 FGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALT-KESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIIS 410 (527)
Q Consensus 332 ~~~dii~~li~~~~V~~~~~~g~w~dIgt~~d~~~An~~ll-~~~~~~~~~~~~~~i~~~~~~~~p~~i~~~~i~~s~I~ 410 (527)
+..++++.++++.++++|.+++||.|+||+++|++||+.++ ...+....+.+.+++++...+.||+.+..++|.++.||
T Consensus 233 ~~~dil~~l~~~~~v~~~~~~g~w~digt~~~y~~an~~l~~~~~~~~~~~~~~~~i~~~~~~~~~a~~~~~~~~~~~ig 312 (429)
T PRK02862 233 FGKEIIPEAIRDYKVQSYLFDGYWEDIGTIEAFYEANLALTQQPNPPFSFYDEKAPIYTRARYLPPSKLLDATITESIIA 312 (429)
T ss_pred hHHHHHHHHhccCcEEEEEeCCEEEeCCCHHHHHHHHHHHHcCCCCcccccCCCCceeccCCCCCCccccccEEEeCEEC
Confidence 77799999998899999999999999999999999999998 55566667778899999999999999988899999999
Q ss_pred CCCEEcceeEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCcEEeeeEEcCCCEECCCcEE
Q 009720 411 HGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVI 490 (527)
Q Consensus 411 ~g~~I~~~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~iI~~~~~Ig~~~~i 490 (527)
++|.|.++.|.+|+||++|+||+||+|.+|++|+.++|..++.-..++-.+..++.||++|.|++|+|+++++||++++|
T Consensus 313 ~~~~i~~~~i~~svi~~~~~Ig~~~~i~~svi~~~~~~p~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~i~~~~~~ 392 (429)
T PRK02862 313 EGCIIKNCSIHHSVLGIRSRIESGCTIEDTLVMGADFYESSEEREELRKEGKPPLGIGEGTTIKRAIIDKNARIGNNVRI 392 (429)
T ss_pred CCCEECCcEEEEEEEeCCcEECCCCEEEeeEEecCcccccccccccccccCCcccEECCCCEEEEEEECCCcEECCCcEE
Confidence 99999768899999999999999999999999999988887777777778888899999999999999999999999999
Q ss_pred eCCCCcCCCccCCCceEEecCeEEEccCCEeCCCccC
Q 009720 491 VNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 527 (527)
Q Consensus 491 ~~~~~v~~~~~~~~~~~i~~g~~vi~~~~~I~~g~vi 527 (527)
.|.+.+.++++..+|++|..|+++|++++++++||.|
T Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (429)
T PRK02862 393 VNKDNVEEADREDQGFYIRDGIVVVVKNAVIPDGTVI 429 (429)
T ss_pred ecCCCcccccccccceEeeCCEEEEcCCcCCCCCCCC
Confidence 9999999999999999999999999999999999875
No 5
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=1.1e-57 Score=484.73 Aligned_cols=385 Identities=36% Similarity=0.637 Sum_probs=316.6
Q ss_pred CCCceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCccc
Q 009720 91 DPKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNF 170 (527)
Q Consensus 91 ~~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~ 170 (527)
.|++|+|||||||.||||+|||..+||||+||+|+||||+|+|++|.++|+++|+|+++|+.+++.+|+.+.| ... ..
T Consensus 2 ~~~~~~avILAaG~GtRl~PLT~~~PK~llPv~gk~plI~~~L~~l~~~Gi~~i~iv~~~~~~~i~~~~~~~~-~~~-~~ 79 (407)
T PRK00844 2 AMPKVLAIVLAGGEGKRLMPLTADRAKPAVPFGGSYRLIDFVLSNLVNSGYLRIYVLTQYKSHSLDRHISQTW-RLS-GL 79 (407)
T ss_pred CCCceEEEEECCCCCCccchhhcCCcccceeeCCcceEhHHHHHHHHHCCCCEEEEEeccCHHHHHHHHHhCc-Ccc-cc
Confidence 4788999999999999999999999999999999989999999999999999999999999999999996443 110 01
Q ss_pred CCCeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeecCCHHHHHHHHHHcCCcEEEEEEE
Q 009720 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAA 250 (527)
Q Consensus 171 ~~~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tv~~~~ 250 (527)
....+..+...+. .++.|++||++||+++++++.+ ...++|||++||++++.|+.+++++|+++++++|+++..
T Consensus 80 ~~~~~~~~~~~~~---~~~~~~lGta~al~~a~~~i~~---~~~~~~lv~~gD~v~~~dl~~l~~~h~~~~~~~ti~~~~ 153 (407)
T PRK00844 80 LGNYITPVPAQQR---LGKRWYLGSADAIYQSLNLIED---EDPDYVVVFGADHVYRMDPRQMVDFHIESGAGVTVAAIR 153 (407)
T ss_pred CCCeEEECCcccC---CCCCcccCCHHHHHHHHHHHHh---cCCCEEEEecCCEEEcCCHHHHHHHHHhcCCcEEEEEEe
Confidence 1112222111111 1245778999999999999963 122569999999999999999999999999999999887
Q ss_pred cCCCCCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCC---
Q 009720 251 VGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP--- 327 (527)
Q Consensus 251 ~~~~~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~--- 327 (527)
++.+.++.||++.+|++|+|+.|.|||...... .. ...+.++++|+|+|++++|.+++++...
T Consensus 154 ~~~~~~~~~Gvv~~d~~g~v~~~~eKp~~~~~~--~~------------~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~ 219 (407)
T PRK00844 154 VPREEASAFGVIEVDPDGRIRGFLEKPADPPGL--PD------------DPDEALASMGNYVFTTDALVDALRRDAADED 219 (407)
T ss_pred cchHHcccCCEEEECCCCCEEEEEECCCCcccc--cC------------CCCCcEEEeEEEEEeHHHHHHHHHHhhcCCc
Confidence 654456789999999999999999998643210 00 0124689999999999998777765321
Q ss_pred CCCchhhhhHHhhhhcCceEEEEe------------cceEEecCCHHHHHHHHHHhhccCCCCccCCCCCCCCCCCccCC
Q 009720 328 TSNDFGSEIIPAAIMEHDVQAYIF------------RDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLP 395 (527)
Q Consensus 328 ~~~d~~~dii~~li~~~~V~~~~~------------~g~w~dIgt~~d~~~An~~ll~~~~~~~~~~~~~~i~~~~~~~~ 395 (527)
...++..++++.+++++++++|.+ ++||.||||+++|++||+.+++..+.+.++++..++++..+..+
T Consensus 220 ~~~~~~~dii~~l~~~~~v~~~~~~~~~~~g~n~~~~g~w~Digt~~~y~~a~~~lL~~~~~~~~~~~~~~~~~~~~~~~ 299 (407)
T PRK00844 220 SSHDMGGDIIPRLVERGRAYVYDFSTNEVPGATERDRGYWRDVGTIDAYYDAHMDLLSVHPVFNLYNREWPIYTSSPNLP 299 (407)
T ss_pred ccccchhhHHHHHhccCeEEEEEcccccccccccCCCCEEEECCCHHHHHHHHHHHhCCCCccccCCCCCcccccCCCCC
Confidence 234677899999999999999977 59999999999999999999987777777778888998888888
Q ss_pred Ceeeec-e----eeeeeEECCCCEEcceeEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCC
Q 009720 396 PTKIDN-C----RIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRN 470 (527)
Q Consensus 396 p~~i~~-~----~i~~s~I~~g~~I~~~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~ 470 (527)
|+.+.. . .+.+++|+++|.|+++.|++|+||++|+|+++|+|+++++|.+ +.||++
T Consensus 300 ~~~~~~~~~~~~~~~~~~ig~~~~I~~~~i~~svIg~~~~I~~~~~i~~sii~~~-------------------~~i~~~ 360 (407)
T PRK00844 300 PAKFVDGGGRVGSAQDSLVSAGSIISGATVRNSVLSPNVVVESGAEVEDSVLMDG-------------------VRIGRG 360 (407)
T ss_pred CceEecCCCccceEEeCEEcCCCEECCeeeEcCEECCCCEECCCCEEeeeEECCC-------------------CEECCC
Confidence 887743 2 5689999999999878999999999999999999999999988 999999
Q ss_pred cEEeeeEEcCCCEECCCcEEeCCCCcCCCccCCCceEEe-cCeEEEccCCEe
Q 009720 471 TKIRNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIR-SGITIIMEKATI 521 (527)
Q Consensus 471 ~~I~~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~-~g~~vi~~~~~I 521 (527)
|+|.+|+|+++++|+++++|.+. . +.+ +++++|. +|+++|++|++|
T Consensus 361 ~~i~~~ii~~~~~i~~~~~i~~~--~-~~~--~~~~~~~~~~~~~i~~~~~~ 407 (407)
T PRK00844 361 AVVRRAILDKNVVVPPGATIGVD--L-EED--RRRFTVSEGGIVVVPKGQRV 407 (407)
T ss_pred CEEEeeEECCCCEECCCCEECCC--c-ccc--ccceEeccceEEEeCCCCCC
Confidence 99999999999999999999874 1 333 4588884 899999998865
No 6
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=7.2e-57 Score=474.38 Aligned_cols=373 Identities=37% Similarity=0.625 Sum_probs=314.8
Q ss_pred CCceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhh-ccCCccc
Q 009720 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-FGNGTNF 170 (527)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y-~~~~~~~ 170 (527)
|++|+|||||||+||||+|||..+||||+||+|+||||+|+|++|.++|+++|+|+++|+.+++.+|+.... |+....
T Consensus 1 ~~~m~avILAaG~GtRl~plT~~~PK~llpv~gk~pli~~~l~~l~~~Gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~- 79 (380)
T PRK05293 1 KKEMLAMILAGGQGTRLGKLTKNIAKPAVPFGGKYRIIDFTLSNCANSGIDTVGVLTQYQPLELNNHIGIGSPWDLDRI- 79 (380)
T ss_pred CCcEEEEEECCCCCcccchhhcCCccceeeeCCceeehhHHHHHHHhCCCCEEEEEecCCHHHHHHHHhCCCcccccCC-
Confidence 678999999999999999999999999999999988999999999999999999999999999988885211 221111
Q ss_pred CCCeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeecCCHHHHHHHHHHcCCcEEEEEEE
Q 009720 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAA 250 (527)
Q Consensus 171 ~~~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tv~~~~ 250 (527)
...++++...+.. ..+.|++||++||+++++++.+ ...++|||++||++++.++.++++.|+++++++|+++..
T Consensus 80 -~~~~~i~~~~~~~--~~~~~~~Gta~al~~a~~~l~~---~~~~~~lV~~gD~l~~~d~~~ll~~h~~~~~~~tl~~~~ 153 (380)
T PRK05293 80 -NGGVTILPPYSES--EGGKWYKGTAHAIYQNIDYIDQ---YDPEYVLILSGDHIYKMDYDKMLDYHKEKEADVTIAVIE 153 (380)
T ss_pred -CCCEEEeCCcccC--CCCcccCCcHHHHHHHHHHHHh---CCCCEEEEecCCEEEcCCHHHHHHHHHhcCCCEEEEEEE
Confidence 1235665322221 2345789999999999999862 123689999999999999999999999989999988877
Q ss_pred cCCCCCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCC---
Q 009720 251 VGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP--- 327 (527)
Q Consensus 251 ~~~~~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~--- 327 (527)
.+.++++.||++.+|++|+|.+|.|||..+. +.++++|+|+|++++|..+++....
T Consensus 154 ~~~~~~~~yG~v~~d~~g~V~~~~eKp~~~~---------------------~~~~~~Giyi~~~~~l~~~l~~~~~~~~ 212 (380)
T PRK05293 154 VPWEEASRFGIMNTDENMRIVEFEEKPKNPK---------------------SNLASMGIYIFNWKRLKEYLIEDEKNPN 212 (380)
T ss_pred cchhhccccCEEEECCCCcEEEEEeCCCCCC---------------------cceeeeEEEEEcHHHHHHHHHHHhhcCC
Confidence 6555577899999998899999999986432 3578999999999998777765432
Q ss_pred CCCchhhhhHHhhhhc-CceEEEEecceEEecCCHHHHHHHHHHhhccCCCCccCCCCCCCCCCCccCCCeeeec-eeee
Q 009720 328 TSNDFGSEIIPAAIME-HDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDN-CRIK 405 (527)
Q Consensus 328 ~~~d~~~dii~~li~~-~~V~~~~~~g~w~dIgt~~d~~~An~~ll~~~~~~~~~~~~~~i~~~~~~~~p~~i~~-~~i~ 405 (527)
...+|..++++.++++ .++++|.+++||.|+||+++|++||+.++...+...++++.+.+++.+.+.+|+.|++ ++|.
T Consensus 213 ~~~~~~~d~i~~l~~~~~~v~~~~~~g~w~digt~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~ 292 (380)
T PRK05293 213 SSHDFGKNVIPLYLEEGEKLYAYPFKGYWKDVGTIESLWEANMELLRPENPLNLFDRNWRIYSVNPNLPPQYIAENAKVK 292 (380)
T ss_pred chhhhHHHHHHHHhhcCCeEEEEEeCCEEEeCCCHHHHHHHHHHHcCCCchhhhcCCCCceecCCcCCCCCEECCCCEEe
Confidence 2346778999999976 6899999999999999999999999999987766667788888888888999999964 8889
Q ss_pred eeEECCCCEEcceeEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCcEEeeeEEcCCCEEC
Q 009720 406 DAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIG 485 (527)
Q Consensus 406 ~s~I~~g~~I~~~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~iI~~~~~Ig 485 (527)
++.|+++|.|+ +.+.+|+||++|+|+++|+|++++++.+ +.||++++|.+|+|+++++|+
T Consensus 293 ~~~Ig~~~~I~-~~v~~s~ig~~~~I~~~~~i~~svi~~~-------------------~~i~~~~~i~~~ii~~~~~i~ 352 (380)
T PRK05293 293 NSLVVEGCVVY-GTVEHSVLFQGVQVGEGSVVKDSVIMPG-------------------AKIGENVVIERAIIGENAVIG 352 (380)
T ss_pred cCEECCCCEEc-ceecceEEcCCCEECCCCEEECCEEeCC-------------------CEECCCeEEeEEEECCCCEEC
Confidence 99999999997 5688999999999999999999999988 999999999999999999999
Q ss_pred CCcEEeCCCCcCCCccCCCceEEecCeEEEccCCEeCCCccC
Q 009720 486 KDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 527 (527)
Q Consensus 486 ~~~~i~~~~~v~~~~~~~~~~~i~~g~~vi~~~~~I~~g~vi 527 (527)
+++.+.++.. +..+||++++|+++++|
T Consensus 353 ~~~~i~~~~~---------------~~~~ig~~~~~~~~~~~ 379 (380)
T PRK05293 353 DGVIIGGGKE---------------VITVIGENEVIGVGTVI 379 (380)
T ss_pred CCCEEcCCCc---------------eeEEEeCCCCCCCCcEe
Confidence 9999987531 13678999999999875
No 7
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=1.5e-55 Score=470.69 Aligned_cols=388 Identities=36% Similarity=0.627 Sum_probs=318.9
Q ss_pred CCCceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccC-Ccc
Q 009720 91 DPKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGN-GTN 169 (527)
Q Consensus 91 ~~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~-~~~ 169 (527)
.+++++|||||||.||||+|||..+||||+||+|+||||+|+|++|.++|+++|+|+++++.+++.+|+.+.| +. ...
T Consensus 12 ~~~~~~aVILAaG~GtRl~pLT~~~PK~llpv~gkp~lI~~~l~~l~~~Gi~~i~vv~~~~~~~i~~~~~~~~-~~~~~~ 90 (425)
T PRK00725 12 LTRDTLALILAGGRGSRLKELTDKRAKPAVYFGGKFRIIDFALSNCINSGIRRIGVLTQYKAHSLIRHIQRGW-SFFREE 90 (425)
T ss_pred hhcceEEEEECCCCCCcchhhhCCCcceeEEECCEEEEhHHHHHHHHHCCCCeEEEEecCCHHHHHHHHHhhh-cccccC
Confidence 3577999999999999999999999999999999955999999999999999999999999999999997543 11 001
Q ss_pred cCCCeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeecCCHHHHHHHHHHcCCcEEEEEE
Q 009720 170 FGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCA 249 (527)
Q Consensus 170 ~~~~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tv~~~ 249 (527)
....+.++...+.. ..+.|++||++|++++++++++ ...++|||++||++++.++.++++.|+++++++|+++.
T Consensus 91 -~~~~i~i~~~~~~~--~~e~~~lGTa~al~~a~~~l~~---~~~d~~lVl~gD~l~~~dl~~ll~~h~~~~~~~tl~~~ 164 (425)
T PRK00725 91 -LGEFVDLLPAQQRV--DEENWYRGTADAVYQNLDIIRR---YDPKYVVILAGDHIYKMDYSRMLADHVESGADCTVACL 164 (425)
T ss_pred -CCCeEEEeCCcccC--CCCccccCcHHHHHHHHHHHHh---cCCCEEEEecCCeEeccCHHHHHHHHHHcCCCEEEEEE
Confidence 11345666544432 1235778999999999999863 22468999999999999999999999999999999998
Q ss_pred EcCCCCCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhC---
Q 009720 250 AVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRY--- 326 (527)
Q Consensus 250 ~~~~~~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~--- 326 (527)
+++.+++..||++.+|++++|++|.|||..+.. ++ . ...++++++|+|+|++++|..+|++..
T Consensus 165 ~~~~~~~~~yG~v~~d~~~~V~~~~EKp~~~~~--~~----------~--~~~~~l~n~GIYi~~~~~L~~~L~~~~~~~ 230 (425)
T PRK00725 165 EVPREEASAFGVMAVDENDRITAFVEKPANPPA--MP----------G--DPDKSLASMGIYVFNADYLYELLEEDAEDP 230 (425)
T ss_pred ecchhhcccceEEEECCCCCEEEEEECCCCccc--cc----------c--CccceEEEeeEEEEeHHHHHHHHHHhhcCC
Confidence 775555778999999988999999999864320 00 0 012468999999999999877776532
Q ss_pred CCCCchhhhhHHhhhhcCceEEEEec-----------ceEEecCCHHHHHHHHHHhhccCCCCccCCCCCCCCCCCccCC
Q 009720 327 PTSNDFGSEIIPAAIMEHDVQAYIFR-----------DYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLP 395 (527)
Q Consensus 327 ~~~~d~~~dii~~li~~~~V~~~~~~-----------g~w~dIgt~~d~~~An~~ll~~~~~~~~~~~~~~i~~~~~~~~ 395 (527)
....+|.+|+++.++++.++++|.++ +||.||||+++|++||+.++...+...+++...++++.....|
T Consensus 231 ~~~~~~~~dii~~l~~~~~v~~~~~~g~~~~~~~~~~gyw~digt~~~y~~an~~ll~~~~~~~~~~~~~~i~t~~~~~~ 310 (425)
T PRK00725 231 NSSHDFGKDIIPKIVEEGKVYAHPFSDSCVRSDPEEEPYWRDVGTLDAYWQANLDLASVTPELDLYDRNWPIWTYQEQLP 310 (425)
T ss_pred CccchhhHHHHHHHhccCcEEEEEecCCccccccccCCeEEECCCHHHHHHHHHHHcCCCchhhccCCCCccccCCCCCC
Confidence 12346778999999999999999996 5999999999999999999987776667777888988888888
Q ss_pred Ceeee------ceeeeeeEECCCCEEcceeEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCC
Q 009720 396 PTKID------NCRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGR 469 (527)
Q Consensus 396 p~~i~------~~~i~~s~I~~g~~I~~~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~ 469 (527)
|+.+. .+.+.+|+|++||+|.++.|.+|+||++|+|+++|+|++|++|++ +.||+
T Consensus 311 ~~~~~~~~~~~~~~~~~s~i~~~~~i~~~~i~~svi~~~~~I~~~~~i~~svi~~~-------------------~~I~~ 371 (425)
T PRK00725 311 PAKFVFDRSGRRGMAINSLVSGGCIISGAVVRRSVLFSRVRVNSFSNVEDSVLLPD-------------------VNVGR 371 (425)
T ss_pred CCeEeccCCCCcceEEeCEEcCCcEEcCccccCCEECCCCEECCCCEEeeeEEcCC-------------------CEECC
Confidence 88662 145789999999999878899999999999999999999999998 99999
Q ss_pred CcEEeeeEEcCCCEECCCcEEeCCCCcCCCccCCCceEE-ecCeEEEccCCEeCC
Q 009720 470 NTKIRNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYI-RSGITIIMEKATIED 523 (527)
Q Consensus 470 ~~~I~~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i-~~g~~vi~~~~~I~~ 523 (527)
+|+|.+|||+++++|+++++|+... .++ +++.+| ..|+++|++++.+.-
T Consensus 372 ~~~i~~~ii~~~~~i~~~~~i~~~~-~~~----~~~~~~~~~~~~~i~~~~~~~~ 421 (425)
T PRK00725 372 SCRLRRCVIDRGCVIPEGMVIGEDP-EED----AKRFRRSEEGIVLVTREMLDKL 421 (425)
T ss_pred CCEEeeEEECCCCEECCCCEECCCC-CCC----CceeEecCccEEEECCCccccc
Confidence 9999999999999999999996442 222 334555 889999999977643
No 8
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=100.00 E-value=5.8e-51 Score=426.52 Aligned_cols=356 Identities=50% Similarity=0.852 Sum_probs=289.8
Q ss_pred EEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCcccCCCeEE
Q 009720 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVE 176 (527)
Q Consensus 97 aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~~V~ 176 (527)
|||||||.||||+|||+++||||+||+|+||||+|++++|.++|+++|+|++++..+++.+|+.+.| +.. ......++
T Consensus 1 aiILAaG~gtRl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~-~~~-~~~~~~~~ 78 (361)
T TIGR02091 1 AMVLAGGRGSRLSPLTKRRAKPAVPFGGKYRIIDFPLSNCINSGIRRIGVLTQYKSHSLNRHIQRGW-DFD-GFIDGFVT 78 (361)
T ss_pred CEEeCCCCCCccchhhhCCccccceecceeeEeeehhhhhhhcCCceEEEEeccChHHHHHHHHhcc-Ccc-CccCCCEE
Confidence 6999999999999999999999999999967999999999999999999999999999999997433 111 00012356
Q ss_pred EeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeecCCHHHHHHHHHHcCCcEEEEEEEcCCCCC
Q 009720 177 VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRA 256 (527)
Q Consensus 177 vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tv~~~~~~~~~~ 256 (527)
++...+. +..+.|++||+++++.+++++++ ...++|++++||++++.++.++++.|++.++++++++.+.+.+.+
T Consensus 79 ~~~~~~~--~~~~~~~~Gt~~al~~a~~~~~~---~~~~~~lv~~gD~l~~~~l~~~l~~~~~~~~~~ti~~~~~~~~~~ 153 (361)
T TIGR02091 79 LLPAQQR--ESGTDWYQGTADAVYQNLDLIED---YDPEYVLILSGDHIYKMDYEKMLDYHIESGADVTIACIPVPRKEA 153 (361)
T ss_pred EeCCccc--CCCCccccCcHHHHHHHHHHHHh---cCCCEEEEecCCEEEcCCHHHHHHHHHHcCCCEEEEEEecChHhc
Confidence 6543332 12345778999999999998863 124689999999999999999999999888888988887765556
Q ss_pred CCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCC---CCCchh
Q 009720 257 SDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP---TSNDFG 333 (527)
Q Consensus 257 ~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~---~~~d~~ 333 (527)
..||++.+|++++|..|.|||..+... .+. + ..+++++|+|+|++++|..+++.... ...+|.
T Consensus 154 ~~~g~v~~d~~~~v~~~~ekp~~~~~~--------~~~-~-----~~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~~ 219 (361)
T TIGR02091 154 SRFGVMQVDEDGRIVDFEEKPANPPSI--------PGM-P-----DFALASMGIYIFDKDVLKELLEEDADDPESSHDFG 219 (361)
T ss_pred ccccEEEECCCCCEEEEEECCCCcccc--------ccc-c-----cccEEeeeEEEEcHHHHHHHHHHHhhcCCcccccH
Confidence 789999999889999999998543210 000 0 12479999999999998666665321 234567
Q ss_pred hhhHHhhhhcCceEEEEecceEEecCCHHHHHHHHHHhhccCCCCccCCCCCCCCCC-CccCCCeeeec-eeeeeeEECC
Q 009720 334 SEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTS-PRFLPPTKIDN-CRIKDAIISH 411 (527)
Q Consensus 334 ~dii~~li~~~~V~~~~~~g~w~dIgt~~d~~~An~~ll~~~~~~~~~~~~~~i~~~-~~~~~p~~i~~-~~i~~s~I~~ 411 (527)
.++++.+++++++++|.++++|.||||+++|++|++.++++.+....+....++.+. ..+.+++.+++ +.|.+|+||+
T Consensus 220 ~d~l~~l~~~~~v~~~~~~~~w~digt~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~ig~ 299 (361)
T TIGR02091 220 KDIIPRALEEGSVQAYLFSGYWRDVGTIDSFWEANMDLVSVVPPFDLYDRKWPIYTYNEFLPPAKFVDSDAQVVDSLVSE 299 (361)
T ss_pred HHHHHHHhhcCceEEEeeCCEEEECCCHHHHHHHHHHHhCCCchhhccccCCceecCCCCCCCceEecCCCEEECCEECC
Confidence 799999999999999999999999999999999999999876544344444555433 34556677765 5788999999
Q ss_pred CCEEcceeEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCcEEeeeEEcCCCEECCCcEEe
Q 009720 412 GCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIV 491 (527)
Q Consensus 412 g~~I~~~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~iI~~~~~Ig~~~~i~ 491 (527)
+|.|+++.|.+|+||++|+|+++|+|.+|+++++ +.||++++|++|+||++++|+++++|+
T Consensus 300 ~~~I~~~~v~~s~i~~~~~I~~~~~i~~sii~~~-------------------~~v~~~~~l~~~ivg~~~~i~~~~~i~ 360 (361)
T TIGR02091 300 GCIISGATVSHSVLGIRVRIGSGSTVEDSVIMGD-------------------VGIGRGAVIRNAIIDKNVRIGEGVVIG 360 (361)
T ss_pred CCEECCCEEEccEECCCCEECCCCEEeeeEEeCC-------------------CEECCCCEEeeeEECCCCEECCCCEeC
Confidence 9999987899999999999999999999999988 899999999999999999999999997
Q ss_pred C
Q 009720 492 N 492 (527)
Q Consensus 492 ~ 492 (527)
|
T Consensus 361 ~ 361 (361)
T TIGR02091 361 N 361 (361)
T ss_pred C
Confidence 5
No 9
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=100.00 E-value=3.7e-51 Score=429.38 Aligned_cols=350 Identities=24% Similarity=0.410 Sum_probs=278.4
Q ss_pred CceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCch-hHHHHHHHhh-ccCCccc
Q 009720 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSA-SLNRHIARTY-FGNGTNF 170 (527)
Q Consensus 93 ~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~-~i~~hl~~~y-~~~~~~~ 170 (527)
+.|+|||||||.||||+|||.++||||+||+|+||||+|+|++|.++|+++|+|+++|..+ ++.+|+.+.. |+.....
T Consensus 1 ~~~~avila~g~gtRL~PLT~~~PKpLlpV~gk~PlIe~~l~~L~~~Gi~~I~iv~~~~~~~~I~~~l~~~~~~~~~~~~ 80 (369)
T TIGR02092 1 NKMSAIINLTESSKNLSPLTKVRPLASLPFGGRYRLIDFPLSNMVNAGIRNVFIFFKNKERQSLFDHLGSGREWDLHRKR 80 (369)
T ss_pred CcEEEEEECCCCCccccccccCCcccccccCCeeeEEEEEhhhhhccCCCEEEEEeCCCcHHHHHHHHhCCCCCCccccc
Confidence 3689999999999999999999999999999997899999999999999999999999987 8988885321 2211110
Q ss_pred CCCeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeecCCHHHHHHHHHHcCCcEEEEEEE
Q 009720 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAA 250 (527)
Q Consensus 171 ~~~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tv~~~~ 250 (527)
. +...++ .+.. +.|..|++++++++++++++ ...++|||++||++++.||.+++++|+++++++|+++.+
T Consensus 81 ~-~~~~~~--~~e~----~~l~tg~~~a~~~a~~~l~~---~~~~~~lvlnGD~l~~~dl~~ll~~h~~~~a~~tl~~~~ 150 (369)
T TIGR02092 81 D-GLFVFP--YNDR----DDLSEGGKRYFSQNLEFLKR---STSEYTVVLNSHMVCNIDLKAVLKYHEETGKDITVVYKK 150 (369)
T ss_pred C-cEEEEe--ccCC----CCcccChHHHHHHHHHHHHh---CCCCEEEEECCCEEEecCHHHHHHHHHHcCCCEEEEEEe
Confidence 0 111111 1211 12334777889999888852 123789999999999999999999999999999999988
Q ss_pred cCCCCCCCc-eEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCCC-
Q 009720 251 VGESRASDY-GLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT- 328 (527)
Q Consensus 251 ~~~~~~~~~-g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~~- 328 (527)
++...+..| +++..|++|+|..+.+++... .+..+++|+|+|++++|..+++...+.
T Consensus 151 v~~~~~~~~g~vv~~~~~g~v~~~~~~~~~~---------------------~~~~~~~Giyi~~~~~l~~~l~~~~~~~ 209 (369)
T TIGR02092 151 VKPADASEYDTILRFDESGKVKSIGQNLNPE---------------------EEENISLDIYIVSTDLLIELLYECIQRG 209 (369)
T ss_pred cCHHHccccCcEEEEcCCCCEEeccccCCCC---------------------CcceeeeeEEEEEHHHHHHHHHHHhhcC
Confidence 764345667 456777778888875433221 124568999999999887676654332
Q ss_pred CCchhhhhHHhhhhcCceEEEEecceEEecCCHHHHHHHHHHhhccCCCCccC-CCCCCCCCCCccCCCeeee-ceeeee
Q 009720 329 SNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFY-DPKTPFYTSPRFLPPTKID-NCRIKD 406 (527)
Q Consensus 329 ~~d~~~dii~~li~~~~V~~~~~~g~w~dIgt~~d~~~An~~ll~~~~~~~~~-~~~~~i~~~~~~~~p~~i~-~~~i~~ 406 (527)
..++..++++.++++.++++|.+++||.||||+++|.+||++++++......+ ....++++.....+|+.|. +++|.+
T Consensus 210 ~~~~~~d~i~~~~~~~~v~~~~~~g~w~dIgt~~~l~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~i~~ 289 (369)
T TIGR02092 210 KLTSLEELIRENLKELNINAYEYTGYLANINSVKSYYKANMDLLDPQNFQSLFYSSQGPIYTKVKDEPPTYYAENSKVEN 289 (369)
T ss_pred ccccHHHHHHHHhccCcEEEEecCCceeEcCCHHHHHHHHHHHhCCcchhhhcCCCCCceeeccCCCCCcEEcCCCEEEE
Confidence 22445688998888889999999999999999999999999999775332222 2334666666667999995 488999
Q ss_pred eEECCCCEEcceeEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCcEEeeeEEcCCCEECC
Q 009720 407 AIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGK 486 (527)
Q Consensus 407 s~I~~g~~I~~~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~iI~~~~~Ig~ 486 (527)
|+||+||.|+ +.|++|+||++|+|++||+|.+++++++ +.|++++.|.+|+||++++||+
T Consensus 290 ~~Ig~~~~i~-~~v~~s~i~~~~~I~~~~~i~~sii~~~-------------------~~I~~~~~i~~~ii~~~~~v~~ 349 (369)
T TIGR02092 290 SLVANGCIIE-GKVENSILSRGVHVGKDALIKNCIIMQR-------------------TVIGEGAHLENVIIDKDVVIEP 349 (369)
T ss_pred eEEcCCCEEe-eEEeCCEECCCCEECCCCEEEeeEEeCC-------------------CEECCCCEEEEEEECCCCEECC
Confidence 9999999997 6799999999999999999999999988 9999999999999999999999
Q ss_pred CcEEeCC
Q 009720 487 DVVIVNK 493 (527)
Q Consensus 487 ~~~i~~~ 493 (527)
++.+.+.
T Consensus 350 ~~~~~~~ 356 (369)
T TIGR02092 350 NVKIAGT 356 (369)
T ss_pred CCEeCCC
Confidence 9999764
No 10
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.4e-51 Score=423.91 Aligned_cols=352 Identities=26% Similarity=0.453 Sum_probs=282.2
Q ss_pred ceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCcccCCC
Q 009720 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (527)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~ 173 (527)
.|+|||||||+||||+|||..+||||+||+|+ |||+|+|++|.+.|+++|+|+++|..+++.+|+...+ .++ .
T Consensus 1 ~mkavILagG~GtRLrPlT~~~PKPllpI~gk-Pii~~~l~~L~~~Gv~eivi~~~y~~~~i~~~~~d~~-----~~~-~ 73 (358)
T COG1208 1 PMKAVILAGGYGTRLRPLTDDRPKPLLPIAGK-PLIEYVLEALAAAGVEEIVLVVGYLGEQIEEYFGDGE-----GLG-V 73 (358)
T ss_pred CceEEEEeCCccccccccccCCCcccceeCCc-cHHHHHHHHHHHCCCcEEEEEeccchHHHHHHHhccc-----ccC-C
Confidence 48999999999999999999999999999999 9999999999999999999999999999987775321 222 1
Q ss_pred eEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeecCCHHHHHHHHHHcCCcEEEEEEEcCC
Q 009720 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGE 253 (527)
Q Consensus 174 ~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tv~~~~~~~ 253 (527)
.++++.... ++||+++|+++.+++. .++|++++||++++.|+.+++++|+++.+..++...++.+
T Consensus 74 ~I~y~~e~~---------~lGTag~l~~a~~~l~------~~~f~v~~GDv~~~~dl~~l~~~~~~~~~~~~~~~~~~~~ 138 (358)
T COG1208 74 RITYVVEKE---------PLGTAGALKNALDLLG------GDDFLVLNGDVLTDLDLSELLEFHKKKGALATIALTRVLD 138 (358)
T ss_pred ceEEEecCC---------cCccHHHHHHHHHhcC------CCcEEEEECCeeeccCHHHHHHHHHhccCccEEEEEecCC
Confidence 245444333 2699999999998885 2799999999999999999999999988888888888877
Q ss_pred CCCCCceEEEECCC-CceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCCCCCch
Q 009720 254 SRASDYGLVKIDNM-GRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDF 332 (527)
Q Consensus 254 ~~~~~~g~v~~D~~-g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~~~~d~ 332 (527)
+ +.||++..+++ ++|.+|.|||..... .++++++|+|+|++++|. +++. ....+|
T Consensus 139 ~--~~~Gvv~~~~~~~~v~~f~ekp~~~~~-------------------~~~~in~Giyi~~~~v~~-~i~~--~~~~~~ 194 (358)
T COG1208 139 P--SEFGVVETDDGDGRVVEFREKPGPEEP-------------------PSNLINAGIYIFDPEVFD-YIEK--GERFDF 194 (358)
T ss_pred C--CcCceEEecCCCceEEEEEecCCCCCC-------------------CCceEEeEEEEECHHHhh-hccc--CCcccc
Confidence 5 78999998844 599999999953110 247999999999999997 3332 234567
Q ss_pred hhhhHHhhhhcCc-eEEEEecceEEecCCHHHHHHHHHHhhccCCCCccCCCCCC---CCCCCccCCCeeeeceeeeeeE
Q 009720 333 GSEIIPAAIMEHD-VQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTP---FYTSPRFLPPTKIDNCRIKDAI 408 (527)
Q Consensus 333 ~~dii~~li~~~~-V~~~~~~g~w~dIgt~~d~~~An~~ll~~~~~~~~~~~~~~---i~~~~~~~~p~~i~~~~i~~s~ 408 (527)
..++++.++++.. +++|.++|||.|||||+||.+|+..+.+............+ +.. +.+.+|+++.. ++.
T Consensus 195 ~~~~~~~l~~~~~~v~~~~~~g~W~dig~p~d~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~gp~~ig~----~~~ 269 (358)
T COG1208 195 EEELLPALAAKGEDVYGYVFEGYWLDIGTPEDLLEANELLLRGDGKSPLGPIEEPVVIIRS-AYIIGPVVIGP----GAK 269 (358)
T ss_pred hhhHHHHHHhCCCcEEEEEeCCeEEeCCCHHHHHHHHHHHHhccccccccccccccccccc-ceEeCCEEECC----CCE
Confidence 7789999999986 99999999999999999999999999965433211000000 111 23334444433 455
Q ss_pred ECCCCEEcceeEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCcEEeeeEEcCCCEECCCc
Q 009720 409 ISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDV 488 (527)
Q Consensus 409 I~~g~~I~~~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~iI~~~~~Ig~~~ 488 (527)
|+++|.|+ .+|+||++|+|+.+++|+++++|++ +.||++++|.+|||+.|++||++.
T Consensus 270 i~~~~~i~----~~~~ig~~~~I~~~~~i~~Sii~~~-------------------~~i~~~~~i~~sIi~~~~~ig~~~ 326 (358)
T COG1208 270 IGPGALIG----PYTVIGEGVTIGNGVEIKNSIIMDN-------------------VVIGHGSYIGDSIIGENCKIGASL 326 (358)
T ss_pred ECCCCEEC----CCcEECCCCEECCCcEEEeeEEEcC-------------------CEECCCCEEeeeEEcCCcEECCce
Confidence 55555555 3599999999999999999999998 999999999999999999999932
Q ss_pred EEeCCCCcCCCccCCCceEEecCeEEEccCCEeCCCccC
Q 009720 489 VIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 527 (527)
Q Consensus 489 ~i~~~~~v~~~~~~~~~~~i~~g~~vi~~~~~I~~g~vi 527 (527)
+ +.+ ..++.++.+..| +++++++.+.+++++
T Consensus 327 -~-----i~d-~~~g~~~~i~~g-~~~~~~~~~~~~~~~ 357 (358)
T COG1208 327 -I-----IGD-VVIGINSEILPG-VVVGPGSVVESGEIE 357 (358)
T ss_pred -e-----ecc-eEecCceEEcCc-eEeCCCccccCcccc
Confidence 2 778 888888899888 566999998888753
No 11
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=100.00 E-value=5.4e-46 Score=388.06 Aligned_cols=327 Identities=20% Similarity=0.349 Sum_probs=251.6
Q ss_pred EEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEecc-CchhHHHHHHHhhccCCcccCCCe
Q 009720 96 AAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQF-NSASLNRHIARTYFGNGTNFGDGF 174 (527)
Q Consensus 96 ~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~-~~~~i~~hl~~~y~~~~~~~~~~~ 174 (527)
+|||||||.||||+|+|..+||||+||+|+ |||+|+|++|.++|+++|+|++++ ..+++.+|+.. +..|+. .
T Consensus 1 kaiIlAaG~gtRl~plt~~~pK~l~pv~g~-pli~~~l~~l~~~gi~~i~vv~~~~~~~~i~~~~~~-----~~~~~~-~ 73 (353)
T TIGR01208 1 KALILAAGKGTRLRPLTFTRPKQLIPVANK-PILQYAIEDLAEAGITDIGIVVGPVTGEEIKEIVGE-----GERFGA-K 73 (353)
T ss_pred CEEEECCcCcCccCccccCCCccccEECCE-eHHHHHHHHHHHCCCCEEEEEeCCCCHHHHHHHHhc-----ccccCc-e
Confidence 589999999999999999999999999999 999999999999999999999999 88888888752 123331 1
Q ss_pred EEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeecCCHHHHHHHHHHcCCcEEEEEEEcCCC
Q 009720 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGES 254 (527)
Q Consensus 175 V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tv~~~~~~~~ 254 (527)
+.++. +. ++.||+++++.++++++ .++|++++||++++.++.++++.|+++++++++++.+.++
T Consensus 74 ~~~~~--~~-------~~~G~~~al~~a~~~l~------~~~~li~~gD~~~~~~l~~l~~~~~~~~~d~ti~~~~~~~- 137 (353)
T TIGR01208 74 ITYIV--QG-------EPLGLAHAVYTARDFLG------DDDFVVYLGDNLIQDGISRFVKSFEEKDYDALILLTKVRD- 137 (353)
T ss_pred EEEEE--CC-------CCCCHHHHHHHHHHhcC------CCCEEEEECCeecCccHHHHHHHHHhcCCCcEEEEEECCC-
Confidence 33332 21 23699999999998885 2689999999999999999999999999999999988765
Q ss_pred CCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCCC--CCch
Q 009720 255 RASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT--SNDF 332 (527)
Q Consensus 255 ~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~~--~~d~ 332 (527)
+..||++.+|++++|.+|.|||.... +...++|+|+|++.++. ++++..+. ...+
T Consensus 138 -~~~~g~~~~~~~~~v~~~~ekp~~~~---------------------~~~~~~Giy~~~~~l~~-~l~~~~~~~~~e~~ 194 (353)
T TIGR01208 138 -PTAFGVAVLEDGKRILKLVEKPKEPP---------------------SNLAVVGLYMFRPLIFE-AIKNIKPSWRGELE 194 (353)
T ss_pred -hhhCeEEEEcCCCcEEEEEECCCCCC---------------------ccceEEEEEEECHHHHH-HHHhcCCCCCCcEE
Confidence 46799988877789999999987432 35789999999997665 55544332 2234
Q ss_pred hhhhHHhhhhc-CceEEEEecceEEecCCHHHHHHHHHHhhccCCCCccCCCCCCCCCCCccCCCeeeec-eeeeeeEEC
Q 009720 333 GSEIIPAAIME-HDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDN-CRIKDAIIS 410 (527)
Q Consensus 333 ~~dii~~li~~-~~V~~~~~~g~w~dIgt~~d~~~An~~ll~~~~~~~~~~~~~~i~~~~~~~~p~~i~~-~~i~~s~I~ 410 (527)
..++++.++++ .++++|.+++||.|||||+||++||+.++.+... .+ .++.+.+.+.+|+.|.+ +.|.+++|+
T Consensus 195 l~d~l~~l~~~g~~v~~~~~~g~w~digt~~dl~~a~~~ll~~~~~-~~----~~i~~~~~i~~~~~i~~~~~i~~~~i~ 269 (353)
T TIGR01208 195 ITDAIQWLIEKGYKVGGSKVTGWWKDTGKPEDLLDANRLILDEVER-EV----QGVDDESKIRGRVVVGEGAKIVNSVIR 269 (353)
T ss_pred HHHHHHHHHHcCCeEEEEEeCcEEEeCCCHHHHHHHHHHHHhhccc-cc----CCcCCCCEEcCCEEECCCCEEeCCEEE
Confidence 57899999877 5899999999999999999999999999975321 11 12455566667777743 666666665
Q ss_pred CCCEEc-ceeEeecEEcCCcEECCCCEEe-----eeEEeCCcccCchhhHHhhhcCCccceEeCCC-cEEeeeEEcCCCE
Q 009720 411 HGCFLR-ECTVEHSIVGERSRLDYGVELK-----DTVMLGADYYQTESEIASLLAEGKVPIGVGRN-TKIRNCIIDKNVK 483 (527)
Q Consensus 411 ~g~~I~-~~~i~~svIg~~~~I~~~~~I~-----~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~-~~I~~~iI~~~~~ 483 (527)
.+|.|+ +|.|.+|+|+++|+|+++|+|+ +++++.+ +.|+.+ +.+.+|+|+++++
T Consensus 270 ~~~~Ig~~~~I~~~~i~~~~~Ig~~~~i~~~~i~~s~i~~~-------------------~~i~~~~~~~~~~ii~~~~~ 330 (353)
T TIGR01208 270 GPAVIGEDCIIENSYIGPYTSIGEGVVIRDAEVEHSIVLDE-------------------SVIEGVQARIVDSVIGKKVR 330 (353)
T ss_pred CCcEECCCCEEcCcEECCCCEECCCCEEeeeEEEeeEEcCC-------------------CEEcCCcceeecCEEcCCCE
Confidence 556666 3555566666666666666655 4444444 677776 4777888888888
Q ss_pred ECCCcEEeC
Q 009720 484 IGKDVVIVN 492 (527)
Q Consensus 484 Ig~~~~i~~ 492 (527)
|++++.|.+
T Consensus 331 i~~~~~~~~ 339 (353)
T TIGR01208 331 IKGNRRRPG 339 (353)
T ss_pred ECCCccccc
Confidence 888887764
No 12
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=1e-42 Score=375.65 Aligned_cols=390 Identities=21% Similarity=0.297 Sum_probs=277.4
Q ss_pred CCceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCcccC
Q 009720 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFG 171 (527)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~ 171 (527)
|++++|||||||.|+||++ .+||||+|++|+ |||+|+|+++.++|++++++++++..+++.+|+.+.
T Consensus 1 m~~~~avIlAaG~g~Rl~~---~~pK~l~pi~g~-pli~~~l~~l~~~gi~~iiiv~~~~~~~i~~~~~~~--------- 67 (459)
T PRK14355 1 MNNLAAIILAAGKGTRMKS---DLVKVMHPLAGR-PMVSWPVAAAREAGAGRIVLVVGHQAEKVREHFAGD--------- 67 (459)
T ss_pred CCcceEEEEcCCCCcccCC---CCCceeceeCCc-cHHHHHHHHHHhcCCCeEEEEECCCHHHHHHHhccC---------
Confidence 5678999999999999974 689999999999 999999999999999999999999988887777421
Q ss_pred CCeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce--eecCCHHHHHHHHHHcCCcEEEEEE
Q 009720 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCA 249 (527)
Q Consensus 172 ~~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~--l~~~dl~~ll~~h~~~~ad~tv~~~ 249 (527)
..+.++...+ ++||+++++.+++++++ ..++|++++||+ +...++.++++.|.+.++++++...
T Consensus 68 -~~i~~~~~~~---------~~Gt~~al~~a~~~l~~----~~~~vlv~~gD~p~~~~~~i~~l~~~~~~~~~~~~v~~~ 133 (459)
T PRK14355 68 -GDVSFALQEE---------QLGTGHAVACAAPALDG----FSGTVLILCGDVPLLRAETLQGMLAAHRATGAAVTVLTA 133 (459)
T ss_pred -CceEEEecCC---------CCCHHHHHHHHHHHhhc----cCCcEEEEECCccCcCHHHHHHHHHHHHhcCCcEEEEEE
Confidence 0144432211 25999999999998862 247899999998 4467899999999888888888887
Q ss_pred EcCCCCCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCCC-
Q 009720 250 AVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT- 328 (527)
Q Consensus 250 ~~~~~~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~~- 328 (527)
+.++ +..|+.+.+|++|+|..+.|||...... ..++++++|+|+|++++|.+++++..+.
T Consensus 134 ~~~~--~~~~g~v~~d~~g~v~~~~ek~~~~~~~-----------------~~~~~~~~Giy~~~~~~l~~~l~~~~~~~ 194 (459)
T PRK14355 134 RLEN--PFGYGRIVRDADGRVLRIVEEKDATPEE-----------------RSIREVNSGIYCVEAAFLFDAIGRLGNDN 194 (459)
T ss_pred EcCC--CCcCCEEEEcCCCCEEEEEEcCCCChhH-----------------hhccEEEEEEEEEeHHHHHHHHHHcCccc
Confidence 7765 4579999999899999999987432100 0236789999999999876667654332
Q ss_pred --CCchhhhhHHhhhhc-CceEEEEecce--EEecCCHHHHHHHHHHhhccCC------CCccCCCCC-CCCCCCccCCC
Q 009720 329 --SNDFGSEIIPAAIME-HDVQAYIFRDY--WEDIGTIKSFYEANMALTKESP------AFHFYDPKT-PFYTSPRFLPP 396 (527)
Q Consensus 329 --~~d~~~dii~~li~~-~~V~~~~~~g~--w~dIgt~~d~~~An~~ll~~~~------~~~~~~~~~-~i~~~~~~~~p 396 (527)
...+..++++.++++ .++.+|.+++| |.|+|||++|++|++.+..... ...++++.. .+...+.+.++
T Consensus 195 ~~~e~~~~d~i~~l~~~g~~v~~~~~~~~~~~~~i~~~~~~~~a~~~l~~~~~~~~~~~~~~~i~~~~~~i~~~v~ig~~ 274 (459)
T PRK14355 195 AQGEYYLTDIVAMAAAEGLRCLAFPVADPDEIMGVNDRAQLAEAARVLRRRINRELMLAGVTLIDPETTYIDRGVVIGRD 274 (459)
T ss_pred cCCceeHHHHHHHHHHCCCeEEEEEcCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEECCCceEECCCeEEcCC
Confidence 234567999999987 57999999988 9999999999999876654321 112344443 34455555566
Q ss_pred eeeec-eee-eeeEECCCCEEc-ceeEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhH--HhhhcCCcc--------
Q 009720 397 TKIDN-CRI-KDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEI--ASLLAEGKV-------- 463 (527)
Q Consensus 397 ~~i~~-~~i-~~s~I~~g~~I~-~~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~--~~~~~~~~~-------- 463 (527)
+.|.. |.| .+++||++|+|+ ++.|.+|+||++|+|+++|+|.++++..+.+......+ .+.++++.+
T Consensus 275 ~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~~~ 354 (459)
T PRK14355 275 TTIYPGVCISGDTRIGEGCTIEQGVVIKGCRIGDDVTVKAGSVLEDSVVGDDVAIGPMAHLRPGTELSAHVKIGNFVETK 354 (459)
T ss_pred CEEeCCcEEeCCCEECCCCEECCCCEEeCCEEcCCCEECCCeEEeCCEECCCCEECCCCEECCCCEeCCCCEECCCcccc
Confidence 66643 555 468888888888 47788889999999988888887766655332221111 112222200
Q ss_pred ceEeCCCcEE------eeeEEcCCCEECCCcEEeCCCCcCC-CccCCCceEEecCe-----EEEccCCEeCCCccC
Q 009720 464 PIGVGRNTKI------RNCIIDKNVKIGKDVVIVNKDDVQE-ADRPELGFYIRSGI-----TIIMEKATIEDGMVI 527 (527)
Q Consensus 464 ~~~Ig~~~~I------~~~iI~~~~~Ig~~~~i~~~~~v~~-~~~~~~~~~i~~g~-----~vi~~~~~I~~g~vi 527 (527)
++.||+++++ .+|.|++++.||.++++.|.++... ...++++++|..+. +.||++++|++|++|
T Consensus 355 ~~~ig~~~~~~~~~~ig~~~ig~~~~ig~~~~~~~~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~i~a~s~v 430 (459)
T PRK14355 355 KIVMGEGSKASHLTYLGDATIGRNVNIGCGTITCNYDGVKKHRTVIEDDVFVGSDVQFVAPVTVGRNSLIAAGTTV 430 (459)
T ss_pred CCEECCCceeeeeccccCCEECCCCEEccceeecCcCCccccCcEecCCeEEcCCCEEeCCcEECCCCEECCCCEE
Confidence 0233333333 3578888888888888876544332 23445555554443 446888888888764
No 13
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=9.6e-43 Score=378.03 Aligned_cols=388 Identities=19% Similarity=0.234 Sum_probs=282.7
Q ss_pred CCceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCcccC
Q 009720 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFG 171 (527)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~ 171 (527)
+..+.+||||||+||||+| .+||+|+|++|+ |||+|+++++.++|+++++|++++..+++.+++.. + .
T Consensus 2 ~~~~~avILAaG~gtRm~~---~~pK~llpi~gk-pli~~~l~~l~~~g~~~iivvv~~~~~~i~~~~~~-~-------~ 69 (482)
T PRK14352 2 PRPTAVIVLAAGAGTRMRS---DTPKVLHTLAGR-SMLGHVLHAAAGLAPQHLVVVVGHDRERVAPAVAE-L-------A 69 (482)
T ss_pred CCCceEEEEcCCCCCcCCC---CCCceeceeCCc-cHHHHHHHHHHhcCCCcEEEEECCCHHHHHHHhhc-c-------C
Confidence 4567899999999999987 589999999999 99999999999999999999999988777766641 1 0
Q ss_pred CCeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-ee-cCCHHHHHHHHHHcCCcEEEEEE
Q 009720 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LY-RMDYMDFIQSHVDRDADITISCA 249 (527)
Q Consensus 172 ~~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~-l~-~~dl~~ll~~h~~~~ad~tv~~~ 249 (527)
..+.++... ++.||+++++.++.++.+ ...++|++++||+ ++ ..++.++++.|++.++++++++.
T Consensus 70 -~~~~~~~~~---------~~~Gt~~si~~al~~l~~---~~~~~vlV~~gD~P~~~~~~l~~li~~~~~~~~~~~v~~~ 136 (482)
T PRK14352 70 -PEVDIAVQD---------EQPGTGHAVQCALEALPA---DFDGTVVVTAGDVPLLDGETLADLVATHTAEGNAVTVLTT 136 (482)
T ss_pred -CccEEEeCC---------CCCCcHHHHHHHHHHhcc---CCCCeEEEEeCCeeccCHHHHHHHHHHHHhcCCeEEEEEe
Confidence 012333211 236999999999988852 1246799999998 33 56799999999888888888877
Q ss_pred EcCCCCCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCCC-
Q 009720 250 AVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT- 328 (527)
Q Consensus 250 ~~~~~~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~~- 328 (527)
+.++ +..||.+..|++|+|.+|.|||.....+ .....+++|+|+|++++|..+++...+.
T Consensus 137 ~~~~--p~~yg~~~~~~~g~V~~~~EKp~~~~~~-----------------~~~~~~~~Giy~f~~~~l~~~~~~~~~~~ 197 (482)
T PRK14352 137 TLDD--PTGYGRILRDQDGEVTAIVEQKDATPSQ-----------------RAIREVNSGVYAFDAAVLRSALARLSSDN 197 (482)
T ss_pred ecCC--CCCCCEEEECCCCCEEEEEECCCCCHHH-----------------hhcceEEEEEEEEEHHHHHHHHHhhCccc
Confidence 7665 5679999888899999999998753210 0124689999999999997777654432
Q ss_pred --CCchhhhhHHhhhhc-CceEEEEecceEEecCCHHHH------HHHHHHhhccC---------CCCccCCCCCCCCCC
Q 009720 329 --SNDFGSEIIPAAIME-HDVQAYIFRDYWEDIGTIKSF------YEANMALTKES---------PAFHFYDPKTPFYTS 390 (527)
Q Consensus 329 --~~d~~~dii~~li~~-~~V~~~~~~g~w~dIgt~~d~------~~An~~ll~~~---------~~~~~~~~~~~i~~~ 390 (527)
...+.+|+++.++++ .+|++|.+++||.|+|+++++ ..+|..++... |...++++...+...
T Consensus 198 ~~~e~~l~d~i~~l~~~g~~V~~~~~~g~w~~~g~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~v~ig~~ 277 (482)
T PRK14352 198 AQGELYLTDVLAIAREAGHRVGAHHADDSAEVAGVNDRVQLAALGAELNRRIVEAWMRAGVTIVDPATTWIDVDVTIGRD 277 (482)
T ss_pred cCCcEeHHHHHHHHHHCCCeEEEEecCCcceEEcCCCHHHHHHHHHHHHHHHHHHHHhCCCEEECCCeEEEeCCEEECCC
Confidence 234568999999988 589999999999999999888 55555544331 112233333334334
Q ss_pred CccCCCeee------------e-ceeeeeeEECCCCEEcceeEeecEEcCCcEECCCCEEeeeEEeCCc-ccCchhhH-H
Q 009720 391 PRFLPPTKI------------D-NCRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGAD-YYQTESEI-A 455 (527)
Q Consensus 391 ~~~~~p~~i------------~-~~~i~~s~I~~g~~I~~~~i~~svIg~~~~I~~~~~I~~~~i~~~~-~~~~~~~~-~ 455 (527)
+.+.|++.| . +|.|.+++|+++|.|+++.+.+++||+++.||+++.|...++++.+ ......++ .
T Consensus 278 ~~I~~~~~i~~~v~Ig~~~~I~~~~~i~~~~Ig~~~~i~~~~~~~~iIg~~~~Ig~~~~i~~~~vIg~~~~ig~~~~~~~ 357 (482)
T PRK14352 278 VVIHPGTQLLGRTTIGEDAVVGPDTTLTDVTVGEGASVVRTHGSESEIGAGATVGPFTYLRPGTVLGEEGKLGAFVETKN 357 (482)
T ss_pred cEEeCCcEEeecCEECCCCEECCCCEEecCEECCCCEEeeeeeecCEEcCCCEECCCeEecCCcEEcCCCEECCcEEEcc
Confidence 333333333 2 2555667777777777667778888888888888888755555543 22222222 3
Q ss_pred hhhcCCccceEeCCCcEEeeeEEcCCCEECCCcEEeCCC-------CcCCCccCCCceEEecCeEEEccCCEeCCCccC
Q 009720 456 SLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKD-------DVQEADRPELGFYIRSGITIIMEKATIEDGMVI 527 (527)
Q Consensus 456 ~~~~~~~~~~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~~-------~v~~~~~~~~~~~i~~g~~vi~~~~~I~~g~vi 527 (527)
+.+.++ +.|++.+.+.+|+||+++.||.++++.|.+ .++++++++.++.|..| +.||+++.|++|++|
T Consensus 358 ~~I~~~---~~i~~~~~i~~~~Ig~~~~IG~~~~i~~~~~~~~~~~~IGd~~~iG~~~~i~~~-~~Ig~~~~igags~v 432 (482)
T PRK14352 358 ATIGRG---TKVPHLTYVGDADIGEHSNIGASSVFVNYDGVNKHRTTIGSHVRTGSDTMFVAP-VTVGDGAYTGAGTVI 432 (482)
T ss_pred cEECCC---cEEccCceecccEECCCcEECCCcEEeccccccCCCCeECCCcEECCCCEEeCC-CEECCCcEECCCCEE
Confidence 445555 677777788899999999999999998753 35566666666666666 456999999999864
No 14
>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.2e-44 Score=345.06 Aligned_cols=332 Identities=22% Similarity=0.331 Sum_probs=269.4
Q ss_pred ceEEEEEeCC--CCCccccCccCCCccceeeCCcchhHHHHHHHHHHc-CCCEEEEEeccCchhHHHHHHHhhccCCccc
Q 009720 94 NVAAIILGGG--AGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINS-GINKIFVLTQFNSASLNRHIARTYFGNGTNF 170 (527)
Q Consensus 94 ~m~aVILAaG--~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~-Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~ 170 (527)
+++||||.|| +||||+||+.+.||||+||+|+ |||+|.|+.|.+. |..+|+++.-|..+.+.+|+.+.- + .|
T Consensus 2 ~~~AVIlVGGP~kGTRFRPLSf~vPKPLfpiaG~-pmI~Hhi~ac~qi~~l~eI~LvGFy~e~~f~~fis~~~--~--e~ 76 (407)
T KOG1460|consen 2 KVKAVILVGGPQKGTRFRPLSFNVPKPLFPIAGV-PMIHHHISACKQISGLAEILLVGFYEERVFTDFISAIQ--Q--EF 76 (407)
T ss_pred ceEEEEEecCCCCCccccccccCCCCCccccCCc-chhhhhHHHHhcccchhheeEEecccchHHHHHHHHHH--h--hc
Confidence 4689999999 7999999999999999999999 9999999999885 999999999998888888875321 1 22
Q ss_pred CCCeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeecCCHHHHHHHHHHcCCcEEEEEEE
Q 009720 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAA 250 (527)
Q Consensus 171 ~~~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tv~~~~ 250 (527)
. ..|.++..+.+ .|||+.|+.+++.+- ....+.|+++++|..++.++.+|++.|+..+..+|++...
T Consensus 77 ~-~pvrYL~E~~p---------lGtaGgLyhFrdqIl---~g~ps~vFvlnaDVCcsfPl~~ml~ahr~~g~~~tll~tk 143 (407)
T KOG1460|consen 77 K-VPVRYLREDNP---------LGTAGGLYHFRDQIL---AGSPSAVFVLNADVCCSFPLQDMLEAHRRYGGIGTLLVTK 143 (407)
T ss_pred c-cchhhhccCCC---------CCcccceeehhhHHh---cCCCceEEEEecceecCCcHHHHHHHHhhcCCceEEEEEE
Confidence 2 12555655543 699999999998874 2457899999999999999999999999999999999999
Q ss_pred cCCCCCCCceEEEEC-CCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCC--
Q 009720 251 VGESRASDYGLVKID-NMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP-- 327 (527)
Q Consensus 251 ~~~~~~~~~g~v~~D-~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~-- 327 (527)
+..+.+++||.+..| .+|+|+++.|||...- ++++|+|+|+|++++|+.+ ++.+.
T Consensus 144 vs~e~asnfG~lV~dP~t~evlHYveKPsTfv---------------------Sd~InCGvYlF~~eif~~i-~~v~~q~ 201 (407)
T KOG1460|consen 144 VSREQASNFGCLVEDPSTGEVLHYVEKPSTFV---------------------SDIINCGVYLFTPEIFNAI-AEVYRQR 201 (407)
T ss_pred ecHhHhhccCeeeecCCcCceEEeecCcchhh---------------------hcccceeEEEecHHHHHHH-HHHHHHH
Confidence 998889999988887 6899999999998653 5789999999999998643 22111
Q ss_pred ---------------CCCc---hhhhhHHhhhhcCceEEEEecceEEecCCHHHHHHHHHHhhccCCCCcc-CCCCCCCC
Q 009720 328 ---------------TSND---FGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHF-YDPKTPFY 388 (527)
Q Consensus 328 ---------------~~~d---~~~dii~~li~~~~V~~~~~~g~w~dIgt~~d~~~An~~ll~~~~~~~~-~~~~~~i~ 388 (527)
...| +.+|+++.++..+++|+|..+++|..|.|+.+-+.||..++++....+- .-++. -.
T Consensus 202 ~~~~~~~~~~~~l~~g~~d~irLeqDvlspLag~k~lY~y~t~~fW~QiKtagsal~as~lYLs~yk~t~p~~Lak~-pg 280 (407)
T KOG1460|consen 202 QDLLEVEKDLPLLQPGPADFIRLEQDVLSPLAGSKQLYAYETTDFWSQIKTAGSALYASRLYLSQYKRTHPARLAKG-PG 280 (407)
T ss_pred HhhhhhhhcccccCCCccceEEeechhhhhhcCCCceEEEecccHHHHhccccceeehhhhHHHHHhhcCchhhcCC-CC
Confidence 1123 3468999999999999999999999999999999999999986422110 00010 01
Q ss_pred CCCccCCCeeeeceeeeeeEECCCCEEcceeEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeC
Q 009720 389 TSPRFLPPTKIDNCRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVG 468 (527)
Q Consensus 389 ~~~~~~~p~~i~~~~i~~s~I~~g~~I~~~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig 468 (527)
+.+.+..+++|++ ++.+.+.+.|| .|..||.+++||+|++|.+|+++++ +.|.
T Consensus 281 t~a~IigdVyIhP----sakvhptAkiG----PNVSIga~vrvg~GvRl~~sIIl~d-------------------~ei~ 333 (407)
T KOG1460|consen 281 TQAEIIGDVYIHP----SAKVHPTAKIG----PNVSIGANVRVGPGVRLRESIILDD-------------------AEIE 333 (407)
T ss_pred CCceEEeeeEEcC----cceeCCccccC----CCceecCCceecCCceeeeeeeccC-------------------cEee
Confidence 2233445555554 55666667776 4688999999999999999999998 9999
Q ss_pred CCcEEeeeEEcCCCEECCCcEEeCC
Q 009720 469 RNTKIRNCIIDKNVKIGKDVVIVNK 493 (527)
Q Consensus 469 ~~~~I~~~iI~~~~~Ig~~~~i~~~ 493 (527)
+|+.+-+||||+.+.||+++++...
T Consensus 334 enavVl~sIigw~s~iGrWaRVe~~ 358 (407)
T KOG1460|consen 334 ENAVVLHSIIGWKSSIGRWARVEGI 358 (407)
T ss_pred ccceEEeeeecccccccceeeeccc
Confidence 9999999999999999999999864
No 15
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=4.8e-41 Score=359.38 Aligned_cols=372 Identities=19% Similarity=0.260 Sum_probs=276.6
Q ss_pred ceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCcccCCC
Q 009720 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (527)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~ 173 (527)
+++|||||||.||||+| .+||||+||+|+ |||+|+++.|..+ +++|+|++++..+++.+|+.+.+ .
T Consensus 2 ~~~aiIlAaG~GtRl~~---~~pK~Llpi~gk-Pli~~~i~~l~~~-~~~i~Ivv~~~~~~i~~~~~~~~-~-------- 67 (430)
T PRK14359 2 KLSIIILAAGKGTRMKS---SLPKVLHTICGK-PMLFYILKEAFAI-SDDVHVVLHHQKERIKEAVLEYF-P-------- 67 (430)
T ss_pred CccEEEEcCCCCccCCC---CCCceeCEECCc-cHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHHhcC-C--------
Confidence 36799999999999986 799999999999 9999999999987 78999999999999988885321 1
Q ss_pred eEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeecCCHHHHHHHHHHcCCcEEEEEEEcCC
Q 009720 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGE 253 (527)
Q Consensus 174 ~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tv~~~~~~~ 253 (527)
.++++...+. .+.||+++++.+. ...++||+++||..+. ..+.++.+.+.++++++.+.++++
T Consensus 68 ~v~~~~~~~~-------~~~gt~~al~~~~--------~~~d~vlv~~gD~p~~--~~~~l~~l~~~~~~~~v~~~~~~~ 130 (430)
T PRK14359 68 GVIFHTQDLE-------NYPGTGGALMGIE--------PKHERVLILNGDMPLV--EKDELEKLLENDADIVMSVFHLAD 130 (430)
T ss_pred ceEEEEecCc-------cCCCcHHHHhhcc--------cCCCeEEEEECCccCC--CHHHHHHHHhCCCCEEEEEEEcCC
Confidence 1555442221 2369999997732 1247899999998442 234556666677888888888765
Q ss_pred CCCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCC---CCC
Q 009720 254 SRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP---TSN 330 (527)
Q Consensus 254 ~~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~---~~~ 330 (527)
+..|+.+..| +|+|..+.|||..... . ...+..++|+|+|++++|..+++.... ...
T Consensus 131 --~~~~g~v~~d-~g~v~~i~e~~~~~~~---------------~--~~~~~~~~Giyif~~~~l~~~~~~~~~~~~~~e 190 (430)
T PRK14359 131 --PKGYGRVVIE-NGQVKKIVEQKDANEE---------------E--LKIKSVNAGVYLFDRKLLEEYLPLLKNQNAQKE 190 (430)
T ss_pred --CccCcEEEEc-CCeEEEEEECCCCCcc---------------c--ccceEEEeEEEEEEHHHHHHHHHhcCcccccCc
Confidence 4568988775 6899999998853210 0 013578999999999999876554322 123
Q ss_pred chhhhhHHhhhhc-CceEEEEec-ceEEecCCHHHHHHHHHHhhccCC-C------------CccCCCCCCCCCCCccCC
Q 009720 331 DFGSEIIPAAIME-HDVQAYIFR-DYWEDIGTIKSFYEANMALTKESP-A------------FHFYDPKTPFYTSPRFLP 395 (527)
Q Consensus 331 d~~~dii~~li~~-~~V~~~~~~-g~w~dIgt~~d~~~An~~ll~~~~-~------------~~~~~~~~~i~~~~~~~~ 395 (527)
.+.+++++.+++. .++.+|.++ ++|.||+|++||..|+..+..+.. + -.+.+++..+.....+.+
T Consensus 191 ~~l~d~i~~l~~~g~~v~~~~~~~~~w~dI~t~~dl~~a~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~g~~~ig~ 270 (430)
T PRK14359 191 YYLTDIIALAIEKGETIKAVFVDEENFMGVNSKFELAKAEEIMQERIKKNAMKQGVIMRLPETIYIESGVEFEGECELEE 270 (430)
T ss_pred eehhhHHHHHHHcCCeEEEEEcCCCEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEecCCeeEECCCcEEcCceEECC
Confidence 4567889888877 789999997 589999999999999866654321 1 012233344444445566
Q ss_pred Ceeee-ceeeeeeEECCCCEEcceeEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhH-HhhhcCCccceEeCCCcEE
Q 009720 396 PTKID-NCRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEI-ASLLAEGKVPIGVGRNTKI 473 (527)
Q Consensus 396 p~~i~-~~~i~~s~I~~g~~I~~~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~Ig~~~~I 473 (527)
++.|. ++.|.+++|+++|.|+++.|.+|+||++++|+++|+|+++.+... .++ .+++ ++ +.||++++|
T Consensus 271 ~~~I~~~~~i~~~~i~~~~~I~~~~i~~~~ig~~~~i~~~~~i~~~~ig~~------~~i~~~~~-~~---~~i~~~~~i 340 (430)
T PRK14359 271 GVRILGKSKIENSHIKAHSVIEESIIENSDVGPLAHIRPKSEIKNTHIGNF------VETKNAKL-NG---VKAGHLSYL 340 (430)
T ss_pred CCEECCCeEEEeeEECCCCEEeccEEeCCEECCCCEECCCcEEeccEEcCc------EEEcccEe-cc---ccccccccc
Confidence 66664 477788999999999988899999999999999999987666544 122 2344 56 799999999
Q ss_pred eeeEEcCCCEECCCcEEeCCC-------CcCCCccCCCceEEecCeEEEccCCEeCCCccC
Q 009720 474 RNCIIDKNVKIGKDVVIVNKD-------DVQEADRPELGFYIRSGITIIMEKATIEDGMVI 527 (527)
Q Consensus 474 ~~~iI~~~~~Ig~~~~i~~~~-------~v~~~~~~~~~~~i~~g~~vi~~~~~I~~g~vi 527 (527)
.+|+||+++.||+++++.|.+ .+++++.++.++.|..| +.||++++|++|++|
T Consensus 341 ~d~~Ig~~~~ig~~~~~~~~~~~~~~~~~ig~~~~ig~~~~i~~~-~~ig~~~~i~~g~~v 400 (430)
T PRK14359 341 GDCEIDEGTNIGAGTITCNYDGKKKHKTIIGKNVFIGSDTQLVAP-VNIEDNVLIAAGSTV 400 (430)
T ss_pred cCCEECCCCEECCCceEccccCccCcCCEECCCeEEcCCCEEeCC-cEECCCCEECCCCEE
Confidence 999999999999999998764 35556666666666655 456999999999875
No 16
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=3.8e-41 Score=365.05 Aligned_cols=386 Identities=18% Similarity=0.261 Sum_probs=249.5
Q ss_pred CceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCcccCC
Q 009720 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGD 172 (527)
Q Consensus 93 ~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~ 172 (527)
.+|+|||||||+|+||+| .+||||+|++|+ |||+|+++++.++|+++|+|+++++.+++.+|+. + .+
T Consensus 6 ~~~~avILAaG~gtRl~~---~~pK~llpi~gk-pli~~~l~~l~~~gi~~ivvv~~~~~~~i~~~~~----~----~~- 72 (481)
T PRK14358 6 RPLDVVILAAGQGTRMKS---ALPKVLHPVAGR-PMVAWAVKAARDLGARKIVVVTGHGAEQVEAALQ----G----SG- 72 (481)
T ss_pred CCceEEEECCCCCCcCCC---CCCceecEECCe-eHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhc----c----CC-
Confidence 468999999999999987 489999999999 9999999999999999999999998887776663 1 11
Q ss_pred CeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce--eecCCHHHHHHHHHHcCCcEEEEEEE
Q 009720 173 GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAA 250 (527)
Q Consensus 173 ~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~--l~~~dl~~ll~~h~~~~ad~tv~~~~ 250 (527)
+.++... ++.||+++++.++.+++. ..++|++++||+ +...++.++++.|+++++++|+++.+
T Consensus 73 --i~~v~~~---------~~~Gt~~al~~~~~~l~~----~~~~~lV~~gD~P~i~~~~l~~ll~~~~~~~~~~ti~~~~ 137 (481)
T PRK14358 73 --VAFARQE---------QQLGTGDAFLSGASALTE----GDADILVLYGDTPLLRPDTLRALVADHRAQGSAMTILTGE 137 (481)
T ss_pred --cEEecCC---------CcCCcHHHHHHHHHHhhC----CCCcEEEEeCCeeccCHHHHHHHHHHHHhcCCeEEEEEEE
Confidence 4444321 246999999999888752 235799999998 44667999999999999999998888
Q ss_pred cCCCCCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhC---C
Q 009720 251 VGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRY---P 327 (527)
Q Consensus 251 ~~~~~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~---~ 327 (527)
+++ ++.||++.+|++|+|.+|.|||.....+ .....+++|+|+|+++++ ++++... +
T Consensus 138 ~~~--~~~yG~v~~d~~g~v~~~~Ek~~~~~~~-----------------~~~~~~n~Giyi~~~~~~-~~~~~i~~~~~ 197 (481)
T PRK14358 138 LPD--ATGYGRIVRGADGAVERIVEQKDATDAE-----------------KAIGEFNSGVYVFDARAP-ELARRIGNDNK 197 (481)
T ss_pred cCC--CCCceEEEECCCCCEEEEEECCCCChhH-----------------hhCCeEEEEEEEEchHHH-HHHHhcCCCcc
Confidence 775 4569999999999999999998643210 012468999999997753 2333322 1
Q ss_pred CCCchhhhhHHhhhhc-CceEEEEecceEEecCCHHHHHHHHHH-hhccCCC-------CccCCCCCC-CCCCCccCCCe
Q 009720 328 TSNDFGSEIIPAAIME-HDVQAYIFRDYWEDIGTIKSFYEANMA-LTKESPA-------FHFYDPKTP-FYTSPRFLPPT 397 (527)
Q Consensus 328 ~~~d~~~dii~~li~~-~~V~~~~~~g~w~dIgt~~d~~~An~~-ll~~~~~-------~~~~~~~~~-i~~~~~~~~p~ 397 (527)
....+.+|+++.++++ .++++|.+.++|..++...+++.+++. ++.+... ....+|... +.....+..++
T Consensus 198 ~ge~~l~d~i~~~~~~g~~i~~~~~~~~~~~i~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~Ig~~~ 277 (481)
T PRK14358 198 AGEYYLTDLLGLYRAGGAQVRAFKLSDPDEVLGANDRAGLAQLEATLRRRINEAHMKAGVTLQDPGTILIEDTVTLGRDV 277 (481)
T ss_pred CCeEEHHHHHHHHHHCCCeEEEEecCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEecCCeeeccCCcEECCCC
Confidence 2234567999999987 579999999999888888888777765 4332210 011112111 11111222222
Q ss_pred eeec-eeee-eeEECCCCEEc-ceeEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhH--HhhhcCCccc--------
Q 009720 398 KIDN-CRIK-DAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEI--ASLLAEGKVP-------- 464 (527)
Q Consensus 398 ~i~~-~~i~-~s~I~~g~~I~-~~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~--~~~~~~~~~~-------- 464 (527)
.|.+ |.|. ++.||++|.|+ .|.|.+|+||++|.|+++++|.++++..+.+......+ .+.++++...
T Consensus 278 ~I~~~~~I~~~v~Ig~~~~I~~~~~i~~svI~~~~~I~~~~~i~~~~ig~~~~ig~~~~i~~~~~Ig~~~~Ig~~~~i~~ 357 (481)
T PRK14358 278 TIEPGVLLRGQTRVADGVTIGAYSVVTDSVLHEGAVIKPHSVLEGAEVGAGSDVGPFARLRPGTVLGEGVHIGNFVETKN 357 (481)
T ss_pred EEeCCcEEeCCcEECCCCEECCCCEEeeeEECCCCEEeecceecCCeEeCceEECCccEEcCCcEECCCCEECCCEEECC
Confidence 3321 2221 34455555555 25555556666666665555555444333222222211 1222222000
Q ss_pred ------eEeCCCcEEeeeEEcCCCEECCCcEEeCCCCcCC-CccCCCceEEecCeEEEccCCEeCCCccC
Q 009720 465 ------IGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQE-ADRPELGFYIRSGITIIMEKATIEDGMVI 527 (527)
Q Consensus 465 ------~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~~~v~~-~~~~~~~~~i~~g~~vi~~~~~I~~g~vi 527 (527)
+.||+.+.+.+|.||+|+.||.+++|.|.++... .+.+++++.|..+ ++|..+++||++++|
T Consensus 358 ~~i~~~~~ig~~~~~~~~~ig~~~~ig~~~~i~~~~~~~~~~~~Ig~~~~ig~~-~~i~~~~~Ig~~~~i 426 (481)
T PRK14358 358 ARLDAGVKAGHLAYLGDVTIGAETNVGAGTIVANFDGVNKHQSKVGAGVFIGSN-TTLIAPRVVGDAAFI 426 (481)
T ss_pred ceecCCcccCceEEECCeEEcCCceEcCCEEEeCCCCccCCCCEECCCeEEcCC-CEEcCCcEECCCCEE
Confidence 3334444445666777777777777776554433 2466666666665 444666667666653
No 17
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=1.3e-41 Score=366.65 Aligned_cols=382 Identities=17% Similarity=0.238 Sum_probs=259.1
Q ss_pred CCCceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCccc
Q 009720 91 DPKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNF 170 (527)
Q Consensus 91 ~~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~ 170 (527)
.|++|++||||||.||||++ .+||||+|++|+ |||+|+++.+.++|+++|++++++..+++.+|+. .
T Consensus 2 ~~~~~~aiIlAaG~gtRl~~---~~pK~l~~i~gk-pli~~~i~~l~~~gi~~i~vv~~~~~~~i~~~~~-----~---- 68 (456)
T PRK09451 2 LNSAMSVVILAAGKGTRMYS---DLPKVLHTLAGK-PMVQHVIDAANELGAQHVHLVYGHGGDLLKQTLA-----D---- 68 (456)
T ss_pred CCCCceEEEEcCCCCCcCCC---CCChhcceeCCh-hHHHHHHHHHHhcCCCcEEEEECCCHHHHHHhhc-----c----
Confidence 46679999999999999983 699999999999 9999999999999999999999998777766653 1
Q ss_pred CCCeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce--eecCCHHHHHHHHHHcCCcEEEEE
Q 009720 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISC 248 (527)
Q Consensus 171 ~~~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~--l~~~dl~~ll~~h~~~~ad~tv~~ 248 (527)
..++++.... ..||+++++.++.+++ ..+.||+++||+ +...++.++++.|.+.+ +++++
T Consensus 69 --~~~~~i~~~~---------~~Gt~~al~~a~~~l~-----~~~~vlV~~gD~P~i~~~~i~~l~~~~~~~~--~~i~~ 130 (456)
T PRK09451 69 --EPLNWVLQAE---------QLGTGHAMQQAAPFFA-----DDEDILMLYGDVPLISVETLQRLRDAKPQGG--IGLLT 130 (456)
T ss_pred --CCcEEEECCC---------CCCcHHHHHHHHHhhc-----cCCcEEEEeCCcccCCHHHHHHHHHHhhcCC--EEEEE
Confidence 1134433221 2599999999988874 236899999998 45678999998886544 45666
Q ss_pred EEcCCCCCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCCC
Q 009720 249 AAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT 328 (527)
Q Consensus 249 ~~~~~~~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~~ 328 (527)
.+.++ ++.||++.. ++++|.+|.|||..... ...+.++++|+|+|+++.|.++++...+.
T Consensus 131 ~~~~~--~~~yG~v~~-~~g~V~~~~EKp~~~~~-----------------~~~~~~~~~GiYi~~~~~l~~~l~~~~~~ 190 (456)
T PRK09451 131 VKLDN--PTGYGRITR-ENGKVVGIVEQKDATDE-----------------QRQIQEINTGILVANGADLKRWLAKLTNN 190 (456)
T ss_pred EEcCC--CCCceEEEe-cCCeEEEEEECCCCChH-----------------HhhccEEEEEEEEEEHHHHHHHHHhcCCc
Confidence 66655 467998754 57899999999863211 00135789999999999988777764432
Q ss_pred ---CCchhhhhHHhhhhc-CceEEEE------ecce--EEecCCHHHHHHHHHH--hhcc-----CCCCc----------
Q 009720 329 ---SNDFGSEIIPAAIME-HDVQAYI------FRDY--WEDIGTIKSFYEANMA--LTKE-----SPAFH---------- 379 (527)
Q Consensus 329 ---~~d~~~dii~~li~~-~~V~~~~------~~g~--w~dIgt~~d~~~An~~--ll~~-----~~~~~---------- 379 (527)
...+..|+++.++++ .++.+|. +.|| |.|++++++|+++|+. ++.. .|...
T Consensus 191 ~~~~e~~l~d~i~~~i~~g~~v~~~~~~~~~~~~G~~~~~di~~~~~y~~~~~~~~~l~~~~~~~~p~~~~~~~~~~ig~ 270 (456)
T PRK09451 191 NAQGEYYITDIIALAHQEGREIVAVHPQRLSEVEGVNNRLQLARLERVYQAEQAEKLLLAGVMLRDPARFDLRGTLTHGR 270 (456)
T ss_pred cccCceeHHHHHHHHHHCCCeEEEEecCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEeCCCEEEECCcEEECC
Confidence 335678999999988 6899996 4676 7889999999999852 3221 12110
Q ss_pred --cCCCCCCCCCCCccCCCeeee-ceeeeeeEECCCCEEcc-eeEeecEEcCCcEECCCCEEe-eeEEeCCcccCchhhH
Q 009720 380 --FYDPKTPFYTSPRFLPPTKID-NCRIKDAIISHGCFLRE-CTVEHSIVGERSRLDYGVELK-DTVMLGADYYQTESEI 454 (527)
Q Consensus 380 --~~~~~~~i~~~~~~~~p~~i~-~~~i~~s~I~~g~~I~~-~~i~~svIg~~~~I~~~~~I~-~~~i~~~~~~~~~~~~ 454 (527)
.+.+...+.....+.+++.|. +|.|.+++|+++|+|++ +.+.+|+||++|.|++++.|. ++.+.++.....+.++
T Consensus 271 ~~~I~~~~~i~~~v~ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~ig~~~~i 350 (456)
T PRK09451 271 DVEIDTNVIIEGNVTLGNRVKIGAGCVLKNCVIGDDCEISPYSVVEDANLGAACTIGPFARLRPGAELAEGAHVGNFVEM 350 (456)
T ss_pred CCEEcCCeEEecCcEECCCCEECCCceEecCEEcCCCEEcCCEEEeCCccCCCcEecCceEEeCCCEECCCceeccceee
Confidence 111222222222333344442 25556677777777763 566666777777777666665 3333322222222222
Q ss_pred -HhhhcCCccceEeCCCcEEeeeEEcCCCEECCCcEEeCCCC-------cCCCccCCCceEEecCeEEEccCCEeCCCcc
Q 009720 455 -ASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDD-------VQEADRPELGFYIRSGITIIMEKATIEDGMV 526 (527)
Q Consensus 455 -~~~~~~~~~~~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~~~-------v~~~~~~~~~~~i~~g~~vi~~~~~I~~g~v 526 (527)
.+.+++| +.+++.+.+.+|.||+++.||+++++.+.++ +++++.++.++.|..| +.|+.+++|++|++
T Consensus 351 ~~~~i~~~---~~~~~~~~~g~~~ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~~-~~ig~~~~i~~gs~ 426 (456)
T PRK09451 351 KKARLGKG---SKAGHLTYLGDAEIGDNVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQLVAP-VTVGKGATIGAGTT 426 (456)
T ss_pred eceeeCCC---CccCccccccccEECCCCEEcCCeEEecccCcccCCCEECCCcEECCCCEEeCC-cEECCCCEECCCCE
Confidence 2334444 4555555666789999999999999887544 4444444444444444 24588888888876
Q ss_pred C
Q 009720 527 I 527 (527)
Q Consensus 527 i 527 (527)
|
T Consensus 427 v 427 (456)
T PRK09451 427 V 427 (456)
T ss_pred E
Confidence 4
No 18
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=100.00 E-value=3.1e-41 Score=362.71 Aligned_cols=379 Identities=20% Similarity=0.259 Sum_probs=255.7
Q ss_pred eEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCcccCCCe
Q 009720 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (527)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~~ 174 (527)
|++||||||.||||+| .+||||+|++|+ |||+|+++++.++|+++++|++++..+++.+|+. .+ +
T Consensus 1 m~aiIlAaG~g~R~~~---~~pK~l~~i~gk-pli~~~l~~l~~~g~~~iiiv~~~~~~~i~~~~~-~~-------~--- 65 (451)
T TIGR01173 1 LSVVILAAGKGTRMKS---DLPKVLHPLAGK-PMLEHVIDAARALGPQKIHVVYGHGAEQVRKALA-NR-------D--- 65 (451)
T ss_pred CeEEEEcCCCCcccCC---CCchhhceeCCc-cHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhc-CC-------C---
Confidence 7899999999999997 699999999999 9999999999999999999999998888877764 11 1
Q ss_pred EEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce--eecCCHHHHHHHHHHcCCcEEEEEEEcC
Q 009720 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAAVG 252 (527)
Q Consensus 175 V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~--l~~~dl~~ll~~h~~~~ad~tv~~~~~~ 252 (527)
+.++...+ +.|++++++.++.++++ .++|++++||+ +...++.++++.|.+. ..++++.+.+
T Consensus 66 i~~~~~~~---------~~G~~~ai~~a~~~l~~-----~~~~lv~~~D~p~i~~~~~~~l~~~~~~~--~~~~~~~~~~ 129 (451)
T TIGR01173 66 VNWVLQAE---------QLGTGHAVLQALPFLPD-----DGDVLVLYGDVPLISAETLERLLEAHRQN--GITLLTAKLP 129 (451)
T ss_pred cEEEEcCC---------CCchHHHHHHHHHhcCC-----CCcEEEEECCcCCcCHHHHHHHHHHHhhC--CEEEEEEecC
Confidence 33332221 24999999999988852 36899999998 3356789999988664 4677777665
Q ss_pred CCCCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCCC---C
Q 009720 253 ESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT---S 329 (527)
Q Consensus 253 ~~~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~~---~ 329 (527)
+ +..|+.+..|++|+|..|.|||...... ...+.+++|+|+|++++|..+++...+. .
T Consensus 130 ~--~~~~g~v~~d~~g~v~~~~ek~~~~~~~-----------------~~~~~~~~G~y~~~~~~l~~~l~~~~~~~~~~ 190 (451)
T TIGR01173 130 D--PTGYGRIIRENDGKVTAIVEDKDANAEQ-----------------KAIKEINTGVYVFDGAALKRWLPKLSNNNAQG 190 (451)
T ss_pred C--CCCCCEEEEcCCCCEEEEEEcCCCChHH-----------------hcCcEEEEEEEEEeHHHHHHHHHhcccccccC
Confidence 3 5569999999889999999997532100 0125789999999999976666654332 2
Q ss_pred CchhhhhHHhhhhc-CceEEEEecce--EEecCCHHHHHHHHHHhhccCCC------Ccc-------CCC------CCCC
Q 009720 330 NDFGSEIIPAAIME-HDVQAYIFRDY--WEDIGTIKSFYEANMALTKESPA------FHF-------YDP------KTPF 387 (527)
Q Consensus 330 ~d~~~dii~~li~~-~~V~~~~~~g~--w~dIgt~~d~~~An~~ll~~~~~------~~~-------~~~------~~~i 387 (527)
..+..++++.++++ .++++|.++++ |.+++|++++..++..+..+.+. ..+ ..+ ...|
T Consensus 191 e~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~i~t~~dl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~ig~~~~i 270 (451)
T TIGR01173 191 EYYLTDVIALAVADGETVRAVQVDDSDEVLGVNDRLQLAQLERILQRRIAKKLLLAGVTLRDPARFDIRGTVEIGRDVEI 270 (451)
T ss_pred cEeHHHHHHHHHHCCCeEEEEEcCChhheecCCCHHHHHHHHHHHHHHHHHHHHhCCCEEecCCeEEECCccEECCCCEE
Confidence 23467899999877 57999999988 99999999999887655432110 001 111 1222
Q ss_pred CCCCccCCCe------eee-ceeeeeeEECCCCEEc-ceeEeecEEcCCcEECCCCEEeeeEEeCCc-ccCchhhH-Hhh
Q 009720 388 YTSPRFLPPT------KID-NCRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGAD-YYQTESEI-ASL 457 (527)
Q Consensus 388 ~~~~~~~~p~------~i~-~~~i~~s~I~~g~~I~-~~~i~~svIg~~~~I~~~~~I~~~~i~~~~-~~~~~~~~-~~~ 457 (527)
...+.+.+++ .|. .+.|.+++|+++|.|+ ++.|.+++||.+|+|+++++|.+..+++++ ......++ .+.
T Consensus 271 ~~~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~ 350 (451)
T TIGR01173 271 DPNVILEGKVKIGDDVVIGPGCVIKNSVIGSNVVIKAYSVLEGSEIGEGCDVGPFARLRPGSVLGAGVHIGNFVETKNAR 350 (451)
T ss_pred cCCeEEeCceEECCCCEECCCcEEeeeEecCCCEEeeecEEecccccCCcEECCeeEECCCCEECCCcEEccceeecCcE
Confidence 2222222222 221 1444556666666666 356666666666666666666532222221 11111111 133
Q ss_pred hcCCccceEeCCCcEEeeeEEcCCCEECCCcEEeCCCC-------cCCCccCCCceEEecCeEEEccCCEeCCCccC
Q 009720 458 LAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDD-------VQEADRPELGFYIRSGITIIMEKATIEDGMVI 527 (527)
Q Consensus 458 ~~~~~~~~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~~~-------v~~~~~~~~~~~i~~g~~vi~~~~~I~~g~vi 527 (527)
++++ +.|++.+.|.+|.||+++.||+++++.|.++ ++++++++.++.|..| +.||++++|++|++|
T Consensus 351 ig~~---~~i~~~~~i~~~~Ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~~-~~ig~~~~i~~g~~v 423 (451)
T TIGR01173 351 IGKG---SKAGHLSYLGDAEIGSNVNIGAGTITCNYDGANKHKTIIGDGVFIGSNTQLVAP-VKVGDGATIAAGSTV 423 (451)
T ss_pred ECCC---cEecceeeEeeeEEcCCcEECCCeEEeCcccccCCCCEECCCcEECCCCEEECC-cEECCCCEEccCCEE
Confidence 3444 4455555566788888888999888887443 3444444555545444 456999999999875
No 19
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=6e-41 Score=341.68 Aligned_cols=386 Identities=22% Similarity=0.281 Sum_probs=292.5
Q ss_pred ceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCcccCCC
Q 009720 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (527)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~ 173 (527)
++.+||||||+||||. +..||-|.|++|+ ||++|+++.+...+.+++.+|+++..+.+...+.+..
T Consensus 2 ~~~~vILAAGkGTRMk---S~lPKVLH~vaGk-pMl~hVi~~a~~l~~~~i~vVvGh~ae~V~~~~~~~~---------- 67 (460)
T COG1207 2 SLSAVILAAGKGTRMK---SDLPKVLHPVAGK-PMLEHVIDAARALGPDDIVVVVGHGAEQVREALAERD---------- 67 (460)
T ss_pred CceEEEEecCCCcccc---CCCcccchhccCc-cHHHHHHHHHhhcCcceEEEEEcCCHHHHHHHhcccc----------
Confidence 4689999999999998 5699999999999 9999999999999999999999999999987775210
Q ss_pred eEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-eec-CCHHHHHHHHHHcCCcEEEEEEEc
Q 009720 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYR-MDYMDFIQSHVDRDADITISCAAV 251 (527)
Q Consensus 174 ~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~-l~~-~dl~~ll~~h~~~~ad~tv~~~~~ 251 (527)
.++++. |.. .+||++|+.+++++|.+ ....++||++||+ |.. ..+.+|++.|...++.++++....
T Consensus 68 ~v~~v~--Q~e-------qlGTgHAV~~a~~~l~~---~~~g~vLVl~GD~PLit~~TL~~L~~~~~~~~~~~tvLt~~~ 135 (460)
T COG1207 68 DVEFVL--QEE-------QLGTGHAVLQALPALAD---DYDGDVLVLYGDVPLITAETLEELLAAHPAHGAAATVLTAEL 135 (460)
T ss_pred CceEEE--ecc-------cCChHHHHHhhhhhhhc---CCCCcEEEEeCCcccCCHHHHHHHHHhhhhcCCceEEEEEEc
Confidence 133322 322 26999999999999942 2345799999998 444 457889999999999999999998
Q ss_pred CCCCCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCC---C
Q 009720 252 GESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP---T 328 (527)
Q Consensus 252 ~~~~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~---~ 328 (527)
++ |..||-+..+++|+|+.|.|.....+. ++.-..+++|+|+|+...|.+.|..... +
T Consensus 136 ~d--P~GYGRIvr~~~g~V~~IVE~KDA~~e-----------------ek~I~eiNtGiy~f~~~~L~~~L~~l~nnNaq 196 (460)
T COG1207 136 DD--PTGYGRIVRDGNGEVTAIVEEKDASEE-----------------EKQIKEINTGIYAFDGAALLRALPKLSNNNAQ 196 (460)
T ss_pred CC--CCCcceEEEcCCCcEEEEEEcCCCCHH-----------------HhcCcEEeeeEEEEcHHHHHHHHHHhcccccc
Confidence 88 678999999999999999987654321 1223578999999999988877776543 2
Q ss_pred CCchhhhhHHhhhhc-CceEEEEecce--EEecCCHHHHHHHHHHhhccC------CCCccCCCC-------CCCCCCCc
Q 009720 329 SNDFGSEIIPAAIME-HDVQAYIFRDY--WEDIGTIKSFYEANMALTKES------PAFHFYDPK-------TPFYTSPR 392 (527)
Q Consensus 329 ~~d~~~dii~~li~~-~~V~~~~~~g~--w~dIgt~~d~~~An~~ll~~~------~~~~~~~~~-------~~i~~~~~ 392 (527)
.+.|.+|++..+..+ .+|.++..+++ ...+++-..+-+++..+-++. ....+.||. ..+.....
T Consensus 197 gEYYLTDvI~i~~~~g~~V~a~~~~d~~E~~GVN~R~qLa~~e~~~q~r~~~~~m~~GVtl~dP~t~~i~~dv~ig~Dvv 276 (460)
T COG1207 197 GEYYLTDVIAIARNEGEKVRAVHVDDEEEVLGVNDRVQLAEAERIMQRRIAEKLMLAGVTLIDPATTYIRGDVEIGRDVV 276 (460)
T ss_pred CcEeHHHHHHHHHhCCCeEEEEecCchHHhcCcCcHHHHHHHHHHHHHHHHHHHHHcCcEEeCCCeEEEcCcEEECCceE
Confidence 456789999888766 78999999877 468889888888887765543 222344443 33333344
Q ss_pred cCCCeee------------ec-eeeeeeEECCCCEEcc-eeEeecEEcCCcEECCCCEEeeeEEeCC-cccCchhhH-Hh
Q 009720 393 FLPPTKI------------DN-CRIKDAIISHGCFLRE-CTVEHSIVGERSRLDYGVELKDTVMLGA-DYYQTESEI-AS 456 (527)
Q Consensus 393 ~~~p~~i------------~~-~~i~~s~I~~g~~I~~-~~i~~svIg~~~~I~~~~~I~~~~i~~~-~~~~~~~~~-~~ 456 (527)
+.|++.+ .+ |.|+||.|+++|.|.. +.+++|.||++|.||+.++|.....+++ .-..-+.|+ .+
T Consensus 277 I~p~v~l~G~t~ig~~v~iGpg~~i~ds~I~~~a~I~~~S~ie~s~vg~~~~VGPfA~LRPg~~L~~~~hIGNFVEvK~a 356 (460)
T COG1207 277 IEPNVILEGNTVIGDNVVIGPGSVIKDSVIGDNAVIKAYSVIEGSTVGEGATVGPFARLRPGAVLGADVHIGNFVEVKKA 356 (460)
T ss_pred EecCcEEeeeEEECCceEECCCcEEEeeEEcCCCEEEecceeeccEecCCcccCCccccCCcCcccCCCeEeeeEEEecc
Confidence 4443332 11 4456667777777765 6666777777777776666665544444 222223343 46
Q ss_pred hhcCCccceEeCCCcEEeeeEEcCCCEECCCcEEeCCCCcCCC-ccCCCceEEecCeE-----EEccCCEeCCCccC
Q 009720 457 LLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEA-DRPELGFYIRSGIT-----IIMEKATIEDGMVI 527 (527)
Q Consensus 457 ~~~~~~~~~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~~~v~~~-~~~~~~~~i~~g~~-----vi~~~~~I~~g~vi 527 (527)
-+++| +.+++-++|.+|.||.++.||++++..|+|+.... +.+|++++|+|... .||++++|++||+|
T Consensus 357 ~ig~g---sKa~HLtYlGDA~iG~~~NiGAGtItcNYDG~nK~~T~IGd~vFiGSns~LVAPV~IGd~a~iaAGStI 430 (460)
T COG1207 357 TIGKG---SKAGHLTYLGDAEIGENVNIGAGTITCNYDGKNKFKTIIGDNVFIGSNSQLVAPVTIGDGATIAAGSTI 430 (460)
T ss_pred cccCC---ccccceeeeccceecCCceeccceEEEcCCCcccceeeecCCcEEccCCcEEeeEEecCCcEEcccceE
Confidence 67777 78888899999999999999999999999999874 79999999988864 48999999999986
No 20
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=3.3e-40 Score=354.74 Aligned_cols=371 Identities=18% Similarity=0.217 Sum_probs=258.6
Q ss_pred CCCCceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCcc
Q 009720 90 VDPKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTN 169 (527)
Q Consensus 90 ~~~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~ 169 (527)
+.|+++.|||||||.|+||++ .+||+|+|++|+ |||+|+++++.++|+++|+|++++..+++.+++.+ +
T Consensus 1 ~~~~~~~aiILAaG~gsR~~~---~~pK~ll~v~gk-pli~~~l~~l~~~gi~~ivvv~~~~~~~i~~~~~~-~------ 69 (446)
T PRK14353 1 MTDRTCLAIILAAGEGTRMKS---SLPKVLHPVAGR-PMLAHVLAAAASLGPSRVAVVVGPGAEAVAAAAAK-I------ 69 (446)
T ss_pred CccccceEEEEcCCCCCccCC---CCCcccCEECCc-hHHHHHHHHHHhCCCCcEEEEECCCHHHHHHHhhc-c------
Confidence 357789999999999999984 589999999999 99999999999999999999999988888777642 1
Q ss_pred cCCCeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-ee-cCCHHHHHHHHHHcCCcEEEE
Q 009720 170 FGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LY-RMDYMDFIQSHVDRDADITIS 247 (527)
Q Consensus 170 ~~~~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~-l~-~~dl~~ll~~h~~~~ad~tv~ 247 (527)
.. .+.++... +..|++++++.++.+++. ..++|++++||+ ++ ..++..+++ |.+.+++.++.
T Consensus 70 -~~-~~~~~~~~---------~~~G~~~sl~~a~~~l~~----~~~~~lv~~~D~P~i~~~~l~~l~~-~~~~~~~~~i~ 133 (446)
T PRK14353 70 -AP-DAEIFVQK---------ERLGTAHAVLAAREALAG----GYGDVLVLYGDTPLITAETLARLRE-RLADGADVVVL 133 (446)
T ss_pred -CC-CceEEEcC---------CCCCcHHHHHHHHHHHhc----cCCCEEEEeCCcccCCHHHHHHHHH-hHhcCCcEEEE
Confidence 10 12222211 125999999999888752 247899999998 44 445778887 44557788888
Q ss_pred EEEcCCCCCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCC
Q 009720 248 CAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP 327 (527)
Q Consensus 248 ~~~~~~~~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~ 327 (527)
+.+..+ +..||.+.. ++++|..+.|||.....+ ....++++|+|+|+++.|.++++....
T Consensus 134 ~~~~~~--~~~~g~~~~-~~g~v~~~~ek~~~~~~~-----------------~~~~~~~~Giy~~~~~~l~~~l~~~~~ 193 (446)
T PRK14353 134 GFRAAD--PTGYGRLIV-KGGRLVAIVEEKDASDEE-----------------RAITLCNSGVMAADGADALALLDRVGN 193 (446)
T ss_pred EEEeCC--CCcceEEEE-CCCeEEEEEECCCCChHH-----------------hhceEEEEEEEEEEHHHHHHHHHhhcc
Confidence 777654 467988877 578999999998642110 012578999999999887667665432
Q ss_pred C---CCchhhhhHHhhhhc-CceEEEEec-ceEEecCCHHHHHHHHHHhhcc---------C----CCCccCCCCCCCCC
Q 009720 328 T---SNDFGSEIIPAAIME-HDVQAYIFR-DYWEDIGTIKSFYEANMALTKE---------S----PAFHFYDPKTPFYT 389 (527)
Q Consensus 328 ~---~~d~~~dii~~li~~-~~V~~~~~~-g~w~dIgt~~d~~~An~~ll~~---------~----~~~~~~~~~~~i~~ 389 (527)
. ...+..++++.+++. .+++++.++ ++|.||+||+||..|+..+..+ . +...++.+.+.|.+
T Consensus 194 ~~~~~~~~~~d~~~~l~~~g~~v~~~~~~~~~~~~I~t~~dl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ 273 (446)
T PRK14353 194 DNAKGEYYLTDIVAIARAEGLRVAVVEAPEDEVRGINSRAELAEAEAVWQARRRRAAMLAGVTLIAPETVFFSYDTVIGR 273 (446)
T ss_pred cCCCCcEeHHHHHHHHHHCCCeEEEEecChhhcccCCCHHHHHHHHHHHHHHHHHHHHHCCCEeeCCCeEEECCceEECC
Confidence 1 223567888888876 579999987 4699999999999998644322 1 11112233333444
Q ss_pred CCccCCCeeeec-------------eeeeeeEECCCCEEcc-eeEe-ecEEcCCcEECCCCEEeeeEEeCCcccCchhhH
Q 009720 390 SPRFLPPTKIDN-------------CRIKDAIISHGCFLRE-CTVE-HSIVGERSRLDYGVELKDTVMLGADYYQTESEI 454 (527)
Q Consensus 390 ~~~~~~p~~i~~-------------~~i~~s~I~~g~~I~~-~~i~-~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~ 454 (527)
++.+.+++.|.+ +.|.+++||++|.|++ +.|. +|+||++|.|+++|.|.++.+..+
T Consensus 274 ~~~i~~~~~I~~~~~ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~i~~~--------- 344 (446)
T PRK14353 274 DVVIEPNVVFGPGVTVASGAVIHAFSHLEGAHVGEGAEVGPYARLRPGAELGEGAKVGNFVEVKNAKLGEG--------- 344 (446)
T ss_pred CCEECCCCEECCCCEECCCCEECCCeEEeccEECCCcEECCCeEEeccceecCCeEEcCceEEeceEECCC---------
Confidence 444444443332 2223455666666653 4443 566666666666666655555544
Q ss_pred HhhhcCCccceEeCCCcEEeeeEEcCCCEECCCcEEeCC-------CCcCCCccCCCceEEecCeEEEccCCEeCCCccC
Q 009720 455 ASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNK-------DDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 527 (527)
Q Consensus 455 ~~~~~~~~~~~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~-------~~v~~~~~~~~~~~i~~g~~vi~~~~~I~~g~vi 527 (527)
+.|++++.+.+++||+++.||.++++.+. ..+++++.++.++.|..| +.||++++|++|++|
T Consensus 345 ----------~~i~~~~~i~~~~ig~~~~Ig~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~-~~Ig~~~~ig~~s~v 413 (446)
T PRK14353 345 ----------AKVNHLTYIGDATIGAGANIGAGTITCNYDGFNKHRTEIGAGAFIGSNSALVAP-VTIGDGAYIASGSVI 413 (446)
T ss_pred ----------CEECCeeEEcCcEEcCCcEECCceeeeccccccCCCcEECCCcEECCCCEEeCC-CEECCCCEECCCCEE
Confidence 67777778888899999999999888653 345566667777777666 346999999888864
No 21
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=1.2e-39 Score=351.19 Aligned_cols=382 Identities=16% Similarity=0.216 Sum_probs=238.1
Q ss_pred ceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCcccCCC
Q 009720 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (527)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~ 173 (527)
.+.|||||||+||||+ ...||||+|++|+ |||+|++++|...++++|+|++++..+.+.+++. . .
T Consensus 5 ~~~aiILAaG~gtR~~---~~~pK~l~~i~gk-pli~~~l~~l~~~~~~~iivv~~~~~~~i~~~~~-----~---~--- 69 (456)
T PRK14356 5 TTGALILAAGKGTRMH---SDKPKVLQTLLGE-PMLRFVYRALRPLFGDNVWTVVGHRADMVRAAFP-----D---E--- 69 (456)
T ss_pred ceeEEEEcCCCCccCC---CCCCceecccCCC-cHHHHHHHHHHhcCCCcEEEEECCCHHHHHHhcc-----c---c---
Confidence 5889999999999997 4699999999999 9999999999999999999999998777655442 1 1
Q ss_pred eEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-ee-cCCHHHHHHHHHHcCCcEEEEEEEc
Q 009720 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LY-RMDYMDFIQSHVDRDADITISCAAV 251 (527)
Q Consensus 174 ~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~-l~-~~dl~~ll~~h~~~~ad~tv~~~~~ 251 (527)
.++++.... ..||+++|+.+++++++ ...++|++++||+ ++ ..++..+++.|+ ++++++.+.++
T Consensus 70 ~~~~v~~~~---------~~Gt~~al~~a~~~l~~---~~~d~vlv~~gD~P~i~~~~i~~li~~~~--~~~~~l~~~~~ 135 (456)
T PRK14356 70 DARFVLQEQ---------QLGTGHALQCAWPSLTA---AGLDRVLVVNGDTPLVTTDTIDDFLKEAA--GADLAFMTLTL 135 (456)
T ss_pred CceEEEcCC---------CCCcHHHHHHHHHHHhh---cCCCcEEEEeCCcccCCHHHHHHHHHHHh--cCCEEEEEEEc
Confidence 134443222 25999999999988863 2347899999998 34 466899998875 66788888887
Q ss_pred CCCCCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCC---C
Q 009720 252 GESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP---T 328 (527)
Q Consensus 252 ~~~~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~---~ 328 (527)
++ +..||.+.. ++|+|..|.|||...... ....+..+++|+|+|++++|..+++...+ .
T Consensus 136 ~~--~~~~g~v~~-~~g~V~~~~ek~~~~~~~---------------~~~~~~~~~~GiY~f~~~~l~~ll~~l~~~~~~ 197 (456)
T PRK14356 136 PD--PGAYGRVVR-RNGHVAAIVEAKDYDEAL---------------HGPETGEVNAGIYYLRLDAVESLLPRLTNANKS 197 (456)
T ss_pred CC--CCCceEEEE-cCCeEEEEEECCCCChHH---------------hhhhcCeEEEEEEEEEHHHHHHHHHhccCcccC
Confidence 76 457998877 578999999998642100 00013578999999999998766654332 2
Q ss_pred CCchhhhhHHhhhhc-CceEEEEecc--eEEecCCHHHHHHHHHHhhccCCCCccCCCCC--------CCCCCCccCCCe
Q 009720 329 SNDFGSEIIPAAIME-HDVQAYIFRD--YWEDIGTIKSFYEANMALTKESPAFHFYDPKT--------PFYTSPRFLPPT 397 (527)
Q Consensus 329 ~~d~~~dii~~li~~-~~V~~~~~~g--~w~dIgt~~d~~~An~~ll~~~~~~~~~~~~~--------~i~~~~~~~~p~ 397 (527)
...+.+++++.+++. .++++|.+.+ +|.+|+||+||.+|+..+..+... .++.+.. .+...+.+.+++
T Consensus 198 ~e~~ltd~i~~~~~~g~~v~~~~~~~~~~~~~I~tp~dl~~a~~~l~~~~~~-~~~~~~~~i~~~~~~~i~~~~~i~~~~ 276 (456)
T PRK14356 198 GEYYITDLVGLAVAEGMNVLGVNCGEDPNLLGVNTPAELVRSEELLRARIVE-KHLESGVLIHAPESVRIGPRATIEPGA 276 (456)
T ss_pred CcEEHHHHHHHHHHCCCeEEEEEcCCcCeEecCcCHHHHHHHHHHHHHHHHH-HHHHcCCEEeCCCcEEECCCcEECCCC
Confidence 334567889888766 5799999876 579999999999998777654211 0111111 111122222222
Q ss_pred eeec-eee-eeeEECCCCEEc-ceeEeecEEcCCcEECCCCEEeeeEEeCC-----------------c-ccCchhhH-H
Q 009720 398 KIDN-CRI-KDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGA-----------------D-YYQTESEI-A 455 (527)
Q Consensus 398 ~i~~-~~i-~~s~I~~g~~I~-~~~i~~svIg~~~~I~~~~~I~~~~i~~~-----------------~-~~~~~~~~-~ 455 (527)
.|.+ |.| .+++||++|.|+ ++.|.+|+||++|+|+++|.|.++++..+ + ......++ .
T Consensus 277 ~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~ig~~~~ig~~~~i~~ 356 (456)
T PRK14356 277 EIYGPCEIYGASRIARGAVIHSHCWLRDAVVSSGATIHSFSHLEGAEVGDGCSVGPYARLRPGAVLEEGARVGNFVEMKK 356 (456)
T ss_pred EEeCCcEEeCceEECCCCEECCCeEEEeeEECCCCEEeeeEEEcccceecccEECCceEECCCCEECCCCEecCCceeee
Confidence 2211 222 134444444444 24444444444444444444444333333 1 11111111 1
Q ss_pred hhhcCCccceEeCCCcEEeeeEEcCCCEECCCcEEeCCCCcCC-CccCCCceEEecCeEEEccCCEeCCCccC
Q 009720 456 SLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQE-ADRPELGFYIRSGITIIMEKATIEDGMVI 527 (527)
Q Consensus 456 ~~~~~~~~~~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~~~v~~-~~~~~~~~~i~~g~~vi~~~~~I~~g~vi 527 (527)
+.+.++ +.|++++++.+|+||+++.||+++.+.+.++... .+++++++++..+ ++|..+++||++++|
T Consensus 357 ~~i~~~---~~i~~~~~ig~~~ig~~~~Ig~~~~~~~~~~~~~~~~~igd~~~ig~~-~~i~~~~~ig~~~~i 425 (456)
T PRK14356 357 AVLGKG---AKANHLTYLGDAEIGAGANIGAGTITCNYDGVNKHRTVIGEGAFIGSN-TALVAPVTIGDGALV 425 (456)
T ss_pred eEecCC---cEecccccccCeEECCCCEECCCceeeccccccCCCCEECCCcEEcCC-CEEeCCcEECCCCEE
Confidence 222222 3334444444555555555666555555433222 3556666666555 334566667766653
No 22
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=2.3e-39 Score=349.22 Aligned_cols=382 Identities=22% Similarity=0.295 Sum_probs=266.9
Q ss_pred ceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCcccCCC
Q 009720 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (527)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~ 173 (527)
+++|||||||.|+||++ .+||||+|++|+ |||+|+++++.++|++++++++++..+++.+|+. ..
T Consensus 2 ~~~avIlAaG~g~Rl~~---~~pK~ll~i~Gk-pli~~~l~~l~~~gi~~iivvv~~~~~~i~~~~~-----~~------ 66 (458)
T PRK14354 2 NRYAIILAAGKGTRMKS---KLPKVLHKVCGK-PMVEHVVDSVKKAGIDKIVTVVGHGAEEVKEVLG-----DR------ 66 (458)
T ss_pred CceEEEEeCCCCcccCC---CCChhhCEeCCc-cHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhc-----CC------
Confidence 46899999999999974 699999999999 9999999999999999999999998888766653 11
Q ss_pred eEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce--eecCCHHHHHHHHHHcCCcEEEEEEEc
Q 009720 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAAV 251 (527)
Q Consensus 174 ~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~--l~~~dl~~ll~~h~~~~ad~tv~~~~~ 251 (527)
+.++... +..|++++++.++.++++ ..+.|++++||. +...++.++++.|.+.+++.++++.+.
T Consensus 67 -~~~~~~~---------~~~g~~~al~~a~~~l~~----~~d~vlv~~~D~p~i~~~~l~~li~~~~~~~~~~t~~~~~~ 132 (458)
T PRK14354 67 -SEFALQE---------EQLGTGHAVMQAEEFLAD----KEGTTLVICGDTPLITAETLKNLIDFHEEHKAAATILTAIA 132 (458)
T ss_pred -cEEEEcC---------CCCCHHHHHHHHHHHhcc----cCCeEEEEECCccccCHHHHHHHHHHHHhcCCceEEEEEEc
Confidence 2222211 125999999999988852 236799999997 335678999999988888888888776
Q ss_pred CCCCCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCCC---
Q 009720 252 GESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT--- 328 (527)
Q Consensus 252 ~~~~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~~--- 328 (527)
++ +..|+.+..|++++|..+.|||..... ....+.+++|+|+|+++.|...++.....
T Consensus 133 ~~--~~~~g~v~~d~~~~V~~~~ek~~~~~~-----------------~~~~~~~~~Giy~f~~~~l~~~l~~~~~~~~~ 193 (458)
T PRK14354 133 EN--PTGYGRIIRNENGEVEKIVEQKDATEE-----------------EKQIKEINTGTYCFDNKALFEALKKISNDNAQ 193 (458)
T ss_pred CC--CCCceEEEEcCCCCEEEEEECCCCChH-----------------HhcCcEEEEEEEEEEHHHHHHHHHHhCccccC
Confidence 54 456898888888999999998752110 00235789999999998766666554321
Q ss_pred CCchhhhhHHhhhhc-CceEEEEecce--EEecCCHHHHHHHHHHhhccC------CCCccCCC-------CCCCCCCCc
Q 009720 329 SNDFGSEIIPAAIME-HDVQAYIFRDY--WEDIGTIKSFYEANMALTKES------PAFHFYDP-------KTPFYTSPR 392 (527)
Q Consensus 329 ~~d~~~dii~~li~~-~~V~~~~~~g~--w~dIgt~~d~~~An~~ll~~~------~~~~~~~~-------~~~i~~~~~ 392 (527)
...+..++++.+++. .++++|.++++ |.++++++||..|+..+..+. +...++++ ...+...+.
T Consensus 194 ~~~~~~d~~~~l~~~g~~v~~~~~~g~~~~i~i~~~~Dl~~a~~ll~~~~~~~~~~~~~~~i~~~~~~i~~~~~ig~~~~ 273 (458)
T PRK14354 194 GEYYLTDVIEILKNEGEKVGAYQTEDFEESLGVNDRVALAEAEKVMRRRINEKHMVNGVTIIDPESTYIDADVEIGSDTV 273 (458)
T ss_pred CcEeHHHHHHHHHHCCCeEEEEecCCcceEEccCCHHHHHHHHHHHHHHHHHHHHhCCcEEeCCCeEEECCCcEECCCCE
Confidence 223457888888876 57999999976 567889999999886543211 12222232 222333333
Q ss_pred cCCC------------eeee-ceeeeeeEECCCCEEcceeEeecEEcCCcEECCCCEEeeeEEeCCc-ccCchhhH-Hhh
Q 009720 393 FLPP------------TKID-NCRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGAD-YYQTESEI-ASL 457 (527)
Q Consensus 393 ~~~p------------~~i~-~~~i~~s~I~~g~~I~~~~i~~svIg~~~~I~~~~~I~~~~i~~~~-~~~~~~~~-~~~ 457 (527)
+.++ +.|. ++.|.+++|+++|.|+++.+.+|+||++|.|+++|.|....+++.+ ......++ .+.
T Consensus 274 i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~ig~~~~I~~~~i~~~~ig~~~~Ig~~~~i~~~~~Ig~~~~i~~~~~i~~~~ 353 (458)
T PRK14354 274 IEPGVVIKGNTVIGEDCVIGPGSRIVDSTIGDGVTITNSVIEESKVGDNVTVGPFAHLRPGSVIGEEVKIGNFVEIKKST 353 (458)
T ss_pred EeCCeEEecceEECCCCEECCCcEEeccEECCCCEEEEEEEeCCEECCCcEECCceEecCCCEEeCCcEECCceEEeeeE
Confidence 3322 2221 2445567788888887777788888888888888888743333332 12222222 223
Q ss_pred hcCCccceEeCCCcEEeeeEEcCCCEECCCcEEeCCC-------CcCCCccCCCceEEecCeEEEccCCEeCCCccC
Q 009720 458 LAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKD-------DVQEADRPELGFYIRSGITIIMEKATIEDGMVI 527 (527)
Q Consensus 458 ~~~~~~~~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~~-------~v~~~~~~~~~~~i~~g~~vi~~~~~I~~g~vi 527 (527)
+.++ +.|++.+.+.+|+||+|+.||.++.+.|.+ .++++++++.++.|..| +.||++++|++|++|
T Consensus 354 i~~~---~~i~~~~~~~~~~ig~~~~ig~~~~~~~~~~~~~~~~~igd~~~ig~~s~i~~~-~~ig~~~~v~~~~~v 426 (458)
T PRK14354 354 IGEG---TKVSHLTYIGDAEVGENVNIGCGTITVNYDGKNKFKTIIGDNAFIGCNSNLVAP-VTVGDNAYIAAGSTI 426 (458)
T ss_pred ECCC---CEecceeeecCcccCCceEEcCceeecccccccccCCEECCCcEEccCCEEeCC-cEECCCCEECCCCEE
Confidence 3333 455555666678888888888888887743 34566666677777666 456999999999875
No 23
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=4.2e-39 Score=346.34 Aligned_cols=375 Identities=21% Similarity=0.246 Sum_probs=250.2
Q ss_pred eEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCcccCCCe
Q 009720 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (527)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~~ 174 (527)
|+|||||||.||||++ .+||||+|++|+ |||+|+|+++.+.+ ++|+|++++..+.+.+|+. .+
T Consensus 1 m~avIlA~G~gtRl~~---~~pK~l~~v~gk-pli~~~l~~l~~~~-~~i~vv~~~~~~~i~~~~~-----~~------- 63 (448)
T PRK14357 1 MRALVLAAGKGTRMKS---KIPKVLHKISGK-PMINWVIDTAKKVA-QKVGVVLGHEAELVKKLLP-----EW------- 63 (448)
T ss_pred CeEEEECCCCCccCCC---CCCceeeEECCe-eHHHHHHHHHHhcC-CcEEEEeCCCHHHHHHhcc-----cc-------
Confidence 6899999999999974 699999999999 99999999999975 8999999998777765553 11
Q ss_pred EEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce--eecCCHHHHHHHHHHcCCcEEEEEEEcC
Q 009720 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAAVG 252 (527)
Q Consensus 175 V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~--l~~~dl~~ll~~h~~~~ad~tv~~~~~~ 252 (527)
++++. +. ..+||+++++.++.+++ ..+.|++++||. +...++.++++.|+++++++++++.+.+
T Consensus 64 ~~~~~--~~-------~~~g~~~ai~~a~~~l~-----~~~~vlv~~gD~p~i~~~~i~~l~~~~~~~~~d~ti~~~~~~ 129 (448)
T PRK14357 64 VKIFL--QE-------EQLGTAHAVMCARDFIE-----PGDDLLILYGDVPLISENTLKRLIEEHNRKGADVTILVADLE 129 (448)
T ss_pred cEEEe--cC-------CCCChHHHHHHHHHhcC-----cCCeEEEEeCCcccCCHHHHHHHHHHHHhcCCeEEEEEEEcC
Confidence 23322 21 12699999999998885 247899999997 5567899999999988999999998877
Q ss_pred CCCCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCCC---C
Q 009720 253 ESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT---S 329 (527)
Q Consensus 253 ~~~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~~---~ 329 (527)
+ +..||.+.+| ++++ .+.|||..+.. ....+.+++|+|+|++++|.+++++..+. .
T Consensus 130 ~--~~~~g~v~~d-~g~v-~~~e~~~~~~~-----------------~~~~~~~~~GiYv~~~~~l~~~~~~~~~~~~~~ 188 (448)
T PRK14357 130 D--PTGYGRIIRD-GGKY-RIVEDKDAPEE-----------------EKKIKEINTGIYVFSGDFLLEVLPKIKNENAKG 188 (448)
T ss_pred C--CCCcEEEEEc-CCeE-EEEECCCCChH-----------------HhcCcEEEeEEEEEEHHHHHHHHHhhCcCCCCC
Confidence 5 5679999887 6788 88887653210 00125789999999999987776654322 1
Q ss_pred CchhhhhHHhhhhcCceEEEEecce--EEecCCHHHHHHHHHHhhcc----C--CCCc-------cCCCCCCCCCCCccC
Q 009720 330 NDFGSEIIPAAIMEHDVQAYIFRDY--WEDIGTIKSFYEANMALTKE----S--PAFH-------FYDPKTPFYTSPRFL 394 (527)
Q Consensus 330 ~d~~~dii~~li~~~~V~~~~~~g~--w~dIgt~~d~~~An~~ll~~----~--~~~~-------~~~~~~~i~~~~~~~ 394 (527)
..+..|+++.+ .++++|.+.+| |.+++++++|..+...+... . +... ++++.+.|...+.+.
T Consensus 189 ~~~~~d~i~~~---~~v~~~~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~Ig~~~~i~ 265 (448)
T PRK14357 189 EYYLTDAVNFA---EKVRVVKTEDLLEITGVNTRIQLAWLEKQLRMRILEELMENGVTILDPNTTYIHYDVEIGMDTIIY 265 (448)
T ss_pred eEEHHHHHHhh---hheeEEecCCHHHEEccCCHHHHHHHHHHHHHHHHHHHHHcCCEEeCCCcEEEccceEECCCcEEc
Confidence 22345777766 35889999998 66778999998876554221 0 1111 233334444444444
Q ss_pred CCeeee-------------ceeeeeeEECCCCEEcceeEeecEEcCCcEECCCCEEeeeEEeCCc-ccCchhhH-Hhhhc
Q 009720 395 PPTKID-------------NCRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGAD-YYQTESEI-ASLLA 459 (527)
Q Consensus 395 ~p~~i~-------------~~~i~~s~I~~g~~I~~~~i~~svIg~~~~I~~~~~I~~~~i~~~~-~~~~~~~~-~~~~~ 459 (527)
|++.|. .+.|.+|+|+++|.|..+.+.+|+||+++.|+++++|+...+++++ ......++ .+.++
T Consensus 266 ~~~~I~~~~~ig~~~~I~~~~~i~~s~Ig~~~~I~~~~v~~sii~~~~~ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~ig 345 (448)
T PRK14357 266 PMTFIEGKTRIGEDCEIGPMTRIVDCEIGNNVKIIRSECEKSVIEDDVSVGPFSRLREGTVLKKSVKIGNFVEIKKSTIG 345 (448)
T ss_pred CCcEEEeeeEECCCcEECCCceecccEECCCCEEeeeEEEEEEEeCCcEECCCcEECCcccccCCcEecCceeeeccEEc
Confidence 443332 1334456666666666566667777777777777777543333332 11111111 12233
Q ss_pred CCccceEeCCCcEEeeeEEcCCCEECCCcEEeCCCCcCC-CccCCCceEEecCe-----EEEccCCEeCCCccC
Q 009720 460 EGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQE-ADRPELGFYIRSGI-----TIIMEKATIEDGMVI 527 (527)
Q Consensus 460 ~~~~~~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~~~v~~-~~~~~~~~~i~~g~-----~vi~~~~~I~~g~vi 527 (527)
++ +.+++.+.+.+++||+|+.||.++++.+..+... .+.++++++|+.+. +.||+++.|++|++|
T Consensus 346 ~~---~~~~~~~~~~~~~Ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~gv~Ig~~~~i~ag~~v 416 (448)
T PRK14357 346 EN---TKAQHLTYLGDATVGKNVNIGAGTITCNYDGKKKNPTFIEDGAFIGSNSSLVAPVRIGKGALIGAGSVI 416 (448)
T ss_pred CC---cCccccccccCcEECCCcEECCCcccccccccccCCcEECCCCEECCCCEEeCCcEECCCCEEcCCCEE
Confidence 33 3344444555678888888888888776543322 24445544444443 346888888888764
No 24
>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1.7e-39 Score=315.43 Aligned_cols=279 Identities=24% Similarity=0.366 Sum_probs=221.8
Q ss_pred eEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCc-hhHHHHHHHhhccCCcccCCC
Q 009720 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNS-ASLNRHIARTYFGNGTNFGDG 173 (527)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~-~~i~~hl~~~y~~~~~~~~~~ 173 (527)
|++||||||.||||+|+|...||+|+||.+| |||+|+|+.|..+||++|.||++++. ..+ +..++++..|+
T Consensus 1 mKgiILAgG~GTRL~PlT~~~~KqLlpV~~K-Pmi~y~l~~L~~aGI~dI~II~~~~~~~~~-----~~llGdgs~~g-- 72 (286)
T COG1209 1 MKGVILAGGSGTRLRPLTRVVPKQLLPVYDK-PMIYYPLETLMLAGIRDILIVVGPEDKPTF-----KELLGDGSDFG-- 72 (286)
T ss_pred CCcEEecCcCccccccccccCCcccceecCc-chhHhHHHHHHHcCCceEEEEecCCchhhh-----hhhhcCccccC--
Confidence 7899999999999999999999999999999 99999999999999999999999854 333 23357778887
Q ss_pred eEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeecCCHHHHHHHHHHcCCcEEEEEEEcCC
Q 009720 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGE 253 (527)
Q Consensus 174 ~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tv~~~~~~~ 253 (527)
+.+-++.|+. +.|.|+|+..+.+++. .++|+++.||.++..++.++++.+.++..+.++++.++++
T Consensus 73 -v~itY~~Q~~-------p~GlA~Av~~a~~fv~------~~~f~l~LGDNi~~~~l~~~~~~~~~~~~ga~i~~~~V~d 138 (286)
T COG1209 73 -VDITYAVQPE-------PDGLAHAVLIAEDFVG------DDDFVLYLGDNIFQDGLSELLEHFAEEGSGATILLYEVDD 138 (286)
T ss_pred -cceEEEecCC-------CCcHHHHHHHHHhhcC------CCceEEEecCceeccChHHHHHHHhccCCCcEEEEEEcCC
Confidence 5666666754 3699999999999986 4899999999998779999999998888899999999998
Q ss_pred CCCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCCCC-Cch
Q 009720 254 SRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTS-NDF 332 (527)
Q Consensus 254 ~~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~~~-~d~ 332 (527)
+++||++++|++|+|+++.|||+.+. |+++-+|+|+|++++|. .++...|+. .++
T Consensus 139 --P~rfGV~e~d~~~~v~~l~EKP~~P~---------------------SNlAvtGlY~~d~~Vf~-~~~~ikPS~RGEl 194 (286)
T COG1209 139 --PSRYGVVEFDEDGKVIGLEEKPKEPK---------------------SNLAVTGLYFYDPSVFE-AIKQIKPSARGEL 194 (286)
T ss_pred --cccceEEEEcCCCcEEEeEECCCCCC---------------------CceeEEEEEEeChHHHH-HHHcCCCCCCCce
Confidence 67899999999999999999999764 68999999999999996 667776653 233
Q ss_pred -hhhhHHhhhhc-CceEEEEecceEEecCCHHHHHHHHHHhhccCCCCccCCCCCCCCCCCccCCCeeeeceeeeeeEEC
Q 009720 333 -GSEIIPAAIME-HDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIIS 410 (527)
Q Consensus 333 -~~dii~~li~~-~~V~~~~~~g~w~dIgt~~d~~~An~~ll~~~~~~~~~~~~~~i~~~~~~~~p~~i~~~~i~~s~I~ 410 (527)
.+|+++.++++ ..+.....+|.|.|.||++||++|+..+...... -.....+|..++ -++.|.
T Consensus 195 EITd~i~~~i~~G~~~~~~~~~G~WlDtGt~~slleA~~~i~~~~~~----------~G~~~~~~~~~~-----~~~~i~ 259 (286)
T COG1209 195 EITDAIDLYIEKGYLVVAILIRGWWLDTGTPESLLEANNFVRTVSKR----------QGFKIACPEEIA-----WNGWID 259 (286)
T ss_pred EehHHHHHHHHcCcEEEEEEccceEEecCChhhHHHHHHHHHHHHhh----------cCCEEeChhHEE-----EecEEe
Confidence 47899999988 4566777788999999999999999988752211 001111222222 244444
Q ss_pred CCCEEc-ceeEeecEEcCCcEECCC
Q 009720 411 HGCFLR-ECTVEHSIVGERSRLDYG 434 (527)
Q Consensus 411 ~g~~I~-~~~i~~svIg~~~~I~~~ 434 (527)
.-++++ ++.+.+|-+|+..+++.+
T Consensus 260 ~~~~~~~~~~l~~~~~G~y~~~~~~ 284 (286)
T COG1209 260 GPGLIGLASQLEKSGYGQYLLELLR 284 (286)
T ss_pred chHhhccccchhhcCcchhhhhhhc
Confidence 444444 244456677776666544
No 25
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=3e-38 Score=339.78 Aligned_cols=380 Identities=19% Similarity=0.253 Sum_probs=264.1
Q ss_pred eEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCcccCCCe
Q 009720 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (527)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~~ 174 (527)
|.+||||||.|+||++ .+||||+|++|+ |||+|+++++.++|+++++|++++..+++.+|+.+ + . .
T Consensus 2 ~~~iIlAaG~gsR~~~---~~pK~ll~v~gk-pli~~~l~~l~~~g~~~iivvv~~~~~~i~~~~~~-~-------~--~ 67 (450)
T PRK14360 2 LAVAILAAGKGTRMKS---SLPKVLHPLGGK-SLVERVLDSCEELKPDRRLVIVGHQAEEVEQSLAH-L-------P--G 67 (450)
T ss_pred ceEEEEeCCCCccCCC---CCChhcCEECCh-hHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhcc-c-------C--C
Confidence 6799999999999985 689999999999 99999999999999999999999988777766641 1 1 2
Q ss_pred EEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce--eecCCHHHHHHHHHHcCCcEEEEEEEcC
Q 009720 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAAVG 252 (527)
Q Consensus 175 V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~--l~~~dl~~ll~~h~~~~ad~tv~~~~~~ 252 (527)
++++... ++.|++++++.++.++++ ..+++++++||+ +...++.++++.|++.++++++++.+.+
T Consensus 68 i~~v~~~---------~~~G~~~sv~~~~~~l~~----~~~~vlV~~~D~P~i~~~~l~~ll~~~~~~~~~~~~~~~~~~ 134 (450)
T PRK14360 68 LEFVEQQ---------PQLGTGHAVQQLLPVLKG----FEGDLLVLNGDVPLLRPETLEALLNTHRSSNADVTLLTARLP 134 (450)
T ss_pred eEEEEeC---------CcCCcHHHHHHHHHHhhc----cCCcEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEEecC
Confidence 4554322 135999999999888852 236799999998 4467799999999998888888877766
Q ss_pred CCCCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCCC---C
Q 009720 253 ESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT---S 329 (527)
Q Consensus 253 ~~~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~~---~ 329 (527)
+ +..||.+.+|++|+|.++.|||..... ...++++++|+|+|+++.|.+++++..+. .
T Consensus 135 ~--~~~~g~~~~d~~g~v~~~~ek~~~~~~-----------------~~~~~~~~~Giy~f~~~~l~~~~~~~~~~~~~~ 195 (450)
T PRK14360 135 N--PKGYGRVFCDGNNLVEQIVEDRDCTPA-----------------QRQNNRINAGIYCFNWPALAEVLPKLSSNNDQK 195 (450)
T ss_pred C--CCCccEEEECCCCCEEEEEECCCCChh-----------------HhcCcEEEEEEEEEEHHHHHHHHhhccccccCC
Confidence 5 456999999999999999999864210 01246899999999999888777665432 2
Q ss_pred CchhhhhHHhhhhcCceEEEEecce--EEecCCHHHHHHHHHHhhccC------CCCccCCC------------------
Q 009720 330 NDFGSEIIPAAIMEHDVQAYIFRDY--WEDIGTIKSFYEANMALTKES------PAFHFYDP------------------ 383 (527)
Q Consensus 330 ~d~~~dii~~li~~~~V~~~~~~g~--w~dIgt~~d~~~An~~ll~~~------~~~~~~~~------------------ 383 (527)
..+.+++++.+. ++..|.+.++ |..+++++++..+...+.... +...+.++
T Consensus 196 e~~~td~i~~~~---~~~~~~v~~~~~~~~i~~~~dl~~~~~~l~~~~~~~~~d~~~~~i~~~~~~i~~~~~ig~~~~i~ 272 (450)
T PRK14360 196 EYYLTDTVSLLD---PVMAVEVEDYQEINGINDRKQLAQCEEILQNRIKEKWMLAGVTFIDPASCTISETVELGPDVIIE 272 (450)
T ss_pred ceeHHHHHHHHh---hceEEecCCHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhcCcEEecCCeEEEeCCEEECCCCEEC
Confidence 235567776663 3566777776 466999999988876543211 00011111
Q ss_pred -CCCCCCCCccCCCeeee-ceeeeeeEECCCCEEcceeEeecEEcCCcEECCCCEEee-eEEeCCcccCchhhH-Hhhhc
Q 009720 384 -KTPFYTSPRFLPPTKID-NCRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKD-TVMLGADYYQTESEI-ASLLA 459 (527)
Q Consensus 384 -~~~i~~~~~~~~p~~i~-~~~i~~s~I~~g~~I~~~~i~~svIg~~~~I~~~~~I~~-~~i~~~~~~~~~~~~-~~~~~ 459 (527)
.+.+.....+.+++.|. ++.|.+++|+++|.|+.+.+.+|+||++|+|+++|.|.+ +++.++........+ .+.+.
T Consensus 273 ~~~~i~~~~~ig~~~~I~~~~~I~~~~I~~~~~I~~~~i~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~i~ 352 (450)
T PRK14360 273 PQTHLRGNTVIGSGCRIGPGSLIENSQIGENVTVLYSVVSDSQIGDGVKIGPYAHLRPEAQIGSNCRIGNFVEIKKSQLG 352 (450)
T ss_pred CCCEEeCCcEECCCCEECCCcEEEEEEEcCCCEEeeeEEeeccccCCcEECCCCEECCCCEEeCceEECCCEEEeccccC
Confidence 11222223334444442 356677888888888777778888888888888888874 444433212211111 22333
Q ss_pred CCccceEeCCCcEEeeeEEcCCCEECCCcEEeCCC-------CcCCCccCCCceEEecCeEEEccCCEeCCCccC
Q 009720 460 EGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKD-------DVQEADRPELGFYIRSGITIIMEKATIEDGMVI 527 (527)
Q Consensus 460 ~~~~~~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~~-------~v~~~~~~~~~~~i~~g~~vi~~~~~I~~g~vi 527 (527)
++ +.|++++.+.+++|++++.||+++.+.+.+ .++++++++.++.|..| +.||++++|++|++|
T Consensus 353 ~~---~~i~~~~~~~~~~i~~~~~iG~~~~~~~~~~~~~~~~~Ig~~~~iG~~~~i~~~-~~ig~~~~v~~~~~v 423 (450)
T PRK14360 353 EG---SKVNHLSYIGDATLGEQVNIGAGTITANYDGVKKHRTVIGDRSKTGANSVLVAP-ITLGEDVTVAAGSTI 423 (450)
T ss_pred CC---cEeccceecCCceecCCcEECccceeccccccccCCcEeCCCeEeCCCCEEeCC-cEECCCCEECCCCEE
Confidence 33 444555555567888888888888887633 34455555555555555 445888888888764
No 26
>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit. GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose
Probab=100.00 E-value=2e-38 Score=322.71 Aligned_cols=243 Identities=18% Similarity=0.263 Sum_probs=192.5
Q ss_pred CCceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhh-c------
Q 009720 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-F------ 164 (527)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y-~------ 164 (527)
|.+|+|||||||.||||+|+|+.+||||+||+|+ |+|+|+++++.++|+++|+|+++|..+++.+|+...+ +
T Consensus 1 ~~~mkavILAaG~GTRL~PlT~~~PKpLvpV~gk-PiI~~vl~~l~~~Gi~~ivivv~~~~~~i~~~~~~~~~~~~~~~~ 79 (297)
T TIGR01105 1 MTNLKAVIPVAGLGMHMLPATKAIPKEMLPIVDK-PMIQYIVDEIVAAGIKEIVLVTHASKNAVENHFDTSYELESLLEQ 79 (297)
T ss_pred CCceEEEEECCCCCcccCcccCCCCceeeEECCE-EHHHHHHHHHHHCCCCEEEEEecCChHHHHHHHhchHHHHHHHHH
Confidence 5689999999999999999999999999999999 9999999999999999999999999999999985322 1
Q ss_pred ----------cCCcccCCCeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeec-------
Q 009720 165 ----------GNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYR------- 227 (527)
Q Consensus 165 ----------~~~~~~~~~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~------- 227 (527)
.....++ +++....|. +++|||+||++++++++ .++|+|++||++++
T Consensus 80 ~~~~~~~~~~~~~~~~~---~~i~~~~q~-------~~lGtg~Av~~a~~~l~------~~~flvv~gD~l~~~~~~~~~ 143 (297)
T TIGR01105 80 RVKRQLLAEVQSICPPG---VTIMNVRQA-------QPLGLGHSILCARPVVG------DNPFVVVLPDIIIDDATADPL 143 (297)
T ss_pred hcchhhhhhhhhcCCCC---ceEEEeeCC-------CcCchHHHHHHHHHHhC------CCCEEEEECCeeccccccccc
Confidence 0000111 233222332 35799999999999885 26899999999986
Q ss_pred -CCHHHHHHHHHHcCCcEEEEEEEcCCCCCCCceEEEE----CCCCc---eEEEEecCCccccccccccccccCCCcccc
Q 009720 228 -MDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKI----DNMGR---IAQFAEKPSGANLKAMQVDTSLLGFSPQEA 299 (527)
Q Consensus 228 -~dl~~ll~~h~~~~ad~tv~~~~~~~~~~~~~g~v~~----D~~g~---V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~ 299 (527)
.++.+++++|.++++.+ +++.++.+ .++.||++.+ |++|+ |.++.|||..+..
T Consensus 144 ~~~l~~li~~~~~~~~~~-~~~~~~~~-~~~~yGvv~~~~~~d~~g~v~~I~~~~EKP~~~~~----------------- 204 (297)
T TIGR01105 144 RYNLAAMIARFNETGRSQ-VLAKRMPG-DLSEYSVIQTKEPLDREGKVSRIVEFIEKPDQPQT----------------- 204 (297)
T ss_pred hhHHHHHHHHHHHhCCcE-EEEEEcCC-CCccceEEEecccccCCCCeeeEeEEEECCCCccc-----------------
Confidence 58999999998777765 44445432 2678999998 44564 5899999964321
Q ss_pred ccCCceeeeeEEEEeHHHHHHHHHhhCCC--CCchhhhhHHhhhhcCceEEEEecceEEecCCHHHHHHHHHHhh
Q 009720 300 RKCPYVASMGVYVFKKDVLFKLLRWRYPT--SNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALT 372 (527)
Q Consensus 300 ~~~~~l~~~GIYif~~~iL~~ll~~~~~~--~~d~~~dii~~li~~~~V~~~~~~g~w~dIgt~~d~~~An~~ll 372 (527)
..+.++++|+|+|++++|. .++...+. .....+++++.+++++++++|.++|+|+|||+|++|.+||.++.
T Consensus 205 -~~s~~~~~GiYi~~~~i~~-~l~~~~~~~~ge~~ltd~i~~l~~~~~v~~~~~~g~w~DiG~p~~~~~a~~~~~ 277 (297)
T TIGR01105 205 -LDSDLMAVGRYVLSADIWA-ELERTEPGAWGRIQLTDAIAELAKKQSVDAMLMTGDSYDCGKKMGYMQAFVKYG 277 (297)
T ss_pred -CCcCEEEEEEEEECHHHHH-HHhcCCCCCCCeeeHHHHHHHHHhcCCEEEEEeccEEECCCCHHHHHHHHHHHH
Confidence 1247899999999999987 45554332 22335799999999999999999999999999999999999875
No 27
>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.1e-37 Score=326.69 Aligned_cols=382 Identities=18% Similarity=0.325 Sum_probs=287.7
Q ss_pred CCceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCcccC
Q 009720 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFG 171 (527)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~ 171 (527)
..+++||+||.-.-+||+|+|..+|++|+|++|. |||+|+|++|..+|+.+++|+++.+..++++|+.+.-|.....+-
T Consensus 22 ~~rLqAIllaDsf~trF~Plt~~~p~~LLPlaNV-pmIdYtL~~L~~agV~eVfvfc~~~~~qi~e~i~~sew~~~~~~~ 100 (673)
T KOG1461|consen 22 EHRLQAILLADSFETRFRPLTLEKPRVLLPLANV-PMIDYTLEWLERAGVEEVFVFCSAHAAQIIEYIEKSEWYLPMSFI 100 (673)
T ss_pred ccceEEEEEeccchhcccccccCCCceEeeecCc-hHHHHHHHHHHhcCceEEEEEecccHHHHHHHHhhccccccccce
Confidence 5779999999999999999999999999999999 999999999999999999999999999999999864333322221
Q ss_pred CCeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeecCCHHHHHHHHHHc-----CCcEEE
Q 009720 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDR-----DADITI 246 (527)
Q Consensus 172 ~~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~-----~ad~tv 246 (527)
.+++... . ....||++|.... ++...++|++++||++.+++|.+++++|+++ ++.|||
T Consensus 101 --v~ti~s~-~---------~~S~GDamR~id~-----k~litgDFiLVsgd~vsN~pl~~~l~eHr~r~k~Dk~~iMTm 163 (673)
T KOG1461|consen 101 --VVTICSG-E---------SRSVGDAMRDIDE-----KQLITGDFILVSGDTVSNMPLRNVLEEHRKRRKEDKDAIMTM 163 (673)
T ss_pred --EEEEcCC-C---------cCcHHHHHHHHHh-----cceeecceEEEeCCeeecCchHHHHHHHHHHhhhCccceEEE
Confidence 2233222 1 2478999987642 1234589999999999999999999999643 567888
Q ss_pred EEEEcCCCCCCCceEEEECC-CCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhh
Q 009720 247 SCAAVGESRASDYGLVKIDN-MGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWR 325 (527)
Q Consensus 247 ~~~~~~~~~~~~~g~v~~D~-~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~ 325 (527)
+..+.......+-.++.+|. +.|++.+.+-.... ...+.+.+++.-.+ ....+.++.+++|-+++++++. ++...
T Consensus 164 v~k~~st~~~~~~~~~avd~~T~~ll~yq~~~~~~--~~~~l~~sl~d~~~-~v~vr~DL~dc~IdIcS~~V~s-LF~dN 239 (673)
T KOG1461|consen 164 VFKESSTRETTEQVVIAVDSRTSRLLHYQKCVREK--HDIQLDLSLFDSND-EVEVRNDLLDCQIDICSPEVLS-LFTDN 239 (673)
T ss_pred EEeccccccCCcceEEEEcCCcceEEeehhhcccc--cccccCHHHhcCCC-cEEEEccCCCceeeEecHhHHH-Hhhhc
Confidence 88776421122334555664 57888887622111 12344555555553 3455778999999999999996 55655
Q ss_pred CC--CCCchhhhhHHhhhhcCceEEEEecc--eEEecCCHHHHHHHHHHhhccC-----CCCccCCCCCCCCCCCcc--C
Q 009720 326 YP--TSNDFGSEIIPAAIMEHDVQAYIFRD--YWEDIGTIKSFYEANMALTKES-----PAFHFYDPKTPFYTSPRF--L 394 (527)
Q Consensus 326 ~~--~~~d~~~dii~~li~~~~V~~~~~~g--~w~dIgt~~d~~~An~~ll~~~-----~~~~~~~~~~~i~~~~~~--~ 394 (527)
++ ...||...+|-.-+-..+|+++..+. |-..+.++.+|...++++++++ |...|.+.++.-+..-.+ .
T Consensus 240 FDyq~r~DfV~GvL~~dilg~kI~~~~~~~~~yA~rv~n~~syd~vSkDiI~RW~YP~Vpd~~~~~~q~~~~~r~~IYk~ 319 (673)
T KOG1461|consen 240 FDYQTRDDFVRGVLVDDILGYKIHVHVLSSIDYAARVENLRSYDLVSKDIIQRWTYPLVPDINFSGNQTFSLERRNIYKS 319 (673)
T ss_pred ccceehhhhhhhhhhhhhcCCeEEEEEcChhhhhhhhcccHHHHHHHHHHHHhhcccccccccCCCCceeeecccccccC
Confidence 54 45678888887777789999999976 8899999999999999999987 233343322211111111 1
Q ss_pred CCeeee-ceee-eeeEECCCCEEc-ceeEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCc
Q 009720 395 PPTKID-NCRI-KDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNT 471 (527)
Q Consensus 395 ~p~~i~-~~~i-~~s~I~~g~~I~-~~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~ 471 (527)
+.+.+. .|.+ .++.||.|+.|+ ++.|.||+||.+|+||++|+|+++++|.+ |.||+||
T Consensus 320 ~dv~~~~~~~v~~~~~ig~gT~Ig~g~~I~NSVIG~~c~IgsN~~I~~S~iw~~-------------------v~Igdnc 380 (673)
T KOG1461|consen 320 PDVVLSHSVIVGANVVIGAGTKIGSGSKISNSVIGANCRIGSNVRIKNSFIWNN-------------------VTIGDNC 380 (673)
T ss_pred ccceehhhccccceEEecccccccCCCeeecceecCCCEecCceEEeeeeeecC-------------------cEECCCc
Confidence 222232 3455 578999999999 58899999999999999999999999998 9999999
Q ss_pred EEeeeEEcCCCEECCCcEEeCCCCcCCCccCCCceEEecCeEEEccCCEeCCCccC
Q 009720 472 KIRNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 527 (527)
Q Consensus 472 ~I~~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g~~vi~~~~~I~~g~vi 527 (527)
.|++|||+++|.|++++++.. |+.+..| +|+|+|-+++.+++|
T Consensus 381 ~I~~aii~d~v~i~~~~~l~~------------g~vl~~~-VVv~~~~~l~~ns~~ 423 (673)
T KOG1461|consen 381 RIDHAIICDDVKIGEGAILKP------------GSVLGFG-VVVGRNFVLPKNSKV 423 (673)
T ss_pred eEeeeEeecCcEeCCCcccCC------------CcEEeee-eEeCCCccccccccc
Confidence 999999999999999999954 3666666 555888888777543
No 28
>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry.; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....
Probab=100.00 E-value=4.2e-38 Score=311.54 Aligned_cols=241 Identities=34% Similarity=0.591 Sum_probs=192.6
Q ss_pred EEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEE-EEEeccCchhHHHHHHHhhccCCcccCCCe
Q 009720 96 AAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKI-FVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (527)
Q Consensus 96 ~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I-~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~~ 174 (527)
||||||||+||||+|+|..+||||+|++|+||||+|+|++|.++|+++| +|+++++.+++.+|+...+ .++ -.
T Consensus 1 kavIla~G~GtRl~plt~~~pK~ll~i~g~~pli~~~l~~l~~~g~~~ii~V~~~~~~~~i~~~~~~~~-----~~~-~~ 74 (248)
T PF00483_consen 1 KAVILAGGKGTRLRPLTDTIPKPLLPIGGKYPLIDYVLENLANAGIKEIIVVVNGYKEEQIEEHLGSGY-----KFG-VK 74 (248)
T ss_dssp EEEEEEESCCGGGTTTTTTSSGGGSEETTEEEHHHHHHHHHHHTTCSEEEEEEETTTHHHHHHHHTTSG-----GGT-EE
T ss_pred CEEEECCCCCccCchhhhccccccceecCCCcchhhhhhhhcccCCceEEEEEeecccccccccccccc-----ccc-cc
Confidence 6999999999999999999999999999999999999999999999995 5555577788887775322 232 12
Q ss_pred EEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeecCCHHHHHHHHHHcCCcEEEEEEEcCCC
Q 009720 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGES 254 (527)
Q Consensus 175 V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tv~~~~~~~~ 254 (527)
++++..... .||++||++++.++++. ...++|++++||++++.++.++++.|++++++.++.+...+.+
T Consensus 75 i~~i~~~~~---------~Gta~al~~a~~~i~~~--~~~~~~lv~~gD~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 143 (248)
T PF00483_consen 75 IEYIVQPEP---------LGTAGALLQALDFIEEE--DDDEDFLVLNGDIIFDDDLQDMLEFHRESNADGTVTLLVVPVE 143 (248)
T ss_dssp EEEEEESSS---------SCHHHHHHHTHHHHTTS--EE-SEEEEETTEEEESTTHHHHHHHHHHHSSCESEEEEEEESS
T ss_pred ceeeecccc---------cchhHHHHHHHHHhhhc--cccceEEEEeccccccchhhhHHHhhhcccccccccccccccc
Confidence 444432222 49999999999999731 0023599999999999999999999999998554444444444
Q ss_pred CCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHH--hhCCCCCch
Q 009720 255 RASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLR--WRYPTSNDF 332 (527)
Q Consensus 255 ~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~--~~~~~~~d~ 332 (527)
.++.||++.+|++|+|++|.|||..... +.++++|+|+|++++|..+++ .......++
T Consensus 144 ~~~~~g~v~~d~~~~V~~~~EKP~~~~~--------------------~~~~~~G~Y~~~~~~~~~~~~~~~~~~~~~~~ 203 (248)
T PF00483_consen 144 DPSRYGVVEVDEDGRVIRIVEKPDNPNA--------------------SNLINTGIYIFKPEIFDFLLEMIKENARGEDF 203 (248)
T ss_dssp GGGGSEEEEEETTSEEEEEEESCSSHSH--------------------SSEEEEEEEEEETHHHHHHHHHHHTCTTSSHH
T ss_pred ccccceeeeeccceeEEEEeccCccccc--------------------ceeccCceEEEcchHHHHHhhhhhccchhhhH
Confidence 4788999999999999999999986431 468999999999999987655 222345567
Q ss_pred hhhhHHhhhhcC-ceEEEEecc--eEEecCCHHHHHHHHHHhhc
Q 009720 333 GSEIIPAAIMEH-DVQAYIFRD--YWEDIGTIKSFYEANMALTK 373 (527)
Q Consensus 333 ~~dii~~li~~~-~V~~~~~~g--~w~dIgt~~d~~~An~~ll~ 373 (527)
..++++.+++++ .+.+|.+++ +|.|||||++|++||+.+++
T Consensus 204 l~d~i~~~~~~~~~~~~~~~~~~~~w~dig~~~~~~~a~~~~~~ 247 (248)
T PF00483_consen 204 LTDAIPKLLEQGKKVYAFIFEGNAYWIDIGTPEDYLEANMDLLN 247 (248)
T ss_dssp HHHHHHHHHHTTCEEEEEEHSSEE-EEETSSHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCceEEEEecCCeEEEECCCHHHHHHHHHHHhc
Confidence 889999999986 566889998 79999999999999999875
No 29
>PRK10122 GalU regulator GalF; Provisional
Probab=100.00 E-value=2.8e-37 Score=314.74 Aligned_cols=243 Identities=17% Similarity=0.256 Sum_probs=193.3
Q ss_pred CCceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhh-cc-----
Q 009720 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-FG----- 165 (527)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y-~~----- 165 (527)
|++|+|||||||.||||+|+|+.+||||+||+|+ |+|+|+++++.++||++|+|++++..+++.+|+...| +.
T Consensus 1 ~~~mkavIlAaG~GtRl~PlT~~~PK~llpi~gk-piI~~~l~~l~~~Gi~~i~iv~~~~~~~i~~~~~~~~~l~~~~~~ 79 (297)
T PRK10122 1 MTNLKAVIPVAGLGMHMLPATKAIPKEMLPIVDK-PMIQYIVDEIVAAGIKEIVLVTHASKNAVENHFDTSYELESLLEQ 79 (297)
T ss_pred CCceEEEEECCcCCcccCcccCCCCceeeEECCE-EHHHHHHHHHHHCCCCEEEEEcCCChHHHHHHHhcchhHHHHHhh
Confidence 5789999999999999999999999999999999 9999999999999999999999999999999986322 10
Q ss_pred -----------CCcccCCCeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeec-------
Q 009720 166 -----------NGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYR------- 227 (527)
Q Consensus 166 -----------~~~~~~~~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~------- 227 (527)
....++ +++....|.. +.||++|++++++++. .++|+|++||++++
T Consensus 80 ~~k~~~l~~~~~~~~~~---~~i~~~~q~~-------~lGtg~al~~a~~~l~------~~~fvvi~gD~l~~~~~~~~~ 143 (297)
T PRK10122 80 RVKRQLLAEVQSICPPG---VTIMNVRQGQ-------PLGLGHSILCARPAIG------DNPFVVVLPDVVIDDASADPL 143 (297)
T ss_pred cchhhhHHhhhhccCCC---ceEEEeecCC-------cCchHHHHHHHHHHcC------CCCEEEEECCeeccCcccccc
Confidence 000111 2333333422 2699999999999884 36799999999986
Q ss_pred -CCHHHHHHHHHHcCCcEEEEEEEcCCCCCCCceEEEEC----CCC---ceEEEEecCCccccccccccccccCCCcccc
Q 009720 228 -MDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKID----NMG---RIAQFAEKPSGANLKAMQVDTSLLGFSPQEA 299 (527)
Q Consensus 228 -~dl~~ll~~h~~~~ad~tv~~~~~~~~~~~~~g~v~~D----~~g---~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~ 299 (527)
.|+.++++.|.+.+++++ ++....+ .++.||++.+| ++| +|+.|.|||..+..
T Consensus 144 ~~dl~~li~~h~~~~~~~~-~~~~~~~-~~~~yGvv~~d~~~~~~g~v~~I~~~~EKp~~~~~----------------- 204 (297)
T PRK10122 144 RYNLAAMIARFNETGRSQV-LAKRMPG-DLSEYSVIQTKEPLDREGKVSRIVEFIEKPDQPQT----------------- 204 (297)
T ss_pred chhHHHHHHHHHHhCCcEE-EEEECCC-CCCCceEEEecCcccCCCCeeeEEEEEECCCCccc-----------------
Confidence 589999999988887744 4444432 46789999996 356 78999999964310
Q ss_pred ccCCceeeeeEEEEeHHHHHHHHHhhCCC--CCchhhhhHHhhhhcCceEEEEecceEEecCCHHHHHHHHHHhh
Q 009720 300 RKCPYVASMGVYVFKKDVLFKLLRWRYPT--SNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALT 372 (527)
Q Consensus 300 ~~~~~l~~~GIYif~~~iL~~ll~~~~~~--~~d~~~dii~~li~~~~V~~~~~~g~w~dIgt~~d~~~An~~ll 372 (527)
..++++++|+|+|++++|..+ +...+. ...+.+++++.+++++++.+|.++|+|.|||+|++|.+|+.++.
T Consensus 205 -~~s~~~~~GiYi~~~~i~~~l-~~~~~~~~~e~~ltd~i~~l~~~~~v~~~~~~G~w~DiG~p~~~~~a~~~~~ 277 (297)
T PRK10122 205 -LDSDLMAVGRYVLSADIWPEL-ERTEPGAWGRIQLTDAIAELAKKQSVDAMLMTGDSYDCGKKMGYMQAFVKYG 277 (297)
T ss_pred -CCccEEEEEEEEECHHHHHHH-HhCCCCCCCeeeHHHHHHHHHhCCCEEEEEeCCEEEcCCCHHHHHHHHHHHH
Confidence 124689999999999998755 433332 23456799999999999999999999999999999999999984
No 30
>cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase. N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre
Probab=100.00 E-value=7.1e-37 Score=305.62 Aligned_cols=235 Identities=22% Similarity=0.372 Sum_probs=192.9
Q ss_pred EEEEeCC--CCCccccCccCCCccceeeCCcchhHHHHHHHHHH-cCCCEEEEEeccCchhHHHHHHHhhccCCcccCCC
Q 009720 97 AIILGGG--AGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCIN-SGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (527)
Q Consensus 97 aVILAaG--~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~-~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~ 173 (527)
||||||| .||||+|||..+||||+||+|+ |||+|+|++|.+ +|+++|+|++++..+++.+|+.... ..++ .
T Consensus 1 ~iIla~G~~~GtRl~plt~~~PK~llpv~g~-plI~~~l~~l~~~~gi~~i~iv~~~~~~~i~~~l~~~~----~~~~-~ 74 (257)
T cd06428 1 AVILVGGPQKGTRFRPLSLDVPKPLFPVAGK-PMIHHHIEACAKVPDLKEVLLIGFYPESVFSDFISDAQ----QEFN-V 74 (257)
T ss_pred CEEEccCCCCCcccCCccCCCCcccCeECCe-eHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHhcc----cccC-c
Confidence 5899999 8999999999999999999999 999999999999 6999999999999999988885211 0112 1
Q ss_pred eEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeecCCHHHHHHHHHHcCCcEEEEEEEcCC
Q 009720 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGE 253 (527)
Q Consensus 174 ~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tv~~~~~~~ 253 (527)
.+.++. +.. ..||+++++.++++++. ...++|+|++||++++.|+.+++++|+++++++|+++.+++.
T Consensus 75 ~i~~~~--~~~-------~~Gt~~al~~a~~~l~~---~~~~~~lv~~gD~~~~~dl~~~~~~h~~~~~~~tl~~~~~~~ 142 (257)
T cd06428 75 PIRYLQ--EYK-------PLGTAGGLYHFRDQILA---GNPSAFFVLNADVCCDFPLQELLEFHKKHGASGTILGTEASR 142 (257)
T ss_pred eEEEec--CCc-------cCCcHHHHHHHHHHhhc---cCCCCEEEEcCCeecCCCHHHHHHHHHHcCCCEEEEEEEccc
Confidence 233332 221 26999999999988852 224789999999999999999999999999999999988765
Q ss_pred CCCCCceEEEEC-CCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCCC----
Q 009720 254 SRASDYGLVKID-NMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT---- 328 (527)
Q Consensus 254 ~~~~~~g~v~~D-~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~~---- 328 (527)
+.++.||++.+| ++|+|.+|.|||.... +.++++|+|+|++++|.. +....+.
T Consensus 143 ~~~~~yg~v~~d~~~g~v~~~~Ekp~~~~---------------------~~~~~~Giyi~~~~~~~~-i~~~~~~~~~e 200 (257)
T cd06428 143 EQASNYGCIVEDPSTGEVLHYVEKPETFV---------------------SDLINCGVYLFSPEIFDT-IKKAFQSRQQE 200 (257)
T ss_pred cccccccEEEEeCCCCeEEEEEeCCCCcc---------------------cceEEEEEEEECHHHHHH-Hhhhccccccc
Confidence 456789999998 6799999999986432 367999999999999854 4432221
Q ss_pred --------------CCchhhhhHHhhhhcCceEEEEecceEEecCCHHHHHHHHHHh
Q 009720 329 --------------SNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMAL 371 (527)
Q Consensus 329 --------------~~d~~~dii~~li~~~~V~~~~~~g~w~dIgt~~d~~~An~~l 371 (527)
..++..++++.++++.++++|.++|||.||||+++|++||+.+
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~~~~g~w~dig~~~~~~~a~~~~ 257 (257)
T cd06428 201 AQLGDDNNREGRAEVIRLEQDVLTPLAGSGKLYVYKTDDFWSQIKTAGSAIYANRLY 257 (257)
T ss_pred cccccccccccccceeeehhhhhhHHhccCCEEEecCCCeeecCCCHHHHHhHhhcC
Confidence 1235579999999999999999999999999999999999753
No 31
>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation.
Probab=100.00 E-value=1.7e-36 Score=298.28 Aligned_cols=232 Identities=26% Similarity=0.430 Sum_probs=194.6
Q ss_pred eEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCcccCCCe
Q 009720 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (527)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~~ 174 (527)
|++||||||.|+||+|+|..+||||+|++|+ |||+|+++++.++|+++|+|++++..+++.+|+. .+ . ..++
T Consensus 1 m~~iIlAaG~g~R~~~lt~~~pK~llpv~g~-pli~~~l~~l~~~g~~~v~iv~~~~~~~~~~~l~-~~-~--~~~~--- 72 (233)
T cd06425 1 MKALILVGGYGTRLRPLTLTVPKPLVEFCNK-PMIEHQIEALAKAGVKEIILAVNYRPEDMVPFLK-EY-E--KKLG--- 72 (233)
T ss_pred CcEEEecCCCccccCccccCCCCccCeECCc-chHHHHHHHHHHCCCcEEEEEeeeCHHHHHHHHh-cc-c--ccCC---
Confidence 6899999999999999999999999999999 9999999999999999999999999999988885 22 1 1122
Q ss_pred EEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeecCCHHHHHHHHHHcCCcEEEEEEEcCCC
Q 009720 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGES 254 (527)
Q Consensus 175 V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tv~~~~~~~~ 254 (527)
++++...+.. ..||+++++.++.++.. ..++|++++||++++.++.++++.|+++++++++++.+.++
T Consensus 73 ~~i~~~~~~~-------~~G~~~al~~a~~~~~~----~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 140 (233)
T cd06425 73 IKITFSIETE-------PLGTAGPLALARDLLGD----DDEPFFVLNSDVICDFPLAELLDFHKKHGAEGTILVTKVED- 140 (233)
T ss_pred eEEEeccCCC-------CCccHHHHHHHHHHhcc----CCCCEEEEeCCEeeCCCHHHHHHHHHHcCCCEEEEEEEcCC-
Confidence 4444432221 36999999999988852 23679999999999999999999999999999999988765
Q ss_pred CCCCceEEEECC-CCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCCCCCchh
Q 009720 255 RASDYGLVKIDN-MGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFG 333 (527)
Q Consensus 255 ~~~~~g~v~~D~-~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~~~~d~~ 333 (527)
++.||++.+|+ +++|.++.|||.... +.++++|+|+|++++|..+ .. ...+..
T Consensus 141 -~~~~g~v~~d~~~~~v~~~~ekp~~~~---------------------~~~~~~Giyi~~~~~l~~l-~~---~~~~~~ 194 (233)
T cd06425 141 -PSKYGVVVHDENTGRIERFVEKPKVFV---------------------GNKINAGIYILNPSVLDRI-PL---RPTSIE 194 (233)
T ss_pred -ccccCeEEEcCCCCEEEEEEECCCCCC---------------------CCEEEEEEEEECHHHHHhc-cc---Ccccch
Confidence 46799999988 799999999987431 3678999999999999654 32 222445
Q ss_pred hhhHHhhhhcCceEEEEecceEEecCCHHHHHHHHHHhh
Q 009720 334 SEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALT 372 (527)
Q Consensus 334 ~dii~~li~~~~V~~~~~~g~w~dIgt~~d~~~An~~ll 372 (527)
.++++.++++.+|.+|.++|+|.||||+++|++|+..++
T Consensus 195 ~~~~~~l~~~~~v~~~~~~g~w~digt~~~~~~a~~~~l 233 (233)
T cd06425 195 KEIFPKMASEGQLYAYELPGFWMDIGQPKDFLKGMSLYL 233 (233)
T ss_pred hhhHHHHHhcCCEEEEeeCCEEEcCCCHHHHHHHHHHhC
Confidence 689999999999999999999999999999999998764
No 32
>PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional
Probab=100.00 E-value=6.1e-36 Score=303.84 Aligned_cols=235 Identities=24% Similarity=0.435 Sum_probs=189.1
Q ss_pred CCceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEecc-CchhHHHHHHHhhccCCccc
Q 009720 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQF-NSASLNRHIARTYFGNGTNF 170 (527)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~-~~~~i~~hl~~~y~~~~~~~ 170 (527)
|+.|+|||||||.||||+|+|..+||||+||+|+ |||+|+|++|.++|+++|+|++.+ ..+.+.+|+ +++..|
T Consensus 1 m~~~kaIILAgG~GtRL~PlT~~~pK~Llpv~gk-PmI~~~l~~l~~aGi~~I~ii~~~~~~~~~~~~l-----~~g~~~ 74 (292)
T PRK15480 1 MKTRKGIILAGGSGTRLYPVTMAVSKQLLPIYDK-PMIYYPLSTLMLAGIRDILIISTPQDTPRFQQLL-----GDGSQW 74 (292)
T ss_pred CCceEEEEECCCcccccCcccCCCCceEeEECCE-EHHHHHHHHHHHCCCCEEEEEecCCchHHHHHHH-----cCcccc
Confidence 6789999999999999999999999999999999 999999999999999999987754 455565555 344455
Q ss_pred CCCeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceee-cCCHHHHHHHHHHcCCcEEEEEE
Q 009720 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY-RMDYMDFIQSHVDRDADITISCA 249 (527)
Q Consensus 171 ~~~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~-~~dl~~ll~~h~~~~ad~tv~~~ 249 (527)
+. .+++. .|.. +.||++|+..+.+++. .+++++++||+++ +.++.++++.|.+.++++|+++.
T Consensus 75 g~-~i~y~--~q~~-------~~Gta~Al~~a~~~i~------~~~~~lv~gD~i~~~~~l~~ll~~~~~~~~~~tv~~~ 138 (292)
T PRK15480 75 GL-NLQYK--VQPS-------PDGLAQAFIIGEEFIG------GDDCALVLGDNIFYGHDLPKLMEAAVNKESGATVFAY 138 (292)
T ss_pred Cc-eeEEE--ECCC-------CCCHHHHHHHHHHHhC------CCCEEEEECCeeeeccCHHHHHHHHHhCCCCeEEEEE
Confidence 42 23333 3322 3699999999999885 2568889999765 88999999999888889999988
Q ss_pred EcCCCCCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCCCC
Q 009720 250 AVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTS 329 (527)
Q Consensus 250 ~~~~~~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~~~ 329 (527)
++++ +++||++.+|++|+|++|.|||..+. ++++++|+|+|+++++. .++...+..
T Consensus 139 ~v~~--p~~yGvv~~d~~g~v~~i~EKP~~p~---------------------s~~a~~GiY~~~~~v~~-~~~~~~~~~ 194 (292)
T PRK15480 139 HVND--PERYGVVEFDQNGTAISLEEKPLQPK---------------------SNYAVTGLYFYDNDVVE-MAKNLKPSA 194 (292)
T ss_pred EcCC--cccCcEEEECCCCcEEEEEECCCCCC---------------------CCEEEEEEEEEChHHHH-HHhhcCCCC
Confidence 8865 57899999999999999999996432 47899999999999886 455443432
Q ss_pred -Cc-hhhhhHHhhhhcCceE-EEEecce-EEecCCHHHHHHHHHHhh
Q 009720 330 -ND-FGSEIIPAAIMEHDVQ-AYIFRDY-WEDIGTIKSFYEANMALT 372 (527)
Q Consensus 330 -~d-~~~dii~~li~~~~V~-~~~~~g~-w~dIgt~~d~~~An~~ll 372 (527)
.+ ..+++++.+++++++. .+..+|+ |.|+||+++|.+|+..+.
T Consensus 195 ~ge~~itd~~~~~l~~g~~~~~~~~~g~~W~DiGt~~~l~~a~~~~~ 241 (292)
T PRK15480 195 RGELEITDINRIYMEQGRLSVAMMGRGYAWLDTGTHQSLIEASNFIA 241 (292)
T ss_pred CCeeEhHHHHHHHHhcCCeEEEEecCCcEEECCCCHHHHHHHHHHHH
Confidence 22 2478999999887664 4566785 999999999999998876
No 33
>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.4e-36 Score=303.25 Aligned_cols=348 Identities=18% Similarity=0.305 Sum_probs=244.3
Q ss_pred CCceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccC-chhHHHHHHHhhccCCccc
Q 009720 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFN-SASLNRHIARTYFGNGTNF 170 (527)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~-~~~i~~hl~~~y~~~~~~~ 170 (527)
|.++++|++|||.||||--++...||||+||||+ |||+|+|++|.++|+++|+|++... ...++..|...+ ....+
T Consensus 7 ~~efqavV~a~~ggt~~p~~~~~~pKaLLPIgn~-PMi~YpL~~L~~~gfteiiVv~~e~e~~~i~~al~~~~-~l~~~- 83 (433)
T KOG1462|consen 7 MSEFQAVVLAGGGGTRMPEVTSRLPKALLPIGNK-PMILYPLNSLEQAGFTEIIVVVNEDEKLDIESALGSNI-DLKKR- 83 (433)
T ss_pred hHHhhhheeecCCceechhhhhhcchhhcccCCc-ceeeeehhHHHhcCCeEEEEEecHHHHHHHHHHHhcCC-ccccc-
Confidence 6788999999999999999999999999999999 9999999999999999999999763 334444443222 11111
Q ss_pred CCCeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeecCCHHHHHHHHHHcCCcEEEEEEE
Q 009720 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAA 250 (527)
Q Consensus 171 ~~~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tv~~~~ 250 (527)
...|++-...+.. .||+++|+.....+. .++||+++||.+.+.++..++++++..++...++...
T Consensus 84 -~~~v~ip~~~~~d--------~gtadsLr~Iy~kik------S~DflvlsCD~Vtdv~l~~lvd~FR~~d~slamli~~ 148 (433)
T KOG1462|consen 84 -PDYVEIPTDDNSD--------FGTADSLRYIYSKIK------SEDFLVLSCDFVTDVPLQPLVDKFRATDASLAMLIGN 148 (433)
T ss_pred -ccEEEeecccccc--------cCCHHHHhhhhhhhc------cCCEEEEecccccCCCcHHHHHHHhccChhHhHHhcc
Confidence 0123433322221 599999999888875 3699999999999999999999999877755544432
Q ss_pred cCC------C---CCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHH
Q 009720 251 VGE------S---RASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKL 321 (527)
Q Consensus 251 ~~~------~---~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~l 321 (527)
... . ....+.++.+++++.=..|.... .+..+.+.+..++|+-.|+. ...+.+.++.+|+|+.++++.
T Consensus 149 ~~s~~~~pgqk~k~k~~~d~igi~e~t~rl~y~~~~-~d~~~~l~i~~slL~~~prl-tl~t~L~dahiY~~k~~v~d~- 225 (433)
T KOG1462|consen 149 ALSEVPIPGQKGKKKQARDVIGINEDTERLAYSSDS-ADEEEPLVIRKSLLWNHPRL-TLTTKLVDAHIYVFKHWVIDL- 225 (433)
T ss_pred ccccccccCcccccccccceeeeccccceeEEeecC-CcCCCceehhhhhhhcCCce-EEeccccceeeeeeHHHHHHH-
Confidence 211 1 11234455565554333333221 12233456667777777765 346789999999999999974
Q ss_pred HHhhCCCCCchhhhhHHhhhhc---------------------------------CceEEEEec--ceEEecCCHHHHHH
Q 009720 322 LRWRYPTSNDFGSEIIPAAIME---------------------------------HDVQAYIFR--DYWEDIGTIKSFYE 366 (527)
Q Consensus 322 l~~~~~~~~d~~~dii~~li~~---------------------------------~~V~~~~~~--g~w~dIgt~~d~~~ 366 (527)
|.+. ++-.+|-.+++|.++++ -++++|... .-+..++|.-.|++
T Consensus 226 l~~~-~sisSfk~~f~P~lvkkQ~q~~~~~~~~~~~~l~t~~~~~~d~~~~~~d~ik~y~~~~p~e~~~~raNtL~~y~e 304 (433)
T KOG1462|consen 226 LSEK-ESISSFKADFLPYLVKKQFQKNPPLKKNETSILPTPNLNNPDGIHSPDDRIKCYAYILPTESLFVRANTLLSYME 304 (433)
T ss_pred HhcC-CcceeecccccchhhhhhhhcCCCcccccccccCCccccCcccccCcccceeeeEEEccCccceEEecchHHHHh
Confidence 4422 22234445555555532 234555554 34778999999999
Q ss_pred HH--HHhhccCCCCccCCCCCCCCCCCccCCCeeeeceeeeeeEECCCCEEc-ceeEeecEEcCCcEECCCCEEeeeEEe
Q 009720 367 AN--MALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVML 443 (527)
Q Consensus 367 An--~~ll~~~~~~~~~~~~~~i~~~~~~~~p~~i~~~~i~~s~I~~g~~I~-~~~i~~svIg~~~~I~~~~~I~~~~i~ 443 (527)
+| +.+..-.+.-.|.. +....- +.++ .+++|+++|.|+ ++.|..|+||.+|.||++|+|.+|++|
T Consensus 305 iN~~k~~~~l~~e~~~~k-------~~~~~~-~l~g----~d~iv~~~t~i~~~s~ik~SviG~nC~Ig~~~~v~nSilm 372 (433)
T KOG1462|consen 305 INRDKKLKKLCSEAKFVK-------NYVKKV-ALVG----ADSIVGDNTQIGENSNIKRSVIGSNCDIGERVKVANSILM 372 (433)
T ss_pred hhHHHHHHHhcccccccc-------chhhhe-eccc----hhhccCCCceecccceeeeeeecCCccccCCcEEEeeEee
Confidence 99 44443332222111 000000 1111 478999999999 588999999999999999999999999
Q ss_pred CCcccCchhhHHhhhcCCccceEeCCCcEEeeeEEcCCCEECCCcEEeC
Q 009720 444 GADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVN 492 (527)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~ 492 (527)
.+ +.||+++.|.|||||.+|.||.++.+.|
T Consensus 373 ~n-------------------V~vg~G~~IensIIg~gA~Ig~gs~L~n 402 (433)
T KOG1462|consen 373 DN-------------------VVVGDGVNIENSIIGMGAQIGSGSKLKN 402 (433)
T ss_pred cC-------------------cEecCCcceecceecccceecCCCeeee
Confidence 98 9999999999999999999999999987
No 34
>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase. This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.
Probab=100.00 E-value=2.6e-35 Score=291.24 Aligned_cols=232 Identities=23% Similarity=0.388 Sum_probs=187.9
Q ss_pred eEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccC-chhHHHHHHHhhccCCcccCCC
Q 009720 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFN-SASLNRHIARTYFGNGTNFGDG 173 (527)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~-~~~i~~hl~~~y~~~~~~~~~~ 173 (527)
|++||||||.||||+|+|..+||||+|++|+ |||+|+++++.++|+++|+|++++. .+++.+|+. ++..|+
T Consensus 1 m~~iIlAaG~gtRl~plt~~~pK~llpv~~~-pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~l~-----~~~~~~-- 72 (240)
T cd02538 1 MKGIILAGGSGTRLYPLTKVVSKQLLPVYDK-PMIYYPLSTLMLAGIREILIISTPEDLPLFKELLG-----DGSDLG-- 72 (240)
T ss_pred CeEEEEcCcCcccCCccccCCCceeeEECCE-EhHHHHHHHHHHCCCCEEEEEeCcchHHHHHHHHh-----cccccC--
Confidence 6899999999999999999999999999999 9999999999999999999998764 466777764 222333
Q ss_pred eEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceee-cCCHHHHHHHHHHcCCcEEEEEEEcC
Q 009720 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY-RMDYMDFIQSHVDRDADITISCAAVG 252 (527)
Q Consensus 174 ~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~-~~dl~~ll~~h~~~~ad~tv~~~~~~ 252 (527)
+++....+.. ..||+++++.++.+++ .++|++++||+++ +.++.++++.|.+.++++++++.+++
T Consensus 73 -~~i~~~~~~~-------~~G~~~al~~a~~~~~------~~~~lv~~gD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (240)
T cd02538 73 -IRITYAVQPK-------PGGLAQAFIIGEEFIG------DDPVCLILGDNIFYGQGLSPILQRAAAQKEGATVFGYEVN 138 (240)
T ss_pred -ceEEEeeCCC-------CCCHHHHHHHHHHhcC------CCCEEEEECCEEEccHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 3333333321 2699999999998885 3689999999865 66799999999988899999988876
Q ss_pred CCCCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCCC--CC
Q 009720 253 ESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT--SN 330 (527)
Q Consensus 253 ~~~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~~--~~ 330 (527)
+ ++.||.+.+|++|+|++|.|||.... +..+++|+|+|++++|. +++...+. ..
T Consensus 139 ~--~~~~g~v~~d~~g~v~~~~ekp~~~~---------------------~~~~~~Giyi~~~~~l~-~l~~~~~~~~~~ 194 (240)
T cd02538 139 D--PERYGVVEFDENGRVLSIEEKPKKPK---------------------SNYAVTGLYFYDNDVFE-IAKQLKPSARGE 194 (240)
T ss_pred c--hhcCceEEecCCCcEEEEEECCCCCC---------------------CCeEEEEEEEECHHHHH-HHHhcCCCCCCe
Confidence 5 46799999999999999999986432 35789999999999884 56544332 22
Q ss_pred chhhhhHHhhhhcCceEEEEec--ceEEecCCHHHHHHHHHHhh
Q 009720 331 DFGSEIIPAAIMEHDVQAYIFR--DYWEDIGTIKSFYEANMALT 372 (527)
Q Consensus 331 d~~~dii~~li~~~~V~~~~~~--g~w~dIgt~~d~~~An~~ll 372 (527)
.+.+++++.+++++++.++.++ |+|.||||+++|++||..+.
T Consensus 195 ~~l~d~~~~l~~~g~~~~~~~~~~g~w~digt~~~~~~a~~~~~ 238 (240)
T cd02538 195 LEITDVNNEYLEKGKLSVELLGRGFAWLDTGTHESLLEASNFVQ 238 (240)
T ss_pred EEhHHHHHHHHHhCCeEEEEeCCCcEEEeCCCHHHHHHHHHHHh
Confidence 2346899999988888787776 99999999999999998653
No 35
>TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form. This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.
Probab=100.00 E-value=3.1e-35 Score=298.10 Aligned_cols=231 Identities=26% Similarity=0.464 Sum_probs=187.6
Q ss_pred EEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEec-cCchhHHHHHHHhhccCCcccCCCe
Q 009720 96 AAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQ-FNSASLNRHIARTYFGNGTNFGDGF 174 (527)
Q Consensus 96 ~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~-~~~~~i~~hl~~~y~~~~~~~~~~~ 174 (527)
+|||||||.||||+|+|..+||||+||+|+ |||+|+|+++.++|+++|+|+++ +..+.+.+|+ +++..|+
T Consensus 1 kaIILAgG~GtRL~plT~~~pK~Llpv~gk-PmI~~~L~~l~~aGi~~I~iv~~~~~~~~~~~~l-----g~g~~~g--- 71 (286)
T TIGR01207 1 KGIILAGGSGTRLYPITRAVSKQLLPIYDK-PMIYYPLSTLMLAGIRDILIISTPQDTPRFQQLL-----GDGSQWG--- 71 (286)
T ss_pred CEEEECCCCCccCCcccCCCCceeeEECCE-EhHHHHHHHHHHCCCCEEEEEecCCcHHHHHHHh-----ccccccC---
Confidence 589999999999999999999999999999 99999999999999999998885 4555665555 3444554
Q ss_pred EEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCcee-ecCCHHHHHHHHHHcCCcEEEEEEEcCC
Q 009720 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHL-YRMDYMDFIQSHVDRDADITISCAAVGE 253 (527)
Q Consensus 175 V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l-~~~dl~~ll~~h~~~~ad~tv~~~~~~~ 253 (527)
+++....|.. +.||++|++.+++++. .+++++++||++ ++.++.++++.|.+.++++|+++.++++
T Consensus 72 ~~i~~~~q~~-------~~Gta~al~~a~~~l~------~~~~~li~gD~i~~~~~l~~ll~~~~~~~~~~ti~~~~v~~ 138 (286)
T TIGR01207 72 VNLSYAVQPS-------PDGLAQAFIIGEDFIG------GDPSALVLGDNIFYGHDLSDLLKRAAARESGATVFAYQVSD 138 (286)
T ss_pred ceEEEEEccC-------CCCHHHHHHHHHHHhC------CCCEEEEECCEeccccCHHHHHHHHHhcCCCcEEEEEEccC
Confidence 3444444432 3699999999999985 267889999975 5789999999998888899999988876
Q ss_pred CCCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCCC-CCc-
Q 009720 254 SRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT-SND- 331 (527)
Q Consensus 254 ~~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~~-~~d- 331 (527)
+++||++.+|++|+|++|.|||..+. ++++++|+|+|+++++. +++...++ ..+
T Consensus 139 --p~~yGvv~~d~~g~V~~i~EKp~~~~---------------------s~~~~~GiYi~~~~i~~-~l~~~~~~~~ge~ 194 (286)
T TIGR01207 139 --PERYGVVEFDSNGRAISIEEKPAQPK---------------------SNYAVTGLYFYDNRVVE-IARQLKPSARGEL 194 (286)
T ss_pred --HHHCceEEECCCCeEEEEEECCCCCC---------------------CCEEEEEEEEEchHHHH-HHhhcCCCCCCcE
Confidence 56899999999999999999996432 46899999999999875 55554442 222
Q ss_pred hhhhhHHhhhhcCceEEEEe-cce-EEecCCHHHHHHHHHHhh
Q 009720 332 FGSEIIPAAIMEHDVQAYIF-RDY-WEDIGTIKSFYEANMALT 372 (527)
Q Consensus 332 ~~~dii~~li~~~~V~~~~~-~g~-w~dIgt~~d~~~An~~ll 372 (527)
+.+++++.+++++++..+.+ +|+ |.|+||+++|++|+..+.
T Consensus 195 eitdv~~~~l~~g~l~v~~~~~g~~W~DiGt~~~l~~A~~~~~ 237 (286)
T TIGR01207 195 EITDLNRVYLEEGRLSVELLGRGYAWLDTGTHDSLLEASNFIQ 237 (286)
T ss_pred eHHHHHHHHHHcCCcEEEEecCCCEEEeCCCHHHHHHHHHHHH
Confidence 45799999999877666665 676 999999999999998764
No 36
>cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose. Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity.
Probab=100.00 E-value=3.9e-35 Score=294.47 Aligned_cols=244 Identities=22% Similarity=0.306 Sum_probs=190.1
Q ss_pred eEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhh-ccCC-cccCC
Q 009720 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-FGNG-TNFGD 172 (527)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y-~~~~-~~~~~ 172 (527)
|++||||||.||||+|+|..+||||+||+|+ |||+|+|+++.++|+++|+|+++++.+++.+|+...+ +... ...+.
T Consensus 1 mkaiIlAaG~gtRl~plt~~~pK~llpv~gk-pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~ 79 (267)
T cd02541 1 RKAVIPAAGLGTRFLPATKAIPKEMLPIVDK-PVIQYIVEEAVAAGIEDIIIVTGRGKRAIEDHFDRSYELEETLEKKGK 79 (267)
T ss_pred CeEEEEcCCCCccCCCcccCCCceeeEECCE-EHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHhCCcHHHHHHHHhccc
Confidence 6899999999999999999999999999999 9999999999999999999999999999999985322 1100 00000
Q ss_pred -----------CeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeecC---CHHHHHHHHH
Q 009720 173 -----------GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRM---DYMDFIQSHV 238 (527)
Q Consensus 173 -----------~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~---dl~~ll~~h~ 238 (527)
..+++....| .+.+||+++|+.++.+++ .++|++++||+++.. ++.++++.|+
T Consensus 80 ~~~~~~~~~~~~~~~i~~~~~-------~~~~Gt~~al~~~~~~i~------~~~~lv~~gD~~~~~~~~~~~~l~~~~~ 146 (267)
T cd02541 80 TDLLEEVRIISDLANIHYVRQ-------KEPLGLGHAVLCAKPFIG------DEPFAVLLGDDLIDSKEPCLKQLIEAYE 146 (267)
T ss_pred HHHhhhhhcccCCceEEEEEc-------CCCCChHHHHHHHHHHhC------CCceEEEECCeEEeCCchHHHHHHHHHH
Confidence 0122222222 234699999999998885 278999999998864 4999999998
Q ss_pred HcCCcEEEEEEEcCCCCCCCceEEEECC----CCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEe
Q 009720 239 DRDADITISCAAVGESRASDYGLVKIDN----MGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFK 314 (527)
Q Consensus 239 ~~~ad~tv~~~~~~~~~~~~~g~v~~D~----~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~ 314 (527)
+.+++ ++++.+++.+.+..||++.+|+ +++|..+.|||..... .+.++++|+|+|+
T Consensus 147 ~~~~~-~~~~~~~~~~~~~~~g~v~~d~~~~~~~~v~~~~Ekp~~~~~-------------------~~~~~~~Giyi~~ 206 (267)
T cd02541 147 KTGAS-VIAVEEVPPEDVSKYGIVKGEKIDGDVFKVKGLVEKPKPEEA-------------------PSNLAIVGRYVLT 206 (267)
T ss_pred HhCCC-EEEEEEcChhcCccceEEEeecCCCCceEEeEEEECCCCCCC-------------------CCceEEEEEEEcC
Confidence 87776 4566666654567899999985 3589999999864211 2367899999999
Q ss_pred HHHHHHHHHhhCC-CCCchhhhhHHhhhhcCceEEEEecceEEecCCHHHHHHHHHHhh
Q 009720 315 KDVLFKLLRWRYP-TSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALT 372 (527)
Q Consensus 315 ~~iL~~ll~~~~~-~~~d~~~dii~~li~~~~V~~~~~~g~w~dIgt~~d~~~An~~ll 372 (527)
+++|..+.+.... ....+..++++.++++++|++|.++|||.||||+++|++||+++.
T Consensus 207 ~~~~~~l~~~~~~~~~e~~~~d~i~~l~~~~~v~~~~~~g~w~digt~~~y~~a~~~~~ 265 (267)
T cd02541 207 PDIFDILENTKPGKGGEIQLTDAIAKLLEEEPVYAYVFEGKRYDCGNKLGYLKATVEFA 265 (267)
T ss_pred HHHHHHHHhCCCCCCCcEEHHHHHHHHHhcCCEEEEEeeeEEEeCCCHHHHHHHHHHHh
Confidence 9988755331111 122446789999999899999999999999999999999999886
No 37
>TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase. Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene.
Probab=100.00 E-value=7.7e-35 Score=290.81 Aligned_cols=233 Identities=18% Similarity=0.295 Sum_probs=189.8
Q ss_pred EEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhh-ccCCcccC--C
Q 009720 96 AAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-FGNGTNFG--D 172 (527)
Q Consensus 96 ~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y-~~~~~~~~--~ 172 (527)
+|||||||.||||+|+|..+||||+||+|+ |||+|+++++.++|+++|+|++++..+++.+|+.+.. .+.+.++. .
T Consensus 1 kavilaaG~gtRl~~~t~~~pK~llpv~g~-pii~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 79 (254)
T TIGR02623 1 KAVILAGGLGTRISEETHLRPKPMVEIGGK-PILWHIMKIYSHHGINDFIICCGYKGYVIKEYFANYFLHMSDVTFHMAD 79 (254)
T ss_pred CEEEEcCccccccCccccCCCcceeEECCE-EHHHHHHHHHHHCCCCEEEEEcCCCHHHHHHHHHhhhhcccCeeEEecc
Confidence 589999999999999999999999999999 9999999999999999999999999999999985311 11111110 0
Q ss_pred C------------eEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeecCCHHHHHHHHHHc
Q 009720 173 G------------FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDR 240 (527)
Q Consensus 173 ~------------~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~ 240 (527)
+ .+++.. +. .+.||+++|+++++++. .++|++++||++++.|+.++++.|.+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~--~~-------~~~gt~~al~~~~~~i~------~e~flv~~gD~i~~~dl~~~~~~h~~~ 144 (254)
T TIGR02623 80 NTMEVHHKRVEPWRVTLVD--TG-------ESTQTGGRLKRVREYLD------DEAFCFTYGDGVADIDIKALIAFHRKH 144 (254)
T ss_pred cccccccccCCccceeeee--cC-------CcCCcHHHHHHHHHhcC------CCeEEEEeCCeEecCCHHHHHHHHHHc
Confidence 0 011111 11 13699999999998874 378999999999999999999999999
Q ss_pred CCcEEEEEEEcCCCCCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHH
Q 009720 241 DADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFK 320 (527)
Q Consensus 241 ~ad~tv~~~~~~~~~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ 320 (527)
++++|+++.+ + +..||.+.+|+ ++|+.|.|||... +.++++|+|+|++++|.
T Consensus 145 ~~d~tl~~~~--~--~~~yG~v~~d~-~~V~~~~Ekp~~~----------------------~~~i~~Giyi~~~~il~- 196 (254)
T TIGR02623 145 GKKATVTAVQ--P--PGRFGALDLEG-EQVTSFQEKPLGD----------------------GGWINGGFFVLNPSVLD- 196 (254)
T ss_pred CCCEEEEEec--C--CCcccEEEECC-CeEEEEEeCCCCC----------------------CCeEEEEEEEEcHHHHh-
Confidence 9999987652 2 46799999985 6999999998532 25789999999999984
Q ss_pred HHHhhCCCCCchhhhhHHhhhhcCceEEEEecceEEecCCHHHHHHHHHHhhccC
Q 009720 321 LLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKES 375 (527)
Q Consensus 321 ll~~~~~~~~d~~~dii~~li~~~~V~~~~~~g~w~dIgt~~d~~~An~~ll~~~ 375 (527)
++++ ...++.+++++.+++++++++|.++|||.||||+++|.+|+..+....
T Consensus 197 ~l~~---~~~~~~~d~i~~l~~~~~v~~~~~~g~w~dIgt~~~~~~~~~~~~~~~ 248 (254)
T TIGR02623 197 LIDG---DATVWEQEPLETLAQRGELSAYEHSGFWQPMDTLRDKNYLEELWESGR 248 (254)
T ss_pred hccc---cCchhhhhHHHHHHhCCCEEEEeCCCEEecCCchHHHHHHHHHHHcCC
Confidence 5553 233677899999999999999999999999999999999999987654
No 38
>TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase. Built to distinquish between the highly similar genes galU and galF
Probab=100.00 E-value=5.5e-35 Score=292.16 Aligned_cols=239 Identities=21% Similarity=0.288 Sum_probs=186.2
Q ss_pred eEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhh-cc-----CCc
Q 009720 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-FG-----NGT 168 (527)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y-~~-----~~~ 168 (527)
|++||||||.||||+|+|..+||||+||+|+ |||+|+|+++.++|+++|+|+++++.+++.+|+...+ +. .+.
T Consensus 1 m~avIlAaG~gtRl~plt~~~pK~llpi~g~-pli~~~l~~l~~~gi~~v~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~ 79 (260)
T TIGR01099 1 RKAVIPAAGLGTRFLPATKAIPKEMLPIVDK-PLIQYVVEEAVEAGIEDILIVTGRGKRAIEDHFDTSYELEHQLEKRGK 79 (260)
T ss_pred CeEEEEcccCcccCCCcccCCCceeEEECCE-EHHHHHHHHHHhCCCCEEEEEeCCcHHHHHHHhcccHHHHHHHHhhhh
Confidence 6899999999999999999999999999999 9999999999999999999999999999999986332 11 000
Q ss_pred ccC-------CCeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeecC---CHHHHHHHHH
Q 009720 169 NFG-------DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRM---DYMDFIQSHV 238 (527)
Q Consensus 169 ~~~-------~~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~---dl~~ll~~h~ 238 (527)
.+. ...+.+....+ .+..||+++++.+++++. .++|++++||+++.. ++.++++.|.
T Consensus 80 ~~~~~~~~~~~~~~~i~~~~~-------~~~~G~~~al~~~~~~~~------~~~~lv~~gD~~~~~~~~~~~~l~~~~~ 146 (260)
T TIGR01099 80 EELLKEVRSISPLATIFYVRQ-------KEQKGLGHAVLCAEPFVG------DEPFAVILGDDIVVSEEPALKQMIDLYE 146 (260)
T ss_pred HHHHHHhhhccccceEEEEec-------CCCCCHHHHHHHHHHhhC------CCCEEEEeccceecCCcHHHHHHHHHHH
Confidence 000 00112212122 234699999999998874 378999999998854 6999999999
Q ss_pred HcCCcEEEEEEEcCCCCCCCceEEEECC----CCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEe
Q 009720 239 DRDADITISCAAVGESRASDYGLVKIDN----MGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFK 314 (527)
Q Consensus 239 ~~~ad~tv~~~~~~~~~~~~~g~v~~D~----~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~ 314 (527)
++++++ +++..++.+.+++||++.+|+ +++|+.|.|||..... .+.++++|+|+|+
T Consensus 147 ~~~~~i-i~~~~~~~~~~~~~g~v~~d~~~~~~~~v~~~~Ekp~~~~~-------------------~~~~~~~Giyi~~ 206 (260)
T TIGR01099 147 KYGCSI-IAVEEVPKEEVSKYGVIDGEGVEEGLYEIKDMVEKPKPEEA-------------------PSNLAIVGRYVLT 206 (260)
T ss_pred HhCCCE-EEEEECChhhcccCceEEeccccCCceeEEEEEECCCCCCC-------------------CCceEEEEEEECC
Confidence 888886 566666655567899999872 3799999999953211 1357899999999
Q ss_pred HHHHHHHHHhhCCC-CCchhhhhHHhhhhcCceEEEEecceEEecCCHHHHHHH
Q 009720 315 KDVLFKLLRWRYPT-SNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEA 367 (527)
Q Consensus 315 ~~iL~~ll~~~~~~-~~d~~~dii~~li~~~~V~~~~~~g~w~dIgt~~d~~~A 367 (527)
+++|..+.+..... ...+..++++.+++++++++|.++|||.||||+++|++|
T Consensus 207 ~~~~~~l~~~~~~~~~~~~l~d~i~~l~~~~~v~~~~~~g~w~digs~~~y~~a 260 (260)
T TIGR01099 207 PDIFDLLEETPPGAGGEIQLTDALRKLLEKETVYAYKFKGKRYDCGSKLGYLKA 260 (260)
T ss_pred HHHHHHHHhCCCCCCCceeHHHHHHHHHhcCCEEEEEcceEEEeCCCHHHHhhC
Confidence 99887654322221 223457899999999999999999999999999999875
No 39
>PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional
Probab=100.00 E-value=2.9e-34 Score=293.14 Aligned_cols=245 Identities=22% Similarity=0.316 Sum_probs=194.1
Q ss_pred CCCceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhh-ccCC--
Q 009720 91 DPKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-FGNG-- 167 (527)
Q Consensus 91 ~~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y-~~~~-- 167 (527)
+++-|++||||||.||||+|+|..+||||+||+|+ |+|+|+|+++.++|+++|+|++++..+++.+|+...+ ++..
T Consensus 5 ~~~~~~aiIlaaG~g~Rl~~~t~~~pK~l~pv~g~-pii~~~l~~l~~~gi~~i~vv~~~~~~~i~~~~~~~~~~~~~l~ 83 (302)
T PRK13389 5 NTKVKKAVIPVAGLGTRMLPATKAIPKEMLPLVDK-PLIQYVVNECIAAGITEIVLVTHSSKNSIENHFDTSFELEAMLE 83 (302)
T ss_pred cccceEEEEECCcCCccCCCccCCCCceeeEECCE-EHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHccchhhhhhhh
Confidence 35679999999999999999999999999999999 9999999999999999999999999999999985322 2100
Q ss_pred ----cccCC-------CeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeec--------C
Q 009720 168 ----TNFGD-------GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYR--------M 228 (527)
Q Consensus 168 ----~~~~~-------~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~--------~ 228 (527)
..+.. ....+....|. ...||++|+++++.++. .++|+|++||++++ .
T Consensus 84 ~~~~~~~~~e~~~i~~~~~~i~~~~q~-------~~~Gtg~Av~~a~~~~~------~~~~lVl~gD~~~~~~~~~~~~~ 150 (302)
T PRK13389 84 KRVKRQLLDEVQSICPPHVTIMQVRQG-------LAKGLGHAVLCAHPVVG------DEPVAVILPDVILDEYESDLSQD 150 (302)
T ss_pred hhhhhHHHHhhhhccccCceEEEeecC-------CCCChHHHHHHHHHHcC------CCCEEEEeCcceecccccccccc
Confidence 00000 00122222222 23699999999988874 37899999999874 7
Q ss_pred CHHHHHHHHHHcCCcEEEEEEEcCCCCCCCceEEEECC-------CCceEEEEecCCccccccccccccccCCCcccccc
Q 009720 229 DYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDN-------MGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARK 301 (527)
Q Consensus 229 dl~~ll~~h~~~~ad~tv~~~~~~~~~~~~~g~v~~D~-------~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~ 301 (527)
++.++++.|.+++++ ++++.++++ +..||++.+|+ +++|.+|.|||.....
T Consensus 151 dl~~l~~~h~~~~~~-tl~~~~~~~--~~~yGvv~~~~~~~~~~~~~~V~~~~EKp~~~~~------------------- 208 (302)
T PRK13389 151 NLAEMIRRFDETGHS-QIMVEPVAD--VTAYGVVDCKGVELAPGESVPMVGVVEKPKADVA------------------- 208 (302)
T ss_pred cHHHHHHHHHhcCCC-EEEEEEccc--CCcceEEEecCcccccCCcceEEEEEECCCCCCC-------------------
Confidence 999999999888876 777777754 56899998863 4589999999974211
Q ss_pred CCceeeeeEEEEeHHHHHHHHHhhCCC--CCchhhhhHHhhhhcCceEEEEecceEEecCCHHHHHHHHHHhh
Q 009720 302 CPYVASMGVYVFKKDVLFKLLRWRYPT--SNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALT 372 (527)
Q Consensus 302 ~~~l~~~GIYif~~~iL~~ll~~~~~~--~~d~~~dii~~li~~~~V~~~~~~g~w~dIgt~~d~~~An~~ll 372 (527)
.+.++++|+|+|++++| .+++...+. ...+.+++++.++++.++++|.++|+|.|||||++|.+|++++.
T Consensus 209 ~s~~~~~GiYi~~~~il-~~l~~~~~~~~~e~~l~d~i~~l~~~~~v~~~~~~G~w~DIGtpe~~~~a~~~~~ 280 (302)
T PRK13389 209 PSNLAIVGRYVLSADIW-PLLAKTPPGAGDEIQLTDAIDMLIEKETVEAYHMKGKSHDCGNKLGYMQAFVEYG 280 (302)
T ss_pred CccEEEEEEEEECHHHH-HHHHhCCCCCCCeeeHHHHHHHHHHcCCEEEEEeeeEEEeCCCHHHHHHHHHHHH
Confidence 13679999999999998 466654332 23456899999999999999999999999999999999999975
No 40
>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=100.00 E-value=2.5e-34 Score=280.39 Aligned_cols=219 Identities=21% Similarity=0.306 Sum_probs=181.8
Q ss_pred EEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCcccCCCeE
Q 009720 96 AAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFV 175 (527)
Q Consensus 96 ~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~~V 175 (527)
+|||||||.|+||+|+|..+||||+|++|+ |||+|+++++.++|+++|+|+++++.+++.+|+... .++ +
T Consensus 1 kaiIlaaG~g~Rl~plt~~~pK~llpi~g~-~li~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~------~~~---~ 70 (221)
T cd06422 1 KAMILAAGLGTRMRPLTDTRPKPLVPVAGK-PLIDHALDRLAAAGIRRIVVNTHHLADQIEAHLGDS------RFG---L 70 (221)
T ss_pred CEEEEcCCCCCccccccCCCCCceeeECCE-EHHHHHHHHHHHCCCCEEEEEccCCHHHHHHHHhcc------cCC---c
Confidence 589999999999999999999999999999 999999999999999999999999999998888631 122 3
Q ss_pred EEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeecCCHHHHHHHHH--HcCCcEEEEEEEcCC
Q 009720 176 EVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHV--DRDADITISCAAVGE 253 (527)
Q Consensus 176 ~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~--~~~ad~tv~~~~~~~ 253 (527)
.+....+. .+..||+++++.++.++. .++|++++||++++.++.++++.|. +.++++++...+.+.
T Consensus 71 ~i~~~~~~------~~~~g~~~~l~~~~~~~~------~~~~lv~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (221)
T cd06422 71 RITISDEP------DELLETGGGIKKALPLLG------DEPFLVVNGDILWDGDLAPLLLLHAWRMDALLLLLPLVRNPG 138 (221)
T ss_pred eEEEecCC------CcccccHHHHHHHHHhcC------CCCEEEEeCCeeeCCCHHHHHHHHHhccCCCceEEEEEEcCC
Confidence 33332222 023699999999998885 2789999999999999999999998 456666666655543
Q ss_pred CCCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCCCCCchh
Q 009720 254 SRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFG 333 (527)
Q Consensus 254 ~~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~~~~d~~ 333 (527)
...||.+.+|++|+|..+.|||.. .++++|+|+|++++|..+.+. ....
T Consensus 139 --~~~~g~v~~d~~~~v~~~~~~~~~------------------------~~~~~Giyi~~~~~l~~l~~~-----~~~~ 187 (221)
T cd06422 139 --HNGVGDFSLDADGRLRRGGGGAVA------------------------PFTFTGIQILSPELFAGIPPG-----KFSL 187 (221)
T ss_pred --CCCcceEEECCCCcEeecccCCCC------------------------ceEEEEEEEEcHHHHhhCCcC-----cccH
Confidence 567999999999999999988742 468999999999998765332 2335
Q ss_pred hhhHHhhhhcCceEEEEecceEEecCCHHHHHHH
Q 009720 334 SEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEA 367 (527)
Q Consensus 334 ~dii~~li~~~~V~~~~~~g~w~dIgt~~d~~~A 367 (527)
+++++.+++++++.+|.++|||.||||++||.+|
T Consensus 188 ~d~~~~l~~~~~~~~~~~~g~w~di~t~~~~~~a 221 (221)
T cd06422 188 NPLWDRAIAAGRLFGLVYDGLWFDVGTPERLLAA 221 (221)
T ss_pred HHHHHHHHHcCCeEEEecCCEEEcCCCHHHHhhC
Confidence 7899999999999999999999999999999875
No 41
>cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose. Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity.
Probab=100.00 E-value=2.1e-33 Score=280.01 Aligned_cols=242 Identities=17% Similarity=0.265 Sum_probs=190.0
Q ss_pred EEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhh-ccCCccc--CCC
Q 009720 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-FGNGTNF--GDG 173 (527)
Q Consensus 97 aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y-~~~~~~~--~~~ 173 (527)
|||||||.||||+|+|..+||||+||+|+ |||+|+++++.++|+++|+|++++..+++.+|+.+.+ ++....+ ..+
T Consensus 1 aiilaaG~g~Rl~plt~~~pK~llpv~~~-p~i~~~~~~~~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 79 (253)
T cd02524 1 VVILAGGLGTRLSEETELKPKPMVEIGGR-PILWHIMKIYSHYGHNDFILCLGYKGHVIKEYFLNYFLHNSDVTIDLGTN 79 (253)
T ss_pred CEEEecCCccccCCccCCCCceEEEECCE-EHHHHHHHHHHhCCCceEEEECCCCHHHHHHHHHhhhhhcCceeEeeccc
Confidence 69999999999999999999999999999 9999999999999999999999999999999986432 1111111 011
Q ss_pred eEEEeccccCC-C--CCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeecCCHHHHHHHHHHcCCcEEEEEEE
Q 009720 174 FVEVLAATQTP-G--ESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAA 250 (527)
Q Consensus 174 ~V~vl~~~q~~-~--~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tv~~~~ 250 (527)
.+.++...... . ...+.-..||+++++++++++. ..++|++++||++++.++.++++.|.+.++++|+++..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~t~~al~~a~~~~~-----~~~~~lv~~gD~i~~~dl~~ll~~h~~~~~~~tl~~~~ 154 (253)
T cd02524 80 RIELHNSDIEDWKVTLVDTGLNTMTGGRLKRVRRYLG-----DDETFMLTYGDGVSDVNINALIEFHRSHGKLATVTAVH 154 (253)
T ss_pred ceeeecccccccceeecccCcccccHHHHHHHHHhcC-----CCCeEEEEcCCEEECCCHHHHHHHHHHcCCCEEEEEec
Confidence 12222210000 0 0000002579999999998874 12789999999999999999999999999999987753
Q ss_pred cCCCCCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCCCCC
Q 009720 251 VGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSN 330 (527)
Q Consensus 251 ~~~~~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~~~~ 330 (527)
..+.||.+.+|++|+|..+.|||... +..+++|+|+|++++|.. ++.. ..
T Consensus 155 ----~~~~~g~v~~d~~g~V~~~~ekp~~~----------------------~~~i~~Giyi~~~~l~~~-l~~~---~~ 204 (253)
T cd02524 155 ----PPGRFGELDLDDDGQVTSFTEKPQGD----------------------GGWINGGFFVLEPEVFDY-IDGD---DT 204 (253)
T ss_pred ----CCCcccEEEECCCCCEEEEEECCCCC----------------------CceEEEEEEEECHHHHHh-hccc---cc
Confidence 24679999999999999999998642 146899999999999854 3332 34
Q ss_pred chhhhhHHhhhhcCceEEEEecceEEecCCHHHHHHHHHHhhcc
Q 009720 331 DFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKE 374 (527)
Q Consensus 331 d~~~dii~~li~~~~V~~~~~~g~w~dIgt~~d~~~An~~ll~~ 374 (527)
++..++++.+++++++++|.++|+|.||+|+++|.+|+..+...
T Consensus 205 ~~~~d~l~~li~~~~v~~~~~~g~w~~I~t~~~~~~~~~~~~~~ 248 (253)
T cd02524 205 VFEREPLERLAKDGELMAYKHTGFWQCMDTLRDKQTLEELWNSG 248 (253)
T ss_pred hhhHHHHHHHHhcCCEEEEecCCEEEeCcCHHHHHHHHHHHHcC
Confidence 66779999999999999999999999999999999999877543
No 42
>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase. This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in
Probab=100.00 E-value=2.7e-33 Score=275.57 Aligned_cols=232 Identities=26% Similarity=0.403 Sum_probs=190.2
Q ss_pred eEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCcccCCCe
Q 009720 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (527)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~~ 174 (527)
|+|||||||.|+||+|+|..+||||+||+|+ |||+|+++++.++|+++|+|++++..+++.+|+.+. ..|+ ..
T Consensus 1 m~avIlAaG~g~Rl~plt~~~pK~l~~i~g~-~li~~~l~~l~~~~~~~i~vv~~~~~~~~~~~~~~~-----~~~~-~~ 73 (236)
T cd04189 1 MKGLILAGGKGTRLRPLTYTRPKQLIPVAGK-PIIQYAIEDLREAGIEDIGIVVGPTGEEIKEALGDG-----SRFG-VR 73 (236)
T ss_pred CeEEEECCCccccccccccCCCceeeEECCc-chHHHHHHHHHHCCCCEEEEEcCCCHHHHHHHhcch-----hhcC-Ce
Confidence 7899999999999999999999999999999 999999999999999999999999888888877521 1222 12
Q ss_pred EEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeecCCHHHHHHHHHHcCCcEEEEEEEcCCC
Q 009720 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGES 254 (527)
Q Consensus 175 V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tv~~~~~~~~ 254 (527)
+.++. +. +..||+++++.++.++. .++|++++||++++.++.++++.|.+.++++++.+.+.++
T Consensus 74 i~~~~--~~-------~~~g~~~sl~~a~~~i~------~~~~li~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 137 (236)
T cd04189 74 ITYIL--QE-------EPLGLAHAVLAARDFLG------DEPFVVYLGDNLIQEGISPLVRDFLEEDADASILLAEVED- 137 (236)
T ss_pred EEEEE--CC-------CCCChHHHHHHHHHhcC------CCCEEEEECCeecCcCHHHHHHHHHhcCCceEEEEEECCC-
Confidence 33332 21 23699999999998774 3689999999999999999999999999999999888765
Q ss_pred CCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCCC--CCch
Q 009720 255 RASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT--SNDF 332 (527)
Q Consensus 255 ~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~~--~~d~ 332 (527)
+..||++.+|+ ++|..+.|||.... +.++++|+|+|++++|..+ +...+. ...+
T Consensus 138 -~~~~g~~~~d~-~~v~~~~ek~~~~~---------------------~~~~~~Giy~~~~~~~~~l-~~~~~~~~~~~~ 193 (236)
T cd04189 138 -PRRFGVAVVDD-GRIVRLVEKPKEPP---------------------SNLALVGVYAFTPAIFDAI-SRLKPSWRGELE 193 (236)
T ss_pred -cccceEEEEcC-CeEEEEEECCCCCC---------------------CCEEEEEEEEeCHHHHHHH-HhcCCCCCCeEE
Confidence 45689888875 59999999986431 3578999999999998644 433222 2234
Q ss_pred hhhhHHhhhhc-CceEEEEecceEEecCCHHHHHHHHHHhhc
Q 009720 333 GSEIIPAAIME-HDVQAYIFRDYWEDIGTIKSFYEANMALTK 373 (527)
Q Consensus 333 ~~dii~~li~~-~~V~~~~~~g~w~dIgt~~d~~~An~~ll~ 373 (527)
..++++.++++ .+|.+|.++++|.||||++||.+||+.+++
T Consensus 194 ~~d~~~~~i~~g~~v~~~~~~~~~~~i~t~~dl~~a~~~~l~ 235 (236)
T cd04189 194 ITDAIQWLIDRGRRVGYSIVTGWWKDTGTPEDLLEANRLLLD 235 (236)
T ss_pred HHHHHHHHHHcCCcEEEEEcCceEEeCCCHHHHHHHHHHHHh
Confidence 56889998876 579999999999999999999999999875
No 43
>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases. WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars.
Probab=100.00 E-value=1.4e-32 Score=266.92 Aligned_cols=223 Identities=25% Similarity=0.424 Sum_probs=184.7
Q ss_pred EEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCcccCCCeEE
Q 009720 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVE 176 (527)
Q Consensus 97 aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~~V~ 176 (527)
|||||||.|+||+|+|..+||+|+|++|+ |||+|+++++.++|+++|+|+++++.+.+.+|+.+.+ .++. .+.
T Consensus 1 aiIlaaG~g~R~~~~t~~~pK~ll~i~g~-pli~~~l~~l~~~g~~~v~vv~~~~~~~i~~~~~~~~-----~~~~-~~~ 73 (223)
T cd06915 1 AVILAGGLGTRLRSVVKDLPKPLAPVAGR-PFLEYLLEYLARQGISRIVLSVGYLAEQIEEYFGDGY-----RGGI-RIY 73 (223)
T ss_pred CEEecCCcccccCcccCCCCccccEECCc-chHHHHHHHHHHCCCCEEEEEcccCHHHHHHHHcCcc-----ccCc-eEE
Confidence 69999999999999999999999999999 9999999999999999999999998888888875322 1221 122
Q ss_pred EeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeecCCHHHHHHHHHHcCCcEEEEEEEcCCCCC
Q 009720 177 VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRA 256 (527)
Q Consensus 177 vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tv~~~~~~~~~~ 256 (527)
+... +. ..|++++++.++.++. .++|++++||+++..++.++++.|++.+.++++.+.+.++ .
T Consensus 74 ~~~~-~~--------~~G~~~~l~~a~~~~~------~~~~lv~~~D~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~ 136 (223)
T cd06915 74 YVIE-PE--------PLGTGGAIKNALPKLP------EDQFLVLNGDTYFDVDLLALLAALRASGADATMALRRVPD--A 136 (223)
T ss_pred EEEC-CC--------CCcchHHHHHHHhhcC------CCCEEEEECCcccCCCHHHHHHHHHhCCCcEEEEEEECCC--C
Confidence 2221 11 2599999999988773 3789999999999999999999998888889988887654 4
Q ss_pred CCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCCCCCchhhhh
Q 009720 257 SDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEI 336 (527)
Q Consensus 257 ~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~~~~d~~~di 336 (527)
..|+.+.+|++|+|..+.|||... .++++++|+|+|++++|..+... ..++.+++
T Consensus 137 ~~~~~v~~d~~~~v~~~~ek~~~~---------------------~~~~~~~Giy~~~~~~l~~~~~~----~~~~~~~~ 191 (223)
T cd06915 137 SRYGNVTVDGDGRVIAFVEKGPGA---------------------APGLINGGVYLLRKEILAEIPAD----AFSLEADV 191 (223)
T ss_pred CcceeEEECCCCeEEEEEeCCCCC---------------------CCCcEEEEEEEECHHHHhhCCcc----CCChHHHH
Confidence 578999999889999999997643 13678999999999998754221 23456789
Q ss_pred HHhhhhcCceEEEEecceEEecCCHHHHHHHH
Q 009720 337 IPAAIMEHDVQAYIFRDYWEDIGTIKSFYEAN 368 (527)
Q Consensus 337 i~~li~~~~V~~~~~~g~w~dIgt~~d~~~An 368 (527)
++.+++++++.+|.++++|.||||++||.+|+
T Consensus 192 ~~~l~~~~~v~~~~~~~~~~dI~t~~dl~~a~ 223 (223)
T cd06915 192 LPALVKRGRLYGFEVDGYFIDIGIPEDYARAQ 223 (223)
T ss_pred HHHHHhcCcEEEEecCCeEEecCCHHHHHhhC
Confidence 99999888999999999999999999999883
No 44
>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars. Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.
Probab=100.00 E-value=3.9e-32 Score=262.93 Aligned_cols=217 Identities=30% Similarity=0.524 Sum_probs=181.5
Q ss_pred EEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCcccCCCeEE
Q 009720 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVE 176 (527)
Q Consensus 97 aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~~V~ 176 (527)
|||||||.|+||+|+|..+||||+|++|+ |||+|+++++.++|+++|+|++++..+++.+|+.+.+ .++ ..+.
T Consensus 1 aiIlaaG~g~R~~~~t~~~pK~ll~v~g~-pli~~~l~~l~~~g~~~i~vv~~~~~~~i~~~~~~~~-----~~~-~~i~ 73 (217)
T cd04181 1 AVILAAGKGTRLRPLTDTRPKPLLPIAGK-PILEYIIERLARAGIDEIILVVGYLGEQIEEYFGDGS-----KFG-VNIE 73 (217)
T ss_pred CEEecCCccccccccccCCCccccEECCe-eHHHHHHHHHHHCCCCEEEEEeccCHHHHHHHHcChh-----hcC-ceEE
Confidence 69999999999999999999999999999 9999999999999999999999998888888875221 122 1233
Q ss_pred EeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeecCCHHHHHHHHHHcCCcEEEEEEEcCCCCC
Q 009720 177 VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRA 256 (527)
Q Consensus 177 vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tv~~~~~~~~~~ 256 (527)
++.... ..|++++++.++.++. .++|++++||++++.++.++++.|.++++++++++.+.+ .+
T Consensus 74 ~~~~~~---------~~g~~~al~~~~~~~~------~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 136 (217)
T cd04181 74 YVVQEE---------PLGTAGAVRNAEDFLG------DDDFLVVNGDVLTDLDLSELLRFHREKGADATIAVKEVE--DP 136 (217)
T ss_pred EEeCCC---------CCccHHHHHHhhhhcC------CCCEEEEECCeecCcCHHHHHHHHHhcCCCEEEEEEEcC--CC
Confidence 333211 2599999999988772 479999999999999999999999999999999988776 36
Q ss_pred CCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCCCCCchhhhh
Q 009720 257 SDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEI 336 (527)
Q Consensus 257 ~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~~~~d~~~di 336 (527)
.+|+.+.+|++|+|.++.|||.... +..+++|+|+|++++|. +++.......++..++
T Consensus 137 ~~~~~v~~d~~~~v~~~~ek~~~~~---------------------~~~~~~Giy~~~~~~~~-~l~~~~~~~~~~~~~~ 194 (217)
T cd04181 137 SRYGVVELDDDGRVTRFVEKPTLPE---------------------SNLANAGIYIFEPEILD-YIPEILPRGEDELTDA 194 (217)
T ss_pred CcceEEEEcCCCcEEEEEECCCCCC---------------------CCEEEEEEEEECHHHHH-hhhhcCCcccccHHHH
Confidence 6899999998899999999987532 25789999999999884 5555433345677899
Q ss_pred HHhhhhcCceEEEEecceEEecC
Q 009720 337 IPAAIMEHDVQAYIFRDYWEDIG 359 (527)
Q Consensus 337 i~~li~~~~V~~~~~~g~w~dIg 359 (527)
++.++++.++++|.++|+|.|||
T Consensus 195 ~~~l~~~~~v~~~~~~g~w~dig 217 (217)
T cd04181 195 IPLLIEEGKVYGYPVDGYWLDIG 217 (217)
T ss_pred HHHHHhcCCEEEEEcCCEEecCC
Confidence 99999999999999999999986
No 45
>cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=100.00 E-value=1.3e-31 Score=260.58 Aligned_cols=219 Identities=25% Similarity=0.459 Sum_probs=176.8
Q ss_pred EEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCcccCCCeEE
Q 009720 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVE 176 (527)
Q Consensus 97 aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~~V~ 176 (527)
+||||||.|+||+|+|..+||+|+|++|+ |||+|++++|.++|+++|+|++++..+++.+|+.+ +..++. .+.
T Consensus 1 ~vIlaaG~g~R~~plt~~~pK~ll~~~g~-pli~~~l~~l~~~~~~~iivv~~~~~~~i~~~~~~-----~~~~~~-~i~ 73 (220)
T cd06426 1 VVIMAGGKGTRLRPLTENTPKPMLKVGGK-PILETIIDRFIAQGFRNFYISVNYLAEMIEDYFGD-----GSKFGV-NIS 73 (220)
T ss_pred CEEecCCCccccCcccCCCCCccCeECCc-chHHHHHHHHHHCCCcEEEEECccCHHHHHHHHCC-----ccccCc-cEE
Confidence 68999999999999999999999999999 99999999999999999999999988888777742 112321 133
Q ss_pred EeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeecCCHHHHHHHHHHcCCcEEEEEEEcCCCCC
Q 009720 177 VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRA 256 (527)
Q Consensus 177 vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tv~~~~~~~~~~ 256 (527)
++. +. .+.||+++++.+.... .++|++++||++++.++.++++.|++.++++++.+.+... .
T Consensus 74 ~~~--~~-------~~~g~~~~l~~~~~~~-------~~~~lv~~~D~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~ 135 (220)
T cd06426 74 YVR--ED-------KPLGTAGALSLLPEKP-------TDPFLVMNGDILTNLNYEHLLDFHKENNADATVCVREYEV--Q 135 (220)
T ss_pred EEE--CC-------CCCcchHHHHHHHhhC-------CCCEEEEcCCEeeccCHHHHHHHHHhcCCCEEEEEEEcCC--C
Confidence 322 21 1259999997665433 4789999999999999999999999988999988877543 3
Q ss_pred CCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCCCCCchhhhh
Q 009720 257 SDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEI 336 (527)
Q Consensus 257 ~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~~~~d~~~di 336 (527)
..||++..|+ ++|+++.|||... .++++|+|+|+++++..+ +. .......++
T Consensus 136 ~~~g~~~~d~-~~v~~~~ek~~~~-----------------------~~~~~Giy~~~~~~~~~i-~~---~~~~~l~~~ 187 (220)
T cd06426 136 VPYGVVETEG-GRITSIEEKPTHS-----------------------FLVNAGIYVLEPEVLDLI-PK---NEFFDMPDL 187 (220)
T ss_pred CcceEEEECC-CEEEEEEECCCCC-----------------------CeEEEEEEEEcHHHHhhc-CC---CCCcCHHHH
Confidence 5699999986 8999999997632 468999999999998643 21 111225688
Q ss_pred HHhhhhc-CceEEEEecceEEecCCHHHHHHHH
Q 009720 337 IPAAIME-HDVQAYIFRDYWEDIGTIKSFYEAN 368 (527)
Q Consensus 337 i~~li~~-~~V~~~~~~g~w~dIgt~~d~~~An 368 (527)
++.++++ .++.+|.++++|.||||++||.+||
T Consensus 188 ~~~~i~~~~~i~~~~~~~~w~~igt~~dl~~a~ 220 (220)
T cd06426 188 IEKLIKEGKKVGVFPIHEYWLDIGRPEDYEKAN 220 (220)
T ss_pred HHHHHHCCCcEEEEEeCCeEEeCCCHHHHHhhC
Confidence 9998877 5799999999999999999999986
No 46
>COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=4.4e-32 Score=263.78 Aligned_cols=250 Identities=22% Similarity=0.308 Sum_probs=208.3
Q ss_pred CCceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhh-ccCCccc
Q 009720 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-FGNGTNF 170 (527)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y-~~~~~~~ 170 (527)
++..+|||+|||.||||.|.|+..||-|+||.+| |+|+|+++.+..+||++|++||+.+...+.+|+...| +++...-
T Consensus 2 ~~irKAViPaAGlGTRfLPATKaiPKEMLPIvdK-P~IqYiVeEa~~aGIe~i~iVTgr~K~~IeDhFD~s~ELE~~L~~ 80 (291)
T COG1210 2 MKIRKAVIPAAGLGTRFLPATKAIPKEMLPIVDK-PLIQYIVEEAVAAGIEEILIVTGRGKRAIEDHFDTSYELENTLEK 80 (291)
T ss_pred CcccEEEEEccCcccccccccccCchhhccccCc-hhHHHHHHHHHHcCCCEEEEEecCCcchHHHhCcCcHHHHHHHHH
Confidence 4567999999999999999999999999999999 9999999999999999999999999999999987665 3321000
Q ss_pred -C-----------CCeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeecC---CHHHHHH
Q 009720 171 -G-----------DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRM---DYMDFIQ 235 (527)
Q Consensus 171 -~-----------~~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~---dl~~ll~ 235 (527)
+ ...+++.+..|.. ++|.+||+++|+.++. +++|.|+.+|.++.. .+.+|++
T Consensus 81 ~~K~~~L~~v~~i~~~~~i~~vRQ~e-------~~GLGhAVl~A~~~vg------~EpFaVlL~Ddl~~~~~~~l~qmi~ 147 (291)
T COG1210 81 RGKRELLEEVRSIPPLVTISFVRQKE-------PLGLGHAVLCAKPFVG------DEPFAVLLPDDLVDSEKPCLKQMIE 147 (291)
T ss_pred hCHHHHHHHHHhcccCceEEEEecCC-------CCcchhHHHhhhhhcC------CCceEEEeCCeeecCCchHHHHHHH
Confidence 0 1234555556643 4799999999999996 489999999999864 3799999
Q ss_pred HHHHcCCcEEEEEEEcCCCCCCCceEEE----ECCC-CceEEEEecCCccccccccccccccCCCccccccCCceeeeeE
Q 009720 236 SHVDRDADITISCAAVGESRASDYGLVK----IDNM-GRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGV 310 (527)
Q Consensus 236 ~h~~~~ad~tv~~~~~~~~~~~~~g~v~----~D~~-g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GI 310 (527)
.+.+.+. -++.+.+++.++.++||++. .+++ .+|+.+.|||...+. .|+++.+|-
T Consensus 148 ~ye~~g~-svi~v~ev~~e~v~kYGvi~~g~~~~~~~~~v~~~VEKP~~~~A-------------------PSnlai~GR 207 (291)
T COG1210 148 LYEETGG-SVIGVEEVPPEDVSKYGVIDPGEPVEKGVYKVKGMVEKPKPEEA-------------------PSNLAIVGR 207 (291)
T ss_pred HHHHhCC-cEEEEEECCHHHCcccceEecCccccCCeEEEEEEEECCCCCCC-------------------Ccceeeeee
Confidence 9988887 46788888877789999998 4443 589999999976532 478999999
Q ss_pred EEEeHHHHHHHHHhhCCCCCc--hhhhhHHhhhhcCceEEEEecceEEecCCHHHHHHHHHHhhccCC
Q 009720 311 YVFKKDVLFKLLRWRYPTSND--FGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKESP 376 (527)
Q Consensus 311 Yif~~~iL~~ll~~~~~~~~d--~~~dii~~li~~~~V~~~~~~g~w~dIgt~~d~~~An~~ll~~~~ 376 (527)
|+|++++|. +|++..+.... ..+|.|..++++..|++|.++|..+|+|++..|.+|+.++..+.+
T Consensus 208 Yil~p~IFd-~L~~~~~G~ggEiQLTDai~~L~~~~~v~a~~~~GkryD~G~k~Gyi~a~v~~~l~~~ 274 (291)
T COG1210 208 YVLTPEIFD-ILEETKPGAGGEIQLTDAIKKLLKKEPVLAYVFEGKRYDCGSKLGYIKANVEFALRRP 274 (291)
T ss_pred eecCHHHHH-HHhhCCCCCCCEeeHHHHHHHHHhhCcEEEEEecccEEccCCcccHHHHHHHHHhhCh
Confidence 999999997 67776664332 457899999999999999999999999999999999999987653
No 47
>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline. This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP
Probab=99.97 E-value=1.1e-29 Score=249.05 Aligned_cols=222 Identities=17% Similarity=0.243 Sum_probs=172.8
Q ss_pred EEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCcccCCCeEE
Q 009720 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVE 176 (527)
Q Consensus 97 aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~~V~ 176 (527)
|||||||.|+||+|+|..+||||+|++|+ |||+|+++++.++|+++|+|+++++.+++.+|+.+ + .+ +.
T Consensus 1 aiIlAaG~g~Rl~~lt~~~pK~l~~~~g~-~li~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~~~-~------~~---~~ 69 (229)
T cd02523 1 AIILAAGRGSRLRPLTEDRPKCLLEINGK-PLLERQIETLKEAGIDDIVIVTGYKKEQIEELLKK-Y------PN---IK 69 (229)
T ss_pred CEEEeccCccccchhhCCCCceeeeECCE-EHHHHHHHHHHHCCCceEEEEeccCHHHHHHHHhc-c------CC---eE
Confidence 69999999999999999999999999999 99999999999999999999999998888888742 1 12 55
Q ss_pred EeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeecCCHHHHHHHHHHcCCcEEEEEEEcCCCCC
Q 009720 177 VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRA 256 (527)
Q Consensus 177 vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tv~~~~~~~~~~ 256 (527)
++...+.. ..|++++++.++.++. ++|++++||++++. ++++.|.+.++++++++.+..+...
T Consensus 70 ~~~~~~~~-------~~g~~~s~~~~~~~~~-------~~~lv~~~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (229)
T cd02523 70 FVYNPDYA-------ETNNIYSLYLARDFLD-------EDFLLLEGDVVFDP---SILERLLSSPADNAILVDKKTKEWE 132 (229)
T ss_pred EEeCcchh-------hhCcHHHHHHHHHHcC-------CCEEEEeCCEecCH---HHHHHHHcCCCCCeEEEccCccccc
Confidence 55433211 2599999999988773 68999999999865 5677788888899998887544334
Q ss_pred CCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHh---hCC--CCCc
Q 009720 257 SDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRW---RYP--TSND 331 (527)
Q Consensus 257 ~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~---~~~--~~~d 331 (527)
..++.+..| .+++..+.|||.... ....+++|+|+|++++|..+.+. ..+ ...+
T Consensus 133 ~~~~~~~~~-~~~v~~~~~k~~~~~--------------------~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~ 191 (229)
T cd02523 133 DEYVKDLDD-AGVLLGIISKAKNLE--------------------EIQGEYVGISKFSPEDADRLAEALEELIEAGRVNL 191 (229)
T ss_pred ccceeeecC-ccceEeecccCCCcc--------------------hhceEEEeEEEECHHHHHHHHHHHHHHHhcccccc
Confidence 456655444 378999999886432 13578999999999997655332 211 2345
Q ss_pred hhhhhHHhhhhc--CceEEEEecceEEecCCHHHHHHHH
Q 009720 332 FGSEIIPAAIME--HDVQAYIFRDYWEDIGTIKSFYEAN 368 (527)
Q Consensus 332 ~~~dii~~li~~--~~V~~~~~~g~w~dIgt~~d~~~An 368 (527)
+..++++.++++ .+++.+.. ++|.||||++||.+|+
T Consensus 192 ~~~d~i~~l~~~~~~~v~~~~~-~~w~dI~~~ed~~~a~ 229 (229)
T cd02523 192 YYEDALQRLISEEGVKVKDISD-GFWYEIDDLEDLERAE 229 (229)
T ss_pred cHHHHHHHHHhhcCeeEEEcCC-CCEEEeCCHHHHHhhC
Confidence 678999999884 45555555 8999999999999874
No 48
>cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch. ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2.
Probab=99.97 E-value=2.4e-29 Score=242.00 Aligned_cols=198 Identities=47% Similarity=0.782 Sum_probs=160.6
Q ss_pred EEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhh-ccCCcccCCCeE
Q 009720 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-FGNGTNFGDGFV 175 (527)
Q Consensus 97 aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y-~~~~~~~~~~~V 175 (527)
|||||||.||||+|+|+.+||||+||+|+||||+|+++++.++|+++|+|++++..+++.+|+.+.. ++. +.....+
T Consensus 1 avILAaG~gtRl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~iivv~~~~~~~i~~~~~~~~~~~~--~~~~~~~ 78 (200)
T cd02508 1 AIILAGGEGTRLSPLTKKRAKPAVPFGGRYRLIDFPLSNMVNSGIRNVGVLTQYKSRSLNDHLGSGKEWDL--DRKNGGL 78 (200)
T ss_pred CEEeCCCCCcccchhhcCCcceeeEECCeeeeHHHHHHHHHHCCCCEEEEEeCCChHHHHHHHhCCCcccC--CCCCCCE
Confidence 5999999999999999999999999999878999999999999999999999999999988885321 211 1111225
Q ss_pred EEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeecCCHHHHHHHHHHcCCcEEEEEEEcCCCC
Q 009720 176 EVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESR 255 (527)
Q Consensus 176 ~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tv~~~~~~~~~ 255 (527)
+++...+.. .+.|..||+++|+.++.++++ ...++|++++||++++.++.++++.|+++++++|+++.
T Consensus 79 ~~~~~~~~~---~~~~~~Gta~al~~a~~~i~~---~~~~~~lv~~gD~v~~~~~~~~l~~~~~~~~~~t~~~~------ 146 (200)
T cd02508 79 FILPPQQRK---GGDWYRGTADAIYQNLDYIER---SDPEYVLILSGDHIYNMDYREMLDFHIESGADITVVYK------ 146 (200)
T ss_pred EEeCcccCC---CCCcccCcHHHHHHHHHHHHh---CCCCEEEEecCCEEEecCHHHHHHHHHHcCCCEEEEEh------
Confidence 565543311 124568999999999998852 12478999999999999999999999998888887764
Q ss_pred CCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCC-CCCchhh
Q 009720 256 ASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP-TSNDFGS 334 (527)
Q Consensus 256 ~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~-~~~d~~~ 334 (527)
+++|+|+|++++|..+++...+ ...++.+
T Consensus 147 --------------------------------------------------~~~g~yi~~~~~~~~~l~~~~~~~~~~~~~ 176 (200)
T cd02508 147 --------------------------------------------------ASMGIYIFSKDLLIELLEEDAADGSHDFGK 176 (200)
T ss_pred --------------------------------------------------hcCEEEEEEHHHHHHHHHHHhccCcchhHH
Confidence 2689999999999777765432 3446778
Q ss_pred hhHHhhhhcCceEEEEecceEEec
Q 009720 335 EIIPAAIMEHDVQAYIFRDYWEDI 358 (527)
Q Consensus 335 dii~~li~~~~V~~~~~~g~w~dI 358 (527)
|+++.++++.++++|.++|||.||
T Consensus 177 d~i~~l~~~~~v~~~~~~g~w~di 200 (200)
T cd02508 177 DIIPAMLKKLKIYAYEFNGYWADI 200 (200)
T ss_pred HHHHHHhccCcEEEEEeCCeEecC
Confidence 999999999999999999999986
No 49
>cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule. GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=99.97 E-value=3.4e-29 Score=245.71 Aligned_cols=222 Identities=18% Similarity=0.247 Sum_probs=169.0
Q ss_pred EEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCcccCCCeEE
Q 009720 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVE 176 (527)
Q Consensus 97 aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~~V~ 176 (527)
.||||||+||||+|+|..+||||+||+|+ |||+|+++++.++|+++|+|++++.. ....|+.+.+-... . .+.
T Consensus 1 ~iIlAaG~g~Rl~plt~~~pK~ll~i~g~-pli~~~l~~l~~~g~~~ivvv~~~~~-~~~~~~~~~~~~~~---~--~~~ 73 (231)
T cd04183 1 IIIPMAGLGSRFKKAGYTYPKPLIEVDGK-PMIEWVIESLAKIFDSRFIFICRDEH-NTKFHLDESLKLLA---P--NAT 73 (231)
T ss_pred CEEECCcCCccccccCCCCCceeeEECCE-EHHHHHHHhhhccCCceEEEEEChHH-hhhhhHHHHHHHhC---C--CCE
Confidence 48999999999999999999999999999 99999999999999999999997432 12233322211110 1 133
Q ss_pred EeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeecCCHHHHHHHHHHcCCcEEEEEEEcCCCCC
Q 009720 177 VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRA 256 (527)
Q Consensus 177 vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tv~~~~~~~~~~ 256 (527)
++..... ..||+++++.++.++. ..++|++++||++++.++.++++.|.+.+.+.++++.+.+ .
T Consensus 74 i~~~~~~--------~~g~~~~l~~a~~~l~-----~~~~~lv~~~D~i~~~~~~~~~~~~~~~~~~~~i~~~~~~---~ 137 (231)
T cd04183 74 VVELDGE--------TLGAACTVLLAADLID-----NDDPLLIFNCDQIVESDLLAFLAAFRERDLDGGVLTFFSS---H 137 (231)
T ss_pred EEEeCCC--------CCcHHHHHHHHHhhcC-----CCCCEEEEecceeeccCHHHHHHHhhccCCceEEEEEeCC---C
Confidence 3221111 2599999999998774 2378999999999999999999999887777777766552 3
Q ss_pred CCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHH-HHHHHHHhhC-----CCCC
Q 009720 257 SDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKD-VLFKLLRWRY-----PTSN 330 (527)
Q Consensus 257 ~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~-iL~~ll~~~~-----~~~~ 330 (527)
.+|+.+.+|++|+|+.+.||+.. +..+++|+|+|+++ .|.++++... +...
T Consensus 138 ~~~~~v~~d~~~~v~~~~ek~~~-----------------------~~~~~~Giy~~~~~~~~~~~l~~~~~~~~~~~~~ 194 (231)
T cd04183 138 PRWSYVKLDENGRVIETAEKEPI-----------------------SDLATAGLYYFKSGSLFVEAAKKMIRKDDSVNGE 194 (231)
T ss_pred CCeEEEEECCCCCEEEeEEcCCC-----------------------CCccEeEEEEECcHHHHHHHHHHHHhhcccccCc
Confidence 47999999999999999988532 24689999999997 6655555421 1122
Q ss_pred chhhhhHHhhhhc-CceEEEEe-cceEEecCCHHHH
Q 009720 331 DFGSEIIPAAIME-HDVQAYIF-RDYWEDIGTIKSF 364 (527)
Q Consensus 331 d~~~dii~~li~~-~~V~~~~~-~g~w~dIgt~~d~ 364 (527)
.+..++++.++++ .+|++|.+ .++|.||||++||
T Consensus 195 ~~~~d~i~~~~~~g~~v~~~~~~~~~w~di~t~~dl 230 (231)
T cd04183 195 FYISPLYNELILDGKKVGIYLIDKDDYHSFGTPEDL 230 (231)
T ss_pred EEEhHHHHHHHHcCCEEEEEEeccccEEEcCChHhc
Confidence 3457899999977 57999999 6899999999987
No 50
>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=99.97 E-value=1.1e-29 Score=247.65 Aligned_cols=204 Identities=17% Similarity=0.285 Sum_probs=155.8
Q ss_pred eEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhh-ccCCcccCCC
Q 009720 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-FGNGTNFGDG 173 (527)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y-~~~~~~~~~~ 173 (527)
++|||||||.|+||+|||..+||||+||+|+ |||+|+|++|.++|+++|+|+++++.+++.+|+.+.+ ++. .+...
T Consensus 1 ~~aiIla~G~g~Rl~plt~~~pK~llpi~g~-piI~~~l~~l~~~Gi~~I~iv~~~~~~~i~~~l~~~~~~~~--~~~~~ 77 (217)
T cd04197 1 LQAVVLADSFNRRFRPLTKEKPRCLLPLANV-PLIDYTLEFLALNGVEEVFVFCCSHSDQIKEYIEKSKWSKP--KSSLM 77 (217)
T ss_pred CeEEEEcCCCcccccccccCCCceeeEECCE-ehHHHHHHHHHHCCCCeEEEEeCCCHHHHHHHHhhcccccc--ccCcc
Confidence 4799999999999999999999999999999 9999999999999999999999999999999996433 221 11011
Q ss_pred eEEEeccccCCCCCCCCcccChHHHHHHHH--HHHHhhhcCCCCeEEEEcCceeecCCHHHHHHHHHH-----cCCcEEE
Q 009720 174 FVEVLAATQTPGESGKNWFQGTADAVRQFT--WVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVD-----RDADITI 246 (527)
Q Consensus 174 ~V~vl~~~q~~~~~~~~~~~Gta~al~~a~--~~l~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~-----~~ad~tv 246 (527)
.++++...+ ..|++++++... .++ .++|++++||++++.|+.++++.|++ +++++|+
T Consensus 78 ~i~~~~~~~---------~~~~~~al~~~~~~~~~-------~~~flv~~gD~i~~~dl~~~l~~h~~~~~~~~~a~~t~ 141 (217)
T cd04197 78 IVIIIMSED---------CRSLGDALRDLDAKGLI-------RGDFILVSGDVVSNIDLKEILEEHKERRKKDKNAIMTM 141 (217)
T ss_pred eEEEEeCCC---------cCccchHHHHHhhcccc-------CCCEEEEeCCeeeccCHHHHHHHHHHhhccccCceEEE
Confidence 244433221 258899987642 222 36899999999999999999999987 4889999
Q ss_pred EEEEcCCCCC----CCceEEEECCC-CceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHH
Q 009720 247 SCAAVGESRA----SDYGLVKIDNM-GRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVL 318 (527)
Q Consensus 247 ~~~~~~~~~~----~~~g~v~~D~~-g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL 318 (527)
++.++++++. .+++++.+|++ ++|+.|.|||..+......++..++.-.|.. ..++++.++|+|+|++++|
T Consensus 142 ~~~~~~~~~~~~~~~~~~vv~~d~~~~~v~~~~ekp~~~~~~~~~~~~~~~~~~~~~-~i~~~l~d~~iYi~~~~vl 217 (217)
T cd04197 142 VLKEASPPHRTRRTGEEFVIAVDPKTSRLLHYEELPGSKYRSITDLPSELLGSNSEV-EIRHDLLDCHIDICSPDVL 217 (217)
T ss_pred EEEeCCCccccccCCCceEEEEcCCCCcEEEEecccCCCCccccccCHHHhcCCCcE-EEECCceecCEEEeCCCCC
Confidence 9988876542 24678888866 8999999999876533333443333333322 2357899999999999864
No 51
>cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose. GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes.
Probab=99.95 E-value=4.7e-27 Score=237.23 Aligned_cols=233 Identities=18% Similarity=0.288 Sum_probs=167.6
Q ss_pred eEEEEEeCCCCCccccCcc-CCCccceeeCC-cchhHHHHHHHHHHc-CCCEEEEEeccCchh-HHHHHHHhhccCCccc
Q 009720 95 VAAIILGGGAGTKLFPLTL-RAATPAVPVAG-CYRLIDIPMSNCINS-GINKIFVLTQFNSAS-LNRHIARTYFGNGTNF 170 (527)
Q Consensus 95 m~aVILAaG~GtRL~PLT~-~~PKpLlpIgG-k~pLId~~l~~l~~~-Gi~~I~Iv~~~~~~~-i~~hl~~~y~~~~~~~ 170 (527)
|++||||||.||||+|||. .+||+|+|++| + |||+++++++.+. ++++|+|++++...+ +.+++. ..
T Consensus 1 m~~vILAgG~GtRl~PlS~~~~PK~ll~l~g~~-~li~~~l~~l~~~~~~~~i~vvt~~~~~~~v~~~l~-~~------- 71 (274)
T cd02509 1 IYPVILAGGSGTRLWPLSRESYPKQFLKLFGDK-SLLQQTLDRLKGLVPPDRILVVTNEEYRFLVREQLP-EG------- 71 (274)
T ss_pred CEEEEEcccccccCCcCCCCCCCceEeEcCCCC-cHHHHHHHHHhcCCCCCcEEEEechHHHHHHHHHHh-hc-------
Confidence 6899999999999999996 79999999999 6 9999999999998 599999999975543 333332 10
Q ss_pred CCCeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeec--CCHHHHHHHHHH---cCCcEE
Q 009720 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYR--MDYMDFIQSHVD---RDADIT 245 (527)
Q Consensus 171 ~~~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~--~dl~~ll~~h~~---~~ad~t 245 (527)
...+.++.... .+||++++..+..++.. ....+.++|++||+++. .+|.++++.|.+ .++.+|
T Consensus 72 -~~~~~ii~ep~---------~~gTa~ai~~a~~~~~~--~~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~~~~~~~vt 139 (274)
T cd02509 72 -LPEENIILEPE---------GRNTAPAIALAALYLAK--RDPDAVLLVLPSDHLIEDVEAFLKAVKKAVEAAEEGYLVT 139 (274)
T ss_pred -CCCceEEECCC---------CCCcHHHHHHHHHHHHh--cCCCCeEEEecchhcccCHHHHHHHHHHHHHHHHcCCEEE
Confidence 01244554322 25999999999888752 12346899999999886 557777776543 567788
Q ss_pred EEEEEcCCCCCCCceEEEECCCC-----ceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHH
Q 009720 246 ISCAAVGESRASDYGLVKIDNMG-----RIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFK 320 (527)
Q Consensus 246 v~~~~~~~~~~~~~g~v~~D~~g-----~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ 320 (527)
+.+.+.+. .+.||+++.|++. +|.+|.|||.....+.+ .....+++|+|+|+|+++.|.+
T Consensus 140 ~gi~p~~~--~t~yGyI~~~~~~~~~~~~V~~f~EKP~~~~a~~~-------------~~~g~~~wNsGiyi~~~~~l~~ 204 (274)
T cd02509 140 FGIKPTRP--ETGYGYIEAGEKLGGGVYRVKRFVEKPDLETAKEY-------------LESGNYLWNSGIFLFRAKTFLE 204 (274)
T ss_pred EEeeecCC--CCCeEEEEeCCcCCCCceEEeEEEECcChHHHHHH-------------hhcCCeEEECceeeeeHHHHHH
Confidence 88777643 4689999998663 89999999976432211 0113468999999999998887
Q ss_pred HHHhhCCCCC----------------chhhhhHHh--------h-hhc-CceEEEEecceEEecCCHHH
Q 009720 321 LLRWRYPTSN----------------DFGSEIIPA--------A-IME-HDVQAYIFRDYWEDIGTIKS 363 (527)
Q Consensus 321 ll~~~~~~~~----------------d~~~dii~~--------l-i~~-~~V~~~~~~g~w~dIgt~~d 363 (527)
.+++..|... .+..+.++. + +++ .++.+++.+..|.|+|++.+
T Consensus 205 ~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sidyavme~~~~~~v~~~~~~W~D~G~w~~ 273 (274)
T cd02509 205 ELKKHAPDIYEALEKALAAAGTDDFLRLLEEAFAKIPSISIDYAVMEKTKKVAVVPADFGWSDLGSWDA 273 (274)
T ss_pred HHHHHCHHHHHHHHHHHHhcCCchhhhhhHHHHhhCCCcccchHhheeCCCcEEEecCCCcCcccCccc
Confidence 7776554210 111222332 1 222 67888888888999999875
No 52
>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU. The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.
Probab=99.95 E-value=6.3e-26 Score=221.78 Aligned_cols=221 Identities=22% Similarity=0.335 Sum_probs=173.0
Q ss_pred EEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCcccCCCeEE
Q 009720 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVE 176 (527)
Q Consensus 97 aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~~V~ 176 (527)
|||||||.|+||+| .+||+|+|++|+ |||+|+|+++.++|+++|+|+++++.+++.+++.+ ++ ++
T Consensus 1 aiIlaaG~g~R~~~---~~pK~l~~v~gk-pli~~~i~~l~~~~i~~i~iv~~~~~~~i~~~~~~--------~~---~~ 65 (229)
T cd02540 1 AVILAAGKGTRMKS---DLPKVLHPLAGK-PMLEHVLDAARALGPDRIVVVVGHGAEQVKKALAN--------PN---VE 65 (229)
T ss_pred CEEEeCCCCccCCC---CCChhcceeCCc-cHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhCC--------CC---cE
Confidence 69999999999986 689999999999 99999999999999999999999987777666631 12 44
Q ss_pred EeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCcee--ecCCHHHHHHHHHHcCCcEEEEEEEcCCC
Q 009720 177 VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHL--YRMDYMDFIQSHVDRDADITISCAAVGES 254 (527)
Q Consensus 177 vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l--~~~dl~~ll~~h~~~~ad~tv~~~~~~~~ 254 (527)
++.... ..|++++++.++++++. ..+.|+++.||+. ...++.++++.|.+.++++++.+.+..+
T Consensus 66 ~~~~~~---------~~g~~~ai~~a~~~~~~----~~~~vli~~~D~p~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~- 131 (229)
T cd02540 66 FVLQEE---------QLGTGHAVKQALPALKD----FEGDVLVLYGDVPLITPETLQRLLEAHREAGADVTVLTAELED- 131 (229)
T ss_pred EEECCC---------CCCCHHHHHHHHHhhcc----CCCeEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEEEcCC-
Confidence 443221 25999999999988852 2478999999983 3567899999998878888888777664
Q ss_pred CCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCCC---CCc
Q 009720 255 RASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT---SND 331 (527)
Q Consensus 255 ~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~~---~~d 331 (527)
+..|+.+..|++|+|..+.|||..... . ...+.+++|+|+|+++.|..+++..... ...
T Consensus 132 -p~~~~~~~~~~~~~v~~~~ek~~~~~~---------------~--~~~~~~~~giy~~~~~~~~~~l~~~~~~~~~~~~ 193 (229)
T cd02540 132 -PTGYGRIIRDGNGKVLRIVEEKDATEE---------------E--KAIREVNAGIYAFDAEFLFEALPKLTNNNAQGEY 193 (229)
T ss_pred -CCCccEEEEcCCCCEEEEEECCCCChH---------------H--HhhceEEeEEEEEEHHHHHHHHHHcccccCCCcE
Confidence 567998888888999999998753210 0 0125789999999998877777664332 345
Q ss_pred hhhhhHHhhhhc-CceEEEEecce--EEecCCHHHH
Q 009720 332 FGSEIIPAAIME-HDVQAYIFRDY--WEDIGTIKSF 364 (527)
Q Consensus 332 ~~~dii~~li~~-~~V~~~~~~g~--w~dIgt~~d~ 364 (527)
+.+++++.++++ .+|++|.++|| |+.|+|+.++
T Consensus 194 ~~~d~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~ 229 (229)
T cd02540 194 YLTDIIALAVADGLKVAAVLADDEEEVLGVNDRVQL 229 (229)
T ss_pred EHHHHHHHHHHCCCEEEEEEcCCcceEecCCChHhC
Confidence 678999999976 67999999977 6788888764
No 53
>cd02507 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity. N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=99.94 E-value=4.4e-26 Score=222.21 Aligned_cols=204 Identities=19% Similarity=0.310 Sum_probs=157.9
Q ss_pred eEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCcccCCCe
Q 009720 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (527)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~~ 174 (527)
++|||||||.|+||+|+|...||+|+|++|+ |||+|+++++.++|+++|+|++++..+++.+|+.+.++... ... ..
T Consensus 1 ~~avIlagg~g~rl~plt~~~pK~llpv~g~-pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~~~~~~~~~-~~~-~~ 77 (216)
T cd02507 1 FQAVVLADGFGSRFLPLTSDIPKALLPVANV-PLIDYTLEWLEKAGVEEVFVVCCEHSQAIIEHLLKSKWSSL-SSK-MI 77 (216)
T ss_pred CeEEEEeCCCccccCccccCCCcccceECCE-EHHHHHHHHHHHCCCCeEEEEeCCcHHHHHHHHHhcccccc-cCC-ce
Confidence 5899999999999999999999999999999 99999999999999999999999999999999875542100 111 12
Q ss_pred EEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeecCCHHHHHHH--HHHcCCcEEEEEEEcC
Q 009720 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQS--HVDRDADITISCAAVG 252 (527)
Q Consensus 175 V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~--h~~~~ad~tv~~~~~~ 252 (527)
+.++...+. ...||+++++++++++. ++|++++||++++.++.+++++ +...++++++.+....
T Consensus 78 v~~~~~~~~-------~~~Gta~~l~~~~~~i~-------~dflv~~gD~i~~~~l~~~l~~~r~~~~~~~~~~~~~~~~ 143 (216)
T cd02507 78 VDVITSDLC-------ESAGDALRLRDIRGLIR-------SDFLLLSCDLVSNIPLSELLEERRKKDKNAIATLTVLLAS 143 (216)
T ss_pred EEEEEccCC-------CCCccHHHHHHHhhcCC-------CCEEEEeCCEeecCCHHHHHHHHHhhCcccceEEEEEecc
Confidence 444433332 23699999999987774 6899999999999999999976 5556777777766544
Q ss_pred CCC-------CCCceEEEECCC---CceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHH
Q 009720 253 ESR-------ASDYGLVKIDNM---GRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVL 318 (527)
Q Consensus 253 ~~~-------~~~~g~v~~D~~---g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL 318 (527)
... +.+++++.+|++ .+++.+.|+|.... .+.+...++.-.|. ...++++.++|+|+|++++|
T Consensus 144 ~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~--~~~i~~~~l~~~~~-~~i~~dl~D~~iyi~s~~Vl 216 (216)
T cd02507 144 PPVSTEQSKKTEEEDVIAVDSKTQRLLLLHYEEDLDEDL--ELIIRKSLLSKHPN-VTIRTDLLDCHIYICSPDVL 216 (216)
T ss_pred CCCCccccccCCCCcEEEEcCCCCceEEEechhhcCcCc--ccccCHHHHhcCCC-EEEEcCcccccEEEecCcCC
Confidence 322 457899999988 58888888886543 22345555665553 34577899999999998864
No 54
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=99.92 E-value=8.5e-24 Score=228.30 Aligned_cols=239 Identities=17% Similarity=0.293 Sum_probs=164.4
Q ss_pred eEEEEEeCCCCCccccCccC-CCccceeeCC-cchhHHHHHHHHHHcCCCEEEEEeccCchh-HHHHHHHhhccCCcccC
Q 009720 95 VAAIILGGGAGTKLFPLTLR-AATPAVPVAG-CYRLIDIPMSNCINSGINKIFVLTQFNSAS-LNRHIARTYFGNGTNFG 171 (527)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~-~PKpLlpIgG-k~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~-i~~hl~~~y~~~~~~~~ 171 (527)
|.+||||||.||||+|||.. +||+|+|+.| + |||+|+++.+...++++++|+++..... +.+.+ +.+ +
T Consensus 1 ~~~vILAgG~GtRl~PlS~~~~PK~~l~l~g~~-~ll~~tl~~l~~~~~~~iviv~~~~~~~~~~~~l-~~~-------~ 71 (468)
T TIGR01479 1 IIPVILAGGSGTRLWPLSRELYPKQFLALVGDL-TMLQQTLKRLAGLPCSSPLVICNEEHRFIVAEQL-REI-------G 71 (468)
T ss_pred CEEEEecCcccccCCccccCCCCCceeEcCCCC-cHHHHHHHHHhcCCCcCcEEecCHHHHHHHHHHH-HHc-------C
Confidence 57999999999999999997 9999999977 7 9999999999999999999999754332 22233 221 1
Q ss_pred CCeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeecC--CHHHHHHHH---HHcCCcEEE
Q 009720 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRM--DYMDFIQSH---VDRDADITI 246 (527)
Q Consensus 172 ~~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~--dl~~ll~~h---~~~~ad~tv 246 (527)
.....++.... .+|||+++..+..++.... ...+.++|++||+++.. +|.++++++ .+.++.+|+
T Consensus 72 ~~~~~~i~Ep~---------~~gTa~ai~~aa~~~~~~~-~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~a~~~~lvtl 141 (468)
T TIGR01479 72 KLASNIILEPV---------GRNTAPAIALAALLAARRN-GEDPLLLVLAADHVITDEDAFQAAVKLAMPAAAEGKLVTF 141 (468)
T ss_pred CCcceEEeccc---------ccCchHHHHHHHHHHHHHH-CCCcEEEEecCceeecCHHHHHHHHHHHHHHHhcCCEEEE
Confidence 11123433222 2599999988776663200 12345999999988753 488888865 344555566
Q ss_pred EEEEcCCCCCCCceEEEECC------CCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHH
Q 009720 247 SCAAVGESRASDYGLVKIDN------MGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFK 320 (527)
Q Consensus 247 ~~~~~~~~~~~~~g~v~~D~------~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ 320 (527)
...+... .+.||++..|+ .++|.+|.|||.....+.. .....+++|+|+|+|+++.|..
T Consensus 142 gi~p~~p--~t~YGyI~~~~~~~~~~~~~V~~f~EKP~~~~a~~~-------------l~~g~~~wNsGif~~~~~~ll~ 206 (468)
T TIGR01479 142 GIVPTHP--ETGYGYIRRGEPLAGEDVYQVQRFVEKPDLATAQAY-------------LESGDYYWNSGMFLFRASRYLA 206 (468)
T ss_pred EecCCCC--CCCceEEEeCCccCCCCceEEeEEEECCChHHHHHH-------------HhcCCeEEEeeEEEEEHHHHHH
Confidence 5554433 46899999973 2689999999975432111 1112478999999999887776
Q ss_pred HHHhhCCCC-----------------CchhhhhHH---------hhhhc-CceEEEEecceEEecCCHHHHHHH
Q 009720 321 LLRWRYPTS-----------------NDFGSEIIP---------AAIME-HDVQAYIFRDYWEDIGTIKSFYEA 367 (527)
Q Consensus 321 ll~~~~~~~-----------------~d~~~dii~---------~li~~-~~V~~~~~~g~w~dIgt~~d~~~A 367 (527)
.+++..|.- ..+..++++ .++++ .++.+.+.+..|.|+|+++++.+.
T Consensus 207 ~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iSiDyavmEk~~~v~vv~~~~~W~DvGsw~~l~~~ 280 (468)
T TIGR01479 207 ELKKHAPDIYEACEAAVEASEPDLDFIRLDKEAFEQCPSESIDYAVMEKTADAVVVPMDAGWSDVGSWSALWEI 280 (468)
T ss_pred HHHHHCHHHHHHHHHHHHhccCCcccceeCHHHHhhCcCCCeeeeeeEcCCcEEEEeCCCCccccCCHHHHHHh
Confidence 666544320 011123444 22333 578888888889999999999986
No 55
>cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=99.92 E-value=2e-24 Score=210.19 Aligned_cols=201 Identities=21% Similarity=0.308 Sum_probs=147.8
Q ss_pred eEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCc-hhHHHHHHHhhccCCcccCCC
Q 009720 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNS-ASLNRHIARTYFGNGTNFGDG 173 (527)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~-~~i~~hl~~~y~~~~~~~~~~ 173 (527)
|+|||||||.|+||+|+|...||||+|++|+ |||+|++++|.++|+++|+|++++.. +.+.+++.+..+... ...
T Consensus 1 ~~aVILAgG~g~R~~plt~~~pK~Llpv~g~-pli~~~l~~l~~~g~~~iivv~~~~~~~~i~~~l~~~~~~~~---~~~ 76 (214)
T cd04198 1 FQAVILAGGGGSRLYPLTDNIPKALLPVANK-PMIWYPLDWLEKAGFEDVIVVVPEEEQAEISTYLRSFPLNLK---QKL 76 (214)
T ss_pred CEEEEEeCCCCCcCCccccCCCcccCEECCe-eHHHHHHHHHHHCCCCeEEEEECHHHHHHHHHHHHhcccccC---cce
Confidence 5899999999999999999999999999999 99999999999999999999999755 346555532111111 011
Q ss_pred eEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeecCCHHHHHHHHHHcCCcEEEEEEEcCC
Q 009720 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGE 253 (527)
Q Consensus 174 ~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tv~~~~~~~ 253 (527)
.+.+.... ...||+++|+.+...+. ++|++++||++++.++.++++.|++.++++|+++.+...
T Consensus 77 ~~~~~~~~---------~~~gt~~al~~~~~~i~-------~d~lv~~~D~i~~~~l~~~l~~h~~~~~~~t~~~~~~~~ 140 (214)
T cd04198 77 DEVTIVLD---------EDMGTADSLRHIRKKIK-------KDFLVLSCDLITDLPLIELVDLHRSHDASLTVLLYPPPV 140 (214)
T ss_pred eEEEecCC---------CCcChHHHHHHHHhhcC-------CCEEEEeCccccccCHHHHHHHHhccCCcEEEEEeccCC
Confidence 12222111 13699999999987663 689999999999999999999999999999999887542
Q ss_pred C----------C-CCCceEEEECCC-CceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHH
Q 009720 254 S----------R-ASDYGLVKIDNM-GRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVL 318 (527)
Q Consensus 254 ~----------~-~~~~g~v~~D~~-g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL 318 (527)
+ + ...+.++.+|++ +++..+...... .+...++..++.-.|+ ...+.++.++++|+|++++|
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~ll~~~~~~~~--~~~~~~~~~~l~~~~~-~~i~~~l~D~hiyi~~~~v~ 214 (214)
T cd04198 141 SSEQKGGKGKSKKADERDVIGLDEKTQRLLFITSEEDL--DEDLELRKSLLKRHPR-VTITTKLLDAHVYIFKRWVL 214 (214)
T ss_pred cccccCCcccccCCCCCceEEEcCCCCEEEEECCHHHh--hhhhhHHHHHHHhCCC-EEEEcCcccceEEEEEeeeC
Confidence 1 1 234677777754 678877653221 1223345555555553 34467899999999998764
No 56
>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=99.91 E-value=1.1e-22 Score=201.54 Aligned_cols=234 Identities=17% Similarity=0.198 Sum_probs=160.6
Q ss_pred ceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCcccCCC
Q 009720 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (527)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~ 173 (527)
++.+||||||.|+||. +|+|+|++|+ |||+|+++.+.++|+++|+|++++ +.+.+++. . ++
T Consensus 2 ~~~~iIlA~g~S~R~~------~K~Ll~i~Gk-pll~~~l~~l~~~~i~~ivvv~~~--~~i~~~~~-~-------~~-- 62 (245)
T PRK05450 2 KFLIIIPARYASTRLP------GKPLADIGGK-PMIVRVYERASKAGADRVVVATDD--ERIADAVE-A-------FG-- 62 (245)
T ss_pred ceEEEEecCCCCCCCC------CCcccccCCc-CHHHHHHHHHHhcCCCeEEEECCc--HHHHHHHH-H-------cC--
Confidence 3679999999999993 6999999999 999999999999999999998864 55655553 1 22
Q ss_pred eEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-ee-cCCHHHHHHHHHHcCCcEEEEEEEc
Q 009720 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LY-RMDYMDFIQSHVDRDADITISCAAV 251 (527)
Q Consensus 174 ~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~-l~-~~dl~~ll~~h~~~~ad~tv~~~~~ 251 (527)
+.++...+. ++.|+++... +...++ ....+.+++++||+ +. ...+.++++.|.+.++++++++.+.
T Consensus 63 -~~v~~~~~~-------~~~gt~~~~~-~~~~~~---~~~~~~vlv~~~D~Pli~~~~l~~li~~~~~~~~~~~~~~~~~ 130 (245)
T PRK05450 63 -GEVVMTSPD-------HPSGTDRIAE-AAAKLG---LADDDIVVNVQGDEPLIPPEIIDQVAEPLANPEADMATLAVPI 130 (245)
T ss_pred -CEEEECCCc-------CCCchHHHHH-HHHhcC---CCCCCEEEEecCCCCCCCHHHHHHHHHHHhcCCCCeEeeeeec
Confidence 233332221 2347766443 332331 11246799999999 55 4568999999887777777777766
Q ss_pred CC----CCCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCC
Q 009720 252 GE----SRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP 327 (527)
Q Consensus 252 ~~----~~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~ 327 (527)
.+ ..++.++++ +|++|+|+.|.|||....... .+.. ...+.+.++|+|+|++++|..+.+. .+
T Consensus 131 ~~~~~~~~~~~~~v~-~d~~g~v~~~~e~~~~~~~~~----------~~~~-~~~~~~~~~Giy~~~~~~l~~~~~~-~~ 197 (245)
T PRK05450 131 HDAEEAFNPNVVKVV-LDADGRALYFSRAPIPYGRDA----------FADS-APTPVYRHIGIYAYRRGFLRRFVSL-PP 197 (245)
T ss_pred CCHHHhcCcCCCEEE-eCCCCcEEEecCCCCCCCCCc----------cccc-cCccccEEEEEEecCHHHHHHHHhC-CC
Confidence 32 234567765 889999999999985331100 0000 0125789999999999999866542 22
Q ss_pred CCCchh--hhhHHhhhhcCceEEEEecc-eEEecCCHHHHHHHHHHh
Q 009720 328 TSNDFG--SEIIPAAIMEHDVQAYIFRD-YWEDIGTIKSFYEANMAL 371 (527)
Q Consensus 328 ~~~d~~--~dii~~li~~~~V~~~~~~g-~w~dIgt~~d~~~An~~l 371 (527)
...+.. .++++.+-++.+|+++.+++ +|.|||||+||.+|+..+
T Consensus 198 ~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~w~~i~~~~dl~~a~~~~ 244 (245)
T PRK05450 198 SPLEKIESLEQLRALENGYRIHVVVVEEAPSIGVDTPEDLERVRALL 244 (245)
T ss_pred CccccchhHHHHHHHHCCCceEEEEeCCCCCCCcCCHHHHHHHHHHh
Confidence 211111 12233333447899999996 899999999999999765
No 57
>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide. CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.
Probab=99.90 E-value=1.6e-22 Score=199.51 Aligned_cols=226 Identities=17% Similarity=0.264 Sum_probs=157.5
Q ss_pred eEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHc-CCCEEEEEeccCchhHHHHHHHhhccCCcccCCC
Q 009720 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINS-GINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (527)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~-Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~ 173 (527)
+.+||||||.|+||. ||+|+|++|+ |||+|+++++.++ |+++|+|++++ +.+.+++. . ++
T Consensus 2 ~~~iIlA~g~s~R~~------~K~l~~i~gk-pll~~~l~~l~~~~~i~~ivvv~~~--~~i~~~~~-~-------~~-- 62 (239)
T cd02517 2 VIVVIPARYASSRLP------GKPLADIAGK-PMIQHVYERAKKAKGLDEVVVATDD--ERIADAVE-S-------FG-- 62 (239)
T ss_pred EEEEEecCCCCCCCC------CCCCcccCCc-CHHHHHHHHHHhCCCCCEEEEECCc--HHHHHHHH-H-------cC--
Confidence 679999999999994 6999999999 9999999999998 99999999864 55655553 1 12
Q ss_pred eEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-ee-cCCHHHHHHHHHHc-CCcEEEEEEE
Q 009720 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LY-RMDYMDFIQSHVDR-DADITISCAA 250 (527)
Q Consensus 174 ~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~-l~-~~dl~~ll~~h~~~-~ad~tv~~~~ 250 (527)
++++...+. +..||++ +..++..+. ...+.||+++||+ ++ ..++..+++.|.+. +.++++++.+
T Consensus 63 -~~~~~~~~~-------~~~gt~~-~~~~~~~~~----~~~d~vlv~~gD~Pli~~~~l~~l~~~~~~~~~~~~~~~~~~ 129 (239)
T cd02517 63 -GKVVMTSPD-------HPSGTDR-IAEVAEKLD----ADDDIVVNVQGDEPLIPPEMIDQVVAALKDDPGVDMATLATP 129 (239)
T ss_pred -CEEEEcCcc-------cCchhHH-HHHHHHhcC----CCCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCCEEEEEEE
Confidence 334332221 1247875 555554443 1236799999997 44 56789999988776 7888888888
Q ss_pred cCCCC----CCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhC
Q 009720 251 VGESR----ASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRY 326 (527)
Q Consensus 251 ~~~~~----~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~ 326 (527)
++++. ...|+ |..|++|+|+.|.+||...... |.. ..+.++++|+|+|++++|..+.+. .
T Consensus 130 ~~~~~~~~~~~~~~-v~~~~~~~v~~~~~~~~~~~~~------------~~~--~~~~~~~~Giy~~~~~~~~~~~~~-~ 193 (239)
T cd02517 130 ISDEEELFNPNVVK-VVLDKDGYALYFSRSPIPYPRD------------SSE--DFPYYKHIGIYAYRRDFLLRFAAL-P 193 (239)
T ss_pred cCCHHHccCCCCCE-EEECCCCCEEEecCCCCCCCCC------------CCC--CCceeEEEEEEEECHHHHHHHHhC-C
Confidence 75422 23344 5577789999999876432100 000 013689999999999999866543 1
Q ss_pred CCCCchhhhhHH--hhhhc-CceEEEEecceEEecCCHHHHHHHHH
Q 009720 327 PTSNDFGSEIIP--AAIME-HDVQAYIFRDYWEDIGTIKSFYEANM 369 (527)
Q Consensus 327 ~~~~d~~~dii~--~li~~-~~V~~~~~~g~w~dIgt~~d~~~An~ 369 (527)
....+ ..+.++ .++++ .+++++.++++|.|||||+||.+|+.
T Consensus 194 ~~~~~-~~~~~~~~~~~~~g~~v~~~~~~~~w~~i~t~~dl~~a~~ 238 (239)
T cd02517 194 PSPLE-QIESLEQLRALENGYKIKVVETDHESIGVDTPEDLERVEA 238 (239)
T ss_pred Cchhh-hhhhHHHHHHHHCCCceEEEEeCCCCCCCCCHHHHHHHHh
Confidence 11111 123333 34544 56999999999999999999999974
No 58
>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.89 E-value=2.2e-22 Score=192.99 Aligned_cols=223 Identities=15% Similarity=0.234 Sum_probs=149.5
Q ss_pred CCceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEe-ccCchhHHHHHHHhhccCCccc
Q 009720 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLT-QFNSASLNRHIARTYFGNGTNF 170 (527)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~-~~~~~~i~~hl~~~y~~~~~~~ 170 (527)
|..|+|||||||.|+||+| ..||||+.++|+ +||+|+|++|.+.|++++++|+ +|..+-+..++. .| .|
T Consensus 1 ~~~~kavILAAG~GsRlg~---~~PK~Lvev~gr-~ii~~~i~~L~~~gi~e~vvV~~g~~~~lve~~l~-~~-----~~ 70 (239)
T COG1213 1 MHPMKAVILAAGFGSRLGP---DIPKALVEVGGR-EIIYRTIENLAKAGITEFVVVTNGYRADLVEEFLK-KY-----PF 70 (239)
T ss_pred CCceeEEEEecccccccCC---CCCchhhhcCCe-EeHHHHHHHHHHcCCceEEEEeccchHHHHHHHHh-cC-----Cc
Confidence 5679999999999999999 899999999999 9999999999999999999999 887777766663 33 12
Q ss_pred CCCeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeecCCH-HHHHHHHHHcCCcEEEEEE
Q 009720 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDY-MDFIQSHVDRDADITISCA 249 (527)
Q Consensus 171 ~~~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~dl-~~ll~~h~~~~ad~tv~~~ 249 (527)
..+++...... ..+|+.+|..+++++. +.|++++||++|...+ +.+++ .... ++.+.
T Consensus 71 ---~~~iv~N~~y~-------ktN~~~Sl~~akd~~~-------~~fii~~sD~vye~~~~e~l~~----a~~~-~li~d 128 (239)
T COG1213 71 ---NAKIVINSDYE-------KTNTGYSLLLAKDYMD-------GRFILVMSDHVYEPSILERLLE----APGE-GLIVD 128 (239)
T ss_pred ---ceEEEeCCCcc-------cCCceeEEeeehhhhc-------CcEEEEeCCEeecHHHHHHHHh----CcCC-cEEEe
Confidence 24554433221 1367899999998886 6799999999998764 44443 2222 33333
Q ss_pred EcCCCCCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCCCC
Q 009720 250 AVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTS 329 (527)
Q Consensus 250 ~~~~~~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~~~ 329 (527)
..+-.....-.....+++|++..+..+-+.. ...++|++.|+.++|..+.+-.....
T Consensus 129 ~~~~~~~~~ea~kv~~e~G~i~~igK~l~e~-----------------------~~e~iGi~~l~~~i~~~~~~~~~e~~ 185 (239)
T COG1213 129 RRPRYVGVEEATKVKDEGGRIVEIGKDLTEY-----------------------DGEDIGIFILSDSIFEDTYELLVERS 185 (239)
T ss_pred ccccccccCceeEEEecCCEEehhcCCcccc-----------------------cceeeeeEEechHHHHHHHHHHhhhh
Confidence 2211111111223344789999887665422 45789999999998765443322211
Q ss_pred CchhhhhHHhhhhcCceEEEEe-----cceEEecCCHHHHHHHHHHhhc
Q 009720 330 NDFGSEIIPAAIMEHDVQAYIF-----RDYWEDIGTIKSFYEANMALTK 373 (527)
Q Consensus 330 ~d~~~dii~~li~~~~V~~~~~-----~g~w~dIgt~~d~~~An~~ll~ 373 (527)
.+ .+....+...+.+-.. ..+|.||+||+|+.+|...+..
T Consensus 186 -~~---~~~~~~~~~~~~~~~~di~~~g~~w~EVDtpeDl~~ar~~~~~ 230 (239)
T COG1213 186 -EY---DYREVEKEAGLPFTEVDIHVDGLFWMEVDTPEDLERARKYLVP 230 (239)
T ss_pred -hH---HHHHHHHHhCCceEEeeccccCceeEecCCHHHHHHHHHHHHH
Confidence 11 1222222222222222 2469999999999999988764
No 59
>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=99.87 E-value=8.6e-21 Score=187.09 Aligned_cols=225 Identities=17% Similarity=0.297 Sum_probs=153.1
Q ss_pred ceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHc-CCCEEEEEeccCchhHHHHHHHhhccCCcccCC
Q 009720 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINS-GINKIFVLTQFNSASLNRHIARTYFGNGTNFGD 172 (527)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~-Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~ 172 (527)
++.+||||+|.++||. +|+|+|++|+ |||+|+++.+.++ ++++|+|++++ +.+.+++. .+ +
T Consensus 2 ~~~aiIlA~g~s~R~~------~K~l~~i~Gk-Pli~~~i~~l~~~~~~~~ivv~t~~--~~i~~~~~-~~-------~- 63 (238)
T PRK13368 2 KVVVVIPARYGSSRLP------GKPLLDILGK-PMIQHVYERAAQAAGVEEVYVATDD--QRIEDAVE-AF-------G- 63 (238)
T ss_pred cEEEEEecCCCCCCCC------CCccCccCCc-CHHHHHHHHHHhcCCCCeEEEECCh--HHHHHHHH-Hc-------C-
Confidence 3689999999999994 5999999999 9999999999998 89999999964 55666653 22 2
Q ss_pred CeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce--eecCCHHHHHHHHHHcCC-cEEEEEE
Q 009720 173 GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDA-DITISCA 249 (527)
Q Consensus 173 ~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~--l~~~dl~~ll~~h~~~~a-d~tv~~~ 249 (527)
++++...+. +..|++ .+..+...++ .+.|+++.||+ +...++.++++.|.+.+. ++++++.
T Consensus 64 --~~v~~~~~~-------~~~g~~-~~~~a~~~~~------~d~~lv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~ 127 (238)
T PRK13368 64 --GKVVMTSDD-------HLSGTD-RLAEVMLKIE------ADIYINVQGDEPMIRPRDIDTLIQPMLDDPSINVATLCA 127 (238)
T ss_pred --CeEEecCcc-------CCCccH-HHHHHHHhCC------CCEEEEEcCCcCcCCHHHHHHHHHHHHHCCCccceeEEE
Confidence 223222221 124666 4555544432 47899999997 446779999998876543 5566666
Q ss_pred EcCC-CC---CCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhh
Q 009720 250 AVGE-SR---ASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWR 325 (527)
Q Consensus 250 ~~~~-~~---~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~ 325 (527)
+++. .+ +..+++ .++++|+++.+.|+|..... +. ...+++.++|+|+|++++|..+ +..
T Consensus 128 ~~~~~~~~~~p~~~~~-~~~~~g~v~~~~~~~~~~~~--------------~~-~~~~~~~n~giy~~~~~~l~~~-~~~ 190 (238)
T PRK13368 128 PISTEEEFESPNVVKV-VVDKNGDALYFSRSPIPSRR--------------DG-ESARYLKHVGIYAFRRDVLQQF-SQL 190 (238)
T ss_pred EcCCHHHhcCcCCCEE-EECCCCCEEEeeCCCCCCCC--------------CC-CCCceeEEEEEEEeCHHHHHHH-HcC
Confidence 5543 11 334544 44667999999976532110 00 0013578999999999999753 322
Q ss_pred CCCC-Cchhh-hhHHhhh-hcCceEEEEecceEEecCCHHHHHHHHHH
Q 009720 326 YPTS-NDFGS-EIIPAAI-MEHDVQAYIFRDYWEDIGTIKSFYEANMA 370 (527)
Q Consensus 326 ~~~~-~d~~~-dii~~li-~~~~V~~~~~~g~w~dIgt~~d~~~An~~ 370 (527)
.+.. ..+.. +++ .++ ...++++|..+++|.||||++||..|+..
T Consensus 191 ~~~~~~~~~~~~~~-~~~~~g~~v~~~~~~~~~~DI~t~~Dl~~a~~~ 237 (238)
T PRK13368 191 PETPLEQIESLEQL-RALEHGEKIRMVEVAATSIGVDTPEDLERVRAI 237 (238)
T ss_pred CCChhhhhhhHHHH-HHHHCCCceEEEEeCCCCCCCCCHHHHHHHHHh
Confidence 1111 11222 555 454 44679999989999999999999999763
No 60
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=99.83 E-value=2.1e-19 Score=193.09 Aligned_cols=241 Identities=17% Similarity=0.288 Sum_probs=158.3
Q ss_pred eEEEEEeCCCCCccccCccC-CCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhH-HHHHHHhhccCCcccCC
Q 009720 95 VAAIILGGGAGTKLFPLTLR-AATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASL-NRHIARTYFGNGTNFGD 172 (527)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~-~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i-~~hl~~~y~~~~~~~~~ 172 (527)
|.+||||||.||||+|+|.. .||||+|++|..|||+++++.+...++.+.+|+|+.....+ .+.+. . ++.
T Consensus 6 ~~~vIlaGG~GtRlwPlS~~~~PKq~l~l~~~~sllq~t~~r~~~~~~~~~iivt~~~~~~~v~~ql~-~-------~~~ 77 (478)
T PRK15460 6 LYPVVMAGGSGSRLWPLSRVLYPKQFLCLKGDLTMLQTTICRLNGVECESPVVICNEQHRFIVAEQLR-Q-------LNK 77 (478)
T ss_pred eEEEEECCCCccccccCCCCCCCcceeECCCCCCHHHHHHHHHHhCCCCCcEEEeCHHHHHHHHHHHH-h-------cCC
Confidence 79999999999999999998 79999999653399999999999888888888887654333 22221 1 110
Q ss_pred CeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeecCC--HHHHHHHHH---HcCCcEEEE
Q 009720 173 GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD--YMDFIQSHV---DRDADITIS 247 (527)
Q Consensus 173 ~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~d--l~~ll~~h~---~~~ad~tv~ 247 (527)
....++..... ++||.|+..+..++.........-++++++||+.... |.+.+++.. +.+.-+|+.
T Consensus 78 ~~~~ii~EP~~---------rnTApaialaa~~~~~~~~~~~~~v~vlPaDH~I~d~~~F~~~i~~A~~~A~~~~lvt~G 148 (478)
T PRK15460 78 LTENIILEPAG---------RNTAPAIALAALAAKRHSPESDPLMLVLAADHVIADEDAFRAAVRNAMPYAEAGKLVTFG 148 (478)
T ss_pred ccccEEecCCC---------CChHHHHHHHHHHHHHhcCCCCCeEEEeccccccCCHHHHHHHHHHHHHHHhcCCEEEEe
Confidence 00134433222 5899998877666642100113568899999988532 555555432 234434444
Q ss_pred EEEcCCCCCCCceEEEECCC---------CceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHH
Q 009720 248 CAAVGESRASDYGLVKIDNM---------GRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVL 318 (527)
Q Consensus 248 ~~~~~~~~~~~~g~v~~D~~---------g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL 318 (527)
..|... .+.||+++.++. .+|.+|.|||.....+.+.- ...+++|+|||+|+.+.|
T Consensus 149 I~Pt~P--eTgyGYI~~g~~~~~~~~~~~~~V~~F~EKPd~~tA~~yl~-------------~G~y~WNsGiF~~~a~~~ 213 (478)
T PRK15460 149 IVPDLP--ETGYGYIRRGEVSAGEQDTVAFEVAQFVEKPNLETAQAYVA-------------SGEYYWNSGMFLFRAGRY 213 (478)
T ss_pred cCCCCC--CCCCCeEEeCCccccccccCceEeeEEEeCCCHHHHHHHHH-------------cCCEEEecceeheeHHHH
Confidence 443332 357999988642 26999999998765443321 235899999999999988
Q ss_pred HHHHHhhCCCC--------------Cch--h-hhh--------HHhhhhc--CceEEEEecceEEecCCHHHHHHH
Q 009720 319 FKLLRWRYPTS--------------NDF--G-SEI--------IPAAIME--HDVQAYIFRDYWEDIGTIKSFYEA 367 (527)
Q Consensus 319 ~~ll~~~~~~~--------------~d~--~-~di--------i~~li~~--~~V~~~~~~g~w~dIgt~~d~~~A 367 (527)
...+++..|.. .++ . .+. |..++-+ .++.+.+.+-.|.|+|++.++.+.
T Consensus 214 l~~~~~~~P~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~iSiDyavmEk~~~v~vvp~~f~WsDvGsW~sl~~~ 289 (478)
T PRK15460 214 LEELKKYRPDILDACEKAMSAVDPDLDFIRVDEEAFLACPEESVDYAVMERTADAVVVPMDAGWSDVGSWSSLWEI 289 (478)
T ss_pred HHHHHHHCHHHHHHHHHHHHhccCcccceeeCHHHHhhCcCcchhhhhhcccCceEEEecCCCccccCCHHHHHHh
Confidence 77666554420 010 0 111 2222222 567888877779999999999886
No 61
>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.79 E-value=4.2e-18 Score=169.91 Aligned_cols=243 Identities=18% Similarity=0.302 Sum_probs=160.9
Q ss_pred ceEEEEEeCCCCCccccCcc-CCCccceeeCC-cchhHHHHHHHHHH-cCCCEEEEEeccCchhHHHHHHHhhccCCccc
Q 009720 94 NVAAIILGGGAGTKLFPLTL-RAATPAVPVAG-CYRLIDIPMSNCIN-SGINKIFVLTQFNSASLNRHIARTYFGNGTNF 170 (527)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~-~~PKpLlpIgG-k~pLId~~l~~l~~-~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~ 170 (527)
+|++||||||.|||||||+. ..||+++++.| + .|++.++..+.. .+..++++||+.....+ +.+++-+-+.+.
T Consensus 1 ~~~pvIlaGG~GsRLWPLSR~~~PKQFl~L~~~~-Sllq~T~~R~~~l~~~~~~~vVtne~~~f~---v~eql~e~~~~~ 76 (333)
T COG0836 1 MMIPVILAGGSGSRLWPLSRKDYPKQFLKLFGDL-SLLQQTVKRLAFLGDIEEPLVVTNEKYRFI---VKEQLPEIDIEN 76 (333)
T ss_pred CceeEEEeCCCccccCCcCcccCCccceeeCCCC-cHHHHHHHHHhhcCCccCeEEEeCHHHHHH---HHHHHhhhhhcc
Confidence 37899999999999999975 59999999955 6 999999999988 57899999998755332 112221111111
Q ss_pred CCCeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeecCC--HHHHHHHH---HHcCCcEE
Q 009720 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD--YMDFIQSH---VDRDADIT 245 (527)
Q Consensus 171 ~~~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~d--l~~ll~~h---~~~~ad~t 245 (527)
. .+++-.... +.||.|+..+.-.+.. +..+.-++|+++||+.... |.+.++.. .+.+.-+|
T Consensus 77 ~---~~illEP~g---------RnTApAIA~aa~~~~~--~~~d~~~lVlpsDH~I~d~~af~~av~~A~~~A~~g~lVT 142 (333)
T COG0836 77 A---AGIILEPEG---------RNTAPAIALAALSATA--EGGDALVLVLPSDHVIADEEAFLNAVKKAEKAAEEGGIVT 142 (333)
T ss_pred c---cceEeccCC---------CCcHHHHHHHHHHHHH--hCCCcEEEEecCcceeccHHHHHHHHHHHHHHHHcCCEEE
Confidence 0 113332222 4899999877655542 1223469999999988543 66666653 23454344
Q ss_pred EEEEEcCCCCCCCceEEEECC------CCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHH
Q 009720 246 ISCAAVGESRASDYGLVKIDN------MGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLF 319 (527)
Q Consensus 246 v~~~~~~~~~~~~~g~v~~D~------~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~ 319 (527)
+...|... ...||+++..+ -.+|.+|.|||.....+.+. ....+++|+|+|+|+...+.
T Consensus 143 fGI~Pt~P--eTGYGYIe~G~~~~~~~~~~V~~FvEKPd~etA~~yv-------------~sG~y~WNSGmF~Fra~~~l 207 (333)
T COG0836 143 FGIPPTRP--ETGYGYIETGESIAENGVYKVDRFVEKPDLETAKKYV-------------ESGEYLWNSGMFLFRASVFL 207 (333)
T ss_pred EecCCCCC--ccCcceeecCcccccCCceEeeeeeeCCCHHHHHHHH-------------HcCceEeeccceEEEHHHHH
Confidence 44433322 35799998854 23699999999876543322 12358999999999999887
Q ss_pred HHHHhhCCCC-----------Cc----------hh---hhhHHhhhhc--CceEEEEecceEEecCCHHHHHHHHH
Q 009720 320 KLLRWRYPTS-----------ND----------FG---SEIIPAAIME--HDVQAYIFRDYWEDIGTIKSFYEANM 369 (527)
Q Consensus 320 ~ll~~~~~~~-----------~d----------~~---~dii~~li~~--~~V~~~~~~g~w~dIgt~~d~~~An~ 369 (527)
+.++...|.- .+ |. ..=+..++-+ .++.+.+.+-.|-|+|++.++++...
T Consensus 208 ~e~~~~~P~i~~~~~~~~~~~~d~~~~~l~~e~f~~~p~iSIDYAiMEkt~~~aVVp~~f~WsDlGsW~Al~~~~~ 283 (333)
T COG0836 208 EELKKHQPDIYCAAEKAFEAAVDENSVRLDNEAYEEIPAISIDYAIMEKTSKAAVVPADFGWSDLGSWHALWEVLD 283 (333)
T ss_pred HHHHhhCcHHHHHHHHHHhcccccchhcccHHHHhhCcccchhHHHHhhhcceEEEecCCCcccccCHHHHHHHhh
Confidence 7777655430 00 10 0113333323 67888888878999999999988643
No 62
>COG4750 LicC CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane]
Probab=99.78 E-value=5.7e-18 Score=156.43 Aligned_cols=219 Identities=16% Similarity=0.203 Sum_probs=152.6
Q ss_pred eEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCcccCCCe
Q 009720 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (527)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~~ 174 (527)
|.|||||||.||||.|||...||+|+.|.|+ |||+++++.|.++||++|+||+||..+++ ++|...| +
T Consensus 1 ~nAIIlAAG~gsR~~plT~~tpK~LlkV~g~-plIErqI~~L~e~gI~dI~IVvGYlkE~F-eYLkdKy-------~--- 68 (231)
T COG4750 1 MNAIILAAGLGSRFVPLTQSTPKSLLKVNGE-PLIERQIEQLREAGIDDITIVVGYLKEQF-EYLKDKY-------D--- 68 (231)
T ss_pred CceEEEecccccccccccccCChHHHHhcCc-ccHHHHHHHHHHCCCceEEEEeeehHHHH-HHHHHhc-------C---
Confidence 6799999999999999999999999999999 99999999999999999999999988775 6776555 2
Q ss_pred EEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeecCCHHHHHHHHHHcCCcEEEEEEEcCCC
Q 009720 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGES 254 (527)
Q Consensus 175 V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tv~~~~~~~~ 254 (527)
|+++....-. .-....++..|+++++ +.-++.+|.....++ +........-+......
T Consensus 69 vtLvyN~kY~-------~yNn~ySlyla~d~l~--------ntYiidsDnyl~kNi------f~~~~~~S~Yfav~~~~- 126 (231)
T COG4750 69 VTLVYNPKYR-------EYNNIYSLYLARDFLN--------NTYIIDSDNYLTKNI------FLTKESHSKYFAVYRSG- 126 (231)
T ss_pred eEEEeCchHH-------hhhhHHHHHHHHHHhc--------ccEEeccchHhhhhh------hhcCcccceEEEEEecC-
Confidence 6666543221 1256688999999885 578899999876654 11111111212211111
Q ss_pred CCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHH---HHHHHHhhCCCC--
Q 009720 255 RASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDV---LFKLLRWRYPTS-- 329 (527)
Q Consensus 255 ~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~i---L~~ll~~~~~~~-- 329 (527)
..+-=++..+.+|+|+++.---. ..+..+|+..|+... +.++++..+-..
T Consensus 127 -~tnEw~l~~~~~~ki~~v~Igg~------------------------~~~imsG~sff~~~~~~ki~~ll~~~yv~~e~ 181 (231)
T COG4750 127 -KTNEWLLIYNSDGKITRVDIGGL------------------------NGYIMSGISFFDAQFSNKIKKLLKEYYVRLEN 181 (231)
T ss_pred -CCceeEEEEcCCCcEEEEEecCc------------------------ccceEeeeeeecchhHHHHHHHHHHHHhCchh
Confidence 12222466778899998764211 256788999999763 445666554221
Q ss_pred Cc-hhhhhHHhhhhcCceEEEEecc-eEEecCCHHHHHHHHHHhh
Q 009720 330 ND-FGSEIIPAAIMEHDVQAYIFRD-YWEDIGTIKSFYEANMALT 372 (527)
Q Consensus 330 ~d-~~~dii~~li~~~~V~~~~~~g-~w~dIgt~~d~~~An~~ll 372 (527)
.. |...+.-.-+++.+++.-..++ .-+++++.++|.+....++
T Consensus 182 ~k~yWd~v~~~ni~~l~m~iek~~~n~IyE~DsLdelrk~~~~~l 226 (231)
T COG4750 182 RKLYWDTVPMENIKELDMYIEKLNDNDIYEFDSLDELRKFEQKFL 226 (231)
T ss_pred hhHHHHHHHHHHHHHHhHhHHhhcCCceEEeccHHHHHhhhhhhc
Confidence 12 3344555566667777666654 4678999999988776644
No 63
>PLN02917 CMP-KDO synthetase
Probab=99.75 E-value=2e-16 Score=161.15 Aligned_cols=235 Identities=15% Similarity=0.168 Sum_probs=155.1
Q ss_pred CceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCcccCC
Q 009720 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGD 172 (527)
Q Consensus 93 ~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~ 172 (527)
.++.+||||+|.++||. +|+|+|++|+ |||+|+++.+..++..+.++ +..+.+++.+++. . ++
T Consensus 46 ~~i~aIIpA~G~SsR~~------~K~L~~i~Gk-PLL~~vi~~a~~~~~~~~VV-V~~~~e~I~~~~~-~-------~~- 108 (293)
T PLN02917 46 SRVVGIIPARFASSRFE------GKPLVHILGK-PMIQRTWERAKLATTLDHIV-VATDDERIAECCR-G-------FG- 108 (293)
T ss_pred CcEEEEEecCCCCCCCC------CCCeeeECCE-EHHHHHHHHHHcCCCCCEEE-EECChHHHHHHHH-H-------cC-
Confidence 35789999999999993 5999999999 99999999999876534433 3356677766553 2 12
Q ss_pred CeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceee--cCCHHHHHHHHHHcCCcEEE--EE
Q 009720 173 GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY--RMDYMDFIQSHVDRDADITI--SC 248 (527)
Q Consensus 173 ~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~--~~dl~~ll~~h~~~~ad~tv--~~ 248 (527)
++++...+.. ..||+++ ..+...++ ...+.++++.||.-+ ...+..+++.+.+. .+.++ ++
T Consensus 109 --v~vi~~~~~~-------~~GT~~~-~~a~~~l~----~~~d~Vlil~gD~PlI~~~tI~~li~~~~~~-~~~iv~t~~ 173 (293)
T PLN02917 109 --ADVIMTSESC-------RNGTERC-NEALKKLE----KKYDIVVNIQGDEPLIEPEIIDGVVKALQAA-PDAVFSTAV 173 (293)
T ss_pred --CEEEeCCccc-------CCchHHH-HHHHHhcc----CCCCEEEEecCCcCCCCHHHHHHHHHHHHhc-CCceEEEEe
Confidence 3333221211 1377776 56766664 124789999999833 45689999987653 44433 33
Q ss_pred EEcCCCCCCCceEEE--ECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhC
Q 009720 249 AAVGESRASDYGLVK--IDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRY 326 (527)
Q Consensus 249 ~~~~~~~~~~~g~v~--~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~ 326 (527)
.+...+++.+||.++ .|++|+++.|..++-.....+ .+ ..+.....++|+|.|+.+.|. .+....
T Consensus 174 ~~~~~~~~~~ygrv~vv~~~~g~alyfsr~~Ipe~kd~----------~~--~~~~i~~~n~Giy~f~~~~L~-~l~~l~ 240 (293)
T PLN02917 174 TSLKPEDASDPNRVKCVVDNQGYAIYFSRGLIPYNKSG----------KV--NPQFPYLLHLGIQSYDAKFLK-IYPELP 240 (293)
T ss_pred eecCHHHhcCCCceEEEECCCCeEEEeecCcCCcCCCc----------cc--ccccceEEEEEEEEeCHHHHH-HHHcCC
Confidence 344434467899875 788899887775532211000 00 012236889999999999998 444433
Q ss_pred CC---CCchhhhhHHhhhhc-CceEEEEecceEEecCCHHHHHHHHHHhhcc
Q 009720 327 PT---SNDFGSEIIPAAIME-HDVQAYIFRDYWEDIGTIKSFYEANMALTKE 374 (527)
Q Consensus 327 ~~---~~d~~~dii~~li~~-~~V~~~~~~g~w~dIgt~~d~~~An~~ll~~ 374 (527)
++ ...+.++++ ++++ .+|.++..+.....|||++|+.+|+..+.++
T Consensus 241 ~~n~e~e~yLtdl~--~le~G~~i~~~~~~~~~~GVnt~~dL~~ae~~~~~~ 290 (293)
T PLN02917 241 PTPLQLEEDLEQLK--VLENGYKMKVIKVDHEAHGVDTPEDVEKIEALMRER 290 (293)
T ss_pred CCcccchhccHHHH--HHhCCCceEEEEeCCCCCCCCCHHHHHHHHHHHHHc
Confidence 32 345566765 4444 6888888765566999999999999887543
No 64
>TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase. Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein.
Probab=99.61 E-value=2.3e-14 Score=139.43 Aligned_cols=210 Identities=14% Similarity=0.127 Sum_probs=139.6
Q ss_pred EEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHc-CCCEEEEEeccCc-hhHHHHHHHhhccCCcccCCCe
Q 009720 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINS-GINKIFVLTQFNS-ASLNRHIARTYFGNGTNFGDGF 174 (527)
Q Consensus 97 aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~-Gi~~I~Iv~~~~~-~~i~~hl~~~y~~~~~~~~~~~ 174 (527)
+||||||.|+||+. ..||+|+|++|+ |||+|+++++.++ ++++|+|++++.. +.+..++. . . ..
T Consensus 2 aiIlAaG~s~R~~~---~~~K~l~~l~gk-pll~~~l~~l~~~~~~~~ivVv~~~~~~~~~~~~~~-----~--~---~~ 67 (217)
T TIGR00453 2 AVIPAAGRGTRFGS---GVPKQYLELGGR-PLLEHTLDAFLAHPAIDEVVVVVSPEDQEFFQKYLV-----A--R---AV 67 (217)
T ss_pred EEEEcCcccccCCC---CCCccEeEECCe-EHHHHHHHHHhcCCCCCEEEEEEChHHHHHHHHHhh-----c--C---Cc
Confidence 79999999999963 369999999999 9999999999998 8999999998753 23322221 1 0 01
Q ss_pred EEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-ee-cCCHHHHHHHHHHcCCcEEEEEEEcC
Q 009720 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LY-RMDYMDFIQSHVDRDADITISCAAVG 252 (527)
Q Consensus 175 V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~-l~-~~dl~~ll~~h~~~~ad~tv~~~~~~ 252 (527)
++++... .+..++++.++..++ ..+.++++.||. +. ...+..+++.+.+. +.++.+.+..
T Consensus 68 ~~~~~~~-----------~~~~~sl~~~l~~~~-----~~d~vlv~~~D~P~i~~~~i~~li~~~~~~--~~~~~~~~~~ 129 (217)
T TIGR00453 68 PKIVAGG-----------DTRQDSVRNGLKALK-----DAEWVLVHDAARPFVPKELLDRLLEALRKA--GAAILALPVA 129 (217)
T ss_pred EEEeCCC-----------chHHHHHHHHHHhCC-----CCCEEEEccCccCCCCHHHHHHHHHHHhhC--CcEEEeEecc
Confidence 3333211 134578888876661 247899999998 33 45578888877653 3444554443
Q ss_pred CCCCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCCCCCch
Q 009720 253 ESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDF 332 (527)
Q Consensus 253 ~~~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~~~~d~ 332 (527)
.++..+|++|.+..+.|+... ....+ .|.|+...|.+++.....+. .+
T Consensus 130 ------~~v~~~~~~g~~~~~~~r~~~------------------------~~~~~-p~~f~~~~l~~~~~~~~~~~-~~ 177 (217)
T TIGR00453 130 ------DTLKRVEADGFIVETVDREGL------------------------WAAQT-PQAFRTELLKKALARAKEEG-FE 177 (217)
T ss_pred ------ceEEEEcCCCceeecCChHHe------------------------EEEeC-CCcccHHHHHHHHHHHHhcC-CC
Confidence 335555667878777663211 22333 69999999988776433222 22
Q ss_pred hhhhHHhhhh-cCceEEEEecceEEecCCHHHHHHHHHH
Q 009720 333 GSEIIPAAIM-EHDVQAYIFRDYWEDIGTIKSFYEANMA 370 (527)
Q Consensus 333 ~~dii~~li~-~~~V~~~~~~g~w~dIgt~~d~~~An~~ 370 (527)
..|....+.. ..++..+..+..+.+|+|++||..|...
T Consensus 178 ~~d~~~~~~~~g~~i~~~~~~~~~~~I~~~~Dl~~ae~~ 216 (217)
T TIGR00453 178 ITDDASAVEKLGGKVALVEGDALNFKITTPEDLALAEAL 216 (217)
T ss_pred CCcHHHHHHHcCCCeEEEecCccccccCCHHHHHHHHHh
Confidence 3443433333 3678777777667899999999888653
No 65
>PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed
Probab=99.60 E-value=3.6e-14 Score=139.17 Aligned_cols=217 Identities=16% Similarity=0.122 Sum_probs=141.0
Q ss_pred CceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcC-CCEEEEEeccCc-hhHHHHHHHhhccCCccc
Q 009720 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSG-INKIFVLTQFNS-ASLNRHIARTYFGNGTNF 170 (527)
Q Consensus 93 ~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~G-i~~I~Iv~~~~~-~~i~~hl~~~y~~~~~~~ 170 (527)
.++.+||||||.|+||+ ...||+|+|++|+ |||+|+++++..++ +++|+|++++.. +.+.+ .+... .
T Consensus 2 ~~~~~iILAaG~s~R~g---~~~~K~l~~~~g~-pli~~~l~~l~~~~~~~~ivvv~~~~~~~~~~~----~~~~~---~ 70 (227)
T PRK00155 2 MMVYAIIPAAGKGSRMG---ADRPKQYLPLGGK-PILEHTLEAFLAHPRIDEIIVVVPPDDRPDFAE----LLLAK---D 70 (227)
T ss_pred CceEEEEEcCccccccC---CCCCceeeEECCE-EHHHHHHHHHHcCCCCCEEEEEeChHHHHHHHH----Hhhcc---C
Confidence 45789999999999995 3479999999999 99999999999865 899999998754 22222 11111 0
Q ss_pred CCCeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCcee-e-cCCHHHHHHHHHHcCCcEEEEE
Q 009720 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHL-Y-RMDYMDFIQSHVDRDADITISC 248 (527)
Q Consensus 171 ~~~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l-~-~~dl~~ll~~h~~~~ad~tv~~ 248 (527)
..+.++.. . .+.+++++.++..++ ..+.++++.||.- . ...+..+++.+.+.+ ..+.+
T Consensus 71 --~~~~~~~~--~---------~~~~~sv~~~l~~~~-----~~d~vlv~~~D~P~i~~~~i~~li~~~~~~~--~~~~~ 130 (227)
T PRK00155 71 --PKVTVVAG--G---------AERQDSVLNGLQALP-----DDDWVLVHDAARPFLTPDDIDRLIEAAEETG--AAILA 130 (227)
T ss_pred --CceEEeCC--c---------chHHHHHHHHHHhCC-----CCCEEEEccCccCCCCHHHHHHHHHHHhhCC--CEEEE
Confidence 11333321 1 256889998887663 2468999999983 3 455899999876653 34444
Q ss_pred EEcCCCCCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCCC
Q 009720 249 AAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT 328 (527)
Q Consensus 249 ~~~~~~~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~~ 328 (527)
.+..+ .+..+ +++|.+..+.+. .. ....-+.|.|+.+.|.+++......
T Consensus 131 ~~~~~----~~~~v--~~~g~~~~~~~r---~~----------------------~~~~~~p~~f~~~~l~~~~~~~~~~ 179 (227)
T PRK00155 131 VPVKD----TIKRS--DDGGGIVDTPDR---SG----------------------LWAAQTPQGFRIELLREALARALAE 179 (227)
T ss_pred Eeccc----cEEEE--cCCCceeecCCh---HH----------------------heeeeCCccchHHHHHHHHHHHHhc
Confidence 44433 12222 556766655321 11 1122247999999988877654322
Q ss_pred CCchhhhhHHhhhh-cCceEEEEecceEEecCCHHHHHHHHHHhh
Q 009720 329 SNDFGSEIIPAAIM-EHDVQAYIFRDYWEDIGTIKSFYEANMALT 372 (527)
Q Consensus 329 ~~d~~~dii~~li~-~~~V~~~~~~g~w~dIgt~~d~~~An~~ll 372 (527)
..+..|....+.+ ..++..+..+..+.+|+|++||..|...+.
T Consensus 180 -~~~~~d~~~~~~~~~~~i~~~~~~~~~~~Idt~~Dl~~ae~~~~ 223 (227)
T PRK00155 180 -GKTITDDASAVERLGKPVRLVEGRYDNIKITTPEDLALAEAILK 223 (227)
T ss_pred -CCCcCcHHHHHHHcCCCeEEEecCcccccCCCHHHHHHHHHHHH
Confidence 2233443333322 256777776666889999999999987654
No 66
>TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase.
Probab=99.60 E-value=9.8e-14 Score=137.42 Aligned_cols=228 Identities=15% Similarity=0.219 Sum_probs=145.4
Q ss_pred EEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCcccCCCeEE
Q 009720 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVE 176 (527)
Q Consensus 97 aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~~V~ 176 (527)
+||+|+|.|+||. +|+|++++|+ |||.|+++++.++++++|+|++.. +.+.+++. . ++ ++
T Consensus 2 ~iIpA~g~s~R~~------~K~L~~l~Gk-Pli~~~le~~~~~~~d~VvVvt~~--~~i~~~~~-~-------~g---~~ 61 (238)
T TIGR00466 2 VIIPARLASSRLP------GKPLEDIFGK-PMIVHVAENANESGADRCIVATDD--ESVAQTCQ-K-------FG---IE 61 (238)
T ss_pred EEEecCCCCCCCC------CCeecccCCc-CHHHHHHHHHHhCCCCeEEEEeCH--HHHHHHHH-H-------cC---CE
Confidence 7999999999993 7999999999 999999999999899999999864 44554443 2 22 22
Q ss_pred EeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-ee-cCCHHHHHHHHHHcCCcEEEEEEEcCCC
Q 009720 177 VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LY-RMDYMDFIQSHVDRDADITISCAAVGES 254 (527)
Q Consensus 177 vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~-l~-~~dl~~ll~~h~~~~ad~tv~~~~~~~~ 254 (527)
++...+.. ..|+ +.+..+...+. ....+.++++.||. +. ...+.++++.+.+.+.++++.+.+..+.
T Consensus 62 ~v~~~~~~-------~~Gt-~r~~~~~~~l~---~~~~d~Vli~~gD~Pli~~~~I~~li~~~~~~~~~~a~~~~~~~d~ 130 (238)
T TIGR00466 62 VCMTSKHH-------NSGT-ERLAEVVEKLA---LKDDERIVNLQGDEPFIPKEIIRQVADNLATKNVPMAALAVKIHDA 130 (238)
T ss_pred EEEeCCCC-------CChh-HHHHHHHHHhC---CCCCCEEEEEcCCcCcCCHHHHHHHHHHHhcCCCCEEEEeeecCCH
Confidence 22111110 1244 33433433332 01236788899998 33 3457889988766567788888876542
Q ss_pred CC---CCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCCCCCc
Q 009720 255 RA---SDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSND 331 (527)
Q Consensus 255 ~~---~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~~~~d 331 (527)
.. .+...+..|++|+...|...+-......+ .....|+. ..++...|+|.|++++|.++.... ++..+
T Consensus 131 ~~~~~p~~vk~v~~~~g~alyfsr~~ip~~R~~~-----~~~~tpq~---~~~~~h~Giy~~~~~~L~~~~~~~-~~~le 201 (238)
T TIGR00466 131 EEAFNPNAVKVVLDSQGYALYFSRSLIPFDRDFF-----AKRQTPVG---DNLLRHIGIYGYRAGFIEEYVAWK-PCVLE 201 (238)
T ss_pred HHccCCCceEEEeCCCCeEEEecCCCCCCCCCcc-----cccccccc---cceeEEEEEEeCCHHHHHHHHhCC-CCccc
Confidence 11 22444555788988888776432110000 00112221 236779999999999998876542 22111
Q ss_pred -hh-hhhHHhhhhcCceEEEEecce-EEecCCHHHH
Q 009720 332 -FG-SEIIPAAIMEHDVQAYIFRDY-WEDIGTIKSF 364 (527)
Q Consensus 332 -~~-~dii~~li~~~~V~~~~~~g~-w~dIgt~~d~ 364 (527)
.+ -|.++.+-.+.+|.+...++. -..|+||+|+
T Consensus 202 ~~e~leqlr~le~g~~i~~~~~~~~~~~~vdt~~d~ 237 (238)
T TIGR00466 202 EIEKLEQLRVLYYGEKIHVKIAQEVPSVGVDTQEDL 237 (238)
T ss_pred ccchhHHHhhhhcCCceEEEEeCCCCCCCCCChHHc
Confidence 11 245666666689998888765 4589999997
No 67
>cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production. 4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.
Probab=99.59 E-value=4.4e-14 Score=137.22 Aligned_cols=212 Identities=17% Similarity=0.180 Sum_probs=141.1
Q ss_pred EEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcC-CCEEEEEeccCchhHHHHHHHhhccCCcccCCCe
Q 009720 96 AAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSG-INKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (527)
Q Consensus 96 ~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~G-i~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~~ 174 (527)
.+||||||.|+||++. .||+|+|++|+ |||+|+++++..++ +++|+|++++........+ +.+ . .. ..
T Consensus 2 ~~vILAaG~s~R~~~~---~~K~l~~i~Gk-pll~~~i~~l~~~~~~~~ivVv~~~~~~~~~~~~-~~~-~----~~-~~ 70 (218)
T cd02516 2 AAIILAAGSGSRMGAD---IPKQFLELGGK-PVLEHTLEAFLAHPAIDEIVVVVPPDDIDLAKEL-AKY-G----LS-KV 70 (218)
T ss_pred EEEEECCcccccCCCC---CCcceeEECCe-EHHHHHHHHHhcCCCCCEEEEEeChhHHHHHHHH-Hhc-c----cC-CC
Confidence 5899999999999752 79999999999 99999999999976 8999999987654443332 111 0 01 11
Q ss_pred EEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCcee-e-cCCHHHHHHHHHHcCCcEEEEEEEcC
Q 009720 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHL-Y-RMDYMDFIQSHVDRDADITISCAAVG 252 (527)
Q Consensus 175 V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l-~-~~dl~~ll~~h~~~~ad~tv~~~~~~ 252 (527)
+.++... .+..++++.++..++. ...+.++++.||+- . ...+..+++.+.+.++ .+.+.+..
T Consensus 71 ~~~~~~~-----------~~~~~si~~al~~~~~---~~~~~vlv~~~D~P~i~~~~i~~li~~~~~~~~--~~~~~~~~ 134 (218)
T cd02516 71 VKIVEGG-----------ATRQDSVLNGLKALPD---ADPDIVLIHDAARPFVSPELIDRLIDALKEYGA--AIPAVPVT 134 (218)
T ss_pred eEEECCc-----------hHHHHHHHHHHHhccc---CCCCEEEEccCcCCCCCHHHHHHHHHHHhhCCc--EEEEEecc
Confidence 3443221 1457889988877631 13478999999983 3 3457899998865443 34444433
Q ss_pred CCCCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCCCCCch
Q 009720 253 ESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDF 332 (527)
Q Consensus 253 ~~~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~~~~d~ 332 (527)
+ ++...|++|.+..+.|..+. ....++ ++|+.+.|..++...... ..+
T Consensus 135 ~------~~~~~~~~g~~~~~~~r~~~------------------------~~~~~P-~~f~~~~~~~~~~~~~~~-~~~ 182 (218)
T cd02516 135 D------TIKRVDDDGVVVETLDREKL------------------------WAAQTP-QAFRLDLLLKAHRQASEE-GEE 182 (218)
T ss_pred c------cEEEecCCCceeecCChHHh------------------------hhhcCC-CcccHHHHHHHHHHHHhc-CCC
Confidence 2 23446778989888764221 345566 999999998887665433 223
Q ss_pred hhhhHHhhhhc-CceEEEEecceEEecCCHHHHHH
Q 009720 333 GSEIIPAAIME-HDVQAYIFRDYWEDIGTIKSFYE 366 (527)
Q Consensus 333 ~~dii~~li~~-~~V~~~~~~g~w~dIgt~~d~~~ 366 (527)
.+|....+.+. .++..+..+..-.||+||+||..
T Consensus 183 ~td~~~~~~~~~~~v~~v~~~~~~~~i~t~~dl~~ 217 (218)
T cd02516 183 FTDDASLVEAAGGKVALVEGSEDNIKITTPEDLAL 217 (218)
T ss_pred cCcHHHHHHHcCCCeEEEecCcccccCCCHHHHhh
Confidence 44544333332 46777665555569999999954
No 68
>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional
Probab=99.55 E-value=2.8e-13 Score=142.39 Aligned_cols=208 Identities=13% Similarity=0.120 Sum_probs=139.3
Q ss_pred CCceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcC-CCEEEEEeccCchhHHHHHHHhhccCCccc
Q 009720 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSG-INKIFVLTQFNSASLNRHIARTYFGNGTNF 170 (527)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~G-i~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~ 170 (527)
|.++.+||||||.|+||. ...||+++|++|+ |||+|+++++.+++ +++|+|++++......+.+. .. +
T Consensus 3 mm~v~aIILAAG~GsRmg---~~~pKqll~l~Gk-Pll~~tl~~l~~~~~i~~IvVVv~~~~~~~~~~~~----~~---~ 71 (378)
T PRK09382 3 MSDISLVIVAAGRSTRFS---AEVKKQWLRIGGK-PLWLHVLENLSSAPAFKEIVVVIHPDDIAYMKKAL----PE---I 71 (378)
T ss_pred CCcceEEEECCCCCccCC---CCCCeeEEEECCe-eHHHHHHHHHhcCCCCCeEEEEeChHHHHHHHHhc----cc---C
Confidence 456889999999999994 4589999999999 99999999999987 79999999875544322221 11 1
Q ss_pred CCCeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-eec-CCHHHHHHHHHHcCCcEEEEE
Q 009720 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYR-MDYMDFIQSHVDRDADITISC 248 (527)
Q Consensus 171 ~~~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~-l~~-~dl~~ll~~h~~~~ad~tv~~ 248 (527)
. .+.++... .+..++|+.++..++ .+.+++..||. +.+ ..+..+++...+ .+.++.+
T Consensus 72 ~--~v~~v~gG-----------~~r~~SV~~gL~~l~------~d~VLVhdadrPfv~~e~I~~li~~~~~--~~a~i~~ 130 (378)
T PRK09382 72 K--FVTLVTGG-----------ATRQESVRNALEALD------SEYVLIHDAARPFVPKELIDRLIEALDK--ADCVLPA 130 (378)
T ss_pred C--eEEEeCCC-----------chHHHHHHHHHHhcC------CCeEEEeeccccCCCHHHHHHHHHHhhc--CCeEEEE
Confidence 1 13333211 246788999987774 26789999996 334 346777776543 3567788
Q ss_pred EEcCCCCCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCCC
Q 009720 249 AAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT 328 (527)
Q Consensus 249 ~~~~~~~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~~ 328 (527)
.++.+ +..|+...+|. ..+..+ ++|.... .+.+.+.. ..
T Consensus 131 ~pv~D--tik~~~~tldR-~~l~~~-QTPQ~f~---------------------------------~~~l~~a~----~~ 169 (378)
T PRK09382 131 LPVAD--TLKRANETVDR-EGLKLI-QTPQLSR---------------------------------TKTLKAAA----DG 169 (378)
T ss_pred EEecc--CcEEeeeEcCc-ccEEEE-ECCCCCC---------------------------------HHHHHHHH----hC
Confidence 88776 34566545543 355444 6776432 11122111 11
Q ss_pred CCchhhhhHHhhhhc-CceEEEEecceEEecCCHHHHHHHHHHhhc
Q 009720 329 SNDFGSEIIPAAIME-HDVQAYIFRDYWEDIGTIKSFYEANMALTK 373 (527)
Q Consensus 329 ~~d~~~dii~~li~~-~~V~~~~~~g~w~dIgt~~d~~~An~~ll~ 373 (527)
..+ .+|..+.+... .+|..+.-+..|.+|+||+||..|+..+..
T Consensus 170 ~~~-~TDd~sl~~~~G~~V~~v~g~~~n~KITtpeDL~~A~~~l~~ 214 (378)
T PRK09382 170 RGD-FTDDSSAAEAAGGKVALVEGSEDLHKLTYKEDLKMADLLLSP 214 (378)
T ss_pred CCC-cccHHHHHHHcCCcEEEEECCCcccCCCCHHHHHHHHHHhcc
Confidence 122 34555554443 688888888899999999999999887654
No 69
>cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety. CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm.
Probab=99.54 E-value=4.5e-13 Score=130.35 Aligned_cols=216 Identities=19% Similarity=0.220 Sum_probs=137.6
Q ss_pred ceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcC-CCEEEEEeccCchhHHHHHHHhhccCCcccCC
Q 009720 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSG-INKIFVLTQFNSASLNRHIARTYFGNGTNFGD 172 (527)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~G-i~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~ 172 (527)
++.+||||||.|+||. .|+|+|++|+ |||+|+++.+.+++ +++|+|++. .+.+.+++. .+ +.
T Consensus 1 ~~~~iIlA~G~s~R~~------~K~l~~l~Gk-pll~~~l~~l~~~~~~~~IvV~~~--~~~i~~~~~-~~-------~~ 63 (223)
T cd02513 1 KILAIIPARGGSKGIP------GKNIRPLGGK-PLIAWTIEAALESKLFDRVVVSTD--DEEIAEVAR-KY-------GA 63 (223)
T ss_pred CeEEEEecCCCCCCCC------CcccchhCCc-cHHHHHHHHHHhCCCCCEEEEECC--cHHHHHHHH-Hh-------CC
Confidence 3579999999999993 4999999999 99999999999987 788888773 455555443 21 10
Q ss_pred CeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce--eecCCHHHHHHHHHHcCCcEEEEEEE
Q 009720 173 GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAA 250 (527)
Q Consensus 173 ~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~--l~~~dl~~ll~~h~~~~ad~tv~~~~ 250 (527)
.+.++......+ -..|+.++++.++..+++. ....+.++++.||. +....+..+++.+.+.+++.++.+.+
T Consensus 64 -~~~~~~~~~~~~-----~~~~~~~~i~~~l~~l~~~-~~~~d~vlv~~~D~P~i~~~~i~~~i~~~~~~~~~~~~~~~~ 136 (223)
T cd02513 64 -EVPFLRPAELAT-----DTASSIDVILHALDQLEEL-GRDFDIVVLLQPTSPLRSAEDIDEAIELLLSEGADSVFSVTE 136 (223)
T ss_pred -CceeeCChHHCC-----CCCCcHHHHHHHHHHHHHh-CCCCCEEEEeCCCCCcCCHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 011221111000 0137889999998877521 01237899999999 44567899999988877887777776
Q ss_pred cCCCCCCCceEEEECCCC-ceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCCCC
Q 009720 251 VGESRASDYGLVKIDNMG-RIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTS 329 (527)
Q Consensus 251 ~~~~~~~~~g~v~~D~~g-~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~~~ 329 (527)
..+. .-++... +++| .+..+.++.... . ++ ....+..++|+|+++++.|.+. .
T Consensus 137 ~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~-~--------------q~-~~~~~~~n~~~y~~~~~~~~~~-------~ 190 (223)
T cd02513 137 FHRF--PWRALGL-DDNGLEPVNYPEDKRTR-R--------------QD-LPPAYHENGAIYIAKREALLES-------N 190 (223)
T ss_pred cCcC--cHHheee-ccCCceeccCcccccCC-c--------------CC-ChhHeeECCEEEEEEHHHHHhc-------C
Confidence 5542 2233332 2233 222221111100 0 00 0123567889999999977531 0
Q ss_pred CchhhhhHHhhhhcCceEEEEecce-EEecCCHHHHHHHHH
Q 009720 330 NDFGSEIIPAAIMEHDVQAYIFRDY-WEDIGTIKSFYEANM 369 (527)
Q Consensus 330 ~d~~~dii~~li~~~~V~~~~~~g~-w~dIgt~~d~~~An~ 369 (527)
.+ -..++..|..+.+ -.||+|++||..|..
T Consensus 191 -~~---------~g~~~~~~~~~~~~~~dI~~~~D~~~ae~ 221 (223)
T cd02513 191 -SF---------FGGKTGPYEMPRERSIDIDTEEDFELAEA 221 (223)
T ss_pred -Cc---------cCCCeEEEEeCccceeCCCCHHHHHHHHH
Confidence 00 1457878877764 789999999988864
No 70
>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase. Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.
Probab=99.54 E-value=1.6e-14 Score=142.10 Aligned_cols=134 Identities=25% Similarity=0.351 Sum_probs=75.1
Q ss_pred chhhhhHHhhhhcCceEEEEecceEEecCCHHHHHHHHHHhhccCCC-C---ccCCCCC-CCCCCCccCCCeeeeceeee
Q 009720 331 DFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKESPA-F---HFYDPKT-PFYTSPRFLPPTKIDNCRIK 405 (527)
Q Consensus 331 d~~~dii~~li~~~~V~~~~~~g~w~dIgt~~d~~~An~~ll~~~~~-~---~~~~~~~-~i~~~~~~~~p~~i~~~~i~ 405 (527)
+| .|.++.++.++ ++.++|||.|+ ++|++||.++++.... . ....+.. .+...+.+.+.+.+.+
T Consensus 29 ~~-~~~~~~~~~~~---~~~~~gyW~Di---~~yl~an~diL~~~~~~~~~~~~~~~~~~~vg~~~~I~~~a~I~g---- 97 (231)
T TIGR03532 29 DF-PESIKKFGSGH---SGVLFGEWEDI---EPFIEANKDKIKDYRIENDRRNSAIPLLDLKNINARIEPGAIIRD---- 97 (231)
T ss_pred cc-chheEEEecCC---cEEEEEeHHHH---HHHHHHhHhhhcceEEeecccccccccccccccccEECCCCEEeC----
Confidence 44 57888888766 88889999999 9999999999976421 0 0001111 1112223333333322
Q ss_pred eeEECCCCEEcc-eeE-eecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCcEEee--------
Q 009720 406 DAIISHGCFLRE-CTV-EHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRN-------- 475 (527)
Q Consensus 406 ~s~I~~g~~I~~-~~i-~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~-------- 475 (527)
.++||++|.|++ +.| .+++||++|.|++++.|...+.++++ +.||.++.|.+
T Consensus 98 ~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~I~~~s~Ig~~------------------~~Ig~~~~I~~~~~~~~~~ 159 (231)
T TIGR03532 98 QVIIGDNAVIMMGAVINIGAEIGEGTMIDMNAVLGGRATVGKN------------------VHIGAGAVLAGVIEPPSAK 159 (231)
T ss_pred CeEECCCCEEecCcccCCCeEECCCCEEccccccCCCcEECCC------------------cEEcCCcEEccccccccCC
Confidence 344444444442 222 24566666666666666433333332 66666666653
Q ss_pred -eEEcCCCEECCCcEEeCC
Q 009720 476 -CIIDKNVKIGKDVVIVNK 493 (527)
Q Consensus 476 -~iI~~~~~Ig~~~~i~~~ 493 (527)
++|++++.||.+++|...
T Consensus 160 ~v~IGd~v~IG~gsvI~~g 178 (231)
T TIGR03532 160 PVVIEDNVLIGANAVILEG 178 (231)
T ss_pred CeEECCCcEECCCCEEcCC
Confidence 566666666666666433
No 71
>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate.
Probab=99.53 E-value=2.9e-13 Score=128.24 Aligned_cols=119 Identities=13% Similarity=0.226 Sum_probs=88.2
Q ss_pred EEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCcccCCCeEE
Q 009720 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVE 176 (527)
Q Consensus 97 aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~~V~ 176 (527)
+||||||.|+||+ .||+|+|++|+ |||+|+++.+.++++++|+|++++..+++.+++.+ .++ +.
T Consensus 2 ~iIla~G~s~R~g-----~~K~ll~~~g~-pll~~~i~~l~~~~~~~iivv~~~~~~~~~~~~~~-------~~~---v~ 65 (188)
T TIGR03310 2 AIILAAGLSSRMG-----QNKLLLPYKGK-TILEHVVDNALRLFFDEVILVLGHEADELVALLAN-------HSN---IT 65 (188)
T ss_pred eEEECCCCcccCC-----CCceecccCCe-eHHHHHHHHHHHcCCCcEEEEeCCcHHHHHHHhcc-------CCC---eE
Confidence 7999999999997 58999999999 99999999999999999999999876554333321 122 45
Q ss_pred EeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCcee-e-cCCHHHHHHHHHHcCCcE
Q 009720 177 VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHL-Y-RMDYMDFIQSHVDRDADI 244 (527)
Q Consensus 177 vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l-~-~~dl~~ll~~h~~~~ad~ 244 (527)
++.... |..|++++++.++.+ . ...+.++++.||+- + ...+..+++.+.+.+.++
T Consensus 66 ~v~~~~--------~~~g~~~si~~~l~~-~----~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~ 122 (188)
T TIGR03310 66 LVHNPQ--------YAEGQSSSIKLGLEL-P----VQSDGYLFLLGDQPFVTPDIIQLLLEAFALKNDEI 122 (188)
T ss_pred EEECcC--------hhcCHHHHHHHHhcC-C----CCCCEEEEEeCCcCCCCHHHHHHHHHHHHhCCCcE
Confidence 543221 225889999988762 1 13478999999993 3 345788888776655543
No 72
>TIGR00454 conserved hypothetical protein TIGR00454. At this time this gene appears to be present only in Archea
Probab=99.52 E-value=9.1e-14 Score=132.21 Aligned_cols=123 Identities=20% Similarity=0.216 Sum_probs=93.2
Q ss_pred eEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCcccCCCe
Q 009720 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (527)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~~ 174 (527)
|.+||||||+||||++ .||+|+|++|+ |||+|+++++..+++++|+++++++.+.+..|+.+.+
T Consensus 1 m~aIILAgG~gsRmg~----~~K~Ll~i~Gk-plI~~vi~~l~~~~i~~I~Vv~~~~~~~~~~~l~~~~----------- 64 (183)
T TIGR00454 1 MDALIMAGGKGTRLGG----VEKPLIEVCGR-CLIDHVLSPLLKSKVNNIIIATSPHTPKTEEYINSAY----------- 64 (183)
T ss_pred CeEEEECCccCccCCC----CCceEeEECCE-EHHHHHHHHHHhCCCCEEEEEeCCCHHHHHHHHhhcC-----------
Confidence 6899999999999975 79999999999 9999999999999999999999987777766664211
Q ss_pred EEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceee--cCCHHHHHHHHHHcCCcEEEEE
Q 009720 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY--RMDYMDFIQSHVDRDADITISC 248 (527)
Q Consensus 175 V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~--~~dl~~ll~~h~~~~ad~tv~~ 248 (527)
..+.. +. -.|...++..++..+. ..++|++++||+.+ ...+..+++.+...+......+
T Consensus 65 ~~~~~-~~---------g~G~~~~l~~al~~~~-----~~~~~lv~~~D~P~i~~~~i~~li~~~~~~~~~~~~~~ 125 (183)
T TIGR00454 65 KDYKN-AS---------GKGYIEDLNECIGELY-----FSEPFLVVSSDLINLRSKIIDSIVDYYYCIKAPALAVM 125 (183)
T ss_pred cEEEe-cC---------CCCHHHHHHHHhhccc-----CCCCEEEEeCCcCcCCHHHHHHHHHHHHhcCCCceEEE
Confidence 12221 11 1477788888775442 24789999999854 5568889998766555444333
No 73
>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B ....
Probab=99.52 E-value=1e-13 Score=128.14 Aligned_cols=120 Identities=19% Similarity=0.298 Sum_probs=92.5
Q ss_pred EEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCcccCCCeEE
Q 009720 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVE 176 (527)
Q Consensus 97 aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~~V~ 176 (527)
+||||||.|+||+ .||+|+|++|+ |||+|+++.+.+.++++|+|++++ +++..++. .++ ++
T Consensus 1 ~vILa~G~s~Rmg-----~~K~l~~i~g~-~li~~~l~~l~~~~~~~Ivvv~~~--~~~~~~~~--------~~~---~~ 61 (160)
T PF12804_consen 1 AVILAAGKSSRMG-----GPKALLPIGGK-PLIERVLEALREAGVDDIVVVTGE--EEIYEYLE--------RYG---IK 61 (160)
T ss_dssp EEEEESSSCGGGT-----SCGGGSEETTE-EHHHHHHHHHHHHTESEEEEEEST--HHHHHHHT--------TTT---SE
T ss_pred CEEECCcCcccCC-----CCccceeECCc-cHHHHHHHHhhccCCceEEEecCh--HHHHHHHh--------ccC---ce
Confidence 6999999999996 49999999999 999999999999999999999988 34443332 112 45
Q ss_pred EeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceee-c-CCHHHHHHHHHHcCCcEEEEE
Q 009720 177 VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY-R-MDYMDFIQSHVDRDADITISC 248 (527)
Q Consensus 177 vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~-~-~dl~~ll~~h~~~~ad~tv~~ 248 (527)
++.... |..|+..+|+.++..+. ..+.|++++||+.+ + ..+..+++.+.+.+.++.+..
T Consensus 62 ~v~~~~--------~~~G~~~sl~~a~~~~~-----~~~~vlv~~~D~p~~~~~~l~~l~~~~~~~~~~i~~~~ 122 (160)
T PF12804_consen 62 VVVDPE--------PGQGPLASLLAALSQLP-----SSEPVLVLPCDQPFLSPELLRRLLEALEKSPADIVVPV 122 (160)
T ss_dssp EEE-ST--------SSCSHHHHHHHHHHTST-----TSSEEEEEETTETTS-HHHHHHHHHHHHHTTTSEEEEE
T ss_pred EEEecc--------ccCChHHHHHHHHHhcc-----cCCCcEEEeCCccccCHHHHHHHHHHHhccCCcEEEEE
Confidence 544332 12599999999987763 35899999999954 4 457999998887777765544
No 74
>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase. It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.
Probab=99.51 E-value=1.9e-13 Score=118.01 Aligned_cols=103 Identities=33% Similarity=0.542 Sum_probs=88.7
Q ss_pred Ceeee-ceeeeeeEECCCCEEcceeEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCcEEe
Q 009720 396 PTKID-NCRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR 474 (527)
Q Consensus 396 p~~i~-~~~i~~s~I~~g~~I~~~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~ 474 (527)
|+.|. +++|.+++||++|.|+++.|++|+||++|+|+++|+|.+++++++ +.||.++.|.
T Consensus 1 p~~i~~~~~i~~s~Ig~~~~I~~~~I~~svi~~~~~Ig~~~~I~~siI~~~-------------------~~Ig~~~~i~ 61 (104)
T cd04651 1 PPYIGRRGEVKNSLVSEGCIISGGTVENSVLFRGVRVGSGSVVEDSVIMPN-------------------VGIGRNAVIR 61 (104)
T ss_pred CceecCCCEEEeEEECCCCEEcCeEEEeCEEeCCCEECCCCEEEEeEEcCC-------------------CEECCCCEEE
Confidence 45564 478889999999999989999999999999999999999999987 8999999999
Q ss_pred eeEEcCCCEECCCcEEeCCCCcCCCccCCCceEEecCeEEEccCCEe
Q 009720 475 NCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATI 521 (527)
Q Consensus 475 ~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g~~vi~~~~~I 521 (527)
+|+|+++++|++++++.+.....+. .+.+..+|+++|++++++
T Consensus 62 ~siig~~~~Ig~~~~v~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 104 (104)
T cd04651 62 RAIIDKNVVIPDGVVIGGDPEEDRA----RFYVTEDGIVVVGKGMVI 104 (104)
T ss_pred eEEECCCCEECCCCEECCCcccccc----cceEcCCeEEEEecccCC
Confidence 9999999999999999887433332 445558899999988764
No 75
>PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional
Probab=99.50 E-value=1.1e-12 Score=129.17 Aligned_cols=218 Identities=14% Similarity=0.126 Sum_probs=135.9
Q ss_pred eEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHc-CCCEEEEEeccCchh-HHHHHHHhhccCCcccCC
Q 009720 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINS-GINKIFVLTQFNSAS-LNRHIARTYFGNGTNFGD 172 (527)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~-Gi~~I~Iv~~~~~~~-i~~hl~~~y~~~~~~~~~ 172 (527)
+.+||||||.|+||+ ...||+|++++|+ |||+|+++++.++ .+++|+|+++..... +.+.+ +.| + +..
T Consensus 3 ~~~iIlAaG~g~R~g---~~~~K~l~~l~gk-pll~~~i~~~~~~~~~~~ivVv~~~~~~~~~~~~~-~~~-~----~~~ 72 (230)
T PRK13385 3 YELIFLAAGQGKRMN---APLNKMWLDLVGE-PIFIHALRPFLADNRCSKIIIVTQAQERKHVQDLM-KQL-N----VAD 72 (230)
T ss_pred eEEEEECCeeccccC---CCCCcceeEECCe-EHHHHHHHHHHcCCCCCEEEEEeChhhHHHHHHHH-Hhc-C----cCC
Confidence 679999999999996 3479999999999 9999999999886 589999999764322 22222 222 1 111
Q ss_pred CeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-eec-CCHHHHHHHHHHcCCcEEEEEEE
Q 009720 173 GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYR-MDYMDFIQSHVDRDADITISCAA 250 (527)
Q Consensus 173 ~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~-l~~-~dl~~ll~~h~~~~ad~tv~~~~ 250 (527)
..++++... .+..++++.++..++ ..+.++++.||. +.. ..+..+++.+.+.++ .+.+.+
T Consensus 73 ~~~~~v~~g-----------~~r~~sv~~gl~~~~-----~~d~vli~~~d~P~i~~~~i~~li~~~~~~~~--~~~~~~ 134 (230)
T PRK13385 73 QRVEVVKGG-----------TERQESVAAGLDRIG-----NEDVILVHDGARPFLTQDIIDRLLEGVAKYGA--AICAVE 134 (230)
T ss_pred CceEEcCCC-----------chHHHHHHHHHHhcc-----CCCeEEEccCCCCCCCHHHHHHHHHHHhhCCc--EEEEEe
Confidence 124444211 134588888887664 235678889998 334 447888888766544 333333
Q ss_pred cCCCCCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCCCCC
Q 009720 251 VGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSN 330 (527)
Q Consensus 251 ~~~~~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~~~~ 330 (527)
+.+ .+... ++|.+....++ .. .+..-+.|.|+.+.|.+..+.... ..
T Consensus 135 ~~d------ti~~~-~~~~~~~~i~r---~~----------------------~~~~qtpq~f~~~~l~~~~~~~~~-~~ 181 (230)
T PRK13385 135 VKD------TVKRV-KDKQVIETVDR---NE----------------------LWQGQTPQAFELKILQKAHRLASE-QQ 181 (230)
T ss_pred ccc------eEEEE-cCCeeEeccCH---HH----------------------HhhhcCCceeeHHHHHHHHHHHHh-cC
Confidence 332 12222 33544333221 11 222335799999888776653221 22
Q ss_pred chhhhhHHhhhh-cCceEEEEecceEEecCCHHHHHHHHHHhhc
Q 009720 331 DFGSEIIPAAIM-EHDVQAYIFRDYWEDIGTIKSFYEANMALTK 373 (527)
Q Consensus 331 d~~~dii~~li~-~~~V~~~~~~g~w~dIgt~~d~~~An~~ll~ 373 (527)
.+.++....+.. ..+|..+.-+.....|+|++|+..|...+..
T Consensus 182 ~~~td~~~~~~~~g~~v~~v~~~~~n~kItt~eDl~~a~~~l~~ 225 (230)
T PRK13385 182 FLGTDEASLVERSPHPVKLVQGSYYNIKLTTPEDMPLAKAILQG 225 (230)
T ss_pred CCcCcHHHHHHHcCCCEEEEECCcccCcCCCHHHHHHHHHHHhh
Confidence 233443333332 3677777777778999999999999876643
No 76
>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]
Probab=99.45 E-value=2.8e-12 Score=118.18 Aligned_cols=110 Identities=23% Similarity=0.349 Sum_probs=85.5
Q ss_pred eEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCcccCCCe
Q 009720 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (527)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~~ 174 (527)
|.+||+|||+||||.- .-|||++++|+ |||+|+++.+.+ .+++|++++..+.....+|+.+. +
T Consensus 1 m~~iiMAGGrGtRmg~----~EKPlleV~Gk-pLI~~v~~al~~-~~d~i~v~isp~tp~t~~~~~~~--------g--- 63 (177)
T COG2266 1 MMAIIMAGGRGTRMGR----PEKPLLEVCGK-PLIDRVLEALRK-IVDEIIVAISPHTPKTKEYLESV--------G--- 63 (177)
T ss_pred CceEEecCCcccccCC----CcCcchhhCCc-cHHHHHHHHHHh-hcCcEEEEeCCCCHhHHHHHHhc--------C---
Confidence 5699999999999972 45999999999 999999999988 78999999999988888888632 2
Q ss_pred EEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceee-cC-CHHHHHHHHH
Q 009720 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY-RM-DYMDFIQSHV 238 (527)
Q Consensus 175 V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~-~~-dl~~ll~~h~ 238 (527)
++++. +++ .|--.-++.+++.+. .++|++++|+.+ +. .+..+++.+.
T Consensus 64 v~vi~---tpG-------~GYv~Dl~~al~~l~-------~P~lvvsaDLp~l~~~~i~~vi~~~~ 112 (177)
T COG2266 64 VKVIE---TPG-------EGYVEDLRFALESLG-------TPILVVSADLPFLNPSIIDSVIDAAA 112 (177)
T ss_pred ceEEE---cCC-------CChHHHHHHHHHhcC-------CceEEEecccccCCHHHHHHHHHHHh
Confidence 56664 232 266667777776664 599999999966 33 3566666554
No 77
>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.44 E-value=1e-12 Score=123.70 Aligned_cols=120 Identities=18% Similarity=0.327 Sum_probs=89.1
Q ss_pred eEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCcccCCCe
Q 009720 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (527)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~~ 174 (527)
+.+||||||.|+||++ ||+|+|++|+ |||+|+++++.+.++++|+|+++++...+.+++. .++
T Consensus 1 ~~~vIlAgG~s~R~g~-----~K~l~~~~g~-~li~~~i~~l~~~~~~~i~vv~~~~~~~~~~~~~--------~~~--- 63 (186)
T cd04182 1 IAAIILAAGRSSRMGG-----NKLLLPLDGK-PLLRHALDAALAAGLSRVIVVLGAEADAVRAALA--------GLP--- 63 (186)
T ss_pred CeEEEECCCCCCCCCC-----CceeCeeCCe-eHHHHHHHHHHhCCCCcEEEECCCcHHHHHHHhc--------CCC---
Confidence 4689999999999975 9999999999 9999999999999999999999886554433221 112
Q ss_pred EEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCcee-e-cCCHHHHHHHHHHcCCc
Q 009720 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHL-Y-RMDYMDFIQSHVDRDAD 243 (527)
Q Consensus 175 V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l-~-~~dl~~ll~~h~~~~ad 243 (527)
+.++.... +..|++++++.++..+.. ..+.++++.||+- . ...+..+++.+.+.+++
T Consensus 64 ~~~~~~~~--------~~~G~~~~i~~al~~~~~----~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~ 122 (186)
T cd04182 64 VVVVINPD--------WEEGMSSSLAAGLEALPA----DADAVLILLADQPLVTAETLRALIDAFREDGAG 122 (186)
T ss_pred eEEEeCCC--------hhhCHHHHHHHHHHhccc----cCCEEEEEeCCCCCCCHHHHHHHHHHHHhCCCe
Confidence 33333221 125999999999877641 3478999999993 3 45578888877654443
No 78
>cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide. The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target.
Probab=99.43 E-value=2.8e-12 Score=120.95 Aligned_cols=107 Identities=12% Similarity=0.185 Sum_probs=81.3
Q ss_pred eEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCcccCCCe
Q 009720 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (527)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~~ 174 (527)
+.+||||||.|+||++ ||+|+|++|+ |||+|+++.+... +++|+|++++..+. . .. ++
T Consensus 1 ~~~iILAgG~s~Rmg~-----~K~ll~~~g~-~ll~~~i~~l~~~-~~~iivv~~~~~~~----~-~~-------~~--- 58 (181)
T cd02503 1 ITGVILAGGKSRRMGG-----DKALLELGGK-PLLEHVLERLKPL-VDEVVISANRDQER----Y-AL-------LG--- 58 (181)
T ss_pred CcEEEECCCccccCCC-----CceeeEECCE-EHHHHHHHHHHhh-cCEEEEECCCChHH----H-hh-------cC---
Confidence 4689999999999973 9999999999 9999999999988 89999999886543 1 11 11
Q ss_pred EEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceee-c-CCHHHHHHHH
Q 009720 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY-R-MDYMDFIQSH 237 (527)
Q Consensus 175 V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~-~-~dl~~ll~~h 237 (527)
++++.... |..|+.++|+.++..++ .+.++++.||+-+ . ..+..+++.+
T Consensus 59 ~~~v~~~~--------~~~G~~~si~~~l~~~~------~~~vlv~~~D~P~i~~~~i~~l~~~~ 109 (181)
T cd02503 59 VPVIPDEP--------PGKGPLAGILAALRAAP------ADWVLVLACDMPFLPPELLERLLAAA 109 (181)
T ss_pred CcEeeCCC--------CCCCCHHHHHHHHHhcC------CCeEEEEeCCcCCCCHHHHHHHHHhh
Confidence 33443221 23589999999987664 4789999999943 4 3467777765
No 79
>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains. Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.42 E-value=1.6e-12 Score=121.20 Aligned_cols=121 Identities=15% Similarity=0.283 Sum_probs=91.1
Q ss_pred CCCCCccCCCeeee-ceee-eeeEECCCCEEcc-eeEe-ecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCc
Q 009720 387 FYTSPRFLPPTKID-NCRI-KDAIISHGCFLRE-CTVE-HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGK 462 (527)
Q Consensus 387 i~~~~~~~~p~~i~-~~~i-~~s~I~~g~~I~~-~~i~-~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~ 462 (527)
+.....+.+.+.|. ++.| .+++|+++|.|++ +.|. +++||++|.|+++++|.+++++.+
T Consensus 14 i~~~v~ig~~~~I~~~a~i~~~v~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~siig~~----------------- 76 (163)
T cd05636 14 IKGPVWIGEGAIVRSGAYIEGPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVKNSIIMDG----------------- 76 (163)
T ss_pred ECCCeEEcCCCEECCCCEEeCCeEECCCCEECCCCEEcCCCEECCCCEECCCcEEeeeEecCC-----------------
Confidence 33333344444453 2444 2588899999974 6775 699999999999999999888776
Q ss_pred cceEeCCCcEEeeeEEcCCCEECCCcEEeCC------------------------CCcCCCccCCCceEEecCeEEEccC
Q 009720 463 VPIGVGRNTKIRNCIIDKNVKIGKDVVIVNK------------------------DDVQEADRPELGFYIRSGITIIMEK 518 (527)
Q Consensus 463 ~~~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~------------------------~~v~~~~~~~~~~~i~~g~~vi~~~ 518 (527)
+.|++++.+.+|+|+++++|++++.+.+. ..++++++++.++.|..| ++|+++
T Consensus 77 --~~I~~~~~i~~siIg~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIg~~~~ig~~~~i~~g-~~ig~~ 153 (163)
T cd05636 77 --TKVPHLNYVGDSVLGENVNLGAGTITANLRFDDKPVKVRLKGERVDTGRRKLGAIIGDGVKTGINVSLNPG-VKIGPG 153 (163)
T ss_pred --CEeccCCEEecCEECCCCEECCCcEEcccCcCCcceEEEecCcceecCCcccCcEEcCCeEECCCcEECCC-cEECCC
Confidence 89999999999999999999999999762 234455566666666666 456888
Q ss_pred CEeCCCccC
Q 009720 519 ATIEDGMVI 527 (527)
Q Consensus 519 ~~I~~g~vi 527 (527)
++|++|++|
T Consensus 154 ~~i~agsvV 162 (163)
T cd05636 154 SWVYPGCVV 162 (163)
T ss_pred CEECCCcEe
Confidence 888888875
No 80
>PLN02728 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
Probab=99.41 E-value=2.3e-11 Score=121.32 Aligned_cols=224 Identities=13% Similarity=0.081 Sum_probs=135.3
Q ss_pred cCCCCCCceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHc-CCCEEEEEeccCchhHHHHHHHhhcc
Q 009720 87 RRRVDPKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINS-GINKIFVLTQFNSASLNRHIARTYFG 165 (527)
Q Consensus 87 ~~~~~~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~-Gi~~I~Iv~~~~~~~i~~hl~~~y~~ 165 (527)
+.++.++.+.+||||||.|+||+ ...||+|++++|+ |||+|+++.+.+. ++++|+|++++......+.+.+.+
T Consensus 17 ~~~~~~~~i~aIILAAG~gsRmg---~~~pKqll~l~Gk-pll~~tl~~~~~~~~i~~IvVV~~~~~~~~~~~~~~~~-- 90 (252)
T PLN02728 17 SAVVKEKSVSVILLAGGVGKRMG---ANMPKQYLPLLGQ-PIALYSLYTFARMPEVKEIVVVCDPSYRDVFEEAVENI-- 90 (252)
T ss_pred ccccccCceEEEEEcccccccCC---CCCCcceeEECCe-EHHHHHHHHHHhCCCCCeEEEEeCHHHHHHHHHHHHhc--
Confidence 34556777899999999999996 3479999999999 9999999999985 899999999876433332221211
Q ss_pred CCcccCCCeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce---eecC-CHHHHHHHHHHcC
Q 009720 166 NGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH---LYRM-DYMDFIQSHVDRD 241 (527)
Q Consensus 166 ~~~~~~~~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~---l~~~-dl~~ll~~h~~~~ 241 (527)
+ ..+.++. .. .+..++|+.++..++. +..+|+.+|. +... .+..+++...+.+
T Consensus 91 -----~-~~i~~v~--gg---------~~r~~SV~~gl~~l~~------~~~~VlihDaarP~vs~~~i~~li~~~~~~g 147 (252)
T PLN02728 91 -----D-VPLKFAL--PG---------KERQDSVFNGLQEVDA------NSELVCIHDSARPLVTSADIEKVLKDAAVHG 147 (252)
T ss_pred -----C-CceEEcC--CC---------CchHHHHHHHHHhccC------CCCEEEEecCcCCCCCHHHHHHHHHHHhhCC
Confidence 1 1133321 11 1446779888876641 3446677773 3333 3678888776655
Q ss_pred CcEEEEEEEcCCCCCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHH
Q 009720 242 ADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKL 321 (527)
Q Consensus 242 ad~tv~~~~~~~~~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~l 321 (527)
+ .+.+.++.+ .+...++++.|.. .+....+...+. --.|+.+.|.+.
T Consensus 148 a--~i~~~~~~d------tik~v~~~~~v~~---t~~R~~l~~~QT----------------------PQ~F~~~~l~~a 194 (252)
T PLN02728 148 A--AVLGVPVKA------TIKEANSDSFVVK---TLDRKRLWEMQT----------------------PQVIKPELLRRG 194 (252)
T ss_pred e--EEEeecchh------hEEEecCCCceee---ccChHHeEEEeC----------------------CccchHHHHHHH
Confidence 4 455555443 2333455554433 233222221111 245677777665
Q ss_pred HHhhCCCCCchhhhhHHhhhh-cCceEEEEecceEEecCCHHHHHHHHHHhhc
Q 009720 322 LRWRYPTSNDFGSEIIPAAIM-EHDVQAYIFRDYWEDIGTIKSFYEANMALTK 373 (527)
Q Consensus 322 l~~~~~~~~d~~~dii~~li~-~~~V~~~~~~g~w~dIgt~~d~~~An~~ll~ 373 (527)
.+...... .+.+|-...+.. ..+|....-+..-.-|.||+|+..|...+.+
T Consensus 195 ~~~~~~~~-~~~TDd~~~~~~~g~~V~~v~g~~~N~KITtpeDl~~a~~~l~~ 246 (252)
T PLN02728 195 FELVEREG-LEVTDDVSIVEALKHPVFITEGSYTNIKVTTPDDMLVAERILNE 246 (252)
T ss_pred HHHHHhcC-CCcCcHHHHHHHcCCceEEEecCcccccCCCHHHHHHHHHHHhh
Confidence 55433222 123443333222 2556665544456789999999999876643
No 81
>PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed
Probab=99.41 E-value=1.1e-11 Score=118.43 Aligned_cols=114 Identities=18% Similarity=0.176 Sum_probs=81.6
Q ss_pred CCceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCcccC
Q 009720 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFG 171 (527)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~ 171 (527)
|.+|.+||||||.|+||+ ..||+++|++|+ |||+|+++.+. .++++|+|+++...+.+ . . ++
T Consensus 1 ~~~~~~vILA~G~s~Rm~----~~~K~ll~~~g~-~ll~~~i~~l~-~~~~~i~vv~~~~~~~~----~-~-------~~ 62 (193)
T PRK00317 1 MPPITGVILAGGRSRRMG----GVDKGLQELNGK-PLIQHVIERLA-PQVDEIVINANRNLARY----A-A-------FG 62 (193)
T ss_pred CCCceEEEEcCCCcccCC----CCCCceeEECCE-EHHHHHHHHHh-hhCCEEEEECCCChHHH----H-h-------cC
Confidence 456899999999999995 279999999999 99999999998 78999999987543211 1 1 11
Q ss_pred CCeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-eecC-CHHHHHHHHHH
Q 009720 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYRM-DYMDFIQSHVD 239 (527)
Q Consensus 172 ~~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~-l~~~-dl~~ll~~h~~ 239 (527)
+.++..... +..|+..+|+.++...+ .+.++++.||+ +... .+..+++.+.+
T Consensus 63 ---~~~v~~~~~-------~~~g~~~~i~~~l~~~~------~~~vlv~~~D~P~i~~~~i~~l~~~~~~ 116 (193)
T PRK00317 63 ---LPVIPDSLA-------DFPGPLAGILAGLKQAR------TEWVLVVPCDTPFIPPDLVARLAQAAGK 116 (193)
T ss_pred ---CcEEeCCCC-------CCCCCHHHHHHHHHhcC------CCeEEEEcCCcCCCCHHHHHHHHHhhhc
Confidence 233322111 12588899988876542 47899999999 4443 46777776543
No 82
>COG2068 Uncharacterized MobA-related protein [General function prediction only]
Probab=99.35 E-value=5.6e-11 Score=112.48 Aligned_cols=122 Identities=18% Similarity=0.312 Sum_probs=94.2
Q ss_pred CCCceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCccc
Q 009720 91 DPKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNF 170 (527)
Q Consensus 91 ~~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~ 170 (527)
.+..+.+||||||+|+||+ .+|.|+|+.|+ ||++++++.+.+++.+++++++++...+.. ..+..
T Consensus 2 ~~~~v~~VvLAAGrssRmG-----~~KlLap~~g~-plv~~~~~~a~~a~~~~vivV~g~~~~~~~----~a~~~----- 66 (199)
T COG2068 2 RPSTVAAVVLAAGRSSRMG-----QPKLLAPLDGK-PLVRASAETALSAGLDRVIVVTGHRVAEAV----EALLA----- 66 (199)
T ss_pred CCcceEEEEEcccccccCC-----CcceecccCCC-cHHHHHHHHHHhcCCCeEEEEeCcchhhHH----Hhhhc-----
Confidence 4567899999999999998 89999999999 999999999999999999999999722221 11211
Q ss_pred CCCeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce--eecCCHHHHHHHHHHc
Q 009720 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDR 240 (527)
Q Consensus 171 ~~~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~--l~~~dl~~ll~~h~~~ 240 (527)
...++++...+ |.+|.+.+++.+...+.. ..+.++++.||+ +...++..+++.+..+
T Consensus 67 -~~~~~~v~npd--------~~~Gls~Sl~ag~~a~~~----~~~~v~~~lgDmP~V~~~t~~rl~~~~~~~ 125 (199)
T COG2068 67 -QLGVTVVVNPD--------YAQGLSTSLKAGLRAADA----EGDGVVLMLGDMPQVTPATVRRLIAAFRAR 125 (199)
T ss_pred -cCCeEEEeCcc--------hhhhHhHHHHHHHHhccc----CCCeEEEEeCCCCCCCHHHHHHHHHhcccc
Confidence 12356665443 558999999999877752 125899999998 4456788888877655
No 83
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=99.34 E-value=9.1e-11 Score=112.01 Aligned_cols=235 Identities=15% Similarity=0.219 Sum_probs=164.0
Q ss_pred ceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCcccCCC
Q 009720 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (527)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~ 173 (527)
+..+||+|-=..||| --|||-.|+|+ |||.|+.+++.++|.++++|.|.. +++.+++. . ||.
T Consensus 3 ~~~viIPAR~~STRL------pgKPLadI~Gk-pmI~rV~e~a~~s~~~rvvVATDd--e~I~~av~-~-------~G~- 64 (247)
T COG1212 3 KFVVIIPARLASTRL------PGKPLADIGGK-PMIVRVAERALKSGADRVVVATDD--ERIAEAVQ-A-------FGG- 64 (247)
T ss_pred ceEEEEecchhcccC------CCCchhhhCCc-hHHHHHHHHHHHcCCCeEEEEcCC--HHHHHHHH-H-------hCC-
Confidence 346899999899999 45999999999 999999999999999999999954 67777774 2 331
Q ss_pred eEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceee--cCCHHHHHHHHHHcCCcEEEEEEEc
Q 009720 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY--RMDYMDFIQSHVDRDADITISCAAV 251 (527)
Q Consensus 174 ~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~--~~dl~~ll~~h~~~~ad~tv~~~~~ 251 (527)
.+-+...+-. .|| +-+..+...+. ..+.+-++-+-||.=+ ...+..+++...+.++++.-++.+.
T Consensus 65 ~avmT~~~h~---------SGT-dR~~Ev~~~l~---~~~~~iIVNvQGDeP~i~p~~I~~~~~~L~~~~~~~aTl~~~i 131 (247)
T COG1212 65 EAVMTSKDHQ---------SGT-DRLAEVVEKLG---LPDDEIIVNVQGDEPFIEPEVIRAVAENLENSNADMATLAVKI 131 (247)
T ss_pred EEEecCCCCC---------Ccc-HHHHHHHHhcC---CCcceEEEEccCCCCCCCHHHHHHHHHHHHhCCcceeeeeeec
Confidence 1222222211 376 56666655543 2344667777899843 3447888888777788887777776
Q ss_pred CCCC---CCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCCC
Q 009720 252 GESR---ASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT 328 (527)
Q Consensus 252 ~~~~---~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~~ 328 (527)
.+++ ..+-..|.+|.+|+-+.|...|-+...+. . ...+.+...|+|.|++++|.++..+....
T Consensus 132 ~~~ee~~nPN~VKvV~d~~g~ALYFSRs~iP~~rd~-~-------------~~~p~l~HIGIYayr~~~L~~f~~~~ps~ 197 (247)
T COG1212 132 TDEEEAFNPNVVKVVLDKEGYALYFSRAPIPYGRDN-F-------------GGTPFLRHIGIYAYRAGFLERFVALKPSP 197 (247)
T ss_pred CCHHHhcCCCcEEEEEcCCCcEEEEEcCCCCCcccc-c-------------CCcchhheeehHHhHHHHHHHHHhcCCch
Confidence 6532 13456677899999999998876543211 0 01357889999999999999887765322
Q ss_pred CCchh-hhhHHhhhhcCceEEEEecceE-EecCCHHHHHHHHHHhhc
Q 009720 329 SNDFG-SEIIPAAIMEHDVQAYIFRDYW-EDIGTIKSFYEANMALTK 373 (527)
Q Consensus 329 ~~d~~-~dii~~li~~~~V~~~~~~g~w-~dIgt~~d~~~An~~ll~ 373 (527)
-...+ -|-|+.+-...+|.+...+..- ..++|++|+.++...+.+
T Consensus 198 LE~~E~LEQLR~Le~G~kI~v~i~~~~p~~gVDT~EDLe~v~~~~~~ 244 (247)
T COG1212 198 LEKIESLEQLRVLENGEKIHVEIVKEVPSIGVDTPEDLERVRKILSN 244 (247)
T ss_pred hHHHHHHHHHHHHHcCCeeEEEEeccCCCCCCCCHHHHHHHHHHHHh
Confidence 11111 1234444456899999988665 899999999999887754
No 84
>TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial. In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family.
Probab=99.34 E-value=3e-11 Score=114.46 Aligned_cols=117 Identities=17% Similarity=0.200 Sum_probs=82.4
Q ss_pred eEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCcccCCCe
Q 009720 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (527)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~~ 174 (527)
+.+||||||.|+||+ ..||+|+|++|+ |||+|+++++.. ++++|+|++++..+. +.. . .++
T Consensus 1 ~~~iILAgG~s~Rmg----~~~K~l~~i~g~-pll~~~l~~l~~-~~~~ivv~~~~~~~~---~~~-----~--~~~--- 61 (186)
T TIGR02665 1 ISGVILAGGRARRMG----GRDKGLVELGGK-PLIEHVLARLRP-QVSDLAISANRNPER---YAQ-----A--GFG--- 61 (186)
T ss_pred CeEEEEcCCccccCC----CCCCceeEECCE-EHHHHHHHHHHh-hCCEEEEEcCCCHHH---Hhh-----c--cCC---
Confidence 468999999999996 259999999999 999999999975 599999998754321 111 0 111
Q ss_pred EEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-eecCC-HHHHHHHHHHcCCc
Q 009720 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYRMD-YMDFIQSHVDRDAD 243 (527)
Q Consensus 175 V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~-l~~~d-l~~ll~~h~~~~ad 243 (527)
+.++..... +..|+.++|+.++..++ .+.++++.||+ +...+ +..+++...+.+++
T Consensus 62 ~~~i~~~~~-------~~~g~~~si~~al~~~~------~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~ 119 (186)
T TIGR02665 62 LPVVPDALA-------DFPGPLAGILAGLRWAG------TDWVLTVPCDTPFLPEDLVARLAAALEASDAD 119 (186)
T ss_pred CcEEecCCC-------CCCCCHHHHHHHHHhcC------CCeEEEEecCCCcCCHHHHHHHHHHhhccCCc
Confidence 333332211 23699999999987764 47899999998 44544 56777665443333
No 85
>TIGR03584 PseF pseudaminic acid CMP-transferase. The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci.
Probab=99.31 E-value=2.5e-10 Score=111.91 Aligned_cols=214 Identities=16% Similarity=0.227 Sum_probs=140.9
Q ss_pred EEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcC-CCEEEEEeccCchhHHHHHHHhhccCCcccCCCeE
Q 009720 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSG-INKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFV 175 (527)
Q Consensus 97 aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~G-i~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~~V 175 (527)
|||+|+|.++||. .|.+.|++|+ |||.|+++.+.+++ +++|+|.+. .+++.+.. +.| +. .+
T Consensus 2 aiIpArG~Skr~~------~Knl~~l~Gk-pLi~~ti~~a~~s~~~d~IvVstd--~~~i~~~a-~~~-------g~-~v 63 (222)
T TIGR03584 2 AIIPARGGSKRIP------RKNIKPFCGK-PMIAYSIEAALNSGLFDKVVVSTD--DEEIAEVA-KSY-------GA-SV 63 (222)
T ss_pred EEEccCCCCCCCC------CccchhcCCc-CHHHHHHHHHHhCCCCCEEEEeCC--CHHHHHHH-HHc-------CC-Ee
Confidence 7999999999993 5999999999 99999999999986 688877664 34554433 232 21 12
Q ss_pred EEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceee--cCCHHHHHHHHHHcCCcEEEEEEEcCC
Q 009720 176 EVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY--RMDYMDFIQSHVDRDADITISCAAVGE 253 (527)
Q Consensus 176 ~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~--~~dl~~ll~~h~~~~ad~tv~~~~~~~ 253 (527)
.+..+.... .+..|+.++++.++..++.. ...+.++++.+|.-+ ..++..+++.+.+.++|..+.+.+...
T Consensus 64 ~~~r~~~l~-----~d~~~~~~si~~~l~~l~~~--~~~d~v~~l~~tsPl~~~~~I~~~i~~~~~~~~ds~~sv~~~~~ 136 (222)
T TIGR03584 64 PFLRPKELA-----DDFTGTAPVVKHAIEELKLQ--KQYDHACCIYATAPFLQAKILKEAFELLKQPNAHFVFSVTSFAF 136 (222)
T ss_pred EEeChHHHc-----CCCCCchHHHHHHHHHHhhc--CCCCEEEEecCCCCcCCHHHHHHHHHHHHhCCCCEEEEeeccCC
Confidence 222111110 11248889999998877521 234779999999854 357899999988877898888877543
Q ss_pred CCCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCCCCCchh
Q 009720 254 SRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFG 333 (527)
Q Consensus 254 ~~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~~~~d~~ 333 (527)
. + .+. ...+++|++..+........ .++ ....+..+.++|+++++.|.+ . . .+.
T Consensus 137 ~-~-~~~-~~~~~~g~~~~~~~~~~~~~--------------rQd-~~~~y~~nga~y~~~~~~~~~---~----~-~~~ 190 (222)
T TIGR03584 137 P-I-QRA-FKLKENGGVEMFFPEHFNTR--------------SQD-LEEAYHDAGQFYWGKSQAWLE---S----G-PIF 190 (222)
T ss_pred C-h-HHh-eEECCCCcEEecCCCcccCC--------------CCC-CchheeeCCeEEEEEHHHHHh---c----C-Ccc
Confidence 1 1 122 24456677665542211000 011 012366799999999998752 1 1 111
Q ss_pred hhhHHhhhhcCceEEEEecce-EEecCCHHHHHHHHHH
Q 009720 334 SEIIPAAIMEHDVQAYIFRDY-WEDIGTIKSFYEANMA 370 (527)
Q Consensus 334 ~dii~~li~~~~V~~~~~~g~-w~dIgt~~d~~~An~~ 370 (527)
..++..|..+.. -.||+|++||..|...
T Consensus 191 ---------~~~~~~~~m~~~~~iDID~~~D~~~ae~l 219 (222)
T TIGR03584 191 ---------SPHSIPIVLPRHLVQDIDTLEDWERAELL 219 (222)
T ss_pred ---------CCCcEEEEeCccceeCCCCHHHHHHHHHH
Confidence 356778887764 7899999999998654
No 86
>PRK00560 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=99.30 E-value=1.2e-10 Score=111.94 Aligned_cols=107 Identities=11% Similarity=0.263 Sum_probs=74.5
Q ss_pred CCCCCceEEEEEeCCCCCccccCccCCCccceeeCC-cchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCC
Q 009720 89 RVDPKNVAAIILGGGAGTKLFPLTLRAATPAVPVAG-CYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNG 167 (527)
Q Consensus 89 ~~~~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgG-k~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~ 167 (527)
++++.++.+||||||+|+||+ .+|+|+|++| + |||+|+++++... +++|+|++++ .. | .
T Consensus 3 ~~~~~~i~~vILAgG~s~RmG-----~~K~ll~~~g~~-~ll~~~i~~l~~~-~~~vvvv~~~--~~--------~-~-- 62 (196)
T PRK00560 3 NPMIDNIPCVILAGGKSSRMG-----ENKALLPFGSYS-SLLEYQYTRLLKL-FKKVYISTKD--KK--------F-E-- 62 (196)
T ss_pred CccccCceEEEECCcccccCC-----CCceEEEeCCCC-cHHHHHHHHHHHh-CCEEEEEECc--hh--------c-c--
Confidence 455677899999999999995 6899999999 9 9999999999876 8999999875 11 1 0
Q ss_pred cccCCCeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceee-cCC-HHHH
Q 009720 168 TNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY-RMD-YMDF 233 (527)
Q Consensus 168 ~~~~~~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~-~~d-l~~l 233 (527)
+. ++++...+.. ..|...++..++... ..+.++++.||+-+ ..+ +..+
T Consensus 63 --~~---~~~v~d~~~~-------~~gpl~gi~~~l~~~------~~~~vlv~~~D~P~i~~~~i~~l 112 (196)
T PRK00560 63 --FN---APFLLEKESD-------LFSPLFGIINAFLTL------QTPEIFFISVDTPFVSFESIKKL 112 (196)
T ss_pred --cC---CcEEecCCCC-------CCCcHHHHHHHHHhc------CCCeEEEEecCcCcCCHHHHHHH
Confidence 11 2333321111 136666666554333 24789999999944 444 3444
No 87
>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]
Probab=99.30 E-value=4.9e-11 Score=120.68 Aligned_cols=51 Identities=24% Similarity=0.289 Sum_probs=32.5
Q ss_pred eEEcCCCEECCCcEEeCCCCcCCCccCCCceEEecCeEEEccCCEeCCCccC
Q 009720 476 CIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 527 (527)
Q Consensus 476 ~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g~~vi~~~~~I~~g~vi 527 (527)
+-|++||+||++|.|.+..++.....+|.++.|.++ +-|..+..|+|+++|
T Consensus 237 vqIaHnv~IG~~~~I~~~vgIaGs~~IG~~v~igg~-vgI~gh~~IgD~~~I 287 (338)
T COG1044 237 VQIGHNVRIGEHCIIAGQVGIAGSVKIGKYVIIGGQ-VGIAGHLEIGDGVTI 287 (338)
T ss_pred eEEccccEECCCcEEeccceeeccceECCeEEECcc-eeecCceEEcCCCEE
Confidence 455566666666666666666666666666666554 444666777777654
No 88
>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase. It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.
Probab=99.30 E-value=1.5e-11 Score=117.74 Aligned_cols=132 Identities=23% Similarity=0.296 Sum_probs=81.7
Q ss_pred ccCCCeeee-ceeeeeeEECCCCEEcc-eeEeecEEcCCcEECCCCEEeeeEEeCCc-ccCchhhH-HhhhcCCccceEe
Q 009720 392 RFLPPTKID-NCRIKDAIISHGCFLRE-CTVEHSIVGERSRLDYGVELKDTVMLGAD-YYQTESEI-ASLLAEGKVPIGV 467 (527)
Q Consensus 392 ~~~~p~~i~-~~~i~~s~I~~g~~I~~-~~i~~svIg~~~~I~~~~~I~~~~i~~~~-~~~~~~~~-~~~~~~~~~~~~I 467 (527)
.+.+++.|. ++.|.++.|+++|.|++ +.+.+++||++++|++++.|.....++++ ......++ .+.+.++ +.|
T Consensus 35 ~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~I~~~~~Ig~~~~Ig~~~~i~~s~ig~~---~~i 111 (193)
T cd03353 35 VIGEDCVIGPNCVIKDSTIGDGVVIKASSVIEGAVIGNGATVGPFAHLRPGTVLGEGVHIGNFVEIKKSTIGEG---SKA 111 (193)
T ss_pred EECCCCEECCCcEEeCCEECCCCEEcCCeEEEeeEECCCCEECCccEEcCccEECCCCEECCcEEEecceEcCC---CEe
Confidence 333444442 25566677777777773 66677777777777777766543333321 11111111 2334445 566
Q ss_pred CCCcEEeeeEEcCCCEECCCcEEeCCCC-------cCCCccCCCceEEecCeEEEccCCEeCCCccC
Q 009720 468 GRNTKIRNCIIDKNVKIGKDVVIVNKDD-------VQEADRPELGFYIRSGITIIMEKATIEDGMVI 527 (527)
Q Consensus 468 g~~~~I~~~iI~~~~~Ig~~~~i~~~~~-------v~~~~~~~~~~~i~~g~~vi~~~~~I~~g~vi 527 (527)
++.++|.+|+||+++.||+++.+.+.++ +++..+++.++.+..| +.|++++.|++|++|
T Consensus 112 ~~~~~i~~~~Ig~~~~ig~~~~~~~~~~~~~~~~vigd~~~ig~~~~i~~~-~~Ig~~~~i~~gs~V 177 (193)
T cd03353 112 NHLSYLGDAEIGEGVNIGAGTITCNYDGVNKHRTVIGDNVFIGSNSQLVAP-VTIGDGATIAAGSTI 177 (193)
T ss_pred cccceecccEECCCCEEcCceEEeccCCccccCCEECCCeEEccCCEEeCC-cEECCCcEECCCCEE
Confidence 6667777899999999999998887543 4445555555555555 456999999998874
No 89
>PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=99.27 E-value=2.7e-10 Score=109.89 Aligned_cols=112 Identities=18% Similarity=0.207 Sum_probs=80.6
Q ss_pred CceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCcccCC
Q 009720 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGD 172 (527)
Q Consensus 93 ~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~ 172 (527)
.++.+||||||+|+||+ .+|+|+|++|+ |||+|+++.+... +++|+|++++. +.. ..+ ...
T Consensus 6 ~~~~~vILAgG~s~Rmg-----~~K~ll~~~g~-~ll~~~i~~l~~~-~~~ivvv~~~~-~~~-~~~----~~~------ 66 (200)
T PRK02726 6 NNLVALILAGGKSSRMG-----QDKALLPWQGV-PLLQRVARIAAAC-ADEVYIITPWP-ERY-QSL----LPP------ 66 (200)
T ss_pred CCceEEEEcCCCcccCC-----CCceeeEECCE-eHHHHHHHHHHhh-CCEEEEECCCH-HHH-Hhh----ccC------
Confidence 35789999999999996 47999999999 9999999999754 78999988642 111 111 111
Q ss_pred CeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceee-cC-CHHHHHHHHH
Q 009720 173 GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY-RM-DYMDFIQSHV 238 (527)
Q Consensus 173 ~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~-~~-dl~~ll~~h~ 238 (527)
.+.++.... |.+|..++++.++..++ .+.++++.||+-+ .. .+..+++.+.
T Consensus 67 -~~~~i~~~~--------~~~G~~~si~~~l~~~~------~~~vlv~~~D~P~i~~~~i~~l~~~~~ 119 (200)
T PRK02726 67 -GCHWLREPP--------PSQGPLVAFAQGLPQIK------TEWVLLLACDLPRLTVDVLQEWLQQLE 119 (200)
T ss_pred -CCeEecCCC--------CCCChHHHHHHHHHhCC------CCcEEEEeCCCCCCCHHHHHHHHHHhh
Confidence 144443322 23699999999987764 3789999999944 43 3677777653
No 90
>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase. This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).
Probab=99.27 E-value=7.4e-11 Score=121.93 Aligned_cols=45 Identities=11% Similarity=-0.056 Sum_probs=24.9
Q ss_pred EEecCCHHHHHHHHHHhhccCCC-CccCCCCCCCCCCCccCCCeee
Q 009720 355 WEDIGTIKSFYEANMALTKESPA-FHFYDPKTPFYTSPRFLPPTKI 399 (527)
Q Consensus 355 w~dIgt~~d~~~An~~ll~~~~~-~~~~~~~~~i~~~~~~~~p~~i 399 (527)
+.-+++|...+..-..++.+.++ ...++|.+.+.+++.+.+.+.|
T Consensus 67 ~~~v~~p~~~~~~~~~~~~~~~~~~~~i~p~a~i~~~a~Ig~~v~I 112 (324)
T TIGR01853 67 ALVVKDPYLAFAKVAELFDPPPKREAGIHPTAVVDPSAKIGDGVTI 112 (324)
T ss_pred EEEECCHHHHHHHHHHHhcccccccCCcCCCCEeCCCcEECCCCEE
Confidence 55678888776655666544332 2345555555555544444444
No 91
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=99.23 E-value=2.9e-10 Score=119.58 Aligned_cols=121 Identities=16% Similarity=0.185 Sum_probs=84.4
Q ss_pred CCCceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCccc
Q 009720 91 DPKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNF 170 (527)
Q Consensus 91 ~~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~ 170 (527)
.|+++.+||||||.|+||+ ..||+|+|++|+ |||+|+++.+.. .+++|+|++....+.+.++ +.+
T Consensus 2 ~~~~i~~VILAgG~s~Rmg----g~~K~ll~i~Gk-pll~~~i~~l~~-~~~~iivvv~~~~~~~~~~-----~~~---- 66 (366)
T PRK14489 2 QISQIAGVILAGGLSRRMN----GRDKALILLGGK-PLIERVVDRLRP-QFARIHLNINRDPARYQDL-----FPG---- 66 (366)
T ss_pred CCCCceEEEEcCCcccCCC----CCCCceeEECCe-eHHHHHHHHHHh-hCCEEEEEcCCCHHHHHhh-----ccC----
Confidence 3567899999999999995 379999999999 999999999975 4899999776544333221 111
Q ss_pred CCCeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-eecCC-HHHHHHHHHHcCCc
Q 009720 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYRMD-YMDFIQSHVDRDAD 243 (527)
Q Consensus 171 ~~~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~-l~~~d-l~~ll~~h~~~~ad 243 (527)
+.++...... +.|...+++.++..++ .+.++++.||+ +...+ +..+++.+.+.+++
T Consensus 67 ----~~~i~d~~~g-------~~G~~~si~~gl~~~~------~~~vlv~~~D~P~i~~~~i~~L~~~~~~~~~~ 124 (366)
T PRK14489 67 ----LPVYPDILPG-------FQGPLSGILAGLEHAD------SEYLFVVACDTPFLPENLVKRLSKALAIEGAD 124 (366)
T ss_pred ----CcEEecCCCC-------CCChHHHHHHHHHhcC------CCcEEEeeCCcCCCCHHHHHHHHHHhhccCCe
Confidence 1222222211 1488899999887653 36799999998 34444 57777765554554
No 92
>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.21 E-value=7.3e-11 Score=96.96 Aligned_cols=78 Identities=17% Similarity=0.438 Sum_probs=54.4
Q ss_pred ECCCCEEcc-eeEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCcEEeeeEEcCCCEECCC
Q 009720 409 ISHGCFLRE-CTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKD 487 (527)
Q Consensus 409 I~~g~~I~~-~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~iI~~~~~Ig~~ 487 (527)
|+++|.|++ +.|.+++||++|.|+++|+|++++++.. +.||+++.|.+|+|++++.|+++
T Consensus 2 ig~~~~I~~~~~i~~~~Ig~~~~I~~~~~i~~s~i~~~-------------------~~ig~~~~l~~svi~~~~~i~~~ 62 (81)
T cd04652 2 VGENTQVGEKTSIKRSVIGANCKIGKRVKITNCVIMDN-------------------VTIEDGCTLENCIIGNGAVIGEK 62 (81)
T ss_pred ccCCCEECCCCEEeCcEECCCCEECCCCEEeCcEEeCC-------------------CEECCCCEEeccEEeCCCEECCC
Confidence 455666653 4555677777777777777777776665 77777777777777777777777
Q ss_pred cEEeCCCCcCCCccCCCceEEecCeEEEccCCEeCCCc
Q 009720 488 VVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGM 525 (527)
Q Consensus 488 ~~i~~~~~v~~~~~~~~~~~i~~g~~vi~~~~~I~~g~ 525 (527)
+.+.+ ++|++++.|++++
T Consensus 63 ~~v~~--------------------~ii~~~~~i~~~~ 80 (81)
T cd04652 63 CKLKD--------------------CLVGSGYRVEAGT 80 (81)
T ss_pred CEEcc--------------------CEECCCcEeCCCC
Confidence 77754 5667777777664
No 93
>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase. This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132).
Probab=99.21 E-value=9.6e-11 Score=117.21 Aligned_cols=88 Identities=14% Similarity=0.176 Sum_probs=51.4
Q ss_pred ecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCcEE-------eeeEEcCCCEECCCcEEeCCC
Q 009720 422 HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKI-------RNCIIDKNVKIGKDVVIVNKD 494 (527)
Q Consensus 422 ~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I-------~~~iI~~~~~Ig~~~~i~~~~ 494 (527)
+++||++|.|+++|.|......+. -++.||++++| ++|.||+++.|+.++.|....
T Consensus 76 ~v~IG~~~~I~~~~~I~~~~~~~~-----------------~~~~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~~ 138 (254)
T TIGR01852 76 ELIIGDNNTIREFVTINRGTASGG-----------------GVTRIGNNNLLMAYSHIAHDCVVGNHVILANNATLAGHV 138 (254)
T ss_pred eEEECCCCEECCCCEECCcccCCC-----------------CcEEECCCCEECCCCEEccCCEECCCCEECCCCEECCCc
Confidence 355555555555555554433220 01556666555 456666666666666666655
Q ss_pred CcCCCccCCCceEEecCeEEEccCCEeCCCccC
Q 009720 495 DVQEADRPELGFYIRSGITIIMEKATIEDGMVI 527 (527)
Q Consensus 495 ~v~~~~~~~~~~~i~~g~~vi~~~~~I~~g~vi 527 (527)
.+++++.++.++.|..+ +.|+++++|+++++|
T Consensus 139 ~Igd~~~Ig~~~~i~~~-v~Ig~~~~Ig~~s~V 170 (254)
T TIGR01852 139 EVGDYAIIGGLVAVHQF-VRIGRYAMIGGLSAV 170 (254)
T ss_pred EECCCcEEeccCEECCC-cEECCCCEEeeeeeE
Confidence 56666666666666555 445788888777764
No 94
>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase. It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.
Probab=99.20 E-value=9.8e-11 Score=112.07 Aligned_cols=80 Identities=20% Similarity=0.370 Sum_probs=56.4
Q ss_pred cCCCeeeec-eee-eeeEECCCCEEcc-eeEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCC
Q 009720 393 FLPPTKIDN-CRI-KDAIISHGCFLRE-CTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGR 469 (527)
Q Consensus 393 ~~~p~~i~~-~~i-~~s~I~~g~~I~~-~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~ 469 (527)
+.+++.|++ +.| .++.||++|+|++ +.|.++.||++|+|++++.|+++++... +.||+
T Consensus 18 ig~~~~I~~~a~i~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~ig~~-------------------~~Ig~ 78 (193)
T cd03353 18 IGVDVVIDPGVILEGKTVIGEDCVIGPNCVIKDSTIGDGVVIKASSVIEGAVIGNG-------------------ATVGP 78 (193)
T ss_pred ECCCcEECCCCEEeCcCEECCCCEECCCcEEeCCEECCCCEEcCCeEEEeeEECCC-------------------CEECC
Confidence 344444432 334 2688999999984 8888899999999999999998877665 56666
Q ss_pred CcEEe-eeEEcCCCEECCCcEEe
Q 009720 470 NTKIR-NCIIDKNVKIGKDVVIV 491 (527)
Q Consensus 470 ~~~I~-~~iI~~~~~Ig~~~~i~ 491 (527)
+++|. +++|+++++|+.++.+.
T Consensus 79 ~~~I~~~~~Ig~~~~Ig~~~~i~ 101 (193)
T cd03353 79 FAHLRPGTVLGEGVHIGNFVEIK 101 (193)
T ss_pred ccEEcCccEECCCCEECCcEEEe
Confidence 66665 56666666655555554
No 95
>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc. It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.
Probab=99.20 E-value=9.4e-11 Score=117.26 Aligned_cols=62 Identities=15% Similarity=0.217 Sum_probs=35.1
Q ss_pred eEeCCCcEE-------eeeEEcCCCEECCCcEEeCCCCcCCCccCCCceEEecCeEEEccCCEeCCCccC
Q 009720 465 IGVGRNTKI-------RNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 527 (527)
Q Consensus 465 ~~Ig~~~~I-------~~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g~~vi~~~~~I~~g~vi 527 (527)
+.||+++.| ++|.||+++.|+.++.|.....+++++.++.++.|..+ +.||++++|+.+++|
T Consensus 103 ~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~~~i~~~-v~Ig~~~~Ig~~s~V 171 (254)
T cd03351 103 TRIGNNNLLMAYVHVAHDCVIGNNVILANNATLAGHVEIGDYAIIGGLSAVHQF-CRIGRHAMVGGGSGV 171 (254)
T ss_pred eEECCCCEECCCCEECCCCEECCCcEECCCccccCCcEeCCCcEECCcceECCC-cEECCCCEECcCCEE
Confidence 555555555 34555555555555555544445555555555555555 345888888777754
No 96
>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc. It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.
Probab=99.20 E-value=9.7e-11 Score=117.17 Aligned_cols=53 Identities=13% Similarity=0.217 Sum_probs=25.1
Q ss_pred CCCCCCccCCCeeeec-eee-eeeEECCCCEEcc-eeE-eecEEcCCcEECCCCEEe
Q 009720 386 PFYTSPRFLPPTKIDN-CRI-KDAIISHGCFLRE-CTV-EHSIVGERSRLDYGVELK 438 (527)
Q Consensus 386 ~i~~~~~~~~p~~i~~-~~i-~~s~I~~g~~I~~-~~i-~~svIg~~~~I~~~~~I~ 438 (527)
.+.+++.+.+++.|++ +.| .++.||++|.|++ +.| .++.||++|+|++++.|.
T Consensus 7 ~I~~~a~ig~~~~I~p~~~I~~~v~IG~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~ 63 (254)
T cd03351 7 IVDPGAKIGENVEIGPFCVIGPNVEIGDGTVIGSHVVIDGPTTIGKNNRIFPFASIG 63 (254)
T ss_pred EECCCCEECCCCEECCCcEECCCCEECCCCEECCCcEEeCCeEECCCCEEecceeec
Confidence 3333444444444432 223 2455666666653 333 235555555555555554
No 97
>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]
Probab=99.19 E-value=1.5e-10 Score=107.50 Aligned_cols=91 Identities=25% Similarity=0.485 Sum_probs=64.5
Q ss_pred CCccCCCeee-eceee-eeeEECCCCEEcceeEeecEEcCCcEECCCCEEeee----EEeCCcccCchhhHHhhhcCCcc
Q 009720 390 SPRFLPPTKI-DNCRI-KDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDT----VMLGADYYQTESEIASLLAEGKV 463 (527)
Q Consensus 390 ~~~~~~p~~i-~~~~i-~~s~I~~g~~I~~~~i~~svIg~~~~I~~~~~I~~~----~i~~~~~~~~~~~~~~~~~~~~~ 463 (527)
++-+.|.+.| .+++| .++.|+++++|+ +....-.||++|.|.+||+|+.. +.+|.+
T Consensus 17 ~a~Va~~A~viGdV~Ig~~vsIw~~aVlR-gD~~~I~IG~~tNIQDg~ViH~~~~~p~~IG~~----------------- 78 (176)
T COG0663 17 TAFVAPSATVIGDVRIGAGVSIWPGAVLR-GDVEPIRIGARTNIQDGVVIHADPGYPVTIGDD----------------- 78 (176)
T ss_pred ceEECCCCEEEEeEEECCCCEECCceEEE-ccCCceEECCCceecCCeEEecCCCCCeEECCC-----------------
Confidence 3333333333 33444 356666666666 33356789999999999988753 444444
Q ss_pred ceEeCCCcEEeeeEEcCCCEECCCcEEeCCCCcCCC
Q 009720 464 PIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEA 499 (527)
Q Consensus 464 ~~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~~~v~~~ 499 (527)
+.||+++.|+.|.|++++.||.|++|.|+..+++.
T Consensus 79 -vtIGH~aivHGc~Ig~~~lIGmgA~vldga~IG~~ 113 (176)
T COG0663 79 -VTIGHGAVVHGCTIGDNVLIGMGATVLDGAVIGDG 113 (176)
T ss_pred -cEEcCccEEEEeEECCCcEEecCceEeCCcEECCC
Confidence 99999999999999999999999999987544444
No 98
>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.19 E-value=1.9e-10 Score=114.99 Aligned_cols=62 Identities=16% Similarity=0.166 Sum_probs=40.7
Q ss_pred eEeCCCcEEe-eeEEcCCCEECCCcEEeCCCCcCCCccCCCceEEecCeE-----EEccCCEeCCCcc
Q 009720 465 IGVGRNTKIR-NCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGIT-----IIMEKATIEDGMV 526 (527)
Q Consensus 465 ~~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g~~-----vi~~~~~I~~g~v 526 (527)
+.||+++.|. ++.|++++.||.+|+|.+...+....+++++++|..+.. .||+++.|+.|++
T Consensus 102 t~IG~~~~i~~~~~I~hd~~IG~~v~i~~~~~i~g~v~Igd~a~Ig~~a~V~~~~~IG~~a~Vg~gs~ 169 (255)
T PRK12461 102 TRIGNDNLLMAYSHVAHDCQIGNNVILVNGALLAGHVTVGDRAIISGNCLVHQFCRIGALAMMAGGSR 169 (255)
T ss_pred EEEcccceeccCcEECCCCEECCCcEECCCCccCCceEECCCeEEeCCCEECCCCEECCCcEECCCce
Confidence 5666666653 566777777777777777777777777777777766632 2455555555554
No 99
>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional
Probab=99.19 E-value=2.6e-10 Score=119.00 Aligned_cols=51 Identities=22% Similarity=0.185 Sum_probs=28.0
Q ss_pred eEEcCCCEECCCcEEeCCCCcCCCccCCCceEEecCeEE-----EccCCEeCCCcc
Q 009720 476 CIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITI-----IMEKATIEDGMV 526 (527)
Q Consensus 476 ~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g~~v-----i~~~~~I~~g~v 526 (527)
+.|++|++||+++.|....++....++++++.|..+..+ ||+++.|+.+++
T Consensus 238 v~I~~~~~IG~~~~i~~~~~i~~~~~iG~~~~ig~~~~i~~~~~ig~~~~i~~~s~ 293 (343)
T PRK00892 238 VQIAHNVVIGRHTAIAAQVGIAGSTKIGRYCMIGGQVGIAGHLEIGDGVTITAMSG 293 (343)
T ss_pred eEEccCCEECCCcEEeeeeeecCCCEECCceEECCCCEEcCCCEECCCCEEecCCe
Confidence 445555556666666555555555666666666555332 455555555543
No 100
>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.19 E-value=1.1e-10 Score=117.36 Aligned_cols=63 Identities=13% Similarity=0.087 Sum_probs=32.1
Q ss_pred eEeCCCcEEe-eeEEcCCCEECCCcEEeCCCCcCCCccCCCceEEecCe-----EEEccCCEeCCCccC
Q 009720 465 IGVGRNTKIR-NCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGI-----TIIMEKATIEDGMVI 527 (527)
Q Consensus 465 ~~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g~-----~vi~~~~~I~~g~vi 527 (527)
+.||+++.|. ++.|+.++.||.++.|.+...+..+..++++++|..+. +.||+++.|++|++|
T Consensus 106 t~IG~~~~I~~~~~I~h~~~IG~~v~i~~~~~i~g~v~Igd~~~Ig~~~~i~~~v~Ig~~~~Ig~gs~V 174 (262)
T PRK05289 106 TRIGDNNLLMAYVHVAHDCVVGNHVILANNATLAGHVEVGDYAIIGGLTAVHQFVRIGAHAMVGGMSGV 174 (262)
T ss_pred eEECCceEECCCCEECCeEEECCCeEECCccccccccccCCcEEEeecceecCCCEECCCCEEeeecce
Confidence 4555555552 33344444444444444444444444444444444332 335777777777764
No 101
>PF01128 IspD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; InterPro: IPR001228 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, a bacterial ispD protein, catalyzes the third step of the deoxyxylulose-5-phosphate pathway (DXP) of isoprenoid biosynthesis; the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate []. The isoprenoid pathway is a well known target for anti-infective drug development [, ].; GO: 0003824 catalytic activity, 0008299 isoprenoid biosynthetic process; PDB: 1VGW_F 1VGZ_A 1W77_A 2YC3_A 2YCM_A 2YC5_A 1VGU_A 3N9W_B 1I52_A 1H3M_B ....
Probab=99.18 E-value=2.4e-09 Score=104.70 Aligned_cols=214 Identities=15% Similarity=0.167 Sum_probs=121.9
Q ss_pred eEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHc-CCCEEEEEeccCchhHHHHHHHhhccCCcccCCC
Q 009720 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINS-GINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (527)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~-Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~ 173 (527)
+.+||||||.|+||+ ...||++++++|+ |+|.|+++.+.+. .+++|+|++.....+..+.+... .
T Consensus 1 V~aIilAaG~G~R~g---~~~pKQf~~l~Gk-pvl~~tl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~~----------~ 66 (221)
T PF01128_consen 1 VAAIILAAGSGSRMG---SGIPKQFLELGGK-PVLEYTLEAFLASPEIDEIVVVVPPEDIDYVEELLSK----------K 66 (221)
T ss_dssp EEEEEEESS-STCCT---SSS-GGGSEETTE-EHHHHHHHHHHTTTTESEEEEEESGGGHHHHHHHHHH----------T
T ss_pred CEEEEeCCccchhcC---cCCCCeeeEECCe-EeHHHHHHHHhcCCCCCeEEEEecchhHHHHHHhhcC----------C
Confidence 468999999999997 3689999999999 9999999999885 79999999976553322222211 1
Q ss_pred eEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-ee-cCCHHHHHHHHHHcCCcEEEEEEEc
Q 009720 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LY-RMDYMDFIQSHVDRDADITISCAAV 251 (527)
Q Consensus 174 ~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~-l~-~~dl~~ll~~h~~~~ad~tv~~~~~ 251 (527)
.+.++..-. .-.++++.++..+.+ ..+.+++=-|== +. ..-+.++++..++ +.+..+.+.++
T Consensus 67 ~v~iv~GG~-----------tR~~SV~ngL~~l~~----~~d~VlIHDaaRPfv~~~~i~~~i~~~~~-~~~aai~~~p~ 130 (221)
T PF01128_consen 67 KVKIVEGGA-----------TRQESVYNGLKALAE----DCDIVLIHDAARPFVSPELIDRVIEAARE-GHGAAIPALPV 130 (221)
T ss_dssp TEEEEE--S-----------SHHHHHHHHHHCHHC----TSSEEEEEETTSTT--HHHHHHHHHHHHH-TCSEEEEEEE-
T ss_pred CEEEecCCh-----------hHHHHHHHHHHHHHc----CCCEEEEEccccCCCCHHHHHHHHHHHHh-hcCcEEEEEec
Confidence 255554221 346889999888863 223333322210 22 2236777776654 24456666666
Q ss_pred CCCCCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCCCCCc
Q 009720 252 GESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSND 331 (527)
Q Consensus 252 ~~~~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~~~~d 331 (527)
.+ .+...|++|.+....+. ..+..+ =---.|+.+.|.+..++......+
T Consensus 131 ~D------Tik~v~~~~~v~~tldR---~~l~~~----------------------QTPQ~F~~~~l~~a~~~a~~~~~~ 179 (221)
T PF01128_consen 131 TD------TIKRVDDDGFVTETLDR---SKLWAV----------------------QTPQAFRFELLLEAYEKADEEGFE 179 (221)
T ss_dssp SS------EEEEESTTSBEEEEETG---GGEEEE----------------------EEEEEEEHHHHHHHHHTHHHHTHH
T ss_pred cc------cEEEEecCCcccccCCH---HHeeee----------------------cCCCeecHHHHHHHHHHHHhcCCC
Confidence 54 34566667777654432 111111 123578888887766554221112
Q ss_pred hhhhhHHhhhh--cCceEEEEecceEEecCCHHHHHHHHHHh
Q 009720 332 FGSEIIPAAIM--EHDVQAYIFRDYWEDIGTIKSFYEANMAL 371 (527)
Q Consensus 332 ~~~dii~~li~--~~~V~~~~~~g~w~dIgt~~d~~~An~~l 371 (527)
+ +|-- .++. ..+++...-+..-.-|.||+|+..|...+
T Consensus 180 ~-tDda-sl~~~~g~~v~~V~G~~~N~KIT~peDl~~ae~ll 219 (221)
T PF01128_consen 180 F-TDDA-SLVEAAGKKVAIVEGSPRNIKITTPEDLELAEALL 219 (221)
T ss_dssp H-SSHH-HHHHHTTS-EEEEE--TTG----SHHHHHHHHHHH
T ss_pred c-cCHH-HHHHHcCCCEEEEeCCCCceeECCHHHHHHHHHHh
Confidence 2 2211 1222 35565555444567899999999997655
No 102
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.17 E-value=6.7e-11 Score=128.88 Aligned_cols=67 Identities=16% Similarity=0.171 Sum_probs=40.9
Q ss_pred CCCCCCCccCCCeeee-ceeeeeeEECCCCEEcc-eeEeecEEcCCcEECCCCEEee-eEEeCCcccCch
Q 009720 385 TPFYTSPRFLPPTKID-NCRIKDAIISHGCFLRE-CTVEHSIVGERSRLDYGVELKD-TVMLGADYYQTE 451 (527)
Q Consensus 385 ~~i~~~~~~~~p~~i~-~~~i~~s~I~~g~~I~~-~~i~~svIg~~~~I~~~~~I~~-~~i~~~~~~~~~ 451 (527)
..|...+.+.+.+.|. .|.|.+|+|+++|.|++ +.|.+++||+++.|++++.|.. +++.++..++..
T Consensus 283 ~~I~~~v~Ig~~~~I~~~~~i~~svI~~~~~I~~~~~i~~~~ig~~~~ig~~~~i~~~~~Ig~~~~Ig~~ 352 (481)
T PRK14358 283 VLLRGQTRVADGVTIGAYSVVTDSVLHEGAVIKPHSVLEGAEVGAGSDVGPFARLRPGTVLGEGVHIGNF 352 (481)
T ss_pred cEEeCCcEECCCCEECCCCEEeeeEECCCCEEeecceecCCeEeCceEECCccEEcCCcEECCCCEECCC
Confidence 3333344445555553 36667788888888884 6667788888888887777763 333333334443
No 103
>TIGR02287 PaaY phenylacetic acid degradation protein PaaY. Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator.
Probab=99.16 E-value=2.1e-10 Score=109.81 Aligned_cols=94 Identities=17% Similarity=0.358 Sum_probs=66.6
Q ss_pred eeEECCCCEEcc-eeEe----ecEEcCCcEECCCCEEe-----eeEEeCCcccCchhhHHhhhcCCccceEeCCCcEEee
Q 009720 406 DAIISHGCFLRE-CTVE----HSIVGERSRLDYGVELK-----DTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRN 475 (527)
Q Consensus 406 ~s~I~~g~~I~~-~~i~----~svIg~~~~I~~~~~I~-----~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~ 475 (527)
++.||++|.|.+ +.|. ..+||++|.|+++|+|+ +++++.. +.||+++.|++
T Consensus 26 ~V~IG~~~~I~~~a~I~gd~g~i~Ig~~t~Ig~~~~I~~~~~~~siIg~~-------------------~~Ig~~a~I~~ 86 (192)
T TIGR02287 26 DVILGKRCYVGPLASLRGDFGRIVLKEGANIQDNCVMHGFPGQDTVVEEN-------------------GHVGHGAILHG 86 (192)
T ss_pred eEEECCCCEECCCcEEEccCCceEECCCCEECCCeEEeccCCCCCeECCC-------------------CEECCCCEEcC
Confidence 556666666663 4443 46899999999999994 4555555 89999999999
Q ss_pred eEEcCCCEECCCcEEeCCCCcCCCccCCCceEEecCeEEEccCCEeCCCc
Q 009720 476 CIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGM 525 (527)
Q Consensus 476 ~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g~~vi~~~~~I~~g~ 525 (527)
|+|++++.||.+++|.+...+++++.++.++ +|.++..|++++
T Consensus 87 siIg~~~~IG~ga~I~~g~~IG~~s~Vgags-------~V~~~~~ip~~~ 129 (192)
T TIGR02287 87 CIVGRNALVGMNAVVMDGAVIGENSIVAASA-------FVKAGAEMPAQY 129 (192)
T ss_pred CEECCCCEECCCcccCCCeEECCCCEEcCCC-------EECCCCEECCCe
Confidence 9999999999999997765555444444443 334555555544
No 104
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=99.16 E-value=1e-09 Score=115.75 Aligned_cols=114 Identities=9% Similarity=0.158 Sum_probs=78.2
Q ss_pred CCCCCCceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCC
Q 009720 88 RRVDPKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNG 167 (527)
Q Consensus 88 ~~~~~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~ 167 (527)
.++++.++.+||||||+|+||+ .+|+|+|++|+ |||+|+++.+.. ..++|+|+++..... .+. .
T Consensus 168 ~~~~~~~i~~iILAGG~SsRmG-----~~K~ll~~~Gk-~ll~~~l~~l~~-~~~~vvV~~~~~~~~---~~~-~----- 231 (369)
T PRK14490 168 GRAEEVPLSGLVLAGGRSSRMG-----SDKALLSYHES-NQLVHTAALLRP-HCQEVFISCRAEQAE---QYR-S----- 231 (369)
T ss_pred cccccCCceEEEEcCCccccCC-----CCcEEEEECCc-cHHHHHHHHHHh-hCCEEEEEeCCchhh---HHh-h-----
Confidence 3444567899999999999996 58999999999 999999999976 478888877653211 111 1
Q ss_pred cccCCCeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceee-cCC-HHHHHHH
Q 009720 168 TNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY-RMD-YMDFIQS 236 (527)
Q Consensus 168 ~~~~~~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~-~~d-l~~ll~~ 236 (527)
++ +.++..... .+|...++..++.... .+.++++.||+-+ ..+ +..+++.
T Consensus 232 --~~---v~~i~d~~~--------~~Gpl~gi~~al~~~~------~~~~lv~~~DmP~i~~~~i~~L~~~ 283 (369)
T PRK14490 232 --FG---IPLITDSYL--------DIGPLGGLLSAQRHHP------DAAWLVVACDLPFLDEATLQQLVEG 283 (369)
T ss_pred --cC---CcEEeCCCC--------CCCcHHHHHHHHHhCC------CCcEEEEeCCcCCCCHHHHHHHHHh
Confidence 12 344433221 1477778877765432 4689999999944 444 4565553
No 105
>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E. coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.
Probab=99.16 E-value=3.6e-10 Score=104.55 Aligned_cols=87 Identities=17% Similarity=0.429 Sum_probs=66.9
Q ss_pred eeEECCCCEEcc-eeEe----ecEEcCCcEECCCCEE-----eeeEEeCCcccCchhhHHhhhcCCccceEeCCCcEEee
Q 009720 406 DAIISHGCFLRE-CTVE----HSIVGERSRLDYGVEL-----KDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRN 475 (527)
Q Consensus 406 ~s~I~~g~~I~~-~~i~----~svIg~~~~I~~~~~I-----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~ 475 (527)
++.||++|+|++ +.|. .++||++|.|+++|.| ++++++.. +.|++++.+.+
T Consensus 18 ~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~Ig~~-------------------~~Ig~~~~i~~ 78 (155)
T cd04745 18 DVIIGKNCYIGPHASLRGDFGRIVIRDGANVQDNCVIHGFPGQDTVLEEN-------------------GHIGHGAILHG 78 (155)
T ss_pred cEEECCCCEECCCcEEeCCCCcEEECCCCEECCCCEEeecCCCCeEEcCC-------------------CEECCCcEEEC
Confidence 567777777763 5554 3789999999999999 44666655 89999999999
Q ss_pred eEEcCCCEECCCcEEeCCCCcCCCccCCCceEEecC
Q 009720 476 CIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSG 511 (527)
Q Consensus 476 ~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g 511 (527)
|+||+++.||.++.|.....+++++.++.++.+..+
T Consensus 79 ~~Ig~~~~Ig~~~~I~~g~~Ig~~~~Ig~~s~v~~~ 114 (155)
T cd04745 79 CTIGRNALVGMNAVVMDGAVIGEESIVGAMAFVKAG 114 (155)
T ss_pred CEECCCCEECCCCEEeCCCEECCCCEECCCCEeCCC
Confidence 999999999999999886656665555555444443
No 106
>PLN02296 carbonate dehydratase
Probab=99.15 E-value=1.6e-10 Score=116.08 Aligned_cols=119 Identities=16% Similarity=0.326 Sum_probs=75.3
Q ss_pred CCCCCCCCCCCccCCCeeeec-eee-eeeEECCCCEEcceeEeecEEcCCcEECCCCEEee-----------eEEeCCcc
Q 009720 381 YDPKTPFYTSPRFLPPTKIDN-CRI-KDAIISHGCFLRECTVEHSIVGERSRLDYGVELKD-----------TVMLGADY 447 (527)
Q Consensus 381 ~~~~~~i~~~~~~~~p~~i~~-~~i-~~s~I~~g~~I~~~~i~~svIg~~~~I~~~~~I~~-----------~~i~~~~~ 447 (527)
++....+...+.+.|.+.|.+ +.| .++.|+++|+|+. .+.+++||++|.|+++|.|.. +++..+
T Consensus 49 ~~~~p~I~~~~~I~p~A~V~G~V~IG~~~~I~~gavI~g-~~~~I~IG~~~~I~d~~vI~~~~~~~~g~~~~siIG~~-- 125 (269)
T PLN02296 49 FDKAPVVDKDAFVAPSASVIGDVQVGRGSSIWYGCVLRG-DVNSISVGSGTNIQDNSLVHVAKTNLSGKVLPTIIGDN-- 125 (269)
T ss_pred cCCCCccCCCCEECCCcEEEcceEECCCCEECCCCEEEc-CCCceEECCCCEECCCCEEEeCCCcccCCCCCcEeCCC--
Confidence 333444555555555555532 222 2455555555542 123468999999999999963 333333
Q ss_pred cCchhhHHhhhcCCccceEeCCCcEEeeeEEcCCCEECCCcEEeCCCCcCCCccCCCceEEecCeEEEccCCEeCCCcc
Q 009720 448 YQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMV 526 (527)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g~~vi~~~~~I~~g~v 526 (527)
+.||+++.|++|+|++++.||.+++|..+..+++++.++.|+ +|.++++|+++++
T Consensus 126 -----------------v~IG~~avI~g~~Igd~v~IG~ga~I~~gv~Ig~~a~IgagS-------vV~~~~~I~~~~~ 180 (269)
T PLN02296 126 -----------------VTIGHSAVLHGCTVEDEAFVGMGATLLDGVVVEKHAMVAAGA-------LVRQNTRIPSGEV 180 (269)
T ss_pred -----------------CEECCCceecCCEECCCcEECCCcEECCCeEECCCCEECCCC-------EEecCCEeCCCeE
Confidence 899999999999999999999999998765555554444443 3355555555543
No 107
>TIGR03202 pucB xanthine dehydrogenase accessory protein pucB. In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental.
Probab=99.15 E-value=5.2e-10 Score=106.60 Aligned_cols=122 Identities=17% Similarity=0.217 Sum_probs=85.3
Q ss_pred EEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCcccCCCeE
Q 009720 96 AAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFV 175 (527)
Q Consensus 96 ~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~~V 175 (527)
.+||||||.|+||+ .+|.|++++|+ |||+|+++.+.+.++++|+|++++..+.+ ..+.+.... ...+
T Consensus 2 ~~vILAgG~s~Rmg-----~~K~ll~~~g~-~ll~~~i~~~~~~~~~~i~vv~~~~~~~~-~~~~~~~~~------~~~~ 68 (190)
T TIGR03202 2 VAIYLAAGQSRRMG-----ENKLALPLGET-TLGSASLKTALSSRLSKVIVVIGEKYAHL-SWLDPYLLA------DERI 68 (190)
T ss_pred eEEEEcCCccccCC-----CCceeceeCCc-cHHHHHHHHHHhCCCCcEEEEeCCccchh-hhhhHhhhc------CCCe
Confidence 58999999999997 37999999999 99999999988899999999998765432 112111111 0114
Q ss_pred EEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceee-cC-CHHHHHHHHHHcC
Q 009720 176 EVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY-RM-DYMDFIQSHVDRD 241 (527)
Q Consensus 176 ~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~-~~-dl~~ll~~h~~~~ 241 (527)
+++... .|..|.+.+|+.++..+.+ ...+.++++.||+-+ .. .+..+++......
T Consensus 69 ~~~~~~--------~~~~G~~~si~~gl~~~~~---~~~d~vlv~~~D~P~v~~~~i~~L~~~~~~~~ 125 (190)
T TIGR03202 69 MLVCCR--------DACEGQAHSLKCGLRKAEA---MGADAVVILLADQPFLTADVINALLALAKRRP 125 (190)
T ss_pred EEEECC--------ChhhhHHHHHHHHHHHhcc---CCCCeEEEEeCCCCCCCHHHHHHHHHHHhhCC
Confidence 443322 2335889999999877631 235789999999943 43 3677777654433
No 108
>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma. Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.14 E-value=2.9e-10 Score=92.66 Aligned_cols=66 Identities=26% Similarity=0.572 Sum_probs=55.3
Q ss_pred ECCCCEEc-ceeEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCcEEeeeEEcCCCEECCC
Q 009720 409 ISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKD 487 (527)
Q Consensus 409 I~~g~~I~-~~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~iI~~~~~Ig~~ 487 (527)
|+++|.|+ ++.|.+++||++|+|++++.|++++++.. +.|++++.|.+++|++++.|+++
T Consensus 2 ig~~~~I~~~~~i~~s~ig~~~~Ig~~~~i~~svi~~~-------------------~~i~~~~~i~~svv~~~~~i~~~ 62 (79)
T cd03356 2 IGESTVIGENAIIKNSVIGDNVRIGDGVTITNSILMDN-------------------VTIGANSVIVDSIIGDNAVIGEN 62 (79)
T ss_pred ccCCcEECCCCEEeCCEECCCCEECCCCEEeCCEEeCC-------------------CEECCCCEEECCEECCCCEECCC
Confidence 56677776 35666789999999999999999988877 89999999999999999999999
Q ss_pred cEEeCC
Q 009720 488 VVIVNK 493 (527)
Q Consensus 488 ~~i~~~ 493 (527)
+.+.+.
T Consensus 63 ~~i~~~ 68 (79)
T cd03356 63 VRVVNL 68 (79)
T ss_pred CEEcCC
Confidence 888663
No 109
>PRK13627 carnitine operon protein CaiE; Provisional
Probab=99.12 E-value=5.3e-10 Score=107.43 Aligned_cols=89 Identities=17% Similarity=0.351 Sum_probs=60.7
Q ss_pred eeEECCCCEEcc-eeEee----cEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCcEEeeeEEcC
Q 009720 406 DAIISHGCFLRE-CTVEH----SIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDK 480 (527)
Q Consensus 406 ~s~I~~g~~I~~-~~i~~----svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~iI~~ 480 (527)
+++||++|.|++ +.|.. .+||++|.|+++|.|+..... .+.+.++ +.||+++.|.+|+|++
T Consensus 28 ~V~IG~~~~I~~~avIrgd~~~i~Ig~~~~Ig~~~~I~~~~~~-----------~siIg~~---~~Ig~~a~i~g~vIG~ 93 (196)
T PRK13627 28 DVIVGAGVYIGPLASLRGDYGRLIVQAGANLQDGCIMHGYCDT-----------DTIVGEN---GHIGHGAILHGCVIGR 93 (196)
T ss_pred ceEECCCCEECCCCEEecCCccEEECCCCEECCCCEEeCCCCC-----------CCEECCC---CEECCCcEEeeEEECC
Confidence 555666666663 44433 578999999999988653211 1233333 8999999999999999
Q ss_pred CCEECCCcEEeCCCCcCCCccCCCceEE
Q 009720 481 NVKIGKDVVIVNKDDVQEADRPELGFYI 508 (527)
Q Consensus 481 ~~~Ig~~~~i~~~~~v~~~~~~~~~~~i 508 (527)
++.||.+++|.+...+++++.++.|+.+
T Consensus 94 ~v~IG~ga~V~~g~~IG~~s~Vgags~V 121 (196)
T PRK13627 94 DALVGMNSVIMDGAVIGEESIVAAMSFV 121 (196)
T ss_pred CCEECcCCccCCCcEECCCCEEcCCCEE
Confidence 9999999999876555554444444333
No 110
>cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat. Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration.
Probab=99.12 E-value=2.7e-09 Score=104.97 Aligned_cols=115 Identities=23% Similarity=0.265 Sum_probs=78.6
Q ss_pred EEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcC-CCEEEEEeccCc--hhHHHHHHHhhccCCcccCCC
Q 009720 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSG-INKIFVLTQFNS--ASLNRHIARTYFGNGTNFGDG 173 (527)
Q Consensus 97 aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~G-i~~I~Iv~~~~~--~~i~~hl~~~y~~~~~~~~~~ 173 (527)
+||||||.++||. +|+|+|++|+ |||+|+++.+..++ +++|+|+++... +.+.+++. . .+
T Consensus 2 aiIlA~G~S~R~~------~K~ll~l~Gk-pli~~~i~~l~~~~~~~~ivVv~~~~~~~~~i~~~~~-~-------~~-- 64 (233)
T cd02518 2 AIIQARMGSTRLP------GKVLKPLGGK-PLLEHLLDRLKRSKLIDEIVIATSTNEEDDPLEALAK-K-------LG-- 64 (233)
T ss_pred EEEeeCCCCCCCC------CCcccccCCc-cHHHHHHHHHHhCCCCCeEEEECCCCcccHHHHHHHH-H-------cC--
Confidence 7999999999993 4999999999 99999999999987 899999998765 44544442 1 11
Q ss_pred eEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceee--cCCHHHHHHHHHHcCCcEE
Q 009720 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY--RMDYMDFIQSHVDRDADIT 245 (527)
Q Consensus 174 ~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~--~~dl~~ll~~h~~~~ad~t 245 (527)
++++..... + .+..+...++. ...+.++++.||+-+ ...+..+++.+...+.+++
T Consensus 65 -v~~v~~~~~----------~---~l~~~~~~~~~---~~~d~vli~~~D~P~i~~~~i~~li~~~~~~~~~~~ 121 (233)
T cd02518 65 -VKVFRGSEE----------D---VLGRYYQAAEE---YNADVVVRITGDCPLIDPEIIDAVIRLFLKSGADYT 121 (233)
T ss_pred -CeEEECCch----------h---HHHHHHHHHHH---cCCCEEEEeCCCCCCCCHHHHHHHHHHHHhCCCCEE
Confidence 344332211 1 12222222221 234789999999944 3457899998876666554
No 111
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.12 E-value=2e-10 Score=124.13 Aligned_cols=85 Identities=19% Similarity=0.305 Sum_probs=37.6
Q ss_pred eeEECCCCEEcc-eeEe-ecEEcCCcEECCCCEEeeeEEeCCcccCchhhH-HhhhcCCccceEeCCCcEEe--------
Q 009720 406 DAIISHGCFLRE-CTVE-HSIVGERSRLDYGVELKDTVMLGADYYQTESEI-ASLLAEGKVPIGVGRNTKIR-------- 474 (527)
Q Consensus 406 ~s~I~~g~~I~~-~~i~-~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~Ig~~~~I~-------- 474 (527)
+++|+++|.|++ +.|. +++||++|+|+.+++|++++++.........-+ .+.+++. +.||+++.+.
T Consensus 321 ~~~ig~~~~Ig~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~ig~~~ig~~---~~Ig~~~~~~~~~~~~~~ 397 (456)
T PRK14356 321 GAEVGDGCSVGPYARLRPGAVLEEGARVGNFVEMKKAVLGKGAKANHLTYLGDAEIGAG---ANIGAGTITCNYDGVNKH 397 (456)
T ss_pred ccceecccEECCceEECCCCEECCCCEecCCceeeeeEecCCcEecccccccCeEECCC---CEECCCceeeccccccCC
Confidence 344444444442 3332 455555555555555555555544211111000 1222222 4444444331
Q ss_pred eeEEcCCCEECCCcEEeCC
Q 009720 475 NCIIDKNVKIGKDVVIVNK 493 (527)
Q Consensus 475 ~~iI~~~~~Ig~~~~i~~~ 493 (527)
+++||+++.||.++.|...
T Consensus 398 ~~~igd~~~ig~~~~i~~~ 416 (456)
T PRK14356 398 RTVIGEGAFIGSNTALVAP 416 (456)
T ss_pred CCEECCCcEEcCCCEEeCC
Confidence 3556666666666665543
No 112
>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.11 E-value=4.1e-10 Score=92.49 Aligned_cols=76 Identities=13% Similarity=0.412 Sum_probs=67.4
Q ss_pred CCCeeee-ceeeeeeEECCCCEEcc-eeEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCc
Q 009720 394 LPPTKID-NCRIKDAIISHGCFLRE-CTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNT 471 (527)
Q Consensus 394 ~~p~~i~-~~~i~~s~I~~g~~I~~-~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~ 471 (527)
.+.+.|. ++.|.+++|+++|.|++ +.|.+|+|++++.|+++|+|.+++++.+ +.|++++
T Consensus 3 g~~~~I~~~~~i~~~~Ig~~~~I~~~~~i~~s~i~~~~~ig~~~~l~~svi~~~-------------------~~i~~~~ 63 (81)
T cd04652 3 GENTQVGEKTSIKRSVIGANCKIGKRVKITNCVIMDNVTIEDGCTLENCIIGNG-------------------AVIGEKC 63 (81)
T ss_pred cCCCEECCCCEEeCcEECCCCEECCCCEEeCcEEeCCCEECCCCEEeccEEeCC-------------------CEECCCC
Confidence 4556664 36677899999999984 8899999999999999999999999887 9999999
Q ss_pred EEeeeEEcCCCEECCCc
Q 009720 472 KIRNCIIDKNVKIGKDV 488 (527)
Q Consensus 472 ~I~~~iI~~~~~Ig~~~ 488 (527)
.+.+|+|+++++|++++
T Consensus 64 ~v~~~ii~~~~~i~~~~ 80 (81)
T cd04652 64 KLKDCLVGSGYRVEAGT 80 (81)
T ss_pred EEccCEECCCcEeCCCC
Confidence 99999999999999874
No 113
>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase. This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).
Probab=99.11 E-value=3.7e-10 Score=116.74 Aligned_cols=53 Identities=19% Similarity=0.236 Sum_probs=31.7
Q ss_pred eeEEcCCCEECCCcEEeCCCCcCCCccCCCceEEecCe-----EEEccCCEeCCCccC
Q 009720 475 NCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGI-----TIIMEKATIEDGMVI 527 (527)
Q Consensus 475 ~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g~-----~vi~~~~~I~~g~vi 527 (527)
.+.|++|++||+++.|.+..++....++++++.+..+. +.||+++.|+.+++|
T Consensus 229 ~v~I~~~v~IG~~~~I~~~~~iag~~~IG~~~~ig~~~~I~~~v~Ig~~~~ig~~s~V 286 (324)
T TIGR01853 229 LVQIAHNCRIGENCIIVAQVGIAGSTKIGRNVIIGGQVGVAGHLEIGDNVTIGAKSGV 286 (324)
T ss_pred CcEECCCCEECCCcEECCcceEcCccEECCCeEEccccccccCCEECCCCEEccCCEe
Confidence 34566666666666666666666666666666664442 234666666666543
No 114
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=99.10 E-value=2.3e-10 Score=118.40 Aligned_cols=99 Identities=15% Similarity=0.313 Sum_probs=74.1
Q ss_pred eeEECCCCEEcc-eeEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCcEEe-eeEEcCCCE
Q 009720 406 DAIISHGCFLRE-CTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR-NCIIDKNVK 483 (527)
Q Consensus 406 ~s~I~~g~~I~~-~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~-~~iI~~~~~ 483 (527)
++.||++|+|++ |.|++|.||+++.|...|.|+++.+..+ +.||.-++++ ++.++.+++
T Consensus 286 ~t~ig~~v~iGpg~~i~ds~I~~~a~I~~~S~ie~s~vg~~-------------------~~VGPfA~LRPg~~L~~~~h 346 (460)
T COG1207 286 NTVIGDNVVIGPGSVIKDSVIGDNAVIKAYSVIEGSTVGEG-------------------ATVGPFARLRPGAVLGADVH 346 (460)
T ss_pred eEEECCceEECCCcEEEeeEEcCCCEEEecceeeccEecCC-------------------cccCCccccCCcCcccCCCe
Confidence 455555555553 4555555555555555555555554444 7888888887 889999999
Q ss_pred ECCCcEEeCCCCcCCCccCCCceEEecCeEEEccCCEeCCCcc
Q 009720 484 IGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMV 526 (527)
Q Consensus 484 Ig~~~~i~~~~~v~~~~~~~~~~~i~~g~~vi~~~~~I~~g~v 526 (527)
||..|.+.++ .++++.++++-.||++ +.||+++.||+||+
T Consensus 347 IGNFVEvK~a-~ig~gsKa~HLtYlGD--A~iG~~~NiGAGtI 386 (460)
T COG1207 347 IGNFVEVKKA-TIGKGSKAGHLTYLGD--AEIGENVNIGAGTI 386 (460)
T ss_pred EeeeEEEecc-cccCCccccceeeecc--ceecCCceeccceE
Confidence 9999999876 6888999999999988 78899999999986
No 115
>cd04193 UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc), the activated form of GlcNAc, is a key precursor of N- and O-linked glycosylations. It is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker which anchors a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Human UAP has two isoforms, resulting from alternative splicing of a single gene and differing by the presence or absence of 17 amino acids. UDPGlcNAc pyrophosphorylase shares significant sequence and structure conservation with UDPglucose pyrophosphorylase.
Probab=99.10 E-value=3.4e-09 Score=109.41 Aligned_cols=217 Identities=18% Similarity=0.262 Sum_probs=132.9
Q ss_pred CCceEEEEEeCCCCCccccCccCCCccceeeC---CcchhHHHHHHHHHHcC-----------CCEEEEEec-cCchhHH
Q 009720 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVA---GCYRLIDIPMSNCINSG-----------INKIFVLTQ-FNSASLN 156 (527)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIg---Gk~pLId~~l~~l~~~G-----------i~~I~Iv~~-~~~~~i~ 156 (527)
..+|.+||||||.|||| +...||+|+||+ |+ |++++.++.+...+ .-.++|.|+ +..+.+.
T Consensus 13 ~~~va~viLaGG~GTRL---g~~~PK~l~pv~~~~~k-~ll~~~~e~l~~l~~~~~~~~~~~~~ip~~imtS~~t~~~t~ 88 (323)
T cd04193 13 EGKVAVLLLAGGQGTRL---GFDGPKGMFPVGLPSKK-SLFQLQAERILKLQELAGEASGKKVPIPWYIMTSEATHEETR 88 (323)
T ss_pred cCCEEEEEECCCccccc---CCCCCeEEEEecCCCCC-cHHHHHHHHHHHHHHHHhhccCCCCCceEEEEcChhHhHHHH
Confidence 34689999999999999 578899999998 68 99999999998842 124568887 6778888
Q ss_pred HHHHH-hhccCCc-c---cCCCeEEEeccccCC----CCCCCCcccChHHHHHHHHH--HHHhhhcCCCCeEEEEcCcee
Q 009720 157 RHIAR-TYFGNGT-N---FGDGFVEVLAATQTP----GESGKNWFQGTADAVRQFTW--VFEDAKNRNIENVAILCGDHL 225 (527)
Q Consensus 157 ~hl~~-~y~~~~~-~---~~~~~V~vl~~~q~~----~~~~~~~~~Gta~al~~a~~--~l~~~~~~~~e~~Lvl~gD~l 225 (527)
+++.+ .||+... + |.+..+..+..+... ...-.-.+-|.++....... .++++...+.+.+.+.+.|++
T Consensus 89 ~~~~~~~~fGl~~~~i~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhG~i~~aL~~sG~l~~l~~~G~~yi~v~~vDN~ 168 (323)
T cd04193 89 KFFKENNYFGLDPEQVHFFQQGMLPCVDFDGKILLEEKGKIAMAPNGNGGLYKALQTAGILEDMKKRGIKYIHVYSVDNI 168 (323)
T ss_pred HHHHhCCcCCCCCceEEEEecCceeeEcCCCccccCCCCccccCCCCchHHHHHHHHCChHHHHHhCCCEEEEEEecCcc
Confidence 88864 3344210 0 111112222111000 00001233688876655432 466666678899999999995
Q ss_pred -ecCCHHHHHHHHHHcCCcEEEEEEEcCCCCCCCce-EEEECCCCceEEEEecCCccccccccccccccCCCccccccCC
Q 009720 226 -YRMDYMDFIQSHVDRDADITISCAAVGESRASDYG-LVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCP 303 (527)
Q Consensus 226 -~~~dl~~ll~~h~~~~ad~tv~~~~~~~~~~~~~g-~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~ 303 (527)
...-=-.++-.+.++++++.+-+.+...+. .+-| ++..|..-++.++.|-|...... ...+. -+ ..
T Consensus 169 L~~~~Dp~~lG~~~~~~~~~~~kvv~k~~~~-ekvG~l~~~~g~~~vvEysel~~~~~~~-~~~~g-~l---------~f 236 (323)
T cd04193 169 LVKVADPVFIGFCISKGADVGAKVVRKRYPT-EKVGVVVLVDGKPQVVEYSEISDELAEK-RDADG-EL---------QY 236 (323)
T ss_pred cccccCHHHhHHHHHcCCceEEEEEECCCCC-CceeEEEEECCeEEEEEeecCCHHHHhc-cCcCC-cE---------ec
Confidence 433335677788888999988776655322 2344 44445444566666655433211 01110 00 11
Q ss_pred ceeeeeEEEEeHHHHHHHHHh
Q 009720 304 YVASMGVYVFKKDVLFKLLRW 324 (527)
Q Consensus 304 ~l~~~GIYif~~~iL~~ll~~ 324 (527)
+..++.+.+|+.++|.++++.
T Consensus 237 ~~~ni~~~~fsl~fl~~~~~~ 257 (323)
T cd04193 237 NAGNIANHFFSLDFLEKAAEM 257 (323)
T ss_pred ccchHhhheeCHHHHHHHHhh
Confidence 345667888999998877653
No 116
>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family. This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.
Probab=99.09 E-value=4.7e-10 Score=108.53 Aligned_cols=27 Identities=30% Similarity=0.110 Sum_probs=12.4
Q ss_pred eEeCCCcEEeeeEEcCCCEECCCcEEe
Q 009720 465 IGVGRNTKIRNCIIDKNVKIGKDVVIV 491 (527)
Q Consensus 465 ~~Ig~~~~I~~~iI~~~~~Ig~~~~i~ 491 (527)
+.|++++.|.+|+||+++.|+++++|.
T Consensus 43 s~I~~~~~i~~~~IG~~~~I~~~v~I~ 69 (204)
T TIGR03308 43 SYVMRDCDIIYTTIGKFCSIAAMVRIN 69 (204)
T ss_pred CEECCCcEEeeeEECCCCEECCCCEEC
Confidence 444444444444444444444444443
No 117
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=99.09 E-value=4e-10 Score=121.43 Aligned_cols=44 Identities=11% Similarity=0.250 Sum_probs=33.4
Q ss_pred eeee-eeEECCCCEEcc-eeEeecEEcCCcEECCCCEEeeeEEeCC
Q 009720 402 CRIK-DAIISHGCFLRE-CTVEHSIVGERSRLDYGVELKDTVMLGA 445 (527)
Q Consensus 402 ~~i~-~s~I~~g~~I~~-~~i~~svIg~~~~I~~~~~I~~~~i~~~ 445 (527)
+.|. +++||++|.|++ +.|.+++||++|+|+++|+|.++++..+
T Consensus 274 ~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~ 319 (451)
T TIGR01173 274 VILEGKVKIGDDVVIGPGCVIKNSVIGSNVVIKAYSVLEGSEIGEG 319 (451)
T ss_pred eEEeCceEECCCCEECCCcEEeeeEecCCCEEeeecEEecccccCC
Confidence 4443 577888888884 7778888888888888888887776655
No 118
>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.08 E-value=1.3e-09 Score=102.01 Aligned_cols=98 Identities=13% Similarity=0.090 Sum_probs=65.1
Q ss_pred eeEECCCCEEcc-eeEe----ecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCcEEeeeEEcC
Q 009720 406 DAIISHGCFLRE-CTVE----HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDK 480 (527)
Q Consensus 406 ~s~I~~g~~I~~-~~i~----~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~iI~~ 480 (527)
++.||++|+|++ +.|. .++||++|.|+++|.|.+++.+..... ....++++ +.|+.+++|.+++||+
T Consensus 17 ~v~IG~~~~I~~~a~I~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~-----~~v~IG~~---~~i~~~~~i~~~~IGd 88 (164)
T cd04646 17 DVTIGPGTVVHPRATIIAEAGPIIIGENNIIEEQVTIVNKKPKDPAEP-----KPMIIGSN---NVFEVGCKCEALKIGN 88 (164)
T ss_pred ceEECCCCEEcCCeEEecCCCCeEECCCCEECCCcEEecCCCCCCCCC-----CCeEECCC---CEECCCcEEEeeEECC
Confidence 566777777764 4453 368999999999999988765422100 00112222 5666678888899999
Q ss_pred CCEECCCcEEeCCCCcCCCccCCCceEEecC
Q 009720 481 NVKIGKDVVIVNKDDVQEADRPELGFYIRSG 511 (527)
Q Consensus 481 ~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g 511 (527)
++.||.+++|.....+++++.++.++.|..+
T Consensus 89 ~~~Ig~~a~I~~gv~Ig~~~~IgagsvV~~~ 119 (164)
T cd04646 89 NNVFESKSFVGKNVIITDGCIIGAGCKLPSS 119 (164)
T ss_pred CCEEeCCCEECCCCEECCCCEEeCCeEECCC
Confidence 9999999999876666665555555555444
No 119
>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]
Probab=99.08 E-value=6e-10 Score=112.84 Aligned_cols=50 Identities=22% Similarity=0.252 Sum_probs=38.3
Q ss_pred eeEEcCCCEECCCcEEeCCCCcCCCccCCCceEEecCeEEEccCCEeCCCccC
Q 009720 475 NCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 527 (527)
Q Consensus 475 ~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g~~vi~~~~~I~~g~vi 527 (527)
+.+|++++.||.|+.|-- +.-+.+.+++++.|.+. +-|++||.||+++.|
T Consensus 202 ~V~Igd~VeIGanT~Idr--ga~~dTvIg~~~kIdN~-vqIaHnv~IG~~~~I 251 (338)
T COG1044 202 RVIIGDDVEIGANTTIDR--GALDDTVIGEGVKIDNL-VQIGHNVRIGEHCII 251 (338)
T ss_pred eEEECCceEEcccceecc--ccccCceecCCcEEcce-eEEccccEECCCcEE
Confidence 577777777777777733 34456899999999776 566999999998875
No 120
>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains. Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.08 E-value=9.6e-10 Score=102.45 Aligned_cols=92 Identities=18% Similarity=0.255 Sum_probs=65.9
Q ss_pred CCCccCCCeeeeceeeeeeEECCCCEEcceeEeecEEcCCcEECCCCEEee-eEEeCCcccCchhhHHhhhcCCccceEe
Q 009720 389 TSPRFLPPTKIDNCRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKD-TVMLGADYYQTESEIASLLAEGKVPIGV 467 (527)
Q Consensus 389 ~~~~~~~p~~i~~~~i~~s~I~~g~~I~~~~i~~svIg~~~~I~~~~~I~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~I 467 (527)
..+.+.+++.|++ ++.|++++.|++ +++||++|+|+++|.|+. ++++.+ +.|
T Consensus 10 ~~~~i~~~v~ig~----~~~I~~~a~i~~----~v~Ig~~~~I~~~~~i~~~~~Ig~~-------------------~~I 62 (163)
T cd05636 10 EGVTIKGPVWIGE----GAIVRSGAYIEG----PVIIGKGCEIGPNAYIRGYTVLGDG-------------------CVV 62 (163)
T ss_pred CCCEECCCeEEcC----CCEECCCCEEeC----CeEECCCCEECCCCEEcCCCEECCC-------------------CEE
Confidence 3344444444443 555556555543 489999999999999986 555544 999
Q ss_pred CCCcEEeeeEEcCCCEECCCcEEeCCCCcCCCccCCCceEE
Q 009720 468 GRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYI 508 (527)
Q Consensus 468 g~~~~I~~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i 508 (527)
++++.|.+|+|++++.|+.++.+.+. .++++.+++.++.+
T Consensus 63 ~~~~~i~~siig~~~~I~~~~~i~~s-iIg~~~~I~~~~~i 102 (163)
T cd05636 63 GNSVEVKNSIIMDGTKVPHLNYVGDS-VLGENVNLGAGTIT 102 (163)
T ss_pred CCCcEEeeeEecCCCEeccCCEEecC-EECCCCEECCCcEE
Confidence 99999999999999999988777543 46666666666655
No 121
>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.07 E-value=6.9e-10 Score=90.09 Aligned_cols=66 Identities=20% Similarity=0.405 Sum_probs=55.8
Q ss_pred ECCCCEEcc-eeEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCcEEeeeEEcCCCEECCC
Q 009720 409 ISHGCFLRE-CTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKD 487 (527)
Q Consensus 409 I~~g~~I~~-~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~iI~~~~~Ig~~ 487 (527)
|+++|.|++ +.|.+++||++|.|+++|+|.+++++.+ +.|++++.|.+|+|+++++|+++
T Consensus 2 ig~~~~I~~~~~i~~s~ig~~~~ig~~~~i~~s~i~~~-------------------~~i~~~~~i~~~~i~~~~~i~~~ 62 (79)
T cd05787 2 IGRGTSIGEGTTIKNSVIGRNCKIGKNVVIDNSYIWDD-------------------VTIEDGCTIHHSIVADGAVIGKG 62 (79)
T ss_pred ccCCCEECCCCEEeccEECCCCEECCCCEEeCcEEeCC-------------------CEECCCCEEeCcEEcCCCEECCC
Confidence 566666663 5666789999999999999999888877 89999999999999999999999
Q ss_pred cEEeCC
Q 009720 488 VVIVNK 493 (527)
Q Consensus 488 ~~i~~~ 493 (527)
+.|...
T Consensus 63 ~~i~~~ 68 (79)
T cd05787 63 CTIPPG 68 (79)
T ss_pred CEECCC
Confidence 888654
No 122
>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional
Probab=99.07 E-value=6.9e-10 Score=111.13 Aligned_cols=33 Identities=27% Similarity=0.408 Sum_probs=13.5
Q ss_pred eEEcCCCEECCCcEEeCCCCcCCCccCCCceEE
Q 009720 476 CIIDKNVKIGKDVVIVNKDDVQEADRPELGFYI 508 (527)
Q Consensus 476 ~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i 508 (527)
++|++|+.||.+++|..+..+++++.++.+++|
T Consensus 177 viIgDnv~IGa~s~I~~Gv~IGdgavIgag~vV 209 (272)
T PRK11830 177 VIIEDNCFIGARSEVVEGVIVEEGSVLGMGVFL 209 (272)
T ss_pred eEEcCCCEECCCCEEcCCCEECCCCEEcCCCEE
Confidence 444444444444444333333333333333333
No 123
>COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism]
Probab=99.06 E-value=3.9e-09 Score=101.05 Aligned_cols=113 Identities=18% Similarity=0.261 Sum_probs=80.0
Q ss_pred CCceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCcccC
Q 009720 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFG 171 (527)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~ 171 (527)
+..|.+||||||+++|| .+|+|++++|+ |||+|+++.|....- .++|....+.+. |.. ++
T Consensus 2 ~~~~~~vILAGG~srRm------~dK~l~~~~g~-~lie~v~~~L~~~~~-~vvi~~~~~~~~--------~~~----~g 61 (192)
T COG0746 2 MTPMTGVILAGGKSRRM------RDKALLPLNGR-PLIEHVIDRLRPQVD-VVVISANRNQGR--------YAE----FG 61 (192)
T ss_pred CCCceEEEecCCccccc------cccccceeCCe-EHHHHHHHHhcccCC-EEEEeCCCchhh--------hhc----cC
Confidence 56789999999999999 68999999999 999999999988755 555555443221 211 22
Q ss_pred CCeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceee-cCC-HHHHHHHHHHcC
Q 009720 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY-RMD-YMDFIQSHVDRD 241 (527)
Q Consensus 172 ~~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~-~~d-l~~ll~~h~~~~ 241 (527)
++++..... ++ |...+|+.++..+. .+.++++.||+=+ ..+ +..+.+...+.+
T Consensus 62 ---~~vv~D~~~-------~~-GPL~Gi~~al~~~~------~~~~~v~~~D~P~i~~~lv~~l~~~~~~~~ 116 (192)
T COG0746 62 ---LPVVPDELP-------GF-GPLAGILAALRHFG------TEWVLVLPCDMPFIPPELVERLLSAFKQTG 116 (192)
T ss_pred ---CceeecCCC-------CC-CCHHHHHHHHHhCC------CCeEEEEecCCCCCCHHHHHHHHHhhcccC
Confidence 455544332 12 88999999887764 5899999999944 444 466665554333
No 124
>COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism]
Probab=99.05 E-value=3e-08 Score=96.96 Aligned_cols=223 Identities=17% Similarity=0.169 Sum_probs=132.4
Q ss_pred CCceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHc-CCCEEEEEeccCch-hHHHHHHHhhccCCcc
Q 009720 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINS-GINKIFVLTQFNSA-SLNRHIARTYFGNGTN 169 (527)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~-Gi~~I~Iv~~~~~~-~i~~hl~~~y~~~~~~ 169 (527)
+.++.+||||||.|+||.. ..||.+++++|+ |||+|+++.+..+ .|++|+|+++.... .+.++.. +
T Consensus 2 ~~~~~~vilAaG~G~R~~~---~~pKq~l~l~g~-pll~~tl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~--~------ 69 (230)
T COG1211 2 RMMVSAVILAAGFGSRMGN---PVPKQYLELGGR-PLLEHTLEAFLESPAIDEIVVVVSPEDDPYFEKLPK--L------ 69 (230)
T ss_pred CceEEEEEEcCccccccCC---CCCceEEEECCE-EehHHHHHHHHhCcCCCeEEEEEChhhhHHHHHhhh--h------
Confidence 3467899999999999985 799999999999 9999999999887 58999999976332 2222221 1
Q ss_pred cCCCeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCc--eeecCCHHHHHHHHHHcCCcEEEE
Q 009720 170 FGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGD--HLYRMDYMDFIQSHVDRDADITIS 247 (527)
Q Consensus 170 ~~~~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD--~l~~~dl~~ll~~h~~~~ad~tv~ 247 (527)
.....++++..-. .-.++++.++..+.. ...+.||+--+= .+....+.++++... +....+.
T Consensus 70 ~~~~~v~~v~GG~-----------~R~~SV~~gL~~~~~---~~~~~VlvHDaaRPf~~~~~i~~li~~~~--~~~aai~ 133 (230)
T COG1211 70 SADKRVEVVKGGA-----------TRQESVYNGLQALSK---YDSDWVLVHDAARPFLTPKLIKRLIELAD--KYGAAIL 133 (230)
T ss_pred ccCCeEEEecCCc-----------cHHHHHHHHHHHhhc---cCCCEEEEeccccCCCCHHHHHHHHHhhc--cCCcEEE
Confidence 1122356554322 456889988888762 122344443331 123344677774333 3444666
Q ss_pred EEEcCCCCCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCC
Q 009720 248 CAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP 327 (527)
Q Consensus 248 ~~~~~~~~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~ 327 (527)
+.++.+ .+...|+++.+.+...... +...+ .| -.|+.+.|.+.++....
T Consensus 134 alpv~D------Tik~~~~~~~i~~t~~R~~---l~~~Q--------TP--------------Q~F~~~~L~~a~~~a~~ 182 (230)
T COG1211 134 ALPVTD------TLKRVDADGNIVETVDRSG---LWAAQ--------TP--------------QAFRLELLKQALARAFA 182 (230)
T ss_pred EeeccC------cEEEecCCCCeeeccChhh---hhhhh--------CC--------------ccccHHHHHHHHHHHHh
Confidence 666654 2444555666655433221 11111 11 34677777666654433
Q ss_pred CCCchhhhhHHhhhhcCceEEEEecceEEecCCHHHHHHHHHHhhc
Q 009720 328 TSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTK 373 (527)
Q Consensus 328 ~~~d~~~dii~~li~~~~V~~~~~~g~w~dIgt~~d~~~An~~ll~ 373 (527)
...++..|.--......++..+.=+-+-+-|.||+|+.-|+..+.+
T Consensus 183 ~~~~~tDdas~~e~~G~~v~lV~G~~~n~KiTtpeDL~~a~~il~~ 228 (230)
T COG1211 183 EGREITDDASAIEKAGGPVSLVEGSADNFKITTPEDLEIAEAILRR 228 (230)
T ss_pred cCCCcCCHHHHHHHcCCCeEEEecCcceeEecCHHHHHHHHHHhcC
Confidence 2223222211111114566655545567899999999999877653
No 125
>PLN02472 uncharacterized protein
Probab=99.04 E-value=7.1e-10 Score=109.96 Aligned_cols=124 Identities=17% Similarity=0.241 Sum_probs=71.2
Q ss_pred CCCCCCccCCCeeeec-eee-eeeEECCCCEEcceeEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCcc
Q 009720 386 PFYTSPRFLPPTKIDN-CRI-KDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKV 463 (527)
Q Consensus 386 ~i~~~~~~~~p~~i~~-~~i-~~s~I~~g~~I~~~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~ 463 (527)
.+...+.+.|++.+.+ +.| .++.|+++++|+. .....+||.+|.|+++|.|+....... ...-.+.++++
T Consensus 61 ~i~~~~~I~p~a~i~G~V~Ig~~a~I~~gavirg-d~~~I~IG~~t~Ig~~~vI~~~~~~~~-----~i~~~tvIG~~-- 132 (246)
T PLN02472 61 KVAVDAYVAPNVVLAGQVTVWDGASVWNGAVLRG-DLNKITVGFCSNVQERCVLHAAWNSPT-----GLPAETLIDRY-- 132 (246)
T ss_pred ccCCCCEECCCCEEecCEEECCCCEEcCCCEEec-CCcceEECCCCEECCCCEEeecCcccc-----CCCCCcEECCC--
Confidence 3444445555555533 333 2455555555551 112358999999999999963110000 00000122222
Q ss_pred ceEeCCCcEEeeeEEcCCCEECCCcEEeCCCCcCCCccCCCceEEecCeEEEccCCEeCCCc
Q 009720 464 PIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGM 525 (527)
Q Consensus 464 ~~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g~~vi~~~~~I~~g~ 525 (527)
+.||++|.|.+|+|++++.||.+++|.++..+++++.++.++ +|.++..|++|.
T Consensus 133 -v~IG~~s~L~~~~Igd~v~IG~~svI~~gavIg~~~~Ig~gs-------vV~~g~~Ip~g~ 186 (246)
T PLN02472 133 -VTIGAYSLLRSCTIEPECIIGQHSILMEGSLVETHSILEAGS-------VLPPGRRIPTGE 186 (246)
T ss_pred -CEECCCcEECCeEEcCCCEECCCCEECCCCEECCCCEECCCC-------EECCCCEeCCCC
Confidence 899999999999999999999999998765444444433333 334445555544
No 126
>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.03 E-value=1.4e-09 Score=109.41 Aligned_cols=139 Identities=13% Similarity=0.129 Sum_probs=68.1
Q ss_pred CCCCCCCCCCCccCCCeeeec-eee-eeeEECCCCEEcc-eeEe-ecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHh
Q 009720 381 YDPKTPFYTSPRFLPPTKIDN-CRI-KDAIISHGCFLRE-CTVE-HSIVGERSRLDYGVELKDTVMLGADYYQTESEIAS 456 (527)
Q Consensus 381 ~~~~~~i~~~~~~~~p~~i~~-~~i-~~s~I~~g~~I~~-~~i~-~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~ 456 (527)
++|.+.+.+++.+..++.|++ |.| .++.||++|.|++ +.|. +++||++|+|++++.|..... .-.|..+ ....
T Consensus 5 I~p~a~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~Ig~~~q--~~~~~g~-~~~v 81 (262)
T PRK05289 5 IHPTAIVEPGAKIGENVEIGPFCVIGPNVVIGDGTVIGSHVVIDGHTTIGKNNRIFPFASIGEDPQ--DLKYKGE-PTRL 81 (262)
T ss_pred cCCCCEECCCCEECCCCEECCCeEECCCCEECCCCEECCCCEEcCccEECCCCEEcccceecCCce--eecccCC-CCeE
Confidence 344555555555555555543 444 3566666666663 3332 456666666666666643100 0001000 0011
Q ss_pred hhcCCccceEeCCCcEEee--------eEEcCCCEECCCcEEeCCCCcCCCccCCCceEEecCeEEEccCCEeCCCcc
Q 009720 457 LLAEGKVPIGVGRNTKIRN--------CIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMV 526 (527)
Q Consensus 457 ~~~~~~~~~~Ig~~~~I~~--------~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g~~vi~~~~~I~~g~v 526 (527)
.++++ +.|++++.|.+ ++||+++.|+.++.|.....+++++.+..++.+..+ ++|++++.|+.+++
T Consensus 82 ~IG~~---~~I~e~~~I~~~~~~~~~~t~IG~~~~I~~~~~I~h~~~IG~~v~i~~~~~i~g~-v~Igd~~~Ig~~~~ 155 (262)
T PRK05289 82 VIGDN---NTIREFVTINRGTVQGGGVTRIGDNNLLMAYVHVAHDCVVGNHVILANNATLAGH-VEVGDYAIIGGLTA 155 (262)
T ss_pred EECCC---CEECCCeEEecccccCCCeeEECCceEECCCCEECCeEEECCCeEECCccccccc-cccCCcEEEeecce
Confidence 12222 66677677653 356666666666666544444444444444444333 44566666665554
No 127
>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase. It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.
Probab=99.03 E-value=1.5e-09 Score=93.70 Aligned_cols=70 Identities=24% Similarity=0.386 Sum_probs=55.9
Q ss_pred eeEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCcEEeeeEEcCCCEECCCcEEeCCCCcC
Q 009720 418 CTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQ 497 (527)
Q Consensus 418 ~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~~~v~ 497 (527)
+.|.+|+||++|+|+ ++.|++++++.. +.|++++.|.+|+|++++.||+++.+.+. .++
T Consensus 8 ~~i~~s~Ig~~~~I~-~~~I~~svi~~~-------------------~~Ig~~~~I~~siI~~~~~Ig~~~~i~~s-iig 66 (104)
T cd04651 8 GEVKNSLVSEGCIIS-GGTVENSVLFRG-------------------VRVGSGSVVEDSVIMPNVGIGRNAVIRRA-IID 66 (104)
T ss_pred CEEEeEEECCCCEEc-CeEEEeCEEeCC-------------------CEECCCCEEEEeEEcCCCEECCCCEEEeE-EEC
Confidence 444578999999999 999999999988 99999999999999999999999999652 333
Q ss_pred CCccCCCceEE
Q 009720 498 EADRPELGFYI 508 (527)
Q Consensus 498 ~~~~~~~~~~i 508 (527)
+++++++++.+
T Consensus 67 ~~~~Ig~~~~v 77 (104)
T cd04651 67 KNVVIPDGVVI 77 (104)
T ss_pred CCCEECCCCEE
Confidence 33333333333
No 128
>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.03 E-value=1.5e-09 Score=108.48 Aligned_cols=139 Identities=14% Similarity=0.205 Sum_probs=63.0
Q ss_pred CCCCCCCCCCccCCCeeeec-eee-eeeEECCCCEEcc-eeEe-ecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhh
Q 009720 382 DPKTPFYTSPRFLPPTKIDN-CRI-KDAIISHGCFLRE-CTVE-HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASL 457 (527)
Q Consensus 382 ~~~~~i~~~~~~~~p~~i~~-~~i-~~s~I~~g~~I~~-~~i~-~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~ 457 (527)
+|.+.+.+++.+..++.|.+ |.| .++.||++|.|++ +.|. ++.||++++|++++.|+.... +-.|..+ +....
T Consensus 3 hp~a~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~pq--~~~~~g~-~~~v~ 79 (255)
T PRK12461 3 HPTAVIDPSAKLGSGVEIGPFAVIGANVEIGDGTWIGPHAVILGPTRIGKNNKIHQGAVVGDEPQ--DFTYKGE-ESRLE 79 (255)
T ss_pred CCCCEECCCCEECCCCEECCCCEECCCCEECCCcEEccCCEEeCCCEECCCCEEccCcEeCCCCc--cccccCc-cceeE
Confidence 34444444455545555543 333 3456666666663 3332 455555555555555542100 0001111 01111
Q ss_pred hcCCccceEeCCCcEEee-eEEcCCCEECCCcEEeCCCCcCCCccCCCceEEecCe-----EEEccCCEeCCCcc
Q 009720 458 LAEGKVPIGVGRNTKIRN-CIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGI-----TIIMEKATIEDGMV 526 (527)
Q Consensus 458 ~~~~~~~~~Ig~~~~I~~-~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g~-----~vi~~~~~I~~g~v 526 (527)
++++ +.|++++.|.+ +.++.+++||.++.|.+...+...+.+++++.|..+. ++|++++.|+.+++
T Consensus 80 IG~~---~~I~e~vtI~~gt~~g~~t~IG~~~~i~~~~~I~hd~~IG~~v~i~~~~~i~g~v~Igd~a~Ig~~a~ 151 (255)
T PRK12461 80 IGDR---NVIREGVTIHRGTKGGGVTRIGNDNLLMAYSHVAHDCQIGNNVILVNGALLAGHVTVGDRAIISGNCL 151 (255)
T ss_pred ECCc---eEECCccEEecCcccCCcEEEcccceeccCcEECCCCEECCCcEECCCCccCCceEECCCeEEeCCCE
Confidence 2222 55555555542 2233445555555555444454455555555554332 45667776666654
No 129
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.01 E-value=1.1e-09 Score=118.03 Aligned_cols=66 Identities=23% Similarity=0.393 Sum_probs=44.8
Q ss_pred eeEECCCCEEcc-eeEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCcEEe-eeEEcCCCE
Q 009720 406 DAIISHGCFLRE-CTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR-NCIIDKNVK 483 (527)
Q Consensus 406 ~s~I~~g~~I~~-~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~-~~iI~~~~~ 483 (527)
++.||++|.|++ +.|.+|+||++|+|. ++.+.+++++.. +.||++++|. +++|+++++
T Consensus 273 ~~~ig~~~~I~~~~~i~~s~Ig~~~~I~-~~~v~~sii~~~-------------------~~ig~~~~i~~~~~ig~~~~ 332 (448)
T PRK14357 273 KTRIGEDCEIGPMTRIVDCEIGNNVKII-RSECEKSVIEDD-------------------VSVGPFSRLREGTVLKKSVK 332 (448)
T ss_pred eeEECCCcEECCCceecccEECCCCEEe-eeEEEEEEEeCC-------------------cEECCCcEECCcccccCCcE
Confidence 567777777774 666777777777774 456677777666 6667777664 467777777
Q ss_pred ECCCcEEe
Q 009720 484 IGKDVVIV 491 (527)
Q Consensus 484 Ig~~~~i~ 491 (527)
||+++.+.
T Consensus 333 Ig~~~~i~ 340 (448)
T PRK14357 333 IGNFVEIK 340 (448)
T ss_pred ecCceeee
Confidence 77666554
No 130
>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.
Probab=99.01 E-value=5.7e-09 Score=96.26 Aligned_cols=88 Identities=20% Similarity=0.404 Sum_probs=65.1
Q ss_pred eeEECCCCEEcc-eeEe----ecEEcCCcEECCCCEEeee----EEeCCcccCchhhHHhhhcCCccceEeCCCcEEeee
Q 009720 406 DAIISHGCFLRE-CTVE----HSIVGERSRLDYGVELKDT----VMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNC 476 (527)
Q Consensus 406 ~s~I~~g~~I~~-~~i~----~svIg~~~~I~~~~~I~~~----~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~ 476 (527)
+..||++|.|++ +.|. .++||++|.|+++|+|.++ ++++.+ +.|+.++.|.++
T Consensus 17 ~v~ig~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~------------------~~I~~~~~i~~~ 78 (153)
T cd04645 17 DVTLGEGSSVWFGAVLRGDVNPIRIGERTNIQDGSVLHVDPGYPTIIGDN------------------VTVGHGAVLHGC 78 (153)
T ss_pred eEEECCCcEEcCCeEEECCCCceEECCCCEECCCcEEecCCCCCeEEcCC------------------cEECCCcEEeee
Confidence 566677777764 4443 3599999999999999885 344443 899999999999
Q ss_pred EEcCCCEECCCcEEeCCCCcCCCccCCCceEEecC
Q 009720 477 IIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSG 511 (527)
Q Consensus 477 iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g 511 (527)
+|++++.|+.++.+.....+++++.++.+..+..+
T Consensus 79 ~Ig~~~~Ig~~~~v~~~~~ig~~~~ig~~~~v~~~ 113 (153)
T cd04645 79 TIGDNCLIGMGAIILDGAVIGKGSIVAAGSLVPPG 113 (153)
T ss_pred EECCCCEECCCCEEcCCCEECCCCEECCCCEECCC
Confidence 99999999999999866555555555555444443
No 131
>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition. It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.
Probab=99.00 E-value=6e-09 Score=96.40 Aligned_cols=88 Identities=15% Similarity=0.292 Sum_probs=65.0
Q ss_pred eeEECCCCEEcc-eeEee----cEEcCCcEECCCCEEeee----EEeCCcccCchhhHHhhhcCCccceEeCCCcEEeee
Q 009720 406 DAIISHGCFLRE-CTVEH----SIVGERSRLDYGVELKDT----VMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNC 476 (527)
Q Consensus 406 ~s~I~~g~~I~~-~~i~~----svIg~~~~I~~~~~I~~~----~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~ 476 (527)
++.||++|.|++ +.|.. .+||++|.|+++|.|... ++++++ +.|++++.|.++
T Consensus 18 ~v~iG~~~~I~~~a~I~~~~~~i~Ig~~~~Ig~~~~I~~~~~~~~~Ig~~------------------~~I~~~~~i~~~ 79 (154)
T cd04650 18 DVVIGELTSVWHYAVIRGDNDSIYIGKYSNVQENVSIHTDHGYPTEIGDY------------------VTIGHNAVVHGA 79 (154)
T ss_pred eEEECCCCEEcCCeEEEcCCCcEEECCCCEECCCCEEEeCCCCCeEECCC------------------CEECCCcEEECc
Confidence 566777777763 44543 499999999999999863 333333 899999999999
Q ss_pred EEcCCCEECCCcEEeCCCCcCCCccCCCceEEecC
Q 009720 477 IIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSG 511 (527)
Q Consensus 477 iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g 511 (527)
+|++++.|+.++.+.+...+++...++.++.+..|
T Consensus 80 ~Ig~~~~Ig~~~~i~~~~~Ig~~~~vg~~~~v~~g 114 (154)
T cd04650 80 KVGNYVIVGMGAILLNGAKIGDHVIIGAGAVVTPG 114 (154)
T ss_pred EECCCCEEcCCCEEeCCCEECCCCEECCCCEECCC
Confidence 99999999999999876655555555555444443
No 132
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.00 E-value=1.2e-09 Score=118.21 Aligned_cols=80 Identities=14% Similarity=0.287 Sum_probs=55.3
Q ss_pred cCCCeeeec-eeee-eeEECCCCEEcc-eeEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCC
Q 009720 393 FLPPTKIDN-CRIK-DAIISHGCFLRE-CTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGR 469 (527)
Q Consensus 393 ~~~p~~i~~-~~i~-~s~I~~g~~I~~-~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~ 469 (527)
+.+++.|++ |.|. +++||++|+|++ +.|.+|+||++|.|+++|.|+++++..+ +.||+
T Consensus 268 ig~~~~I~~~~~i~~~v~ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~ig~~-------------------~~Ig~ 328 (456)
T PRK09451 268 HGRDVEIDTNVIIEGNVTLGNRVKIGAGCVLKNCVIGDDCEISPYSVVEDANLGAA-------------------CTIGP 328 (456)
T ss_pred ECCCCEEcCCeEEecCcEECCCCEECCCceEecCEEcCCCEEcCCEEEeCCccCCC-------------------cEecC
Confidence 444566643 5564 688999999984 7888999999999999999988766655 55555
Q ss_pred CcEEe-eeEEcCCCEECCCcEEe
Q 009720 470 NTKIR-NCIIDKNVKIGKDVVIV 491 (527)
Q Consensus 470 ~~~I~-~~iI~~~~~Ig~~~~i~ 491 (527)
++.|. ++.|++++.||.++.|.
T Consensus 329 ~~~i~~~~~i~~~~~ig~~~~i~ 351 (456)
T PRK09451 329 FARLRPGAELAEGAHVGNFVEMK 351 (456)
T ss_pred ceEEeCCCEECCCceeccceeee
Confidence 55554 55555555555554443
No 133
>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional
Probab=99.00 E-value=1.7e-09 Score=112.82 Aligned_cols=61 Identities=23% Similarity=0.210 Sum_probs=27.6
Q ss_pred eEeCCCcEEe-----eeEEcCCCEECCCcEEeCCCCcCCCccCCCceEEecCeEEEccCCEeCCCcc
Q 009720 465 IGVGRNTKIR-----NCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMV 526 (527)
Q Consensus 465 ~~Ig~~~~I~-----~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g~~vi~~~~~I~~g~v 526 (527)
+.||+++.|. +++||++++|+.+|.|+....+++++.+..++.|..+ ++||+++.|+.++.
T Consensus 210 v~IGa~~~I~~~~~~~t~Ig~~~~i~~~v~I~~~~~IG~~~~i~~~~~i~~~-~~iG~~~~ig~~~~ 275 (343)
T PRK00892 210 VEIGANTTIDRGALDDTVIGEGVKIDNLVQIAHNVVIGRHTAIAAQVGIAGS-TKIGRYCMIGGQVG 275 (343)
T ss_pred cEECCCcEEecCccccceeCCCCEEeCCeEEccCCEECCCcEEeeeeeecCC-CEECCceEECCCCE
Confidence 4555555553 3444444444444444433333333333333333222 34566666655554
No 134
>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase. It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.99 E-value=2.9e-09 Score=87.23 Aligned_cols=64 Identities=20% Similarity=0.312 Sum_probs=54.1
Q ss_pred eEECCCCEEcceeEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCcEEeeeEEcCCCEECC
Q 009720 407 AIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGK 486 (527)
Q Consensus 407 s~I~~g~~I~~~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~iI~~~~~Ig~ 486 (527)
+.|++++.|+ .+++||++|+|+++|+|++++++.+ +.|++++.|.+|++++++.|++
T Consensus 6 ~~I~~~~~i~----~~~~Ig~~~~Ig~~~~i~~sii~~~-------------------~~i~~~~~i~~sii~~~~~v~~ 62 (80)
T cd05824 6 AKIGKTAKIG----PNVVIGPNVTIGDGVRLQRCVILSN-------------------STVRDHSWVKSSIVGWNSTVGR 62 (80)
T ss_pred CEECCCCEEC----CCCEECCCCEECCCcEEeeeEEcCC-------------------CEECCCCEEeCCEEeCCCEECC
Confidence 4455566555 3589999999999999999999987 8999999999999999999999
Q ss_pred CcEEeCC
Q 009720 487 DVVIVNK 493 (527)
Q Consensus 487 ~~~i~~~ 493 (527)
++.+.+.
T Consensus 63 ~~~~~~~ 69 (80)
T cd05824 63 WTRLENV 69 (80)
T ss_pred CcEEecC
Confidence 9988653
No 135
>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc. This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=98.99 E-value=4.7e-09 Score=101.32 Aligned_cols=55 Identities=18% Similarity=0.315 Sum_probs=28.6
Q ss_pred CCCCCCCCCccCCCeeeec-eee-eeeEECCCCEEcc-eeEee-cEEcCCcEECCCCEE
Q 009720 383 PKTPFYTSPRFLPPTKIDN-CRI-KDAIISHGCFLRE-CTVEH-SIVGERSRLDYGVEL 437 (527)
Q Consensus 383 ~~~~i~~~~~~~~p~~i~~-~~i-~~s~I~~g~~I~~-~~i~~-svIg~~~~I~~~~~I 437 (527)
+...+...+.+.+.+.|.+ +.| .++.|+++|+|++ +.|.+ ++||++|.|+++++|
T Consensus 12 ~~~~i~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i 70 (205)
T cd03352 12 PNAVIGEGVVIGDGVVIGPGVVIGDGVVIGDDCVIHPNVTIYEGCIIGDRVIIHSGAVI 70 (205)
T ss_pred CCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCEECCCcEECCCCEE
Confidence 3344444444445555533 444 4566666666663 44433 555555555555555
No 136
>cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes. This family includes UDP-Glucose Pyrophosphorylase (UDPase) and UDPGlcNAc pyrophosphorylase enzymes. The two enzymes share significant sequence and structure similarity. UDP-Glucose Pyrophosphorylase catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans . UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1P from PPi and UDPGlcNAc, which is a key precursor of N- and O-linked glycosylations and is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker anchoring a variety o
Probab=98.99 E-value=4e-08 Score=98.96 Aligned_cols=214 Identities=14% Similarity=0.153 Sum_probs=128.0
Q ss_pred eEEEEEeCCCCCccccCccCCCccceeeC---CcchhHHHHHHHHHH--------cCCCEEEEEeccCchhHHHHHHHhh
Q 009720 95 VAAIILGGGAGTKLFPLTLRAATPAVPVA---GCYRLIDIPMSNCIN--------SGINKIFVLTQFNSASLNRHIARTY 163 (527)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PKpLlpIg---Gk~pLId~~l~~l~~--------~Gi~~I~Iv~~~~~~~i~~hl~~~y 163 (527)
+.+||||||.||||+ ...||+|+||+ |+ |+|++.++.+.. .+|..+++...+..+++.+|+.+.-
T Consensus 1 va~viLaGG~GtRLg---~~~PK~~~~i~~~~gk-~~l~~~~~~i~~~~~~~~~~~~Ip~~imts~~t~~~t~~~l~~~~ 76 (266)
T cd04180 1 VAVVLLAGGLGTRLG---KDGPKSSTDVGLPSGQ-CFLQLIGEKILTLQEIDLYSCKIPEQLMNSKYTHEKTQCYFEKIN 76 (266)
T ss_pred CEEEEECCCCccccC---CCCCceeeeecCCCCC-cHHHHHHHHHHHHHHHhhcCCCCCEEEEcCchhHHHHHHHHHHcC
Confidence 368999999999995 78999999999 99 999999999986 3466676666777888888886321
Q ss_pred ccCC--cccCCCeEEEecccc-C-CCCCC--CCcccChHHHHHHHH--HHHHhhhcCCCCeEEEEcCceee-cC-CHHHH
Q 009720 164 FGNG--TNFGDGFVEVLAATQ-T-PGESG--KNWFQGTADAVRQFT--WVFEDAKNRNIENVAILCGDHLY-RM-DYMDF 233 (527)
Q Consensus 164 ~~~~--~~~~~~~V~vl~~~q-~-~~~~~--~~~~~Gta~al~~a~--~~l~~~~~~~~e~~Lvl~gD~l~-~~-dl~~l 233 (527)
+... ..|.++.+..+.... . ..+.. .-.+-|.+|.+.... ..++++...+.+.+.+.+.|++. .. |. .+
T Consensus 77 ~~~~~v~~f~Q~~~P~~~~~~~~~~~~~~~~~~~P~GnGdi~~~L~~sglLd~l~~~G~~yi~v~~vDN~la~v~DP-~~ 155 (266)
T cd04180 77 QKNSYVITFMQGKLPLKNDDDARDPHNKTKCHLFPCGHGDVVLALIHSGHLNKLLEKGYRYIHFIGVDNLLVKVADP-LF 155 (266)
T ss_pred CCCCceEEEEeCCceEEeCCCCcccCCCCceeeccCCcHHHHHHHHHCChHHHHHHcCCEEEEEEccCccCccccCH-HH
Confidence 1111 011111111111110 0 00001 112358887665442 34555555778899999999855 44 43 35
Q ss_pred HHHHHHcCCcEEEEEEEcCCCCCCCceEEEECCCCc--eEEEEecCCcccccc---ccc-cccccCCCccccccCCceee
Q 009720 234 IQSHVDRDADITISCAAVGESRASDYGLVKIDNMGR--IAQFAEKPSGANLKA---MQV-DTSLLGFSPQEARKCPYVAS 307 (527)
Q Consensus 234 l~~h~~~~ad~tv~~~~~~~~~~~~~g~v~~D~~g~--V~~~~EKp~~~~~~~---~~v-~~~~~~~~~~~~~~~~~l~~ 307 (527)
+-.+...+.++.+-+.+....+ ..-|.+...++|+ +.++.|=|....... ..+ +++ .......+
T Consensus 156 lG~~~~~~~~~~~kvv~K~~~d-~k~G~~~~~~~g~~~~vEyse~~~~~~~~~~~~~~~~~~~---------~~~~~~~n 225 (266)
T cd04180 156 IGIAIQNRKAINQKVVPKTRNE-ESGGYRIANINGRVQLLEYDQIKKLLKQKMVNNQIPKDID---------DAPFFLFN 225 (266)
T ss_pred HHHHHHcCCCEEEEEEECCCCC-CeEEEEEEecCCCEEEEEeccCCHHHHhccccccCcCCCC---------ceeeccce
Confidence 6677777888887666554422 2345544422354 555555443221100 000 011 11235679
Q ss_pred eeEEEEeHHHHHHHHH
Q 009720 308 MGVYVFKKDVLFKLLR 323 (527)
Q Consensus 308 ~GIYif~~~iL~~ll~ 323 (527)
+....|+.+.+.++++
T Consensus 226 ~~~~~~~l~~l~~~~~ 241 (266)
T cd04180 226 TNNLINFLVEFKDRVD 241 (266)
T ss_pred EEEEEEEHHHHHHHHH
Confidence 9999999999987765
No 137
>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase. This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132).
Probab=98.99 E-value=3.8e-09 Score=105.71 Aligned_cols=101 Identities=16% Similarity=0.129 Sum_probs=57.3
Q ss_pred eeEECCCCEEcc-eeE-eecEEcCCcEECCCCEEee------------eEEeCCcccCchhhHHhhhcCCccceEeCCCc
Q 009720 406 DAIISHGCFLRE-CTV-EHSIVGERSRLDYGVELKD------------TVMLGADYYQTESEIASLLAEGKVPIGVGRNT 471 (527)
Q Consensus 406 ~s~I~~g~~I~~-~~i-~~svIg~~~~I~~~~~I~~------------~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~ 471 (527)
++.|+++|+|++ +.| .+++||++|+|++++.|.. .+.+|++ +.|++++
T Consensus 28 ~v~Ig~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~------------------~~I~~~~ 89 (254)
T TIGR01852 28 GVKIGDGVELKSHVVILGHTTIGEGTRIFPGAVIGGVPQDLKYKGERTELIIGDN------------------NTIREFV 89 (254)
T ss_pred CCEECCCCEECCCCEEeeeEEECCCCEECCCcEeCCCCcceeecCccceEEECCC------------------CEECCCC
Confidence 456666666664 334 3578888888888888863 3444443 6777777
Q ss_pred EEe--------eeEEcCCCEECCCcEEeCCCCcCCCccCCCceEEecCeEEEccCCEeCCCc
Q 009720 472 KIR--------NCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGM 525 (527)
Q Consensus 472 ~I~--------~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g~~vi~~~~~I~~g~ 525 (527)
.|. +++||+++.|+.++.|.....+++++.++.++.+..+ ++|++++.|+.++
T Consensus 90 ~I~~~~~~~~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~-~~Igd~~~Ig~~~ 150 (254)
T TIGR01852 90 TINRGTASGGGVTRIGNNNLLMAYSHIAHDCVVGNHVILANNATLAGH-VEVGDYAIIGGLV 150 (254)
T ss_pred EECCcccCCCCcEEECCCCEECCCCEEccCCEECCCCEECCCCEECCC-cEECCCcEEeccC
Confidence 775 4566666666666655444444444444444444333 3334444444443
No 138
>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89).
Probab=98.98 E-value=2.6e-09 Score=106.24 Aligned_cols=33 Identities=33% Similarity=0.431 Sum_probs=13.3
Q ss_pred eEEcCCCEECCCcEEeCCCCcCCCccCCCceEE
Q 009720 476 CIIDKNVKIGKDVVIVNKDDVQEADRPELGFYI 508 (527)
Q Consensus 476 ~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i 508 (527)
++|++|+.||.++.|.++..+++++.++.|++|
T Consensus 174 ViIgDnv~IGa~a~I~~GV~IG~gavIGaGavI 206 (269)
T TIGR00965 174 TIIEDNCFIGARSEIVEGVIVEEGSVISMGVFI 206 (269)
T ss_pred eEECCCCEECCCCEEcCCCEECCCCEEeCCCEE
Confidence 344444444444444443333333333333333
No 139
>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]
Probab=98.97 E-value=8.1e-10 Score=118.58 Aligned_cols=94 Identities=13% Similarity=0.303 Sum_probs=82.2
Q ss_pred CCCCCCCCccCCCeeee-ceeeeeeEECCCCEEc-ceeEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCC
Q 009720 384 KTPFYTSPRFLPPTKID-NCRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEG 461 (527)
Q Consensus 384 ~~~i~~~~~~~~p~~i~-~~~i~~s~I~~g~~I~-~~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~ 461 (527)
+..+..+..+..+|+|+ ++.|.||+||.||.|| ++.|++|.||.+|+||.||+|++++++++
T Consensus 327 ~~~v~~~~~ig~gT~Ig~g~~I~NSVIG~~c~IgsN~~I~~S~iw~~v~Igdnc~I~~aii~d~---------------- 390 (673)
T KOG1461|consen 327 SVIVGANVVIGAGTKIGSGSKISNSVIGANCRIGSNVRIKNSFIWNNVTIGDNCRIDHAIICDD---------------- 390 (673)
T ss_pred hccccceEEecccccccCCCeeecceecCCCEecCceEEeeeeeecCcEECCCceEeeeEeecC----------------
Confidence 34455666777888885 5899999999999999 79999999999999999999999999988
Q ss_pred ccceEeCCCcEE-eeeEEcCCCEECCCcEEeCCCCc
Q 009720 462 KVPIGVGRNTKI-RNCIIDKNVKIGKDVVIVNKDDV 496 (527)
Q Consensus 462 ~~~~~Ig~~~~I-~~~iI~~~~~Ig~~~~i~~~~~v 496 (527)
+.|++++.+ .+|||+-++.+|++-++..+..+
T Consensus 391 ---v~i~~~~~l~~g~vl~~~VVv~~~~~l~~ns~~ 423 (673)
T KOG1461|consen 391 ---VKIGEGAILKPGSVLGFGVVVGRNFVLPKNSKV 423 (673)
T ss_pred ---cEeCCCcccCCCcEEeeeeEeCCCccccccccc
Confidence 999999999 58999999999999988776444
No 140
>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.
Probab=98.97 E-value=3.7e-09 Score=99.06 Aligned_cols=101 Identities=22% Similarity=0.357 Sum_probs=68.5
Q ss_pred eeEECCCCEEcc-eeEe-----ecEEcCCcEECCCCEEee----eEEeCCcccCchhhHHhhhcCCccceEeCCCcEEee
Q 009720 406 DAIISHGCFLRE-CTVE-----HSIVGERSRLDYGVELKD----TVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRN 475 (527)
Q Consensus 406 ~s~I~~g~~I~~-~~i~-----~svIg~~~~I~~~~~I~~----~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~ 475 (527)
++.||++|+|++ +.|. ++.||++|.|++++.|.. .+.++.+ +.|+.++.|..
T Consensus 20 ~v~iG~~~~I~~~~~i~~~~~~~v~IG~~~~I~~~~~i~~~~~~~v~Ig~~------------------~~I~~~~~i~g 81 (167)
T cd00710 20 DVIIGDNVFVGPGASIRADEGTPIIIGANVNIQDGVVIHALEGYSVWIGKN------------------VSIAHGAIVHG 81 (167)
T ss_pred eEEECCCcEECCCcEEeCCCCCcEEECCCCEECCCeEEEecCCCCEEECCC------------------ceECCCCEEeC
Confidence 445555555553 3332 467888888888888842 2333333 77777777765
Q ss_pred -eEEcCCCEECCCcEEeCCCCcCCCccCCCceEEecCeEEEccCCEeCCCccC
Q 009720 476 -CIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 527 (527)
Q Consensus 476 -~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g~~vi~~~~~I~~g~vi 527 (527)
|+||+++.||.++.|.+ ..+++++.++.++.|. + ..|++++.|++|+++
T Consensus 82 ~~~Ig~~~~Ig~~~~I~~-~~Ig~~~~Ig~~s~i~-~-~~i~~~~~v~~~~~v 131 (167)
T cd00710 82 PAYIGDNCFIGFRSVVFN-AKVGDNCVIGHNAVVD-G-VEIPPGRYVPAGAVI 131 (167)
T ss_pred CEEECCCCEECCCCEEEC-CEECCCCEEcCCCEEe-C-CEeCCCCEECCCCEE
Confidence 88899999998888874 4577777777777774 3 456788888777653
No 141
>PRK14500 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MoaC/MobA; Provisional
Probab=98.93 E-value=2.1e-08 Score=104.37 Aligned_cols=109 Identities=9% Similarity=0.078 Sum_probs=77.1
Q ss_pred ceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCcccCCC
Q 009720 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (527)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~ 173 (527)
.+.+||||||+|+||+ .+|.|+|+.|+ ||++|+++.+... +++|+|+++... . ..+ . . .
T Consensus 160 ~i~~IILAGGkSsRMG-----~dKaLL~~~Gk-pLl~~~ie~l~~~-~~~ViVv~~~~~--~-----~~~-~----~--~ 218 (346)
T PRK14500 160 PLYGLVLTGGKSRRMG-----KDKALLNYQGQ-PHAQYLYDLLAKY-CEQVFLSARPSQ--W-----QGT-P----L--E 218 (346)
T ss_pred CceEEEEeccccccCC-----CCcccceeCCc-cHHHHHHHHHHhh-CCEEEEEeCchH--h-----hhc-c----c--c
Confidence 6789999999999996 59999999999 9999999888654 889988886421 0 111 0 0 0
Q ss_pred eEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceee-cCC-HHHHHHHH
Q 009720 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY-RMD-YMDFIQSH 237 (527)
Q Consensus 174 ~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~-~~d-l~~ll~~h 237 (527)
.+.++.... +.+|...+|+.++.... .+.++++.||+-+ ..+ +..+++.+
T Consensus 219 ~v~~I~D~~--------~~~GPlagI~aaL~~~~------~~~~lVl~cDmP~l~~~~l~~L~~~~ 270 (346)
T PRK14500 219 NLPTLPDRG--------ESVGPISGILTALQSYP------GVNWLVVACDLAYLNSETVEKLLAHY 270 (346)
T ss_pred CCeEEeCCC--------CCCChHHHHHHHHHhCC------CCCEEEEECCcCCCCHHHHHHHHHhh
Confidence 133433222 13599999999987653 3578999999954 444 56666654
No 142
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.93 E-value=2.9e-09 Score=115.21 Aligned_cols=66 Identities=21% Similarity=0.427 Sum_probs=43.5
Q ss_pred eeEECCCCEEc-ceeEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCcEEe-eeEEcCCCE
Q 009720 406 DAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR-NCIIDKNVK 483 (527)
Q Consensus 406 ~s~I~~g~~I~-~~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~-~~iI~~~~~ 483 (527)
++.||++|.|+ ++.|.+|+||++|+|+ ++.+.+++++.+ +.||+++.|. +|+||++++
T Consensus 283 ~~~Ig~~~~I~~~~~i~~~~ig~~~~I~-~~~i~~~~ig~~-------------------~~Ig~~~~i~~~~~Ig~~~~ 342 (458)
T PRK14354 283 NTVIGEDCVIGPGSRIVDSTIGDGVTIT-NSVIEESKVGDN-------------------VTVGPFAHLRPGSVIGEEVK 342 (458)
T ss_pred ceEECCCCEECCCcEEeccEECCCCEEE-EEEEeCCEECCC-------------------cEECCceEecCCCEEeCCcE
Confidence 46777777777 3677777777777777 355666666555 5666666665 566666666
Q ss_pred ECCCcEEe
Q 009720 484 IGKDVVIV 491 (527)
Q Consensus 484 Ig~~~~i~ 491 (527)
|+.++.|.
T Consensus 343 i~~~~~i~ 350 (458)
T PRK14354 343 IGNFVEIK 350 (458)
T ss_pred ECCceEEe
Confidence 66666554
No 143
>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain. The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.
Probab=98.93 E-value=1.9e-09 Score=101.76 Aligned_cols=28 Identities=14% Similarity=0.313 Sum_probs=12.9
Q ss_pred eEeCCCcEEe-eeEEcCCCEECCCcEEeC
Q 009720 465 IGVGRNTKIR-NCIIDKNVKIGKDVVIVN 492 (527)
Q Consensus 465 ~~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~ 492 (527)
+.|+.++.|. +|+|++++.||.++.+..
T Consensus 139 ~~i~~~~~i~~~~~ig~~~~ig~~~~v~~ 167 (197)
T cd03360 139 VHIAPGVVLSGGVTIGEGAFIGAGATIIQ 167 (197)
T ss_pred CEECCCCEEcCCcEECCCCEECCCCEEcC
Confidence 4444444443 344555555555544443
No 144
>PLN02474 UTP--glucose-1-phosphate uridylyltransferase
Probab=98.93 E-value=5.3e-07 Score=96.62 Aligned_cols=350 Identities=13% Similarity=0.184 Sum_probs=196.6
Q ss_pred CCceEEEEEeCCCCCccccCccCCCccceeeC-CcchhHHHHHHHHHHc----CCC-EEEEEeccC-chhHHHHHHHhh-
Q 009720 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVA-GCYRLIDIPMSNCINS----GIN-KIFVLTQFN-SASLNRHIARTY- 163 (527)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIg-Gk~pLId~~l~~l~~~----Gi~-~I~Iv~~~~-~~~i~~hl~~~y- 163 (527)
..++.+|.||||.||||+ ..-||.++|+. |+ .++|..++++... |.+ ..+|.+.++ .++..+++. +|
T Consensus 77 L~k~avlkLnGGlGTrmG---~~~PKs~i~v~~~~-sfldl~~~qi~~l~~~~g~~vPl~iMtS~~T~~~T~~~l~-k~~ 151 (469)
T PLN02474 77 LDKLVVLKLNGGLGTTMG---CTGPKSVIEVRNGL-TFLDLIVIQIENLNKKYGCNVPLLLMNSFNTHDDTQKIVE-KYT 151 (469)
T ss_pred HhcEEEEEecCCcccccC---CCCCceeEEcCCCC-cHHHHHHHHHHHHHHHcCCCceEEEECCCchhHHHHHHHH-HcC
Confidence 478999999999999997 46899999994 56 8999998887653 443 457788775 455777775 44
Q ss_pred -ccCCc-ccCCCeEEEecc-ccC----CC-CCCCCcc-cChHHHHHHHH--HHHHhhhcCCCCeEEEEcCceeecCCHHH
Q 009720 164 -FGNGT-NFGDGFVEVLAA-TQT----PG-ESGKNWF-QGTADAVRQFT--WVFEDAKNRNIENVAILCGDHLYRMDYMD 232 (527)
Q Consensus 164 -~~~~~-~~~~~~V~vl~~-~q~----~~-~~~~~~~-~Gta~al~~a~--~~l~~~~~~~~e~~Lvl~gD~l~~~dl~~ 232 (527)
+.... -|.+..+.-+.. ... .+ .....|+ -|.++...... ..++++...+.+.+.+.+.|++...-=-.
T Consensus 152 ~~~~~i~~F~Q~~~P~l~~~~~~p~~~~~~~~~~~~~P~GhGd~y~aL~~sG~Ld~l~~~G~eyifv~nvDNLga~vDp~ 231 (469)
T PLN02474 152 NSNIEIHTFNQSQYPRVVADDFVPWPSKGKTDKDGWYPPGHGDVFPSLMNSGKLDALLSQGKEYVFIANSDNLGAIVDLK 231 (469)
T ss_pred CCccceEEEecCceeeEecCCCCcccccCCCCcceeeeCCCchHHHHHHhCChHHHHHhcCCEEEEEEecCccccccCHH
Confidence 21111 111111111111 000 00 0011243 57776554332 23555556778999999999976432246
Q ss_pred HHHHHHHcCCcEEEEEEEcCCCCCCCce-EEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEE
Q 009720 233 FIQSHVDRDADITISCAAVGESRASDYG-LVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVY 311 (527)
Q Consensus 233 ll~~h~~~~ad~tv~~~~~~~~~~~~~g-~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIY 311 (527)
++..|.++++++++=+.+...+.. +-| ++..|..-++.++.|-|.....+ .. ....-.+.+++.+
T Consensus 232 ~lg~~~~~~~e~~~ev~~Kt~~d~-kgG~l~~~dgk~~lvEysqvp~e~~~~-f~------------~~~kf~~fNtnn~ 297 (469)
T PLN02474 232 ILNHLIQNKNEYCMEVTPKTLADV-KGGTLISYEGKVQLLEIAQVPDEHVNE-FK------------SIEKFKIFNTNNL 297 (469)
T ss_pred HHHHHHhcCCceEEEEeecCCCCC-CccEEEEECCEEEEEEEecCCHHHHHh-hc------------ccccceeeeeeeE
Confidence 788888899998887765443222 234 34444444577777766543210 00 0012357899999
Q ss_pred EEeHHHHHHHHHhhCC--------CC-C-----chhhhhHHhhhhc-CceEEEEec-ceEEecCCHHHHHHHHHHhhccC
Q 009720 312 VFKKDVLFKLLRWRYP--------TS-N-----DFGSEIIPAAIME-HDVQAYIFR-DYWEDIGTIKSFYEANMALTKES 375 (527)
Q Consensus 312 if~~~iL~~ll~~~~~--------~~-~-----d~~~dii~~li~~-~~V~~~~~~-g~w~dIgt~~d~~~An~~ll~~~ 375 (527)
.|+-+.|.++++.... .. + .|++ .+-.+++- .+..++.+. .-+.-+.+..|++-+..++....
T Consensus 298 w~~L~~l~~~~~~~~l~~~~I~n~k~~~g~kv~q~Et-~ig~ai~~f~~~~~v~VpR~rF~PVK~~~dll~~rsdly~l~ 376 (469)
T PLN02474 298 WVNLKAIKRLVEADALKMEIIPNPKEVDGVKVLQLET-AAGAAIRFFDNAIGINVPRSRFLPVKATSDLLLVQSDLYTLV 376 (469)
T ss_pred EEEHHHHHHHhhcCCCCceeecCCCCCCCeeEEEeHH-HHHHHHHhCCCceEEEEchhhccCCCCCCCHHHHHHHHHHhc
Confidence 9999999887653210 00 0 0111 11122222 344445543 23667777778877777665443
Q ss_pred CCCccCCCCCCCCCCCccCCCeeeec--eeeee--eEE-CCCCEEcceeEeecEEcCCcEECCCCEEeeeEEeCCcccCc
Q 009720 376 PAFHFYDPKTPFYTSPRFLPPTKIDN--CRIKD--AII-SHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQT 450 (527)
Q Consensus 376 ~~~~~~~~~~~i~~~~~~~~p~~i~~--~~i~~--s~I-~~g~~I~~~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~ 450 (527)
.......+.....+.+ ..++++ .+|.+ ..+ +--..+ +| .+-.|--++..|.|+++++++++.+.
T Consensus 377 ~~~l~~~~~~~~~~~p----~IeL~~~f~~v~~f~~rf~~iPsl~-~~--d~LtV~Gdv~fG~~v~l~G~v~i~~~---- 445 (469)
T PLN02474 377 DGFVIRNKARTNPSNP----SIELGPEFKKVANFLSRFKSIPSIV-EL--DSLKVSGDVWFGSGIVLKGKVTITAK---- 445 (469)
T ss_pred cCeEEecCcccCCCCC----cEEECcccccHHhHHHhcCCCCCcc-cC--CeEEEeeeeEECCCcEEEEEEEEEcC----
Confidence 2221111111111111 122321 01100 000 000111 11 44567778999999999999988773
Q ss_pred hhhHHhhhcCCccceEeCCCcEEeeeEEcCCC
Q 009720 451 ESEIASLLAEGKVPIGVGRNTKIRNCIIDKNV 482 (527)
Q Consensus 451 ~~~~~~~~~~~~~~~~Ig~~~~I~~~iI~~~~ 482 (527)
+..|..|.+|+++.|++|-.+.
T Consensus 446 ----------~~~~~~ip~g~~l~~~~~~~~~ 467 (469)
T PLN02474 446 ----------SGVKLEIPDGAVLENKDINGPE 467 (469)
T ss_pred ----------CCCeeecCCCcEecceeecccC
Confidence 4455889999999988887664
No 145
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.92 E-value=4.6e-09 Score=113.81 Aligned_cols=76 Identities=16% Similarity=0.269 Sum_probs=58.2
Q ss_pred eeEECCCCEEcceeEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCcEEeeeEEcCCCEEC
Q 009720 406 DAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIG 485 (527)
Q Consensus 406 ~s~I~~g~~I~~~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~iI~~~~~Ig 485 (527)
++.|+++|.|+ .+++||++|+|+++|+|++++++.+ +.|+++++|.+|+|++++.||
T Consensus 274 ~~~I~~~~~I~----~~~~Ig~~~~I~~~~~I~~~~Ig~~-------------------~~I~~~~~i~~~~i~~~~~ig 330 (459)
T PRK14355 274 DTTIYPGVCIS----GDTRIGEGCTIEQGVVIKGCRIGDD-------------------VTVKAGSVLEDSVVGDDVAIG 330 (459)
T ss_pred CCEEeCCcEEe----CCCEECCCCEECCCCEEeCCEEcCC-------------------CEECCCeEEeCCEECCCCEEC
Confidence 45555555554 3589999999999999999888777 899999999999999998888
Q ss_pred CCcEEeCCCCcCCCccCCC
Q 009720 486 KDVVIVNKDDVQEADRPEL 504 (527)
Q Consensus 486 ~~~~i~~~~~v~~~~~~~~ 504 (527)
+++.|.....+.+++.+++
T Consensus 331 ~~~~i~~~~~i~~~~~ig~ 349 (459)
T PRK14355 331 PMAHLRPGTELSAHVKIGN 349 (459)
T ss_pred CCCEECCCCEeCCCCEECC
Confidence 8777776555555544443
No 146
>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E. coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.
Probab=98.92 E-value=7.7e-09 Score=95.66 Aligned_cols=98 Identities=13% Similarity=0.270 Sum_probs=71.1
Q ss_pred eeEECCCCEEcceeEeecEEcCCcEECCCCEEee---eEEeCCcccCchhhHHhhhcCCccceEeCCCcEE-----eeeE
Q 009720 406 DAIISHGCFLRECTVEHSIVGERSRLDYGVELKD---TVMLGADYYQTESEIASLLAEGKVPIGVGRNTKI-----RNCI 477 (527)
Q Consensus 406 ~s~I~~g~~I~~~~i~~svIg~~~~I~~~~~I~~---~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I-----~~~i 477 (527)
++.|.++++|.. ++.||++|.|+++|.|.. .+.++++ +.|+++|.| .+|+
T Consensus 6 ~~~i~~~a~i~g----~v~IG~~~~I~~~~~i~~~~~~i~IG~~------------------~~Ig~~~~I~~~~~~~~~ 63 (155)
T cd04745 6 SSFVHPTAVLIG----DVIIGKNCYIGPHASLRGDFGRIVIRDG------------------ANVQDNCVIHGFPGQDTV 63 (155)
T ss_pred CeEECCCCEEEc----cEEECCCCEECCCcEEeCCCCcEEECCC------------------CEECCCCEEeecCCCCeE
Confidence 345555555542 467888888888888875 2555554 888888888 5688
Q ss_pred EcCCCEECCCcEEeCCCCcCCCccCCCceEEecCeEEEccCCEeCCCccC
Q 009720 478 IDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 527 (527)
Q Consensus 478 I~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g~~vi~~~~~I~~g~vi 527 (527)
|++++.|+.++++.+ ..+++.+.++.+++|.+| ++|+++++|+++++|
T Consensus 64 Ig~~~~Ig~~~~i~~-~~Ig~~~~Ig~~~~I~~g-~~Ig~~~~Ig~~s~v 111 (155)
T cd04745 64 LEENGHIGHGAILHG-CTIGRNALVGMNAVVMDG-AVIGEESIVGAMAFV 111 (155)
T ss_pred EcCCCEECCCcEEEC-CEECCCCEECCCCEEeCC-CEECCCCEECCCCEe
Confidence 888888888888765 467777777777777777 456788877777653
No 147
>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma. Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.91 E-value=7.2e-09 Score=84.34 Aligned_cols=74 Identities=23% Similarity=0.373 Sum_probs=63.6
Q ss_pred CCCeeee-ceeeeeeEECCCCEEc-ceeEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCc
Q 009720 394 LPPTKID-NCRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNT 471 (527)
Q Consensus 394 ~~p~~i~-~~~i~~s~I~~g~~I~-~~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~ 471 (527)
.+.+.|. ++.|.+++|+++|.|+ ++.+.+|+||++|+|+++|.|.+++++.+ +.|++++
T Consensus 3 g~~~~I~~~~~i~~s~ig~~~~Ig~~~~i~~svi~~~~~i~~~~~i~~svv~~~-------------------~~i~~~~ 63 (79)
T cd03356 3 GESTVIGENAIIKNSVIGDNVRIGDGVTITNSILMDNVTIGANSVIVDSIIGDN-------------------AVIGENV 63 (79)
T ss_pred cCCcEECCCCEEeCCEECCCCEECCCCEEeCCEEeCCCEECCCCEEECCEECCC-------------------CEECCCC
Confidence 4556664 4777789999999998 58899999999999999999999998877 8999999
Q ss_pred EEee-eEEcCCCEECC
Q 009720 472 KIRN-CIIDKNVKIGK 486 (527)
Q Consensus 472 ~I~~-~iI~~~~~Ig~ 486 (527)
.|.+ ++|+++++|+.
T Consensus 64 ~i~~~~~ig~~~~i~~ 79 (79)
T cd03356 64 RVVNLCIIGDDVVVED 79 (79)
T ss_pred EEcCCeEECCCeEECc
Confidence 9987 88888888763
No 148
>COG1043 LpxA Acyl-[acyl carrier protein]
Probab=98.90 E-value=4.9e-09 Score=100.96 Aligned_cols=62 Identities=15% Similarity=0.154 Sum_probs=43.0
Q ss_pred eEeCCCcEE-eeeEEcCCCEECCCcEEeCCCCcCCCccCCCceEEecCeEEEccCCEeCCCccC
Q 009720 465 IGVGRNTKI-RNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 527 (527)
Q Consensus 465 ~~Ig~~~~I-~~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g~~vi~~~~~I~~g~vi 527 (527)
+.||+|+-+ -+|=|..+|+||.+|+++|+..+..+..+++..+|.+. +-|.+.+.||++++|
T Consensus 107 T~IGdnnl~May~HVAHDC~iGn~~ilaNnatLAGHV~igD~aiiGG~-saVHQFvrIG~~ami 169 (260)
T COG1043 107 TRIGDNNLIMAYAHVAHDCVIGNNCILANNATLAGHVEVGDYAIIGGL-SAVHQFVRIGAHAMI 169 (260)
T ss_pred EEECCCCEEEEeeeeeccceecCcEEEecCCeEeccEEECCEEEEcCc-ceEEEEEEEcchhee
Confidence 344443333 26777788999999999999888888889888777555 444666666665543
No 149
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.88 E-value=8.1e-09 Score=111.44 Aligned_cols=80 Identities=21% Similarity=0.337 Sum_probs=51.9
Q ss_pred eeEECCCCEEc-ceeEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCcEEe-eeEEcCCCE
Q 009720 406 DAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR-NCIIDKNVK 483 (527)
Q Consensus 406 ~s~I~~g~~I~-~~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~-~~iI~~~~~ 483 (527)
++.||++|.|+ ++.|.+|+||++|+|+ ++++.++++..+ +.||.++.|. +|+|+++++
T Consensus 280 ~~~ig~~~~I~~~~~I~~~~I~~~~~I~-~~~i~~~~ig~~-------------------~~I~~~~~I~~~~~Ig~~~~ 339 (450)
T PRK14360 280 NTVIGSGCRIGPGSLIENSQIGENVTVL-YSVVSDSQIGDG-------------------VKIGPYAHLRPEAQIGSNCR 339 (450)
T ss_pred CcEECCCCEECCCcEEEEEEEcCCCEEe-eeEEeeccccCC-------------------cEECCCCEECCCCEEeCceE
Confidence 46666677776 3566666677766664 445555555544 7888888886 688888888
Q ss_pred ECCCcEEeCCCCcCCCccCCCce
Q 009720 484 IGKDVVIVNKDDVQEADRPELGF 506 (527)
Q Consensus 484 Ig~~~~i~~~~~v~~~~~~~~~~ 506 (527)
||+++.|.+. .+++++.++++.
T Consensus 340 Ig~~~~i~~~-~i~~~~~i~~~~ 361 (450)
T PRK14360 340 IGNFVEIKKS-QLGEGSKVNHLS 361 (450)
T ss_pred ECCCEEEecc-ccCCCcEeccce
Confidence 8888887642 344444433333
No 150
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.88 E-value=7.5e-09 Score=112.93 Aligned_cols=39 Identities=13% Similarity=0.167 Sum_probs=24.5
Q ss_pred eeEECCCCEEc-ceeEeecEEcCCcEECCCCEEeeeEEeCC
Q 009720 406 DAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGA 445 (527)
Q Consensus 406 ~s~I~~g~~I~-~~~i~~svIg~~~~I~~~~~I~~~~i~~~ 445 (527)
+++||++|.|+ ++.|.+|+||++|.|+. +.+.++++..+
T Consensus 289 ~v~Ig~~~~I~~~~~i~~~~Ig~~~~i~~-~~~~~~iIg~~ 328 (482)
T PRK14352 289 RTTIGEDAVVGPDTTLTDVTVGEGASVVR-THGSESEIGAG 328 (482)
T ss_pred cCEECCCCEECCCCEEecCEECCCCEEee-eeeecCEEcCC
Confidence 46677777777 36666777777777653 45555555444
No 151
>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]
Probab=98.87 E-value=5e-09 Score=106.94 Aligned_cols=90 Identities=21% Similarity=0.317 Sum_probs=80.3
Q ss_pred CCCCCCCccCCCeeee-ceeeeeeEECCCCEEcc-eeEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCc
Q 009720 385 TPFYTSPRFLPPTKID-NCRIKDAIISHGCFLRE-CTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGK 462 (527)
Q Consensus 385 ~~i~~~~~~~~p~~i~-~~~i~~s~I~~g~~I~~-~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~ 462 (527)
+-+.....+.+.|+|. ++.|+.|+||.+|.|++ +.|.+|+|.++++||+||.|++|++..+
T Consensus 329 ~l~g~d~iv~~~t~i~~~s~ik~SviG~nC~Ig~~~~v~nSilm~nV~vg~G~~IensIIg~g----------------- 391 (433)
T KOG1462|consen 329 ALVGADSIVGDNTQIGENSNIKRSVIGSNCDIGERVKVANSILMDNVVVGDGVNIENSIIGMG----------------- 391 (433)
T ss_pred eccchhhccCCCceecccceeeeeeecCCccccCCcEEEeeEeecCcEecCCcceecceeccc-----------------
Confidence 3445567788899996 68999999999999995 8999999999999999999999999887
Q ss_pred cceEeCCCcEEeeeEEcCCCEECCCcEEeCC
Q 009720 463 VPIGVGRNTKIRNCIIDKNVKIGKDVVIVNK 493 (527)
Q Consensus 463 ~~~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~ 493 (527)
+.||++++++||+||.+-++.+..+-.+.
T Consensus 392 --A~Ig~gs~L~nC~Ig~~yvVeak~~~~~e 420 (433)
T KOG1462|consen 392 --AQIGSGSKLKNCIIGPGYVVEAKGKHGGE 420 (433)
T ss_pred --ceecCCCeeeeeEecCCcEEccccccccc
Confidence 89999999999999999999977776654
No 152
>PLN02296 carbonate dehydratase
Probab=98.86 E-value=1.2e-08 Score=102.63 Aligned_cols=85 Identities=24% Similarity=0.428 Sum_probs=60.3
Q ss_pred cEEcCCcEECCCCEEeee---EEeCCcccCchhhHHhhhcCCccceEeCCCcEEe-----------eeEEcCCCEECCCc
Q 009720 423 SIVGERSRLDYGVELKDT---VMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR-----------NCIIDKNVKIGKDV 488 (527)
Q Consensus 423 svIg~~~~I~~~~~I~~~---~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~-----------~~iI~~~~~Ig~~~ 488 (527)
+.||.+|.|.++|+|... +.+|++ +.|+++|.|. +|+||+++.||.++
T Consensus 71 V~IG~~~~I~~gavI~g~~~~I~IG~~------------------~~I~d~~vI~~~~~~~~g~~~~siIG~~v~IG~~a 132 (269)
T PLN02296 71 VQVGRGSSIWYGCVLRGDVNSISVGSG------------------TNIQDNSLVHVAKTNLSGKVLPTIIGDNVTIGHSA 132 (269)
T ss_pred eEECCCCEECCCCEEEcCCCceEECCC------------------CEECCCCEEEeCCCcccCCCCCcEeCCCCEECCCc
Confidence 456666666666666543 244443 6666666663 68899999999998
Q ss_pred EEeCCCCcCCCccCCCceEEecCeEEEccCCEeCCCccC
Q 009720 489 VIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 527 (527)
Q Consensus 489 ~i~~~~~v~~~~~~~~~~~i~~g~~vi~~~~~I~~g~vi 527 (527)
+|.+ ..+++++.++.++.|.+| ++|++++.|++|++|
T Consensus 133 vI~g-~~Igd~v~IG~ga~I~~g-v~Ig~~a~IgagSvV 169 (269)
T PLN02296 133 VLHG-CTVEDEAFVGMGATLLDG-VVVEKHAMVAAGALV 169 (269)
T ss_pred eecC-CEECCCcEECCCcEECCC-eEECCCCEECCCCEE
Confidence 8865 467888888888888888 556888888888764
No 153
>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain. WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.
Probab=98.86 E-value=9.5e-09 Score=90.14 Aligned_cols=81 Identities=12% Similarity=0.199 Sum_probs=51.0
Q ss_pred eeEECCCCEEcc-eeE-eecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCcEEeeeEEcCCCE
Q 009720 406 DAIISHGCFLRE-CTV-EHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVK 483 (527)
Q Consensus 406 ~s~I~~g~~I~~-~~i-~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~iI~~~~~ 483 (527)
+++|+++|.|++ +.| .+++||++|.|++++.|.+..+.+. .+..++.+.+++|++++.
T Consensus 16 ~~~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~--------------------~~~~~~~~~~~~Ig~~~~ 75 (119)
T cd03358 16 DVKIGDNVKIQSNVSIYEGVTIEDDVFIGPNVVFTNDLYPRS--------------------KIYRKWELKGTTVKRGAS 75 (119)
T ss_pred CcEECCCcEECCCcEEeCCeEECCCcEEcCCeEEecCCCCcc--------------------ccccccccCCcEECCCcE
Confidence 577777777773 444 4577777777777777766544443 344466677777777777
Q ss_pred ECCCcEEeCCCCcCCCccCCCce
Q 009720 484 IGKDVVIVNKDDVQEADRPELGF 506 (527)
Q Consensus 484 Ig~~~~i~~~~~v~~~~~~~~~~ 506 (527)
||.++.+.+...++++..++.++
T Consensus 76 Ig~~~~v~~~~~ig~~~~i~~~~ 98 (119)
T cd03358 76 IGANATILPGVTIGEYALVGAGA 98 (119)
T ss_pred ECcCCEEeCCcEECCCCEEccCC
Confidence 77777776554444444444333
No 154
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=98.86 E-value=3.4e-08 Score=94.09 Aligned_cols=21 Identities=24% Similarity=0.022 Sum_probs=12.2
Q ss_pred ceEEecCCHHHHHHHHHHhhc
Q 009720 353 DYWEDIGTIKSFYEANMALTK 373 (527)
Q Consensus 353 g~w~dIgt~~d~~~An~~ll~ 373 (527)
.++..++.++...+....+.+
T Consensus 61 ~~iiai~~~~~~~~i~~~l~~ 81 (201)
T TIGR03570 61 DLVVAIGDNKLRRRLFEKLKA 81 (201)
T ss_pred EEEEEcCCHHHHHHHHHHHHh
Confidence 356667766666655555443
No 155
>TIGR02287 PaaY phenylacetic acid degradation protein PaaY. Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator.
Probab=98.83 E-value=1.8e-08 Score=96.61 Aligned_cols=97 Identities=14% Similarity=0.266 Sum_probs=68.1
Q ss_pred eEECCCCEEcceeEeecEEcCCcEECCCCEEee---eEEeCCcccCchhhHHhhhcCCccceEeCCCcEE-----eeeEE
Q 009720 407 AIISHGCFLRECTVEHSIVGERSRLDYGVELKD---TVMLGADYYQTESEIASLLAEGKVPIGVGRNTKI-----RNCII 478 (527)
Q Consensus 407 s~I~~g~~I~~~~i~~svIg~~~~I~~~~~I~~---~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I-----~~~iI 478 (527)
+.|++++.|. ..+.||++|.|+++|+|.. .++++.+ +.||++|+| .+|+|
T Consensus 15 ~~I~~~a~I~----G~V~IG~~~~I~~~a~I~gd~g~i~Ig~~------------------t~Ig~~~~I~~~~~~~siI 72 (192)
T TIGR02287 15 AYVHPTAVLI----GDVILGKRCYVGPLASLRGDFGRIVLKEG------------------ANIQDNCVMHGFPGQDTVV 72 (192)
T ss_pred cEECCCCEEE----eeEEECCCCEECCCcEEEccCCceEECCC------------------CEECCCeEEeccCCCCCeE
Confidence 3444444443 2467888888888888864 3555554 788888888 46888
Q ss_pred cCCCEECCCcEEeCCCCcCCCccCCCceEEecCeEEEccCCEeCCCccC
Q 009720 479 DKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 527 (527)
Q Consensus 479 ~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g~~vi~~~~~I~~g~vi 527 (527)
++++.||.+++|.+ ..+++++.++.++.+..| ++|++++.|++|++|
T Consensus 73 g~~~~Ig~~a~I~~-siIg~~~~IG~ga~I~~g-~~IG~~s~Vgags~V 119 (192)
T TIGR02287 73 EENGHVGHGAILHG-CIVGRNALVGMNAVVMDG-AVIGENSIVAASAFV 119 (192)
T ss_pred CCCCEECCCCEEcC-CEECCCCEECCCcccCCC-eEECCCCEEcCCCEE
Confidence 88888888888776 357777777777777666 556777777777653
No 156
>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.
Probab=98.83 E-value=2.6e-08 Score=90.45 Aligned_cols=33 Identities=18% Similarity=0.392 Sum_probs=14.7
Q ss_pred eEeCCCcEE-eeeEEcCCCEECCCcEEeCCCCcC
Q 009720 465 IGVGRNTKI-RNCIIDKNVKIGKDVVIVNKDDVQ 497 (527)
Q Consensus 465 ~~Ig~~~~I-~~~iI~~~~~Ig~~~~i~~~~~v~ 497 (527)
+.||.++.| .++.|++++.|++++.|.+...++
T Consensus 82 ~~Ig~~a~I~~gv~Ig~~~~Ig~g~~V~~~~~I~ 115 (139)
T cd03350 82 VFIGANCEVVEGVIVGKGAVLAAGVVLTQSTPIY 115 (139)
T ss_pred CEECCCCEECCCCEECCCCEEcCCCEEcCCeEec
Confidence 444444444 244444444444444444443333
No 157
>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.81 E-value=2.1e-08 Score=93.73 Aligned_cols=85 Identities=14% Similarity=0.166 Sum_probs=41.5
Q ss_pred ecEEcCCcEECCCCEEee---eEEeCCcccCchhhHHhhhcCCccceEeCCCcEEee-----------eEEcCCCEECCC
Q 009720 422 HSIVGERSRLDYGVELKD---TVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRN-----------CIIDKNVKIGKD 487 (527)
Q Consensus 422 ~svIg~~~~I~~~~~I~~---~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~-----------~iI~~~~~Ig~~ 487 (527)
++.||++|.|+++|.|.. .+.+|++ +.|++++.|.+ ++||+++.|+.+
T Consensus 17 ~v~IG~~~~I~~~a~I~~~~~~i~IG~~------------------~~I~~~~~I~~~~~~~~~~~~~v~IG~~~~i~~~ 78 (164)
T cd04646 17 DVTIGPGTVVHPRATIIAEAGPIIIGEN------------------NIIEEQVTIVNKKPKDPAEPKPMIIGSNNVFEVG 78 (164)
T ss_pred ceEECCCCEEcCCeEEecCCCCeEECCC------------------CEECCCcEEecCCCCCCCCCCCeEECCCCEECCC
Confidence 355666666666666542 2333433 55555555543 345555554444
Q ss_pred cEEeCCCCcCCCccCCCceEEecCeEEEccCCEeCCCcc
Q 009720 488 VVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMV 526 (527)
Q Consensus 488 ~~i~~~~~v~~~~~~~~~~~i~~g~~vi~~~~~I~~g~v 526 (527)
+.|.+ ..+++++.++.++.|..| ++|+++++|++|++
T Consensus 79 ~~i~~-~~IGd~~~Ig~~a~I~~g-v~Ig~~~~Igagsv 115 (164)
T cd04646 79 CKCEA-LKIGNNNVFESKSFVGKN-VIITDGCIIGAGCK 115 (164)
T ss_pred cEEEe-eEECCCCEEeCCCEECCC-CEECCCCEEeCCeE
Confidence 44443 334444444444444444 33355555554443
No 158
>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family. This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.
Probab=98.80 E-value=3.3e-08 Score=95.70 Aligned_cols=47 Identities=13% Similarity=0.333 Sum_probs=26.9
Q ss_pred ccCCCeeeec-eeeeeeEECCCCEEc-ceeEeecEEcCCcEECCCCEEe
Q 009720 392 RFLPPTKIDN-CRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELK 438 (527)
Q Consensus 392 ~~~~p~~i~~-~~i~~s~I~~g~~I~-~~~i~~svIg~~~~I~~~~~I~ 438 (527)
.+.+.+.|.+ |.|.+++||++|+|+ .+.+.+++||++|.|++++.|.
T Consensus 21 ~IG~~~~Ig~~a~I~~s~IG~~s~I~~~~~i~~~~IG~~~~I~~~v~I~ 69 (204)
T TIGR03308 21 KLGRYTEIGERTRLREVALGDYSYVMRDCDIIYTTIGKFCSIAAMVRIN 69 (204)
T ss_pred EeCCCcEECCCcEEeCCEECCCCEECCCcEEeeeEECCCCEECCCCEEC
Confidence 4444455533 555556666666666 3555566666666666666654
No 159
>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.79 E-value=4e-08 Score=91.50 Aligned_cols=99 Identities=16% Similarity=0.187 Sum_probs=63.1
Q ss_pred eeEECCCCEEcceeEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCcEEeeeEEcCCCEEC
Q 009720 406 DAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIG 485 (527)
Q Consensus 406 ~s~I~~g~~I~~~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~iI~~~~~Ig 485 (527)
++.|+++|+|.. .+..+.||++|.|+++|+|..+.....+. +......++++ +.|++++.+.+++|++++.||
T Consensus 27 ~~~I~~~~~I~g-~~~~v~IG~~~~I~~~~~I~~~~~~~~~~---~~~~~v~Ig~~---~~Ig~~~~i~~~~Ig~~v~Ig 99 (161)
T cd03359 27 KTIIQSDVIIRG-DLATVSIGRYCILSEGCVIRPPFKKFSKG---VAFFPLHIGDY---VFIGENCVVNAAQIGSYVHIG 99 (161)
T ss_pred ceEEcCCCEEeC-CCcceEECCCcEECCCCEEeCCccccCCC---ccccCeEECCc---cEECCCCEEEeeEEcCCcEEC
Confidence 466666666652 12347899999999999998764332210 00001223344 788889999999999999999
Q ss_pred CCcEEeCCCCcCCCccCCCceEEecC
Q 009720 486 KDVVIVNKDDVQEADRPELGFYIRSG 511 (527)
Q Consensus 486 ~~~~i~~~~~v~~~~~~~~~~~i~~g 511 (527)
+++.|.....+++...++.++.+..|
T Consensus 100 ~~~~Ig~~~~I~~~~~i~~g~~V~~~ 125 (161)
T cd03359 100 KNCVIGRRCIIKDCVKILDGTVVPPD 125 (161)
T ss_pred CCCEEcCCCEECCCcEECCCCEECCC
Confidence 99998776555554444444444333
No 160
>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc. This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=98.78 E-value=5.4e-08 Score=93.94 Aligned_cols=140 Identities=16% Similarity=0.238 Sum_probs=72.6
Q ss_pred CCCCCCCCCCccCCCeeeec-eee-eeeEECCCCEEcc-eeE-eecEEcCCcEECCCCEEeeeEEeCCcccCchhh----
Q 009720 382 DPKTPFYTSPRFLPPTKIDN-CRI-KDAIISHGCFLRE-CTV-EHSIVGERSRLDYGVELKDTVMLGADYYQTESE---- 453 (527)
Q Consensus 382 ~~~~~i~~~~~~~~p~~i~~-~~i-~~s~I~~g~~I~~-~~i-~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~---- 453 (527)
.+...+.+.+.+.++++|++ +.| .+++|++++.|++ +.| .++.|+.+++|+++|.|.+...++.+.++....
T Consensus 5 ~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~ 84 (205)
T cd03352 5 GENVSIGPNAVIGEGVVIGDGVVIGPGVVIGDGVVIGDDCVIHPNVTIYEGCIIGDRVIIHSGAVIGSDGFGFAPDGGGW 84 (205)
T ss_pred CCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCEECCCcEECCCCEEcCCCceeEecCCcE
Confidence 34555666666666666654 555 3366666677764 555 467777777777777777765555433221110
Q ss_pred ------HHhhhcCCccceEeCCCcEEe-----eeEEcCCCEECCCcEEeCCCCcCCCccCCCceEEecCeEEEccCCEeC
Q 009720 454 ------IASLLAEGKVPIGVGRNTKIR-----NCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIE 522 (527)
Q Consensus 454 ------~~~~~~~~~~~~~Ig~~~~I~-----~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g~~vi~~~~~I~ 522 (527)
-..++.++ +.|+.++.+. ++.|++++.|+.++.|.....+++...++.++.+..+ +.|++++.|+
T Consensus 85 ~~~~~~~~v~Ig~~---~~Ig~~~~i~~~~~~~~~Ig~~~~i~~~v~I~~~~~ig~~~~i~~~~~i~~~-~~Ig~~~~ig 160 (205)
T cd03352 85 VKIPQLGGVIIGDD---VEIGANTTIDRGALGDTVIGDGTKIDNLVQIAHNVRIGENCLIAAQVGIAGS-TTIGDNVIIG 160 (205)
T ss_pred EEcCCcceEEECCC---EEECCCCEEeccccCCeEECCCCEECCceEEeCCCEECCCCEECCCCEEccc-cEECCCeEEc
Confidence 01233333 5566665554 3455555555555555544444444444433333332 2334444444
Q ss_pred CCc
Q 009720 523 DGM 525 (527)
Q Consensus 523 ~g~ 525 (527)
.++
T Consensus 161 ~~~ 163 (205)
T cd03352 161 GQV 163 (205)
T ss_pred CCC
Confidence 433
No 161
>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=98.77 E-value=4e-08 Score=79.65 Aligned_cols=74 Identities=19% Similarity=0.390 Sum_probs=58.7
Q ss_pred CCCeeee-ceeeeeeEECCCCEEcc-eeEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCc
Q 009720 394 LPPTKID-NCRIKDAIISHGCFLRE-CTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNT 471 (527)
Q Consensus 394 ~~p~~i~-~~~i~~s~I~~g~~I~~-~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~ 471 (527)
.+.+.|. ++.|.+++|+++|.|++ +.|.+++|++++.|+++++|.+++++++ +.|++++
T Consensus 3 g~~~~I~~~~~i~~s~ig~~~~ig~~~~i~~s~i~~~~~i~~~~~i~~~~i~~~-------------------~~i~~~~ 63 (79)
T cd05787 3 GRGTSIGEGTTIKNSVIGRNCKIGKNVVIDNSYIWDDVTIEDGCTIHHSIVADG-------------------AVIGKGC 63 (79)
T ss_pred cCCCEECCCCEEeccEECCCCEECCCCEEeCcEEeCCCEECCCCEEeCcEEcCC-------------------CEECCCC
Confidence 4566664 36777899999999984 8889999999999999999998888877 8888877
Q ss_pred EEe-eeEEcCCCEECC
Q 009720 472 KIR-NCIIDKNVKIGK 486 (527)
Q Consensus 472 ~I~-~~iI~~~~~Ig~ 486 (527)
+|. +++|+++++||+
T Consensus 64 ~i~~~~~v~~~~~ig~ 79 (79)
T cd05787 64 TIPPGSLISFGVVIGD 79 (79)
T ss_pred EECCCCEEeCCcEeCc
Confidence 765 466666666553
No 162
>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.
Probab=98.77 E-value=4.2e-08 Score=90.44 Aligned_cols=97 Identities=20% Similarity=0.334 Sum_probs=67.6
Q ss_pred eeEECCCCEEcceeEeecEEcCCcEECCCCEEeee---EEeCCcccCchhhHHhhhcCCccceEeCCCcEEee-----eE
Q 009720 406 DAIISHGCFLRECTVEHSIVGERSRLDYGVELKDT---VMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRN-----CI 477 (527)
Q Consensus 406 ~s~I~~g~~I~~~~i~~svIg~~~~I~~~~~I~~~---~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~-----~i 477 (527)
+++|+++|.|. .+..||+++.|+++++|..+ ++++.+ +.|+++++|.. ++
T Consensus 5 ~~~i~~~a~i~----g~v~ig~~~~I~~~~~I~~~~~~~~IG~~------------------~~I~~~~~I~~~~~~~~~ 62 (153)
T cd04645 5 SAFIAPNATVI----GDVTLGEGSSVWFGAVLRGDVNPIRIGER------------------TNIQDGSVLHVDPGYPTI 62 (153)
T ss_pred CeEECCCCEEE----EeEEECCCcEEcCCeEEECCCCceEECCC------------------CEECCCcEEecCCCCCeE
Confidence 34555555554 24678888888888888754 344443 78888888876 58
Q ss_pred EcCCCEECCCcEEeCCCCcCCCccCCCceEEecCeEEEccCCEeCCCcc
Q 009720 478 IDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMV 526 (527)
Q Consensus 478 I~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g~~vi~~~~~I~~g~v 526 (527)
|++++.|+.++++.+ ..+++...++.++.+..+ ++|++++.|+++++
T Consensus 63 Ig~~~~I~~~~~i~~-~~Ig~~~~Ig~~~~v~~~-~~ig~~~~ig~~~~ 109 (153)
T cd04645 63 IGDNVTVGHGAVLHG-CTIGDNCLIGMGAIILDG-AVIGKGSIVAAGSL 109 (153)
T ss_pred EcCCcEECCCcEEee-eEECCCCEECCCCEEcCC-CEECCCCEECCCCE
Confidence 888888888888876 356677777777777655 44577777766654
No 163
>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89).
Probab=98.76 E-value=6e-08 Score=96.57 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=13.5
Q ss_pred cEEcCCcEECCCCEEeeeEEeC
Q 009720 423 SIVGERSRLDYGVELKDTVMLG 444 (527)
Q Consensus 423 svIg~~~~I~~~~~I~~~~i~~ 444 (527)
++||.+|+||++|.|..+..++
T Consensus 142 a~IG~~v~IG~nv~I~~g~~Ig 163 (269)
T TIGR00965 142 ATVGSCAQIGKNVHLSGGVGIG 163 (269)
T ss_pred cEECCCCEECCCCEEcCCcccC
Confidence 5666666666666665555443
No 164
>PLN02472 uncharacterized protein
Probab=98.76 E-value=3.8e-08 Score=97.69 Aligned_cols=98 Identities=17% Similarity=0.251 Sum_probs=74.6
Q ss_pred eeEECCCCEEcceeEeecEEcCCcEECCCCEEeee---EEeCCcccCchhhHHhhhcCCccceEeCCCcEEe--------
Q 009720 406 DAIISHGCFLRECTVEHSIVGERSRLDYGVELKDT---VMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR-------- 474 (527)
Q Consensus 406 ~s~I~~g~~I~~~~i~~svIg~~~~I~~~~~I~~~---~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~-------- 474 (527)
++.|.+++.|.+ ++.||+++.|.++++|... +.+|.. +.||++|+|+
T Consensus 65 ~~~I~p~a~i~G----~V~Ig~~a~I~~gavirgd~~~I~IG~~------------------t~Ig~~~vI~~~~~~~~~ 122 (246)
T PLN02472 65 DAYVAPNVVLAG----QVTVWDGASVWNGAVLRGDLNKITVGFC------------------SNVQERCVLHAAWNSPTG 122 (246)
T ss_pred CCEECCCCEEec----CEEECCCCEEcCCCEEecCCcceEECCC------------------CEECCCCEEeecCccccC
Confidence 455666666653 3678888888888877654 555554 7888888884
Q ss_pred ---eeEEcCCCEECCCcEEeCCCCcCCCccCCCceEEecCeEEEccCCEeCCCccC
Q 009720 475 ---NCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 527 (527)
Q Consensus 475 ---~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g~~vi~~~~~I~~g~vi 527 (527)
+++|++++.||.++.|.+ ..+++++.++.++.|..| ++|++++.|++|++|
T Consensus 123 i~~~tvIG~~v~IG~~s~L~~-~~Igd~v~IG~~svI~~g-avIg~~~~Ig~gsvV 176 (246)
T PLN02472 123 LPAETLIDRYVTIGAYSLLRS-CTIEPECIIGQHSILMEG-SLVETHSILEAGSVL 176 (246)
T ss_pred CCCCcEECCCCEECCCcEECC-eEEcCCCEECCCCEECCC-CEECCCCEECCCCEE
Confidence 689999999999999974 568888888888888877 566888888888754
No 165
>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.
Probab=98.75 E-value=5.8e-08 Score=91.01 Aligned_cols=27 Identities=22% Similarity=0.314 Sum_probs=16.0
Q ss_pred eEeCCCcEEeeeEEcCCCEECCCcEEe
Q 009720 465 IGVGRNTKIRNCIIDKNVKIGKDVVIV 491 (527)
Q Consensus 465 ~~Ig~~~~I~~~iI~~~~~Ig~~~~i~ 491 (527)
+.||.++.|.++.||+++.||.++.|.
T Consensus 89 ~~Ig~~~~I~~~~Ig~~~~Ig~~s~i~ 115 (167)
T cd00710 89 CFIGFRSVVFNAKVGDNCVIGHNAVVD 115 (167)
T ss_pred CEECCCCEEECCEECCCCEEcCCCEEe
Confidence 555555555566666666666666663
No 166
>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition. It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.
Probab=98.74 E-value=6.4e-08 Score=89.53 Aligned_cols=97 Identities=20% Similarity=0.273 Sum_probs=72.0
Q ss_pred eeEECCCCEEcceeEeecEEcCCcEECCCCEEeee---EEeCCcccCchhhHHhhhcCCccceEeCCCcEEee-----eE
Q 009720 406 DAIISHGCFLRECTVEHSIVGERSRLDYGVELKDT---VMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRN-----CI 477 (527)
Q Consensus 406 ~s~I~~g~~I~~~~i~~svIg~~~~I~~~~~I~~~---~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~-----~i 477 (527)
+++|.++++|. ..++||++|.|+++|.|... +.++++ +.|+++|.|.. ++
T Consensus 6 ~~~i~~~~~i~----~~v~iG~~~~I~~~a~I~~~~~~i~Ig~~------------------~~Ig~~~~I~~~~~~~~~ 63 (154)
T cd04650 6 KAYVHPTSYVI----GDVVIGELTSVWHYAVIRGDNDSIYIGKY------------------SNVQENVSIHTDHGYPTE 63 (154)
T ss_pred CeEECCCCEEE----eeEEECCCCEEcCCeEEEcCCCcEEECCC------------------CEECCCCEEEeCCCCCeE
Confidence 45566666665 34688888888888888875 445444 88888888875 78
Q ss_pred EcCCCEECCCcEEeCCCCcCCCccCCCceEEecCeEEEccCCEeCCCcc
Q 009720 478 IDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMV 526 (527)
Q Consensus 478 I~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g~~vi~~~~~I~~g~v 526 (527)
|++++.|+.++.|.+. .++++++++.++.+..+ ++|+++++|++++.
T Consensus 64 Ig~~~~I~~~~~i~~~-~Ig~~~~Ig~~~~i~~~-~~Ig~~~~vg~~~~ 110 (154)
T cd04650 64 IGDYVTIGHNAVVHGA-KVGNYVIVGMGAILLNG-AKIGDHVIIGAGAV 110 (154)
T ss_pred ECCCCEECCCcEEECc-EECCCCEEcCCCEEeCC-CEECCCCEECCCCE
Confidence 8999999998888654 67778888888777776 45677777777754
No 167
>PTZ00339 UDP-N-acetylglucosamine pyrophosphorylase; Provisional
Probab=98.74 E-value=8.3e-07 Score=95.86 Aligned_cols=215 Identities=19% Similarity=0.220 Sum_probs=127.1
Q ss_pred CceEEEEEeCCCCCccccCccCCCccceeeC---CcchhHHHHHHHHHHc------------C-CCEEEEEe-ccCchhH
Q 009720 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVA---GCYRLIDIPMSNCINS------------G-INKIFVLT-QFNSASL 155 (527)
Q Consensus 93 ~~m~aVILAaG~GtRL~PLT~~~PKpLlpIg---Gk~pLId~~l~~l~~~------------G-i~~I~Iv~-~~~~~~i 155 (527)
.++.+||||||.||||+ ...||+|+||+ |+ ||+++.++.+... + .-.++|++ .+..+.+
T Consensus 105 gkvavViLAGG~GTRLg---~~~PK~ll~I~~~~gk-sL~q~~~erI~~l~~~~~~~~~~~~~~~Ip~~IMTS~~t~~~t 180 (482)
T PTZ00339 105 GEVAVLILAGGLGTRLG---SDKPKGLLECTPVKKK-TLFQFHCEKVRRLEEMAVAVSGGGDDPTIYILVLTSSFNHDQT 180 (482)
T ss_pred CCeEEEEECCCCcCcCC---CCCCCeEeeecCCCCc-cHHHHHHHHHHHHhhhhhcccccccCCCCCEEEEeCcchHHHH
Confidence 56999999999999996 57999999995 88 9999999999874 1 12455655 4677888
Q ss_pred HHHHHH-hhccCCc----ccCCCeEEEeccccCC---CCCC--CCcccChHHHHHHHH--HHHHhhhcCCCCeEEEEcCc
Q 009720 156 NRHIAR-TYFGNGT----NFGDGFVEVLAATQTP---GESG--KNWFQGTADAVRQFT--WVFEDAKNRNIENVAILCGD 223 (527)
Q Consensus 156 ~~hl~~-~y~~~~~----~~~~~~V~vl~~~q~~---~~~~--~~~~~Gta~al~~a~--~~l~~~~~~~~e~~Lvl~gD 223 (527)
.+|+.+ .||+-.. -|.++.+..+...... .... .-.|.|.|+..+... ..++++...+.+.+.+.+.|
T Consensus 181 ~~~f~~~~~FGl~~~~V~~F~Q~~~P~i~~~~g~ill~~~~~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v~~vD 260 (482)
T PTZ00339 181 RQFLEENNFFGLDKEQVIFFKQSSLPCYDENTGRFIMSSQGSLCTAPGGNGDVFKALAKCSELMDIVRKGIKYVQVISID 260 (482)
T ss_pred HHHHHhccccCCCcccEEEEecCCcceEecCCCCcccCCCCceeeCCCCCcHHHHHHHHCCcHHHHHHcCCEEEEEEecC
Confidence 888853 2343211 0111112221110000 0000 012358877655443 23566666788999999999
Q ss_pred eee-cCCHHHHHHHHHHcCC-cEEEEEEEcCCCCCCCceEEE-ECCCCceEEEEecCCccccccccccccccCCCccccc
Q 009720 224 HLY-RMDYMDFIQSHVDRDA-DITISCAAVGESRASDYGLVK-IDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEAR 300 (527)
Q Consensus 224 ~l~-~~dl~~ll~~h~~~~a-d~tv~~~~~~~~~~~~~g~v~-~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~ 300 (527)
++. ..-=-.|+-.+.+.++ ++.--+.+... ...-|++. .|..-.|+++.|=+..... ...-++..+
T Consensus 261 N~L~k~~DP~flG~~~~~~~~~~~~kvvk~~~--~EkvG~~~~~~g~~~vvEYsEi~~~~~~-~~~~~~g~l-------- 329 (482)
T PTZ00339 261 NILAKVLDPEFIGLASSFPAHDVLNKCVKRED--DESVGVFCLKDYEWQVVEYTEINERILN-NDELLTGEL-------- 329 (482)
T ss_pred cccccccCHHHhHHHHHCCchhheeeeecCCC--CCceeEEEEeCCcccEEEEeccChhhhh-cccccCCee--------
Confidence 974 3333456777777777 66544443332 13346554 4433367777775433211 000001111
Q ss_pred cCCceeeeeEEEEeHHHHHHHHH
Q 009720 301 KCPYVASMGVYVFKKDVLFKLLR 323 (527)
Q Consensus 301 ~~~~l~~~GIYif~~~iL~~ll~ 323 (527)
.-...++..++|+.++|.++.+
T Consensus 330 -~f~~gnI~~h~fsl~fl~~~~~ 351 (482)
T PTZ00339 330 -AFNYGNICSHIFSLDFLKKVAA 351 (482)
T ss_pred -cccccceEEEEEEHHHHHHHhh
Confidence 1245788999999999987654
No 168
>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase. It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.74 E-value=6.6e-08 Score=79.10 Aligned_cols=73 Identities=19% Similarity=0.320 Sum_probs=59.7
Q ss_pred CCeeee-ceee-eeeEECCCCEEc-ceeEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCc
Q 009720 395 PPTKID-NCRI-KDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNT 471 (527)
Q Consensus 395 ~p~~i~-~~~i-~~s~I~~g~~I~-~~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~ 471 (527)
|++.|+ ++.| .+++|+++|.|+ ++.|.+|+|+++++|++++.|.+++++.+ +.|++++
T Consensus 4 ~~~~I~~~~~i~~~~~Ig~~~~Ig~~~~i~~sii~~~~~i~~~~~i~~sii~~~-------------------~~v~~~~ 64 (80)
T cd05824 4 PSAKIGKTAKIGPNVVIGPNVTIGDGVRLQRCVILSNSTVRDHSWVKSSIVGWN-------------------STVGRWT 64 (80)
T ss_pred CCCEECCCCEECCCCEECCCCEECCCcEEeeeEEcCCCEECCCCEEeCCEEeCC-------------------CEECCCc
Confidence 445553 3445 478999999997 58889999999999999999999988887 8999999
Q ss_pred EEee-eEEcCCCEECC
Q 009720 472 KIRN-CIIDKNVKIGK 486 (527)
Q Consensus 472 ~I~~-~iI~~~~~Ig~ 486 (527)
.+.+ ++|+++++|+.
T Consensus 65 ~~~~~~~ig~~~~i~~ 80 (80)
T cd05824 65 RLENVTVLGDDVTIKD 80 (80)
T ss_pred EEecCEEECCceEECC
Confidence 9987 77777777763
No 169
>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.
Probab=98.72 E-value=8.2e-08 Score=87.14 Aligned_cols=40 Identities=18% Similarity=0.209 Sum_probs=19.3
Q ss_pred eEeCCCcEEe-eeEEcCCCEECCCcEEeCCCCcCCCccCCC
Q 009720 465 IGVGRNTKIR-NCIIDKNVKIGKDVVIVNKDDVQEADRPEL 504 (527)
Q Consensus 465 ~~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~ 504 (527)
+.||+++.|. ++.|..++.||+++.|.....+.+..++++
T Consensus 76 v~Ig~~~~Ig~~a~I~~gv~Ig~~~~Ig~g~~V~~~~~I~~ 116 (139)
T cd03350 76 VIIEDDVFIGANCEVVEGVIVGKGAVLAAGVVLTQSTPIYD 116 (139)
T ss_pred eEECCCCEECCCCEECCCCEECCCCEEcCCCEEcCCeEecc
Confidence 5555555553 455555555555555544444444433333
No 170
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.71 E-value=5.5e-08 Score=104.93 Aligned_cols=115 Identities=17% Similarity=0.174 Sum_probs=73.0
Q ss_pred cCCCeeeec-eee-eeeEECCCCEEcc-eeEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCC
Q 009720 393 FLPPTKIDN-CRI-KDAIISHGCFLRE-CTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGR 469 (527)
Q Consensus 393 ~~~p~~i~~-~~i-~~s~I~~g~~I~~-~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~ 469 (527)
+.+.+.|.+ +.| .++.|+++|.|++ +.|.+++||++|+|+++|.|.....++++ +.||+
T Consensus 271 I~~~~~i~~~~~I~~~~~ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig~~------------------~~Ig~ 332 (446)
T PRK14353 271 IGRDVVIEPNVVFGPGVTVASGAVIHAFSHLEGAHVGEGAEVGPYARLRPGAELGEG------------------AKVGN 332 (446)
T ss_pred ECCCCEECCCCEECCCCEECCCCEECCCeEEeccEECCCcEECCCeEEeccceecCC------------------eEEcC
Confidence 334444432 444 3466777777773 67778999999999999999743334443 89999
Q ss_pred CcEEeeeEEcCCCEECCCcEEeCCCCcCCCccCCCceEEec------CeEEEccCCEeCCCcc
Q 009720 470 NTKIRNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRS------GITIIMEKATIEDGMV 526 (527)
Q Consensus 470 ~~~I~~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~------g~~vi~~~~~I~~g~v 526 (527)
++.|.+++|++++.|+.++.+.+. .++++++++.++.+.. .-++||+++.|++|++
T Consensus 333 ~~~i~~~~i~~~~~i~~~~~i~~~-~ig~~~~Ig~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~ 394 (446)
T PRK14353 333 FVEVKNAKLGEGAKVNHLTYIGDA-TIGAGANIGAGTITCNYDGFNKHRTEIGAGAFIGSNSA 394 (446)
T ss_pred ceEEeceEECCCCEECCeeEEcCc-EEcCCcEECCceeeeccccccCCCcEECCCcEECCCCE
Confidence 999999999998877776666442 4555555555544311 0134455555555543
No 171
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.71 E-value=7e-08 Score=103.52 Aligned_cols=106 Identities=22% Similarity=0.274 Sum_probs=62.9
Q ss_pred cCCCeeeeceeeeeeEECCCCEEc-ceeEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCc
Q 009720 393 FLPPTKIDNCRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNT 471 (527)
Q Consensus 393 ~~~p~~i~~~~i~~s~I~~g~~I~-~~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~ 471 (527)
+.+.+.|.++.|.+|+||++|.|+ ++.|.+|.||++|.|+. +.|.++.+....++. .+.++++ +.||.++
T Consensus 285 i~~~~~I~~~~i~~~~ig~~~~i~~~~~i~~~~ig~~~~i~~-~~~~~~~i~~~~~i~-----d~~Ig~~---~~ig~~~ 355 (430)
T PRK14359 285 IKAHSVIEESIIENSDVGPLAHIRPKSEIKNTHIGNFVETKN-AKLNGVKAGHLSYLG-----DCEIDEG---TNIGAGT 355 (430)
T ss_pred ECCCCEEeccEEeCCEECCCCEECCCcEEeccEEcCcEEEcc-cEecccccccccccc-----CCEECCC---CEECCCc
Confidence 345555555566788999999999 47778888888887765 334333322222111 1334444 5555555
Q ss_pred EEe--------eeEEcCCCEECCCcEEeCCCCcCCCccCCCceEEecCeE
Q 009720 472 KIR--------NCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGIT 513 (527)
Q Consensus 472 ~I~--------~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g~~ 513 (527)
.+. .++||+++.||.++.|.... ++++++.|..|.+
T Consensus 356 ~~~~~~~~~~~~~~ig~~~~ig~~~~i~~~~------~ig~~~~i~~g~~ 399 (430)
T PRK14359 356 ITCNYDGKKKHKTIIGKNVFIGSDTQLVAPV------NIEDNVLIAAGST 399 (430)
T ss_pred eEccccCccCcCCEECCCeEEcCCCEEeCCc------EECCCCEECCCCE
Confidence 443 25777777777777776554 4555555555533
No 172
>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional
Probab=98.70 E-value=1.3e-07 Score=94.94 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=11.7
Q ss_pred cEEcCCcEECCCCEEeeeEEeC
Q 009720 423 SIVGERSRLDYGVELKDTVMLG 444 (527)
Q Consensus 423 svIg~~~~I~~~~~I~~~~i~~ 444 (527)
+.||.+|.||++|.|...+.++
T Consensus 145 a~IG~~a~IG~nv~I~~gv~I~ 166 (272)
T PRK11830 145 ATVGSCAQIGKNVHLSGGVGIG 166 (272)
T ss_pred cEECCCCEECCCcEECCCccCC
Confidence 4555555555555555544444
No 173
>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.67 E-value=8.6e-08 Score=82.32 Aligned_cols=67 Identities=10% Similarity=0.218 Sum_probs=51.8
Q ss_pred eeEECCCCEEcc-eeE-eecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCcEEeeeEEcCCCE
Q 009720 406 DAIISHGCFLRE-CTV-EHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVK 483 (527)
Q Consensus 406 ~s~I~~g~~I~~-~~i-~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~iI~~~~~ 483 (527)
.++|+++|.|++ +.| .+++||++|+|+. +|+++++++. +.|+++++|.+++||++++
T Consensus 29 ~v~IG~~~~Ig~~~~I~~~v~IG~~~~Ig~--~i~~svi~~~-------------------~~i~~~~~lg~siIg~~v~ 87 (101)
T cd05635 29 PVYIGPGSRVKMGARIYGNTTIGPTCKIGG--EVEDSIIEGY-------------------SNKQHDGFLGHSYLGSWCN 87 (101)
T ss_pred CCEECCCCEECCCCEEeCcCEECCCCEECC--EECccEEcCC-------------------CEecCcCEEeeeEECCCCE
Confidence 456666666653 444 3478888888863 6788888877 7899999999999999999
Q ss_pred ECCCcEEeCC
Q 009720 484 IGKDVVIVNK 493 (527)
Q Consensus 484 Ig~~~~i~~~ 493 (527)
||+++.+.|-
T Consensus 88 ig~~~~~~~~ 97 (101)
T cd05635 88 LGAGTNNSDL 97 (101)
T ss_pred ECCCceeccc
Confidence 9999998773
No 174
>COG1043 LpxA Acyl-[acyl carrier protein]
Probab=98.63 E-value=1.6e-07 Score=90.59 Aligned_cols=29 Identities=14% Similarity=0.151 Sum_probs=14.0
Q ss_pred EECCCcEEeCCCCcCCCccCCCceEEecC
Q 009720 483 KIGKDVVIVNKDDVQEADRPELGFYIRSG 511 (527)
Q Consensus 483 ~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g 511 (527)
+||.|+-|.-+.+|.-.|++++.+.+.++
T Consensus 108 ~IGdnnl~May~HVAHDC~iGn~~ilaNn 136 (260)
T COG1043 108 RIGDNNLIMAYAHVAHDCVIGNNCILANN 136 (260)
T ss_pred EECCCCEEEEeeeeeccceecCcEEEecC
Confidence 34444444444444445555555555444
No 175
>COG1083 NeuA CMP-N-acetylneuraminic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=98.61 E-value=1.6e-06 Score=82.59 Aligned_cols=219 Identities=18% Similarity=0.205 Sum_probs=136.9
Q ss_pred CceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcC-CCEEEEEeccCchhHHHHHHHhhccCCcccC
Q 009720 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSG-INKIFVLTQFNSASLNRHIARTYFGNGTNFG 171 (527)
Q Consensus 93 ~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~G-i~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~ 171 (527)
++..|||+|.|-..|. .-|-+.+++|+ |||.|+++++.+++ +++|+|-+ .++.+.+.- +.| |
T Consensus 2 ~~~iAiIpAR~gSKgI------~~KNi~~~~gk-pLi~~~I~aA~ns~~fd~VviSs--Ds~~Il~~A-~~y-------g 64 (228)
T COG1083 2 MKNIAIIPARGGSKGI------KNKNIRKFGGK-PLIGYTIEAALNSKLFDKVVISS--DSEEILEEA-KKY-------G 64 (228)
T ss_pred cceEEEEeccCCCCcC------CccchHHhCCc-chHHHHHHHHhcCCccceEEEcC--CcHHHHHHH-HHh-------C
Confidence 4567999999999998 45999999999 99999999999997 68887766 455555443 344 2
Q ss_pred CCeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCc--eeecCCHHHHHHHHHHcCCcEEEEEE
Q 009720 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGD--HLYRMDYMDFIQSHVDRDADITISCA 249 (527)
Q Consensus 172 ~~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD--~l~~~dl~~ll~~h~~~~ad~tv~~~ 249 (527)
.. +.+.-+..... + ...|-+++..+.+.+. ...+.++++.+- .+...++++..+.+.+.+.+..+.+.
T Consensus 65 ak-~~~~Rp~~LA~----D-~ast~~~~lh~le~~~----~~~~~~~lLq~TsPLl~~~~ik~A~e~f~~~~~~sl~sa~ 134 (228)
T COG1083 65 AK-VFLKRPKELAS----D-RASTIDAALHALESFN----IDEDTLILLQPTSPLLTSLHIKEAFEKFLNNQYDSLFSAV 134 (228)
T ss_pred cc-ccccCChhhcc----C-chhHHHHHHHHHHHhc----cccCeeEEeccCccccchhHHHHHHHHHhcCCCcceEEEe
Confidence 11 11221111110 0 0123345555555554 233446666553 45567899999999988888888888
Q ss_pred EcCCCCCCCceEEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCCCC
Q 009720 250 AVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTS 329 (527)
Q Consensus 250 ~~~~~~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~~~ 329 (527)
+.... + |-.... ++|.+..+.|.|.... |.......|-.+..+|+++.+.|.+ +.
T Consensus 135 e~e~~-p--~k~f~~-~~~~~~~~~~~~~~~~--------------rrQ~Lpk~Y~~NgaiYi~~~~~l~e---~~---- 189 (228)
T COG1083 135 ECEHH-P--YKAFSL-NNGEVKPVNEDPDFET--------------RRQDLPKAYRENGAIYINKKDALLE---ND---- 189 (228)
T ss_pred ecccc-h--HHHHHh-cCCceeecccCCcccc--------------ccccchhhhhhcCcEEEehHHHHhh---cC----
Confidence 77642 1 211222 3477887777663221 1111113467788999999998752 11
Q ss_pred CchhhhhHHhhhhcCceEEEEecce-EEecCCHHHHHHHHHHhhc
Q 009720 330 NDFGSEIIPAAIMEHDVQAYIFRDY-WEDIGTIKSFYEANMALTK 373 (527)
Q Consensus 330 ~d~~~dii~~li~~~~V~~~~~~g~-w~dIgt~~d~~~An~~ll~ 373 (527)
.-|. .+...|..+.+ ..||++..||..|+..+..
T Consensus 190 ~~f~----------~~~~~y~m~~~~~~DID~~~Dl~iae~l~~~ 224 (228)
T COG1083 190 CFFI----------PNTILYEMPEDESIDIDTELDLEIAENLIFL 224 (228)
T ss_pred ceec----------CCceEEEcCcccccccccHHhHHHHHHHhhh
Confidence 1111 23445555543 5699999999999876653
No 176
>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase. Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.
Probab=98.60 E-value=1.3e-07 Score=93.35 Aligned_cols=73 Identities=22% Similarity=0.381 Sum_probs=46.8
Q ss_pred eeEECCCCEEcc-eeEe-ecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCcEEe-eeEEcCCC
Q 009720 406 DAIISHGCFLRE-CTVE-HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR-NCIIDKNV 482 (527)
Q Consensus 406 ~s~I~~g~~I~~-~~i~-~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~-~~iI~~~~ 482 (527)
+++||++|.|++ +.|. +++||++|+|+.+|+|.+.. +.+ ...++.||+++.|. +|+|.+++
T Consensus 116 ~~~IG~~~~I~~~a~I~~~s~Ig~~~~Ig~~~~I~~~~--~~~--------------~~~~v~IGd~v~IG~gsvI~~g~ 179 (231)
T TIGR03532 116 GAEIGEGTMIDMNAVLGGRATVGKNVHIGAGAVLAGVI--EPP--------------SAKPVVIEDNVLIGANAVILEGV 179 (231)
T ss_pred CeEECCCCEEccccccCCCcEECCCcEEcCCcEEcccc--ccc--------------cCCCeEECCCcEECCCCEEcCCC
Confidence 577788888873 5553 67777777777777776522 110 01237888877775 66777777
Q ss_pred EECCCcEEeCCC
Q 009720 483 KIGKDVVIVNKD 494 (527)
Q Consensus 483 ~Ig~~~~i~~~~ 494 (527)
+||+++.|+...
T Consensus 180 ~Ig~~~~Igags 191 (231)
T TIGR03532 180 RVGKGAVVAAGA 191 (231)
T ss_pred EECCCCEECCCC
Confidence 777777776554
No 177
>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH. THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.
Probab=98.57 E-value=4.8e-07 Score=82.08 Aligned_cols=28 Identities=14% Similarity=0.210 Sum_probs=12.3
Q ss_pred eEeCCCcEEeeeEEcCCCEECCCcEEeCC
Q 009720 465 IGVGRNTKIRNCIIDKNVKIGKDVVIVNK 493 (527)
Q Consensus 465 ~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~ 493 (527)
+.||.++.| +..||+|+.||+++++...
T Consensus 80 ~~IG~ga~I-gv~IG~~~vIGaGsvV~k~ 107 (147)
T cd04649 80 CLLGANSGI-GISLGDNCIVEAGLYVTAG 107 (147)
T ss_pred CEECCCCEE-eEEECCCCEECCCCEEeCC
Confidence 334444444 3444444444444444443
No 178
>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain. The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.
Probab=98.57 E-value=6.9e-07 Score=84.15 Aligned_cols=28 Identities=21% Similarity=0.331 Sum_probs=14.3
Q ss_pred eEeCCCcEE-eeeEEcCCCEECCCcEEeC
Q 009720 465 IGVGRNTKI-RNCIIDKNVKIGKDVVIVN 492 (527)
Q Consensus 465 ~~Ig~~~~I-~~~iI~~~~~Ig~~~~i~~ 492 (527)
+.||+++.| .+|+|+.++.||++|.|..
T Consensus 133 ~~ig~~~~i~~~~~i~~~~~ig~~~~ig~ 161 (197)
T cd03360 133 CVIGDFVHIAPGVVLSGGVTIGEGAFIGA 161 (197)
T ss_pred CEECCCCEECCCCEEcCCcEECCCCEECC
Confidence 455555555 2455555555555555543
No 179
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.56 E-value=1.8e-07 Score=98.90 Aligned_cols=81 Identities=16% Similarity=0.246 Sum_probs=67.8
Q ss_pred CccCCCeeeeceeeeeeEECCCCEEcc-eeEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCC
Q 009720 391 PRFLPPTKIDNCRIKDAIISHGCFLRE-CTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGR 469 (527)
Q Consensus 391 ~~~~~p~~i~~~~i~~s~I~~g~~I~~-~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~ 469 (527)
+.+.+++.|. +.+.+|+||++|.|++ |.|++|+|+++|+|+++|+|.+++++.+ +.||.
T Consensus 294 ~~Ig~~~~I~-~~v~~s~ig~~~~I~~~~~i~~svi~~~~~i~~~~~i~~~ii~~~-------------------~~i~~ 353 (380)
T PRK05293 294 SLVVEGCVVY-GTVEHSVLFQGVQVGEGSVVKDSVIMPGAKIGENVVIERAIIGEN-------------------AVIGD 353 (380)
T ss_pred CEECCCCEEc-ceecceEEcCCCEECCCCEEECCEEeCCCEECCCeEEeEEEECCC-------------------CEECC
Confidence 3455555553 2456899999999994 8999999999999999999999988877 89999
Q ss_pred CcEEee-----eEEcCCCEECCCcEEe
Q 009720 470 NTKIRN-----CIIDKNVKIGKDVVIV 491 (527)
Q Consensus 470 ~~~I~~-----~iI~~~~~Ig~~~~i~ 491 (527)
+++|.+ .+||++++|+.+++|+
T Consensus 354 ~~~i~~~~~~~~~ig~~~~~~~~~~~~ 380 (380)
T PRK05293 354 GVIIGGGKEVITVIGENEVIGVGTVIG 380 (380)
T ss_pred CCEEcCCCceeEEEeCCCCCCCCcEeC
Confidence 999987 8888888888887763
No 180
>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.
Probab=98.55 E-value=4.8e-07 Score=91.19 Aligned_cols=15 Identities=13% Similarity=0.264 Sum_probs=6.3
Q ss_pred eEEcCCCEECCCcEE
Q 009720 476 CIIDKNVKIGKDVVI 490 (527)
Q Consensus 476 ~iI~~~~~Ig~~~~i 490 (527)
+.||+++.||.|+.|
T Consensus 251 V~IGe~~lIGagA~I 265 (341)
T TIGR03536 251 ISVGEGCLLGANAGI 265 (341)
T ss_pred EEECCCcEECCCCEE
Confidence 334444444444444
No 181
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=98.54 E-value=2.4e-07 Score=96.06 Aligned_cols=62 Identities=21% Similarity=0.415 Sum_probs=53.7
Q ss_pred CCCCEEcc-eeEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCcEEeeeEEcCCCEECCCc
Q 009720 410 SHGCFLRE-CTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDV 488 (527)
Q Consensus 410 ~~g~~I~~-~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~iI~~~~~Ig~~~ 488 (527)
.+-+.+.+ +.+.+|.|+.+|.|. | .|++|++..+ +.|+++|.|++|+|-.++.||+||
T Consensus 283 ~pPak~~~~s~v~nSLv~~GciI~-G-~V~nSVL~~~-------------------v~I~~gs~i~~svim~~~~IG~~~ 341 (393)
T COG0448 283 LPPAKFVNDSEVSNSLVAGGCIIS-G-TVENSVLFRG-------------------VRIGKGSVIENSVIMPDVEIGEGA 341 (393)
T ss_pred CCCceEecCceEeeeeeeCCeEEE-e-EEEeeEEecC-------------------eEECCCCEEEeeEEeCCcEECCCC
Confidence 34444442 456889999999998 5 8999999988 999999999999999999999999
Q ss_pred EEeC
Q 009720 489 VIVN 492 (527)
Q Consensus 489 ~i~~ 492 (527)
+|.+
T Consensus 342 ~l~~ 345 (393)
T COG0448 342 VLRR 345 (393)
T ss_pred EEEE
Confidence 9987
No 182
>PLN02694 serine O-acetyltransferase
Probab=98.54 E-value=2.2e-07 Score=93.49 Aligned_cols=80 Identities=23% Similarity=0.394 Sum_probs=44.3
Q ss_pred eeEECCCCEEcceeEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCcEE-eeeEEcCCCEE
Q 009720 406 DAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKI-RNCIIDKNVKI 484 (527)
Q Consensus 406 ~s~I~~g~~I~~~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I-~~~iI~~~~~I 484 (527)
++.||+|++|... ..++||++|.||++|.|..++.+++.- +........++++ +.||.|++| .++.||++++|
T Consensus 166 ~A~IG~gv~Idh~--tGVVIGe~a~IGdnv~I~~~VtLGg~g-~~~~~r~piIGd~---V~IGagA~Ilggi~IGd~a~I 239 (294)
T PLN02694 166 AAKIGKGILFDHA--TGVVIGETAVIGNNVSILHHVTLGGTG-KACGDRHPKIGDG---VLIGAGATILGNVKIGEGAKI 239 (294)
T ss_pred cceecCCEEEeCC--CCeEECCCcEECCCCEEeecceeCCcc-cccCCCccEECCC---eEECCeeEECCCCEECCCCEE
Confidence 4555666666521 137888888888888887777776520 0000113334444 555555555 35555555555
Q ss_pred CCCcEEe
Q 009720 485 GKDVVIV 491 (527)
Q Consensus 485 g~~~~i~ 491 (527)
|+++++.
T Consensus 240 GAgSVV~ 246 (294)
T PLN02694 240 GAGSVVL 246 (294)
T ss_pred CCCCEEC
Confidence 5555554
No 183
>PRK11132 cysE serine acetyltransferase; Provisional
Probab=98.53 E-value=6.1e-07 Score=90.11 Aligned_cols=38 Identities=26% Similarity=0.470 Sum_probs=23.2
Q ss_pred eeEECCCCEEcceeEeecEEcCCcEECCCCEEeeeEEeCC
Q 009720 406 DAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGA 445 (527)
Q Consensus 406 ~s~I~~g~~I~~~~i~~svIg~~~~I~~~~~I~~~~i~~~ 445 (527)
.+.||+|++|... ...+||.+|+||++|.|...+.+|+
T Consensus 147 ~a~IG~g~~I~h~--~givIG~~a~IGdnv~I~~~VtiGg 184 (273)
T PRK11132 147 AAKIGRGIMLDHA--TGIVIGETAVIENDVSILQSVTLGG 184 (273)
T ss_pred cceECCCeEEcCC--CCeEECCCCEECCCCEEcCCcEEec
Confidence 4566666666621 1247777777777777766555554
No 184
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.53 E-value=3e-07 Score=98.91 Aligned_cols=99 Identities=15% Similarity=0.137 Sum_probs=76.2
Q ss_pred EECCCCEEcceeEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCcEEeeeEEcC-------
Q 009720 408 IISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDK------- 480 (527)
Q Consensus 408 ~I~~g~~I~~~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~iI~~------- 480 (527)
.+.+.+.+..+.|++|.||++|.| ++|.|++++++++ |.||+++.|.+|+|..
T Consensus 294 ~~~~~a~~~~~~~~~~~ig~~~~i-~~~~i~~svi~~~-------------------~~Ig~~~~i~~svi~~~~~~p~~ 353 (429)
T PRK02862 294 RYLPPSKLLDATITESIIAEGCII-KNCSIHHSVLGIR-------------------SRIESGCTIEDTLVMGADFYESS 353 (429)
T ss_pred CCCCCccccccEEEeCEECCCCEE-CCcEEEEEEEeCC-------------------cEECCCCEEEeeEEecCcccccc
Confidence 344455555567778999999999 8999999988877 9999999999999965
Q ss_pred ------------CCEECCCcEEeCCCCcCCCccCCCceEEecCe-----------EEEccC-CEeCCCccC
Q 009720 481 ------------NVKIGKDVVIVNKDDVQEADRPELGFYIRSGI-----------TIIMEK-ATIEDGMVI 527 (527)
Q Consensus 481 ------------~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g~-----------~vi~~~-~~I~~g~vi 527 (527)
++.||++|.|.++ -+++++++++++.+.++. .+|+.+ ++|+.++++
T Consensus 354 ~~~~~~~~~~~~~~~Ig~~~~i~~~-ii~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (429)
T PRK02862 354 EEREELRKEGKPPLGIGEGTTIKRA-IIDKNARIGNNVRIVNKDNVEEADREDQGFYIRDGIVVVVKNAVI 423 (429)
T ss_pred cccccccccCCcccEECCCCEEEEE-EECCCcEECCCcEEecCCCcccccccccceEeeCCEEEEcCCcCC
Confidence 7999999999764 577788888888885443 345555 666666553
No 185
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=98.52 E-value=3.3e-07 Score=96.18 Aligned_cols=53 Identities=23% Similarity=0.360 Sum_probs=28.5
Q ss_pred eEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCcEEeeeEEcCCCEECCCcEEe
Q 009720 419 TVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIV 491 (527)
Q Consensus 419 ~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~iI~~~~~Ig~~~~i~ 491 (527)
.|.+|+||++|+|+.+ +|.+++++.+ +.||++|+|.+|+|++++.||.++.|.
T Consensus 291 ~i~~~~ig~~~~I~~~-~v~~s~i~~~-------------------~~I~~~~~i~~sii~~~~~v~~~~~l~ 343 (361)
T TIGR02091 291 QVVDSLVSEGCIISGA-TVSHSVLGIR-------------------VRIGSGSTVEDSVIMGDVGIGRGAVIR 343 (361)
T ss_pred EEECCEECCCCEECCC-EEEccEECCC-------------------CEECCCCEEeeeEEeCCCEECCCCEEe
Confidence 3344555555555544 4555554444 555555555555555555555555553
No 186
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=98.50 E-value=3.8e-07 Score=96.06 Aligned_cols=40 Identities=18% Similarity=0.483 Sum_probs=18.8
Q ss_pred eeeeEECCCCEEc-ceeEeecEEcCCcEECCCCEEeeeEEe
Q 009720 404 IKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVML 443 (527)
Q Consensus 404 i~~s~I~~g~~I~-~~~i~~svIg~~~~I~~~~~I~~~~i~ 443 (527)
|.+|+|+++|.|+ +|.|.+|+|+++|.|+++++|+++++.
T Consensus 302 v~~s~i~~~~~I~~~~~i~~sii~~~~~I~~~~~i~~~ii~ 342 (369)
T TIGR02092 302 VENSILSRGVHVGKDALIKNCIIMQRTVIGEGAHLENVIID 342 (369)
T ss_pred EeCCEECCCCEECCCCEEEeeEEeCCCEECCCCEEEEEEEC
Confidence 3444444444444 244444444444444444444444443
No 187
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.50 E-value=2.6e-07 Score=99.27 Aligned_cols=68 Identities=12% Similarity=0.231 Sum_probs=55.2
Q ss_pred eeEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCcEEeeeEEcCCCEECCCcEEeCCCCcC
Q 009720 418 CTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQ 497 (527)
Q Consensus 418 ~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~~~v~ 497 (527)
+.+.+|+||++|+| ++|.|++|+++.+ |.||++|+|++|+|+++++||+++.|.++ -+.
T Consensus 323 ~~~~~s~i~~~~~i-~~~~i~~svi~~~-------------------~~I~~~~~i~~svi~~~~~I~~~~~i~~~-ii~ 381 (425)
T PRK00725 323 GMAINSLVSGGCII-SGAVVRRSVLFSR-------------------VRVNSFSNVEDSVLLPDVNVGRSCRLRRC-VID 381 (425)
T ss_pred ceEEeCEEcCCcEE-cCccccCCEECCC-------------------CEECCCCEEeeeEEcCCCEECCCCEEeeE-EEC
Confidence 45678999999999 7999999988887 99999999999999999999999999753 233
Q ss_pred CCccCCCce
Q 009720 498 EADRPELGF 506 (527)
Q Consensus 498 ~~~~~~~~~ 506 (527)
+++++++++
T Consensus 382 ~~~~i~~~~ 390 (425)
T PRK00725 382 RGCVIPEGM 390 (425)
T ss_pred CCCEECCCC
Confidence 444444333
No 188
>PRK13627 carnitine operon protein CaiE; Provisional
Probab=98.49 E-value=3.9e-07 Score=87.67 Aligned_cols=60 Identities=13% Similarity=0.199 Sum_probs=32.2
Q ss_pred eEeCCCcEEe-----eeEEcCCCEECCCcEEeCCCCcCCCccCCCceEEecCeEEEccCCEeCCCcc
Q 009720 465 IGVGRNTKIR-----NCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMV 526 (527)
Q Consensus 465 ~~Ig~~~~I~-----~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g~~vi~~~~~I~~g~v 526 (527)
+.||++|.|+ +|+|++++.||.++++.+. .+++++.++.++.|..| ++||+++.|++|++
T Consensus 56 ~~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~i~g~-vIG~~v~IG~ga~V~~g-~~IG~~s~Vgags~ 120 (196)
T PRK13627 56 ANLQDGCIMHGYCDTDTIVGENGHIGHGAILHGC-VIGRDALVGMNSVIMDG-AVIGEESIVAAMSF 120 (196)
T ss_pred CEECCCCEEeCCCCCCCEECCCCEECCCcEEeeE-EECCCCEECcCCccCCC-cEECCCCEEcCCCE
Confidence 5555555553 3555666666655555443 25555555555555555 33455555555554
No 189
>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.49 E-value=1e-06 Score=75.69 Aligned_cols=64 Identities=16% Similarity=0.301 Sum_probs=41.8
Q ss_pred cEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCcEEeeeEEcCCCEECCCcEEeCCCCcCCCccC
Q 009720 423 SIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEADRP 502 (527)
Q Consensus 423 svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~~~v~~~~~~ 502 (527)
+.||+++.|+++|.|++.+.++.+ +.||. .|.+|+|.+++.|+.++.|.+
T Consensus 30 v~IG~~~~Ig~~~~I~~~v~IG~~------------------~~Ig~--~i~~svi~~~~~i~~~~~lg~---------- 79 (101)
T cd05635 30 VYIGPGSRVKMGARIYGNTTIGPT------------------CKIGG--EVEDSIIEGYSNKQHDGFLGH---------- 79 (101)
T ss_pred CEECCCCEECCCCEEeCcCEECCC------------------CEECC--EECccEEcCCCEecCcCEEee----------
Confidence 677777777777777654444443 55543 455677777666666666643
Q ss_pred CCceEEecCeEEEccCCEeCCCcc
Q 009720 503 ELGFYIRSGITIIMEKATIEDGMV 526 (527)
Q Consensus 503 ~~~~~i~~g~~vi~~~~~I~~g~v 526 (527)
++|+.++.|+++++
T Consensus 80 ----------siIg~~v~ig~~~~ 93 (101)
T cd05635 80 ----------SYLGSWCNLGAGTN 93 (101)
T ss_pred ----------eEECCCCEECCCce
Confidence 67788888888765
No 190
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=98.49 E-value=5e-07 Score=86.07 Aligned_cols=29 Identities=17% Similarity=0.391 Sum_probs=16.1
Q ss_pred eEeCCCcEEe-eeEEcCCCEECCCcEEeCC
Q 009720 465 IGVGRNTKIR-NCIIDKNVKIGKDVVIVNK 493 (527)
Q Consensus 465 ~~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~~ 493 (527)
+.|+.++.|. +|.|++++.||.++++...
T Consensus 142 ~~i~~~~~i~~~~~ig~~~~ig~~~~v~~~ 171 (201)
T TIGR03570 142 VHIAPGVTLSGGVVIGEGVFIGAGATIIQG 171 (201)
T ss_pred CEECCCCEEeCCcEECCCCEECCCCEEeCC
Confidence 4555555554 4556666666665555543
No 191
>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. Alternate name: tetrahydrodipicolinate N-succinyltransferase.
Probab=98.46 E-value=9.1e-07 Score=88.78 Aligned_cols=20 Identities=20% Similarity=0.473 Sum_probs=9.6
Q ss_pred eEEecCC--HHHHHHHHHHhhc
Q 009720 354 YWEDIGT--IKSFYEANMALTK 373 (527)
Q Consensus 354 ~w~dIgt--~~d~~~An~~ll~ 373 (527)
.|..-|- ++.|......+..
T Consensus 109 ~Wt~~Gp~~l~~f~~~~~~~~~ 130 (319)
T TIGR03535 109 VWTNHGPCAVDDFELTRARLRA 130 (319)
T ss_pred hhhcCCCcchhhhhhhhHHHhc
Confidence 3655554 5555444444433
No 192
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.43 E-value=6.8e-07 Score=95.55 Aligned_cols=56 Identities=13% Similarity=0.275 Sum_probs=47.2
Q ss_pred CCccCCCeeeeceeeeeeEECCCCEEc-ceeEeecEEcCCcEECCCCEEeeeEEeCC
Q 009720 390 SPRFLPPTKIDNCRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGA 445 (527)
Q Consensus 390 ~~~~~~p~~i~~~~i~~s~I~~g~~I~-~~~i~~svIg~~~~I~~~~~I~~~~i~~~ 445 (527)
.+.+.+++.|.+++|.+|+|+++|.|+ ++.|++|+|+++|+|+++|+|.+++++.+
T Consensus 315 ~~~ig~~~~I~~~~i~~svIg~~~~I~~~~~i~~sii~~~~~i~~~~~i~~~ii~~~ 371 (407)
T PRK00844 315 DSLVSAGSIISGATVRNSVLSPNVVVESGAEVEDSVLMDGVRIGRGAVVRRAILDKN 371 (407)
T ss_pred eCEEcCCCEECCeeeEcCEECCCCEECCCCEEeeeEECCCCEECCCCEEEeeEECCC
Confidence 355667788877888889999999998 58889999999999999999998877766
No 193
>TIGR01172 cysE serine O-acetyltransferase. Cysteine biosynthesis
Probab=98.42 E-value=8.1e-07 Score=82.90 Aligned_cols=37 Identities=27% Similarity=0.445 Sum_probs=17.9
Q ss_pred eeEECCCCEEcceeEeecEEcCCcEECCCCEEeeeEEeC
Q 009720 406 DAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLG 444 (527)
Q Consensus 406 ~s~I~~g~~I~~~~i~~svIg~~~~I~~~~~I~~~~i~~ 444 (527)
++.||++++|+.. ..++||++|.||++|.|...+.++
T Consensus 67 ~~~Ig~~~~i~~~--~g~~Ig~~~~IG~~~~I~~~v~ig 103 (162)
T TIGR01172 67 GARIGRGVFIDHG--TGVVIGETAVIGDDVTIYHGVTLG 103 (162)
T ss_pred CCEECCCeEECCC--CeEEECCCCEECCCCEEcCCCEEC
Confidence 3445555555421 124555555555555555444444
No 194
>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.41 E-value=1.3e-06 Score=81.41 Aligned_cols=109 Identities=15% Similarity=0.195 Sum_probs=50.1
Q ss_pred eeEECCCCEEcceeEeecEEcC---CcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCcEEe-eeEEcCC
Q 009720 406 DAIISHGCFLRECTVEHSIVGE---RSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR-NCIIDKN 481 (527)
Q Consensus 406 ~s~I~~g~~I~~~~i~~svIg~---~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~-~~iI~~~ 481 (527)
+..|+++|+|++. ++|.. .++||++|.|.+.+.+.+..+.... ..+ ..|+.||+++.|. +|++ .+
T Consensus 21 ~I~ig~~~~I~~~----~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~---~~~---~~~v~Ig~~~~Ig~~~~i-~~ 89 (161)
T cd03359 21 NIVLNGKTIIQSD----VIIRGDLATVSIGRYCILSEGCVIRPPFKKFSK---GVA---FFPLHIGDYVFIGENCVV-NA 89 (161)
T ss_pred CEEECCceEEcCC----CEEeCCCcceEECCCcEECCCCEEeCCccccCC---Ccc---ccCeEECCccEECCCCEE-Ee
Confidence 4556666666642 23332 2567777777655555442110000 000 0124455554443 2222 23
Q ss_pred CEECCCcEEeCCCCcCCCccCCCceEEecCeEEEccCCEeCCCcc
Q 009720 482 VKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMV 526 (527)
Q Consensus 482 ~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g~~vi~~~~~I~~g~v 526 (527)
+.|++++.|.....++++..+++++.|..| ++|.+++.|+++++
T Consensus 90 ~~Ig~~v~Ig~~~~Ig~~~~I~~~~~i~~g-~~V~~~~~i~~~~v 133 (161)
T cd03359 90 AQIGSYVHIGKNCVIGRRCIIKDCVKILDG-TVVPPDTVIPPYSV 133 (161)
T ss_pred eEEcCCcEECCCCEEcCCCEECCCcEECCC-CEECCCCEeCCCCE
Confidence 445555555544444455555555555554 33455555555544
No 195
>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional
Probab=98.40 E-value=2.1e-06 Score=82.30 Aligned_cols=33 Identities=12% Similarity=0.241 Sum_probs=22.3
Q ss_pred eEECCCCEEcc-eeE---eecEEcCCcEECCCCEEee
Q 009720 407 AIISHGCFLRE-CTV---EHSIVGERSRLDYGVELKD 439 (527)
Q Consensus 407 s~I~~g~~I~~-~~i---~~svIg~~~~I~~~~~I~~ 439 (527)
..||++|.|++ +.| ..+.||++|.|++++.|.+
T Consensus 66 i~IG~~v~Ig~~v~I~~~~~v~IG~~v~Ig~~v~I~~ 102 (192)
T PRK09677 66 LFFGDNVQVNDYVHIACIESITIGRDTLIASKVFITD 102 (192)
T ss_pred EEECCCCEECCCcEEccCceEEECCCCEECCCeEEEC
Confidence 56666666663 444 2567888888888887765
No 196
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=98.39 E-value=9.9e-07 Score=95.15 Aligned_cols=76 Identities=17% Similarity=0.294 Sum_probs=42.2
Q ss_pred CEEcceeEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCcEEeeeEEcC------------
Q 009720 413 CFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDK------------ 480 (527)
Q Consensus 413 ~~I~~~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~iI~~------------ 480 (527)
+.+..+.|.+|+|+++|+|+ +|.|++++++.+ +.||++|+|.+|+|..
T Consensus 306 ~~~~~~~i~~s~I~~~~~I~-~~~I~~svI~~~-------------------~~Ig~~~~I~~sii~g~~~~~~~~~~~~ 365 (436)
T PLN02241 306 SKIEDCRITDSIISHGCFLR-ECKIEHSVVGLR-------------------SRIGEGVEIEDTVMMGADYYETEEEIAS 365 (436)
T ss_pred cEecCCeEEEeEEcCCcEEc-CeEEEeeEEcCC-------------------CEECCCCEEEEeEEECCCcccccccccc
Confidence 33333444456666666666 666666655554 6666666666666633
Q ss_pred ----C---CEECCCcEEeCCCCcCCCccCCCceEEe
Q 009720 481 ----N---VKIGKDVVIVNKDDVQEADRPELGFYIR 509 (527)
Q Consensus 481 ----~---~~Ig~~~~i~~~~~v~~~~~~~~~~~i~ 509 (527)
+ ++||++++|.+. .+.+++.+++++.|.
T Consensus 366 ~~~~~~~~~~Ig~~~~i~~~-vI~~~v~Ig~~~~i~ 400 (436)
T PLN02241 366 LLAEGKVPIGIGENTKIRNA-IIDKNARIGKNVVII 400 (436)
T ss_pred ccccCCcceEECCCCEEcce-EecCCCEECCCcEEe
Confidence 1 256666666543 255555555555553
No 197
>PRK10502 putative acyl transferase; Provisional
Probab=98.39 E-value=1.5e-06 Score=82.75 Aligned_cols=78 Identities=17% Similarity=0.253 Sum_probs=40.8
Q ss_pred eEECCCCEEcc-eeE---eecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCcEEe-eeEEcCC
Q 009720 407 AIISHGCFLRE-CTV---EHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR-NCIIDKN 481 (527)
Q Consensus 407 s~I~~g~~I~~-~~i---~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~-~~iI~~~ 481 (527)
..||++|.|++ +.| ..++||++|.|+++|.|.... +++... ...+.. -|+.||+++.|. +|+|..+
T Consensus 72 ~~IG~~~~Ig~~~~I~~~~~v~IG~~~~I~~~~~I~~~~---h~~~~~---~~~~~~---~~i~Igd~~~Ig~~a~I~~G 142 (182)
T PRK10502 72 LTIGDYAWIGDDVWLYNLGEITIGAHCVISQKSYLCTGS---HDYSDP---HFDLNT---APIVIGEGCWLAADVFVAPG 142 (182)
T ss_pred EEECCCeEECCCceecccCceEECCCcEECCCeEEECCC---CCCcCC---Cccccc---CCEEEcCCcEEcCCCEEcCC
Confidence 44555555553 333 246788888888888775321 111100 011111 236677766663 5666666
Q ss_pred CEECCCcEEeCC
Q 009720 482 VKIGKDVVIVNK 493 (527)
Q Consensus 482 ~~Ig~~~~i~~~ 493 (527)
++||+++.|+..
T Consensus 143 v~Ig~~~vIga~ 154 (182)
T PRK10502 143 VTIGSGAVVGAR 154 (182)
T ss_pred CEECCCCEECCC
Confidence 666666666543
No 198
>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.
Probab=98.38 E-value=1.8e-06 Score=69.21 Aligned_cols=34 Identities=12% Similarity=0.350 Sum_probs=22.4
Q ss_pred EECCCCEEcc-eeEe-ecEEcCCcEECCCCEEeeeE
Q 009720 408 IISHGCFLRE-CTVE-HSIVGERSRLDYGVELKDTV 441 (527)
Q Consensus 408 ~I~~g~~I~~-~~i~-~svIg~~~~I~~~~~I~~~~ 441 (527)
.|+++|.|++ +.|. +++||++|.|+++|.|.+..
T Consensus 2 ~ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~ 37 (78)
T cd00208 2 FIGEGVKIHPKAVIRGPVVIGDNVNIGPGAVIGAAT 37 (78)
T ss_pred EECCCeEECCCCEEeCcEEECCCCEECCCCEEEecc
Confidence 4555555553 3343 37888888888888887764
No 199
>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain. WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.
Probab=98.35 E-value=1.6e-06 Score=75.93 Aligned_cols=80 Identities=15% Similarity=0.244 Sum_probs=42.6
Q ss_pred eEECCCCEEcceeEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCcEEeeeEEc-------
Q 009720 407 AIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIID------- 479 (527)
Q Consensus 407 s~I~~g~~I~~~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~iI~------- 479 (527)
+.|+++++|++ +++||++|.|++++.|.+...++.+ +.|+.++.+.++++.
T Consensus 5 ~~I~~~~~i~~----~~~Ig~~~~I~~~~~i~~~~~Ig~~------------------~~I~~~~~i~~~~~~~~~~~~~ 62 (119)
T cd03358 5 CIIGTNVFIEN----DVKIGDNVKIQSNVSIYEGVTIEDD------------------VFIGPNVVFTNDLYPRSKIYRK 62 (119)
T ss_pred CEECCCcEECC----CcEECCCcEECCCcEEeCCeEECCC------------------cEEcCCeEEecCCCCccccccc
Confidence 44444444442 4677777888777777544444443 666666666654433
Q ss_pred ---CCCEECCCcEEeCCCCcCCCccCCCceEE
Q 009720 480 ---KNVKIGKDVVIVNKDDVQEADRPELGFYI 508 (527)
Q Consensus 480 ---~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i 508 (527)
.++.||+++.|.+...+.+...++++..|
T Consensus 63 ~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~i 94 (119)
T cd03358 63 WELKGTTVKRGASIGANATILPGVTIGEYALV 94 (119)
T ss_pred cccCCcEECCCcEECcCCEEeCCcEECCCCEE
Confidence 33445555555554434333333333333
No 200
>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.
Probab=98.34 E-value=2.4e-06 Score=68.49 Aligned_cols=52 Identities=27% Similarity=0.528 Sum_probs=31.3
Q ss_pred cEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCcEEee---------eEEcCCCEECCCcEEeC
Q 009720 423 SIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRN---------CIIDKNVKIGKDVVIVN 492 (527)
Q Consensus 423 svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~---------~iI~~~~~Ig~~~~i~~ 492 (527)
+.||+++.|++++.|.+.+.++.+ +.|++++.|.+ +.|++++.|+.++.+..
T Consensus 1 ~~ig~~~~i~~~~~i~~~~~Ig~~------------------~~I~~~~~i~~~~~~~~~~~~~ig~~~~v~~~~~i~~ 61 (78)
T cd00208 1 VFIGEGVKIHPKAVIRGPVVIGDN------------------VNIGPGAVIGAATGPNEKNPTIIGDNVEIGANAVIHG 61 (78)
T ss_pred CEECCCeEECCCCEEeCcEEECCC------------------CEECCCCEEEeccCCCccCCcEECCCcEECCCCEEeC
Confidence 356667777777777664555544 66777666664 45555555555555543
No 201
>PLN02357 serine acetyltransferase
Probab=98.34 E-value=1.4e-06 Score=90.11 Aligned_cols=80 Identities=26% Similarity=0.418 Sum_probs=43.2
Q ss_pred eEECCCCEEcceeEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCcEE-eeeEEcCCCEEC
Q 009720 407 AIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKI-RNCIIDKNVKIG 485 (527)
Q Consensus 407 s~I~~g~~I~~~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I-~~~iI~~~~~Ig 485 (527)
+.||.|++|... ..++||++++||++|.|..++.++....+. ......++++ +.||.|+.| .+..||+++.||
T Consensus 233 a~IG~Gv~Idh~--~giVIGe~avIGdnV~I~~gVtIGg~g~~~-g~~~piIGd~---V~IGagA~IlggV~IGdga~IG 306 (360)
T PLN02357 233 AKIGQGILLDHA--TGVVIGETAVVGNNVSILHNVTLGGTGKQS-GDRHPKIGDG---VLIGAGTCILGNITIGEGAKIG 306 (360)
T ss_pred CEECCCeEECCC--CceEECCCCEECCCCEEeCCceecCccccC-CccCceeCCC---eEECCceEEECCeEECCCCEEC
Confidence 444555555421 124566666666666665555555421110 1123445555 677777666 467777777777
Q ss_pred CCcEEeC
Q 009720 486 KDVVIVN 492 (527)
Q Consensus 486 ~~~~i~~ 492 (527)
+++++..
T Consensus 307 AgSVV~~ 313 (360)
T PLN02357 307 AGSVVLK 313 (360)
T ss_pred CCCEECc
Confidence 7777764
No 202
>PRK09527 lacA galactoside O-acetyltransferase; Reviewed
Probab=98.32 E-value=3e-06 Score=81.87 Aligned_cols=103 Identities=21% Similarity=0.261 Sum_probs=54.3
Q ss_pred CCCCCccCCCeeeeceeeeeeEECCCCEEc-ceeE---eecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCc
Q 009720 387 FYTSPRFLPPTKIDNCRIKDAIISHGCFLR-ECTV---EHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGK 462 (527)
Q Consensus 387 i~~~~~~~~p~~i~~~~i~~s~I~~g~~I~-~~~i---~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~ 462 (527)
+...+.+.||..+.-. .+..||++|+|. +|.| .+..||++|.|+++|.|... ++.. . ......-..-.
T Consensus 58 ig~~~~I~~~~~~~~g--~ni~IG~~v~In~~~~I~d~~~I~IGd~v~Ig~~v~I~~~---~h~~-~--~~~r~~g~~~~ 129 (203)
T PRK09527 58 VGENAWVEPPVYFSYG--SNIHIGRNFYANFNLTIVDDYTVTIGDNVLIAPNVTLSVT---GHPV-H--HELRKNGEMYS 129 (203)
T ss_pred cCCCcEEcCCEEEeeC--CCcEEcCCcEECCCcEEecCCCEEECCCCEECCCCEEEeC---CCCC-C--hhhcccccccc
Confidence 3445556667665310 255666666666 3444 23689999999999988642 1110 0 00000000001
Q ss_pred cceEeCCCcEEe-eeEEcCCCEECCCcEEeCCCCcC
Q 009720 463 VPIGVGRNTKIR-NCIIDKNVKIGKDVVIVNKDDVQ 497 (527)
Q Consensus 463 ~~~~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~~~~v~ 497 (527)
-|+.||+++.|. +|+|..+++||++++|+.+..|.
T Consensus 130 ~pi~IGd~v~IG~~~~I~~gv~IG~~~vIgagsvV~ 165 (203)
T PRK09527 130 FPITIGNNVWIGSHVVINPGVTIGDNSVIGAGSVVT 165 (203)
T ss_pred CCeEECCCcEECCCCEEcCCCEECCCCEECCCCEEc
Confidence 246777766663 56666666666666665554333
No 203
>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=1.5e-06 Score=86.26 Aligned_cols=63 Identities=19% Similarity=0.357 Sum_probs=52.9
Q ss_pred cCCCCCCCCCCCccCCCeeee-------ceeeeeeEECCCCEEc-ceeEeecEEcCCcEECCCCEEeeeEE
Q 009720 380 FYDPKTPFYTSPRFLPPTKID-------NCRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVM 442 (527)
Q Consensus 380 ~~~~~~~i~~~~~~~~p~~i~-------~~~i~~s~I~~g~~I~-~~~i~~svIg~~~~I~~~~~I~~~~i 442 (527)
|++|++.+++++.+.|++.|. ++++.+|+|-++|.|. +++|-||+||.+|.||.+++++..-.
T Consensus 290 yIhPsakvhptAkiGPNVSIga~vrvg~GvRl~~sIIl~d~ei~enavVl~sIigw~s~iGrWaRVe~~pv 360 (407)
T KOG1460|consen 290 YIHPSAKVHPTAKIGPNVSIGANVRVGPGVRLRESIILDDAEIEENAVVLHSIIGWKSSIGRWARVEGIPV 360 (407)
T ss_pred EEcCcceeCCccccCCCceecCCceecCCceeeeeeeccCcEeeccceEEeeeecccccccceeeeccccc
Confidence 677888888888877777774 3777899999999999 48899999999999999999987533
No 204
>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.
Probab=98.30 E-value=2.7e-06 Score=73.13 Aligned_cols=33 Identities=18% Similarity=0.377 Sum_probs=22.3
Q ss_pred eeEECCCCEEcceeEeecEEcCCcEECCCCEEeee
Q 009720 406 DAIISHGCFLRECTVEHSIVGERSRLDYGVELKDT 440 (527)
Q Consensus 406 ~s~I~~g~~I~~~~i~~svIg~~~~I~~~~~I~~~ 440 (527)
++.|+++|.|.+. ..+.||++|.|+++|.|.++
T Consensus 7 ~~~I~~~~~i~~~--~~v~IG~~~~Ig~~~~i~~~ 39 (109)
T cd04647 7 NVYIGPGCVISAG--GGITIGDNVLIGPNVTIYDH 39 (109)
T ss_pred CcEECCCCEEecC--CceEECCCCEECCCCEEECC
Confidence 4444555544421 25889999999999999876
No 205
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=98.30 E-value=2.6e-06 Score=89.15 Aligned_cols=92 Identities=13% Similarity=0.130 Sum_probs=51.3
Q ss_pred eeEECCCCEEcceeEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCcEEe-----eeEEcC
Q 009720 406 DAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR-----NCIIDK 480 (527)
Q Consensus 406 ~s~I~~g~~I~~~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~-----~~iI~~ 480 (527)
.+.|+++|.|. +|+|+..|.||++|+|++++++++ +.||++|+|. +|+|++
T Consensus 254 ~~~i~~~~~i~-----~~~i~~~~~Ig~~~~I~~~~i~~~-------------------~~Ig~~~~i~~~~i~~s~i~~ 309 (353)
T TIGR01208 254 RVVVGEGAKIV-----NSVIRGPAVIGEDCIIENSYIGPY-------------------TSIGEGVVIRDAEVEHSIVLD 309 (353)
T ss_pred CEEECCCCEEe-----CCEEECCcEECCCCEEcCcEECCC-------------------CEECCCCEEeeeEEEeeEEcC
Confidence 34555555553 466767777777777777776665 5666666655 455555
Q ss_pred CCEECCCc-EEeCCCCcCCCccCCCceEEecC-eEEEccCCEeC
Q 009720 481 NVKIGKDV-VIVNKDDVQEADRPELGFYIRSG-ITIIMEKATIE 522 (527)
Q Consensus 481 ~~~Ig~~~-~i~~~~~v~~~~~~~~~~~i~~g-~~vi~~~~~I~ 522 (527)
+++|+.+. .+.+ ..++++++++++..+.+. ..++|.+++|+
T Consensus 310 ~~~i~~~~~~~~~-~ii~~~~~i~~~~~~~~~~~~~~g~~~~~~ 352 (353)
T TIGR01208 310 ESVIEGVQARIVD-SVIGKKVRIKGNRRRPGDLRLTIGDYSQVE 352 (353)
T ss_pred CCEEcCCcceeec-CEEcCCCEECCCcccccccceEEcCCceec
Confidence 55555442 3332 234455555555555321 23456666553
No 206
>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]
Probab=98.29 E-value=2.9e-06 Score=79.08 Aligned_cols=54 Identities=22% Similarity=0.342 Sum_probs=29.3
Q ss_pred CCccCCCeeeec--eeeeeeEECCCCEEcc-eeEeecEEcCCcEECCCCEEeeeEEeCC
Q 009720 390 SPRFLPPTKIDN--CRIKDAIISHGCFLRE-CTVEHSIVGERSRLDYGVELKDTVMLGA 445 (527)
Q Consensus 390 ~~~~~~p~~i~~--~~i~~s~I~~g~~I~~-~~i~~svIg~~~~I~~~~~I~~~~i~~~ 445 (527)
.|.+.+++.|++ ..|.|..|++++.|.+ +.++--. ..-+||++|-|++.+++..
T Consensus 11 ~P~i~~~a~Va~~A~viGdV~Ig~~vsIw~~aVlRgD~--~~I~IG~~tNIQDg~ViH~ 67 (176)
T COG0663 11 SPKIDPTAFVAPSATVIGDVRIGAGVSIWPGAVLRGDV--EPIRIGARTNIQDGVVIHA 67 (176)
T ss_pred CCCCCCceEECCCCEEEEeEEECCCCEECCceEEEccC--CceEECCCceecCCeEEec
Confidence 455666666654 2335666666666664 2222222 4556666666666666554
No 207
>PF01704 UDPGP: UTP--glucose-1-phosphate uridylyltransferase; InterPro: IPR002618 This family consists of UTP--glucose-1-phosphate uridylyltransferases (2.7.7.9 from EC). Also known as UDP-glucose pyrophosphorylase (UDPGP) and Glucose-1-phosphate uridylyltransferase. UTP--glucose-1-phosphate uridylyltransferase catalyses the interconversion of MgUTP + glucose-1-phosphate and UDP-glucose + MgPPi []. UDP-glucose is an important intermediate in mammalian carbohydrate interconversion involved in various metabolic roles depending on tissue type []. In Dictyostelium discoideum (Slime mold), mutants in this enzyme abort the development cycle []. Also within this family is UDP-N-acetylglucosamine pyrophosphorylase (Q16222 from SWISSPROT) [] and two hypothetical proteins from Borrelia burgdorferi, the Lyme disease spirochaete (O51893 from SWISSPROT and O51036 from SWISSPROT).; GO: 0016779 nucleotidyltransferase activity, 0008152 metabolic process; PDB: 2OEG_A 2OEF_A 2YQS_A 2YQJ_A 2YQH_B 2YQC_A 3OH4_A 3OGZ_A 3OH3_A 3OH1_A ....
Probab=98.29 E-value=3.1e-05 Score=82.76 Aligned_cols=215 Identities=20% Similarity=0.330 Sum_probs=126.9
Q ss_pred CCceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHH----cCCC-EEEEEeccC-chhHHHHHHHhhcc
Q 009720 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCIN----SGIN-KIFVLTQFN-SASLNRHIARTYFG 165 (527)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~----~Gi~-~I~Iv~~~~-~~~i~~hl~~~y~~ 165 (527)
.+++.+|+||||.||||+ ..-||.|+||.....+++..++++.. .|.+ ..+|.+.++ .++..+++.+ |++
T Consensus 54 ~~kvavl~LaGGlGTrlG---~~~pK~~~~v~~~~t~ldl~~~qi~~l~~~~~~~iPl~iMtS~~T~~~T~~~l~k-yfg 129 (420)
T PF01704_consen 54 LGKVAVLKLAGGLGTRLG---CSGPKGLIPVREGKTFLDLIVEQIEALNKKYGVDIPLYIMTSFNTHEDTRKFLEK-YFG 129 (420)
T ss_dssp TTCEEEEEEEESBSGCCT---ESSBGGGSEEETTEEHHHHHHHHHHHHHHHHTTT-EEEEEEETTTHHHHHHHHHH-GCG
T ss_pred hCCEEEEEEcCcccCccC---CCCCCcceecCCcccHHHHHHHHHHHHhccccccceEEEecCcccHHHHHHHHHH-hcC
Confidence 578899999999999997 56899999996544899998888765 2433 567777764 5678888865 866
Q ss_pred CCcc---cCCCeEEEeccccC-C-CC------CCCCc-ccChHHHHHHHH--HHHHhhhcCCCCeEEEEcCceeecCCHH
Q 009720 166 NGTN---FGDGFVEVLAATQT-P-GE------SGKNW-FQGTADAVRQFT--WVFEDAKNRNIENVAILCGDHLYRMDYM 231 (527)
Q Consensus 166 ~~~~---~~~~~V~vl~~~q~-~-~~------~~~~~-~~Gta~al~~a~--~~l~~~~~~~~e~~Lvl~gD~l~~~dl~ 231 (527)
.... |.++.+..+..... + .. ....| |-|.|+...... ..++++...+.+.+.+.+.|.|...-=-
T Consensus 130 ~~~~v~~F~Q~~~P~i~~d~~~~l~~~~~~~~~~~~w~P~GhGdi~~aL~~sG~Ld~l~~~G~eyifv~nvDNL~a~~Dp 209 (420)
T PF01704_consen 130 LDVDVFFFKQSKLPAIDADGKLPLESKPKDSIAEDEWYPPGHGDIYRALYNSGLLDKLLARGIEYIFVSNVDNLGAVVDP 209 (420)
T ss_dssp SSCCEEEEEE-EEEEEETTTTCBEEETTEESEEEGGEEE-TGGGHHHHHHHTTHHHHHHHTT--EEEEEETTBTT-TT-H
T ss_pred CCcceEEEeecCcceEeCCCccccccccccccchhhccCCCCcceehhhhccChHHHHHHcCCeEEEEEecCCcccccCH
Confidence 4322 11222222221110 0 00 00123 347776544332 3566665678899999999997654334
Q ss_pred HHHHHHHHcCCcEEEEEEEcCCCCCCCceEE-EECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeE
Q 009720 232 DFIQSHVDRDADITISCAAVGESRASDYGLV-KIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGV 310 (527)
Q Consensus 232 ~ll~~h~~~~ad~tv~~~~~~~~~~~~~g~v-~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GI 310 (527)
.++..+.+.++++.+-+.+...+. .+-|++ ..|..-++.++.+-|.... ..+.. .....+.++|-
T Consensus 210 ~~lG~~~~~~~~~~~evv~Kt~~d-ek~Gvl~~~~G~~~vvEysqip~~~~-~~~~~------------~~~~~~FntnN 275 (420)
T PF01704_consen 210 VFLGYMIEKNADFGMEVVPKTSPD-EKGGVLCRYDGKLQVVEYSQIPKEHM-AEFKD------------IKGFLLFNTNN 275 (420)
T ss_dssp HHHHHHHHTT-SEEEEEEE-CSTT-TSSEEEEEETTEEEEEEGGGS-HHGH-HHHTS------------TTTSBEEEEEE
T ss_pred HHHHHHHhccchhheeeeecCCCC-CceeEEEEeCCccEEEEeccCCHHHH-Hhhhc------------cccceEEEece
Confidence 578888889999988887765432 234544 4433233444444443211 01100 01224568888
Q ss_pred EEEeHHHHHHHHHh
Q 009720 311 YVFKKDVLFKLLRW 324 (527)
Q Consensus 311 Yif~~~iL~~ll~~ 324 (527)
-.|+-+.|.++++.
T Consensus 276 i~~~l~~l~~~~~~ 289 (420)
T PF01704_consen 276 IWFSLDFLKRLLER 289 (420)
T ss_dssp EEEEHHHHHHHHHT
T ss_pred eeEEHHHHHHHHHh
Confidence 89999999888765
No 208
>cd00897 UGPase_euk Eukaryotic UGPase catalyses the synthesis of UDP-Glucose. UGPase (UDP-Glucose Pyrophosphorylase) catalyzes the reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids, glycoproteins, and proteoglycans. UGPase is found in both prokaryotes and eukaryotes. Interestingly, while the prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. This family consists of mainly eukaryotic UTP-glucose-1-phosphate uridylyltransferases.
Probab=98.27 E-value=0.00011 Score=75.04 Aligned_cols=214 Identities=13% Similarity=0.204 Sum_probs=128.5
Q ss_pred CceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHc----CCC-EEEEEeccC-chhHHHHHHHhhccC
Q 009720 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINS----GIN-KIFVLTQFN-SASLNRHIARTYFGN 166 (527)
Q Consensus 93 ~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~----Gi~-~I~Iv~~~~-~~~i~~hl~~~y~~~ 166 (527)
+++.+|+||||.||||+ ..-||.|+||....+++++.++++... |.. ..+|.|.+. .++..+++. +|-..
T Consensus 2 ~kvavl~LaGG~GTRLG---~~~pKg~~~v~~~~s~l~l~~~~i~~l~~~~~~~iPl~iMtS~~T~~~T~~~l~-~~~~~ 77 (300)
T cd00897 2 NKLVVLKLNGGLGTSMG---CTGPKSLIEVRDGKTFLDLTVQQIEHLNKTYGVDVPLVLMNSFNTDEDTKKILK-KYAGV 77 (300)
T ss_pred CcEEEEEecCCcccccC---CCCCceeeecCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCCcchHHHHHHHH-HcCCC
Confidence 46789999999999995 568999999953338999999998653 432 567777765 566778885 34111
Q ss_pred Cc---ccCCCeEEEeccc------cCCCCCCCCc-ccChHHHHHHHH--HHHHhhhcCCCCeEEEEcCceeecCCHHHHH
Q 009720 167 GT---NFGDGFVEVLAAT------QTPGESGKNW-FQGTADAVRQFT--WVFEDAKNRNIENVAILCGDHLYRMDYMDFI 234 (527)
Q Consensus 167 ~~---~~~~~~V~vl~~~------q~~~~~~~~~-~~Gta~al~~a~--~~l~~~~~~~~e~~Lvl~gD~l~~~dl~~ll 234 (527)
.. .|.++.+..+... +..+.....| +-|.++...... ..++++...+.+.+.+.+.|++...-=-.|+
T Consensus 78 ~~~v~~F~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhG~i~~aL~~sG~L~~l~~~G~~yi~v~nvDNL~a~~Dp~~l 157 (300)
T cd00897 78 NVDIHTFNQSRYPRISKETLLPVPSWADSPDEEWYPPGHGDIFESLYNSGLLDTLLAQGKEYLFVSNIDNLGATVDLRIL 157 (300)
T ss_pred ccCeEEEecCCcccCccccCccccccCCCcceeeccCCCchHHHHHHHCCcHHHHHhcCCEEEEEEecccccccCCHHHH
Confidence 11 1111111111100 0000011122 356766544332 2355555677899999999997642224578
Q ss_pred HHHHHcCCcEEEEEEEcCCCCCCCceE-EEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEEEE
Q 009720 235 QSHVDRDADITISCAAVGESRASDYGL-VKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVF 313 (527)
Q Consensus 235 ~~h~~~~ad~tv~~~~~~~~~~~~~g~-v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIYif 313 (527)
-.|.++++++++=+.+...+. .+-|. +..|..-+|.++.|-|.....+ .. + ...-.+.+++.+.|
T Consensus 158 g~~~~~~~~~~~evv~Kt~~d-ek~G~l~~~~g~~~vvEyse~p~e~~~~-~~-~-----------~~~~~~~nt~n~~~ 223 (300)
T cd00897 158 NHMVDNKAEYIMEVTDKTRAD-VKGGTLIQYEGKLRLLEIAQVPKEHVDE-FK-S-----------IKKFKIFNTNNLWV 223 (300)
T ss_pred HHHHhcCCceEEEEeecCCCC-CcccEEEEECCEEEEEEeccCCHHHHHh-hc-C-----------cccceEEEEeEEEE
Confidence 888899999887666554432 23454 4445444577777766543210 00 0 01124678999999
Q ss_pred eHHHHHHHHHh
Q 009720 314 KKDVLFKLLRW 324 (527)
Q Consensus 314 ~~~iL~~ll~~ 324 (527)
+-+.|.++++.
T Consensus 224 ~l~~L~~~~~~ 234 (300)
T cd00897 224 NLKAVKRVVEE 234 (300)
T ss_pred EHHHHHHHHHh
Confidence 99999877654
No 209
>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH. THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.
Probab=98.27 E-value=3.3e-06 Score=76.67 Aligned_cols=37 Identities=14% Similarity=0.165 Sum_probs=18.4
Q ss_pred eeEECCCCEEcceeEeecEEcCCcEECCCCEEe----eeEEeCCc
Q 009720 406 DAIISHGCFLRECTVEHSIVGERSRLDYGVELK----DTVMLGAD 446 (527)
Q Consensus 406 ~s~I~~g~~I~~~~i~~svIg~~~~I~~~~~I~----~~~i~~~~ 446 (527)
.+.||+|++|-. +++|..+++||++|.|. ..+..++|
T Consensus 13 ~a~IG~GtvI~~----gavV~~~a~IG~~~iIn~~ig~~a~Ighd 53 (147)
T cd04649 13 GAYLAEGTTVMH----EGFVNFNAGTLGNCMVEGRISSGVIVGKG 53 (147)
T ss_pred CCEECCCcEECC----CCEEccCCEECCCeEECCcccCCEEECCC
Confidence 344555555542 24555555555555554 44445554
No 210
>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine. This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.
Probab=98.22 E-value=4.6e-06 Score=71.23 Aligned_cols=62 Identities=24% Similarity=0.366 Sum_probs=34.8
Q ss_pred eeEECCCCEEcceeEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCcE---EeeeEEcCCC
Q 009720 406 DAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTK---IRNCIIDKNV 482 (527)
Q Consensus 406 ~s~I~~g~~I~~~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~---I~~~iI~~~~ 482 (527)
++.|+++++|... .+++||+++.|+++|.|... +.|++++. +..++|++++
T Consensus 8 ~~~ig~~~~i~~~--~~~~ig~~~~Ig~~~~i~~~------------------------~~i~~~~~~~~~~~~~Ig~~~ 61 (101)
T cd03354 8 GAKIGPGLFIDHG--TGIVIGETAVIGDNCTIYQG------------------------VTLGGKGKGGGKRHPTIGDNV 61 (101)
T ss_pred CCEECCCEEECCC--CeEEECCCCEECCCCEEcCC------------------------CEECCCccCCcCCCCEECCCc
Confidence 3444455555421 23566666777766665433 44444443 4566777777
Q ss_pred EECCCcEEeCC
Q 009720 483 KIGKDVVIVNK 493 (527)
Q Consensus 483 ~Ig~~~~i~~~ 493 (527)
.|+.++.+.+.
T Consensus 62 ~Ig~~~~i~~~ 72 (101)
T cd03354 62 VIGAGAKILGN 72 (101)
T ss_pred EEcCCCEEECc
Confidence 77777766554
No 211
>COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]
Probab=98.19 E-value=5.7e-06 Score=81.54 Aligned_cols=9 Identities=22% Similarity=0.493 Sum_probs=5.1
Q ss_pred CccCCCeee
Q 009720 391 PRFLPPTKI 399 (527)
Q Consensus 391 ~~~~~p~~i 399 (527)
.|+.|++.|
T Consensus 109 ~RI~p~a~V 117 (271)
T COG2171 109 VRIVPGAIV 117 (271)
T ss_pred eeecCccEE
Confidence 555555555
No 212
>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.
Probab=98.18 E-value=7.5e-06 Score=82.72 Aligned_cols=15 Identities=33% Similarity=0.428 Sum_probs=6.5
Q ss_pred cEEcCCcEECCCCEE
Q 009720 423 SIVGERSRLDYGVEL 437 (527)
Q Consensus 423 svIg~~~~I~~~~~I 437 (527)
++||.+|.||.+|.|
T Consensus 225 avIGhds~IG~gasI 239 (341)
T TIGR03536 225 VMVGKGSDLGGGCST 239 (341)
T ss_pred CEECCCCEECCCCEE
Confidence 344444444444444
No 213
>PLN02435 probable UDP-N-acetylglucosamine pyrophosphorylase
Probab=98.16 E-value=9.1e-05 Score=80.17 Aligned_cols=213 Identities=16% Similarity=0.227 Sum_probs=127.6
Q ss_pred CCceEEEEEeCCCCCccccCccCCCccceeeC---CcchhHHHHHHHHHHc--------------CC-CEEEEEeccC-c
Q 009720 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVA---GCYRLIDIPMSNCINS--------------GI-NKIFVLTQFN-S 152 (527)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIg---Gk~pLId~~l~~l~~~--------------Gi-~~I~Iv~~~~-~ 152 (527)
..++.+|+||||.||||+ ...||.|++|+ ++ .|++...+.+... +. =..+|.|.+. .
T Consensus 114 ~gkvavvlLAGGqGTRLG---~~~PKg~~~Iglps~k-slfql~~e~I~~lq~la~~~~~~~~~~~~~IPl~IMTS~~T~ 189 (493)
T PLN02435 114 EGKLAVVLLSGGQGTRLG---SSDPKGCFNIGLPSGK-SLFQLQAERILCVQRLAAQASSEGPGRPVTIHWYIMTSPFTD 189 (493)
T ss_pred cCCEEEEEeCCCcccccC---CCCCccceecCCCCCC-cHHHHHHHHHHHHHHHHHhhcccccCCCCceeEEEeCCcchh
Confidence 467889999999999997 56899999885 77 8999999886432 11 1457788764 5
Q ss_pred hhHHHHHHH-hhccCCcccCCCeEEEeccccC-----CC-----C--CCCCcccChHHHHHHHHH--HHHhhhcCCCCeE
Q 009720 153 ASLNRHIAR-TYFGNGTNFGDGFVEVLAATQT-----PG-----E--SGKNWFQGTADAVRQFTW--VFEDAKNRNIENV 217 (527)
Q Consensus 153 ~~i~~hl~~-~y~~~~~~~~~~~V~vl~~~q~-----~~-----~--~~~~~~~Gta~al~~a~~--~l~~~~~~~~e~~ 217 (527)
+...+++.+ .||+... ..|.+...... .+ + .-.-.|.|.|+....... .++++...+.+.+
T Consensus 190 ~~T~~ff~~~~~FGl~~----~~V~fF~Q~~~P~~~~dg~i~l~~~~~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi 265 (493)
T PLN02435 190 EATRKFFESHKYFGLEA----DQVTFFQQGTLPCVSKDGKFIMETPFKVAKAPDGNGGVYAALKSSRLLEDMASRGIKYV 265 (493)
T ss_pred HHHHHHHHhCCCCCCCc----cceEEEecCCcceECCCCCcccCCCcccccCCCCCcHHHHHHHHCCcHHHHHhcCCEEE
Confidence 667788863 4455321 11222211000 00 0 001123588776554432 4666666788999
Q ss_pred EEEcCcee-ecCCHHHHHHHHHHcCCcEEEEEEEcCCCCCCCceEEEE-CCCCc--eEEEEecCCccccccccccccccC
Q 009720 218 AILCGDHL-YRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKI-DNMGR--IAQFAEKPSGANLKAMQVDTSLLG 293 (527)
Q Consensus 218 Lvl~gD~l-~~~dl~~ll~~h~~~~ad~tv~~~~~~~~~~~~~g~v~~-D~~g~--V~~~~EKp~~~~~~~~~v~~~~~~ 293 (527)
.+.+.|++ ...---.|+-.+...+.++.+-+.+...+. ..-|++.. +.+|+ |.++.|-+..... +..-++..|
T Consensus 266 ~v~~vDN~L~~~~DP~flG~~~~~~~d~~~kVv~K~~~~-EkvG~i~~~~~~g~~~vvEYsEl~~~~~~-~~~~~~g~L- 342 (493)
T PLN02435 266 DCYGVDNALVRVADPTFLGYFIDKGVASAAKVVRKAYPQ-EKVGVFVRRGKGGPLTVVEYSELDQAMAS-AINQQTGRL- 342 (493)
T ss_pred EEEecccccccccCHHHHHHHHhcCCceEEEeeecCCCC-CceeEEEEecCCCCEEEEEeccCCHHHHh-ccCcccccc-
Confidence 99999995 443335677888888999887666543321 23465543 34555 5555554332110 000011111
Q ss_pred CCccccccCCceeeeeEEEEeHHHHHHHHH
Q 009720 294 FSPQEARKCPYVASMGVYVFKKDVLFKLLR 323 (527)
Q Consensus 294 ~~~~~~~~~~~l~~~GIYif~~~iL~~ll~ 323 (527)
.-...+++.++|+.++|.++.+
T Consensus 343 --------~~~~gnI~~h~fs~~fL~~~~~ 364 (493)
T PLN02435 343 --------RYCWSNVCLHMFTLDFLNQVAN 364 (493)
T ss_pred --------ccchhhHHHhhccHHHHHHHHH
Confidence 1256788999999999987753
No 214
>cd06424 UGGPase UGGPase catalyzes the synthesis of UDP-Glucose/UDP-Galactose. UGGPase: UDP-Galactose/Glucose Pyrophosphorylase catalyzes the reversible production of UDP-Glucose/UDP-Galactose and pyrophosphate (PPi) from Glucose-1-phosphate/Galactose-1-phosphate and UTP. Its dual substrate specificity distinguishes it from the single substrate enzyme UDP-glucose pyrophosphorylase. It may play a key role in the galactose metabolism in raffinose oligosaccharide (RFO) metabolizing plants. RFO raffinose is a major photoassimilate and is a galactosylderivative of sucrose (Suc) containing a galactose (Gal) moiety. Upon arriving at the sink tissue, the Gal moieties of the RFOs are initially removed by alpha-galactosidase and then are phosphorylated to Gal-1-P. Gal-1-P is converted to UDP-Gal. The UDP-Gal is further metabolized to UDP-Glc via an epimerase reaction. The UDP-Glc can be directly utilized in cell wall metabolism or in Suc synthesis. However, for the Suc synthesis UDP-Glc must be f
Probab=98.16 E-value=8.5e-05 Score=76.20 Aligned_cols=216 Identities=13% Similarity=0.156 Sum_probs=125.1
Q ss_pred EEEEEeCCCCCccccCccCCCccceee---CCcchhHHHHHHHHHHcC--------C-CEEEEEeccC-chhHHHHHHH-
Q 009720 96 AAIILGGGAGTKLFPLTLRAATPAVPV---AGCYRLIDIPMSNCINSG--------I-NKIFVLTQFN-SASLNRHIAR- 161 (527)
Q Consensus 96 ~aVILAaG~GtRL~PLT~~~PKpLlpI---gGk~pLId~~l~~l~~~G--------i-~~I~Iv~~~~-~~~i~~hl~~- 161 (527)
.+|+||||.||||+ ..-||.++|| .|+ +++++.++++.... . =..+|.|.+. .++..+++.+
T Consensus 2 a~vllaGG~GTRLG---~~~pKg~~~v~~~~~~-s~f~l~~~~i~~l~~~~~~~~~~~IPl~IMTS~~Th~~T~~~fe~n 77 (315)
T cd06424 2 VFVLVAGGLGERLG---YSGIKIGLPVELTTNT-TYLQYYLNYIRAFQEASKKGEKMEIPFVIMTSDDTHSKTLKLLEEN 77 (315)
T ss_pred EEEEecCCCccccC---CCCCceeeeccCCCCC-cHHHHHHHHHHHHHHHhhccCCCceeEEEECCCchhHHHHHHHHHC
Confidence 57999999999997 5789999999 488 89999999886632 1 2467888764 5667777753
Q ss_pred hhccCCcc----cCCCeEEEeccccCCC----C-C--CCCcccChHHHHHHHH--HHHHhhhcCCCCeEEEEcCceee-c
Q 009720 162 TYFGNGTN----FGDGFVEVLAATQTPG----E-S--GKNWFQGTADAVRQFT--WVFEDAKNRNIENVAILCGDHLY-R 227 (527)
Q Consensus 162 ~y~~~~~~----~~~~~V~vl~~~q~~~----~-~--~~~~~~Gta~al~~a~--~~l~~~~~~~~e~~Lvl~gD~l~-~ 227 (527)
.||+.... |.+..+..+...+..- + + ....+-|.++...... ..++++...+.+.+.+..-|... .
T Consensus 78 ~yFGl~~~~V~fF~Q~~~P~l~~~~g~l~~~l~~~~~i~~~P~GhGdiy~aL~~sGlLd~l~~~Gikyi~v~~vdN~L~~ 157 (315)
T cd06424 78 NYFGLEKDQVHILKQEKVFCLIDNDAHLALDPDNTYSILTKPHGHGDVHTLLYNSGLLKKWIEAGYKWLVFFQDTNALAF 157 (315)
T ss_pred CccCCCcccEEEEecCceEEEecCCCCcccccCCCCccccCCCCchHHHHHHHHCCcHHHHHHCCCEEEEEEecchhhhh
Confidence 44553211 1122233332110000 0 0 0112467877554432 23555555778888888888754 4
Q ss_pred CCHHHHHHHHHHcCCcEEEEEEEcCCCCCCCceEEE-EC-CCCc--e--EEEEecCCcccc---ccccccccccCCCccc
Q 009720 228 MDYMDFIQSHVDRDADITISCAAVGESRASDYGLVK-ID-NMGR--I--AQFAEKPSGANL---KAMQVDTSLLGFSPQE 298 (527)
Q Consensus 228 ~dl~~ll~~h~~~~ad~tv~~~~~~~~~~~~~g~v~-~D-~~g~--V--~~~~EKp~~~~~---~~~~v~~~~~~~~~~~ 298 (527)
.-.--|+-.+..+++++..-+.+... ...-|++. .+ .+|+ | +++.|=+..... ....++. ..+++
T Consensus 158 ~adP~fiG~~~~~~~d~~~k~v~~~~--~E~vG~~~~~~~~~g~~~v~nvEYsel~~~~~~~~~~~g~~~~-~~~~s--- 231 (315)
T cd06424 158 KAIPAVLGVSATKSLDMNSLTVPRKP--KEAIGALCKLTKNNGKSMTINVEYNQLDPLLRASGKDDGDVDD-KTGFS--- 231 (315)
T ss_pred ccChhhEEEEecCCCceEeEEEeCCC--CCceeeEEEEecCCCceEEEEEEeecCCHHHHhcCCCCCCccc-ccccc---
Confidence 33455666677788888866655333 23466553 22 3343 3 555553321100 0011110 12232
Q ss_pred cccCCceeeeeEEEEeHHHHHHHHHhh
Q 009720 299 ARKCPYVASMGVYVFKKDVLFKLLRWR 325 (527)
Q Consensus 299 ~~~~~~l~~~GIYif~~~iL~~ll~~~ 325 (527)
.+..++++++|+-+.+.+.+++.
T Consensus 232 ----~f~gNi~~~~f~l~~~~~~l~~~ 254 (315)
T cd06424 232 ----PFPGNINQLVFSLGPYMDELEKT 254 (315)
T ss_pred ----cCCCeeeeEEEeHHHHHHHHhhc
Confidence 25689999999999888777654
No 215
>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=98.16 E-value=7.5e-06 Score=76.87 Aligned_cols=35 Identities=14% Similarity=0.329 Sum_probs=22.7
Q ss_pred eeEECCCCEEcc-eeE---eecEEcCCcEECCCCEEeee
Q 009720 406 DAIISHGCFLRE-CTV---EHSIVGERSRLDYGVELKDT 440 (527)
Q Consensus 406 ~s~I~~g~~I~~-~~i---~~svIg~~~~I~~~~~I~~~ 440 (527)
+..||++|+|+. +.| .+.+||+++.|+++|.|..+
T Consensus 62 ~i~IG~~v~I~~~~~i~~~~~i~IG~~v~Ig~~~~I~~~ 100 (169)
T cd03357 62 NIHIGDNFYANFNCTILDVAPVTIGDNVLIGPNVQIYTA 100 (169)
T ss_pred cCEECCCceEcCCEEEeccCcEEECCCCEECCCCEEEeC
Confidence 345556666653 333 24688999999999888643
No 216
>PRK09527 lacA galactoside O-acetyltransferase; Reviewed
Probab=98.15 E-value=1.3e-05 Score=77.51 Aligned_cols=67 Identities=19% Similarity=0.356 Sum_probs=38.7
Q ss_pred ECCCCEEcc-eeE---eecEEcCCcEECCCCEEeee--EEeCCcccCchhhHHhhhcCCccceEeCCCcEEe--------
Q 009720 409 ISHGCFLRE-CTV---EHSIVGERSRLDYGVELKDT--VMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR-------- 474 (527)
Q Consensus 409 I~~g~~I~~-~~i---~~svIg~~~~I~~~~~I~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~-------- 474 (527)
||++++|.+ ..+ .+..||+++.|+.+|.|.+. +.+|++ +.||.++.|.
T Consensus 58 ig~~~~I~~~~~~~~g~ni~IG~~v~In~~~~I~d~~~I~IGd~------------------v~Ig~~v~I~~~~h~~~~ 119 (203)
T PRK09527 58 VGENAWVEPPVYFSYGSNIHIGRNFYANFNLTIVDDYTVTIGDN------------------VLIAPNVTLSVTGHPVHH 119 (203)
T ss_pred cCCCcEEcCCEEEeeCCCcEEcCCcEECCCcEEecCCCEEECCC------------------CEECCCCEEEeCCCCCCh
Confidence 455555552 222 35677777777777777442 555554 6666666664
Q ss_pred -----------eeEEcCCCEECCCcEEeCC
Q 009720 475 -----------NCIIDKNVKIGKDVVIVNK 493 (527)
Q Consensus 475 -----------~~iI~~~~~Ig~~~~i~~~ 493 (527)
.++||+++.||.+++|...
T Consensus 120 ~~r~~g~~~~~pi~IGd~v~IG~~~~I~~g 149 (203)
T PRK09527 120 ELRKNGEMYSFPITIGNNVWIGSHVVINPG 149 (203)
T ss_pred hhccccccccCCeEECCCcEECCCCEEcCC
Confidence 1456666666666666544
No 217
>PF02348 CTP_transf_3: Cytidylyltransferase; InterPro: IPR003329 Synonym(s): CMP-N-acetylneuraminic acid synthetase Acylneuraminate cytidylyltransferase (2.7.7.43 from EC) (CMP-NeuAc synthetase) catalyzes the reaction of CTP and NeuAc to form CMP-NeuAc, which is the nucleotide sugar donor used by sialyltransferases []. The outer membrane lipooligosaccharides of some microorganisms contain terminal sialic acid attached to N-acetyllactosamine and so this modification may be important in pathogenesis.; GO: 0009103 lipopolysaccharide biosynthetic process; PDB: 3K8D_C 1VH1_B 3K8E_C 1QWJ_A 3EWI_A 1VIC_B 3DUV_A 1VH3_C 3TQD_A 2Y6P_C ....
Probab=98.14 E-value=0.00028 Score=68.27 Aligned_cols=178 Identities=22% Similarity=0.249 Sum_probs=105.1
Q ss_pred EEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHc-CCCEEEEEeccCchhHHHHHHHhhccCCcccCCCe
Q 009720 96 AAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINS-GINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (527)
Q Consensus 96 ~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~-Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~~ 174 (527)
.|||.|-|..+|| .-|.|.+++|+ |||+|+++.+.++ .+++|+|.|. .+++.+.+. .| + ..
T Consensus 1 iaiIpAR~gS~rl------p~Knl~~l~gk-pLi~~~i~~a~~s~~~d~IvVaTd--~~~i~~~~~-~~-------g-~~ 62 (217)
T PF02348_consen 1 IAIIPARGGSKRL------PGKNLKPLGGK-PLIEYVIERAKQSKLIDEIVVATD--DEEIDDIAE-EY-------G-AK 62 (217)
T ss_dssp EEEEEE-SSSSSS------TTGGGSEETTE-EHHHHHHHHHHHTTTTSEEEEEES--SHHHHHHHH-HT-------T-SE
T ss_pred CEEEecCCCCCCC------CcchhhHhCCc-cHHHHHHHHHHhCCCCCeEEEeCC--CHHHHHHHH-Hc-------C-Ce
Confidence 3899999999999 45999999999 9999999999998 5799988885 455655553 33 2 12
Q ss_pred EEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceee-c-CCHHHHHHHHHHcCCc-EEEEEEEc
Q 009720 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY-R-MDYMDFIQSHVDRDAD-ITISCAAV 251 (527)
Q Consensus 175 V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~-~-~dl~~ll~~h~~~~ad-~tv~~~~~ 251 (527)
|.+...... .++.. ...+...+. ....+.++.+.||.-+ + ..+..+++.+.+...+ +.-...+.
T Consensus 63 v~~~~~~~~---------~~~~r-~~~~~~~~~---~~~~~~vv~~~~d~Pll~~~~i~~~i~~~~~~~~~~~~~~~~~~ 129 (217)
T PF02348_consen 63 VIFRRGSLA---------DDTDR-FIEAIKHFL---ADDEDIVVRLQGDSPLLDPTSIDRAIEDIREANEDYISNLVDPV 129 (217)
T ss_dssp EEE--TTSS---------SHHHH-HHHHHHHHT---CSTTSEEEEESTTETT--HHHHHHHHHHHHHSTTSSEEEEEEEE
T ss_pred eEEcChhhc---------CCccc-HHHHHHHhh---hhHHhhccccCCeeeECCHHHHHHHHHHHhcCchhhhccccccc
Confidence 333332211 23433 333333332 1123478888999844 3 4578999999888776 32223332
Q ss_pred CC----CCCCCceEEEECCCCceEEEEecCCccccccccccccccCCCcccccc--CCceeeeeEEEEeHH-HHH
Q 009720 252 GE----SRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARK--CPYVASMGVYVFKKD-VLF 319 (527)
Q Consensus 252 ~~----~~~~~~g~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~--~~~l~~~GIYif~~~-iL~ 319 (527)
.. ... +.-....+.++....+.+.+...... .... ..++...++|.|+.. .+.
T Consensus 130 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (217)
T PF02348_consen 130 GSSVEIFNF-NPLKVLFDDDGLELYFSEHVIPYIRR--------------NPEEFKYFYIRQVGIYAFRKEMFLE 189 (217)
T ss_dssp CSHHHHTST-TSTEEEECTTSBEEEEESSESSECHH--------------HHCSSSSTEEEEEEEEEEEHHHHHH
T ss_pred cchhhcccc-cceEEEeccccchhhcccCCCccccc--------------ccccccccccccccccccccccccc
Confidence 21 111 12223445556666666655432210 0011 125678999999997 443
No 218
>PLN02739 serine acetyltransferase
Probab=98.13 E-value=4.9e-06 Score=85.53 Aligned_cols=27 Identities=15% Similarity=0.192 Sum_probs=15.9
Q ss_pred eEeCCCcEEe-eeEEcCCCEECCCcEEe
Q 009720 465 IGVGRNTKIR-NCIIDKNVKIGKDVVIV 491 (527)
Q Consensus 465 ~~Ig~~~~I~-~~iI~~~~~Ig~~~~i~ 491 (527)
|.||.|++|- ++.||+|+.||+|+++.
T Consensus 264 V~IGagA~IlG~V~IGd~aiIGAGSVV~ 291 (355)
T PLN02739 264 ALLGACVTILGNISIGAGAMVAAGSLVL 291 (355)
T ss_pred CEEcCCCEEeCCeEECCCCEECCCCEEC
Confidence 5555555553 56666666666666664
No 219
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=98.13 E-value=2.5e-05 Score=90.26 Aligned_cols=218 Identities=16% Similarity=0.155 Sum_probs=143.4
Q ss_pred eEEEEcCceeecCC--HHHHHHHHHHcCCcEEEEEEEcCCCCCCCceEEEECCC--CceEEEEecCCccccccccccccc
Q 009720 216 NVAILCGDHLYRMD--YMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNM--GRIAQFAEKPSGANLKAMQVDTSL 291 (527)
Q Consensus 216 ~~Lvl~gD~l~~~d--l~~ll~~h~~~~ad~tv~~~~~~~~~~~~~g~v~~D~~--g~V~~~~EKp~~~~~~~~~v~~~~ 291 (527)
.+||+.||.+..++ +.+ -.++|++.+....+.+-.++.|+...|.+ +++..+..||...+..++.-
T Consensus 154 g~li~~gDv~~~f~~~~~~------~~~~~~~~~~~~~~~~~~~~HGVfv~~~~~~~~~~~~LqKps~eel~a~~~---- 223 (974)
T PRK13412 154 HTLIASGDVYIRSEQPLQD------IPEADVVCYGLWVDPSLATNHGVFVSSRKSPERLDFMLQKPSLEELGGLSK---- 223 (974)
T ss_pred ceEEEecchhhhccccccC------CCccCeEEEEeccChhhccCceEEEeCCCChHHHHHHhcCCCHHHHHhhhc----
Confidence 79999999876544 222 13467777777666666789999999887 78999999998876543321
Q ss_pred cCCCccccccCCceeeeeEEEEeHHHHHHHHHhhCCC------CCchhhhhHHhhh----------hcCceEEEEec-ce
Q 009720 292 LGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT------SNDFGSEIIPAAI----------MEHDVQAYIFR-DY 354 (527)
Q Consensus 292 ~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~~~~~------~~d~~~dii~~li----------~~~~V~~~~~~-g~ 354 (527)
....+.++|+|+|+.+....|++..+.. .-|+.+|++..+- +..++....+. +.
T Consensus 224 ---------~~~~l~D~g~~~~~~~a~~~L~~~~~~~~~~~~~~~dlY~Df~~aLg~~~~~~~~el~~l~~~i~~L~~~~ 294 (974)
T PRK13412 224 ---------THLFLMDIGIWLLSDRAVELLMKRSGKEDGGKLKYYDLYSDFGLALGTHPRIGDDELNALSVAILPLPGGE 294 (974)
T ss_pred ---------CCeEEEeeeEEEEChHHHHHHHHhhhcccCCcceeeehHHHHHHhcCCCCCcchhhhcccceEEEEcCCce
Confidence 1346789999999999887776654321 2245566655532 22455555555 45
Q ss_pred EEecCCHHHHHHHHHHhhccCCCCccCCCCCCCCCCCccCCCeeeeceeeeeeEECCCCEEcce--eEeecEEcCCcEEC
Q 009720 355 WEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLREC--TVEHSIVGERSRLD 432 (527)
Q Consensus 355 w~dIgt~~d~~~An~~ll~~~~~~~~~~~~~~i~~~~~~~~p~~i~~~~i~~s~I~~g~~I~~~--~i~~svIg~~~~I~ 432 (527)
++.+||-..|+.....+-+.. .....+.+...-..|+ +-|.||+|+.+|.+++. -|++|.||.+.+||
T Consensus 295 F~H~GTs~E~l~~~~~~q~~~------~~~~~i~~~~~~~~~~----~~v~ns~~~~~~s~~~~s~~vE~s~l~~~~~ig 364 (974)
T PRK13412 295 FYHYGTSRELISSTLAVQNLV------TDQRRIMHRKVKPHPA----MFVQNAVLSGKLTAENATLWIENSHVGEGWKLA 364 (974)
T ss_pred eEEecCcHHHhcCchhHHHHh------hhhhhhhccccCCCCc----eEEEeeEecCCcccCCCeEEEEeeEecCCeEEc
Confidence 889999998886544433221 0011111111111111 24568999999999963 36999999999999
Q ss_pred CCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCcEEeeeEEcC
Q 009720 433 YGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDK 480 (527)
Q Consensus 433 ~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~iI~~ 480 (527)
++|+|.+......+ ..|.+++.|...=++.
T Consensus 365 ~~~Iisgv~~~~~~------------------~~vP~~~ci~~vpl~~ 394 (974)
T PRK13412 365 SRSIITGVPENSWN------------------LDLPEGVCIDVVPVGD 394 (974)
T ss_pred CCcEEecccccccc------------------eecCCCcEEEEEEcCC
Confidence 99999877544443 6788888887655543
No 220
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=98.13 E-value=8.5e-06 Score=85.65 Aligned_cols=88 Identities=20% Similarity=0.258 Sum_probs=65.2
Q ss_pred CCCCCccCCCeeeec-eee-eeeEECCCCEEcc-eeEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCcc
Q 009720 387 FYTSPRFLPPTKIDN-CRI-KDAIISHGCFLRE-CTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKV 463 (527)
Q Consensus 387 i~~~~~~~~p~~i~~-~~i-~~s~I~~g~~I~~-~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~ 463 (527)
+.....+.+.+.|.+ +.| .+++||++|.|++ +.|.+|+|.++|+|+++++|.+++++.+
T Consensus 258 i~gp~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~Sii~~~~~i~~~~~i~~sIi~~~------------------ 319 (358)
T COG1208 258 IIGPVVIGPGAKIGPGALIGPYTVIGEGVTIGNGVEIKNSIIMDNVVIGHGSYIGDSIIGEN------------------ 319 (358)
T ss_pred EeCCEEECCCCEECCCCEECCCcEECCCCEECCCcEEEeeEEEcCCEECCCCEEeeeEEcCC------------------
Confidence 334444455555543 444 3799999999995 7899999999999999999999999988
Q ss_pred ceEeCCCcEEeeeEEcCCCEECCCcEEeCCCCcCCC
Q 009720 464 PIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEA 499 (527)
Q Consensus 464 ~~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~~~v~~~ 499 (527)
+.||.+. .|++ +.+|.++.+.....++..
T Consensus 320 -~~ig~~~-----~i~d-~~~g~~~~i~~g~~~~~~ 348 (358)
T COG1208 320 -CKIGASL-----IIGD-VVIGINSEILPGVVVGPG 348 (358)
T ss_pred -cEECCce-----eecc-eEecCceEEcCceEeCCC
Confidence 8999822 2777 777777777665444433
No 221
>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase []. ; GO: 0016772 transferase activity, transferring phosphorus-containing groups
Probab=98.12 E-value=2.7e-05 Score=83.35 Aligned_cols=97 Identities=19% Similarity=0.310 Sum_probs=64.6
Q ss_pred CeEEEEcCceeecCCHHHHHHHHHHcCCcEEEEEEEcCCCCCCCceEEEECCCC---------ceEEEEecCCccccccc
Q 009720 215 ENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMG---------RIAQFAEKPSGANLKAM 285 (527)
Q Consensus 215 e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tv~~~~~~~~~~~~~g~v~~D~~g---------~V~~~~EKp~~~~~~~~ 285 (527)
.-++|..+|.++...-...+.. .+++++++..+.+.+-+++.|+..+|+++ .+.+|..||...+..
T Consensus 54 pGv~V~s~D~vl~~~~~~~~~~---~~~g~~~la~p~~~~~at~HGVfv~~~~~~~~~~~~~~~v~~~L~KpS~eem~-- 128 (414)
T PF07959_consen 54 PGVLVCSGDMVLSVPDDPLIDW---DEPGVTALAHPSSLEYATNHGVFVLDRQGPDEEDLEYREVKDFLQKPSEEEMR-- 128 (414)
T ss_pred cceEEEecccccccCccccCCC---CCCCEEEEEeeCCHHHhcCCeEEEeCCCCCccccchhhhHHHhhcCCCHHHHH--
Confidence 4689999995443221222221 23678888888877667899999999998 899999999876531
Q ss_pred cccccccCCCccccccCCceeeeeEEEEeHHHHHHHHHh
Q 009720 286 QVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRW 324 (527)
Q Consensus 286 ~v~~~~~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~ 324 (527)
-...+. ........+|++.|+.+..+.++..
T Consensus 129 -~~~av~-------~~~~~~ldsG~~~~s~~~~e~L~~~ 159 (414)
T PF07959_consen 129 -ASGAVL-------PDGNVLLDSGIVFFSSKAVESLLYL 159 (414)
T ss_pred -hCCccc-------CCCcccccccceeccHHHHHHHHHh
Confidence 110000 1123456899999999877766543
No 222
>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=98.10 E-value=2e-05 Score=74.00 Aligned_cols=9 Identities=11% Similarity=0.541 Sum_probs=3.7
Q ss_pred cEEcCCcEE
Q 009720 423 SIVGERSRL 431 (527)
Q Consensus 423 svIg~~~~I 431 (527)
+.||++|.|
T Consensus 89 v~Ig~~~~I 97 (169)
T cd03357 89 VLIGPNVQI 97 (169)
T ss_pred CEECCCCEE
Confidence 344444444
No 223
>PRK10092 maltose O-acetyltransferase; Provisional
Probab=98.08 E-value=2.1e-05 Score=74.93 Aligned_cols=95 Identities=20% Similarity=0.334 Sum_probs=47.4
Q ss_pred CccCCCeeeeceee-eeeEECCCCEEc-ceeEee---cEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccce
Q 009720 391 PRFLPPTKIDNCRI-KDAIISHGCFLR-ECTVEH---SIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPI 465 (527)
Q Consensus 391 ~~~~~p~~i~~~~i-~~s~I~~g~~I~-~~~i~~---svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 465 (527)
+.+.||..+. + .+..||++++|+ +|.|-+ ..||++|.|+++|.|....-- +.. .++..-. +-.-|+
T Consensus 60 ~~i~~~~~~~---~g~~i~iG~~~~in~~~~i~d~~~I~IGd~v~I~~~v~i~t~~h~----~~~-~~~~~~~-~~~~~v 130 (183)
T PRK10092 60 AYIEPTFRCD---YGYNIFLGNNFYANFDCVMLDVCPIRIGDNCMLAPGVHIYTATHP----LDP-VARNSGA-ELGKPV 130 (183)
T ss_pred EEEeCCEEEe---ecCCcEEcCCcEECCceEEecCceEEECCCCEECCCCEEEcCCCC----CCh-HHccccc-eecCCe
Confidence 3455555432 1 245556665555 233322 378888888888888643110 000 0000000 001136
Q ss_pred EeCCCcEE-eeeEEcCCCEECCCcEEeCCC
Q 009720 466 GVGRNTKI-RNCIIDKNVKIGKDVVIVNKD 494 (527)
Q Consensus 466 ~Ig~~~~I-~~~iI~~~~~Ig~~~~i~~~~ 494 (527)
.||+++.| .+|+|..+++||++++|+...
T Consensus 131 ~IGd~v~IG~~a~I~~gv~IG~~~vIgags 160 (183)
T PRK10092 131 TIGNNVWIGGRAVINPGVTIGDNVVVASGA 160 (183)
T ss_pred EECCCcEECCCCEECCCCEECCCCEECCCC
Confidence 77776666 466666666666666665543
No 224
>COG4284 UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=98.07 E-value=0.00019 Score=76.34 Aligned_cols=212 Identities=18% Similarity=0.347 Sum_probs=129.6
Q ss_pred CCceEEEEEeCCCCCccccCccCCCccceeeC-CcchhHHHHHHHHHHc----CCC-EEEEEeccCchhHHHHH-HHhhc
Q 009720 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVA-GCYRLIDIPMSNCINS----GIN-KIFVLTQFNSASLNRHI-ARTYF 164 (527)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIg-Gk~pLId~~l~~l~~~----Gi~-~I~Iv~~~~~~~i~~hl-~~~y~ 164 (527)
-.++.+|.||||.||||+ ..-||.+++|. |+ ++++.+++.+..+ +++ ..+|.+..+.++-..++ ...|+
T Consensus 103 ~~klAvl~LaGGqGtrlG---~~gPKgl~~V~~gk-s~~dl~~~qIk~ln~~~~~~vP~~iMtS~nt~~t~s~f~~~~Y~ 178 (472)
T COG4284 103 LGKLAVLKLAGGQGTRLG---CDGPKGLFEVKDGK-SLFDLQAEQIKYLNRQYNVDVPLYIMTSLNTEETDSYFKSNDYF 178 (472)
T ss_pred cCceEEEEecCCcccccc---cCCCceeEEecCCC-cHHHHHHHHHHHHHHHhCCCCCEEEEecCCcHHHHHHHhhhhhc
Confidence 577899999999999997 45899999999 77 9999999887664 443 46777888875544444 45676
Q ss_pred cC-Ccc---cCCCeEE-EeccccCC----CCCCCCcc-cChHHHHHHHHH--HHHhhhcCCCCeEEEEcCceee-cCCHH
Q 009720 165 GN-GTN---FGDGFVE-VLAATQTP----GESGKNWF-QGTADAVRQFTW--VFEDAKNRNIENVAILCGDHLY-RMDYM 231 (527)
Q Consensus 165 ~~-~~~---~~~~~V~-vl~~~q~~----~~~~~~~~-~Gta~al~~a~~--~l~~~~~~~~e~~Lvl~gD~l~-~~dl~ 231 (527)
+. ..+ |.+..+. ++..+..+ ......|+ .|+|+-...... .++++.+.+.+.+.|.+.|.+. ..| -
T Consensus 179 ~~~k~~I~fF~Q~~~P~~~~~sg~~~~~~~~~~~~~~P~GnG~lf~aL~~SG~le~l~~~G~e~lfV~nIDNL~~~vD-~ 257 (472)
T COG4284 179 GLDKEDIFFFVQSLFPRLLSDSGLPFLESDDSNLAWYPPGNGDLFKALKSSGILEKLIAQGIEYLFVSNIDNLGATVD-L 257 (472)
T ss_pred CCCHHHeEEEecCCcceeecccCccccccCCcccccCCCCCccHHHHHHhcchHHHHHhcCceEEEEecccccccccC-H
Confidence 54 111 1111111 22111100 00101333 577654333222 5566666788999999999965 344 3
Q ss_pred HHHHHHHHcCCcEEEEEEEcCCCCCCCceEE-EECCCCceEEEEecCCccccccccccccccCCCccccccCCceee-ee
Q 009720 232 DFIQSHVDRDADITISCAAVGESRASDYGLV-KIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVAS-MG 309 (527)
Q Consensus 232 ~ll~~h~~~~ad~tv~~~~~~~~~~~~~g~v-~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~-~G 309 (527)
.++.++...+.++++=+....... .+-|++ ..|+.-||+.+.|-|.....+ ..-+ ........+ .+
T Consensus 258 ~~lg~~~~~~~e~~~e~t~Kt~a~-ekvG~Lv~~~g~~rllEysev~~~~~~~-~~s~----------~~~~~~n~Nni~ 325 (472)
T COG4284 258 KFLGFMAETNYEYLMETTDKTKAD-EKVGILVTYDGKLRLLEYSEVPNEHREE-FTSD----------GKLKYFNTNNIW 325 (472)
T ss_pred HHHHHHHhcCcceeEEEeeccccc-ccceEEEEeCCceEEEEEecCChhHhhh-hccc----------cceeeeccccce
Confidence 677888888888877665533321 345654 488888999999877642210 0000 000112344 78
Q ss_pred EEEEeHHHHHH
Q 009720 310 VYVFKKDVLFK 320 (527)
Q Consensus 310 IYif~~~iL~~ 320 (527)
+|+++.+.+.+
T Consensus 326 l~~~~~~~l~~ 336 (472)
T COG4284 326 LHLFSVKFLKE 336 (472)
T ss_pred eehhHHHHHHh
Confidence 89988887754
No 225
>PLN02830 UDP-sugar pyrophosphorylase
Probab=98.05 E-value=0.0037 Score=69.79 Aligned_cols=217 Identities=14% Similarity=0.171 Sum_probs=126.7
Q ss_pred CceEEEEEeCCCCCccccCccCCCccceeeC---CcchhHHHHHHHHHHc-----------CC-CEEEEEeccC-chhHH
Q 009720 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVA---GCYRLIDIPMSNCINS-----------GI-NKIFVLTQFN-SASLN 156 (527)
Q Consensus 93 ~~m~aVILAaG~GtRL~PLT~~~PKpLlpIg---Gk~pLId~~l~~l~~~-----------Gi-~~I~Iv~~~~-~~~i~ 156 (527)
.++..|+||||.||||+ ..-||.++|++ |+ ++++..++.+... +. =-.+|.|.++ .++..
T Consensus 127 ~kvavllLaGGlGTRLG---~~~pK~~lpv~~~~gk-t~lql~~e~I~~lq~la~~~~~~~~~~IPl~IMTS~~T~~~T~ 202 (615)
T PLN02830 127 GNAAFVLVAGGLGERLG---YSGIKVALPTETATGT-CYLQLYIESILALQERAKKRKAKKGRKIPLVIMTSDDTHARTL 202 (615)
T ss_pred CcEEEEEecCCcccccC---CCCCCcceecccCCCC-cHHHHHHHHHHHHHHHHHHhcccCCCCceEEEECCcchhHHHH
Confidence 78999999999999997 46899999983 77 8999999987654 11 2468888765 45677
Q ss_pred HHHHH-hhccCCc----ccCCCeEEEeccc-cCC--CC----CCCCcccChHHHHHHHH--HHHHhhhcCCCCeEEEEcC
Q 009720 157 RHIAR-TYFGNGT----NFGDGFVEVLAAT-QTP--GE----SGKNWFQGTADAVRQFT--WVFEDAKNRNIENVAILCG 222 (527)
Q Consensus 157 ~hl~~-~y~~~~~----~~~~~~V~vl~~~-q~~--~~----~~~~~~~Gta~al~~a~--~~l~~~~~~~~e~~Lvl~g 222 (527)
+++.+ .||+... -|.++.+..+... ... .+ .-.-.+-|.++..+... ..++++...+.+.+.+.+.
T Consensus 203 ~~~~~n~~FGl~~~~v~~F~Q~~~P~~~~~~g~~~l~~~d~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~~yi~v~~v 282 (615)
T PLN02830 203 KLLERNDYFGMDPDQVTLLKQEKVACLMDNDARLALDPNDPYKIQTKPHGHGDVHALLYSSGLLDKWLSAGKKWVVFFQD 282 (615)
T ss_pred HHHHHCCccCCCccceEEEEcCcceeEecCCCcccccCCCCCccccCCCCccHHHHHHHHCCCHHHHHHcCCEEEEEEec
Confidence 77753 3454321 1112222222211 000 00 00113457766544332 3356655678899999999
Q ss_pred ceee-cCCHHHHHHHHHHcCCcEEEEEEEcCCCCCCCceEEEE--CCCCc----eEEEEecCCccccccccccc----cc
Q 009720 223 DHLY-RMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKI--DNMGR----IAQFAEKPSGANLKAMQVDT----SL 291 (527)
Q Consensus 223 D~l~-~~dl~~ll~~h~~~~ad~tv~~~~~~~~~~~~~g~v~~--D~~g~----V~~~~EKp~~~~~~~~~v~~----~~ 291 (527)
|+.. ..-.-.|+-.+...+.++.+-+.+... ...-|++.. ..+|+ ++++.|.+..- +..+.+. ..
T Consensus 283 DN~L~~~Adp~flG~~~~~~~d~~~kvv~K~~--~E~vGvi~~~~~~dG~~l~~vVEYse~~~ll--~~a~~p~g~l~~~ 358 (615)
T PLN02830 283 TNGLVFKAIPAALGVSATKGFDMNSLAVPRKA--KEAIGAIAKLTHKDGREMVINVEYNQLDPLL--RATGHPDGDVNDE 358 (615)
T ss_pred cchhhhcccHHHhHHHHhcCCceEEEEEECCC--CcccceEEEEecCCCCeeeEEEeecccCHHH--HhccCCCcccccc
Confidence 9833 333378888899999998887766533 234554443 23343 33444543221 1111100 01
Q ss_pred cCCCccccccCCceeeeeEEEEeHHHHHHHHHh
Q 009720 292 LGFSPQEARKCPYVASMGVYVFKKDVLFKLLRW 324 (527)
Q Consensus 292 ~~~~~~~~~~~~~l~~~GIYif~~~iL~~ll~~ 324 (527)
-++ ..+-.|+..-.++-+.+.+++++
T Consensus 359 ~~~-------s~FPgNtN~L~v~L~a~~~~l~~ 384 (615)
T PLN02830 359 TGY-------SPFPGNINQLILKLGPYVKELAK 384 (615)
T ss_pred ccc-------ccCCCCceeeEeeHHHHHHHHHh
Confidence 111 12335888899998888877765
No 226
>KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton]
Probab=98.05 E-value=5.3e-06 Score=73.80 Aligned_cols=93 Identities=13% Similarity=0.191 Sum_probs=60.4
Q ss_pred eeEECCCCEEcceeEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCcEEeeeEEcCCCEEC
Q 009720 406 DAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIG 485 (527)
Q Consensus 406 ~s~I~~g~~I~~~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~iI~~~~~Ig 485 (527)
.++|.+||.|+ +.+.+.-||..|.|+++|.|...+-.=. +.-+-..--++++ +-|++.|++.-+.||..+.+|
T Consensus 39 KtIv~~g~iIR-GDLAnVr~GryCV~ksrsvIRPp~K~FS---Kg~affp~hiGdh---VFieE~cVVnAAqIgsyVh~G 111 (184)
T KOG3121|consen 39 KTIVEEGVIIR-GDLANVRIGRYCVLKSRSVIRPPMKIFS---KGPAFFPVHIGDH---VFIEEECVVNAAQIGSYVHLG 111 (184)
T ss_pred cEEEeeCcEEe-cccccceEcceEEeccccccCCchHHhc---CCceeeeeeecce---EEEecceEeehhhheeeeEec
Confidence 48899999998 5667888999999999999886531000 0000000001112 677777777777788888888
Q ss_pred CCcEEeCCCCcCCCccCCCc
Q 009720 486 KDVVIVNKDDVQEADRPELG 505 (527)
Q Consensus 486 ~~~~i~~~~~v~~~~~~~~~ 505 (527)
+|++|++...+.+.+++.++
T Consensus 112 knaviGrrCVlkdCc~ild~ 131 (184)
T KOG3121|consen 112 KNAVIGRRCVLKDCCRILDD 131 (184)
T ss_pred cceeEcCceEhhhheeccCC
Confidence 88888877666666555444
No 227
>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E. coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.
Probab=98.03 E-value=2.2e-05 Score=67.91 Aligned_cols=78 Identities=19% Similarity=0.390 Sum_probs=38.6
Q ss_pred eeEECCCCEEcceeEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCcEEe-eeEEcCCCEE
Q 009720 406 DAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR-NCIIDKNVKI 484 (527)
Q Consensus 406 ~s~I~~g~~I~~~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~-~~iI~~~~~I 484 (527)
++.|+++|+|... ....||++|.|+++|.|.... +++ .. ....+... |+.||+++.|. +|+|..+++|
T Consensus 9 ~~~I~~~~~i~~~--~~i~IG~~~~I~~~~~I~~~~---h~~-~~--~~~~~~~~---~v~Ig~~~~ig~~~~i~~g~~I 77 (107)
T cd05825 9 NSWIGEGVWIYNL--APVTIGSDACISQGAYLCTGS---HDY-RS--PAFPLITA---PIVIGDGAWVAAEAFVGPGVTI 77 (107)
T ss_pred CCEECCCCEEeeC--CceEECCCCEECCCeEeecCC---CCC-Cc--CccceecC---CEEECCCCEECCCCEECCCCEE
Confidence 4555555555421 246888888888888875321 111 00 00011111 25666655553 4555555555
Q ss_pred CCCcEEeCCC
Q 009720 485 GKDVVIVNKD 494 (527)
Q Consensus 485 g~~~~i~~~~ 494 (527)
|+++.|+...
T Consensus 78 g~~~~i~~gs 87 (107)
T cd05825 78 GEGAVVGARS 87 (107)
T ss_pred CCCCEECCCC
Confidence 5555554443
No 228
>PRK10502 putative acyl transferase; Provisional
Probab=98.03 E-value=1.9e-05 Score=75.06 Aligned_cols=33 Identities=21% Similarity=0.295 Sum_probs=21.4
Q ss_pred eEECCCCEEcc-eeE---eecEEcCCcEECCCCEEee
Q 009720 407 AIISHGCFLRE-CTV---EHSIVGERSRLDYGVELKD 439 (527)
Q Consensus 407 s~I~~g~~I~~-~~i---~~svIg~~~~I~~~~~I~~ 439 (527)
+.||++|.|.+ +.| .+..||++|.|+++|.|.+
T Consensus 52 a~iG~~~~I~~~a~i~~~~~~~IG~~~~Ig~~~~I~~ 88 (182)
T PRK10502 52 AKIGKGVVIRPSVRITYPWKLTIGDYAWIGDDVWLYN 88 (182)
T ss_pred cccCCCcEEcCCEEEecCCeEEECCCeEECCCceecc
Confidence 34444444442 233 2578999999999998874
No 229
>PRK10191 putative acyl transferase; Provisional
Probab=98.02 E-value=1.5e-05 Score=73.05 Aligned_cols=28 Identities=29% Similarity=0.539 Sum_probs=13.9
Q ss_pred eEeCCCcEEe-eeEEcCCCEECCCcEEeC
Q 009720 465 IGVGRNTKIR-NCIIDKNVKIGKDVVIVN 492 (527)
Q Consensus 465 ~~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~ 492 (527)
+.||.++.|. ++.||+++.||+++++..
T Consensus 99 ~~Ig~~~~I~~~v~IG~~~~Igags~V~~ 127 (146)
T PRK10191 99 VELGANVIILGDITIGNNVTVGAGSVVLD 127 (146)
T ss_pred cEEcCCCEEeCCCEECCCCEECCCCEECC
Confidence 4444444443 355555555555555543
No 230
>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]
Probab=98.00 E-value=1.6e-05 Score=75.03 Aligned_cols=82 Identities=26% Similarity=0.402 Sum_probs=49.1
Q ss_pred eeEECCCCEEcceeEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCcEE-eeeEEcCCCEE
Q 009720 406 DAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKI-RNCIIDKNVKI 484 (527)
Q Consensus 406 ~s~I~~g~~I~~~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I-~~~iI~~~~~I 484 (527)
.+.||.|.+|.-+ ...+||+-+.||++|.|..++-+|..-=+ ....+..++++ +.||.|++| .+-.||+|++|
T Consensus 73 ~A~IG~g~fIdHg--~GvVIgeta~IGddv~I~~gVTLGgtg~~-~g~RhPtIg~~---V~IGagAkILG~I~IGd~akI 146 (194)
T COG1045 73 GAKIGRGLFIDHG--TGVVIGETAVIGDDVTIYHGVTLGGTGKE-SGKRHPTIGNG---VYIGAGAKILGNIEIGDNAKI 146 (194)
T ss_pred CCeECCceEEcCC--ceEEEcceeEECCCeEEEcceEecCCCCc-CCCCCCccCCC---eEECCCCEEEcceEECCCCEE
Confidence 3444555555421 12455556666666666555555542100 11235566677 888888887 47788999999
Q ss_pred CCCcEEeCC
Q 009720 485 GKDVVIVNK 493 (527)
Q Consensus 485 g~~~~i~~~ 493 (527)
|+|+++...
T Consensus 147 GA~sVVlkd 155 (194)
T COG1045 147 GAGSVVLKD 155 (194)
T ss_pred CCCceEccC
Confidence 999888754
No 231
>PRK10191 putative acyl transferase; Provisional
Probab=97.96 E-value=5.7e-05 Score=69.24 Aligned_cols=32 Identities=25% Similarity=0.396 Sum_probs=17.8
Q ss_pred eEeCCCcEEe-eeEEcCCCEECCCcEEeCCCCc
Q 009720 465 IGVGRNTKIR-NCIIDKNVKIGKDVVIVNKDDV 496 (527)
Q Consensus 465 ~~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~~~~v 496 (527)
+.||+++.|. +|.|..+++||+++.|+.+..+
T Consensus 93 ~~IGd~~~Ig~~~~I~~~v~IG~~~~Igags~V 125 (146)
T PRK10191 93 PHIGNGVELGANVIILGDITIGNNVTVGAGSVV 125 (146)
T ss_pred CEECCCcEEcCCCEEeCCCEECCCCEECCCCEE
Confidence 4566655554 5555555555555555554433
No 232
>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional
Probab=97.96 E-value=3.7e-05 Score=73.73 Aligned_cols=55 Identities=16% Similarity=0.192 Sum_probs=32.1
Q ss_pred ccCCCeeeec-ee--e-eeeEECCCCEEcceeEeecEEcCCcEECCCCEEe--eeEEeCCc
Q 009720 392 RFLPPTKIDN-CR--I-KDAIISHGCFLRECTVEHSIVGERSRLDYGVELK--DTVMLGAD 446 (527)
Q Consensus 392 ~~~~p~~i~~-~~--i-~~s~I~~g~~I~~~~i~~svIg~~~~I~~~~~I~--~~~i~~~~ 446 (527)
.+.+|-.+.. .. + .++.|+.+|.+..-......||+++.|++++.|. ..+.+|++
T Consensus 31 ~i~~pf~~~~~~~I~iG~~v~i~~~~ri~~~~~~~i~IG~~v~Ig~~v~I~~~~~v~IG~~ 91 (192)
T PRK09677 31 IIRFPFYIRNDGSINFGEGFTSGVGLRLDAFGRGKLFFGDNVQVNDYVHIACIESITIGRD 91 (192)
T ss_pred EEcCCEEEcCCCeEEECCceEECCCeEEEecCCCeEEECCCCEECCCcEEccCceEEECCC
Confidence 4456666642 22 2 3566777776641111246788888888888876 34555554
No 233
>PRK10092 maltose O-acetyltransferase; Provisional
Probab=97.96 E-value=3.1e-05 Score=73.71 Aligned_cols=13 Identities=54% Similarity=0.649 Sum_probs=4.9
Q ss_pred EcCCCEECCCcEE
Q 009720 478 IDKNVKIGKDVVI 490 (527)
Q Consensus 478 I~~~~~Ig~~~~i 490 (527)
||+++.||.+|+|
T Consensus 132 IGd~v~IG~~a~I 144 (183)
T PRK10092 132 IGNNVWIGGRAVI 144 (183)
T ss_pred ECCCcEECCCCEE
Confidence 3333333333333
No 234
>COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]
Probab=97.95 E-value=1.6e-05 Score=78.41 Aligned_cols=12 Identities=33% Similarity=0.506 Sum_probs=6.2
Q ss_pred ccceEeCCCcEE
Q 009720 462 KVPIGVGRNTKI 473 (527)
Q Consensus 462 ~~~~~Ig~~~~I 473 (527)
.-|+.||+||.|
T Consensus 180 a~Pv~Igdncli 191 (271)
T COG2171 180 ANPVIIGDNCLI 191 (271)
T ss_pred CCCeEECCccEe
Confidence 345566664444
No 235
>PLN02357 serine acetyltransferase
Probab=97.92 E-value=4.7e-05 Score=78.94 Aligned_cols=54 Identities=11% Similarity=0.321 Sum_probs=38.7
Q ss_pred ecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCcEEeeeEEcCCCEECCCcEEeCC
Q 009720 422 HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNK 493 (527)
Q Consensus 422 ~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~ 493 (527)
+++||++|.||.|+.|.+.+.+|++ +.||.+++|...+-...+.+|.-+++.+.
T Consensus 278 ~piIGd~V~IGagA~IlggV~IGdg------------------a~IGAgSVV~~dVP~~~~v~G~PArvv~~ 331 (360)
T PLN02357 278 HPKIGDGVLIGAGTCILGNITIGEG------------------AKIGAGSVVLKDVPPRTTAVGNPARLIGG 331 (360)
T ss_pred CceeCCCeEECCceEEECCeEECCC------------------CEECCCCEECcccCCCcEEECCCeEEEcc
Confidence 5778888888888887766666665 77888887776666666666766666654
No 236
>PLN02694 serine O-acetyltransferase
Probab=97.89 E-value=5.2e-05 Score=76.54 Aligned_cols=14 Identities=7% Similarity=0.022 Sum_probs=7.3
Q ss_pred ecCCHHHHHHHHHH
Q 009720 226 YRMDYMDFIQSHVD 239 (527)
Q Consensus 226 ~~~dl~~ll~~h~~ 239 (527)
...+|.+.|.++..
T Consensus 56 ~~~~~~~al~~~l~ 69 (294)
T PLN02694 56 SHSSLERSLSFHLG 69 (294)
T ss_pred CCcCHHHHHHHHHH
Confidence 34456666655543
No 237
>TIGR01172 cysE serine O-acetyltransferase. Cysteine biosynthesis
Probab=97.84 E-value=8.1e-05 Score=69.46 Aligned_cols=28 Identities=29% Similarity=0.546 Sum_probs=17.0
Q ss_pred eEeCCCcEEe-eeEEcCCCEECCCcEEeC
Q 009720 465 IGVGRNTKIR-NCIIDKNVKIGKDVVIVN 492 (527)
Q Consensus 465 ~~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~ 492 (527)
+.||.+++|. ++.||+++.||+++.+..
T Consensus 120 v~Ig~~a~I~~~v~IG~~~~Iga~s~V~~ 148 (162)
T TIGR01172 120 VMIGAGAKVLGNIEVGENAKIGANSVVLK 148 (162)
T ss_pred cEEcCCCEEECCcEECCCCEECCCCEECC
Confidence 5666666654 356666666666666654
No 238
>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. Alternate name: tetrahydrodipicolinate N-succinyltransferase.
Probab=97.83 E-value=8.9e-05 Score=74.71 Aligned_cols=6 Identities=33% Similarity=0.706 Sum_probs=2.2
Q ss_pred ceEeCC
Q 009720 464 PIGVGR 469 (527)
Q Consensus 464 ~~~Ig~ 469 (527)
|+.||+
T Consensus 225 pV~IGe 230 (319)
T TIGR03535 225 VISIGE 230 (319)
T ss_pred cEEECC
Confidence 333333
No 239
>PLN02739 serine acetyltransferase
Probab=97.82 E-value=8.3e-05 Score=76.59 Aligned_cols=78 Identities=22% Similarity=0.281 Sum_probs=34.1
Q ss_pred eEECCCCEEcceeEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCcEEe-eeEEcCCCEEC
Q 009720 407 AIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR-NCIIDKNVKIG 485 (527)
Q Consensus 407 s~I~~g~~I~~~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~-~~iI~~~~~Ig 485 (527)
+.||+|++|... ..++||.+|+||++|.|...+.+|+... ..|+..+.||+++.|. ++.|-.|++||
T Consensus 212 A~IG~Gv~IdHg--~GVVIG~~avIGdnv~I~~gVTIGg~g~----------~~g~r~p~IGd~V~IGagA~IlG~V~IG 279 (355)
T PLN02739 212 ARIGKGILLDHG--TGVVIGETAVIGDRVSILHGVTLGGTGK----------ETGDRHPKIGDGALLGACVTILGNISIG 279 (355)
T ss_pred ccccCceEEecC--CceEECCCCEECCCCEEcCCceeCCcCC----------cCCCCCcEECCCCEEcCCCEEeCCeEEC
Confidence 444555555421 1245555555555555544444443100 0011114555555553 44444455555
Q ss_pred CCcEEeCCCCc
Q 009720 486 KDVVIVNKDDV 496 (527)
Q Consensus 486 ~~~~i~~~~~v 496 (527)
++++|+.+..|
T Consensus 280 d~aiIGAGSVV 290 (355)
T PLN02739 280 AGAMVAAGSLV 290 (355)
T ss_pred CCCEECCCCEE
Confidence 55555444433
No 240
>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.
Probab=97.81 E-value=7.8e-05 Score=68.28 Aligned_cols=19 Identities=16% Similarity=0.204 Sum_probs=15.7
Q ss_pred ecEEcCCcEECCCCEEeee
Q 009720 422 HSIVGERSRLDYGVELKDT 440 (527)
Q Consensus 422 ~svIg~~~~I~~~~~I~~~ 440 (527)
.+.||++|.|++++.|...
T Consensus 21 ~i~IG~~~~I~~~v~i~~~ 39 (145)
T cd03349 21 KLSIGKFCSIAPGVKIGLG 39 (145)
T ss_pred CeEECCCCEECCCCEECCC
Confidence 5788999999988888665
No 241
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=97.81 E-value=1.2e-05 Score=81.10 Aligned_cols=93 Identities=18% Similarity=0.177 Sum_probs=70.1
Q ss_pred eee-eeeEECCCCEEcceeEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCcEEeeeEEcC
Q 009720 402 CRI-KDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDK 480 (527)
Q Consensus 402 ~~i-~~s~I~~g~~I~~~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~iI~~ 480 (527)
.+| .+.++.+-..+| ++|.||+++.||++|+|.+.+.+.+ +.+-.+ ..++.++-|+.|++|+
T Consensus 259 ~~i~~nvlvd~~~~iG----~~C~Ig~~vvIG~r~~i~~gV~l~~----------s~il~~---~~~~~~s~i~s~ivg~ 321 (371)
T KOG1322|consen 259 SKIVGNVLVDSIASIG----ENCSIGPNVVIGPRVRIEDGVRLQD----------STILGA---DYYETHSEISSSIVGW 321 (371)
T ss_pred ccccccEeeccccccC----CccEECCCceECCCcEecCceEEEe----------eEEEcc---ceechhHHHHhhhccc
Confidence 444 444555555555 5689999999999999999998887 344444 4677777788999999
Q ss_pred CCEECCCcEEeCCCCcCCCccCCCceEEecC
Q 009720 481 NVKIGKDVVIVNKDDVQEADRPELGFYIRSG 511 (527)
Q Consensus 481 ~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g 511 (527)
|+.||.|++|.+...++++..+.+.-|+.+|
T Consensus 322 ~~~IG~~~~id~~a~lG~nV~V~d~~~vn~g 352 (371)
T KOG1322|consen 322 NVPIGIWARIDKNAVLGKNVIVADEDYVNEG 352 (371)
T ss_pred cccccCceEEecccEeccceEEecccccccc
Confidence 9999999999888777777666666666665
No 242
>PRK00576 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=97.81 E-value=0.00054 Score=64.57 Aligned_cols=96 Identities=13% Similarity=0.125 Sum_probs=61.3
Q ss_pred CCccceeeCC--cchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCcccCCCeEEEeccccCCCCCCCCcc
Q 009720 115 AATPAVPVAG--CYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWF 192 (527)
Q Consensus 115 ~PKpLlpIgG--k~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~~V~vl~~~q~~~~~~~~~~ 192 (527)
.+|+|++++| + |||+|+++.+. ..+++|+|+++.. +. |. ..+ +.++.. ... .
T Consensus 3 ~dK~ll~~~g~~~-~ll~~~~~~l~-~~~~~iivv~~~~-~~--------~~----~~~---~~~i~d-~~~-------g 56 (178)
T PRK00576 3 RDKATLPLPGGTT-TLVEHVVGIVG-QRCAPVFVMAAPG-QP--------LP----ELP---APVLRD-ELR-------G 56 (178)
T ss_pred CCCEeeEeCCCCc-CHHHHHHHHHh-hcCCEEEEECCCC-cc--------cc----cCC---CCEecc-CCC-------C
Confidence 5899999999 9 99999999765 5689999999763 21 10 011 334432 221 1
Q ss_pred cChHHHHHHHHHHHHhhhcCCCCeEEEEcCceee-cCC-HHHHHHHHHH
Q 009720 193 QGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY-RMD-YMDFIQSHVD 239 (527)
Q Consensus 193 ~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~-~~d-l~~ll~~h~~ 239 (527)
+|...++..++..... ...+.++++.||+-+ ..+ +..+++.+..
T Consensus 57 ~gpl~~~~~gl~~~~~---~~~~~~lv~~~DmP~i~~~~i~~L~~~~~~ 102 (178)
T PRK00576 57 LGPLPATGRGLRAAAE---AGARLAFVCAVDMPYLTVELIDDLARPAAQ 102 (178)
T ss_pred CCcHHHHHHHHHHHHh---cCCCEEEEEeCCCCCCCHHHHHHHHHHhhc
Confidence 4666666655544321 235789999999944 444 5666665433
No 243
>PRK11132 cysE serine acetyltransferase; Provisional
Probab=97.79 E-value=0.00011 Score=74.07 Aligned_cols=28 Identities=29% Similarity=0.508 Sum_probs=17.5
Q ss_pred eEeCCCcEEe-eeEEcCCCEECCCcEEeC
Q 009720 465 IGVGRNTKIR-NCIIDKNVKIGKDVVIVN 492 (527)
Q Consensus 465 ~~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~ 492 (527)
|.||.|++|. ++.||+|+.||+++++..
T Consensus 200 V~IGaga~Ilggv~IG~~a~IGAgSvV~~ 228 (273)
T PRK11132 200 VMIGAGAKILGNIEVGRGAKIGAGSVVLQ 228 (273)
T ss_pred cEEcCCCEEcCCCEECCCCEECCCCEECc
Confidence 6666666663 566666666666666654
No 244
>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E. coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.
Probab=97.79 E-value=0.00023 Score=61.47 Aligned_cols=17 Identities=6% Similarity=0.171 Sum_probs=8.0
Q ss_pred eEEcCCCEECCCcEEeC
Q 009720 476 CIIDKNVKIGKDVVIVN 492 (527)
Q Consensus 476 ~iI~~~~~Ig~~~~i~~ 492 (527)
++|++++.||.++.|..
T Consensus 57 v~Ig~~~~ig~~~~i~~ 73 (107)
T cd05825 57 IVIGDGAWVAAEAFVGP 73 (107)
T ss_pred EEECCCCEECCCCEECC
Confidence 44444444444444443
No 245
>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine. This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.
Probab=97.69 E-value=0.00021 Score=60.98 Aligned_cols=64 Identities=19% Similarity=0.287 Sum_probs=40.9
Q ss_pred eeEECCCCEEcceeEeecEEcCCcEECCCCE---EeeeEEeCCcccCchhhHHhhhcCCccceEeCCCcEEee-eEEcCC
Q 009720 406 DAIISHGCFLRECTVEHSIVGERSRLDYGVE---LKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRN-CIIDKN 481 (527)
Q Consensus 406 ~s~I~~g~~I~~~~i~~svIg~~~~I~~~~~---I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~-~iI~~~ 481 (527)
.++|++++.|++ ++.|+.+++|+.++. ++++++..+ +.|+.++.+.. +.|+++
T Consensus 22 ~~~ig~~~~Ig~----~~~i~~~~~i~~~~~~~~~~~~~Ig~~-------------------~~Ig~~~~i~~~~~Ig~~ 78 (101)
T cd03354 22 GIVIGETAVIGD----NCTIYQGVTLGGKGKGGGKRHPTIGDN-------------------VVIGAGAKILGNITIGDN 78 (101)
T ss_pred eEEECCCCEECC----CCEEcCCCEECCCccCCcCCCCEECCC-------------------cEEcCCCEEECcCEECCC
Confidence 356666666663 355667777776665 334333333 77777777764 777777
Q ss_pred CEECCCcEEeC
Q 009720 482 VKIGKDVVIVN 492 (527)
Q Consensus 482 ~~Ig~~~~i~~ 492 (527)
+.|++++.|.+
T Consensus 79 ~~i~~~~~i~~ 89 (101)
T cd03354 79 VKIGANAVVTK 89 (101)
T ss_pred CEECCCCEECc
Confidence 77777777765
No 246
>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]
Probab=97.66 E-value=0.00019 Score=67.90 Aligned_cols=88 Identities=14% Similarity=0.255 Sum_probs=47.3
Q ss_pred CCCCCCccCCCeeee-c--eee-eeeEECCCCEEcce-eE---------eecEEcCCcEECCCCEEeeeEEeCCcccCch
Q 009720 386 PFYTSPRFLPPTKID-N--CRI-KDAIISHGCFLREC-TV---------EHSIVGERSRLDYGVELKDTVMLGADYYQTE 451 (527)
Q Consensus 386 ~i~~~~~~~~p~~i~-~--~~i-~~s~I~~g~~I~~~-~i---------~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~ 451 (527)
.|++.+.+.+...|+ . ..| ..++||++|.|..+ ++ .|=.||+++.||.|+.|=..+-.|++
T Consensus 69 eIhp~A~IG~g~fIdHg~GvVIgeta~IGddv~I~~gVTLGgtg~~~g~RhPtIg~~V~IGagAkILG~I~IGd~----- 143 (194)
T COG1045 69 EIHPGAKIGRGLFIDHGTGVVIGETAVIGDDVTIYHGVTLGGTGKESGKRHPTIGNGVYIGAGAKILGNIEIGDN----- 143 (194)
T ss_pred eeCCCCeECCceEEcCCceEEEcceeEECCCeEEEcceEecCCCCcCCCCCCccCCCeEECCCCEEEcceEECCC-----
Confidence 455555566655553 1 222 23444444444411 11 34578888888888887666666655
Q ss_pred hhHHhhhcCCccceEeCCCcEEeeeEEcCCCEECCCcEEe
Q 009720 452 SEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIV 491 (527)
Q Consensus 452 ~~~~~~~~~~~~~~~Ig~~~~I~~~iI~~~~~Ig~~~~i~ 491 (527)
+.||.|+++...+=..-+.+|-=+++.
T Consensus 144 -------------akIGA~sVVlkdVP~~~tvvGvPArii 170 (194)
T COG1045 144 -------------AKIGAGSVVLKDVPPNATVVGVPARVI 170 (194)
T ss_pred -------------CEECCCceEccCCCCCceEecCcceEe
Confidence 666666666544333333334444443
No 247
>COG1861 SpsF Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane]
Probab=97.65 E-value=0.00063 Score=65.53 Aligned_cols=116 Identities=21% Similarity=0.350 Sum_probs=78.6
Q ss_pred ceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHcC-CCEEEEEeccCch--hHHHHHHHhhccCCccc
Q 009720 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSG-INKIFVLTQFNSA--SLNRHIARTYFGNGTNF 170 (527)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~G-i~~I~Iv~~~~~~--~i~~hl~~~y~~~~~~~ 170 (527)
++.+||-|-=.+||| .-|.|+|+++. |||+++|+++..+. +++|+|.|....+ .+..+.. . .
T Consensus 3 ~I~~IiQARmgStRL------pgKvLlpL~~~-pmI~~~lervrks~~~d~ivvATS~~~~d~~l~~~~~-~-------~ 67 (241)
T COG1861 3 MILVIIQARMGSTRL------PGKVLLPLGGE-PMIEYQLERVRKSKDLDKIVVATSDKEEDDALEEVCR-S-------H 67 (241)
T ss_pred cEEEEeeecccCccC------CcchhhhcCCC-chHHHHHHHHhccccccceEEEecCCcchhHHHHHHH-H-------c
Confidence 344444454455677 45999999999 99999999999984 7999999986543 2333332 1 1
Q ss_pred CCCeEEEeccccCCCCCCCCcccChH-HHHHHHHHHHHhhhcCCCCeEEEEcCce-eecCC-HHHHHHHHHHcCCcE
Q 009720 171 GDGFVEVLAATQTPGESGKNWFQGTA-DAVRQFTWVFEDAKNRNIENVAILCGDH-LYRMD-YMDFIQSHVDRDADI 244 (527)
Q Consensus 171 ~~~~V~vl~~~q~~~~~~~~~~~Gta-~al~~a~~~l~~~~~~~~e~~Lvl~gD~-l~~~d-l~~ll~~h~~~~ad~ 244 (527)
| +.+. +|.. +.|..+...++. -..+.++=+.||. +.+.. +...++.|.++++|.
T Consensus 68 G---~~vf--------------rGs~~dVL~Rf~~a~~a---~~~~~VVRvTGD~P~~dp~l~d~~v~~~l~~gaDY 124 (241)
T COG1861 68 G---FYVF--------------RGSEEDVLQRFIIAIKA---YSADVVVRVTGDNPFLDPELVDAAVDRHLEKGADY 124 (241)
T ss_pred C---eeEe--------------cCCHHHHHHHHHHHHHh---cCCCeEEEeeCCCCCCCHHHHHHHHHHHHhcCCcc
Confidence 2 3332 2444 566666655553 2456888899999 44555 488899999988874
No 248
>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.
Probab=97.59 E-value=0.00022 Score=61.07 Aligned_cols=35 Identities=9% Similarity=0.141 Sum_probs=22.6
Q ss_pred eEECCCCEEcceeEeecEEcC--CcEECCCCEEeeeEEeCC
Q 009720 407 AIISHGCFLRECTVEHSIVGE--RSRLDYGVELKDTVMLGA 445 (527)
Q Consensus 407 s~I~~g~~I~~~~i~~svIg~--~~~I~~~~~I~~~~i~~~ 445 (527)
..||++|+|++. +.|.. ++.||++|.|.+.+.+.+
T Consensus 2 v~Ig~~~~I~~~----~~i~~~~~v~IG~~~~Ig~~~~i~~ 38 (109)
T cd04647 2 ISIGDNVYIGPG----CVISAGGGITIGDNVLIGPNVTIYD 38 (109)
T ss_pred eEECCCcEECCC----CEEecCCceEECCCCEECCCCEEEC
Confidence 457777777743 44554 777888887766554443
No 249
>KOG2638 consensus UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=97.51 E-value=0.0088 Score=62.46 Aligned_cols=356 Identities=17% Similarity=0.226 Sum_probs=177.6
Q ss_pred CCceEEEEEeCCCCCccccCccCCCccceeeCCcchhHHHHHHHHHHc----CCC-EEEEEeccCchhHHHHHHHhhccC
Q 009720 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINS----GIN-KIFVLTQFNSASLNRHIARTYFGN 166 (527)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~~----Gi~-~I~Iv~~~~~~~i~~hl~~~y~~~ 166 (527)
-+++..+=|-||.||-|+ -.-||.+++|-+-+..+|-++.+..+. +++ -.++...++.++--+.+.+.|.+.
T Consensus 101 L~KLavlKLNGGlGttmG---c~gPKS~ieVR~g~tFLDL~V~QIe~LN~~Y~~dVPlvLMNSfnTdedT~kil~ky~~~ 177 (498)
T KOG2638|consen 101 LNKLAVLKLNGGLGTTMG---CKGPKSVIEVRDGLTFLDLTVRQIENLNKTYNVDVPLVLMNSFNTDEDTQKILKKYAGS 177 (498)
T ss_pred hhheEEEEecCCcCCccc---cCCCceeEEEcCCCchhHHHHHHHHHHHhhcCCCCCEEEecccccchHHHHHHHHhcCC
Confidence 466778889999999997 468999999976658888777766554 343 356666777665555555677443
Q ss_pred Cc--------ccCCCeE-EEecccc-CCCCCCCCcc-cChHHHHHHH--HHHHHhhhcCCCCeEEEEcCceee-cCCHHH
Q 009720 167 GT--------NFGDGFV-EVLAATQ-TPGESGKNWF-QGTADAVRQF--TWVFEDAKNRNIENVAILCGDHLY-RMDYMD 232 (527)
Q Consensus 167 ~~--------~~~~~~V-~vl~~~q-~~~~~~~~~~-~Gta~al~~a--~~~l~~~~~~~~e~~Lvl~gD~l~-~~dl~~ 232 (527)
.. +|.+-.. +.++... ....+.+.|| -|.++-.... ...++.+...+.|.++|-+.|.+- ..|+ .
T Consensus 178 kv~i~TF~QS~~PRi~~etlLPv~~~~~d~~~d~WYPPGHGd~f~sl~nSG~Ld~llaqGkEylFVSNiDNLGAtvDL-~ 256 (498)
T KOG2638|consen 178 KVDIKTFNQSKYPRIDKETLLPVPKLEADSDNEAWYPPGHGDLFDSLHNSGLLDKLLAQGKEYLFVSNIDNLGATVDL-N 256 (498)
T ss_pred ceeEEEeccccCCccccccccCCCcccCCCCcccccCCCCccHHHHHhccchHHHHHhCCceEEEEeccccccceeeH-H
Confidence 32 2221111 2233222 1111235677 4666543322 233454445678999999999987 3564 3
Q ss_pred HHHHHHHcCCcEEEEEEEcCCCCCCCce-EEEECCCCceEEEEecCCccccccccccccccCCCccccccCCceeeeeEE
Q 009720 233 FIQSHVDRDADITISCAAVGESRASDYG-LVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVY 311 (527)
Q Consensus 233 ll~~h~~~~ad~tv~~~~~~~~~~~~~g-~v~~D~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~GIY 311 (527)
+++...+.+.+..|=+.+..... .+-| ++..+..-|+.++..-|.....+=+.+ +.-.+.++.--
T Consensus 257 ILn~~i~~~~ey~MEvTdKT~aD-vKgGtLi~y~G~lrlLEiaQVP~ehv~eFkS~-------------kkFkifNTNNl 322 (498)
T KOG2638|consen 257 ILNHVINNNIEYLMEVTDKTRAD-VKGGTLIQYEGKLRLLEIAQVPKEHVDEFKSI-------------KKFKIFNTNNL 322 (498)
T ss_pred HHHHHhcCCCceEEEecccchhh-cccceEEeecCEEEEEEeccCChhHhhhhccc-------------eeEEEeccCCe
Confidence 45555666777776665433211 1233 344443334555555554321110000 00123444444
Q ss_pred EEeHHHHHHHHHhhCCCC--------Cchhhhh------HHhhhhc-CceEEEEe-cceEEecCCHHHHHHHHHHhhccC
Q 009720 312 VFKKDVLFKLLRWRYPTS--------NDFGSEI------IPAAIME-HDVQAYIF-RDYWEDIGTIKSFYEANMALTKES 375 (527)
Q Consensus 312 if~~~iL~~ll~~~~~~~--------~d~~~di------i~~li~~-~~V~~~~~-~g~w~dIgt~~d~~~An~~ll~~~ 375 (527)
-++-..+++++++..-.+ -+...++ +-.+++. .+-.+..+ +.-+.-+.|-.|++-..-.+..-.
T Consensus 323 WinLkavKrlve~~~l~meIi~N~kti~~~~~viQleTa~GaaIk~F~na~gv~VpRsRFlPVKt~sDLlLv~S~Ly~ld 402 (498)
T KOG2638|consen 323 WINLKAVKKLVEENALNMEIIVNPKTIDRGIEVIQLETAAGAAIKFFDNAIGVNVPRSRFLPVKTCSDLLLVMSNLYDLD 402 (498)
T ss_pred EEehHHHHHHhhcCcccceeecChhhccCCceEEEEhhhhhHHHHhCCCceeeeccccccccccccccceeeecceeecc
Confidence 445556666666532110 0001111 1122222 11112221 122444455555544333332111
Q ss_pred -CCCccCCCCCCCCCCCccCCCeeeec--eeeee--eEECCCCEEcceeEeecEEcCCcEECCCCEEeeeEEeCCcccCc
Q 009720 376 -PAFHFYDPKTPFYTSPRFLPPTKIDN--CRIKD--AIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQT 450 (527)
Q Consensus 376 -~~~~~~~~~~~i~~~~~~~~p~~i~~--~~i~~--s~I~~g~~I~~~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~ 450 (527)
..+.. +|.....+.|.+ +++. .+|.+ +.+-+==.| -.+.|-.|--++..|.++.++++++.-++
T Consensus 403 ~Gsl~l-~~~r~~~t~P~v----kLg~~F~kv~~f~~rfp~iP~i--leLdhLtVsGdV~FGknV~LkGtViIia~---- 471 (498)
T KOG2638|consen 403 NGSLTL-SPSRFGPTPPLV----KLGSEFKKVEDFLGRFPGIPDI--LELDHLTVSGDVWFGKNVSLKGTVIIIAN---- 471 (498)
T ss_pred CCeEEe-chhhcCCCCCee----ecchhhhHHHHHHhcCCCCCcc--ceeceEEEeccEEeccceEEeeEEEEEec----
Confidence 01110 111111111111 1111 11100 000000001 12245667778999999999999887653
Q ss_pred hhhHHhhhcCCccceEeCCCcEEeeeEEcCCCEECC
Q 009720 451 ESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGK 486 (527)
Q Consensus 451 ~~~~~~~~~~~~~~~~Ig~~~~I~~~iI~~~~~Ig~ 486 (527)
+| -++.|.+|++++||+|-.|.+|-+
T Consensus 472 ---------~~-~~i~IP~gsVLEn~~v~gn~~ile 497 (498)
T KOG2638|consen 472 ---------EG-DRIDIPDGSVLENKIVSGNLRILE 497 (498)
T ss_pred ---------CC-CeeecCCCCeeecceEeccccccc
Confidence 22 237899999999999998888754
No 250
>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function. This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size.
Probab=97.44 E-value=0.00038 Score=79.35 Aligned_cols=75 Identities=16% Similarity=0.349 Sum_probs=42.0
Q ss_pred eeEECCCCEEcceeE-e--ecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCcEEe-eeEEcCC
Q 009720 406 DAIISHGCFLRECTV-E--HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR-NCIIDKN 481 (527)
Q Consensus 406 ~s~I~~g~~I~~~~i-~--~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~-~~iI~~~ 481 (527)
++.||++|+|+...+ + .+.||++|.|+++|.|+.... .++.+. .++ +.||++|.|. +|+|..+
T Consensus 597 Ga~IG~~v~i~~~~~~~~dlv~IGd~~~I~~~~~i~~h~~-~~~~~~---------~~~---v~IG~~~~IG~~a~V~~g 663 (695)
T TIGR02353 597 GVKIGRGVYIDGTDLTERDLVTIGDDSTLNEGSVIQTHLF-EDRVMK---------SDT---VTIGDGATLGPGAIVLYG 663 (695)
T ss_pred CCEECCCeEECCeeccCCCCeEECCCCEECCCCEEEeccc-cccccc---------cCC---eEECCCCEECCCCEECCC
Confidence 566777777764322 2 268999999999999876432 221110 011 5666655553 4555555
Q ss_pred CEECCCcEEeCC
Q 009720 482 VKIGKDVVIVNK 493 (527)
Q Consensus 482 ~~Ig~~~~i~~~ 493 (527)
++||+++.|+..
T Consensus 664 ~~IGd~a~Ig~~ 675 (695)
T TIGR02353 664 VVMGEGSVLGPD 675 (695)
T ss_pred CEECCCCEECCC
Confidence 555555555443
No 251
>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function. This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size.
Probab=97.42 E-value=0.00043 Score=78.92 Aligned_cols=80 Identities=20% Similarity=0.255 Sum_probs=47.9
Q ss_pred eeEECCCCEEcceeE---eecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCcEEe-eeEEcCC
Q 009720 406 DAIISHGCFLRECTV---EHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR-NCIIDKN 481 (527)
Q Consensus 406 ~s~I~~g~~I~~~~i---~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~-~~iI~~~ 481 (527)
.+.||+||+|+...+ ....||++|.|+++|.|.+..+.+. .+. -| |+.||+||.|. +|+|.++
T Consensus 112 Ga~IG~~v~I~~~~~~~~~li~IG~~~~I~~~v~l~~~~~~~~----------~l~-~g--~i~IG~~~~IG~~s~I~~g 178 (695)
T TIGR02353 112 GAKIGKGVDIGSLPPVCTDLLTIGAGTIVRKEVMLLGYRAERG----------RLH-TG--PVTLGRDAFIGTRSTLDID 178 (695)
T ss_pred CCEECCCCEEEeeecccCCceEECCCCEECCCCEEEcccCCCC----------cee-ec--CcEECCCcEECCCCEEcCC
Confidence 466777777765322 3456888888888888765432211 011 11 26777777773 6777677
Q ss_pred CEECCCcEEeCCCCcCC
Q 009720 482 VKIGKDVVIVNKDDVQE 498 (527)
Q Consensus 482 ~~Ig~~~~i~~~~~v~~ 498 (527)
++||++++|+....+..
T Consensus 179 ~~Igd~a~vgagS~V~~ 195 (695)
T TIGR02353 179 TSIGDGAQLGHGSALQG 195 (695)
T ss_pred CEECCCCEECCCCEecC
Confidence 77777777766554444
No 252
>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]
Probab=97.29 E-value=0.00063 Score=64.53 Aligned_cols=82 Identities=22% Similarity=0.325 Sum_probs=41.4
Q ss_pred eeEECCCCEEc-ceeE---eecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhh-cCCccceEeCCCcEEe-eeEEc
Q 009720 406 DAIISHGCFLR-ECTV---EHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLL-AEGKVPIGVGRNTKIR-NCIID 479 (527)
Q Consensus 406 ~s~I~~g~~I~-~~~i---~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~Ig~~~~I~-~~iI~ 479 (527)
+..||..|++. .+.+ .+..||+++.++++|.|...-.... .+..... ....-|+.||+++.|. +++|-
T Consensus 67 ~~~iG~~~~i~~~~~~~~~~~i~ig~~~~i~~~v~i~~~~h~~~------~~~~~~~~~~~~~~v~IG~~vwIG~~a~Il 140 (190)
T COG0110 67 NLTIGDLCFIGVNVVILVGEGITIGDNVVVGPNVTIYTNSHPGD------FVTANIGALVGAGPVTIGEDVWIGAGAVIL 140 (190)
T ss_pred ceEECCeeEEcCCcEEEecCCeEECCCceECCCcEEecCCCCCC------hhhcccCCceecCCeEECCCeEEcCccEEC
Confidence 45566666666 2332 3456788888888877765411111 0000000 2223346666655553 55555
Q ss_pred CCCEECCCcEEeCC
Q 009720 480 KNVKIGKDVVIVNK 493 (527)
Q Consensus 480 ~~~~Ig~~~~i~~~ 493 (527)
++++||.+++|+..
T Consensus 141 pGV~IG~gavigag 154 (190)
T COG0110 141 PGVTIGEGAVIGAG 154 (190)
T ss_pred CCEEECCCcEEeeC
Confidence 55555555555544
No 253
>COG4801 Predicted acyltransferase [General function prediction only]
Probab=97.23 E-value=0.00097 Score=64.37 Aligned_cols=81 Identities=25% Similarity=0.354 Sum_probs=50.2
Q ss_pred cCCCeeeeceee---eeeEECCCCEEcceeEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCC
Q 009720 393 FLPPTKIDNCRI---KDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGR 469 (527)
Q Consensus 393 ~~~p~~i~~~~i---~~s~I~~g~~I~~~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~ 469 (527)
+.|+|.++...| .+.+||.++.+. ..++|....+|+++.|...+.-++ +.|+.
T Consensus 6 vPp~Tr~e~~~ivv~gdViIG~nS~l~-----~~V~g~~iivge~v~i~Gdiva~d-------------------iridm 61 (277)
T COG4801 6 VPPNTRVEEAIIVVKGDVIIGKNSMLK-----YGVVGEEIIVGERVRIYGDIVAKD-------------------IRIDM 61 (277)
T ss_pred cCCCCceeeeeEEEeccEEEcccceee-----eeeeeeeEEeccCcEEeeeEEecc-------------------eeeee
Confidence 345555544333 355666655554 457777777777777777666644 77777
Q ss_pred CcEEe-eeEEcCCCEECCCcEEeCCCCcC
Q 009720 470 NTKIR-NCIIDKNVKIGKDVVIVNKDDVQ 497 (527)
Q Consensus 470 ~~~I~-~~iI~~~~~Ig~~~~i~~~~~v~ 497 (527)
.|++. |.++++++.||+++.|.+.-.+.
T Consensus 62 w~kv~gNV~ve~dayiGE~~sI~gkl~v~ 90 (277)
T COG4801 62 WCKVTGNVIVENDAYIGEFSSIKGKLTVI 90 (277)
T ss_pred eeEeeccEEEcCceEEeccceeeeeEEEe
Confidence 77774 66777777777777776654433
No 254
>KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism]
Probab=97.13 E-value=0.00068 Score=65.15 Aligned_cols=17 Identities=41% Similarity=0.556 Sum_probs=9.4
Q ss_pred EEcCCCEECCCcEEeCC
Q 009720 477 IIDKNVKIGKDVVIVNK 493 (527)
Q Consensus 477 iI~~~~~Ig~~~~i~~~ 493 (527)
.||+|+-||.+++|.++
T Consensus 202 ~Igd~vliGaGvtILgn 218 (269)
T KOG4750|consen 202 KIGDNVLIGAGVTILGN 218 (269)
T ss_pred cccCCeEEccccEEeCC
Confidence 45555555555555554
No 255
>COG4801 Predicted acyltransferase [General function prediction only]
Probab=97.12 E-value=0.0027 Score=61.36 Aligned_cols=74 Identities=20% Similarity=0.346 Sum_probs=57.6
Q ss_pred eeeeeeEECCCCEEcc-eeEeecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCcEEe-eeEEc
Q 009720 402 CRIKDAIISHGCFLRE-CTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR-NCIID 479 (527)
Q Consensus 402 ~~i~~s~I~~g~~I~~-~~i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~-~~iI~ 479 (527)
+.++-.++++...+++ ..|...+++.+++|+.||.+..+++.+.+ .+||+.+.|. .-++.
T Consensus 29 S~l~~~V~g~~iivge~v~i~Gdiva~diridmw~kv~gNV~ve~d------------------ayiGE~~sI~gkl~v~ 90 (277)
T COG4801 29 SMLKYGVVGEEIIVGERVRIYGDIVAKDIRIDMWCKVTGNVIVEND------------------AYIGEFSSIKGKLTVI 90 (277)
T ss_pred ceeeeeeeeeeEEeccCcEEeeeEEecceeeeeeeEeeccEEEcCc------------------eEEeccceeeeeEEEe
Confidence 4455556666666664 56667788899999999999999888887 8888888886 56677
Q ss_pred CCCEECCCcEEeCC
Q 009720 480 KNVKIGKDVVIVNK 493 (527)
Q Consensus 480 ~~~~Ig~~~~i~~~ 493 (527)
.+-.||++|.|.++
T Consensus 91 gdLdig~dV~Iegg 104 (277)
T COG4801 91 GDLDIGADVIIEGG 104 (277)
T ss_pred cccccccceEEecC
Confidence 77888888888765
No 256
>KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=96.83 E-value=0.0014 Score=59.17 Aligned_cols=50 Identities=16% Similarity=0.342 Sum_probs=35.0
Q ss_pred CccCCCeee-eceee-eeeEECCCCEEcc-eeEe----ecEEcCCcEECCCCEEeee
Q 009720 391 PRFLPPTKI-DNCRI-KDAIISHGCFLRE-CTVE----HSIVGERSRLDYGVELKDT 440 (527)
Q Consensus 391 ~~~~~p~~i-~~~~i-~~s~I~~g~~I~~-~~i~----~svIg~~~~I~~~~~I~~~ 440 (527)
..+.|.+.+ .++.| .|.+|++||+|++ +.+. --+||+++.|++-+.|.+.
T Consensus 9 vkIap~AvVCvEs~irGdvti~~gcVvHP~a~~iA~aGPI~iGEnniiEEyA~i~n~ 65 (190)
T KOG4042|consen 9 VKIAPSAVVCVESDIRGDVTIKEGCVVHPFAVFIATAGPIYIGENNIIEEYAVIRNR 65 (190)
T ss_pred eeecCceEEEEecccccceEecCCcEecceEEEEcccCCEEEccCchhhhHHHHHhh
Confidence 345555555 34555 5799999999996 3331 2578999999988888764
No 257
>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.
Probab=96.80 E-value=0.0059 Score=55.91 Aligned_cols=9 Identities=22% Similarity=0.420 Sum_probs=3.8
Q ss_pred eEeCCCcEE
Q 009720 465 IGVGRNTKI 473 (527)
Q Consensus 465 ~~Ig~~~~I 473 (527)
+.||++|.|
T Consensus 74 ~~Ig~~~~I 82 (145)
T cd03349 74 VIIGNDVWI 82 (145)
T ss_pred cEECCCCEE
Confidence 444444444
No 258
>PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix. A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F ....
Probab=96.53 E-value=0.0018 Score=44.27 Aligned_cols=13 Identities=54% Similarity=0.754 Sum_probs=4.9
Q ss_pred EcCCCEECCCcEE
Q 009720 478 IDKNVKIGKDVVI 490 (527)
Q Consensus 478 I~~~~~Ig~~~~i 490 (527)
|++++.|++++.|
T Consensus 4 Ig~~~~i~~~~~i 16 (36)
T PF00132_consen 4 IGDNVIIGPNAVI 16 (36)
T ss_dssp EETTEEEETTEEE
T ss_pred EcCCCEECCCcEe
Confidence 3333333333333
No 259
>KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism]
Probab=96.30 E-value=0.012 Score=56.88 Aligned_cols=21 Identities=29% Similarity=0.525 Sum_probs=8.5
Q ss_pred EEcCCcEECCCCEEeeeEEeC
Q 009720 424 IVGERSRLDYGVELKDTVMLG 444 (527)
Q Consensus 424 vIg~~~~I~~~~~I~~~~i~~ 444 (527)
+||+-+.||.++.|-..+-+|
T Consensus 170 vigeTAvvg~~vSilH~Vtlg 190 (269)
T KOG4750|consen 170 VIGETAVVGDNVSILHPVTLG 190 (269)
T ss_pred eecceeEeccceeeecceeec
Confidence 444444444444443333333
No 260
>KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=96.16 E-value=0.012 Score=53.13 Aligned_cols=34 Identities=12% Similarity=0.057 Sum_probs=16.3
Q ss_pred EECCCCEEcceeEeecEEcCCcEECCCCEEeeeEEeCC
Q 009720 408 IISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGA 445 (527)
Q Consensus 408 ~I~~g~~I~~~~i~~svIg~~~~I~~~~~I~~~~i~~~ 445 (527)
.|.+++++- .-|.|--.+.|++||+++....+-+
T Consensus 10 kIap~AvVC----vEs~irGdvti~~gcVvHP~a~~iA 43 (190)
T KOG4042|consen 10 KIAPSAVVC----VESDIRGDVTIKEGCVVHPFAVFIA 43 (190)
T ss_pred eecCceEEE----EecccccceEecCCcEecceEEEEc
Confidence 355555554 1234444455555555555444433
No 261
>KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton]
Probab=95.84 E-value=0.03 Score=50.30 Aligned_cols=73 Identities=8% Similarity=0.138 Sum_probs=44.5
Q ss_pred eeEECCCCEEccee--------EeecEEcCCcEECCCCEEeeeEEeCCcccCchhhHHhhhcCCccceEeCCCcEEeeeE
Q 009720 406 DAIISHGCFLRECT--------VEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCI 477 (527)
Q Consensus 406 ~s~I~~g~~I~~~~--------i~~svIg~~~~I~~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~i 477 (527)
.++++.+|.|+++- .=...||+++.|+++|++..+.|..- +.+|+ ||+
T Consensus 60 yCV~ksrsvIRPp~K~FSKg~affp~hiGdhVFieE~cVVnAAqIgsy-------------------Vh~Gk-----nav 115 (184)
T KOG3121|consen 60 YCVLKSRSVIRPPMKIFSKGPAFFPVHIGDHVFIEEECVVNAAQIGSY-------------------VHLGK-----NAV 115 (184)
T ss_pred eEEeccccccCCchHHhcCCceeeeeeecceEEEecceEeehhhheee-------------------eEecc-----cee
Confidence 46666666666431 12356899999998888876655544 66676 555
Q ss_pred EcCCCEECCCcEEeCCCCcCCCccC
Q 009720 478 IDKNVKIGKDVVIVNKDDVQEADRP 502 (527)
Q Consensus 478 I~~~~~Ig~~~~i~~~~~v~~~~~~ 502 (527)
||..+.+.+.++|..+..+...+.+
T Consensus 116 iGrrCVlkdCc~ild~tVlPpet~v 140 (184)
T KOG3121|consen 116 IGRRCVLKDCCRILDDTVLPPETLV 140 (184)
T ss_pred EcCceEhhhheeccCCcccCccccc
Confidence 5555555555655555444443333
No 262
>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]
Probab=95.32 E-value=0.044 Score=51.86 Aligned_cols=18 Identities=33% Similarity=0.453 Sum_probs=10.2
Q ss_pred eEEcCCCEECCCcEEeCC
Q 009720 476 CIIDKNVKIGKDVVIVNK 493 (527)
Q Consensus 476 ~iI~~~~~Ig~~~~i~~~ 493 (527)
+.||++|.||.+++|..+
T Consensus 125 v~IG~~vwIG~~a~IlpG 142 (190)
T COG0110 125 VTIGEDVWIGAGAVILPG 142 (190)
T ss_pred eEECCCeEEcCccEECCC
Confidence 555555555555555544
No 263
>PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A ....
Probab=95.21 E-value=0.022 Score=38.79 Aligned_cols=29 Identities=24% Similarity=0.534 Sum_probs=11.9
Q ss_pred EECCCCEEcc-eeEeecEEcCCcEECCCCEE
Q 009720 408 IISHGCFLRE-CTVEHSIVGERSRLDYGVEL 437 (527)
Q Consensus 408 ~I~~g~~I~~-~~i~~svIg~~~~I~~~~~I 437 (527)
.||++|+|+. +.| ...||++|.|+.|+.|
T Consensus 3 ~IG~~~~ig~~~~i-gi~igd~~~i~~g~~I 32 (34)
T PF14602_consen 3 TIGDNCFIGANSTI-GITIGDGVIIGAGVVI 32 (34)
T ss_dssp EE-TTEEE-TT-EE-TSEE-TTEEE-TTEEE
T ss_pred EECCCEEECccccc-CCEEcCCCEECCCCEE
Confidence 4555555553 222 2455555555555544
No 264
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=95.03 E-value=0.61 Score=40.34 Aligned_cols=98 Identities=12% Similarity=0.033 Sum_probs=66.0
Q ss_pred ceeeCCcchhHHHHHHHHHHcC--CCEEEEEeccCchhHHHHHHHhhccCCcccCCCeEEEeccccCCCCCCCCcccChH
Q 009720 119 AVPVAGCYRLIDIPMSNCINSG--INKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTA 196 (527)
Q Consensus 119 LlpIgGk~pLId~~l~~l~~~G--i~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~~V~vl~~~q~~~~~~~~~~~Gta 196 (527)
++|..|..+++.++++.+.+.+ ..+++|+.+...+...+.+.+.. .. .. .+..+.... ..|.+
T Consensus 2 ii~~~~~~~~l~~~l~s~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~-~~--~~---~~~~~~~~~---------~~g~~ 66 (156)
T cd00761 2 IIPAYNEEPYLERCLESLLAQTYPNFEVIVVDDGSTDGTLEILEEYA-KK--DP---RVIRVINEE---------NQGLA 66 (156)
T ss_pred EEeecCcHHHHHHHHHHHHhCCccceEEEEEeCCCCccHHHHHHHHH-hc--CC---CeEEEEecC---------CCChH
Confidence 3566666689999999999987 78899999887777766664332 11 00 122222111 14888
Q ss_pred HHHHHHHHHHHhhhcCCCCeEEEEcCceeecCCH-HHHHHHH
Q 009720 197 DAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDY-MDFIQSH 237 (527)
Q Consensus 197 ~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~dl-~~ll~~h 237 (527)
.++..++.... .+.++++.+|.++..++ ..++..+
T Consensus 67 ~~~~~~~~~~~------~d~v~~~d~D~~~~~~~~~~~~~~~ 102 (156)
T cd00761 67 AARNAGLKAAR------GEYILFLDADDLLLPDWLERLVAEL 102 (156)
T ss_pred HHHHHHHHHhc------CCEEEEECCCCccCccHHHHHHHHH
Confidence 88988876663 58899999999998775 4443443
No 265
>TIGR03552 F420_cofC 2-phospho-L-lactate guanylyltransferase CofC. Members of this protein family are the CofC enzyme of coenzyme F420 biosynthesis.
Probab=94.39 E-value=0.19 Score=47.82 Aligned_cols=84 Identities=15% Similarity=0.167 Sum_probs=57.5
Q ss_pred hhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCcccCCCeEEEeccccCCCCCCCCcccChHHHHHHHHHHH
Q 009720 127 RLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVF 206 (527)
Q Consensus 127 pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l 206 (527)
|||+|+++.+..+++++++++++. +++.+++. .++ ++++.... .|...+++.++..+
T Consensus 31 ~ll~~~l~~l~~~~~~~vvvv~~~--~~~~~~~~--------~~~---v~~i~~~~----------~G~~~si~~al~~~ 87 (195)
T TIGR03552 31 AMLRDVITALRGAGAGAVLVVSPD--PALLEAAR--------NLG---APVLRDPG----------PGLNNALNAALAEA 87 (195)
T ss_pred HHHHHHHHHHHhcCCCCEEEECCC--HHHHHHHH--------hcC---CEEEecCC----------CCHHHHHHHHHHHh
Confidence 899999999999988889888874 34433331 122 44443221 28899999988766
Q ss_pred HhhhcCCCCeEEEEcCceee--cCCHHHHHHHH
Q 009720 207 EDAKNRNIENVAILCGDHLY--RMDYMDFIQSH 237 (527)
Q Consensus 207 ~~~~~~~~e~~Lvl~gD~l~--~~dl~~ll~~h 237 (527)
.. ..+.++++.||+-+ ...+..+++..
T Consensus 88 ~~----~~~~vlv~~~D~P~l~~~~i~~l~~~~ 116 (195)
T TIGR03552 88 RE----PGGAVLILMADLPLLTPRELKRLLAAA 116 (195)
T ss_pred hc----cCCeEEEEeCCCCCCCHHHHHHHHHhc
Confidence 41 23589999999843 45577887765
No 266
>PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A ....
Probab=93.65 E-value=0.089 Score=35.78 Aligned_cols=14 Identities=7% Similarity=0.283 Sum_probs=6.7
Q ss_pred EEcCCcEECCCCEE
Q 009720 424 IVGERSRLDYGVEL 437 (527)
Q Consensus 424 vIg~~~~I~~~~~I 437 (527)
.||++|.|+.+|.|
T Consensus 3 ~IG~~~~ig~~~~i 16 (34)
T PF14602_consen 3 TIGDNCFIGANSTI 16 (34)
T ss_dssp EE-TTEEE-TT-EE
T ss_pred EECCCEEECccccc
Confidence 56666666666654
No 267
>KOG2388 consensus UDP-N-acetylglucosamine pyrophosphorylase [Cell wall/membrane/envelope biogenesis]
Probab=93.36 E-value=0.49 Score=50.81 Aligned_cols=126 Identities=23% Similarity=0.342 Sum_probs=71.6
Q ss_pred CCceEEEEEeCCCCCccccCccCCCccceeeC---CcchhHHHHHHHHHHc----------CCC-EEEEEec-cCchhHH
Q 009720 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVA---GCYRLIDIPMSNCINS----------GIN-KIFVLTQ-FNSASLN 156 (527)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIg---Gk~pLId~~l~~l~~~----------Gi~-~I~Iv~~-~~~~~i~ 156 (527)
..++.++++|||.||||+ ..-||.+.|+| |+ .|+++..+.+... |.+ ..+|.|. ...+.-.
T Consensus 95 ~~~~a~~llaGgqgtRLg---~~~pkg~~~~G~~~~~-slf~~qae~il~lq~~a~~~~~~~~~I~w~ImtS~~T~e~T~ 170 (477)
T KOG2388|consen 95 EGKVAVVLLAGGQGTRLG---SSGPKGCYPIGLPSGK-SLFQIQAERILKLQELASMAVSDGVDIPWYIMTSAFTHEATL 170 (477)
T ss_pred cCcceEEEeccCceeeec---cCCCcceeecCCcccc-chhhhhHHHHHHHHHHHhhhhccCCceEEEEecCCCccHHhH
Confidence 467899999999999997 56899999998 44 5888877665431 321 2355554 3455556
Q ss_pred HHHHH-hhccCCcccCCCeEEEec-----cccCCCCCCC-------CcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCc
Q 009720 157 RHIAR-TYFGNGTNFGDGFVEVLA-----ATQTPGESGK-------NWFQGTADAVRQFTWVFEDAKNRNIENVAILCGD 223 (527)
Q Consensus 157 ~hl~~-~y~~~~~~~~~~~V~vl~-----~~q~~~~~~~-------~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD 223 (527)
+|+.. .||+-.. ..|.+.. ..+..+.-.. .-+.|.++..+.+...++|+...+...+=+.+-|
T Consensus 171 ~~f~~~~~FGl~~----~qv~~f~Q~~l~c~~~~gk~~le~k~~~a~ap~gngg~y~ai~~~l~dm~~rgi~~~hiy~Vd 246 (477)
T KOG2388|consen 171 EYFESHKYFGLKP----EQVTFFQQGKLPCLDLDGKFILEQKNSLAAAPDGNGGLYRAIKDQLEDMAARGIFYDHIYCVD 246 (477)
T ss_pred hHHhhcCCCCCCh----hHeeeeecccccccccCCceeccCccchhcCCCCCcHHHHHHHhhhhHHHhhcccEEEEEEec
Confidence 66653 4554320 0111111 1111100000 1125776666666666777766666666566666
Q ss_pred ee
Q 009720 224 HL 225 (527)
Q Consensus 224 ~l 225 (527)
.+
T Consensus 247 nv 248 (477)
T KOG2388|consen 247 NV 248 (477)
T ss_pred ce
Confidence 53
No 268
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=92.45 E-value=3.2 Score=36.67 Aligned_cols=110 Identities=12% Similarity=0.152 Sum_probs=71.5
Q ss_pred ceeeCCcchhHHHHHHHHHHc--CCCEEEEEeccCchhHHHHHHHhhccCCcccCCCeEEEeccccCCCCCCCCcccChH
Q 009720 119 AVPVAGCYRLIDIPMSNCINS--GINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTA 196 (527)
Q Consensus 119 LlpIgGk~pLId~~l~~l~~~--Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~~V~vl~~~q~~~~~~~~~~~Gta 196 (527)
.+|.-++...|..+|+.+.+. ...+|+|+-....+...+.+ +++... ...++++...+. .|.+
T Consensus 3 vip~~n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~~~~~~-~~~~~~-----~~~i~~i~~~~n---------~g~~ 67 (169)
T PF00535_consen 3 VIPTYNEAEYLERTLESLLKQTDPDFEIIVVDDGSTDETEEIL-EEYAES-----DPNIRYIRNPEN---------LGFS 67 (169)
T ss_dssp EEEESS-TTTHHHHHHHHHHHSGCEEEEEEEECS-SSSHHHHH-HHHHCC-----STTEEEEEHCCC---------SHHH
T ss_pred EEEeeCCHHHHHHHHHHHhhccCCCEEEEEecccccccccccc-cccccc-----cccccccccccc---------cccc
Confidence 456666656888899988776 45677777665545555445 344321 123677664443 3788
Q ss_pred HHHHHHHHHHHhhhcCCCCeEEEEcCceeecCC-HHHHHHHHHHcCCcEEEEEE
Q 009720 197 DAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVDRDADITISCA 249 (527)
Q Consensus 197 ~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~d-l~~ll~~h~~~~ad~tv~~~ 249 (527)
.++..+..... .+.++++..|.++..+ +..+++.+.+.+.++.+...
T Consensus 68 ~~~n~~~~~a~------~~~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~ 115 (169)
T PF00535_consen 68 AARNRGIKHAK------GEYILFLDDDDIISPDWLEELVEALEKNPPDVVIGSV 115 (169)
T ss_dssp HHHHHHHHH--------SSEEEEEETTEEE-TTHHHHHHHHHHHCTTEEEEEEE
T ss_pred ccccccccccc------eeEEEEeCCCceEcHHHHHHHHHHHHhCCCcEEEEEE
Confidence 88888877664 4799999999999877 68888888887776555443
No 269
>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase []. ; GO: 0016772 transferase activity, transferring phosphorus-containing groups
Probab=89.46 E-value=0.74 Score=49.51 Aligned_cols=98 Identities=13% Similarity=0.190 Sum_probs=51.5
Q ss_pred hhcCceEEEEec-ceEEecCCHHHHHHHHHHhhccCCCCccCCCCCCCCCCCccCCCeee-eceeeeeeEECCCCEEcc-
Q 009720 341 IMEHDVQAYIFR-DYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKI-DNCRIKDAIISHGCFLRE- 417 (527)
Q Consensus 341 i~~~~V~~~~~~-g~w~dIgt~~d~~~An~~ll~~~~~~~~~~~~~~i~~~~~~~~p~~i-~~~~i~~s~I~~g~~I~~- 417 (527)
+++..+....+. +.++-+||-.+|++--..- ..+.+ . ...+...+.. .+..+ .++.|.+|+|..+|.|++
T Consensus 224 Lr~~~l~vv~l~~~~F~H~GTs~E~L~~lt~~----~~l~~-~-~~~~~~~~~~-~~~~~~~~~~VinSil~~~~~vg~~ 296 (414)
T PF07959_consen 224 LRGTPLNVVPLPNGKFYHFGTSREYLEHLTSD----SELGI-M-RRKFSHSPAT-TPSDSEASSCVINSILEGGVSVGPG 296 (414)
T ss_pred hhhccccccccCCceEEEecCCHHHHHhhccC----ccccc-c-eeeeeccccc-cccccCCCeeEEEeEecCCceECCC
Confidence 344455555554 5677889988766542222 11100 0 0000001110 11122 224556777777777774
Q ss_pred eeEeecEEcCCcEECCCCEEeeeEEeCC
Q 009720 418 CTVEHSIVGERSRLDYGVELKDTVMLGA 445 (527)
Q Consensus 418 ~~i~~svIg~~~~I~~~~~I~~~~i~~~ 445 (527)
+.|+||.|+.+++||++|.|-+.-+...
T Consensus 297 svIe~s~l~~~~~IG~~cIisGv~~~~~ 324 (414)
T PF07959_consen 297 SVIEHSHLGGPWSIGSNCIISGVDINSW 324 (414)
T ss_pred CEEEeeecCCCCEECCCCEEECCccccc
Confidence 5667777777777777777766544443
No 270
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=82.23 E-value=21 Score=34.17 Aligned_cols=106 Identities=11% Similarity=0.135 Sum_probs=64.7
Q ss_pred ceeeCCcchhHHHHHHHHHHcCC----CEEEEEeccCchhHHHHHHHhhccCCcccCCCeEEEeccccCCCCCCCCcccC
Q 009720 119 AVPVAGCYRLIDIPMSNCINSGI----NKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQG 194 (527)
Q Consensus 119 LlpIgGk~pLId~~l~~l~~~Gi----~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~~V~vl~~~q~~~~~~~~~~~G 194 (527)
++|.-+..+.+..+++.+.+... -+|+|+-+...++..+.+. .+... ...+.++.... .|
T Consensus 5 iip~~n~~~~l~~~l~sl~~q~~~~~~~evivvd~~s~d~~~~~~~-~~~~~-----~~~v~~i~~~~----------~~ 68 (249)
T cd02525 5 IIPVRNEEKYIEELLESLLNQSYPKDLIEIIVVDGGSTDGTREIVQ-EYAAK-----DPRIRLIDNPK----------RI 68 (249)
T ss_pred EEEcCCchhhHHHHHHHHHhccCCCCccEEEEEeCCCCccHHHHHH-HHHhc-----CCeEEEEeCCC----------CC
Confidence 35666655677888888876643 3677776665555555553 33221 11255554221 25
Q ss_pred hHHHHHHHHHHHHhhhcCCCCeEEEEcCceeecCC-HHHHHHHHHHcCCcEEE
Q 009720 195 TADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVDRDADITI 246 (527)
Q Consensus 195 ta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~d-l~~ll~~h~~~~ad~tv 246 (527)
-+.++..+..... .+.++++.+|.+...+ +..+++.+.+.+.++..
T Consensus 69 ~~~a~N~g~~~a~------~d~v~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~ 115 (249)
T cd02525 69 QSAGLNIGIRNSR------GDIIIRVDAHAVYPKDYILELVEALKRTGADNVG 115 (249)
T ss_pred chHHHHHHHHHhC------CCEEEEECCCccCCHHHHHHHHHHHhcCCCCEEe
Confidence 5667776665443 5889999999988766 68888766655555443
No 271
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=82.04 E-value=20 Score=32.68 Aligned_cols=108 Identities=14% Similarity=0.068 Sum_probs=64.5
Q ss_pred eeeCCcchhHHHHHHHHHHc----CCCEEEEEeccCchhHHHHHHHhhccCCcccCCCeEEEeccccCCCCCCCCcccCh
Q 009720 120 VPVAGCYRLIDIPMSNCINS----GINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGT 195 (527)
Q Consensus 120 lpIgGk~pLId~~l~~l~~~----Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~~V~vl~~~q~~~~~~~~~~~Gt 195 (527)
+|..+....|..+|+.+.+. ...+|+|+-+...+...+.+. .+.. ++. .+.++...+. .|-
T Consensus 3 i~~~n~~~~l~~~l~sl~~~~~~~~~~eiivvd~~s~d~~~~~~~-~~~~---~~~--~~~~~~~~~n---------~G~ 67 (185)
T cd04179 3 IPAYNEEENIPELVERLLAVLEEGYDYEIIVVDDGSTDGTAEIAR-ELAA---RVP--RVRVIRLSRN---------FGK 67 (185)
T ss_pred ecccChHhhHHHHHHHHHHHhccCCCEEEEEEcCCCCCChHHHHH-HHHH---hCC--CeEEEEccCC---------CCc
Confidence 45555534566777777766 256777776554444444442 3311 111 1344443333 477
Q ss_pred HHHHHHHHHHHHhhhcCCCCeEEEEcCceeecCC-HHHHHHHHHHcCCcEEEEE
Q 009720 196 ADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVDRDADITISC 248 (527)
Q Consensus 196 a~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~d-l~~ll~~h~~~~ad~tv~~ 248 (527)
+.++..+..... .+.++++.+|.....+ +..+++...+.+.++.+..
T Consensus 68 ~~a~n~g~~~a~------gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~ 115 (185)
T cd04179 68 GAAVRAGFKAAR------GDIVVTMDADLQHPPEDIPKLLEKLLEGGADVVIGS 115 (185)
T ss_pred cHHHHHHHHHhc------CCEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEEE
Confidence 888877765543 4889999999887666 6778876556666554443
No 272
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=80.93 E-value=36 Score=29.98 Aligned_cols=98 Identities=8% Similarity=0.076 Sum_probs=62.6
Q ss_pred ceeeCCcchhHHHHHHHHHHcC--CCEEEEEeccCchhHHHHHHHhhccCCcccCCCeEEEeccccCCCCCCCCcccChH
Q 009720 119 AVPVAGCYRLIDIPMSNCINSG--INKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTA 196 (527)
Q Consensus 119 LlpIgGk~pLId~~l~~l~~~G--i~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~~V~vl~~~q~~~~~~~~~~~Gta 196 (527)
++|.-++..++..+++.+.+.- ..+|+|+-....+...+.+.+ +.. .+.++..... .|.+
T Consensus 2 ii~~~~~~~~l~~~l~sl~~~~~~~~~iiivdd~s~~~~~~~~~~-~~~--------~~~~~~~~~~---------~g~~ 63 (166)
T cd04186 2 IIVNYNSLEYLKACLDSLLAQTYPDFEVIVVDNASTDGSVELLRE-LFP--------EVRLIRNGEN---------LGFG 63 (166)
T ss_pred EEEecCCHHHHHHHHHHHHhccCCCeEEEEEECCCCchHHHHHHH-hCC--------CeEEEecCCC---------cChH
Confidence 3566666578889999987763 457777776555454444532 211 2455432222 4888
Q ss_pred HHHHHHHHHHHhhhcCCCCeEEEEcCceeecCC-HHHHHHHHHHc
Q 009720 197 DAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVDR 240 (527)
Q Consensus 197 ~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~d-l~~ll~~h~~~ 240 (527)
.++..++...+ .+.++++..|..+..+ +..+++...+.
T Consensus 64 ~a~n~~~~~~~------~~~i~~~D~D~~~~~~~l~~~~~~~~~~ 102 (166)
T cd04186 64 AGNNQGIREAK------GDYVLLLNPDTVVEPGALLELLDAAEQD 102 (166)
T ss_pred HHhhHHHhhCC------CCEEEEECCCcEECccHHHHHHHHHHhC
Confidence 88888776653 5889999999988766 57777655443
No 273
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=77.53 E-value=29 Score=32.76 Aligned_cols=109 Identities=13% Similarity=0.111 Sum_probs=63.1
Q ss_pred eeeCCcchhHHHHHHHHHHc------CCCEEEEEeccCchhHHHHHHHhhccCCcccCCCeEEEeccccCCCCCCCCccc
Q 009720 120 VPVAGCYRLIDIPMSNCINS------GINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQ 193 (527)
Q Consensus 120 lpIgGk~pLId~~l~~l~~~------Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~~V~vl~~~q~~~~~~~~~~~ 193 (527)
+|.-+....|..+++.+.+. ..-+|+|+-+...+...+.+ +.|... ++. .+.++...+. .
T Consensus 3 ip~yN~~~~l~~~l~~l~~~~~~~~~~~~eiivvdd~S~D~t~~~~-~~~~~~---~~~-~i~~i~~~~n---------~ 68 (211)
T cd04188 3 IPAYNEEKRLPPTLEEAVEYLEERPSFSYEIIVVDDGSKDGTAEVA-RKLARK---NPA-LIRVLTLPKN---------R 68 (211)
T ss_pred EcccChHHHHHHHHHHHHHHHhccCCCCEEEEEEeCCCCCchHHHH-HHHHHh---CCC-cEEEEEcccC---------C
Confidence 55555434566667666553 23467666554443333333 233111 111 1344443322 4
Q ss_pred ChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeecCC-HHHHHHHHHHcCCcEEEEE
Q 009720 194 GTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVDRDADITISC 248 (527)
Q Consensus 194 Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~d-l~~ll~~h~~~~ad~tv~~ 248 (527)
|-+.++..+..... .+.++++.+|..+..+ +..+++...+.+.++.+..
T Consensus 69 G~~~a~~~g~~~a~------gd~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~g~ 118 (211)
T cd04188 69 GKGGAVRAGMLAAR------GDYILFADADLATPFEELEKLEEALKTSGYDIAIGS 118 (211)
T ss_pred CcHHHHHHHHHHhc------CCEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEEE
Confidence 88889988876553 4889999999988765 6888877555666665543
No 274
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=77.47 E-value=40 Score=31.78 Aligned_cols=108 Identities=11% Similarity=0.095 Sum_probs=63.4
Q ss_pred ceeeCCcchhHHHHHHHHHHcC---CCEEEEEeccCchhHHHHHHHhhccCCcccCCCeEEEeccccCCCCCCCCcccCh
Q 009720 119 AVPVAGCYRLIDIPMSNCINSG---INKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGT 195 (527)
Q Consensus 119 LlpIgGk~pLId~~l~~l~~~G---i~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~~V~vl~~~q~~~~~~~~~~~Gt 195 (527)
++|.-+....|..+++.+.+.- --+|+||-....+...+.+ +.|... . ..+.++..... .|-
T Consensus 2 iIp~yn~~~~l~~~l~sl~~q~~~~~~eiiiVDd~S~d~t~~~~-~~~~~~---~--~~i~~~~~~~n---------~G~ 66 (224)
T cd06442 2 IIPTYNERENIPELIERLDAALKGIDYEIIVVDDNSPDGTAEIV-RELAKE---Y--PRVRLIVRPGK---------RGL 66 (224)
T ss_pred eEeccchhhhHHHHHHHHHHhhcCCCeEEEEEeCCCCCChHHHH-HHHHHh---C--CceEEEecCCC---------CCh
Confidence 3566665456777777776642 2467666554434443333 333211 1 12455443322 488
Q ss_pred HHHHHHHHHHHHhhhcCCCCeEEEEcCceeecCC-HHHHHHHHHHcCCcEEEE
Q 009720 196 ADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVDRDADITIS 247 (527)
Q Consensus 196 a~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~d-l~~ll~~h~~~~ad~tv~ 247 (527)
+.|+..+..... .+.++++.+|.....+ +..+++...+.+.++...
T Consensus 67 ~~a~n~g~~~a~------gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g 113 (224)
T cd06442 67 GSAYIEGFKAAR------GDVIVVMDADLSHPPEYIPELLEAQLEGGADLVIG 113 (224)
T ss_pred HHHHHHHHHHcC------CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCEEEE
Confidence 888887765543 4788899999887665 677777655556665443
No 275
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=76.06 E-value=46 Score=31.64 Aligned_cols=97 Identities=13% Similarity=0.182 Sum_probs=62.5
Q ss_pred ceeeCCcc-hhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCcccCCCeEEEeccccCCCCCCCCcccChHH
Q 009720 119 AVPVAGCY-RLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTAD 197 (527)
Q Consensus 119 LlpIgGk~-pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~~V~vl~~~q~~~~~~~~~~~Gta~ 197 (527)
++|.-|.. ..|..+|+.+.+....+|+||.....+...+.+.+.. .. ..+.++.... .|-+.
T Consensus 5 vIp~~ne~~~~l~~~l~sl~~q~~~eiivvdd~s~d~~~~~l~~~~-----~~--~~~~v~~~~~----------~g~~~ 67 (235)
T cd06434 5 IIPVYDEDPDVFRECLRSILRQKPLEIIVVTDGDDEPYLSILSQTV-----KY--GGIFVITVPH----------PGKRR 67 (235)
T ss_pred EEeecCCChHHHHHHHHHHHhCCCCEEEEEeCCCChHHHHHHHhhc-----cC--CcEEEEecCC----------CChHH
Confidence 45666664 6888899988876556888887776666555552211 11 1244443221 36777
Q ss_pred HHHHHHHHHHhhhcCCCCeEEEEcCceeecCC-HHHHHHHHH
Q 009720 198 AVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHV 238 (527)
Q Consensus 198 al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~d-l~~ll~~h~ 238 (527)
++..++... ..+.++++.+|..+..+ +..+++...
T Consensus 68 a~n~g~~~a------~~d~v~~lD~D~~~~~~~l~~l~~~~~ 103 (235)
T cd06434 68 ALAEGIRHV------TTDIVVLLDSDTVWPPNALPEMLKPFE 103 (235)
T ss_pred HHHHHHHHh------CCCEEEEECCCceeChhHHHHHHHhcc
Confidence 777665443 35899999999999877 577776654
No 276
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=75.74 E-value=45 Score=29.04 Aligned_cols=101 Identities=13% Similarity=0.060 Sum_probs=60.1
Q ss_pred ceeeCCcchhHHHHHHHHHHcC--CCEEEEEeccCchhHHHHHHHhhccCCcccCCCeEEEeccccCCCCCCCCcccChH
Q 009720 119 AVPVAGCYRLIDIPMSNCINSG--INKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTA 196 (527)
Q Consensus 119 LlpIgGk~pLId~~l~~l~~~G--i~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~~V~vl~~~q~~~~~~~~~~~Gta 196 (527)
.+|.-+....|..+|+.+.+.. .-+|+|+-....+...+.+. .+.... . ..+.++...+. .|.+
T Consensus 2 iip~~n~~~~l~~~l~sl~~q~~~~~~iivvdd~s~d~t~~~~~-~~~~~~---~-~~~~~~~~~~~---------~g~~ 67 (180)
T cd06423 2 IVPAYNEEAVIERTIESLLALDYPKLEVIVVDDGSTDDTLEILE-ELAALY---I-RRVLVVRDKEN---------GGKA 67 (180)
T ss_pred eecccChHHHHHHHHHHHHhCCCCceEEEEEeCCCccchHHHHH-HHhccc---c-ceEEEEEeccc---------CCch
Confidence 3566665467888888888764 44677776655544444443 331110 0 11333332222 3788
Q ss_pred HHHHHHHHHHHhhhcCCCCeEEEEcCceeecCC-HHHHHHHHHH
Q 009720 197 DAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVD 239 (527)
Q Consensus 197 ~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~d-l~~ll~~h~~ 239 (527)
.++..++.... .+.++++.+|.+...+ +..++..+.+
T Consensus 68 ~~~n~~~~~~~------~~~i~~~D~D~~~~~~~l~~~~~~~~~ 105 (180)
T cd06423 68 GALNAGLRHAK------GDIVVVLDADTILEPDALKRLVVPFFA 105 (180)
T ss_pred HHHHHHHHhcC------CCEEEEECCCCCcChHHHHHHHHHhcc
Confidence 88887766543 5889999999988766 4666455544
No 277
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=74.34 E-value=65 Score=31.04 Aligned_cols=98 Identities=16% Similarity=0.151 Sum_probs=59.5
Q ss_pred cceeeCCcchhHHHHHHHHHHcCC----CEEEEEeccCchhHHHHHHHhhccCCcccCCCeEEEeccccCCCCCCCCccc
Q 009720 118 PAVPVAGCYRLIDIPMSNCINSGI----NKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQ 193 (527)
Q Consensus 118 pLlpIgGk~pLId~~l~~l~~~Gi----~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~~V~vl~~~q~~~~~~~~~~~ 193 (527)
-++|.-|....|..+|+.+.+... -+|+|+.....+...+.+ +.+... .+.++..... .
T Consensus 33 Vvip~~n~~~~l~~~l~si~~q~~~~~~~eiivvdd~s~d~t~~~~-~~~~~~-------~v~~i~~~~~---------~ 95 (251)
T cd06439 33 IIIPAYNEEAVIEAKLENLLALDYPRDRLEIIVVSDGSTDGTAEIA-REYADK-------GVKLLRFPER---------R 95 (251)
T ss_pred EEEecCCcHHHHHHHHHHHHhCcCCCCcEEEEEEECCCCccHHHHH-HHHhhC-------cEEEEEcCCC---------C
Confidence 456666664567777777665432 257776655444444444 333111 2455543222 3
Q ss_pred ChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeecCC-HHHHHHHHH
Q 009720 194 GTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHV 238 (527)
Q Consensus 194 Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~d-l~~ll~~h~ 238 (527)
|-+.++..+..... .+.++++.+|.+...+ +..+++...
T Consensus 96 g~~~a~n~gi~~a~------~d~i~~lD~D~~~~~~~l~~l~~~~~ 135 (251)
T cd06439 96 GKAAALNRALALAT------GEIVVFTDANALLDPDALRLLVRHFA 135 (251)
T ss_pred ChHHHHHHHHHHcC------CCEEEEEccccCcCHHHHHHHHHHhc
Confidence 77888887776553 4899999999988766 577777654
No 278
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=70.72 E-value=67 Score=29.61 Aligned_cols=103 Identities=15% Similarity=0.173 Sum_probs=58.4
Q ss_pred eeeCCcc-hhHHHHHHHHHHcCC--CEEEEEeccCch-hHHHHHHHhhccCCcccCCCeEEEeccccCCCCCCCCcccCh
Q 009720 120 VPVAGCY-RLIDIPMSNCINSGI--NKIFVLTQFNSA-SLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGT 195 (527)
Q Consensus 120 lpIgGk~-pLId~~l~~l~~~Gi--~~I~Iv~~~~~~-~i~~hl~~~y~~~~~~~~~~~V~vl~~~q~~~~~~~~~~~Gt 195 (527)
+|.-+.. ..+..+++.+.+.-. -+|+|+-+.... .+...+ +.|.... ..+.++..... .|-
T Consensus 7 i~~~n~~~~~l~~~l~sl~~q~~~~~eiivvd~gs~d~~~~~~~-~~~~~~~-----~~~~~~~~~~~---------~g~ 71 (202)
T cd04184 7 MPVYNTPEKYLREAIESVRAQTYPNWELCIADDASTDPEVKRVL-KKYAAQD-----PRIKVVFREEN---------GGI 71 (202)
T ss_pred EecccCcHHHHHHHHHHHHhCcCCCeEEEEEeCCCCChHHHHHH-HHHHhcC-----CCEEEEEcccC---------CCH
Confidence 5555554 567777777766533 266666544333 233333 3332211 12455433222 377
Q ss_pred HHHHHHHHHHHHhhhcCCCCeEEEEcCceeecCC-HHHHHHHH-HHcCCc
Q 009720 196 ADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSH-VDRDAD 243 (527)
Q Consensus 196 a~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~d-l~~ll~~h-~~~~ad 243 (527)
+.++..+..... .+.++++..|.....+ +..+++.+ ...+.+
T Consensus 72 ~~a~n~g~~~a~------~d~i~~ld~D~~~~~~~l~~~~~~~~~~~~~~ 115 (202)
T cd04184 72 SAATNSALELAT------GEFVALLDHDDELAPHALYEVVKALNEHPDAD 115 (202)
T ss_pred HHHHHHHHHhhc------CCEEEEECCCCcCChHHHHHHHHHHHhCCCCC
Confidence 888877765442 4789999999988776 57777776 333443
No 279
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=69.43 E-value=73 Score=32.06 Aligned_cols=105 Identities=10% Similarity=0.086 Sum_probs=63.2
Q ss_pred ceeeCCcc-hhHHHHHHHHHHcC---C-CEEEEEeccCchhHHHHHHHhhccCCcccCCCeEEEeccccCCCCCCCCccc
Q 009720 119 AVPVAGCY-RLIDIPMSNCINSG---I-NKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQ 193 (527)
Q Consensus 119 LlpIgGk~-pLId~~l~~l~~~G---i-~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~~V~vl~~~q~~~~~~~~~~~ 193 (527)
.+|.-+.. .+|..+|+.+.+.- . .+|+||-+...+.-.+.+.+.+... . ...+.++...+. .
T Consensus 3 IIp~~N~~~~~l~~~l~Sl~~~~~~~~~~EIIvVDd~S~d~t~~~~~~~~~~~--~--~~~v~vi~~~~n---------~ 69 (299)
T cd02510 3 IIIFHNEALSTLLRTVHSVINRTPPELLKEIILVDDFSDKPELKLLLEEYYKK--Y--LPKVKVLRLKKR---------E 69 (299)
T ss_pred EEEEecCcHHHHHHHHHHHHhcCchhcCCEEEEEECCCCchHHHHHHHHHHhh--c--CCcEEEEEcCCC---------C
Confidence 35666664 57888888887642 1 3777776554443333332211111 1 123666654433 3
Q ss_pred ChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeecCC-HHHHHHHHHHcCC
Q 009720 194 GTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVDRDA 242 (527)
Q Consensus 194 Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~d-l~~ll~~h~~~~a 242 (527)
|-+.+.-.+.... ..+.++++++|.....+ +..+++...+...
T Consensus 70 G~~~a~N~g~~~A------~gd~i~fLD~D~~~~~~wL~~ll~~l~~~~~ 113 (299)
T cd02510 70 GLIRARIAGARAA------TGDVLVFLDSHCEVNVGWLEPLLARIAENRK 113 (299)
T ss_pred CHHHHHHHHHHHc------cCCEEEEEeCCcccCccHHHHHHHHHHhCCC
Confidence 7777777766543 35899999999988766 6888887665443
No 280
>COG1920 Predicted nucleotidyltransferase, CobY/MobA/RfbA family [General function prediction only]
Probab=69.31 E-value=86 Score=30.17 Aligned_cols=105 Identities=17% Similarity=0.090 Sum_probs=61.7
Q ss_pred eEEEEEe---CCCCCccccCcc-CCCccceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCccc
Q 009720 95 VAAIILG---GGAGTKLFPLTL-RAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNF 170 (527)
Q Consensus 95 m~aVILA---aG~GtRL~PLT~-~~PKpLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~ 170 (527)
|.+||.- ++.-|||.|.-. .--+-++ +-|+-.++..+... +.+|.|++... ++-. +
T Consensus 1 mr~iIPvk~~~~aKTRLs~~lS~eeRe~~~-----laML~dvi~Al~~~-~~~i~Vvtpde--~~~~-----~------- 60 (210)
T COG1920 1 MRAIIPVKRLADAKTRLSPVLSAEERENFA-----LAMLVDVLGALAGV-LGEITVVTPDE--EVLV-----P------- 60 (210)
T ss_pred CceEEeccccCcchhccccccCHHHHHHHH-----HHHHHHHHHHhhhh-cCCceEEcCCh--Hhhh-----h-------
Confidence 4566664 466788877421 1111111 25777888888655 78999999642 1211 1
Q ss_pred CCCeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce--eecCCHHHHHHHH
Q 009720 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSH 237 (527)
Q Consensus 171 ~~~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~--l~~~dl~~ll~~h 237 (527)
..+ .+++... +.-.|+.++++.+.. .+.++|+.+|. +...+++++++..
T Consensus 61 a~~-~~vl~d~------------dLN~Ai~aa~~~~~~-----p~~v~vvmaDLPLl~~~~i~~~~~~~ 111 (210)
T COG1920 61 ATK-LEVLADP------------DLNTAINAALDEIPL-----PSEVIVVMADLPLLSPEHIERALSAA 111 (210)
T ss_pred ccc-ceeeecc------------chHHHHHHHHhhCCC-----CcceEEEecccccCCHHHHHHHHHhc
Confidence 111 2444431 344678888776651 26799999998 4456788887754
No 281
>PRK10073 putative glycosyl transferase; Provisional
Probab=68.38 E-value=57 Score=33.76 Aligned_cols=107 Identities=16% Similarity=0.139 Sum_probs=64.0
Q ss_pred ceeeCCcchhHHHHHHHHHHcCCC--EEEEEeccCchhHHHHHHHhhccCCcccCCCeEEEeccccCCCCCCCCcccChH
Q 009720 119 AVPVAGCYRLIDIPMSNCINSGIN--KIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTA 196 (527)
Q Consensus 119 LlpIgGk~pLId~~l~~l~~~Gi~--~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~~V~vl~~~q~~~~~~~~~~~Gta 196 (527)
.+|+-+....|..+|+.+.+.-.. +|+||-....+.-.+.+ +.|... ...+.++... . .|.+
T Consensus 11 IIP~yN~~~~L~~~l~Sl~~Qt~~~~EIIiVdDgStD~t~~i~-~~~~~~-----~~~i~vi~~~-n---------~G~~ 74 (328)
T PRK10073 11 IIPLYNAGKDFRAFMESLIAQTWTALEIIIVNDGSTDNSVEIA-KHYAEN-----YPHVRLLHQA-N---------AGVS 74 (328)
T ss_pred EEeccCCHHHHHHHHHHHHhCCCCCeEEEEEeCCCCccHHHHH-HHHHhh-----CCCEEEEECC-C---------CChH
Confidence 356655546788888888776332 56555543333222222 344221 1236666421 1 3788
Q ss_pred HHHHHHHHHHHhhhcCCCCeEEEEcCceeecCC-HHHHHHHHHHcCCcEEEE
Q 009720 197 DAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVDRDADITIS 247 (527)
Q Consensus 197 ~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~d-l~~ll~~h~~~~ad~tv~ 247 (527)
.|.-.++... ..+.++++.+|.+...+ +..+++...+.+.|+.+.
T Consensus 75 ~arN~gl~~a------~g~yi~flD~DD~~~p~~l~~l~~~~~~~~~dvv~~ 120 (328)
T PRK10073 75 VARNTGLAVA------TGKYVAFPDADDVVYPTMYETLMTMALEDDLDVAQC 120 (328)
T ss_pred HHHHHHHHhC------CCCEEEEECCCCccChhHHHHHHHHHHhCCCCEEEE
Confidence 7877666544 35899999999988766 577787766667776543
No 282
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=68.20 E-value=62 Score=31.41 Aligned_cols=49 Identities=20% Similarity=0.099 Sum_probs=35.2
Q ss_pred cChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeecCC-HHHHHHHHHHcCCcEEEE
Q 009720 193 QGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVDRDADITIS 247 (527)
Q Consensus 193 ~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~d-l~~ll~~h~~~~ad~tv~ 247 (527)
.|-+.|+..+.... ..+.++++.+|..++.+ +..+++...+.+++++..
T Consensus 79 ~G~~~a~n~g~~~a------~g~~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g 128 (243)
T PLN02726 79 LGLGTAYIHGLKHA------SGDFVVIMDADLSHHPKYLPSFIKKQRETGADIVTG 128 (243)
T ss_pred CCHHHHHHHHHHHc------CCCEEEEEcCCCCCCHHHHHHHHHHHHhcCCcEEEE
Confidence 37788887776543 25789999999988665 578888766667766543
No 283
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=67.54 E-value=1e+02 Score=28.38 Aligned_cols=99 Identities=11% Similarity=0.113 Sum_probs=58.9
Q ss_pred ceeeCCcc--hhHHHHHHHHHHcC--CCEEEEEeccC-chhHHHHHHHhhccCCcccCCCeEEEeccccCCCCCCCCccc
Q 009720 119 AVPVAGCY--RLIDIPMSNCINSG--INKIFVLTQFN-SASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQ 193 (527)
Q Consensus 119 LlpIgGk~--pLId~~l~~l~~~G--i~~I~Iv~~~~-~~~i~~hl~~~y~~~~~~~~~~~V~vl~~~q~~~~~~~~~~~ 193 (527)
++|+-+.. ..|..+|+.+.+.- -.+|+||-... .+...+.+ +.|... ++ +.++...+. .
T Consensus 3 iip~~n~~~~~~l~~~l~Sl~~q~~~~~eiiivdd~ss~d~t~~~~-~~~~~~---~~---i~~i~~~~n---------~ 66 (201)
T cd04195 3 LMSVYIKEKPEFLREALESILKQTLPPDEVVLVKDGPVTQSLNEVL-EEFKRK---LP---LKVVPLEKN---------R 66 (201)
T ss_pred EEEccccchHHHHHHHHHHHHhcCCCCcEEEEEECCCCchhHHHHH-HHHHhc---CC---eEEEEcCcc---------c
Confidence 46666552 27889999987753 25666665443 23333333 344221 11 455543332 3
Q ss_pred ChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeecCC-HHHHHHHHHH
Q 009720 194 GTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVD 239 (527)
Q Consensus 194 Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~d-l~~ll~~h~~ 239 (527)
|.+.+...+.... ..+.++++.+|.+...+ +..+++...+
T Consensus 67 G~~~a~N~g~~~a------~gd~i~~lD~Dd~~~~~~l~~~~~~~~~ 107 (201)
T cd04195 67 GLGKALNEGLKHC------TYDWVARMDTDDISLPDRFEKQLDFIEK 107 (201)
T ss_pred cHHHHHHHHHHhc------CCCEEEEeCCccccCcHHHHHHHHHHHh
Confidence 8888887776543 35889999999988766 5777776543
No 284
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=66.87 E-value=1e+02 Score=29.70 Aligned_cols=110 Identities=12% Similarity=-0.016 Sum_probs=62.6
Q ss_pred ceeeCCcchhHHHHHHHHHHcCC----CEEEEEeccCchhHHHHHHHhhccCCcccCCCeEEEeccccCCCCCCCCcccC
Q 009720 119 AVPVAGCYRLIDIPMSNCINSGI----NKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQG 194 (527)
Q Consensus 119 LlpIgGk~pLId~~l~~l~~~Gi----~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~~V~vl~~~q~~~~~~~~~~~G 194 (527)
++|.-|..-.|..+++.+.+.-. -+|+||.....+.-.+.+ +.+ ..... ..+.++.... ..|
T Consensus 6 iIp~~Ne~~~l~~~l~sl~~~~y~~~~~eiivVdd~s~d~t~~i~-~~~-~~~~~---~~i~~~~~~~---------~~G 71 (241)
T cd06427 6 LVPLYKEAEVLPQLIASLSALDYPRSKLDVKLLLEEDDEETIAAA-RAL-RLPSI---FRVVVVPPSQ---------PRT 71 (241)
T ss_pred EEecCCcHHHHHHHHHHHHhCcCCcccEEEEEEECCCCchHHHHH-HHh-ccCCC---eeEEEecCCC---------CCc
Confidence 45665554567788888776532 256666554433333333 333 11001 1133322211 137
Q ss_pred hHHHHHHHHHHHHhhhcCCCCeEEEEcCceeecCC-HHHHHHHHHHcCCcEEEEE
Q 009720 195 TADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVDRDADITISC 248 (527)
Q Consensus 195 ta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~d-l~~ll~~h~~~~ad~tv~~ 248 (527)
-+.|+..+.... ..+.++++.+|.....+ +..+++...+.+.++.+..
T Consensus 72 ~~~a~n~g~~~a------~gd~i~~~DaD~~~~~~~l~~~~~~~~~~~~~v~~~~ 120 (241)
T cd06427 72 KPKACNYALAFA------RGEYVVIYDAEDAPDPDQLKKAVAAFARLDDKLACVQ 120 (241)
T ss_pred hHHHHHHHHHhc------CCCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEe
Confidence 788888776543 35889999999998877 5788887765445555443
No 285
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=65.85 E-value=97 Score=28.08 Aligned_cols=101 Identities=10% Similarity=0.137 Sum_probs=58.9
Q ss_pred eeeCCcchhHHHHHHHHHHcCCC--EEEEEeccCchhHHHHHHHhhccCCcccCCCeEEEeccccCCCCCCCCcccChHH
Q 009720 120 VPVAGCYRLIDIPMSNCINSGIN--KIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTAD 197 (527)
Q Consensus 120 lpIgGk~pLId~~l~~l~~~Gi~--~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~~V~vl~~~q~~~~~~~~~~~Gta~ 197 (527)
+|.-+....|+.+|+.+.+.... +|+|+-+...+...+.+. .+... .+.+.. .+. .|.+.
T Consensus 4 i~~~n~~~~l~~~l~sl~~q~~~~~evivvDd~s~d~~~~~~~-~~~~~-------~~~~~~-~~~---------~g~~~ 65 (202)
T cd06433 4 TPTYNQAETLEETIDSVLSQTYPNIEYIVIDGGSTDGTVDIIK-KYEDK-------ITYWIS-EPD---------KGIYD 65 (202)
T ss_pred EeccchHHHHHHHHHHHHhCCCCCceEEEEeCCCCccHHHHHH-HhHhh-------cEEEEe-cCC---------cCHHH
Confidence 45555546788888888776444 666665444444444443 33111 123322 111 37888
Q ss_pred HHHHHHHHHHhhhcCCCCeEEEEcCceeecCC-HHHHHHHHHH-cCCcE
Q 009720 198 AVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVD-RDADI 244 (527)
Q Consensus 198 al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~d-l~~ll~~h~~-~~ad~ 244 (527)
++..++...+ .+.++++.+|..+..+ +..+++...+ .+.++
T Consensus 66 a~n~~~~~a~------~~~v~~ld~D~~~~~~~~~~~~~~~~~~~~~~~ 108 (202)
T cd06433 66 AMNKGIALAT------GDIIGFLNSDDTLLPGALLAVVAAFAEHPEVDV 108 (202)
T ss_pred HHHHHHHHcC------CCEEEEeCCCcccCchHHHHHHHHHHhCCCccE
Confidence 8887765543 5889999999887655 6777744433 34443
No 286
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=64.99 E-value=1.1e+02 Score=28.69 Aligned_cols=106 Identities=5% Similarity=0.046 Sum_probs=60.4
Q ss_pred ceeeCCcchhHHHHHHHHHHcCC----CEEEEEeccCchhHHHHHHHhhccCCcccCCCeEEEeccccCCCCCCCCcccC
Q 009720 119 AVPVAGCYRLIDIPMSNCINSGI----NKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQG 194 (527)
Q Consensus 119 LlpIgGk~pLId~~l~~l~~~Gi----~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~~V~vl~~~q~~~~~~~~~~~G 194 (527)
++|.-|....|..+|+.+...-. -+|+|+-....+...+.+. +... .....+.++...... ..|
T Consensus 2 iip~~n~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~--~~~~---~~~~~v~~~~~~~~~-------~~g 69 (229)
T cd04192 2 VIAARNEAENLPRLLQSLSALDYPKEKFEVILVDDHSTDGTVQILE--FAAA---KPNFQLKILNNSRVS-------ISG 69 (229)
T ss_pred EEEecCcHHHHHHHHHHHHhCCCCCCceEEEEEcCCCCcChHHHHH--HHHh---CCCcceEEeeccCcc-------cch
Confidence 46776665678888888766422 3566666544443334342 1101 111235555433211 136
Q ss_pred hHHHHHHHHHHHHhhhcCCCCeEEEEcCceeecCC-HHHHHHHHHHcCC
Q 009720 195 TADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVDRDA 242 (527)
Q Consensus 195 ta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~d-l~~ll~~h~~~~a 242 (527)
-+.++..+.... ..+.++++.+|.+...+ ++.+++.+.+.+.
T Consensus 70 ~~~a~n~g~~~~------~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~ 112 (229)
T cd04192 70 KKNALTTAIKAA------KGDWIVTTDADCVVPSNWLLTFVAFIQKEQI 112 (229)
T ss_pred hHHHHHHHHHHh------cCCEEEEECCCcccCHHHHHHHHHHhhcCCC
Confidence 666776665433 35889999999988776 5777776655444
No 287
>KOG2978 consensus Dolichol-phosphate mannosyltransferase [General function prediction only]
Probab=60.93 E-value=1.5e+02 Score=28.63 Aligned_cols=101 Identities=12% Similarity=0.118 Sum_probs=59.4
Q ss_pred hhHHHHHHHH-HHcCCCEEEEEeccC----chhHHHHHHHhhccCCcccCCCeEEEeccccCCCCCCCCcccChHHHHHH
Q 009720 127 RLIDIPMSNC-INSGINKIFVLTQFN----SASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQ 201 (527)
Q Consensus 127 pLId~~l~~l-~~~Gi~~I~Iv~~~~----~~~i~~hl~~~y~~~~~~~~~~~V~vl~~~q~~~~~~~~~~~Gta~al~~ 201 (527)
|++-|.+... ...|.+-=+|++... ..++.+.+++.|- ..+|-+.+-... +|.+.|...
T Consensus 19 pi~~~li~~~~~e~~~~~eiIivDD~SpDGt~~~a~~L~k~yg-------~d~i~l~pR~~k---------lGLgtAy~h 82 (238)
T KOG2978|consen 19 PIITRLIAKYMSEEGKKYEIIIVDDASPDGTQEVAKALQKIYG-------EDNILLKPRTKK---------LGLGTAYIH 82 (238)
T ss_pred eeeHHHHHhhhhhhcCceEEEEEeCCCCCccHHHHHHHHHHhC-------CCcEEEEeccCc---------ccchHHHHh
Confidence 3444555444 335766433444332 2356666665552 223554443322 577778877
Q ss_pred HHHHHHhhhcCCCCeEEEEcCceeecCC-HHHHHHHHHHcCCcEEEEEE
Q 009720 202 FTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVDRDADITISCA 249 (527)
Q Consensus 202 a~~~l~~~~~~~~e~~Lvl~gD~l~~~d-l~~ll~~h~~~~ad~tv~~~ 249 (527)
.+.+.+ .+.++++.+|.--... +.+|++...+.+.|++....
T Consensus 83 gl~~a~------g~fiviMDaDlsHhPk~ipe~i~lq~~~~~div~GTR 125 (238)
T KOG2978|consen 83 GLKHAT------GDFIVIMDADLSHHPKFIPEFIRLQKEGNYDIVLGTR 125 (238)
T ss_pred hhhhcc------CCeEEEEeCccCCCchhHHHHHHHhhccCcceeeeee
Confidence 766554 4677788889866544 58888887777778776653
No 288
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=60.58 E-value=1e+02 Score=27.91 Aligned_cols=106 Identities=11% Similarity=-0.018 Sum_probs=58.4
Q ss_pred eeeCCcchhHHHHHHHHHHc-----CCCEEEEEeccCchhHHHHHHHhhccCCcccCCCeEEEeccccCCCCCCCCcccC
Q 009720 120 VPVAGCYRLIDIPMSNCINS-----GINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQG 194 (527)
Q Consensus 120 lpIgGk~pLId~~l~~l~~~-----Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~~V~vl~~~q~~~~~~~~~~~G 194 (527)
+|.-+....|...++.+.+. ..-+|+|+-+...+...+.+ +.+... . ..+.++...+. .|
T Consensus 3 Ip~~n~~~~l~~~l~sl~~~~~~~~~~~eiivvdd~s~d~t~~~~-~~~~~~---~--~~i~~i~~~~n---------~G 67 (181)
T cd04187 3 VPVYNEEENLPELYERLKAVLESLGYDYEIIFVDDGSTDRTLEIL-RELAAR---D--PRVKVIRLSRN---------FG 67 (181)
T ss_pred EeecCchhhHHHHHHHHHHHHHhcCCCeEEEEEeCCCCccHHHHH-HHHHhh---C--CCEEEEEecCC---------CC
Confidence 45544423444555444322 22377777665444433333 333211 1 12555543332 38
Q ss_pred hHHHHHHHHHHHHhhhcCCCCeEEEEcCceeecCC-HHHHHHHHHHcCCcEEEE
Q 009720 195 TADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVDRDADITIS 247 (527)
Q Consensus 195 ta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~d-l~~ll~~h~~~~ad~tv~ 247 (527)
.+.++..++.... .+.++++.+|..+..+ +..+++. .+.+.++.+.
T Consensus 68 ~~~a~n~g~~~a~------~d~i~~~D~D~~~~~~~l~~l~~~-~~~~~~~v~g 114 (181)
T cd04187 68 QQAALLAGLDHAR------GDAVITMDADLQDPPELIPEMLAK-WEEGYDVVYG 114 (181)
T ss_pred cHHHHHHHHHhcC------CCEEEEEeCCCCCCHHHHHHHHHH-HhCCCcEEEE
Confidence 8888887765543 4889999999988766 5777776 4445554433
No 289
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=58.86 E-value=15 Score=43.56 Aligned_cols=29 Identities=17% Similarity=0.241 Sum_probs=19.6
Q ss_pred eEeCCCcE-EeeeEEcCCCEECCCcEEeCC
Q 009720 465 IGVGRNTK-IRNCIIDKNVKIGKDVVIVNK 493 (527)
Q Consensus 465 ~~Ig~~~~-I~~~iI~~~~~Ig~~~~i~~~ 493 (527)
+.+|+++. |+||.|+.+++||.+++|.+-
T Consensus 343 ~s~~~~s~~vE~s~l~~~~~ig~~~Iisgv 372 (974)
T PRK13412 343 LTAENATLWIENSHVGEGWKLASRSIITGV 372 (974)
T ss_pred cccCCCeEEEEeeEecCCeEEcCCcEEecc
Confidence 66666633 677777777777777777653
No 290
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=54.05 E-value=1.8e+02 Score=26.63 Aligned_cols=106 Identities=13% Similarity=0.110 Sum_probs=61.1
Q ss_pred ceeeCCcchhHHHHHHHHHHcCC----CEEEEEeccCchhHHHHHHHhhccCCcccCCCeEEEeccccCCCCCCCCcccC
Q 009720 119 AVPVAGCYRLIDIPMSNCINSGI----NKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQG 194 (527)
Q Consensus 119 LlpIgGk~pLId~~l~~l~~~Gi----~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~~V~vl~~~q~~~~~~~~~~~G 194 (527)
++|.-|....|..+++.+.+... -+|+|+.....+.-.+.+ +.+ +. .+........ .|
T Consensus 2 vIp~~ne~~~i~~~l~sl~~~~~p~~~~eiivvdd~s~D~t~~~~-~~~-------~~-~~~~~~~~~~---------~g 63 (183)
T cd06438 2 LIPAHNEEAVIGNTVRSLKAQDYPRELYRIFVVADNCTDDTAQVA-RAA-------GA-TVLERHDPER---------RG 63 (183)
T ss_pred EEeccchHHHHHHHHHHHHhcCCCCcccEEEEEeCCCCchHHHHH-HHc-------CC-eEEEeCCCCC---------CC
Confidence 46777765678888888876532 356666655444433333 222 11 1222111111 37
Q ss_pred hHHHHHHHHHHHHhhhcCCCCeEEEEcCceeecCCH-HHHHHHHHHcCCcE
Q 009720 195 TADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDY-MDFIQSHVDRDADI 244 (527)
Q Consensus 195 ta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~dl-~~ll~~h~~~~ad~ 244 (527)
-+.++..+...... .....+.++++.+|.....++ ..+++.+. .+.++
T Consensus 64 k~~aln~g~~~a~~-~~~~~d~v~~~DaD~~~~p~~l~~l~~~~~-~~~~~ 112 (183)
T cd06438 64 KGYALDFGFRHLLN-LADDPDAVVVFDADNLVDPNALEELNARFA-AGARV 112 (183)
T ss_pred HHHHHHHHHHHHHh-cCCCCCEEEEEcCCCCCChhHHHHHHHHHh-hCCCe
Confidence 88888877765520 012357899999999998774 66666654 35554
No 291
>PRK10018 putative glycosyl transferase; Provisional
Probab=53.93 E-value=2.4e+02 Score=28.49 Aligned_cols=97 Identities=9% Similarity=0.150 Sum_probs=56.8
Q ss_pred eeeCCcchhHHHHHHHHHHcCCC--EEEEEeccCc--hhHHHHHHHhhccCCcccCCCeEEEeccccCCCCCCCCcccCh
Q 009720 120 VPVAGCYRLIDIPMSNCINSGIN--KIFVLTQFNS--ASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGT 195 (527)
Q Consensus 120 lpIgGk~pLId~~l~~l~~~Gi~--~I~Iv~~~~~--~~i~~hl~~~y~~~~~~~~~~~V~vl~~~q~~~~~~~~~~~Gt 195 (527)
+|.-+....|..+|+.+.+.-.. +|+|+-.... +.+.+++ +.+ .+..+.++...+. .|.
T Consensus 11 ip~yN~~~~l~~~l~Svl~Qt~~~~EiIVVDDgS~~~~~~~~~~-~~~-------~~~ri~~i~~~~n---------~G~ 73 (279)
T PRK10018 11 MPTWNRQQLAIRAIKSVLRQDYSNWEMIIVDDCSTSWEQLQQYV-TAL-------NDPRITYIHNDIN---------SGA 73 (279)
T ss_pred EEeCCCHHHHHHHHHHHHhCCCCCeEEEEEECCCCCHHHHHHHH-HHc-------CCCCEEEEECCCC---------CCH
Confidence 45555546677888887765433 5555543222 1222222 221 1223666654332 488
Q ss_pred HHHHHHHHHHHHhhhcCCCCeEEEEcCceeecCC-HHHHHHHHHH
Q 009720 196 ADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVD 239 (527)
Q Consensus 196 a~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~d-l~~ll~~h~~ 239 (527)
+.|...++... ..+.++++.+|.++..+ +..+++...+
T Consensus 74 ~~a~N~gi~~a------~g~~I~~lDaDD~~~p~~l~~~~~~~~~ 112 (279)
T PRK10018 74 CAVRNQAIMLA------QGEYITGIDDDDEWTPNRLSVFLAHKQQ 112 (279)
T ss_pred HHHHHHHHHHc------CCCEEEEECCCCCCCccHHHHHHHHHHh
Confidence 88877766543 35899999999988776 6777775543
No 292
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=52.26 E-value=1.6e+02 Score=31.84 Aligned_cols=100 Identities=13% Similarity=0.088 Sum_probs=58.6
Q ss_pred ceeeCCcchhHHHHHHHHHHcCC--CEEEEEeccCchhHHHHHHHhhccCCcccCCCeEEEeccccCCCCCCCCcccChH
Q 009720 119 AVPVAGCYRLIDIPMSNCINSGI--NKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTA 196 (527)
Q Consensus 119 LlpIgGk~pLId~~l~~l~~~Gi--~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~~V~vl~~~q~~~~~~~~~~~Gta 196 (527)
++|.-|...-|..+++.+.+..- -+|+|+.....+...+.+. ++... . ..+.++...+. +|-+
T Consensus 80 iIP~yNE~~~i~~~l~sll~q~yp~~eIivVdDgs~D~t~~~~~-~~~~~---~--~~v~vv~~~~n---------~Gka 144 (444)
T PRK14583 80 LVPCFNEGLNARETIHAALAQTYTNIEVIAINDGSSDDTAQVLD-ALLAE---D--PRLRVIHLAHN---------QGKA 144 (444)
T ss_pred EEEeCCCHHHHHHHHHHHHcCCCCCeEEEEEECCCCccHHHHHH-HHHHh---C--CCEEEEEeCCC---------CCHH
Confidence 45555554556777777766532 3677776544443333332 22111 1 12555543332 4778
Q ss_pred HHHHHHHHHHHhhhcCCCCeEEEEcCceeecCC-HHHHHHHHHH
Q 009720 197 DAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVD 239 (527)
Q Consensus 197 ~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~d-l~~ll~~h~~ 239 (527)
.++..+...- ..|.++++.+|.+.+.| +..+++.+.+
T Consensus 145 ~AlN~gl~~a------~~d~iv~lDAD~~~~~d~L~~lv~~~~~ 182 (444)
T PRK14583 145 IALRMGAAAA------RSEYLVCIDGDALLDKNAVPYLVAPLIA 182 (444)
T ss_pred HHHHHHHHhC------CCCEEEEECCCCCcCHHHHHHHHHHHHh
Confidence 8887776443 35899999999999877 5677765543
No 293
>PRK11204 N-glycosyltransferase; Provisional
Probab=51.92 E-value=1.8e+02 Score=30.79 Aligned_cols=92 Identities=13% Similarity=0.156 Sum_probs=54.5
Q ss_pred hhHHHHHHHHHHcCC--CEEEEEeccCchhHHHHHHHhhccCCcccCCCeEEEeccccCCCCCCCCcccChHHHHHHHHH
Q 009720 127 RLIDIPMSNCINSGI--NKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTW 204 (527)
Q Consensus 127 pLId~~l~~l~~~Gi--~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~ 204 (527)
..|..+++.+.+... -+|+|+-....+...+.+ +++... + ..++++...+. .|-++++..+..
T Consensus 67 ~~i~~~l~sl~~q~yp~~eiiVvdD~s~d~t~~~l-~~~~~~---~--~~v~~i~~~~n---------~Gka~aln~g~~ 131 (420)
T PRK11204 67 ENVEETISHLLALRYPNYEVIAINDGSSDNTGEIL-DRLAAQ---I--PRLRVIHLAEN---------QGKANALNTGAA 131 (420)
T ss_pred HHHHHHHHHHHhCCCCCeEEEEEECCCCccHHHHH-HHHHHh---C--CcEEEEEcCCC---------CCHHHHHHHHHH
Confidence 456677777766532 367666654444333333 222111 1 12555542222 377888887765
Q ss_pred HHHhhhcCCCCeEEEEcCceeecCC-HHHHHHHHHH
Q 009720 205 VFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVD 239 (527)
Q Consensus 205 ~l~~~~~~~~e~~Lvl~gD~l~~~d-l~~ll~~h~~ 239 (527)
.. ..+.++++.+|.+...| +..+++...+
T Consensus 132 ~a------~~d~i~~lDaD~~~~~d~L~~l~~~~~~ 161 (420)
T PRK11204 132 AA------RSEYLVCIDGDALLDPDAAAYMVEHFLH 161 (420)
T ss_pred Hc------CCCEEEEECCCCCCChhHHHHHHHHHHh
Confidence 43 35899999999988877 5777776644
No 294
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=51.56 E-value=2.5e+02 Score=29.60 Aligned_cols=114 Identities=12% Similarity=0.149 Sum_probs=61.9
Q ss_pred eeCCcchhHHHHHHHHHHcCC---CEEEEEeccCchhHHHHHHHhhccCCcccC-CCeEEEeccccCCCCCCCCcccChH
Q 009720 121 PVAGCYRLIDIPMSNCINSGI---NKIFVLTQFNSASLNRHIARTYFGNGTNFG-DGFVEVLAATQTPGESGKNWFQGTA 196 (527)
Q Consensus 121 pIgGk~pLId~~l~~l~~~Gi---~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~-~~~V~vl~~~q~~~~~~~~~~~Gta 196 (527)
|.-|....|..+++.+.+... -+|+|+-+...+.-.+.+ +++... +. ...+.++.....+ ..| .|-+
T Consensus 47 pa~Ne~~~L~~~L~sL~~q~yp~~~eIIVVDd~StD~T~~i~-~~~~~~---~~~~~~i~vi~~~~~~----~g~-~Gk~ 117 (384)
T TIGR03469 47 PARNEADVIGECVTSLLEQDYPGKLHVILVDDHSTDGTADIA-RAAARA---YGRGDRLTVVSGQPLP----PGW-SGKL 117 (384)
T ss_pred ecCCcHhHHHHHHHHHHhCCCCCceEEEEEeCCCCCcHHHHH-HHHHHh---cCCCCcEEEecCCCCC----CCC-cchH
Confidence 334443667777777766532 367776655443322222 222110 11 1136666532211 122 4666
Q ss_pred HHHHHHHHHHHhhhcCCCCeEEEEcCceeecCC-HHHHHHHHHHcCCcE
Q 009720 197 DAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVDRDADI 244 (527)
Q Consensus 197 ~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~d-l~~ll~~h~~~~ad~ 244 (527)
.|+.++.....+. ....+.++++.+|.....+ +..+++...+.+.++
T Consensus 118 ~A~n~g~~~A~~~-~~~gd~llflDaD~~~~p~~l~~lv~~~~~~~~~~ 165 (384)
T TIGR03469 118 WAVSQGIAAARTL-APPADYLLLTDADIAHGPDNLARLVARARAEGLDL 165 (384)
T ss_pred HHHHHHHHHHhcc-CCCCCEEEEECCCCCCChhHHHHHHHHHHhCCCCE
Confidence 7777776554311 0115789999999988776 588888776666554
No 295
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=51.37 E-value=73 Score=30.14 Aligned_cols=105 Identities=15% Similarity=0.168 Sum_probs=53.1
Q ss_pred ceeeCCcchhHHHHHHHHHHc--CCCEEEEEeccCchhH---HHHHHHhhccCCcccCCCeEEEeccccCCCCCCCCccc
Q 009720 119 AVPVAGCYRLIDIPMSNCINS--GINKIFVLTQFNSASL---NRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQ 193 (527)
Q Consensus 119 LlpIgGk~pLId~~l~~l~~~--Gi~~I~Iv~~~~~~~i---~~hl~~~y~~~~~~~~~~~V~vl~~~q~~~~~~~~~~~ 193 (527)
++|..+..+.|..+|+.+... .--+|+|+.....++. .+.+.+.+ +...+.++......+ ..
T Consensus 6 vip~~~~~~~l~~~l~sl~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~-------~~~~v~vi~~~~~~g------~~ 72 (228)
T PF13641_consen 6 VIPAYNEDDVLRRCLESLLAQDYPRLEVVVVDDGSDDETAEILRALAARY-------PRVRVRVIRRPRNPG------PG 72 (228)
T ss_dssp E--BSS-HHHHHHHHHHHTTSHHHTEEEEEEEE-SSS-GCTTHHHHHHTT-------GG-GEEEEE----HH------HH
T ss_pred EEEecCCHHHHHHHHHHHHcCCCCCeEEEEEECCCChHHHHHHHHHHHHc-------CCCceEEeecCCCCC------cc
Confidence 466666656788888887764 2246666665444333 22232222 212366665443210 01
Q ss_pred ChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeecCC-HHHHHHHHHHcCC
Q 009720 194 GTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVDRDA 242 (527)
Q Consensus 194 Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~d-l~~ll~~h~~~~a 242 (527)
+.+.++..++...+ .+.++++..|.+...+ +..+++.+.+.+.
T Consensus 73 ~k~~a~n~~~~~~~------~d~i~~lD~D~~~~p~~l~~~~~~~~~~~~ 116 (228)
T PF13641_consen 73 GKARALNEALAAAR------GDYILFLDDDTVLDPDWLERLLAAFADPGV 116 (228)
T ss_dssp HHHHHHHHHHHH---------SEEEEE-SSEEE-CHHHHHHHHHHHBSS-
T ss_pred hHHHHHHHHHHhcC------CCEEEEECCCcEECHHHHHHHHHHHHhCCC
Confidence 35667777766553 5899999999999777 5777776633343
No 296
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=50.86 E-value=1.6e+02 Score=28.01 Aligned_cols=102 Identities=13% Similarity=0.127 Sum_probs=57.4
Q ss_pred ceeeCCcc-hhHHHHHHHHHHcCC--CEEEEEeccCchh-HHHHHHHhhccCCcccCCCeEEEeccccCCCCCCCCcccC
Q 009720 119 AVPVAGCY-RLIDIPMSNCINSGI--NKIFVLTQFNSAS-LNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQG 194 (527)
Q Consensus 119 LlpIgGk~-pLId~~l~~l~~~Gi--~~I~Iv~~~~~~~-i~~hl~~~y~~~~~~~~~~~V~vl~~~q~~~~~~~~~~~G 194 (527)
++|.-+.. .+|...++.+.+... -+|+|+-+...+. ..+.+ +.+.. +++ ..+.++...+.. |
T Consensus 3 iip~~ne~~~~l~~~l~sl~~q~~~~~eiiVvdd~s~D~t~~~~i-~~~~~---~~~-~~i~~i~~~~~~---------G 68 (236)
T cd06435 3 HVPCYEEPPEMVKETLDSLAALDYPNFEVIVIDNNTKDEALWKPV-EAHCA---QLG-ERFRFFHVEPLP---------G 68 (236)
T ss_pred eEeeCCCcHHHHHHHHHHHHhCCCCCcEEEEEeCCCCchhHHHHH-HHHHH---HhC-CcEEEEEcCCCC---------C
Confidence 46777763 378888888887643 3666666543322 21222 11110 011 124444433222 4
Q ss_pred -hHHHHHHHHHHHHhhhcCCCCeEEEEcCceeecCC-HHHHHHHHH
Q 009720 195 -TADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHV 238 (527)
Q Consensus 195 -ta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~d-l~~ll~~h~ 238 (527)
-++++..+..... ...+.++++..|.+...+ +..+++...
T Consensus 69 ~~~~a~n~g~~~a~----~~~d~i~~lD~D~~~~~~~l~~l~~~~~ 110 (236)
T cd06435 69 AKAGALNYALERTA----PDAEIIAVIDADYQVEPDWLKRLVPIFD 110 (236)
T ss_pred CchHHHHHHHHhcC----CCCCEEEEEcCCCCcCHHHHHHHHHHhc
Confidence 3677777765542 125789999999988777 577777653
No 297
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=46.43 E-value=2.8e+02 Score=29.84 Aligned_cols=99 Identities=11% Similarity=0.069 Sum_probs=56.2
Q ss_pred eeeCCcchhHHHHHHHHHHcCC--C--EEEEEeccCchhHHHHHHHhhccCCcccCCCeEEEeccccCCCCCCCCcccCh
Q 009720 120 VPVAGCYRLIDIPMSNCINSGI--N--KIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGT 195 (527)
Q Consensus 120 lpIgGk~pLId~~l~~l~~~Gi--~--~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~~V~vl~~~q~~~~~~~~~~~Gt 195 (527)
+|.-|....|..+++.+.+... + +|+|+-+...+.-.+.+. ++.. .+. .+.+...... .|-
T Consensus 55 IP~yNe~~~l~~~l~sl~~q~yp~~~~eIiVVDd~StD~T~~il~-~~~~---~~~--~v~v~~~~~~---------~Gk 119 (439)
T TIGR03111 55 IPVYNSEDTLFNCIESIYNQTYPIELIDIILANNQSTDDSFQVFC-RAQN---EFP--GLSLRYMNSD---------QGK 119 (439)
T ss_pred EEeCCChHHHHHHHHHHHhcCCCCCCeEEEEEECCCChhHHHHHH-HHHH---hCC--CeEEEEeCCC---------CCH
Confidence 3444444677778888776543 2 465655443333322222 1111 111 1333322222 378
Q ss_pred HHHHHHHHHHHHhhhcCCCCeEEEEcCceeecCC-HHHHHHHHHH
Q 009720 196 ADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVD 239 (527)
Q Consensus 196 a~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~d-l~~ll~~h~~ 239 (527)
+.|+..+.... ..+.++++.+|.+.+.| +..+++...+
T Consensus 120 a~AlN~gl~~s------~g~~v~~~DaD~~~~~d~L~~l~~~f~~ 158 (439)
T TIGR03111 120 AKALNAAIYNS------IGKYIIHIDSDGKLHKDAIKNMVTRFEN 158 (439)
T ss_pred HHHHHHHHHHc------cCCEEEEECCCCCcChHHHHHHHHHHHh
Confidence 88888877554 35789999999998877 5777776653
No 298
>PF04519 Bactofilin: Polymer-forming cytoskeletal; InterPro: IPR007607 This family contains several uncharacterised hypothetical proteins.
Probab=46.13 E-value=63 Score=27.12 Aligned_cols=10 Identities=30% Similarity=0.521 Sum_probs=4.2
Q ss_pred eEECCCCEEc
Q 009720 407 AIISHGCFLR 416 (527)
Q Consensus 407 s~I~~g~~I~ 416 (527)
++|++++.+.
T Consensus 3 ~~I~~~~~i~ 12 (101)
T PF04519_consen 3 TIIGKGTKIE 12 (101)
T ss_pred EEECCCCEEE
Confidence 3344444443
No 299
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=44.88 E-value=2.6e+02 Score=25.88 Aligned_cols=103 Identities=10% Similarity=0.044 Sum_probs=52.3
Q ss_pred ceeeCCcchhHHHHHHHHHHcC--CCEEEEEeccCchhHHHHHHHhhccCCcccCCCeEEEeccccCCCCCCCCcccChH
Q 009720 119 AVPVAGCYRLIDIPMSNCINSG--INKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTA 196 (527)
Q Consensus 119 LlpIgGk~pLId~~l~~l~~~G--i~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~~V~vl~~~q~~~~~~~~~~~Gta 196 (527)
++|+-|..+.|...|+.+.+.- --+|+||.....+.-.+.+ +.+.. .+....+.++......+ ..+-+
T Consensus 6 iip~~n~~~~l~~~L~sl~~q~~~~~eiivVdd~s~d~t~~~~-~~~~~---~~~~~~~~~~~~~~~~g------~~~~~ 75 (196)
T cd02520 6 LKPLCGVDPNLYENLESFFQQDYPKYEILFCVQDEDDPAIPVV-RKLIA---KYPNVDARLLIGGEKVG------INPKV 75 (196)
T ss_pred EEecCCCCccHHHHHHHHHhccCCCeEEEEEeCCCcchHHHHH-HHHHH---HCCCCcEEEEecCCcCC------CCHhH
Confidence 4566555456777788876642 2467666654443322323 22211 11111244444333211 01223
Q ss_pred HHHHHHHHHHHhhhcCCCCeEEEEcCceeecCC-HHHHHHHH
Q 009720 197 DAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSH 237 (527)
Q Consensus 197 ~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~d-l~~ll~~h 237 (527)
.++..+.... ..+.++++.+|.....+ +..+++..
T Consensus 76 ~~~n~g~~~a------~~d~i~~~D~D~~~~~~~l~~l~~~~ 111 (196)
T cd02520 76 NNLIKGYEEA------RYDILVISDSDISVPPDYLRRMVAPL 111 (196)
T ss_pred HHHHHHHHhC------CCCEEEEECCCceEChhHHHHHHHHh
Confidence 3444443322 35889999999988776 46666653
No 300
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=44.35 E-value=2.6e+02 Score=25.73 Aligned_cols=100 Identities=9% Similarity=0.013 Sum_probs=58.1
Q ss_pred eeeCCcchhHHHHHHHHHHcCC--CEEEEEeccCchhHHHHHHHhhccCCcccCCCeEEEeccccCCCCCCCCcccChHH
Q 009720 120 VPVAGCYRLIDIPMSNCINSGI--NKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTAD 197 (527)
Q Consensus 120 lpIgGk~pLId~~l~~l~~~Gi--~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~~V~vl~~~q~~~~~~~~~~~Gta~ 197 (527)
+|.-++...|..+|+.+.+.-. .+|+|+-+...+...+.+. .+.. ... +.++..... .|.+.
T Consensus 3 I~~~n~~~~l~~~l~sl~~q~~~~~eiiivD~~s~d~t~~~~~-~~~~---~~~---i~~~~~~~n---------~g~~~ 66 (202)
T cd04185 3 VVTYNRLDLLKECLDALLAQTRPPDHIIVIDNASTDGTAEWLT-SLGD---LDN---IVYLRLPEN---------LGGAG 66 (202)
T ss_pred EEeeCCHHHHHHHHHHHHhccCCCceEEEEECCCCcchHHHHH-HhcC---CCc---eEEEECccc---------cchhh
Confidence 4555544678888888877532 4676666554445544443 2211 111 445443322 36777
Q ss_pred HHHHHHHHHHhhhcCCCCeEEEEcCceeecCCH-HHHHHHHH
Q 009720 198 AVRQFTWVFEDAKNRNIENVAILCGDHLYRMDY-MDFIQSHV 238 (527)
Q Consensus 198 al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~dl-~~ll~~h~ 238 (527)
++..++.... ....+.++++..|.+...++ ..+++...
T Consensus 67 ~~n~~~~~a~---~~~~d~v~~ld~D~~~~~~~l~~l~~~~~ 105 (202)
T cd04185 67 GFYEGVRRAY---ELGYDWIWLMDDDAIPDPDALEKLLAYAD 105 (202)
T ss_pred HHHHHHHHHh---ccCCCEEEEeCCCCCcChHHHHHHHHHHh
Confidence 7766655442 12457899999999988774 66665544
No 301
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=42.00 E-value=2.6e+02 Score=29.31 Aligned_cols=105 Identities=11% Similarity=0.095 Sum_probs=54.7
Q ss_pred ceeeCCcchhHHHHHHHHHHcCC--CEEEEEeccCchhHHHHHHHhhccCCcccCCCeEEEeccccCCCCCCCCcccChH
Q 009720 119 AVPVAGCYRLIDIPMSNCINSGI--NKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTA 196 (527)
Q Consensus 119 LlpIgGk~pLId~~l~~l~~~Gi--~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~~V~vl~~~q~~~~~~~~~~~Gta 196 (527)
++|+-|..+.|..+++.+.+..- -+|+++.....+.-.+.+ +++.. ++.+..++++...+..+ | .+-.
T Consensus 46 iiP~~nee~~l~~~L~Sl~~q~Yp~~EIivvdd~s~D~t~~iv-~~~~~---~~p~~~i~~v~~~~~~G-----~-~~K~ 115 (373)
T TIGR03472 46 LKPLHGDEPELYENLASFCRQDYPGFQMLFGVQDPDDPALAVV-RRLRA---DFPDADIDLVIDARRHG-----P-NRKV 115 (373)
T ss_pred EEECCCCChhHHHHHHHHHhcCCCCeEEEEEeCCCCCcHHHHH-HHHHH---hCCCCceEEEECCCCCC-----C-ChHH
Confidence 45666655677788887766542 367665544333212222 22211 12222355554333221 1 1233
Q ss_pred HHHHHHHHHHHhhhcCCCCeEEEEcCceeecCCH-HHHHHHHHH
Q 009720 197 DAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDY-MDFIQSHVD 239 (527)
Q Consensus 197 ~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~dl-~~ll~~h~~ 239 (527)
.++.++. +. ...|-++++.+|.....++ +.+++...+
T Consensus 116 ~~l~~~~---~~---a~ge~i~~~DaD~~~~p~~L~~lv~~~~~ 153 (373)
T TIGR03472 116 SNLINML---PH---ARHDILVIADSDISVGPDYLRQVVAPLAD 153 (373)
T ss_pred HHHHHHH---Hh---ccCCEEEEECCCCCcChhHHHHHHHHhcC
Confidence 4444433 21 2358899999999888774 666665543
No 302
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=41.88 E-value=3e+02 Score=26.30 Aligned_cols=91 Identities=12% Similarity=0.073 Sum_probs=54.1
Q ss_pred ceeeCCcchhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCcccCCCeEEEeccccCCCCCCCCcccChHHH
Q 009720 119 AVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADA 198 (527)
Q Consensus 119 LlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~~V~vl~~~q~~~~~~~~~~~Gta~a 198 (527)
++|.-+....|..+|+.+... .++|+|+-+...+...+.+ +.+ + +.++.. . ..|-+.+
T Consensus 5 ii~~~Ne~~~l~~~l~sl~~~-~~eiivvD~gStD~t~~i~-~~~-------~---~~v~~~-~---------~~g~~~~ 62 (229)
T cd02511 5 VIITKNEERNIERCLESVKWA-VDEIIVVDSGSTDRTVEIA-KEY-------G---AKVYQR-W---------WDGFGAQ 62 (229)
T ss_pred EEEeCCcHHHHHHHHHHHhcc-cCEEEEEeCCCCccHHHHH-HHc-------C---CEEEEC-C---------CCChHHH
Confidence 455555546677777777544 3688877765444433333 322 2 344432 1 1477777
Q ss_pred HHHHHHHHHhhhcCCCCeEEEEcCceeecCCH-HHHHHHH
Q 009720 199 VRQFTWVFEDAKNRNIENVAILCGDHLYRMDY-MDFIQSH 237 (527)
Q Consensus 199 l~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~dl-~~ll~~h 237 (527)
...++.... .+.++++.+|.+...++ ..+++..
T Consensus 63 ~n~~~~~a~------~d~vl~lDaD~~~~~~~~~~l~~~~ 96 (229)
T cd02511 63 RNFALELAT------NDWVLSLDADERLTPELADEILALL 96 (229)
T ss_pred HHHHHHhCC------CCEEEEEeCCcCcCHHHHHHHHHHH
Confidence 766665442 47899999999887775 4444443
No 303
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=40.42 E-value=3.5e+02 Score=28.00 Aligned_cols=50 Identities=14% Similarity=0.146 Sum_probs=33.4
Q ss_pred cChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeecCC-HHHHHHHHH---HcCCcEEEEE
Q 009720 193 QGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHV---DRDADITISC 248 (527)
Q Consensus 193 ~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~d-l~~ll~~h~---~~~ad~tv~~ 248 (527)
.|-+.|+..++..- ..+.++++.+|.-.+.+ +..+++... +.+.++.+..
T Consensus 148 ~G~~~A~~~Gi~~a------~gd~I~~~DaD~~~~~~~l~~l~~~l~~~~~~~~dvV~Gs 201 (333)
T PTZ00260 148 KGKGGAVRIGMLAS------RGKYILMVDADGATDIDDFDKLEDIMLKIEQNGLGIVFGS 201 (333)
T ss_pred CChHHHHHHHHHHc------cCCEEEEEeCCCCCCHHHHHHHHHHHHHhhccCCceEEee
Confidence 48889998876543 25789999999877654 566666544 3455554443
No 304
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=39.51 E-value=2.7e+02 Score=24.90 Aligned_cols=100 Identities=10% Similarity=0.077 Sum_probs=54.9
Q ss_pred ceeeCCcchhHHHHHHHHHHc--CCCEEEEEeccCchhHHHHHHHhhccCCcccCCCeEEEeccccCCCCCCCCcccChH
Q 009720 119 AVPVAGCYRLIDIPMSNCINS--GINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTA 196 (527)
Q Consensus 119 LlpIgGk~pLId~~l~~l~~~--Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~~V~vl~~~q~~~~~~~~~~~Gta 196 (527)
++|.-+....+..+|+.+.+. ...+|+|+-....+...+.+ +.+... .....+.+....+. .|.+
T Consensus 2 vip~~n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~t~~~~-~~~~~~---~~~~~~~~~~~~~~---------~~~~ 68 (182)
T cd06420 2 IITTYNRPEALELVLKSVLNQSILPFEVIIADDGSTEETKELI-EEFKSQ---FPIPIKHVWQEDEG---------FRKA 68 (182)
T ss_pred EEeecCChHHHHHHHHHHHhccCCCCEEEEEeCCCchhHHHHH-HHHHhh---cCCceEEEEcCCcc---------hhHH
Confidence 356666546788888888764 23477776655444433333 233111 11111222222111 2455
Q ss_pred HHHHHHHHHHHhhhcCCCCeEEEEcCceeecCC-HHHHHHHH
Q 009720 197 DAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSH 237 (527)
Q Consensus 197 ~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~d-l~~ll~~h 237 (527)
.++..+.... ..+.++++.+|.+...+ +..+++.+
T Consensus 69 ~~~n~g~~~a------~g~~i~~lD~D~~~~~~~l~~~~~~~ 104 (182)
T cd06420 69 KIRNKAIAAA------KGDYLIFIDGDCIPHPDFIADHIELA 104 (182)
T ss_pred HHHHHHHHHh------cCCEEEEEcCCcccCHHHHHHHHHHh
Confidence 6665555443 35889999999988766 46666654
No 305
>PRK00923 sirohydrochlorin cobaltochelatase; Reviewed
Probab=37.99 E-value=55 Score=28.63 Aligned_cols=25 Identities=24% Similarity=0.324 Sum_probs=21.3
Q ss_pred CcchhHHHHHHHHHHcCCCEEEEEec
Q 009720 124 GCYRLIDIPMSNCINSGINKIFVLTQ 149 (527)
Q Consensus 124 Gk~pLId~~l~~l~~~Gi~~I~Iv~~ 149 (527)
+. |-++..++.|.+.|.++|+|+--
T Consensus 44 ~~-P~l~~~l~~l~~~g~~~v~vvPl 68 (126)
T PRK00923 44 NE-PTIPEALKKLIGTGADKIIVVPV 68 (126)
T ss_pred CC-CCHHHHHHHHHHcCCCEEEEEch
Confidence 55 89999999999999999988653
No 306
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=37.74 E-value=3.5e+02 Score=25.33 Aligned_cols=100 Identities=14% Similarity=0.109 Sum_probs=57.0
Q ss_pred ceeeCCcc-hhHHHHHHHHHHcCCC----EEEEEeccCchhHHHHHHHhhccCCcccCCCeEEEeccccCCCCCCCCccc
Q 009720 119 AVPVAGCY-RLIDIPMSNCINSGIN----KIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQ 193 (527)
Q Consensus 119 LlpIgGk~-pLId~~l~~l~~~Gi~----~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~~V~vl~~~q~~~~~~~~~~~ 193 (527)
.+|.-|.. .++...++.+.+.... +|+|+-+...+...+.+ +.+.. .. .+.++...... .
T Consensus 6 iip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~-~~~~~---~~---~~~~~~~~~~~--------~ 70 (234)
T cd06421 6 FIPTYNEPLEIVRKTLRAALAIDYPHDKLRVYVLDDGRRPELRALA-AELGV---EY---GYRYLTRPDNR--------H 70 (234)
T ss_pred EEecCCCcHHHHHHHHHHHHhcCCCcccEEEEEEcCCCchhHHHHH-HHhhc---cc---CceEEEeCCCC--------C
Confidence 35666642 3678888888775432 67777665555554444 33311 11 13333322221 1
Q ss_pred ChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeecCC-HHHHHHHHHH
Q 009720 194 GTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVD 239 (527)
Q Consensus 194 Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~d-l~~ll~~h~~ 239 (527)
+-+.++..+.... ..+.++++.+|.+.+.+ +..+++...+
T Consensus 71 ~~~~~~n~~~~~a------~~d~i~~lD~D~~~~~~~l~~l~~~~~~ 111 (234)
T cd06421 71 AKAGNLNNALAHT------TGDFVAILDADHVPTPDFLRRTLGYFLD 111 (234)
T ss_pred CcHHHHHHHHHhC------CCCEEEEEccccCcCccHHHHHHHHHhc
Confidence 3455666655433 35889999999988877 4666665544
No 307
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=37.73 E-value=3.4e+02 Score=25.19 Aligned_cols=95 Identities=12% Similarity=0.025 Sum_probs=54.2
Q ss_pred ceeeCCcchhHHHHHHHHHHcC--CCEEEEEeccCchhHHHHHHHhhccCCcccCCCeEEEeccccCCCCCCCCcccChH
Q 009720 119 AVPVAGCYRLIDIPMSNCINSG--INKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTA 196 (527)
Q Consensus 119 LlpIgGk~pLId~~l~~l~~~G--i~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~~V~vl~~~q~~~~~~~~~~~Gta 196 (527)
++|+-+..+.|...|+.+.+.- -.+|+|+-+...+...+.+.+ . .+.++... .|-+
T Consensus 4 ii~~~n~~~~l~~~l~sl~~q~~~~~evivvdd~s~d~~~~~~~~--------~---~~~~~~~~-----------~g~~ 61 (221)
T cd02522 4 IIPTLNEAENLPRLLASLRRLNPLPLEIIVVDGGSTDGTVAIARS--------A---GVVVISSP-----------KGRA 61 (221)
T ss_pred EEEccCcHHHHHHHHHHHHhccCCCcEEEEEeCCCCccHHHHHhc--------C---CeEEEeCC-----------cCHH
Confidence 4566666467888888876653 246666654433434344421 1 13333321 2666
Q ss_pred HHHHHHHHHHHhhhcCCCCeEEEEcCceeecCCH-HHHHHHHHHcC
Q 009720 197 DAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDY-MDFIQSHVDRD 241 (527)
Q Consensus 197 ~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~dl-~~ll~~h~~~~ 241 (527)
.+...+..... .+.++++..|..+..++ ..++....+.+
T Consensus 62 ~a~n~g~~~a~------~~~i~~~D~D~~~~~~~l~~l~~~~~~~~ 101 (221)
T cd02522 62 RQMNAGAAAAR------GDWLLFLHADTRLPPDWDAAIIETLRADG 101 (221)
T ss_pred HHHHHHHHhcc------CCEEEEEcCCCCCChhHHHHHHHHhhcCC
Confidence 66666654432 58899999999887664 55555444333
No 308
>COG1664 CcmA Integral membrane protein CcmA involved in cell shape determination [Cell envelope biogenesis, outer membrane]
Probab=35.88 E-value=2e+02 Score=26.30 Aligned_cols=29 Identities=7% Similarity=0.193 Sum_probs=18.5
Q ss_pred eEeCCCcEEeeeEEcCCCEECCCcEEeCC
Q 009720 465 IGVGRNTKIRNCIIDKNVKIGKDVVIVNK 493 (527)
Q Consensus 465 ~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~ 493 (527)
+.|...+++..-|=.+...|.+++++.+.
T Consensus 91 Vei~~~g~v~GdI~~~~i~v~~Ga~f~G~ 119 (146)
T COG1664 91 VELYPGGRVIGDITTKEITVEEGAIFEGD 119 (146)
T ss_pred EEEcCCcEEeeeecccEEEEccCCEEEeE
Confidence 66666666666666666666666666554
No 309
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=34.79 E-value=3.7e+02 Score=31.92 Aligned_cols=103 Identities=15% Similarity=0.171 Sum_probs=60.2
Q ss_pred ceeeCCcch--hHHHHHHHHHHcCC--C--EEEEEeccCchhHHHHHHHhhccCCcccCCCeEEEeccccCCCCCCCCcc
Q 009720 119 AVPVAGCYR--LIDIPMSNCINSGI--N--KIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWF 192 (527)
Q Consensus 119 LlpIgGk~p--LId~~l~~l~~~Gi--~--~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~~V~vl~~~q~~~~~~~~~~ 192 (527)
++|.-|. + ++..++..+.+..- + +|+|+-....++..+... + .+ +.++......
T Consensus 265 iIPtYNE-~~~vv~~tI~a~l~~dYP~~k~EViVVDDgS~D~t~~la~-~-------~~---v~yI~R~~n~-------- 324 (852)
T PRK11498 265 FVPTYNE-DLNVVKNTIYASLGIDWPKDKLNIWILDDGGREEFRQFAQ-E-------VG---VKYIARPTHE-------- 324 (852)
T ss_pred EEecCCC-cHHHHHHHHHHHHhccCCCCceEEEEEeCCCChHHHHHHH-H-------CC---cEEEEeCCCC--------
Confidence 4566676 4 56677777765422 2 576666555555544432 2 12 4554322211
Q ss_pred cChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeecCCH-HHHHHHHHHcCCcEEEEE
Q 009720 193 QGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDY-MDFIQSHVDRDADITISC 248 (527)
Q Consensus 193 ~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~dl-~~ll~~h~~~~ad~tv~~ 248 (527)
.|-++++..++... ..|.++++.+|++...|+ ..++..+.+ +.++.++.
T Consensus 325 ~gKAGnLN~aL~~a------~GEyIavlDAD~ip~pdfL~~~V~~f~~-dP~VglVQ 374 (852)
T PRK11498 325 HAKAGNINNALKYA------KGEFVAIFDCDHVPTRSFLQMTMGWFLK-DKKLAMMQ 374 (852)
T ss_pred cchHHHHHHHHHhC------CCCEEEEECCCCCCChHHHHHHHHHHHh-CCCeEEEE
Confidence 25678888777554 358999999999987774 666665544 33444443
No 310
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=33.01 E-value=3.9e+02 Score=24.47 Aligned_cols=98 Identities=7% Similarity=0.105 Sum_probs=56.0
Q ss_pred ceeeCCcchhHHHHHHHHHHcCC--CEEEEEeccCchhHHHHHHHhhccCCcccCCCeEEEeccccCCCCCCCCcccChH
Q 009720 119 AVPVAGCYRLIDIPMSNCINSGI--NKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTA 196 (527)
Q Consensus 119 LlpIgGk~pLId~~l~~l~~~Gi--~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~~V~vl~~~q~~~~~~~~~~~Gta 196 (527)
++|.-+....|..+|+.+.+... -+|+|+-....+...+.+ +.+... ++ ..+.++...+. .|-+
T Consensus 3 vIp~yn~~~~l~~~l~sl~~q~~~~~eiiVvddgS~d~t~~~~-~~~~~~---~~-~~~~~~~~~~~---------~G~~ 68 (214)
T cd04196 3 LMATYNGEKYLREQLDSILAQTYKNDELIISDDGSTDGTVEII-KEYIDK---DP-FIIILIRNGKN---------LGVA 68 (214)
T ss_pred EEEecCcHHHHHHHHHHHHhCcCCCeEEEEEeCCCCCCcHHHH-HHHHhc---CC-ceEEEEeCCCC---------ccHH
Confidence 45666664578888888876532 356666544333333333 333111 11 11333332322 3777
Q ss_pred HHHHHHHHHHHhhhcCCCCeEEEEcCceeecCC-HHHHHHH
Q 009720 197 DAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQS 236 (527)
Q Consensus 197 ~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~d-l~~ll~~ 236 (527)
.++..+... ...+.++++..|..+..+ +..+++.
T Consensus 69 ~~~n~g~~~------~~g~~v~~ld~Dd~~~~~~l~~~~~~ 103 (214)
T cd04196 69 RNFESLLQA------ADGDYVFFCDQDDIWLPDKLERLLKA 103 (214)
T ss_pred HHHHHHHHh------CCCCEEEEECCCcccChhHHHHHHHH
Confidence 777666432 246889999999888766 6777776
No 311
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=30.29 E-value=4.1e+02 Score=27.90 Aligned_cols=106 Identities=12% Similarity=0.133 Sum_probs=67.9
Q ss_pred cceeeCCcch-hHHHHHHHHHHcCCC--EEEEEeccCchhHHHHHHHhhccCCcccCCCeEEEeccccCCCCCCCCcccC
Q 009720 118 PAVPVAGCYR-LIDIPMSNCINSGIN--KIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQG 194 (527)
Q Consensus 118 pLlpIgGk~p-LId~~l~~l~~~Gi~--~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~~V~vl~~~q~~~~~~~~~~~G 194 (527)
-++|.-|..+ .++.+++.+.+.... +|+++.....+...+.+.+.. . +++ ..+.++...+. ..|
T Consensus 58 viiP~ynE~~~~~~~~l~s~~~~dyp~~evivv~d~~~d~~~~~~~~~~-~---~~~-~~~~~~~~~~~--------~~g 124 (439)
T COG1215 58 VIIPAYNEEPEVLEETLESLLSQDYPRYEVIVVDDGSTDETYEILEELG-A---EYG-PNFRVIYPEKK--------NGG 124 (439)
T ss_pred EEEecCCCchhhHHHHHHHHHhCCCCCceEEEECCCCChhHHHHHHHHH-h---hcC-cceEEEecccc--------Ccc
Confidence 3466667656 899999999888643 787777766666666664322 1 111 12333311011 147
Q ss_pred hHHHHHHHHHHHHhhhcCCCCeEEEEcCceeecCC-HHHHHHHHHHcCC
Q 009720 195 TADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVDRDA 242 (527)
Q Consensus 195 ta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~d-l~~ll~~h~~~~a 242 (527)
-+.++..++.... .|-++++.+|+....| +.+++....+...
T Consensus 125 K~~al~~~l~~~~------~d~V~~~DaD~~~~~d~l~~~~~~f~~~~~ 167 (439)
T COG1215 125 KAGALNNGLKRAK------GDVVVILDADTVPEPDALRELVSPFEDPPV 167 (439)
T ss_pred chHHHHHHHhhcC------CCEEEEEcCCCCCChhHHHHHHhhhcCCCe
Confidence 7888887765543 5889999999999877 5888877655433
No 312
>PLN03181 glycosyltransferase; Provisional
Probab=27.53 E-value=2.5e+02 Score=30.33 Aligned_cols=84 Identities=15% Similarity=0.262 Sum_probs=43.6
Q ss_pred cCCCEEEEEeccC----chhHHHHHHHhhccCCcccCC--C-eEEEeccccCCCCCCCCcccChHHHHHHHHHHHHhhhc
Q 009720 139 SGINKIFVLTQFN----SASLNRHIARTYFGNGTNFGD--G-FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKN 211 (527)
Q Consensus 139 ~Gi~~I~Iv~~~~----~~~i~~hl~~~y~~~~~~~~~--~-~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~~~~ 211 (527)
.|-.+|+|||+.+ ....-+|+....+.|...+.. + .+.+....- ..+....| .-..+||.++....
T Consensus 125 ~~~prVViVT~Sdp~~C~~~~gD~~LlriikNR~dYArrHGY~lf~~~a~L-d~~~p~~W--aKipalRaAM~a~P---- 197 (453)
T PLN03181 125 GAEERVVMVTGSQPTPCKNPIGDHLLLRFFKNKVDYCRIHGYDIFYNNALL-HPKMNSYW--AKLPVVRAAMLAHP---- 197 (453)
T ss_pred CCCCCEEEEECCCCCCCCCcccHHHHHHHHHHHHHHHHHhCCcEEEecccc-CccCchhh--hHHHHHHHHHHHCC----
Confidence 3567999999866 223333432222233222210 0 022221111 11223356 34678888876553
Q ss_pred CCCCeEEEEcCceee-cCCH
Q 009720 212 RNIENVAILCGDHLY-RMDY 230 (527)
Q Consensus 212 ~~~e~~Lvl~gD~l~-~~dl 230 (527)
..+-|.-+..|.++ ++++
T Consensus 198 -eAEWfWWLDsDALIMNp~~ 216 (453)
T PLN03181 198 -EAEWIWWVDSDAVFTDMDF 216 (453)
T ss_pred -CceEEEEecCCceeecCCC
Confidence 46899999999866 5543
No 313
>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional
Probab=27.43 E-value=5.1e+02 Score=26.45 Aligned_cols=51 Identities=10% Similarity=0.083 Sum_probs=34.8
Q ss_pred cChHHHHHHHHHHHHhhhcCCCCeEEEEcCcee-ecCC-HHHHHHHHH-HcCCcEEEEEE
Q 009720 193 QGTADAVRQFTWVFEDAKNRNIENVAILCGDHL-YRMD-YMDFIQSHV-DRDADITISCA 249 (527)
Q Consensus 193 ~Gta~al~~a~~~l~~~~~~~~e~~Lvl~gD~l-~~~d-l~~ll~~h~-~~~ad~tv~~~ 249 (527)
.|-+.|+..+.... ..+.++++.+|.. ++.+ +..+++... +.+.+++..++
T Consensus 101 ~Gkg~A~~~g~~~a------~gd~vv~lDaD~~~~~p~~l~~l~~~l~~~~~~~~V~g~~ 154 (306)
T PRK13915 101 PGKGEALWRSLAAT------TGDIVVFVDADLINFDPMFVPGLLGPLLTDPGVHLVKAFY 154 (306)
T ss_pred CCHHHHHHHHHHhc------CCCEEEEEeCccccCCHHHHHHHHHHHHhCCCceEEEEEe
Confidence 47888887765432 3588999999996 6554 688887665 34566655543
No 314
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=26.83 E-value=1e+02 Score=25.29 Aligned_cols=24 Identities=4% Similarity=0.146 Sum_probs=17.7
Q ss_pred hhHHHHHHHHHHcCCCEEEEEecc
Q 009720 127 RLIDIPMSNCINSGINKIFVLTQF 150 (527)
Q Consensus 127 pLId~~l~~l~~~Gi~~I~Iv~~~ 150 (527)
|.++..++.|...|+++|+++--+
T Consensus 45 P~i~~~l~~l~~~g~~~vvvvPl~ 68 (101)
T cd03409 45 PDTEEAIRELAEEGYQRVVIVPLA 68 (101)
T ss_pred CCHHHHHHHHHHcCCCeEEEEeCc
Confidence 777778888877788777776543
No 315
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=26.67 E-value=5.4e+02 Score=24.13 Aligned_cols=93 Identities=11% Similarity=0.074 Sum_probs=53.0
Q ss_pred eeeCCcc-hhHHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCcccCCCeEEEeccccCCCCCCCCcccChHHH
Q 009720 120 VPVAGCY-RLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADA 198 (527)
Q Consensus 120 lpIgGk~-pLId~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~~V~vl~~~q~~~~~~~~~~~Gta~a 198 (527)
+|.-+.. ..|..+|+.+.+. ..+|+|+=+...+... .. ..+ ....+.++..... .|-+.|
T Consensus 3 I~~yn~~~~~l~~~l~sl~~q-~~~iivvDn~s~~~~~-~~-~~~-------~~~~i~~i~~~~n---------~G~~~a 63 (237)
T cd02526 3 VVTYNPDLSKLKELLAALAEQ-VDKVVVVDNSSGNDIE-LR-LRL-------NSEKIELIHLGEN---------LGIAKA 63 (237)
T ss_pred EEEecCCHHHHHHHHHHHhcc-CCEEEEEeCCCCccHH-HH-hhc-------cCCcEEEEECCCc---------eehHHh
Confidence 4444443 5677778887766 4566665443222221 11 111 1123566554332 477788
Q ss_pred HHHHHHHHHhhhcCCCCeEEEEcCceeecCC-HHHHH
Q 009720 199 VRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFI 234 (527)
Q Consensus 199 l~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~d-l~~ll 234 (527)
...+..... +.+.+.++++.+|.....+ +..++
T Consensus 64 ~N~g~~~a~---~~~~d~v~~lD~D~~~~~~~l~~l~ 97 (237)
T cd02526 64 LNIGIKAAL---ENGADYVLLFDQDSVPPPDMVEKLL 97 (237)
T ss_pred hhHHHHHHH---hCCCCEEEEECCCCCcCHhHHHHHH
Confidence 777765543 1245899999999998776 46664
No 316
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=25.68 E-value=6.5e+02 Score=24.72 Aligned_cols=97 Identities=11% Similarity=0.009 Sum_probs=56.5
Q ss_pred hHHHHHHHHHHcCCCEEEEEeccCc--hhHHHHHHHhhccCCcccCCCeEEEeccccCCCCCCCCcccChHHHHHHHHHH
Q 009720 128 LIDIPMSNCINSGINKIFVLTQFNS--ASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWV 205 (527)
Q Consensus 128 LId~~l~~l~~~Gi~~I~Iv~~~~~--~~i~~hl~~~y~~~~~~~~~~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~ 205 (527)
.|..+++.+.+. ..+|+||=+... +.+.+.+ .. . ..+.++..... .|-|.|...++..
T Consensus 9 ~l~~~l~sl~~q-~~~iiVVDN~S~~~~~~~~~~-----~~---~--~~i~~i~~~~N---------~G~a~a~N~Gi~~ 68 (281)
T TIGR01556 9 HLGELITSLPKQ-VDRIIAVDNSPHSDQPLKNAR-----LR---G--QKIALIHLGDN---------QGIAGAQNQGLDA 68 (281)
T ss_pred HHHHHHHHHHhc-CCEEEEEECcCCCcHhHHHHh-----cc---C--CCeEEEECCCC---------cchHHHHHHHHHH
Confidence 566667666654 456666655421 2332222 11 1 23677764433 4888998888766
Q ss_pred HHhhhcCCCCeEEEEcCceeecCC-HHHHHHHHHHcCCcEEEE
Q 009720 206 FEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVDRDADITIS 247 (527)
Q Consensus 206 l~~~~~~~~e~~Lvl~gD~l~~~d-l~~ll~~h~~~~ad~tv~ 247 (527)
... ...+.++++..|.....+ +..+++...+.+..+.++
T Consensus 69 a~~---~~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~ 108 (281)
T TIGR01556 69 SFR---RGVQGVLLLDQDSRPGNAFLAAQWKLLSAENGQACAL 108 (281)
T ss_pred HHH---CCCCEEEEECCCCCCCHHHHHHHHHHHHhcCCceEEE
Confidence 531 346899999999988766 466776654433233333
No 317
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=24.95 E-value=5e+02 Score=25.69 Aligned_cols=96 Identities=16% Similarity=0.178 Sum_probs=48.2
Q ss_pred HHHHHHHHHHcCCCEEEEEeccCchhHHHHHHHhhccCCcccCCCeEEEeccccCCCCCCCCcccChHHHHHHHHHHHHh
Q 009720 129 IDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFED 208 (527)
Q Consensus 129 Id~~l~~l~~~Gi~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~~V~vl~~~q~~~~~~~~~~~Gta~al~~a~~~l~~ 208 (527)
..-.++.|...|+++|.|++.|. +++++.+. .||.. .| ++|+.......+....-..=+.+.++++...+.
T Consensus 108 ~~A~~~AL~alg~~RIalvTPY~-~~v~~~~~-~~l~~---~G---~eV~~~~~~~~~~~~~ia~i~p~~i~~~~~~~~- 178 (239)
T TIGR02990 108 SSAAVDGLAALGVRRISLLTPYT-PETSRPMA-QYFAV---RG---FEIVNFTCLGLTDDREMARISPDCIVEAALAAF- 178 (239)
T ss_pred HHHHHHHHHHcCCCEEEEECCCc-HHHHHHHH-HHHHh---CC---cEEeeeeccCCCCCceeeecCHHHHHHHHHHhc-
Confidence 34566777888999999999995 45566664 44332 12 344332110000000011123455555443332
Q ss_pred hhcCCCCeEEEEcCceeecCCHHHHHHH
Q 009720 209 AKNRNIENVAILCGDHLYRMDYMDFIQS 236 (527)
Q Consensus 209 ~~~~~~e~~Lvl~gD~l~~~dl~~ll~~ 236 (527)
+. .-+-++++|=.+-..++-+-++.
T Consensus 179 --~~-~aDAifisCTnLrt~~vi~~lE~ 203 (239)
T TIGR02990 179 --DP-DADALFLSCTALRAATCAQRIEQ 203 (239)
T ss_pred --CC-CCCEEEEeCCCchhHHHHHHHHH
Confidence 12 23566666766666665444443
No 318
>PRK05782 bifunctional sirohydrochlorin cobalt chelatase/precorrin-8X methylmutase; Validated
Probab=24.42 E-value=90 Score=32.70 Aligned_cols=58 Identities=17% Similarity=0.206 Sum_probs=38.7
Q ss_pred CCCCceEEEEEeCCCCCccccC-------cc---CCCc-----cceeeCCcchhHHHHHHHHHHcCCCEEEEEecc
Q 009720 90 VDPKNVAAIILGGGAGTKLFPL-------TL---RAAT-----PAVPVAGCYRLIDIPMSNCINSGINKIFVLTQF 150 (527)
Q Consensus 90 ~~~~~m~aVILAaG~GtRL~PL-------T~---~~PK-----pLlpIgGk~pLId~~l~~l~~~Gi~~I~Iv~~~ 150 (527)
+|+++|.++||.| .|||.--- .. .++. +++.+ .. |-|+..++.|...|.++|+|+--+
T Consensus 1 ~~~~~~~aiLLvg-HGSRdp~~~~~~~~La~~l~~~~~~~V~~aFLE~-~e-Psl~eal~~l~~~G~~~IvVvPlF 73 (335)
T PRK05782 1 MDRQSNTAIILIG-HGSRRETFNSDMEGMANYLKEKLGVPIYLTYNEF-AE-PNWRSLLNEIIKEGYRRVIIALAF 73 (335)
T ss_pred CCCCCCceEEEEe-cCCCChHHHHHHHHHHHHHHhccCCceEEEEecc-CC-CCHHHHHHHHHHCCCCEEEEeccc
Confidence 4677788988887 88885211 00 1111 22222 34 889999999999999998877644
No 319
>PRK10063 putative glycosyl transferase; Provisional
Probab=23.82 E-value=6.9e+02 Score=24.43 Aligned_cols=98 Identities=12% Similarity=0.103 Sum_probs=54.6
Q ss_pred eeCCcchhHHHHHHHHHH----cCC-CEEEEEeccCchhHHHHHHHhhccCCcccCCCeEEEeccccCCCCCCCCcccCh
Q 009720 121 PVAGCYRLIDIPMSNCIN----SGI-NKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGT 195 (527)
Q Consensus 121 pIgGk~pLId~~l~~l~~----~Gi-~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~~V~vl~~~q~~~~~~~~~~~Gt 195 (527)
|.-+....|..+++.+.+ .+. -+|+|+=+...+.-.+.+ +.|.. .. .+.++... . .|-
T Consensus 8 ~~yN~~~~l~~~l~sl~~~~~~~~~~~EiIVvDdgStD~t~~i~-~~~~~---~~---~i~~i~~~-~---------~G~ 70 (248)
T PRK10063 8 VAFRNLEGIVKTHASLRHLAQDPGISFEWIVVDGGSNDGTREFL-ENLNG---IF---NLRFVSEP-D---------NGI 70 (248)
T ss_pred EeCCCHHHHHHHHHHHHHHHhCCCCCEEEEEEECcCcccHHHHH-HHhcc---cC---CEEEEECC-C---------CCH
Confidence 443433567777777753 222 256555443334333334 33311 11 25555421 1 388
Q ss_pred HHHHHHHHHHHHhhhcCCCCeEEEEcCceeecCCHHHHHHHHHHcC
Q 009720 196 ADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRD 241 (527)
Q Consensus 196 a~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ 241 (527)
++|+..++.... .+.++++.+|.++..+..+++....+.+
T Consensus 71 ~~A~N~Gi~~a~------g~~v~~ld~DD~~~~~~~~~~~~~~~~~ 110 (248)
T PRK10063 71 YDAMNKGIAMAQ------GRFALFLNSGDIFHQDAANFVRQLKMQK 110 (248)
T ss_pred HHHHHHHHHHcC------CCEEEEEeCCcccCcCHHHHHHHHHhCC
Confidence 899888776543 4788999988888777655555544333
No 320
>PF04519 Bactofilin: Polymer-forming cytoskeletal; InterPro: IPR007607 This family contains several uncharacterised hypothetical proteins.
Probab=22.84 E-value=3.4e+02 Score=22.60 Aligned_cols=17 Identities=12% Similarity=0.192 Sum_probs=9.4
Q ss_pred CcEECCCCEEeeeEEeC
Q 009720 428 RSRLDYGVELKDTVMLG 444 (527)
Q Consensus 428 ~~~I~~~~~I~~~~i~~ 444 (527)
...|+.++.|+..+...
T Consensus 36 ~v~i~~~~~v~G~i~~~ 52 (101)
T PF04519_consen 36 KVKIGGNGEVKGDIKAD 52 (101)
T ss_pred EEEEcCCCEEEEEEEEe
Confidence 45566666665554443
No 321
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=22.18 E-value=6.4e+02 Score=23.46 Aligned_cols=108 Identities=13% Similarity=0.083 Sum_probs=56.7
Q ss_pred ceeeCCcchhHHHHHHHHHHcCC---CEEEEEeccCchhHHHHHHHhhccCCcccCCCeEEEeccccCCCCCCCCcccCh
Q 009720 119 AVPVAGCYRLIDIPMSNCINSGI---NKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGT 195 (527)
Q Consensus 119 LlpIgGk~pLId~~l~~l~~~Gi---~~I~Iv~~~~~~~i~~hl~~~y~~~~~~~~~~~V~vl~~~q~~~~~~~~~~~Gt 195 (527)
++|.-+....|..+|+.+.+.-. -+|+|+-....+.-.+.+ +.|.. .+....+.++...... .+..|-
T Consensus 2 iIp~yn~~~~l~~~l~sl~~q~~~~~~eiiVvDd~S~d~t~~i~-~~~~~---~~~~~~~~~~~~~~~~-----~~~~G~ 72 (219)
T cd06913 2 ILPVHNGEQWLDECLESVLQQDFEGTLELSVFNDASTDKSAEII-EKWRK---KLEDSGVIVLVGSHNS-----PSPKGV 72 (219)
T ss_pred EEeecCcHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCccHHHHH-HHHHH---hCcccCeEEEEecccC-----CCCccH
Confidence 35655554678888888876532 267666554333222222 22211 0111124443211110 112477
Q ss_pred HHHHHHHHHHHHhhhcCCCCeEEEEcCceeecCC-HHHHHHHHHHcC
Q 009720 196 ADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVDRD 241 (527)
Q Consensus 196 a~al~~a~~~l~~~~~~~~e~~Lvl~gD~l~~~d-l~~ll~~h~~~~ 241 (527)
+.+...+.... ..+.++++.+|.++..+ +..+++...+..
T Consensus 73 ~~a~N~g~~~a------~gd~i~~lD~D~~~~~~~l~~~~~~~~~~~ 113 (219)
T cd06913 73 GYAKNQAIAQS------SGRYLCFLDSDDVMMPQRIRLQYEAALQHP 113 (219)
T ss_pred HHHHHHHHHhc------CCCEEEEECCCccCChhHHHHHHHHHHhCC
Confidence 77776554332 35899999999888665 566776665444
Done!