BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009721
(527 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KB1|A Chain A, Crystal Structure Of The Nucleotide-Binding Protein Af_226
In Complex With Adp From Archaeoglobus Fulgidus,
Northeast Structural Genomics Consortium Target Gr157
pdb|3KB1|B Chain B, Crystal Structure Of The Nucleotide-Binding Protein Af_226
In Complex With Adp From Archaeoglobus Fulgidus,
Northeast Structural Genomics Consortium Target Gr157
Length = 262
Score = 159 bits (403), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 94/235 (40%), Positives = 130/235 (55%), Gaps = 5/235 (2%)
Query: 163 EQLPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVS 222
E + E L KI +AV S KGGVGKSTV LA A G +VGI DAD GPS+P +
Sbjct: 8 EDIKERLDKIGFRIAVXSGKGGVGKSTVTALLAVHYAKQGKKVGILDADFLGPSIPHLFG 67
Query: 223 PENRLLEMNPEKRTIIPTEYLGVKLVSFGFSGQGR---AIMRGPMVSGVINQLLTTTEWG 279
E + ++ E + T+ LG+K+ S F R I RGP+++G I + L WG
Sbjct: 68 LEKGKVAVSDEGLEPVLTQRLGIKVXSIQFLLPKRETPVIWRGPLIAGXIREFLGRVAWG 127
Query: 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAV 339
ELDYL+ID+PPGTGD LT+ Q AVIV+TPQ+L V K + + K + +
Sbjct: 128 ELDYLLIDLPPGTGDAPLTVXQDAKPNGAVIVSTPQELTAAVVEKAITXAEQTKTAVLGI 187
Query: 340 VENMCHFDAD--GKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPE 392
VEN +F+ G+R Y FG G S++ +++ I + ++PI L D G E
Sbjct: 188 VENXAYFECPNCGERTYLFGEGKASELARKYKIEFITEIPIDSDLLKLSDLGRVE 242
>pdb|2PH1|A Chain A, Crystal Structure Of Nucleotide-Binding Protein Af2382
From Archaeoglobus Fulgidus, Northeast Structural
Genomics Target Gr165
Length = 262
Score = 154 bits (388), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 89/235 (37%), Positives = 126/235 (53%), Gaps = 5/235 (2%)
Query: 163 EQLPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVS 222
E++ E L KI + +AV S KGGVGKSTV LA A G +VGI DAD GPS+P +
Sbjct: 8 EEIKERLGKIKSRIAVXSGKGGVGKSTVTALLAVHYARQGKKVGILDADFLGPSIPILFG 67
Query: 223 PENRLLEMNPEKRTIIPTEYLGVKLVSFGF---SGQGRAIMRGPMVSGVINQLLTTTEWG 279
N + ++ E + T+ G+K+ S F I RGP+++G I + L WG
Sbjct: 68 LRNARIAVSAEGLEPVLTQKYGIKVXSXQFLLPKENTPVIWRGPLIAGXIREFLGRVAWG 127
Query: 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAV 339
ELD+L+ID+PPGTGD LT+ Q T V+V+TPQ+L + V K + + + +
Sbjct: 128 ELDHLLIDLPPGTGDAPLTVXQDAKPTGVVVVSTPQELTAVIVEKAINXAEETNTSVLGL 187
Query: 340 VENMCHFDAD--GKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPE 392
VEN +F G + Y FG G G + +++ I +PI L DSG E
Sbjct: 188 VENXSYFVCPNCGHKSYIFGEGKGESLAKKYNIGFFTSIPIEEELIKLADSGRIE 242
>pdb|3VX3|A Chain A, Crystal Structure Of [nife] Hydrogenase Maturation Protein
Hypb From Thermococcus Kodakarensis Kod1
pdb|3VX3|B Chain B, Crystal Structure Of [nife] Hydrogenase Maturation Protein
Hypb From Thermococcus Kodakarensis Kod1
Length = 248
Score = 124 bits (310), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 77/222 (34%), Positives = 114/222 (51%), Gaps = 16/222 (7%)
Query: 169 LQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLL 228
L+ + I+ V S KGGVGKS V+ LA LA G RVG+ D D +G S ++ E +
Sbjct: 15 LEGVKRIIPVVSGKGGVGKSLVSTTLALVLAEKGYRVGLLDLDFHGASDHVILGFEPK-- 72
Query: 229 EMNPEKRTIIPTEYLGVKLVSFGFSGQGRAI-MRGPMVSGVINQLLTTTEWGELDYLVID 287
E E R ++P G+K ++ + + R +RG +S + +LLT T W ELDYLVID
Sbjct: 73 EFPEEDRGVVPPTVHGIKFMTIAYYTEDRPTPLRGKEISDALIELLTITRWDELDYLVID 132
Query: 288 MPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMC--- 344
MPPG GD L + + + ++V TP KL+ V K + + + I VVENM
Sbjct: 133 MPPGLGDQLLDVLRFLKRGEFLVVATPSKLSLNVVRKLIELLKEEGHKVIGVVENMKLRS 192
Query: 345 -HFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSAS 385
D + ++ ++FG+P+L +P P L A
Sbjct: 193 EQLDDE---------KDVEKLAEEFGVPYLVGIPFYPDLDAK 225
>pdb|1UWD|A Chain A, Nmr Structure Of A Protein With Unknown Function From
Thermotoga Maritima (Tm0487), Which Belongs To The Duf59
Family.
pdb|1WCJ|A Chain A, Conserved Hypothetical Protein Tm0487 From Thermotoga
Maritima
Length = 103
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 71 VSTGTAENDVLKALSQIIDPDFGTDIVSCGFVKDMQINEALGEVSFRLELTTPACPIKDM 130
+S + DVL AL +ID + G D+VS G V D+QI++ V + +TTP CP+ M
Sbjct: 2 MSKKVTKEDVLNALKNVIDFELGLDVVSLGLVYDIQIDDQ-NNVKVLMTMTTPMCPLAGM 60
Query: 131 FEQRANEVVLAIPWVNKVNVTMSAQP 156
A E + I VN V V ++ P
Sbjct: 61 ILSDAEEAIKKIEGVNNVEVELTFDP 86
>pdb|1HYQ|A Chain A, Mind Bacterial Cell Division Regulator From A. Fulgidus
Length = 263
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 80/176 (45%), Gaps = 19/176 (10%)
Query: 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPEN---RLLEMNP 232
+ V+S KGG GK+T+ NL LA +G V I DAD+ +L ++ E L +
Sbjct: 5 ITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADITMANLELILGMEGLPVTLQNVLA 64
Query: 233 EKRTIIPTEYL---GVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMP 289
+ I Y+ GVK+V G S +G + V+ Q++ +T D L++D P
Sbjct: 65 GEARIDEAIYVGPGGVKVVPAGVSLEGLRKANPEKLEDVLTQIMEST-----DILLLDAP 119
Query: 290 PGTGDIQLTLCQVVPLTAA---VIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVEN 342
G L V+ + AA ++V P+ + D K + +L + VV N
Sbjct: 120 AG-----LERSAVIAIAAAQELLLVVNPEISSITDGLKTKIVAERLGTKVLGVVVN 170
>pdb|1WCV|1 Chain 1, Structure Of The Bacterial Chromosome Segregation Protein
Soj
pdb|2BEJ|A Chain A, Structure Of The Bacterial Chromosome Segregation Protein
Soj
Length = 257
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 28/39 (71%)
Query: 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214
+A+++ KGGVGK+T A+NLA LA +G RV + D D G
Sbjct: 9 IALANQKGGVGKTTTAINLAAYLARLGKRVLLVDLDPQG 47
>pdb|2BEK|A Chain A, Structure Of The Bacterial Chromosome Segregation Protein
Soj
pdb|2BEK|B Chain B, Structure Of The Bacterial Chromosome Segregation Protein
Soj
pdb|2BEK|C Chain C, Structure Of The Bacterial Chromosome Segregation Protein
Soj
pdb|2BEK|D Chain D, Structure Of The Bacterial Chromosome Segregation Protein
Soj
Length = 257
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 26/34 (76%)
Query: 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 209
+A+++ KGGVGK+T A+NLA LA +G RV + D
Sbjct: 9 IALANQKGGVGKTTTAINLAAYLARLGKRVLLVD 42
>pdb|2CU6|A Chain A, Crystal Structure Of The Dtdp-4-keto-l-rhamnose
Reductase-related Protein From Thermus Thermophilus Hb8
pdb|2CU6|B Chain B, Crystal Structure Of The Dtdp-4-keto-l-rhamnose
Reductase-related Protein From Thermus Thermophilus Hb8
Length = 103
Score = 38.5 bits (88), Expect = 0.009, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 84 LSQIIDPDFGTDIVSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIP 143
L + DP+ G D+V+ G + D+ + V R LTTP CP+ D + + + +P
Sbjct: 15 LEAVYDPELGLDVVNLGLIYDLVVEPPRAYV--RXTLTTPGCPLHDSLGEAVRQALSRLP 72
>pdb|3CQ1|A Chain A, Structure Of The Dtdp-4-Keto-L-Rhamnose Reductase Related
Protein (Tt1362) From Thermus Thermophilus Hb8
pdb|3CQ2|A Chain A, Structure Of The Dtdp-4-Keto-L-Rhamnose Reductase Related
Protein (Other Form) From Thermus Thermophilus Hb8
pdb|3CQ2|B Chain B, Structure Of The Dtdp-4-Keto-L-Rhamnose Reductase Related
Protein (Other Form) From Thermus Thermophilus Hb8
pdb|3CQ2|C Chain C, Structure Of The Dtdp-4-Keto-L-Rhamnose Reductase Related
Protein (Other Form) From Thermus Thermophilus Hb8
pdb|3CQ2|D Chain D, Structure Of The Dtdp-4-Keto-L-Rhamnose Reductase Related
Protein (Other Form) From Thermus Thermophilus Hb8
pdb|3CQ3|A Chain A, Structure Of The Dtdp-4-Keto-L-Rhamnose Reductase Related
Protein (Other Form) From Thermus Thermophilus Hb8
pdb|3CQ3|B Chain B, Structure Of The Dtdp-4-Keto-L-Rhamnose Reductase Related
Protein (Other Form) From Thermus Thermophilus Hb8
pdb|3CQ3|C Chain C, Structure Of The Dtdp-4-Keto-L-Rhamnose Reductase Related
Protein (Other Form) From Thermus Thermophilus Hb8
pdb|3CQ3|D Chain D, Structure Of The Dtdp-4-Keto-L-Rhamnose Reductase Related
Protein (Other Form) From Thermus Thermophilus Hb8
pdb|3CQ3|E Chain E, Structure Of The Dtdp-4-Keto-L-Rhamnose Reductase Related
Protein (Other Form) From Thermus Thermophilus Hb8
Length = 103
Score = 38.5 bits (88), Expect = 0.009, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 84 LSQIIDPDFGTDIVSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIP 143
L + DP+ G D+V+ G + D+ + V R LTTP CP+ D + + + +P
Sbjct: 15 LEAVYDPELGLDVVNLGLIYDLVVEPPRAYV--RXTLTTPGCPLHDSLGEAVRQALSRLP 72
>pdb|1DE0|A Chain A, Modulating The Midpoint Potential Of The [4fe-4s] Cluster
Of The Nitrogenase Fe Protein
pdb|1DE0|B Chain B, Modulating The Midpoint Potential Of The [4fe-4s] Cluster
Of The Nitrogenase Fe Protein
pdb|1XCP|A Chain A, Crystal Structure Of The Nitrogenase Fe Protein Phe135trp
With Mgadp Bound
pdb|1XCP|B Chain B, Crystal Structure Of The Nitrogenase Fe Protein Phe135trp
With Mgadp Bound
pdb|1XCP|C Chain C, Crystal Structure Of The Nitrogenase Fe Protein Phe135trp
With Mgadp Bound
pdb|1XCP|D Chain D, Crystal Structure Of The Nitrogenase Fe Protein Phe135trp
With Mgadp Bound
Length = 289
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 37/80 (46%), Gaps = 10/80 (12%)
Query: 182 KGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMV--SPENRLLEMNPEKRTIIP 239
KGG+GKST NL LA MG +V I D S ++ +N ++EM E T+
Sbjct: 10 KGGIGKSTTTQNLVAALAEMGKKVMIVGCDPKADSTRLILHSKAQNTIMEMAAEAGTVED 69
Query: 240 TE--------YLGVKLVSFG 251
E Y GVK V G
Sbjct: 70 LELEDVLKAGYGGVKCVESG 89
>pdb|2XIT|A Chain A, Crystal Structure Of Monomeric Mipz
pdb|2XIT|B Chain B, Crystal Structure Of Monomeric Mipz
Length = 294
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 64/150 (42%), Gaps = 15/150 (10%)
Query: 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNP 232
+ ++ V + KGG GKST+AV+L L GA+V + D D+ + ENR ++
Sbjct: 4 TRVIVVGNEKGGAGKSTIAVHLVTALLYGGAKVAVIDLDLRQRTSARFF--ENRRAWLD- 60
Query: 233 EKRTIIPTEYLGVKLVSFGFSGQGRAIMRGPMVSGVIN-QLLTTTEWGELDYLVIDMPPG 291
K+ +P ++ S A+ P V + E D+++ID P G
Sbjct: 61 NKKIELPEP------LALNLSDNDVALAERPEEEQVAGFEAAFARAMAECDFILIDTPGG 114
Query: 292 TGDIQLTLCQVVPLTAAVIVTTPQKLAFID 321
I + A +V TP +F+D
Sbjct: 115 DSAITR-----MAHGRADLVVTPMNDSFVD 139
>pdb|2XJ4|A Chain A, Structure Of The Bacterial Cell Division Regulator Protein
Mipz
Length = 286
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 64/150 (42%), Gaps = 15/150 (10%)
Query: 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNP 232
+ ++ V + KGG GKST+AV+L L GA+V + D D+ + ENR ++
Sbjct: 4 TRVIVVGNEKGGAGKSTIAVHLVTALLYGGAKVAVIDLDLRQRTSARFF--ENRRAWLD- 60
Query: 233 EKRTIIPTEYLGVKLVSFGFSGQGRAIMRGPMVSGVIN-QLLTTTEWGELDYLVIDMPPG 291
K+ +P ++ S A+ P V + E D+++ID P G
Sbjct: 61 NKKIELPEP------LALNLSDNDVALAERPEEEQVAGFEAAFARAMAECDFILIDTPGG 114
Query: 292 TGDIQLTLCQVVPLTAAVIVTTPQKLAFID 321
I + A +V TP +F+D
Sbjct: 115 DSAITR-----MAHGRADLVVTPMNDSFVD 139
>pdb|2C8V|A Chain A, Insights Into The Role Of Nucleotide-Dependent
Conformational Change In Nitrogenase Catalysis:
Structural Characterization Of The Nitrogenase Fe
Protein Leu127 Deletion Variant With Bound Mgatp
Length = 288
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 37/80 (46%), Gaps = 10/80 (12%)
Query: 182 KGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMV--SPENRLLEMNPEKRTIIP 239
KGG+GKST NL LA MG +V I D S ++ +N ++EM E T+
Sbjct: 10 KGGIGKSTTTQNLVAALAEMGKKVMIVGCDPKADSTRLILHSKAQNTIMEMAAEAGTVED 69
Query: 240 TE--------YLGVKLVSFG 251
E Y GVK V G
Sbjct: 70 LELEDVLKAGYGGVKCVESG 89
>pdb|1NIP|A Chain A, Crystallographic Structure Of The Nitrogenase Iron Protein
From Azotobacter Vinelandii
pdb|1NIP|B Chain B, Crystallographic Structure Of The Nitrogenase Iron Protein
From Azotobacter Vinelandii
pdb|1N2C|E Chain E, Nitrogenase Complex From Azotobacter Vinelandii Stabilized
By Adp-Tetrafluoroaluminate
pdb|1N2C|F Chain F, Nitrogenase Complex From Azotobacter Vinelandii Stabilized
By Adp-Tetrafluoroaluminate
pdb|1N2C|G Chain G, Nitrogenase Complex From Azotobacter Vinelandii Stabilized
By Adp-Tetrafluoroaluminate
pdb|1N2C|H Chain H, Nitrogenase Complex From Azotobacter Vinelandii Stabilized
By Adp-Tetrafluoroaluminate
pdb|2NIP|A Chain A, Nitrogenase Iron Protein From Azotobacter Vinelandii
pdb|2NIP|B Chain B, Nitrogenase Iron Protein From Azotobacter Vinelandii
pdb|1G1M|A Chain A, All-Ferrous Nitrogenase Iron Protein From Azotobacter
Vinelandii
pdb|1G1M|B Chain B, All-Ferrous Nitrogenase Iron Protein From Azotobacter
Vinelandii
pdb|1G5P|A Chain A, Nitrogenase Iron Protein From Azotobacter Vinelandii
pdb|1G5P|B Chain B, Nitrogenase Iron Protein From Azotobacter Vinelandii
pdb|1FP6|A Chain A, The Nitrogenase Fe Protein From Azotobacter Vinelandii
Complexed With Mgadp
pdb|1FP6|B Chain B, The Nitrogenase Fe Protein From Azotobacter Vinelandii
Complexed With Mgadp
pdb|1FP6|C Chain C, The Nitrogenase Fe Protein From Azotobacter Vinelandii
Complexed With Mgadp
pdb|1FP6|D Chain D, The Nitrogenase Fe Protein From Azotobacter Vinelandii
Complexed With Mgadp
pdb|1M1Y|E Chain E, Chemical Crosslink Of Nitrogenase Mofe Protein And Fe
Protein
pdb|1M1Y|F Chain F, Chemical Crosslink Of Nitrogenase Mofe Protein And Fe
Protein
pdb|1M1Y|G Chain G, Chemical Crosslink Of Nitrogenase Mofe Protein And Fe
Protein
pdb|1M1Y|H Chain H, Chemical Crosslink Of Nitrogenase Mofe Protein And Fe
Protein
pdb|1M1Y|M Chain M, Chemical Crosslink Of Nitrogenase Mofe Protein And Fe
Protein
pdb|1M1Y|N Chain N, Chemical Crosslink Of Nitrogenase Mofe Protein And Fe
Protein
pdb|1M1Y|O Chain O, Chemical Crosslink Of Nitrogenase Mofe Protein And Fe
Protein
pdb|1M1Y|P Chain P, Chemical Crosslink Of Nitrogenase Mofe Protein And Fe
Protein
pdb|1M34|E Chain E, Nitrogenase Complex From Azotobacter Vinelandii Stabilized
By Adp- Tetrafluoroaluminate
pdb|1M34|F Chain F, Nitrogenase Complex From Azotobacter Vinelandii Stabilized
By Adp- Tetrafluoroaluminate
pdb|1M34|G Chain G, Nitrogenase Complex From Azotobacter Vinelandii Stabilized
By Adp- Tetrafluoroaluminate
pdb|1M34|H Chain H, Nitrogenase Complex From Azotobacter Vinelandii Stabilized
By Adp- Tetrafluoroaluminate
pdb|1M34|M Chain M, Nitrogenase Complex From Azotobacter Vinelandii Stabilized
By Adp- Tetrafluoroaluminate
pdb|1M34|N Chain N, Nitrogenase Complex From Azotobacter Vinelandii Stabilized
By Adp- Tetrafluoroaluminate
pdb|1M34|O Chain O, Nitrogenase Complex From Azotobacter Vinelandii Stabilized
By Adp- Tetrafluoroaluminate
pdb|1M34|P Chain P, Nitrogenase Complex From Azotobacter Vinelandii Stabilized
By Adp- Tetrafluoroaluminate
pdb|2AFH|E Chain E, Crystal Structure Of Nucleotide-Free Av2-Av1 Complex
pdb|2AFH|F Chain F, Crystal Structure Of Nucleotide-Free Av2-Av1 Complex
pdb|2AFI|E Chain E, Crystal Structure Of Mgadp Bound Av2-Av1 Complex
pdb|2AFI|F Chain F, Crystal Structure Of Mgadp Bound Av2-Av1 Complex
pdb|2AFI|G Chain G, Crystal Structure Of Mgadp Bound Av2-Av1 Complex
pdb|2AFI|H Chain H, Crystal Structure Of Mgadp Bound Av2-Av1 Complex
pdb|2AFI|M Chain M, Crystal Structure Of Mgadp Bound Av2-Av1 Complex
pdb|2AFI|N Chain N, Crystal Structure Of Mgadp Bound Av2-Av1 Complex
pdb|2AFI|O Chain O, Crystal Structure Of Mgadp Bound Av2-Av1 Complex
pdb|2AFI|P Chain P, Crystal Structure Of Mgadp Bound Av2-Av1 Complex
pdb|2AFK|E Chain E, Crystal Structure Of Mgamppcp-Bound Av2-Av1 Complex
pdb|2AFK|F Chain F, Crystal Structure Of Mgamppcp-Bound Av2-Av1 Complex
pdb|2AFK|G Chain G, Crystal Structure Of Mgamppcp-Bound Av2-Av1 Complex
pdb|2AFK|H Chain H, Crystal Structure Of Mgamppcp-Bound Av2-Av1 Complex
Length = 289
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 37/80 (46%), Gaps = 10/80 (12%)
Query: 182 KGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMV--SPENRLLEMNPEKRTIIP 239
KGG+GKST NL LA MG +V I D S ++ +N ++EM E T+
Sbjct: 10 KGGIGKSTTTQNLVAALAEMGKKVMIVGCDPKADSTRLILHSKAQNTIMEMAAEAGTVED 69
Query: 240 TE--------YLGVKLVSFG 251
E Y GVK V G
Sbjct: 70 LELEDVLKAGYGGVKCVESG 89
>pdb|1G20|E Chain E, Mgatp-Bound And Nucleotide-Free Structures Of A
Nitrogenase Protein Complex Between Leu127del-Fe Protein
And The Mofe Protein
pdb|1G20|F Chain F, Mgatp-Bound And Nucleotide-Free Structures Of A
Nitrogenase Protein Complex Between Leu127del-Fe Protein
And The Mofe Protein
pdb|1G20|G Chain G, Mgatp-Bound And Nucleotide-Free Structures Of A
Nitrogenase Protein Complex Between Leu127del-Fe Protein
And The Mofe Protein
pdb|1G20|H Chain H, Mgatp-Bound And Nucleotide-Free Structures Of A
Nitrogenase Protein Complex Between Leu127del-Fe Protein
And The Mofe Protein
pdb|1G21|E Chain E, Mgatp-Bound And Nucleotide-Free Structures Of A
Nitrogenase Protein Complex Between Leu127del-Fe Protein
And The Mofe Protein
pdb|1G21|F Chain F, Mgatp-Bound And Nucleotide-Free Structures Of A
Nitrogenase Protein Complex Between Leu127del-Fe Protein
And The Mofe Protein
pdb|1G21|G Chain G, Mgatp-Bound And Nucleotide-Free Structures Of A
Nitrogenase Protein Complex Between Leu127del-Fe Protein
And The Mofe Protein
pdb|1G21|H Chain H, Mgatp-Bound And Nucleotide-Free Structures Of A
Nitrogenase Protein Complex Between Leu127del-Fe Protein
And The Mofe Protein
Length = 289
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 37/80 (46%), Gaps = 10/80 (12%)
Query: 182 KGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMV--SPENRLLEMNPEKRTIIP 239
KGG+GKST NL LA MG +V I D S ++ +N ++EM E T+
Sbjct: 11 KGGIGKSTTTQNLVAALAEMGKKVMIVGCDPKADSTRLILHSKAQNTIMEMAAEAGTVED 70
Query: 240 TE--------YLGVKLVSFG 251
E Y GVK V G
Sbjct: 71 LELEDVLKAGYGGVKCVESG 90
>pdb|1XDB|A Chain A, Crystal Structure Of The Nitrogenase Fe Protein Asp129glu
pdb|1XDB|B Chain B, Crystal Structure Of The Nitrogenase Fe Protein Asp129glu
Length = 289
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 37/80 (46%), Gaps = 10/80 (12%)
Query: 182 KGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMV--SPENRLLEMNPEKRTIIP 239
KGG+GKST NL LA MG +V I D S ++ +N ++EM E T+
Sbjct: 10 KGGIGKSTTTQNLVAALAEMGKKVMIVGCDPKADSTRLILHSKAQNTIMEMAAEAGTVED 69
Query: 240 TE--------YLGVKLVSFG 251
E Y GVK V G
Sbjct: 70 LELEDVLKAGYGGVKCVESG 89
>pdb|1RW4|A Chain A, Nitrogenase Fe Protein L127 Deletion Variant
Length = 272
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 37/80 (46%), Gaps = 10/80 (12%)
Query: 182 KGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMV--SPENRLLEMNPEKRTIIP 239
KGG+GKST NL LA MG +V I D S ++ +N ++EM E T+
Sbjct: 11 KGGIGKSTTTQNLVAALAEMGKKVMIVGCDPKADSTRLILHSKAQNTIMEMAAEAGTVED 70
Query: 240 TE--------YLGVKLVSFG 251
E Y GVK V G
Sbjct: 71 LELEDVLKAGYGGVKCVESG 90
>pdb|1ION|A Chain A, The Septum Site-Determining Protein Mind Complexed With
Mg-Adp From Pyrococcus Horikoshii Ot3
Length = 243
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 59/261 (22%), Positives = 105/261 (40%), Gaps = 29/261 (11%)
Query: 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMN- 231
+ I+++ S KGG GK+TV NL+ L G +V D D+ +L ++ ++ + ++
Sbjct: 2 TRIISIVSGKGGTGKTTVTANLSVALGEXGRKVLAVDGDLTXANLSLVLGVDDVNITLHD 61
Query: 232 ------PEKRTIIPTEYLGVKLVSFGFSGQGRAIMRGPM-VSGVINQLLTTTEWGELDYL 284
+ I T++ V ++ + I P + VI L G+ D++
Sbjct: 62 VLAGDAKLEDAIYXTQFENVYILPGAVDWE-HVIKADPRKLPEVIKSL-----KGKYDFI 115
Query: 285 VIDMPPGTGDIQL-TLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENM 343
+ID P G +QL + A++VT P+ D K + K + + + N
Sbjct: 116 LIDCPAG---LQLRAXSAXLSGEEAILVTNPEISCLTDTXKVGXVLKKAGLAILGFILN- 171
Query: 344 CHFDADGKRYYPFGRGSGSQVVQQF-GIPHLFDLPIRPTLSASGDSGMPEVAADPCGEVA 402
RY R + Q +P L +P P + G+P V P + A
Sbjct: 172 --------RYGRSERDIPPEAAQDVXDVPLLAVIPEDPVIREGTLEGIPAVKYKPESKGA 223
Query: 403 NTFQDLGVCVVQQCAKIRQQV 423
F L V + A I+ ++
Sbjct: 224 QAFIKLA-EEVDKLAGIKAKI 243
>pdb|3BFV|A Chain A, Crystal Structure Of The Chimerical Protein Capab
pdb|3BFV|B Chain B, Crystal Structure Of The Chimerical Protein Capab
Length = 271
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 76/192 (39%), Gaps = 19/192 (9%)
Query: 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPS------LPTMVSPENRLLE 229
+ ++S G GKST+A NLA A G + I D D+ P+ LP + LL
Sbjct: 85 IVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGDMRKPTQHYIFNLPNNEGLSSLLLN 144
Query: 230 MNPEKRTIIPTEYLGVKLVSFG-FSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDM 288
+ + +II TE + +++ G ++ + + + LL ++++ID
Sbjct: 145 WSTYQDSIISTEIEDLDVLTSGPIPPNPSELITSRAFANLYDTLLMN-----YNFVIIDT 199
Query: 289 PP--GTGDIQLTLCQVVPLTAAVI-VTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCH 345
PP D QL T V+ V + +V KG + + VV N
Sbjct: 200 PPVNTVTDAQL----FSKFTGNVVYVVNSENNNKDEVKKGKELIEATGAKLLGVVLNRMP 255
Query: 346 FDADGKRYYPFG 357
D Y +G
Sbjct: 256 KDKSASYYAYYG 267
>pdb|3LNO|A Chain A, Crystal Structure Of Domain Of Unknown Function Duf59 From
Bacillus Anthracis
pdb|3LNO|B Chain B, Crystal Structure Of Domain Of Unknown Function Duf59 From
Bacillus Anthracis
pdb|3LNO|C Chain C, Crystal Structure Of Domain Of Unknown Function Duf59 From
Bacillus Anthracis
pdb|3LNO|D Chain D, Crystal Structure Of Domain Of Unknown Function Duf59 From
Bacillus Anthracis
pdb|3LNO|E Chain E, Crystal Structure Of Domain Of Unknown Function Duf59 From
Bacillus Anthracis
pdb|3LNO|F Chain F, Crystal Structure Of Domain Of Unknown Function Duf59 From
Bacillus Anthracis
Length = 108
Score = 37.0 bits (84), Expect = 0.025, Method: Composition-based stats.
Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 6/94 (6%)
Query: 64 TNATSVEVSTGTAENDVLKALSQIIDPDFGTDIVSCGFVKDMQINEALGEVSFRLELTTP 123
+NA S E EN + L +IDP+ G DIV+ G V D+ +E V T+
Sbjct: 1 SNAXSQE----AFENKLYANLEAVIDPELGVDIVNLGLVYDVTADENNNAV-ITXTXTSI 55
Query: 124 ACPIKDMFEQRANEVVLA-IPWVNKVNVTMSAQP 156
CP +V+ +P VN++ V + P
Sbjct: 56 GCPXAGQIVSDVKKVLSTNVPEVNEIEVNVVWNP 89
>pdb|1XD8|A Chain A, Crystal Structure Of The Nitrogenase Fe Protein Asp39asn
pdb|1XD8|B Chain B, Crystal Structure Of The Nitrogenase Fe Protein Asp39asn
pdb|1XD9|A Chain A, Crystal Structure Of The Nitrogenase Fe Protein Asp39asn
With Mgadp Bound
pdb|1XD9|B Chain B, Crystal Structure Of The Nitrogenase Fe Protein Asp39asn
With Mgadp Bound
Length = 289
Score = 36.2 bits (82), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 37/80 (46%), Gaps = 10/80 (12%)
Query: 182 KGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMV--SPENRLLEMNPEKRTIIP 239
KGG+GKST NL LA MG +V I + S ++ +N ++EM E T+
Sbjct: 10 KGGIGKSTTTQNLVAALAEMGKKVMIVGCNPKADSTRLILHSKAQNTIMEMAAEAGTVED 69
Query: 240 TE--------YLGVKLVSFG 251
E Y GVK V G
Sbjct: 70 LELEDVLKAGYGGVKCVESG 89
>pdb|2XJ9|A Chain A, Dimer Structure Of The Bacterial Cell Division Regulator
Mipz
pdb|2XJ9|B Chain B, Dimer Structure Of The Bacterial Cell Division Regulator
Mipz
Length = 286
Score = 35.8 bits (81), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 209
+ ++ V + KGG GKST+AV+L L GA+V + D
Sbjct: 4 TRVIVVGNEKGGAGKSTIAVHLVTALLYGGAKVAVID 40
>pdb|3K9G|A Chain A, Crystal Structure Of A Plasmid Partition Protein From
Borrelia Burgdorferi At 2.25a Resolution, Iodide Soak
pdb|3K9H|A Chain A, Crystal Structure Of A Plasmid Partition Protein From
Borrelia Burgdorferi At 2.25a Resolution
pdb|3K9H|B Chain B, Crystal Structure Of A Plasmid Partition Protein From
Borrelia Burgdorferi At 2.25a Resolution
Length = 267
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211
I+ ++S KGGVGKST A+ LA TL +V + D D
Sbjct: 29 IITIASIKGGVGKSTSAIILA-TLLSKNNKVLLIDMD 64
>pdb|1G3Q|A Chain A, Crystal Structure Analysis Of Pyrococcus Furiosus Cell
Division Atpase Mind
pdb|1G3R|A Chain A, Crystal Structure Analysis Of Pyrococcus Furiosus Cell
Division Atpase Mind
Length = 237
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 30/54 (55%)
Query: 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPEN 225
+ I+++ S KGG GK+TV NL+ L G +V D D+ +L ++ ++
Sbjct: 1 MGRIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDLTMANLSLVLGVDD 54
>pdb|2VED|A Chain A, Crystal Structure Of The Chimerical Mutant Capabk55m
Protein
pdb|2VED|B Chain B, Crystal Structure Of The Chimerical Mutant Capabk55m
Protein
Length = 271
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 75/192 (39%), Gaps = 19/192 (9%)
Query: 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPS------LPTMVSPENRLLE 229
+ ++S G G ST+A NLA A G + I D D+ P+ LP + LL
Sbjct: 85 IVITSEAPGAGMSTIAANLAVAYAQAGYKTLIVDGDMRKPTQHYIFNLPNNEGLSSLLLN 144
Query: 230 MNPEKRTIIPTEYLGVKLVSFG-FSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDM 288
+ + +II TE + +++ G ++ + + + LL ++++ID
Sbjct: 145 WSTYQDSIISTEIEDLDVLTSGPIPPNPSELITSRAFANLYDTLLMN-----YNFVIIDT 199
Query: 289 PP--GTGDIQLTLCQVVPLTAAVI-VTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCH 345
PP D QL T V+ V + +V KG + + VV N
Sbjct: 200 PPVNTVTDAQL----FSKFTGNVVYVVNSENNNKDEVKKGKELIEATGAKLLGVVLNRMP 255
Query: 346 FDADGKRYYPFG 357
D Y +G
Sbjct: 256 KDKSASYYAYYG 267
>pdb|3CWQ|A Chain A, Crystal Structure Of Chromosome Partitioning Protein
(Para) In Complex With Adp From Synechocystis Sp.
Northeast Structural Genomics Consortium Target Sgr89
pdb|3CWQ|B Chain B, Crystal Structure Of Chromosome Partitioning Protein
(Para) In Complex With Adp From Synechocystis Sp.
Northeast Structural Genomics Consortium Target Sgr89
Length = 209
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 9/72 (12%)
Query: 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD------VYGP--SLPTMVSPENR 226
I+ V+S KGGVGK+T AV+L+ LA G + + D D +G SLP V E +
Sbjct: 2 IITVASFKGGVGKTTTAVHLSAYLALQGETL-LIDGDPNRSATGWGKRGSLPFKVVDERQ 60
Query: 227 LLEMNPEKRTII 238
+ P+ + I+
Sbjct: 61 AAKYAPKYQNIV 72
>pdb|1J8M|F Chain F, Signal Recognition Particle Conserved Gtpase Domain From
A. Ambivalens
Length = 297
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%)
Query: 184 GVGKSTVAVNLAYTLAGMGARVGIFDADVYGPS 216
G GK+T A LAY G +VG+ ADVY P+
Sbjct: 108 GTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPA 140
>pdb|1J8Y|F Chain F, Signal Recognition Particle Conserved Gtpase Domain From
A. Ambivalens T112a Mutant
Length = 297
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%)
Query: 184 GVGKSTVAVNLAYTLAGMGARVGIFDADVYGPS 216
G GK+T A LAY G +VG+ ADVY P+
Sbjct: 108 GTGKATTAGKLAYFYKKKGFKVGLVGADVYRPA 140
>pdb|1QZW|A Chain A, Crystal Structure Of The Complete Core Of Archaeal Srp And
Implications For Inter-Domain Communication
pdb|1QZW|C Chain C, Crystal Structure Of The Complete Core Of Archaeal Srp And
Implications For Inter-Domain Communication
pdb|1QZW|E Chain E, Crystal Structure Of The Complete Core Of Archaeal Srp And
Implications For Inter-Domain Communication
pdb|1QZW|G Chain G, Crystal Structure Of The Complete Core Of Archaeal Srp And
Implications For Inter-Domain Communication
pdb|1QZX|A Chain A, Crystal Structure Of The Complete Core Of Archaeal Srp And
Implications For Inter-Domain Communication
pdb|1QZX|B Chain B, Crystal Structure Of The Complete Core Of Archaeal Srp And
Implications For Inter-Domain Communication
Length = 440
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%)
Query: 184 GVGKSTVAVNLAYTLAGMGARVGIFDADVYGPS 216
G GK+T A LAY G +VG+ ADVY P+
Sbjct: 114 GSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPA 146
>pdb|3KL4|A Chain A, Recognition Of A Signal Peptide By The Signal Recognition
Particle
Length = 433
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%)
Query: 184 GVGKSTVAVNLAYTLAGMGARVGIFDADVYGPS 216
G GK+T A LAY G +VG+ ADVY P+
Sbjct: 107 GSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPA 139
>pdb|3Q9L|A Chain A, The Structure Of The Dimeric E.Coli Mind-Atp Complex
pdb|3Q9L|B Chain B, The Structure Of The Dimeric E.Coli Mind-Atp Complex
pdb|3R9I|A Chain A, 2.6a Resolution Structure Of Mind Complexed With Mine
(12-31) Peptide
pdb|3R9I|B Chain B, 2.6a Resolution Structure Of Mind Complexed With Mine
(12-31) Peptide
pdb|3R9I|C Chain C, 2.6a Resolution Structure Of Mind Complexed With Mine
(12-31) Peptide
pdb|3R9I|D Chain D, 2.6a Resolution Structure Of Mind Complexed With Mine
(12-31) Peptide
pdb|3R9J|A Chain A, 4.3a Resolution Structure Of A Mind-Mine(I24n) Protein
Complex
pdb|3R9J|B Chain B, 4.3a Resolution Structure Of A Mind-Mine(I24n) Protein
Complex
Length = 260
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 33/57 (57%)
Query: 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLL 228
++ I+ V+S KGGVGK+T + +A LA G + + D + +L ++ E R++
Sbjct: 1 MARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFAIGLRNLDLIMGCERRVV 57
>pdb|3PG5|A Chain A, Crystal Structure Of Protein Dip2308 From Corynebacterium
Diphtheriae, Northeast Structural Genomics Consortium
Target Cdr78
pdb|3PG5|B Chain B, Crystal Structure Of Protein Dip2308 From Corynebacterium
Diphtheriae, Northeast Structural Genomics Consortium
Target Cdr78
pdb|3PG5|C Chain C, Crystal Structure Of Protein Dip2308 From Corynebacterium
Diphtheriae, Northeast Structural Genomics Consortium
Target Cdr78
pdb|3PG5|D Chain D, Crystal Structure Of Protein Dip2308 From Corynebacterium
Diphtheriae, Northeast Structural Genomics Consortium
Target Cdr78
Length = 361
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211
++ + KGGVGK+T++ N+A+ A G RV D D
Sbjct: 4 ISFFNNKGGVGKTTLSTNVAHYFALQGKRVLYVDCD 39
>pdb|3KZH|A Chain A, Crystal Structure Of A Putative Sugar Kinase From
Clostridium Perfringens
pdb|3KZH|B Chain B, Crystal Structure Of A Putative Sugar Kinase From
Clostridium Perfringens
Length = 328
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 37/87 (42%), Gaps = 16/87 (18%)
Query: 38 NFSLHPSKLEKSIWVSHRPSIFGCGSTNATSVEVSTG---TAENDVLKALSQI------- 87
NF L P EK+ WV H F N E+ G T +D++KA +
Sbjct: 162 NFILDPVSAEKASWVKHLIKDFHTIKPNRHEAEILAGFPITDTDDLIKASNYFLGLGIKK 221
Query: 88 ----IDPD--FGTDIVSCGFVKDMQIN 108
+D D F D VSCG +K +++
Sbjct: 222 VFISLDADGIFYNDGVSCGKIKATEVD 248
>pdb|3KD9|A Chain A, Crystal Structure Of Pyridine Nucleotide Disulfide
Oxidoreductase From Pyrococcus Horikoshii
pdb|3KD9|B Chain B, Crystal Structure Of Pyridine Nucleotide Disulfide
Oxidoreductase From Pyrococcus Horikoshii
pdb|3KD9|C Chain C, Crystal Structure Of Pyridine Nucleotide Disulfide
Oxidoreductase From Pyrococcus Horikoshii
Length = 449
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 5 HAPCWPHLPFQGCKSPSILALVPPDRFLQLSAINFSLHPSKLE 47
HAPC +G +P L PP+ F++ I+ L+ +E
Sbjct: 42 HAPCGIPYVVEGLSTPDKLMYYPPEVFIKKRGIDLHLNAEVIE 84
>pdb|1F48|A Chain A, Crystal Structure Of The Escherichia Coli
Arsenite-Translocating Atpase
pdb|1IHU|A Chain A, Crystal Structure Of The Escherichia Coli
Arsenite-Translocating Atpase In Complex With
Mg-Adp-Alf3
pdb|1II0|A Chain A, Crystal Structure Of The Escherichia Coli
Arsenite-Translocating Atpase
pdb|1II0|B Chain B, Crystal Structure Of The Escherichia Coli
Arsenite-Translocating Atpase
pdb|1II9|A Chain A, Crystal Structure Of The Escherichia Coli Arsenite-
Translocating Atpase In Complex With Amp-Pnp
pdb|1II9|B Chain B, Crystal Structure Of The Escherichia Coli Arsenite-
Translocating Atpase In Complex With Amp-Pnp
Length = 589
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 182 KGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211
KGGVGK+T+A +A LA MG V + +D
Sbjct: 335 KGGVGKTTMAAAIAVRLADMGFDVHLTTSD 364
>pdb|3OND|A Chain A, Crystal Structure Of Lupinus Luteus
S-Adenosyl-L-Homocysteine Hydrolase In Complex With
Adenosine
pdb|3OND|B Chain B, Crystal Structure Of Lupinus Luteus
S-Adenosyl-L-Homocysteine Hydrolase In Complex With
Adenosine
pdb|3ONE|A Chain A, Crystal Structure Of Lupinus Luteus
S-Adenosyl-L-Homocysteine Hydrolase In Complex With
Adenine
pdb|3ONE|B Chain B, Crystal Structure Of Lupinus Luteus
S-Adenosyl-L-Homocysteine Hydrolase In Complex With
Adenine
pdb|3ONF|A Chain A, Crystal Structure Of Lupinus Luteus
S-Adenosyl-L-Homocysteine Hydrolase In Complex With
Cordycepin
pdb|3ONF|B Chain B, Crystal Structure Of Lupinus Luteus
S-Adenosyl-L-Homocysteine Hydrolase In Complex With
Cordycepin
Length = 488
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 47/199 (23%), Positives = 82/199 (41%), Gaps = 37/199 (18%)
Query: 39 FSLHPSKLEKSIWVSHRPSIFGCGST--------NATSVEVSTGTAENDVLKALSQIIDP 90
F+ L++ W + R +G G T++ + G ++ + Q DP
Sbjct: 110 FAWKGETLQEYWWCTERALDWGPGGGPDLIVDDGGDTTLLIHEGVKAEEIYEKSGQFPDP 169
Query: 91 DFGTD---------IVSCGFVKDMQINEALGE--VSFRLELTTPACPIKDMFEQRANEVV 139
D TD I+ G D + + + V E TT +K +++ +AN +
Sbjct: 170 D-STDNAEFKIVLSIIKEGLKTDPKRYHKMKDRVVGVSEETTTG---VKRLYQMQANGTL 225
Query: 140 LAIPWVNKVNVTMSAQPARPIFA--EQLPEGLQKISNI-----VAVSSCKGGVGKSTVAV 192
L P +N VN +++ ++ LP+GL + +++ VAV + G VGK A
Sbjct: 226 L-FPAIN-VNDSVTKSKFDNLYGCRHSLPDGLMRATDVMIAGKVAVVAGYGDVGKGCAAA 283
Query: 193 NLAYTLAGMGARVGIFDAD 211
L GARV + + D
Sbjct: 284 -----LKQAGARVIVTEID 297
>pdb|1B3R|A Chain A, Rat Liver S-Adenosylhomocystein Hydrolase
pdb|1B3R|B Chain B, Rat Liver S-Adenosylhomocystein Hydrolase
pdb|1B3R|C Chain C, Rat Liver S-Adenosylhomocystein Hydrolase
pdb|1B3R|D Chain D, Rat Liver S-Adenosylhomocystein Hydrolase
pdb|1K0U|A Chain A, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1K0U|B Chain B, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1K0U|C Chain C, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1K0U|D Chain D, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1K0U|E Chain E, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1K0U|F Chain F, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1K0U|G Chain G, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1K0U|H Chain H, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1KY4|A Chain A, S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
pdb|1KY4|B Chain B, S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
pdb|1KY4|C Chain C, S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
pdb|1KY4|D Chain D, S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
pdb|2H5L|A Chain A, S-adenosylhomocysteine Hydrolase Containing Nad And
3-deaza- D-eritadenine
pdb|2H5L|B Chain B, S-adenosylhomocysteine Hydrolase Containing Nad And
3-deaza- D-eritadenine
pdb|2H5L|C Chain C, S-adenosylhomocysteine Hydrolase Containing Nad And
3-deaza- D-eritadenine
pdb|2H5L|D Chain D, S-adenosylhomocysteine Hydrolase Containing Nad And
3-deaza- D-eritadenine
pdb|2H5L|E Chain E, S-adenosylhomocysteine Hydrolase Containing Nad And
3-deaza- D-eritadenine
pdb|2H5L|F Chain F, S-adenosylhomocysteine Hydrolase Containing Nad And
3-deaza- D-eritadenine
pdb|2H5L|G Chain G, S-adenosylhomocysteine Hydrolase Containing Nad And
3-deaza- D-eritadenine
pdb|2H5L|H Chain H, S-adenosylhomocysteine Hydrolase Containing Nad And
3-deaza- D-eritadenine
Length = 431
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 66/135 (48%), Gaps = 21/135 (15%)
Query: 84 LSQIIDPDFGTDIVSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIP 143
L+ I+D G D+ + K Q+ + +S E TT + ++++ AN + L +P
Sbjct: 124 LNMILDD--GGDLTNLIHTKHPQLLSGIRGIS---EETTTG--VHNLYKMMANGI-LKVP 175
Query: 144 WVNKVNVTMSAQPARPIFA--EQLPEGLQKISNI-----VAVSSCKGGVGKSTVAVNLAY 196
+N VN +++ ++ E L +G+++ +++ VAV + G VGK A
Sbjct: 176 AIN-VNDSVTKSKFDNLYGCRESLIDGIKRATDVMIAGKVAVVAGYGDVGKGC-----AQ 229
Query: 197 TLAGMGARVGIFDAD 211
L G GARV I + D
Sbjct: 230 ALRGFGARVIITEID 244
>pdb|1XWF|A Chain A, K185n Mutated S-adenosylhomocysteine Hydrolase
pdb|1XWF|B Chain B, K185n Mutated S-adenosylhomocysteine Hydrolase
pdb|1XWF|C Chain C, K185n Mutated S-adenosylhomocysteine Hydrolase
pdb|1XWF|D Chain D, K185n Mutated S-adenosylhomocysteine Hydrolase
Length = 431
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 66/135 (48%), Gaps = 21/135 (15%)
Query: 84 LSQIIDPDFGTDIVSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIP 143
L+ I+D G D+ + K Q+ + +S E TT + ++++ AN + L +P
Sbjct: 124 LNMILDD--GGDLTNLIHTKHPQLLSGIRGIS---EETTTG--VHNLYKMMANGI-LKVP 175
Query: 144 WVNKVNVTMSAQPARPIFA--EQLPEGLQKISNI-----VAVSSCKGGVGKSTVAVNLAY 196
+N VN +++ ++ E L +G+++ +++ VAV + G VGK A
Sbjct: 176 AIN-VNDSVTNSKFDNLYGCRESLIDGIKRATDVMIAGKVAVVAGYGDVGKGC-----AQ 229
Query: 197 TLAGMGARVGIFDAD 211
L G GARV I + D
Sbjct: 230 ALRGFGARVIITEID 244
>pdb|4DZZ|A Chain A, Structure Of Parf-Adp, Crystal Form 1
pdb|4DZZ|B Chain B, Structure Of Parf-Adp, Crystal Form 1
pdb|4E03|A Chain A, Structure Of Parf-Adp Form 2
pdb|4E03|B Chain B, Structure Of Parf-Adp Form 2
pdb|4E07|A Chain A, Parf-Amppcp-C2221 Form
pdb|4E07|B Chain B, Parf-Amppcp-C2221 Form
pdb|4E09|A Chain A, Structure Of Parf-Amppcp, I422 Form
Length = 206
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 182 KGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211
KGG GK+T +N+A L+ G + + D D
Sbjct: 10 KGGSGKTTAVINIATALSRSGYNIAVVDTD 39
>pdb|2X8F|A Chain A, Native Structure Of Endo-1,5-Alpha-L-Arabinanases From
Bacillus Subtilis
pdb|2X8F|B Chain B, Native Structure Of Endo-1,5-Alpha-L-Arabinanases From
Bacillus Subtilis
Length = 470
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 49/130 (37%), Gaps = 15/130 (11%)
Query: 263 PMVSGVINQLLTTTEWGELDYL----VIDMPPGTGDIQLTLCQ------VVPLTAAVIVT 312
P++ V +L T EW + D L V + G + C+ + + A +
Sbjct: 78 PLIPNVYEELKETFEWAQSDTLWAADVTQLADGKYYMYYNACRGDSPRSAMGVAVADNIE 137
Query: 313 TPQKLAFIDVAKGVRMFSKLKVPCIA-----VVENMCHFDADGKRYYPFGRGSGSQVVQQ 367
P K I + G+ S P A VV+ FD DGK + +G SG + +
Sbjct: 138 GPYKNKGIFLKSGMEGTSSDGTPYDATKHPNVVDPHTFFDKDGKLWMVYGSYSGGIFILE 197
Query: 368 FGIPHLFDLP 377
F LP
Sbjct: 198 MNPKTGFPLP 207
>pdb|2X8T|A Chain A, Crystal Structure Of The Abn2 H318a Mutant
pdb|2X8T|B Chain B, Crystal Structure Of The Abn2 H318a Mutant
Length = 471
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 49/130 (37%), Gaps = 15/130 (11%)
Query: 263 PMVSGVINQLLTTTEWGELDYL----VIDMPPGTGDIQLTLCQ------VVPLTAAVIVT 312
P++ V +L T EW + D L V + G + C+ + + A +
Sbjct: 78 PLIPNVYEELKETFEWAQSDTLWAADVTQLADGKYYMYYNACRGDSPRSAMGVAVADNIE 137
Query: 313 TPQKLAFIDVAKGVRMFSKLKVPCIA-----VVENMCHFDADGKRYYPFGRGSGSQVVQQ 367
P K I + G+ S P A VV+ FD DGK + +G SG + +
Sbjct: 138 GPYKNKGIFLKSGMEGTSSDGTPYDATKHPNVVDPHTFFDKDGKLWMVYGSYSGGIFILE 197
Query: 368 FGIPHLFDLP 377
F LP
Sbjct: 198 MNPKTGFPLP 207
>pdb|3NJ4|A Chain A, Fluoro-Neplanocin A In Human S-Adenosylhomocysteine
Hydrolase
pdb|3NJ4|B Chain B, Fluoro-Neplanocin A In Human S-Adenosylhomocysteine
Hydrolase
pdb|3NJ4|C Chain C, Fluoro-Neplanocin A In Human S-Adenosylhomocysteine
Hydrolase
pdb|3NJ4|D Chain D, Fluoro-Neplanocin A In Human S-Adenosylhomocysteine
Hydrolase
Length = 435
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 48/92 (52%), Gaps = 14/92 (15%)
Query: 127 IKDMFEQRANEVVLAIPWVNKVNVTMSAQPARPIFA--EQLPEGLQKISNI-----VAVS 179
+ ++++ AN + L +P +N VN +++ ++ E L +G+++ +++ VAV
Sbjct: 164 VHNLYKMMANGI-LKVPAIN-VNDSVTKSKFDNLYGCRESLIDGIKRATDVMIAGKVAVV 221
Query: 180 SCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211
+ G VGK A L G GARV I + D
Sbjct: 222 AGYGDVGKGC-----AQALRGFGARVIITEID 248
>pdb|1A7A|A Chain A, Structure Of Human Placental S-adenosylhomocysteine
Hydrolase: Determination Of A 30 Selenium Atom
Substructure From Data At A Single Wavelength
pdb|1A7A|B Chain B, Structure Of Human Placental S-adenosylhomocysteine
Hydrolase: Determination Of A 30 Selenium Atom
Substructure From Data At A Single Wavelength
Length = 432
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 48/92 (52%), Gaps = 14/92 (15%)
Query: 127 IKDMFEQRANEVVLAIPWVNKVNVTMSAQPARPIFA--EQLPEGLQKISNI-----VAVS 179
+ ++++ AN + L +P +N VN +++ ++ E L +G+++ +++ VAV
Sbjct: 161 VHNLYKXXANGI-LKVPAIN-VNDSVTKSKFDNLYGCRESLIDGIKRATDVXIAGKVAVV 218
Query: 180 SCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211
+ G VGK A L G GARV I + D
Sbjct: 219 AGYGDVGKGC-----AQALRGFGARVIITEID 245
>pdb|1LI4|A Chain A, Human S-Adenosylhomocysteine Hydrolase Complexed With
Neplanocin
Length = 432
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 48/92 (52%), Gaps = 14/92 (15%)
Query: 127 IKDMFEQRANEVVLAIPWVNKVNVTMSAQPARPIFA--EQLPEGLQKISNI-----VAVS 179
+ ++++ AN + L +P +N VN +++ ++ E L +G+++ +++ VAV
Sbjct: 161 VHNLYKMMANGI-LKVPAIN-VNDSVTKSKFDNLYGCRESLIDGIKRATDVMIAGKVAVV 218
Query: 180 SCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211
+ G VGK A L G GARV I + D
Sbjct: 219 AGYGDVGKGC-----AQALRGFGARVIITEID 245
>pdb|1EFN|B Chain B, Hiv-1 Nef Protein In Complex With R96i Mutant Fyn Sh3
Domain
pdb|1EFN|D Chain D, Hiv-1 Nef Protein In Complex With R96i Mutant Fyn Sh3
Domain
Length = 152
Score = 29.3 bits (64), Expect = 5.9, Method: Composition-based stats.
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 448 FLHPATVRRNDRSAQSVDEWTGDQKLQYTDVPEDIEPE 485
LHP ++ D + V EW D +L + V ++ PE
Sbjct: 111 LLHPVSLHGMDDPEREVLEWRFDSRLAFHHVARELHPE 148
>pdb|1AVZ|A Chain A, V-1 Nef Protein In Complex With Wild Type Fyn Sh3 Domain
pdb|1AVZ|B Chain B, V-1 Nef Protein In Complex With Wild Type Fyn Sh3 Domain
pdb|1AVV|A Chain A, Hiv-1 Nef Protein, Unliganded Core Domain
pdb|4D8D|B Chain B, Crystal Structure Of Hiv-1 Nef Fyn-sh3 R96w Variant
pdb|4D8D|D Chain D, Crystal Structure Of Hiv-1 Nef Fyn-sh3 R96w Variant
Length = 151
Score = 29.3 bits (64), Expect = 6.0, Method: Composition-based stats.
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 448 FLHPATVRRNDRSAQSVDEWTGDQKLQYTDVPEDIEPE 485
LHP ++ D + V EW D +L + V ++ PE
Sbjct: 109 LLHPVSLHGMDDPEREVLEWRFDSRLAFHHVARELHPE 146
>pdb|4EMZ|C Chain C, Hiv-1 Nef In Complex With Mhc-I Cytoplasmic Domain And Mu1
Adaptin Subunit Of Ap1 Adaptor (Second Domain)
pdb|4EMZ|B Chain B, Hiv-1 Nef In Complex With Mhc-I Cytoplasmic Domain And Mu1
Adaptin Subunit Of Ap1 Adaptor (Second Domain)
Length = 206
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 448 FLHPATVRRNDRSAQSVDEWTGDQKLQYTDVPEDIEPEEIR 488
LHP ++ D + V EW D +L + V ++ PE +
Sbjct: 164 LLHPVSLHGXDDPEREVLEWRFDSRLAFHHVARELHPEYFK 204
>pdb|3BL8|A Chain A, Crystal Structure Of The Extracellular Domain Of
Neuroligin 2a From Mouse
pdb|3BL8|B Chain B, Crystal Structure Of The Extracellular Domain Of
Neuroligin 2a From Mouse
pdb|3BL8|C Chain C, Crystal Structure Of The Extracellular Domain Of
Neuroligin 2a From Mouse
pdb|3BL8|D Chain D, Crystal Structure Of The Extracellular Domain Of
Neuroligin 2a From Mouse
Length = 580
Score = 28.9 bits (63), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 341 ENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASG 386
EN+ HF D +R FG G+G+ V + H + + ++ SG
Sbjct: 208 ENIAHFGGDPERITIFGSGAGASCVNLLILSHHSEGLFQKAIAQSG 253
>pdb|4EN2|B Chain B, Hiv-1 Nef In Complex With Mhc-I Cytoplasmic Domain And Mu1
Adaptin Subunit Of Ap1 Adaptor (Second Domain)
pdb|4EN2|C Chain C, Hiv-1 Nef In Complex With Mhc-I Cytoplasmic Domain And Mu1
Adaptin Subunit Of Ap1 Adaptor (Second Domain)
Length = 206
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 448 FLHPATVRRNDRSAQSVDEWTGDQKLQYTDVPEDIEPEEIR 488
LHP ++ D + V EW D +L + V ++ PE +
Sbjct: 164 LLHPVSLHGMDDPEREVLEWRFDSRLAFHHVARELHPEYFK 204
>pdb|1VRP|A Chain A, The 2.1 Structure Of T. Californica Creatine Kinase
Complexed With The Transition-State Analogue Complex,
Adp- Mg 2+ NO3-CREATINE
pdb|1VRP|B Chain B, The 2.1 Structure Of T. Californica Creatine Kinase
Complexed With The Transition-State Analogue Complex,
Adp- Mg 2+ NO3-CREATINE
Length = 381
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 18/35 (51%)
Query: 352 RYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASG 386
+YYP S ++ Q LFD PI P L ASG
Sbjct: 172 KYYPLSSMSDAEQQQLIDDHFLFDKPISPLLLASG 206
>pdb|3TB8|A Chain A, Crystal Structure Of Full-Length Myristoylated Hiv-1 Nef
Length = 206
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 448 FLHPATVRRNDRSAQSVDEWTGDQKLQYTDVPEDIEPEEIR 488
LHP ++ D + V EW D +L + V ++ PE +
Sbjct: 164 LLHPVSLHGMDDPEREVLEWRFDSRLAFHHVARELHPEYFK 204
>pdb|1D4F|A Chain A, Crystal Structure Of Recombinant Rat-Liver D244e Mutant S-
Adenosylhomocysteine Hydrolase
pdb|1D4F|B Chain B, Crystal Structure Of Recombinant Rat-Liver D244e Mutant S-
Adenosylhomocysteine Hydrolase
pdb|1D4F|C Chain C, Crystal Structure Of Recombinant Rat-Liver D244e Mutant S-
Adenosylhomocysteine Hydrolase
pdb|1D4F|D Chain D, Crystal Structure Of Recombinant Rat-Liver D244e Mutant S-
Adenosylhomocysteine Hydrolase
pdb|1KY5|A Chain A, D244e Mutant S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
pdb|1KY5|B Chain B, D244e Mutant S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
pdb|1KY5|C Chain C, D244e Mutant S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
pdb|1KY5|D Chain D, D244e Mutant S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
Length = 431
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 63/129 (48%), Gaps = 21/129 (16%)
Query: 84 LSQIIDPDFGTDIVSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIP 143
L+ I+D G D+ + K Q+ + +S E TT + ++++ AN + L +P
Sbjct: 124 LNMILDD--GGDLTNLIHTKHPQLLSGIRGIS---EETTTG--VHNLYKMMANGI-LKVP 175
Query: 144 WVNKVNVTMSAQPARPIFA--EQLPEGLQKISNI-----VAVSSCKGGVGKSTVAVNLAY 196
+N VN +++ ++ E L +G+++ +++ VAV + G VGK A
Sbjct: 176 AIN-VNDSVTKSKFDNLYGCRESLIDGIKRATDVMIAGKVAVVAGYGDVGKGC-----AQ 229
Query: 197 TLAGMGARV 205
L G GARV
Sbjct: 230 ALRGFGARV 238
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,917,251
Number of Sequences: 62578
Number of extensions: 676665
Number of successful extensions: 1670
Number of sequences better than 100.0: 54
Number of HSP's better than 100.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1611
Number of HSP's gapped (non-prelim): 59
length of query: 527
length of database: 14,973,337
effective HSP length: 103
effective length of query: 424
effective length of database: 8,527,803
effective search space: 3615788472
effective search space used: 3615788472
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)